Mercurial > hg > orthanc-tests
annotate Tests/Tests.py @ 391:227d9a932467
testing revisions in metadata
author | Sebastien Jodogne <s.jodogne@gmail.com> |
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date | Fri, 16 Apr 2021 17:13:53 +0200 |
parents | 5c2472f008eb |
children | 5cbcb4a83b41 |
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22 | 1 #!/usr/bin/env python |
2 # -*- coding: utf-8 -*- | |
3 | |
4 | |
3 | 5 # Orthanc - A Lightweight, RESTful DICOM Store |
73 | 6 # Copyright (C) 2012-2016 Sebastien Jodogne, Medical Physics |
3 | 7 # Department, University Hospital of Liege, Belgium |
363
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8 # Copyright (C) 2017-2021 Osimis S.A., Belgium |
3 | 9 # |
10 # This program is free software: you can redistribute it and/or | |
11 # modify it under the terms of the GNU General Public License as | |
12 # published by the Free Software Foundation, either version 3 of the | |
13 # License, or (at your option) any later version. | |
14 # | |
15 # This program is distributed in the hope that it will be useful, but | |
16 # WITHOUT ANY WARRANTY; without even the implied warranty of | |
17 # MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU | |
18 # General Public License for more details. | |
19 # | |
20 # You should have received a copy of the GNU General Public License | |
21 # along with this program. If not, see <http://www.gnu.org/licenses/>. | |
22 | |
23 | |
202
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24 import base64 |
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25 import bz2 |
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26 import copy |
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27 import pprint |
14 | 28 import tempfile |
3 | 29 import unittest |
295 | 30 import shutil |
3 | 31 |
11 | 32 from PIL import ImageChops |
3 | 33 from Toolbox import * |
13 | 34 from xml.dom import minidom |
312 | 35 from datetime import datetime |
3 | 36 |
37 _LOCAL = None | |
38 _REMOTE = None | |
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39 _DOCKER = False |
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40 |
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41 |
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42 def SetOrthancParameters(local, remote, withinDocker): |
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43 global _LOCAL, _REMOTE, _DOCKER |
3 | 44 _LOCAL = local |
45 _REMOTE = remote | |
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46 _DOCKER = withinDocker |
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47 |
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48 |
14 | 49 def ExtractDicomTags(rawDicom, tags): |
50 with tempfile.NamedTemporaryFile(delete = True) as f: | |
51 f.write(rawDicom) | |
52 f.flush() | |
45 | 53 data = subprocess.check_output([ FindExecutable('dcm2xml'), f.name ]) |
14 | 54 |
55 result = [] | |
56 for tag in tags: | |
57 match = re.search('<element[^>]+name="%s">([^>]*)</element>' % tag, data) | |
58 if match == None: | |
59 result.append('') | |
60 else: | |
61 result.append(match.group(1)) | |
62 | |
63 return result | |
64 | |
65 | |
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66 def CompareLists(a, b): |
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67 if len(a) != len(b): |
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68 return False |
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69 |
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70 for i in range(len(a)): |
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71 d = a[i] - b[i] |
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72 if abs(d) >= 0.51: # Add some tolerance for rounding errors |
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73 return False |
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74 |
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75 return True |
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76 |
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77 |
80
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78 def CompareTags(a, b, tagsToIgnore): |
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79 for i in tagsToIgnore: |
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80 if i in a: |
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81 del a[i] |
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82 if i in b: |
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83 del b[i] |
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84 |
123 | 85 if a.keys() == b.keys(): |
86 return True | |
87 else: | |
88 print('Mismatch in tags: %s' % str(set(a.keys()) ^ set(b.keys()))) | |
89 return False | |
80
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90 |
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91 |
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92 def CallFindScu(args): |
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93 p = subprocess.Popen([ FindExecutable('findscu'), |
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94 '-P', '-aec', _REMOTE['DicomAet'], '-aet', _LOCAL['DicomAet'], |
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95 _REMOTE['Server'], str(_REMOTE['DicomPort']) ] + args, |
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96 stderr=subprocess.PIPE) |
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97 return p.communicate()[1] |
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98 |
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99 |
142 | 100 def GetMoveScuCommand(): |
101 return [ | |
102 FindExecutable('movescu'), | |
103 '--move', _LOCAL['DicomAet'], # Target AET (i.e. storescp) | |
104 '--call', _REMOTE['DicomAet'], # Called AET (i.e. Orthanc) | |
105 '--aetitle', _LOCAL['DicomAet'], # Calling AET (i.e. storescp) | |
106 _REMOTE['Server'], | |
107 str(_REMOTE['DicomPort']) | |
108 ] | |
109 | |
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110 |
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111 def IsDicomUntilPixelDataStored(orthanc): |
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112 # This function detects whether the "StorageCompression" option is |
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113 # "true", OR the storage area does not support read-range |
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114 |
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115 if IsOrthancVersionAbove(orthanc, 1, 9, 1): |
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116 i = UploadInstance(orthanc, 'ColorTestMalaterre.dcm') ['ID'] |
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117 a = DoGet(orthanc, '/instances/%s/metadata/PixelDataOffset' % i) |
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118 if a != 0x03a0: |
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119 raise Exception('Internal error') |
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120 |
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121 a = DoGet(orthanc, '/instances/%s/attachments' % i) |
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122 if len(a) != 1 and len(a) != 2 or not 'dicom' in a: |
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123 raise Exception('Internal error') |
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124 |
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125 DoDelete(orthanc, '/instances/%s' % i) |
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126 |
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127 if len(a) == 1: |
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128 return False |
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129 elif 'dicom-until-pixel-data' in a: |
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130 return True |
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131 else: |
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132 raise Exception('Internal error') |
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133 |
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134 else: |
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135 return False |
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136 |
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137 |
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138 def CallMoveScu(args): |
231
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139 try: |
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140 subprocess.check_call(GetMoveScuCommand() + args, |
318
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141 stderr = subprocess.PIPE) |
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142 except subprocess.CalledProcessError as e: |
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143 # The error code "69" corresponds to "EXITCODE_CMOVE_ERROR", |
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144 # that has been introduced in DCMTK 3.6.2. This error code is |
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145 # expected by some tests that try and C-MOVE non-existing |
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146 # DICOM instances. |
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147 # https://groups.google.com/d/msg/orthanc-users/DCRc5NeSCbM/DG-pSWj-BwAJ |
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148 if e.returncode != 69: |
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149 raise e |
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150 |
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151 |
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152 def GenerateTestSequence(): |
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153 return [ |
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154 { |
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155 'StudyDescription': 'Hello^', |
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156 'ReferencedStudySequence' : [ |
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157 { |
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158 'StudyDescription': 'Toto', |
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159 }, |
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160 { |
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161 'StudyDescription': 'Tata', |
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162 }, |
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163 ] |
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164 }, |
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165 { |
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166 'StudyDescription': 'Sébastien^', |
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167 'StudyDate' : '19700202', |
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168 } |
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171 |
3 | 172 class Orthanc(unittest.TestCase): |
173 def setUp(self): | |
83 | 174 if (sys.version_info >= (3, 0)): |
175 # Remove annoying warnings about unclosed socket in Python 3 | |
176 import warnings | |
177 warnings.simplefilter("ignore", ResourceWarning) | |
178 | |
3 | 179 DropOrthanc(_LOCAL) |
180 DropOrthanc(_REMOTE) | |
174 | 181 UninstallLuaCallbacks(_REMOTE) |
312 | 182 #print("%s: In test %s" % (datetime.now(), self._testMethodName)) |
44
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183 |
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184 def AssertSameImages(self, truth, url): |
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185 im = GetImage(_REMOTE, url) |
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186 self.assertTrue(CompareLists(truth, im.getdata())) |
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187 |
3 | 188 |
189 def test_system(self): | |
177 | 190 self.assertTrue('Version' in DoGet(_REMOTE, '/system')) |
191 self.assertEqual('0', DoGet(_REMOTE, '/statistics')['TotalDiskSize']) | |
192 self.assertEqual('0', DoGet(_REMOTE, '/statistics')['TotalUncompressedSize']) | |
193 | |
194 systemInfo = DoGet(_REMOTE, '/system') | |
195 if systemInfo["Version"] == "mainline": | |
196 print "Skipping version checks since you're currently in mainline" | |
197 return | |
198 | |
173 | 199 self.assertTrue(IsOrthancVersionAbove(_LOCAL, 0, 8, 6)) |
200 self.assertFalse(IsOrthancVersionAbove(_LOCAL, 0, 8, 7)) | |
201 self.assertTrue(IsOrthancVersionAbove(_LOCAL, 0, 7, 6)) | |
202 self.assertFalse(IsOrthancVersionAbove(_LOCAL, 0, 9, 6)) | |
203 self.assertFalse(IsOrthancVersionAbove(_LOCAL, 1, 8, 6)) | |
3 | 204 |
205 def test_upload(self): | |
173 | 206 self.assertEqual('0', DoGet(_REMOTE, '/statistics')['TotalDiskSize']) |
207 self.assertEqual('0', DoGet(_REMOTE, '/statistics')['TotalUncompressedSize']) | |
208 | |
209 sizeDummyCT = 2472 | |
210 sizeOverwrite = 2476 | |
211 instance = '66a662ce-7430e543-bad44d47-0dc5a943-ec7a538d' | |
212 | |
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213 # This file has *no* pixel data => "dicom-until-pixel-data" is not created |
3 | 214 u = UploadInstance(_REMOTE, 'DummyCT.dcm') |
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215 isCompressed = (DoGet(_REMOTE, '/instances/%s/attachments/dicom/is-compressed' % u['ID']) != 0) |
183 | 216 self.assertEqual(instance, u['ID']) |
3 | 217 self.assertEqual('Success', u['Status']) |
173 | 218 |
183 | 219 if True: |
220 # New test for Orthanc 1.4.3 | |
221 self.assertEqual('f2635388-f01d497a-15f7c06b-ad7dba06-c4c599fe', u['ParentSeries']) | |
222 self.assertEqual('b9c08539-26f93bde-c81ab0d7-bffaf2cb-a4d0bdd0', u['ParentStudy']) | |
223 self.assertEqual('6816cb19-844d5aee-85245eba-28e841e6-2414fae2', u['ParentPatient']) | |
224 | |
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225 if IsOrthancVersionAbove(_REMOTE, 1, 9, 1): |
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226 self.assertRaises(Exception, lambda: DoGet(_REMOTE, '/instances/%s/attachments/dicom-as-json' % instance)) |
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227 self.assertRaises(Exception, lambda: DoGet(_REMOTE, '/instances/%s/attachments/dicom-until-pixel-data' % instance)) |
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228 j = 0 |
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229 else: |
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230 self.assertRaises(Exception, lambda: DoGet(_REMOTE, '/instances/%s/attachments/dicom-until-pixel-data' % instance)) |
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231 j = int(DoGet(_REMOTE, '/instances/%s/attachments/dicom-as-json/size' % instance)) |
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232 |
173 | 233 s = sizeDummyCT + j |
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234 |
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235 if isCompressed: |
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236 self.assertGreater(s, int(DoGet(_REMOTE, '/statistics')['TotalDiskSize'])) |
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237 else: |
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238 self.assertEqual(s, int(DoGet(_REMOTE, '/statistics')['TotalDiskSize'])) |
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239 |
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240 self.assertEqual(s, int(DoGet(_REMOTE, '/statistics')['TotalUncompressedSize'])) |
173 | 241 |
3 | 242 u = UploadInstance(_REMOTE, 'DummyCT.dcm') |
243 self.assertEqual(1, len(DoGet(_REMOTE, '/patients'))) | |
244 self.assertEqual(1, len(DoGet(_REMOTE, '/studies'))) | |
245 self.assertEqual(1, len(DoGet(_REMOTE, '/series'))) | |
246 self.assertEqual(1, len(DoGet(_REMOTE, '/instances'))) | |
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247 |
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248 if isCompressed: |
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249 self.assertGreater(s, int(DoGet(_REMOTE, '/statistics')['TotalDiskSize'])) |
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250 else: |
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251 self.assertEqual(s, int(DoGet(_REMOTE, '/statistics')['TotalDiskSize'])) |
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252 |
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253 self.assertEqual(s, int(DoGet(_REMOTE, '/statistics')['TotalUncompressedSize'])) |
173 | 254 |
255 i = DoGet(_REMOTE, '/instances/%s/simplified-tags' % instance) | |
3 | 256 self.assertEqual('20070101', i['StudyDate']) |
173 | 257 self.assertEqual('KNIX', i['PatientName']) |
258 | |
259 if IsOrthancVersionAbove(_REMOTE, 1, 4, 2): | |
260 # Overwriting | |
261 self.assertEqual('Success', u['Status']) | |
262 else: | |
263 self.assertEqual('AlreadyStored', u['Status']) | |
264 | |
265 u = UploadInstance(_REMOTE, 'DummyCT-overwrite.dcm') | |
266 self.assertEqual(1, len(DoGet(_REMOTE, '/patients'))) | |
267 self.assertEqual(1, len(DoGet(_REMOTE, '/studies'))) | |
268 self.assertEqual(1, len(DoGet(_REMOTE, '/series'))) | |
269 self.assertEqual(1, len(DoGet(_REMOTE, '/instances'))) | |
270 | |
271 if IsOrthancVersionAbove(_REMOTE, 1, 4, 2): | |
272 # Overwriting | |
273 self.assertEqual('Success', u['Status']) | |
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274 if IsOrthancVersionAbove(_REMOTE, 1, 9, 1): |
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275 j2 = 0 |
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276 else: |
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277 j2 = int(DoGet(_REMOTE, '/instances/%s/attachments/dicom-as-json/size' % instance)) |
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278 self.assertNotEqual(j, j2) |
173 | 279 s2 = sizeOverwrite + j2 |
280 self.assertNotEqual(s, s2) | |
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281 if isCompressed: |
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282 self.assertGreater(s2, int(DoGet(_REMOTE, '/statistics')['TotalDiskSize'])) |
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283 else: |
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284 self.assertEqual(s2, int(DoGet(_REMOTE, '/statistics')['TotalDiskSize'])) |
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285 |
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286 self.assertEqual(s2, int(DoGet(_REMOTE, '/statistics')['TotalUncompressedSize'])) |
173 | 287 i = DoGet(_REMOTE, '/instances/%s/simplified-tags' % instance) |
288 self.assertEqual('ANOTHER', i['PatientName']) | |
289 else: | |
290 self.assertEqual('AlreadyStored', u['Status']) | |
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291 self.assertEqual(s, int(DoGet(_REMOTE, '/statistics')['TotalDiskSize'])) |
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292 self.assertEqual(s, int(DoGet(_REMOTE, '/statistics')['TotalUncompressedSize'])) |
3 | 293 |
5 | 294 def test_upload_2(self): |
3 | 295 i = UploadInstance(_REMOTE, 'DummyCT.dcm')['ID'] |
296 instance = DoGet(_REMOTE, '/instances/%s' % i) | |
297 self.assertEqual(i, instance['ID']) | |
298 self.assertEqual('1.2.840.113619.2.176.2025.1499492.7040.1171286242.109', | |
299 instance['MainDicomTags']['SOPInstanceUID']) | |
300 | |
301 series = DoGet(_REMOTE, '/series/%s' % instance['ParentSeries']) | |
302 self.assertEqual('1.2.840.113619.2.176.2025.1499492.7391.1171285944.394', | |
303 series['MainDicomTags']['SeriesInstanceUID']) | |
304 | |
305 study = DoGet(_REMOTE, '/studies/%s' % series['ParentStudy']) | |
306 self.assertEqual('1.2.840.113619.2.176.2025.1499492.7391.1171285944.390', | |
307 study['MainDicomTags']['StudyInstanceUID']) | |
308 | |
309 patient = DoGet(_REMOTE, '/patients/%s' % study['ParentPatient']) | |
310 self.assertEqual('ozp00SjY2xG', | |
311 patient['MainDicomTags']['PatientID']) | |
312 | |
313 dicom = DoGet(_REMOTE, '/instances/%s/file' % instance['ID']) | |
314 self.assertEqual(2472, len(dicom)) | |
315 self.assertEqual('3e29b869978b6db4886355a2b1132124', ComputeMD5(dicom)) | |
316 self.assertEqual(1, len(DoGet(_REMOTE, '/instances/%s/frames' % i))) | |
317 self.assertEqual('TWINOW', DoGet(_REMOTE, '/instances/%s/simplified-tags' % i)['StationName']) | |
318 self.assertEqual('TWINOW', DoGet(_REMOTE, '/instances/%s/tags' % i)['0008,1010']['Value']) | |
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319 self.assertEqual('TWINOW', DoGet(_REMOTE, '/instances/%s/tags?simplify' % i)['StationName']) |
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320 self.assertEqual('TWINOW', DoGet(_REMOTE, '/instances/%s/tags?short' % i)['0008,1010']) |
3 | 321 |
322 | |
5 | 323 def test_images(self): |
324 i = UploadInstance(_REMOTE, 'Phenix/IM-0001-0001.dcm')['ID'] | |
325 self.assertEqual(1, len(DoGet(_REMOTE, '/instances/%s/frames' % i))) | |
3 | 326 |
5 | 327 im = GetImage(_REMOTE, '/instances/%s/preview' % i) |
328 self.assertEqual("L", im.mode) | |
329 self.assertEqual(512, im.size[0]) | |
330 self.assertEqual(358, im.size[1]) | |
331 | |
332 im = GetImage(_REMOTE, '/instances/%s/image-uint8' % i) | |
333 self.assertEqual("L", im.mode) | |
334 self.assertEqual(512, im.size[0]) | |
335 self.assertEqual(358, im.size[1]) | |
336 | |
337 im = GetImage(_REMOTE, '/instances/%s/image-uint16' % i) | |
338 self.assertEqual(512, im.size[0]) | |
339 self.assertEqual(358, im.size[1]) | |
340 | |
341 im = GetImage(_REMOTE, '/instances/%s/frames/0/preview' % i) | |
342 self.assertEqual("L", im.mode) | |
343 self.assertEqual(512, im.size[0]) | |
344 self.assertEqual(358, im.size[1]) | |
345 | |
346 im = GetImage(_REMOTE, '/instances/%s/frames/0/image-uint8' % i) | |
347 self.assertEqual("L", im.mode) | |
348 self.assertEqual(512, im.size[0]) | |
349 self.assertEqual(358, im.size[1]) | |
350 | |
351 im = GetImage(_REMOTE, '/instances/%s/frames/0/image-uint16' % i) | |
352 self.assertEqual(512, im.size[0]) | |
353 self.assertEqual(358, im.size[1]) | |
64 | 354 |
355 # This is Little Endian Explicit | |
356 self.assertEqual('1.2.840.10008.1.2.1', DoGet(_REMOTE, '/instances/%s/header?simplify' % i)['TransferSyntaxUID']) | |
357 | |
6 | 358 |
359 def test_hierarchy(self): | |
360 UploadFolder(_REMOTE, 'Brainix/Epi') | |
361 UploadFolder(_REMOTE, 'Brainix/Flair') | |
362 UploadFolder(_REMOTE, 'Knee/T1') | |
363 UploadFolder(_REMOTE, 'Knee/T2') | |
364 | |
365 p = DoGet(_REMOTE, '/patients') | |
366 s = DoGet(_REMOTE, '/studies') | |
367 t = DoGet(_REMOTE, '/series') | |
368 self.assertEqual(2, len(p)) | |
369 self.assertEqual(2, len(s)) | |
370 self.assertEqual(4, len(t)) | |
371 self.assertEqual(94, len(DoGet(_REMOTE, '/instances'))) | |
372 | |
373 brainixPatient = '16738bc3-e47ed42a-43ce044c-a3414a45-cb069bd0' | |
374 brainixStudy = '27f7126f-4f66fb14-03f4081b-f9341db2-53925988' | |
375 brainixEpi = '2ac1316d-3e432022-62eabff2-c59f5475-9b1ac3f8' | |
376 brainixFlair = '1e2c125c-411b8e86-3f4fe68e-a7584dd3-c6da78f0' | |
377 | |
378 kneePatient = 'ca29faea-b6a0e17f-067743a1-8b778011-a48b2a17' | |
379 kneeStudy = '0a9b3153-2512774b-2d9580de-1fc3dcf6-3bd83918' | |
380 kneeT1 = '6de73705-c4e65c1b-9d9ea1b5-cabcd8e7-f15e4285' | |
381 kneeT2 = 'bbf7a453-0d34251a-03663b55-46bb31b9-ffd74c59' | |
382 | |
383 self.assertTrue(brainixPatient in p) | |
384 self.assertTrue(kneePatient in p) | |
385 self.assertTrue(brainixStudy in s) | |
386 self.assertTrue(kneeStudy in s) | |
387 self.assertTrue(brainixEpi in t) | |
388 self.assertTrue(brainixFlair in t) | |
389 self.assertTrue(kneeT1 in t) | |
390 self.assertTrue(kneeT2 in t) | |
391 | |
392 self.assertEqual(44, len(DoGet(_REMOTE, '/patients/%s/instances' % brainixPatient))) | |
393 self.assertEqual(2, len(DoGet(_REMOTE, '/patients/%s/series' % brainixPatient))) | |
394 self.assertEqual(1, len(DoGet(_REMOTE, '/patients/%s/studies' % brainixPatient))) | |
395 | |
396 self.assertEqual(50, len(DoGet(_REMOTE, '/patients/%s/instances' % kneePatient))) | |
397 self.assertEqual(2, len(DoGet(_REMOTE, '/patients/%s/series' % kneePatient))) | |
398 self.assertEqual(1, len(DoGet(_REMOTE, '/patients/%s/studies' % kneePatient))) | |
399 | |
400 self.assertEqual(2, len(DoGet(_REMOTE, '/studies/%s/series' % brainixStudy))) | |
401 self.assertEqual(44, len(DoGet(_REMOTE, '/studies/%s/instances' % brainixStudy))) | |
402 | |
403 self.assertEqual(2, len(DoGet(_REMOTE, '/studies/%s/series' % kneeStudy))) | |
404 self.assertEqual(50, len(DoGet(_REMOTE, '/studies/%s/instances' % kneeStudy))) | |
405 | |
406 self.assertEqual(22, len(DoGet(_REMOTE, '/series/%s/instances' % brainixEpi))) | |
407 self.assertEqual(22, len(DoGet(_REMOTE, '/series/%s/instances' % brainixFlair))) | |
408 self.assertEqual(24, len(DoGet(_REMOTE, '/series/%s/instances' % kneeT1))) | |
409 self.assertEqual(26, len(DoGet(_REMOTE, '/series/%s/instances' % kneeT2))) | |
410 | |
411 for patient in p: | |
412 for study in DoGet(_REMOTE, '/patients/%s/studies' % patient): | |
413 self.assertEqual(patient, study['ParentPatient']) | |
414 for series in DoGet(_REMOTE, '/studies/%s/series' % study['ID']): | |
415 self.assertEqual(study['ID'], series['ParentStudy']) | |
211 | 416 self.assertEqual('Unknown', series['Status']) |
6 | 417 for instance in DoGet(_REMOTE, '/series/%s/instances' % series['ID']): |
418 self.assertEqual(series['ID'], instance['ParentSeries']) | |
419 | |
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420 if not IsOrthancVersionAbove(_REMOTE, 1, 9, 1): |
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421 # The "dicom-as-json" attachment was removed in Orthanc 1.9.1 |
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422 self.assertEqual(json.dumps(DoGet(_REMOTE, '/instances/%s/attachments/dicom-as-json/data' % instance['ID'])), |
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423 json.dumps(DoGet(_REMOTE, '/instances/%s/tags' % instance['ID']))) |
6 | 424 |
425 | |
426 r = DoDelete(_REMOTE, "/studies/%s" % brainixStudy)['RemainingAncestor'] | |
427 self.assertEqual(1, len(DoGet(_REMOTE, '/patients'))) | |
428 self.assertEqual(1, len(DoGet(_REMOTE, '/studies'))) | |
429 self.assertEqual(2, len(DoGet(_REMOTE, '/series'))) | |
430 self.assertEqual(50, len(DoGet(_REMOTE, '/instances'))) | |
431 self.assertEqual(None, r) | |
432 | |
433 r = DoDelete(_REMOTE, "/series/%s" % kneeT2)['RemainingAncestor'] | |
434 self.assertEqual(1, len(DoGet(_REMOTE, '/patients'))) | |
435 self.assertEqual(1, len(DoGet(_REMOTE, '/studies'))) | |
436 self.assertEqual(1, len(DoGet(_REMOTE, '/series'))) | |
437 self.assertEqual(24, len(DoGet(_REMOTE, '/instances'))) | |
438 self.assertEqual('Study', r['Type']) | |
439 self.assertEqual(kneeStudy, r['ID']) | |
440 | |
441 r = DoDelete(_REMOTE, "/instances/%s" % DoGet(_REMOTE, '/instances')[0])['RemainingAncestor'] | |
442 self.assertEqual(1, len(DoGet(_REMOTE, '/patients'))) | |
443 self.assertEqual(1, len(DoGet(_REMOTE, '/studies'))) | |
444 self.assertEqual(1, len(DoGet(_REMOTE, '/series'))) | |
445 self.assertEqual(23, len(DoGet(_REMOTE, '/instances'))) | |
446 self.assertEqual('Series', r['Type']) | |
447 self.assertEqual(kneeT1, r['ID']) | |
448 | |
449 r = DoDelete(_REMOTE, "/patients/%s" % kneePatient)['RemainingAncestor'] | |
450 self.assertEqual(0, len(DoGet(_REMOTE, '/patients'))) | |
451 self.assertEqual(0, len(DoGet(_REMOTE, '/studies'))) | |
452 self.assertEqual(0, len(DoGet(_REMOTE, '/series'))) | |
453 self.assertEqual(0, len(DoGet(_REMOTE, '/instances'))) | |
454 self.assertEqual(None, r) | |
455 | |
456 DropOrthanc(_REMOTE) | |
457 self.assertEqual('0', DoGet(_REMOTE, '/statistics')['TotalDiskSize']) | |
458 self.assertEqual('0', DoGet(_REMOTE, '/statistics')['TotalUncompressedSize']) | |
7 | 459 |
213
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460 def test_delete_cascade(self): |
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461 # make sure deleting the last instance of a study deletes the series, study and patient |
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462 |
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463 self.assertEqual(0, len(DoGet(_REMOTE, '/instances'))) # make sure orthanc is empty when starting the test |
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464 a = UploadInstance(_REMOTE, 'DummyCT.dcm')['ID'] |
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465 self.assertEqual(1, len(DoGet(_REMOTE, '/instances'))) |
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466 self.assertEqual(1, len(DoGet(_REMOTE, '/series'))) |
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467 self.assertEqual(1, len(DoGet(_REMOTE, '/studies'))) |
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468 self.assertEqual(1, len(DoGet(_REMOTE, '/patients'))) |
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469 |
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470 DoDelete(_REMOTE, '/instances/%s' % a) |
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471 |
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472 self.assertEqual(0, len(DoGet(_REMOTE, '/instances'))) |
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473 self.assertEqual(0, len(DoGet(_REMOTE, '/series'))) |
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474 self.assertEqual(0, len(DoGet(_REMOTE, '/studies'))) |
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475 self.assertEqual(0, len(DoGet(_REMOTE, '/patients'))) |
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476 |
7 | 477 |
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478 def test_multiframe(self): |
7 | 479 i = UploadInstance(_REMOTE, 'Multiframe.dcm')['ID'] |
480 self.assertEqual(76, len(DoGet(_REMOTE, '/instances/%s/frames' % i))) | |
481 | |
482 im = GetImage(_REMOTE, '/instances/%s/frames/0/preview' % i) | |
483 self.assertEqual("L", im.mode) | |
484 self.assertEqual(512, im.size[0]) | |
485 self.assertEqual(512, im.size[1]) | |
486 | |
487 DoGet(_REMOTE, '/instances/%s/frames/0/image-uint8' % i) | |
488 DoGet(_REMOTE, '/instances/%s/frames/0/image-uint16' % i) | |
489 DoGet(_REMOTE, '/instances/%s/frames/75/preview' % i) | |
490 self.assertRaises(Exception, lambda: DoGet(_REMOTE, '/instances/%s/frames/aaa/preview' % i)) | |
491 self.assertRaises(Exception, lambda: DoGet(_REMOTE, '/instances/%s/frames/76/preview' % i)) | |
492 | |
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493 |
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494 def test_changes(self): |
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495 # Check emptiness |
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496 c = DoGet(_REMOTE, '/changes') |
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497 self.assertEqual(0, len(c['Changes'])) |
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498 #self.assertEqual(0, c['Last']) # Not true anymore for Orthanc >= 1.5.2 |
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499 self.assertTrue(c['Done']) |
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500 c = DoGet(_REMOTE, '/changes?last') |
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501 self.assertEqual(0, len(c['Changes'])) |
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502 #self.assertEqual(0, c['Last']) # Not true anymore for Orthanc >= 1.5.2 |
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503 self.assertTrue(c['Done']) |
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504 |
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505 # Add 1 instance |
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506 i = UploadInstance(_REMOTE, 'Brainix/Flair/IM-0001-0001.dcm')['ID'] |
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507 c = DoGet(_REMOTE, '/changes') |
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508 begin = c['Last'] |
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509 self.assertEqual(4, len(c['Changes'])) |
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510 self.assertTrue(c['Done']) |
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511 self.assertEqual(c['Changes'][-1]['Seq'], c['Last']) |
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512 |
390
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513 # Check the order in which the creation events are reported |
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514 self.assertEqual(c['Changes'][0]['ChangeType'], 'NewInstance') |
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515 self.assertEqual(c['Changes'][1]['ChangeType'], 'NewSeries') |
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516 self.assertEqual(c['Changes'][2]['ChangeType'], 'NewStudy') |
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517 self.assertEqual(c['Changes'][3]['ChangeType'], 'NewPatient') |
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518 |
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519 c = DoGet(_REMOTE, '/changes?last') |
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520 self.assertEqual(1, len(c['Changes'])) |
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521 self.assertEqual(begin, c['Last']) |
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522 self.assertTrue(c['Done']) |
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523 c = DoGet(_REMOTE, '/changes?limit=1&since=' + str(begin - 1)) |
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524 self.assertEqual(1, len(c['Changes'])) |
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525 self.assertEqual(begin, c['Last']) |
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526 self.assertTrue(c['Done']) |
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527 c = DoGet(_REMOTE, '/changes?limit=1&since=' + str(begin - 2)) |
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528 self.assertEqual(1, len(c['Changes'])) |
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529 self.assertEqual(begin - 1, c['Last']) |
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530 self.assertFalse(c['Done']) |
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531 c = DoGet(_REMOTE, '/changes?limit=1&since=' + str(begin - 3)) |
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532 self.assertEqual(1, len(c['Changes'])) |
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533 self.assertEqual(begin - 2, c['Last']) |
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534 self.assertFalse(c['Done']) |
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535 |
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536 UploadFolder(_REMOTE, 'Knee/T1') |
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537 UploadFolder(_REMOTE, 'Knee/T2') |
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538 since = begin |
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539 countPatients = 0 |
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540 countStudies = 0 |
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541 countSeries = 0 |
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542 countInstances = 0 |
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543 completed = 0 |
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544 while True: |
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545 c = DoGet(_REMOTE, '/changes', { 'since' : since, 'limit' : 3 }) |
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546 since = c['Last'] |
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547 for i in c['Changes']: |
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548 if i['ResourceType'] == 'Instance': |
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549 countInstances += 1 |
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550 if i['ResourceType'] == 'Patient': |
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551 countPatients += 1 |
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552 if i['ResourceType'] == 'Study': |
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553 countStudies += 1 |
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554 if i['ResourceType'] == 'Series': |
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555 countSeries += 1 |
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556 if i['ChangeType'] == 'NewInstance': |
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557 countInstances += 1 |
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558 if i['ChangeType'] == 'NewPatient': |
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559 countPatients += 1 |
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560 if i['ChangeType'] == 'NewStudy': |
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561 countStudies += 1 |
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562 if i['ChangeType'] == 'NewSeries': |
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563 countSeries += 1 |
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564 if i['ChangeType'] == 'CompletedSeries': |
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565 completed += 1 |
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566 self.assertTrue('ID' in i) |
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567 self.assertTrue('Path' in i) |
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568 self.assertTrue('Seq' in i) |
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569 if c['Done']: |
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570 break |
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571 |
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572 self.assertEqual(2 * 50, countInstances) |
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573 self.assertEqual(2 * 1, countPatients) |
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574 self.assertEqual(2 * 1, countStudies) |
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575 self.assertEqual(2 * 2, countSeries) |
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576 self.assertEqual(0, completed) |
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577 |
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578 |
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579 def test_archive(self): |
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580 UploadInstance(_REMOTE, 'Knee/T1/IM-0001-0001.dcm') |
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581 UploadInstance(_REMOTE, 'Knee/T2/IM-0001-0001.dcm') |
192 | 582 knee = 'ca29faea-b6a0e17f-067743a1-8b778011-a48b2a17' |
583 | |
584 z = GetArchive(_REMOTE, '/patients/%s/archive' % knee) | |
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585 self.assertEqual(2, len(z.namelist())) |
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586 |
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587 z = GetArchive(_REMOTE, '/studies/%s/archive' % DoGet(_REMOTE, '/studies')[0]) |
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588 self.assertEqual(2, len(z.namelist())) |
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589 |
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590 z = GetArchive(_REMOTE, '/series/%s/archive' % DoGet(_REMOTE, '/series')[0]) |
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591 self.assertEqual(1, len(z.namelist())) |
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592 |
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593 UploadInstance(_REMOTE, 'Brainix/Flair/IM-0001-0001.dcm') |
192 | 594 brainix = '16738bc3-e47ed42a-43ce044c-a3414a45-cb069bd0' |
595 | |
596 z = GetArchive(_REMOTE, '/patients/%s/archive' % knee) | |
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597 self.assertEqual(2, len(z.namelist())) |
192 | 598 |
599 z = PostArchive(_REMOTE, '/tools/create-archive', { | |
600 'Resources' : [ brainix, knee ] | |
601 }) | |
602 self.assertEqual(3, len(z.namelist())) | |
603 | |
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604 |
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605 def test_media_archive(self): |
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606 UploadInstance(_REMOTE, 'Knee/T1/IM-0001-0001.dcm') |
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607 UploadInstance(_REMOTE, 'Knee/T2/IM-0001-0001.dcm') |
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608 |
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609 z = GetArchive(_REMOTE, '/patients/%s/media' % DoGet(_REMOTE, '/patients')[0]) |
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610 self.assertEqual(3, len(z.namelist())) |
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611 self.assertTrue('IMAGES/IM0' in z.namelist()) |
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612 self.assertTrue('IMAGES/IM1' in z.namelist()) |
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613 self.assertTrue('DICOMDIR' in z.namelist()) |
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614 |
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615 try: |
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616 os.remove('/tmp/DICOMDIR') |
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617 except: |
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618 # The file does not exist |
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619 pass |
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620 |
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621 z.extract('DICOMDIR', '/tmp') |
45 | 622 a = subprocess.check_output([ FindExecutable('dciodvfy'), '/tmp/DICOMDIR' ], |
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623 stderr = subprocess.STDOUT).split('\n') |
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624 self.assertEqual(3, len(a)) |
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625 self.assertTrue(a[0].startswith('Warning')) |
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626 self.assertEqual('BasicDirectory', a[1]) |
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627 self.assertEqual('', a[2]) |
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628 |
45 | 629 a = subprocess.check_output([ FindExecutable('dcentvfy'), '/tmp/DICOMDIR' ], |
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630 stderr = subprocess.STDOUT).split('\n') |
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631 self.assertEqual(1, len(a)) |
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632 self.assertEqual('', a[0]) |
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633 |
45 | 634 a = subprocess.check_output([ FindExecutable('dcm2xml'), '/tmp/DICOMDIR' ]) |
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635 self.assertTrue(re.search('1.3.46.670589.11.17521.5.0.3124.2008081908590448738', a) != None) |
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636 self.assertTrue(re.search('1.3.46.670589.11.17521.5.0.3124.2008081909113806560', a) != None) |
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637 |
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638 os.remove('/tmp/DICOMDIR') |
10 | 639 |
640 | |
641 def test_protection(self): | |
642 UploadInstance(_REMOTE, 'Knee/T1/IM-0001-0001.dcm') | |
643 UploadInstance(_REMOTE, 'Brainix/Flair/IM-0001-0001.dcm') | |
644 self.assertEqual(2, len(DoGet(_REMOTE, '/patients'))) | |
645 a = DoGet(_REMOTE, '/patients')[0] | |
646 b = DoGet(_REMOTE, '/patients')[1] | |
647 self.assertEqual(0, DoGet(_REMOTE, '/patients/%s/protected' % a)) | |
648 DoPut(_REMOTE, '/patients/%s/protected' % a, '0', 'text/plain') | |
649 self.assertEqual(0, DoGet(_REMOTE, '/patients/%s/protected' % a)) | |
650 DoPut(_REMOTE, '/patients/%s/protected' % a, '1', 'text/plain') | |
651 self.assertEqual(1, DoGet(_REMOTE, '/patients/%s/protected' % a)) | |
652 DoPut(_REMOTE, '/patients/%s/protected' % a, '0', 'text/plain') | |
653 self.assertEqual(0, DoGet(_REMOTE, '/patients/%s/protected' % a)) | |
654 | |
655 | |
12 | 656 def test_raw_tags(self): |
10 | 657 i = UploadInstance(_REMOTE, 'PrivateTags.dcm')['ID'] |
658 | |
659 dicom = DoGet(_REMOTE, '/instances/%s/file' % i) | |
660 self.assertEqual('1a7c56cb02d6e742cc9c856a8ac182e3', ComputeMD5(dicom)) | |
661 | |
662 s = '/instances/%s/content/' % i | |
663 | |
664 self.assertEqual('LOGIQBOOK', DoGet(_REMOTE, s + '0008-1010').strip()) | |
665 self.assertRaises(Exception, lambda: DoGet(_REMOTE, s + '0008-1011')) | |
666 | |
667 self.assertEqual('Abdomen', DoGet(_REMOTE, s + '7fe1-1001/0/7fe1-1008/0/7fe1-1057').strip()) | |
668 self.assertEqual('cla_3c', DoGet(_REMOTE, s + '7fe1-1001/0/7fe1-1008/8/7fe1-1057').strip()) | |
669 | |
670 UploadInstance(_REMOTE, 'Brainix/Epi/IM-0001-0001.dcm') | |
671 UploadInstance(_REMOTE, 'Brainix/Flair/IM-0001-0001.dcm') | |
672 UploadInstance(_REMOTE, 'Knee/T1/IM-0001-0001.dcm') | |
673 UploadInstance(_REMOTE, 'Knee/T2/IM-0001-0001.dcm') | |
674 | |
675 for i in DoGet(_REMOTE, '/instances'): | |
676 aid = DoGet(_REMOTE, '/instances/%s' % i)['MainDicomTags']['SOPInstanceUID'] | |
677 self.assertEqual(aid, DoGet(_REMOTE, '/instances/%s/content/0008-0018' % i).replace(chr(0), '')) | |
678 | |
679 | |
680 def test_raw_tags_mdn(self): | |
681 # Bug reported by Cyril Paulus | |
682 i = UploadInstance(_REMOTE, 'PrivateMDNTags.dcm')['ID'] | |
683 self.assertAlmostEqual(0.000027, DoGet(_REMOTE, '/instances/%s/content/7053-1000' % i)) | |
684 | |
685 | |
686 def test_modify_instance(self): | |
687 i = UploadInstance(_REMOTE, 'PrivateTags.dcm')['ID'] | |
688 modified = DoPost(_REMOTE, '/instances/%s/modify' % i, | |
689 json.dumps({ | |
690 "Replace" : { | |
691 "PatientName" : "hello", | |
692 #"PatientID" : "world" | |
693 }, | |
694 "Remove" : [ "StationName" ], | |
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695 "RemovePrivateTags" : True |
10 | 696 }), |
697 'application/json') | |
698 j = DoPost(_REMOTE, '/instances', modified, 'application/dicom')['ID'] | |
699 | |
700 self.assertNotEqual('hello', DoGet(_REMOTE, '/instances/%s/content/0010-0010' % i).strip()) | |
701 #self.assertNotEqual('world', DoGet(_REMOTE, '/instances/%s/content/0010-0020' % i).strip()) | |
83 | 702 self.assertEqual('LOGIQBOOK', DoGet(_REMOTE, '/instances/%s/content/0008-1010' % i).strip()) |
10 | 703 DoGet(_REMOTE, '/instances/%s/content/6003-1010' % i) # Some private tag |
704 | |
705 self.assertEqual('hello', DoGet(_REMOTE, '/instances/%s/content/0010-0010' % j).strip()) | |
706 #self.assertEqual('world', DoGet(_REMOTE, '/instances/%s/content/0010-0020' % j).strip()) | |
707 self.assertRaises(Exception, lambda: DoGet(_REMOTE, '/instances/%s/content/0008-1010' % j)) | |
708 self.assertRaises(Exception, lambda: DoGet(_REMOTE, '/instances/%s/content/6003-1010' % j)) | |
709 | |
710 | |
711 def test_modify_series(self): | |
712 # Upload 4 images from the same series | |
713 for i in range(4): | |
714 UploadInstance(_REMOTE, 'Brainix/Epi/IM-0001-000%d.dcm' % (i + 1)) | |
715 | |
716 origSeries = DoGet(_REMOTE, '/series')[0] | |
717 newSeries = DoPost(_REMOTE, '/series/%s/modify' % origSeries, | |
718 '{"Replace":{"PatientName":"Jodogne"}}', | |
719 'application/json')['ID'] | |
720 | |
721 self.assertEqual(origSeries, DoGet(_REMOTE, '/series/%s' % newSeries)['ModifiedFrom']) | |
722 instances = DoGet(_REMOTE, '/series/%s' % newSeries)['Instances'] | |
723 self.assertEqual(4, len(instances)) | |
724 for i in instances: | |
725 j = DoGet(_REMOTE, '/instances/%s' % i)['ModifiedFrom'] | |
726 self.assertEqual(newSeries, DoGet(_REMOTE, '/instances/%s' % i)['ParentSeries']) | |
727 self.assertEqual(origSeries, DoGet(_REMOTE, '/instances/%s' % j)['ParentSeries']) | |
728 | |
729 self.assertEqual('Jodogne', DoGet(_REMOTE, '/instances/%s/content/0010-0010' % i).strip()) | |
730 self.assertNotEqual('Jodogne', DoGet(_REMOTE, '/instances/%s/content/0010-0010' % j).strip()) | |
731 | |
732 | |
733 def test_modify_study(self): | |
734 # Upload 4 images from the 2 series of the same study | |
735 for i in range(4): | |
736 UploadInstance(_REMOTE, 'Brainix/Flair/IM-0001-000%d.dcm' % (i + 1)) | |
737 UploadInstance(_REMOTE, 'Brainix/Epi/IM-0001-000%d.dcm' % (i + 1)) | |
738 | |
739 origStudy = DoGet(_REMOTE, '/studies')[0] | |
740 newStudy = DoPost(_REMOTE, '/studies/%s/modify' % origStudy, | |
741 '{"Replace":{"PatientName":"Jodogne"}}', | |
742 'application/json')['ID'] | |
743 | |
744 self.assertEqual(origStudy, DoGet(_REMOTE, '/studies/%s' % newStudy)['ModifiedFrom']) | |
745 series = DoGet(_REMOTE, '/studies/%s' % newStudy)['Series'] | |
746 self.assertEqual(2, len(series)) | |
747 for s in series: | |
748 ss = DoGet(_REMOTE, '/series/%s' % s)['ModifiedFrom'] | |
749 self.assertEqual(newStudy, DoGet(_REMOTE, '/series/%s' % s)['ParentStudy']) | |
750 self.assertEqual(origStudy, DoGet(_REMOTE, '/series/%s' % ss)['ParentStudy']) | |
751 | |
752 instances = DoGet(_REMOTE, '/series/%s' % s)['Instances'] | |
753 for i in instances: | |
754 j = DoGet(_REMOTE, '/instances/%s' % i)['ModifiedFrom'] | |
755 self.assertEqual(s, DoGet(_REMOTE, '/instances/%s' % i)['ParentSeries']) | |
756 self.assertEqual(ss, DoGet(_REMOTE, '/instances/%s' % j)['ParentSeries']) | |
757 | |
758 self.assertEqual('Jodogne', DoGet(_REMOTE, '/instances/%s/content/0010-0010' % i).strip()) | |
759 self.assertNotEqual('Jodogne', DoGet(_REMOTE, '/instances/%s/content/0010-0010' % j).strip()) | |
760 | |
761 | |
762 def test_anonymize_series(self): | |
763 # Upload 4 images from the same series | |
764 for i in range(4): | |
765 UploadInstance(_REMOTE, 'Brainix/Epi/IM-0001-000%d.dcm' % (i + 1)) | |
766 | |
767 origSeries = DoGet(_REMOTE, '/series')[0] | |
768 newSeries = DoPost(_REMOTE, '/series/%s/anonymize' % origSeries, | |
769 '{}', | |
770 'application/json')['ID'] | |
771 | |
772 self.assertEqual(origSeries, DoGet(_REMOTE, '/series/%s' % newSeries)['AnonymizedFrom']) | |
773 instances = DoGet(_REMOTE, '/series/%s' % newSeries)['Instances'] | |
774 self.assertEqual(4, len(instances)) | |
775 for i in instances: | |
776 j = DoGet(_REMOTE, '/instances/%s' % i)['AnonymizedFrom'] | |
777 self.assertEqual(newSeries, DoGet(_REMOTE, '/instances/%s' % i)['ParentSeries']) | |
778 self.assertEqual(origSeries, DoGet(_REMOTE, '/instances/%s' % j)['ParentSeries']) | |
779 | |
780 DoGet(_REMOTE, '/instances/%s/content/0008-1010' % j) | |
781 self.assertRaises(Exception, lambda: DoGet(_REMOTE, '/instances/%s/content/0008-1010' % i)) | |
782 | |
783 | |
784 def test_anonymize_study(self): | |
785 # Upload 4 images from the 2 series of the same study | |
786 for i in range(4): | |
787 UploadInstance(_REMOTE, 'Brainix/Flair/IM-0001-000%d.dcm' % (i + 1)) | |
788 UploadInstance(_REMOTE, 'Brainix/Epi/IM-0001-000%d.dcm' % (i + 1)) | |
789 | |
790 origStudy = DoGet(_REMOTE, '/studies')[0] | |
791 newStudy = DoPost(_REMOTE,'/studies/%s/anonymize' % origStudy, | |
792 '{"Replace":{"PatientName":"Jodogne"}}', | |
793 'application/json')['ID'] | |
794 | |
795 self.assertEqual(origStudy, DoGet(_REMOTE, '/studies/%s' % newStudy)['AnonymizedFrom']) | |
796 series = DoGet(_REMOTE, '/studies/%s' % newStudy)['Series'] | |
797 self.assertEqual(2, len(series)) | |
798 for s in series: | |
799 ss = DoGet(_REMOTE, '/series/%s' % s)['AnonymizedFrom'] | |
800 self.assertEqual(newStudy, DoGet(_REMOTE, '/series/%s' % s)['ParentStudy']) | |
801 self.assertEqual(origStudy, DoGet(_REMOTE, '/series/%s' % ss)['ParentStudy']) | |
802 | |
803 instances = DoGet(_REMOTE, '/series/%s' % s)['Instances'] | |
804 for i in instances: | |
805 j = DoGet(_REMOTE, '/instances/%s' % i)['AnonymizedFrom'] | |
806 self.assertEqual(s, DoGet(_REMOTE, '/instances/%s' % i)['ParentSeries']) | |
807 self.assertEqual(ss, DoGet(_REMOTE, '/instances/%s' % j)['ParentSeries']) | |
808 | |
809 self.assertEqual('Jodogne', DoGet(_REMOTE, '/instances/%s/content/0010-0010' % i).strip()) | |
810 self.assertNotEqual('Jodogne', DoGet(_REMOTE, '/instances/%s/content/0010-0010' % j).strip()) | |
11 | 811 |
812 | |
813 | |
814 def test_storescu(self): | |
815 # Check emptiness | |
816 e = DoGet(_REMOTE, '/exports') | |
817 self.assertEqual(0, len(e['Exports'])) | |
818 self.assertEqual(0, e['Last']) | |
819 self.assertTrue(e['Done']) | |
820 e = DoGet(_REMOTE, '/exports?last') | |
821 self.assertEqual(0, len(e['Exports'])) | |
822 self.assertEqual(0, e['Last']) | |
823 self.assertTrue(e['Done']) | |
824 | |
825 # Add 1 instance | |
826 i = UploadInstance(_REMOTE, 'DummyCT.dcm')['ID'] | |
827 self.assertEqual(0, len(DoGet(_LOCAL, '/patients'))) | |
828 | |
829 # Export the instance | |
830 j = DoPost(_REMOTE, '/modalities/orthanctest/store', str(i), 'text/plain') # instance | |
831 self.assertEqual(1, len(DoGet(_LOCAL, '/patients'))) | |
832 self.assertEqual(1, len(DoGet(_LOCAL, '/studies'))) | |
833 self.assertEqual(1, len(DoGet(_LOCAL, '/series'))) | |
834 self.assertEqual(1, len(DoGet(_LOCAL, '/instances'))) | |
835 | |
836 e = DoGet(_REMOTE, '/exports') | |
837 self.assertEqual(1, len(e['Exports'])) | |
838 self.assertTrue(e['Done']) | |
839 self.assertEqual(e['Exports'][-1]['Seq'], e['Last']) | |
840 e = DoGet(_REMOTE, '/exports?limit=1') | |
841 self.assertEqual(1, len(e['Exports'])) | |
842 self.assertTrue(e['Done']) | |
843 self.assertEqual(e['Exports'][-1]['Seq'], e['Last']) | |
844 e = DoGet(_REMOTE, '/exports?last') | |
845 self.assertEqual(1, len(e['Exports'])) | |
846 self.assertTrue(e['Done']) | |
847 self.assertEqual(e['Exports'][-1]['Seq'], e['Last']) | |
848 seqInstance = e['Last'] | |
849 | |
850 # Export the series | |
851 j = DoPost(_REMOTE, '/modalities/orthanctest/store', 'f2635388-f01d497a-15f7c06b-ad7dba06-c4c599fe', 'text/plain') | |
852 | |
853 e = DoGet(_REMOTE, '/exports') | |
854 self.assertEqual(2, len(e['Exports'])) | |
855 self.assertTrue(e['Done']) | |
856 self.assertEqual(e['Exports'][-1]['Seq'], e['Last']) | |
857 seqSeries = e['Last'] | |
858 self.assertNotEqual(seqInstance, seqSeries) | |
859 e = DoGet(_REMOTE, '/exports?limit=1&since=0') | |
860 self.assertEqual(1, len(e['Exports'])) | |
861 self.assertFalse(e['Done']) | |
862 self.assertEqual(e['Exports'][-1]['Seq'], seqInstance) | |
863 e = DoGet(_REMOTE, '/exports?limit=1&since=' + str(seqInstance)) | |
864 self.assertEqual(1, len(e['Exports'])) | |
865 self.assertTrue(e['Done']) | |
866 self.assertEqual(e['Exports'][-1]['Seq'], seqSeries) | |
867 e = DoGet(_REMOTE, '/exports?last') | |
868 self.assertEqual(1, len(e['Exports'])) | |
869 self.assertTrue(e['Done']) | |
870 self.assertEqual(e['Exports'][-1]['Seq'], seqSeries) | |
871 | |
872 # Export the study | |
873 j = DoPost(_REMOTE, '/modalities/orthanctest/store', 'b9c08539-26f93bde-c81ab0d7-bffaf2cb-a4d0bdd0', 'text/plain') | |
874 seqStudy = DoGet(_REMOTE, '/exports')['Last'] | |
875 | |
876 # Export the patient | |
877 j = DoPost(_REMOTE, '/modalities/orthanctest/store', '6816cb19-844d5aee-85245eba-28e841e6-2414fae2', 'text/plain') | |
878 self.assertEqual(1, len(DoGet(_LOCAL, '/patients'))) | |
879 self.assertEqual(1, len(DoGet(_LOCAL, '/studies'))) | |
880 self.assertEqual(1, len(DoGet(_LOCAL, '/series'))) | |
881 self.assertEqual(1, len(DoGet(_LOCAL, '/instances'))) | |
882 | |
883 e = DoGet(_REMOTE, '/exports') | |
884 self.assertEqual(4, len(e['Exports'])) | |
885 self.assertTrue(e['Done']) | |
886 self.assertEqual(e['Exports'][-1]['Seq'], e['Last']) | |
887 seqPatient = e['Last'] | |
888 self.assertNotEqual(seqInstance, seqSeries) | |
889 self.assertNotEqual(seqSeries, seqStudy) | |
890 self.assertNotEqual(seqStudy, seqPatient) | |
891 self.assertTrue(seqInstance < seqSeries) | |
892 self.assertTrue(seqSeries < seqStudy) | |
893 self.assertTrue(seqStudy < seqPatient) | |
894 e = DoGet(_REMOTE, '/exports?limit=1&since=0') | |
895 self.assertEqual(1, len(e['Exports'])) | |
896 self.assertFalse(e['Done']) | |
897 self.assertEqual(e['Exports'][-1]['Seq'], seqInstance) | |
898 e = DoGet(_REMOTE, '/exports?limit=1&since=' + str(seqInstance)) | |
899 self.assertEqual(1, len(e['Exports'])) | |
900 self.assertFalse(e['Done']) | |
901 self.assertEqual(e['Exports'][-1]['Seq'], seqSeries) | |
902 e = DoGet(_REMOTE, '/exports?limit=1&since=' + str(seqSeries)) | |
903 self.assertEqual(1, len(e['Exports'])) | |
904 self.assertFalse(e['Done']) | |
905 self.assertEqual(e['Exports'][-1]['Seq'], seqStudy) | |
906 e = DoGet(_REMOTE, '/exports?limit=1&since=' + str(seqStudy)) | |
907 self.assertEqual(1, len(e['Exports'])) | |
908 self.assertTrue(e['Done']) | |
909 self.assertEqual(e['Exports'][-1]['Seq'], seqPatient) | |
910 e = DoGet(_REMOTE, '/exports?last') | |
911 self.assertEqual(1, len(e['Exports'])) | |
912 self.assertTrue(e['Done']) | |
913 self.assertEqual(e['Exports'][-1]['Seq'], seqPatient) | |
914 | |
915 | |
916 # Check the content of the logged information | |
917 e = DoGet(_REMOTE, '/exports')['Exports'] | |
918 | |
919 if 'PatientID' in e[0]: | |
920 # Since Orthanc 0.8.6 | |
921 patient = 'PatientID' | |
922 study = 'StudyInstanceUID' | |
923 series = 'SeriesInstanceUID' | |
924 instance = 'SOPInstanceUID' | |
925 else: | |
926 # Up to Orthanc 0.8.5 | |
927 patient = 'PatientId' | |
928 study = 'StudyInstanceUid' | |
929 series = 'SeriesInstanceUid' | |
930 instance = 'SopInstanceUid' | |
931 | |
932 for k in range(4): | |
933 self.assertTrue('Date' in e[k]) | |
934 self.assertTrue('Seq' in e[k]) | |
935 self.assertEqual('orthanctest', e[k]['RemoteModality']) | |
936 | |
937 self.assertEqual(10, len(e[0])) | |
938 self.assertEqual('Instance', e[0]['ResourceType']) | |
939 self.assertEqual('66a662ce-7430e543-bad44d47-0dc5a943-ec7a538d', e[0]['ID']) | |
940 self.assertEqual('/instances/66a662ce-7430e543-bad44d47-0dc5a943-ec7a538d', e[0]['Path']) | |
941 self.assertEqual('1.2.840.113619.2.176.2025.1499492.7040.1171286242.109', e[0][instance]) | |
942 self.assertEqual('1.2.840.113619.2.176.2025.1499492.7391.1171285944.394', e[0][series]) | |
943 self.assertEqual('1.2.840.113619.2.176.2025.1499492.7391.1171285944.390', e[0][study]) | |
944 self.assertEqual('ozp00SjY2xG', e[0][patient]) | |
945 | |
946 self.assertEqual(9, len(e[1])) | |
947 self.assertEqual('Series', e[1]['ResourceType']) | |
948 self.assertEqual('f2635388-f01d497a-15f7c06b-ad7dba06-c4c599fe', e[1]['ID']) | |
949 self.assertEqual('/series/f2635388-f01d497a-15f7c06b-ad7dba06-c4c599fe', e[1]['Path']) | |
950 self.assertEqual('1.2.840.113619.2.176.2025.1499492.7391.1171285944.394', e[1][series]) | |
951 self.assertEqual('1.2.840.113619.2.176.2025.1499492.7391.1171285944.390', e[1][study]) | |
952 self.assertEqual('ozp00SjY2xG', e[1][patient]) | |
953 | |
954 self.assertEqual(8, len(e[2])) | |
955 self.assertEqual('Study', e[2]['ResourceType']) | |
956 self.assertEqual('b9c08539-26f93bde-c81ab0d7-bffaf2cb-a4d0bdd0', e[2]['ID']) | |
957 self.assertEqual('/studies/b9c08539-26f93bde-c81ab0d7-bffaf2cb-a4d0bdd0', e[2]['Path']) | |
958 self.assertEqual('1.2.840.113619.2.176.2025.1499492.7391.1171285944.390', e[2][study]) | |
959 self.assertEqual('ozp00SjY2xG', e[2][patient]) | |
960 | |
961 self.assertEqual(7, len(e[3])) | |
962 self.assertEqual('Patient', e[3]['ResourceType']) | |
963 self.assertEqual('6816cb19-844d5aee-85245eba-28e841e6-2414fae2', e[3]['ID']) | |
964 self.assertEqual('/patients/6816cb19-844d5aee-85245eba-28e841e6-2414fae2', e[3]['Path']) | |
965 self.assertEqual('ozp00SjY2xG', e[3][patient]) | |
966 | |
967 DropOrthanc(_REMOTE) | |
968 self.assertEqual(0, len(DoGet(_REMOTE, '/exports')['Exports'])) | |
969 | |
970 | |
971 def test_store_peer(self): | |
972 self.assertEqual(0, len(DoGet(_LOCAL, '/exports')['Exports'])) | |
973 self.assertEqual(0, len(DoGet(_REMOTE, '/exports')['Exports'])) | |
974 | |
975 i = UploadInstance(_REMOTE, 'DummyCT.dcm')['ID'] | |
976 self.assertEqual(0, len(DoGet(_LOCAL, '/patients'))) | |
977 self.assertEqual(1, len(DoGet(_REMOTE, '/patients'))) | |
978 | |
979 j = DoPost(_REMOTE, '/peers/peer/store', str(i), 'text/plain') | |
980 self.assertEqual(1, len(DoGet(_LOCAL, '/patients'))) | |
981 self.assertEqual(1, len(DoGet(_REMOTE, '/patients'))) | |
982 | |
983 self.assertEqual(1, len(DoGet(_REMOTE, '/exports')['Exports'])) | |
984 | |
985 DropOrthanc(_REMOTE) | |
986 self.assertEqual(0, len(DoGet(_REMOTE, '/exports')['Exports'])) | |
987 | |
988 | |
989 def test_bulk_storescu(self): | |
990 self.assertEqual(0, len(DoGet(_LOCAL, '/patients'))) | |
991 | |
992 a = UploadInstance(_REMOTE, 'Knee/T1/IM-0001-0001.dcm') | |
993 b = UploadInstance(_REMOTE, 'Knee/T2/IM-0001-0001.dcm') | |
994 | |
995 j = DoPost(_REMOTE, '/modalities/orthanctest/store', [ a['ID'], b['ID'] ], 'application/json') | |
996 self.assertEqual(2, len(DoGet(_LOCAL, '/instances'))) | |
997 | |
998 DropOrthanc(_LOCAL) | |
999 | |
1000 # Send using patient's UUID | |
1001 self.assertEqual(0, len(DoGet(_LOCAL, '/instances'))) | |
1002 j = DoPost(_REMOTE, '/modalities/orthanctest/store', | |
1003 [ 'ca29faea-b6a0e17f-067743a1-8b778011-a48b2a17' ], 'application/json') | |
1004 self.assertEqual(2, len(DoGet(_LOCAL, '/instances'))) | |
1005 | |
1006 | |
1007 def test_color(self): | |
1008 i = UploadInstance(_REMOTE, 'ColorTestMalaterre.dcm')['ID'] | |
1009 im = GetImage(_REMOTE, '/instances/%s/preview' % i) | |
1010 self.assertEqual("RGB", im.mode) | |
1011 self.assertEqual(41, im.size[0]) | |
1012 self.assertEqual(41, im.size[1]) | |
1013 | |
1014 # http://effbot.org/zone/pil-comparing-images.htm | |
13 | 1015 truth = Image.open(GetDatabasePath('ColorTestMalaterre.png')) |
11 | 1016 self.assertTrue(ImageChops.difference(im, truth).getbbox() is None) |
1017 | |
1018 | |
12 | 1019 def test_faking_ruby_put(self): |
1020 UploadInstance(_REMOTE, 'Knee/T1/IM-0001-0001.dcm') | |
1021 UploadInstance(_REMOTE, 'Brainix/Flair/IM-0001-0001.dcm') | |
1022 self.assertEqual(2, len(DoGet(_REMOTE, '/patients'))) | |
1023 a = DoGet(_REMOTE, '/patients')[0] | |
1024 b = DoGet(_REMOTE, '/patients')[1] | |
1025 self.assertEqual(0, DoGet(_REMOTE, '/patients/%s/protected' % a)) | |
1026 DoGet(_REMOTE, '/patients/%s/protected' % a, data = { '_method' : 'PUT' }, body = '0') | |
1027 self.assertEqual(0, DoGet(_REMOTE, '/patients/%s/protected' % a)) | |
1028 DoGet(_REMOTE, '/patients/%s/protected' % a, data = { '_method' : 'PUT' }, body = '1') | |
1029 self.assertEqual(1, DoGet(_REMOTE, '/patients/%s/protected' % a)) | |
1030 DoGet(_REMOTE, '/patients/%s/protected' % a, data = { '_method' : 'PUT' }, body = '0') | |
1031 self.assertEqual(0, DoGet(_REMOTE, '/patients/%s/protected' % a)) | |
1032 | |
1033 | |
1034 def test_faking_ruby_delete(self): | |
1035 UploadInstance(_REMOTE, 'Knee/T1/IM-0001-0001.dcm') | |
1036 UploadInstance(_REMOTE, 'Brainix/Flair/IM-0001-0001.dcm') | |
1037 self.assertEqual(2, len(DoGet(_REMOTE, '/patients'))) | |
1038 a = DoGet(_REMOTE, '/patients')[0] | |
1039 b = DoGet(_REMOTE, '/patients')[1] | |
1040 DoGet(_REMOTE, '/patients/%s' % a, data = { '_method' : 'DELETE' }) | |
1041 self.assertEqual(1, len(DoGet(_REMOTE, '/patients'))) | |
1042 DoGet(_REMOTE, '/patients/%s' % b, data = { '_method' : 'DELETE' }) | |
1043 self.assertEqual(0, len(DoGet(_REMOTE, '/patients'))) | |
1044 | |
1045 | |
1046 def test_faking_google_put(self): | |
1047 UploadInstance(_REMOTE, 'Knee/T1/IM-0001-0001.dcm') | |
1048 UploadInstance(_REMOTE, 'Brainix/Flair/IM-0001-0001.dcm') | |
1049 self.assertEqual(2, len(DoGet(_REMOTE, '/patients'))) | |
1050 a = DoGet(_REMOTE, '/patients')[0] | |
1051 b = DoGet(_REMOTE, '/patients')[1] | |
1052 self.assertEqual(0, DoGet(_REMOTE, '/patients/%s/protected' % a)) | |
1053 DoPost(_REMOTE, '/patients/%s/protected' % a, headers = { 'X-HTTP-Method-Override' : 'PUT' }, data = '0') | |
1054 self.assertEqual(0, DoGet(_REMOTE, '/patients/%s/protected' % a)) | |
1055 DoPost(_REMOTE, '/patients/%s/protected' % a, headers = { 'X-HTTP-Method-Override' : 'PUT' }, data = '1') | |
1056 self.assertEqual(1, DoGet(_REMOTE, '/patients/%s/protected' % a)) | |
1057 DoPost(_REMOTE, '/patients/%s/protected' % a, headers = { 'X-HTTP-Method-Override' : 'PUT' }, data = '0') | |
1058 self.assertEqual(0, DoGet(_REMOTE, '/patients/%s/protected' % a)) | |
1059 | |
1060 | |
1061 def test_faking_google_delete(self): | |
1062 UploadInstance(_REMOTE, 'Knee/T1/IM-0001-0001.dcm') | |
1063 UploadInstance(_REMOTE, 'Brainix/Flair/IM-0001-0001.dcm') | |
1064 self.assertEqual(2, len(DoGet(_REMOTE, '/patients'))) | |
1065 a = DoGet(_REMOTE, '/patients')[0] | |
1066 b = DoGet(_REMOTE, '/patients')[1] | |
1067 DoPost(_REMOTE, '/patients/%s' % a, headers = { 'X-HTTP-Method-Override' : 'DELETE' }) | |
1068 self.assertEqual(1, len(DoGet(_REMOTE, '/patients'))) | |
1069 DoPost(_REMOTE, '/patients/%s' % b, headers = { 'X-HTTP-Method-Override' : 'DELETE' }) | |
1070 self.assertEqual(0, len(DoGet(_REMOTE, '/patients'))) | |
1071 | |
1072 | |
1073 def test_lua(self): | |
1074 self.assertEqual(42, DoPost(_REMOTE, '/tools/execute-script', 'print(42)')) | |
1075 self.assertTrue(IsDefinedInLua(_REMOTE, 'PrintRecursive')) | |
1076 self.assertFalse(IsDefinedInLua(_REMOTE, 'HelloWorld')) | |
1077 | |
1078 | |
1079 def test_metadata(self): | |
1080 UploadInstance(_REMOTE, 'Knee/T1/IM-0001-0001.dcm') | |
1081 p = DoGet(_REMOTE, '/patients')[0] | |
1082 i = DoGet(_REMOTE, '/instances')[0] | |
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1083 series = DoGet(_REMOTE, '/series')[0] |
12 | 1084 |
1085 m = DoGet(_REMOTE, '/patients/%s/metadata' % p) | |
1086 self.assertEqual(1, len(m)) | |
1087 self.assertEqual('LastUpdate', m[0]) | |
1088 | |
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1089 # The lines below failed on Orthanc <= 1.8.2 |
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1090 self.assertRaises(Exception, lambda: DoGet(_REMOTE, '/studies/%s/metadata' % p)) |
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1091 self.assertRaises(Exception, lambda: DoGet(_REMOTE, '/series/%s/metadata' % p)) |
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1092 self.assertRaises(Exception, lambda: DoGet(_REMOTE, '/instances/%s/metadata' % p)) |
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1093 |
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1094 m = DoGet(_REMOTE, '/studies/%s/metadata' % DoGet(_REMOTE, '/studies')[0]) |
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1095 self.assertEqual(1, len(m)) |
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1096 self.assertEqual('LastUpdate', m[0]) |
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1097 |
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1098 m = DoGet(_REMOTE, '/series/%s/metadata' % series) |
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1099 self.assertEqual(2, len(m)) |
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1100 self.assertTrue('LastUpdate' in m) |
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1101 |
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1102 # New in Orthanc 1.9.0 |
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1103 self.assertTrue('RemoteAET' in m) |
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1104 self.assertEqual(DoGet(_REMOTE, '/series/%s/metadata/RemoteAET' % series), '') # None, received by REST API |
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1105 |
12 | 1106 m = DoGet(_REMOTE, '/instances/%s/metadata' % i) |
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1107 if IsOrthancVersionAbove(_REMOTE, 1, 9, 1): |
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1108 self.assertEqual(9, len(m)) |
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1109 self.assertTrue('PixelDataOffset' in m) # New in Orthanc 1.9.1 |
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1110 self.assertEqual(int(DoGet(_REMOTE, '/instances/%s/metadata/PixelDataOffset' % i)), 0x0c78) |
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1111 else: |
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1112 self.assertEqual(8, len(m)) |
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1113 |
12 | 1114 self.assertTrue('IndexInSeries' in m) |
1115 self.assertTrue('ReceptionDate' in m) | |
1116 self.assertTrue('RemoteAET' in m) | |
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1117 self.assertTrue('Origin' in m) |
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1118 self.assertTrue('TransferSyntax' in m) |
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1119 self.assertTrue('SopClassUid' in m) |
145 | 1120 self.assertTrue('RemoteIP' in m) |
1121 self.assertTrue('HttpUsername' in m) | |
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1122 self.assertEqual(DoGet(_REMOTE, '/instances/%s/metadata/IndexInSeries' % i), 1) |
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1123 self.assertEqual(DoGet(_REMOTE, '/instances/%s/metadata/Origin' % i), 'RestApi') |
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1124 self.assertEqual(DoGet(_REMOTE, '/instances/%s/metadata/RemoteAET' % i), '') # None, received by REST API |
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1125 self.assertEqual(DoGet(_REMOTE, '/instances/%s/metadata/TransferSyntax' % i), '1.2.840.10008.1.2.4.91') # JPEG2k |
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1126 self.assertEqual(DoGet(_REMOTE, '/instances/%s/metadata/SopClassUid' % i), '1.2.840.10008.5.1.4.1.1.4') |
12 | 1127 |
1128 # Play with custom metadata | |
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1129 (headers, body) = DoPutRaw(_REMOTE, '/patients/%s/metadata/5555' % p, 'coucou') |
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1130 self.assertEqual('200', headers['status']) |
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1131 self.assertEqual('', body) |
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1132 self.assertEqual('"0"', headers['etag']) |
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1133 |
12 | 1134 m = DoGet(_REMOTE, '/patients/%s/metadata' % p) |
1135 self.assertEqual(2, len(m)) | |
1136 self.assertTrue('LastUpdate' in m) | |
1137 self.assertTrue('5555' in m) | |
1138 self.assertEqual('coucou', DoGet(_REMOTE, '/patients/%s/metadata/5555' % p)) | |
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1139 DoPut(_REMOTE, '/patients/%s/metadata/5555' % p, 'hello', headers = { |
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1140 'If-Match' : headers['etag'] |
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1141 }) |
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1142 |
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1143 (headers, body) = DoGetRaw(_REMOTE, '/patients/%s/metadata/5555' % p) |
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1144 self.assertEqual('200', headers['status']) |
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1145 self.assertEqual('hello', body) |
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1146 DoDelete(_REMOTE, '/patients/%s/metadata/5555' % p, headers = { |
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1147 'If-Match' : headers['etag'] |
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1148 }) |
12 | 1149 m = DoGet(_REMOTE, '/patients/%s/metadata' % p) |
1150 self.assertEqual(1, len(m)) | |
1151 self.assertTrue('LastUpdate' in m) | |
13 | 1152 |
1153 | |
1154 def test_statistics(self): | |
1155 # Upload 16 instances | |
1156 for i in range(4): | |
1157 UploadInstance(_REMOTE, 'Brainix/Flair/IM-0001-000%d.dcm' % (i + 1)) | |
1158 UploadInstance(_REMOTE, 'Brainix/Epi/IM-0001-000%d.dcm' % (i + 1)) | |
1159 UploadInstance(_REMOTE, 'Knee/T1/IM-0001-000%d.dcm' % (i + 1)) | |
1160 UploadInstance(_REMOTE, 'Knee/T2/IM-0001-000%d.dcm' % (i + 1)) | |
1161 | |
1162 s = DoGet(_REMOTE, '/statistics') | |
1163 self.assertEqual(16, s['CountInstances']) | |
1164 self.assertEqual(2, s['CountPatients']) | |
1165 self.assertEqual(2, s['CountStudies']) | |
1166 self.assertEqual(4, s['CountSeries']) | |
1167 d = int(s['TotalUncompressedSize']) | |
1168 | |
1169 e = 0 | |
1170 for patient in DoGet(_REMOTE, '/patients'): | |
1171 s = DoGet(_REMOTE, '/patients/%s/statistics' % patient) | |
1172 self.assertEqual(8, s['CountInstances']) | |
1173 self.assertEqual(1, s['CountStudies']) | |
1174 self.assertEqual(2, s['CountSeries']) | |
1175 e += int(s['UncompressedSize']) | |
1176 | |
1177 for study in DoGet(_REMOTE, '/studies'): | |
1178 s = DoGet(_REMOTE, '/studies/%s/statistics' % study) | |
1179 self.assertEqual(8, s['CountInstances']) | |
1180 self.assertEqual(2, s['CountSeries']) | |
1181 e += int(s['UncompressedSize']) | |
1182 | |
1183 for series in DoGet(_REMOTE, '/series'): | |
1184 s = DoGet(_REMOTE, '/series/%s/statistics' % series) | |
1185 self.assertEqual(4, s['CountInstances']) | |
1186 e += int(s['UncompressedSize']) | |
1187 | |
1188 self.assertEqual(3 * d, e) | |
1189 | |
1190 | |
1191 def test_custom_attachment(self): | |
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1192 u = UploadInstance(_REMOTE, 'Brainix/Flair/IM-0001-0001.dcm') ['ID'] |
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1193 |
13 | 1194 patient = DoGet(_REMOTE, '/patients')[0] |
1195 instance = DoGet(_REMOTE, '/instances')[0] | |
1196 size = int(DoGet(_REMOTE, '/patients/%s/statistics' % patient)['DiskSize']) | |
1197 self.assertEqual(size, int(DoGet(_REMOTE, '/statistics')['TotalDiskSize'])) | |
1198 | |
1199 self.assertEqual(0, len(DoGet(_REMOTE, '/patients/%s/attachments' % patient))) | |
1200 self.assertTrue('dicom' in DoGet(_REMOTE, '/instances/%s/attachments' % instance)) | |
380
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1201 |
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1202 if IsOrthancVersionAbove(_REMOTE, 1, 9, 1): |
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1203 if IsDicomUntilPixelDataStored(_REMOTE): |
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1204 self.assertEqual(2, len(DoGet(_REMOTE, '/instances/%s/attachments' % instance))) |
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1205 self.assertTrue('dicom-until-pixel-data' in DoGet(_REMOTE, '/instances/%s/attachments' % instance)) |
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1206 else: |
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1207 self.assertEqual(1, len(DoGet(_REMOTE, '/instances/%s/attachments' % instance))) |
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1208 else: |
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1209 self.assertEqual(2, len(DoGet(_REMOTE, '/instances/%s/attachments' % instance))) |
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1210 self.assertTrue('dicom-as-json' in DoGet(_REMOTE, '/instances/%s/attachments' % instance)) |
13 | 1211 |
1212 self.assertRaises(Exception, lambda: DoPut(_REMOTE, '/patients/%s/attachments/22' % patient, 'hello')) | |
1213 hello = 'hellohellohellohellohellohellohellohellohello' | |
1214 DoPut(_REMOTE, '/patients/%s/attachments/1025' % patient, hello) | |
1215 self.assertEqual(int(DoGet(_REMOTE, '/patients/%s/statistics' % patient)['DiskSize']), | |
1216 int(DoGet(_REMOTE, '/statistics')['TotalDiskSize'])) | |
1217 self.assertEqual(int(DoGet(_REMOTE, '/patients/%s/statistics' % patient)['DiskSize']), | |
1218 size + int(DoGet(_REMOTE, '/patients/%s/attachments/1025/compressed-size' % patient))) | |
1219 | |
1220 DoPut(_REMOTE, '/patients/%s/attachments/1026' % patient, 'world') | |
1221 self.assertEqual(int(DoGet(_REMOTE, '/patients/%s/statistics' % patient)['DiskSize']), | |
1222 int(DoGet(_REMOTE, '/statistics')['TotalDiskSize'])) | |
1223 self.assertEqual(int(DoGet(_REMOTE, '/patients/%s/statistics' % patient)['DiskSize']), | |
1224 size + | |
1225 int(DoGet(_REMOTE, '/patients/%s/attachments/1025/compressed-size' % patient)) + | |
1226 int(DoGet(_REMOTE, '/patients/%s/attachments/1026/compressed-size' % patient))) | |
1227 | |
1228 self.assertEqual(2, len(DoGet(_REMOTE, '/patients/%s/attachments' % patient))) | |
1229 self.assertEqual(hello, DoGet(_REMOTE, '/patients/%s/attachments/1025/data' % patient)) | |
1230 self.assertEqual('world', DoGet(_REMOTE, '/patients/%s/attachments/1026/data' % patient)) | |
1231 DoPost(_REMOTE, '/patients/%s/attachments/1025/verify-md5' % patient) | |
1232 DoPost(_REMOTE, '/patients/%s/attachments/1026/verify-md5' % patient) | |
1233 DoPut(_REMOTE, '/patients/%s/attachments/1026' % patient, 'world2') | |
1234 self.assertEqual('world2', DoGet(_REMOTE, '/patients/%s/attachments/1026/data' % patient)) | |
1235 | |
1236 self.assertRaises(Exception, lambda: DoDelete(_REMOTE, '/instances/%s/attachments/dicom' % instance)) | |
1237 DoDelete(_REMOTE, '/patients/%s/attachments/1025' % patient) | |
1238 self.assertEqual(int(DoGet(_REMOTE, '/patients/%s/statistics' % patient)['DiskSize']), | |
1239 int(DoGet(_REMOTE, '/statistics')['TotalDiskSize'])) | |
1240 self.assertEqual(int(DoGet(_REMOTE, '/patients/%s/statistics' % patient)['DiskSize']), | |
1241 size + int(DoGet(_REMOTE, '/patients/%s/attachments/1026/compressed-size' % patient))) | |
1242 | |
1243 self.assertEqual(1, len(DoGet(_REMOTE, '/patients/%s/attachments' % patient))) | |
1244 DoDelete(_REMOTE, '/patients/%s/attachments/1026' % patient) | |
1245 self.assertEqual(0, len(DoGet(_REMOTE, '/patients/%s/attachments' % patient))) | |
1246 | |
1247 self.assertEqual(int(DoGet(_REMOTE, '/patients/%s/statistics' % patient)['DiskSize']), size) | |
1248 self.assertEqual(size, int(DoGet(_REMOTE, '/statistics')['TotalDiskSize'])) | |
1249 | |
1250 | |
1251 def test_incoming_storescu(self): | |
1252 self.assertEqual(0, len(DoGet(_REMOTE, '/patients'))) | |
45 | 1253 subprocess.check_call([ FindExecutable('storescu'), |
44
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1254 _REMOTE['Server'], str(_REMOTE['DicomPort']), |
13 | 1255 GetDatabasePath('ColorTestImageJ.dcm') ]) |
1256 self.assertEqual(1, len(DoGet(_REMOTE, '/patients'))) | |
1257 | |
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1258 i = DoGet(_REMOTE, '/instances') |
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1259 self.assertEqual(1, len(i)) |
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1260 m = DoGet(_REMOTE, '/instances/%s/metadata' % i[0]) |
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1261 |
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1262 if IsOrthancVersionAbove(_REMOTE, 1, 9, 1): |
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1263 self.assertEqual(9, len(m)) |
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1264 self.assertTrue('PixelDataOffset' in m) # New in Orthanc 1.9.1 |
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1265 else: |
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1266 self.assertEqual(8, len(m)) |
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1267 |
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1268 self.assertTrue('IndexInSeries' in m) |
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1269 self.assertTrue('ReceptionDate' in m) |
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1270 self.assertTrue('RemoteAET' in m) |
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1271 self.assertTrue('Origin' in m) |
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1272 self.assertTrue('TransferSyntax' in m) |
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1273 self.assertTrue('SopClassUid' in m) |
145 | 1274 self.assertTrue('RemoteIP' in m) |
1275 self.assertTrue('CalledAET' in m) | |
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1276 self.assertEqual(DoGet(_REMOTE, '/instances/%s/metadata/IndexInSeries' % i[0]), 1) |
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1277 self.assertEqual(DoGet(_REMOTE, '/instances/%s/metadata/Origin' % i[0]), 'DicomProtocol') |
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1278 self.assertEqual(DoGet(_REMOTE, '/instances/%s/metadata/RemoteAET' % i[0]), 'STORESCU') |
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1279 self.assertEqual(DoGet(_REMOTE, '/instances/%s/metadata/TransferSyntax' % i[0]), '1.2.840.10008.1.2.1') |
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1280 self.assertEqual(DoGet(_REMOTE, '/instances/%s/metadata/SopClassUid' % i[0]), '1.2.840.10008.5.1.4.1.1.7') |
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1281 |
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1282 series = DoGet(_REMOTE, '/series')[0] |
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1283 m = DoGet(_REMOTE, '/series/%s/metadata' % series) |
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1284 self.assertEqual(2, len(m)) |
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1285 self.assertTrue('LastUpdate' in m) |
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1286 self.assertTrue('RemoteAET' in m) |
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1287 self.assertEqual(DoGet(_REMOTE, '/series/%s/metadata/RemoteAET' % series), 'STORESCU') |
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1288 self.assertEqual(DoGet(_REMOTE, '/series/%s/metadata/LastUpdate' % series), |
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1289 DoGet(_REMOTE, '/instances/%s/metadata/ReceptionDate' % i[0])) |
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1290 |
13 | 1291 |
1292 def test_incoming_findscu(self): | |
1293 UploadInstance(_REMOTE, 'Multiframe.dcm') | |
1294 UploadInstance(_REMOTE, 'ColorTestImageJ.dcm') | |
1295 | |
1296 i = CallFindScu([ '-k', '0008,0052=PATIENT', '-k', '0010,0010' ]) | |
1297 patientNames = re.findall('\(0010,0010\).*?\[(.*?)\]', i) | |
1298 self.assertEqual(2, len(patientNames)) | |
1299 self.assertTrue('Test Patient BG ' in patientNames) | |
1300 self.assertTrue('Anonymized' in patientNames) | |
1301 | |
1302 i = CallFindScu([ '-k', '0008,0052=SERIES', '-k', '0008,0021' ]) | |
1303 series = re.findall('\(0008,0021\).*?\[\s*(.*?)\s*\]', i) | |
1304 self.assertEqual(2, len(series)) | |
1305 self.assertTrue('20070208' in series) | |
1306 self.assertTrue('19980312' in series) | |
1307 | |
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1308 i = CallFindScu([ '-k', '0008,0052=SERIES', '-k', '0008,0021', '-k', 'Modality=MR\\XA' ]) |
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1309 series = re.findall('\(0008,0021\).*?\[\s*(.*?)\s*\]', i) |
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1310 self.assertEqual(1, len(series)) |
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1311 self.assertTrue('19980312' in series) |
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1312 |
13 | 1313 i = CallFindScu([ '-k', '0008,0052=SERIES', '-k', 'PatientName=Anonymized' ]) |
1314 series = re.findall('\(0010,0010\).*?\[\s*(.*?)\s*\]', i) | |
1315 self.assertEqual(1, len(series)) | |
1316 | |
1317 # Test the "CaseSentitivePN" flag (false by default) | |
1318 i = CallFindScu([ '-k', '0008,0052=SERIES', '-k', 'PatientName=anonymized' ]) | |
1319 series = re.findall('\(0010,0010\).*?\[\s*(.*?)\s*\]', i) | |
1320 self.assertEqual(1, len(series)) | |
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1321 |
70 | 1322 # Test range search (buggy if Orthanc <= 0.9.6) |
1323 i = CallFindScu([ '-k', '0008,0052=STUDY', '-k', 'StudyDate=19980312-' ]) | |
1324 studies = re.findall('\(0008,0020\).*?\[\s*(.*?)\s*\]', i) | |
1325 self.assertEqual(2, len(studies)) | |
1326 self.assertTrue('20070208' in studies) | |
1327 self.assertTrue('19980312' in studies) | |
1328 i = CallFindScu([ '-k', '0008,0052=STUDY', '-k', 'StudyDate=19980312-19980312' ]) | |
1329 studies = re.findall('\(0008,0020\).*?\[\s*(.*?)\s*\]', i) | |
1330 self.assertEqual(1, len(studies)) | |
1331 self.assertTrue('19980312' in studies) | |
1332 i = CallFindScu([ '-k', '0008,0052=STUDY', '-k', 'StudyDate=-19980312' ]) | |
1333 studies = re.findall('\(0008,0020\).*?\[\s*(.*?)\s*\]', i) | |
1334 self.assertEqual(1, len(studies)) | |
1335 self.assertTrue('19980312' in studies) | |
326
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1336 |
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1337 # Test that "Retrieve AE Title (0008,0054)" is present, which |
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1338 # was *not* the case in Orthanc <= 1.7.2 |
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1339 i = CallFindScu([ '-k', '0008,0052=INSTANCE' ]) |
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1340 instances = re.findall('\(0008,0054\).*?\[\s*(.*?)\s*\]', i) |
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1341 self.assertEqual(2, len(instances)) |
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1342 self.assertEqual('ORTHANC', instances[0].strip()) |
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1343 self.assertEqual('ORTHANC', instances[1].strip()) |
13 | 1344 |
1345 | |
191
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1346 def test_incoming_findscu_2(self): |
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1347 # This test fails if "LookupMode_DatabaseOnly" is used |
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1348 # (sequences are not available in this mode, and only main |
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1349 # DICOM tags are returned) |
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1350 UploadInstance(_REMOTE, 'Multiframe.dcm') |
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1351 UploadInstance(_REMOTE, 'ColorTestImageJ.dcm') |
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1352 |
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1353 # Test returning sequence values (only since Orthanc 0.9.5) |
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1354 i = CallFindScu([ '-k', '0008,0052=SERIES', '-k', '0008,2112' ]) # "ColorTestImageJ" has this sequence tag |
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1355 sequences = re.findall('\(0008,2112\)', i) |
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1356 self.assertEqual(1, len(sequences)) |
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1357 |
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1358 # Test returning a non-main DICOM tag, |
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1359 # "SecondaryCaptureDeviceID" (0018,1010), whose value is |
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1360 # "MEDPC" in "ColorTestImageJ.dcm" |
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1361 i = CallFindScu([ '-k', '0008,0052=SERIES', '-k', '0018,1010' ]) |
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1362 tags = re.findall('\(0018,1010\).*MEDPC', i) |
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1363 self.assertEqual(1, len(tags)) |
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1364 |
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1365 |
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1366 def test_incoming_findscu_3(self): |
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1367 # This test fails if "LookupMode_DatabaseOnly" or |
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1368 # "LookupMode_DiskOnAnswer" is used, as |
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1369 # "SecondaryCaptureDeviceID" (0018,1010) is not a main DICOM |
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1370 # tag, as thus a constraint cannot be applied to it |
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1371 UploadInstance(_REMOTE, 'ColorTestImageJ.dcm') |
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1372 |
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1373 i = CallFindScu([ '-k', '0008,0052=SERIES', '-k', '0018,1010=MEDPC' ]) |
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1374 sequences = re.findall('\(0018,1010\)', i) |
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1375 self.assertEqual(1, len(sequences)) |
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1376 |
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1377 |
13 | 1378 def test_incoming_movescu(self): |
1379 UploadInstance(_REMOTE, 'Multiframe.dcm') | |
137
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1380 |
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1381 # No matching patient, so no job is created |
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1382 self.assertEqual(0, len(DoGet(_LOCAL, '/patients'))) |
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1383 CallMoveScu([ '--patient', '-k', '0008,0052=PATIENT', '-k', 'PatientID=none' ]) |
13 | 1384 self.assertEqual(0, len(DoGet(_LOCAL, '/patients'))) |
137
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1385 |
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1386 # 1 Matching patient, track the job |
138 | 1387 self.assertTrue(MonitorJob(_REMOTE, lambda: CallMoveScu([ |
1388 '--patient', | |
1389 '-k', '0008,0052=PATIENT', | |
1390 '-k', 'PatientID=12345678' | |
1391 ]))) | |
13 | 1392 self.assertEqual(1, len(DoGet(_LOCAL, '/patients'))) |
1393 | |
1394 | |
1395 def test_findscu(self): | |
1396 i = UploadInstance(_REMOTE, 'DummyCT.dcm')['ID'] | |
1397 j = UploadInstance(_REMOTE, 'Issue22.dcm')['ID'] | |
1398 k = UploadInstance(_REMOTE, 'ColorTestImageJ.dcm')['ID'] | |
1399 DoPost(_REMOTE, '/modalities/orthanctest/store', str(i), 'text/plain') | |
1400 | |
1401 # Test the "find-patient" level | |
1402 p = DoPost(_REMOTE, '/modalities/orthanctest/find-patient', { }) | |
1403 self.assertEqual(1, len(p)) | |
1404 self.assertEqual('ozp00SjY2xG', p[0]['PatientID']) | |
1405 | |
1406 # Test wildcards constraints. The "LO" value representation | |
1407 # for PatientID is always case-sensitive, but the "PN" for | |
1408 # PatientName might depend on the implementation: | |
1409 # "GenerateConfigurationForTests.py" will force it to be case | |
1410 # insensitive (which was the default until Orthanc 0.8.6). | |
1411 p = DoPost(_REMOTE, '/modalities/orthanctest/find-patient', { 'PatientName' : 'K*' }) | |
1412 self.assertEqual(1, len(p)) | |
1413 | |
1414 p = DoPost(_REMOTE, '/modalities/orthanctest/find-patient', { 'PatientName' : 'k*' }) | |
1415 self.assertEqual(1, len(p)) | |
1416 | |
1417 p = DoPost(_REMOTE, '/modalities/orthanctest/find-patient', { 'PatientID' : 'ozp*' }) | |
1418 self.assertEqual(1, len(p)) | |
1419 | |
1420 p = DoPost(_REMOTE, '/modalities/orthanctest/find-patient', { 'PatientID' : 'o?p*' }) | |
1421 self.assertEqual(1, len(p)) | |
1422 | |
1423 p = DoPost(_REMOTE, '/modalities/orthanctest/find-patient', { 'PatientID' : '0?q*' }) | |
1424 self.assertEqual(0, len(p)) | |
1425 | |
1426 p = DoPost(_REMOTE, '/modalities/orthanctest/find-patient', { 'PatientName' : 'B*' }) | |
1427 self.assertEqual(0, len(p)) | |
1428 | |
1429 p = DoPost(_REMOTE, '/modalities/orthanctest/find-patient', { 'PatientName' : 'b*' }) | |
1430 self.assertEqual(0, len(p)) | |
1431 | |
1432 DoPost(_REMOTE, '/modalities/orthanctest/store', str(j), 'text/plain') | |
1433 DoPost(_REMOTE, '/modalities/orthanctest/store', str(k), 'text/plain') | |
1434 DoPost(_REMOTE, '/modalities/orthanctest/find-patient', { }) | |
1435 self.assertEqual(3, len(DoPost(_REMOTE, '/modalities/orthanctest/find-patient', { }))) | |
1436 | |
1437 p = DoPost(_REMOTE, '/modalities/orthanctest/find-patient', { 'PatientName' : 'A*' }) | |
1438 self.assertEqual(2, len(p)) | |
1439 | |
1440 # Test the "find-study" level. This is the instance "ColorTestImageJ.dcm" | |
1441 s = DoPost(_REMOTE, '/modalities/orthanctest/find-study', { 'PatientID' : 'B9uTHKOZ' }) | |
1442 self.assertEqual(1, len(s)) | |
1443 self.assertEqual('20070208', s[0]['StudyDate']) | |
1444 | |
1445 # Test range searches | |
1446 t = DoPost(_REMOTE, '/modalities/orthanctest/find-study', { 'PatientID' : 'B9uTHKOZ', | |
1447 'StudyDate' : '-20070101' }) | |
1448 self.assertEqual(0, len(t)) | |
1449 | |
1450 t = DoPost(_REMOTE, '/modalities/orthanctest/find-study', { 'PatientID' : 'B9uTHKOZ', | |
1451 'StudyDate' : '20090101-' }) | |
1452 self.assertEqual(0, len(t)) | |
1453 | |
1454 t = DoPost(_REMOTE, '/modalities/orthanctest/find-study', { 'PatientID' : 'B9uTHKOZ', | |
1455 'StudyDate' : '20070101-' }) | |
1456 self.assertEqual(1, len(t)) | |
1457 | |
1458 t = DoPost(_REMOTE, '/modalities/orthanctest/find-study', { 'PatientID' : 'B9uTHKOZ', | |
1459 'StudyDate' : '-20090101' }) | |
1460 self.assertEqual(1, len(t)) | |
1461 | |
1462 t = DoPost(_REMOTE, '/modalities/orthanctest/find-study', { 'PatientID' : 'B9uTHKOZ', | |
1463 'StudyDate' : '20070207-20070207' }) | |
1464 self.assertEqual(0, len(t)) | |
1465 | |
1466 t = DoPost(_REMOTE, '/modalities/orthanctest/find-study', { 'PatientID' : 'B9uTHKOZ', | |
1467 'StudyDate' : '20070208-20070208' }) | |
1468 self.assertEqual(1, len(t)) | |
1469 | |
1470 t = DoPost(_REMOTE, '/modalities/orthanctest/find-study', { 'PatientID' : 'B9uTHKOZ', | |
1471 'StudyDate' : '20070209-20070209' }) | |
1472 self.assertEqual(0, len(t)) | |
1473 | |
1474 # Test the ModalitiesInStudy tag | |
1475 t = DoPost(_REMOTE, '/modalities/orthanctest/find-study', { | |
1476 'PatientID' : 'B9uTHKOZ', | |
1477 'ModalitiesInStudy' : 'US' }) | |
1478 self.assertEqual(0, len(t)) | |
1479 | |
1480 t = DoPost(_REMOTE, '/modalities/orthanctest/find-study', { | |
1481 'PatientID' : 'B9uTHKOZ', | |
1482 'ModalitiesInStudy' : 'CT' }) | |
1483 self.assertEqual(1, len(t)) | |
1484 | |
1485 t = DoPost(_REMOTE, '/modalities/orthanctest/find-study', { | |
1486 'PatientID' : 'B9uTHKOZ', | |
1487 'ModalitiesInStudy' : 'US\\CT' }) | |
1488 self.assertEqual(1, len(t)) | |
1489 | |
1490 # Test the "find-series" level | |
1491 t = DoPost(_REMOTE, '/modalities/orthanctest/find-series', { | |
1492 'PatientID' : 'B9uTHKOZ', | |
1493 'StudyInstanceUID' : s[0]['StudyInstanceUID'] }) | |
1494 self.assertEqual(1, len(t)) | |
1495 | |
1496 # Test "\" separator | |
1497 t = DoPost(_REMOTE, '/modalities/orthanctest/find-series', { | |
1498 'PatientID' : 'B9uTHKOZ', | |
1499 'StudyInstanceUID' : s[0]['StudyInstanceUID'], | |
1500 'Modality' : 'MR\\CT\\US' }) | |
1501 self.assertEqual(1, len(t)) | |
1502 | |
1503 t = DoPost(_REMOTE, '/modalities/orthanctest/find-series', { | |
1504 'PatientID' : 'B9uTHKOZ', | |
1505 'StudyInstanceUID' : s[0]['StudyInstanceUID'], | |
1506 'Modality' : 'MR\\US' }) | |
1507 self.assertEqual(0, len(t)) | |
1508 | |
1509 | |
1510 def test_update_modalities(self): | |
1511 try: | |
1512 DoDelete(_REMOTE, '/modalities/toto') | |
1513 except: | |
1514 pass | |
1515 try: | |
1516 DoDelete(_REMOTE, '/modalities/tata') | |
1517 except: | |
1518 pass | |
1519 self.assertRaises(Exception, lambda: DoGet(_REMOTE, '/modalities/toto')) | |
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1520 self.assertRaises(Exception, lambda: DoDelete(_REMOTE, '/modalities/toto')) |
13 | 1521 DoPut(_REMOTE, '/modalities/toto', [ "STORESCP", "localhost", 2000 ]) |
116 | 1522 DoPut(_REMOTE, '/modalities/tata', [ "STORESCP", "localhost", 2000, 'MedInria' ]) # check backward compatiblity with obsolete manufacturer |
1523 DoDelete(_REMOTE, '/modalities/tata') | |
124 | 1524 DoPut(_REMOTE, '/modalities/tata', [ "STORESCP", "localhost", 2000, 'GenericNoUniversalWildcard' ]) |
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1525 DoDelete(_REMOTE, '/modalities/tata') |
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1526 DoPut(_REMOTE, '/modalities/tata', [ "STORESCP", "localhost", 2000, 'GenericNoWildcardInDates' ]) |
128 | 1527 modalitiesReadback = DoGet(_REMOTE, '/modalities?expand') |
182
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1528 self.assertEqual('STORESCP', modalitiesReadback['tata']['AET']) |
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1529 self.assertEqual('localhost', modalitiesReadback['tata']['Host']) |
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1530 self.assertEqual(2000, modalitiesReadback['tata']['Port']) |
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1531 self.assertEqual('GenericNoWildcardInDates', modalitiesReadback['tata']['Manufacturer']) |
116 | 1532 self.assertRaises(Exception, lambda: DoPut(_REMOTE, '/modalities/toto', [ "STORESCP", "localhost", 2000, 'InvalidManufacturerName' ])) |
13 | 1533 self.assertTrue('store' in DoGet(_REMOTE, '/modalities/toto')) |
1534 self.assertTrue('store' in DoGet(_REMOTE, '/modalities/tata')) | |
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1535 |
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1536 # New in Orthanc 1.8.1 |
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1537 self.assertTrue('configuration' in DoGet(_REMOTE, '/modalities/tata')) |
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1538 self.assertEqual(modalitiesReadback['tata'], DoGet(_REMOTE, '/modalities/tata/configuration')) |
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1539 |
13 | 1540 DoDelete(_REMOTE, '/modalities/toto') |
1541 DoDelete(_REMOTE, '/modalities/tata') | |
1542 self.assertRaises(Exception, lambda: DoGet(_REMOTE, '/modalities/toto')) | |
1543 self.assertRaises(Exception, lambda: DoGet(_REMOTE, '/modalities/tata')) | |
1544 | |
1545 | |
1546 def test_update_peers(self): | |
1547 # curl -X PUT http://localhost:8042/peers/toto -d '["http://localhost:8042/"]' -v | |
1548 try: | |
1549 DoDelete(_REMOTE, '/peers/toto') | |
1550 except: | |
1551 pass | |
1552 try: | |
1553 DoDelete(_REMOTE, '/peers/tata') | |
1554 except: | |
1555 pass | |
1556 self.assertRaises(Exception, lambda: DoGet(_REMOTE, '/peers/toto')) | |
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1557 self.assertRaises(Exception, lambda: DoDelete(_REMOTE, '/peers/toto')) |
13 | 1558 DoPut(_REMOTE, '/peers/toto', [ 'http://localhost:8042/' ]) |
214 | 1559 DoPut(_REMOTE, '/peers/tata', { 'Url': 'http://localhost:8042/', |
1560 'Username': 'user', | |
1561 'Password' : 'pass', | |
1562 'RemoteSelf' : 'self' }) | |
128 | 1563 self.assertTrue('tata' in DoGet(_REMOTE, '/peers')) |
1564 peersReadback = DoGet(_REMOTE, '/peers?expand') | |
1565 self.assertEqual('http://localhost:8042/', peersReadback['tata']['Url']) | |
1566 self.assertEqual('user', peersReadback['tata']['Username']) | |
214 | 1567 |
1568 if IsOrthancVersionAbove(_REMOTE, 1, 5, 4): | |
1569 self.assertEqual(None, peersReadback['tata']['Password']) # make sure no sensitive data is included | |
1570 self.assertFalse(peersReadback['tata']['Pkcs11']) # make sure no sensitive data is included | |
1571 self.assertEqual('self', peersReadback['tata']['RemoteSelf']) | |
1572 else: | |
1573 self.assertFalse('Password' in peersReadback['tata']) # make sure no sensitive data is included | |
1574 self.assertFalse('Pkcs11' in peersReadback['tata']) # make sure no sensitive data is included | |
1575 self.assertFalse('RemoteSelf' in peersReadback['tata']) | |
1576 | |
128 | 1577 self.assertFalse('CertificateFile' in peersReadback['tata']) # make sure no sensitive data is included |
1578 self.assertFalse('CertificateKeyFile' in peersReadback['tata']) # make sure no sensitive data is included | |
1579 self.assertFalse('CertificateKeyPassword' in peersReadback['tata']) # make sure no sensitive data is included | |
214 | 1580 |
13 | 1581 self.assertRaises(Exception, lambda: DoPut(_REMOTE, '/peers/toto', [ 'http://localhost:8042/', 'a' ])) |
1582 self.assertRaises(Exception, lambda: DoPut(_REMOTE, '/peers/toto', [ 'http://localhost:8042/', 'a', 'b', 'c' ])) | |
1583 self.assertTrue('store' in DoGet(_REMOTE, '/peers/toto')) | |
1584 self.assertTrue('store' in DoGet(_REMOTE, '/peers/tata')) | |
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1585 |
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1586 # New in Orthanc 1.8.1 |
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1587 self.assertTrue('configuration' in DoGet(_REMOTE, '/peers/tata')) |
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1588 self.assertEqual(peersReadback['tata'], DoGet(_REMOTE, '/peers/tata/configuration')) |
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1589 |
13 | 1590 DoDelete(_REMOTE, '/peers/toto') |
1591 DoDelete(_REMOTE, '/peers/tata') | |
1592 self.assertRaises(Exception, lambda: DoGet(_REMOTE, '/peers/toto')) | |
1593 self.assertRaises(Exception, lambda: DoGet(_REMOTE, '/peers/tata')) | |
1594 | |
1595 | |
1596 def test_mesterhazy_modification(self): | |
1597 # When I modify a series ( eg. curl | |
1598 # http://localhost:8042/series/uidhere/modify -X POST -d | |
1599 # '{"Replace":{"SeriesDate":"19990101"}}' ) the modified | |
1600 # series is added to a new Study, instead of the existing | |
1601 # Study. Fixed in Orthanc 0.7.5 | |
1602 | |
1603 u = UploadInstance(_REMOTE, 'DummyCT.dcm') | |
1604 study = 'b9c08539-26f93bde-c81ab0d7-bffaf2cb-a4d0bdd0' | |
1605 series = 'f2635388-f01d497a-15f7c06b-ad7dba06-c4c599fe' | |
1606 | |
1607 modified = DoPost(_REMOTE, '/series/%s/modify' % series, | |
1608 json.dumps({ "Replace" : { "SeriesDate" : "19990101" }})) | |
1609 | |
1610 self.assertEqual(study, DoGet(_REMOTE, '/series/%s' % modified['ID']) ['ParentStudy']) | |
1611 | |
1612 | |
1613 def test_create(self): | |
1614 i = DoPost(_REMOTE, '/tools/create-dicom', | |
1615 json.dumps({ | |
1616 'PatientName' : 'Jodogne', | |
1617 'Modality' : 'CT', | |
58 | 1618 'SOPClassUID' : '1.2.840.10008.5.1.4.1.1.1', |
13 | 1619 'PixelData' : 'data:image/png;base64,iVBORw0KGgoAAAANSUhEUgAAAAUAAAAFCAYAAACNbyblAAAAHElEQVQI12P4//8/w38GIAXDIBKE0DHxgljNBAAO9TXL0Y4OHwAAAABJRU5ErkJggg==' # red dot in RGBA |
1620 })) | |
1621 | |
1622 self.assertEqual('Jodogne', DoGet(_REMOTE, '/instances/%s/content/PatientName' % i['ID']).strip()) | |
1623 self.assertEqual('CT', DoGet(_REMOTE, '/instances/%s/content/Modality' % i['ID']).strip()) | |
1624 | |
1625 png = GetImage(_REMOTE, '/instances/%s/preview' % i['ID']) | |
1626 self.assertEqual((5, 5), png.size) | |
1627 | |
38 | 1628 j = DoGet(_REMOTE, i['Path']) |
1629 self.assertEqual('Instance', j['Type']) | |
1630 self.assertEqual(j['ID'], i['ID']) | |
1631 | |
13 | 1632 |
1633 def test_pilates(self): | |
1634 # "SCU failed error when accessing orthanc with osirix" by | |
1635 # Pilates Agentur (Mar 10, 2014 at 9:33 PM) | |
1636 i = UploadInstance(_REMOTE, 'PilatesArgenturGEUltrasoundOsiriX.dcm')['ID'] | |
1637 self.assertEqual(0, len(DoGet(_LOCAL, '/patients'))) | |
1638 j = DoPost(_REMOTE, '/modalities/orthanctest/store', str(i), 'text/plain') | |
1639 self.assertEqual(1, len(DoGet(_LOCAL, '/patients'))) | |
1640 | |
1641 | |
1642 def test_shared_tags(self): | |
1643 a = UploadInstance(_REMOTE, 'Knee/T1/IM-0001-0001.dcm')['ID'] | |
1644 b = UploadInstance(_REMOTE, 'Knee/T1/IM-0001-0002.dcm')['ID'] | |
1645 p = DoGet(_REMOTE, '/patients')[0] | |
1646 | |
1647 self.assertTrue('0010,0010' in DoGet(_REMOTE, '/patients/%s/shared-tags' % p)) | |
1648 self.assertTrue('PatientName' in DoGet(_REMOTE, '/patients/%s/shared-tags?simplify' % p)) | |
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1649 self.assertTrue('0010,0010' in DoGet(_REMOTE, '/patients/%s/shared-tags?short' % p)) |
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1650 |
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1651 self.assertEqual('KNEE', DoGet(_REMOTE, '/patients/%s/shared-tags' % p)['0010,0010']['Value']) |
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1652 self.assertEqual('KNEE', DoGet(_REMOTE, '/patients/%s/shared-tags?simplify' % p)['PatientName']) |
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1653 self.assertEqual('KNEE', DoGet(_REMOTE, '/patients/%s/shared-tags?short' % p)['0010,0010']) |
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1654 |
13 | 1655 self.assertTrue('0008,1030' in DoGet(_REMOTE, '/patients/%s/shared-tags' % p)) |
1656 self.assertTrue('StudyDescription' in DoGet(_REMOTE, '/patients/%s/shared-tags?simplify' % p)) | |
1657 self.assertTrue('0008,103e' in DoGet(_REMOTE, '/patients/%s/shared-tags' % p)) | |
1658 self.assertTrue('SeriesDescription' in DoGet(_REMOTE, '/patients/%s/shared-tags?simplify' % p)) | |
1659 self.assertFalse('0008,0018' in DoGet(_REMOTE, '/patients/%s/shared-tags' % p)) | |
1660 self.assertFalse('SOPInstanceUID' in DoGet(_REMOTE, '/patients/%s/shared-tags?simplify' % p)) | |
1661 | |
1662 self.assertTrue('0008,0018' in DoGet(_REMOTE, '/instances/%s/tags' % a)) | |
1663 self.assertTrue('SOPInstanceUID' in DoGet(_REMOTE, '/instances/%s/tags?simplify' % a)) | |
1664 | |
1665 | |
1666 def test_modules(self): | |
1667 a = UploadInstance(_REMOTE, 'Knee/T1/IM-0001-0001.dcm')['ID'] | |
1668 p = DoGet(_REMOTE, '/patients')[0] | |
1669 s = DoGet(_REMOTE, '/studies')[0] | |
1670 t = DoGet(_REMOTE, '/series')[0] | |
1671 | |
1672 self.assertTrue('0010,0010' in DoGet(_REMOTE, '/patients/%s/module' % p)) | |
1673 self.assertTrue('PatientName' in DoGet(_REMOTE, '/patients/%s/module?simplify' % p)) | |
1674 self.assertTrue('0010,0010' in DoGet(_REMOTE, '/studies/%s/module-patient' % p)) | |
1675 self.assertTrue('PatientName' in DoGet(_REMOTE, '/studies/%s/module-patient?simplify' % p)) | |
1676 self.assertTrue('0008,1030' in DoGet(_REMOTE, '/studies/%s/module' % s)) | |
1677 self.assertTrue('StudyDescription' in DoGet(_REMOTE, '/studies/%s/module?simplify' % s)) | |
1678 self.assertTrue('0008,103e' in DoGet(_REMOTE, '/series/%s/module' % p)) | |
1679 self.assertTrue('SeriesDescription' in DoGet(_REMOTE, '/series/%s/module?simplify' % p)) | |
1680 self.assertTrue('0008,0018' in DoGet(_REMOTE, '/instances/%s/module' % a)) | |
1681 self.assertTrue('SOPInstanceUID' in DoGet(_REMOTE, '/instances/%s/module?simplify' % a)) | |
1682 | |
1683 | |
1684 def test_auto_directory(self): | |
1685 a = UploadInstance(_REMOTE, 'Knee/T1/IM-0001-0001.dcm')['ID'] | |
1686 self.assertTrue('now' in DoGet(_REMOTE, '/tools')) | |
1687 self.assertTrue('dicom-conformance' in DoGet(_REMOTE, '/tools')) | |
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1688 self.assertTrue('invalidate-tags' in DoGet(_REMOTE, '/tools')) |
13 | 1689 self.assertTrue(len(DoGet(_REMOTE, '/tools/dicom-conformance')) > 1000) |
1690 self.assertTrue('orthanctest' in DoGet(_REMOTE, '/modalities')) | |
1691 self.assertTrue('echo' in DoGet(_REMOTE, '/modalities/orthanctest')) | |
1692 self.assertTrue('find' in DoGet(_REMOTE, '/modalities/orthanctest')) | |
1693 self.assertTrue('find-instance' in DoGet(_REMOTE, '/modalities/orthanctest')) | |
1694 self.assertTrue('find-patient' in DoGet(_REMOTE, '/modalities/orthanctest')) | |
1695 self.assertTrue('find-series' in DoGet(_REMOTE, '/modalities/orthanctest')) | |
1696 self.assertTrue('find-study' in DoGet(_REMOTE, '/modalities/orthanctest')) | |
1697 self.assertTrue('store' in DoGet(_REMOTE, '/modalities/orthanctest')) | |
1698 self.assertTrue('store' in DoGet(_REMOTE, '/peers/peer')) | |
1699 self.assertTrue('matlab' in DoGet(_REMOTE, '/instances/%s/frames/0' % a)) | |
79 | 1700 self.assertTrue('raw' in DoGet(_REMOTE, '/instances/%s/frames/0' % a)) |
13 | 1701 self.assertRaises(Exception, lambda: DoGet(_REMOTE, '/tools/nope')) |
28 | 1702 self.assertRaises(Exception, lambda: DoGet(_REMOTE, '/nope')) |
1703 self.assertRaises(Exception, lambda: DoGet(_REMOTE, '/nope/nope.html')) | |
1704 self.assertEqual(404, DoGetRaw(_REMOTE, '/nope')[0].status) | |
1705 self.assertEqual(404, DoGetRaw(_REMOTE, '/nope/nope.html')[0].status) | |
13 | 1706 |
1707 | |
1708 def test_echo(self): | |
1709 DoPost(_REMOTE, '/modalities/orthanctest/echo') | |
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1710 DoPost(_REMOTE, '/modalities/orthanctest/echo', '{}') |
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1711 |
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1712 # The following was not working in Orthanc 1.7.0 -> 1.8.1 |
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1713 DoPost(_REMOTE, '/modalities/orthanctest/echo', '') |
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1714 self.assertRaises(Exception, lambda: DoGet(_REMOTE, '/modalities/nope/echo')) |
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1715 |
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1716 # New in Orthanc 1.8.1 |
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1717 DoPost(_REMOTE, '/tools/dicom-echo', [ |
355 | 1718 _REMOTE['DicomAet'], _REMOTE['Server'], _REMOTE['DicomPort'] ]) |
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1719 DoPost(_REMOTE, '/tools/dicom-echo', DoGet(_REMOTE, '/modalities/orthanctest/configuration')) |
13 | 1720 |
353 | 1721 # Use the 'CheckFind' new option in Orthanc 1.8.1 |
1722 DoPost(_REMOTE, '/modalities/self/echo', { 'CheckFind' : True }) | |
1723 DoPost(_REMOTE, '/tools/dicom-echo', { | |
1724 'AET' : _REMOTE['DicomAet'], | |
1725 'Host' : _REMOTE['Server'], | |
1726 'Port' : _REMOTE['DicomPort'], | |
1727 'CheckFind' : True | |
1728 }) | |
1729 | |
13 | 1730 |
1731 def test_xml(self): | |
1732 json = DoGet(_REMOTE, '/tools', headers = { 'accept' : 'application/json' }) | |
1733 xml = minidom.parseString(DoGet(_REMOTE, '/tools', headers = { 'accept' : 'application/xml' })) | |
1734 items = xml.getElementsByTagName('root')[0].getElementsByTagName('item') | |
1735 self.assertEqual(len(items), len(json)) | |
1736 | |
1737 self.assertTrue('dicom-conformance' in json) | |
1738 | |
1739 ok = False | |
1740 for i in items: | |
1741 if i.childNodes[0].data == 'dicom-conformance': | |
1742 ok = True | |
1743 self.assertTrue(ok) | |
1744 | |
1745 | |
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1746 def test_googlecode_issue_16(self): |
13 | 1747 i = UploadInstance(_REMOTE, 'Issue16.dcm')['ID'] |
1748 t = DoGet(_REMOTE, '/instances/%s/tags?simplify' % i)['FrameIncrementPointer'] | |
1749 self.assertEqual('0018,1063', t) | |
1750 | |
1751 | |
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1752 def test_googlecode_issue_22(self): |
13 | 1753 s = UploadInstance(_REMOTE, 'Issue22.dcm')['ID'] |
1754 a = [ | |
1755 "f804691f62197040438f4627c6b994f1", # Frame 0 | |
1756 "c69eee9a51eea3e8611e82e578897254", | |
1757 "315666be83e2d0111c77bc0996d84901", | |
1758 "3e27aa959d911172c48a1436443c72b1", | |
1759 "958642c9e7e9d232d3869faff546058c", | |
1760 "5e7ea8e3e4230cae707d143481355c59", | |
1761 "eda37f83558d858a596175aed8b2ad47", | |
1762 "486713bd2895c4ecbe0e97715ac7f80a", | |
1763 "091ef729eb169e67da8a0faa9631f9a8", | |
1764 "5aa2b8c7ffe0a483efaa8e12417686ca", | |
1765 "e2f39e85896fe58876654b94cd0b5013", | |
1766 "6fd2129e4950abbe1be053bc814d5da8", | |
1767 "c3331a8ba7a757f3d423735ab7fa81f9", | |
1768 "746f808582156734dd6b6fdfd3a0b72c", | |
1769 "8075ea2b227a70c60ea6b7b75a6bb190", | |
1770 "806b8b3e300c615099c11a5ec23465aa", | |
1771 "7c836aa298ba6eef96434579af631a11", | |
1772 "a0357dc9f4f72d73a885c33d7c287446", | |
1773 "f25ba3be1cc7d7fad95706adc199ea7d", | |
1774 "8b114c526b8cbed6cad8a3248b7b480c", | |
1775 "44e6670f127e612a2b4aa60a0d207698", | |
1776 "b8945f90fe02facf2ace24ca1ecbe0a5", | |
1777 "95c796c2fa8f59018b15cf2987b1f79b", | |
1778 "ce0a51ab30224205b44920221dc27351", # Frame 23 | |
1779 ] | |
1780 | |
1781 self.assertEqual(24, len(DoGet(_REMOTE, '/instances/%s/frames' % s))) | |
1782 self.assertRaises(Exception, lambda: DoGet(_REMOTE, '/instances/%s/frames/24/preview' % s)) | |
1783 | |
1784 for i in range(len(a)): | |
1785 self.assertEqual(a[i], ComputeMD5(DoGet(_REMOTE, '/instances/%s/frames/%d/preview' % (s, i)))) | |
1786 | |
1787 | |
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1788 def test_googlecode_issue_19(self): |
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1789 # This is an image with "YBR_FULL" photometric interpretation, it is not supported by Orthanc |
13 | 1790 # gdcmconv -i /home/jodogne/DICOM/GdcmDatabase/US_DataSet/HDI5000_US/3EAF5E01 -w -o Issue19.dcm |
1791 | |
1792 a = UploadInstance(_REMOTE, 'Issue19.dcm')['ID'] | |
304 | 1793 if not HasGdcmPlugin(_REMOTE): |
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1794 self.assertRaises(Exception, lambda: DoGet(_REMOTE, '/instances/941ad3c8-05d05b88-560459f9-0eae0e20-6cddd533/preview')) |
13 | 1795 |
1796 | |
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1797 def test_googlecode_issue_37(self): |
13 | 1798 # Same test for issues 35 and 37. Fixed in Orthanc 0.9.1 |
1799 u = UploadInstance(_REMOTE, 'Beaufix/IM-0001-0001.dcm')['ID'] | |
1800 | |
1801 a = DoPost(_REMOTE, '/tools/find', { 'Level' : 'Series', | |
1802 'CaseSensitive' : True, | |
1803 'Query' : { 'StationName' : 'SMR4-MP3' }}) | |
1804 self.assertEqual(1, len(a)) | |
14 | 1805 |
1806 | |
1807 def test_rest_find(self): | |
1808 # Upload 8 instances | |
1809 for i in range(2): | |
1810 UploadInstance(_REMOTE, 'Brainix/Flair/IM-0001-000%d.dcm' % (i + 1)) | |
1811 UploadInstance(_REMOTE, 'Brainix/Epi/IM-0001-000%d.dcm' % (i + 1)) | |
1812 UploadInstance(_REMOTE, 'Knee/T1/IM-0001-000%d.dcm' % (i + 1)) | |
1813 UploadInstance(_REMOTE, 'Knee/T2/IM-0001-000%d.dcm' % (i + 1)) | |
1814 | |
1815 a = DoPost(_REMOTE, '/tools/find', { 'Level' : 'Patient', | |
1816 'CaseSensitive' : False, | |
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1817 'Query' : { 'PatientName' : 'BRAINIX' }}) |
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1818 self.assertEqual(1, len(a)) |
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1819 |
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1820 a = DoPost(_REMOTE, '/tools/find', { 'Level' : 'Patient', |
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1821 'CaseSensitive' : False, |
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1822 'Query' : { 'PatientName' : 'BRAINIX\\KNEE\\NOPE' }}) |
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1823 self.assertEqual(2, len(a)) |
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1824 |
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1825 a = DoPost(_REMOTE, '/tools/find', { 'Level' : 'Patient', |
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1826 'CaseSensitive' : False, |
14 | 1827 'Query' : { 'PatientName' : '*n*' }}) |
1828 self.assertEqual(2, len(a)) | |
1829 | |
1830 a = DoPost(_REMOTE, '/tools/find', { 'Level' : 'Patient', | |
1831 'CaseSensitive' : True, | |
1832 'Query' : { 'PatientName' : '*n*' }}) | |
1833 self.assertEqual(0, len(a)) | |
1834 | |
1835 a = DoPost(_REMOTE, '/tools/find', { 'Expand' : True, | |
1836 'Level' : 'Patient', | |
1837 'CaseSensitive' : False, | |
1838 'Query' : { 'PatientName' : '*ne*' }}) | |
1839 self.assertEqual(1, len(a)) | |
1840 self.assertEqual('20080822', a[0]['MainDicomTags']['PatientBirthDate']) | |
1841 | |
1842 a = DoPost(_REMOTE, '/tools/find', { 'Level' : 'Patient', | |
1843 'CaseSensitive' : True, | |
1844 'Query' : { 'PatientName' : '*ne*' }}) | |
1845 self.assertEqual(0, len(a)) | |
1846 | |
1847 a = DoPost(_REMOTE, '/tools/find', { 'Level' : 'Study', | |
1848 'CaseSensitive' : True, | |
1849 'Query' : { 'PatientName' : '*NE*' }}) | |
1850 self.assertEqual(1, len(a)) | |
1851 | |
1852 a = DoPost(_REMOTE, '/tools/find', { 'Level' : 'Series', | |
1853 'CaseSensitive' : True, | |
1854 'Query' : { 'PatientName' : '*NE*' }}) | |
1855 self.assertEqual(2, len(a)) | |
1856 | |
1857 a = DoPost(_REMOTE, '/tools/find', { 'Level' : 'Instance', | |
1858 'CaseSensitive' : True, | |
1859 'Query' : { 'PatientName' : '*NE*' }}) | |
1860 self.assertEqual(4, len(a)) | |
1861 | |
1862 a = DoPost(_REMOTE, '/tools/find', { 'Level' : 'Patient', 'Query' : { }}) | |
1863 self.assertEqual(2, len(a)) | |
1864 | |
1865 a = DoPost(_REMOTE, '/tools/find', { 'Level' : 'Study', 'Query' : { }}) | |
1866 self.assertEqual(2, len(a)) | |
1867 | |
1868 a = DoPost(_REMOTE, '/tools/find', { 'Level' : 'Series', 'Query' : { }}) | |
1869 self.assertEqual(4, len(a)) | |
1870 | |
1871 a = DoPost(_REMOTE, '/tools/find', { 'Level' : 'Instance', 'Query' : { }}) | |
1872 self.assertEqual(8, len(a)) | |
1873 | |
194
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1874 a = DoPost(_REMOTE, '/tools/find', { 'Level' : 'Study', |
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1875 'Expand' : True, |
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1876 'Query' : { 'StudyDate' : '20061201-20061201' }}) |
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1877 self.assertEqual(1, len(a)) |
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1878 self.assertEqual('BRAINIX', a[0]['PatientMainDicomTags']['PatientName']) |
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1879 |
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1880 a = DoPost(_REMOTE, '/tools/find', { 'Level' : 'Study', |
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1881 'Expand' : True, |
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1882 'Query' : { 'StudyDate' : '20061201-20091201' }}) |
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1883 self.assertEqual(2, len(a)) |
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1884 for i in range(2): |
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1885 self.assertTrue(a[i]['PatientMainDicomTags']['PatientName'] in ['BRAINIX', 'KNEE']) |
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1886 |
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1887 a = DoPost(_REMOTE, '/tools/find', { 'Level' : 'Study', |
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1888 'Query' : { 'StudyDate' : '20061202-20061202' }}) |
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1889 self.assertEqual(0, len(a)) |
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1890 |
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1891 a = DoPost(_REMOTE, '/tools/find', { 'Level' : 'Study', |
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1892 'Expand' : True, |
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1893 'Query' : { 'StudyDate' : '-20061201' }}) |
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1894 self.assertEqual(1, len(a)) |
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1895 self.assertEqual('BRAINIX', a[0]['PatientMainDicomTags']['PatientName']) |
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1896 |
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1897 a = DoPost(_REMOTE, '/tools/find', { 'Level' : 'Study', |
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1898 'Expand' : True, |
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1899 'Query' : { 'StudyDate' : '-20051201' }}) |
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1900 self.assertEqual(0, len(a)) |
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1901 |
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1902 a = DoPost(_REMOTE, '/tools/find', { 'Level' : 'Study', |
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1903 'Expand' : True, |
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1904 'Query' : { 'StudyDate' : '20061201-' }}) |
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1905 self.assertEqual(2, len(a)) |
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1906 for i in range(2): |
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1907 self.assertTrue(a[i]['PatientMainDicomTags']['PatientName'] in ['BRAINIX', 'KNEE']) |
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1908 |
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1909 a = DoPost(_REMOTE, '/tools/find', { 'Level' : 'Study', |
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1910 'Expand' : True, |
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1911 'Query' : { 'StudyDate' : '20061202-' }}) |
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1912 self.assertEqual(1, len(a)) |
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1913 self.assertEqual('KNEE', a[0]['PatientMainDicomTags']['PatientName']) |
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1914 |
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1915 a = DoPost(_REMOTE, '/tools/find', { 'Level' : 'Study', |
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1916 'Expand' : True, |
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1917 'Query' : { 'StudyDate' : '20080819-' }}) |
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1918 self.assertEqual(1, len(a)) |
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1919 self.assertEqual('KNEE', a[0]['PatientMainDicomTags']['PatientName']) |
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1920 |
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1921 a = DoPost(_REMOTE, '/tools/find', { 'Level' : 'Study', |
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1922 'Expand' : True, |
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1923 'Query' : { 'StudyDate' : '20080820-' }}) |
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1924 self.assertEqual(0, len(a)) |
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1925 |
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1926 |
14 | 1927 |
1928 def test_rest_query_retrieve(self): | |
1929 self.assertEqual(0, len(DoGet(_REMOTE, '/patients'))) | |
1930 | |
1931 # Upload 8 instances | |
1932 for i in range(2): | |
1933 UploadInstance(_REMOTE, 'Brainix/Flair/IM-0001-000%d.dcm' % (i + 1)) | |
1934 UploadInstance(_REMOTE, 'Brainix/Epi/IM-0001-000%d.dcm' % (i + 1)) | |
1935 UploadInstance(_REMOTE, 'Knee/T1/IM-0001-000%d.dcm' % (i + 1)) | |
1936 UploadInstance(_REMOTE, 'Knee/T2/IM-0001-000%d.dcm' % (i + 1)) | |
1937 | |
1938 self.assertEqual(2, len(DoGet(_REMOTE, '/patients'))) | |
1939 for p in DoGet(_REMOTE, '/patients'): | |
1940 DoPost(_REMOTE, '/modalities/orthanctest/store', p) | |
1941 DoDelete(_REMOTE, '/patients/%s' % p) | |
1942 | |
1943 for q in DoGet(_REMOTE, '/queries'): | |
1944 DoDelete(_REMOTE, '/queries/%s' % q) | |
1945 | |
1946 self.assertEqual(0, len(DoGet(_REMOTE, '/patients'))) | |
1947 self.assertEqual(0, len(DoGet(_REMOTE, '/queries'))) | |
1948 a = DoPost(_REMOTE, '/modalities/orthanctest/query', { 'Level' : 'Series', | |
27 | 1949 'Query' : { |
1950 'PatientName' : '*NE*', | |
1951 'StudyDate' : '*', | |
1952 }})['ID'] | |
14 | 1953 self.assertEqual(1, len(DoGet(_REMOTE, '/queries'))) |
1954 | |
1955 b = DoGet(_REMOTE, '/queries/%s' % a) | |
1956 self.assertTrue('answers' in b) | |
1957 self.assertTrue('level' in b) | |
1958 self.assertTrue('modality' in b) | |
1959 self.assertTrue('query' in b) | |
1960 self.assertTrue('retrieve' in b) | |
1961 self.assertEqual('Series', DoGet(_REMOTE, '/queries/%s/level' % a)) | |
1962 self.assertEqual('orthanctest', DoGet(_REMOTE, '/queries/%s/modality' % a)) | |
1963 | |
1964 q = DoGet(_REMOTE, '/queries/%s/query?simplify' % a) | |
27 | 1965 self.assertEqual(2, len(q)) |
14 | 1966 self.assertTrue('PatientName' in q) |
27 | 1967 self.assertTrue('StudyDate' in q) |
14 | 1968 self.assertEqual('*NE*', q['PatientName']) |
27 | 1969 self.assertEqual('*', q['StudyDate']) |
14 | 1970 |
1971 self.assertEqual(2, len(DoGet(_REMOTE, '/queries/%s/answers' % a))) | |
1972 | |
1973 s = DoGet(_REMOTE, '/queries/%s/answers/0' % a) | |
1974 self.assertTrue('content' in s) | |
1975 self.assertTrue('retrieve' in s) | |
1976 | |
1977 s = DoGet(_REMOTE, '/queries/%s/answers/0/content?simplify' % a) | |
1978 self.assertEqual('887', s['PatientID']) | |
1979 self.assertEqual('2.16.840.1.113669.632.20.121711.10000160881', s['StudyInstanceUID']) | |
1980 | |
1981 self.assertEqual(0, len(DoGet(_REMOTE, '/patients'))) | |
1982 DoPost(_REMOTE, '/queries/%s/answers/0/retrieve' % a, 'ORTHANC') | |
1983 self.assertEqual(1, len(DoGet(_REMOTE, '/patients'))) | |
1984 self.assertEqual(1, len(DoGet(_REMOTE, '/studies'))) | |
1985 self.assertEqual(1, len(DoGet(_REMOTE, '/series'))) | |
1986 self.assertEqual(2, len(DoGet(_REMOTE, '/instances'))) | |
1987 | |
112 | 1988 DoPost(_REMOTE, '/queries/%s/answers/1/retrieve' % a, 'ORTHANC', 'application/json') # make sure the issue #36 is fixed (query/retrieve Rest API: /retrieve route shall accept application/json content type) |
14 | 1989 self.assertEqual(1, len(DoGet(_REMOTE, '/patients'))) |
1990 self.assertEqual(1, len(DoGet(_REMOTE, '/studies'))) | |
1991 self.assertEqual(2, len(DoGet(_REMOTE, '/series'))) | |
1992 self.assertEqual(4, len(DoGet(_REMOTE, '/instances'))) | |
1993 | |
186
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1994 # New in Orthanc 1.4.3 |
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1995 s = DoGet(_REMOTE, '/queries/%s/answers?expand&simplify' % a) |
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1996 self.assertEqual(2, len(s)) |
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1997 for i in range(2): |
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1998 self.assertEqual('SERIES', s[i]['QueryRetrieveLevel']) |
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1999 self.assertEqual('887', s[i]['PatientID']) |
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2000 self.assertEqual('2.16.840.1.113669.632.20.121711.10000160881', s[i]['StudyInstanceUID']) |
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2001 |
14 | 2002 DoDelete(_REMOTE, '/queries/%s' % a) |
2003 self.assertEqual(0, len(DoGet(_REMOTE, '/queries'))) | |
2004 | |
2005 | |
2006 def test_parent(self): | |
2007 u = UploadInstance(_REMOTE, 'DummyCT.dcm')['ID'] | |
2008 patient = '6816cb19-844d5aee-85245eba-28e841e6-2414fae2' | |
2009 study = 'b9c08539-26f93bde-c81ab0d7-bffaf2cb-a4d0bdd0' | |
2010 series = 'f2635388-f01d497a-15f7c06b-ad7dba06-c4c599fe' | |
2011 instance = '66a662ce-7430e543-bad44d47-0dc5a943-ec7a538d' | |
107
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2012 self.assertEqual(instance, u) |
14 | 2013 |
2014 a = DoGet(_REMOTE, '/studies/%s/patient' % study) | |
2015 self.assertEqual('Patient', a['Type']) | |
2016 self.assertEqual(patient, a['ID']) | |
2017 | |
2018 a = DoGet(_REMOTE, '/series/%s/patient' % series) | |
2019 self.assertEqual('Patient', a['Type']) | |
2020 self.assertEqual(patient, a['ID']) | |
2021 | |
2022 a = DoGet(_REMOTE, '/series/%s/study' % series) | |
2023 self.assertEqual('Study', a['Type']) | |
2024 self.assertEqual(study, a['ID']) | |
2025 | |
2026 a = DoGet(_REMOTE, '/instances/%s/patient' % instance) | |
2027 self.assertEqual('Patient', a['Type']) | |
2028 self.assertEqual(patient, a['ID']) | |
2029 | |
2030 a = DoGet(_REMOTE, '/instances/%s/study' % instance) | |
2031 self.assertEqual('Study', a['Type']) | |
2032 self.assertEqual(study, a['ID']) | |
2033 | |
2034 a = DoGet(_REMOTE, '/instances/%s/series' % instance) | |
2035 self.assertEqual('Series', a['Type']) | |
2036 self.assertEqual(series, a['ID']) | |
2037 | |
2038 | |
2039 def test_shanon(self): | |
2040 def Anonymize(instance, replacements = {}): | |
119 | 2041 return DoPost(_REMOTE, '/instances/%s/anonymize' % instance, { |
2042 'Replace' : replacements, | |
2043 'Force' : True, | |
2044 }, 'application/json') | |
14 | 2045 |
2046 self.assertEqual(0, len(DoGet(_REMOTE, '/instances'))) | |
2047 u = UploadInstance(_REMOTE, 'DummyCT.dcm')['ID'] | |
2048 self.assertEqual(1, len(DoGet(_REMOTE, '/instances'))) | |
2049 | |
2050 tags = [ 'PatientID', 'StudyInstanceUID', 'SeriesInstanceUID', 'SOPInstanceUID', 'DeidentificationMethod' ] | |
2051 ids = [ 'ozp00SjY2xG', | |
2052 '1.2.840.113619.2.176.2025.1499492.7391.1171285944.390', | |
2053 '1.2.840.113619.2.176.2025.1499492.7391.1171285944.394', | |
2054 '1.2.840.113619.2.176.2025.1499492.7040.1171286242.109' ] | |
2055 | |
2056 a = ExtractDicomTags(Anonymize(u), tags) | |
2057 for i in range(4): | |
2058 self.assertNotEqual(ids[i], a[i]) | |
2059 self.assertTrue(a[4].startswith('Orthanc')) | |
2060 | |
2061 a = ExtractDicomTags(Anonymize(u, { 'PatientName' : 'toto' }), tags) | |
2062 for i in range(4): | |
2063 self.assertNotEqual(ids[i], a[i]) | |
2064 self.assertFalse(a[4].startswith('Orthanc')) | |
2065 | |
2066 a = ExtractDicomTags(Anonymize(u, { 'SOPInstanceUID' : 'instance' }), tags) | |
2067 self.assertEqual('instance', a[3]) | |
2068 self.assertFalse(a[4].startswith('Orthanc')) | |
2069 | |
2070 a = ExtractDicomTags(Anonymize(u, { 'SeriesInstanceUID' : 'series' }), tags) | |
2071 self.assertEqual('series', a[2]) | |
2072 self.assertFalse(a[4].startswith('Orthanc')) | |
2073 | |
2074 a = ExtractDicomTags(Anonymize(u, { 'StudyInstanceUID' : 'study' }), tags) | |
2075 self.assertEqual('study', a[1]) | |
2076 self.assertFalse(a[4].startswith('Orthanc')) | |
2077 | |
2078 a = ExtractDicomTags(Anonymize(u, { 'PatientID' : 'patient' }), tags) | |
2079 self.assertEqual('patient', a[0]) | |
2080 self.assertFalse(a[4].startswith('Orthanc')) | |
2081 | |
2082 a = ExtractDicomTags(Anonymize(u, { 'PatientID' : 'patient', | |
2083 'StudyInstanceUID' : 'study', | |
2084 'SeriesInstanceUID' : 'series', | |
2085 'SOPInstanceUID' : 'instance' }), tags) | |
2086 self.assertEqual('patient', a[0]) | |
2087 self.assertFalse(a[4].startswith('Orthanc')) | |
2088 | |
2089 self.assertEqual(1, len(DoGet(_REMOTE, '/instances'))) | |
2090 | |
2091 | |
2092 def test_shanon_2(self): | |
2093 def Modify(instance, replacements = {}): | |
119 | 2094 return DoPost(_REMOTE, '/instances/%s/modify' % instance, { |
2095 'Replace' : replacements, | |
2096 'Force': True, | |
2097 }, 'application/json') | |
14 | 2098 |
2099 self.assertEqual(0, len(DoGet(_REMOTE, '/instances'))) | |
2100 u = UploadInstance(_REMOTE, 'DummyCT.dcm')['ID'] | |
2101 self.assertEqual(1, len(DoGet(_REMOTE, '/instances'))) | |
2102 | |
2103 tags = [ 'PatientID', 'StudyInstanceUID', 'SeriesInstanceUID', 'SOPInstanceUID', 'DeidentificationMethod' ] | |
2104 ids = [ 'ozp00SjY2xG', | |
2105 '1.2.840.113619.2.176.2025.1499492.7391.1171285944.390', | |
2106 '1.2.840.113619.2.176.2025.1499492.7391.1171285944.394', | |
2107 '1.2.840.113619.2.176.2025.1499492.7040.1171286242.109' ] | |
2108 | |
2109 a = ExtractDicomTags(Modify(u), tags) | |
2110 self.assertEqual(ids[0], a[0]) | |
2111 self.assertEqual(ids[1], a[1]) | |
2112 self.assertEqual(ids[2], a[2]) | |
2113 self.assertNotEqual(ids[3], a[3]) | |
2114 self.assertEqual(0, len(a[4])) | |
2115 | |
2116 a = ExtractDicomTags(Modify(u, { 'SOPInstanceUID' : 'instance' }), tags) | |
2117 self.assertEqual(ids[0], a[0]) | |
2118 self.assertEqual(ids[1], a[1]) | |
2119 self.assertEqual(ids[2], a[2]) | |
2120 self.assertEqual('instance', a[3]) | |
2121 | |
2122 a = ExtractDicomTags(Modify(u, { 'SeriesInstanceUID' : 'series' }), tags) | |
2123 self.assertEqual(ids[0], a[0]) | |
2124 self.assertEqual(ids[1], a[1]) | |
2125 self.assertEqual('series', a[2]) | |
2126 self.assertNotEqual(ids[3], a[3]) | |
2127 | |
2128 a = ExtractDicomTags(Modify(u, { 'StudyInstanceUID' : 'study' }), tags) | |
2129 self.assertEqual(ids[0], a[0]) | |
2130 self.assertEqual('study', a[1]) | |
2131 self.assertNotEqual(ids[2], a[2]) | |
2132 self.assertNotEqual(ids[3], a[3]) | |
2133 | |
2134 a = ExtractDicomTags(Modify(u, { 'PatientID' : 'patient' }), tags) | |
2135 self.assertEqual('patient', a[0]) | |
2136 self.assertNotEqual(ids[1], a[1]) | |
2137 self.assertNotEqual(ids[2], a[2]) | |
2138 self.assertNotEqual(ids[3], a[3]) | |
2139 | |
2140 a = ExtractDicomTags(Modify(u, { 'PatientID' : 'patient', | |
2141 'StudyInstanceUID' : 'study', | |
2142 'SeriesInstanceUID' : 'series', | |
2143 'SOPInstanceUID' : 'instance' }), tags) | |
2144 self.assertEqual('patient', a[0]) | |
2145 self.assertEqual('study', a[1]) | |
2146 self.assertEqual('series', a[2]) | |
2147 self.assertEqual('instance', a[3]) | |
2148 | |
2149 self.assertEqual(1, len(DoGet(_REMOTE, '/instances'))) | |
2150 | |
2151 | |
2152 def test_instances_tags(self): | |
2153 a = UploadInstance(_REMOTE, 'Knee/T1/IM-0001-0001.dcm')['ID'] | |
2154 b = UploadInstance(_REMOTE, 'Knee/T2/IM-0001-0001.dcm')['ID'] | |
2155 #a = UploadInstance(_REMOTE, 'Cardiac/MR.X.1.2.276.0.7230010.3.1.4.2831157719.2256.1336386937.676343')['ID'] | |
2156 #b = UploadInstance(_REMOTE, 'Cardiac/MR.X.1.2.276.0.7230010.3.1.4.2831157719.2256.1336386925.676329')['ID'] | |
2157 | |
2158 i = DoGet(_REMOTE, '/patients/%s/instances-tags?simplify' % DoGet(_REMOTE, '/patients')[0]) | |
2159 self.assertEqual(2, len(i)) | |
2160 self.assertEqual('887', i[i.keys()[0]]['PatientID']) | |
2161 self.assertEqual('887', i[i.keys()[1]]['PatientID']) | |
2162 | |
2163 i = DoGet(_REMOTE, '/patients/%s/instances-tags?simplify' % DoGet(_REMOTE, '/studies')[0]) | |
2164 self.assertEqual(2, len(i)) | |
2165 self.assertEqual('887', i[i.keys()[0]]['PatientID']) | |
2166 self.assertEqual('887', i[i.keys()[1]]['PatientID']) | |
2167 | |
2168 self.assertEqual(2, len(DoGet(_REMOTE, '/series'))) | |
2169 i = DoGet(_REMOTE, '/patients/%s/instances-tags?simplify' % DoGet(_REMOTE, '/series')[0]) | |
2170 self.assertEqual(1, len(i)) | |
2171 self.assertEqual('887', i[i.keys()[0]]['PatientID']) | |
2172 | |
2173 i = DoGet(_REMOTE, '/patients/%s/instances-tags?simplify' % DoGet(_REMOTE, '/series')[1]) | |
2174 self.assertEqual(1, len(i)) | |
2175 self.assertEqual('887', i[i.keys()[0]]['PatientID']) | |
2176 | |
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2177 i = DoGet(_REMOTE, '/patients/%s/instances-tags?short' % DoGet(_REMOTE, '/series')[1]) |
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2178 self.assertEqual(1, len(i)) |
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2179 self.assertEqual('887', i[i.keys()[0]]['0010,0020']) |
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2180 |
14 | 2181 |
2182 def test_lookup(self): | |
2183 a = DoPost(_REMOTE, '/tools/lookup', 'ozp00SjY2xG') | |
2184 self.assertEqual(0, len(a)) | |
2185 | |
2186 UploadInstance(_REMOTE, 'DummyCT.dcm') | |
2187 | |
2188 a = DoPost(_REMOTE, '/tools/lookup', 'ozp00SjY2xG') | |
2189 self.assertEqual(1, len(a)) | |
2190 self.assertEqual('Patient', a[0]['Type']) | |
2191 self.assertEqual('6816cb19-844d5aee-85245eba-28e841e6-2414fae2', a[0]['ID']) | |
2192 self.assertEqual('/patients/%s' % a[0]['ID'], a[0]['Path']) | |
2193 | |
2194 a = DoPost(_REMOTE, '/tools/lookup', '1.2.840.113619.2.176.2025.1499492.7391.1171285944.390') | |
2195 self.assertEqual(1, len(a)) | |
2196 self.assertEqual('Study', a[0]['Type']) | |
2197 self.assertEqual('b9c08539-26f93bde-c81ab0d7-bffaf2cb-a4d0bdd0', a[0]['ID']) | |
2198 self.assertEqual('/studies/%s' % a[0]['ID'], a[0]['Path']) | |
2199 | |
2200 a = DoPost(_REMOTE, '/tools/lookup', '1.2.840.113619.2.176.2025.1499492.7391.1171285944.394') | |
2201 self.assertEqual(1, len(a)) | |
2202 self.assertEqual('Series', a[0]['Type']) | |
2203 self.assertEqual('f2635388-f01d497a-15f7c06b-ad7dba06-c4c599fe', a[0]['ID']) | |
2204 self.assertEqual('/series/%s' % a[0]['ID'], a[0]['Path']) | |
2205 | |
2206 a = DoPost(_REMOTE, '/tools/lookup', '1.2.840.113619.2.176.2025.1499492.7040.1171286242.109') | |
2207 self.assertEqual(1, len(a)) | |
2208 self.assertEqual('Instance', a[0]['Type']) | |
2209 self.assertEqual('66a662ce-7430e543-bad44d47-0dc5a943-ec7a538d', a[0]['ID']) | |
2210 self.assertEqual('/instances/%s' % a[0]['ID'], a[0]['Path']) | |
2211 | |
2212 DropOrthanc(_REMOTE) | |
2213 a = DoPost(_REMOTE, '/tools/lookup', '3113719P') | |
2214 self.assertEqual(0, len(a)) | |
2215 | |
15 | 2216 |
2217 def test_autorouting(self): | |
2218 knee1 = 'Knee/T1/IM-0001-0001.dcm' | |
2219 knee2 = 'Knee/T2/IM-0001-0002.dcm' | |
2220 other = 'Brainix/Flair/IM-0001-0001.dcm' | |
2221 | |
2222 # Check that this version is >= 0.8.0 | |
2223 self.assertTrue(IsDefinedInLua(_REMOTE, '_InitializeJob')) | |
2224 self.assertTrue('orthanctest' in DoGet(_REMOTE, '/modalities')) | |
2225 | |
2226 UploadInstance(_REMOTE, knee1) | |
2227 self.assertEqual(0, len(DoGet(_LOCAL, '/instances'))) | |
2228 | |
2229 DropOrthanc(_REMOTE) | |
2230 DropOrthanc(_LOCAL) | |
174 | 2231 InstallLuaScriptFromPath(_REMOTE, 'Lua/Autorouting.lua') |
15 | 2232 UploadInstance(_REMOTE, knee1) |
2233 UploadInstance(_REMOTE, knee2) | |
2234 UploadInstance(_REMOTE, other) | |
2235 WaitEmpty(_REMOTE) | |
174 | 2236 UninstallLuaCallbacks(_REMOTE) |
15 | 2237 self.assertEqual(3, len(DoGet(_LOCAL, '/instances'))) |
2238 | |
2239 DropOrthanc(_REMOTE) | |
2240 DropOrthanc(_LOCAL) | |
174 | 2241 InstallLuaScriptFromPath(_REMOTE, 'Lua/AutoroutingConditional.lua') |
15 | 2242 UploadInstance(_REMOTE, knee1) |
2243 UploadInstance(_REMOTE, knee2) | |
2244 UploadInstance(_REMOTE, other) | |
2245 WaitEmpty(_REMOTE) | |
174 | 2246 UninstallLuaCallbacks(_REMOTE) |
15 | 2247 self.assertEqual(2, len(DoGet(_LOCAL, '/instances'))) |
2248 | |
2249 DropOrthanc(_REMOTE) | |
2250 DropOrthanc(_LOCAL) | |
174 | 2251 InstallLuaScriptFromPath(_REMOTE, 'Lua/AutoroutingModification.lua') |
15 | 2252 UploadInstance(_REMOTE, knee1) |
2253 WaitEmpty(_REMOTE) | |
174 | 2254 UninstallLuaCallbacks(_REMOTE) |
15 | 2255 i = DoGet(_LOCAL, '/instances') |
2256 self.assertEqual(1, len(i)) | |
2257 | |
2258 with tempfile.NamedTemporaryFile(delete = True) as f: | |
2259 f.write(DoGet(_LOCAL, '/instances/%s/file' % i[0])) | |
2260 f.flush() | |
45 | 2261 routed = subprocess.check_output([ FindExecutable('dcm2xml'), f.name ]) |
15 | 2262 self.assertEqual('My Medical Device', re.search('"StationName">(.*?)<', routed).group(1).strip()) |
2263 self.assertEqual(None, re.search('"MilitaryRank"', routed)) | |
2264 self.assertEqual(None, re.search('"0051,0010"', routed)) # A private tag | |
17 | 2265 |
2266 | |
2267 def test_storescu_rf(self): | |
2268 i = UploadInstance(_REMOTE, 'KarstenHilbertRF.dcm')['ID'] | |
2269 self.assertEqual(0, len(DoGet(_LOCAL, '/instances'))) | |
2270 j = DoPost(_REMOTE, '/modalities/orthanctest/store', str(i), 'text/plain') | |
2271 self.assertEqual(1, len(DoGet(_LOCAL, '/instances'))) | |
18 | 2272 |
2273 | |
2274 def test_anonymize_instance(self): | |
2275 def AnonymizeAndUpload(instanceId, parameters): | |
2276 return DoPost(_REMOTE, '/instances', DoPost(_REMOTE, '/instances/%s/anonymize' % instanceId, parameters, | |
2277 'application/json'), 'application/dicom')['ID'] | |
2278 | |
2279 def ModifyAndUpload(instanceId, parameters): | |
2280 return DoPost(_REMOTE, '/instances', DoPost(_REMOTE, '/instances/%s/modify' % instanceId, parameters, | |
2281 'application/json'), 'application/dicom')['ID'] | |
2282 | |
2283 a = UploadInstance(_REMOTE, 'PrivateMDNTags.dcm')['ID'] | |
2284 s1 = DoGet(_REMOTE, '/instances/%s/content/PatientName' % a) | |
2285 s2 = DoGet(_REMOTE, '/instances/%s/content/00e1-10c2' % a) # Some private tag | |
2286 s3 = DoGet(_REMOTE, '/instances/%s/content/StudyDescription' % a) | |
2287 s4 = DoGet(_REMOTE, '/instances/%s/content/SeriesDescription' % a) | |
2288 s5 = DoGet(_REMOTE, '/instances/%s/content/InstitutionName' % a) | |
2289 | |
2290 b = AnonymizeAndUpload(a, '{}') | |
2291 self.assertNotEqual(s1, DoGet(_REMOTE, '/instances/%s/content/PatientName' % b)) | |
2292 self.assertRaises(Exception, lambda: DoGet(_REMOTE, '/instances/%s/content/00e1-10c2' % b)) | |
2293 | |
2294 # Keep private tag (only OK since Orthanc 0.8.0) | |
2295 b = AnonymizeAndUpload(a, '{"Keep":["00e1-10c2"]}') | |
2296 self.assertNotEqual(s1, DoGet(_REMOTE, '/instances/%s/content/PatientName' % b)) | |
2297 self.assertEqual(s2, DoGet(_REMOTE, '/instances/%s/content/00e1-10c2' % b)) | |
2298 | |
2299 b = AnonymizeAndUpload(a, '{"Keep":["00e1,10c2","PatientName"]}') | |
2300 self.assertEqual(s1, DoGet(_REMOTE, '/instances/%s/content/PatientName' % b)) | |
2301 self.assertEqual(s2, DoGet(_REMOTE, '/instances/%s/content/00e1-10c2' % b)) | |
2302 | |
2303 b = AnonymizeAndUpload(a, '{"Keep":["PatientName"],"Replace":{"00e1,10c2":"Hello"}}') | |
2304 self.assertEqual(s1, DoGet(_REMOTE, '/instances/%s/content/PatientName' % b)) | |
2305 self.assertTrue(DoGet(_REMOTE, '/instances/%s/content/00e1-10c2' % b).startswith('Hello')) | |
2306 | |
2307 # Examples from the Wiki | |
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2308 b = AnonymizeAndUpload(a, '{"Replace":{"PatientName":"hello","0010-0020":"world"},"Keep":["StudyDescription", "SeriesDescription"],"KeepPrivateTags": true,"Force":true}') |
18 | 2309 self.assertEqual('hello', DoGet(_REMOTE, '/instances/%s/content/0010-0010' % b).strip()) |
2310 self.assertEqual('world', DoGet(_REMOTE, '/instances/%s/content/PatientID' % b).strip()) | |
2311 self.assertEqual(s3, DoGet(_REMOTE, '/instances/%s/content/0008,1030' % b)) | |
2312 self.assertEqual(s4, DoGet(_REMOTE, '/instances/%s/content/0008,103e' % b)) | |
2313 self.assertEqual(s4, DoGet(_REMOTE, '/instances/%s/content/0008-103E' % b)) | |
2314 self.assertEqual(s2, DoGet(_REMOTE, '/instances/%s/content/00e1-10c2' % b)) | |
2315 DoGet(_REMOTE, '/instances/%s/content/InstitutionName' % a) | |
2316 self.assertRaises(Exception, lambda: DoGet(_REMOTE, '/instances/%s/content/InstitutionName' % b)) | |
2317 | |
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2318 b = ModifyAndUpload(a, '{"Replace":{"PatientName":"hello","PatientID":"world"},"Remove":["InstitutionName"],"RemovePrivateTags": true,"Force":true}') |
18 | 2319 self.assertEqual('hello', DoGet(_REMOTE, '/instances/%s/content/0010-0010' % b).strip()) |
2320 self.assertEqual('world', DoGet(_REMOTE, '/instances/%s/content/PatientID' % b).strip()) | |
2321 self.assertEqual(s3, DoGet(_REMOTE, '/instances/%s/content/0008,1030' % b)) | |
2322 self.assertEqual(s4, DoGet(_REMOTE, '/instances/%s/content/0008,103e' % b)) | |
2323 self.assertRaises(Exception, lambda: DoGet(_REMOTE, '/instances/%s/content/00e1-10c2' % b)) | |
2324 self.assertRaises(Exception, lambda: DoGet(_REMOTE, '/instances/%s/content/InstitutionName' % b)) | |
2325 | |
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2326 b = ModifyAndUpload(a, '{"Replace":{"PatientName":"hello","PatientID":"world"},"Force":true}') |
18 | 2327 self.assertEqual('hello', DoGet(_REMOTE, '/instances/%s/content/0010-0010' % b).strip()) |
2328 self.assertEqual('world', DoGet(_REMOTE, '/instances/%s/content/PatientID' % b).strip()) | |
2329 self.assertEqual(s2, DoGet(_REMOTE, '/instances/%s/content/00e1,10c2' % b)) | |
2330 self.assertEqual(s3, DoGet(_REMOTE, '/instances/%s/content/0008,1030' % b)) | |
2331 self.assertEqual(s4, DoGet(_REMOTE, '/instances/%s/content/0008-103E' % b)) | |
2332 self.assertEqual(s5, DoGet(_REMOTE, '/instances/%s/content/InstitutionName' % b)) | |
2333 | |
2334 | |
2335 # Test modify non-existing | |
2336 i = DoPost(_REMOTE, '/tools/create-dicom', | |
2337 json.dumps({ | |
2338 'PatientName' : 'Jodogne', | |
2339 'Modality' : 'CT', | |
2340 }))['ID'] | |
2341 | |
2342 self.assertEqual('Jodogne', DoGet(_REMOTE, '/instances/%s/content/PatientName' % i).strip()) | |
2343 self.assertRaises(Exception, lambda: DoGet(_REMOTE, '/instances/%s/content/StudyDescription' % i)) | |
2344 self.assertEqual('CT', DoGet(_REMOTE, '/instances/%s/content/Modality' % i).strip()) | |
2345 | |
2346 b = ModifyAndUpload(i, '{"Replace":{"StudyDescription":"hello","Modality":"world"}}') | |
2347 self.assertEqual('Jodogne', DoGet(_REMOTE, '/instances/%s/content/PatientName' % b).strip()) | |
2348 self.assertEqual('hello', DoGet(_REMOTE, '/instances/%s/content/StudyDescription' % b).strip()) | |
2349 self.assertEqual('world', DoGet(_REMOTE, '/instances/%s/content/Modality' % b).strip()) | |
2350 | |
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2351 |
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2352 def test_incoming_jpeg(self): |
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2353 def storescu(image, acceptUnknownSopClassUid): |
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2354 if acceptUnknownSopClassUid: |
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2355 tmp = [ '-xf', GetDatabasePath('UnknownSopClassUid.cfg'), 'Default' ] |
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2356 else: |
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2357 tmp = [ '-xs' ] |
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2358 |
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2359 with open(os.devnull, 'w') as FNULL: |
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2360 subprocess.check_call([ FindExecutable('storescu') ] + tmp + |
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2361 [ _REMOTE['Server'], str(_REMOTE['DicomPort']), |
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2362 GetDatabasePath(image) ], |
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2363 stderr = FNULL) |
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2364 |
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2365 self.assertEqual(0, len(DoGet(_REMOTE, '/patients'))) |
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2366 |
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2367 if IsOrthancVersionAbove(_REMOTE, 1, 9, 0): |
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2368 a = DoPut(_REMOTE, '/tools/accepted-transfer-syntaxes', [ |
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2369 '1.2.840.10008.1.2', '1.2.840.10008.1.2.1', '1.2.840.10008.1.2.2' |
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2370 ]) |
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2371 self.assertTrue('1.2.840.10008.1.2' in a) |
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2372 self.assertTrue('1.2.840.10008.1.2.1' in a) |
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2373 self.assertTrue('1.2.840.10008.1.2.2' in a) |
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2374 self.assertEqual(3, len(a)) |
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2375 self.assertRaises(Exception, lambda: DoPut(_REMOTE, '/tools/unknown-sop-class-accepted', 'nope')) |
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2376 DoPut(_REMOTE, '/tools/unknown-sop-class-accepted', '0') |
f673153f27a4
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diff
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|
2377 self.assertEqual(0, DoGet(_REMOTE, '/tools/unknown-sop-class-accepted')) |
f673153f27a4
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diff
changeset
|
2378 else: |
f673153f27a4
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diff
changeset
|
2379 InstallLuaScriptFromPath(_REMOTE, 'Lua/TransferSyntaxDisable.lua') |
f673153f27a4
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372
diff
changeset
|
2380 |
61
967d44407308
test UnknownSopClassAccepted option
Sebastien Jodogne <s.jodogne@gmail.com>
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60
diff
changeset
|
2381 self.assertRaises(Exception, lambda: storescu('Knix/Loc/IM-0001-0001.dcm', False)) |
967d44407308
test UnknownSopClassAccepted option
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60
diff
changeset
|
2382 self.assertRaises(Exception, lambda: storescu('UnknownSopClassUid.dcm', True)) |
21
2a29bcff60a7
tests of image decoding
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18
diff
changeset
|
2383 self.assertEqual(0, len(DoGet(_REMOTE, '/patients'))) |
373
f673153f27a4
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diff
changeset
|
2384 |
f673153f27a4
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diff
changeset
|
2385 if IsOrthancVersionAbove(_REMOTE, 1, 9, 0): |
374 | 2386 a = DoPut(_REMOTE, '/tools/accepted-transfer-syntaxes', '*', 'text/plain') |
373
f673153f27a4
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diff
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|
2387 self.assertGreaterEqual(42, len(a)) |
f673153f27a4
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diff
changeset
|
2388 DoPut(_REMOTE, '/tools/unknown-sop-class-accepted', 'true') |
f673153f27a4
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372
diff
changeset
|
2389 self.assertEqual(1, DoGet(_REMOTE, '/tools/unknown-sop-class-accepted')) |
f673153f27a4
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diff
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|
2390 else: |
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diff
changeset
|
2391 InstallLuaScriptFromPath(_REMOTE, 'Lua/TransferSyntaxEnable.lua') |
f673153f27a4
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diff
changeset
|
2392 |
62
f9c4ce95756f
removal of useless information
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61
diff
changeset
|
2393 DoPost(_REMOTE, '/tools/execute-script', "print('All special transfer syntaxes are now accepted')") |
61
967d44407308
test UnknownSopClassAccepted option
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60
diff
changeset
|
2394 storescu('Knix/Loc/IM-0001-0001.dcm', False) |
967d44407308
test UnknownSopClassAccepted option
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
60
diff
changeset
|
2395 storescu('UnknownSopClassUid.dcm', True) |
967d44407308
test UnknownSopClassAccepted option
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parents:
60
diff
changeset
|
2396 self.assertEqual(2, len(DoGet(_REMOTE, '/patients'))) |
21
2a29bcff60a7
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18
diff
changeset
|
2397 |
2a29bcff60a7
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Sebastien Jodogne <s.jodogne@gmail.com>
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18
diff
changeset
|
2398 |
2a29bcff60a7
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18
diff
changeset
|
2399 def test_storescu_jpeg(self): |
2a29bcff60a7
tests of image decoding
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18
diff
changeset
|
2400 self.assertEqual(0, len(DoGet(_REMOTE, '/exports')['Exports'])) |
2a29bcff60a7
tests of image decoding
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18
diff
changeset
|
2401 |
2a29bcff60a7
tests of image decoding
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parents:
18
diff
changeset
|
2402 knixStudy = 'b9c08539-26f93bde-c81ab0d7-bffaf2cb-a4d0bdd0' |
64 | 2403 i = UploadInstance(_REMOTE, 'Knix/Loc/IM-0001-0001.dcm')['ID'] |
2404 | |
2405 # This is JPEG lossless | |
136
5634ef96fcc5
testing "short" option
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133
diff
changeset
|
2406 self.assertEqual('1.2.840.10008.1.2.4.70', DoGet(_REMOTE, '/instances/%s/header' % i)['0002,0010']['Value']) |
64 | 2407 self.assertEqual('1.2.840.10008.1.2.4.70', DoGet(_REMOTE, '/instances/%s/header?simplify' % i)['TransferSyntaxUID']) |
136
5634ef96fcc5
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diff
changeset
|
2408 self.assertEqual('1.2.840.10008.1.2.4.70', DoGet(_REMOTE, '/instances/%s/header?short' % i)['0002,0010']) |
64 | 2409 |
21
2a29bcff60a7
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18
diff
changeset
|
2410 UploadInstance(_REMOTE, 'Knix/Loc/IM-0001-0002.dcm') |
2a29bcff60a7
tests of image decoding
Sebastien Jodogne <s.jodogne@gmail.com>
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18
diff
changeset
|
2411 UploadInstance(_REMOTE, 'Knix/Loc/IM-0001-0003.dcm') |
2a29bcff60a7
tests of image decoding
Sebastien Jodogne <s.jodogne@gmail.com>
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18
diff
changeset
|
2412 |
2a29bcff60a7
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18
diff
changeset
|
2413 a = UploadInstance(_REMOTE, 'Brainix/Flair/IM-0001-0001.dcm')['ID'] |
2a29bcff60a7
tests of image decoding
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parents:
18
diff
changeset
|
2414 b = UploadInstance(_REMOTE, 'ColorTestImageJ.dcm')['ID'] |
2a29bcff60a7
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parents:
18
diff
changeset
|
2415 self.assertEqual(0, len(DoGet(_LOCAL, '/instances'))) |
2a29bcff60a7
tests of image decoding
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parents:
18
diff
changeset
|
2416 DoPost(_REMOTE, '/modalities/orthanctest/store', [ knixStudy, a, b ]) |
2a29bcff60a7
tests of image decoding
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18
diff
changeset
|
2417 self.assertEqual(5, len(DoGet(_LOCAL, '/instances'))) |
2a29bcff60a7
tests of image decoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
18
diff
changeset
|
2418 |
2a29bcff60a7
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18
diff
changeset
|
2419 self.assertEqual(3, len(DoGet(_REMOTE, '/exports')['Exports'])) |
2a29bcff60a7
tests of image decoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
18
diff
changeset
|
2420 |
2a29bcff60a7
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Sebastien Jodogne <s.jodogne@gmail.com>
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18
diff
changeset
|
2421 DropOrthanc(_REMOTE) |
2a29bcff60a7
tests of image decoding
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18
diff
changeset
|
2422 self.assertEqual(0, len(DoGet(_REMOTE, '/exports')['Exports'])) |
2a29bcff60a7
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Sebastien Jodogne <s.jodogne@gmail.com>
parents:
18
diff
changeset
|
2423 |
2a29bcff60a7
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Sebastien Jodogne <s.jodogne@gmail.com>
parents:
18
diff
changeset
|
2424 |
2a29bcff60a7
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Sebastien Jodogne <s.jodogne@gmail.com>
parents:
18
diff
changeset
|
2425 def test_pixel_data(self): |
2a29bcff60a7
tests of image decoding
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parents:
18
diff
changeset
|
2426 jpeg = UploadInstance(_REMOTE, 'Knix/Loc/IM-0001-0001.dcm')['ID'] |
2a29bcff60a7
tests of image decoding
Sebastien Jodogne <s.jodogne@gmail.com>
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18
diff
changeset
|
2427 color = UploadInstance(_REMOTE, 'ColorTestImageJ.dcm')['ID'] |
2a29bcff60a7
tests of image decoding
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18
diff
changeset
|
2428 phenix = UploadInstance(_REMOTE, 'Phenix/IM-0001-0001.dcm')['ID'] |
2a29bcff60a7
tests of image decoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
18
diff
changeset
|
2429 |
2a29bcff60a7
tests of image decoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
18
diff
changeset
|
2430 phenixSize = 358 * 512 * 2 |
2a29bcff60a7
tests of image decoding
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parents:
18
diff
changeset
|
2431 colorSize = 1000 * 1000 * 3 |
2a29bcff60a7
tests of image decoding
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18
diff
changeset
|
2432 jpegSize = 51918 |
2a29bcff60a7
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Sebastien Jodogne <s.jodogne@gmail.com>
parents:
18
diff
changeset
|
2433 |
2a29bcff60a7
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Sebastien Jodogne <s.jodogne@gmail.com>
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18
diff
changeset
|
2434 self.assertEqual(1, len(DoGet(_REMOTE, '/instances/%s/content/7fe0-0010' % phenix))) |
2a29bcff60a7
tests of image decoding
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18
diff
changeset
|
2435 self.assertEqual(1, len(DoGet(_REMOTE, '/instances/%s/content/7fe0-0010' % color))) |
2a29bcff60a7
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18
diff
changeset
|
2436 self.assertEqual(2, len(DoGet(_REMOTE, '/instances/%s/content/7fe0-0010' % jpeg))) |
2a29bcff60a7
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Sebastien Jodogne <s.jodogne@gmail.com>
parents:
18
diff
changeset
|
2437 |
2a29bcff60a7
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Sebastien Jodogne <s.jodogne@gmail.com>
parents:
18
diff
changeset
|
2438 self.assertEqual(0, len(DoGet(_REMOTE, '/instances/%s/content/7fe0-0010/0' % jpeg))) |
2a29bcff60a7
tests of image decoding
Sebastien Jodogne <s.jodogne@gmail.com>
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18
diff
changeset
|
2439 self.assertEqual(jpegSize, len(DoGet(_REMOTE, '/instances/%s/content/7fe0-0010/1' % jpeg))) |
2a29bcff60a7
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Sebastien Jodogne <s.jodogne@gmail.com>
parents:
18
diff
changeset
|
2440 |
2a29bcff60a7
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Sebastien Jodogne <s.jodogne@gmail.com>
parents:
18
diff
changeset
|
2441 self.assertEqual(phenixSize, len(DoGet(_REMOTE, '/instances/%s/content/7fe0-0010/0' % phenix))) |
2a29bcff60a7
tests of image decoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
18
diff
changeset
|
2442 self.assertEqual(colorSize, len(DoGet(_REMOTE, '/instances/%s/content/7fe0-0010/0' % color))) |
2a29bcff60a7
tests of image decoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
18
diff
changeset
|
2443 |
2a29bcff60a7
tests of image decoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
18
diff
changeset
|
2444 |
2a29bcff60a7
tests of image decoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
18
diff
changeset
|
2445 def test_decode_brainix(self): |
2a29bcff60a7
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Sebastien Jodogne <s.jodogne@gmail.com>
parents:
18
diff
changeset
|
2446 brainix = [ |
2a29bcff60a7
tests of image decoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
18
diff
changeset
|
2447 UploadInstance(_REMOTE, 'Brainix/Epi/IM-0001-0001.dcm')['ID'], # (*) |
384 | 2448 UploadInstance(_REMOTE, 'Formats/JpegLossless.dcm')['ID'], # JPEG-LS, same as (*) (since Orthanc 0.7.6) => doesn't work on big-endian |
21
2a29bcff60a7
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Sebastien Jodogne <s.jodogne@gmail.com>
parents:
18
diff
changeset
|
2449 UploadInstance(_REMOTE, 'Formats/Jpeg.dcm')['ID'], # JPEG, same as (*) (since Orthanc 0.7.6) |
2a29bcff60a7
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Sebastien Jodogne <s.jodogne@gmail.com>
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18
diff
changeset
|
2450 ] |
2a29bcff60a7
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Sebastien Jodogne <s.jodogne@gmail.com>
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18
diff
changeset
|
2451 h = '6fb11b932d535c2be04beabd99793ff8' |
2a29bcff60a7
tests of image decoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
18
diff
changeset
|
2452 maxValue = 426.0 |
2a29bcff60a7
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Sebastien Jodogne <s.jodogne@gmail.com>
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18
diff
changeset
|
2453 |
2a29bcff60a7
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Sebastien Jodogne <s.jodogne@gmail.com>
parents:
18
diff
changeset
|
2454 truth = Image.open(GetDatabasePath('Formats/Brainix.png')) |
2a29bcff60a7
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Sebastien Jodogne <s.jodogne@gmail.com>
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18
diff
changeset
|
2455 for i in brainix: |
2a29bcff60a7
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parents:
18
diff
changeset
|
2456 self.AssertSameImages(truth.getdata(), '/instances/%s/image-int16' % i) |
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18
diff
changeset
|
2457 self.AssertSameImages(truth.getdata(), '/instances/%s/image-uint16' % i) |
2a29bcff60a7
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18
diff
changeset
|
2458 |
2a29bcff60a7
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18
diff
changeset
|
2459 truth2 = map(lambda x: min(255, x), truth.getdata()) |
2a29bcff60a7
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Sebastien Jodogne <s.jodogne@gmail.com>
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18
diff
changeset
|
2460 for i in brainix: |
2a29bcff60a7
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18
diff
changeset
|
2461 self.AssertSameImages(truth2, '/instances/%s/image-uint8' % i) |
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18
diff
changeset
|
2462 |
2a29bcff60a7
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18
diff
changeset
|
2463 truth2 = map(lambda x: x * 255.0 / maxValue, truth.getdata()) |
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Sebastien Jodogne <s.jodogne@gmail.com>
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18
diff
changeset
|
2464 for i in brainix: |
2a29bcff60a7
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18
diff
changeset
|
2465 self.AssertSameImages(truth2, '/instances/%s/preview' % i) |
2a29bcff60a7
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18
diff
changeset
|
2466 |
2a29bcff60a7
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18
diff
changeset
|
2467 for i in brainix: |
2a29bcff60a7
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18
diff
changeset
|
2468 self.assertEqual(h, ComputeMD5(DoGet(_REMOTE, '/instances/%s/matlab' % i))) |
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18
diff
changeset
|
2469 |
2a29bcff60a7
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Sebastien Jodogne <s.jodogne@gmail.com>
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18
diff
changeset
|
2470 |
2a29bcff60a7
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18
diff
changeset
|
2471 def test_decode_color(self): |
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18
diff
changeset
|
2472 imagej = UploadInstance(_REMOTE, 'ColorTestImageJ.dcm')['ID'] |
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18
diff
changeset
|
2473 color = UploadInstance(_REMOTE, 'ColorTestMalaterre.dcm')['ID'] |
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18
diff
changeset
|
2474 |
2a29bcff60a7
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18
diff
changeset
|
2475 for i in [ imagej, color ]: |
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18
diff
changeset
|
2476 for j in [ 'image-uint8', 'image-uint16', 'image-int16' ]: |
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18
diff
changeset
|
2477 self.assertRaises(Exception, lambda: DoGet(_REMOTE, '/instances/%s/%s' % (i, j))) |
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18
diff
changeset
|
2478 |
2a29bcff60a7
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Sebastien Jodogne <s.jodogne@gmail.com>
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18
diff
changeset
|
2479 self.assertEqual('c14c687f7a1ea9fe022479fc87c67274', ComputeMD5(DoGet(_REMOTE, '/instances/%s/preview' % imagej))) |
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18
diff
changeset
|
2480 self.assertEqual('a87d122918a56f803bcfe9d2586b9125', ComputeMD5(DoGet(_REMOTE, '/instances/%s/preview' % color))) |
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diff
changeset
|
2481 |
2a29bcff60a7
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18
diff
changeset
|
2482 self.assertEqual('30cc46bfa7aba77a40e4178f6184c25a', ComputeMD5(DoGet(_REMOTE, '/instances/%s/matlab' % imagej))) |
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18
diff
changeset
|
2483 self.assertEqual('ff195005cef06b59666fd220a9b4cd9a', ComputeMD5(DoGet(_REMOTE, '/instances/%s/matlab' % color))) |
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18
diff
changeset
|
2484 |
2a29bcff60a7
tests of image decoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
18
diff
changeset
|
2485 |
2a29bcff60a7
tests of image decoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
18
diff
changeset
|
2486 def test_decode_rf(self): |
2a29bcff60a7
tests of image decoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
18
diff
changeset
|
2487 rf = UploadInstance(_REMOTE, 'KarstenHilbertRF.dcm')['ID'] |
2a29bcff60a7
tests of image decoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
18
diff
changeset
|
2488 truth = Image.open(GetDatabasePath('Formats/KarstenHilbertRF.png')) |
2a29bcff60a7
tests of image decoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
18
diff
changeset
|
2489 |
2a29bcff60a7
tests of image decoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
18
diff
changeset
|
2490 self.AssertSameImages(truth.getdata(), '/instances/%s/image-uint8' % rf) |
2a29bcff60a7
tests of image decoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
18
diff
changeset
|
2491 self.AssertSameImages(truth.getdata(), '/instances/%s/image-uint16' % rf) |
2a29bcff60a7
tests of image decoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
18
diff
changeset
|
2492 self.AssertSameImages(truth.getdata(), '/instances/%s/image-int16' % rf) |
2a29bcff60a7
tests of image decoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
18
diff
changeset
|
2493 self.AssertSameImages(truth.getdata(), '/instances/%s/preview' % rf) |
2a29bcff60a7
tests of image decoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
18
diff
changeset
|
2494 |
2a29bcff60a7
tests of image decoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
18
diff
changeset
|
2495 self.assertEqual('42254d70efd2f4a1b8f3455909689f0e', ComputeMD5(DoGet(_REMOTE, '/instances/%s/matlab' % rf))) |
2a29bcff60a7
tests of image decoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
18
diff
changeset
|
2496 |
2a29bcff60a7
tests of image decoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
18
diff
changeset
|
2497 |
2a29bcff60a7
tests of image decoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
18
diff
changeset
|
2498 def test_decode_multiframe(self): |
2a29bcff60a7
tests of image decoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
18
diff
changeset
|
2499 mf = UploadInstance(_REMOTE, 'Multiframe.dcm')['ID'] |
2a29bcff60a7
tests of image decoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
18
diff
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|
2500 |
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tests of image decoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
18
diff
changeset
|
2501 # Test the first frame |
2a29bcff60a7
tests of image decoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
18
diff
changeset
|
2502 truth = Image.open(GetDatabasePath('Formats/Multiframe0.png')) |
2a29bcff60a7
tests of image decoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
18
diff
changeset
|
2503 self.AssertSameImages(truth.getdata(), '/instances/%s/image-uint8' % mf) |
2a29bcff60a7
tests of image decoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
18
diff
changeset
|
2504 self.AssertSameImages(truth.getdata(), '/instances/%s/image-uint16' % mf) |
2a29bcff60a7
tests of image decoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
18
diff
changeset
|
2505 self.AssertSameImages(truth.getdata(), '/instances/%s/image-int16' % mf) |
2a29bcff60a7
tests of image decoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
18
diff
changeset
|
2506 self.AssertSameImages(truth.getdata(), '/instances/%s/preview' % mf) |
2a29bcff60a7
tests of image decoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
18
diff
changeset
|
2507 self.assertEqual('9812b99d93bbcd4e7684ded089b5dfb3', ComputeMD5(DoGet(_REMOTE, '/instances/%s/matlab' % mf))) |
2a29bcff60a7
tests of image decoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
18
diff
changeset
|
2508 |
2a29bcff60a7
tests of image decoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
18
diff
changeset
|
2509 self.AssertSameImages(truth.getdata(), '/instances/%s/frames/0/image-uint16' % mf) |
2a29bcff60a7
tests of image decoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
18
diff
changeset
|
2510 |
2a29bcff60a7
tests of image decoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
18
diff
changeset
|
2511 # Test the last frame |
2a29bcff60a7
tests of image decoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
18
diff
changeset
|
2512 truth = Image.open(GetDatabasePath('Formats/Multiframe75.png')) |
2a29bcff60a7
tests of image decoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
18
diff
changeset
|
2513 self.AssertSameImages(truth.getdata(), '/instances/%s/frames/75/image-uint16' % mf) |
2a29bcff60a7
tests of image decoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
18
diff
changeset
|
2514 |
2a29bcff60a7
tests of image decoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
18
diff
changeset
|
2515 |
2a29bcff60a7
tests of image decoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
18
diff
changeset
|
2516 def test_decode_signed(self): |
2a29bcff60a7
tests of image decoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
18
diff
changeset
|
2517 signed = UploadInstance(_REMOTE, 'SignedCT.dcm')['ID'] |
2a29bcff60a7
tests of image decoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
18
diff
changeset
|
2518 minValue = -2000 |
2a29bcff60a7
tests of image decoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
18
diff
changeset
|
2519 maxValue = 4042 |
2a29bcff60a7
tests of image decoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
18
diff
changeset
|
2520 |
2a29bcff60a7
tests of image decoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
18
diff
changeset
|
2521 truth = Image.open(GetDatabasePath('Formats/SignedCT.png')) |
2a29bcff60a7
tests of image decoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
18
diff
changeset
|
2522 self.AssertSameImages(truth.getdata(), '/instances/%s/image-int16' % signed) |
2a29bcff60a7
tests of image decoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
18
diff
changeset
|
2523 |
2a29bcff60a7
tests of image decoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
18
diff
changeset
|
2524 truth2 = map(lambda x: 0 if x >= 32768 else x, truth.getdata()) |
2a29bcff60a7
tests of image decoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
18
diff
changeset
|
2525 self.AssertSameImages(truth2, '/instances/%s/image-uint16' % signed) |
2a29bcff60a7
tests of image decoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
18
diff
changeset
|
2526 |
2a29bcff60a7
tests of image decoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
18
diff
changeset
|
2527 truth3 = map(lambda x: 255 if x >= 256 else x, truth2) |
2a29bcff60a7
tests of image decoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
18
diff
changeset
|
2528 self.AssertSameImages(truth3, '/instances/%s/image-uint8' % signed) |
2a29bcff60a7
tests of image decoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
18
diff
changeset
|
2529 |
2a29bcff60a7
tests of image decoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
18
diff
changeset
|
2530 tmp = map(lambda x: x - 65536 if x >= 32768 else x, truth.getdata()) |
2a29bcff60a7
tests of image decoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
18
diff
changeset
|
2531 tmp = map(lambda x: (255.0 * (x - minValue)) / (maxValue - minValue), tmp) |
2a29bcff60a7
tests of image decoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
18
diff
changeset
|
2532 self.AssertSameImages(tmp, '/instances/%s/preview' % signed) |
2a29bcff60a7
tests of image decoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
18
diff
changeset
|
2533 |
2a29bcff60a7
tests of image decoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
18
diff
changeset
|
2534 self.assertEqual('b57e6c872a3da50877c7da689b03a444', ComputeMD5(DoGet(_REMOTE, '/instances/%s/matlab' % signed))) |
22 | 2535 |
2536 | |
46
85b2e36ed392
explicit GoogleCode source
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
45
diff
changeset
|
2537 def test_googlecode_issue_32(self): |
92
dbcbffb889da
test_findscu_encoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
89
diff
changeset
|
2538 self.assertRaises(Exception, lambda: DoPut(_REMOTE, '/tools/default-encoding', 'nope')) |
dbcbffb889da
test_findscu_encoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
89
diff
changeset
|
2539 self.assertEqual('Windows1251', DoPut(_REMOTE, '/tools/default-encoding', 'Windows1251')) |
dbcbffb889da
test_findscu_encoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
89
diff
changeset
|
2540 self.assertEqual('Windows1251', DoGet(_REMOTE, '/tools/default-encoding')) |
dbcbffb889da
test_findscu_encoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
89
diff
changeset
|
2541 |
22 | 2542 f = UploadInstance(_REMOTE, 'Issue32.dcm')['ID'] |
2543 tags = DoGet(_REMOTE, '/instances/%s/tags?simplify' % f) | |
2544 self.assertEqual(u'Рентгенография', tags['SeriesDescription']) | |
2545 self.assertEqual(u'Таз', tags['BodyPartExamined']) | |
2546 self.assertEqual(u'Прямая', tags['ViewPosition']) | |
2547 | |
92
dbcbffb889da
test_findscu_encoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
89
diff
changeset
|
2548 # Replay the same test using Latin1 as default encoding: This must fail |
dbcbffb889da
test_findscu_encoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
89
diff
changeset
|
2549 self.assertEqual('Latin1', DoPut(_REMOTE, '/tools/default-encoding', 'Latin1')) |
dbcbffb889da
test_findscu_encoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
89
diff
changeset
|
2550 |
dbcbffb889da
test_findscu_encoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
89
diff
changeset
|
2551 DoDelete(_REMOTE, '/instances/%s' % f) |
dbcbffb889da
test_findscu_encoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
89
diff
changeset
|
2552 f = UploadInstance(_REMOTE, 'Issue32.dcm')['ID'] |
dbcbffb889da
test_findscu_encoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
89
diff
changeset
|
2553 tags = DoGet(_REMOTE, '/instances/%s/tags?simplify' % f) |
dbcbffb889da
test_findscu_encoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
89
diff
changeset
|
2554 self.assertNotEqual(u'Рентгенография', tags['SeriesDescription']) |
dbcbffb889da
test_findscu_encoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
89
diff
changeset
|
2555 |
314 | 2556 # Back to UTF-8 |
2557 self.assertEqual('Utf8', DoPut(_REMOTE, '/tools/default-encoding', 'Utf8')) | |
2558 | |
92
dbcbffb889da
test_findscu_encoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
89
diff
changeset
|
2559 |
22 | 2560 def test_encodings(self): |
23 | 2561 # Latin-1 (ISO_IR 100) |
22 | 2562 brainix = UploadInstance(_REMOTE, 'Brainix/Epi/IM-0001-0001.dcm')['ID'] |
2563 tags = DoGet(_REMOTE, '/instances/%s/tags?simplify' % brainix) | |
2564 self.assertEqual(u'IRM cérébrale, neuro-crâne', tags['StudyDescription']) | |
23 | 2565 |
2566 # Latin-2 (ISO_IR 101) | |
2567 a = UploadInstance(_REMOTE, 'MarekLatin2.dcm')['ID'] | |
2568 i = DoGet(_REMOTE, '/instances/%s/simplified-tags' % a) | |
2569 # dcm2xml MarekLatin2.dcm | iconv -f latin2 -t utf-8 | xmllint --format - | |
2570 self.assertEqual('Imię i Nazwisko osoby opisującej', | |
2571 i['ContentSequence'][4]['ConceptNameCodeSequence'][0]['CodeMeaning'].encode('utf-8')) | |
2572 | |
26
040f6ef1394a
test_storescu_custom_aet
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
23
diff
changeset
|
2573 |
040f6ef1394a
test_storescu_custom_aet
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
23
diff
changeset
|
2574 def test_storescu_custom_aet(self): |
040f6ef1394a
test_storescu_custom_aet
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
23
diff
changeset
|
2575 # This tests a feature introduced in Orthanc 0.9.1: "Custom |
040f6ef1394a
test_storescu_custom_aet
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
23
diff
changeset
|
2576 # setting of the local AET during C-Store SCU (both in Lua and |
040f6ef1394a
test_storescu_custom_aet
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
23
diff
changeset
|
2577 # in the REST API)." |
040f6ef1394a
test_storescu_custom_aet
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
23
diff
changeset
|
2578 # https://groups.google.com/forum/#!msg/orthanc-users/o5qMULformU/wZjW2iSaMcAJ |
040f6ef1394a
test_storescu_custom_aet
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
23
diff
changeset
|
2579 |
040f6ef1394a
test_storescu_custom_aet
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
23
diff
changeset
|
2580 self.assertEqual(0, len(DoGet(_LOCAL, '/patients'))) |
040f6ef1394a
test_storescu_custom_aet
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
23
diff
changeset
|
2581 |
040f6ef1394a
test_storescu_custom_aet
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
23
diff
changeset
|
2582 a = UploadInstance(_REMOTE, 'Knee/T1/IM-0001-0001.dcm') |
040f6ef1394a
test_storescu_custom_aet
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
23
diff
changeset
|
2583 b = UploadInstance(_REMOTE, 'Knee/T1/IM-0001-0002.dcm') |
040f6ef1394a
test_storescu_custom_aet
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
23
diff
changeset
|
2584 c = UploadInstance(_REMOTE, 'Knee/T1/IM-0001-0003.dcm') |
040f6ef1394a
test_storescu_custom_aet
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
23
diff
changeset
|
2585 |
040f6ef1394a
test_storescu_custom_aet
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
23
diff
changeset
|
2586 j = DoPost(_REMOTE, '/modalities/orthanctest/store', { |
040f6ef1394a
test_storescu_custom_aet
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
23
diff
changeset
|
2587 'LocalAet' : 'YOP', |
040f6ef1394a
test_storescu_custom_aet
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
23
diff
changeset
|
2588 'Resources' : [ a['ID'], b['ID'] ] |
040f6ef1394a
test_storescu_custom_aet
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
23
diff
changeset
|
2589 }) |
040f6ef1394a
test_storescu_custom_aet
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
23
diff
changeset
|
2590 |
040f6ef1394a
test_storescu_custom_aet
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
23
diff
changeset
|
2591 self.assertEqual(2, len(DoGet(_LOCAL, '/instances'))) |
040f6ef1394a
test_storescu_custom_aet
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
23
diff
changeset
|
2592 self.assertEqual('YOP', DoGet(_LOCAL, '/instances/%s/metadata/RemoteAET' % a['ID'])) |
040f6ef1394a
test_storescu_custom_aet
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
23
diff
changeset
|
2593 |
040f6ef1394a
test_storescu_custom_aet
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
23
diff
changeset
|
2594 DropOrthanc(_LOCAL) |
040f6ef1394a
test_storescu_custom_aet
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
23
diff
changeset
|
2595 self.assertEqual(0, len(DoGet(_LOCAL, '/instances'))) |
040f6ef1394a
test_storescu_custom_aet
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
23
diff
changeset
|
2596 |
040f6ef1394a
test_storescu_custom_aet
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
23
diff
changeset
|
2597 j = DoPost(_REMOTE, '/modalities/orthanctest/store', { |
040f6ef1394a
test_storescu_custom_aet
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
23
diff
changeset
|
2598 'Resources' : [ c['ID'] ] |
040f6ef1394a
test_storescu_custom_aet
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
23
diff
changeset
|
2599 }) |
040f6ef1394a
test_storescu_custom_aet
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
23
diff
changeset
|
2600 |
040f6ef1394a
test_storescu_custom_aet
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
23
diff
changeset
|
2601 self.assertEqual(1, len(DoGet(_LOCAL, '/instances'))) |
040f6ef1394a
test_storescu_custom_aet
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
23
diff
changeset
|
2602 self.assertEqual('ORTHANC', DoGet(_LOCAL, '/instances/%s/metadata/RemoteAET' % c['ID'])) |
040f6ef1394a
test_storescu_custom_aet
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
23
diff
changeset
|
2603 |
040f6ef1394a
test_storescu_custom_aet
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
23
diff
changeset
|
2604 DropOrthanc(_REMOTE) |
040f6ef1394a
test_storescu_custom_aet
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
23
diff
changeset
|
2605 DropOrthanc(_LOCAL) |
040f6ef1394a
test_storescu_custom_aet
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
23
diff
changeset
|
2606 |
174 | 2607 InstallLuaScriptFromPath(_REMOTE, 'Lua/AutoroutingChangeAet.lua') |
26
040f6ef1394a
test_storescu_custom_aet
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
23
diff
changeset
|
2608 DoPost(_REMOTE, '/tools/execute-script', 'aet = "HELLO"', 'application/lua') |
040f6ef1394a
test_storescu_custom_aet
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
23
diff
changeset
|
2609 |
040f6ef1394a
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2610 self.assertEqual(0, len(DoGet(_LOCAL, '/instances'))) |
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test_storescu_custom_aet
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2611 UploadInstance(_REMOTE, 'Knee/T1/IM-0001-0001.dcm') |
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test_storescu_custom_aet
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2612 WaitEmpty(_REMOTE) |
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test_storescu_custom_aet
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2613 self.assertEqual(1, len(DoGet(_LOCAL, '/instances'))) |
040f6ef1394a
test_storescu_custom_aet
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diff
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2614 self.assertEqual('HELLO', DoGet(_LOCAL, '/instances/%s/metadata/RemoteAET' % a['ID'])) |
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test_storescu_custom_aet
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2615 |
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test_storescu_custom_aet
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2616 DoPost(_REMOTE, '/tools/execute-script', 'aet = nill', 'application/lua') |
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test_storescu_custom_aet
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2617 UploadInstance(_REMOTE, 'Knee/T1/IM-0001-0002.dcm') |
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test_storescu_custom_aet
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2618 WaitEmpty(_REMOTE) |
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test_storescu_custom_aet
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diff
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2619 self.assertEqual(2, len(DoGet(_LOCAL, '/instances'))) |
040f6ef1394a
test_storescu_custom_aet
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diff
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2620 self.assertEqual('ORTHANC', DoGet(_LOCAL, '/instances/%s/metadata/RemoteAET' % b['ID'])) |
34
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2621 |
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2622 def test_resources_since_limit(self): |
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2623 # Upload 16 instances |
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2624 for i in range(4): |
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2625 UploadInstance(_REMOTE, 'Brainix/Flair/IM-0001-000%d.dcm' % (i + 1)) |
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2626 UploadInstance(_REMOTE, 'Brainix/Epi/IM-0001-000%d.dcm' % (i + 1)) |
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2627 UploadInstance(_REMOTE, 'Knee/T1/IM-0001-000%d.dcm' % (i + 1)) |
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2628 UploadInstance(_REMOTE, 'Knee/T2/IM-0001-000%d.dcm' % (i + 1)) |
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2629 |
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2630 self.assertEqual(2, len(DoGet(_REMOTE, '/patients'))) |
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2631 self.assertEqual(2, len(DoGet(_REMOTE, '/studies'))) |
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2632 self.assertEqual(4, len(DoGet(_REMOTE, '/series'))) |
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2633 self.assertEqual(16, len(DoGet(_REMOTE, '/instances'))) |
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diff
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2634 |
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2635 self.assertRaises(Exception, lambda: DoGet(_REMOTE, '/patients&since=10' % i)) |
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diff
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2636 self.assertRaises(Exception, lambda: DoGet(_REMOTE, '/patients&limit=10' % i)) |
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2637 |
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2638 self.assertEqual(0, len(DoGet(_REMOTE, '/patients?since=0&limit=0'))) |
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diff
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2639 self.assertEqual(2, len(DoGet(_REMOTE, '/patients?since=0&limit=100'))) |
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diff
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2640 self.assertEqual(2, len(DoGet(_REMOTE, '/studies?since=0&limit=100'))) |
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2641 self.assertEqual(4, len(DoGet(_REMOTE, '/series?since=0&limit=100'))) |
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diff
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2642 self.assertEqual(16, len(DoGet(_REMOTE, '/instances?since=0&limit=100'))) |
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2643 self.assertEqual(1, len(DoGet(_REMOTE, '/patients?since=1&limit=100'))) |
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diff
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2644 self.assertEqual(0, len(DoGet(_REMOTE, '/patients?since=2&limit=100'))) |
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2645 self.assertEqual(0, len(DoGet(_REMOTE, '/patients?since=3&limit=100'))) |
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diff
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2646 self.assertEqual(1, len(DoGet(_REMOTE, '/studies?since=1&limit=100'))) |
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2647 self.assertEqual(3, len(DoGet(_REMOTE, '/series?since=1&limit=100'))) |
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2648 self.assertEqual(2, len(DoGet(_REMOTE, '/series?since=2&limit=100'))) |
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2649 self.assertEqual(1, len(DoGet(_REMOTE, '/series?since=3&limit=100'))) |
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2650 self.assertEqual(0, len(DoGet(_REMOTE, '/series?since=4&limit=100'))) |
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2651 self.assertEqual(0, len(DoGet(_REMOTE, '/series?since=100&limit=100'))) |
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2652 self.assertEqual(15, len(DoGet(_REMOTE, '/instances?since=1&limit=100'))) |
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|
2653 |
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diff
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|
2654 for limit in [ 1, 2, 3, 7, 16, 17 ]: |
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|
2655 s = {} |
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|
2656 since = 0 |
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|
2657 while True: |
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diff
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|
2658 t = DoGet(_REMOTE, '/instances?since=%d&limit=%d' % (since, limit)) |
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Sebastien Jodogne <s.jodogne@gmail.com>
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diff
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|
2659 if len(t) == 0: |
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diff
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|
2660 break |
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diff
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|
2661 |
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diff
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|
2662 since += len(t) |
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diff
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|
2663 for i in t: |
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diff
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|
2664 s[i] = None |
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diff
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|
2665 |
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diff
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|
2666 self.assertEqual(16, len(s)) |
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2667 for instance in DoGet(_REMOTE, '/instances'): |
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|
2668 self.assertTrue(instance in s) |
36 | 2669 |
2670 | |
2671 def test_create_pdf(self): | |
2672 # Upload 4 instances | |
2673 brainixInstance = UploadInstance(_REMOTE, 'Brainix/Flair/IM-0001-0001.dcm')['ID'] | |
2674 UploadInstance(_REMOTE, 'Brainix/Epi/IM-0001-0001.dcm') | |
2675 UploadInstance(_REMOTE, 'Knee/T1/IM-0001-0001.dcm') | |
2676 UploadInstance(_REMOTE, 'Knee/T2/IM-0001-0001.dcm') | |
2677 | |
2678 brainixPatient = '16738bc3-e47ed42a-43ce044c-a3414a45-cb069bd0' | |
2679 brainixStudy = '27f7126f-4f66fb14-03f4081b-f9341db2-53925988' | |
2680 brainixEpi = '2ac1316d-3e432022-62eabff2-c59f5475-9b1ac3f8' | |
2681 | |
2682 with open(GetDatabasePath('HelloWorld.pdf'), 'rb') as f: | |
2683 pdf = f.read() | |
2684 | |
2685 i = DoPost(_REMOTE, '/tools/create-dicom', | |
2686 json.dumps({ | |
2687 'Tags' : { | |
2688 'PatientName' : 'Jodogne', | |
2689 'Modality' : 'CT', | |
2690 }, | |
2691 'Content' : 'data:application/pdf;base64,' + base64.b64encode(pdf) | |
2692 })) | |
2693 | |
2694 self.assertEqual('Jodogne', DoGet(_REMOTE, '/instances/%s/content/PatientName' % i['ID']).strip()) | |
2695 self.assertEqual('OT', DoGet(_REMOTE, '/instances/%s/content/Modality' % i['ID']).strip()) | |
2696 | |
2697 b = DoGet(_REMOTE, '/instances/%s/content/0042-0011' % i['ID']) | |
2698 self.assertEqual(len(b), len(pdf) + 1) | |
2699 self.assertEqual(ComputeMD5(b), ComputeMD5(pdf + '\0')) | |
2700 | |
2701 self.assertRaises(Exception, lambda: DoPost(_REMOTE, '/tools/create-dicom', | |
2702 json.dumps({ | |
2703 'Parent' : brainixPatient, | |
2704 'Tags' : { | |
2705 'PatientName' : 'Jodogne', | |
2706 } | |
2707 }))) | |
2708 | |
2709 i = DoPost(_REMOTE, '/tools/create-dicom', | |
2710 json.dumps({ | |
2711 'Parent' : brainixPatient, | |
2712 'Tags' : { 'StudyDescription' : 'PDF^Patient' }, | |
2713 'Content' : 'data:application/pdf;base64,' + base64.b64encode(pdf) | |
2714 })) | |
2715 | |
2716 self.assertEqual(brainixPatient, DoGet(_REMOTE, '/instances/%s/patient' % i['ID'])['ID']) | |
2717 | |
2718 i = DoPost(_REMOTE, '/tools/create-dicom', | |
2719 json.dumps({ | |
2720 'Parent' : brainixStudy, | |
2721 'Tags' : { 'SeriesDescription' : 'PDF^Study' }, | |
2722 'Content' : 'data:application/pdf;base64,' + base64.b64encode(pdf) | |
2723 })) | |
2724 | |
2725 self.assertEqual(brainixStudy, DoGet(_REMOTE, '/instances/%s/study' % i['ID'])['ID']) | |
2726 | |
2727 i = DoPost(_REMOTE, '/tools/create-dicom', | |
2728 json.dumps({ | |
2729 'Parent' : brainixEpi, | |
37 | 2730 'Tags' : { 'SpecificCharacterSet' : 'ISO_IR 13' }, |
36 | 2731 'Content' : 'data:application/pdf;base64,' + base64.b64encode(pdf) |
2732 })) | |
2733 | |
2734 self.assertEqual(brainixEpi, DoGet(_REMOTE, '/instances/%s/series' % i['ID'])['ID']) | |
2735 | |
2736 b = DoGet(_REMOTE, '/instances/%s/pdf' % i['ID']) | |
2737 self.assertEqual(len(b), len(pdf)) | |
2738 self.assertEqual(ComputeMD5(b), ComputeMD5(pdf)) | |
2739 | |
2740 self.assertRaises(Exception, lambda: DoGet(_REMOTE, '/instances/%s/pdf' % brainixInstance)) | |
38 | 2741 |
2742 | |
2743 def test_create_series(self): | |
2744 i = DoPost(_REMOTE, '/tools/create-dicom', | |
2745 json.dumps({ | |
2746 'Tags' : { | |
40 | 2747 'SpecificCharacterSet' : 'ISO_IR 100', |
2748 'PatientName' : 'Sébastien Jodogne', | |
38 | 2749 'Modality' : 'CT', |
2750 }, | |
2751 'Content' : [ | |
40 | 2752 { |
2753 'Content': 'data:image/png;base64,iVBORw0KGgoAAAANSUhEUgAAAAUAAAAFCAYAAACNbyblAAAAHElEQVQI12P4//8/w38GIAXDIBKE0DHxgljNBAAO9TXL0Y4OHwAAAABJRU5ErkJggg==', # red dot in RGBA | |
2754 'Tags' : { 'ImageComments' : 'Tutu' } | |
2755 }, | |
38 | 2756 'data:image/png;base64,iVBORw0KGgoAAAANSUhEUgAAABAAAAAQCAYAAAAf8/9hAAAAoUlEQVQ4jZ2SWw3EIBREjwUsYAELa2EtoAULFUCyXAtroRZqoRbox254BdLC/DZnZjoXWJFgCDg8egW2CBEhEnDzyRk+Ecxz2KP/0AL8S99T+jQccAVs22qKwAuPuq0uyNg9cPLh3am+pe/dkHLZtqJHj6vXJrZ7nvzvxxgemXgUwnGfXqpee09mUwp8m022OYP6bLF7mVuVe0y/umxinsAXRd9z0k1ubWsAAAAASUVORK5CYII=', |
2757 ] | |
2758 })) | |
2759 | |
2760 s = DoGet(_REMOTE, i['Path']) | |
2761 self.assertEqual('Series', s['Type']) | |
2762 self.assertEqual(s['ID'], i['ID']) | |
2763 self.assertEqual(2, len(s['Instances'])) | |
39 | 2764 self.assertEqual(2, s['ExpectedNumberOfInstances']) |
2765 self.assertEqual('Complete', s['Status']) | |
40 | 2766 |
2767 a = DoGet(_REMOTE, '/instances/%s/tags?simplify' % s['Instances'][0]) | |
2768 b = DoGet(_REMOTE, '/instances/%s/tags?simplify' % s['Instances'][1]) | |
2769 self.assertTrue('ImageComments' in a or 'ImageComments' in b) | |
2770 if 'ImageComments' in a: | |
2771 self.assertEqual('Tutu', a['ImageComments']) | |
2772 else: | |
2773 self.assertEqual('Tutu', b['ImageComments']) | |
2774 | |
2775 patient = DoGet(_REMOTE, '/instances/%s/patient' % s['Instances'][0]) | |
2776 self.assertEqual(patient['MainDicomTags']['PatientName'].encode('utf-8'), | |
2777 'Sébastien Jodogne') | |
47 | 2778 |
2779 | |
2780 def test_create_binary(self): | |
2781 binary = ''.join(map(chr, range(256))) | |
2782 encoded = 'data:application/octet-stream;base64,' + base64.b64encode(binary) | |
2783 tags = { | |
2784 'PatientName' : 'Jodogne', | |
2785 '8899-8899' : encoded | |
2786 } | |
2787 | |
2788 i = DoPost(_REMOTE, '/tools/create-dicom', | |
2789 json.dumps({ | |
266 | 2790 'Tags' : tags, |
2791 'PrivateCreator' : 'TestBinary', | |
47 | 2792 })) |
2793 | |
2794 self.assertEqual('Jodogne', DoGet(_REMOTE, '/instances/%s/content/PatientName' % i['ID']).strip()) | |
2795 self.assertEqual(binary, DoGet(_REMOTE, '/instances/%s/content/8899-8899' % i['ID']).strip()) | |
2796 | |
2797 i = DoPost(_REMOTE, '/tools/create-dicom', | |
2798 json.dumps({ | |
2799 'InterpretBinaryTags' : False, | |
266 | 2800 'Tags' : tags, |
2801 'PrivateCreator' : 'TestBinary', | |
47 | 2802 })) |
2803 | |
2804 self.assertEqual('Jodogne', DoGet(_REMOTE, '/instances/%s/content/PatientName' % i['ID']).strip()) | |
2805 self.assertEqual(encoded, DoGet(_REMOTE, '/instances/%s/content/8899-8899' % i['ID'])[0:-1]) | |
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2806 |
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2807 |
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2808 def test_patient_ids_collision(self): |
e4352463ff74
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2809 # Upload 3 instances from 3 different studies, but with the |
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2810 # same PatientID |
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2811 for i in range(3): |
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changeset
|
2812 UploadInstance(_REMOTE, 'PatientIdsCollision/Image%d.dcm' % (i + 1)) |
e4352463ff74
test_patient_ids_collision
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
47
diff
changeset
|
2813 |
e4352463ff74
test_patient_ids_collision
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
47
diff
changeset
|
2814 a = DoPost(_REMOTE, '/tools/find', { 'Level' : 'Patient', |
e4352463ff74
test_patient_ids_collision
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
47
diff
changeset
|
2815 'Query' : { 'PatientName' : '*' }}) |
e4352463ff74
test_patient_ids_collision
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
47
diff
changeset
|
2816 self.assertEqual(1, len(a)) |
e4352463ff74
test_patient_ids_collision
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
47
diff
changeset
|
2817 self.assertEqual('COMMON', DoGet(_REMOTE, '/patients/%s' % a[0]) ['MainDicomTags']['PatientID']) |
e4352463ff74
test_patient_ids_collision
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
47
diff
changeset
|
2818 |
e4352463ff74
test_patient_ids_collision
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
47
diff
changeset
|
2819 a = DoPost(_REMOTE, '/tools/find', { 'Level' : 'Study', |
e4352463ff74
test_patient_ids_collision
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
47
diff
changeset
|
2820 'CaseSensitive' : True, |
e4352463ff74
test_patient_ids_collision
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
47
diff
changeset
|
2821 'Query' : { 'PatientName' : 'FOO\\HELLO' }}) |
e4352463ff74
test_patient_ids_collision
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
47
diff
changeset
|
2822 self.assertEqual(2, len(a)) |
e4352463ff74
test_patient_ids_collision
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
47
diff
changeset
|
2823 |
e4352463ff74
test_patient_ids_collision
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
47
diff
changeset
|
2824 a = DoPost(_REMOTE, '/tools/find', { 'Level' : 'Series', |
e4352463ff74
test_patient_ids_collision
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
47
diff
changeset
|
2825 'CaseSensitive' : False, |
e4352463ff74
test_patient_ids_collision
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
47
diff
changeset
|
2826 'Query' : { 'PatientName' : 'Foo' }}) |
e4352463ff74
test_patient_ids_collision
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
47
diff
changeset
|
2827 self.assertEqual(1, len(a)) |
e4352463ff74
test_patient_ids_collision
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
47
diff
changeset
|
2828 self.assertEqual('FOO^SERIES', DoGet(_REMOTE, '/series/%s/study' % a[0]) ['MainDicomTags']['StudyDescription']) |
e4352463ff74
test_patient_ids_collision
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
47
diff
changeset
|
2829 self.assertEqual('FOO', DoGet(_REMOTE, '/series/%s/study' % a[0]) ['PatientMainDicomTags']['PatientName']) |
e4352463ff74
test_patient_ids_collision
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
47
diff
changeset
|
2830 self.assertEqual('COMMON', DoGet(_REMOTE, '/series/%s/study' % a[0]) ['PatientMainDicomTags']['PatientID']) |
e4352463ff74
test_patient_ids_collision
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
47
diff
changeset
|
2831 |
e4352463ff74
test_patient_ids_collision
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
47
diff
changeset
|
2832 a = DoPost(_REMOTE, '/tools/find', { 'Level' : 'Study', |
e4352463ff74
test_patient_ids_collision
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
47
diff
changeset
|
2833 'Query' : { 'PatientName' : '*' }}) |
e4352463ff74
test_patient_ids_collision
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
47
diff
changeset
|
2834 self.assertEqual(3, len(a)) |
e4352463ff74
test_patient_ids_collision
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
47
diff
changeset
|
2835 d = map(lambda x: DoGet(_REMOTE, '/studies/%s' % x) ['MainDicomTags']['StudyDescription'], a) |
e4352463ff74
test_patient_ids_collision
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
47
diff
changeset
|
2836 self.assertTrue('FOO^SERIES' in d) |
e4352463ff74
test_patient_ids_collision
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
47
diff
changeset
|
2837 self.assertTrue('HELLO^SERIES' in d) |
e4352463ff74
test_patient_ids_collision
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
47
diff
changeset
|
2838 self.assertTrue('WORLD^SERIES' in d) |
e4352463ff74
test_patient_ids_collision
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
47
diff
changeset
|
2839 |
e4352463ff74
test_patient_ids_collision
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
47
diff
changeset
|
2840 d = map(lambda x: DoGet(_REMOTE, '/studies/%s' % x) ['PatientMainDicomTags']['PatientID'], a) |
e4352463ff74
test_patient_ids_collision
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
47
diff
changeset
|
2841 self.assertEqual(1, len(set(d))) |
e4352463ff74
test_patient_ids_collision
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
47
diff
changeset
|
2842 self.assertEqual('COMMON', d[0]) |
e4352463ff74
test_patient_ids_collision
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
47
diff
changeset
|
2843 |
e4352463ff74
test_patient_ids_collision
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
47
diff
changeset
|
2844 for i in a: |
e4352463ff74
test_patient_ids_collision
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
47
diff
changeset
|
2845 d = DoGet(_REMOTE, '/studies/%s' % i) ['MainDicomTags']['StudyDescription'] |
e4352463ff74
test_patient_ids_collision
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
47
diff
changeset
|
2846 p = DoGet(_REMOTE, '/studies/%s' % i) ['PatientMainDicomTags']['PatientName'] |
e4352463ff74
test_patient_ids_collision
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
47
diff
changeset
|
2847 self.assertEqual('%s^SERIES' % p, d) |
49
e7f9b8199545
test_bitbucket_issue_4
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
48
diff
changeset
|
2848 |
e7f9b8199545
test_bitbucket_issue_4
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
48
diff
changeset
|
2849 |
e7f9b8199545
test_bitbucket_issue_4
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
48
diff
changeset
|
2850 def test_bitbucket_issue_4(self): |
e7f9b8199545
test_bitbucket_issue_4
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
48
diff
changeset
|
2851 UploadInstance(_REMOTE, 'Brainix/Epi/IM-0001-0001.dcm') |
e7f9b8199545
test_bitbucket_issue_4
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
48
diff
changeset
|
2852 UploadInstance(_REMOTE, 'Brainix/Epi/IM-0001-0002.dcm') |
e7f9b8199545
test_bitbucket_issue_4
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
48
diff
changeset
|
2853 UploadInstance(_REMOTE, 'Brainix/Epi/IM-0001-0003.dcm') |
e7f9b8199545
test_bitbucket_issue_4
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
48
diff
changeset
|
2854 UploadInstance(_REMOTE, 'Formats/Jpeg.dcm') |
e7f9b8199545
test_bitbucket_issue_4
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
48
diff
changeset
|
2855 UploadInstance(_REMOTE, 'Formats/JpegLossless.dcm') |
e7f9b8199545
test_bitbucket_issue_4
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
48
diff
changeset
|
2856 UploadInstance(_REMOTE, 'Formats/Rle.dcm') |
e7f9b8199545
test_bitbucket_issue_4
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
48
diff
changeset
|
2857 |
e7f9b8199545
test_bitbucket_issue_4
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
48
diff
changeset
|
2858 self.assertEqual(0, len(DoGet(_LOCAL, '/instances'))) |
e7f9b8199545
test_bitbucket_issue_4
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
48
diff
changeset
|
2859 self.assertEqual(6, len(DoGet(_REMOTE, '/instances'))) |
e7f9b8199545
test_bitbucket_issue_4
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
48
diff
changeset
|
2860 |
e7f9b8199545
test_bitbucket_issue_4
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
48
diff
changeset
|
2861 p = DoGet(_REMOTE, '/patients') |
e7f9b8199545
test_bitbucket_issue_4
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
48
diff
changeset
|
2862 self.assertEqual(2, len(p)) |
e7f9b8199545
test_bitbucket_issue_4
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
48
diff
changeset
|
2863 i1 = map(lambda x: x['ID'], DoGet(_REMOTE, '/patients/%s/instances' % p[0])) |
e7f9b8199545
test_bitbucket_issue_4
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
48
diff
changeset
|
2864 i2 = map(lambda x: x['ID'], DoGet(_REMOTE, '/patients/%s/instances' % p[1])) |
e7f9b8199545
test_bitbucket_issue_4
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
48
diff
changeset
|
2865 self.assertEqual(3, len(i1)) |
e7f9b8199545
test_bitbucket_issue_4
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
48
diff
changeset
|
2866 self.assertEqual(3, len(i2)) |
e7f9b8199545
test_bitbucket_issue_4
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
48
diff
changeset
|
2867 |
e7f9b8199545
test_bitbucket_issue_4
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
48
diff
changeset
|
2868 j = DoPost(_REMOTE, '/modalities/orthanctest/store', i2[0:1] + i1 + i2[1:3]) |
e7f9b8199545
test_bitbucket_issue_4
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
48
diff
changeset
|
2869 |
e7f9b8199545
test_bitbucket_issue_4
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
48
diff
changeset
|
2870 self.assertEqual(6, len(DoGet(_LOCAL, '/instances'))) |
50
8de63d56cf11
test_create_sequence
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
49
diff
changeset
|
2871 |
8de63d56cf11
test_create_sequence
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
49
diff
changeset
|
2872 |
8de63d56cf11
test_create_sequence
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
49
diff
changeset
|
2873 def test_create_sequence(self): |
8de63d56cf11
test_create_sequence
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
49
diff
changeset
|
2874 i = DoPost(_REMOTE, '/tools/create-dicom', |
8de63d56cf11
test_create_sequence
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
49
diff
changeset
|
2875 json.dumps({ |
8de63d56cf11
test_create_sequence
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
49
diff
changeset
|
2876 'Tags' : { |
8de63d56cf11
test_create_sequence
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
49
diff
changeset
|
2877 'SpecificCharacterSet': 'ISO_IR 100', # Encode using Latin1 |
8de63d56cf11
test_create_sequence
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
49
diff
changeset
|
2878 'PatientName': 'Jodogne^', |
51
264a20a0276d
test_modify_sequence
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
50
diff
changeset
|
2879 'ReferencedStudySequence': GenerateTestSequence(), |
50
8de63d56cf11
test_create_sequence
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
49
diff
changeset
|
2880 } |
8de63d56cf11
test_create_sequence
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
49
diff
changeset
|
2881 }))['ID'] |
8de63d56cf11
test_create_sequence
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
49
diff
changeset
|
2882 |
8de63d56cf11
test_create_sequence
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
49
diff
changeset
|
2883 self.assertEqual('Jodogne^', DoGet(_REMOTE, '/instances/%s/content/PatientName' % i)) |
8de63d56cf11
test_create_sequence
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
49
diff
changeset
|
2884 self.assertEqual('Hello^', DoGet(_REMOTE, '/instances/%s/content/ReferencedStudySequence/0/StudyDescription' % i)) |
8de63d56cf11
test_create_sequence
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
49
diff
changeset
|
2885 self.assertEqual('Toto', DoGet(_REMOTE, '/instances/%s/content/ReferencedStudySequence/0/ReferencedStudySequence/0/StudyDescription' % i)) |
8de63d56cf11
test_create_sequence
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
49
diff
changeset
|
2886 self.assertEqual('Tata', DoGet(_REMOTE, '/instances/%s/content/ReferencedStudySequence/0/ReferencedStudySequence/1/StudyDescription' % i)) |
8de63d56cf11
test_create_sequence
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
49
diff
changeset
|
2887 self.assertEqual(u'Sébastien^'.encode('latin-1'), |
8de63d56cf11
test_create_sequence
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
49
diff
changeset
|
2888 DoGet(_REMOTE, '/instances/%s/content/ReferencedStudySequence/1/StudyDescription' % i)) |
51
264a20a0276d
test_modify_sequence
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
50
diff
changeset
|
2889 |
264a20a0276d
test_modify_sequence
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
50
diff
changeset
|
2890 |
264a20a0276d
test_modify_sequence
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
50
diff
changeset
|
2891 def test_modify_sequence(self): |
264a20a0276d
test_modify_sequence
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
50
diff
changeset
|
2892 i = UploadInstance(_REMOTE, 'PrivateTags.dcm')['ID'] |
264a20a0276d
test_modify_sequence
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
50
diff
changeset
|
2893 self.assertRaises(Exception, lambda: DoGet(_REMOTE, '/instances/%s/content/ReferencedStudySequence' % i)) |
264a20a0276d
test_modify_sequence
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
50
diff
changeset
|
2894 |
264a20a0276d
test_modify_sequence
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
50
diff
changeset
|
2895 j = DoPost(_REMOTE, '/instances/%s/modify' % i, |
264a20a0276d
test_modify_sequence
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
50
diff
changeset
|
2896 json.dumps({ |
264a20a0276d
test_modify_sequence
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
50
diff
changeset
|
2897 "Replace" : { |
264a20a0276d
test_modify_sequence
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
50
diff
changeset
|
2898 "PatientName" : "hello", |
264a20a0276d
test_modify_sequence
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
50
diff
changeset
|
2899 'ReferencedStudySequence': GenerateTestSequence(), |
264a20a0276d
test_modify_sequence
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
50
diff
changeset
|
2900 }, |
264a20a0276d
test_modify_sequence
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
50
diff
changeset
|
2901 }), |
264a20a0276d
test_modify_sequence
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
50
diff
changeset
|
2902 'application/json') |
264a20a0276d
test_modify_sequence
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
50
diff
changeset
|
2903 j = DoPost(_REMOTE, '/instances', j, 'application/dicom')['ID'] |
264a20a0276d
test_modify_sequence
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
50
diff
changeset
|
2904 DoDelete(_REMOTE, '/instances/%s' % i) |
264a20a0276d
test_modify_sequence
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
50
diff
changeset
|
2905 |
52 | 2906 self.assertEqual(2, len(DoGet(_REMOTE, '/instances/%s/content/ReferencedStudySequence' % j))) |
2907 | |
2908 | |
2909 def test_compression(self): | |
2910 i = UploadInstance(_REMOTE, 'DummyCT.dcm')['ID'] | |
2911 | |
380
b9adc7d06347
update tests following removal of dicom-as-json attachments
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
379
diff
changeset
|
2912 aa = DoGet(_REMOTE, '/instances/%s/attachments/' % i) |
b9adc7d06347
update tests following removal of dicom-as-json attachments
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
379
diff
changeset
|
2913 if IsOrthancVersionAbove(_REMOTE, 1, 9, 1): |
b9adc7d06347
update tests following removal of dicom-as-json attachments
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
379
diff
changeset
|
2914 # This file has *no* pixel data, so "dicom-until-pixel-data" is not stored |
b9adc7d06347
update tests following removal of dicom-as-json attachments
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
379
diff
changeset
|
2915 self.assertEqual(1, len(aa)) |
b9adc7d06347
update tests following removal of dicom-as-json attachments
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
379
diff
changeset
|
2916 self.assertTrue('dicom' in aa) |
b9adc7d06347
update tests following removal of dicom-as-json attachments
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
379
diff
changeset
|
2917 else: |
b9adc7d06347
update tests following removal of dicom-as-json attachments
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
379
diff
changeset
|
2918 self.assertEqual(2, len(aa)) |
b9adc7d06347
update tests following removal of dicom-as-json attachments
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
379
diff
changeset
|
2919 self.assertTrue('dicom' in aa) |
b9adc7d06347
update tests following removal of dicom-as-json attachments
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
379
diff
changeset
|
2920 self.assertTrue('dicom-as-json' in aa) |
b9adc7d06347
update tests following removal of dicom-as-json attachments
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
379
diff
changeset
|
2921 |
b9adc7d06347
update tests following removal of dicom-as-json attachments
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
379
diff
changeset
|
2922 data = DoGetRaw(_REMOTE, '/instances/%s/attachments/dicom/data' % i)[1] |
b9adc7d06347
update tests following removal of dicom-as-json attachments
Sebastien Jodogne <s.jodogne@gmail.com>
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2923 |
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2924 # If "StorageCompression" is enabled in the Orthanc to be |
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2925 # tested, uncompress the attachment before running the test |
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2926 if DoGet(_REMOTE, '/instances/%s/attachments/dicom/is-compressed' % i) != 0: |
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2927 DoPost(_REMOTE, '/instances/%s/attachments/dicom/uncompress' % i) |
52 | 2928 |
380
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2929 cs = int(DoGet(_REMOTE, '/statistics')['TotalDiskSize']) |
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2930 us = int(DoGet(_REMOTE, '/statistics')['TotalUncompressedSize']) |
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2931 size = int(DoGet(_REMOTE, '/instances/%s/attachments/dicom/size' % i)) |
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2932 md5 = DoGet(_REMOTE, '/instances/%s/attachments/dicom/md5' % i) |
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2933 self.assertEqual(data, DoGetRaw(_REMOTE, '/instances/%s/attachments/dicom/compressed-data' % i)[1]) |
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2934 self.assertEqual(md5, DoGet(_REMOTE, '/instances/%s/attachments/dicom/compressed-md5' % i)) |
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2935 self.assertEqual(size, int(DoGet(_REMOTE, '/instances/%s/attachments/dicom/compressed-size' % i))) |
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2936 |
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2937 ops = DoGet(_REMOTE, '/instances/%s/attachments/dicom' % i) |
52 | 2938 self.assertTrue('compress' in ops) |
2939 self.assertTrue('uncompress' in ops) | |
2940 self.assertTrue('is-compressed' in ops) | |
380
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2941 self.assertEqual(0, DoGet(_REMOTE, '/instances/%s/attachments/dicom/is-compressed' % i)) |
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2942 DoPost(_REMOTE, '/instances/%s/attachments/dicom/verify-md5' % i) |
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2943 |
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2944 # Re-compress the attachment |
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2945 DoPost(_REMOTE, '/instances/%s/attachments/dicom/compress' % i) |
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2946 DoPost(_REMOTE, '/instances/%s/attachments/dicom/verify-md5' % i) |
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2947 self.assertEqual(1, DoGet(_REMOTE, '/instances/%s/attachments/dicom/is-compressed' % i)) |
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2948 self.assertGreater(cs, int(DoGet(_REMOTE, '/statistics')['TotalDiskSize'])) |
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2949 self.assertEqual(us, int(DoGet(_REMOTE, '/statistics')['TotalUncompressedSize'])) |
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2950 self.assertGreater(len(data), len(DoGetRaw(_REMOTE, '/instances/%s/attachments/dicom/compressed-data' % i)[1])) |
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2951 self.assertGreater(size, int(DoGet(_REMOTE, '/instances/%s/attachments/dicom/compressed-size' % i))) |
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2952 self.assertEqual(size, int(DoGet(_REMOTE, '/instances/%s/attachments/dicom/size' % i))) |
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2953 self.assertEqual(md5, DoGet(_REMOTE, '/instances/%s/attachments/dicom/md5' % i)) |
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2954 self.assertNotEqual(md5, DoGet(_REMOTE, '/instances/%s/attachments/dicom/compressed-md5' % i)) |
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2955 |
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2956 DoPost(_REMOTE, '/instances/%s/attachments/dicom/uncompress' % i) |
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2957 DoPost(_REMOTE, '/instances/%s/attachments/dicom/verify-md5' % i) |
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2958 self.assertEqual(0, DoGet(_REMOTE, '/instances/%s/attachments/dicom/is-compressed' % i)) |
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2959 self.assertEqual(data, DoGetRaw(_REMOTE, '/instances/%s/attachments/dicom/compressed-data' % i)[1]) |
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2960 self.assertEqual(size, int(DoGet(_REMOTE, '/instances/%s/attachments/dicom/compressed-size' % i))) |
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2961 self.assertEqual(size, int(DoGet(_REMOTE, '/instances/%s/attachments/dicom/size' % i))) |
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2962 self.assertEqual(md5, DoGet(_REMOTE, '/instances/%s/attachments/dicom/md5' % i)) |
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2963 self.assertEqual(md5, DoGet(_REMOTE, '/instances/%s/attachments/dicom/compressed-md5' % i)) |
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2964 self.assertEqual(cs, int(DoGet(_REMOTE, '/statistics')['TotalDiskSize'])) |
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2965 self.assertEqual(us, int(DoGet(_REMOTE, '/statistics')['TotalUncompressedSize'])) |
53 | 2966 |
2967 | |
2968 def test_ordered_slices(self): | |
2969 i = UploadInstance(_REMOTE, 'Multiframe.dcm')['ID'] | |
2970 s = DoGet(_REMOTE, '/instances/%s' % i)['ParentSeries'] | |
2971 o = DoGet(_REMOTE, '/series/%s/ordered-slices' % s) | |
2972 self.assertEqual('Sequence', o['Type']) | |
2973 self.assertEqual(1, len(o['Dicom'])) | |
2974 self.assertEqual('/instances/9e05eb0a-18b6268c-e0d36085-8ddab517-3b5aec02/file', o['Dicom'][0]) | |
2975 self.assertEqual(76, len(o['Slices'])) | |
2976 for j in range(76): | |
2977 self.assertEqual('/instances/9e05eb0a-18b6268c-e0d36085-8ddab517-3b5aec02/frames/%d' % j, o['Slices'][j]) | |
2978 | |
68 | 2979 self.assertEqual(1, len(o['SlicesShort'])) |
2980 self.assertEqual('9e05eb0a-18b6268c-e0d36085-8ddab517-3b5aec02', o['SlicesShort'][0][0]) | |
2981 self.assertEqual(0, o['SlicesShort'][0][1]) | |
2982 self.assertEqual(76, o['SlicesShort'][0][2]) | |
2983 | |
53 | 2984 i = UploadInstance(_REMOTE, 'Brainix/Epi/IM-0001-0001.dcm')['ID'] |
2985 j = UploadInstance(_REMOTE, 'Brainix/Epi/IM-0001-0002.dcm')['ID'] | |
2986 k = UploadInstance(_REMOTE, 'Brainix/Epi/IM-0001-0003.dcm')['ID'] | |
2987 s = DoGet(_REMOTE, '/instances/%s' % i)['ParentSeries'] | |
2988 o = DoGet(_REMOTE, '/series/%s/ordered-slices' % s) | |
2989 | |
2990 self.assertEqual('Volume', o['Type']) | |
2991 self.assertEqual(3, len(o['Dicom'])) | |
2992 self.assertEqual(3, len(o['Slices'])) | |
2993 self.assertEqual('/instances/%s/file' % i, o['Dicom'][2]) | |
2994 self.assertEqual('/instances/%s/file' % j, o['Dicom'][1]) | |
2995 self.assertEqual('/instances/%s/file' % k, o['Dicom'][0]) | |
2996 self.assertEqual('/instances/%s/frames/0' % i, o['Slices'][2]) | |
2997 self.assertEqual('/instances/%s/frames/0' % j, o['Slices'][1]) | |
2998 self.assertEqual('/instances/%s/frames/0' % k, o['Slices'][0]) | |
2999 | |
68 | 3000 self.assertEqual(3, len(o['SlicesShort'])) |
3001 self.assertEqual(k, o['SlicesShort'][0][0]) | |
3002 self.assertEqual(0, o['SlicesShort'][0][1]) | |
3003 self.assertEqual(1, o['SlicesShort'][0][2]) | |
3004 self.assertEqual(j, o['SlicesShort'][1][0]) | |
3005 self.assertEqual(0, o['SlicesShort'][1][1]) | |
3006 self.assertEqual(1, o['SlicesShort'][1][2]) | |
3007 self.assertEqual(i, o['SlicesShort'][2][0]) | |
3008 self.assertEqual(0, o['SlicesShort'][2][1]) | |
3009 self.assertEqual(1, o['SlicesShort'][2][2]) | |
3010 | |
53 | 3011 i = UploadInstance(_REMOTE, 'Beaufix/IM-0001-0001.dcm')['ID'] |
3012 j = UploadInstance(_REMOTE, 'Beaufix/IM-0001-0002.dcm')['ID'] | |
3013 s = DoGet(_REMOTE, '/instances/%s' % i)['ParentSeries'] | |
3014 o = DoGet(_REMOTE, '/series/%s/ordered-slices' % s) | |
3015 | |
3016 self.assertEqual('Sequence', o['Type']) | |
3017 self.assertEqual(2, len(o['Dicom'])) | |
3018 self.assertEqual(2, len(o['Slices'])) | |
3019 self.assertEqual('/instances/%s/file' % i, o['Dicom'][0]) | |
3020 self.assertEqual('/instances/%s/file' % j, o['Dicom'][1]) | |
3021 self.assertEqual('/instances/%s/frames/0' % i, o['Slices'][0]) | |
3022 self.assertEqual('/instances/%s/frames/0' % j, o['Slices'][1]) | |
54
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3023 |
68 | 3024 self.assertEqual(2, len(o['SlicesShort'])) |
3025 self.assertEqual(i, o['SlicesShort'][0][0]) | |
3026 self.assertEqual(0, o['SlicesShort'][0][1]) | |
3027 self.assertEqual(1, o['SlicesShort'][0][2]) | |
3028 self.assertEqual(j, o['SlicesShort'][1][0]) | |
3029 self.assertEqual(0, o['SlicesShort'][1][1]) | |
3030 self.assertEqual(1, o['SlicesShort'][1][2]) | |
3031 | |
3032 | |
54
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3033 |
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3034 def test_incoming_movescu_accession(self): |
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3035 UploadInstance(_REMOTE, 'Knee/T1/IM-0001-0001.dcm') |
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3036 |
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3037 # No matching patient, so no job is created |
54
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3038 self.assertEqual(0, len(DoGet(_LOCAL, '/patients'))) |
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3039 CallMoveScu([ '--study', '-k', '0008,0052=STUDY', '-k', 'AccessionNumber=nope' ]) |
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3040 self.assertEqual(0, len(DoGet(_LOCAL, '/patients'))) |
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3041 CallMoveScu([ '--study', '-k', '0008,0052=PATIENT', '-k', 'AccessionNumber=A10003245599' ]) |
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3042 self.assertEqual(0, len(DoGet(_LOCAL, '/patients'))) |
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3043 |
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3044 # 1 Matching patient, track the job |
138 | 3045 self.assertTrue(MonitorJob(_REMOTE, lambda: CallMoveScu([ |
3046 '--study', | |
3047 '-k', '0008,0052=STUDY', | |
3048 '-k', 'AccessionNumber=A10003245599' | |
3049 ]))) | |
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3050 |
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3051 self.assertEqual(1, len(DoGet(_LOCAL, '/patients'))) |
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3052 |
55 | 3053 |
3054 def test_dicom_to_json(self): | |
3055 i = UploadInstance(_REMOTE, 'PrivateMDNTags.dcm')['ID'] | |
60
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3056 j = UploadInstance(_REMOTE, 'PrivateTags.dcm')['ID'] |
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3057 |
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3058 t = DoGet(_REMOTE, '/instances/%s/tags?simplify' % i) |
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3059 with open(GetDatabasePath('PrivateMDNTagsSimplify.json'), 'r') as f: |
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3060 self.assertTrue(CompareTags(t, json.loads(f.read()), [ |
123 | 3061 # Tags for compatibility with DCMTK 3.6.0 |
3062 'RETIRED_OtherPatientIDs', | |
3063 'OtherPatientIDs', | |
3064 'ACR_NEMA_2C_VariablePixelDataGroupLength', | |
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3065 ])) |
55 | 3066 |
3067 t = DoGet(_REMOTE, '/instances/%s/tags' % i) | |
3068 with open(GetDatabasePath('PrivateMDNTagsFull.json'), 'r') as f: | |
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3069 self.assertTrue(CompareTags(t, json.loads(f.read()), [ |
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3070 ])) |
55 | 3071 |
60
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3072 t = DoGet(_REMOTE, '/instances/%s/tags?simplify' % j) |
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3073 with open(GetDatabasePath('PrivateTagsSimplify.json'), 'r') as f: |
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3074 self.assertTrue(CompareTags(t, json.loads(f.read()), [ |
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3075 ])) |
60
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3076 |
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3077 |
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3078 # NB: To get the actual value of the "tags" JSON file, use the |
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3079 # following command: |
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changeset
|
3080 # $ curl http://alice:orthanctest@localhost:8042/instances/d29ead49-43e8601d-72f1e922-7de676ee-ea77c2b4/tags |
60
cd3c7f70f139
test backward compatibility with Orthanc 0.9.4
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
59
diff
changeset
|
3081 t = DoGet(_REMOTE, '/instances/%s/tags' % j) |
cd3c7f70f139
test backward compatibility with Orthanc 0.9.4
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
59
diff
changeset
|
3082 with open(GetDatabasePath('PrivateTagsFull.json'), 'r') as f: |
cd3c7f70f139
test backward compatibility with Orthanc 0.9.4
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
59
diff
changeset
|
3083 a = json.loads(f.read()) |
378
a4b8450a1158
fix test_storescu_transcoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
377
diff
changeset
|
3084 |
a4b8450a1158
fix test_storescu_transcoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
377
diff
changeset
|
3085 # Starting with Orthanc 1.9.1, the DICOM-as-JSON |
380
b9adc7d06347
update tests following removal of dicom-as-json attachments
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
379
diff
changeset
|
3086 # reports are truncated starting with PixelData |
b9adc7d06347
update tests following removal of dicom-as-json attachments
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
379
diff
changeset
|
3087 if IsOrthancVersionAbove(_REMOTE, 1, 9, 1): |
b9adc7d06347
update tests following removal of dicom-as-json attachments
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
379
diff
changeset
|
3088 self.assertFalse('7fe1,0010' in t) |
b9adc7d06347
update tests following removal of dicom-as-json attachments
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
379
diff
changeset
|
3089 self.assertFalse('7fe1,1001' in t) |
378
a4b8450a1158
fix test_storescu_transcoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
377
diff
changeset
|
3090 del a['7fe1,0010'] |
a4b8450a1158
fix test_storescu_transcoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
377
diff
changeset
|
3091 del a['7fe1,1001'] |
380
b9adc7d06347
update tests following removal of dicom-as-json attachments
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
379
diff
changeset
|
3092 else: |
b9adc7d06347
update tests following removal of dicom-as-json attachments
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
379
diff
changeset
|
3093 self.assertTrue('7fe1,0010' in t) |
b9adc7d06347
update tests following removal of dicom-as-json attachments
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
379
diff
changeset
|
3094 self.assertTrue('7fe1,1001' in t) |
378
a4b8450a1158
fix test_storescu_transcoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
377
diff
changeset
|
3095 |
65
09fc27e0899a
patch for testing windows builds
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
64
diff
changeset
|
3096 aa = json.dumps(a).replace('2e+022', '2e+22') |
372
e9b03d8f3b78
fix for DCMTK 3.6.6
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
369
diff
changeset
|
3097 tt = (json.dumps(t) |
e9b03d8f3b78
fix for DCMTK 3.6.6
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
369
diff
changeset
|
3098 .replace('2e+022', '2e+22') |
e9b03d8f3b78
fix for DCMTK 3.6.6
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
369
diff
changeset
|
3099 # The "IllegalPrivatePixelSequence" tag was introduced in DCMTK 3.6.6 dictionary |
e9b03d8f3b78
fix for DCMTK 3.6.6
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
369
diff
changeset
|
3100 .replace('IllegalPrivatePixelSequence', 'Unknown Tag & Data')) |
65
09fc27e0899a
patch for testing windows builds
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
64
diff
changeset
|
3101 self.assertEqual(aa, tt) |
57 | 3102 |
3103 | |
3104 def test_batch_archive(self): | |
3105 UploadInstance(_REMOTE, 'Knee/T1/IM-0001-0001.dcm') | |
3106 UploadInstance(_REMOTE, 'Knee/T1/IM-0001-0002.dcm') | |
3107 UploadInstance(_REMOTE, 'Knee/T2/IM-0001-0001.dcm') | |
3108 UploadInstance(_REMOTE, 'Knee/T2/IM-0001-0002.dcm') | |
3109 UploadInstance(_REMOTE, 'Brainix/Epi/IM-0001-0001.dcm') | |
3110 UploadInstance(_REMOTE, 'Brainix/Epi/IM-0001-0002.dcm') | |
3111 UploadInstance(_REMOTE, 'Brainix/Flair/IM-0001-0001.dcm') | |
3112 UploadInstance(_REMOTE, 'Brainix/Flair/IM-0001-0002.dcm') | |
3113 | |
3114 s = DoPost(_REMOTE, '/tools/create-archive', [ ]) | |
3115 z = zipfile.ZipFile(StringIO(s), "r") | |
3116 self.assertEqual(0, len(z.namelist())) | |
3117 | |
3118 # One patient | |
3119 s = DoPost(_REMOTE, '/tools/create-archive', [ 'ca29faea-b6a0e17f-067743a1-8b778011-a48b2a17' ]) | |
3120 z = zipfile.ZipFile(StringIO(s), "r") | |
3121 self.assertEqual(4, len(z.namelist())) | |
3122 | |
3123 # One patient + twice its study + one series from other patient | |
3124 s = DoPost(_REMOTE, '/tools/create-archive', [ | |
3125 'ca29faea-b6a0e17f-067743a1-8b778011-a48b2a17', | |
3126 '0a9b3153-2512774b-2d9580de-1fc3dcf6-3bd83918', | |
3127 '1e2c125c-411b8e86-3f4fe68e-a7584dd3-c6da78f0' | |
3128 ]) | |
3129 z = zipfile.ZipFile(StringIO(s), "r") | |
3130 self.assertEqual(6, len(z.namelist())) | |
3131 | |
3132 # One patient + one series + one instance | |
3133 s = DoPost(_REMOTE, '/tools/create-archive', [ | |
3134 'ca29faea-b6a0e17f-067743a1-8b778011-a48b2a17', | |
3135 '1e2c125c-411b8e86-3f4fe68e-a7584dd3-c6da78f0', | |
3136 '1d429ccb-bdcc78a1-7d129d6a-ba4966ed-fe4dbd87' | |
3137 ]) | |
3138 z = zipfile.ZipFile(StringIO(s), "r") | |
3139 self.assertEqual(7, len(z.namelist())) | |
59
84378ada15ab
test_decode_brainix_as_jpeg
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
58
diff
changeset
|
3140 |
84378ada15ab
test_decode_brainix_as_jpeg
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
58
diff
changeset
|
3141 |
84378ada15ab
test_decode_brainix_as_jpeg
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
58
diff
changeset
|
3142 def test_decode_brainix_as_jpeg(self): |
84378ada15ab
test_decode_brainix_as_jpeg
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
58
diff
changeset
|
3143 i = UploadInstance(_REMOTE, 'Brainix/Epi/IM-0001-0001.dcm')['ID'] |
84378ada15ab
test_decode_brainix_as_jpeg
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
58
diff
changeset
|
3144 |
84378ada15ab
test_decode_brainix_as_jpeg
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
58
diff
changeset
|
3145 j = GetImage(_REMOTE, '/instances/%s/preview' % i) |
84378ada15ab
test_decode_brainix_as_jpeg
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
58
diff
changeset
|
3146 self.assertEqual('PNG', j.format) |
84378ada15ab
test_decode_brainix_as_jpeg
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
58
diff
changeset
|
3147 self.assertEqual(j.size[0], 256) |
84378ada15ab
test_decode_brainix_as_jpeg
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
58
diff
changeset
|
3148 self.assertEqual(j.size[1], 256) |
84378ada15ab
test_decode_brainix_as_jpeg
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
58
diff
changeset
|
3149 |
84378ada15ab
test_decode_brainix_as_jpeg
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
58
diff
changeset
|
3150 j = GetImage(_REMOTE, '/instances/%s/preview' % i, headers = { 'Accept' : '*/*' }) |
84378ada15ab
test_decode_brainix_as_jpeg
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
58
diff
changeset
|
3151 self.assertEqual('PNG', j.format) |
84378ada15ab
test_decode_brainix_as_jpeg
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
58
diff
changeset
|
3152 |
84378ada15ab
test_decode_brainix_as_jpeg
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
58
diff
changeset
|
3153 j = GetImage(_REMOTE, '/instances/%s/preview' % i, headers = { 'Accept' : 'image/*' }) |
84378ada15ab
test_decode_brainix_as_jpeg
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
58
diff
changeset
|
3154 self.assertEqual('PNG', j.format) |
84378ada15ab
test_decode_brainix_as_jpeg
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
58
diff
changeset
|
3155 |
84378ada15ab
test_decode_brainix_as_jpeg
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
58
diff
changeset
|
3156 j = GetImage(_REMOTE, '/instances/%s/preview' % i, headers = { 'Accept' : 'image/png' }) |
84378ada15ab
test_decode_brainix_as_jpeg
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
58
diff
changeset
|
3157 self.assertEqual('PNG', j.format) |
84378ada15ab
test_decode_brainix_as_jpeg
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
58
diff
changeset
|
3158 |
84378ada15ab
test_decode_brainix_as_jpeg
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
58
diff
changeset
|
3159 j = GetImage(_REMOTE, '/instances/%s/preview' % i, headers = { 'Accept' : 'image/jpeg' }) |
84378ada15ab
test_decode_brainix_as_jpeg
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
58
diff
changeset
|
3160 self.assertEqual('JPEG', j.format) |
84378ada15ab
test_decode_brainix_as_jpeg
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
58
diff
changeset
|
3161 self.assertEqual(j.size[0], 256) |
84378ada15ab
test_decode_brainix_as_jpeg
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
58
diff
changeset
|
3162 self.assertEqual(j.size[1], 256) |
84378ada15ab
test_decode_brainix_as_jpeg
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
58
diff
changeset
|
3163 |
84378ada15ab
test_decode_brainix_as_jpeg
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
58
diff
changeset
|
3164 a = len(DoGet(_REMOTE, '/instances/%s/preview?quality=50' % i, headers = { 'Accept' : 'image/jpeg' })) |
84378ada15ab
test_decode_brainix_as_jpeg
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
58
diff
changeset
|
3165 b = len(DoGet(_REMOTE, '/instances/%s/preview' % i, headers = { 'Accept' : 'image/jpeg' })) |
84378ada15ab
test_decode_brainix_as_jpeg
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
58
diff
changeset
|
3166 self.assertLess(a, b) |
84378ada15ab
test_decode_brainix_as_jpeg
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
58
diff
changeset
|
3167 |
84378ada15ab
test_decode_brainix_as_jpeg
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
58
diff
changeset
|
3168 j = GetImage(_REMOTE, '/instances/%s/image-uint8' % i, headers = { 'Accept' : 'image/jpeg' }) |
84378ada15ab
test_decode_brainix_as_jpeg
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
58
diff
changeset
|
3169 self.assertEqual('JPEG', j.format) |
84378ada15ab
test_decode_brainix_as_jpeg
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
58
diff
changeset
|
3170 |
84378ada15ab
test_decode_brainix_as_jpeg
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
58
diff
changeset
|
3171 # 16bit encoding is not supported with JPEG |
84378ada15ab
test_decode_brainix_as_jpeg
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
58
diff
changeset
|
3172 self.assertRaises(Exception, lambda: GetImage(_REMOTE, '/instances/%s/image-uint16' % i, headers = { 'Accept' : 'image/jpeg' })) |
84378ada15ab
test_decode_brainix_as_jpeg
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
58
diff
changeset
|
3173 self.assertRaises(Exception, lambda: GetImage(_REMOTE, '/instances/%s/image-int16' % i, headers = { 'Accept' : 'image/jpeg' })) |
84378ada15ab
test_decode_brainix_as_jpeg
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
58
diff
changeset
|
3174 |
84378ada15ab
test_decode_brainix_as_jpeg
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
58
diff
changeset
|
3175 # No matching content type |
84378ada15ab
test_decode_brainix_as_jpeg
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
58
diff
changeset
|
3176 self.assertRaises(Exception, lambda: GetImage(_REMOTE, '/instances/%s/preview' % i, headers = { 'Accept' : 'application/pdf' })) |
69
83fd88230097
test_media_encodings
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
68
diff
changeset
|
3177 |
83fd88230097
test_media_encodings
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
68
diff
changeset
|
3178 |
83fd88230097
test_media_encodings
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
68
diff
changeset
|
3179 |
83fd88230097
test_media_encodings
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
68
diff
changeset
|
3180 def test_media_encodings(self): |
83fd88230097
test_media_encodings
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
68
diff
changeset
|
3181 ascii = UploadInstance(_REMOTE, 'Knee/T1/IM-0001-0001.dcm')['ID'] |
83fd88230097
test_media_encodings
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
68
diff
changeset
|
3182 latin1 = UploadInstance(_REMOTE, 'Brainix/Epi/IM-0001-0001.dcm')['ID'] |
83fd88230097
test_media_encodings
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
68
diff
changeset
|
3183 latin2 = UploadInstance(_REMOTE, 'MarekLatin2.dcm')['ID'] |
83fd88230097
test_media_encodings
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
68
diff
changeset
|
3184 |
83fd88230097
test_media_encodings
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
68
diff
changeset
|
3185 tmp = DoPost(_REMOTE, '/tools/create-media', [ascii,latin1,latin2]) |
83fd88230097
test_media_encodings
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
68
diff
changeset
|
3186 z = zipfile.ZipFile(StringIO(tmp), "r") |
83fd88230097
test_media_encodings
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
68
diff
changeset
|
3187 |
83fd88230097
test_media_encodings
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
68
diff
changeset
|
3188 self.assertEqual(4, len(z.namelist())) |
83fd88230097
test_media_encodings
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
68
diff
changeset
|
3189 self.assertTrue('IMAGES/IM0' in z.namelist()) |
83fd88230097
test_media_encodings
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
68
diff
changeset
|
3190 self.assertTrue('IMAGES/IM1' in z.namelist()) |
83fd88230097
test_media_encodings
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
68
diff
changeset
|
3191 self.assertTrue('IMAGES/IM2' in z.namelist()) |
83fd88230097
test_media_encodings
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
68
diff
changeset
|
3192 self.assertTrue('DICOMDIR' in z.namelist()) |
83fd88230097
test_media_encodings
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
68
diff
changeset
|
3193 |
83fd88230097
test_media_encodings
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
68
diff
changeset
|
3194 try: |
83fd88230097
test_media_encodings
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
68
diff
changeset
|
3195 os.remove('/tmp/DICOMDIR') |
83fd88230097
test_media_encodings
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
68
diff
changeset
|
3196 except: |
83fd88230097
test_media_encodings
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
68
diff
changeset
|
3197 # The file does not exist |
83fd88230097
test_media_encodings
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
68
diff
changeset
|
3198 pass |
83fd88230097
test_media_encodings
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
68
diff
changeset
|
3199 |
83fd88230097
test_media_encodings
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
68
diff
changeset
|
3200 z.extract('DICOMDIR', '/tmp') |
83fd88230097
test_media_encodings
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
68
diff
changeset
|
3201 a = subprocess.check_output([ FindExecutable('dciodvfy'), '/tmp/DICOMDIR' ], |
83fd88230097
test_media_encodings
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
68
diff
changeset
|
3202 stderr = subprocess.STDOUT).split('\n') |
83fd88230097
test_media_encodings
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
68
diff
changeset
|
3203 |
83fd88230097
test_media_encodings
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
68
diff
changeset
|
3204 a = subprocess.check_output([ FindExecutable('dcentvfy'), '/tmp/DICOMDIR' ], |
83fd88230097
test_media_encodings
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
68
diff
changeset
|
3205 stderr = subprocess.STDOUT).split('\n') |
83fd88230097
test_media_encodings
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
68
diff
changeset
|
3206 self.assertEqual(1, len(a)) |
83fd88230097
test_media_encodings
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
68
diff
changeset
|
3207 self.assertEqual('', a[0]) |
83fd88230097
test_media_encodings
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
68
diff
changeset
|
3208 |
83fd88230097
test_media_encodings
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
68
diff
changeset
|
3209 a = subprocess.check_output([ FindExecutable('dcm2xml'), '/tmp/DICOMDIR' ]) |
83fd88230097
test_media_encodings
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
68
diff
changeset
|
3210 self.assertTrue(re.search('1.3.46.670589.11.17521.5.0.3124.2008081908590448738', a) != None) |
83fd88230097
test_media_encodings
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
68
diff
changeset
|
3211 self.assertTrue(re.search('1.3.46.670589.11.0.0.11.4.2.0.8743.5.5396.2006120114333648576', a) != None) |
83fd88230097
test_media_encodings
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
68
diff
changeset
|
3212 self.assertTrue(re.search('1.2.826.0.1.3680043.2.1569.1.4.323026757.1700.1399452091.57', a) != None) |
83fd88230097
test_media_encodings
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diff
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|
3213 |
83fd88230097
test_media_encodings
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diff
changeset
|
3214 os.remove('/tmp/DICOMDIR') |
71
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diff
changeset
|
3215 |
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diff
changeset
|
3216 |
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diff
changeset
|
3217 def test_findscu_counters(self): |
48740070cbf1
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diff
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|
3218 UploadInstance(_REMOTE, 'Comunix/Ct/IM-0001-0001.dcm') |
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diff
changeset
|
3219 UploadInstance(_REMOTE, 'Comunix/Pet/IM-0001-0001.dcm') |
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diff
changeset
|
3220 UploadInstance(_REMOTE, 'Comunix/Pet/IM-0001-0002.dcm') |
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diff
changeset
|
3221 |
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diff
changeset
|
3222 i = CallFindScu([ '-k', '0008,0052=PATIENT', '-k', 'NumberOfPatientRelatedStudies' ]) |
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diff
changeset
|
3223 s = re.findall('\(0020,1200\).*?\[(.*?)\]', i) |
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diff
changeset
|
3224 self.assertEqual(1, len(s)) |
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70
diff
changeset
|
3225 self.assertTrue('1 ' in s) |
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parents:
70
diff
changeset
|
3226 |
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parents:
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diff
changeset
|
3227 i = CallFindScu([ '-k', '0008,0052=PATIENT', '-k', 'NumberOfPatientRelatedSeries' ]) |
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Sebastien Jodogne <s.jodogne@gmail.com>
parents:
70
diff
changeset
|
3228 s = re.findall('\(0020,1202\).*?\[(.*?)\]', i) |
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parents:
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diff
changeset
|
3229 self.assertEqual(1, len(s)) |
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parents:
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diff
changeset
|
3230 self.assertTrue('2 ' in s) |
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parents:
70
diff
changeset
|
3231 |
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parents:
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diff
changeset
|
3232 i = CallFindScu([ '-k', '0008,0052=PATIENT', '-k', 'NumberOfPatientRelatedInstances' ]) |
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70
diff
changeset
|
3233 s = re.findall('\(0020,1204\).*?\[(.*?)\]', i) |
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Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
changeset
|
3234 self.assertEqual(1, len(s)) |
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parents:
70
diff
changeset
|
3235 self.assertTrue('3 ' in s) |
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parents:
70
diff
changeset
|
3236 |
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parents:
70
diff
changeset
|
3237 i = CallFindScu([ '-k', '0008,0052=STUDY', '-k', 'NumberOfStudyRelatedSeries' ]) |
48740070cbf1
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Sebastien Jodogne <s.jodogne@gmail.com>
parents:
70
diff
changeset
|
3238 s = re.findall('\(0020,1206\).*?\[(.*?)\]', i) |
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Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
changeset
|
3239 self.assertEqual(1, len(s)) |
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Sebastien Jodogne <s.jodogne@gmail.com>
parents:
70
diff
changeset
|
3240 self.assertTrue('2 ' in s) |
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Sebastien Jodogne <s.jodogne@gmail.com>
parents:
70
diff
changeset
|
3241 |
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parents:
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diff
changeset
|
3242 i = CallFindScu([ '-k', '0008,0052=STUDY', '-k', 'NumberOfStudyRelatedInstances' ]) |
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diff
changeset
|
3243 s = re.findall('\(0020,1208\).*?\[(.*?)\]', i) |
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parents:
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diff
changeset
|
3244 self.assertEqual(1, len(s)) |
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Sebastien Jodogne <s.jodogne@gmail.com>
parents:
70
diff
changeset
|
3245 self.assertTrue('3 ' in s) |
48740070cbf1
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Sebastien Jodogne <s.jodogne@gmail.com>
parents:
70
diff
changeset
|
3246 |
48740070cbf1
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parents:
70
diff
changeset
|
3247 i = CallFindScu([ '-k', '0008,0052=SERIES', '-k', 'NumberOfSeriesRelatedInstances' ]) |
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Sebastien Jodogne <s.jodogne@gmail.com>
parents:
70
diff
changeset
|
3248 s = re.findall('\(0020,1209\).*?\[(.*?)\]', i) |
48740070cbf1
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Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
changeset
|
3249 self.assertEqual(2, len(s)) |
48740070cbf1
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Sebastien Jodogne <s.jodogne@gmail.com>
parents:
70
diff
changeset
|
3250 self.assertTrue('1 ' in s) |
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Sebastien Jodogne <s.jodogne@gmail.com>
parents:
70
diff
changeset
|
3251 self.assertTrue('2 ' in s) |
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parents:
70
diff
changeset
|
3252 |
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diff
changeset
|
3253 i = CallFindScu([ '-k', '0008,0052=STUDY', '-k', 'ModalitiesInStudy' ]) |
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70
diff
changeset
|
3254 s = re.findall('\(0008,0061\).*?\[(.*?)\]', i) |
48740070cbf1
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diff
changeset
|
3255 self.assertEqual(1, len(s)) |
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parents:
70
diff
changeset
|
3256 t = map(lambda x: x.strip(), s[0].split('\\')) |
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diff
changeset
|
3257 self.assertTrue('PT' in t) |
48740070cbf1
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Sebastien Jodogne <s.jodogne@gmail.com>
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70
diff
changeset
|
3258 self.assertTrue('CT' in t) |
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parents:
70
diff
changeset
|
3259 |
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parents:
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diff
changeset
|
3260 i = CallFindScu([ '-k', '0008,0052=STUDY', '-k', 'SOPClassesInStudy' ]) |
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changeset
|
3261 s = re.findall('\(0008,0062\).*?\[(.*?)\]', i) |
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parents:
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diff
changeset
|
3262 self.assertEqual(1, len(s)) |
176
48cc188ffb09
strip trailing 0 char that appears with some findscu versions
am@osimis.io
parents:
175
diff
changeset
|
3263 t = map(lambda x: x.strip('\x00'), s[0].split('\\')) |
71
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changeset
|
3264 self.assertTrue('1.2.840.10008.5.1.4.1.1.2' in t) |
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diff
changeset
|
3265 self.assertTrue('1.2.840.10008.5.1.4.1.1.128' in t) |
48740070cbf1
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diff
changeset
|
3266 |
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diff
changeset
|
3267 |
78
b89af51797ff
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Sebastien Jodogne <s.jodogne@gmail.com>
parents:
74
diff
changeset
|
3268 def test_decode_transfer_syntax(self): |
b89af51797ff
test_decode_transfer_syntax
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parents:
74
diff
changeset
|
3269 def Check(t, md5): |
b89af51797ff
test_decode_transfer_syntax
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parents:
74
diff
changeset
|
3270 i = UploadInstance(_REMOTE, 'TransferSyntaxes/%s.dcm' % t)['ID'] |
b89af51797ff
test_decode_transfer_syntax
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parents:
74
diff
changeset
|
3271 |
89
74b7b9aed5f8
test TransferSyntax metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
87
diff
changeset
|
3272 if t != '1.2.840.10008.1.2': # This file has no meta header |
74b7b9aed5f8
test TransferSyntax metadata
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parents:
87
diff
changeset
|
3273 transferSyntax = DoGet(_REMOTE, '/instances/%s/metadata/TransferSyntax' % i) |
74b7b9aed5f8
test TransferSyntax metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
changeset
|
3274 self.assertEqual(t, transferSyntax) |
74b7b9aed5f8
test TransferSyntax metadata
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diff
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3275 |
78
b89af51797ff
test_decode_transfer_syntax
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diff
changeset
|
3276 if md5 == None: |
b89af51797ff
test_decode_transfer_syntax
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diff
changeset
|
3277 self.assertRaises(Exception, lambda: DoGet(_REMOTE, '/instances/%s/preview' % i)) |
b89af51797ff
test_decode_transfer_syntax
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parents:
74
diff
changeset
|
3278 else: |
b89af51797ff
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Sebastien Jodogne <s.jodogne@gmail.com>
parents:
74
diff
changeset
|
3279 m = ComputeMD5(DoGet(_REMOTE, '/instances/%s/preview' % i)) |
b89af51797ff
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Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
changeset
|
3280 self.assertEqual(m, md5) |
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parents:
74
diff
changeset
|
3281 |
b89af51797ff
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parents:
74
diff
changeset
|
3282 Check('1.2.840.10008.1.2.1', 'fae08d5415c4c0cd2cdbae4522408631') |
b89af51797ff
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Sebastien Jodogne <s.jodogne@gmail.com>
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74
diff
changeset
|
3283 Check('1.2.840.10008.1.2.2', 'f3d9784768b8feb54d6a50b6d5c37682') |
b89af51797ff
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Sebastien Jodogne <s.jodogne@gmail.com>
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74
diff
changeset
|
3284 Check('1.2.840.10008.1.2.4.51', 'ccbe75909fe5c9f7361b48416a53fc41') |
b89af51797ff
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Sebastien Jodogne <s.jodogne@gmail.com>
parents:
74
diff
changeset
|
3285 Check('1.2.840.10008.1.2.4.57', '7bbefe11d976b1be4e568915c6a82fc3') |
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74
diff
changeset
|
3286 Check('1.2.840.10008.1.2.4.70', '7132cfbc457305b04b59787030c785d2') |
384 | 3287 Check('1.2.840.10008.1.2.5', '6ff51ae525d362e0d04f550a64075a0e') # RLE, supported since Orthanc 1.0.1 |
3288 Check('1.2.840.10008.1.2', 'd54aed9f67a100984b42942cc2e9939b') | |
3289 | |
3290 # The 3 checks below don't work on big-endian | |
3291 Check('1.2.840.10008.1.2.4.50', '496326046974eea718dbc16b997c646b') # TODO - Doesn't work with GDCM 3.0.7 alone | |
78
b89af51797ff
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74
diff
changeset
|
3292 Check('1.2.840.10008.1.2.4.80', '6ff51ae525d362e0d04f550a64075a0e') |
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74
diff
changeset
|
3293 Check('1.2.840.10008.1.2.4.81', '801579ae7cbf28e604ea74f2c99fa2ca') |
299
c2144cf4bd83
HasGdcmPlugin() test
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293
diff
changeset
|
3294 |
c2144cf4bd83
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293
diff
changeset
|
3295 # JPEG2k image, not supported without GDCM plugin |
304 | 3296 if not HasGdcmPlugin(_REMOTE): |
299
c2144cf4bd83
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diff
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|
3297 Check('1.2.840.10008.1.2.4.90', None) |
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|
3298 Check('1.2.840.10008.1.2.4.91', None) |
79 | 3299 |
3300 | |
3301 def test_raw_frame(self): | |
3302 s = UploadInstance(_REMOTE, 'Issue22.dcm')['ID'] | |
3303 self.assertEqual(24, len(DoGet(_REMOTE, '/instances/%s/frames' % s))) | |
3304 a = DoGet(_REMOTE, '/instances/%s/frames/0/raw' % s) | |
3305 self.assertEqual(512 * 512 * 2, len(a)) | |
3306 self.assertEqual(512 * 512 * 2, len(DoGet(_REMOTE, '/instances/%s/frames/23/raw' % s))) | |
3307 self.assertRaises(Exception, lambda: DoGet(_REMOTE, '/instances/%s/frames/24/raw' % s)) | |
3308 self.assertEqual('1914287dc4d958eca21fdaacfb3482fa', ComputeMD5(a)) | |
3309 | |
3310 s = UploadInstance(_REMOTE, 'Multiframe.dcm')['ID'] | |
3311 self.assertEqual(76, len(DoGet(_REMOTE, '/instances/%s/frames' % s))) | |
3312 self.assertEqual(186274, len(DoGet(_REMOTE, '/instances/%s/frames/0/raw' % s))) | |
3313 self.assertEqual(189424, len(DoGet(_REMOTE, '/instances/%s/frames/75/raw' % s))) | |
3314 self.assertRaises(Exception, lambda: DoGet(_REMOTE, '/instances/%s/frames/76/raw' % s)) | |
3315 im = GetImage(_REMOTE, '/instances/%s/frames/0/raw' % s) | |
3316 self.assertEqual("L", im.mode) | |
3317 self.assertEqual(512, im.size[0]) | |
3318 self.assertEqual(512, im.size[1]) | |
3319 | |
3320 # Test an image with 2 JPEG frames spread over multiple fragments | |
3321 s = UploadInstance(_REMOTE, 'LenaTwiceWithFragments.dcm')['ID'] | |
3322 self.assertEqual(2, len(DoGet(_REMOTE, '/instances/%s/frames' % s))) | |
3323 a = DoGet(_REMOTE, '/instances/%s/frames/0/raw' % s) | |
3324 b = DoGet(_REMOTE, '/instances/%s/frames/1/raw' % s) | |
3325 self.assertEqual(69214, len(a)) | |
3326 self.assertEqual(ComputeMD5(a), ComputeMD5(b)) | |
3327 self.assertRaises(Exception, lambda: DoGet(_REMOTE, '/instances/%s/frames/2/raw' % s)) | |
3328 im = GetImage(_REMOTE, '/instances/%s/frames/0/raw' % s) | |
3329 self.assertEqual("RGB", im.mode) | |
3330 self.assertEqual(512, im.size[0]) | |
3331 self.assertEqual(512, im.size[1]) | |
323 | 3332 im = GetImage(_REMOTE, '/instances/%s/frames/0/preview' % s) # TODO - Doesn't work with GDCM 3.0.7 alone |
79 | 3333 self.assertEqual("RGB", im.mode) |
3334 self.assertEqual(512, im.size[0]) | |
3335 self.assertEqual(512, im.size[1]) | |
81 | 3336 |
3337 | |
3338 | |
3339 def test_rest_movescu(self): | |
3340 self.assertEqual(0, len(DoGet(_REMOTE, '/patients'))) | |
3341 | |
3342 # Upload 4 instances | |
3343 UploadInstance(_REMOTE, 'Brainix/Flair/IM-0001-0001.dcm') | |
3344 UploadInstance(_REMOTE, 'Brainix/Flair/IM-0001-0002.dcm') | |
3345 UploadInstance(_REMOTE, 'Brainix/Epi/IM-0001-0001.dcm') | |
3346 UploadInstance(_REMOTE, 'Knee/T2/IM-0001-0001.dcm') | |
3347 | |
3348 self.assertEqual(2, len(DoGet(_REMOTE, '/patients'))) | |
3349 for p in DoGet(_REMOTE, '/patients'): | |
3350 DoPost(_REMOTE, '/modalities/orthanctest/store', p) | |
3351 DoDelete(_REMOTE, '/patients/%s' % p) | |
3352 | |
3353 self.assertEqual(0, len(DoGet(_REMOTE, '/patients'))) | |
3354 | |
3355 # Upload instance Brainix/Flair/IM-0001-0001.dcm | |
3356 DoPost(_REMOTE, '/modalities/orthanctest/move', { 'Level' : 'Instance', | |
3357 'Resources' : [ | |
3358 { | |
3359 'StudyInstanceUID' : '2.16.840.1.113669.632.20.1211.10000357775', | |
3360 'SeriesInstanceUID' : '1.3.46.670589.11.0.0.11.4.2.0.8743.5.5396.2006120114285654497', | |
3361 'SOPInstanceUID' : '1.3.46.670589.11.0.0.11.4.2.0.8743.5.5396.2006120114314079549', | |
3362 } | |
3363 ]}) | |
3364 | |
3365 # Upload series Brainix/Flair/* | |
3366 self.assertEqual(1, len(DoGet(_REMOTE, '/patients'))) | |
3367 self.assertEqual(1, len(DoGet(_REMOTE, '/studies'))) | |
3368 self.assertEqual(1, len(DoGet(_REMOTE, '/series'))) | |
3369 self.assertEqual(1, len(DoGet(_REMOTE, '/instances'))) | |
3370 | |
3371 DoPost(_REMOTE, '/modalities/orthanctest/move', { 'Level' : 'Series', | |
3372 'Resources' : [ | |
3373 { | |
3374 'StudyInstanceUID' : '2.16.840.1.113669.632.20.1211.10000357775', | |
3375 'SeriesInstanceUID' : '1.3.46.670589.11.0.0.11.4.2.0.8743.5.5396.2006120114285654497', | |
3376 } | |
3377 ]}) | |
3378 self.assertEqual(1, len(DoGet(_REMOTE, '/patients'))) | |
3379 self.assertEqual(1, len(DoGet(_REMOTE, '/studies'))) | |
3380 self.assertEqual(1, len(DoGet(_REMOTE, '/series'))) | |
3381 self.assertEqual(2, len(DoGet(_REMOTE, '/instances'))) | |
3382 | |
3383 # Upload series Brainix/Epi/* | |
3384 DoPost(_REMOTE, '/modalities/orthanctest/move', { 'Level' : 'Series', | |
3385 'Resources' : [ | |
3386 { | |
3387 'StudyInstanceUID' : '2.16.840.1.113669.632.20.1211.10000357775', | |
3388 'SeriesInstanceUID' : '1.3.46.670589.11.0.0.11.4.2.0.8743.5.5396.2006120114314125550', | |
3389 } | |
3390 ]}) | |
3391 self.assertEqual(1, len(DoGet(_REMOTE, '/patients'))) | |
3392 self.assertEqual(1, len(DoGet(_REMOTE, '/studies'))) | |
3393 self.assertEqual(2, len(DoGet(_REMOTE, '/series'))) | |
3394 self.assertEqual(3, len(DoGet(_REMOTE, '/instances'))) | |
3395 | |
3396 # Upload study Knee/* | |
3397 DoPost(_REMOTE, '/modalities/orthanctest/move', { 'Level' : 'Study', | |
3398 'Resources' : [ | |
3399 { | |
3400 'StudyInstanceUID' : '2.16.840.1.113669.632.20.121711.10000160881', | |
3401 } | |
3402 ]}) | |
3403 self.assertEqual(2, len(DoGet(_REMOTE, '/patients'))) | |
3404 self.assertEqual(2, len(DoGet(_REMOTE, '/studies'))) | |
3405 self.assertEqual(3, len(DoGet(_REMOTE, '/series'))) | |
3406 self.assertEqual(4, len(DoGet(_REMOTE, '/instances'))) | |
3407 | |
3408 # Reset | |
3409 for p in DoGet(_REMOTE, '/patients'): | |
3410 DoDelete(_REMOTE, '/patients/%s' % p) | |
3411 | |
3412 self.assertEqual(0, len(DoGet(_REMOTE, '/patients'))) | |
3413 | |
3414 | |
3415 # Upload all at once | |
3416 DoPost(_REMOTE, '/modalities/orthanctest/move', { 'Level' : 'Study', | |
3417 'Resources' : [ | |
3418 { | |
3419 'StudyInstanceUID' : '2.16.840.1.113669.632.20.121711.10000160881', | |
3420 }, | |
3421 { | |
3422 'StudyInstanceUID' : '2.16.840.1.113669.632.20.1211.10000357775', | |
3423 } | |
3424 ]}) | |
3425 self.assertEqual(2, len(DoGet(_REMOTE, '/patients'))) | |
3426 self.assertEqual(2, len(DoGet(_REMOTE, '/studies'))) | |
3427 self.assertEqual(3, len(DoGet(_REMOTE, '/series'))) | |
3428 self.assertEqual(4, len(DoGet(_REMOTE, '/instances'))) | |
3429 | |
86
0401ef51f5c1
test_reconstruct_json
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
83
diff
changeset
|
3430 |
0401ef51f5c1
test_reconstruct_json
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
83
diff
changeset
|
3431 |
0401ef51f5c1
test_reconstruct_json
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
83
diff
changeset
|
3432 def test_reconstruct_json(self): |
0401ef51f5c1
test_reconstruct_json
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
83
diff
changeset
|
3433 self.assertEqual(0, len(DoGet(_REMOTE, '/patients'))) |
0401ef51f5c1
test_reconstruct_json
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
83
diff
changeset
|
3434 |
0401ef51f5c1
test_reconstruct_json
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
83
diff
changeset
|
3435 instance = UploadInstance(_REMOTE, 'DummyCT.dcm')['ID'] |
0401ef51f5c1
test_reconstruct_json
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
83
diff
changeset
|
3436 first = DoGet(_REMOTE, '/instances/%s/tags' % instance) |
0401ef51f5c1
test_reconstruct_json
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
83
diff
changeset
|
3437 |
0401ef51f5c1
test_reconstruct_json
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
83
diff
changeset
|
3438 self.assertEqual('TWINOW', first['0008,1010']['Value']) |
380
b9adc7d06347
update tests following removal of dicom-as-json attachments
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
379
diff
changeset
|
3439 |
b9adc7d06347
update tests following removal of dicom-as-json attachments
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
379
diff
changeset
|
3440 if IsOrthancVersionAbove(_REMOTE, 1, 9, 1): |
b9adc7d06347
update tests following removal of dicom-as-json attachments
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
379
diff
changeset
|
3441 self.assertEqual(1, len(DoGet(_REMOTE, '/instances/%s/attachments' % instance))) |
b9adc7d06347
update tests following removal of dicom-as-json attachments
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
379
diff
changeset
|
3442 else: |
b9adc7d06347
update tests following removal of dicom-as-json attachments
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
379
diff
changeset
|
3443 self.assertEqual(2, len(DoGet(_REMOTE, '/instances/%s/attachments' % instance))) |
86
0401ef51f5c1
test_reconstruct_json
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
83
diff
changeset
|
3444 |
0401ef51f5c1
test_reconstruct_json
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
83
diff
changeset
|
3445 # Cannot delete the "DICOM" attachment |
0401ef51f5c1
test_reconstruct_json
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
83
diff
changeset
|
3446 self.assertRaises(Exception, lambda: DoDelete(_REMOTE, '/instances/%s/attachments/dicom' % instance)) |
0401ef51f5c1
test_reconstruct_json
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
83
diff
changeset
|
3447 |
0401ef51f5c1
test_reconstruct_json
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
83
diff
changeset
|
3448 # Can delete the "DICOM as JSON" attachment |
0401ef51f5c1
test_reconstruct_json
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
83
diff
changeset
|
3449 r = DoDelete(_REMOTE, '/instances/%s/attachments/dicom-as-json' % instance) |
0401ef51f5c1
test_reconstruct_json
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
83
diff
changeset
|
3450 self.assertTrue(type(r) is dict and len(r) == 0) |
0401ef51f5c1
test_reconstruct_json
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
83
diff
changeset
|
3451 |
0401ef51f5c1
test_reconstruct_json
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
83
diff
changeset
|
3452 # Only the "DICOM" attachment subsists |
0401ef51f5c1
test_reconstruct_json
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
83
diff
changeset
|
3453 self.assertEqual(1, len(DoGet(_REMOTE, '/instances/%s/attachments' % instance))) |
0401ef51f5c1
test_reconstruct_json
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
83
diff
changeset
|
3454 |
0401ef51f5c1
test_reconstruct_json
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
83
diff
changeset
|
3455 # Cannot manually reconstruct the "DICOM as JSON" attachment |
0401ef51f5c1
test_reconstruct_json
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
83
diff
changeset
|
3456 self.assertRaises(Exception, lambda: DoPut(_REMOTE, '/patients/%s/attachments/dicom-as-json' % patient, 'hello')) |
0401ef51f5c1
test_reconstruct_json
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
83
diff
changeset
|
3457 |
0401ef51f5c1
test_reconstruct_json
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
83
diff
changeset
|
3458 # Transparently reconstruct the "DICOM as JSON" attachment |
0401ef51f5c1
test_reconstruct_json
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
83
diff
changeset
|
3459 self.assertRaises(Exception, lambda: DoGet(_REMOTE, '/instances/%s/attachments/dicom-as-json' % instance)) |
0401ef51f5c1
test_reconstruct_json
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
83
diff
changeset
|
3460 second = DoGet(_REMOTE, '/instances/%s/tags' % instance) |
0401ef51f5c1
test_reconstruct_json
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
83
diff
changeset
|
3461 self.assertEqual(str(first), str(second)) |
380
b9adc7d06347
update tests following removal of dicom-as-json attachments
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
379
diff
changeset
|
3462 |
b9adc7d06347
update tests following removal of dicom-as-json attachments
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
379
diff
changeset
|
3463 if IsOrthancVersionAbove(_REMOTE, 1, 9, 1): |
b9adc7d06347
update tests following removal of dicom-as-json attachments
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
379
diff
changeset
|
3464 self.assertEqual(1, len(DoGet(_REMOTE, '/instances/%s/attachments' % instance))) |
b9adc7d06347
update tests following removal of dicom-as-json attachments
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
379
diff
changeset
|
3465 else: |
b9adc7d06347
update tests following removal of dicom-as-json attachments
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
379
diff
changeset
|
3466 self.assertEqual(2, len(DoGet(_REMOTE, '/instances/%s/attachments' % instance))) |
b9adc7d06347
update tests following removal of dicom-as-json attachments
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
379
diff
changeset
|
3467 third = DoGet(_REMOTE, '/instances/%s/attachments/dicom-as-json/data' % instance) |
b9adc7d06347
update tests following removal of dicom-as-json attachments
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
379
diff
changeset
|
3468 self.assertEqual(str(first), str(third)) |
87
4b24faec842b
test_reconstruct_json2 + test_private_tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
86
diff
changeset
|
3469 |
4b24faec842b
test_reconstruct_json2 + test_private_tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
86
diff
changeset
|
3470 |
4b24faec842b
test_reconstruct_json2 + test_private_tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
86
diff
changeset
|
3471 def test_reconstruct_json2(self): |
4b24faec842b
test_reconstruct_json2 + test_private_tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
86
diff
changeset
|
3472 self.assertEqual(0, len(DoGet(_REMOTE, '/patients'))) |
4b24faec842b
test_reconstruct_json2 + test_private_tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
86
diff
changeset
|
3473 |
4b24faec842b
test_reconstruct_json2 + test_private_tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
86
diff
changeset
|
3474 a = UploadInstance(_REMOTE, 'Brainix/Flair/IM-0001-0001.dcm')['ID'] |
4b24faec842b
test_reconstruct_json2 + test_private_tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
86
diff
changeset
|
3475 b = UploadInstance(_REMOTE, 'Knee/T2/IM-0001-0001.dcm')['ID'] |
4b24faec842b
test_reconstruct_json2 + test_private_tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
86
diff
changeset
|
3476 |
4b24faec842b
test_reconstruct_json2 + test_private_tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
86
diff
changeset
|
3477 self.assertEqual('BRAINIX', DoGet(_REMOTE, '/instances/%s/tags?simplify' % a)['PatientName']) |
4b24faec842b
test_reconstruct_json2 + test_private_tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
86
diff
changeset
|
3478 self.assertEqual('KNEE', DoGet(_REMOTE, '/instances/%s/tags?simplify' % b)['PatientName']) |
4b24faec842b
test_reconstruct_json2 + test_private_tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
86
diff
changeset
|
3479 |
380
b9adc7d06347
update tests following removal of dicom-as-json attachments
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
379
diff
changeset
|
3480 aa = DoGet(_REMOTE, '/instances/%s/attachments' % a) |
b9adc7d06347
update tests following removal of dicom-as-json attachments
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
379
diff
changeset
|
3481 bb = DoGet(_REMOTE, '/instances/%s/attachments' % b) |
b9adc7d06347
update tests following removal of dicom-as-json attachments
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
379
diff
changeset
|
3482 |
b9adc7d06347
update tests following removal of dicom-as-json attachments
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
379
diff
changeset
|
3483 if not IsOrthancVersionAbove(_REMOTE, 1, 9, 1): |
b9adc7d06347
update tests following removal of dicom-as-json attachments
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
379
diff
changeset
|
3484 self.assertEqual(2, len(aa)) |
b9adc7d06347
update tests following removal of dicom-as-json attachments
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
379
diff
changeset
|
3485 self.assertEqual(aa, bb) |
b9adc7d06347
update tests following removal of dicom-as-json attachments
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
379
diff
changeset
|
3486 self.assertTrue('dicom' in aa) |
b9adc7d06347
update tests following removal of dicom-as-json attachments
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
379
diff
changeset
|
3487 self.assertTrue('dicom-as-json' in aa) |
b9adc7d06347
update tests following removal of dicom-as-json attachments
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
379
diff
changeset
|
3488 elif IsDicomUntilPixelDataStored(_REMOTE): |
b9adc7d06347
update tests following removal of dicom-as-json attachments
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
379
diff
changeset
|
3489 self.assertEqual(2, len(aa)) |
b9adc7d06347
update tests following removal of dicom-as-json attachments
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
379
diff
changeset
|
3490 self.assertEqual(aa, bb) |
b9adc7d06347
update tests following removal of dicom-as-json attachments
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
379
diff
changeset
|
3491 self.assertTrue('dicom' in aa) |
b9adc7d06347
update tests following removal of dicom-as-json attachments
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
379
diff
changeset
|
3492 self.assertTrue('dicom-until-pixel-data' in aa) |
b9adc7d06347
update tests following removal of dicom-as-json attachments
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
379
diff
changeset
|
3493 else: |
b9adc7d06347
update tests following removal of dicom-as-json attachments
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
379
diff
changeset
|
3494 self.assertEqual(1, len(aa)) |
b9adc7d06347
update tests following removal of dicom-as-json attachments
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
379
diff
changeset
|
3495 self.assertEqual(aa, bb) |
b9adc7d06347
update tests following removal of dicom-as-json attachments
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
379
diff
changeset
|
3496 self.assertTrue('dicom' in aa) |
b9adc7d06347
update tests following removal of dicom-as-json attachments
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
379
diff
changeset
|
3497 |
b9adc7d06347
update tests following removal of dicom-as-json attachments
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
379
diff
changeset
|
3498 # In Orthanc <= 1.9.0, this call deletes "dicom-as-json" |
87
4b24faec842b
test_reconstruct_json2 + test_private_tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
86
diff
changeset
|
3499 DoPost(_REMOTE, '/tools/invalidate-tags', '', 'text/plain') |
4b24faec842b
test_reconstruct_json2 + test_private_tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
86
diff
changeset
|
3500 |
380
b9adc7d06347
update tests following removal of dicom-as-json attachments
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
379
diff
changeset
|
3501 if IsOrthancVersionAbove(_REMOTE, 1, 9, 1) and IsDicomUntilPixelDataStored(_REMOTE): |
b9adc7d06347
update tests following removal of dicom-as-json attachments
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
changeset
|
3502 self.assertEqual(2, len(DoGet(_REMOTE, '/instances/%s/attachments' % a))) |
b9adc7d06347
update tests following removal of dicom-as-json attachments
Sebastien Jodogne <s.jodogne@gmail.com>
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diff
changeset
|
3503 self.assertEqual(2, len(DoGet(_REMOTE, '/instances/%s/attachments' % b))) |
b9adc7d06347
update tests following removal of dicom-as-json attachments
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
changeset
|
3504 else: |
b9adc7d06347
update tests following removal of dicom-as-json attachments
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
379
diff
changeset
|
3505 self.assertEqual(1, len(DoGet(_REMOTE, '/instances/%s/attachments' % a))) |
b9adc7d06347
update tests following removal of dicom-as-json attachments
Sebastien Jodogne <s.jodogne@gmail.com>
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diff
changeset
|
3506 self.assertEqual(1, len(DoGet(_REMOTE, '/instances/%s/attachments' % b))) |
b9adc7d06347
update tests following removal of dicom-as-json attachments
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
changeset
|
3507 |
b9adc7d06347
update tests following removal of dicom-as-json attachments
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
379
diff
changeset
|
3508 # In Orthanc <= 1.9.0, this call reconstructs "dicom-as-json" |
87
4b24faec842b
test_reconstruct_json2 + test_private_tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
86
diff
changeset
|
3509 self.assertEqual('BRAINIX', DoGet(_REMOTE, '/instances/%s/tags?simplify' % a)['PatientName']) |
4b24faec842b
test_reconstruct_json2 + test_private_tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
86
diff
changeset
|
3510 self.assertEqual('KNEE', DoGet(_REMOTE, '/instances/%s/tags?simplify' % b)['PatientName']) |
4b24faec842b
test_reconstruct_json2 + test_private_tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
86
diff
changeset
|
3511 |
380
b9adc7d06347
update tests following removal of dicom-as-json attachments
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
379
diff
changeset
|
3512 if IsOrthancVersionAbove(_REMOTE, 1, 9, 1) and not IsDicomUntilPixelDataStored(_REMOTE): |
b9adc7d06347
update tests following removal of dicom-as-json attachments
Sebastien Jodogne <s.jodogne@gmail.com>
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changeset
|
3513 self.assertEqual(1, len(DoGet(_REMOTE, '/instances/%s/attachments' % a))) |
b9adc7d06347
update tests following removal of dicom-as-json attachments
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
379
diff
changeset
|
3514 self.assertEqual(1, len(DoGet(_REMOTE, '/instances/%s/attachments' % b))) |
b9adc7d06347
update tests following removal of dicom-as-json attachments
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
379
diff
changeset
|
3515 else: |
b9adc7d06347
update tests following removal of dicom-as-json attachments
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
379
diff
changeset
|
3516 self.assertEqual(2, len(DoGet(_REMOTE, '/instances/%s/attachments' % a))) |
b9adc7d06347
update tests following removal of dicom-as-json attachments
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
379
diff
changeset
|
3517 self.assertEqual(2, len(DoGet(_REMOTE, '/instances/%s/attachments' % b))) |
87
4b24faec842b
test_reconstruct_json2 + test_private_tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
86
diff
changeset
|
3518 |
4b24faec842b
test_reconstruct_json2 + test_private_tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
86
diff
changeset
|
3519 |
4b24faec842b
test_reconstruct_json2 + test_private_tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
86
diff
changeset
|
3520 def test_private_tags(self): |
4b24faec842b
test_reconstruct_json2 + test_private_tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
86
diff
changeset
|
3521 i = UploadInstance(_REMOTE, 'PrivateMDNTags.dcm')['ID'] |
4b24faec842b
test_reconstruct_json2 + test_private_tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
86
diff
changeset
|
3522 t = DoGet(_REMOTE, '/instances/%s/tags?simplify' % i) |
4b24faec842b
test_reconstruct_json2 + test_private_tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
86
diff
changeset
|
3523 self.assertEqual('1.2.840.113704.1.111.6320.1342451261.21', t['PET-CT Multi Modality Name']) |
4b24faec842b
test_reconstruct_json2 + test_private_tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
86
diff
changeset
|
3524 self.assertEqual('p37s0_na_ctac.img', t['Original Image Filename']) |
4b24faec842b
test_reconstruct_json2 + test_private_tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
86
diff
changeset
|
3525 |
92
dbcbffb889da
test_findscu_encoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
89
diff
changeset
|
3526 |
dbcbffb889da
test_findscu_encoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
89
diff
changeset
|
3527 def test_findscu_encoding(self): |
dbcbffb889da
test_findscu_encoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
89
diff
changeset
|
3528 # Check out ../Database/Encodings/Generate.sh |
dbcbffb889da
test_findscu_encoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
89
diff
changeset
|
3529 TEST = u'Test-éüäöòДΘĝדصķћ๛ネİ' |
dbcbffb889da
test_findscu_encoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
89
diff
changeset
|
3530 ENCODINGS = { |
dbcbffb889da
test_findscu_encoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
89
diff
changeset
|
3531 'Arabic' : [ 'ISO_IR 127' ], |
dbcbffb889da
test_findscu_encoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
89
diff
changeset
|
3532 'Ascii' : [ 'ISO_IR 6' ], # More accurately, ISO 646 |
dbcbffb889da
test_findscu_encoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
89
diff
changeset
|
3533 'Cyrillic' : [ 'ISO_IR 144' ], |
dbcbffb889da
test_findscu_encoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
89
diff
changeset
|
3534 'Greek' : [ 'ISO_IR 126' ], |
dbcbffb889da
test_findscu_encoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
89
diff
changeset
|
3535 'Hebrew' : [ 'ISO_IR 138' ], |
dbcbffb889da
test_findscu_encoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
89
diff
changeset
|
3536 'Japanese' : [ 'ISO_IR 13', 'shift-jis' ], |
dbcbffb889da
test_findscu_encoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
89
diff
changeset
|
3537 'Latin1' : [ 'ISO_IR 100' ], |
dbcbffb889da
test_findscu_encoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
89
diff
changeset
|
3538 'Latin2' : [ 'ISO_IR 101' ], |
dbcbffb889da
test_findscu_encoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
89
diff
changeset
|
3539 'Latin3' : [ 'ISO_IR 109' ], |
dbcbffb889da
test_findscu_encoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
89
diff
changeset
|
3540 'Latin4' : [ 'ISO_IR 110' ], |
dbcbffb889da
test_findscu_encoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
89
diff
changeset
|
3541 'Latin5' : [ 'ISO_IR 148' ], |
dbcbffb889da
test_findscu_encoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
89
diff
changeset
|
3542 'Thai' : [ 'ISO_IR 166', 'tis-620' ], |
dbcbffb889da
test_findscu_encoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
89
diff
changeset
|
3543 'Utf8' : [ 'ISO_IR 192' ], |
dbcbffb889da
test_findscu_encoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
89
diff
changeset
|
3544 } |
dbcbffb889da
test_findscu_encoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
89
diff
changeset
|
3545 |
dbcbffb889da
test_findscu_encoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
89
diff
changeset
|
3546 for name in ENCODINGS.iterkeys(): |
dbcbffb889da
test_findscu_encoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
89
diff
changeset
|
3547 if len(ENCODINGS[name]) == 1: |
dbcbffb889da
test_findscu_encoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
89
diff
changeset
|
3548 ENCODINGS[name].append(name.lower()) |
dbcbffb889da
test_findscu_encoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
89
diff
changeset
|
3549 |
dbcbffb889da
test_findscu_encoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
89
diff
changeset
|
3550 UploadInstance(_REMOTE, 'Encodings/Lena-utf8.dcm') |
dbcbffb889da
test_findscu_encoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
89
diff
changeset
|
3551 |
dbcbffb889da
test_findscu_encoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
89
diff
changeset
|
3552 for name in ENCODINGS.iterkeys(): |
dbcbffb889da
test_findscu_encoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
89
diff
changeset
|
3553 self.assertEqual(name, DoPut(_REMOTE, '/tools/default-encoding', name)) |
dbcbffb889da
test_findscu_encoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
89
diff
changeset
|
3554 self.assertEqual(name, DoGet(_REMOTE, '/tools/default-encoding')) |
dbcbffb889da
test_findscu_encoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
89
diff
changeset
|
3555 |
dbcbffb889da
test_findscu_encoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
89
diff
changeset
|
3556 i = CallFindScu([ '-k', '0008,0052=STUDY', |
dbcbffb889da
test_findscu_encoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
89
diff
changeset
|
3557 '-k', 'SpecificCharacterSet', |
dbcbffb889da
test_findscu_encoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
89
diff
changeset
|
3558 '-k', 'PatientName' ]) |
dbcbffb889da
test_findscu_encoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
89
diff
changeset
|
3559 |
dbcbffb889da
test_findscu_encoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
89
diff
changeset
|
3560 characterSet = re.findall('\(0008,0005\).*?\[(.*?)\]', i) |
dbcbffb889da
test_findscu_encoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
89
diff
changeset
|
3561 self.assertEqual(1, len(characterSet)) |
dbcbffb889da
test_findscu_encoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
89
diff
changeset
|
3562 self.assertEqual(ENCODINGS[name][0], characterSet[0].strip()) |
dbcbffb889da
test_findscu_encoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
89
diff
changeset
|
3563 |
dbcbffb889da
test_findscu_encoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
89
diff
changeset
|
3564 patientName = re.findall('\(0010,0010\).*?\[(.*?)\]', i) |
dbcbffb889da
test_findscu_encoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
89
diff
changeset
|
3565 self.assertEqual(1, len(patientName)) |
dbcbffb889da
test_findscu_encoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
89
diff
changeset
|
3566 |
dbcbffb889da
test_findscu_encoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
89
diff
changeset
|
3567 expected = TEST.encode(ENCODINGS[name][1], 'ignore') |
dbcbffb889da
test_findscu_encoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
89
diff
changeset
|
3568 self.assertEqual(expected, patientName[0].strip()) |
dbcbffb889da
test_findscu_encoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
89
diff
changeset
|
3569 |
dbcbffb889da
test_findscu_encoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
89
diff
changeset
|
3570 |
dbcbffb889da
test_findscu_encoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
89
diff
changeset
|
3571 #for master in ENCODINGS: |
dbcbffb889da
test_findscu_encoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
89
diff
changeset
|
3572 for master in [ 'Latin1', 'Utf8', 'Cyrillic' ]: # Shortcut to speedup tests |
dbcbffb889da
test_findscu_encoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
89
diff
changeset
|
3573 self.assertEqual(master, DoPut(_REMOTE, '/tools/default-encoding', master)) |
dbcbffb889da
test_findscu_encoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
89
diff
changeset
|
3574 self.assertEqual(master, DoGet(_REMOTE, '/tools/default-encoding')) |
dbcbffb889da
test_findscu_encoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
89
diff
changeset
|
3575 |
dbcbffb889da
test_findscu_encoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
89
diff
changeset
|
3576 for name in ENCODINGS: |
dbcbffb889da
test_findscu_encoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
89
diff
changeset
|
3577 DropOrthanc(_REMOTE) |
dbcbffb889da
test_findscu_encoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
89
diff
changeset
|
3578 UploadInstance(_REMOTE, 'Encodings/Lena-%s.dcm' % ENCODINGS[name][1]) |
dbcbffb889da
test_findscu_encoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
89
diff
changeset
|
3579 |
dbcbffb889da
test_findscu_encoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
89
diff
changeset
|
3580 i = CallFindScu([ '-k', '0008,0052=STUDY', |
dbcbffb889da
test_findscu_encoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
89
diff
changeset
|
3581 '-k', 'PatientID', |
dbcbffb889da
test_findscu_encoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
89
diff
changeset
|
3582 '-k', 'SpecificCharacterSet', |
dbcbffb889da
test_findscu_encoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
89
diff
changeset
|
3583 '-k', 'PatientName' ]) |
dbcbffb889da
test_findscu_encoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
89
diff
changeset
|
3584 i = i.decode(ENCODINGS[master][1]) |
dbcbffb889da
test_findscu_encoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
89
diff
changeset
|
3585 |
dbcbffb889da
test_findscu_encoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
89
diff
changeset
|
3586 characterSet = re.findall('\(0008,0005\).*?\[(.*?)\]', i) |
dbcbffb889da
test_findscu_encoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
89
diff
changeset
|
3587 self.assertEqual(1, len(characterSet)) |
dbcbffb889da
test_findscu_encoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
89
diff
changeset
|
3588 self.assertEqual(ENCODINGS[master][0], characterSet[0].strip()) |
dbcbffb889da
test_findscu_encoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
89
diff
changeset
|
3589 |
dbcbffb889da
test_findscu_encoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
89
diff
changeset
|
3590 patientId = re.findall('\(0010,0020\).*?\[(.*?)\]', i) |
dbcbffb889da
test_findscu_encoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
89
diff
changeset
|
3591 self.assertEqual(1, len(patientId)) |
dbcbffb889da
test_findscu_encoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
89
diff
changeset
|
3592 self.assertEqual(ENCODINGS[name][1], patientId[0].strip()) |
dbcbffb889da
test_findscu_encoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
89
diff
changeset
|
3593 |
dbcbffb889da
test_findscu_encoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
89
diff
changeset
|
3594 patientName = re.findall('\(0010,0010\).*?\[(.*?)\]', i) |
dbcbffb889da
test_findscu_encoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
89
diff
changeset
|
3595 self.assertEqual(1, len(patientName)) |
dbcbffb889da
test_findscu_encoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
89
diff
changeset
|
3596 |
dbcbffb889da
test_findscu_encoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
89
diff
changeset
|
3597 tmp = ENCODINGS[name][1] |
dbcbffb889da
test_findscu_encoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
89
diff
changeset
|
3598 expected = TEST.encode(tmp, 'ignore').decode(tmp) |
dbcbffb889da
test_findscu_encoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
89
diff
changeset
|
3599 tmp = ENCODINGS[master][1] |
dbcbffb889da
test_findscu_encoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
89
diff
changeset
|
3600 expected = expected.encode(tmp, 'ignore').decode(tmp) |
dbcbffb889da
test_findscu_encoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
89
diff
changeset
|
3601 |
dbcbffb889da
test_findscu_encoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
89
diff
changeset
|
3602 self.assertEqual(expected, patientName[0].strip()) |
dbcbffb889da
test_findscu_encoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
89
diff
changeset
|
3603 |
dbcbffb889da
test_findscu_encoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
89
diff
changeset
|
3604 |
dbcbffb889da
test_findscu_encoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
89
diff
changeset
|
3605 a = DoPost(_REMOTE, '/tools/find', { 'Expand' : True, |
dbcbffb889da
test_findscu_encoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
89
diff
changeset
|
3606 'Level' : 'Study', |
dbcbffb889da
test_findscu_encoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
89
diff
changeset
|
3607 'Query' : { }}) |
dbcbffb889da
test_findscu_encoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
89
diff
changeset
|
3608 self.assertEqual(1, len(a)) |
dbcbffb889da
test_findscu_encoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
89
diff
changeset
|
3609 |
dbcbffb889da
test_findscu_encoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
89
diff
changeset
|
3610 tmp = ENCODINGS[name][1] |
dbcbffb889da
test_findscu_encoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
89
diff
changeset
|
3611 self.assertEqual(TEST.encode(tmp, 'ignore').decode(tmp), a[0]["PatientMainDicomTags"]["PatientName"]) |
96
272d1229cb49
test reconstruction of tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
95
diff
changeset
|
3612 |
314 | 3613 # Back to UTF-8 |
3614 self.assertEqual('Utf8', DoPut(_REMOTE, '/tools/default-encoding', 'Utf8')) | |
3615 | |
96
272d1229cb49
test reconstruction of tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
95
diff
changeset
|
3616 |
272d1229cb49
test reconstruction of tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
95
diff
changeset
|
3617 def test_reconstruct(self): |
272d1229cb49
test reconstruction of tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
95
diff
changeset
|
3618 def CompareMainDicomTag(expected, instance, level, tag): |
272d1229cb49
test reconstruction of tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
95
diff
changeset
|
3619 self.assertEqual(expected, DoGet(_REMOTE, '/instances/%s/%s' % (instance, level))['MainDicomTags'][tag].strip()) |
272d1229cb49
test reconstruction of tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
95
diff
changeset
|
3620 |
272d1229cb49
test reconstruction of tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
95
diff
changeset
|
3621 a = UploadInstance(_REMOTE, 'DummyCT.dcm')['ID'] |
272d1229cb49
test reconstruction of tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
95
diff
changeset
|
3622 |
272d1229cb49
test reconstruction of tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
95
diff
changeset
|
3623 studies = DoGet(_REMOTE, '/studies/') |
272d1229cb49
test reconstruction of tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
95
diff
changeset
|
3624 self.assertEqual(1, len(DoGet(_REMOTE, '/patients/'))) |
272d1229cb49
test reconstruction of tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
95
diff
changeset
|
3625 self.assertEqual(1, len(studies)) |
272d1229cb49
test reconstruction of tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
95
diff
changeset
|
3626 self.assertEqual(1, len(DoGet(_REMOTE, '/series/'))) |
272d1229cb49
test reconstruction of tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
95
diff
changeset
|
3627 self.assertEqual(1, len(DoGet(_REMOTE, '/instances/'))) |
272d1229cb49
test reconstruction of tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
95
diff
changeset
|
3628 |
272d1229cb49
test reconstruction of tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
95
diff
changeset
|
3629 modified = DoPost(_REMOTE, '/studies/%s/modify' % studies[0], { |
272d1229cb49
test reconstruction of tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
95
diff
changeset
|
3630 "Replace" : { |
272d1229cb49
test reconstruction of tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
95
diff
changeset
|
3631 "StudyDescription" : "hello", |
272d1229cb49
test reconstruction of tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
95
diff
changeset
|
3632 "SeriesDescription" : "world", |
272d1229cb49
test reconstruction of tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
95
diff
changeset
|
3633 "SOPClassUID" : "test", |
272d1229cb49
test reconstruction of tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
95
diff
changeset
|
3634 "SOPInstanceUID" : "myid", |
272d1229cb49
test reconstruction of tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
95
diff
changeset
|
3635 }, |
119 | 3636 "Keep" : [ "StudyInstanceUID", "SeriesInstanceUID" ], |
3637 "Force" : True | |
96
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test reconstruction of tags
Sebastien Jodogne <s.jodogne@gmail.com>
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95
diff
changeset
|
3638 }) |
272d1229cb49
test reconstruction of tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
95
diff
changeset
|
3639 |
272d1229cb49
test reconstruction of tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
95
diff
changeset
|
3640 instances = DoGet(_REMOTE, '/instances/') |
272d1229cb49
test reconstruction of tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
95
diff
changeset
|
3641 self.assertEqual(1, len(DoGet(_REMOTE, '/patients/'))) |
272d1229cb49
test reconstruction of tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
95
diff
changeset
|
3642 self.assertEqual(1, len(DoGet(_REMOTE, '/studies/'))) |
272d1229cb49
test reconstruction of tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
95
diff
changeset
|
3643 self.assertEqual(1, len(DoGet(_REMOTE, '/series/'))) |
272d1229cb49
test reconstruction of tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
95
diff
changeset
|
3644 self.assertEqual(2, len(instances)) |
272d1229cb49
test reconstruction of tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
95
diff
changeset
|
3645 |
272d1229cb49
test reconstruction of tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
95
diff
changeset
|
3646 b = instances[0] if instances[1] == a else instances[1] |
272d1229cb49
test reconstruction of tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
95
diff
changeset
|
3647 |
272d1229cb49
test reconstruction of tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
95
diff
changeset
|
3648 CompareMainDicomTag('Knee (R)', a, 'study', 'StudyDescription') |
272d1229cb49
test reconstruction of tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
95
diff
changeset
|
3649 CompareMainDicomTag('AX. FSE PD', a, 'series', 'SeriesDescription') |
272d1229cb49
test reconstruction of tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
95
diff
changeset
|
3650 CompareMainDicomTag('1.2.840.113619.2.176.2025.1499492.7040.1171286242.109', a, '', 'SOPInstanceUID') |
272d1229cb49
test reconstruction of tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
95
diff
changeset
|
3651 CompareMainDicomTag('myid', b, '', 'SOPInstanceUID') |
272d1229cb49
test reconstruction of tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
95
diff
changeset
|
3652 self.assertEqual('1.2.840.10008.5.1.4.1.1.4', DoGet(_REMOTE, '/instances/%s/metadata/SopClassUid' % a).strip()) |
272d1229cb49
test reconstruction of tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
95
diff
changeset
|
3653 self.assertEqual('test', DoGet(_REMOTE, '/instances/%s/metadata/SopClassUid' % b).strip()) |
272d1229cb49
test reconstruction of tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
95
diff
changeset
|
3654 |
272d1229cb49
test reconstruction of tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
95
diff
changeset
|
3655 DoPost(_REMOTE, '/instances/%s/reconstruct' % b, {}) |
272d1229cb49
test reconstruction of tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
95
diff
changeset
|
3656 |
272d1229cb49
test reconstruction of tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
95
diff
changeset
|
3657 CompareMainDicomTag('hello', a, 'study', 'StudyDescription') |
272d1229cb49
test reconstruction of tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
95
diff
changeset
|
3658 CompareMainDicomTag('world', a, 'series', 'SeriesDescription') |
272d1229cb49
test reconstruction of tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
95
diff
changeset
|
3659 CompareMainDicomTag('1.2.840.113619.2.176.2025.1499492.7040.1171286242.109', a, '', 'SOPInstanceUID') |
102 | 3660 |
104 | 3661 def test_httpClient_lua(self): |
3662 with open(GetDatabasePath('Lua/HttpClient.lua'), 'r') as f: | |
102 | 3663 result = DoPost(_REMOTE, '/tools/execute-script', f.read(), 'application/lua') |
3664 | |
3665 self.assertIn('OK', result) | |
107
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test_bitbucket_issue_44
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parents:
104
diff
changeset
|
3666 |
fddb35f7289d
test_bitbucket_issue_44
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
104
diff
changeset
|
3667 |
fddb35f7289d
test_bitbucket_issue_44
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parents:
104
diff
changeset
|
3668 def test_bitbucket_issue_44(self): |
319 | 3669 # https://bugs.orthanc-server.com/show_bug.cgi?id=44 |
107
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104
diff
changeset
|
3670 UploadInstance(_REMOTE, 'Issue44/Monochrome1.dcm') |
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test_bitbucket_issue_44
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104
diff
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|
3671 UploadInstance(_REMOTE, 'Issue44/Monochrome2.dcm') |
fddb35f7289d
test_bitbucket_issue_44
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parents:
104
diff
changeset
|
3672 |
fddb35f7289d
test_bitbucket_issue_44
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parents:
104
diff
changeset
|
3673 # dcmcjpeg +ua +eb Monochrome1.dcm Monochrome1-Jpeg.dcm |
fddb35f7289d
test_bitbucket_issue_44
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104
diff
changeset
|
3674 UploadInstance(_REMOTE, 'Issue44/Monochrome1-Jpeg.dcm') |
fddb35f7289d
test_bitbucket_issue_44
Sebastien Jodogne <s.jodogne@gmail.com>
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104
diff
changeset
|
3675 |
fddb35f7289d
test_bitbucket_issue_44
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parents:
104
diff
changeset
|
3676 # dcmcjpeg +ua Monochrome1.dcm Monochrome1-JpegLS.dcm |
fddb35f7289d
test_bitbucket_issue_44
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diff
changeset
|
3677 UploadInstance(_REMOTE, 'Issue44/Monochrome1-JpegLS.dcm') |
fddb35f7289d
test_bitbucket_issue_44
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104
diff
changeset
|
3678 |
fddb35f7289d
test_bitbucket_issue_44
Sebastien Jodogne <s.jodogne@gmail.com>
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104
diff
changeset
|
3679 monochrome1 = 'bcdd600a-a6a9c522-5f0a6e84-8657c9f3-b76e59b7' |
fddb35f7289d
test_bitbucket_issue_44
Sebastien Jodogne <s.jodogne@gmail.com>
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104
diff
changeset
|
3680 monochrome1_jpeg = '9df82121-208a2da8-0038674a-3d7a773b-b7008cd2' |
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test_bitbucket_issue_44
Sebastien Jodogne <s.jodogne@gmail.com>
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104
diff
changeset
|
3681 monochrome1_jpegls = '0486d1a2-9165573f-b1976b20-e927b016-6b8d67ab' |
fddb35f7289d
test_bitbucket_issue_44
Sebastien Jodogne <s.jodogne@gmail.com>
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104
diff
changeset
|
3682 monochrome2 = 'f00947b7-f61f7164-c93414d1-c6fbda6a-9e92ed20' |
fddb35f7289d
test_bitbucket_issue_44
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
104
diff
changeset
|
3683 |
fddb35f7289d
test_bitbucket_issue_44
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
104
diff
changeset
|
3684 for i in [ monochrome1, monochrome1_jpeg, monochrome1_jpegls ]: |
fddb35f7289d
test_bitbucket_issue_44
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
104
diff
changeset
|
3685 im = GetImage(_REMOTE, '/instances/%s/preview' % i) |
fddb35f7289d
test_bitbucket_issue_44
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104
diff
changeset
|
3686 self.assertEqual("L", im.mode) |
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test_bitbucket_issue_44
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parents:
104
diff
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|
3687 self.assertEqual(2010, im.size[0]) |
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test_bitbucket_issue_44
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parents:
104
diff
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|
3688 self.assertEqual(2446, im.size[1]) |
fddb35f7289d
test_bitbucket_issue_44
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
104
diff
changeset
|
3689 |
fddb35f7289d
test_bitbucket_issue_44
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
104
diff
changeset
|
3690 # This is the chest image, with MONOCHROME1. Raw background is |
fddb35f7289d
test_bitbucket_issue_44
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104
diff
changeset
|
3691 # white (255), should be rendered as black (0) => invert |
fddb35f7289d
test_bitbucket_issue_44
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parents:
104
diff
changeset
|
3692 if i == monochrome1_jpeg: |
fddb35f7289d
test_bitbucket_issue_44
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parents:
104
diff
changeset
|
3693 # Add some tolerance because of JPEG destructive compression |
fddb35f7289d
test_bitbucket_issue_44
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parents:
104
diff
changeset
|
3694 self.assertGreater(10, im.getpixel((0,0))) |
fddb35f7289d
test_bitbucket_issue_44
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parents:
104
diff
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|
3695 else: |
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test_bitbucket_issue_44
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parents:
104
diff
changeset
|
3696 self.assertEqual(0, im.getpixel((0,0))) |
fddb35f7289d
test_bitbucket_issue_44
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
104
diff
changeset
|
3697 |
fddb35f7289d
test_bitbucket_issue_44
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
104
diff
changeset
|
3698 im = GetImage(_REMOTE, '/instances/%s/preview' % monochrome2) |
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test_bitbucket_issue_44
Sebastien Jodogne <s.jodogne@gmail.com>
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104
diff
changeset
|
3699 self.assertEqual("L", im.mode) |
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test_bitbucket_issue_44
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parents:
104
diff
changeset
|
3700 self.assertEqual(1572, im.size[0]) |
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test_bitbucket_issue_44
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parents:
104
diff
changeset
|
3701 self.assertEqual(2010, im.size[1]) |
fddb35f7289d
test_bitbucket_issue_44
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
104
diff
changeset
|
3702 |
fddb35f7289d
test_bitbucket_issue_44
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
104
diff
changeset
|
3703 # This is the key image, with MONOCHROME2. Raw background is |
fddb35f7289d
test_bitbucket_issue_44
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
104
diff
changeset
|
3704 # white (255), should be rendered as white (255) |
fddb35f7289d
test_bitbucket_issue_44
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
104
diff
changeset
|
3705 self.assertEqual(255, im.getpixel((0,0))) |
111
7005cdeeb704
test_bitbucket_issue_42
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
107
diff
changeset
|
3706 |
7005cdeeb704
test_bitbucket_issue_42
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
107
diff
changeset
|
3707 |
7005cdeeb704
test_bitbucket_issue_42
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
107
diff
changeset
|
3708 def test_bitbucket_issue_42(self): |
319 | 3709 # https://bugs.orthanc-server.com/show_bug.cgi?id=42 |
123 | 3710 # This test fails on DCMTK 3.6.0, but succeeds in DCMTK 3.6.1 snapshots and DCMTK 3.6.2 |
111
7005cdeeb704
test_bitbucket_issue_42
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107
diff
changeset
|
3711 UploadInstance(_REMOTE, 'Issue42.dcm')['ID'] |
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107
diff
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|
3712 modified = DoPost(_REMOTE, |
7005cdeeb704
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107
diff
changeset
|
3713 '/patients/da128605-e040d0c4-310615d2-3475da63-df2d1ef4/modify', |
119 | 3714 '{"Replace":{"PatientID":"Hello","PatientName":"Sample patient name"},"Force":true}', |
111
7005cdeeb704
test_bitbucket_issue_42
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107
diff
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|
3715 'application/json') |
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107
diff
changeset
|
3716 self.assertTrue('PatientID' in modified) |
113
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diff
changeset
|
3717 |
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112
diff
changeset
|
3718 |
3e5934363e76
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parents:
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diff
changeset
|
3719 def test_rest_find_limit(self): |
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parents:
112
diff
changeset
|
3720 # Check the "Since" and "Limit" parameters in URI "/tools/find" |
319 | 3721 # Related to issue 53: https://bugs.orthanc-server.com/show_bug.cgi?id=53 |
111
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diff
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|
3722 |
113
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diff
changeset
|
3723 # Upload 6 instances |
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diff
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|
3724 brainix = [] |
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diff
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|
3725 knee = [] |
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diff
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|
3726 for i in range(2): |
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diff
changeset
|
3727 brainix.append(UploadInstance(_REMOTE, 'Brainix/Flair/IM-0001-000%d.dcm' % (i + 1)) ['ID']) |
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diff
changeset
|
3728 brainix.append(UploadInstance(_REMOTE, 'Brainix/Epi/IM-0001-000%d.dcm' % (i + 1)) ['ID']) |
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diff
changeset
|
3729 knee.append(UploadInstance(_REMOTE, 'Knee/T1/IM-0001-000%d.dcm' % (i + 1)) ['ID']) |
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diff
changeset
|
3730 |
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diff
changeset
|
3731 # Check using BRAINIX |
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diff
changeset
|
3732 a = DoPost(_REMOTE, '/tools/find', { 'Level' : 'Instance', |
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diff
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|
3733 'Query' : { 'PatientName' : 'B*' }, |
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diff
changeset
|
3734 'Limit' : 10 }) |
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diff
changeset
|
3735 self.assertEqual(4, len(a)) |
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diff
changeset
|
3736 |
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diff
changeset
|
3737 a = DoPost(_REMOTE, '/tools/find', { 'Level' : 'Instance', |
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diff
changeset
|
3738 'Query' : { 'PatientName' : 'B*' }, |
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diff
changeset
|
3739 'Limit' : 4 }) |
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diff
changeset
|
3740 self.assertEqual(4, len(a)) |
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diff
changeset
|
3741 |
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diff
changeset
|
3742 a = DoPost(_REMOTE, '/tools/find', { 'Level' : 'Instance', |
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parents:
112
diff
changeset
|
3743 'Query' : { 'PatientName' : 'B*' }, |
3e5934363e76
test_rest_find_limitµ
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parents:
112
diff
changeset
|
3744 'Since' : 2, |
3e5934363e76
test_rest_find_limitµ
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
112
diff
changeset
|
3745 'Limit' : 4 }) |
3e5934363e76
test_rest_find_limitµ
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parents:
112
diff
changeset
|
3746 self.assertEqual(2, len(a)) |
3e5934363e76
test_rest_find_limitµ
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
112
diff
changeset
|
3747 |
3e5934363e76
test_rest_find_limitµ
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parents:
112
diff
changeset
|
3748 a = DoPost(_REMOTE, '/tools/find', { 'Level' : 'Instance', |
3e5934363e76
test_rest_find_limitµ
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
112
diff
changeset
|
3749 'Query' : { 'PatientName' : 'B*' }, |
3e5934363e76
test_rest_find_limitµ
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
112
diff
changeset
|
3750 'Limit' : 3 }) |
3e5934363e76
test_rest_find_limitµ
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parents:
112
diff
changeset
|
3751 self.assertEqual(3, len(a)) |
3e5934363e76
test_rest_find_limitµ
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
112
diff
changeset
|
3752 |
3e5934363e76
test_rest_find_limitµ
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
112
diff
changeset
|
3753 b = [] |
3e5934363e76
test_rest_find_limitµ
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
112
diff
changeset
|
3754 for i in range(4): |
3e5934363e76
test_rest_find_limitµ
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parents:
112
diff
changeset
|
3755 a = DoPost(_REMOTE, '/tools/find', { 'Level' : 'Instance', |
3e5934363e76
test_rest_find_limitµ
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
112
diff
changeset
|
3756 'Query' : { 'PatientName' : 'B*' }, |
3e5934363e76
test_rest_find_limitµ
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
112
diff
changeset
|
3757 'Limit' : 1, |
3e5934363e76
test_rest_find_limitµ
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
112
diff
changeset
|
3758 'Since' : i }) |
3e5934363e76
test_rest_find_limitµ
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
112
diff
changeset
|
3759 self.assertEqual(1, len(a)) |
3e5934363e76
test_rest_find_limitµ
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
112
diff
changeset
|
3760 b.append(a[0]) |
3e5934363e76
test_rest_find_limitµ
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
112
diff
changeset
|
3761 |
3e5934363e76
test_rest_find_limitµ
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parents:
112
diff
changeset
|
3762 # Check whether the two sets are equal through symmetric difference |
3e5934363e76
test_rest_find_limitµ
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parents:
112
diff
changeset
|
3763 self.assertEqual(0, len(set(b) ^ set(brainix))) |
3e5934363e76
test_rest_find_limitµ
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
112
diff
changeset
|
3764 |
3e5934363e76
test_rest_find_limitµ
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
112
diff
changeset
|
3765 # Check using KNEE |
3e5934363e76
test_rest_find_limitµ
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parents:
112
diff
changeset
|
3766 a = DoPost(_REMOTE, '/tools/find', { 'Level' : 'Instance', |
3e5934363e76
test_rest_find_limitµ
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
112
diff
changeset
|
3767 'Query' : { 'PatientName' : 'K*' }, |
3e5934363e76
test_rest_find_limitµ
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
112
diff
changeset
|
3768 'Limit' : 10 }) |
3e5934363e76
test_rest_find_limitµ
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
112
diff
changeset
|
3769 self.assertEqual(2, len(a)) |
3e5934363e76
test_rest_find_limitµ
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
112
diff
changeset
|
3770 |
3e5934363e76
test_rest_find_limitµ
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
112
diff
changeset
|
3771 a = DoPost(_REMOTE, '/tools/find', { 'Level' : 'Instance', |
3e5934363e76
test_rest_find_limitµ
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
112
diff
changeset
|
3772 'Query' : { 'PatientName' : 'K*' }, |
3e5934363e76
test_rest_find_limitµ
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
112
diff
changeset
|
3773 'Limit' : 2 }) |
3e5934363e76
test_rest_find_limitµ
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
112
diff
changeset
|
3774 self.assertEqual(2, len(a)) |
3e5934363e76
test_rest_find_limitµ
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
112
diff
changeset
|
3775 |
3e5934363e76
test_rest_find_limitµ
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
112
diff
changeset
|
3776 b = [] |
3e5934363e76
test_rest_find_limitµ
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
112
diff
changeset
|
3777 for i in range(2): |
3e5934363e76
test_rest_find_limitµ
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
112
diff
changeset
|
3778 a = DoPost(_REMOTE, '/tools/find', { 'Level' : 'Instance', |
3e5934363e76
test_rest_find_limitµ
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
112
diff
changeset
|
3779 'Query' : { 'PatientName' : 'K*' }, |
3e5934363e76
test_rest_find_limitµ
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
112
diff
changeset
|
3780 'Limit' : 1, |
3e5934363e76
test_rest_find_limitµ
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
112
diff
changeset
|
3781 'Since' : i }) |
3e5934363e76
test_rest_find_limitµ
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
112
diff
changeset
|
3782 self.assertEqual(1, len(a)) |
3e5934363e76
test_rest_find_limitµ
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
112
diff
changeset
|
3783 b.append(a[0]) |
3e5934363e76
test_rest_find_limitµ
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
112
diff
changeset
|
3784 |
3e5934363e76
test_rest_find_limitµ
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
112
diff
changeset
|
3785 self.assertEqual(0, len(set(b) ^ set(knee))) |
115
45ebfab035b7
test_bitbucket_issue_46
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
113
diff
changeset
|
3786 |
45ebfab035b7
test_bitbucket_issue_46
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
113
diff
changeset
|
3787 |
45ebfab035b7
test_bitbucket_issue_46
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
113
diff
changeset
|
3788 def test_bitbucket_issue_46(self): |
45ebfab035b7
test_bitbucket_issue_46
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parents:
113
diff
changeset
|
3789 # "PHI remaining after anonymization" |
319 | 3790 # https://bugs.orthanc-server.com/show_bug.cgi?id=46 |
115
45ebfab035b7
test_bitbucket_issue_46
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
113
diff
changeset
|
3791 |
45ebfab035b7
test_bitbucket_issue_46
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
113
diff
changeset
|
3792 def GetAnonymizedTags(study, version): |
45ebfab035b7
test_bitbucket_issue_46
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parents:
113
diff
changeset
|
3793 anonymized = DoPost(_REMOTE, '/studies/%s/anonymize' % study, |
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test_bitbucket_issue_46
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parents:
113
diff
changeset
|
3794 { 'DicomVersion' : version }, |
45ebfab035b7
test_bitbucket_issue_46
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parents:
113
diff
changeset
|
3795 'application/json') ['ID'] |
45ebfab035b7
test_bitbucket_issue_46
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parents:
113
diff
changeset
|
3796 a = DoGet(_REMOTE, '/studies/%s/instances' % anonymized) |
45ebfab035b7
test_bitbucket_issue_46
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
113
diff
changeset
|
3797 self.assertEqual(1, len(a)) |
45ebfab035b7
test_bitbucket_issue_46
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
113
diff
changeset
|
3798 |
45ebfab035b7
test_bitbucket_issue_46
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
113
diff
changeset
|
3799 instance = a[0]['ID'] |
45ebfab035b7
test_bitbucket_issue_46
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
113
diff
changeset
|
3800 |
45ebfab035b7
test_bitbucket_issue_46
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
113
diff
changeset
|
3801 return (instance, DoGet(_REMOTE, '/instances/%s/tags' % instance)) |
45ebfab035b7
test_bitbucket_issue_46
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
113
diff
changeset
|
3802 |
45ebfab035b7
test_bitbucket_issue_46
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
113
diff
changeset
|
3803 UploadInstance(_REMOTE, 'Issue44/Monochrome1.dcm') |
45ebfab035b7
test_bitbucket_issue_46
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
113
diff
changeset
|
3804 origStudy = '6068a14b-d4df27af-9ec22145-538772d8-74f228ff' |
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test_bitbucket_issue_46
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
113
diff
changeset
|
3805 |
45ebfab035b7
test_bitbucket_issue_46
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
113
diff
changeset
|
3806 # Add the 0032,1033 (Requesting Service) and the 0010,1060 |
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test_bitbucket_issue_46
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
113
diff
changeset
|
3807 # (Patient's Mother's Birth Name) tags |
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test_bitbucket_issue_46
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parents:
113
diff
changeset
|
3808 newStudy = DoPost(_REMOTE, '/studies/%s/modify' % origStudy, |
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test_bitbucket_issue_46
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parents:
113
diff
changeset
|
3809 '{"Replace":{"0010,1060":"OSIMIS","0032,1033":"MOTHER"}}', |
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test_bitbucket_issue_46
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
113
diff
changeset
|
3810 'application/json')['ID'] |
45ebfab035b7
test_bitbucket_issue_46
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
113
diff
changeset
|
3811 |
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test_bitbucket_issue_46
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
113
diff
changeset
|
3812 # Use Table E.1-1 from PS 3.15-2008 |
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test_bitbucket_issue_46
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parents:
113
diff
changeset
|
3813 # https://raw.githubusercontent.com/jodogne/dicom-specification/master/2008/08_15pu.pdf |
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test_bitbucket_issue_46
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
113
diff
changeset
|
3814 (instance, tags) = GetAnonymizedTags(newStudy, "2008") |
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test_bitbucket_issue_46
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
113
diff
changeset
|
3815 self.assertTrue('0032,1033' in tags) |
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test_bitbucket_issue_46
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
113
diff
changeset
|
3816 self.assertTrue('0010,1060' in tags) |
45ebfab035b7
test_bitbucket_issue_46
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
113
diff
changeset
|
3817 |
45ebfab035b7
test_bitbucket_issue_46
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
113
diff
changeset
|
3818 # Use Table E.1-1 from PS 3.15-2011 (only if Orthanc >= 1.2.1) |
45ebfab035b7
test_bitbucket_issue_46
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
113
diff
changeset
|
3819 # https://raw.githubusercontent.com/jodogne/dicom-specification/master/2008/08_15pu.pdf |
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test_bitbucket_issue_46
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parents:
113
diff
changeset
|
3820 (instance, tags) = GetAnonymizedTags(newStudy, "2017c") |
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test_bitbucket_issue_46
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
113
diff
changeset
|
3821 self.assertFalse('0032,1033' in tags) |
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test_bitbucket_issue_46
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
113
diff
changeset
|
3822 self.assertFalse('0010,1060' in tags) |
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test_bitbucket_issue_46
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
113
diff
changeset
|
3823 |
45ebfab035b7
test_bitbucket_issue_46
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
113
diff
changeset
|
3824 t = {} |
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test_bitbucket_issue_46
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parents:
113
diff
changeset
|
3825 for (key, value) in tags.iteritems(): |
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test_bitbucket_issue_46
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parents:
113
diff
changeset
|
3826 t[value['Name']] = value['Value'] |
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test_bitbucket_issue_46
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
113
diff
changeset
|
3827 |
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test_bitbucket_issue_46
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
113
diff
changeset
|
3828 self.assertEqual('', t['StudyDate']) # Type 1 tag => cleared |
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test_bitbucket_issue_46
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
113
diff
changeset
|
3829 self.assertEqual('', t['StudyTime']) # Type 1 tag => cleared |
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test_bitbucket_issue_46
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parents:
113
diff
changeset
|
3830 self.assertEqual('', t['PatientSex']) # Type 1 tag => cleared |
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test_bitbucket_issue_46
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
113
diff
changeset
|
3831 self.assertFalse('SeriesDate' in t) # Type 3 tag => null |
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test_bitbucket_issue_46
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
113
diff
changeset
|
3832 self.assertFalse('SeriesTime' in t) # Type 3 tag => null |
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test_bitbucket_issue_46
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
113
diff
changeset
|
3833 |
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test_bitbucket_issue_46
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
113
diff
changeset
|
3834 with tempfile.NamedTemporaryFile(delete = True) as f: |
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test_bitbucket_issue_46
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113
diff
changeset
|
3835 # Run "dciodvfy" on the anonymized file to be sure it is still valid |
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113
diff
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|
3836 f.write(DoGet(_REMOTE, '/instances/%s/file' % instance)) |
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test_bitbucket_issue_46
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diff
changeset
|
3837 f.flush() |
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113
diff
changeset
|
3838 subprocess.check_output([ FindExecutable('dciodvfy'), f.name ], |
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test_bitbucket_issue_46
Sebastien Jodogne <s.jodogne@gmail.com>
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113
diff
changeset
|
3839 stderr = subprocess.STDOUT).split('\n') |
118
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diff
changeset
|
3840 |
a954c535fef6
test_bitbucket_issue_55
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diff
changeset
|
3841 |
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test_bitbucket_issue_55
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117
diff
changeset
|
3842 def test_bitbucket_issue_55(self): |
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diff
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|
3843 def Run(modify, query): |
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diff
changeset
|
3844 self.assertEqual(1, len(DoGet(_REMOTE, '/instances'))) |
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diff
changeset
|
3845 |
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117
diff
changeset
|
3846 operation = 'modify' if modify else 'anonymize' |
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diff
changeset
|
3847 |
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117
diff
changeset
|
3848 self.assertRaises(Exception, lambda: DoPost( |
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diff
changeset
|
3849 _REMOTE, '/studies/%s/%s' % (study, operation), query)) |
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diff
changeset
|
3850 self.assertEqual(1, len(DoGet(_REMOTE, '/instances'))) |
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test_bitbucket_issue_55
Sebastien Jodogne <s.jodogne@gmail.com>
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diff
changeset
|
3851 |
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117
diff
changeset
|
3852 query["Force"] = True |
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117
diff
changeset
|
3853 a = DoPost(_REMOTE, '/studies/%s/%s' % (study, operation), query)['Path'] |
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diff
changeset
|
3854 self.assertEqual(2, len(DoGet(_REMOTE, '/instances'))) |
a954c535fef6
test_bitbucket_issue_55
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
117
diff
changeset
|
3855 DoDelete(_REMOTE, a) |
a954c535fef6
test_bitbucket_issue_55
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
117
diff
changeset
|
3856 |
a954c535fef6
test_bitbucket_issue_55
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
117
diff
changeset
|
3857 self.assertEqual(1, len(DoGet(_REMOTE, '/instances'))) |
a954c535fef6
test_bitbucket_issue_55
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
117
diff
changeset
|
3858 |
a954c535fef6
test_bitbucket_issue_55
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
117
diff
changeset
|
3859 UploadInstance(_REMOTE, 'DummyCT.dcm') |
a954c535fef6
test_bitbucket_issue_55
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
117
diff
changeset
|
3860 study = 'b9c08539-26f93bde-c81ab0d7-bffaf2cb-a4d0bdd0' |
a954c535fef6
test_bitbucket_issue_55
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
117
diff
changeset
|
3861 |
a954c535fef6
test_bitbucket_issue_55
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
117
diff
changeset
|
3862 Run(True, { "Replace" : { "StudyInstanceUID" : "world" } }) |
a954c535fef6
test_bitbucket_issue_55
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
117
diff
changeset
|
3863 Run(True, { "Replace" : { "SeriesInstanceUID" : "world" } }) |
a954c535fef6
test_bitbucket_issue_55
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
117
diff
changeset
|
3864 Run(True, { "Replace" : { "SOPInstanceUID" : "world" } }) |
a954c535fef6
test_bitbucket_issue_55
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
117
diff
changeset
|
3865 |
a954c535fef6
test_bitbucket_issue_55
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
117
diff
changeset
|
3866 Run(False, { "Keep" : [ "StudyInstanceUID" ]}) |
a954c535fef6
test_bitbucket_issue_55
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
117
diff
changeset
|
3867 Run(False, { "Keep" : [ "SeriesInstanceUID" ]}) |
a954c535fef6
test_bitbucket_issue_55
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
117
diff
changeset
|
3868 Run(False, { "Keep" : [ "SOPInstanceUID" ]}) |
a954c535fef6
test_bitbucket_issue_55
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
117
diff
changeset
|
3869 |
a954c535fef6
test_bitbucket_issue_55
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
117
diff
changeset
|
3870 Run(False, { "Replace" : { "StudyInstanceUID" : "world" } }) |
a954c535fef6
test_bitbucket_issue_55
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
117
diff
changeset
|
3871 Run(False, { "Replace" : { "SeriesInstanceUID" : "world" } }) |
a954c535fef6
test_bitbucket_issue_55
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
117
diff
changeset
|
3872 Run(False, { "Replace" : { "SOPInstanceUID" : "world" } }) |
a954c535fef6
test_bitbucket_issue_55
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
117
diff
changeset
|
3873 |
120
fce08afe6b2d
test_bitbucket_issue_56
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
119
diff
changeset
|
3874 |
fce08afe6b2d
test_bitbucket_issue_56
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
119
diff
changeset
|
3875 def test_bitbucket_issue_56(self): |
fce08afe6b2d
test_bitbucket_issue_56
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
119
diff
changeset
|
3876 # Case-insensitive matching over accents. This test assumes |
fce08afe6b2d
test_bitbucket_issue_56
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
119
diff
changeset
|
3877 # that the "CaseSensitivePN" configuration option of Orthanc |
fce08afe6b2d
test_bitbucket_issue_56
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
119
diff
changeset
|
3878 # is set to "false" (default value). |
319 | 3879 # https://bugs.orthanc-server.com/show_bug.cgi?id=56 |
120
fce08afe6b2d
test_bitbucket_issue_56
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
119
diff
changeset
|
3880 |
fce08afe6b2d
test_bitbucket_issue_56
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
119
diff
changeset
|
3881 def Check(name, expected, expectedSensitive): |
fce08afe6b2d
test_bitbucket_issue_56
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
119
diff
changeset
|
3882 a = CallFindScu([ '-k', '0008,0005=ISO_IR 192', # Use UTF-8 |
fce08afe6b2d
test_bitbucket_issue_56
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
119
diff
changeset
|
3883 '-k', '0008,0052=PATIENT', |
fce08afe6b2d
test_bitbucket_issue_56
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
119
diff
changeset
|
3884 '-k', 'PatientName=%s' % name ]) |
fce08afe6b2d
test_bitbucket_issue_56
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
119
diff
changeset
|
3885 patientNames = re.findall('\(0010,0010\).*?\[(.*?)\]', a) |
fce08afe6b2d
test_bitbucket_issue_56
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
119
diff
changeset
|
3886 self.assertEqual(expected, len(patientNames)) |
fce08afe6b2d
test_bitbucket_issue_56
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
119
diff
changeset
|
3887 |
fce08afe6b2d
test_bitbucket_issue_56
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
119
diff
changeset
|
3888 a = DoPost(_REMOTE, '/tools/find', { 'Level' : 'Patient', |
fce08afe6b2d
test_bitbucket_issue_56
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
119
diff
changeset
|
3889 'CaseSensitive' : False, |
fce08afe6b2d
test_bitbucket_issue_56
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
119
diff
changeset
|
3890 'Query' : { 'PatientName' : name }}) |
fce08afe6b2d
test_bitbucket_issue_56
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
119
diff
changeset
|
3891 self.assertEqual(expected, len(a)) |
fce08afe6b2d
test_bitbucket_issue_56
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
119
diff
changeset
|
3892 |
fce08afe6b2d
test_bitbucket_issue_56
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
119
diff
changeset
|
3893 a = DoPost(_REMOTE, '/tools/find', { 'Level' : 'Patient', |
fce08afe6b2d
test_bitbucket_issue_56
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
119
diff
changeset
|
3894 'CaseSensitive' : True, |
fce08afe6b2d
test_bitbucket_issue_56
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
119
diff
changeset
|
3895 'Query' : { 'PatientName' : name }}) |
fce08afe6b2d
test_bitbucket_issue_56
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
119
diff
changeset
|
3896 self.assertEqual(expectedSensitive, len(a)) |
fce08afe6b2d
test_bitbucket_issue_56
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
119
diff
changeset
|
3897 |
fce08afe6b2d
test_bitbucket_issue_56
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
119
diff
changeset
|
3898 UploadInstance(_REMOTE, 'Encodings/Lena-latin1.dcm') |
fce08afe6b2d
test_bitbucket_issue_56
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
119
diff
changeset
|
3899 |
fce08afe6b2d
test_bitbucket_issue_56
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
119
diff
changeset
|
3900 # WildcardConstraint |
fce08afe6b2d
test_bitbucket_issue_56
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
119
diff
changeset
|
3901 Check('TeSt*', 1, 0) |
fce08afe6b2d
test_bitbucket_issue_56
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
119
diff
changeset
|
3902 Check('TeSt-a*', 0, 0) |
fce08afe6b2d
test_bitbucket_issue_56
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
119
diff
changeset
|
3903 Check('TeSt-É*', 1, 0) |
fce08afe6b2d
test_bitbucket_issue_56
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
119
diff
changeset
|
3904 Check('TeSt-é*', 1, 0) |
fce08afe6b2d
test_bitbucket_issue_56
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
119
diff
changeset
|
3905 Check('Test-é*', 1, 1) |
fce08afe6b2d
test_bitbucket_issue_56
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
119
diff
changeset
|
3906 |
fce08afe6b2d
test_bitbucket_issue_56
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
119
diff
changeset
|
3907 # ListConstraint |
fce08afe6b2d
test_bitbucket_issue_56
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
119
diff
changeset
|
3908 Check('Test-éüäöò\\nope', 1, 1) |
fce08afe6b2d
test_bitbucket_issue_56
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
119
diff
changeset
|
3909 Check('Test-ÉÜÄÖÒ\\nope', 1, 0) |
fce08afe6b2d
test_bitbucket_issue_56
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
119
diff
changeset
|
3910 |
fce08afe6b2d
test_bitbucket_issue_56
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
119
diff
changeset
|
3911 # ValueConstraint |
fce08afe6b2d
test_bitbucket_issue_56
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
119
diff
changeset
|
3912 Check('Test-éüäöò', 1, 1) |
fce08afe6b2d
test_bitbucket_issue_56
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
119
diff
changeset
|
3913 Check('Test-ÉÜÄÖÒ', 1, 0) |
fce08afe6b2d
test_bitbucket_issue_56
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
119
diff
changeset
|
3914 |
125 | 3915 |
3916 def test_gbk_alias(self): | |
3917 # https://groups.google.com/d/msg/orthanc-users/WMM8LMbjpUc/02-1f_yFCgAJ | |
3918 # This test fails on Orthanc <= 1.3.0 | |
3919 i = UploadInstance(_REMOTE, '2017-09-19-GBK-Tumashu.dcm')['ID'] | |
3920 tags = DoGet(_REMOTE, '/instances/%s/tags?simplify' % i) | |
3921 self.assertEqual(tags['PatientName'], u'徐浩凯') | |
3922 self.assertEqual(tags['InstitutionName'], u'灌云县疾病预防控制中心') | |
126 | 3923 |
3924 | |
3925 def test_long_tag(self): | |
3926 i = UploadInstance(_REMOTE, 'DummyCTWithLongTag.dcm')['ID'] | |
3927 series = 'f2635388-f01d497a-15f7c06b-ad7dba06-c4c599fe' | |
3928 | |
3929 tags = DoGet(_REMOTE, '/instances/%s/tags' % i) | |
3930 self.assertTrue('0018,1020' in tags) | |
3931 self.assertEqual('SoftwareVersions', tags['0018,1020']['Name']) | |
3932 self.assertEqual('TooLong', tags['0018,1020']['Type']) | |
3933 self.assertEqual(None, tags['0018,1020']['Value']) | |
3934 | |
3935 tags = DoGet(_REMOTE, '/instances/%s/tags?ignore-length=0018-1020' % i) | |
3936 self.assertTrue('0018,1020' in tags) | |
3937 self.assertEqual('SoftwareVersions', tags['0018,1020']['Name']) | |
3938 self.assertEqual('String', tags['0018,1020']['Type']) | |
3939 self.assertTrue(tags['0018,1020']['Value'].startswith('Lorem ipsum dolor sit amet')) | |
3940 | |
3941 tags = DoGet(_REMOTE, '/instances/%s/tags?simplify' % i) | |
3942 self.assertTrue('SoftwareVersions' in tags) | |
3943 self.assertEqual(None, tags['SoftwareVersions']) | |
3944 self.assertTrue('HeartRate' in tags) | |
3945 self.assertEqual(474, int(tags['HeartRate'])) | |
3946 | |
3947 tags = DoGet(_REMOTE, '/instances/%s/simplified-tags' % i) | |
3948 self.assertTrue('SoftwareVersions' in tags) | |
3949 self.assertEqual(None, tags['SoftwareVersions']) | |
3950 | |
3951 tags = DoGet(_REMOTE, '/instances/%s/tags?simplify&ignore-length=0018-1020' % i) | |
3952 self.assertTrue('SoftwareVersions' in tags) | |
3953 self.assertTrue(tags['SoftwareVersions'].startswith('Lorem ipsum dolor sit amet')) | |
3954 | |
3955 tags = DoGet(_REMOTE, '/instances/%s/tags?simplify&ignore-length=SoftwareVersions' % i) | |
3956 self.assertTrue('SoftwareVersions' in tags) | |
3957 self.assertTrue(tags['SoftwareVersions'].startswith('Lorem ipsum dolor sit amet')) | |
3958 | |
3959 tags = DoGet(_REMOTE, '/series/%s/instances-tags' % series) | |
3960 self.assertEqual(1, len(tags)) | |
3961 self.assertTrue(i in tags.keys()) | |
3962 self.assertTrue('0018,1020' in tags[i]) | |
3963 self.assertEqual('TooLong', tags[i]['0018,1020']['Type']) | |
3964 | |
3965 tags = DoGet(_REMOTE, '/series/%s/instances-tags?ignore-length=SoftwareVersions' % series) | |
3966 self.assertEqual(1, len(tags)) | |
3967 self.assertTrue(i in tags.keys()) | |
3968 self.assertTrue('0018,1020' in tags[i]) | |
3969 self.assertEqual('String', tags[i]['0018,1020']['Type']) | |
3970 self.assertTrue(tags[i]['0018,1020']['Value'].startswith('Lorem ipsum dolor sit amet')) | |
3971 | |
127
1eea4d3a1ba9
test_extended_media
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
126
diff
changeset
|
3972 |
1eea4d3a1ba9
test_extended_media
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
126
diff
changeset
|
3973 def test_extended_media(self): |
1eea4d3a1ba9
test_extended_media
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
126
diff
changeset
|
3974 UploadInstance(_REMOTE, 'Knee/T1/IM-0001-0001.dcm') |
1eea4d3a1ba9
test_extended_media
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
126
diff
changeset
|
3975 |
1eea4d3a1ba9
test_extended_media
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
126
diff
changeset
|
3976 z = GetArchive(_REMOTE, '/patients/%s/media?extended' % DoGet(_REMOTE, '/patients')[0]) |
1eea4d3a1ba9
test_extended_media
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
126
diff
changeset
|
3977 self.assertEqual(2, len(z.namelist())) |
1eea4d3a1ba9
test_extended_media
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
126
diff
changeset
|
3978 self.assertTrue('IMAGES/IM0' in z.namelist()) |
1eea4d3a1ba9
test_extended_media
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
126
diff
changeset
|
3979 self.assertTrue('DICOMDIR' in z.namelist()) |
1eea4d3a1ba9
test_extended_media
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
126
diff
changeset
|
3980 |
1eea4d3a1ba9
test_extended_media
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
126
diff
changeset
|
3981 try: |
1eea4d3a1ba9
test_extended_media
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
126
diff
changeset
|
3982 os.remove('/tmp/DICOMDIR') |
1eea4d3a1ba9
test_extended_media
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
126
diff
changeset
|
3983 except: |
1eea4d3a1ba9
test_extended_media
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
126
diff
changeset
|
3984 # The file does not exist |
1eea4d3a1ba9
test_extended_media
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
126
diff
changeset
|
3985 pass |
1eea4d3a1ba9
test_extended_media
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
126
diff
changeset
|
3986 |
1eea4d3a1ba9
test_extended_media
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
126
diff
changeset
|
3987 z.extract('DICOMDIR', '/tmp') |
1eea4d3a1ba9
test_extended_media
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
126
diff
changeset
|
3988 a = subprocess.check_output([ FindExecutable('dciodvfy'), '/tmp/DICOMDIR' ], |
1eea4d3a1ba9
test_extended_media
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
126
diff
changeset
|
3989 stderr = subprocess.STDOUT).split('\n') |
1eea4d3a1ba9
test_extended_media
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
126
diff
changeset
|
3990 self.assertEqual(5, len(a)) |
1eea4d3a1ba9
test_extended_media
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
126
diff
changeset
|
3991 self.assertTrue(a[0].startswith('Warning')) |
1eea4d3a1ba9
test_extended_media
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
126
diff
changeset
|
3992 self.assertEqual('BasicDirectory', a[1]) |
1eea4d3a1ba9
test_extended_media
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
126
diff
changeset
|
3993 self.assertTrue('not present in standard DICOM IOD' in a[2]) |
1eea4d3a1ba9
test_extended_media
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
126
diff
changeset
|
3994 self.assertTrue('not present in standard DICOM IOD' in a[3]) |
1eea4d3a1ba9
test_extended_media
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
126
diff
changeset
|
3995 self.assertEqual('', a[4]) |
1eea4d3a1ba9
test_extended_media
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
126
diff
changeset
|
3996 |
1eea4d3a1ba9
test_extended_media
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
126
diff
changeset
|
3997 a = subprocess.check_output([ FindExecutable('dcentvfy'), '/tmp/DICOMDIR' ], |
1eea4d3a1ba9
test_extended_media
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
126
diff
changeset
|
3998 stderr = subprocess.STDOUT).split('\n') |
1eea4d3a1ba9
test_extended_media
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
126
diff
changeset
|
3999 self.assertEqual(1, len(a)) |
1eea4d3a1ba9
test_extended_media
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
126
diff
changeset
|
4000 self.assertEqual('', a[0]) |
1eea4d3a1ba9
test_extended_media
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
126
diff
changeset
|
4001 |
1eea4d3a1ba9
test_extended_media
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
126
diff
changeset
|
4002 a = subprocess.check_output([ FindExecutable('dcm2xml'), '/tmp/DICOMDIR' ]) |
1eea4d3a1ba9
test_extended_media
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
126
diff
changeset
|
4003 self.assertTrue(re.search('1.3.46.670589.11.17521.5.0.3124.2008081908590448738', a) != None) |
1eea4d3a1ba9
test_extended_media
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
126
diff
changeset
|
4004 |
1eea4d3a1ba9
test_extended_media
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
126
diff
changeset
|
4005 # Check the presence of the series description (extended tag) |
1eea4d3a1ba9
test_extended_media
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
126
diff
changeset
|
4006 self.assertTrue(re.search('T1W_aTSE', a) != None) |
1eea4d3a1ba9
test_extended_media
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
126
diff
changeset
|
4007 |
1eea4d3a1ba9
test_extended_media
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
126
diff
changeset
|
4008 os.remove('/tmp/DICOMDIR') |
1eea4d3a1ba9
test_extended_media
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
126
diff
changeset
|
4009 |
1eea4d3a1ba9
test_extended_media
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
126
diff
changeset
|
4010 |
132
149144d854bb
Orthanc.test_anonymize_relationships_1/2
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
130
diff
changeset
|
4011 def test_anonymize_relationships_1(self): |
133
f0d4c4707e64
test_anonymize_relationships_3
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
132
diff
changeset
|
4012 UploadInstance(_REMOTE, 'Knee/T1/IM-0001-0001.dcm') |
f0d4c4707e64
test_anonymize_relationships_3
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
132
diff
changeset
|
4013 UploadInstance(_REMOTE, 'Knee/T1/IM-0001-0002.dcm') |
132
149144d854bb
Orthanc.test_anonymize_relationships_1/2
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
130
diff
changeset
|
4014 study = '0a9b3153-2512774b-2d9580de-1fc3dcf6-3bd83918' |
149144d854bb
Orthanc.test_anonymize_relationships_1/2
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
130
diff
changeset
|
4015 |
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Orthanc.test_anonymize_relationships_1/2
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
130
diff
changeset
|
4016 anonymized = DoPost(_REMOTE, '/studies/%s/anonymize' % study, |
149144d854bb
Orthanc.test_anonymize_relationships_1/2
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
130
diff
changeset
|
4017 '{}', |
149144d854bb
Orthanc.test_anonymize_relationships_1/2
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
130
diff
changeset
|
4018 'application/json')['ID'] |
149144d854bb
Orthanc.test_anonymize_relationships_1/2
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
130
diff
changeset
|
4019 |
149144d854bb
Orthanc.test_anonymize_relationships_1/2
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
130
diff
changeset
|
4020 a = DoGet(_REMOTE, '/studies/%s/instances' % study) |
149144d854bb
Orthanc.test_anonymize_relationships_1/2
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
130
diff
changeset
|
4021 self.assertEqual(2, len(a)) |
149144d854bb
Orthanc.test_anonymize_relationships_1/2
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
130
diff
changeset
|
4022 a1 = a[0]['ID'] |
149144d854bb
Orthanc.test_anonymize_relationships_1/2
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parents:
130
diff
changeset
|
4023 a2 = a[1]['ID'] |
149144d854bb
Orthanc.test_anonymize_relationships_1/2
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
130
diff
changeset
|
4024 |
149144d854bb
Orthanc.test_anonymize_relationships_1/2
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
130
diff
changeset
|
4025 b = DoGet(_REMOTE, '/studies/%s/instances' % anonymized) |
149144d854bb
Orthanc.test_anonymize_relationships_1/2
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
130
diff
changeset
|
4026 self.assertEqual(2, len(b)) |
149144d854bb
Orthanc.test_anonymize_relationships_1/2
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
130
diff
changeset
|
4027 b1 = b[0]['ID'] |
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Orthanc.test_anonymize_relationships_1/2
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
130
diff
changeset
|
4028 b2 = b[1]['ID'] |
149144d854bb
Orthanc.test_anonymize_relationships_1/2
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
130
diff
changeset
|
4029 |
149144d854bb
Orthanc.test_anonymize_relationships_1/2
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
130
diff
changeset
|
4030 SEQUENCE = '/instances/%s/content/ReferencedImageSequence' |
149144d854bb
Orthanc.test_anonymize_relationships_1/2
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
130
diff
changeset
|
4031 SOP = '/instances/%s/content/ReferencedImageSequence/%d/ReferencedSOPInstanceUID' |
149144d854bb
Orthanc.test_anonymize_relationships_1/2
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
130
diff
changeset
|
4032 CLASS = '/instances/%s/content/ReferencedImageSequence/%d/ReferencedSOPClassUID' |
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Orthanc.test_anonymize_relationships_1/2
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
130
diff
changeset
|
4033 FRAME = '/instances/%s/content/FrameOfReferenceUID' |
149144d854bb
Orthanc.test_anonymize_relationships_1/2
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
130
diff
changeset
|
4034 |
149144d854bb
Orthanc.test_anonymize_relationships_1/2
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
130
diff
changeset
|
4035 self.assertEqual(DoGet(_REMOTE, FRAME % a1), |
149144d854bb
Orthanc.test_anonymize_relationships_1/2
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
130
diff
changeset
|
4036 DoGet(_REMOTE, FRAME % a2)) |
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Orthanc.test_anonymize_relationships_1/2
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
130
diff
changeset
|
4037 self.assertEqual(DoGet(_REMOTE, FRAME % b1), |
149144d854bb
Orthanc.test_anonymize_relationships_1/2
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
130
diff
changeset
|
4038 DoGet(_REMOTE, FRAME % b2)) |
149144d854bb
Orthanc.test_anonymize_relationships_1/2
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
130
diff
changeset
|
4039 self.assertNotEqual(DoGet(_REMOTE, FRAME % a1), |
149144d854bb
Orthanc.test_anonymize_relationships_1/2
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
130
diff
changeset
|
4040 DoGet(_REMOTE, FRAME % b1)) |
149144d854bb
Orthanc.test_anonymize_relationships_1/2
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
130
diff
changeset
|
4041 self.assertNotEqual(DoGet(_REMOTE, FRAME % a2), |
149144d854bb
Orthanc.test_anonymize_relationships_1/2
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
130
diff
changeset
|
4042 DoGet(_REMOTE, FRAME % b2)) |
149144d854bb
Orthanc.test_anonymize_relationships_1/2
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
130
diff
changeset
|
4043 |
149144d854bb
Orthanc.test_anonymize_relationships_1/2
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
130
diff
changeset
|
4044 self.assertEqual(3, len(DoGet(_REMOTE, SEQUENCE % a1))) |
149144d854bb
Orthanc.test_anonymize_relationships_1/2
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
130
diff
changeset
|
4045 self.assertEqual(3, len(DoGet(_REMOTE, SEQUENCE % a2))) |
149144d854bb
Orthanc.test_anonymize_relationships_1/2
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
130
diff
changeset
|
4046 self.assertEqual(3, len(DoGet(_REMOTE, SEQUENCE % b1))) |
149144d854bb
Orthanc.test_anonymize_relationships_1/2
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
130
diff
changeset
|
4047 self.assertEqual(3, len(DoGet(_REMOTE, SEQUENCE % b2))) |
149144d854bb
Orthanc.test_anonymize_relationships_1/2
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
130
diff
changeset
|
4048 |
149144d854bb
Orthanc.test_anonymize_relationships_1/2
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
130
diff
changeset
|
4049 for i in range(3): |
149144d854bb
Orthanc.test_anonymize_relationships_1/2
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
130
diff
changeset
|
4050 self.assertEqual(DoGet(_REMOTE, SOP % (a1, i)), |
149144d854bb
Orthanc.test_anonymize_relationships_1/2
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
130
diff
changeset
|
4051 DoGet(_REMOTE, SOP % (a2, i))) |
149144d854bb
Orthanc.test_anonymize_relationships_1/2
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
130
diff
changeset
|
4052 self.assertEqual(DoGet(_REMOTE, SOP % (b1, i)), |
149144d854bb
Orthanc.test_anonymize_relationships_1/2
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
130
diff
changeset
|
4053 DoGet(_REMOTE, SOP % (b2, i))) |
149144d854bb
Orthanc.test_anonymize_relationships_1/2
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
130
diff
changeset
|
4054 self.assertNotEqual(DoGet(_REMOTE, SOP % (a1, i)), |
149144d854bb
Orthanc.test_anonymize_relationships_1/2
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
130
diff
changeset
|
4055 DoGet(_REMOTE, SOP % (b1, i))) |
149144d854bb
Orthanc.test_anonymize_relationships_1/2
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
130
diff
changeset
|
4056 self.assertNotEqual(DoGet(_REMOTE, SOP % (a2, i)), |
149144d854bb
Orthanc.test_anonymize_relationships_1/2
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
130
diff
changeset
|
4057 DoGet(_REMOTE, SOP % (b2, i))) |
149144d854bb
Orthanc.test_anonymize_relationships_1/2
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
130
diff
changeset
|
4058 self.assertEqual(DoGet(_REMOTE, CLASS % (a1, i)), |
149144d854bb
Orthanc.test_anonymize_relationships_1/2
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
130
diff
changeset
|
4059 DoGet(_REMOTE, CLASS % (b1, i))) |
149144d854bb
Orthanc.test_anonymize_relationships_1/2
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
130
diff
changeset
|
4060 self.assertEqual(DoGet(_REMOTE, CLASS % (a2, i)), |
149144d854bb
Orthanc.test_anonymize_relationships_1/2
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
130
diff
changeset
|
4061 DoGet(_REMOTE, CLASS % (b2, i))) |
149144d854bb
Orthanc.test_anonymize_relationships_1/2
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
130
diff
changeset
|
4062 |
149144d854bb
Orthanc.test_anonymize_relationships_1/2
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
130
diff
changeset
|
4063 |
149144d854bb
Orthanc.test_anonymize_relationships_1/2
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
130
diff
changeset
|
4064 def test_anonymize_relationships_2(self): |
133
f0d4c4707e64
test_anonymize_relationships_3
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
132
diff
changeset
|
4065 UploadInstance(_REMOTE, 'Comunix/Ct/IM-0001-0001.dcm') |
f0d4c4707e64
test_anonymize_relationships_3
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
132
diff
changeset
|
4066 UploadInstance(_REMOTE, 'Comunix/Ct/IM-0001-0002.dcm') |
132
149144d854bb
Orthanc.test_anonymize_relationships_1/2
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
130
diff
changeset
|
4067 study = '6c65289b-db2fcb71-7eaf73f4-8e12470c-a4d6d7cf' |
149144d854bb
Orthanc.test_anonymize_relationships_1/2
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
130
diff
changeset
|
4068 |
149144d854bb
Orthanc.test_anonymize_relationships_1/2
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
130
diff
changeset
|
4069 anonymized = DoPost(_REMOTE, '/studies/%s/anonymize' % study, |
149144d854bb
Orthanc.test_anonymize_relationships_1/2
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
130
diff
changeset
|
4070 '{}', |
149144d854bb
Orthanc.test_anonymize_relationships_1/2
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
130
diff
changeset
|
4071 'application/json')['ID'] |
149144d854bb
Orthanc.test_anonymize_relationships_1/2
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
130
diff
changeset
|
4072 |
149144d854bb
Orthanc.test_anonymize_relationships_1/2
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
130
diff
changeset
|
4073 a = DoGet(_REMOTE, '/studies/%s/instances' % study) |
149144d854bb
Orthanc.test_anonymize_relationships_1/2
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
130
diff
changeset
|
4074 self.assertEqual(2, len(a)) |
149144d854bb
Orthanc.test_anonymize_relationships_1/2
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
130
diff
changeset
|
4075 a1 = a[0]['ID'] |
149144d854bb
Orthanc.test_anonymize_relationships_1/2
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
130
diff
changeset
|
4076 a2 = a[1]['ID'] |
149144d854bb
Orthanc.test_anonymize_relationships_1/2
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
130
diff
changeset
|
4077 |
149144d854bb
Orthanc.test_anonymize_relationships_1/2
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
130
diff
changeset
|
4078 b = DoGet(_REMOTE, '/studies/%s/instances' % anonymized) |
149144d854bb
Orthanc.test_anonymize_relationships_1/2
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
130
diff
changeset
|
4079 self.assertEqual(2, len(b)) |
149144d854bb
Orthanc.test_anonymize_relationships_1/2
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
130
diff
changeset
|
4080 b1 = b[0]['ID'] |
149144d854bb
Orthanc.test_anonymize_relationships_1/2
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
130
diff
changeset
|
4081 b2 = b[1]['ID'] |
149144d854bb
Orthanc.test_anonymize_relationships_1/2
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
130
diff
changeset
|
4082 |
149144d854bb
Orthanc.test_anonymize_relationships_1/2
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
130
diff
changeset
|
4083 SEQUENCE = '/instances/%s/content/SourceImageSequence' |
149144d854bb
Orthanc.test_anonymize_relationships_1/2
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
130
diff
changeset
|
4084 SOP = '/instances/%s/content/SourceImageSequence/%d/ReferencedSOPInstanceUID' |
149144d854bb
Orthanc.test_anonymize_relationships_1/2
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
130
diff
changeset
|
4085 CLASS = '/instances/%s/content/SourceImageSequence/%d/ReferencedSOPClassUID' |
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Orthanc.test_anonymize_relationships_1/2
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
130
diff
changeset
|
4086 |
149144d854bb
Orthanc.test_anonymize_relationships_1/2
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
130
diff
changeset
|
4087 self.assertEqual(1, len(DoGet(_REMOTE, SEQUENCE % a1))) |
149144d854bb
Orthanc.test_anonymize_relationships_1/2
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
130
diff
changeset
|
4088 self.assertEqual(1, len(DoGet(_REMOTE, SEQUENCE % a2))) |
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Orthanc.test_anonymize_relationships_1/2
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
130
diff
changeset
|
4089 self.assertEqual(1, len(DoGet(_REMOTE, SEQUENCE % b1))) |
149144d854bb
Orthanc.test_anonymize_relationships_1/2
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
130
diff
changeset
|
4090 self.assertEqual(1, len(DoGet(_REMOTE, SEQUENCE % b2))) |
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Orthanc.test_anonymize_relationships_1/2
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
130
diff
changeset
|
4091 self.assertEqual(DoGet(_REMOTE, SOP % (a1, 0)), |
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Orthanc.test_anonymize_relationships_1/2
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
130
diff
changeset
|
4092 DoGet(_REMOTE, SOP % (a2, 0))) |
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Orthanc.test_anonymize_relationships_1/2
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
130
diff
changeset
|
4093 self.assertEqual(DoGet(_REMOTE, SOP % (b1, 0)), |
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Orthanc.test_anonymize_relationships_1/2
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
130
diff
changeset
|
4094 DoGet(_REMOTE, SOP % (b2, 0))) |
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Orthanc.test_anonymize_relationships_1/2
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
130
diff
changeset
|
4095 self.assertNotEqual(DoGet(_REMOTE, SOP % (a1, 0)), |
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Orthanc.test_anonymize_relationships_1/2
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
130
diff
changeset
|
4096 DoGet(_REMOTE, SOP % (b1, 0))) |
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Orthanc.test_anonymize_relationships_1/2
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
130
diff
changeset
|
4097 self.assertNotEqual(DoGet(_REMOTE, SOP % (a2, 0)), |
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Orthanc.test_anonymize_relationships_1/2
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
130
diff
changeset
|
4098 DoGet(_REMOTE, SOP % (b2, 0))) |
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Orthanc.test_anonymize_relationships_1/2
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parents:
130
diff
changeset
|
4099 self.assertEqual(DoGet(_REMOTE, CLASS % (a1, 0)), |
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Orthanc.test_anonymize_relationships_1/2
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
130
diff
changeset
|
4100 DoGet(_REMOTE, CLASS % (b1, 0))) |
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Orthanc.test_anonymize_relationships_1/2
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parents:
130
diff
changeset
|
4101 self.assertEqual(DoGet(_REMOTE, CLASS % (a2, 0)), |
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Orthanc.test_anonymize_relationships_1/2
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
130
diff
changeset
|
4102 DoGet(_REMOTE, CLASS % (b2, 0))) |
133
f0d4c4707e64
test_anonymize_relationships_3
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
132
diff
changeset
|
4103 |
f0d4c4707e64
test_anonymize_relationships_3
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changeset
|
4104 |
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|
4105 def test_anonymize_relationships_3(self): |
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|
4106 sr1 = UploadInstance(_REMOTE, 'HierarchicalAnonymization/StructuredReports/IM0')['ID'] |
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4107 mr1 = UploadInstance(_REMOTE, 'HierarchicalAnonymization/StructuredReports/IM631')['ID'] |
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4108 study = 'ef351eb2-c1147229-062736b8-35a151e3-e32d526b' |
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diff
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|
4109 |
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|
4110 anonymized = DoPost(_REMOTE, '/studies/%s/anonymize' % study, |
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|
4111 { "Keep" : [ "ContentSequence" ] }) ['ID'] |
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|
4112 |
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4113 a = DoGet(_REMOTE, '/studies/%s/instances' % anonymized) |
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4114 self.assertEqual(2, len(a)) |
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|
4115 |
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4116 if DoGet(_REMOTE, '/instances/%s/content/Modality' % a[0]['ID']) == 'SR': |
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4117 sr2 = a[0]['ID'] |
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4118 mr2 = a[1]['ID'] |
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|
4119 else: |
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changeset
|
4120 sr2 = a[1]['ID'] |
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|
4121 mr2 = a[0]['ID'] |
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|
4122 |
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4123 self.assertEqual(DoGet(_REMOTE, '/instances/%s/content/Modality' % sr1), |
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4124 DoGet(_REMOTE, '/instances/%s/content/Modality' % sr2)) |
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4125 self.assertEqual(DoGet(_REMOTE, '/instances/%s/content/Modality' % mr1), |
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4126 DoGet(_REMOTE, '/instances/%s/content/Modality' % mr2)) |
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4127 |
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4128 mrUid1 = DoGet(_REMOTE, '/instances/%s' % mr1)['MainDicomTags']['SOPInstanceUID'] |
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4129 mrUid2 = DoGet(_REMOTE, '/instances/%s' % mr2)['MainDicomTags']['SOPInstanceUID'] |
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4130 mrSeries1 = DoGet(_REMOTE, '/instances/%s/content/SeriesInstanceUID' % mr1).strip('\x00') |
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|
4131 mrSeries2 = DoGet(_REMOTE, '/instances/%s/content/SeriesInstanceUID' % mr2).strip('\x00') |
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4132 mrStudy1 = DoGet(_REMOTE, '/instances/%s/content/StudyInstanceUID' % mr1).strip('\x00') |
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|
4133 mrStudy2 = DoGet(_REMOTE, '/instances/%s/content/StudyInstanceUID' % mr2).strip('\x00') |
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diff
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|
4134 |
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diff
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|
4135 PATH1 = '/instances/%s/content/CurrentRequestedProcedureEvidenceSequence' |
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|
4136 PATH2 = PATH1 + '/0/ReferencedSeriesSequence' |
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|
4137 PATH3 = PATH2 + '/0/ReferencedSOPSequence' |
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|
4138 PATH4 = PATH3 + '/0/ReferencedSOPInstanceUID' |
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|
4139 PATH5 = PATH3 + '/0/ReferencedSOPClassUID' |
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diff
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|
4140 |
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diff
changeset
|
4141 self.assertEqual(1, len(DoGet(_REMOTE, PATH1 % sr1))) |
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diff
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|
4142 self.assertEqual(1, len(DoGet(_REMOTE, PATH2 % sr1))) |
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diff
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|
4143 self.assertEqual(1, len(DoGet(_REMOTE, PATH3 % sr1))) |
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diff
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|
4144 self.assertEqual(DoGet(_REMOTE, PATH4 % sr1), mrUid1) |
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diff
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|
4145 self.assertEqual(mrSeries1, DoGet(_REMOTE, (PATH2 + '/0/SeriesInstanceUID') % sr1).strip('\x00')) |
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diff
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|
4146 self.assertEqual(mrStudy1, DoGet(_REMOTE, (PATH1 + '/0/StudyInstanceUID') % sr1).strip('\x00')) |
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diff
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|
4147 |
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diff
changeset
|
4148 self.assertEqual(1, len(DoGet(_REMOTE, PATH1 % sr2))) |
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parents:
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diff
changeset
|
4149 self.assertEqual(1, len(DoGet(_REMOTE, PATH2 % sr2))) |
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diff
changeset
|
4150 self.assertEqual(1, len(DoGet(_REMOTE, PATH3 % sr2))) |
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diff
changeset
|
4151 self.assertEqual(DoGet(_REMOTE, PATH5 % sr1), DoGet(_REMOTE, PATH5 % sr2)) |
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132
diff
changeset
|
4152 |
f0d4c4707e64
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parents:
132
diff
changeset
|
4153 self.assertEqual(mrUid2, DoGet(_REMOTE, PATH4 % sr2).strip('\x00')) |
f0d4c4707e64
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parents:
132
diff
changeset
|
4154 self.assertEqual(mrSeries2, DoGet(_REMOTE, (PATH2 + '/0/SeriesInstanceUID') % sr2).strip('\x00')) |
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parents:
132
diff
changeset
|
4155 self.assertEqual(mrStudy2, DoGet(_REMOTE, (PATH1 + '/0/StudyInstanceUID') % sr2).strip('\x00')) |
f0d4c4707e64
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132
diff
changeset
|
4156 |
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test_anonymize_relationships_3
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parents:
132
diff
changeset
|
4157 content1 = DoGet(_REMOTE, '/instances/%s/tags?simplify' % sr1) ['ContentSequence'] |
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132
diff
changeset
|
4158 content2 = DoGet(_REMOTE, '/instances/%s/tags?simplify' % sr2) ['ContentSequence'] |
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132
diff
changeset
|
4159 self.assertEqual(str(content1), str(content2)) |
141
5de178abe4d8
test_bitbucket_issue_94
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
138
diff
changeset
|
4160 |
5de178abe4d8
test_bitbucket_issue_94
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
138
diff
changeset
|
4161 |
5de178abe4d8
test_bitbucket_issue_94
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
138
diff
changeset
|
4162 def test_bitbucket_issue_94(self): |
5de178abe4d8
test_bitbucket_issue_94
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
138
diff
changeset
|
4163 # "a simple instance modification should not modify FrameOfReferenceUID + ..." |
319 | 4164 # https://bugs.orthanc-server.com/show_bug.cgi?id=94 |
141
5de178abe4d8
test_bitbucket_issue_94
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
138
diff
changeset
|
4165 i = UploadInstance(_REMOTE, 'Issue94.dcm')['ID'] |
5de178abe4d8
test_bitbucket_issue_94
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
138
diff
changeset
|
4166 |
5de178abe4d8
test_bitbucket_issue_94
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
138
diff
changeset
|
4167 source = DoGet(_REMOTE, '/instances/%s/attachments/dicom/data' % i) |
5de178abe4d8
test_bitbucket_issue_94
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
138
diff
changeset
|
4168 |
5de178abe4d8
test_bitbucket_issue_94
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
138
diff
changeset
|
4169 modified = DoPost(_REMOTE, '/instances/%s/modify' % i, |
5de178abe4d8
test_bitbucket_issue_94
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
138
diff
changeset
|
4170 { "Replace" : {"PatientID" : "toto"}, "Force": True}) |
5de178abe4d8
test_bitbucket_issue_94
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
138
diff
changeset
|
4171 |
5de178abe4d8
test_bitbucket_issue_94
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
138
diff
changeset
|
4172 anonymized = DoPost(_REMOTE, '/instances/%s/anonymize' % i) |
5de178abe4d8
test_bitbucket_issue_94
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
138
diff
changeset
|
4173 |
5de178abe4d8
test_bitbucket_issue_94
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
138
diff
changeset
|
4174 a = ExtractDicomTags(source, [ 'FrameOfReferenceUID' ]) |
5de178abe4d8
test_bitbucket_issue_94
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
138
diff
changeset
|
4175 self.assertEqual(1, len(a)) |
5de178abe4d8
test_bitbucket_issue_94
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
138
diff
changeset
|
4176 |
5de178abe4d8
test_bitbucket_issue_94
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
138
diff
changeset
|
4177 b = ExtractDicomTags(modified, [ 'FrameOfReferenceUID' ]) |
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test_bitbucket_issue_94
Sebastien Jodogne <s.jodogne@gmail.com>
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138
diff
changeset
|
4178 self.assertEqual(1, len(b)) |
5de178abe4d8
test_bitbucket_issue_94
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
138
diff
changeset
|
4179 |
5de178abe4d8
test_bitbucket_issue_94
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
138
diff
changeset
|
4180 c = ExtractDicomTags(anonymized, [ 'FrameOfReferenceUID' ]) |
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138
diff
changeset
|
4181 self.assertEqual(1, len(c)) |
5de178abe4d8
test_bitbucket_issue_94
Sebastien Jodogne <s.jodogne@gmail.com>
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138
diff
changeset
|
4182 |
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test_bitbucket_issue_94
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
138
diff
changeset
|
4183 self.assertEqual(a, b) # Modified DICOM |
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138
diff
changeset
|
4184 self.assertNotEqual(a, c) # Anonymized DICOM |
143
28d50ffac07d
test_metadata_origin
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142
diff
changeset
|
4185 |
28d50ffac07d
test_metadata_origin
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142
diff
changeset
|
4186 |
28d50ffac07d
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142
diff
changeset
|
4187 def test_metadata_origin(self): |
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142
diff
changeset
|
4188 # Upload using the REST API |
144
7809fdf8056f
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143
diff
changeset
|
4189 i = UploadInstance(_REMOTE, 'Knee/T1/IM-0001-0001.dcm')['ID'] |
143
28d50ffac07d
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142
diff
changeset
|
4190 self.assertEqual('RestApi', DoGet(_REMOTE, '/instances/%s/metadata/Origin' % i)) |
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142
diff
changeset
|
4191 self.assertEqual('', DoGet(_REMOTE, '/instances/%s/metadata/RemoteAET' % i)) |
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142
diff
changeset
|
4192 self.assertNotEqual('', DoGet(_REMOTE, '/instances/%s/metadata/RemoteIP' % i)) |
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142
diff
changeset
|
4193 self.assertRaises(Exception, lambda: DoGet(_REMOTE, '/instances/%s/metadata/CalledAET' % i)) |
315 | 4194 |
4195 # "HttpUsername" is empty iff "AuthenticationEnabled" is "false" | |
4196 self.assertTrue(DoGet(_REMOTE, '/instances/%s/metadata/HttpUsername' % i) in [ '', 'alice' ]) | |
4197 | |
144
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testing metadata?expand
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143
diff
changeset
|
4198 m = DoGet(_REMOTE, '/instances/%s/metadata?expand' % i) |
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diff
changeset
|
4199 self.assertEqual('RestApi', m['Origin']) |
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143
diff
changeset
|
4200 self.assertEqual('', m['RemoteAET']) |
7809fdf8056f
testing metadata?expand
Sebastien Jodogne <s.jodogne@gmail.com>
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143
diff
changeset
|
4201 self.assertNotEqual('', m['RemoteIP']) |
7809fdf8056f
testing metadata?expand
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143
diff
changeset
|
4202 self.assertFalse('CalledAET' in m) |
315 | 4203 self.assertTrue('HttpUsername' in m) |
4204 self.assertTrue(m['HttpUsername'] in [ '', 'alice' ]) | |
144
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testing metadata?expand
Sebastien Jodogne <s.jodogne@gmail.com>
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143
diff
changeset
|
4205 |
7809fdf8056f
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Sebastien Jodogne <s.jodogne@gmail.com>
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143
diff
changeset
|
4206 self.assertEqual('1.2.840.10008.1.2.4.91', m['TransferSyntax']) |
7809fdf8056f
testing metadata?expand
Sebastien Jodogne <s.jodogne@gmail.com>
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143
diff
changeset
|
4207 self.assertEqual('1.2.840.10008.5.1.4.1.1.4', m['SopClassUid']) |
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testing metadata?expand
Sebastien Jodogne <s.jodogne@gmail.com>
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143
diff
changeset
|
4208 self.assertEqual('1', m['IndexInSeries']) |
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testing metadata?expand
Sebastien Jodogne <s.jodogne@gmail.com>
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143
diff
changeset
|
4209 self.assertTrue('ReceptionDate' in m) |
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143
diff
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4210 |
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4211 DoDelete(_REMOTE, '/instances/%s' % i) |
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4212 |
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4213 # Upload using the DICOM protocol |
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4214 subprocess.check_call([ FindExecutable('storescu'), |
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4215 _REMOTE['Server'], str(_REMOTE['DicomPort']), |
144
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4216 GetDatabasePath('Knee/T1/IM-0001-0001.dcm'), |
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4217 '-xw' ]) # Propose JPEG2000 |
143
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4218 self.assertEqual('DicomProtocol', DoGet(_REMOTE, '/instances/%s/metadata/Origin' % i)) |
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4219 self.assertEqual('STORESCU', DoGet(_REMOTE, '/instances/%s/metadata/RemoteAET' % i)) |
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4220 self.assertNotEqual('', DoGet(_REMOTE, '/instances/%s/metadata/RemoteIP' % i)) |
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4221 self.assertEqual('ANY-SCP', DoGet(_REMOTE, '/instances/%s/metadata/CalledAET' % i)) |
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4222 self.assertRaises(Exception, lambda: DoGet(_REMOTE, '/instances/%s/metadata/HttpUsername' % i)) |
144
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4223 |
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4224 m = DoGet(_REMOTE, '/instances/%s/metadata?expand' % i) |
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4225 self.assertEqual('DicomProtocol', m['Origin']) |
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4226 self.assertEqual('STORESCU', m['RemoteAET']) |
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4227 self.assertNotEqual('', m['RemoteIP']) |
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4228 self.assertEqual('ANY-SCP', m['CalledAET']) |
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4229 self.assertFalse('HttpUsername' in m) |
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4230 |
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4231 self.assertEqual('1.2.840.10008.1.2.4.91', m['TransferSyntax']) |
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4232 self.assertEqual('1.2.840.10008.5.1.4.1.1.4', m['SopClassUid']) |
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4233 self.assertEqual('1', m['IndexInSeries']) |
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4234 self.assertTrue('ReceptionDate' in m) |
147 | 4235 |
4236 | |
4237 def test_lua_deadlock(self): | |
4238 # Rana Asim Wajid (2018-07-14): "It does seem that the issue | |
4239 # is with the lua script I'm using for conversion of images to | |
4240 # JPEG2000. When the script is used with 1.4.0 the first | |
4241 # instance appears to be stored and then everything just | |
4242 # halts, ie Orthanc wont respond to anything after that." | |
4243 # https://groups.google.com/d/msg/orthanc-users/Rc-Beb42xc8/JUgdzrmCAgAJ | |
174 | 4244 InstallLuaScriptFromPath(_REMOTE, 'Lua/Jpeg2000Conversion.lua') |
147 | 4245 |
4246 subprocess.check_call([ FindExecutable('storescu'), | |
4247 _REMOTE['Server'], str(_REMOTE['DicomPort']), | |
4248 GetDatabasePath('Brainix/Flair/IM-0001-0001.dcm'), | |
4249 GetDatabasePath('Brainix/Flair/IM-0001-0002.dcm'), | |
4250 ]) | |
4251 | |
4252 instances = DoGet(_REMOTE, '/instances') | |
4253 self.assertEqual(2, len(instances)) | |
4254 | |
4255 t1 = DoGet(_REMOTE, '/instances/%s/metadata/TransferSyntax' % instances[0]) | |
4256 t2 = DoGet(_REMOTE, '/instances/%s/metadata/TransferSyntax' % instances[1]) | |
175 | 4257 self.assertEqual('1.2.840.10008.1.2.4.90', t1) # this will fail if libgdcm-tools is not installed |
147 | 4258 self.assertEqual(t1, t2); |
154
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4259 |
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4260 |
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4261 def test_find_group_length(self): |
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4262 # Orthanc <= 1.4.1 fails to answer C-FIND queries that contain |
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4263 # one of the Generic Group Length tags (*, 0x0000) |
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4264 a = UploadInstance(_REMOTE, 'Brainix/Flair/IM-0001-0001.dcm')['ID'] |
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4265 result = CallFindScu([ '-k', '0008,0052=STUDY', '-k', '0008,0000=80' ]) |
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4266 self.assertFalse('UnableToProcess' in result) |
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4267 self.assertFalse('E:' in result) |
179
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4268 |
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4269 |
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4270 def test_split(self): |
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4271 UploadInstance(_REMOTE, 'Knee/T1/IM-0001-0001.dcm') |
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4272 UploadInstance(_REMOTE, 'Knee/T2/IM-0001-0001.dcm') |
254
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4273 knee1Sop = '1.3.46.670589.11.17521.5.0.3124.2008081908590448738' |
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4274 knee2Sop = '1.3.46.670589.11.17521.5.0.3124.2008081909113806560' |
179
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4275 study = '0a9b3153-2512774b-2d9580de-1fc3dcf6-3bd83918' |
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4276 t1 = '6de73705-c4e65c1b-9d9ea1b5-cabcd8e7-f15e4285' |
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4277 t2 = 'bbf7a453-0d34251a-03663b55-46bb31b9-ffd74c59' |
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4278 |
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4279 self.assertEqual(1, len(DoGet(_REMOTE, '/studies'))) |
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4280 self.assertEqual(2, len(DoGet(_REMOTE, '/series'))) |
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4281 |
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4282 info = DoGet(_REMOTE, '/studies/%s' % study) |
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4283 self.assertTrue('ReferringPhysicianName' in info['MainDicomTags']) |
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4284 |
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4285 job = MonitorJob2(_REMOTE, lambda: DoPost |
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4286 (_REMOTE, '/studies/%s/split' % study, { |
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4287 'Series' : [ t2 ], |
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4288 'Replace' : { 'PatientName' : 'Hello' }, |
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4289 'Remove' : [ 'ReferringPhysicianName' ], |
181 | 4290 'KeepSource' : False, |
4291 'Asynchronous' : True | |
179
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4292 })) |
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4293 |
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4294 self.assertNotEqual(None, job) |
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4295 |
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4296 studies = set(DoGet(_REMOTE, '/studies')) |
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4297 self.assertEqual(2, len(studies)) |
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4298 |
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4299 series = set(DoGet(_REMOTE, '/series')) |
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4300 self.assertEqual(2, len(series)) |
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4301 self.assertTrue(t1 in series) |
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4302 |
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4303 study2 = DoGet(_REMOTE, '/jobs/%s' % job)['Content']['TargetStudy'] |
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4304 self.assertTrue(study in studies) |
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4305 self.assertTrue(study2 in studies) |
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4306 |
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4307 info = DoGet(_REMOTE, '/studies/%s' % study2) |
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4308 self.assertTrue('Hello', info['PatientMainDicomTags']['PatientName']) |
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4309 self.assertFalse('ReferringPhysicianName' in info['MainDicomTags']) |
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4310 |
254
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4311 sopInstanceUids = set() |
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4312 for i in DoGet(_REMOTE, '/instances?expand'): |
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4313 sopInstanceUids.add(i['MainDicomTags']['SOPInstanceUID']) |
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4314 |
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4315 self.assertTrue(knee1Sop in sopInstanceUids) |
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4316 |
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4317 # Fails if Orthanc <= 1.5.7 |
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4318 self.assertFalse(knee2Sop in sopInstanceUids) # Because "KeepSource" is False |
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4319 |
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4320 # One original instance is kept, another one is added because of the split |
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4321 self.assertEqual(2, len(sopInstanceUids)) |
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4322 |
179
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4323 |
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4324 def test_merge(self): |
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4325 UploadInstance(_REMOTE, 'Knee/T1/IM-0001-0001.dcm') |
254
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4326 UploadInstance(_REMOTE, 'Brainix/Flair/IM-0001-0001.dcm') |
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4327 kneeSop = '1.3.46.670589.11.17521.5.0.3124.2008081908590448738' |
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4328 brainixSop = '1.3.46.670589.11.0.0.11.4.2.0.8743.5.5396.2006120114314079549' |
179
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4329 knee = '0a9b3153-2512774b-2d9580de-1fc3dcf6-3bd83918' |
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4330 t1 = '6de73705-c4e65c1b-9d9ea1b5-cabcd8e7-f15e4285' |
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4331 brainix = '27f7126f-4f66fb14-03f4081b-f9341db2-53925988' |
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4332 flair = '1e2c125c-411b8e86-3f4fe68e-a7584dd3-c6da78f0' |
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4333 |
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4334 self.assertEqual(2, len(DoGet(_REMOTE, '/studies'))) |
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4335 self.assertEqual(2, len(DoGet(_REMOTE, '/series'))) |
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4336 |
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4337 job = MonitorJob2(_REMOTE, lambda: DoPost |
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4338 (_REMOTE, '/studies/%s/merge' % knee, { |
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4339 'Resources' : [ brainix ], |
181 | 4340 'KeepSource' : True, |
4341 'Synchronous' : False | |
179
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4342 })) |
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4343 |
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4344 self.assertNotEqual(None, job) |
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4345 |
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4346 studies = set(DoGet(_REMOTE, '/studies')) |
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4347 self.assertEqual(2, len(studies)) |
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4348 self.assertTrue(knee in studies) |
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4349 self.assertTrue(brainix in studies) |
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4350 |
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4351 series = set(DoGet(_REMOTE, '/studies/%s' % knee)['Series']) |
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4352 self.assertTrue(t1 in series) |
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4353 series.remove(t1) |
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4354 self.assertEqual(1, len(series)) |
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4355 |
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4356 instances = DoGet(_REMOTE, '/series/%s' % list(series)[0])['Instances'] |
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4357 self.assertEqual(1, len(instances)) |
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4358 merged = DoGet(_REMOTE, '/instances/%s/tags?simplify' % instances[0]) |
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4359 |
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4360 instances = DoGet(_REMOTE, '/series/%s' % t1)['Instances'] |
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4361 self.assertEqual(1, len(instances)) |
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4362 a = DoGet(_REMOTE, '/instances/%s/tags?simplify' % instances[0]) |
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4363 |
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4364 instances = DoGet(_REMOTE, '/series/%s' % flair)['Instances'] |
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4365 self.assertEqual(1, len(instances)) |
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4366 b = DoGet(_REMOTE, '/instances/%s/tags?simplify' % instances[0]) |
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4367 |
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4368 tags = DoGet(_REMOTE, '/studies/%s' % knee) |
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4369 |
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4370 for key in tags['PatientMainDicomTags']: |
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4371 self.assertEqual(a[key], merged[key]) |
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4372 if (key in b and key != 'PatientSex'): |
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4373 self.assertNotEqual(a[key], b[key]) |
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4374 |
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4375 for key in tags['MainDicomTags']: |
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4376 # Not in the patient/study module |
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4377 if (not key in [ 'InstitutionName', |
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4378 'RequestingPhysician', |
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4379 'RequestedProcedureDescription', ]): |
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4380 self.assertEqual(a[key], merged[key]) |
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4381 if (key in b): |
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4382 self.assertNotEqual(a[key], b[key]) |
254
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4383 |
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4384 sopInstanceUids = set() |
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4385 for i in DoGet(_REMOTE, '/instances?expand'): |
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4386 sopInstanceUids.add(i['MainDicomTags']['SOPInstanceUID']) |
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4387 |
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4388 self.assertTrue(kneeSop in sopInstanceUids) |
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4389 self.assertTrue(brainixSop in sopInstanceUids) |
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4390 |
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4391 # Fails if Orthanc <= 1.5.7 |
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4392 # The 2 original instances are kept, another one is added because of the merge |
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4393 self.assertEqual(3, len(sopInstanceUids)) |
179
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4394 |
187 | 4395 |
4396 def test_async_archive(self): | |
4397 # Testing the asynchronous generation of archives/medias (new | |
4398 # in Orthanc 1.4.3) | |
4399 UploadInstance(_REMOTE, 'Knee/T1/IM-0001-0001.dcm') | |
4400 UploadInstance(_REMOTE, 'Knee/T2/IM-0001-0001.dcm') | |
4401 | |
4402 kneeT1 = '6de73705-c4e65c1b-9d9ea1b5-cabcd8e7-f15e4285' | |
4403 kneeT2 = 'bbf7a453-0d34251a-03663b55-46bb31b9-ffd74c59' | |
4404 | |
4405 job = MonitorJob2(_REMOTE, lambda: DoPost | |
4406 (_REMOTE, '/studies/%s/archive' % kneeT1, { | |
4407 'Synchronous' : False | |
4408 })) | |
4409 | |
4410 z = GetArchive(_REMOTE, '/jobs/%s/archive' % job) | |
4411 self.assertEqual(1, len(z.namelist())) | |
4412 self.assertFalse('DICOMDIR' in z.namelist()) | |
4413 | |
354
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4414 info = DoGet(_REMOTE, '/jobs/%s' % job) |
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4415 self.assertEqual(0, info['Content']['ArchiveSizeMB']) # New in Orthanc 1.8.1 |
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4416 self.assertEqual(1, info['Content']['InstancesCount']) |
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4417 self.assertEqual(0, info['Content']['UncompressedSizeMB']) |
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4418 |
187 | 4419 job2 = MonitorJob2(_REMOTE, lambda: DoPost |
4420 (_REMOTE, '/studies/%s/media' % kneeT1, { | |
4421 'Synchronous' : False | |
4422 })) | |
4423 | |
4424 # The archive from the first job has been replaced by the | |
4425 # archive from second job (as MediaArchiveSize == 1) | |
4426 self.assertRaises(Exception, lambda: GetArchive(_REMOTE, '/jobs/%s/archive' % job)) | |
4427 | |
4428 z = GetArchive(_REMOTE, '/jobs/%s/archive' % job2) | |
4429 self.assertEqual(2, len(z.namelist())) | |
4430 self.assertTrue('DICOMDIR' in z.namelist()) | |
4431 | |
354
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4432 info = DoGet(_REMOTE, '/jobs/%s' % job2) |
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4433 self.assertEqual(0, info['Content']['ArchiveSizeMB']) # New in Orthanc 1.8.1 |
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4434 self.assertEqual(1, info['Content']['InstancesCount']) |
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4435 self.assertEqual(0, info['Content']['UncompressedSizeMB']) |
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4436 |
187 | 4437 job = MonitorJob2(_REMOTE, lambda: DoPost |
4438 (_REMOTE, '/tools/create-archive', { | |
4439 'Synchronous' : False, | |
4440 'Resources' : [ kneeT1, kneeT2 ], | |
4441 })) | |
4442 | |
4443 z = GetArchive(_REMOTE, '/jobs/%s/archive' % job) | |
4444 self.assertEqual(2, len(z.namelist())) | |
4445 self.assertFalse('DICOMDIR' in z.namelist()) | |
4446 | |
354
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4447 info = DoGet(_REMOTE, '/jobs/%s' % job) |
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4448 self.assertEqual(0, info['Content']['ArchiveSizeMB']) # New in Orthanc 1.8.1 |
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4449 self.assertEqual(2, info['Content']['InstancesCount']) |
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4450 self.assertEqual(0, info['Content']['UncompressedSizeMB']) |
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4451 |
187 | 4452 job = MonitorJob2(_REMOTE, lambda: DoPost |
4453 (_REMOTE, '/tools/create-media', { | |
4454 'Synchronous' : False, | |
4455 'Resources' : [ kneeT1, kneeT2 ], | |
4456 })) | |
4457 | |
4458 z = GetArchive(_REMOTE, '/jobs/%s/archive' % job) | |
4459 self.assertEqual(3, len(z.namelist())) | |
4460 self.assertTrue('DICOMDIR' in z.namelist()) | |
188
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4461 |
354
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4462 self.assertEqual(0, info['Content']['ArchiveSizeMB']) # New in Orthanc 1.8.1 |
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4463 self.assertEqual(2, info['Content']['InstancesCount']) |
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4464 self.assertEqual(0, info['Content']['UncompressedSizeMB']) |
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4465 |
187 | 4466 |
188
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4467 def test_queries_hierarchy(self): |
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4468 UploadInstance(_REMOTE, 'Knee/T1/IM-0001-0001.dcm') |
189
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4469 UploadInstance(_REMOTE, 'Brainix/Flair/IM-0001-0001.dcm') |
188
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4470 |
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4471 tags = { |
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4472 'NumberOfPatientRelatedInstances' : '', |
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4473 'NumberOfPatientRelatedSeries' : '', |
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4474 'NumberOfPatientRelatedStudies' : '', |
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4475 'NumberOfStudyRelatedInstances' : '', |
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4476 'NumberOfStudyRelatedSeries' : '', |
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4477 'NumberOfSeriesRelatedInstances' : '', |
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4478 } |
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4479 |
189
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4480 tags2 = copy.copy(tags) |
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4481 tags2['PatientID'] = '887' # Only consider the "Knee" patient |
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4482 |
188
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4483 patient = DoPost(_REMOTE, '/modalities/self/query', { |
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4484 'Level' : 'Patient', |
189
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4485 'Query' : tags2 |
188
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4486 }) ['ID'] |
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4487 |
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4488 study = DoPost(_REMOTE, '/modalities/self/query', { |
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4489 'Level' : 'Study', |
189
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changeset
|
4490 'Query' : tags2 |
188
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4491 }) ['ID'] |
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4492 |
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|
4493 series = DoPost(_REMOTE, '/modalities/self/query', { |
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changeset
|
4494 'Level' : 'Series', |
189
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test_dicom_disk_size
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diff
changeset
|
4495 'Query' : tags2 |
188
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changeset
|
4496 }) ['ID'] |
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diff
changeset
|
4497 |
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diff
changeset
|
4498 instance = DoPost(_REMOTE, '/modalities/self/query', { |
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changeset
|
4499 'Level' : 'Instance', |
189
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test_dicom_disk_size
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diff
changeset
|
4500 'Query' : tags2 |
188
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diff
changeset
|
4501 }) ['ID'] |
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4502 |
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4503 p = DoGet(_REMOTE, '/queries/%s/answers?expand&simplify' % patient) |
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|
4504 self.assertEqual(1, len(p)) |
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4505 self.assertEqual('887', p[0]['PatientID']) |
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|
4506 self.assertEqual('1', p[0]['NumberOfPatientRelatedInstances']) |
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|
4507 self.assertEqual('1', p[0]['NumberOfPatientRelatedSeries']) |
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4508 self.assertEqual('1', p[0]['NumberOfPatientRelatedStudies']) |
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|
4509 self.assertFalse('NumberOfStudyRelatedInstances' in p[0]) |
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|
4510 self.assertFalse('NumberOfStudyRelatedSeries' in p[0]) |
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changeset
|
4511 self.assertFalse('NumberOfSeriesRelatedInstances' in p[0]) |
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4512 |
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changeset
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4513 p = DoGet(_REMOTE, '/queries/%s/answers?expand&simplify' % study) |
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4514 self.assertEqual(1, len(p)) |
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4515 self.assertEqual('2.16.840.1.113669.632.20.121711.10000160881', p[0]['StudyInstanceUID']) |
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4516 self.assertEqual('1', p[0]['NumberOfStudyRelatedInstances']) |
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4517 self.assertEqual('1', p[0]['NumberOfStudyRelatedSeries']) |
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changeset
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4518 self.assertFalse('NumberOfPatientRelatedInstances' in p[0]) |
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|
4519 self.assertFalse('NumberOfPatientRelatedSeries' in p[0]) |
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4520 self.assertFalse('NumberOfPatientRelatedInstances' in p[0]) |
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changeset
|
4521 self.assertFalse('NumberOfSeriesRelatedInstances' in p[0]) |
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4522 |
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changeset
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4523 p = DoGet(_REMOTE, '/queries/%s/answers?expand&simplify' % series) |
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4524 self.assertEqual(1, len(p)) |
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4525 self.assertEqual('1.3.46.670589.11.17521.5.0.3124.2008081908564160709', p[0]['SeriesInstanceUID']) |
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changeset
|
4526 self.assertEqual('1', p[0]['NumberOfSeriesRelatedInstances']) |
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diff
changeset
|
4527 self.assertFalse('NumberOfPatientRelatedInstances' in p[0]) |
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diff
changeset
|
4528 self.assertFalse('NumberOfPatientRelatedSeries' in p[0]) |
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diff
changeset
|
4529 self.assertFalse('NumberOfPatientRelatedInstances' in p[0]) |
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diff
changeset
|
4530 self.assertFalse('NumberOfStudyRelatedInstances' in p[0]) |
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diff
changeset
|
4531 self.assertFalse('NumberOfStudyRelatedSeries' in p[0]) |
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diff
changeset
|
4532 |
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diff
changeset
|
4533 p = DoGet(_REMOTE, '/queries/%s/answers?expand&simplify' % instance) |
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diff
changeset
|
4534 self.assertEqual(1, len(p)) |
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4535 self.assertEqual('1.3.46.670589.11.17521.5.0.3124.2008081908590448738', p[0]['SOPInstanceUID']) |
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diff
changeset
|
4536 |
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diff
changeset
|
4537 j = DoPost(_REMOTE, '/queries/%s/answers/0/query-studies' % patient, |
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diff
changeset
|
4538 { 'Query' : tags }) ['ID'] |
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diff
changeset
|
4539 self.assertEqual(DoGet(_REMOTE, '/queries/%s/answers?expand&simplify' % j), |
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diff
changeset
|
4540 DoGet(_REMOTE, '/queries/%s/answers?expand&simplify' % study)) |
189
11719f19bd62
test_dicom_disk_size
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188
diff
changeset
|
4541 |
188
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diff
changeset
|
4542 j = DoPost(_REMOTE, '/queries/%s/answers/0/query-series' % patient, |
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diff
changeset
|
4543 { 'Query' : tags }) ['ID'] |
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diff
changeset
|
4544 self.assertEqual(DoGet(_REMOTE, '/queries/%s/answers?expand&simplify' % j), |
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diff
changeset
|
4545 DoGet(_REMOTE, '/queries/%s/answers?expand&simplify' % series)) |
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diff
changeset
|
4546 |
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diff
changeset
|
4547 j = DoPost(_REMOTE, '/queries/%s/answers/0/query-instances' % patient, |
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diff
changeset
|
4548 { 'Query' : tags }) ['ID'] |
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diff
changeset
|
4549 self.assertEqual(DoGet(_REMOTE, '/queries/%s/answers?expand&simplify' % j), |
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diff
changeset
|
4550 DoGet(_REMOTE, '/queries/%s/answers?expand&simplify' % instance)) |
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diff
changeset
|
4551 |
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diff
changeset
|
4552 j = DoPost(_REMOTE, '/queries/%s/answers/0/query-series' % study, |
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diff
changeset
|
4553 { 'Query' : tags }) ['ID'] |
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diff
changeset
|
4554 self.assertEqual(DoGet(_REMOTE, '/queries/%s/answers?expand&simplify' % j), |
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diff
changeset
|
4555 DoGet(_REMOTE, '/queries/%s/answers?expand&simplify' % series)) |
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diff
changeset
|
4556 |
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diff
changeset
|
4557 j = DoPost(_REMOTE, '/queries/%s/answers/0/query-instances' % study, |
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diff
changeset
|
4558 { 'Query' : tags }) ['ID'] |
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diff
changeset
|
4559 self.assertEqual(DoGet(_REMOTE, '/queries/%s/answers?expand&simplify' % j), |
7d585263808b
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diff
changeset
|
4560 DoGet(_REMOTE, '/queries/%s/answers?expand&simplify' % instance)) |
7d585263808b
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diff
changeset
|
4561 |
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diff
changeset
|
4562 j = DoPost(_REMOTE, '/queries/%s/answers/0/query-instances' % series, |
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diff
changeset
|
4563 { 'Query' : tags }) ['ID'] |
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diff
changeset
|
4564 self.assertEqual(DoGet(_REMOTE, '/queries/%s/answers?expand&simplify' % j), |
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diff
changeset
|
4565 DoGet(_REMOTE, '/queries/%s/answers?expand&simplify' % instance)) |
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diff
changeset
|
4566 |
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diff
changeset
|
4567 |
189
11719f19bd62
test_dicom_disk_size
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diff
changeset
|
4568 def test_dicom_disk_size(self): |
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|
4569 dicomSize = 0 |
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diff
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|
4570 |
379
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diff
changeset
|
4571 a = UploadInstance(_REMOTE, 'Brainix/Flair/IM-0001-0001.dcm') ['ID'] |
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fix tests if StorageCompression is true
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diff
changeset
|
4572 isCompressed = (DoGet(_REMOTE, '/instances/%s/attachments/dicom/is-compressed' % a) != 0) |
189
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test_dicom_disk_size
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diff
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|
4573 |
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test_dicom_disk_size
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diff
changeset
|
4574 for i in range(2): |
11719f19bd62
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diff
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|
4575 p = 'Knee/T%d/IM-0001-0001.dcm' % (i + 1) |
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|
4576 UploadInstance(_REMOTE, p) |
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diff
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|
4577 dicomSize += os.path.getsize(GetDatabasePath(p)) |
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diff
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|
4578 |
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test_dicom_disk_size
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diff
changeset
|
4579 s = DoGet(_REMOTE, '/patients/ca29faea-b6a0e17f-067743a1-8b778011-a48b2a17/statistics') # Consider Knee patient |
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diff
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|
4580 self.assertEqual(2, s['CountInstances']) |
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diff
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|
4581 self.assertEqual(2, s['CountSeries']) |
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diff
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|
4582 self.assertEqual(1, s['CountStudies']) |
379
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diff
changeset
|
4583 |
189
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test_dicom_disk_size
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diff
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|
4584 self.assertEqual(dicomSize, int(s['DicomUncompressedSize'])) |
379
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diff
changeset
|
4585 |
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diff
changeset
|
4586 if isCompressed: |
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diff
changeset
|
4587 self.assertGreater(dicomSize, int(s['DicomDiskSize'])) |
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diff
changeset
|
4588 self.assertGreater(s['UncompressedSize'], s['DiskSize']) |
380
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Sebastien Jodogne <s.jodogne@gmail.com>
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diff
changeset
|
4589 self.assertLess(dicomSize, int(s['UncompressedSize'])) |
379
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diff
changeset
|
4590 else: |
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diff
changeset
|
4591 self.assertEqual(dicomSize, int(s['DicomDiskSize'])) |
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diff
changeset
|
4592 self.assertEqual(s['UncompressedSize'], s['DiskSize']) |
380
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changeset
|
4593 if IsOrthancVersionAbove(_REMOTE, 1, 9, 1): |
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changeset
|
4594 if IsDicomUntilPixelDataStored(_REMOTE): |
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diff
changeset
|
4595 self.assertLess(dicomSize, int(s['UncompressedSize'])) |
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diff
changeset
|
4596 else: |
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diff
changeset
|
4597 self.assertEqual(dicomSize, int(s['UncompressedSize'])) |
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diff
changeset
|
4598 else: |
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diff
changeset
|
4599 # In Orthanc <= 1.9.0, there is the "dicom-as-json" |
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changeset
|
4600 # attachment in addition to the DICOM file |
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diff
changeset
|
4601 self.assertLess(dicomSize, int(s['UncompressedSize'])) |
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diff
changeset
|
4602 |
202
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test_changes_2 and test_bitbucket_issue_124
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diff
changeset
|
4603 |
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test_changes_2 and test_bitbucket_issue_124
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diff
changeset
|
4604 def test_changes_2(self): |
f26f9ae9c599
test_changes_2 and test_bitbucket_issue_124
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diff
changeset
|
4605 # More consistent behavior since Orthanc 1.5.2 |
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diff
changeset
|
4606 # https://groups.google.com/d/msg/orthanc-users/QhzB6vxYeZ0/YxabgqpfBAAJ |
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diff
changeset
|
4607 |
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test_changes_2 and test_bitbucket_issue_124
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diff
changeset
|
4608 # Make sure that this is not the first change |
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changeset
|
4609 self.assertEqual(0, len(DoGet(_REMOTE, '/instances'))) |
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diff
changeset
|
4610 a = UploadInstance(_REMOTE, 'DummyCT.dcm')['ID'] |
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test_changes_2 and test_bitbucket_issue_124
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diff
changeset
|
4611 self.assertEqual(1, len(DoGet(_REMOTE, '/instances'))) |
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test_changes_2 and test_bitbucket_issue_124
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changeset
|
4612 DoDelete(_REMOTE, '/instances/%s' % a) |
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test_changes_2 and test_bitbucket_issue_124
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diff
changeset
|
4613 |
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test_changes_2 and test_bitbucket_issue_124
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diff
changeset
|
4614 # No more instance, but there were previous changes |
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test_changes_2 and test_bitbucket_issue_124
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diff
changeset
|
4615 self.assertEqual(0, len(DoGet(_REMOTE, '/instances'))) |
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test_changes_2 and test_bitbucket_issue_124
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changeset
|
4616 |
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test_changes_2 and test_bitbucket_issue_124
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diff
changeset
|
4617 c = DoGet(_REMOTE, '/changes') |
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diff
changeset
|
4618 self.assertEqual(0, len(c['Changes'])) |
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diff
changeset
|
4619 self.assertTrue(c['Done']) |
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test_changes_2 and test_bitbucket_issue_124
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diff
changeset
|
4620 seq = c['Last'] |
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test_changes_2 and test_bitbucket_issue_124
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diff
changeset
|
4621 |
f26f9ae9c599
test_changes_2 and test_bitbucket_issue_124
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195
diff
changeset
|
4622 c = DoGet(_REMOTE, '/changes?last') |
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test_changes_2 and test_bitbucket_issue_124
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diff
changeset
|
4623 self.assertEqual(0, len(c['Changes'])) |
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test_changes_2 and test_bitbucket_issue_124
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diff
changeset
|
4624 self.assertTrue(c['Done']) |
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test_changes_2 and test_bitbucket_issue_124
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diff
changeset
|
4625 self.assertEqual(seq, c['Last']) |
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test_changes_2 and test_bitbucket_issue_124
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diff
changeset
|
4626 |
f26f9ae9c599
test_changes_2 and test_bitbucket_issue_124
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195
diff
changeset
|
4627 c = DoGet(_REMOTE, '/changes?since=%d' % (seq + 1000)) |
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test_changes_2 and test_bitbucket_issue_124
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diff
changeset
|
4628 self.assertEqual(0, len(c['Changes'])) |
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test_changes_2 and test_bitbucket_issue_124
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diff
changeset
|
4629 self.assertTrue(c['Done']) |
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test_changes_2 and test_bitbucket_issue_124
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diff
changeset
|
4630 self.assertEqual(seq, c['Last']) |
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test_changes_2 and test_bitbucket_issue_124
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diff
changeset
|
4631 |
f26f9ae9c599
test_changes_2 and test_bitbucket_issue_124
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diff
changeset
|
4632 # Add one instance |
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test_changes_2 and test_bitbucket_issue_124
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diff
changeset
|
4633 UploadInstance(_REMOTE, 'DummyCT.dcm') |
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test_changes_2 and test_bitbucket_issue_124
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diff
changeset
|
4634 self.assertEqual(1, len(DoGet(_REMOTE, '/instances'))) |
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test_changes_2 and test_bitbucket_issue_124
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diff
changeset
|
4635 |
f26f9ae9c599
test_changes_2 and test_bitbucket_issue_124
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195
diff
changeset
|
4636 c = DoGet(_REMOTE, '/changes') |
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test_changes_2 and test_bitbucket_issue_124
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diff
changeset
|
4637 self.assertEqual(4, len(c['Changes'])) |
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test_changes_2 and test_bitbucket_issue_124
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diff
changeset
|
4638 self.assertTrue(c['Done']) |
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test_changes_2 and test_bitbucket_issue_124
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diff
changeset
|
4639 self.assertEqual(seq + 4, c['Last']) |
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test_changes_2 and test_bitbucket_issue_124
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diff
changeset
|
4640 |
f26f9ae9c599
test_changes_2 and test_bitbucket_issue_124
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195
diff
changeset
|
4641 c = DoGet(_REMOTE, '/changes?last') |
f26f9ae9c599
test_changes_2 and test_bitbucket_issue_124
Sebastien Jodogne <s.jodogne@gmail.com>
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diff
changeset
|
4642 self.assertEqual(1, len(c['Changes'])) |
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test_changes_2 and test_bitbucket_issue_124
Sebastien Jodogne <s.jodogne@gmail.com>
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diff
changeset
|
4643 self.assertTrue(c['Done']) |
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test_changes_2 and test_bitbucket_issue_124
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diff
changeset
|
4644 self.assertEqual(seq + 4, c['Last']) |
f26f9ae9c599
test_changes_2 and test_bitbucket_issue_124
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diff
changeset
|
4645 |
f26f9ae9c599
test_changes_2 and test_bitbucket_issue_124
Sebastien Jodogne <s.jodogne@gmail.com>
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195
diff
changeset
|
4646 c = DoGet(_REMOTE, '/changes?since=%d' % (seq + 1000)) |
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test_changes_2 and test_bitbucket_issue_124
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diff
changeset
|
4647 self.assertEqual(0, len(c['Changes'])) |
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test_changes_2 and test_bitbucket_issue_124
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diff
changeset
|
4648 self.assertTrue(c['Done']) |
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test_changes_2 and test_bitbucket_issue_124
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diff
changeset
|
4649 self.assertEqual(seq + 4, c['Last']) |
f26f9ae9c599
test_changes_2 and test_bitbucket_issue_124
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195
diff
changeset
|
4650 |
389
27e0a2fcdc85
test /changes of type UpdatedMetadata
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384
diff
changeset
|
4651 # Add, then delete, one user-defined metadata: This triggers 2 |
27e0a2fcdc85
test /changes of type UpdatedMetadata
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diff
changeset
|
4652 # changes of type "UpdatedMetadata" |
27e0a2fcdc85
test /changes of type UpdatedMetadata
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384
diff
changeset
|
4653 i = DoGet(_REMOTE, '/instances') [0] |
27e0a2fcdc85
test /changes of type UpdatedMetadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
384
diff
changeset
|
4654 DoPut(_REMOTE, '/instances/%s/metadata/4000' % i, 'hello', 'text/plain') |
391
227d9a932467
testing revisions in metadata
Sebastien Jodogne <s.jodogne@gmail.com>
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390
diff
changeset
|
4655 |
227d9a932467
testing revisions in metadata
Sebastien Jodogne <s.jodogne@gmail.com>
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390
diff
changeset
|
4656 (headers, body) = DoGetRaw(_REMOTE, '/instances/%s/metadata/4000' % i) |
227d9a932467
testing revisions in metadata
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diff
changeset
|
4657 self.assertEqual('200', headers['status']) |
227d9a932467
testing revisions in metadata
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diff
changeset
|
4658 self.assertEqual('hello', body) |
389
27e0a2fcdc85
test /changes of type UpdatedMetadata
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384
diff
changeset
|
4659 |
27e0a2fcdc85
test /changes of type UpdatedMetadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
384
diff
changeset
|
4660 c = DoGet(_REMOTE, '/changes?last') |
27e0a2fcdc85
test /changes of type UpdatedMetadata
Sebastien Jodogne <s.jodogne@gmail.com>
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384
diff
changeset
|
4661 self.assertEqual(1, len(c['Changes'])) |
27e0a2fcdc85
test /changes of type UpdatedMetadata
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384
diff
changeset
|
4662 self.assertTrue(c['Done']) |
27e0a2fcdc85
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384
diff
changeset
|
4663 self.assertEqual(seq + 5, c['Last']) |
27e0a2fcdc85
test /changes of type UpdatedMetadata
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384
diff
changeset
|
4664 self.assertEqual('UpdatedMetadata', c['Changes'][0]['ChangeType']) |
27e0a2fcdc85
test /changes of type UpdatedMetadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
384
diff
changeset
|
4665 |
391
227d9a932467
testing revisions in metadata
Sebastien Jodogne <s.jodogne@gmail.com>
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390
diff
changeset
|
4666 DoDelete(_REMOTE, '/instances/%s/metadata/4000' % i, headers = { |
227d9a932467
testing revisions in metadata
Sebastien Jodogne <s.jodogne@gmail.com>
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390
diff
changeset
|
4667 'If-Match' : headers['etag'] |
227d9a932467
testing revisions in metadata
Sebastien Jodogne <s.jodogne@gmail.com>
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390
diff
changeset
|
4668 }) |
389
27e0a2fcdc85
test /changes of type UpdatedMetadata
Sebastien Jodogne <s.jodogne@gmail.com>
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384
diff
changeset
|
4669 c = DoGet(_REMOTE, '/changes?last') |
27e0a2fcdc85
test /changes of type UpdatedMetadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
384
diff
changeset
|
4670 self.assertEqual(1, len(c['Changes'])) |
27e0a2fcdc85
test /changes of type UpdatedMetadata
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384
diff
changeset
|
4671 self.assertTrue(c['Done']) |
27e0a2fcdc85
test /changes of type UpdatedMetadata
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384
diff
changeset
|
4672 self.assertEqual(seq + 6, c['Last']) |
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test /changes of type UpdatedMetadata
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diff
changeset
|
4673 self.assertEqual('UpdatedMetadata', c['Changes'][0]['ChangeType']) |
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test /changes of type UpdatedMetadata
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diff
changeset
|
4674 |
202
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diff
changeset
|
4675 # Remove the uploaded instance |
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diff
changeset
|
4676 DoDelete(_REMOTE, '/instances/%s' % a) |
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diff
changeset
|
4677 self.assertEqual(0, len(DoGet(_REMOTE, '/instances'))) |
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changeset
|
4678 |
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diff
changeset
|
4679 c = DoGet(_REMOTE, '/changes') |
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diff
changeset
|
4680 self.assertEqual(0, len(c['Changes'])) |
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diff
changeset
|
4681 self.assertTrue(c['Done']) |
389
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diff
changeset
|
4682 self.assertEqual(seq + 6, c['Last']) |
202
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changeset
|
4683 |
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diff
changeset
|
4684 c = DoGet(_REMOTE, '/changes?last') |
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diff
changeset
|
4685 self.assertEqual(0, len(c['Changes'])) |
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diff
changeset
|
4686 self.assertTrue(c['Done']) |
389
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diff
changeset
|
4687 self.assertEqual(seq + 6, c['Last']) |
202
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changeset
|
4688 |
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test_changes_2 and test_bitbucket_issue_124
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diff
changeset
|
4689 c = DoGet(_REMOTE, '/changes?since=%d' % (seq + 1000)) |
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diff
changeset
|
4690 self.assertEqual(0, len(c['Changes'])) |
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diff
changeset
|
4691 self.assertTrue(c['Done']) |
389
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diff
changeset
|
4692 self.assertEqual(seq + 6, c['Last']) |
202
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changeset
|
4693 |
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test_changes_2 and test_bitbucket_issue_124
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diff
changeset
|
4694 |
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test_changes_2 and test_bitbucket_issue_124
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diff
changeset
|
4695 def test_bitbucket_issue_124(self): |
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test_changes_2 and test_bitbucket_issue_124
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changeset
|
4696 a = UploadInstance(_REMOTE, 'Issue124.dcm')['ID'] |
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test_changes_2 and test_bitbucket_issue_124
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|
4697 |
f26f9ae9c599
test_changes_2 and test_bitbucket_issue_124
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parents:
195
diff
changeset
|
4698 z = GetArchive(_REMOTE, '/patients/%s/media' % a) |
f26f9ae9c599
test_changes_2 and test_bitbucket_issue_124
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diff
changeset
|
4699 self.assertEqual(2, len(z.namelist())) |
207
a515eec74078
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parents:
202
diff
changeset
|
4700 |
a515eec74078
test_invalid_findscp
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parents:
202
diff
changeset
|
4701 |
a515eec74078
test_invalid_findscp
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
202
diff
changeset
|
4702 def test_invalid_findscp(self): |
a515eec74078
test_invalid_findscp
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
202
diff
changeset
|
4703 UploadInstance(_REMOTE, 'DummyCT.dcm') |
a515eec74078
test_invalid_findscp
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parents:
202
diff
changeset
|
4704 findscu = CallFindScu([ '-S', '-k', '8,52=IMAGE', '-k', '8,16', '-k', '2,2' ]) |
a515eec74078
test_invalid_findscp
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parents:
202
diff
changeset
|
4705 self.assertEqual(0, len(re.findall('\(0002,0002\)', findscu))) |
208
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test_bitbucket_issue_90
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parents:
207
diff
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|
4706 |
2444c9a7c422
test_bitbucket_issue_90
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
207
diff
changeset
|
4707 |
2444c9a7c422
test_bitbucket_issue_90
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
207
diff
changeset
|
4708 def test_bitbucket_issue_90(self): |
2444c9a7c422
test_bitbucket_issue_90
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
207
diff
changeset
|
4709 def CountDicomResults(sex): |
2444c9a7c422
test_bitbucket_issue_90
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
207
diff
changeset
|
4710 a = CallFindScu([ '-S', '-k', '8,52=STUDY', '-k', sex ]) |
2444c9a7c422
test_bitbucket_issue_90
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
207
diff
changeset
|
4711 return len(re.findall('\(0010,0040\)', a)) |
2444c9a7c422
test_bitbucket_issue_90
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
207
diff
changeset
|
4712 |
2444c9a7c422
test_bitbucket_issue_90
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
207
diff
changeset
|
4713 def CountRestResults(sex): |
2444c9a7c422
test_bitbucket_issue_90
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
207
diff
changeset
|
4714 a = DoPost(_REMOTE, '/tools/find', |
2444c9a7c422
test_bitbucket_issue_90
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
207
diff
changeset
|
4715 { 'Level' : 'Study', 'Query' : { 'PatientSex' : sex } }) |
2444c9a7c422
test_bitbucket_issue_90
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
207
diff
changeset
|
4716 return len(a) |
2444c9a7c422
test_bitbucket_issue_90
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
207
diff
changeset
|
4717 |
2444c9a7c422
test_bitbucket_issue_90
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
207
diff
changeset
|
4718 # Just like the "CR000000.dcm" of the issue, the test image |
2444c9a7c422
test_bitbucket_issue_90
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parents:
207
diff
changeset
|
4719 # "DummyCT.dcm" has the tag PatientSex (0010,0040) unset |
2444c9a7c422
test_bitbucket_issue_90
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
207
diff
changeset
|
4720 UploadInstance(_REMOTE, 'DummyCT.dcm') |
2444c9a7c422
test_bitbucket_issue_90
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
207
diff
changeset
|
4721 |
2444c9a7c422
test_bitbucket_issue_90
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
207
diff
changeset
|
4722 # Test that the behavior of DICOM vs. REST API is consistent on missing tags |
2444c9a7c422
test_bitbucket_issue_90
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
207
diff
changeset
|
4723 |
2444c9a7c422
test_bitbucket_issue_90
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
207
diff
changeset
|
4724 # In wildcard constraints, the patient sex must be set for a match to occur |
2444c9a7c422
test_bitbucket_issue_90
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
207
diff
changeset
|
4725 self.assertEqual(0, CountDicomResults('PatientSex=*')) |
2444c9a7c422
test_bitbucket_issue_90
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
207
diff
changeset
|
4726 self.assertEqual(0, CountRestResults('*')) |
2444c9a7c422
test_bitbucket_issue_90
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
207
diff
changeset
|
4727 |
2444c9a7c422
test_bitbucket_issue_90
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
207
diff
changeset
|
4728 # In single-valued constraints, the patient sex must be set |
2444c9a7c422
test_bitbucket_issue_90
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
207
diff
changeset
|
4729 self.assertEqual(0, CountDicomResults('PatientSex=F')) |
2444c9a7c422
test_bitbucket_issue_90
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
207
diff
changeset
|
4730 self.assertEqual(0, CountDicomResults('PatientSex=M')) |
2444c9a7c422
test_bitbucket_issue_90
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
207
diff
changeset
|
4731 self.assertEqual(0, CountRestResults('F')) |
2444c9a7c422
test_bitbucket_issue_90
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
207
diff
changeset
|
4732 self.assertEqual(0, CountRestResults('M')) |
2444c9a7c422
test_bitbucket_issue_90
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
207
diff
changeset
|
4733 |
2444c9a7c422
test_bitbucket_issue_90
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
207
diff
changeset
|
4734 # Empty constraints are only used to ask the actual value of |
2444c9a7c422
test_bitbucket_issue_90
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
207
diff
changeset
|
4735 # the tag to be added to the *answer*. The tag should not used |
2444c9a7c422
test_bitbucket_issue_90
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
207
diff
changeset
|
4736 # as a filter in such a situation. |
2444c9a7c422
test_bitbucket_issue_90
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
207
diff
changeset
|
4737 self.assertEqual(1, CountDicomResults('PatientSex')) |
2444c9a7c422
test_bitbucket_issue_90
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
207
diff
changeset
|
4738 self.assertEqual(1, CountDicomResults('PatientSex=')) |
2444c9a7c422
test_bitbucket_issue_90
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
207
diff
changeset
|
4739 self.assertEqual(1, CountRestResults('')) # This check fails on Orthanc <= 1.5.2 (issue 90) |
210
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test_rest_modalities_in_study
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parents:
208
diff
changeset
|
4740 |
2c50c8f340c2
test_rest_modalities_in_study
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parents:
208
diff
changeset
|
4741 |
2c50c8f340c2
test_rest_modalities_in_study
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parents:
208
diff
changeset
|
4742 def test_rest_modalities_in_study(self): |
2c50c8f340c2
test_rest_modalities_in_study
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parents:
208
diff
changeset
|
4743 # Tests a regression that is present in Orthanc 1.5.2 and 1.5.3 |
2c50c8f340c2
test_rest_modalities_in_study
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parents:
208
diff
changeset
|
4744 # https://groups.google.com/d/msg/orthanc-users/7lZyG3wpx-M/uOXzAzVCFwAJ |
2c50c8f340c2
test_rest_modalities_in_study
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parents:
208
diff
changeset
|
4745 UploadInstance(_REMOTE, 'ColorTestImageJ.dcm') |
2c50c8f340c2
test_rest_modalities_in_study
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
208
diff
changeset
|
4746 |
2c50c8f340c2
test_rest_modalities_in_study
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parents:
208
diff
changeset
|
4747 a = DoPost(_REMOTE, '/tools/find', { 'Level' : 'Study', |
2c50c8f340c2
test_rest_modalities_in_study
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
208
diff
changeset
|
4748 'Query' : { 'ModalitiesInStudy' : 'US' }}) |
2c50c8f340c2
test_rest_modalities_in_study
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
208
diff
changeset
|
4749 self.assertEqual(0, len(a)) |
2c50c8f340c2
test_rest_modalities_in_study
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
208
diff
changeset
|
4750 |
2c50c8f340c2
test_rest_modalities_in_study
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
208
diff
changeset
|
4751 a = DoPost(_REMOTE, '/tools/find', { 'Level' : 'Study', |
2c50c8f340c2
test_rest_modalities_in_study
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
208
diff
changeset
|
4752 'Query' : { 'ModalitiesInStudy' : 'US\\CT' }}) |
2c50c8f340c2
test_rest_modalities_in_study
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
208
diff
changeset
|
4753 self.assertEqual(1, len(a)) |
2c50c8f340c2
test_rest_modalities_in_study
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
208
diff
changeset
|
4754 |
2c50c8f340c2
test_rest_modalities_in_study
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
208
diff
changeset
|
4755 a = DoPost(_REMOTE, '/tools/find', { 'Level' : 'Study', |
2c50c8f340c2
test_rest_modalities_in_study
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
208
diff
changeset
|
4756 'Query' : { 'ModalitiesInStudy' : 'CT' }}) |
2c50c8f340c2
test_rest_modalities_in_study
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parents:
208
diff
changeset
|
4757 self.assertEqual(1, len(a)) |
211 | 4758 |
4759 | |
4760 def test_series_status(self): | |
4761 def HasCompletedInChanges(): | |
4762 for c in DoGet(_REMOTE, '/changes?limit=1000&since=0')['Changes']: | |
4763 if c['ChangeType'] == 'CompletedSeries': | |
4764 return True; | |
4765 | |
4766 return False | |
4767 | |
4768 UploadInstance(_REMOTE, 'Knix/Loc/IM-0001-0001.dcm') | |
4769 series = '8ea120d7-5057d919-837dfbcc-ccd04e0f-7f3a94aa' | |
4770 self.assertEqual('Unknown', DoGet(_REMOTE, '/series/%s' % series)['Status']) | |
4771 self.assertFalse(HasCompletedInChanges()) | |
4772 | |
4773 series = 'ce25ecb6-ed79d004-5ae43ca7-3fc89bc5-67511614' | |
4774 | |
4775 for i in range(3): | |
4776 UploadInstance(_REMOTE, 'Series/Lena-%d.dcm' % (i + 1)) | |
4777 self.assertEqual('Missing', DoGet(_REMOTE, '/series/%s' % series)['Status']) | |
4778 self.assertFalse(HasCompletedInChanges()) | |
4779 | |
4780 UploadInstance(_REMOTE, 'Series/Lena-4.dcm') | |
4781 self.assertEqual('Complete', DoGet(_REMOTE, '/series/%s' % series)['Status']) | |
4782 self.assertTrue(HasCompletedInChanges()) | |
4783 | |
4784 DoDelete(_REMOTE, '/changes') | |
4785 self.assertFalse(HasCompletedInChanges()) | |
4786 | |
4787 UploadInstance(_REMOTE, 'Series/Lena-5.dcm') | |
4788 self.assertEqual('Inconsistent', DoGet(_REMOTE, '/series/%s' % series)['Status']) | |
4789 self.assertFalse(HasCompletedInChanges()) | |
4790 | |
215 | 4791 |
4792 def test_dicomweb(self): | |
4793 def Compare(dicom, reference): | |
4794 a = UploadInstance(_REMOTE, dicom) ['ID'] | |
4795 b = DoGet(_REMOTE, '/instances/%s/file' % a, | |
4796 headers = { 'Accept' : 'application/dicom+json' }) | |
4797 with open(GetDatabasePath(reference), 'rb') as c: | |
4798 d = json.load(c) | |
220 | 4799 AssertAlmostEqualRecursive(self, d, b) |
215 | 4800 |
4801 Compare('DummyCT.dcm', 'DummyCT.json') | |
4802 Compare('MarekLatin2.dcm', 'MarekLatin2.json') | |
4803 Compare('HierarchicalAnonymization/StructuredReports/IM0', | |
4804 'HierarchicalAnonymization/StructuredReports/IM0.json') | |
217 | 4805 |
4806 | |
4807 def test_issue_95_encodings(self): | |
319 | 4808 # https://bugs.orthanc-server.com/show_bug.cgi?id=95 |
217 | 4809 # Check out image: "../Database/Encodings/DavidClunie/charsettests.screenshot.png" |
4810 | |
4811 # Very useful tool: "file2" from package "file-kanji" | |
4812 | |
4813 def GetPatientName(dicom): | |
4814 i = UploadInstance(_REMOTE, dicom) ['ID'] | |
4815 j = DoGet(_REMOTE, '/instances/%s/tags?simplify' % i) | |
4816 return j['PatientName'] | |
4817 | |
4818 def ComparePatientName(name, dicom): | |
4819 self.assertEqual(name, GetPatientName(dicom)) | |
4820 | |
4821 # gdcmraw -t 10,10 -i SCSFREN -o /tmp/tag && uconv -f ISO-IR-100 -t UTF-8 /tmp/tag && echo | |
4822 ComparePatientName(u'Buc^Jérôme', 'Encodings/DavidClunie/SCSFREN') | |
4823 | |
4824 # gdcmraw -t 10,10 -i SCSI2 -o /tmp/tag && uconv -f KOREAN -t UTF-8 /tmp/tag && echo | |
4825 ComparePatientName(u'Hong^Gildong=洪^吉洞=홍^길동', 'Encodings/DavidClunie/SCSI2') # Since Orthanc 1.5.5 | |
4826 | |
4827 # gdcmraw -t 10,10 -i SCSX2 -o /tmp/tag && uconv -f GB18030 -t UTF-8 /tmp/tag && echo | |
4828 ComparePatientName(u'Wang^XiaoDong=王^小东=', 'Encodings/DavidClunie/SCSX2') | |
4829 | |
4830 # gdcmraw -t 10,10 -i SCSX1 -o /tmp/tag && cat /tmp/tag && echo | |
4831 ComparePatientName(u'Wang^XiaoDong=王^小東=', 'Encodings/DavidClunie/SCSX1') | |
4832 | |
4833 # gdcmraw -t 10,10 -i SCSH31 -o /tmp/tag && uconv -f JIS -t UTF-8 /tmp/tag && echo | |
4834 ComparePatientName(u'Yamada^Tarou=山田^太郎=やまだ^たろう', 'Encodings/DavidClunie/SCSH31') | |
4835 | |
4836 # gdcmraw -t 10,10 -i SCSGERM -o /tmp/tag && uconv -f ISO-IR-100 -t UTF-8 /tmp/tag && echo | |
4837 ComparePatientName(u'Äneas^Rüdiger', 'Encodings/DavidClunie/SCSGERM') | |
4838 | |
4839 # gdcmraw -t 10,10 -i SCSGREEK -o /tmp/tag && uconv -f ISO-IR-126 -t UTF-8 /tmp/tag && echo | |
4840 ComparePatientName(u'Διονυσιος', 'Encodings/DavidClunie/SCSGREEK') | |
4841 | |
4842 # gdcmraw -t 10,10 -i SCSRUSS -o /tmp/tag && uconv -f ISO-IR-144 -t UTF-8 /tmp/tag && echo | |
4843 ComparePatientName(u'Люкceмбypг', 'Encodings/DavidClunie/SCSRUSS') | |
4844 | |
4845 # gdcmraw -t 10,10 -i SCSHBRW -o /tmp/tag && uconv -f ISO-IR-138 -t UTF-8 /tmp/tag && echo | |
4846 # NB: Hebrew is a right-to-left encoding, copying/pasting from | |
4847 # Linux console into Emacs automatically reverse the string | |
4848 ComparePatientName(u'שרון^דבורה', 'Encodings/DavidClunie/SCSHBRW') | |
4849 | |
4850 # gdcmraw -t 10,10 -i SCSARAB -o /tmp/tag && uconv -f ISO-IR-127 -t UTF-8 /tmp/tag && echo | |
4851 # NB: Right-to-left as for Hebrew (SCSHBRW), and the Ubuntu console can't display such | |
4852 # characters by default, but copy/paste works with Emacs | |
4853 ComparePatientName(u'قباني^لنزار', 'Encodings/DavidClunie/SCSARAB') | |
4854 | |
4855 # SCSH32: This SpecificCharacterSet is composed of 2 | |
4856 # codepages: "ISO 2022 IR 13" (i.e. "SHIFT_JIS") until the | |
4857 # first equal, then "ISO 2022 IR 87" (i.e. "JIS") for the | |
4858 # remainer. Orthanc only takes into consideration the first | |
4859 # codepage: This is a limitation. | |
4860 # gdcmraw -t 10,10 -i SCSH32 -o /tmp/tag && cut -d '=' -f 1 /tmp/tag | uconv -f SHIFT_JIS -t UTF-8 | |
4861 self.assertTrue(GetPatientName('Encodings/DavidClunie/SCSH32').startswith(u'ヤマダ^タロウ=')) | |
218
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diff
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|
4862 |
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test_findscu_missing_tags
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diff
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|
4863 |
70fba41776be
test_findscu_missing_tags
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diff
changeset
|
4864 def test_findscu_missing_tags(self): |
70fba41776be
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217
diff
changeset
|
4865 # dcmodify -e Rows DummyCTInvalidRows.dcm -gst -gse -gin |
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diff
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|
4866 UploadInstance(_REMOTE, 'DummyCT.dcm') |
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217
diff
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|
4867 UploadInstance(_REMOTE, 'DummyCTInvalidRows.dcm') |
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parents:
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diff
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|
4868 |
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diff
changeset
|
4869 i = CallFindScu([ '-k', '0008,0052=IMAGES', '-k', 'Rows', '-k', 'PatientName' ]) |
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diff
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|
4870 |
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217
diff
changeset
|
4871 # We have 2 instances... |
70fba41776be
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diff
changeset
|
4872 patientNames = re.findall('\(0010,0010\).*?\[(.*?)\]', i) |
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diff
changeset
|
4873 self.assertEqual(2, len(patientNames)) |
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diff
changeset
|
4874 self.assertEqual('KNIX', patientNames[0]) |
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217
diff
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|
4875 self.assertEqual('KNIX', patientNames[1]) |
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diff
changeset
|
4876 |
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|
4877 # ...but only 1 value for the "Rows" tag |
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|
4878 rows = re.findall('\(0028,0010\) US ([0-9]+)', i) |
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diff
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|
4879 self.assertEqual(1, len(rows)) |
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diff
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|
4880 self.assertEqual('512', rows[0]) |
219
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diff
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|
4881 |
00e5aeea33dd
test_bitbucket_issue_131
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diff
changeset
|
4882 |
00e5aeea33dd
test_bitbucket_issue_131
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diff
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|
4883 |
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test_bitbucket_issue_131
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diff
changeset
|
4884 def test_bitbucket_issue_131(self): |
00e5aeea33dd
test_bitbucket_issue_131
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diff
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|
4885 # "Orthanc PACS silently fails to C-MOVE due to duplicate |
00e5aeea33dd
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diff
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|
4886 # StudyInstanceUID in it's database." |
319 | 4887 # https://bugs.orthanc-server.com/show_bug.cgi?id=131 |
219
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diff
changeset
|
4888 |
00e5aeea33dd
test_bitbucket_issue_131
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diff
changeset
|
4889 # Insert 2 instances, with the same StudyInstanceUID, but with |
00e5aeea33dd
test_bitbucket_issue_131
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diff
changeset
|
4890 # different patient IDs. Orthanc will create 2 distincts |
00e5aeea33dd
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diff
changeset
|
4891 # patients, and the hierarchy of resources above the two |
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diff
changeset
|
4892 # instances will be fully disjoint. |
00e5aeea33dd
test_bitbucket_issue_131
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218
diff
changeset
|
4893 UploadInstance(_REMOTE, 'PatientIdsCollision/Issue131-a.dcm') |
00e5aeea33dd
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218
diff
changeset
|
4894 UploadInstance(_REMOTE, 'PatientIdsCollision/Issue131-b.dcm') |
00e5aeea33dd
test_bitbucket_issue_131
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218
diff
changeset
|
4895 |
00e5aeea33dd
test_bitbucket_issue_131
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diff
changeset
|
4896 self.assertEqual(2, len(DoGet(_REMOTE, '/patients'))) |
00e5aeea33dd
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diff
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|
4897 self.assertEqual(2, len(DoGet(_REMOTE, '/studies'))) |
00e5aeea33dd
test_bitbucket_issue_131
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diff
changeset
|
4898 |
00e5aeea33dd
test_bitbucket_issue_131
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diff
changeset
|
4899 a = DoPost(_REMOTE, '/modalities/self/query', { |
00e5aeea33dd
test_bitbucket_issue_131
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218
diff
changeset
|
4900 'Level' : 'Study', |
00e5aeea33dd
test_bitbucket_issue_131
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diff
changeset
|
4901 'Query' : {"PatientID": "A" }})['ID'] |
00e5aeea33dd
test_bitbucket_issue_131
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218
diff
changeset
|
4902 |
00e5aeea33dd
test_bitbucket_issue_131
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diff
changeset
|
4903 # 1 study is matched |
00e5aeea33dd
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diff
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|
4904 self.assertEqual(1, len(DoGet(_REMOTE, '/queries/%s/answers' % a))) |
00e5aeea33dd
test_bitbucket_issue_131
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diff
changeset
|
4905 |
00e5aeea33dd
test_bitbucket_issue_131
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diff
changeset
|
4906 self.assertEqual(0, len(DoGet(_LOCAL, '/instances'))) |
220 | 4907 WaitAllNewJobsDone(_REMOTE, lambda: DoPost |
4908 (_REMOTE, '/queries/%s/retrieve' % a, | |
4909 '{"TargetAet":"ORTHANCTEST","Synchronous":false}')) | |
219
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218
diff
changeset
|
4910 |
00e5aeea33dd
test_bitbucket_issue_131
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diff
changeset
|
4911 # The two studies are matched, as we made the request at the |
00e5aeea33dd
test_bitbucket_issue_131
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diff
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|
4912 # Study level, thus the shared StudyInstanceUID is used as the key |
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diff
changeset
|
4913 self.assertEqual(2, len(DoGet(_LOCAL, '/instances'))) |
00e5aeea33dd
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diff
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|
4914 |
00e5aeea33dd
test_bitbucket_issue_131
Sebastien Jodogne <s.jodogne@gmail.com>
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218
diff
changeset
|
4915 |
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test_bitbucket_issue_131
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diff
changeset
|
4916 # Match the 2 studies |
00e5aeea33dd
test_bitbucket_issue_131
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diff
changeset
|
4917 a = DoPost(_REMOTE, '/modalities/self/query', { |
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test_bitbucket_issue_131
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218
diff
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|
4918 'Level' : 'Study', |
00e5aeea33dd
test_bitbucket_issue_131
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218
diff
changeset
|
4919 'Query' : {"StudyInstanceUID": "2.25.123" }})['ID'] |
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test_bitbucket_issue_131
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diff
changeset
|
4920 self.assertEqual(2, len(DoGet(_REMOTE, '/queries/%s/answers' % a))) |
00e5aeea33dd
test_bitbucket_issue_131
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diff
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|
4921 DropOrthanc(_LOCAL) |
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test_bitbucket_issue_131
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diff
changeset
|
4922 self.assertEqual(0, len(DoGet(_LOCAL, '/instances'))) |
220 | 4923 WaitAllNewJobsDone(_REMOTE, lambda: DoPost |
4924 (_REMOTE, '/queries/%s/retrieve' % a, | |
4925 '{"TargetAet":"ORTHANCTEST","Synchronous":false}')) | |
219
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diff
changeset
|
4926 self.assertEqual(2, len(DoGet(_LOCAL, '/instances'))) |
00e5aeea33dd
test_bitbucket_issue_131
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diff
changeset
|
4927 |
00e5aeea33dd
test_bitbucket_issue_131
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218
diff
changeset
|
4928 |
00e5aeea33dd
test_bitbucket_issue_131
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diff
changeset
|
4929 # Same test, at the patient level => only 1 instance is transfered |
00e5aeea33dd
test_bitbucket_issue_131
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218
diff
changeset
|
4930 a = DoPost(_REMOTE, '/modalities/self/query', { |
00e5aeea33dd
test_bitbucket_issue_131
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218
diff
changeset
|
4931 'Level' : 'Patient', |
00e5aeea33dd
test_bitbucket_issue_131
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parents:
218
diff
changeset
|
4932 'Query' : {"PatientID": "A" }})['ID'] |
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test_bitbucket_issue_131
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parents:
218
diff
changeset
|
4933 self.assertEqual(1, len(DoGet(_REMOTE, '/queries/%s/answers' % a))) |
00e5aeea33dd
test_bitbucket_issue_131
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parents:
218
diff
changeset
|
4934 DropOrthanc(_LOCAL) |
00e5aeea33dd
test_bitbucket_issue_131
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parents:
218
diff
changeset
|
4935 self.assertEqual(0, len(DoGet(_LOCAL, '/instances'))) |
220 | 4936 WaitAllNewJobsDone(_REMOTE, lambda: DoPost |
4937 (_REMOTE, '/queries/%s/retrieve' % a, | |
4938 '{"TargetAet":"ORTHANCTEST","Synchronous":false}')) | |
219
00e5aeea33dd
test_bitbucket_issue_131
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
218
diff
changeset
|
4939 self.assertEqual(1, len(DoGet(_LOCAL, '/instances'))) |
00e5aeea33dd
test_bitbucket_issue_131
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parents:
218
diff
changeset
|
4940 |
00e5aeea33dd
test_bitbucket_issue_131
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
218
diff
changeset
|
4941 |
00e5aeea33dd
test_bitbucket_issue_131
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
218
diff
changeset
|
4942 # Same test, at the series level => only 1 instance is transfered |
00e5aeea33dd
test_bitbucket_issue_131
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parents:
218
diff
changeset
|
4943 a = DoPost(_REMOTE, '/modalities/self/query', { |
00e5aeea33dd
test_bitbucket_issue_131
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parents:
218
diff
changeset
|
4944 'Level' : 'Series', |
00e5aeea33dd
test_bitbucket_issue_131
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parents:
218
diff
changeset
|
4945 'Query' : {"PatientID": "A" }})['ID'] |
00e5aeea33dd
test_bitbucket_issue_131
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parents:
218
diff
changeset
|
4946 self.assertEqual(1, len(DoGet(_REMOTE, '/queries/%s/answers' % a))) |
00e5aeea33dd
test_bitbucket_issue_131
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parents:
218
diff
changeset
|
4947 DropOrthanc(_LOCAL) |
00e5aeea33dd
test_bitbucket_issue_131
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parents:
218
diff
changeset
|
4948 self.assertEqual(0, len(DoGet(_LOCAL, '/instances'))) |
220 | 4949 WaitAllNewJobsDone(_REMOTE, lambda: DoPost |
4950 (_REMOTE, '/queries/%s/retrieve' % a, | |
4951 '{"TargetAet":"ORTHANCTEST","Synchronous":false}')) | |
219
00e5aeea33dd
test_bitbucket_issue_131
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parents:
218
diff
changeset
|
4952 self.assertEqual(1, len(DoGet(_LOCAL, '/instances'))) |
00e5aeea33dd
test_bitbucket_issue_131
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218
diff
changeset
|
4953 |
233
ce0b19a2c807
test_bitbucket_issue_136
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parents:
231
diff
changeset
|
4954 |
ce0b19a2c807
test_bitbucket_issue_136
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parents:
231
diff
changeset
|
4955 def test_bitbucket_issue_136(self): |
ce0b19a2c807
test_bitbucket_issue_136
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parents:
231
diff
changeset
|
4956 UploadInstance(_REMOTE, 'Issue137.dcm') |
ce0b19a2c807
test_bitbucket_issue_136
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parents:
231
diff
changeset
|
4957 i = CallFindScu([ '-k', '0008,0052=STUDY', '-k', '0010,0010', '-k', '0028,0010', '-k', '0040,0275' ]) |
ce0b19a2c807
test_bitbucket_issue_136
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
231
diff
changeset
|
4958 patientNames = re.findall('\(0010,0010\).*?\[(.*?)\]', i) |
ce0b19a2c807
test_bitbucket_issue_136
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parents:
231
diff
changeset
|
4959 self.assertEqual(1, len(patientNames)) |
ce0b19a2c807
test_bitbucket_issue_136
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parents:
231
diff
changeset
|
4960 self.assertEqual('John Doe', patientNames[0]) |
234
93cd4fdd4a67
test_anonymize_relationships_4
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parents:
233
diff
changeset
|
4961 |
93cd4fdd4a67
test_anonymize_relationships_4
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233
diff
changeset
|
4962 |
93cd4fdd4a67
test_anonymize_relationships_4
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parents:
233
diff
changeset
|
4963 def test_anonymize_relationships_4(self): |
93cd4fdd4a67
test_anonymize_relationships_4
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233
diff
changeset
|
4964 # https://groups.google.com/d/msg/orthanc-users/UkcsqyTpszE/bXUpzU0vAAAJ |
93cd4fdd4a67
test_anonymize_relationships_4
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parents:
233
diff
changeset
|
4965 sr1 = UploadInstance(_REMOTE, 'HierarchicalAnonymization/2019-03-28/CR000000.dcm')['ID'] |
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test_anonymize_relationships_4
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233
diff
changeset
|
4966 mr1 = UploadInstance(_REMOTE, 'HierarchicalAnonymization/2019-03-28/PR000000.dcm')['ID'] |
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test_anonymize_relationships_4
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233
diff
changeset
|
4967 study = '0c923249-d52121a9-2b7167f7-6b85534f-0943697e' |
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diff
changeset
|
4968 |
93cd4fdd4a67
test_anonymize_relationships_4
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233
diff
changeset
|
4969 anonymized = DoPost(_REMOTE, '/studies/%s/anonymize' % study, '{}', |
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diff
changeset
|
4970 'application/json')['ID'] |
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233
diff
changeset
|
4971 series = DoGet(_REMOTE, '/studies/%s/series' % anonymized) |
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diff
changeset
|
4972 self.assertEqual(2, len(series)) |
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diff
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|
4973 |
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test_anonymize_relationships_4
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233
diff
changeset
|
4974 cr = list(filter(lambda x: x['MainDicomTags']['Modality'] == 'CR', series)) |
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diff
changeset
|
4975 pr = list(filter(lambda x: x['MainDicomTags']['Modality'] == 'PR', series)) |
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diff
changeset
|
4976 self.assertEqual(1, len(cr)) |
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diff
changeset
|
4977 self.assertEqual(1, len(pr)) |
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diff
changeset
|
4978 self.assertEqual(1, len(cr[0]['Instances'])) |
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diff
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|
4979 self.assertEqual(1, len(pr[0]['Instances'])) |
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diff
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|
4980 |
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diff
changeset
|
4981 crinstance = DoGet(_REMOTE, '/instances/%s' % cr[0]['Instances'][0]) |
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diff
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|
4982 tags = DoGet(_REMOTE, '/instances/%s/tags?short' % pr[0]['Instances'][0]) |
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diff
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|
4983 |
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diff
changeset
|
4984 self.assertEqual(tags['0008,1115'][0]['0008,1140'][0]['0008,1155'], |
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diff
changeset
|
4985 crinstance['MainDicomTags']['SOPInstanceUID']) |
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diff
changeset
|
4986 self.assertEqual(tags['0008,1115'][0]['0008,1140'][0]['0008,1150'], |
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diff
changeset
|
4987 '1.2.840.10008.5.1.4.1.1.1') # SOP class for CR Image Storage |
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diff
changeset
|
4988 |
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diff
changeset
|
4989 # This fails on Orthanc <= 1.5.6 |
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diff
changeset
|
4990 self.assertEqual(tags['0008,1115'][0]['0020,000e'], |
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4991 cr[0]['MainDicomTags']['SeriesInstanceUID']) |
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4992 |
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4993 |
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4994 def test_anonymize_relationships_5(self): |
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4995 ct1 = UploadInstance(_REMOTE, 'HierarchicalAnonymization/RTH/CT01.dcm') |
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4996 rt1 = UploadInstance(_REMOTE, 'HierarchicalAnonymization/RTH/RT.dcm') |
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4997 oStudyId = ct1['ParentStudy'] |
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4998 oCtInstanceId = ct1['ID'] |
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4999 oRtInstanceId = rt1['ID'] |
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5000 |
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5001 oCtTags = DoGet(_REMOTE, '/instances/%s/tags?simplify' % oCtInstanceId) |
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5002 oRtTags = DoGet(_REMOTE, '/instances/%s/tags?simplify' % oRtInstanceId) |
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5003 |
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5004 # first validate the relationships in the source data |
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5005 oStudyUID = oCtTags['StudyInstanceUID'] |
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5006 oRtSeriesUID = oRtTags['SeriesInstanceUID'] |
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5007 oRtInstanceUID = oRtTags['SOPInstanceUID'] |
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5008 oRtFrameOfReferenceUID = oRtTags['ReferencedFrameOfReferenceSequence'][0]['FrameOfReferenceUID'] |
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5009 oCtSeriesUID = oCtTags['SeriesInstanceUID'] |
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5010 oCtInstanceUID = oCtTags['SOPInstanceUID'] |
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5011 oCtFrameOfReferenceUID = oCtTags['FrameOfReferenceUID'] |
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5012 |
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5013 oContourSequenceCount = len(oRtTags['ROIContourSequence'][0]['ContourSequence']) |
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5014 self.assertEqual(oCtFrameOfReferenceUID, oRtFrameOfReferenceUID) |
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5015 self.assertEqual(oStudyUID, oRtTags['ReferencedFrameOfReferenceSequence'][0]['RTReferencedStudySequence'][0]['ReferencedSOPInstanceUID']) |
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5016 self.assertEqual(oCtSeriesUID, oRtTags['ReferencedFrameOfReferenceSequence'][0]['RTReferencedStudySequence'][0]['RTReferencedSeriesSequence'][0]['SeriesInstanceUID']) |
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5017 self.assertEqual(oCtInstanceUID, oRtTags['ReferencedFrameOfReferenceSequence'][0]['RTReferencedStudySequence'][0]['RTReferencedSeriesSequence'][0]['ContourImageSequence'][0]['ReferencedSOPInstanceUID']) |
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5018 self.assertEqual(oCtInstanceUID, oRtTags['ROIContourSequence'][0]['ContourSequence'][oContourSequenceCount-1]['ContourImageSequence'][0]['ReferencedSOPInstanceUID']) |
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5019 |
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5020 ### anonymize |
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5021 |
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5022 aStudyId = DoPost(_REMOTE, '/studies/%s/anonymize' % oStudyId, '{}', |
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5023 'application/json')['ID'] |
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5024 |
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5025 ### validate |
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5026 |
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5027 aSeries = DoGet(_REMOTE, '/studies/%s/series' % aStudyId) |
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5028 self.assertEqual(2, len(aSeries)) |
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5029 |
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5030 aCt = list(filter(lambda x: x['MainDicomTags']['Modality'] == 'CT', aSeries)) |
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5031 aRt = list(filter(lambda x: x['MainDicomTags']['Modality'] == 'RTSTRUCT', aSeries)) |
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5032 aCtInstanceId = aCt[0]['Instances'][0] |
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5033 aRtInstanceId = aRt[0]['Instances'][0] |
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5034 aCtTags = DoGet(_REMOTE, '/instances/%s/tags?simplify' % aCtInstanceId) |
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5035 aRtTags = DoGet(_REMOTE, '/instances/%s/tags?simplify' % aRtInstanceId) |
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5036 |
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5037 # now validate the relationships in the anonymized data |
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5038 aStudyUID = aCtTags['StudyInstanceUID'] |
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5039 aRtSeriesUID = aRtTags['SeriesInstanceUID'] |
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5040 aRtInstanceUID = aRtTags['SOPInstanceUID'] |
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5041 aRtFrameOfReferenceUID = aRtTags['ReferencedFrameOfReferenceSequence'][0]['FrameOfReferenceUID'] |
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5042 aCtSeriesUID = aCtTags['SeriesInstanceUID'] |
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5043 aCtInstanceUID = aCtTags['SOPInstanceUID'] |
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5044 aCtFrameOfReferenceUID = aCtTags['FrameOfReferenceUID'] |
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5045 |
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5046 aContourSequenceCount = len(aRtTags['ROIContourSequence'][0]['ContourSequence']) |
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5047 # make sure all UIDs have been updated |
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5048 self.assertNotEqual(oStudyUID, aStudyUID) |
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5049 self.assertNotEqual(oRtSeriesUID, aRtSeriesUID) |
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5050 self.assertNotEqual(oRtInstanceUID, aRtInstanceUID) |
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5051 self.assertNotEqual(oRtFrameOfReferenceUID, aRtFrameOfReferenceUID) |
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5052 self.assertNotEqual(oCtSeriesUID, aCtSeriesUID) |
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5053 self.assertNotEqual(oCtInstanceUID, aCtInstanceUID) |
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5054 self.assertNotEqual(oCtFrameOfReferenceUID, aCtFrameOfReferenceUID) |
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5055 |
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5056 # validate the relationships |
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5057 self.assertEqual(oContourSequenceCount, aContourSequenceCount) |
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5058 self.assertEqual(aCtFrameOfReferenceUID, aRtFrameOfReferenceUID) |
256 | 5059 self.assertEqual(aStudyUID, aRtTags['ReferencedFrameOfReferenceSequence'][0]['RTReferencedStudySequence'][0]['ReferencedSOPInstanceUID']) |
5060 self.assertEqual(aCtSeriesUID, aRtTags['ReferencedFrameOfReferenceSequence'][0]['RTReferencedStudySequence'][0]['RTReferencedSeriesSequence'][0]['SeriesInstanceUID']) | |
255
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5061 self.assertEqual(aCtInstanceUID, aRtTags['ReferencedFrameOfReferenceSequence'][0]['RTReferencedStudySequence'][0]['RTReferencedSeriesSequence'][0]['ContourImageSequence'][0]['ReferencedSOPInstanceUID']) |
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5062 self.assertEqual(aCtInstanceUID, aRtTags['ROIContourSequence'][0]['ContourSequence'][aContourSequenceCount-1]['ContourImageSequence'][0]['ReferencedSOPInstanceUID']) |
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5063 |
256 | 5064 def test_anonymize_relationships_5b(self): |
5065 # same test as previous one but, this time, we force the StudyInstanceUID | |
5066 ct1 = UploadInstance(_REMOTE, 'HierarchicalAnonymization/RTH/CT01.dcm') | |
5067 rt1 = UploadInstance(_REMOTE, 'HierarchicalAnonymization/RTH/RT.dcm') | |
5068 oStudyId = ct1['ParentStudy'] | |
5069 oCtInstanceId = ct1['ID'] | |
5070 oRtInstanceId = rt1['ID'] | |
5071 | |
5072 oCtTags = DoGet(_REMOTE, '/instances/%s/tags?simplify' % oCtInstanceId) | |
5073 oRtTags = DoGet(_REMOTE, '/instances/%s/tags?simplify' % oRtInstanceId) | |
5074 | |
5075 ### anonymize while forcing the StudyInstanceUID | |
5076 | |
5077 aStudyId = DoPost(_REMOTE, '/studies/%s/anonymize' % oStudyId, '{ "Replace" : { "StudyInstanceUID" : "1.2.3.4"}, "Force": true}', | |
5078 'application/json')['ID'] | |
5079 | |
5080 ### validate | |
5081 | |
5082 aSeries = DoGet(_REMOTE, '/studies/%s/series' % aStudyId) | |
5083 self.assertEqual(2, len(aSeries)) | |
5084 | |
5085 aCt = list(filter(lambda x: x['MainDicomTags']['Modality'] == 'CT', aSeries)) | |
5086 aRt = list(filter(lambda x: x['MainDicomTags']['Modality'] == 'RTSTRUCT', aSeries)) | |
5087 aCtInstanceId = aCt[0]['Instances'][0] | |
5088 aRtInstanceId = aRt[0]['Instances'][0] | |
5089 aCtTags = DoGet(_REMOTE, '/instances/%s/tags?simplify' % aCtInstanceId) | |
5090 aRtTags = DoGet(_REMOTE, '/instances/%s/tags?simplify' % aRtInstanceId) | |
5091 | |
5092 self.assertEqual("1.2.3.4", aCtTags['StudyInstanceUID']) | |
5093 self.assertEqual("1.2.3.4", aRtTags['StudyInstanceUID']) | |
5094 self.assertEqual("1.2.3.4", aRtTags['ReferencedFrameOfReferenceSequence'][0]['RTReferencedStudySequence'][0]['ReferencedSOPInstanceUID']) | |
255
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5095 |
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5096 |
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5097 def test_bitbucket_issue_140(self): |
266 | 5098 # "Modifying private tags with REST API changes VR from LO to |
267 | 5099 # UN." This test fails if DCMTK <= 3.6.1 (e.g. fails on Ubuntu 16.04). |
319 | 5100 # https://bugs.orthanc-server.com/show_bug.cgi?id=140 |
235
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5101 source = UploadInstance(_REMOTE, 'Issue140.dcm') ['ID'] |
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5102 series = DoGet(_REMOTE, '/instances/%s' % source) ['ParentSeries'] |
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5103 |
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5104 target = DoPost(_REMOTE, '/series/%s/modify' % series, { |
266 | 5105 'Replace' : { 'RadioButton3' : 'aaabbbccc' }, |
5106 'PrivateCreator' : 'RadioLogic', # <= the trick is here | |
235
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5107 }, 'application/json') ['ID'] |
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5108 |
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5109 instances = DoGet(_REMOTE, '/series/%s/instances' % target) |
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5110 self.assertEqual(1, len(instances)) |
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5111 |
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5112 tags = DoGet(_REMOTE, '/instances/%s/tags' % source) |
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5113 t = tags['4321,1012'] |
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5114 self.assertEqual('String', t['Type']) |
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5115 self.assertEqual('RadioButton3', t['Name']) |
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5116 self.assertEqual('RadioLogic', t['PrivateCreator']) |
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5117 self.assertEqual('jklmopq', t['Value']) |
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5118 |
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5119 tags = DoGet(_REMOTE, '/instances/%s/tags' % instances[0]['ID']) |
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5120 t = tags['4321,1012'] |
327 | 5121 self.assertEqual('String', t['Type']) # This fails if DCMTK <= 3.6.1 |
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5122 self.assertEqual('RadioButton3', t['Name']) |
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5123 self.assertEqual('RadioLogic', t['PrivateCreator']) |
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5124 self.assertEqual('aaabbbccc', t['Value']) |
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5125 |
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5126 |
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5127 def test_find_normalize(self): |
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5128 # https://groups.google.com/d/msg/orthanc-users/AIwooGjsh94/YL28MNY4AgAJ |
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5129 |
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5130 UploadInstance(_REMOTE, 'Knee/T1/IM-0001-0001.dcm') |
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5131 |
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5132 a = DoPost(_REMOTE, '/modalities/self/query', { |
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diff
changeset
|
5133 'Level' : 'Instance', |
2de1aec255ae
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diff
changeset
|
5134 'Query' : { 'Rows' : '42' } |
2de1aec255ae
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diff
changeset
|
5135 }) ['ID'] |
2de1aec255ae
test_find_normalize
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parents:
235
diff
changeset
|
5136 |
2de1aec255ae
test_find_normalize
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235
diff
changeset
|
5137 b = DoGet(_REMOTE, '/queries/%s/answers?expand&simplify' % a) |
2de1aec255ae
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diff
changeset
|
5138 self.assertEqual(1, len(b)) |
2de1aec255ae
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235
diff
changeset
|
5139 self.assertFalse('Rows' in b[0]) |
2de1aec255ae
test_find_normalize
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parents:
235
diff
changeset
|
5140 |
2de1aec255ae
test_find_normalize
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parents:
235
diff
changeset
|
5141 a = DoPost(_REMOTE, '/modalities/self/query', { |
2de1aec255ae
test_find_normalize
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235
diff
changeset
|
5142 'Level' : 'Instance', |
2de1aec255ae
test_find_normalize
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diff
changeset
|
5143 'Query' : { 'Rows' : '42' }, |
2de1aec255ae
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235
diff
changeset
|
5144 'Normalize' : False |
2de1aec255ae
test_find_normalize
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parents:
235
diff
changeset
|
5145 }) ['ID'] |
2de1aec255ae
test_find_normalize
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parents:
235
diff
changeset
|
5146 |
2de1aec255ae
test_find_normalize
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
235
diff
changeset
|
5147 b = DoGet(_REMOTE, '/queries/%s/answers' % a) |
2de1aec255ae
test_find_normalize
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235
diff
changeset
|
5148 self.assertEqual(0, len(b)) |
2de1aec255ae
test_find_normalize
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parents:
235
diff
changeset
|
5149 |
2de1aec255ae
test_find_normalize
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parents:
235
diff
changeset
|
5150 a = DoPost(_REMOTE, '/modalities/self/query', { |
2de1aec255ae
test_find_normalize
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parents:
235
diff
changeset
|
5151 'Level' : 'Instance', |
2de1aec255ae
test_find_normalize
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235
diff
changeset
|
5152 'Query' : { 'Rows' : '512' }, |
2de1aec255ae
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diff
changeset
|
5153 'Normalize' : False |
2de1aec255ae
test_find_normalize
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235
diff
changeset
|
5154 }) ['ID'] |
2de1aec255ae
test_find_normalize
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
235
diff
changeset
|
5155 |
2de1aec255ae
test_find_normalize
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
235
diff
changeset
|
5156 b = DoGet(_REMOTE, '/queries/%s/answers?expand&simplify' % a) |
2de1aec255ae
test_find_normalize
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235
diff
changeset
|
5157 self.assertEqual(1, len(b)) |
2de1aec255ae
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diff
changeset
|
5158 self.assertTrue('Rows' in b[0]) |
2de1aec255ae
test_find_normalize
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diff
changeset
|
5159 self.assertEqual('512', b[0]['Rows']) |
237 | 5160 |
5161 a = DoPost(_REMOTE, '/modalities/self/query', { | |
5162 'Level' : 'Instance', | |
5163 'Query' : { 'Rows' : '' }, | |
5164 'Normalize' : False | |
5165 }) ['ID'] | |
5166 | |
5167 b = DoGet(_REMOTE, '/queries/%s/answers?expand&simplify' % a) | |
5168 self.assertEqual(1, len(b)) | |
5169 self.assertTrue('Rows' in b[0]) | |
5170 self.assertEqual('512', b[0]['Rows']) | |
5171 | |
5172 self.assertRaises(Exception, lambda: DoPost( | |
5173 _REMOTE, '/modalities/self/query', { | |
5174 'Level' : 'Instance', | |
5175 'Query' : { 'Rows' : '*' }, # Out-of-range value | |
5176 'Normalize' : False | |
5177 })) | |
243
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test_bitbucket_issue_141
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parents:
237
diff
changeset
|
5178 |
cccf697a4e13
test_bitbucket_issue_141
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
237
diff
changeset
|
5179 |
cccf697a4e13
test_bitbucket_issue_141
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
237
diff
changeset
|
5180 def test_bitbucket_issue_141(self): |
319 | 5181 # https://bugs.orthanc-server.com/show_bug.cgi?id=141 |
243
cccf697a4e13
test_bitbucket_issue_141
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parents:
237
diff
changeset
|
5182 a = UploadInstance(_REMOTE, 'Issue141.dcm') ['ID'] |
cccf697a4e13
test_bitbucket_issue_141
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237
diff
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|
5183 study = '494c8037-b237f263-d8f15075-c8cb2280-daf39bd1' |
cccf697a4e13
test_bitbucket_issue_141
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
237
diff
changeset
|
5184 |
cccf697a4e13
test_bitbucket_issue_141
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
237
diff
changeset
|
5185 with open(GetDatabasePath('HelloWorld.pdf'), 'rb') as f: |
cccf697a4e13
test_bitbucket_issue_141
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
237
diff
changeset
|
5186 pdf = f.read() |
cccf697a4e13
test_bitbucket_issue_141
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
237
diff
changeset
|
5187 |
cccf697a4e13
test_bitbucket_issue_141
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
237
diff
changeset
|
5188 b = DoPost(_REMOTE, '/tools/create-dicom', { |
cccf697a4e13
test_bitbucket_issue_141
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
237
diff
changeset
|
5189 'Parent' : study, |
cccf697a4e13
test_bitbucket_issue_141
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parents:
237
diff
changeset
|
5190 'Tags' : {}, |
cccf697a4e13
test_bitbucket_issue_141
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parents:
237
diff
changeset
|
5191 'Content' : 'data:application/pdf;base64,' + base64.b64encode(pdf) |
cccf697a4e13
test_bitbucket_issue_141
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
237
diff
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|
5192 }) ['ID'] |
cccf697a4e13
test_bitbucket_issue_141
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parents:
237
diff
changeset
|
5193 |
cccf697a4e13
test_bitbucket_issue_141
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
237
diff
changeset
|
5194 tagsA = DoGet(_REMOTE, '/instances/%s/tags?short' % a) |
cccf697a4e13
test_bitbucket_issue_141
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
237
diff
changeset
|
5195 tagsB = DoGet(_REMOTE, '/instances/%s/tags?short' % b) |
cccf697a4e13
test_bitbucket_issue_141
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
237
diff
changeset
|
5196 self.assertEqual(tagsA['0008,0005'], tagsB['0008,0005']) |
cccf697a4e13
test_bitbucket_issue_141
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
237
diff
changeset
|
5197 self.assertEqual(tagsA['0008,1030'], tagsB['0008,1030']) |
247
1abdab0ba0e6
test_modifying_missing_patientid
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
243
diff
changeset
|
5198 |
1abdab0ba0e6
test_modifying_missing_patientid
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
243
diff
changeset
|
5199 |
1abdab0ba0e6
test_modifying_missing_patientid
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
243
diff
changeset
|
5200 def test_modifying_missing_patientid(self): |
1abdab0ba0e6
test_modifying_missing_patientid
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
243
diff
changeset
|
5201 # https://groups.google.com/d/msg/orthanc-users/aphG_h1AHVg/rfOTtTPTAgAJ |
1abdab0ba0e6
test_modifying_missing_patientid
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
243
diff
changeset
|
5202 UploadInstance(_REMOTE, '2019-06-17-VedranZdesic.dcm') |
1abdab0ba0e6
test_modifying_missing_patientid
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parents:
243
diff
changeset
|
5203 DoPost(_REMOTE, '/studies/0c4aca1d-c107a241-6659d6aa-594c674a-a468b94a/modify', {}) |
262 | 5204 |
5205 | |
5206 def test_log_level(self): | |
319 | 5207 # https://bugs.orthanc-server.com/show_bug.cgi?id=65 |
262 | 5208 original = DoGet(_REMOTE, '/tools/log-level') |
5209 | |
5210 DoPut(_REMOTE, '/tools/log-level', 'default') | |
5211 self.assertEqual('default', DoGet(_REMOTE, '/tools/log-level')) | |
5212 DoGet(_REMOTE, '/system') | |
5213 | |
5214 DoPut(_REMOTE, '/tools/log-level', 'verbose') | |
5215 self.assertEqual('verbose', DoGet(_REMOTE, '/tools/log-level')) | |
5216 DoGet(_REMOTE, '/system') | |
5217 | |
5218 DoPut(_REMOTE, '/tools/log-level', 'trace') | |
5219 self.assertEqual('trace', DoGet(_REMOTE, '/tools/log-level')) | |
5220 DoGet(_REMOTE, '/system') | |
5221 | |
5222 self.assertRaises(Exception, lambda: DoPut(_REMOTE, '/tools/log-level', 'nope')) | |
5223 | |
5224 # Switch back to the original log level | |
5225 DoPut(_REMOTE, '/tools/log-level', original) | |
264
445f498bc1d4
test_upload_compressed
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
263
diff
changeset
|
5226 |
445f498bc1d4
test_upload_compressed
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
263
diff
changeset
|
5227 |
445f498bc1d4
test_upload_compressed
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
263
diff
changeset
|
5228 def test_upload_compressed(self): |
265 | 5229 # New in Orthanc 1.6.0 |
264
445f498bc1d4
test_upload_compressed
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
263
diff
changeset
|
5230 with open(GetDatabasePath('DummyCT.dcm.gz'), 'rb') as f: |
445f498bc1d4
test_upload_compressed
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
263
diff
changeset
|
5231 d = f.read() |
445f498bc1d4
test_upload_compressed
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263
diff
changeset
|
5232 |
445f498bc1d4
test_upload_compressed
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
263
diff
changeset
|
5233 self.assertRaises(Exception, lambda: DoPost(_REMOTE, '/instances', d, 'application/dicom')) |
445f498bc1d4
test_upload_compressed
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
263
diff
changeset
|
5234 |
445f498bc1d4
test_upload_compressed
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
263
diff
changeset
|
5235 self.assertRaises(Exception, lambda: DoPost(_REMOTE, '/instances', d, 'application/dicom', |
445f498bc1d4
test_upload_compressed
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
263
diff
changeset
|
5236 headers = { 'Content-Encoding' : 'nope' })) |
445f498bc1d4
test_upload_compressed
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
263
diff
changeset
|
5237 |
445f498bc1d4
test_upload_compressed
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
263
diff
changeset
|
5238 a = DoPost(_REMOTE, '/instances', d, 'application/dicom', |
445f498bc1d4
test_upload_compressed
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
263
diff
changeset
|
5239 headers = { 'Content-Encoding' : 'gzip' }) |
445f498bc1d4
test_upload_compressed
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
263
diff
changeset
|
5240 self.assertEqual('66a662ce-7430e543-bad44d47-0dc5a943-ec7a538d', a['ID']) |
262 | 5241 |
5242 | |
263
a2719263fd04
test_study_series_find_inconsistency
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
262
diff
changeset
|
5243 def test_study_series_find_inconsistency(self): |
a2719263fd04
test_study_series_find_inconsistency
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parents:
262
diff
changeset
|
5244 # https://groups.google.com/forum/#!topic/orthanc-users/bLv6Z11COy0 |
a2719263fd04
test_study_series_find_inconsistency
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
262
diff
changeset
|
5245 |
a2719263fd04
test_study_series_find_inconsistency
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
262
diff
changeset
|
5246 def CountAnswers(query): |
a2719263fd04
test_study_series_find_inconsistency
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
262
diff
changeset
|
5247 a = DoPost(_REMOTE, 'modalities/self/query', query) |
a2719263fd04
test_study_series_find_inconsistency
Sebastien Jodogne <s.jodogne@gmail.com>
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262
diff
changeset
|
5248 return len(DoGet(_REMOTE, '%s/answers' % a['Path'])) |
a2719263fd04
test_study_series_find_inconsistency
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
262
diff
changeset
|
5249 |
a2719263fd04
test_study_series_find_inconsistency
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
262
diff
changeset
|
5250 # This instance has "SeriesDescription" (0008,103e) tag, but no |
a2719263fd04
test_study_series_find_inconsistency
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
262
diff
changeset
|
5251 # "ProtocolName" (0018,1030). Both of those tags are part of |
a2719263fd04
test_study_series_find_inconsistency
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
262
diff
changeset
|
5252 # the "main DICOM tags" of Orthanc. |
a2719263fd04
test_study_series_find_inconsistency
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
262
diff
changeset
|
5253 UploadInstance(_REMOTE, 'Issue137.dcm') |
a2719263fd04
test_study_series_find_inconsistency
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
262
diff
changeset
|
5254 |
a2719263fd04
test_study_series_find_inconsistency
Sebastien Jodogne <s.jodogne@gmail.com>
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262
diff
changeset
|
5255 |
a2719263fd04
test_study_series_find_inconsistency
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
262
diff
changeset
|
5256 self.assertEqual(1, CountAnswers({ |
a2719263fd04
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Sebastien Jodogne <s.jodogne@gmail.com>
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262
diff
changeset
|
5257 'Level' : 'Study', |
a2719263fd04
test_study_series_find_inconsistency
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262
diff
changeset
|
5258 })) |
a2719263fd04
test_study_series_find_inconsistency
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
262
diff
changeset
|
5259 |
a2719263fd04
test_study_series_find_inconsistency
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
262
diff
changeset
|
5260 self.assertEqual(1, CountAnswers({ |
a2719263fd04
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Sebastien Jodogne <s.jodogne@gmail.com>
parents:
262
diff
changeset
|
5261 'Level' : 'Series', |
a2719263fd04
test_study_series_find_inconsistency
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
262
diff
changeset
|
5262 })) |
a2719263fd04
test_study_series_find_inconsistency
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
262
diff
changeset
|
5263 |
a2719263fd04
test_study_series_find_inconsistency
Sebastien Jodogne <s.jodogne@gmail.com>
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262
diff
changeset
|
5264 |
a2719263fd04
test_study_series_find_inconsistency
Sebastien Jodogne <s.jodogne@gmail.com>
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262
diff
changeset
|
5265 ## |
a2719263fd04
test_study_series_find_inconsistency
Sebastien Jodogne <s.jodogne@gmail.com>
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262
diff
changeset
|
5266 ## "SeriesDescription" is present, and has VR "CS" => wildcard is allowed |
a2719263fd04
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diff
changeset
|
5267 ## http://dicom.nema.org/medical/dicom/2019e/output/chtml/part04/sect_C.2.2.2.4.html |
a2719263fd04
test_study_series_find_inconsistency
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diff
changeset
|
5268 ## |
a2719263fd04
test_study_series_find_inconsistency
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diff
changeset
|
5269 |
a2719263fd04
test_study_series_find_inconsistency
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
262
diff
changeset
|
5270 # At the study level, the "SeriesDescription" tag is not allowed, but |
a2719263fd04
test_study_series_find_inconsistency
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diff
changeset
|
5271 # is wiped out by the normalization |
a2719263fd04
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Sebastien Jodogne <s.jodogne@gmail.com>
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262
diff
changeset
|
5272 self.assertEqual(0, CountAnswers({ |
a2719263fd04
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262
diff
changeset
|
5273 'Level' : 'Study', |
a2719263fd04
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diff
changeset
|
5274 'Query' : { |
a2719263fd04
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diff
changeset
|
5275 'SeriesDescription' : 'NOPE' |
a2719263fd04
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262
diff
changeset
|
5276 }, |
a2719263fd04
test_study_series_find_inconsistency
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262
diff
changeset
|
5277 'Normalize' : False |
a2719263fd04
test_study_series_find_inconsistency
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
262
diff
changeset
|
5278 })) |
a2719263fd04
test_study_series_find_inconsistency
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
262
diff
changeset
|
5279 self.assertEqual(0, CountAnswers({ |
a2719263fd04
test_study_series_find_inconsistency
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
262
diff
changeset
|
5280 # This test fails on Orthanc <= 1.5.8 |
a2719263fd04
test_study_series_find_inconsistency
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
262
diff
changeset
|
5281 'Level' : 'Study', |
a2719263fd04
test_study_series_find_inconsistency
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
262
diff
changeset
|
5282 'Query' : { |
a2719263fd04
test_study_series_find_inconsistency
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
262
diff
changeset
|
5283 'SeriesDescription' : '*' # Wildcard matching => no match, as the tag is absent |
a2719263fd04
test_study_series_find_inconsistency
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
262
diff
changeset
|
5284 }, |
a2719263fd04
test_study_series_find_inconsistency
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
262
diff
changeset
|
5285 'Normalize' : False |
a2719263fd04
test_study_series_find_inconsistency
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
262
diff
changeset
|
5286 })) |
a2719263fd04
test_study_series_find_inconsistency
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
262
diff
changeset
|
5287 self.assertEqual(1, CountAnswers({ |
a2719263fd04
test_study_series_find_inconsistency
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
262
diff
changeset
|
5288 'Level' : 'Study', |
a2719263fd04
test_study_series_find_inconsistency
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
262
diff
changeset
|
5289 'Query' : { |
a2719263fd04
test_study_series_find_inconsistency
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
262
diff
changeset
|
5290 'SeriesDescription' : 'THIS^VALUE^IS^WIPED^OUT' |
a2719263fd04
test_study_series_find_inconsistency
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
262
diff
changeset
|
5291 }, |
a2719263fd04
test_study_series_find_inconsistency
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
262
diff
changeset
|
5292 'Normalize' : True |
a2719263fd04
test_study_series_find_inconsistency
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
262
diff
changeset
|
5293 })) |
a2719263fd04
test_study_series_find_inconsistency
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
262
diff
changeset
|
5294 self.assertEqual(1, CountAnswers({ |
a2719263fd04
test_study_series_find_inconsistency
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
262
diff
changeset
|
5295 'Level' : 'Study', |
a2719263fd04
test_study_series_find_inconsistency
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
262
diff
changeset
|
5296 'Query' : { |
a2719263fd04
test_study_series_find_inconsistency
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
262
diff
changeset
|
5297 'SeriesDescription' : '*' # Matches, as wiped out by the normalization |
a2719263fd04
test_study_series_find_inconsistency
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
262
diff
changeset
|
5298 }, |
a2719263fd04
test_study_series_find_inconsistency
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
262
diff
changeset
|
5299 'Normalize' : True |
a2719263fd04
test_study_series_find_inconsistency
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
262
diff
changeset
|
5300 })) |
a2719263fd04
test_study_series_find_inconsistency
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
262
diff
changeset
|
5301 |
a2719263fd04
test_study_series_find_inconsistency
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
262
diff
changeset
|
5302 for normalize in [ True, False ]: |
a2719263fd04
test_study_series_find_inconsistency
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
262
diff
changeset
|
5303 # At the series level, the "SeriesDescription" tag is allowed, and |
a2719263fd04
test_study_series_find_inconsistency
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
262
diff
changeset
|
5304 # normalization has no effect |
a2719263fd04
test_study_series_find_inconsistency
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
262
diff
changeset
|
5305 |
a2719263fd04
test_study_series_find_inconsistency
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
262
diff
changeset
|
5306 # "Universal matching" will match all entities, including |
a2719263fd04
test_study_series_find_inconsistency
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
262
diff
changeset
|
5307 # those with the missing tag |
a2719263fd04
test_study_series_find_inconsistency
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
262
diff
changeset
|
5308 # http://dicom.nema.org/medical/dicom/2019e/output/chtml/part04/sect_C.2.2.2.3.html |
a2719263fd04
test_study_series_find_inconsistency
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
262
diff
changeset
|
5309 self.assertEqual(1, CountAnswers({ |
a2719263fd04
test_study_series_find_inconsistency
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
262
diff
changeset
|
5310 'Level' : 'Series', |
a2719263fd04
test_study_series_find_inconsistency
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
262
diff
changeset
|
5311 'Query' : { |
a2719263fd04
test_study_series_find_inconsistency
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
262
diff
changeset
|
5312 'SeriesDescription' : '' # Universal matching |
a2719263fd04
test_study_series_find_inconsistency
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
262
diff
changeset
|
5313 }, |
a2719263fd04
test_study_series_find_inconsistency
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
262
diff
changeset
|
5314 'Normalize' : normalize, |
a2719263fd04
test_study_series_find_inconsistency
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
262
diff
changeset
|
5315 })) |
a2719263fd04
test_study_series_find_inconsistency
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
262
diff
changeset
|
5316 # "Universal matching" will match all entities, including |
a2719263fd04
test_study_series_find_inconsistency
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
262
diff
changeset
|
5317 # those with the missing tag |
a2719263fd04
test_study_series_find_inconsistency
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
262
diff
changeset
|
5318 # http://dicom.nema.org/medical/dicom/2019e/output/chtml/part04/sect_C.2.2.2.3.html |
a2719263fd04
test_study_series_find_inconsistency
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
262
diff
changeset
|
5319 self.assertEqual(1, CountAnswers({ |
a2719263fd04
test_study_series_find_inconsistency
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
262
diff
changeset
|
5320 'Level' : 'Series', |
a2719263fd04
test_study_series_find_inconsistency
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
262
diff
changeset
|
5321 'Query' : { |
a2719263fd04
test_study_series_find_inconsistency
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
262
diff
changeset
|
5322 'SeriesDescription' : '*' # Wildcard matching |
a2719263fd04
test_study_series_find_inconsistency
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
262
diff
changeset
|
5323 }, |
a2719263fd04
test_study_series_find_inconsistency
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
262
diff
changeset
|
5324 'Normalize' : normalize, |
a2719263fd04
test_study_series_find_inconsistency
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
262
diff
changeset
|
5325 })) |
a2719263fd04
test_study_series_find_inconsistency
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
262
diff
changeset
|
5326 self.assertEqual(1, CountAnswers({ |
a2719263fd04
test_study_series_find_inconsistency
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
262
diff
changeset
|
5327 'Level' : 'Series', |
a2719263fd04
test_study_series_find_inconsistency
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
262
diff
changeset
|
5328 'Query' : { |
a2719263fd04
test_study_series_find_inconsistency
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
262
diff
changeset
|
5329 'SeriesDescription' : '*model*' # The actual value is "STL model: intraop Report" |
a2719263fd04
test_study_series_find_inconsistency
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
262
diff
changeset
|
5330 }, |
a2719263fd04
test_study_series_find_inconsistency
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
262
diff
changeset
|
5331 'Normalize' : normalize, |
a2719263fd04
test_study_series_find_inconsistency
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
262
diff
changeset
|
5332 })) |
a2719263fd04
test_study_series_find_inconsistency
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
262
diff
changeset
|
5333 self.assertEqual(0, CountAnswers({ |
a2719263fd04
test_study_series_find_inconsistency
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
262
diff
changeset
|
5334 'Level' : 'Series', |
a2719263fd04
test_study_series_find_inconsistency
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
262
diff
changeset
|
5335 'Query' : { |
a2719263fd04
test_study_series_find_inconsistency
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
262
diff
changeset
|
5336 'SeriesDescription' : '*MISMATCHED^VALUE*' |
a2719263fd04
test_study_series_find_inconsistency
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
262
diff
changeset
|
5337 }, |
a2719263fd04
test_study_series_find_inconsistency
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
262
diff
changeset
|
5338 'Normalize' : normalize, |
a2719263fd04
test_study_series_find_inconsistency
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
262
diff
changeset
|
5339 })) |
a2719263fd04
test_study_series_find_inconsistency
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
262
diff
changeset
|
5340 |
a2719263fd04
test_study_series_find_inconsistency
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
262
diff
changeset
|
5341 # Universal matching matches any instance, even if the |
a2719263fd04
test_study_series_find_inconsistency
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
262
diff
changeset
|
5342 # query is at the study-level, and thus if "SeriesDescription" |
a2719263fd04
test_study_series_find_inconsistency
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
262
diff
changeset
|
5343 # makes no sense |
a2719263fd04
test_study_series_find_inconsistency
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
262
diff
changeset
|
5344 self.assertEqual(1, CountAnswers({ |
a2719263fd04
test_study_series_find_inconsistency
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
262
diff
changeset
|
5345 'Level' : 'Study', |
a2719263fd04
test_study_series_find_inconsistency
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
262
diff
changeset
|
5346 'Query' : { |
a2719263fd04
test_study_series_find_inconsistency
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
262
diff
changeset
|
5347 'SeriesDescription' : '' # Universal matching |
a2719263fd04
test_study_series_find_inconsistency
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
262
diff
changeset
|
5348 }, |
a2719263fd04
test_study_series_find_inconsistency
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
262
diff
changeset
|
5349 'Normalize' : normalize, |
a2719263fd04
test_study_series_find_inconsistency
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
262
diff
changeset
|
5350 })) |
a2719263fd04
test_study_series_find_inconsistency
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
262
diff
changeset
|
5351 |
a2719263fd04
test_study_series_find_inconsistency
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
262
diff
changeset
|
5352 |
a2719263fd04
test_study_series_find_inconsistency
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
262
diff
changeset
|
5353 |
a2719263fd04
test_study_series_find_inconsistency
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
262
diff
changeset
|
5354 ## |
a2719263fd04
test_study_series_find_inconsistency
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
262
diff
changeset
|
5355 ## "ProtocolName" is absent, and has VR "CS" => wildcard is allowed |
a2719263fd04
test_study_series_find_inconsistency
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
262
diff
changeset
|
5356 ## |
a2719263fd04
test_study_series_find_inconsistency
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
262
diff
changeset
|
5357 |
a2719263fd04
test_study_series_find_inconsistency
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
262
diff
changeset
|
5358 # At the study level, the "ProtocolName" tag is not allowed, but |
a2719263fd04
test_study_series_find_inconsistency
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
262
diff
changeset
|
5359 # is wiped out by the normalization |
a2719263fd04
test_study_series_find_inconsistency
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
262
diff
changeset
|
5360 self.assertEqual(0, CountAnswers({ |
a2719263fd04
test_study_series_find_inconsistency
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
262
diff
changeset
|
5361 'Level' : 'Study', |
a2719263fd04
test_study_series_find_inconsistency
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
262
diff
changeset
|
5362 'Query' : { |
a2719263fd04
test_study_series_find_inconsistency
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
262
diff
changeset
|
5363 'ProtocolName' : 'NOPE' |
a2719263fd04
test_study_series_find_inconsistency
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
262
diff
changeset
|
5364 }, |
a2719263fd04
test_study_series_find_inconsistency
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
262
diff
changeset
|
5365 'Normalize' : False |
a2719263fd04
test_study_series_find_inconsistency
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
262
diff
changeset
|
5366 })) |
a2719263fd04
test_study_series_find_inconsistency
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
262
diff
changeset
|
5367 self.assertEqual(0, CountAnswers({ |
a2719263fd04
test_study_series_find_inconsistency
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
262
diff
changeset
|
5368 'Level' : 'Study', |
a2719263fd04
test_study_series_find_inconsistency
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
262
diff
changeset
|
5369 'Query' : { |
a2719263fd04
test_study_series_find_inconsistency
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
262
diff
changeset
|
5370 'ProtocolName' : '*' # Wildcard matching => no match, as the tag is absent |
a2719263fd04
test_study_series_find_inconsistency
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
262
diff
changeset
|
5371 }, |
a2719263fd04
test_study_series_find_inconsistency
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
262
diff
changeset
|
5372 'Normalize' : False |
a2719263fd04
test_study_series_find_inconsistency
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
262
diff
changeset
|
5373 })) |
a2719263fd04
test_study_series_find_inconsistency
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
262
diff
changeset
|
5374 self.assertEqual(1, CountAnswers({ |
a2719263fd04
test_study_series_find_inconsistency
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
262
diff
changeset
|
5375 'Level' : 'Study', |
a2719263fd04
test_study_series_find_inconsistency
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
262
diff
changeset
|
5376 'Query' : { |
a2719263fd04
test_study_series_find_inconsistency
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
262
diff
changeset
|
5377 'ProtocolName' : 'THIS^VALUE^IS^WIPED^OUT' |
a2719263fd04
test_study_series_find_inconsistency
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
262
diff
changeset
|
5378 }, |
a2719263fd04
test_study_series_find_inconsistency
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
262
diff
changeset
|
5379 'Normalize' : True |
a2719263fd04
test_study_series_find_inconsistency
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
262
diff
changeset
|
5380 })) |
a2719263fd04
test_study_series_find_inconsistency
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
262
diff
changeset
|
5381 self.assertEqual(1, CountAnswers({ |
a2719263fd04
test_study_series_find_inconsistency
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
262
diff
changeset
|
5382 'Level' : 'Study', |
a2719263fd04
test_study_series_find_inconsistency
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
262
diff
changeset
|
5383 'Query' : { |
a2719263fd04
test_study_series_find_inconsistency
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
262
diff
changeset
|
5384 'ProtocolName' : '*' # Matches, as wiped out by the normalization |
a2719263fd04
test_study_series_find_inconsistency
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
262
diff
changeset
|
5385 }, |
a2719263fd04
test_study_series_find_inconsistency
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
262
diff
changeset
|
5386 'Normalize' : True |
a2719263fd04
test_study_series_find_inconsistency
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
262
diff
changeset
|
5387 })) |
a2719263fd04
test_study_series_find_inconsistency
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
262
diff
changeset
|
5388 |
a2719263fd04
test_study_series_find_inconsistency
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
262
diff
changeset
|
5389 for normalize in [ True, False ]: |
a2719263fd04
test_study_series_find_inconsistency
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
262
diff
changeset
|
5390 # At the series level, the "ProtocolName" tag is allowed, and |
a2719263fd04
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5391 # normalization has no effect |
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5392 |
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5393 self.assertEqual(1, CountAnswers({ |
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5394 'Level' : 'Series', |
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5395 'Query' : { |
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5396 'ProtocolName' : '' # Universal matching |
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5397 }, |
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5398 'Normalize' : normalize, |
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5399 })) |
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5400 self.assertEqual(0, CountAnswers({ |
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5401 'Level' : 'Series', |
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5402 'Query' : { |
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5403 'ProtocolName' : '*' # Wildcard matching => no match, as the tag is absent |
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5404 }, |
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5405 'Normalize' : normalize, |
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|
5406 })) |
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|
5407 self.assertEqual(0, CountAnswers({ |
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5408 'Level' : 'Series', |
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|
5409 'Query' : { |
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5410 'ProtocolName' : '*MISMATCHED^VALUE*' |
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5411 }, |
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5412 'Normalize' : normalize, |
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5413 })) |
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5414 |
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5415 self.assertEqual(1, CountAnswers({ |
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5416 'Level' : 'Study', |
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5417 'Query' : { |
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5418 'ProtocolName' : '' # Universal matching |
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5419 }, |
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5420 'Normalize' : normalize, |
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5421 })) |
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5422 |
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5423 |
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5424 ## |
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5425 ## "StudyInstanceUID" is present, and has VR "UI" => wildcard is not allowed |
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5426 ## |
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5427 |
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5428 for level in [ 'Study', 'Series' ] : |
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5429 for normalize in [ True, False ]: |
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5430 self.assertEqual(1, CountAnswers({ |
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5431 'Level' : level, |
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5432 'Query' : { |
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5433 'StudyInstanceUID' : '' # Universal matching |
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5434 }, |
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5435 'Normalize' : normalize, |
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5436 })) |
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5437 self.assertEqual(0, CountAnswers({ |
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5438 'Level' : level, |
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5439 'Query' : { |
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5440 'StudyInstanceUID' : 'MISMATCHED^VALUE' |
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5441 }, |
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5442 'Normalize' : normalize, |
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|
5443 })) |
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|
5444 self.assertEqual(1, CountAnswers({ |
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5445 'Level' : level, |
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5446 'Query' : { |
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5447 'StudyInstanceUID' : '4.5.6' # This is the actual value |
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5448 }, |
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5449 'Normalize' : normalize, |
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5450 })) |
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5451 |
269 | 5452 # Wildcard matching is not allowed for this VR |
263
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5453 # This test fails on Orthanc <= 1.5.8 |
269 | 5454 self.assertRaises(Exception, lambda: CountAnswers({ |
263
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5455 'Level' : level, |
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5456 'Query' : { |
269 | 5457 'StudyInstanceUID' : '*' |
263
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5458 }, |
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5459 'Normalize' : normalize, |
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5460 })) |
265 | 5461 |
5462 | |
5463 def test_rendered(self): | |
5464 # New in Orthanc 1.6.0 | |
5465 i = UploadInstance(_REMOTE, 'ColorTestMalaterre.dcm')['ID'] | |
5466 im = GetImage(_REMOTE, '/instances/%s/rendered' % i) | |
5467 self.assertEqual("RGB", im.mode) | |
5468 self.assertEqual(41, im.size[0]) | |
5469 self.assertEqual(41, im.size[1]) | |
5470 | |
5471 # http://effbot.org/zone/pil-comparing-images.htm | |
5472 truth = Image.open(GetDatabasePath('ColorTestMalaterre.png')) | |
5473 self.assertTrue(ImageChops.difference(im, truth).getbbox() is None) | |
5474 | |
5475 im = GetImage(_REMOTE, '/instances/%s/rendered?width=10' % i) | |
5476 self.assertEqual("RGB", im.mode) | |
5477 self.assertEqual(10, im.size[0]) | |
5478 self.assertEqual(10, im.size[1]) | |
5479 | |
5480 im = GetImage(_REMOTE, '/instances/%s/rendered?height=10' % i) | |
5481 self.assertEqual("RGB", im.mode) | |
5482 self.assertEqual(10, im.size[0]) | |
5483 self.assertEqual(10, im.size[1]) | |
5484 | |
5485 im = GetImage(_REMOTE, '/instances/%s/rendered?height=128' % i) | |
5486 self.assertEqual("RGB", im.mode) | |
5487 self.assertEqual(128, im.size[0]) | |
5488 self.assertEqual(128, im.size[1]) | |
5489 | |
5490 im = GetImage(_REMOTE, '/instances/%s/rendered?height=10&smooth=0' % i) | |
5491 self.assertEqual("RGB", im.mode) | |
5492 self.assertEqual(10, im.size[0]) | |
5493 self.assertEqual(10, im.size[1]) | |
5494 | |
5495 im = GetImage(_REMOTE, '/instances/%s/rendered?height=10&smooth=1' % i) | |
5496 self.assertEqual("RGB", im.mode) | |
5497 self.assertEqual(10, im.size[0]) | |
5498 self.assertEqual(10, im.size[1]) | |
5499 | |
5500 im = GetImage(_REMOTE, '/instances/%s/rendered?height=5&width=10' % i) | |
5501 self.assertEqual("RGB", im.mode) | |
5502 self.assertEqual(5, im.size[0]) | |
5503 self.assertEqual(5, im.size[1]) | |
5504 | |
5505 | |
5506 # Grayscale image | |
5507 i = UploadInstance(_REMOTE, 'Brainix/Flair/IM-0001-0001.dcm')['ID'] | |
5508 im = GetImage(_REMOTE, '/instances/%s/rendered' % i) | |
5509 self.assertEqual("L", im.mode) | |
5510 self.assertEqual(288, im.size[0]) | |
5511 self.assertEqual(288, im.size[1]) | |
5512 self.assertEqual(0, im.getpixel((0, 0))) | |
5513 | |
5514 # Those are the original windowing parameters that are written | |
5515 # inside the DICOM file | |
5516 im2 = GetImage(_REMOTE, '/instances/%s/rendered?window-center=248.009544468547&window-width=431.351843817788' % i) | |
5517 self.assertEqual("L", im2.mode) | |
5518 self.assertEqual(288, im2.size[0]) | |
5519 self.assertEqual(288, im2.size[1]) | |
5520 self.assertTrue(ImageChops.difference(im, im2).getbbox() is None) | |
5521 | |
5522 im = GetImage(_REMOTE, '/instances/%s/rendered?width=512&smooth=0' % i) | |
5523 self.assertEqual("L", im.mode) | |
5524 self.assertEqual(512, im.size[0]) | |
5525 self.assertEqual(512, im.size[1]) | |
5526 | |
5527 im = GetImage(_REMOTE, '/instances/%s/rendered?width=10&smooth=0' % i) | |
5528 self.assertEqual("L", im.mode) | |
5529 self.assertEqual(10, im.size[0]) | |
5530 self.assertEqual(10, im.size[1]) | |
5531 | |
5532 im = GetImage(_REMOTE, '/instances/%s/rendered?width=10&smooth=1' % i) | |
5533 self.assertEqual("L", im.mode) | |
5534 self.assertEqual(10, im.size[0]) | |
5535 self.assertEqual(10, im.size[1]) | |
5536 | |
5537 im = GetImage(_REMOTE, '/instances/%s/rendered?width=1&window-center=-1000' % i) | |
5538 self.assertEqual("L", im.mode) | |
5539 self.assertEqual(1, im.size[0]) | |
5540 self.assertEqual(1, im.size[1]) | |
5541 self.assertEqual(255, im.getpixel((0, 0))) | |
5542 | |
5543 im = GetImage(_REMOTE, '/instances/%s/rendered?width=1&window-center=1000' % i) | |
5544 self.assertEqual("L", im.mode) | |
5545 self.assertEqual(1, im.size[0]) | |
5546 self.assertEqual(1, im.size[1]) | |
5547 self.assertEqual(0, im.getpixel((0, 0))) | |
5548 | |
5549 | |
5550 # Test monochrome 1 | |
5551 i = UploadInstance(_REMOTE, 'Issue44/Monochrome1.dcm')['ID'] | |
5552 im = GetImage(_REMOTE, '/instances/%s/rendered' % i) | |
5553 self.assertEqual("L", im.mode) | |
5554 self.assertEqual(2010, im.size[0]) | |
5555 self.assertEqual(2446, im.size[1]) | |
5556 self.assertEqual(0, im.getpixel((0, 0))) | |
5557 im = GetImage(_REMOTE, '/instances/%s/rendered?width=20' % i) | |
5558 self.assertEqual("L", im.mode) | |
5559 self.assertEqual(20, im.size[0]) | |
5560 self.assertEqual(24, im.size[1]) | |
5561 im = GetImage(_REMOTE, '/instances/%s/rendered?height=24' % i) | |
5562 self.assertEqual("L", im.mode) | |
5563 self.assertEqual(20, im.size[0]) | |
5564 self.assertEqual(24, im.size[1]) | |
5565 im = GetImage(_REMOTE, '/instances/%s/rendered?width=10&height=24' % i) | |
5566 self.assertEqual("L", im.mode) | |
5567 self.assertEqual(10, im.size[0]) | |
5568 self.assertEqual(12, im.size[1]) | |
5569 im = GetImage(_REMOTE, '/instances/%s/rendered?width=40&height=24' % i) | |
5570 self.assertEqual("L", im.mode) | |
5571 self.assertEqual(20, im.size[0]) | |
5572 self.assertEqual(24, im.size[1]) | |
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5573 |
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5574 |
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5575 def test_bitbucket_issue_154(self): |
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5576 # "Matching against list of UID-s by C-MOVE" |
319 | 5577 # https://bugs.orthanc-server.com/show_bug.cgi?id=154 |
268
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5578 a = UploadInstance(_REMOTE, 'Issue154-d1.dcm') ['ID'] |
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5579 b = UploadInstance(_REMOTE, 'Issue154-d2.dcm') ['ID'] |
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5580 |
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5581 study = '1.2.826.0.1.3680043.8.498.35214236271657363033644818354280454731' |
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5582 series1 = '1.2.826.0.1.3680043.8.498.12243321927795467590791662266352305113' |
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5583 series2 = '1.2.826.0.1.3680043.8.498.43769499931624584079690260699536473555' |
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5584 |
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|
5585 # C-FIND is working on list of UIDs |
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5586 i = CallFindScu([ '-k', 'QueryRetrieveLevel=SERIES', |
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5587 '-k', 'StudyInstanceUID=%s' % study, |
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5588 '-k', 'SeriesInstanceUID=%s\\%s' % (series1, series2) ]) |
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5589 series = re.findall('\(0020,000e\).*?\[(.*?)\]', i) |
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5590 self.assertEqual(2, len(series)) |
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5591 self.assertTrue(series1 in series) |
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5592 self.assertTrue(series2 in series) |
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5593 |
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5594 # Individual retrieval is working in Orthanc < 1.6.0 |
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5595 self.assertEqual(0, len(DoGet(_LOCAL, '/instances'))) |
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5596 self.assertTrue(MonitorJob(_REMOTE, lambda: CallMoveScu([ |
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5597 '--study', '-k', 'QueryRetrieveLevel=SERIES', |
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5598 '-k', 'StudyInstanceUID=%s' % study, |
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5599 '-k', 'SeriesInstanceUID=%s' % series1, |
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5600 ]))) |
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5601 self.assertTrue(MonitorJob(_REMOTE, lambda: CallMoveScu([ |
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5602 '--study', '-k', 'QueryRetrieveLevel=SERIES', |
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5603 '-k', 'StudyInstanceUID=%s' % study, |
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5604 '-k', 'SeriesInstanceUID=%s' % series2, |
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5605 ]))) |
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5606 self.assertEqual(2, len(DoGet(_LOCAL, '/instances'))) |
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5607 |
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5608 DropOrthanc(_LOCAL) |
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5609 |
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5610 # But list matching is working only in Orthanc >= 1.6.0 |
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5611 self.assertEqual(0, len(DoGet(_LOCAL, '/instances'))) |
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5612 self.assertTrue(MonitorJob(_REMOTE, lambda: CallMoveScu([ |
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5613 '--study', '-k', 'QueryRetrieveLevel=SERIES', |
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5614 '-k', 'StudyInstanceUID=%s' % study, |
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5615 '-k', 'SeriesInstanceUID=%s\\%s' % (series1, series2), |
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5616 ]))) |
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5617 self.assertEqual(2, len(DoGet(_LOCAL, '/instances'))) |
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5618 |
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5619 |
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5620 def test_storage_commitment_api(self): |
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5621 # Storage commitment is available since Orthanc 1.6.0 |
280
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5622 |
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5623 def WaitTransaction(uid): |
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5624 while True: |
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5625 s = DoGet(_REMOTE, '/storage-commitment/%s' % uid) |
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5626 if s['Status'] != 'Pending': |
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5627 return s |
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5628 else: |
342
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5629 time.sleep(0.01) |
280
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5630 |
281 | 5631 instance = UploadInstance(_REMOTE, 'DummyCT.dcm') |
279
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5632 sopClassUid = '1.2.840.10008.5.1.4.1.1.4' |
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5633 sopInstanceUid = '1.2.840.113619.2.176.2025.1499492.7040.1171286242.109' |
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5634 |
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5635 # Against self |
281 | 5636 transaction = DoPost(_REMOTE, '/modalities/self/storage-commitment', { |
5637 "DicomInstances" : [ [ sopClassUid, sopInstanceUid ] ], | |
5638 }) ['ID'] | |
279
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5639 self.assertTrue(transaction.startswith('2.25.')) |
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5640 |
280
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5641 result = WaitTransaction(transaction) |
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5642 self.assertEqual('ORTHANC', result['RemoteAET']) |
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5643 self.assertEqual('Success', result['Status']) |
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5644 self.assertEqual(1, len(result['Success'])) |
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5645 self.assertEqual(0, len(result['Failures'])) |
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5646 self.assertEqual(sopClassUid, result['Success'][0]['SOPClassUID']) |
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5647 self.assertEqual(sopInstanceUid, result['Success'][0]['SOPInstanceUID']) |
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5648 |
281 | 5649 tmp = DoPost(_REMOTE, '/modalities/self/storage-commitment', { |
5650 "DicomInstances" : [ | |
5651 { 'SOPClassUID' : sopClassUid, | |
5652 'SOPInstanceUID' : sopInstanceUid }, | |
5653 ], | |
5654 }) | |
5655 self.assertEqual(tmp['Path'], '/storage-commitment/%s' % tmp['ID']) | |
5656 self.assertEqual(result, WaitTransaction(transaction)) | |
5657 | |
5658 tmp = DoPost(_REMOTE, '/modalities/self/storage-commitment', { | |
5659 "Resources" : [ | |
5660 instance['ID'], | |
5661 instance['ParentSeries'], | |
5662 instance['ParentStudy'], | |
5663 instance['ParentPatient'], | |
5664 ] | |
5665 }) | |
280
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5666 self.assertEqual(tmp['Path'], '/storage-commitment/%s' % tmp['ID']) |
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5667 self.assertEqual(result, WaitTransaction(transaction)) |
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5668 |
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5669 |
281 | 5670 transaction = DoPost(_REMOTE, '/modalities/self/storage-commitment', { |
5671 "DicomInstances" : [ | |
5672 [ 'nope', 'nope2' ], | |
5673 [ sopClassUid, sopInstanceUid ], | |
5674 ], | |
5675 }) ['ID'] | |
279
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5676 self.assertTrue(transaction.startswith('2.25.')) |
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5677 |
280
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5678 result = WaitTransaction(transaction) |
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5679 self.assertEqual('ORTHANC', result['RemoteAET']) |
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5680 self.assertEqual('Failure', result['Status']) |
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5681 self.assertEqual(1, len(result['Success'])) |
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5682 self.assertEqual(1, len(result['Failures'])) |
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5683 self.assertEqual(sopClassUid, result['Success'][0]['SOPClassUID']) |
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5684 self.assertEqual(sopInstanceUid, result['Success'][0]['SOPInstanceUID']) |
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5685 self.assertEqual('nope', result['Failures'][0]['SOPClassUID']) |
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5686 self.assertEqual('nope2', result['Failures'][0]['SOPInstanceUID']) |
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5687 self.assertEqual(274, result['Failures'][0]['FailureReason']) |
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|
5688 |
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5689 # Cannot remove items from a failed storage commitment transaction |
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|
5690 self.assertRaises(Exception, lambda: |
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5691 DoPost(_REMOTE, '/storage-commitment/%s/remove' % transaction)) |
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|
5692 |
279
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|
5693 |
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5694 # Against Orthanc 0.8.6, that does not support storage commitment |
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5695 self.assertRaises(Exception, lambda: |
281 | 5696 DoPost(_REMOTE, '/modalities/orthanctest/storage-commitment', { |
5697 "DicomInstances" : [ | |
5698 [ sopClassUid, sopInstanceUid ], | |
5699 ] | |
5700 })) | |
279
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5701 |
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5702 |
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5703 |
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5704 def test_storage_commitment_store(self): |
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5705 # Storage commitment is available since Orthanc 1.6.0 |
280
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5706 |
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5707 def WaitTransaction(uid): |
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5708 while True: |
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5709 s = DoGet(_REMOTE, '/storage-commitment/%s' % uid) |
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5710 if s['Status'] != 'Pending': |
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|
5711 return s |
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5712 else: |
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5713 time.sleep(0.01) |
280
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|
5714 |
279
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5715 i = UploadInstance(_REMOTE, 'DummyCT.dcm')['ID'] |
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5716 self.assertEqual(1, len(DoGet(_REMOTE, '/instances'))) |
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5717 self.assertEqual(0, len(DoGet(_LOCAL, '/instances'))) |
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5718 |
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5719 # The Orthanc 0.8.6 from "_LOCAL" does not support storage commitment |
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5720 self.assertRaises(Exception, lambda: DoPost(_REMOTE, '/modalities/orthanctest/store', { |
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5721 'Resources' : [ i ], |
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5722 'StorageCommitment' : True, |
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5723 })) |
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5724 |
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5725 j = DoPost(_REMOTE, '/modalities/orthanctest/store', { |
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5726 'Resources' : [ i ], |
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|
5727 'StorageCommitment' : False, |
31e1e49df380
starting tests for storage commitment
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
269
diff
changeset
|
5728 }) |
31e1e49df380
starting tests for storage commitment
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
269
diff
changeset
|
5729 self.assertEqual(1, len(DoGet(_LOCAL, '/instances'))) |
31e1e49df380
starting tests for storage commitment
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
269
diff
changeset
|
5730 |
31e1e49df380
starting tests for storage commitment
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
269
diff
changeset
|
5731 j = DoPost(_REMOTE, '/modalities/self/store', { |
31e1e49df380
starting tests for storage commitment
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
269
diff
changeset
|
5732 'Resources' : [ i ], |
31e1e49df380
starting tests for storage commitment
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
269
diff
changeset
|
5733 'StorageCommitment' : True, |
31e1e49df380
starting tests for storage commitment
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
269
diff
changeset
|
5734 }) |
31e1e49df380
starting tests for storage commitment
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
269
diff
changeset
|
5735 |
31e1e49df380
starting tests for storage commitment
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
269
diff
changeset
|
5736 transaction = j['StorageCommitmentTransactionUID'] |
31e1e49df380
starting tests for storage commitment
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
269
diff
changeset
|
5737 self.assertTrue(transaction.startswith('2.25.')) |
280
5daa3896981c
testing storage commitment reports
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
279
diff
changeset
|
5738 |
5daa3896981c
testing storage commitment reports
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
279
diff
changeset
|
5739 result = WaitTransaction(transaction) |
5daa3896981c
testing storage commitment reports
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
279
diff
changeset
|
5740 self.assertEqual('ORTHANC', result['RemoteAET']) |
5daa3896981c
testing storage commitment reports
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
279
diff
changeset
|
5741 self.assertEqual('Success', result['Status']) |
5daa3896981c
testing storage commitment reports
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
279
diff
changeset
|
5742 self.assertEqual(1, len(result['Success'])) |
5daa3896981c
testing storage commitment reports
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
279
diff
changeset
|
5743 self.assertEqual(0, len(result['Failures'])) |
5daa3896981c
testing storage commitment reports
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
279
diff
changeset
|
5744 self.assertEqual('1.2.840.10008.5.1.4.1.1.4', result['Success'][0]['SOPClassUID']) |
5daa3896981c
testing storage commitment reports
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
279
diff
changeset
|
5745 self.assertEqual('1.2.840.113619.2.176.2025.1499492.7040.1171286242.109', |
5daa3896981c
testing storage commitment reports
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
279
diff
changeset
|
5746 result['Success'][0]['SOPInstanceUID']) |
5daa3896981c
testing storage commitment reports
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
279
diff
changeset
|
5747 |
5daa3896981c
testing storage commitment reports
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
279
diff
changeset
|
5748 self.assertEqual(1, len(DoGet(_REMOTE, '/instances'))) |
5daa3896981c
testing storage commitment reports
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
279
diff
changeset
|
5749 DoPost(_REMOTE, '/storage-commitment/%s/remove' % transaction) |
5daa3896981c
testing storage commitment reports
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
279
diff
changeset
|
5750 self.assertEqual(0, len(DoGet(_REMOTE, '/instances'))) |
285
281a32ecc5c1
test_store_straight
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
281
diff
changeset
|
5751 |
281a32ecc5c1
test_store_straight
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
281
diff
changeset
|
5752 |
281a32ecc5c1
test_store_straight
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
281
diff
changeset
|
5753 def test_store_straight(self): # New in Orthanc 1.6.1 |
281a32ecc5c1
test_store_straight
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
281
diff
changeset
|
5754 self.assertEqual(0, len(DoGet(_LOCAL, '/instances'))) |
281a32ecc5c1
test_store_straight
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
281
diff
changeset
|
5755 self.assertEqual(0, len(DoGet(_REMOTE, '/instances'))) |
281a32ecc5c1
test_store_straight
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
281
diff
changeset
|
5756 |
281a32ecc5c1
test_store_straight
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
281
diff
changeset
|
5757 with open(GetDatabasePath('DummyCT.dcm'), 'rb') as f: |
281a32ecc5c1
test_store_straight
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
281
diff
changeset
|
5758 dicom = f.read() |
281a32ecc5c1
test_store_straight
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
281
diff
changeset
|
5759 |
281a32ecc5c1
test_store_straight
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
281
diff
changeset
|
5760 self.assertRaises(Exception, lambda: DoPost( |
281a32ecc5c1
test_store_straight
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
281
diff
changeset
|
5761 _REMOTE, '/modalities/orthanctest/store-straight', 'nope', 'nope')) |
281a32ecc5c1
test_store_straight
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
281
diff
changeset
|
5762 |
281a32ecc5c1
test_store_straight
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
281
diff
changeset
|
5763 answer = DoPost(_REMOTE, '/modalities/orthanctest/store-straight', dicom, 'nope') |
281a32ecc5c1
test_store_straight
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
281
diff
changeset
|
5764 |
281a32ecc5c1
test_store_straight
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
281
diff
changeset
|
5765 self.assertEqual('1.2.840.10008.5.1.4.1.1.4', |
281a32ecc5c1
test_store_straight
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
281
diff
changeset
|
5766 answer['SOPClassUID']) |
281a32ecc5c1
test_store_straight
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
281
diff
changeset
|
5767 self.assertEqual('1.2.840.113619.2.176.2025.1499492.7040.1171286242.109', |
281a32ecc5c1
test_store_straight
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
281
diff
changeset
|
5768 answer['SOPInstanceUID']) |
281a32ecc5c1
test_store_straight
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
281
diff
changeset
|
5769 |
281a32ecc5c1
test_store_straight
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
281
diff
changeset
|
5770 self.assertEqual(1, len(DoGet(_LOCAL, '/instances'))) |
281a32ecc5c1
test_store_straight
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
281
diff
changeset
|
5771 self.assertEqual(0, len(DoGet(_REMOTE, '/instances'))) |
289
4a70411ac9ad
test_storescu_transcoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
285
diff
changeset
|
5772 |
4a70411ac9ad
test_storescu_transcoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
285
diff
changeset
|
5773 |
4a70411ac9ad
test_storescu_transcoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
285
diff
changeset
|
5774 def test_storescu_transcoding(self): # New in Orthanc 1.7.0 |
4a70411ac9ad
test_storescu_transcoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
285
diff
changeset
|
5775 # Add a RLE-encoded DICOM file |
4a70411ac9ad
test_storescu_transcoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
285
diff
changeset
|
5776 i = UploadInstance(_REMOTE, 'TransferSyntaxes/1.2.840.10008.1.2.5.dcm')['ID'] |
4a70411ac9ad
test_storescu_transcoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
285
diff
changeset
|
5777 self.assertEqual(0, len(DoGet(_LOCAL, '/instances'))) |
4a70411ac9ad
test_storescu_transcoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
285
diff
changeset
|
5778 self.assertEqual(1, len(DoGet(_REMOTE, '/instances'))) |
4a70411ac9ad
test_storescu_transcoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
285
diff
changeset
|
5779 rleSize = len(DoGet(_REMOTE, '/instances/%s/file' % i)) |
4a70411ac9ad
test_storescu_transcoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
285
diff
changeset
|
5780 |
4a70411ac9ad
test_storescu_transcoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
285
diff
changeset
|
5781 # Export the instance, with transcoding: "_REMOTE" is the |
4a70411ac9ad
test_storescu_transcoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
285
diff
changeset
|
5782 # Orthanc server being tested |
4a70411ac9ad
test_storescu_transcoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
285
diff
changeset
|
5783 try: |
4a70411ac9ad
test_storescu_transcoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
285
diff
changeset
|
5784 DoDelete(_REMOTE, '/modalities/toto') |
4a70411ac9ad
test_storescu_transcoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
285
diff
changeset
|
5785 except: |
4a70411ac9ad
test_storescu_transcoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
285
diff
changeset
|
5786 pass |
4a70411ac9ad
test_storescu_transcoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
285
diff
changeset
|
5787 |
4a70411ac9ad
test_storescu_transcoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
285
diff
changeset
|
5788 params = DoGet(_REMOTE, '/modalities?expand') ['orthanctest'] |
4a70411ac9ad
test_storescu_transcoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
285
diff
changeset
|
5789 DoPut(_REMOTE, '/modalities/toto', params) |
4a70411ac9ad
test_storescu_transcoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
285
diff
changeset
|
5790 DoPost(_REMOTE, '/modalities/toto/store', str(i), 'text/plain') |
4a70411ac9ad
test_storescu_transcoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
285
diff
changeset
|
5791 j = DoGet(_LOCAL, '/instances') |
4a70411ac9ad
test_storescu_transcoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
285
diff
changeset
|
5792 self.assertEqual(1, len(j)) |
4a70411ac9ad
test_storescu_transcoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
285
diff
changeset
|
5793 uncompressedSize = len(DoGet(_LOCAL, '/instances/%s/file' % j[0])) |
4a70411ac9ad
test_storescu_transcoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
285
diff
changeset
|
5794 self.assertTrue(uncompressedSize > rleSize / 2) |
4a70411ac9ad
test_storescu_transcoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
285
diff
changeset
|
5795 |
4a70411ac9ad
test_storescu_transcoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
285
diff
changeset
|
5796 # Export, with transcoding disabled => this fails |
4a70411ac9ad
test_storescu_transcoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
285
diff
changeset
|
5797 params['AllowTranscoding'] = False |
4a70411ac9ad
test_storescu_transcoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
285
diff
changeset
|
5798 DoPut(_REMOTE, '/modalities/toto', params) |
4a70411ac9ad
test_storescu_transcoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
285
diff
changeset
|
5799 self.assertRaises(Exception, lambda: DoPost(_REMOTE, '/modalities/toto/store', str(i), 'text/plain')) |
378
a4b8450a1158
fix test_storescu_transcoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
377
diff
changeset
|
5800 DoDelete(_REMOTE, '/modalities/toto') |
290
b5333f87065b
test_bitbucket_issue_169
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
289
diff
changeset
|
5801 |
b5333f87065b
test_bitbucket_issue_169
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
289
diff
changeset
|
5802 |
b5333f87065b
test_bitbucket_issue_169
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
289
diff
changeset
|
5803 def test_bitbucket_issue_169(self): |
b5333f87065b
test_bitbucket_issue_169
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
289
diff
changeset
|
5804 with open(GetDatabasePath('Issue169.dcm.bz2'), 'rb') as f: |
b5333f87065b
test_bitbucket_issue_169
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
289
diff
changeset
|
5805 dicom = bz2.decompress(f.read()) |
b5333f87065b
test_bitbucket_issue_169
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
289
diff
changeset
|
5806 |
b5333f87065b
test_bitbucket_issue_169
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
289
diff
changeset
|
5807 self.assertEqual('1.2.840.10008.1.2.1', GetTransferSyntax(dicom)) |
b5333f87065b
test_bitbucket_issue_169
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
289
diff
changeset
|
5808 |
b5333f87065b
test_bitbucket_issue_169
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
289
diff
changeset
|
5809 self.assertEqual(44350560, len(dicom)) |
b5333f87065b
test_bitbucket_issue_169
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
289
diff
changeset
|
5810 i = DoPost(_REMOTE, '/instances', dicom, 'application/dicom') ['ID'] |
b5333f87065b
test_bitbucket_issue_169
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
289
diff
changeset
|
5811 |
b5333f87065b
test_bitbucket_issue_169
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
289
diff
changeset
|
5812 tags = DoGet(_REMOTE, '/instances/%s/tags' % i) |
b5333f87065b
test_bitbucket_issue_169
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
289
diff
changeset
|
5813 self.assertEqual('NORMAL', tags['1337,1001']['Value']) |
b5333f87065b
test_bitbucket_issue_169
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
289
diff
changeset
|
5814 |
b5333f87065b
test_bitbucket_issue_169
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
289
diff
changeset
|
5815 self.assertEqual(0, len(DoGet(_LOCAL, '/instances'))) |
b5333f87065b
test_bitbucket_issue_169
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
289
diff
changeset
|
5816 DoPost(_REMOTE, '/modalities/orthanctest/store', str(i), 'text/plain') |
b5333f87065b
test_bitbucket_issue_169
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
289
diff
changeset
|
5817 j = DoGet(_LOCAL, '/instances') |
b5333f87065b
test_bitbucket_issue_169
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
289
diff
changeset
|
5818 self.assertEqual(1, len(j)) |
b5333f87065b
test_bitbucket_issue_169
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
289
diff
changeset
|
5819 |
b5333f87065b
test_bitbucket_issue_169
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
289
diff
changeset
|
5820 # In Orthanc <= 1.6.1, transfer syntax changed from "Explicit |
b5333f87065b
test_bitbucket_issue_169
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
289
diff
changeset
|
5821 # VR Little Endian" (1.2.840.10008.1.2.1) to "Implicit VR |
b5333f87065b
test_bitbucket_issue_169
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
289
diff
changeset
|
5822 # Little Endian" (1.2.840.10008.1.2) |
291
cfa785074c64
test_modify_transcode
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
290
diff
changeset
|
5823 self.assertEqual('1.2.840.10008.1.2.1', GetTransferSyntax( |
cfa785074c64
test_modify_transcode
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
290
diff
changeset
|
5824 DoGet(_LOCAL, '/instances/%s/file' % j[0]))) |
290
b5333f87065b
test_bitbucket_issue_169
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
289
diff
changeset
|
5825 |
b5333f87065b
test_bitbucket_issue_169
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
289
diff
changeset
|
5826 # In Orthanc <= 1.6.1, the value of the private tags was lost |
b5333f87065b
test_bitbucket_issue_169
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
289
diff
changeset
|
5827 # because of this transcoding |
b5333f87065b
test_bitbucket_issue_169
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
289
diff
changeset
|
5828 tags = DoGet(_LOCAL, '/instances/%s/tags' % j[0]) |
b5333f87065b
test_bitbucket_issue_169
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
289
diff
changeset
|
5829 self.assertEqual('NORMAL', tags['1337,1001']['Value']) |
291
cfa785074c64
test_modify_transcode
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
290
diff
changeset
|
5830 |
cfa785074c64
test_modify_transcode
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
290
diff
changeset
|
5831 |
302
22b6dd0f8c84
test_modify_transcode_study
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
301
diff
changeset
|
5832 def test_modify_transcode_instance(self): |
291
cfa785074c64
test_modify_transcode
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
290
diff
changeset
|
5833 i = UploadInstance(_REMOTE, 'KarstenHilbertRF.dcm')['ID'] |
cfa785074c64
test_modify_transcode
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
290
diff
changeset
|
5834 self.assertEqual('1.2.840.10008.1.2.1', GetTransferSyntax( |
cfa785074c64
test_modify_transcode
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
290
diff
changeset
|
5835 DoGet(_REMOTE, '/instances/%s/file' % i))) |
cfa785074c64
test_modify_transcode
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
290
diff
changeset
|
5836 |
299
c2144cf4bd83
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diff
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|
5837 a = ExtractDicomTags(DoGet(_REMOTE, '/instances/%s/file' % i), [ 'SOPInstanceUID' ]) [0] |
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diff
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|
5838 self.assertTrue(len(a) > 20) |
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diff
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|
5839 |
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HasGdcmPlugin() test
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diff
changeset
|
5840 SYNTAXES = [ |
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diff
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|
5841 '1.2.840.10008.1.2', |
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293
diff
changeset
|
5842 '1.2.840.10008.1.2.1', |
300
d6c2eb5a2603
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299
diff
changeset
|
5843 #'1.2.840.10008.1.2.1.99', # Deflated Explicit VR Little Endian (cannot be decoded in debug mode if Orthanc is statically linked against DCMTK 3.6.5) |
299
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diff
changeset
|
5844 '1.2.840.10008.1.2.2', |
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diff
changeset
|
5845 '1.2.840.10008.1.2.4.50', |
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293
diff
changeset
|
5846 '1.2.840.10008.1.2.4.51', |
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Sebastien Jodogne <s.jodogne@gmail.com>
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diff
changeset
|
5847 '1.2.840.10008.1.2.4.57', |
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HasGdcmPlugin() test
Sebastien Jodogne <s.jodogne@gmail.com>
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293
diff
changeset
|
5848 '1.2.840.10008.1.2.4.70', |
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diff
changeset
|
5849 ] |
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293
diff
changeset
|
5850 |
304 | 5851 if HasGdcmPlugin(_REMOTE): |
299
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diff
changeset
|
5852 SYNTAXES = SYNTAXES + [ |
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diff
changeset
|
5853 '1.2.840.10008.1.2.4.80', # This makes DCMTK 3.6.2 crash |
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Sebastien Jodogne <s.jodogne@gmail.com>
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diff
changeset
|
5854 '1.2.840.10008.1.2.4.81', # This makes DCMTK 3.6.2 crash |
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HasGdcmPlugin() test
Sebastien Jodogne <s.jodogne@gmail.com>
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293
diff
changeset
|
5855 '1.2.840.10008.1.2.4.90', # JPEG2k, unavailable without GDCM |
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Sebastien Jodogne <s.jodogne@gmail.com>
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293
diff
changeset
|
5856 '1.2.840.10008.1.2.4.91', # JPEG2k, unavailable without GDCM |
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Sebastien Jodogne <s.jodogne@gmail.com>
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diff
changeset
|
5857 ] |
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Sebastien Jodogne <s.jodogne@gmail.com>
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293
diff
changeset
|
5858 |
c2144cf4bd83
HasGdcmPlugin() test
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
293
diff
changeset
|
5859 for syntax in SYNTAXES: |
291
cfa785074c64
test_modify_transcode
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
290
diff
changeset
|
5860 transcoded = DoPost(_REMOTE, '/instances/%s/modify' % i, { |
cfa785074c64
test_modify_transcode
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
290
diff
changeset
|
5861 'Transcode' : syntax, |
299
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diff
changeset
|
5862 'Keep' : [ 'SOPInstanceUID' ], |
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Sebastien Jodogne <s.jodogne@gmail.com>
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293
diff
changeset
|
5863 'Force' : True, |
291
cfa785074c64
test_modify_transcode
Sebastien Jodogne <s.jodogne@gmail.com>
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290
diff
changeset
|
5864 }) |
cfa785074c64
test_modify_transcode
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
290
diff
changeset
|
5865 |
cfa785074c64
test_modify_transcode
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
290
diff
changeset
|
5866 self.assertEqual(syntax, GetTransferSyntax(transcoded)) |
292
e1827a4f5d3b
test_archive_transcode
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
291
diff
changeset
|
5867 |
299
c2144cf4bd83
HasGdcmPlugin() test
Sebastien Jodogne <s.jodogne@gmail.com>
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293
diff
changeset
|
5868 b = ExtractDicomTags(transcoded, [ 'SOPInstanceUID' ]) [0] |
c2144cf4bd83
HasGdcmPlugin() test
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
293
diff
changeset
|
5869 self.assertTrue(len(b) > 20) |
c2144cf4bd83
HasGdcmPlugin() test
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
293
diff
changeset
|
5870 if syntax in [ '1.2.840.10008.1.2.4.50', |
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HasGdcmPlugin() test
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
293
diff
changeset
|
5871 '1.2.840.10008.1.2.4.51', |
c2144cf4bd83
HasGdcmPlugin() test
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
293
diff
changeset
|
5872 '1.2.840.10008.1.2.4.81', |
c2144cf4bd83
HasGdcmPlugin() test
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
293
diff
changeset
|
5873 '1.2.840.10008.1.2.4.91' ]: |
c2144cf4bd83
HasGdcmPlugin() test
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
293
diff
changeset
|
5874 # Lossy transcoding: The SOP instance UID must have changed |
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HasGdcmPlugin() test
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
293
diff
changeset
|
5875 self.assertNotEqual(a, b) |
c2144cf4bd83
HasGdcmPlugin() test
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
293
diff
changeset
|
5876 else: |
c2144cf4bd83
HasGdcmPlugin() test
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
293
diff
changeset
|
5877 self.assertEqual(a, b) |
292
e1827a4f5d3b
test_archive_transcode
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
291
diff
changeset
|
5878 |
e1827a4f5d3b
test_archive_transcode
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
291
diff
changeset
|
5879 def test_archive_transcode(self): |
e1827a4f5d3b
test_archive_transcode
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
291
diff
changeset
|
5880 info = UploadInstance(_REMOTE, 'KarstenHilbertRF.dcm') |
e1827a4f5d3b
test_archive_transcode
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
291
diff
changeset
|
5881 |
293
032722c3e919
extended test_archive_transcode
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
292
diff
changeset
|
5882 # GET on "/media" |
292
e1827a4f5d3b
test_archive_transcode
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
291
diff
changeset
|
5883 z = GetArchive(_REMOTE, '/patients/%s/media' % info['ParentPatient']) |
e1827a4f5d3b
test_archive_transcode
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
291
diff
changeset
|
5884 self.assertEqual(2, len(z.namelist())) |
e1827a4f5d3b
test_archive_transcode
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
291
diff
changeset
|
5885 self.assertEqual('1.2.840.10008.1.2.1', GetTransferSyntax(z.read('IMAGES/IM0'))) |
e1827a4f5d3b
test_archive_transcode
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
291
diff
changeset
|
5886 |
e1827a4f5d3b
test_archive_transcode
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
291
diff
changeset
|
5887 self.assertRaises(Exception, lambda: DoGet(_REMOTE, '/patients/%s/media?transcode=nope' % info['ParentPatient'])) |
e1827a4f5d3b
test_archive_transcode
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
291
diff
changeset
|
5888 |
e1827a4f5d3b
test_archive_transcode
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
291
diff
changeset
|
5889 z = GetArchive(_REMOTE, '/patients/%s/media?transcode=1.2.840.10008.1.2.4.50' % info['ParentPatient']) |
e1827a4f5d3b
test_archive_transcode
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
291
diff
changeset
|
5890 self.assertEqual('1.2.840.10008.1.2.4.50', GetTransferSyntax(z.read('IMAGES/IM0'))) |
e1827a4f5d3b
test_archive_transcode
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
291
diff
changeset
|
5891 |
e1827a4f5d3b
test_archive_transcode
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
291
diff
changeset
|
5892 z = GetArchive(_REMOTE, '/studies/%s/media?transcode=1.2.840.10008.1.2.4.51' % info['ParentStudy']) |
e1827a4f5d3b
test_archive_transcode
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
291
diff
changeset
|
5893 self.assertEqual('1.2.840.10008.1.2.4.51', GetTransferSyntax(z.read('IMAGES/IM0'))) |
e1827a4f5d3b
test_archive_transcode
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
291
diff
changeset
|
5894 |
e1827a4f5d3b
test_archive_transcode
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
291
diff
changeset
|
5895 z = GetArchive(_REMOTE, '/series/%s/media?transcode=1.2.840.10008.1.2.4.57' % info['ParentSeries']) |
e1827a4f5d3b
test_archive_transcode
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
291
diff
changeset
|
5896 self.assertEqual('1.2.840.10008.1.2.4.57', GetTransferSyntax(z.read('IMAGES/IM0'))) |
e1827a4f5d3b
test_archive_transcode
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
291
diff
changeset
|
5897 |
293
032722c3e919
extended test_archive_transcode
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
292
diff
changeset
|
5898 |
032722c3e919
extended test_archive_transcode
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
292
diff
changeset
|
5899 # POST on "/media" |
032722c3e919
extended test_archive_transcode
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
292
diff
changeset
|
5900 self.assertRaises(Exception, lambda: PostArchive( |
032722c3e919
extended test_archive_transcode
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
292
diff
changeset
|
5901 _REMOTE, '/patients/%s/media' % info['ParentPatient'], { 'Transcode' : 'nope' })) |
032722c3e919
extended test_archive_transcode
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
292
diff
changeset
|
5902 |
032722c3e919
extended test_archive_transcode
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
292
diff
changeset
|
5903 z = PostArchive(_REMOTE, '/patients/%s/media' % info['ParentPatient'], { |
032722c3e919
extended test_archive_transcode
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
292
diff
changeset
|
5904 'Transcode' : '1.2.840.10008.1.2.4.50', |
032722c3e919
extended test_archive_transcode
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
292
diff
changeset
|
5905 }) |
032722c3e919
extended test_archive_transcode
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
292
diff
changeset
|
5906 self.assertEqual('1.2.840.10008.1.2.4.50', GetTransferSyntax(z.read('IMAGES/IM0'))) |
032722c3e919
extended test_archive_transcode
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
292
diff
changeset
|
5907 |
032722c3e919
extended test_archive_transcode
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
292
diff
changeset
|
5908 z = PostArchive(_REMOTE, '/studies/%s/media' % info['ParentStudy'], { |
032722c3e919
extended test_archive_transcode
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
292
diff
changeset
|
5909 'Transcode' : '1.2.840.10008.1.2.4.51', |
032722c3e919
extended test_archive_transcode
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
292
diff
changeset
|
5910 }) |
032722c3e919
extended test_archive_transcode
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
292
diff
changeset
|
5911 self.assertEqual('1.2.840.10008.1.2.4.51', GetTransferSyntax(z.read('IMAGES/IM0'))) |
032722c3e919
extended test_archive_transcode
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
292
diff
changeset
|
5912 |
032722c3e919
extended test_archive_transcode
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
292
diff
changeset
|
5913 z = PostArchive(_REMOTE, '/series/%s/media' % info['ParentSeries'], { |
032722c3e919
extended test_archive_transcode
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
292
diff
changeset
|
5914 'Transcode' : '1.2.840.10008.1.2.4.57', |
032722c3e919
extended test_archive_transcode
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
292
diff
changeset
|
5915 }) |
032722c3e919
extended test_archive_transcode
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
292
diff
changeset
|
5916 self.assertEqual('1.2.840.10008.1.2.4.57', GetTransferSyntax(z.read('IMAGES/IM0'))) |
032722c3e919
extended test_archive_transcode
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
292
diff
changeset
|
5917 |
032722c3e919
extended test_archive_transcode
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
292
diff
changeset
|
5918 |
032722c3e919
extended test_archive_transcode
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
292
diff
changeset
|
5919 # GET on "/archive" |
292
e1827a4f5d3b
test_archive_transcode
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
291
diff
changeset
|
5920 z = GetArchive(_REMOTE, '/patients/%s/archive' % info['ParentPatient']) |
e1827a4f5d3b
test_archive_transcode
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
291
diff
changeset
|
5921 self.assertEqual(1, len(z.namelist())) |
e1827a4f5d3b
test_archive_transcode
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
291
diff
changeset
|
5922 self.assertEqual('1.2.840.10008.1.2.1', GetTransferSyntax(z.read(z.namelist()[0]))) |
e1827a4f5d3b
test_archive_transcode
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
291
diff
changeset
|
5923 |
e1827a4f5d3b
test_archive_transcode
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
291
diff
changeset
|
5924 self.assertRaises(Exception, lambda: DoGet(_REMOTE, '/patients/%s/archive?transcode=nope' % info['ParentPatient'])) |
e1827a4f5d3b
test_archive_transcode
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
291
diff
changeset
|
5925 |
e1827a4f5d3b
test_archive_transcode
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
291
diff
changeset
|
5926 z = GetArchive(_REMOTE, '/patients/%s/archive?transcode=1.2.840.10008.1.2' % info['ParentPatient']) |
e1827a4f5d3b
test_archive_transcode
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
291
diff
changeset
|
5927 self.assertEqual('1.2.840.10008.1.2', GetTransferSyntax(z.read(z.namelist()[0]))) |
e1827a4f5d3b
test_archive_transcode
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
291
diff
changeset
|
5928 |
e1827a4f5d3b
test_archive_transcode
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
291
diff
changeset
|
5929 z = GetArchive(_REMOTE, '/studies/%s/archive?transcode=1.2.840.10008.1.2.2' % info['ParentStudy']) |
e1827a4f5d3b
test_archive_transcode
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
291
diff
changeset
|
5930 self.assertEqual('1.2.840.10008.1.2.2', GetTransferSyntax(z.read(z.namelist()[0]))) |
e1827a4f5d3b
test_archive_transcode
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
291
diff
changeset
|
5931 |
e1827a4f5d3b
test_archive_transcode
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
291
diff
changeset
|
5932 z = GetArchive(_REMOTE, '/series/%s/archive?transcode=1.2.840.10008.1.2.4.70' % info['ParentSeries']) |
e1827a4f5d3b
test_archive_transcode
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
291
diff
changeset
|
5933 self.assertEqual('1.2.840.10008.1.2.4.70', GetTransferSyntax(z.read(z.namelist()[0]))) |
293
032722c3e919
extended test_archive_transcode
Sebastien Jodogne <s.jodogne@gmail.com>
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diff
changeset
|
5934 |
032722c3e919
extended test_archive_transcode
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
292
diff
changeset
|
5935 |
032722c3e919
extended test_archive_transcode
Sebastien Jodogne <s.jodogne@gmail.com>
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diff
changeset
|
5936 # POST on "/archive" |
032722c3e919
extended test_archive_transcode
Sebastien Jodogne <s.jodogne@gmail.com>
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diff
changeset
|
5937 self.assertRaises(Exception, lambda: PostArchive( |
032722c3e919
extended test_archive_transcode
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diff
changeset
|
5938 _REMOTE, '/patients/%s/archive' % info['ParentPatient'], { 'Transcode' : 'nope' })) |
032722c3e919
extended test_archive_transcode
Sebastien Jodogne <s.jodogne@gmail.com>
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diff
changeset
|
5939 |
032722c3e919
extended test_archive_transcode
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
292
diff
changeset
|
5940 z = PostArchive(_REMOTE, '/patients/%s/archive' % info['ParentPatient'], { |
032722c3e919
extended test_archive_transcode
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
292
diff
changeset
|
5941 'Transcode' : '1.2.840.10008.1.2.4.50', |
032722c3e919
extended test_archive_transcode
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
292
diff
changeset
|
5942 }) |
032722c3e919
extended test_archive_transcode
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
292
diff
changeset
|
5943 self.assertEqual('1.2.840.10008.1.2.4.50', GetTransferSyntax(z.read(z.namelist()[0]))) |
032722c3e919
extended test_archive_transcode
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
292
diff
changeset
|
5944 |
032722c3e919
extended test_archive_transcode
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
292
diff
changeset
|
5945 z = PostArchive(_REMOTE, '/studies/%s/archive' % info['ParentStudy'], { |
032722c3e919
extended test_archive_transcode
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
292
diff
changeset
|
5946 'Transcode' : '1.2.840.10008.1.2.4.51', |
032722c3e919
extended test_archive_transcode
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
292
diff
changeset
|
5947 }) |
032722c3e919
extended test_archive_transcode
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
292
diff
changeset
|
5948 self.assertEqual('1.2.840.10008.1.2.4.51', GetTransferSyntax(z.read(z.namelist()[0]))) |
032722c3e919
extended test_archive_transcode
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
292
diff
changeset
|
5949 |
032722c3e919
extended test_archive_transcode
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
292
diff
changeset
|
5950 z = PostArchive(_REMOTE, '/series/%s/archive' % info['ParentSeries'], { |
032722c3e919
extended test_archive_transcode
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
292
diff
changeset
|
5951 'Transcode' : '1.2.840.10008.1.2.4.57', |
032722c3e919
extended test_archive_transcode
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
292
diff
changeset
|
5952 }) |
032722c3e919
extended test_archive_transcode
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
292
diff
changeset
|
5953 self.assertEqual('1.2.840.10008.1.2.4.57', GetTransferSyntax(z.read(z.namelist()[0]))) |
292
e1827a4f5d3b
test_archive_transcode
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
291
diff
changeset
|
5954 |
293
032722c3e919
extended test_archive_transcode
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
292
diff
changeset
|
5955 |
032722c3e919
extended test_archive_transcode
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
292
diff
changeset
|
5956 # "/tools/create-*" |
032722c3e919
extended test_archive_transcode
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
292
diff
changeset
|
5957 z = PostArchive(_REMOTE, '/tools/create-archive', { |
032722c3e919
extended test_archive_transcode
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
292
diff
changeset
|
5958 'Resources' : [ info['ParentStudy'] ], |
032722c3e919
extended test_archive_transcode
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
292
diff
changeset
|
5959 'Transcode' : '1.2.840.10008.1.2.4.50', |
032722c3e919
extended test_archive_transcode
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
292
diff
changeset
|
5960 }) |
032722c3e919
extended test_archive_transcode
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
292
diff
changeset
|
5961 self.assertEqual(1, len(z.namelist())) |
032722c3e919
extended test_archive_transcode
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
292
diff
changeset
|
5962 self.assertEqual('1.2.840.10008.1.2.4.50', GetTransferSyntax(z.read(z.namelist()[0]))) |
032722c3e919
extended test_archive_transcode
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
292
diff
changeset
|
5963 |
032722c3e919
extended test_archive_transcode
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
292
diff
changeset
|
5964 z = PostArchive(_REMOTE, '/tools/create-media', { |
032722c3e919
extended test_archive_transcode
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
292
diff
changeset
|
5965 'Resources' : [ info['ParentStudy'] ], |
032722c3e919
extended test_archive_transcode
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
292
diff
changeset
|
5966 'Transcode' : '1.2.840.10008.1.2.4.51', |
032722c3e919
extended test_archive_transcode
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
292
diff
changeset
|
5967 }) |
032722c3e919
extended test_archive_transcode
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
292
diff
changeset
|
5968 self.assertEqual(2, len(z.namelist())) |
032722c3e919
extended test_archive_transcode
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
292
diff
changeset
|
5969 self.assertEqual('1.2.840.10008.1.2.4.51', GetTransferSyntax(z.read('IMAGES/IM0'))) |
032722c3e919
extended test_archive_transcode
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
292
diff
changeset
|
5970 |
032722c3e919
extended test_archive_transcode
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
292
diff
changeset
|
5971 z = PostArchive(_REMOTE, '/tools/create-media-extended', { |
032722c3e919
extended test_archive_transcode
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
292
diff
changeset
|
5972 'Resources' : [ info['ParentStudy'] ], |
032722c3e919
extended test_archive_transcode
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
292
diff
changeset
|
5973 'Transcode' : '1.2.840.10008.1.2.4.57', |
032722c3e919
extended test_archive_transcode
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
292
diff
changeset
|
5974 }) |
032722c3e919
extended test_archive_transcode
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
292
diff
changeset
|
5975 self.assertEqual(2, len(z.namelist())) |
032722c3e919
extended test_archive_transcode
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
292
diff
changeset
|
5976 self.assertEqual('1.2.840.10008.1.2.4.57', GetTransferSyntax(z.read('IMAGES/IM0'))) |
032722c3e919
extended test_archive_transcode
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
292
diff
changeset
|
5977 |
308 | 5978 |
301
6652d5720a45
test_modify_keep_source
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
300
diff
changeset
|
5979 def test_modify_keep_source(self): |
6652d5720a45
test_modify_keep_source
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
300
diff
changeset
|
5980 # https://groups.google.com/d/msg/orthanc-users/CgU-Wg8vDio/BY5ZWcDEAgAJ |
6652d5720a45
test_modify_keep_source
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
300
diff
changeset
|
5981 i = UploadInstance(_REMOTE, 'DummyCT.dcm') |
6652d5720a45
test_modify_keep_source
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
300
diff
changeset
|
5982 self.assertEqual(1, len(DoGet(_REMOTE, '/studies'))) |
6652d5720a45
test_modify_keep_source
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
300
diff
changeset
|
5983 |
6652d5720a45
test_modify_keep_source
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
300
diff
changeset
|
5984 j = DoPost(_REMOTE, '/studies/%s/modify' % i['ParentStudy'], { |
6652d5720a45
test_modify_keep_source
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
300
diff
changeset
|
5985 'Replace' : { |
6652d5720a45
test_modify_keep_source
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
300
diff
changeset
|
5986 'StationName' : 'TEST', |
6652d5720a45
test_modify_keep_source
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
300
diff
changeset
|
5987 }, |
6652d5720a45
test_modify_keep_source
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
300
diff
changeset
|
5988 'KeepSource' : True, |
6652d5720a45
test_modify_keep_source
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
300
diff
changeset
|
5989 }) |
6652d5720a45
test_modify_keep_source
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
300
diff
changeset
|
5990 |
6652d5720a45
test_modify_keep_source
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
300
diff
changeset
|
5991 s = DoGet(_REMOTE, '/studies') |
6652d5720a45
test_modify_keep_source
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
300
diff
changeset
|
5992 self.assertEqual(2, len(s)) |
6652d5720a45
test_modify_keep_source
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
300
diff
changeset
|
5993 self.assertTrue(i['ParentStudy'] in s) |
6652d5720a45
test_modify_keep_source
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
300
diff
changeset
|
5994 self.assertTrue(j['ID'] in s) |
6652d5720a45
test_modify_keep_source
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
300
diff
changeset
|
5995 |
6652d5720a45
test_modify_keep_source
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
300
diff
changeset
|
5996 DoDelete(_REMOTE, '/studies/%s' % j['ID']) |
6652d5720a45
test_modify_keep_source
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
300
diff
changeset
|
5997 self.assertEqual(1, len(DoGet(_REMOTE, '/studies'))) |
6652d5720a45
test_modify_keep_source
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
300
diff
changeset
|
5998 |
6652d5720a45
test_modify_keep_source
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
300
diff
changeset
|
5999 j = DoPost(_REMOTE, '/studies/%s/modify' % i['ParentStudy'], { |
6652d5720a45
test_modify_keep_source
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
300
diff
changeset
|
6000 'Replace' : { |
6652d5720a45
test_modify_keep_source
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
300
diff
changeset
|
6001 'StationName' : 'TEST', |
6652d5720a45
test_modify_keep_source
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
300
diff
changeset
|
6002 }, |
6652d5720a45
test_modify_keep_source
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
300
diff
changeset
|
6003 'KeepSource' : False, |
6652d5720a45
test_modify_keep_source
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
300
diff
changeset
|
6004 }) |
6652d5720a45
test_modify_keep_source
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
300
diff
changeset
|
6005 |
6652d5720a45
test_modify_keep_source
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
300
diff
changeset
|
6006 s = DoGet(_REMOTE, '/studies') |
6652d5720a45
test_modify_keep_source
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
300
diff
changeset
|
6007 self.assertEqual(1, len(s)) |
6652d5720a45
test_modify_keep_source
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
300
diff
changeset
|
6008 self.assertFalse(i['ParentStudy'] in s) |
6652d5720a45
test_modify_keep_source
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
300
diff
changeset
|
6009 self.assertTrue(j['ID'] in s) |
302
22b6dd0f8c84
test_modify_transcode_study
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
301
diff
changeset
|
6010 |
22b6dd0f8c84
test_modify_transcode_study
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
301
diff
changeset
|
6011 |
22b6dd0f8c84
test_modify_transcode_study
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
301
diff
changeset
|
6012 def test_modify_transcode_study(self): |
22b6dd0f8c84
test_modify_transcode_study
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
301
diff
changeset
|
6013 i = UploadInstance(_REMOTE, 'KarstenHilbertRF.dcm') |
22b6dd0f8c84
test_modify_transcode_study
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
301
diff
changeset
|
6014 self.assertEqual('1.2.840.10008.1.2.1', GetTransferSyntax( |
22b6dd0f8c84
test_modify_transcode_study
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
301
diff
changeset
|
6015 DoGet(_REMOTE, '/instances/%s/file' % i['ID']))) |
22b6dd0f8c84
test_modify_transcode_study
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
301
diff
changeset
|
6016 |
22b6dd0f8c84
test_modify_transcode_study
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
301
diff
changeset
|
6017 self.assertEqual(1, len(DoGet(_REMOTE, '/instances'))) |
22b6dd0f8c84
test_modify_transcode_study
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
301
diff
changeset
|
6018 j = DoPost(_REMOTE, '/studies/%s/modify' % i['ParentStudy'], { |
22b6dd0f8c84
test_modify_transcode_study
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
301
diff
changeset
|
6019 'Transcode' : '1.2.840.10008.1.2.4.50', |
22b6dd0f8c84
test_modify_transcode_study
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
301
diff
changeset
|
6020 'KeepSource' : False |
22b6dd0f8c84
test_modify_transcode_study
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
301
diff
changeset
|
6021 }) |
22b6dd0f8c84
test_modify_transcode_study
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
301
diff
changeset
|
6022 |
22b6dd0f8c84
test_modify_transcode_study
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
301
diff
changeset
|
6023 k = DoGet(_REMOTE, '/instances') |
22b6dd0f8c84
test_modify_transcode_study
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
301
diff
changeset
|
6024 self.assertEqual(1, len(k)) |
22b6dd0f8c84
test_modify_transcode_study
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
301
diff
changeset
|
6025 self.assertEqual(i['ID'], DoGet(_REMOTE, '/instances/%s/metadata?expand' % k[0]) ['ModifiedFrom']) |
22b6dd0f8c84
test_modify_transcode_study
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
301
diff
changeset
|
6026 self.assertEqual('1.2.840.10008.1.2.4.50', GetTransferSyntax( |
22b6dd0f8c84
test_modify_transcode_study
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
301
diff
changeset
|
6027 DoGet(_REMOTE, '/instances/%s/file' % k[0]))) |
22b6dd0f8c84
test_modify_transcode_study
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
301
diff
changeset
|
6028 |
305
ed20ead1a8b6
test_store_peer_transcoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
304
diff
changeset
|
6029 |
ed20ead1a8b6
test_store_peer_transcoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
304
diff
changeset
|
6030 def test_store_peer_transcoding(self): |
ed20ead1a8b6
test_store_peer_transcoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
304
diff
changeset
|
6031 i = UploadInstance(_REMOTE, 'KarstenHilbertRF.dcm')['ID'] |
ed20ead1a8b6
test_store_peer_transcoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
304
diff
changeset
|
6032 |
ed20ead1a8b6
test_store_peer_transcoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
304
diff
changeset
|
6033 SYNTAXES = [ |
ed20ead1a8b6
test_store_peer_transcoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
304
diff
changeset
|
6034 '1.2.840.10008.1.2', |
ed20ead1a8b6
test_store_peer_transcoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
304
diff
changeset
|
6035 '1.2.840.10008.1.2.1', |
ed20ead1a8b6
test_store_peer_transcoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
304
diff
changeset
|
6036 #'1.2.840.10008.1.2.1.99', # Deflated Explicit VR Little Endian (cannot be decoded in debug mode if Orthanc is statically linked against DCMTK 3.6.5) |
ed20ead1a8b6
test_store_peer_transcoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
304
diff
changeset
|
6037 '1.2.840.10008.1.2.2', |
ed20ead1a8b6
test_store_peer_transcoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
304
diff
changeset
|
6038 '1.2.840.10008.1.2.4.50', |
ed20ead1a8b6
test_store_peer_transcoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
304
diff
changeset
|
6039 '1.2.840.10008.1.2.4.51', |
ed20ead1a8b6
test_store_peer_transcoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
304
diff
changeset
|
6040 '1.2.840.10008.1.2.4.57', |
ed20ead1a8b6
test_store_peer_transcoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
304
diff
changeset
|
6041 '1.2.840.10008.1.2.4.70', |
ed20ead1a8b6
test_store_peer_transcoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
304
diff
changeset
|
6042 ] |
ed20ead1a8b6
test_store_peer_transcoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
304
diff
changeset
|
6043 |
ed20ead1a8b6
test_store_peer_transcoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
304
diff
changeset
|
6044 if HasGdcmPlugin(_REMOTE): |
ed20ead1a8b6
test_store_peer_transcoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
304
diff
changeset
|
6045 SYNTAXES = SYNTAXES + [ |
ed20ead1a8b6
test_store_peer_transcoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
304
diff
changeset
|
6046 '1.2.840.10008.1.2.4.80', # This makes DCMTK 3.6.2 crash |
ed20ead1a8b6
test_store_peer_transcoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
304
diff
changeset
|
6047 '1.2.840.10008.1.2.4.81', # This makes DCMTK 3.6.2 crash |
ed20ead1a8b6
test_store_peer_transcoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
304
diff
changeset
|
6048 '1.2.840.10008.1.2.4.90', # JPEG2k, unavailable without GDCM |
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6049 '1.2.840.10008.1.2.4.91', # JPEG2k, unavailable without GDCM |
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6050 ] |
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6051 |
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6052 for syntax in SYNTAXES: |
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6053 body = { |
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6054 'Resources' : [ i ], |
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6055 } |
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6056 |
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6057 if syntax != '1.2.840.10008.1.2.1': |
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6058 body['Transcode'] = syntax |
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6059 |
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6060 self.assertEqual(0, len(DoGet(_LOCAL, '/instances'))) |
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6061 self.assertEqual(1, len(DoGet(_REMOTE, '/instances'))) |
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6062 DoPost(_REMOTE, '/peers/peer/store', body, 'text/plain') |
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6063 self.assertEqual(1, len(DoGet(_LOCAL, '/instances'))) |
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6064 self.assertEqual(1, len(DoGet(_REMOTE, '/instances'))) |
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6065 self.assertEqual(syntax, GetTransferSyntax( |
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6066 DoGet(_LOCAL, '/instances/%s/file' % DoGet(_LOCAL, '/instances') [0]))) |
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6067 |
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6068 DropOrthanc(_LOCAL) |
308 | 6069 |
6070 | |
295 | 6071 def test_getscu(self): |
307 | 6072 def CleanTarget(): |
6073 if os.path.isdir('/tmp/GETSCU'): | |
6074 shutil.rmtree('/tmp/GETSCU') | |
6075 os.makedirs('/tmp/GETSCU') | |
6076 | |
306
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6077 env = {} |
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6078 if _DOCKER: |
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6079 # This is "getscu" from DCMTK 3.6.5 compiled using LSB, |
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6080 # and running in a GNU/Linux distribution running DCMTK |
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6081 # 3.6.0. Tell "getscu" where it can find the DICOM dictionary. |
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6082 env['DCMDICTPATH'] = '/usr/share/libdcmtk2/dicom.dic' |
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6083 |
295 | 6084 # no transcoding required |
307 | 6085 UploadInstance(_REMOTE, 'Brainix/Flair/IM-0001-0001.dcm')['ID'] |
6086 | |
6087 CleanTarget() | |
295 | 6088 |
306
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6089 subprocess.check_call([ |
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6090 FindExecutable('getscu'), |
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6091 _REMOTE['Server'], |
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6092 str(_REMOTE['DicomPort']), |
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6093 '-aec', 'ORTHANC', |
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6094 '-aet', 'ORTHANCTEST', # pretend to be the other orthanc |
307 | 6095 '-k', '0020,000d=2.16.840.1.113669.632.20.1211.10000357775', |
306
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6096 '-k', '0008,0052=STUDY', |
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6097 '--output-directory', '/tmp/GETSCU/' |
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6098 ], env = env) |
295 | 6099 |
311 | 6100 f1 = '/tmp/GETSCU/MR.1.3.46.670589.11.0.0.11.4.2.0.8743.5.5396.2006120114314079549' |
6101 self.assertTrue(os.path.isfile(f1)) | |
6102 with open(f1, 'rb') as f: | |
6103 self.assertEqual('1.2.840.10008.1.2.1', GetTransferSyntax(f.read())) | |
6104 | |
307 | 6105 CleanTarget() |
295 | 6106 |
6107 # transcoding required | |
311 | 6108 UploadInstance(_REMOTE, 'TransferSyntaxes/1.2.840.10008.1.2.4.50.dcm') |
307 | 6109 |
6110 subprocess.check_call([ | |
6111 FindExecutable('getscu'), | |
6112 _REMOTE['Server'], | |
6113 str(_REMOTE['DicomPort']), | |
6114 '-aec', 'ORTHANC', | |
6115 '-aet', 'ORTHANCTEST', # pretend to be the other orthanc | |
311 | 6116 '-k', '0020,000d=2.16.840.1.113669.632.20.1211.10000357775\\1.2.840.113663.1298.6234813.1.298.20000329.1115122', |
307 | 6117 '-k', '0008,0052=STUDY', |
6118 '--output-directory', '/tmp/GETSCU/' | |
6119 ], env = env) | |
6120 | |
311 | 6121 self.assertTrue(os.path.isfile(f1)) |
6122 with open(f1, 'rb') as f: | |
6123 self.assertEqual('1.2.840.10008.1.2.1', GetTransferSyntax(f.read())) | |
6124 | |
6125 # This file is transcoded from "1.2.840.10008.1.2.4.50" to "1.2.840.10008.1.2.1" | |
6126 # (LittleEndianExplicit is proposed by default by "getscu") | |
6127 f2 = '/tmp/GETSCU/US.1.2.840.113663.1298.1.3.715.20000329.1115326' | |
6128 self.assertTrue(os.path.isfile(f2)) | |
6129 with open(f2, 'rb') as f: | |
6130 self.assertEqual('1.2.840.10008.1.2.1', GetTransferSyntax(f.read())) | |
324
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6131 |
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6132 |
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6133 def test_findscu_truncation(self): |
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6134 # https://groups.google.com/forum/#!msg/orthanc-users/FkckWAHvso8/UbRBAhQ5CwAJ |
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6135 # Fixed by: https://hg.orthanc-server.com/orthanc/rev/2724977419fb |
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6136 UploadInstance(_REMOTE, 'Multiframe.dcm') |
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6137 UploadInstance(_REMOTE, 'ColorTestImageJ.dcm') |
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6138 |
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6139 study = '1.3.46.670589.7.5.8.80001255161.20000323.151537.1' |
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6140 |
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6141 i = CallFindScu([ '-k', '0008,0052=STUDY', '-k', 'StudyInstanceUID' ]) |
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6142 result = re.findall('\(0020,000d\).*?\[(.*?)\]', i) |
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6143 self.assertEqual(2, len(result)) |
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|
6144 |
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6145 # The "StudyInstanceUID" is set as a list of 5 times the same |
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6146 # study, leading to a string of 249 characters |
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6147 i = CallFindScu([ '-k', '0008,0052=STUDY', '-k', |
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6148 'StudyInstanceUID=%s\\%s\\%s\\%s\\%s' % (( study, ) * 5) ]) |
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|
6149 result = re.findall('\(0020,000d\).*?\[(.*?)\]', i) |
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6150 self.assertEqual(1, len(result)) |
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|
6151 |
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6152 # The "StudyInstanceUID" is set as a list of 6 times the same |
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6153 # study, leading to a string of 299 characters. In Orthanc <= |
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6154 # 1.7.2, this is above the value of ORTHANC_MAXIMUM_TAG_LENGTH |
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6155 # == 256, and is thus wiped out by C-FIND SCP. As a |
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6156 # consequence, Orthanc <= 1.7.2 doesn't apply the filter on |
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6157 # "StudyInstanceUID" and returns all the available |
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6158 # studies (i.e. 2). This issue was fixed in Orthanc 1.7.3. |
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6159 i = CallFindScu([ '-k', '0008,0052=STUDY', '-k', |
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6160 'StudyInstanceUID=%s\\%s\\%s\\%s\\%s\\%s' % (( study, ) * 6) ]) |
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6161 result = re.findall('\(0020,000d\).*?\[(.*?)\]', i) |
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6162 self.assertEqual(1, len(result)) |
328
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6163 |
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6164 |
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6165 def test_store_compressed(self): |
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6166 with open(GetDatabasePath('DummyCT.dcm'), 'rb') as f: |
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6167 dicom = f.read() |
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6168 i = DoPost(_REMOTE, '/instances', dicom) ['ID'] |
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6169 sourceSize = len(dicom) |
324
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6170 |
328
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6171 self.assertEqual(0, len(DoGet(_LOCAL, '/instances'))) |
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6172 self.assertEqual(1, len(DoGet(_REMOTE, '/instances'))) |
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6173 |
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6174 # Sending to the local Orthanc 0.8.6 server, without compression: OK |
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6175 jobId = MonitorJob2(_REMOTE, lambda: DoPost( |
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6176 _REMOTE, '/peers/peer/store', { |
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6177 'Resources' : [ i ], |
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6178 'Synchronous' : False, |
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6179 })) |
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6180 |
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6181 job = DoGet(_REMOTE, '/jobs/%s' % jobId) |
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6182 self.assertFalse(job['Content']['Compress']) |
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6183 self.assertEqual('', job['Content']['Peer'][2]) # Password must not be reported |
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6184 self.assertEqual(str(sourceSize), job['Content']['Size']) |
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6185 |
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6186 self.assertEqual(1, len(DoGet(_LOCAL, '/instances'))) |
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6187 DropOrthanc(_LOCAL) |
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6188 |
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6189 # Sending to the local Orthanc 0.8.6 server, with compression: |
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6190 # Not supported by Orthanc 0.8.6 => failure |
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6191 self.assertRaises(Exception, lambda: DoPost(_REMOTE, '/peers/peer/store', { |
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6192 'Resources' : [ i ], |
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6193 'Compress' : True, |
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6194 })) |
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6195 self.assertEqual(0, len(DoGet(_LOCAL, '/instances'))) |
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6196 |
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6197 # Sending to the tested remote server, with compression: OK |
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6198 jobId = MonitorJob2(_REMOTE, lambda: DoPost( |
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6199 _REMOTE, '/peers/self/store', { |
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6200 'Resources' : [ i ], |
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6201 'Compress' : True, |
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6202 'Synchronous' : False, |
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6203 })) |
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6204 |
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6205 job = DoGet(_REMOTE, '/jobs/%s' % jobId) |
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6206 self.assertTrue(job['Content']['Compress']) |
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6207 |
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6208 # Compression must have divided the size of the sent data at least twice |
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6209 self.assertLess(int(job['Content']['Size']), sourceSize / 2) |
332 | 6210 |
6211 | |
6212 def test_move_ambra(self): | |
6213 # "Orthanc + Ambra: Query/Retrieve" (2020-08-25) | |
6214 # https://groups.google.com/g/orthanc-users/c/yIUnZ9v9-Zs/m/GQPXiAOiCQAJ | |
6215 | |
6216 UploadInstance(_REMOTE, '2019-06-17-VedranZdesic.dcm') | |
6217 | |
6218 self.assertFalse(MonitorJob(_REMOTE, lambda: CallMoveScu([ | |
6219 '--study', | |
6220 '-k', 'StudyInstanceUID=' | |
6221 ]))) | |
6222 | |
6223 self.assertFalse(MonitorJob(_REMOTE, lambda: CallMoveScu([ | |
6224 '--study', | |
6225 '-k', 'AccessionNumber=', | |
6226 ]))) | |
6227 | |
6228 self.assertFalse(MonitorJob(_REMOTE, lambda: CallMoveScu([ | |
6229 '--study', | |
6230 '-k', 'AccessionNumber=', | |
6231 '-k', 'StudyInstanceUID=' | |
6232 ]))) | |
6233 | |
6234 self.assertEqual(0, len(DoGet(_LOCAL, '/instances'))) | |
6235 self.assertTrue(MonitorJob(_REMOTE, lambda: CallMoveScu([ | |
6236 '--study', | |
6237 '-k', 'AccessionNumber=CT16000988', | |
6238 '-k', 'StudyInstanceUID=', | |
6239 ]))) | |
6240 self.assertEqual(1, len(DoGet(_LOCAL, '/instances'))) | |
6241 DropOrthanc(_LOCAL) | |
6242 | |
6243 self.assertEqual(0, len(DoGet(_LOCAL, '/instances'))) | |
6244 self.assertTrue(MonitorJob(_REMOTE, lambda: CallMoveScu([ | |
6245 '--study', | |
6246 '-k', 'AccessionNumber=CT16000988', | |
6247 '-k', 'StudyInstanceUID=1.2.840.113619.2.278.3.4194965761.659.1468842739.39', | |
6248 ]))) | |
6249 self.assertEqual(1, len(DoGet(_LOCAL, '/instances'))) | |
6250 DropOrthanc(_LOCAL) | |
6251 | |
6252 # This fails on Orthanc <= 1.7.3 | |
6253 self.assertEqual(0, len(DoGet(_LOCAL, '/instances'))) | |
6254 self.assertTrue(MonitorJob(_REMOTE, lambda: CallMoveScu([ | |
6255 '--study', | |
6256 '-k', 'AccessionNumber=', | |
6257 '-k', 'StudyInstanceUID=1.2.840.113619.2.278.3.4194965761.659.1468842739.39' | |
6258 ]))) | |
6259 self.assertEqual(1, len(DoGet(_LOCAL, '/instances'))) | |
6260 DropOrthanc(_LOCAL) | |
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6261 |
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6262 |
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6263 def test_decode_elscint(self): |
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6264 # https://groups.google.com/g/orthanc-users/c/d9anAx6lSis/m/qEzm1x3PAAAJ |
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6265 a = UploadInstance(_REMOTE, '2020-09-12-ELSCINT1-PMSCT_RLE1.dcm')['ID'] |
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6266 b = UploadInstance(_REMOTE, '2020-09-11-Christopher-ELSCINT1-Raw.dcm')['ID'] |
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6267 |
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6268 im = GetImage(_REMOTE, '/instances/%s/frames/0/preview' % a) |
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6269 self.assertEqual("L", im.mode) |
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6270 self.assertEqual(512, im.size[0]) |
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6271 self.assertEqual(512, im.size[1]) |
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6272 |
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6273 im = GetImage(_REMOTE, '/instances/%s/frames/0/preview' % b) |
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6274 self.assertEqual("L", im.mode) |
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6275 self.assertEqual(512, im.size[0]) |
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6276 self.assertEqual(512, im.size[1]) |
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6277 |
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6278 # The two tests below fail on Orthanc <= 1.7.3 |
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6279 raw = DoGet(_REMOTE, '/instances/%s/frames/0/raw' % a) |
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6280 self.assertEqual(512 * 512 * 2, len(raw)) |
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6281 |
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6282 raw = DoGet(_REMOTE, '/instances/%s/frames/0/raw' % b) |
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6283 self.assertEqual(512 * 512 * 2, len(raw)) |
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6284 |
334
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6285 |
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|
6286 def test_rest_modalities_in_study_2(self): |
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6287 # Problem reported by Alain Mazy on 2020-09-15 |
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6288 UploadInstance(_REMOTE, 'Comunix/Ct/IM-0001-0001.dcm') |
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6289 UploadInstance(_REMOTE, 'Comunix/Pet/IM-0001-0001.dcm') |
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6290 |
335
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6291 i = CallFindScu([ '-k', '0008,0052=STUDY', '-k', '0020,000d=', '-k', '0008,0061=' ]) |
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6292 modalitiesInStudy = re.findall('\(0008,0061\).*?\[(.*?)\]', i) |
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6293 self.assertEqual(1, len(modalitiesInStudy)) |
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6294 self.assertEqual('CT\\PT ', modalitiesInStudy[0]) |
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6295 |
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6296 for i in [ '', 'CT', 'PT', 'UX', 'UX\\MR', 'CT\\PT', 'UX\\PT', 'CT\\PT', 'UX\\CT\\PT' ]: |
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6297 # The empty string '' corresponds to universal matching. |
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6298 # The case where "i == 'CT'" failed in Orthanc <= 1.7.3. |
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6299 |
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|
6300 if i in [ 'UX', 'UX\\MR' ]: |
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6301 expected = 0 |
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6302 else: |
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6303 expected = 1 |
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6304 |
334
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6305 a = DoPost(_REMOTE, '/tools/find', { 'Level' : 'Study', |
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6306 'Query' : { 'ModalitiesInStudy' : i }}) |
335
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6307 self.assertEqual(expected, len(a)) |
334
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6308 |
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6309 i = CallFindScu([ '-k', '0008,0052=STUDY', '-k', '0020,000d=', '-k', '0008,0061=%s' % i ]) |
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6310 studyInstanceUid = re.findall('\(0020,000d\).*?\[(.*?)\]', i) |
335
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6311 self.assertEqual(expected, len(studyInstanceUid)) |
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6312 |
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6313 |
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6314 def test_webdav(self): |
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6315 self.assertRaises(Exception, lambda: DoPropFind(_REMOTE, '/webdav/', 2)) |
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6316 |
342
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6317 for suffix in [ '', '/' ]: |
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6318 f = DoPropFind(_REMOTE, '/webdav' + suffix, 0) |
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6319 self.assertEqual(1, len(f)) |
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6320 self.assertTrue('/webdav/' in f.keys()) |
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6321 self.assertTrue(f['/webdav/']['folder']) |
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6322 self.assertEqual('webdav', f['/webdav/']['displayname']) |
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|
6323 |
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6324 f = DoPropFind(_REMOTE, '/webdav' + suffix, 1) |
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6325 self.assertEqual(6, len(f)) |
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6326 self.assertTrue(f['/webdav/']['folder']) |
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6327 self.assertEqual('webdav', f['/webdav/']['displayname']) |
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6328 |
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6329 for i in [ 'by-dates', 'by-patients', 'by-studies', 'by-uids', 'uploads' ]: |
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6330 self.assertTrue(f['/webdav/%s' % i]['folder']) |
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6331 self.assertEqual(i, f['/webdav/%s' % i]['displayname']) |
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6332 |
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6333 for depth in [ 0, 1 ]: |
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6334 for suffix2 in [ '', '/' ]: |
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6335 g = DoPropFind(_REMOTE, '/webdav/%s%s' % (i, suffix2), depth) |
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6336 |
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6337 if i == 'uploads': |
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changeset
|
6338 # Empty folders might still exist in "/uploads/" |
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6339 self.assertTrue('/webdav/uploads/' in g) |
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|
6340 self.assertEqual('uploads', g['/webdav/uploads/']['displayname']) |
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|
6341 for j in g.items(): |
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diff
changeset
|
6342 self.assertTrue(g.items()[0][1]['folder']) |
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diff
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|
6343 else: |
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diff
changeset
|
6344 self.assertEqual(1, len(g)) |
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diff
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|
6345 self.assertEqual('/webdav/%s/' % i, g.items()[0][0]) |
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diff
changeset
|
6346 self.assertTrue(g.items()[0][1]['folder']) |
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more tests of webdav
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diff
changeset
|
6347 self.assertEqual(i, g.items()[0][1]['displayname']) |
341
66a36befb208
extending Toolbox.DoPropFind()
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337
diff
changeset
|
6348 |
342
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diff
changeset
|
6349 self.assertEqual(0, len(DoGet(_REMOTE, '/patients'))) |
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diff
changeset
|
6350 with open(GetDatabasePath('DummyCT.dcm'), 'rb') as f: |
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diff
changeset
|
6351 DoPut(_REMOTE, '/webdav/uploads/dummy', f.read(), 'text/plain') |
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diff
changeset
|
6352 |
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diff
changeset
|
6353 while len(DoGet(_REMOTE, '/patients')) == 0: |
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diff
changeset
|
6354 time.sleep(0.01) |
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diff
changeset
|
6355 self.assertEqual(1, len(DoGet(_REMOTE, '/patients'))) |
337
ec13ace43bde
trying webdav tests
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diff
changeset
|
6356 |
349
698898a93a10
test_log_categories
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348
diff
changeset
|
6357 |
698898a93a10
test_log_categories
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diff
changeset
|
6358 def test_log_categories(self): |
350 | 6359 original = DoGet(_REMOTE, '/tools/log-level-http') |
349
698898a93a10
test_log_categories
Sebastien Jodogne <s.jodogne@gmail.com>
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diff
changeset
|
6360 |
350 | 6361 DoPut(_REMOTE, '/tools/log-level-http', 'default') |
6362 self.assertEqual('default', DoGet(_REMOTE, '/tools/log-level-http')) | |
349
698898a93a10
test_log_categories
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diff
changeset
|
6363 DoGet(_REMOTE, '/system') |
698898a93a10
test_log_categories
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parents:
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diff
changeset
|
6364 |
350 | 6365 DoPut(_REMOTE, '/tools/log-level-http', 'verbose') |
6366 self.assertEqual('verbose', DoGet(_REMOTE, '/tools/log-level-http')) | |
349
698898a93a10
test_log_categories
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
348
diff
changeset
|
6367 DoGet(_REMOTE, '/system') |
698898a93a10
test_log_categories
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parents:
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diff
changeset
|
6368 |
350 | 6369 DoPut(_REMOTE, '/tools/log-level-http', 'trace') |
6370 self.assertEqual('trace', DoGet(_REMOTE, '/tools/log-level-http')) | |
349
698898a93a10
test_log_categories
Sebastien Jodogne <s.jodogne@gmail.com>
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diff
changeset
|
6371 DoGet(_REMOTE, '/system') |
698898a93a10
test_log_categories
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diff
changeset
|
6372 |
350 | 6373 self.assertRaises(Exception, lambda: DoPut(_REMOTE, '/tools/log-level-http', 'nope')) |
349
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test_log_categories
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diff
changeset
|
6374 |
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test_log_categories
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diff
changeset
|
6375 # Switch back to the original log level |
350 | 6376 DoPut(_REMOTE, '/tools/log-level-http', original) |
6377 | |
6378 for c in [ 'generic', 'http', 'dicom', 'plugins', 'sqlite', 'lua', 'jobs' ]: | |
349
698898a93a10
test_log_categories
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diff
changeset
|
6379 DoPut(_REMOTE, '/tools/log-level-%s' % c, DoGet(_REMOTE, '/tools/log-level-%s' % c)) |
698898a93a10
test_log_categories
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diff
changeset
|
6380 |
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test_log_categories
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diff
changeset
|
6381 self.assertRaises(Exception, lambda: DoPut(_REMOTE, '/tools/log-level-nope', 'default')) |
357 | 6382 |
6383 | |
6384 def test_upload_zip(self): | |
6385 f = StringIO() | |
6386 with zipfile.ZipFile(f, 'w') as z: | |
6387 z.writestr('hello/world/invalid.txt', 'Hello world') | |
6388 with open(GetDatabasePath('DummyCT.dcm'), 'rb') as g: | |
6389 c = g.read() | |
6390 z.writestr('hello/world/dicom1.dcm', c) | |
6391 z.writestr('hello/world/dicom2.dcm', c) | |
6392 | |
6393 f.seek(0) | |
6394 i = DoPost(_REMOTE, '/instances', f.read()) | |
6395 | |
6396 self.assertEqual(2, len(i)) | |
6397 self.assertEqual(i[0], i[1]) | |
6398 self.assertEqual(6, len(i[0])) | |
6399 self.assertEqual('66a662ce-7430e543-bad44d47-0dc5a943-ec7a538d', i[0]['ID']) | |
6400 self.assertEqual('f2635388-f01d497a-15f7c06b-ad7dba06-c4c599fe', i[0]['ParentSeries']) | |
6401 self.assertEqual('b9c08539-26f93bde-c81ab0d7-bffaf2cb-a4d0bdd0', i[0]['ParentStudy']) | |
6402 self.assertEqual('6816cb19-844d5aee-85245eba-28e841e6-2414fae2', i[0]['ParentPatient']) | |
6403 self.assertEqual('/instances/66a662ce-7430e543-bad44d47-0dc5a943-ec7a538d', i[0]['Path']) | |
6404 | |
6405 # Both are "Success" (instead of one "AlreadyStored"), because "OverwriteInstance" is true | |
6406 self.assertEqual('Success', i[0]['Status']) | |
361
6cf5cc4d0a99
test_transfer_syntax_no_metaheader
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
359
diff
changeset
|
6407 |
6cf5cc4d0a99
test_transfer_syntax_no_metaheader
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
359
diff
changeset
|
6408 |
6cf5cc4d0a99
test_transfer_syntax_no_metaheader
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
359
diff
changeset
|
6409 def test_transfer_syntax_no_metaheader(self): |
6cf5cc4d0a99
test_transfer_syntax_no_metaheader
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
359
diff
changeset
|
6410 a = UploadInstance(_REMOTE, 'TransferSyntaxes/1.2.840.10008.1.2.dcm')['ID'] |
6cf5cc4d0a99
test_transfer_syntax_no_metaheader
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
359
diff
changeset
|
6411 m = DoGet(_REMOTE, '/instances/%s/metadata?expand' % a) |
6cf5cc4d0a99
test_transfer_syntax_no_metaheader
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diff
changeset
|
6412 self.assertEqual('1.2.840.10008.5.1.4.1.1.4', m['SopClassUid']) |
6cf5cc4d0a99
test_transfer_syntax_no_metaheader
Sebastien Jodogne <s.jodogne@gmail.com>
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diff
changeset
|
6413 |
6cf5cc4d0a99
test_transfer_syntax_no_metaheader
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
359
diff
changeset
|
6414 # This fails on Orthanc <= 1.8.1 |
6cf5cc4d0a99
test_transfer_syntax_no_metaheader
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
359
diff
changeset
|
6415 self.assertTrue('TransferSyntax' in m) |
6cf5cc4d0a99
test_transfer_syntax_no_metaheader
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
359
diff
changeset
|
6416 self.assertEqual('1.2.840.10008.1.2', m['TransferSyntax']) |
368
2cc40121c3a8
test_upload_multipart_1 and test_upload_multipart_2
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
363
diff
changeset
|
6417 |
2cc40121c3a8
test_upload_multipart_1 and test_upload_multipart_2
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
363
diff
changeset
|
6418 |
2cc40121c3a8
test_upload_multipart_1 and test_upload_multipart_2
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
363
diff
changeset
|
6419 def test_upload_multipart_1(self): |
2cc40121c3a8
test_upload_multipart_1 and test_upload_multipart_2
Sebastien Jodogne <s.jodogne@gmail.com>
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diff
changeset
|
6420 # This tests the "Upload" button in Orthanc Explorer |
2cc40121c3a8
test_upload_multipart_1 and test_upload_multipart_2
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parents:
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diff
changeset
|
6421 |
2cc40121c3a8
test_upload_multipart_1 and test_upload_multipart_2
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parents:
363
diff
changeset
|
6422 def EncodeChunk(data, boundary, filename): |
2cc40121c3a8
test_upload_multipart_1 and test_upload_multipart_2
Sebastien Jodogne <s.jodogne@gmail.com>
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diff
changeset
|
6423 return (('--%s\r\n' + |
2cc40121c3a8
test_upload_multipart_1 and test_upload_multipart_2
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
changeset
|
6424 'Content-Disposition : form-data ; name ="files[]" ; filename = "%s" \r\n' + |
2cc40121c3a8
test_upload_multipart_1 and test_upload_multipart_2
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
changeset
|
6425 '\r\n%s\r\n') % (boundary, filename, data)) |
2cc40121c3a8
test_upload_multipart_1 and test_upload_multipart_2
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
363
diff
changeset
|
6426 |
2cc40121c3a8
test_upload_multipart_1 and test_upload_multipart_2
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
363
diff
changeset
|
6427 with open(GetDatabasePath('DummyCT.dcm'), 'rb') as f: |
2cc40121c3a8
test_upload_multipart_1 and test_upload_multipart_2
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
363
diff
changeset
|
6428 dcm1 = f.read() |
2cc40121c3a8
test_upload_multipart_1 and test_upload_multipart_2
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
363
diff
changeset
|
6429 |
2cc40121c3a8
test_upload_multipart_1 and test_upload_multipart_2
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
363
diff
changeset
|
6430 with open(GetDatabasePath('ColorTestMalaterre.dcm'), 'rb') as f: |
2cc40121c3a8
test_upload_multipart_1 and test_upload_multipart_2
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
changeset
|
6431 dcm2 = f.read() |
2cc40121c3a8
test_upload_multipart_1 and test_upload_multipart_2
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
changeset
|
6432 |
2cc40121c3a8
test_upload_multipart_1 and test_upload_multipart_2
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
363
diff
changeset
|
6433 self.assertEqual(0, len(DoGet(_REMOTE, '/instances'))) |
2cc40121c3a8
test_upload_multipart_1 and test_upload_multipart_2
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
363
diff
changeset
|
6434 |
2cc40121c3a8
test_upload_multipart_1 and test_upload_multipart_2
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
363
diff
changeset
|
6435 boundary = '----WebKitFormBoundarypJDNQqJPoXiorRmQ' |
2cc40121c3a8
test_upload_multipart_1 and test_upload_multipart_2
Sebastien Jodogne <s.jodogne@gmail.com>
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diff
changeset
|
6436 m = DoPost(_REMOTE, '/instances', (EncodeChunk(dcm1, boundary, 'DummyCT.dcm') + |
2cc40121c3a8
test_upload_multipart_1 and test_upload_multipart_2
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
363
diff
changeset
|
6437 EncodeChunk(dcm2, boundary, 'ColorTestMalaterre.dcm') + |
2cc40121c3a8
test_upload_multipart_1 and test_upload_multipart_2
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diff
changeset
|
6438 '--' + boundary + '--'), headers = { |
2cc40121c3a8
test_upload_multipart_1 and test_upload_multipart_2
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diff
changeset
|
6439 'Content-Type' : 'multipart/form-data ; boundary = %s ' % boundary, |
2cc40121c3a8
test_upload_multipart_1 and test_upload_multipart_2
Sebastien Jodogne <s.jodogne@gmail.com>
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diff
changeset
|
6440 'X-Requested-With' : 'XMLHttpRequest', |
2cc40121c3a8
test_upload_multipart_1 and test_upload_multipart_2
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diff
changeset
|
6441 }) |
2cc40121c3a8
test_upload_multipart_1 and test_upload_multipart_2
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diff
changeset
|
6442 |
2cc40121c3a8
test_upload_multipart_1 and test_upload_multipart_2
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diff
changeset
|
6443 self.assertEqual(2, len(DoGet(_REMOTE, '/instances'))) |
2cc40121c3a8
test_upload_multipart_1 and test_upload_multipart_2
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diff
changeset
|
6444 |
2cc40121c3a8
test_upload_multipart_1 and test_upload_multipart_2
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diff
changeset
|
6445 |
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test_upload_multipart_1 and test_upload_multipart_2
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diff
changeset
|
6446 def test_upload_multipart_2(self): |
2cc40121c3a8
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diff
changeset
|
6447 # This tests the "maxChunkSize" option of "jQuery File Upload |
2cc40121c3a8
test_upload_multipart_1 and test_upload_multipart_2
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diff
changeset
|
6448 # 5.12", whose source code can be found in: |
2cc40121c3a8
test_upload_multipart_1 and test_upload_multipart_2
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diff
changeset
|
6449 # "OrthancServer/OrthancExplorer/libs/jquery-file-upload/" |
2cc40121c3a8
test_upload_multipart_1 and test_upload_multipart_2
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diff
changeset
|
6450 |
2cc40121c3a8
test_upload_multipart_1 and test_upload_multipart_2
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diff
changeset
|
6451 def EncodeBody(data, boundary, filename): |
2cc40121c3a8
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diff
changeset
|
6452 return (('--%s\r\n' + |
2cc40121c3a8
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diff
changeset
|
6453 'Content-Disposition: form-data; name="files[]"; filename="%s"\r\n' + |
2cc40121c3a8
test_upload_multipart_1 and test_upload_multipart_2
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diff
changeset
|
6454 '\r\n%s\r\n--%s') % (boundary, filename, data, boundary)) |
2cc40121c3a8
test_upload_multipart_1 and test_upload_multipart_2
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diff
changeset
|
6455 |
2cc40121c3a8
test_upload_multipart_1 and test_upload_multipart_2
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diff
changeset
|
6456 with open(GetDatabasePath('DummyCT.dcm'), 'rb') as f: |
2cc40121c3a8
test_upload_multipart_1 and test_upload_multipart_2
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diff
changeset
|
6457 dcm = f.read() |
2cc40121c3a8
test_upload_multipart_1 and test_upload_multipart_2
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diff
changeset
|
6458 |
2cc40121c3a8
test_upload_multipart_1 and test_upload_multipart_2
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363
diff
changeset
|
6459 with open(GetDatabasePath('ColorTestMalaterre.dcm'), 'rb') as f: |
2cc40121c3a8
test_upload_multipart_1 and test_upload_multipart_2
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diff
changeset
|
6460 dcm2 = f.read() |
2cc40121c3a8
test_upload_multipart_1 and test_upload_multipart_2
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diff
changeset
|
6461 |
2cc40121c3a8
test_upload_multipart_1 and test_upload_multipart_2
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diff
changeset
|
6462 boundary = '----WebKitFormBoundarypJDNQqJPoXiorRmQ' |
2cc40121c3a8
test_upload_multipart_1 and test_upload_multipart_2
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diff
changeset
|
6463 |
2cc40121c3a8
test_upload_multipart_1 and test_upload_multipart_2
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diff
changeset
|
6464 self.assertEqual(0, len(DoGet(_REMOTE, '/instances'))) |
2cc40121c3a8
test_upload_multipart_1 and test_upload_multipart_2
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diff
changeset
|
6465 m = DoPost(_REMOTE, '/instances', |
2cc40121c3a8
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changeset
|
6466 EncodeBody(dcm[0:1000], boundary, 'DummyCT.dcm'), |
2cc40121c3a8
test_upload_multipart_1 and test_upload_multipart_2
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
363
diff
changeset
|
6467 headers = { |
2cc40121c3a8
test_upload_multipart_1 and test_upload_multipart_2
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
363
diff
changeset
|
6468 'Content-Type' : 'multipart/form-data; boundary=%s' % boundary, |
2cc40121c3a8
test_upload_multipart_1 and test_upload_multipart_2
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
363
diff
changeset
|
6469 'X-Requested-With' : 'XMLHttpRequest', |
2cc40121c3a8
test_upload_multipart_1 and test_upload_multipart_2
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
363
diff
changeset
|
6470 'X-File-Name' : 'DummyCT.dcm', |
2cc40121c3a8
test_upload_multipart_1 and test_upload_multipart_2
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
363
diff
changeset
|
6471 'X-File-Size' : str(len(dcm)), |
2cc40121c3a8
test_upload_multipart_1 and test_upload_multipart_2
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
363
diff
changeset
|
6472 }) |
2cc40121c3a8
test_upload_multipart_1 and test_upload_multipart_2
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
363
diff
changeset
|
6473 |
2cc40121c3a8
test_upload_multipart_1 and test_upload_multipart_2
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
363
diff
changeset
|
6474 self.assertEqual(0, len(DoGet(_REMOTE, '/instances'))) |
2cc40121c3a8
test_upload_multipart_1 and test_upload_multipart_2
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
363
diff
changeset
|
6475 m = DoPost(_REMOTE, '/instances', |
2cc40121c3a8
test_upload_multipart_1 and test_upload_multipart_2
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
363
diff
changeset
|
6476 EncodeBody(dcm[1000:2000], boundary, 'DummyCT.dcm'), |
2cc40121c3a8
test_upload_multipart_1 and test_upload_multipart_2
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
363
diff
changeset
|
6477 headers = { |
2cc40121c3a8
test_upload_multipart_1 and test_upload_multipart_2
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
363
diff
changeset
|
6478 'Content-Type' : 'multipart/form-data; boundary=%s' % boundary, |
2cc40121c3a8
test_upload_multipart_1 and test_upload_multipart_2
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
363
diff
changeset
|
6479 'X-Requested-With' : 'XMLHttpRequest', |
2cc40121c3a8
test_upload_multipart_1 and test_upload_multipart_2
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
363
diff
changeset
|
6480 'X-File-Name' : 'DummyCT.dcm', |
2cc40121c3a8
test_upload_multipart_1 and test_upload_multipart_2
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
363
diff
changeset
|
6481 'X-File-Size' : str(len(dcm)), |
2cc40121c3a8
test_upload_multipart_1 and test_upload_multipart_2
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
363
diff
changeset
|
6482 }) |
2cc40121c3a8
test_upload_multipart_1 and test_upload_multipart_2
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
363
diff
changeset
|
6483 self.assertEqual(0, len(DoGet(_REMOTE, '/instances'))) |
2cc40121c3a8
test_upload_multipart_1 and test_upload_multipart_2
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
363
diff
changeset
|
6484 |
2cc40121c3a8
test_upload_multipart_1 and test_upload_multipart_2
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
363
diff
changeset
|
6485 m = DoPost(_REMOTE, '/instances', |
2cc40121c3a8
test_upload_multipart_1 and test_upload_multipart_2
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
363
diff
changeset
|
6486 EncodeBody(dcm2, boundary, 'ColorTestMalaterre.dcm'), |
2cc40121c3a8
test_upload_multipart_1 and test_upload_multipart_2
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
363
diff
changeset
|
6487 headers = { |
2cc40121c3a8
test_upload_multipart_1 and test_upload_multipart_2
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
363
diff
changeset
|
6488 'Content-Type' : 'multipart/form-data; boundary=%s' % boundary, |
2cc40121c3a8
test_upload_multipart_1 and test_upload_multipart_2
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
363
diff
changeset
|
6489 'X-Requested-With' : 'XMLHttpRequest', |
2cc40121c3a8
test_upload_multipart_1 and test_upload_multipart_2
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
363
diff
changeset
|
6490 'X-File-Name' : 'ColorTestMalaterre.dcm', |
2cc40121c3a8
test_upload_multipart_1 and test_upload_multipart_2
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
363
diff
changeset
|
6491 'X-File-Size' : str(len(dcm2)), |
2cc40121c3a8
test_upload_multipart_1 and test_upload_multipart_2
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
363
diff
changeset
|
6492 }) |
2cc40121c3a8
test_upload_multipart_1 and test_upload_multipart_2
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
363
diff
changeset
|
6493 |
2cc40121c3a8
test_upload_multipart_1 and test_upload_multipart_2
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
363
diff
changeset
|
6494 self.assertEqual(1, len(DoGet(_REMOTE, '/instances'))) |
2cc40121c3a8
test_upload_multipart_1 and test_upload_multipart_2
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
363
diff
changeset
|
6495 |
2cc40121c3a8
test_upload_multipart_1 and test_upload_multipart_2
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
363
diff
changeset
|
6496 # Upload the last chunk => the file is now entirely available |
2cc40121c3a8
test_upload_multipart_1 and test_upload_multipart_2
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
363
diff
changeset
|
6497 m = DoPost(_REMOTE, '/instances', |
2cc40121c3a8
test_upload_multipart_1 and test_upload_multipart_2
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
363
diff
changeset
|
6498 EncodeBody(dcm[2000:len(dcm)], boundary, 'DummyCT.dcm'), |
2cc40121c3a8
test_upload_multipart_1 and test_upload_multipart_2
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
363
diff
changeset
|
6499 headers = { |
2cc40121c3a8
test_upload_multipart_1 and test_upload_multipart_2
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
363
diff
changeset
|
6500 'Content-Type' : 'multipart/form-data; boundary=%s' % boundary, |
2cc40121c3a8
test_upload_multipart_1 and test_upload_multipart_2
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
363
diff
changeset
|
6501 'X-Requested-With' : 'XMLHttpRequest', |
2cc40121c3a8
test_upload_multipart_1 and test_upload_multipart_2
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
363
diff
changeset
|
6502 'X-File-Name' : 'DummyCT.dcm', |
2cc40121c3a8
test_upload_multipart_1 and test_upload_multipart_2
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
363
diff
changeset
|
6503 'X-File-Size' : str(len(dcm)), |
2cc40121c3a8
test_upload_multipart_1 and test_upload_multipart_2
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
363
diff
changeset
|
6504 }) |
2cc40121c3a8
test_upload_multipart_1 and test_upload_multipart_2
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
363
diff
changeset
|
6505 |
2cc40121c3a8
test_upload_multipart_1 and test_upload_multipart_2
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
363
diff
changeset
|
6506 self.assertEqual(2, len(DoGet(_REMOTE, '/instances'))) |
377
cc79fa4945da
test_pixel_data_offset
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
374
diff
changeset
|
6507 |
cc79fa4945da
test_pixel_data_offset
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
374
diff
changeset
|
6508 |
cc79fa4945da
test_pixel_data_offset
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
374
diff
changeset
|
6509 def test_pixel_data_offset(self): |
cc79fa4945da
test_pixel_data_offset
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
374
diff
changeset
|
6510 # New in Orthanc 1.9.1 |
cc79fa4945da
test_pixel_data_offset
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
374
diff
changeset
|
6511 def Check(path, offset): |
cc79fa4945da
test_pixel_data_offset
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
374
diff
changeset
|
6512 i = UploadInstance(_REMOTE, path) ['ID'] |
cc79fa4945da
test_pixel_data_offset
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
374
diff
changeset
|
6513 metadata = DoGetRaw(_REMOTE, '/instances/%s/metadata/PixelDataOffset' % i) [1] |
cc79fa4945da
test_pixel_data_offset
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
374
diff
changeset
|
6514 self.assertEqual(offset, metadata) |
cc79fa4945da
test_pixel_data_offset
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
374
diff
changeset
|
6515 |
cc79fa4945da
test_pixel_data_offset
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
374
diff
changeset
|
6516 Check('ColorTestMalaterre.dcm', str(0x03a0)) |
cc79fa4945da
test_pixel_data_offset
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
374
diff
changeset
|
6517 Check('TransferSyntaxes/1.2.840.10008.1.2.1.dcm', str(0x037c)) |
cc79fa4945da
test_pixel_data_offset
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
374
diff
changeset
|
6518 Check('TransferSyntaxes/1.2.840.10008.1.2.2.dcm', str(0x03e8)) # Big endian |
cc79fa4945da
test_pixel_data_offset
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
374
diff
changeset
|
6519 Check('TransferSyntaxes/1.2.840.10008.1.2.4.50.dcm', str(0x04ac)) |
cc79fa4945da
test_pixel_data_offset
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
374
diff
changeset
|
6520 Check('TransferSyntaxes/1.2.840.10008.1.2.4.51.dcm', str(0x072c)) |
cc79fa4945da
test_pixel_data_offset
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
374
diff
changeset
|
6521 Check('TransferSyntaxes/1.2.840.10008.1.2.4.57.dcm', str(0x0620)) |
cc79fa4945da
test_pixel_data_offset
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
374
diff
changeset
|
6522 Check('TransferSyntaxes/1.2.840.10008.1.2.4.70.dcm', str(0x065a)) |
cc79fa4945da
test_pixel_data_offset
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
374
diff
changeset
|
6523 Check('TransferSyntaxes/1.2.840.10008.1.2.4.80.dcm', str(0x0b46)) |
cc79fa4945da
test_pixel_data_offset
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
374
diff
changeset
|
6524 Check('TransferSyntaxes/1.2.840.10008.1.2.4.81.dcm', str(0x073e)) |
cc79fa4945da
test_pixel_data_offset
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
374
diff
changeset
|
6525 Check('TransferSyntaxes/1.2.840.10008.1.2.4.90.dcm', str(0x0b66)) |
cc79fa4945da
test_pixel_data_offset
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
374
diff
changeset
|
6526 Check('TransferSyntaxes/1.2.840.10008.1.2.4.91.dcm', str(0x19b8)) |
cc79fa4945da
test_pixel_data_offset
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
374
diff
changeset
|
6527 Check('TransferSyntaxes/1.2.840.10008.1.2.5.dcm', str(0x0b0a)) |
cc79fa4945da
test_pixel_data_offset
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
374
diff
changeset
|
6528 Check('TransferSyntaxes/1.2.840.10008.1.2.dcm', '') # No valid DICOM preamble |
382
a8dd562943a7
added test_peer_store_straight
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
380
diff
changeset
|
6529 |
a8dd562943a7
added test_peer_store_straight
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
380
diff
changeset
|
6530 |
a8dd562943a7
added test_peer_store_straight
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
380
diff
changeset
|
6531 def test_peer_store_straight(self): |
a8dd562943a7
added test_peer_store_straight
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
380
diff
changeset
|
6532 self.assertEqual(0, len(DoGet(_LOCAL, '/exports')['Exports'])) |
a8dd562943a7
added test_peer_store_straight
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
380
diff
changeset
|
6533 self.assertEqual(0, len(DoGet(_REMOTE, '/exports')['Exports'])) |
a8dd562943a7
added test_peer_store_straight
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
380
diff
changeset
|
6534 |
a8dd562943a7
added test_peer_store_straight
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
380
diff
changeset
|
6535 peer = DoGet(_REMOTE, '/peers/peer/system') |
a8dd562943a7
added test_peer_store_straight
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
380
diff
changeset
|
6536 self.assertEqual(3, len(peer)) |
a8dd562943a7
added test_peer_store_straight
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
380
diff
changeset
|
6537 self.assertEqual(5, peer['DatabaseVersion']) |
a8dd562943a7
added test_peer_store_straight
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
380
diff
changeset
|
6538 self.assertEqual('MyOrthanc', peer['Name']) |
a8dd562943a7
added test_peer_store_straight
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
380
diff
changeset
|
6539 self.assertEqual('0.8.6', peer['Version']) |
a8dd562943a7
added test_peer_store_straight
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
380
diff
changeset
|
6540 |
a8dd562943a7
added test_peer_store_straight
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
380
diff
changeset
|
6541 with open(GetDatabasePath('DummyCT.dcm'), 'rb') as f: |
a8dd562943a7
added test_peer_store_straight
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
380
diff
changeset
|
6542 j = DoPost(_REMOTE, '/peers/peer/store-straight', f.read(), 'application/dicom') |
a8dd562943a7
added test_peer_store_straight
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
380
diff
changeset
|
6543 |
a8dd562943a7
added test_peer_store_straight
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
380
diff
changeset
|
6544 # Remote server is Orthanc 0.8.6, thus "ParentPatient", |
a8dd562943a7
added test_peer_store_straight
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
380
diff
changeset
|
6545 # "ParentStudy", "ParentSeries" are not reported |
a8dd562943a7
added test_peer_store_straight
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
380
diff
changeset
|
6546 self.assertEqual(3, len(j)) |
a8dd562943a7
added test_peer_store_straight
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
380
diff
changeset
|
6547 self.assertEqual('66a662ce-7430e543-bad44d47-0dc5a943-ec7a538d', j['ID']) |
a8dd562943a7
added test_peer_store_straight
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
380
diff
changeset
|
6548 self.assertEqual('/instances/66a662ce-7430e543-bad44d47-0dc5a943-ec7a538d', j['Path']) |
a8dd562943a7
added test_peer_store_straight
Sebastien Jodogne <s.jodogne@gmail.com>
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380
diff
changeset
|
6549 self.assertEqual('Success', j['Status']) |
a8dd562943a7
added test_peer_store_straight
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
380
diff
changeset
|
6550 |
a8dd562943a7
added test_peer_store_straight
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
380
diff
changeset
|
6551 self.assertEqual(1, len(DoGet(_LOCAL, '/patients'))) |
a8dd562943a7
added test_peer_store_straight
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
changeset
|
6552 self.assertEqual(0, len(DoGet(_REMOTE, '/patients'))) |
383 | 6553 |
6554 | |
6555 def test_cp246(self): | |
6556 # This fails on Orthanc <= 1.9.0 | |
6557 a = UploadInstance(_REMOTE, '2021-02-19-MalaterreCP246.dcm')['ID'] | |
6558 self.assertEqual(1, len(DoGet(_REMOTE, '/instances'))) | |
6559 | |
6560 tags = DoGet(_REMOTE, '/instances/%s/tags?short' % a) | |
6561 self.assertEqual('1.2.840.10008.5.1.4.1.1.128', tags['0008,0016']) | |
6562 self.assertEqual('1.3.12.2.1107.5.1.4.36085.2.0.517715415141633', tags['0008,0018']) | |
6563 self.assertEqual('1.2.840.113745.101000.1008000.38179.6792.6324567', tags['0020,000d']) | |
6564 self.assertEqual('1.3.12.2.1107.5.1.4.36085.2.0.517714246252254', tags['0020,000e']) | |
6565 | |
6566 study = DoGet(_REMOTE, '/instances/%s/study' % a) | |
6567 self.assertEqual(tags['0020,000d'], study['MainDicomTags']['StudyInstanceUID']) | |
6568 | |
6569 series = DoGet(_REMOTE, '/instances/%s/series' % a) | |
6570 self.assertEqual(tags['0020,000e'], series['MainDicomTags']['SeriesInstanceUID']) | |
6571 | |
6572 instance = DoGet(_REMOTE, '/instances/%s' % a) | |
6573 self.assertEqual(tags['0008,0018'], instance['MainDicomTags']['SOPInstanceUID']) | |
6574 | |
391
227d9a932467
testing revisions in metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
390
diff
changeset
|
6575 |
227d9a932467
testing revisions in metadata
Sebastien Jodogne <s.jodogne@gmail.com>
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diff
changeset
|
6576 def test_revisions(self): |
227d9a932467
testing revisions in metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
changeset
|
6577 # This test fails on Orthanc <= 1.9.1 (support for revisions |
227d9a932467
testing revisions in metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
390
diff
changeset
|
6578 # was introduced in 1.9.2), or if configuration option |
227d9a932467
testing revisions in metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
390
diff
changeset
|
6579 # "CheckRevisions" is "False". Conventions for HTTP headers |
227d9a932467
testing revisions in metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
changeset
|
6580 # related to revisions mimic CouchDB: |
227d9a932467
testing revisions in metadata
Sebastien Jodogne <s.jodogne@gmail.com>
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diff
changeset
|
6581 # https://docs.couchdb.org/en/stable/api/document/common.html |
227d9a932467
testing revisions in metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
390
diff
changeset
|
6582 i = UploadInstance(_REMOTE, 'DummyCT.dcm') ['ID'] |
227d9a932467
testing revisions in metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
390
diff
changeset
|
6583 |
227d9a932467
testing revisions in metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
390
diff
changeset
|
6584 (headers, body) = DoGetRaw(_REMOTE, '/instances/%s/metadata/TransferSyntax' % i) |
227d9a932467
testing revisions in metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
390
diff
changeset
|
6585 self.assertEqual('200', headers['status']) |
227d9a932467
testing revisions in metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
390
diff
changeset
|
6586 self.assertEqual('"0"', headers['etag']) |
227d9a932467
testing revisions in metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
390
diff
changeset
|
6587 self.assertEqual('1.2.840.10008.1.2.4.70', body) |
227d9a932467
testing revisions in metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
390
diff
changeset
|
6588 |
227d9a932467
testing revisions in metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
390
diff
changeset
|
6589 (headers, body) = DoGetRaw(_REMOTE, '/instances/%s/metadata/TransferSyntax' % i, headers = { |
227d9a932467
testing revisions in metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
390
diff
changeset
|
6590 'If-None-Match' : '"0"' |
227d9a932467
testing revisions in metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
390
diff
changeset
|
6591 }) |
227d9a932467
testing revisions in metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
390
diff
changeset
|
6592 self.assertEqual('304', headers['status']) # Not modified |
227d9a932467
testing revisions in metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
390
diff
changeset
|
6593 self.assertEqual('"0"', headers['etag']) |
227d9a932467
testing revisions in metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
390
diff
changeset
|
6594 self.assertEqual('', body) # Body must be empty on 304 status |
227d9a932467
testing revisions in metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
390
diff
changeset
|
6595 |
227d9a932467
testing revisions in metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
390
diff
changeset
|
6596 (headers, body) = DoGetRaw(_REMOTE, '/instances/%s/metadata/TransferSyntax' % i, headers = { |
227d9a932467
testing revisions in metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
390
diff
changeset
|
6597 'If-None-Match' : '"1"' |
227d9a932467
testing revisions in metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
390
diff
changeset
|
6598 }) |
227d9a932467
testing revisions in metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
390
diff
changeset
|
6599 self.assertEqual('200', headers['status']) |
227d9a932467
testing revisions in metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
390
diff
changeset
|
6600 self.assertEqual('"0"', headers['etag']) |
227d9a932467
testing revisions in metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
390
diff
changeset
|
6601 self.assertEqual('1.2.840.10008.1.2.4.70', body) |
227d9a932467
testing revisions in metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
390
diff
changeset
|
6602 |
227d9a932467
testing revisions in metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
390
diff
changeset
|
6603 (headers, body) = DoDeleteRaw(_REMOTE, '/instances/%s/metadata/TransferSyntax' % i) |
227d9a932467
testing revisions in metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
390
diff
changeset
|
6604 self.assertEqual('403', headers['status']) # Forbidden (system metadata) |
227d9a932467
testing revisions in metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
390
diff
changeset
|
6605 |
227d9a932467
testing revisions in metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
390
diff
changeset
|
6606 (headers, body) = DoPutRaw(_REMOTE, '/instances/%s/metadata/TransferSyntax' % i, 'hello') |
227d9a932467
testing revisions in metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
390
diff
changeset
|
6607 self.assertEqual('403', headers['status']) # Forbidden (system metadata) |
227d9a932467
testing revisions in metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
390
diff
changeset
|
6608 |
227d9a932467
testing revisions in metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
390
diff
changeset
|
6609 (headers, body) = DoPutRaw(_REMOTE, '/instances/%s/metadata/1024' % i, 'hello') |
227d9a932467
testing revisions in metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
390
diff
changeset
|
6610 self.assertEqual('200', headers['status']) |
227d9a932467
testing revisions in metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
390
diff
changeset
|
6611 self.assertEqual('"0"', headers['etag']) |
227d9a932467
testing revisions in metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
390
diff
changeset
|
6612 |
227d9a932467
testing revisions in metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
390
diff
changeset
|
6613 (headers, body) = DoGetRaw(_REMOTE, '/instances/%s/metadata/1024' % i) |
227d9a932467
testing revisions in metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
390
diff
changeset
|
6614 self.assertEqual('200', headers['status']) |
227d9a932467
testing revisions in metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
390
diff
changeset
|
6615 self.assertEqual('"0"', headers['etag']) |
227d9a932467
testing revisions in metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
390
diff
changeset
|
6616 self.assertEqual('hello', body) |
227d9a932467
testing revisions in metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
390
diff
changeset
|
6617 |
227d9a932467
testing revisions in metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
390
diff
changeset
|
6618 (headers, body) = DoGetRaw(_REMOTE, '/instances/%s/metadata/1024' % i, headers = { |
227d9a932467
testing revisions in metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
390
diff
changeset
|
6619 'If-None-Match' : '"0"' |
227d9a932467
testing revisions in metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
390
diff
changeset
|
6620 }) |
227d9a932467
testing revisions in metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
390
diff
changeset
|
6621 self.assertEqual('304', headers['status']) |
227d9a932467
testing revisions in metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
390
diff
changeset
|
6622 self.assertEqual('"0"', headers['etag']) |
227d9a932467
testing revisions in metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
390
diff
changeset
|
6623 self.assertEqual('', body) |
227d9a932467
testing revisions in metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
390
diff
changeset
|
6624 |
227d9a932467
testing revisions in metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
390
diff
changeset
|
6625 (headers, body) = DoGetRaw(_REMOTE, '/instances/%s/metadata/1024' % i, headers = { |
227d9a932467
testing revisions in metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
390
diff
changeset
|
6626 'If-None-Match' : '"1"' |
227d9a932467
testing revisions in metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
390
diff
changeset
|
6627 }) |
227d9a932467
testing revisions in metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
390
diff
changeset
|
6628 self.assertEqual('200', headers['status']) |
227d9a932467
testing revisions in metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
390
diff
changeset
|
6629 self.assertEqual('"0"', headers['etag']) |
227d9a932467
testing revisions in metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
390
diff
changeset
|
6630 self.assertEqual('hello', body) |
227d9a932467
testing revisions in metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
390
diff
changeset
|
6631 self.assertEqual('hello', DoGet(_REMOTE, '/instances/%s/metadata/1024' % i)) |
227d9a932467
testing revisions in metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
390
diff
changeset
|
6632 |
227d9a932467
testing revisions in metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
390
diff
changeset
|
6633 (headers, body) = DoDeleteRaw(_REMOTE, '/instances/%s/metadata/1024' % i) |
227d9a932467
testing revisions in metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
390
diff
changeset
|
6634 self.assertEqual('409', headers['status']) # No revision given, but "CheckRevisions" is True |
227d9a932467
testing revisions in metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
390
diff
changeset
|
6635 |
227d9a932467
testing revisions in metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
390
diff
changeset
|
6636 (headers, body) = DoDeleteRaw(_REMOTE, '/instances/%s/metadata/1024' % i, headers = { |
227d9a932467
testing revisions in metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
390
diff
changeset
|
6637 'If-Match' : '45' |
227d9a932467
testing revisions in metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
390
diff
changeset
|
6638 }) |
227d9a932467
testing revisions in metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
390
diff
changeset
|
6639 self.assertEqual('409', headers['status']) # Conflict, as bad revision |
227d9a932467
testing revisions in metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
390
diff
changeset
|
6640 |
227d9a932467
testing revisions in metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
390
diff
changeset
|
6641 (headers, body) = DoDeleteRaw(_REMOTE, '/instances/%s/metadata/1024' % i, headers = { |
227d9a932467
testing revisions in metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
390
diff
changeset
|
6642 'If-Match' : '0' |
227d9a932467
testing revisions in metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
390
diff
changeset
|
6643 }) |
227d9a932467
testing revisions in metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
390
diff
changeset
|
6644 self.assertEqual('200', headers['status']) |
227d9a932467
testing revisions in metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
390
diff
changeset
|
6645 |
227d9a932467
testing revisions in metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
390
diff
changeset
|
6646 (headers, body) = DoDeleteRaw(_REMOTE, '/instances/%s/metadata/1024' % i, headers = { |
227d9a932467
testing revisions in metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
390
diff
changeset
|
6647 'If-Match' : '0' |
227d9a932467
testing revisions in metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
390
diff
changeset
|
6648 }) |
227d9a932467
testing revisions in metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
390
diff
changeset
|
6649 self.assertEqual('404', headers['status']) |
227d9a932467
testing revisions in metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
390
diff
changeset
|
6650 |
227d9a932467
testing revisions in metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
390
diff
changeset
|
6651 (headers, body) = DoGetRaw(_REMOTE, '/instances/%s/metadata/1024' % i) |
227d9a932467
testing revisions in metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
390
diff
changeset
|
6652 self.assertEqual('404', headers['status']) |
227d9a932467
testing revisions in metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
390
diff
changeset
|
6653 |
227d9a932467
testing revisions in metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
390
diff
changeset
|
6654 self.assertRaises(Exception, lambda: DoGet(_REMOTE, '/instances/%s/metadata/1024' % i)) |
227d9a932467
testing revisions in metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
390
diff
changeset
|
6655 |
227d9a932467
testing revisions in metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
390
diff
changeset
|
6656 (headers, body) = DoPutRaw(_REMOTE, '/instances/%s/metadata/1024' % i, 'hello') |
227d9a932467
testing revisions in metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
390
diff
changeset
|
6657 self.assertEqual('200', headers['status']) |
227d9a932467
testing revisions in metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
390
diff
changeset
|
6658 self.assertEqual('"0"', headers['etag']) |
227d9a932467
testing revisions in metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
390
diff
changeset
|
6659 |
227d9a932467
testing revisions in metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
390
diff
changeset
|
6660 (headers, body) = DoPutRaw(_REMOTE, '/instances/%s/metadata/1024' % i, 'hello') |
227d9a932467
testing revisions in metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
390
diff
changeset
|
6661 self.assertEqual('409', headers['status']) |
227d9a932467
testing revisions in metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
390
diff
changeset
|
6662 |
227d9a932467
testing revisions in metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
390
diff
changeset
|
6663 (headers, body) = DoGetRaw(_REMOTE, '/instances/%s/metadata/TransferSyntax' % i, headers = { |
227d9a932467
testing revisions in metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
390
diff
changeset
|
6664 'If-None-Match' : '"0"' |
227d9a932467
testing revisions in metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
390
diff
changeset
|
6665 }) |
227d9a932467
testing revisions in metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
390
diff
changeset
|
6666 self.assertEqual('304', headers['status']) # Not modified |
227d9a932467
testing revisions in metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
390
diff
changeset
|
6667 self.assertEqual('"0"', headers['etag']) |
227d9a932467
testing revisions in metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
390
diff
changeset
|
6668 self.assertEqual('', body) # Body must be empty on 304 status |
227d9a932467
testing revisions in metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
390
diff
changeset
|
6669 |
227d9a932467
testing revisions in metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
390
diff
changeset
|
6670 (headers, body) = DoPutRaw(_REMOTE, '/instances/%s/metadata/1024' % i, 'hello', headers = { |
227d9a932467
testing revisions in metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
390
diff
changeset
|
6671 'If-Match' : '0' |
227d9a932467
testing revisions in metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
390
diff
changeset
|
6672 }) |
227d9a932467
testing revisions in metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
390
diff
changeset
|
6673 self.assertEqual('200', headers['status']) |
227d9a932467
testing revisions in metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
390
diff
changeset
|
6674 self.assertEqual('"1"', headers['etag']) |
227d9a932467
testing revisions in metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
390
diff
changeset
|
6675 self.assertEqual('', body) |
227d9a932467
testing revisions in metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
390
diff
changeset
|
6676 |
227d9a932467
testing revisions in metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
390
diff
changeset
|
6677 (headers, body) = DoGetRaw(_REMOTE, '/instances/%s/metadata/1024' % i, headers = { |
227d9a932467
testing revisions in metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
390
diff
changeset
|
6678 'If-None-Match' : headers['etag'] |
227d9a932467
testing revisions in metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
390
diff
changeset
|
6679 }) |
227d9a932467
testing revisions in metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
390
diff
changeset
|
6680 |
227d9a932467
testing revisions in metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
390
diff
changeset
|
6681 if headers['status'] == '200': |
227d9a932467
testing revisions in metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
390
diff
changeset
|
6682 print("Your database backend doesn't store revisions") |
227d9a932467
testing revisions in metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
390
diff
changeset
|
6683 (headers, body) = DoPutRaw(_REMOTE, '/instances/%s/metadata/1024' % i, 'hello2', headers = { |
227d9a932467
testing revisions in metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
390
diff
changeset
|
6684 'If-Match' : '1' |
227d9a932467
testing revisions in metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
390
diff
changeset
|
6685 }) |
227d9a932467
testing revisions in metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
390
diff
changeset
|
6686 self.assertEqual('409', headers['status']) |
227d9a932467
testing revisions in metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
390
diff
changeset
|
6687 |
227d9a932467
testing revisions in metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
390
diff
changeset
|
6688 (headers, body) = DoPutRaw(_REMOTE, '/instances/%s/metadata/1024' % i, 'hello2', headers = { |
227d9a932467
testing revisions in metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
390
diff
changeset
|
6689 'If-Match' : '0' |
227d9a932467
testing revisions in metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
390
diff
changeset
|
6690 }) |
227d9a932467
testing revisions in metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
390
diff
changeset
|
6691 self.assertEqual('200', headers['status']) |
227d9a932467
testing revisions in metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
390
diff
changeset
|
6692 self.assertEqual('"1"', headers['etag']) |
227d9a932467
testing revisions in metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
390
diff
changeset
|
6693 self.assertEqual('', body) |
227d9a932467
testing revisions in metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
390
diff
changeset
|
6694 |
227d9a932467
testing revisions in metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
390
diff
changeset
|
6695 elif headers['status'] == '304': # Revisions are supported |
227d9a932467
testing revisions in metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
390
diff
changeset
|
6696 (headers, body) = DoPutRaw(_REMOTE, '/instances/%s/metadata/1024' % i, 'hello2', headers = { |
227d9a932467
testing revisions in metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
390
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6697 'If-Match' : '0' |
227d9a932467
testing revisions in metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
390
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6698 }) |
227d9a932467
testing revisions in metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
390
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6699 self.assertEqual('409', headers['status']) |
227d9a932467
testing revisions in metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
390
diff
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6700 |
227d9a932467
testing revisions in metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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6701 (headers, body) = DoPutRaw(_REMOTE, '/instances/%s/metadata/1024' % i, 'hello2', headers = { |
227d9a932467
testing revisions in metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
390
diff
changeset
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6702 'If-Match' : '1' |
227d9a932467
testing revisions in metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
390
diff
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6703 }) |
227d9a932467
testing revisions in metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
390
diff
changeset
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6704 self.assertEqual('200', headers['status']) |
227d9a932467
testing revisions in metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
390
diff
changeset
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6705 self.assertEqual('"2"', headers['etag']) |
227d9a932467
testing revisions in metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
390
diff
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6706 self.assertEqual('', body) |
227d9a932467
testing revisions in metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
390
diff
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6707 |
227d9a932467
testing revisions in metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
390
diff
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6708 else: |
227d9a932467
testing revisions in metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
390
diff
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6709 raise Exception('Internal error') |
227d9a932467
testing revisions in metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
390
diff
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6710 |
227d9a932467
testing revisions in metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
390
diff
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6711 self.assertEqual('hello2', DoGet(_REMOTE, '/instances/%s/metadata/1024' % i)) |
227d9a932467
testing revisions in metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
390
diff
changeset
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6712 |