Mercurial > hg > orthanc-tests
annotate Tests/Tests.py @ 11:c660a64ce2dd
cont
| author | Sebastien Jodogne <s.jodogne@gmail.com> |
|---|---|
| date | Thu, 18 Jun 2015 14:18:49 +0200 |
| parents | 5f73008bb873 |
| children | 15c166240dfb |
| rev | line source |
|---|---|
| 3 | 1 # Orthanc - A Lightweight, RESTful DICOM Store |
| 2 # Copyright (C) 2012-2015 Sebastien Jodogne, Medical Physics | |
| 3 # Department, University Hospital of Liege, Belgium | |
| 4 # | |
| 5 # This program is free software: you can redistribute it and/or | |
| 6 # modify it under the terms of the GNU General Public License as | |
| 7 # published by the Free Software Foundation, either version 3 of the | |
| 8 # License, or (at your option) any later version. | |
| 9 # | |
| 10 # This program is distributed in the hope that it will be useful, but | |
| 11 # WITHOUT ANY WARRANTY; without even the implied warranty of | |
| 12 # MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU | |
| 13 # General Public License for more details. | |
| 14 # | |
| 15 # You should have received a copy of the GNU General Public License | |
| 16 # along with this program. If not, see <http://www.gnu.org/licenses/>. | |
| 17 | |
| 18 | |
| 19 import unittest | |
| 20 | |
| 11 | 21 from PIL import ImageChops |
| 3 | 22 from Toolbox import * |
| 23 | |
| 24 _LOCAL = None | |
| 25 _REMOTE = None | |
| 26 | |
| 27 | |
| 28 def SetOrthancParameters(local, remote): | |
| 29 global _LOCAL, _REMOTE | |
| 30 _LOCAL = local | |
| 31 _REMOTE = remote | |
| 32 | |
| 33 | |
| 34 class Orthanc(unittest.TestCase): | |
| 35 def setUp(self): | |
| 36 DropOrthanc(_LOCAL) | |
| 37 DropOrthanc(_REMOTE) | |
| 38 | |
| 39 def test_system(self): | |
| 40 self.assertTrue('Version' in DoGet(_REMOTE, '/system')) | |
| 41 self.assertEqual('0', DoGet(_REMOTE, '/statistics')['TotalDiskSize']) | |
| 42 self.assertEqual('0', DoGet(_REMOTE, '/statistics')['TotalUncompressedSize']) | |
| 43 | |
| 44 def test_upload(self): | |
| 45 u = UploadInstance(_REMOTE, 'DummyCT.dcm') | |
| 46 self.assertEqual('Success', u['Status']) | |
| 47 u = UploadInstance(_REMOTE, 'DummyCT.dcm') | |
| 48 self.assertEqual('AlreadyStored', u['Status']) | |
| 49 self.assertEqual(1, len(DoGet(_REMOTE, '/patients'))) | |
| 50 self.assertEqual(1, len(DoGet(_REMOTE, '/studies'))) | |
| 51 self.assertEqual(1, len(DoGet(_REMOTE, '/series'))) | |
| 52 self.assertEqual(1, len(DoGet(_REMOTE, '/instances'))) | |
| 53 | |
| 54 i = DoGet(_REMOTE, '/instances/%s/simplified-tags' % u['ID']) | |
| 55 self.assertEqual('20070101', i['StudyDate']) | |
| 56 | |
| 57 | |
| 5 | 58 def test_upload_2(self): |
| 3 | 59 i = UploadInstance(_REMOTE, 'DummyCT.dcm')['ID'] |
| 60 instance = DoGet(_REMOTE, '/instances/%s' % i) | |
| 61 self.assertEqual(i, instance['ID']) | |
| 62 self.assertEqual('1.2.840.113619.2.176.2025.1499492.7040.1171286242.109', | |
| 63 instance['MainDicomTags']['SOPInstanceUID']) | |
| 64 | |
| 65 series = DoGet(_REMOTE, '/series/%s' % instance['ParentSeries']) | |
| 66 self.assertEqual('1.2.840.113619.2.176.2025.1499492.7391.1171285944.394', | |
| 67 series['MainDicomTags']['SeriesInstanceUID']) | |
| 68 | |
| 69 study = DoGet(_REMOTE, '/studies/%s' % series['ParentStudy']) | |
| 70 self.assertEqual('1.2.840.113619.2.176.2025.1499492.7391.1171285944.390', | |
| 71 study['MainDicomTags']['StudyInstanceUID']) | |
| 72 | |
| 73 patient = DoGet(_REMOTE, '/patients/%s' % study['ParentPatient']) | |
| 74 self.assertEqual('ozp00SjY2xG', | |
| 75 patient['MainDicomTags']['PatientID']) | |
| 76 | |
| 77 dicom = DoGet(_REMOTE, '/instances/%s/file' % instance['ID']) | |
| 78 self.assertEqual(2472, len(dicom)) | |
| 79 self.assertEqual('3e29b869978b6db4886355a2b1132124', ComputeMD5(dicom)) | |
| 80 self.assertEqual(1, len(DoGet(_REMOTE, '/instances/%s/frames' % i))) | |
| 81 self.assertEqual('TWINOW', DoGet(_REMOTE, '/instances/%s/simplified-tags' % i)['StationName']) | |
| 82 self.assertEqual('TWINOW', DoGet(_REMOTE, '/instances/%s/tags' % i)['0008,1010']['Value']) | |
| 83 | |
| 84 | |
| 5 | 85 def test_images(self): |
| 86 i = UploadInstance(_REMOTE, 'Phenix/IM-0001-0001.dcm')['ID'] | |
| 87 self.assertEqual(1, len(DoGet(_REMOTE, '/instances/%s/frames' % i))) | |
| 3 | 88 |
| 5 | 89 im = GetImage(_REMOTE, '/instances/%s/preview' % i) |
| 90 self.assertEqual("L", im.mode) | |
| 91 self.assertEqual(512, im.size[0]) | |
| 92 self.assertEqual(358, im.size[1]) | |
| 93 | |
| 94 im = GetImage(_REMOTE, '/instances/%s/image-uint8' % i) | |
| 95 self.assertEqual("L", im.mode) | |
| 96 self.assertEqual(512, im.size[0]) | |
| 97 self.assertEqual(358, im.size[1]) | |
| 98 | |
| 99 im = GetImage(_REMOTE, '/instances/%s/image-uint16' % i) | |
| 100 self.assertEqual(512, im.size[0]) | |
| 101 self.assertEqual(358, im.size[1]) | |
| 102 | |
| 103 im = GetImage(_REMOTE, '/instances/%s/frames/0/preview' % i) | |
| 104 self.assertEqual("L", im.mode) | |
| 105 self.assertEqual(512, im.size[0]) | |
| 106 self.assertEqual(358, im.size[1]) | |
| 107 | |
| 108 im = GetImage(_REMOTE, '/instances/%s/frames/0/image-uint8' % i) | |
| 109 self.assertEqual("L", im.mode) | |
| 110 self.assertEqual(512, im.size[0]) | |
| 111 self.assertEqual(358, im.size[1]) | |
| 112 | |
| 113 im = GetImage(_REMOTE, '/instances/%s/frames/0/image-uint16' % i) | |
| 114 self.assertEqual(512, im.size[0]) | |
| 115 self.assertEqual(358, im.size[1]) | |
| 116 | |
| 6 | 117 |
| 118 def test_hierarchy(self): | |
| 119 UploadFolder(_REMOTE, 'Brainix/Epi') | |
| 120 UploadFolder(_REMOTE, 'Brainix/Flair') | |
| 121 UploadFolder(_REMOTE, 'Knee/T1') | |
| 122 UploadFolder(_REMOTE, 'Knee/T2') | |
| 123 | |
| 124 p = DoGet(_REMOTE, '/patients') | |
| 125 s = DoGet(_REMOTE, '/studies') | |
| 126 t = DoGet(_REMOTE, '/series') | |
| 127 self.assertEqual(2, len(p)) | |
| 128 self.assertEqual(2, len(s)) | |
| 129 self.assertEqual(4, len(t)) | |
| 130 self.assertEqual(94, len(DoGet(_REMOTE, '/instances'))) | |
| 131 | |
| 132 brainixPatient = '16738bc3-e47ed42a-43ce044c-a3414a45-cb069bd0' | |
| 133 brainixStudy = '27f7126f-4f66fb14-03f4081b-f9341db2-53925988' | |
| 134 brainixEpi = '2ac1316d-3e432022-62eabff2-c59f5475-9b1ac3f8' | |
| 135 brainixFlair = '1e2c125c-411b8e86-3f4fe68e-a7584dd3-c6da78f0' | |
| 136 | |
| 137 kneePatient = 'ca29faea-b6a0e17f-067743a1-8b778011-a48b2a17' | |
| 138 kneeStudy = '0a9b3153-2512774b-2d9580de-1fc3dcf6-3bd83918' | |
| 139 kneeT1 = '6de73705-c4e65c1b-9d9ea1b5-cabcd8e7-f15e4285' | |
| 140 kneeT2 = 'bbf7a453-0d34251a-03663b55-46bb31b9-ffd74c59' | |
| 141 | |
| 142 self.assertTrue(brainixPatient in p) | |
| 143 self.assertTrue(kneePatient in p) | |
| 144 self.assertTrue(brainixStudy in s) | |
| 145 self.assertTrue(kneeStudy in s) | |
| 146 self.assertTrue(brainixEpi in t) | |
| 147 self.assertTrue(brainixFlair in t) | |
| 148 self.assertTrue(kneeT1 in t) | |
| 149 self.assertTrue(kneeT2 in t) | |
| 150 | |
| 151 self.assertEqual(44, len(DoGet(_REMOTE, '/patients/%s/instances' % brainixPatient))) | |
| 152 self.assertEqual(2, len(DoGet(_REMOTE, '/patients/%s/series' % brainixPatient))) | |
| 153 self.assertEqual(1, len(DoGet(_REMOTE, '/patients/%s/studies' % brainixPatient))) | |
| 154 | |
| 155 self.assertEqual(50, len(DoGet(_REMOTE, '/patients/%s/instances' % kneePatient))) | |
| 156 self.assertEqual(2, len(DoGet(_REMOTE, '/patients/%s/series' % kneePatient))) | |
| 157 self.assertEqual(1, len(DoGet(_REMOTE, '/patients/%s/studies' % kneePatient))) | |
| 158 | |
| 159 self.assertEqual(2, len(DoGet(_REMOTE, '/studies/%s/series' % brainixStudy))) | |
| 160 self.assertEqual(44, len(DoGet(_REMOTE, '/studies/%s/instances' % brainixStudy))) | |
| 161 | |
| 162 self.assertEqual(2, len(DoGet(_REMOTE, '/studies/%s/series' % kneeStudy))) | |
| 163 self.assertEqual(50, len(DoGet(_REMOTE, '/studies/%s/instances' % kneeStudy))) | |
| 164 | |
| 165 self.assertEqual(22, len(DoGet(_REMOTE, '/series/%s/instances' % brainixEpi))) | |
| 166 self.assertEqual(22, len(DoGet(_REMOTE, '/series/%s/instances' % brainixFlair))) | |
| 167 self.assertEqual(24, len(DoGet(_REMOTE, '/series/%s/instances' % kneeT1))) | |
| 168 self.assertEqual(26, len(DoGet(_REMOTE, '/series/%s/instances' % kneeT2))) | |
| 169 | |
| 170 for patient in p: | |
| 171 for study in DoGet(_REMOTE, '/patients/%s/studies' % patient): | |
| 172 self.assertEqual(patient, study['ParentPatient']) | |
| 173 for series in DoGet(_REMOTE, '/studies/%s/series' % study['ID']): | |
| 174 self.assertEqual(study['ID'], series['ParentStudy']) | |
| 175 for instance in DoGet(_REMOTE, '/series/%s/instances' % series['ID']): | |
| 176 self.assertEqual(series['ID'], instance['ParentSeries']) | |
| 177 | |
| 178 self.assertEqual(json.dumps(DoGet(_REMOTE, '/instances/%s/attachments/dicom-as-json/data' % instance['ID'])), | |
| 179 json.dumps(DoGet(_REMOTE, '/instances/%s/tags' % instance['ID']))) | |
| 180 | |
| 181 | |
| 182 r = DoDelete(_REMOTE, "/studies/%s" % brainixStudy)['RemainingAncestor'] | |
| 183 self.assertEqual(1, len(DoGet(_REMOTE, '/patients'))) | |
| 184 self.assertEqual(1, len(DoGet(_REMOTE, '/studies'))) | |
| 185 self.assertEqual(2, len(DoGet(_REMOTE, '/series'))) | |
| 186 self.assertEqual(50, len(DoGet(_REMOTE, '/instances'))) | |
| 187 self.assertEqual(None, r) | |
| 188 | |
| 189 r = DoDelete(_REMOTE, "/series/%s" % kneeT2)['RemainingAncestor'] | |
| 190 self.assertEqual(1, len(DoGet(_REMOTE, '/patients'))) | |
| 191 self.assertEqual(1, len(DoGet(_REMOTE, '/studies'))) | |
| 192 self.assertEqual(1, len(DoGet(_REMOTE, '/series'))) | |
| 193 self.assertEqual(24, len(DoGet(_REMOTE, '/instances'))) | |
| 194 self.assertEqual('Study', r['Type']) | |
| 195 self.assertEqual(kneeStudy, r['ID']) | |
| 196 | |
| 197 r = DoDelete(_REMOTE, "/instances/%s" % DoGet(_REMOTE, '/instances')[0])['RemainingAncestor'] | |
| 198 self.assertEqual(1, len(DoGet(_REMOTE, '/patients'))) | |
| 199 self.assertEqual(1, len(DoGet(_REMOTE, '/studies'))) | |
| 200 self.assertEqual(1, len(DoGet(_REMOTE, '/series'))) | |
| 201 self.assertEqual(23, len(DoGet(_REMOTE, '/instances'))) | |
| 202 self.assertEqual('Series', r['Type']) | |
| 203 self.assertEqual(kneeT1, r['ID']) | |
| 204 | |
| 205 r = DoDelete(_REMOTE, "/patients/%s" % kneePatient)['RemainingAncestor'] | |
| 206 self.assertEqual(0, len(DoGet(_REMOTE, '/patients'))) | |
| 207 self.assertEqual(0, len(DoGet(_REMOTE, '/studies'))) | |
| 208 self.assertEqual(0, len(DoGet(_REMOTE, '/series'))) | |
| 209 self.assertEqual(0, len(DoGet(_REMOTE, '/instances'))) | |
| 210 self.assertEqual(None, r) | |
| 211 | |
| 212 DropOrthanc(_REMOTE) | |
| 213 self.assertEqual('0', DoGet(_REMOTE, '/statistics')['TotalDiskSize']) | |
| 214 self.assertEqual('0', DoGet(_REMOTE, '/statistics')['TotalUncompressedSize']) | |
| 7 | 215 |
| 216 | |
| 217 def test_multi_frame(self): | |
| 218 i = UploadInstance(_REMOTE, 'Multiframe.dcm')['ID'] | |
| 219 self.assertEqual(76, len(DoGet(_REMOTE, '/instances/%s/frames' % i))) | |
| 220 | |
| 221 im = GetImage(_REMOTE, '/instances/%s/frames/0/preview' % i) | |
| 222 self.assertEqual("L", im.mode) | |
| 223 self.assertEqual(512, im.size[0]) | |
| 224 self.assertEqual(512, im.size[1]) | |
| 225 | |
| 226 DoGet(_REMOTE, '/instances/%s/frames/0/image-uint8' % i) | |
| 227 DoGet(_REMOTE, '/instances/%s/frames/0/image-uint16' % i) | |
| 228 DoGet(_REMOTE, '/instances/%s/frames/75/preview' % i) | |
| 229 self.assertRaises(Exception, lambda: DoGet(_REMOTE, '/instances/%s/frames/aaa/preview' % i)) | |
| 230 self.assertRaises(Exception, lambda: DoGet(_REMOTE, '/instances/%s/frames/76/preview' % i)) | |
| 231 | |
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232 |
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233 def test_changes(self): |
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234 # Check emptiness |
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235 c = DoGet(_REMOTE, '/changes') |
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236 self.assertEqual(0, len(c['Changes'])) |
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237 self.assertEqual(0, c['Last']) |
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238 self.assertTrue(c['Done']) |
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239 c = DoGet(_REMOTE, '/changes?last') |
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240 self.assertEqual(0, len(c['Changes'])) |
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241 self.assertEqual(0, c['Last']) |
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242 self.assertTrue(c['Done']) |
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243 |
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244 # Add 1 instance |
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245 i = UploadInstance(_REMOTE, 'Brainix/Flair/IM-0001-0001.dcm')['ID'] |
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246 c = DoGet(_REMOTE, '/changes') |
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247 begin = c['Last'] |
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248 self.assertEqual(4, len(c['Changes'])) |
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249 self.assertTrue(c['Done']) |
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250 self.assertEqual(c['Changes'][-1]['Seq'], c['Last']) |
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251 |
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252 c = DoGet(_REMOTE, '/changes?last') |
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253 self.assertEqual(1, len(c['Changes'])) |
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254 self.assertEqual(begin, c['Last']) |
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255 self.assertTrue(c['Done']) |
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256 c = DoGet(_REMOTE, '/changes?limit=1&since=' + str(begin - 1)) |
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257 self.assertEqual(1, len(c['Changes'])) |
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258 self.assertEqual(begin, c['Last']) |
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259 self.assertTrue(c['Done']) |
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260 c = DoGet(_REMOTE, '/changes?limit=1&since=' + str(begin - 2)) |
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261 self.assertEqual(1, len(c['Changes'])) |
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262 self.assertEqual(begin - 1, c['Last']) |
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263 self.assertFalse(c['Done']) |
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264 c = DoGet(_REMOTE, '/changes?limit=1&since=' + str(begin - 3)) |
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265 self.assertEqual(1, len(c['Changes'])) |
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266 self.assertEqual(begin - 2, c['Last']) |
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267 self.assertFalse(c['Done']) |
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268 |
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269 UploadFolder(_REMOTE, 'Knee/T1') |
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270 UploadFolder(_REMOTE, 'Knee/T2') |
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271 since = begin |
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272 countPatients = 0 |
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273 countStudies = 0 |
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274 countSeries = 0 |
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275 countInstances = 0 |
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276 completed = 0 |
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277 while True: |
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278 c = DoGet(_REMOTE, '/changes', { 'since' : since, 'limit' : 3 }) |
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279 since = c['Last'] |
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280 for i in c['Changes']: |
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281 if i['ResourceType'] == 'Instance': |
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282 countInstances += 1 |
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283 if i['ResourceType'] == 'Patient': |
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284 countPatients += 1 |
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285 if i['ResourceType'] == 'Study': |
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286 countStudies += 1 |
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287 if i['ResourceType'] == 'Series': |
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288 countSeries += 1 |
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289 if i['ChangeType'] == 'NewInstance': |
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290 countInstances += 1 |
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291 if i['ChangeType'] == 'NewPatient': |
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292 countPatients += 1 |
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293 if i['ChangeType'] == 'NewStudy': |
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294 countStudies += 1 |
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295 if i['ChangeType'] == 'NewSeries': |
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296 countSeries += 1 |
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297 if i['ChangeType'] == 'CompletedSeries': |
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298 completed += 1 |
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299 self.assertTrue('ID' in i) |
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300 self.assertTrue('Path' in i) |
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301 self.assertTrue('Seq' in i) |
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302 if c['Done']: |
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303 break |
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304 |
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305 self.assertEqual(2 * 50, countInstances) |
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306 self.assertEqual(2 * 1, countPatients) |
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307 self.assertEqual(2 * 1, countStudies) |
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308 self.assertEqual(2 * 2, countSeries) |
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309 self.assertEqual(0, completed) |
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310 |
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311 |
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312 def test_archive(self): |
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313 UploadInstance(_REMOTE, 'Knee/T1/IM-0001-0001.dcm') |
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314 UploadInstance(_REMOTE, 'Knee/T2/IM-0001-0001.dcm') |
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315 |
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316 z = GetArchive(_REMOTE, '/patients/%s/archive' % DoGet(_REMOTE, '/patients')[0]) |
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317 self.assertEqual(2, len(z.namelist())) |
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318 |
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319 z = GetArchive(_REMOTE, '/studies/%s/archive' % DoGet(_REMOTE, '/studies')[0]) |
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320 self.assertEqual(2, len(z.namelist())) |
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321 |
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322 z = GetArchive(_REMOTE, '/series/%s/archive' % DoGet(_REMOTE, '/series')[0]) |
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323 self.assertEqual(1, len(z.namelist())) |
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324 |
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325 UploadInstance(_REMOTE, 'Brainix/Flair/IM-0001-0001.dcm') |
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326 |
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327 z = GetArchive(_REMOTE, '/patients/%s/archive' % DoGet(_REMOTE, '/patients')[0]) |
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328 self.assertEqual(2, len(z.namelist())) |
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329 |
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330 |
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331 def test_media_archive(self): |
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332 UploadInstance(_REMOTE, 'Knee/T1/IM-0001-0001.dcm') |
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333 UploadInstance(_REMOTE, 'Knee/T2/IM-0001-0001.dcm') |
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334 |
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335 z = GetArchive(_REMOTE, '/patients/%s/media' % DoGet(_REMOTE, '/patients')[0]) |
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336 self.assertEqual(3, len(z.namelist())) |
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337 self.assertTrue('IMAGES/IM0' in z.namelist()) |
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338 self.assertTrue('IMAGES/IM1' in z.namelist()) |
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339 self.assertTrue('DICOMDIR' in z.namelist()) |
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340 |
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341 try: |
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342 os.remove('/tmp/DICOMDIR') |
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343 except: |
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344 # The file does not exist |
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345 pass |
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346 |
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347 z.extract('DICOMDIR', '/tmp') |
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348 a = subprocess.check_output([ 'dciodvfy', '/tmp/DICOMDIR' ], |
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349 stderr = subprocess.STDOUT).split('\n') |
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350 self.assertEqual(3, len(a)) |
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351 self.assertTrue(a[0].startswith('Warning')) |
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352 self.assertEqual('BasicDirectory', a[1]) |
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353 self.assertEqual('', a[2]) |
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354 |
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355 a = subprocess.check_output([ 'dcentvfy', '/tmp/DICOMDIR' ], |
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356 stderr = subprocess.STDOUT).split('\n') |
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357 self.assertEqual(1, len(a)) |
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358 self.assertEqual('', a[0]) |
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359 |
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360 a = subprocess.check_output([ 'dcm2xml', '/tmp/DICOMDIR' ]) |
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361 self.assertTrue(re.search('1.3.46.670589.11.17521.5.0.3124.2008081908590448738', a) != None) |
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362 self.assertTrue(re.search('1.3.46.670589.11.17521.5.0.3124.2008081909113806560', a) != None) |
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363 |
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364 os.remove('/tmp/DICOMDIR') |
| 10 | 365 |
| 366 | |
| 367 def test_protection(self): | |
| 368 UploadInstance(_REMOTE, 'Knee/T1/IM-0001-0001.dcm') | |
| 369 UploadInstance(_REMOTE, 'Brainix/Flair/IM-0001-0001.dcm') | |
| 370 self.assertEqual(2, len(DoGet(_REMOTE, '/patients'))) | |
| 371 a = DoGet(_REMOTE, '/patients')[0] | |
| 372 b = DoGet(_REMOTE, '/patients')[1] | |
| 373 self.assertEqual(0, DoGet(_REMOTE, '/patients/%s/protected' % a)) | |
| 374 DoPut(_REMOTE, '/patients/%s/protected' % a, '0', 'text/plain') | |
| 375 self.assertEqual(0, DoGet(_REMOTE, '/patients/%s/protected' % a)) | |
| 376 DoPut(_REMOTE, '/patients/%s/protected' % a, '1', 'text/plain') | |
| 377 self.assertEqual(1, DoGet(_REMOTE, '/patients/%s/protected' % a)) | |
| 378 DoPut(_REMOTE, '/patients/%s/protected' % a, '0', 'text/plain') | |
| 379 self.assertEqual(0, DoGet(_REMOTE, '/patients/%s/protected' % a)) | |
| 380 | |
| 381 | |
| 382 def test_private_tags(self): | |
| 383 i = UploadInstance(_REMOTE, 'PrivateTags.dcm')['ID'] | |
| 384 | |
| 385 dicom = DoGet(_REMOTE, '/instances/%s/file' % i) | |
| 386 self.assertEqual('1a7c56cb02d6e742cc9c856a8ac182e3', ComputeMD5(dicom)) | |
| 387 | |
| 388 s = '/instances/%s/content/' % i | |
| 389 | |
| 390 self.assertEqual('LOGIQBOOK', DoGet(_REMOTE, s + '0008-1010').strip()) | |
| 391 self.assertRaises(Exception, lambda: DoGet(_REMOTE, s + '0008-1011')) | |
| 392 | |
| 393 self.assertEqual('Abdomen', DoGet(_REMOTE, s + '7fe1-1001/0/7fe1-1008/0/7fe1-1057').strip()) | |
| 394 self.assertEqual('cla_3c', DoGet(_REMOTE, s + '7fe1-1001/0/7fe1-1008/8/7fe1-1057').strip()) | |
| 395 | |
| 396 | |
| 397 def test_sop_instance_uid(self): | |
| 398 UploadInstance(_REMOTE, 'Brainix/Epi/IM-0001-0001.dcm') | |
| 399 UploadInstance(_REMOTE, 'Brainix/Flair/IM-0001-0001.dcm') | |
| 400 UploadInstance(_REMOTE, 'Knee/T1/IM-0001-0001.dcm') | |
| 401 UploadInstance(_REMOTE, 'Knee/T2/IM-0001-0001.dcm') | |
| 402 | |
| 403 for i in DoGet(_REMOTE, '/instances'): | |
| 404 aid = DoGet(_REMOTE, '/instances/%s' % i)['MainDicomTags']['SOPInstanceUID'] | |
| 405 self.assertEqual(aid, DoGet(_REMOTE, '/instances/%s/content/0008-0018' % i).replace(chr(0), '')) | |
| 406 | |
| 407 | |
| 408 def test_raw_tags_mdn(self): | |
| 409 # Bug reported by Cyril Paulus | |
| 410 i = UploadInstance(_REMOTE, 'PrivateMDNTags.dcm')['ID'] | |
| 411 self.assertAlmostEqual(0.000027, DoGet(_REMOTE, '/instances/%s/content/7053-1000' % i)) | |
| 412 | |
| 413 | |
| 414 def test_modify_instance(self): | |
| 415 i = UploadInstance(_REMOTE, 'PrivateTags.dcm')['ID'] | |
| 416 modified = DoPost(_REMOTE, '/instances/%s/modify' % i, | |
| 417 json.dumps({ | |
| 418 "Replace" : { | |
| 419 "PatientName" : "hello", | |
| 420 #"PatientID" : "world" | |
| 421 }, | |
| 422 "Remove" : [ "StationName" ], | |
| 423 "RemovePrivateTags" : None | |
| 424 }), | |
| 425 'application/json') | |
| 426 j = DoPost(_REMOTE, '/instances', modified, 'application/dicom')['ID'] | |
| 427 | |
| 428 self.assertNotEqual('hello', DoGet(_REMOTE, '/instances/%s/content/0010-0010' % i).strip()) | |
| 429 #self.assertNotEqual('world', DoGet(_REMOTE, '/instances/%s/content/0010-0020' % i).strip()) | |
| 430 self.assertEqual('LOGIQBOOK', DoGet(_REMOTE, '/instances/%s/content/0008-1010' % i).strip()) | |
| 431 DoGet(_REMOTE, '/instances/%s/content/6003-1010' % i) # Some private tag | |
| 432 | |
| 433 self.assertEqual('hello', DoGet(_REMOTE, '/instances/%s/content/0010-0010' % j).strip()) | |
| 434 #self.assertEqual('world', DoGet(_REMOTE, '/instances/%s/content/0010-0020' % j).strip()) | |
| 435 self.assertRaises(Exception, lambda: DoGet(_REMOTE, '/instances/%s/content/0008-1010' % j)) | |
| 436 self.assertRaises(Exception, lambda: DoGet(_REMOTE, '/instances/%s/content/6003-1010' % j)) | |
| 437 | |
| 438 | |
| 439 def test_modify_series(self): | |
| 440 # Upload 4 images from the same series | |
| 441 for i in range(4): | |
| 442 UploadInstance(_REMOTE, 'Brainix/Epi/IM-0001-000%d.dcm' % (i + 1)) | |
| 443 | |
| 444 origSeries = DoGet(_REMOTE, '/series')[0] | |
| 445 newSeries = DoPost(_REMOTE, '/series/%s/modify' % origSeries, | |
| 446 '{"Replace":{"PatientName":"Jodogne"}}', | |
| 447 'application/json')['ID'] | |
| 448 | |
| 449 self.assertEqual(origSeries, DoGet(_REMOTE, '/series/%s' % newSeries)['ModifiedFrom']) | |
| 450 instances = DoGet(_REMOTE, '/series/%s' % newSeries)['Instances'] | |
| 451 self.assertEqual(4, len(instances)) | |
| 452 for i in instances: | |
| 453 j = DoGet(_REMOTE, '/instances/%s' % i)['ModifiedFrom'] | |
| 454 self.assertEqual(newSeries, DoGet(_REMOTE, '/instances/%s' % i)['ParentSeries']) | |
| 455 self.assertEqual(origSeries, DoGet(_REMOTE, '/instances/%s' % j)['ParentSeries']) | |
| 456 | |
| 457 self.assertEqual('Jodogne', DoGet(_REMOTE, '/instances/%s/content/0010-0010' % i).strip()) | |
| 458 self.assertNotEqual('Jodogne', DoGet(_REMOTE, '/instances/%s/content/0010-0010' % j).strip()) | |
| 459 | |
| 460 | |
| 461 def test_modify_study(self): | |
| 462 # Upload 4 images from the 2 series of the same study | |
| 463 for i in range(4): | |
| 464 UploadInstance(_REMOTE, 'Brainix/Flair/IM-0001-000%d.dcm' % (i + 1)) | |
| 465 UploadInstance(_REMOTE, 'Brainix/Epi/IM-0001-000%d.dcm' % (i + 1)) | |
| 466 | |
| 467 origStudy = DoGet(_REMOTE, '/studies')[0] | |
| 468 newStudy = DoPost(_REMOTE, '/studies/%s/modify' % origStudy, | |
| 469 '{"Replace":{"PatientName":"Jodogne"}}', | |
| 470 'application/json')['ID'] | |
| 471 | |
| 472 self.assertEqual(origStudy, DoGet(_REMOTE, '/studies/%s' % newStudy)['ModifiedFrom']) | |
| 473 series = DoGet(_REMOTE, '/studies/%s' % newStudy)['Series'] | |
| 474 self.assertEqual(2, len(series)) | |
| 475 for s in series: | |
| 476 ss = DoGet(_REMOTE, '/series/%s' % s)['ModifiedFrom'] | |
| 477 self.assertEqual(newStudy, DoGet(_REMOTE, '/series/%s' % s)['ParentStudy']) | |
| 478 self.assertEqual(origStudy, DoGet(_REMOTE, '/series/%s' % ss)['ParentStudy']) | |
| 479 | |
| 480 instances = DoGet(_REMOTE, '/series/%s' % s)['Instances'] | |
| 481 for i in instances: | |
| 482 j = DoGet(_REMOTE, '/instances/%s' % i)['ModifiedFrom'] | |
| 483 self.assertEqual(s, DoGet(_REMOTE, '/instances/%s' % i)['ParentSeries']) | |
| 484 self.assertEqual(ss, DoGet(_REMOTE, '/instances/%s' % j)['ParentSeries']) | |
| 485 | |
| 486 self.assertEqual('Jodogne', DoGet(_REMOTE, '/instances/%s/content/0010-0010' % i).strip()) | |
| 487 self.assertNotEqual('Jodogne', DoGet(_REMOTE, '/instances/%s/content/0010-0010' % j).strip()) | |
| 488 | |
| 489 | |
| 490 def test_anonymize_series(self): | |
| 491 # Upload 4 images from the same series | |
| 492 for i in range(4): | |
| 493 UploadInstance(_REMOTE, 'Brainix/Epi/IM-0001-000%d.dcm' % (i + 1)) | |
| 494 | |
| 495 origSeries = DoGet(_REMOTE, '/series')[0] | |
| 496 newSeries = DoPost(_REMOTE, '/series/%s/anonymize' % origSeries, | |
| 497 '{}', | |
| 498 'application/json')['ID'] | |
| 499 | |
| 500 self.assertEqual(origSeries, DoGet(_REMOTE, '/series/%s' % newSeries)['AnonymizedFrom']) | |
| 501 instances = DoGet(_REMOTE, '/series/%s' % newSeries)['Instances'] | |
| 502 self.assertEqual(4, len(instances)) | |
| 503 for i in instances: | |
| 504 j = DoGet(_REMOTE, '/instances/%s' % i)['AnonymizedFrom'] | |
| 505 self.assertEqual(newSeries, DoGet(_REMOTE, '/instances/%s' % i)['ParentSeries']) | |
| 506 self.assertEqual(origSeries, DoGet(_REMOTE, '/instances/%s' % j)['ParentSeries']) | |
| 507 | |
| 508 DoGet(_REMOTE, '/instances/%s/content/0008-1010' % j) | |
| 509 self.assertRaises(Exception, lambda: DoGet(_REMOTE, '/instances/%s/content/0008-1010' % i)) | |
| 510 | |
| 511 | |
| 512 def test_anonymize_study(self): | |
| 513 # Upload 4 images from the 2 series of the same study | |
| 514 for i in range(4): | |
| 515 UploadInstance(_REMOTE, 'Brainix/Flair/IM-0001-000%d.dcm' % (i + 1)) | |
| 516 UploadInstance(_REMOTE, 'Brainix/Epi/IM-0001-000%d.dcm' % (i + 1)) | |
| 517 | |
| 518 origStudy = DoGet(_REMOTE, '/studies')[0] | |
| 519 newStudy = DoPost(_REMOTE,'/studies/%s/anonymize' % origStudy, | |
| 520 '{"Replace":{"PatientName":"Jodogne"}}', | |
| 521 'application/json')['ID'] | |
| 522 | |
| 523 self.assertEqual(origStudy, DoGet(_REMOTE, '/studies/%s' % newStudy)['AnonymizedFrom']) | |
| 524 series = DoGet(_REMOTE, '/studies/%s' % newStudy)['Series'] | |
| 525 self.assertEqual(2, len(series)) | |
| 526 for s in series: | |
| 527 ss = DoGet(_REMOTE, '/series/%s' % s)['AnonymizedFrom'] | |
| 528 self.assertEqual(newStudy, DoGet(_REMOTE, '/series/%s' % s)['ParentStudy']) | |
| 529 self.assertEqual(origStudy, DoGet(_REMOTE, '/series/%s' % ss)['ParentStudy']) | |
| 530 | |
| 531 instances = DoGet(_REMOTE, '/series/%s' % s)['Instances'] | |
| 532 for i in instances: | |
| 533 j = DoGet(_REMOTE, '/instances/%s' % i)['AnonymizedFrom'] | |
| 534 self.assertEqual(s, DoGet(_REMOTE, '/instances/%s' % i)['ParentSeries']) | |
| 535 self.assertEqual(ss, DoGet(_REMOTE, '/instances/%s' % j)['ParentSeries']) | |
| 536 | |
| 537 self.assertEqual('Jodogne', DoGet(_REMOTE, '/instances/%s/content/0010-0010' % i).strip()) | |
| 538 self.assertNotEqual('Jodogne', DoGet(_REMOTE, '/instances/%s/content/0010-0010' % j).strip()) | |
| 11 | 539 |
| 540 | |
| 541 | |
| 542 def test_storescu(self): | |
| 543 # Check emptiness | |
| 544 e = DoGet(_REMOTE, '/exports') | |
| 545 self.assertEqual(0, len(e['Exports'])) | |
| 546 self.assertEqual(0, e['Last']) | |
| 547 self.assertTrue(e['Done']) | |
| 548 e = DoGet(_REMOTE, '/exports?last') | |
| 549 self.assertEqual(0, len(e['Exports'])) | |
| 550 self.assertEqual(0, e['Last']) | |
| 551 self.assertTrue(e['Done']) | |
| 552 | |
| 553 # Add 1 instance | |
| 554 i = UploadInstance(_REMOTE, 'DummyCT.dcm')['ID'] | |
| 555 self.assertEqual(0, len(DoGet(_LOCAL, '/patients'))) | |
| 556 | |
| 557 # Export the instance | |
| 558 j = DoPost(_REMOTE, '/modalities/orthanctest/store', str(i), 'text/plain') # instance | |
| 559 self.assertEqual(1, len(DoGet(_LOCAL, '/patients'))) | |
| 560 self.assertEqual(1, len(DoGet(_LOCAL, '/studies'))) | |
| 561 self.assertEqual(1, len(DoGet(_LOCAL, '/series'))) | |
| 562 self.assertEqual(1, len(DoGet(_LOCAL, '/instances'))) | |
| 563 | |
| 564 e = DoGet(_REMOTE, '/exports') | |
| 565 self.assertEqual(1, len(e['Exports'])) | |
| 566 self.assertTrue(e['Done']) | |
| 567 self.assertEqual(e['Exports'][-1]['Seq'], e['Last']) | |
| 568 e = DoGet(_REMOTE, '/exports?limit=1') | |
| 569 self.assertEqual(1, len(e['Exports'])) | |
| 570 self.assertTrue(e['Done']) | |
| 571 self.assertEqual(e['Exports'][-1]['Seq'], e['Last']) | |
| 572 e = DoGet(_REMOTE, '/exports?last') | |
| 573 self.assertEqual(1, len(e['Exports'])) | |
| 574 self.assertTrue(e['Done']) | |
| 575 self.assertEqual(e['Exports'][-1]['Seq'], e['Last']) | |
| 576 seqInstance = e['Last'] | |
| 577 | |
| 578 # Export the series | |
| 579 j = DoPost(_REMOTE, '/modalities/orthanctest/store', 'f2635388-f01d497a-15f7c06b-ad7dba06-c4c599fe', 'text/plain') | |
| 580 | |
| 581 e = DoGet(_REMOTE, '/exports') | |
| 582 self.assertEqual(2, len(e['Exports'])) | |
| 583 self.assertTrue(e['Done']) | |
| 584 self.assertEqual(e['Exports'][-1]['Seq'], e['Last']) | |
| 585 seqSeries = e['Last'] | |
| 586 self.assertNotEqual(seqInstance, seqSeries) | |
| 587 e = DoGet(_REMOTE, '/exports?limit=1&since=0') | |
| 588 self.assertEqual(1, len(e['Exports'])) | |
| 589 self.assertFalse(e['Done']) | |
| 590 self.assertEqual(e['Exports'][-1]['Seq'], seqInstance) | |
| 591 e = DoGet(_REMOTE, '/exports?limit=1&since=' + str(seqInstance)) | |
| 592 self.assertEqual(1, len(e['Exports'])) | |
| 593 self.assertTrue(e['Done']) | |
| 594 self.assertEqual(e['Exports'][-1]['Seq'], seqSeries) | |
| 595 e = DoGet(_REMOTE, '/exports?last') | |
| 596 self.assertEqual(1, len(e['Exports'])) | |
| 597 self.assertTrue(e['Done']) | |
| 598 self.assertEqual(e['Exports'][-1]['Seq'], seqSeries) | |
| 599 | |
| 600 # Export the study | |
| 601 j = DoPost(_REMOTE, '/modalities/orthanctest/store', 'b9c08539-26f93bde-c81ab0d7-bffaf2cb-a4d0bdd0', 'text/plain') | |
| 602 seqStudy = DoGet(_REMOTE, '/exports')['Last'] | |
| 603 | |
| 604 # Export the patient | |
| 605 j = DoPost(_REMOTE, '/modalities/orthanctest/store', '6816cb19-844d5aee-85245eba-28e841e6-2414fae2', 'text/plain') | |
| 606 self.assertEqual(1, len(DoGet(_LOCAL, '/patients'))) | |
| 607 self.assertEqual(1, len(DoGet(_LOCAL, '/studies'))) | |
| 608 self.assertEqual(1, len(DoGet(_LOCAL, '/series'))) | |
| 609 self.assertEqual(1, len(DoGet(_LOCAL, '/instances'))) | |
| 610 | |
| 611 e = DoGet(_REMOTE, '/exports') | |
| 612 self.assertEqual(4, len(e['Exports'])) | |
| 613 self.assertTrue(e['Done']) | |
| 614 self.assertEqual(e['Exports'][-1]['Seq'], e['Last']) | |
| 615 seqPatient = e['Last'] | |
| 616 self.assertNotEqual(seqInstance, seqSeries) | |
| 617 self.assertNotEqual(seqSeries, seqStudy) | |
| 618 self.assertNotEqual(seqStudy, seqPatient) | |
| 619 self.assertTrue(seqInstance < seqSeries) | |
| 620 self.assertTrue(seqSeries < seqStudy) | |
| 621 self.assertTrue(seqStudy < seqPatient) | |
| 622 e = DoGet(_REMOTE, '/exports?limit=1&since=0') | |
| 623 self.assertEqual(1, len(e['Exports'])) | |
| 624 self.assertFalse(e['Done']) | |
| 625 self.assertEqual(e['Exports'][-1]['Seq'], seqInstance) | |
| 626 e = DoGet(_REMOTE, '/exports?limit=1&since=' + str(seqInstance)) | |
| 627 self.assertEqual(1, len(e['Exports'])) | |
| 628 self.assertFalse(e['Done']) | |
| 629 self.assertEqual(e['Exports'][-1]['Seq'], seqSeries) | |
| 630 e = DoGet(_REMOTE, '/exports?limit=1&since=' + str(seqSeries)) | |
| 631 self.assertEqual(1, len(e['Exports'])) | |
| 632 self.assertFalse(e['Done']) | |
| 633 self.assertEqual(e['Exports'][-1]['Seq'], seqStudy) | |
| 634 e = DoGet(_REMOTE, '/exports?limit=1&since=' + str(seqStudy)) | |
| 635 self.assertEqual(1, len(e['Exports'])) | |
| 636 self.assertTrue(e['Done']) | |
| 637 self.assertEqual(e['Exports'][-1]['Seq'], seqPatient) | |
| 638 e = DoGet(_REMOTE, '/exports?last') | |
| 639 self.assertEqual(1, len(e['Exports'])) | |
| 640 self.assertTrue(e['Done']) | |
| 641 self.assertEqual(e['Exports'][-1]['Seq'], seqPatient) | |
| 642 | |
| 643 | |
| 644 # Check the content of the logged information | |
| 645 e = DoGet(_REMOTE, '/exports')['Exports'] | |
| 646 | |
| 647 if 'PatientID' in e[0]: | |
| 648 # Since Orthanc 0.8.6 | |
| 649 patient = 'PatientID' | |
| 650 study = 'StudyInstanceUID' | |
| 651 series = 'SeriesInstanceUID' | |
| 652 instance = 'SOPInstanceUID' | |
| 653 else: | |
| 654 # Up to Orthanc 0.8.5 | |
| 655 patient = 'PatientId' | |
| 656 study = 'StudyInstanceUid' | |
| 657 series = 'SeriesInstanceUid' | |
| 658 instance = 'SopInstanceUid' | |
| 659 | |
| 660 for k in range(4): | |
| 661 self.assertTrue('Date' in e[k]) | |
| 662 self.assertTrue('Seq' in e[k]) | |
| 663 self.assertEqual('orthanctest', e[k]['RemoteModality']) | |
| 664 | |
| 665 self.assertEqual(10, len(e[0])) | |
| 666 self.assertEqual('Instance', e[0]['ResourceType']) | |
| 667 self.assertEqual('66a662ce-7430e543-bad44d47-0dc5a943-ec7a538d', e[0]['ID']) | |
| 668 self.assertEqual('/instances/66a662ce-7430e543-bad44d47-0dc5a943-ec7a538d', e[0]['Path']) | |
| 669 self.assertEqual('1.2.840.113619.2.176.2025.1499492.7040.1171286242.109', e[0][instance]) | |
| 670 self.assertEqual('1.2.840.113619.2.176.2025.1499492.7391.1171285944.394', e[0][series]) | |
| 671 self.assertEqual('1.2.840.113619.2.176.2025.1499492.7391.1171285944.390', e[0][study]) | |
| 672 self.assertEqual('ozp00SjY2xG', e[0][patient]) | |
| 673 | |
| 674 self.assertEqual(9, len(e[1])) | |
| 675 self.assertEqual('Series', e[1]['ResourceType']) | |
| 676 self.assertEqual('f2635388-f01d497a-15f7c06b-ad7dba06-c4c599fe', e[1]['ID']) | |
| 677 self.assertEqual('/series/f2635388-f01d497a-15f7c06b-ad7dba06-c4c599fe', e[1]['Path']) | |
| 678 self.assertEqual('1.2.840.113619.2.176.2025.1499492.7391.1171285944.394', e[1][series]) | |
| 679 self.assertEqual('1.2.840.113619.2.176.2025.1499492.7391.1171285944.390', e[1][study]) | |
| 680 self.assertEqual('ozp00SjY2xG', e[1][patient]) | |
| 681 | |
| 682 self.assertEqual(8, len(e[2])) | |
| 683 self.assertEqual('Study', e[2]['ResourceType']) | |
| 684 self.assertEqual('b9c08539-26f93bde-c81ab0d7-bffaf2cb-a4d0bdd0', e[2]['ID']) | |
| 685 self.assertEqual('/studies/b9c08539-26f93bde-c81ab0d7-bffaf2cb-a4d0bdd0', e[2]['Path']) | |
| 686 self.assertEqual('1.2.840.113619.2.176.2025.1499492.7391.1171285944.390', e[2][study]) | |
| 687 self.assertEqual('ozp00SjY2xG', e[2][patient]) | |
| 688 | |
| 689 self.assertEqual(7, len(e[3])) | |
| 690 self.assertEqual('Patient', e[3]['ResourceType']) | |
| 691 self.assertEqual('6816cb19-844d5aee-85245eba-28e841e6-2414fae2', e[3]['ID']) | |
| 692 self.assertEqual('/patients/6816cb19-844d5aee-85245eba-28e841e6-2414fae2', e[3]['Path']) | |
| 693 self.assertEqual('ozp00SjY2xG', e[3][patient]) | |
| 694 | |
| 695 DropOrthanc(_REMOTE) | |
| 696 self.assertEqual(0, len(DoGet(_REMOTE, '/exports')['Exports'])) | |
| 697 | |
| 698 | |
| 699 def test_store_peer(self): | |
| 700 self.assertEqual(0, len(DoGet(_LOCAL, '/exports')['Exports'])) | |
| 701 self.assertEqual(0, len(DoGet(_REMOTE, '/exports')['Exports'])) | |
| 702 | |
| 703 i = UploadInstance(_REMOTE, 'DummyCT.dcm')['ID'] | |
| 704 self.assertEqual(0, len(DoGet(_LOCAL, '/patients'))) | |
| 705 self.assertEqual(1, len(DoGet(_REMOTE, '/patients'))) | |
| 706 | |
| 707 j = DoPost(_REMOTE, '/peers/peer/store', str(i), 'text/plain') | |
| 708 self.assertEqual(1, len(DoGet(_LOCAL, '/patients'))) | |
| 709 self.assertEqual(1, len(DoGet(_REMOTE, '/patients'))) | |
| 710 | |
| 711 self.assertEqual(1, len(DoGet(_REMOTE, '/exports')['Exports'])) | |
| 712 | |
| 713 DropOrthanc(_REMOTE) | |
| 714 self.assertEqual(0, len(DoGet(_REMOTE, '/exports')['Exports'])) | |
| 715 | |
| 716 | |
| 717 def test_bulk_storescu(self): | |
| 718 self.assertEqual(0, len(DoGet(_LOCAL, '/patients'))) | |
| 719 | |
| 720 a = UploadInstance(_REMOTE, 'Knee/T1/IM-0001-0001.dcm') | |
| 721 b = UploadInstance(_REMOTE, 'Knee/T2/IM-0001-0001.dcm') | |
| 722 | |
| 723 j = DoPost(_REMOTE, '/modalities/orthanctest/store', [ a['ID'], b['ID'] ], 'application/json') | |
| 724 self.assertEqual(2, len(DoGet(_LOCAL, '/instances'))) | |
| 725 | |
| 726 DropOrthanc(_LOCAL) | |
| 727 | |
| 728 # Send using patient's UUID | |
| 729 self.assertEqual(0, len(DoGet(_LOCAL, '/instances'))) | |
| 730 j = DoPost(_REMOTE, '/modalities/orthanctest/store', | |
| 731 [ 'ca29faea-b6a0e17f-067743a1-8b778011-a48b2a17' ], 'application/json') | |
| 732 self.assertEqual(2, len(DoGet(_LOCAL, '/instances'))) | |
| 733 | |
| 734 | |
| 735 def test_color(self): | |
| 736 i = UploadInstance(_REMOTE, 'ColorTestMalaterre.dcm')['ID'] | |
| 737 im = GetImage(_REMOTE, '/instances/%s/preview' % i) | |
| 738 self.assertEqual("RGB", im.mode) | |
| 739 self.assertEqual(41, im.size[0]) | |
| 740 self.assertEqual(41, im.size[1]) | |
| 741 | |
| 742 # http://effbot.org/zone/pil-comparing-images.htm | |
| 743 truth = Image.open(os.path.join(os.path.dirname(__file__), '..', 'Database', 'ColorTestMalaterre.png')) | |
| 744 self.assertTrue(ImageChops.difference(im, truth).getbbox() is None) | |
| 745 | |
| 746 |