Mercurial > hg > orthanc-tests
annotate Tests/Tests.py @ 14:ed9a9fe66002
cont
author | Sebastien Jodogne <s.jodogne@gmail.com> |
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date | Thu, 18 Jun 2015 17:38:31 +0200 |
parents | 7b69a561f4d3 |
children | 2e5dbbbe3889 |
rev | line source |
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3 | 1 # Orthanc - A Lightweight, RESTful DICOM Store |
2 # Copyright (C) 2012-2015 Sebastien Jodogne, Medical Physics | |
3 # Department, University Hospital of Liege, Belgium | |
4 # | |
5 # This program is free software: you can redistribute it and/or | |
6 # modify it under the terms of the GNU General Public License as | |
7 # published by the Free Software Foundation, either version 3 of the | |
8 # License, or (at your option) any later version. | |
9 # | |
10 # This program is distributed in the hope that it will be useful, but | |
11 # WITHOUT ANY WARRANTY; without even the implied warranty of | |
12 # MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU | |
13 # General Public License for more details. | |
14 # | |
15 # You should have received a copy of the GNU General Public License | |
16 # along with this program. If not, see <http://www.gnu.org/licenses/>. | |
17 | |
18 | |
14 | 19 import tempfile |
3 | 20 import unittest |
21 | |
11 | 22 from PIL import ImageChops |
3 | 23 from Toolbox import * |
13 | 24 from xml.dom import minidom |
3 | 25 |
26 _LOCAL = None | |
27 _REMOTE = None | |
28 | |
29 | |
30 def SetOrthancParameters(local, remote): | |
31 global _LOCAL, _REMOTE | |
32 _LOCAL = local | |
33 _REMOTE = remote | |
34 | |
35 | |
14 | 36 def ExtractDicomTags(rawDicom, tags): |
37 with tempfile.NamedTemporaryFile(delete = True) as f: | |
38 f.write(rawDicom) | |
39 f.flush() | |
40 data = subprocess.check_output([ 'dcm2xml', f.name ]) | |
41 | |
42 result = [] | |
43 for tag in tags: | |
44 match = re.search('<element[^>]+name="%s">([^>]*)</element>' % tag, data) | |
45 if match == None: | |
46 result.append('') | |
47 else: | |
48 result.append(match.group(1)) | |
49 | |
50 return result | |
51 | |
52 | |
3 | 53 class Orthanc(unittest.TestCase): |
54 def setUp(self): | |
55 DropOrthanc(_LOCAL) | |
56 DropOrthanc(_REMOTE) | |
57 | |
58 def test_system(self): | |
59 self.assertTrue('Version' in DoGet(_REMOTE, '/system')) | |
60 self.assertEqual('0', DoGet(_REMOTE, '/statistics')['TotalDiskSize']) | |
61 self.assertEqual('0', DoGet(_REMOTE, '/statistics')['TotalUncompressedSize']) | |
62 | |
63 def test_upload(self): | |
64 u = UploadInstance(_REMOTE, 'DummyCT.dcm') | |
65 self.assertEqual('Success', u['Status']) | |
66 u = UploadInstance(_REMOTE, 'DummyCT.dcm') | |
67 self.assertEqual('AlreadyStored', u['Status']) | |
68 self.assertEqual(1, len(DoGet(_REMOTE, '/patients'))) | |
69 self.assertEqual(1, len(DoGet(_REMOTE, '/studies'))) | |
70 self.assertEqual(1, len(DoGet(_REMOTE, '/series'))) | |
71 self.assertEqual(1, len(DoGet(_REMOTE, '/instances'))) | |
72 | |
73 i = DoGet(_REMOTE, '/instances/%s/simplified-tags' % u['ID']) | |
74 self.assertEqual('20070101', i['StudyDate']) | |
75 | |
76 | |
5 | 77 def test_upload_2(self): |
3 | 78 i = UploadInstance(_REMOTE, 'DummyCT.dcm')['ID'] |
79 instance = DoGet(_REMOTE, '/instances/%s' % i) | |
80 self.assertEqual(i, instance['ID']) | |
81 self.assertEqual('1.2.840.113619.2.176.2025.1499492.7040.1171286242.109', | |
82 instance['MainDicomTags']['SOPInstanceUID']) | |
83 | |
84 series = DoGet(_REMOTE, '/series/%s' % instance['ParentSeries']) | |
85 self.assertEqual('1.2.840.113619.2.176.2025.1499492.7391.1171285944.394', | |
86 series['MainDicomTags']['SeriesInstanceUID']) | |
87 | |
88 study = DoGet(_REMOTE, '/studies/%s' % series['ParentStudy']) | |
89 self.assertEqual('1.2.840.113619.2.176.2025.1499492.7391.1171285944.390', | |
90 study['MainDicomTags']['StudyInstanceUID']) | |
91 | |
92 patient = DoGet(_REMOTE, '/patients/%s' % study['ParentPatient']) | |
93 self.assertEqual('ozp00SjY2xG', | |
94 patient['MainDicomTags']['PatientID']) | |
95 | |
96 dicom = DoGet(_REMOTE, '/instances/%s/file' % instance['ID']) | |
97 self.assertEqual(2472, len(dicom)) | |
98 self.assertEqual('3e29b869978b6db4886355a2b1132124', ComputeMD5(dicom)) | |
99 self.assertEqual(1, len(DoGet(_REMOTE, '/instances/%s/frames' % i))) | |
100 self.assertEqual('TWINOW', DoGet(_REMOTE, '/instances/%s/simplified-tags' % i)['StationName']) | |
101 self.assertEqual('TWINOW', DoGet(_REMOTE, '/instances/%s/tags' % i)['0008,1010']['Value']) | |
102 | |
103 | |
5 | 104 def test_images(self): |
105 i = UploadInstance(_REMOTE, 'Phenix/IM-0001-0001.dcm')['ID'] | |
106 self.assertEqual(1, len(DoGet(_REMOTE, '/instances/%s/frames' % i))) | |
3 | 107 |
5 | 108 im = GetImage(_REMOTE, '/instances/%s/preview' % i) |
109 self.assertEqual("L", im.mode) | |
110 self.assertEqual(512, im.size[0]) | |
111 self.assertEqual(358, im.size[1]) | |
112 | |
113 im = GetImage(_REMOTE, '/instances/%s/image-uint8' % i) | |
114 self.assertEqual("L", im.mode) | |
115 self.assertEqual(512, im.size[0]) | |
116 self.assertEqual(358, im.size[1]) | |
117 | |
118 im = GetImage(_REMOTE, '/instances/%s/image-uint16' % i) | |
119 self.assertEqual(512, im.size[0]) | |
120 self.assertEqual(358, im.size[1]) | |
121 | |
122 im = GetImage(_REMOTE, '/instances/%s/frames/0/preview' % i) | |
123 self.assertEqual("L", im.mode) | |
124 self.assertEqual(512, im.size[0]) | |
125 self.assertEqual(358, im.size[1]) | |
126 | |
127 im = GetImage(_REMOTE, '/instances/%s/frames/0/image-uint8' % i) | |
128 self.assertEqual("L", im.mode) | |
129 self.assertEqual(512, im.size[0]) | |
130 self.assertEqual(358, im.size[1]) | |
131 | |
132 im = GetImage(_REMOTE, '/instances/%s/frames/0/image-uint16' % i) | |
133 self.assertEqual(512, im.size[0]) | |
134 self.assertEqual(358, im.size[1]) | |
135 | |
6 | 136 |
137 def test_hierarchy(self): | |
138 UploadFolder(_REMOTE, 'Brainix/Epi') | |
139 UploadFolder(_REMOTE, 'Brainix/Flair') | |
140 UploadFolder(_REMOTE, 'Knee/T1') | |
141 UploadFolder(_REMOTE, 'Knee/T2') | |
142 | |
143 p = DoGet(_REMOTE, '/patients') | |
144 s = DoGet(_REMOTE, '/studies') | |
145 t = DoGet(_REMOTE, '/series') | |
146 self.assertEqual(2, len(p)) | |
147 self.assertEqual(2, len(s)) | |
148 self.assertEqual(4, len(t)) | |
149 self.assertEqual(94, len(DoGet(_REMOTE, '/instances'))) | |
150 | |
151 brainixPatient = '16738bc3-e47ed42a-43ce044c-a3414a45-cb069bd0' | |
152 brainixStudy = '27f7126f-4f66fb14-03f4081b-f9341db2-53925988' | |
153 brainixEpi = '2ac1316d-3e432022-62eabff2-c59f5475-9b1ac3f8' | |
154 brainixFlair = '1e2c125c-411b8e86-3f4fe68e-a7584dd3-c6da78f0' | |
155 | |
156 kneePatient = 'ca29faea-b6a0e17f-067743a1-8b778011-a48b2a17' | |
157 kneeStudy = '0a9b3153-2512774b-2d9580de-1fc3dcf6-3bd83918' | |
158 kneeT1 = '6de73705-c4e65c1b-9d9ea1b5-cabcd8e7-f15e4285' | |
159 kneeT2 = 'bbf7a453-0d34251a-03663b55-46bb31b9-ffd74c59' | |
160 | |
161 self.assertTrue(brainixPatient in p) | |
162 self.assertTrue(kneePatient in p) | |
163 self.assertTrue(brainixStudy in s) | |
164 self.assertTrue(kneeStudy in s) | |
165 self.assertTrue(brainixEpi in t) | |
166 self.assertTrue(brainixFlair in t) | |
167 self.assertTrue(kneeT1 in t) | |
168 self.assertTrue(kneeT2 in t) | |
169 | |
170 self.assertEqual(44, len(DoGet(_REMOTE, '/patients/%s/instances' % brainixPatient))) | |
171 self.assertEqual(2, len(DoGet(_REMOTE, '/patients/%s/series' % brainixPatient))) | |
172 self.assertEqual(1, len(DoGet(_REMOTE, '/patients/%s/studies' % brainixPatient))) | |
173 | |
174 self.assertEqual(50, len(DoGet(_REMOTE, '/patients/%s/instances' % kneePatient))) | |
175 self.assertEqual(2, len(DoGet(_REMOTE, '/patients/%s/series' % kneePatient))) | |
176 self.assertEqual(1, len(DoGet(_REMOTE, '/patients/%s/studies' % kneePatient))) | |
177 | |
178 self.assertEqual(2, len(DoGet(_REMOTE, '/studies/%s/series' % brainixStudy))) | |
179 self.assertEqual(44, len(DoGet(_REMOTE, '/studies/%s/instances' % brainixStudy))) | |
180 | |
181 self.assertEqual(2, len(DoGet(_REMOTE, '/studies/%s/series' % kneeStudy))) | |
182 self.assertEqual(50, len(DoGet(_REMOTE, '/studies/%s/instances' % kneeStudy))) | |
183 | |
184 self.assertEqual(22, len(DoGet(_REMOTE, '/series/%s/instances' % brainixEpi))) | |
185 self.assertEqual(22, len(DoGet(_REMOTE, '/series/%s/instances' % brainixFlair))) | |
186 self.assertEqual(24, len(DoGet(_REMOTE, '/series/%s/instances' % kneeT1))) | |
187 self.assertEqual(26, len(DoGet(_REMOTE, '/series/%s/instances' % kneeT2))) | |
188 | |
189 for patient in p: | |
190 for study in DoGet(_REMOTE, '/patients/%s/studies' % patient): | |
191 self.assertEqual(patient, study['ParentPatient']) | |
192 for series in DoGet(_REMOTE, '/studies/%s/series' % study['ID']): | |
193 self.assertEqual(study['ID'], series['ParentStudy']) | |
194 for instance in DoGet(_REMOTE, '/series/%s/instances' % series['ID']): | |
195 self.assertEqual(series['ID'], instance['ParentSeries']) | |
196 | |
197 self.assertEqual(json.dumps(DoGet(_REMOTE, '/instances/%s/attachments/dicom-as-json/data' % instance['ID'])), | |
198 json.dumps(DoGet(_REMOTE, '/instances/%s/tags' % instance['ID']))) | |
199 | |
200 | |
201 r = DoDelete(_REMOTE, "/studies/%s" % brainixStudy)['RemainingAncestor'] | |
202 self.assertEqual(1, len(DoGet(_REMOTE, '/patients'))) | |
203 self.assertEqual(1, len(DoGet(_REMOTE, '/studies'))) | |
204 self.assertEqual(2, len(DoGet(_REMOTE, '/series'))) | |
205 self.assertEqual(50, len(DoGet(_REMOTE, '/instances'))) | |
206 self.assertEqual(None, r) | |
207 | |
208 r = DoDelete(_REMOTE, "/series/%s" % kneeT2)['RemainingAncestor'] | |
209 self.assertEqual(1, len(DoGet(_REMOTE, '/patients'))) | |
210 self.assertEqual(1, len(DoGet(_REMOTE, '/studies'))) | |
211 self.assertEqual(1, len(DoGet(_REMOTE, '/series'))) | |
212 self.assertEqual(24, len(DoGet(_REMOTE, '/instances'))) | |
213 self.assertEqual('Study', r['Type']) | |
214 self.assertEqual(kneeStudy, r['ID']) | |
215 | |
216 r = DoDelete(_REMOTE, "/instances/%s" % DoGet(_REMOTE, '/instances')[0])['RemainingAncestor'] | |
217 self.assertEqual(1, len(DoGet(_REMOTE, '/patients'))) | |
218 self.assertEqual(1, len(DoGet(_REMOTE, '/studies'))) | |
219 self.assertEqual(1, len(DoGet(_REMOTE, '/series'))) | |
220 self.assertEqual(23, len(DoGet(_REMOTE, '/instances'))) | |
221 self.assertEqual('Series', r['Type']) | |
222 self.assertEqual(kneeT1, r['ID']) | |
223 | |
224 r = DoDelete(_REMOTE, "/patients/%s" % kneePatient)['RemainingAncestor'] | |
225 self.assertEqual(0, len(DoGet(_REMOTE, '/patients'))) | |
226 self.assertEqual(0, len(DoGet(_REMOTE, '/studies'))) | |
227 self.assertEqual(0, len(DoGet(_REMOTE, '/series'))) | |
228 self.assertEqual(0, len(DoGet(_REMOTE, '/instances'))) | |
229 self.assertEqual(None, r) | |
230 | |
231 DropOrthanc(_REMOTE) | |
232 self.assertEqual('0', DoGet(_REMOTE, '/statistics')['TotalDiskSize']) | |
233 self.assertEqual('0', DoGet(_REMOTE, '/statistics')['TotalUncompressedSize']) | |
7 | 234 |
235 | |
236 def test_multi_frame(self): | |
237 i = UploadInstance(_REMOTE, 'Multiframe.dcm')['ID'] | |
238 self.assertEqual(76, len(DoGet(_REMOTE, '/instances/%s/frames' % i))) | |
239 | |
240 im = GetImage(_REMOTE, '/instances/%s/frames/0/preview' % i) | |
241 self.assertEqual("L", im.mode) | |
242 self.assertEqual(512, im.size[0]) | |
243 self.assertEqual(512, im.size[1]) | |
244 | |
245 DoGet(_REMOTE, '/instances/%s/frames/0/image-uint8' % i) | |
246 DoGet(_REMOTE, '/instances/%s/frames/0/image-uint16' % i) | |
247 DoGet(_REMOTE, '/instances/%s/frames/75/preview' % i) | |
248 self.assertRaises(Exception, lambda: DoGet(_REMOTE, '/instances/%s/frames/aaa/preview' % i)) | |
249 self.assertRaises(Exception, lambda: DoGet(_REMOTE, '/instances/%s/frames/76/preview' % i)) | |
250 | |
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251 |
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252 def test_changes(self): |
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253 # Check emptiness |
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254 c = DoGet(_REMOTE, '/changes') |
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255 self.assertEqual(0, len(c['Changes'])) |
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256 self.assertEqual(0, c['Last']) |
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257 self.assertTrue(c['Done']) |
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258 c = DoGet(_REMOTE, '/changes?last') |
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259 self.assertEqual(0, len(c['Changes'])) |
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260 self.assertEqual(0, c['Last']) |
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261 self.assertTrue(c['Done']) |
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262 |
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263 # Add 1 instance |
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264 i = UploadInstance(_REMOTE, 'Brainix/Flair/IM-0001-0001.dcm')['ID'] |
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265 c = DoGet(_REMOTE, '/changes') |
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266 begin = c['Last'] |
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267 self.assertEqual(4, len(c['Changes'])) |
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268 self.assertTrue(c['Done']) |
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269 self.assertEqual(c['Changes'][-1]['Seq'], c['Last']) |
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270 |
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271 c = DoGet(_REMOTE, '/changes?last') |
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272 self.assertEqual(1, len(c['Changes'])) |
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273 self.assertEqual(begin, c['Last']) |
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274 self.assertTrue(c['Done']) |
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275 c = DoGet(_REMOTE, '/changes?limit=1&since=' + str(begin - 1)) |
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276 self.assertEqual(1, len(c['Changes'])) |
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277 self.assertEqual(begin, c['Last']) |
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278 self.assertTrue(c['Done']) |
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279 c = DoGet(_REMOTE, '/changes?limit=1&since=' + str(begin - 2)) |
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280 self.assertEqual(1, len(c['Changes'])) |
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281 self.assertEqual(begin - 1, c['Last']) |
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282 self.assertFalse(c['Done']) |
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283 c = DoGet(_REMOTE, '/changes?limit=1&since=' + str(begin - 3)) |
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284 self.assertEqual(1, len(c['Changes'])) |
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285 self.assertEqual(begin - 2, c['Last']) |
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286 self.assertFalse(c['Done']) |
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287 |
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288 UploadFolder(_REMOTE, 'Knee/T1') |
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289 UploadFolder(_REMOTE, 'Knee/T2') |
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290 since = begin |
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291 countPatients = 0 |
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292 countStudies = 0 |
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293 countSeries = 0 |
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294 countInstances = 0 |
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295 completed = 0 |
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296 while True: |
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297 c = DoGet(_REMOTE, '/changes', { 'since' : since, 'limit' : 3 }) |
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298 since = c['Last'] |
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299 for i in c['Changes']: |
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300 if i['ResourceType'] == 'Instance': |
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301 countInstances += 1 |
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302 if i['ResourceType'] == 'Patient': |
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303 countPatients += 1 |
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304 if i['ResourceType'] == 'Study': |
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305 countStudies += 1 |
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306 if i['ResourceType'] == 'Series': |
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307 countSeries += 1 |
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308 if i['ChangeType'] == 'NewInstance': |
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309 countInstances += 1 |
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310 if i['ChangeType'] == 'NewPatient': |
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311 countPatients += 1 |
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312 if i['ChangeType'] == 'NewStudy': |
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313 countStudies += 1 |
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314 if i['ChangeType'] == 'NewSeries': |
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315 countSeries += 1 |
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316 if i['ChangeType'] == 'CompletedSeries': |
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317 completed += 1 |
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318 self.assertTrue('ID' in i) |
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319 self.assertTrue('Path' in i) |
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320 self.assertTrue('Seq' in i) |
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321 if c['Done']: |
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322 break |
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323 |
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324 self.assertEqual(2 * 50, countInstances) |
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325 self.assertEqual(2 * 1, countPatients) |
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326 self.assertEqual(2 * 1, countStudies) |
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327 self.assertEqual(2 * 2, countSeries) |
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328 self.assertEqual(0, completed) |
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329 |
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330 |
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331 def test_archive(self): |
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332 UploadInstance(_REMOTE, 'Knee/T1/IM-0001-0001.dcm') |
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333 UploadInstance(_REMOTE, 'Knee/T2/IM-0001-0001.dcm') |
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334 |
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335 z = GetArchive(_REMOTE, '/patients/%s/archive' % DoGet(_REMOTE, '/patients')[0]) |
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336 self.assertEqual(2, len(z.namelist())) |
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337 |
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338 z = GetArchive(_REMOTE, '/studies/%s/archive' % DoGet(_REMOTE, '/studies')[0]) |
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339 self.assertEqual(2, len(z.namelist())) |
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340 |
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341 z = GetArchive(_REMOTE, '/series/%s/archive' % DoGet(_REMOTE, '/series')[0]) |
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342 self.assertEqual(1, len(z.namelist())) |
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343 |
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344 UploadInstance(_REMOTE, 'Brainix/Flair/IM-0001-0001.dcm') |
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345 |
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346 z = GetArchive(_REMOTE, '/patients/%s/archive' % DoGet(_REMOTE, '/patients')[0]) |
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347 self.assertEqual(2, len(z.namelist())) |
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348 |
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349 |
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350 def test_media_archive(self): |
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351 UploadInstance(_REMOTE, 'Knee/T1/IM-0001-0001.dcm') |
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352 UploadInstance(_REMOTE, 'Knee/T2/IM-0001-0001.dcm') |
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353 |
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354 z = GetArchive(_REMOTE, '/patients/%s/media' % DoGet(_REMOTE, '/patients')[0]) |
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355 self.assertEqual(3, len(z.namelist())) |
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356 self.assertTrue('IMAGES/IM0' in z.namelist()) |
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357 self.assertTrue('IMAGES/IM1' in z.namelist()) |
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358 self.assertTrue('DICOMDIR' in z.namelist()) |
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359 |
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360 try: |
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361 os.remove('/tmp/DICOMDIR') |
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362 except: |
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363 # The file does not exist |
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364 pass |
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365 |
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366 z.extract('DICOMDIR', '/tmp') |
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367 a = subprocess.check_output([ 'dciodvfy', '/tmp/DICOMDIR' ], |
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368 stderr = subprocess.STDOUT).split('\n') |
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369 self.assertEqual(3, len(a)) |
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370 self.assertTrue(a[0].startswith('Warning')) |
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371 self.assertEqual('BasicDirectory', a[1]) |
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372 self.assertEqual('', a[2]) |
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373 |
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374 a = subprocess.check_output([ 'dcentvfy', '/tmp/DICOMDIR' ], |
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375 stderr = subprocess.STDOUT).split('\n') |
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376 self.assertEqual(1, len(a)) |
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377 self.assertEqual('', a[0]) |
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378 |
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379 a = subprocess.check_output([ 'dcm2xml', '/tmp/DICOMDIR' ]) |
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380 self.assertTrue(re.search('1.3.46.670589.11.17521.5.0.3124.2008081908590448738', a) != None) |
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381 self.assertTrue(re.search('1.3.46.670589.11.17521.5.0.3124.2008081909113806560', a) != None) |
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382 |
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383 os.remove('/tmp/DICOMDIR') |
10 | 384 |
385 | |
386 def test_protection(self): | |
387 UploadInstance(_REMOTE, 'Knee/T1/IM-0001-0001.dcm') | |
388 UploadInstance(_REMOTE, 'Brainix/Flair/IM-0001-0001.dcm') | |
389 self.assertEqual(2, len(DoGet(_REMOTE, '/patients'))) | |
390 a = DoGet(_REMOTE, '/patients')[0] | |
391 b = DoGet(_REMOTE, '/patients')[1] | |
392 self.assertEqual(0, DoGet(_REMOTE, '/patients/%s/protected' % a)) | |
393 DoPut(_REMOTE, '/patients/%s/protected' % a, '0', 'text/plain') | |
394 self.assertEqual(0, DoGet(_REMOTE, '/patients/%s/protected' % a)) | |
395 DoPut(_REMOTE, '/patients/%s/protected' % a, '1', 'text/plain') | |
396 self.assertEqual(1, DoGet(_REMOTE, '/patients/%s/protected' % a)) | |
397 DoPut(_REMOTE, '/patients/%s/protected' % a, '0', 'text/plain') | |
398 self.assertEqual(0, DoGet(_REMOTE, '/patients/%s/protected' % a)) | |
399 | |
400 | |
12 | 401 def test_raw_tags(self): |
10 | 402 i = UploadInstance(_REMOTE, 'PrivateTags.dcm')['ID'] |
403 | |
404 dicom = DoGet(_REMOTE, '/instances/%s/file' % i) | |
405 self.assertEqual('1a7c56cb02d6e742cc9c856a8ac182e3', ComputeMD5(dicom)) | |
406 | |
407 s = '/instances/%s/content/' % i | |
408 | |
409 self.assertEqual('LOGIQBOOK', DoGet(_REMOTE, s + '0008-1010').strip()) | |
410 self.assertRaises(Exception, lambda: DoGet(_REMOTE, s + '0008-1011')) | |
411 | |
412 self.assertEqual('Abdomen', DoGet(_REMOTE, s + '7fe1-1001/0/7fe1-1008/0/7fe1-1057').strip()) | |
413 self.assertEqual('cla_3c', DoGet(_REMOTE, s + '7fe1-1001/0/7fe1-1008/8/7fe1-1057').strip()) | |
414 | |
415 UploadInstance(_REMOTE, 'Brainix/Epi/IM-0001-0001.dcm') | |
416 UploadInstance(_REMOTE, 'Brainix/Flair/IM-0001-0001.dcm') | |
417 UploadInstance(_REMOTE, 'Knee/T1/IM-0001-0001.dcm') | |
418 UploadInstance(_REMOTE, 'Knee/T2/IM-0001-0001.dcm') | |
419 | |
420 for i in DoGet(_REMOTE, '/instances'): | |
421 aid = DoGet(_REMOTE, '/instances/%s' % i)['MainDicomTags']['SOPInstanceUID'] | |
422 self.assertEqual(aid, DoGet(_REMOTE, '/instances/%s/content/0008-0018' % i).replace(chr(0), '')) | |
423 | |
424 | |
425 def test_raw_tags_mdn(self): | |
426 # Bug reported by Cyril Paulus | |
427 i = UploadInstance(_REMOTE, 'PrivateMDNTags.dcm')['ID'] | |
428 self.assertAlmostEqual(0.000027, DoGet(_REMOTE, '/instances/%s/content/7053-1000' % i)) | |
429 | |
430 | |
431 def test_modify_instance(self): | |
432 i = UploadInstance(_REMOTE, 'PrivateTags.dcm')['ID'] | |
433 modified = DoPost(_REMOTE, '/instances/%s/modify' % i, | |
434 json.dumps({ | |
435 "Replace" : { | |
436 "PatientName" : "hello", | |
437 #"PatientID" : "world" | |
438 }, | |
439 "Remove" : [ "StationName" ], | |
440 "RemovePrivateTags" : None | |
441 }), | |
442 'application/json') | |
443 j = DoPost(_REMOTE, '/instances', modified, 'application/dicom')['ID'] | |
444 | |
445 self.assertNotEqual('hello', DoGet(_REMOTE, '/instances/%s/content/0010-0010' % i).strip()) | |
446 #self.assertNotEqual('world', DoGet(_REMOTE, '/instances/%s/content/0010-0020' % i).strip()) | |
447 self.assertEqual('LOGIQBOOK', DoGet(_REMOTE, '/instances/%s/content/0008-1010' % i).strip()) | |
448 DoGet(_REMOTE, '/instances/%s/content/6003-1010' % i) # Some private tag | |
449 | |
450 self.assertEqual('hello', DoGet(_REMOTE, '/instances/%s/content/0010-0010' % j).strip()) | |
451 #self.assertEqual('world', DoGet(_REMOTE, '/instances/%s/content/0010-0020' % j).strip()) | |
452 self.assertRaises(Exception, lambda: DoGet(_REMOTE, '/instances/%s/content/0008-1010' % j)) | |
453 self.assertRaises(Exception, lambda: DoGet(_REMOTE, '/instances/%s/content/6003-1010' % j)) | |
454 | |
455 | |
456 def test_modify_series(self): | |
457 # Upload 4 images from the same series | |
458 for i in range(4): | |
459 UploadInstance(_REMOTE, 'Brainix/Epi/IM-0001-000%d.dcm' % (i + 1)) | |
460 | |
461 origSeries = DoGet(_REMOTE, '/series')[0] | |
462 newSeries = DoPost(_REMOTE, '/series/%s/modify' % origSeries, | |
463 '{"Replace":{"PatientName":"Jodogne"}}', | |
464 'application/json')['ID'] | |
465 | |
466 self.assertEqual(origSeries, DoGet(_REMOTE, '/series/%s' % newSeries)['ModifiedFrom']) | |
467 instances = DoGet(_REMOTE, '/series/%s' % newSeries)['Instances'] | |
468 self.assertEqual(4, len(instances)) | |
469 for i in instances: | |
470 j = DoGet(_REMOTE, '/instances/%s' % i)['ModifiedFrom'] | |
471 self.assertEqual(newSeries, DoGet(_REMOTE, '/instances/%s' % i)['ParentSeries']) | |
472 self.assertEqual(origSeries, DoGet(_REMOTE, '/instances/%s' % j)['ParentSeries']) | |
473 | |
474 self.assertEqual('Jodogne', DoGet(_REMOTE, '/instances/%s/content/0010-0010' % i).strip()) | |
475 self.assertNotEqual('Jodogne', DoGet(_REMOTE, '/instances/%s/content/0010-0010' % j).strip()) | |
476 | |
477 | |
478 def test_modify_study(self): | |
479 # Upload 4 images from the 2 series of the same study | |
480 for i in range(4): | |
481 UploadInstance(_REMOTE, 'Brainix/Flair/IM-0001-000%d.dcm' % (i + 1)) | |
482 UploadInstance(_REMOTE, 'Brainix/Epi/IM-0001-000%d.dcm' % (i + 1)) | |
483 | |
484 origStudy = DoGet(_REMOTE, '/studies')[0] | |
485 newStudy = DoPost(_REMOTE, '/studies/%s/modify' % origStudy, | |
486 '{"Replace":{"PatientName":"Jodogne"}}', | |
487 'application/json')['ID'] | |
488 | |
489 self.assertEqual(origStudy, DoGet(_REMOTE, '/studies/%s' % newStudy)['ModifiedFrom']) | |
490 series = DoGet(_REMOTE, '/studies/%s' % newStudy)['Series'] | |
491 self.assertEqual(2, len(series)) | |
492 for s in series: | |
493 ss = DoGet(_REMOTE, '/series/%s' % s)['ModifiedFrom'] | |
494 self.assertEqual(newStudy, DoGet(_REMOTE, '/series/%s' % s)['ParentStudy']) | |
495 self.assertEqual(origStudy, DoGet(_REMOTE, '/series/%s' % ss)['ParentStudy']) | |
496 | |
497 instances = DoGet(_REMOTE, '/series/%s' % s)['Instances'] | |
498 for i in instances: | |
499 j = DoGet(_REMOTE, '/instances/%s' % i)['ModifiedFrom'] | |
500 self.assertEqual(s, DoGet(_REMOTE, '/instances/%s' % i)['ParentSeries']) | |
501 self.assertEqual(ss, DoGet(_REMOTE, '/instances/%s' % j)['ParentSeries']) | |
502 | |
503 self.assertEqual('Jodogne', DoGet(_REMOTE, '/instances/%s/content/0010-0010' % i).strip()) | |
504 self.assertNotEqual('Jodogne', DoGet(_REMOTE, '/instances/%s/content/0010-0010' % j).strip()) | |
505 | |
506 | |
507 def test_anonymize_series(self): | |
508 # Upload 4 images from the same series | |
509 for i in range(4): | |
510 UploadInstance(_REMOTE, 'Brainix/Epi/IM-0001-000%d.dcm' % (i + 1)) | |
511 | |
512 origSeries = DoGet(_REMOTE, '/series')[0] | |
513 newSeries = DoPost(_REMOTE, '/series/%s/anonymize' % origSeries, | |
514 '{}', | |
515 'application/json')['ID'] | |
516 | |
517 self.assertEqual(origSeries, DoGet(_REMOTE, '/series/%s' % newSeries)['AnonymizedFrom']) | |
518 instances = DoGet(_REMOTE, '/series/%s' % newSeries)['Instances'] | |
519 self.assertEqual(4, len(instances)) | |
520 for i in instances: | |
521 j = DoGet(_REMOTE, '/instances/%s' % i)['AnonymizedFrom'] | |
522 self.assertEqual(newSeries, DoGet(_REMOTE, '/instances/%s' % i)['ParentSeries']) | |
523 self.assertEqual(origSeries, DoGet(_REMOTE, '/instances/%s' % j)['ParentSeries']) | |
524 | |
525 DoGet(_REMOTE, '/instances/%s/content/0008-1010' % j) | |
526 self.assertRaises(Exception, lambda: DoGet(_REMOTE, '/instances/%s/content/0008-1010' % i)) | |
527 | |
528 | |
529 def test_anonymize_study(self): | |
530 # Upload 4 images from the 2 series of the same study | |
531 for i in range(4): | |
532 UploadInstance(_REMOTE, 'Brainix/Flair/IM-0001-000%d.dcm' % (i + 1)) | |
533 UploadInstance(_REMOTE, 'Brainix/Epi/IM-0001-000%d.dcm' % (i + 1)) | |
534 | |
535 origStudy = DoGet(_REMOTE, '/studies')[0] | |
536 newStudy = DoPost(_REMOTE,'/studies/%s/anonymize' % origStudy, | |
537 '{"Replace":{"PatientName":"Jodogne"}}', | |
538 'application/json')['ID'] | |
539 | |
540 self.assertEqual(origStudy, DoGet(_REMOTE, '/studies/%s' % newStudy)['AnonymizedFrom']) | |
541 series = DoGet(_REMOTE, '/studies/%s' % newStudy)['Series'] | |
542 self.assertEqual(2, len(series)) | |
543 for s in series: | |
544 ss = DoGet(_REMOTE, '/series/%s' % s)['AnonymizedFrom'] | |
545 self.assertEqual(newStudy, DoGet(_REMOTE, '/series/%s' % s)['ParentStudy']) | |
546 self.assertEqual(origStudy, DoGet(_REMOTE, '/series/%s' % ss)['ParentStudy']) | |
547 | |
548 instances = DoGet(_REMOTE, '/series/%s' % s)['Instances'] | |
549 for i in instances: | |
550 j = DoGet(_REMOTE, '/instances/%s' % i)['AnonymizedFrom'] | |
551 self.assertEqual(s, DoGet(_REMOTE, '/instances/%s' % i)['ParentSeries']) | |
552 self.assertEqual(ss, DoGet(_REMOTE, '/instances/%s' % j)['ParentSeries']) | |
553 | |
554 self.assertEqual('Jodogne', DoGet(_REMOTE, '/instances/%s/content/0010-0010' % i).strip()) | |
555 self.assertNotEqual('Jodogne', DoGet(_REMOTE, '/instances/%s/content/0010-0010' % j).strip()) | |
11 | 556 |
557 | |
558 | |
559 def test_storescu(self): | |
560 # Check emptiness | |
561 e = DoGet(_REMOTE, '/exports') | |
562 self.assertEqual(0, len(e['Exports'])) | |
563 self.assertEqual(0, e['Last']) | |
564 self.assertTrue(e['Done']) | |
565 e = DoGet(_REMOTE, '/exports?last') | |
566 self.assertEqual(0, len(e['Exports'])) | |
567 self.assertEqual(0, e['Last']) | |
568 self.assertTrue(e['Done']) | |
569 | |
570 # Add 1 instance | |
571 i = UploadInstance(_REMOTE, 'DummyCT.dcm')['ID'] | |
572 self.assertEqual(0, len(DoGet(_LOCAL, '/patients'))) | |
573 | |
574 # Export the instance | |
575 j = DoPost(_REMOTE, '/modalities/orthanctest/store', str(i), 'text/plain') # instance | |
576 self.assertEqual(1, len(DoGet(_LOCAL, '/patients'))) | |
577 self.assertEqual(1, len(DoGet(_LOCAL, '/studies'))) | |
578 self.assertEqual(1, len(DoGet(_LOCAL, '/series'))) | |
579 self.assertEqual(1, len(DoGet(_LOCAL, '/instances'))) | |
580 | |
581 e = DoGet(_REMOTE, '/exports') | |
582 self.assertEqual(1, len(e['Exports'])) | |
583 self.assertTrue(e['Done']) | |
584 self.assertEqual(e['Exports'][-1]['Seq'], e['Last']) | |
585 e = DoGet(_REMOTE, '/exports?limit=1') | |
586 self.assertEqual(1, len(e['Exports'])) | |
587 self.assertTrue(e['Done']) | |
588 self.assertEqual(e['Exports'][-1]['Seq'], e['Last']) | |
589 e = DoGet(_REMOTE, '/exports?last') | |
590 self.assertEqual(1, len(e['Exports'])) | |
591 self.assertTrue(e['Done']) | |
592 self.assertEqual(e['Exports'][-1]['Seq'], e['Last']) | |
593 seqInstance = e['Last'] | |
594 | |
595 # Export the series | |
596 j = DoPost(_REMOTE, '/modalities/orthanctest/store', 'f2635388-f01d497a-15f7c06b-ad7dba06-c4c599fe', 'text/plain') | |
597 | |
598 e = DoGet(_REMOTE, '/exports') | |
599 self.assertEqual(2, len(e['Exports'])) | |
600 self.assertTrue(e['Done']) | |
601 self.assertEqual(e['Exports'][-1]['Seq'], e['Last']) | |
602 seqSeries = e['Last'] | |
603 self.assertNotEqual(seqInstance, seqSeries) | |
604 e = DoGet(_REMOTE, '/exports?limit=1&since=0') | |
605 self.assertEqual(1, len(e['Exports'])) | |
606 self.assertFalse(e['Done']) | |
607 self.assertEqual(e['Exports'][-1]['Seq'], seqInstance) | |
608 e = DoGet(_REMOTE, '/exports?limit=1&since=' + str(seqInstance)) | |
609 self.assertEqual(1, len(e['Exports'])) | |
610 self.assertTrue(e['Done']) | |
611 self.assertEqual(e['Exports'][-1]['Seq'], seqSeries) | |
612 e = DoGet(_REMOTE, '/exports?last') | |
613 self.assertEqual(1, len(e['Exports'])) | |
614 self.assertTrue(e['Done']) | |
615 self.assertEqual(e['Exports'][-1]['Seq'], seqSeries) | |
616 | |
617 # Export the study | |
618 j = DoPost(_REMOTE, '/modalities/orthanctest/store', 'b9c08539-26f93bde-c81ab0d7-bffaf2cb-a4d0bdd0', 'text/plain') | |
619 seqStudy = DoGet(_REMOTE, '/exports')['Last'] | |
620 | |
621 # Export the patient | |
622 j = DoPost(_REMOTE, '/modalities/orthanctest/store', '6816cb19-844d5aee-85245eba-28e841e6-2414fae2', 'text/plain') | |
623 self.assertEqual(1, len(DoGet(_LOCAL, '/patients'))) | |
624 self.assertEqual(1, len(DoGet(_LOCAL, '/studies'))) | |
625 self.assertEqual(1, len(DoGet(_LOCAL, '/series'))) | |
626 self.assertEqual(1, len(DoGet(_LOCAL, '/instances'))) | |
627 | |
628 e = DoGet(_REMOTE, '/exports') | |
629 self.assertEqual(4, len(e['Exports'])) | |
630 self.assertTrue(e['Done']) | |
631 self.assertEqual(e['Exports'][-1]['Seq'], e['Last']) | |
632 seqPatient = e['Last'] | |
633 self.assertNotEqual(seqInstance, seqSeries) | |
634 self.assertNotEqual(seqSeries, seqStudy) | |
635 self.assertNotEqual(seqStudy, seqPatient) | |
636 self.assertTrue(seqInstance < seqSeries) | |
637 self.assertTrue(seqSeries < seqStudy) | |
638 self.assertTrue(seqStudy < seqPatient) | |
639 e = DoGet(_REMOTE, '/exports?limit=1&since=0') | |
640 self.assertEqual(1, len(e['Exports'])) | |
641 self.assertFalse(e['Done']) | |
642 self.assertEqual(e['Exports'][-1]['Seq'], seqInstance) | |
643 e = DoGet(_REMOTE, '/exports?limit=1&since=' + str(seqInstance)) | |
644 self.assertEqual(1, len(e['Exports'])) | |
645 self.assertFalse(e['Done']) | |
646 self.assertEqual(e['Exports'][-1]['Seq'], seqSeries) | |
647 e = DoGet(_REMOTE, '/exports?limit=1&since=' + str(seqSeries)) | |
648 self.assertEqual(1, len(e['Exports'])) | |
649 self.assertFalse(e['Done']) | |
650 self.assertEqual(e['Exports'][-1]['Seq'], seqStudy) | |
651 e = DoGet(_REMOTE, '/exports?limit=1&since=' + str(seqStudy)) | |
652 self.assertEqual(1, len(e['Exports'])) | |
653 self.assertTrue(e['Done']) | |
654 self.assertEqual(e['Exports'][-1]['Seq'], seqPatient) | |
655 e = DoGet(_REMOTE, '/exports?last') | |
656 self.assertEqual(1, len(e['Exports'])) | |
657 self.assertTrue(e['Done']) | |
658 self.assertEqual(e['Exports'][-1]['Seq'], seqPatient) | |
659 | |
660 | |
661 # Check the content of the logged information | |
662 e = DoGet(_REMOTE, '/exports')['Exports'] | |
663 | |
664 if 'PatientID' in e[0]: | |
665 # Since Orthanc 0.8.6 | |
666 patient = 'PatientID' | |
667 study = 'StudyInstanceUID' | |
668 series = 'SeriesInstanceUID' | |
669 instance = 'SOPInstanceUID' | |
670 else: | |
671 # Up to Orthanc 0.8.5 | |
672 patient = 'PatientId' | |
673 study = 'StudyInstanceUid' | |
674 series = 'SeriesInstanceUid' | |
675 instance = 'SopInstanceUid' | |
676 | |
677 for k in range(4): | |
678 self.assertTrue('Date' in e[k]) | |
679 self.assertTrue('Seq' in e[k]) | |
680 self.assertEqual('orthanctest', e[k]['RemoteModality']) | |
681 | |
682 self.assertEqual(10, len(e[0])) | |
683 self.assertEqual('Instance', e[0]['ResourceType']) | |
684 self.assertEqual('66a662ce-7430e543-bad44d47-0dc5a943-ec7a538d', e[0]['ID']) | |
685 self.assertEqual('/instances/66a662ce-7430e543-bad44d47-0dc5a943-ec7a538d', e[0]['Path']) | |
686 self.assertEqual('1.2.840.113619.2.176.2025.1499492.7040.1171286242.109', e[0][instance]) | |
687 self.assertEqual('1.2.840.113619.2.176.2025.1499492.7391.1171285944.394', e[0][series]) | |
688 self.assertEqual('1.2.840.113619.2.176.2025.1499492.7391.1171285944.390', e[0][study]) | |
689 self.assertEqual('ozp00SjY2xG', e[0][patient]) | |
690 | |
691 self.assertEqual(9, len(e[1])) | |
692 self.assertEqual('Series', e[1]['ResourceType']) | |
693 self.assertEqual('f2635388-f01d497a-15f7c06b-ad7dba06-c4c599fe', e[1]['ID']) | |
694 self.assertEqual('/series/f2635388-f01d497a-15f7c06b-ad7dba06-c4c599fe', e[1]['Path']) | |
695 self.assertEqual('1.2.840.113619.2.176.2025.1499492.7391.1171285944.394', e[1][series]) | |
696 self.assertEqual('1.2.840.113619.2.176.2025.1499492.7391.1171285944.390', e[1][study]) | |
697 self.assertEqual('ozp00SjY2xG', e[1][patient]) | |
698 | |
699 self.assertEqual(8, len(e[2])) | |
700 self.assertEqual('Study', e[2]['ResourceType']) | |
701 self.assertEqual('b9c08539-26f93bde-c81ab0d7-bffaf2cb-a4d0bdd0', e[2]['ID']) | |
702 self.assertEqual('/studies/b9c08539-26f93bde-c81ab0d7-bffaf2cb-a4d0bdd0', e[2]['Path']) | |
703 self.assertEqual('1.2.840.113619.2.176.2025.1499492.7391.1171285944.390', e[2][study]) | |
704 self.assertEqual('ozp00SjY2xG', e[2][patient]) | |
705 | |
706 self.assertEqual(7, len(e[3])) | |
707 self.assertEqual('Patient', e[3]['ResourceType']) | |
708 self.assertEqual('6816cb19-844d5aee-85245eba-28e841e6-2414fae2', e[3]['ID']) | |
709 self.assertEqual('/patients/6816cb19-844d5aee-85245eba-28e841e6-2414fae2', e[3]['Path']) | |
710 self.assertEqual('ozp00SjY2xG', e[3][patient]) | |
711 | |
712 DropOrthanc(_REMOTE) | |
713 self.assertEqual(0, len(DoGet(_REMOTE, '/exports')['Exports'])) | |
714 | |
715 | |
716 def test_store_peer(self): | |
717 self.assertEqual(0, len(DoGet(_LOCAL, '/exports')['Exports'])) | |
718 self.assertEqual(0, len(DoGet(_REMOTE, '/exports')['Exports'])) | |
719 | |
720 i = UploadInstance(_REMOTE, 'DummyCT.dcm')['ID'] | |
721 self.assertEqual(0, len(DoGet(_LOCAL, '/patients'))) | |
722 self.assertEqual(1, len(DoGet(_REMOTE, '/patients'))) | |
723 | |
724 j = DoPost(_REMOTE, '/peers/peer/store', str(i), 'text/plain') | |
725 self.assertEqual(1, len(DoGet(_LOCAL, '/patients'))) | |
726 self.assertEqual(1, len(DoGet(_REMOTE, '/patients'))) | |
727 | |
728 self.assertEqual(1, len(DoGet(_REMOTE, '/exports')['Exports'])) | |
729 | |
730 DropOrthanc(_REMOTE) | |
731 self.assertEqual(0, len(DoGet(_REMOTE, '/exports')['Exports'])) | |
732 | |
733 | |
734 def test_bulk_storescu(self): | |
735 self.assertEqual(0, len(DoGet(_LOCAL, '/patients'))) | |
736 | |
737 a = UploadInstance(_REMOTE, 'Knee/T1/IM-0001-0001.dcm') | |
738 b = UploadInstance(_REMOTE, 'Knee/T2/IM-0001-0001.dcm') | |
739 | |
740 j = DoPost(_REMOTE, '/modalities/orthanctest/store', [ a['ID'], b['ID'] ], 'application/json') | |
741 self.assertEqual(2, len(DoGet(_LOCAL, '/instances'))) | |
742 | |
743 DropOrthanc(_LOCAL) | |
744 | |
745 # Send using patient's UUID | |
746 self.assertEqual(0, len(DoGet(_LOCAL, '/instances'))) | |
747 j = DoPost(_REMOTE, '/modalities/orthanctest/store', | |
748 [ 'ca29faea-b6a0e17f-067743a1-8b778011-a48b2a17' ], 'application/json') | |
749 self.assertEqual(2, len(DoGet(_LOCAL, '/instances'))) | |
750 | |
751 | |
752 def test_color(self): | |
753 i = UploadInstance(_REMOTE, 'ColorTestMalaterre.dcm')['ID'] | |
754 im = GetImage(_REMOTE, '/instances/%s/preview' % i) | |
755 self.assertEqual("RGB", im.mode) | |
756 self.assertEqual(41, im.size[0]) | |
757 self.assertEqual(41, im.size[1]) | |
758 | |
759 # http://effbot.org/zone/pil-comparing-images.htm | |
13 | 760 truth = Image.open(GetDatabasePath('ColorTestMalaterre.png')) |
11 | 761 self.assertTrue(ImageChops.difference(im, truth).getbbox() is None) |
762 | |
763 | |
12 | 764 def test_faking_ruby_put(self): |
765 UploadInstance(_REMOTE, 'Knee/T1/IM-0001-0001.dcm') | |
766 UploadInstance(_REMOTE, 'Brainix/Flair/IM-0001-0001.dcm') | |
767 self.assertEqual(2, len(DoGet(_REMOTE, '/patients'))) | |
768 a = DoGet(_REMOTE, '/patients')[0] | |
769 b = DoGet(_REMOTE, '/patients')[1] | |
770 self.assertEqual(0, DoGet(_REMOTE, '/patients/%s/protected' % a)) | |
771 DoGet(_REMOTE, '/patients/%s/protected' % a, data = { '_method' : 'PUT' }, body = '0') | |
772 self.assertEqual(0, DoGet(_REMOTE, '/patients/%s/protected' % a)) | |
773 DoGet(_REMOTE, '/patients/%s/protected' % a, data = { '_method' : 'PUT' }, body = '1') | |
774 self.assertEqual(1, DoGet(_REMOTE, '/patients/%s/protected' % a)) | |
775 DoGet(_REMOTE, '/patients/%s/protected' % a, data = { '_method' : 'PUT' }, body = '0') | |
776 self.assertEqual(0, DoGet(_REMOTE, '/patients/%s/protected' % a)) | |
777 | |
778 | |
779 def test_faking_ruby_delete(self): | |
780 UploadInstance(_REMOTE, 'Knee/T1/IM-0001-0001.dcm') | |
781 UploadInstance(_REMOTE, 'Brainix/Flair/IM-0001-0001.dcm') | |
782 self.assertEqual(2, len(DoGet(_REMOTE, '/patients'))) | |
783 a = DoGet(_REMOTE, '/patients')[0] | |
784 b = DoGet(_REMOTE, '/patients')[1] | |
785 DoGet(_REMOTE, '/patients/%s' % a, data = { '_method' : 'DELETE' }) | |
786 self.assertEqual(1, len(DoGet(_REMOTE, '/patients'))) | |
787 DoGet(_REMOTE, '/patients/%s' % b, data = { '_method' : 'DELETE' }) | |
788 self.assertEqual(0, len(DoGet(_REMOTE, '/patients'))) | |
789 | |
790 | |
791 def test_faking_google_put(self): | |
792 UploadInstance(_REMOTE, 'Knee/T1/IM-0001-0001.dcm') | |
793 UploadInstance(_REMOTE, 'Brainix/Flair/IM-0001-0001.dcm') | |
794 self.assertEqual(2, len(DoGet(_REMOTE, '/patients'))) | |
795 a = DoGet(_REMOTE, '/patients')[0] | |
796 b = DoGet(_REMOTE, '/patients')[1] | |
797 self.assertEqual(0, DoGet(_REMOTE, '/patients/%s/protected' % a)) | |
798 DoPost(_REMOTE, '/patients/%s/protected' % a, headers = { 'X-HTTP-Method-Override' : 'PUT' }, data = '0') | |
799 self.assertEqual(0, DoGet(_REMOTE, '/patients/%s/protected' % a)) | |
800 DoPost(_REMOTE, '/patients/%s/protected' % a, headers = { 'X-HTTP-Method-Override' : 'PUT' }, data = '1') | |
801 self.assertEqual(1, DoGet(_REMOTE, '/patients/%s/protected' % a)) | |
802 DoPost(_REMOTE, '/patients/%s/protected' % a, headers = { 'X-HTTP-Method-Override' : 'PUT' }, data = '0') | |
803 self.assertEqual(0, DoGet(_REMOTE, '/patients/%s/protected' % a)) | |
804 | |
805 | |
806 def test_faking_google_delete(self): | |
807 UploadInstance(_REMOTE, 'Knee/T1/IM-0001-0001.dcm') | |
808 UploadInstance(_REMOTE, 'Brainix/Flair/IM-0001-0001.dcm') | |
809 self.assertEqual(2, len(DoGet(_REMOTE, '/patients'))) | |
810 a = DoGet(_REMOTE, '/patients')[0] | |
811 b = DoGet(_REMOTE, '/patients')[1] | |
812 DoPost(_REMOTE, '/patients/%s' % a, headers = { 'X-HTTP-Method-Override' : 'DELETE' }) | |
813 self.assertEqual(1, len(DoGet(_REMOTE, '/patients'))) | |
814 DoPost(_REMOTE, '/patients/%s' % b, headers = { 'X-HTTP-Method-Override' : 'DELETE' }) | |
815 self.assertEqual(0, len(DoGet(_REMOTE, '/patients'))) | |
816 | |
817 | |
818 def test_lua(self): | |
819 self.assertEqual(42, DoPost(_REMOTE, '/tools/execute-script', 'print(42)')) | |
820 self.assertTrue(IsDefinedInLua(_REMOTE, 'PrintRecursive')) | |
821 self.assertFalse(IsDefinedInLua(_REMOTE, 'HelloWorld')) | |
822 | |
823 | |
824 def test_metadata(self): | |
825 UploadInstance(_REMOTE, 'Knee/T1/IM-0001-0001.dcm') | |
826 p = DoGet(_REMOTE, '/patients')[0] | |
827 i = DoGet(_REMOTE, '/instances')[0] | |
828 | |
829 m = DoGet(_REMOTE, '/patients/%s/metadata' % p) | |
830 self.assertEqual(1, len(m)) | |
831 self.assertEqual('LastUpdate', m[0]) | |
832 | |
833 m = DoGet(_REMOTE, '/instances/%s/metadata' % i) | |
834 self.assertEqual(3, len(m)) | |
835 self.assertTrue('IndexInSeries' in m) | |
836 self.assertTrue('ReceptionDate' in m) | |
837 self.assertTrue('RemoteAET' in m) | |
838 | |
839 # Play with custom metadata | |
840 DoPut(_REMOTE, '/patients/%s/metadata/5555' % p, 'coucou') | |
841 m = DoGet(_REMOTE, '/patients/%s/metadata' % p) | |
842 self.assertEqual(2, len(m)) | |
843 self.assertTrue('LastUpdate' in m) | |
844 self.assertTrue('5555' in m) | |
845 self.assertEqual('coucou', DoGet(_REMOTE, '/patients/%s/metadata/5555' % p)) | |
846 DoPut(_REMOTE, '/patients/%s/metadata/5555' % p, 'hello') | |
847 self.assertEqual('hello', DoGet(_REMOTE, '/patients/%s/metadata/5555' % p)) | |
848 DoDelete(_REMOTE, '/patients/%s/metadata/5555' % p) | |
849 m = DoGet(_REMOTE, '/patients/%s/metadata' % p) | |
850 self.assertEqual(1, len(m)) | |
851 self.assertTrue('LastUpdate' in m) | |
13 | 852 |
853 | |
854 def test_statistics(self): | |
855 # Upload 16 instances | |
856 for i in range(4): | |
857 UploadInstance(_REMOTE, 'Brainix/Flair/IM-0001-000%d.dcm' % (i + 1)) | |
858 UploadInstance(_REMOTE, 'Brainix/Epi/IM-0001-000%d.dcm' % (i + 1)) | |
859 UploadInstance(_REMOTE, 'Knee/T1/IM-0001-000%d.dcm' % (i + 1)) | |
860 UploadInstance(_REMOTE, 'Knee/T2/IM-0001-000%d.dcm' % (i + 1)) | |
861 | |
862 s = DoGet(_REMOTE, '/statistics') | |
863 self.assertEqual(16, s['CountInstances']) | |
864 self.assertEqual(2, s['CountPatients']) | |
865 self.assertEqual(2, s['CountStudies']) | |
866 self.assertEqual(4, s['CountSeries']) | |
867 d = int(s['TotalUncompressedSize']) | |
868 | |
869 e = 0 | |
870 for patient in DoGet(_REMOTE, '/patients'): | |
871 s = DoGet(_REMOTE, '/patients/%s/statistics' % patient) | |
872 self.assertEqual(8, s['CountInstances']) | |
873 self.assertEqual(1, s['CountStudies']) | |
874 self.assertEqual(2, s['CountSeries']) | |
875 e += int(s['UncompressedSize']) | |
876 | |
877 for study in DoGet(_REMOTE, '/studies'): | |
878 s = DoGet(_REMOTE, '/studies/%s/statistics' % study) | |
879 self.assertEqual(8, s['CountInstances']) | |
880 self.assertEqual(2, s['CountSeries']) | |
881 e += int(s['UncompressedSize']) | |
882 | |
883 for series in DoGet(_REMOTE, '/series'): | |
884 s = DoGet(_REMOTE, '/series/%s/statistics' % series) | |
885 self.assertEqual(4, s['CountInstances']) | |
886 e += int(s['UncompressedSize']) | |
887 | |
888 self.assertEqual(3 * d, e) | |
889 | |
890 | |
891 def test_custom_attachment(self): | |
892 UploadInstance(_REMOTE, 'Brainix/Flair/IM-0001-0001.dcm') | |
893 patient = DoGet(_REMOTE, '/patients')[0] | |
894 instance = DoGet(_REMOTE, '/instances')[0] | |
895 size = int(DoGet(_REMOTE, '/patients/%s/statistics' % patient)['DiskSize']) | |
896 self.assertEqual(size, int(DoGet(_REMOTE, '/statistics')['TotalDiskSize'])) | |
897 | |
898 self.assertEqual(0, len(DoGet(_REMOTE, '/patients/%s/attachments' % patient))) | |
899 self.assertEqual(2, len(DoGet(_REMOTE, '/instances/%s/attachments' % instance))) | |
900 self.assertTrue('dicom' in DoGet(_REMOTE, '/instances/%s/attachments' % instance)) | |
901 self.assertTrue('dicom-as-json' in DoGet(_REMOTE, '/instances/%s/attachments' % instance)) | |
902 | |
903 self.assertRaises(Exception, lambda: DoPut(_REMOTE, '/patients/%s/attachments/22' % patient, 'hello')) | |
904 hello = 'hellohellohellohellohellohellohellohellohello' | |
905 DoPut(_REMOTE, '/patients/%s/attachments/1025' % patient, hello) | |
906 self.assertEqual(int(DoGet(_REMOTE, '/patients/%s/statistics' % patient)['DiskSize']), | |
907 int(DoGet(_REMOTE, '/statistics')['TotalDiskSize'])) | |
908 self.assertEqual(int(DoGet(_REMOTE, '/patients/%s/statistics' % patient)['DiskSize']), | |
909 size + int(DoGet(_REMOTE, '/patients/%s/attachments/1025/compressed-size' % patient))) | |
910 | |
911 DoPut(_REMOTE, '/patients/%s/attachments/1026' % patient, 'world') | |
912 self.assertEqual(int(DoGet(_REMOTE, '/patients/%s/statistics' % patient)['DiskSize']), | |
913 int(DoGet(_REMOTE, '/statistics')['TotalDiskSize'])) | |
914 self.assertEqual(int(DoGet(_REMOTE, '/patients/%s/statistics' % patient)['DiskSize']), | |
915 size + | |
916 int(DoGet(_REMOTE, '/patients/%s/attachments/1025/compressed-size' % patient)) + | |
917 int(DoGet(_REMOTE, '/patients/%s/attachments/1026/compressed-size' % patient))) | |
918 | |
919 self.assertEqual(2, len(DoGet(_REMOTE, '/patients/%s/attachments' % patient))) | |
920 self.assertEqual(hello, DoGet(_REMOTE, '/patients/%s/attachments/1025/data' % patient)) | |
921 self.assertEqual('world', DoGet(_REMOTE, '/patients/%s/attachments/1026/data' % patient)) | |
922 DoPost(_REMOTE, '/patients/%s/attachments/1025/verify-md5' % patient) | |
923 DoPost(_REMOTE, '/patients/%s/attachments/1026/verify-md5' % patient) | |
924 DoPut(_REMOTE, '/patients/%s/attachments/1026' % patient, 'world2') | |
925 self.assertEqual('world2', DoGet(_REMOTE, '/patients/%s/attachments/1026/data' % patient)) | |
926 | |
927 self.assertRaises(Exception, lambda: DoDelete(_REMOTE, '/instances/%s/attachments/dicom' % instance)) | |
928 DoDelete(_REMOTE, '/patients/%s/attachments/1025' % patient) | |
929 self.assertEqual(int(DoGet(_REMOTE, '/patients/%s/statistics' % patient)['DiskSize']), | |
930 int(DoGet(_REMOTE, '/statistics')['TotalDiskSize'])) | |
931 self.assertEqual(int(DoGet(_REMOTE, '/patients/%s/statistics' % patient)['DiskSize']), | |
932 size + int(DoGet(_REMOTE, '/patients/%s/attachments/1026/compressed-size' % patient))) | |
933 | |
934 self.assertEqual(1, len(DoGet(_REMOTE, '/patients/%s/attachments' % patient))) | |
935 DoDelete(_REMOTE, '/patients/%s/attachments/1026' % patient) | |
936 self.assertEqual(0, len(DoGet(_REMOTE, '/patients/%s/attachments' % patient))) | |
937 | |
938 self.assertEqual(int(DoGet(_REMOTE, '/patients/%s/statistics' % patient)['DiskSize']), size) | |
939 self.assertEqual(size, int(DoGet(_REMOTE, '/statistics')['TotalDiskSize'])) | |
940 | |
941 | |
942 def test_incoming_storescu(self): | |
943 self.assertEqual(0, len(DoGet(_REMOTE, '/patients'))) | |
944 subprocess.check_call([ 'storescu', _REMOTE['Server'], str(_REMOTE['DicomPort']), | |
945 GetDatabasePath('ColorTestImageJ.dcm') ]) | |
946 self.assertEqual(1, len(DoGet(_REMOTE, '/patients'))) | |
947 | |
948 | |
949 def test_incoming_findscu(self): | |
950 def CallFindScu(args): | |
951 p = subprocess.Popen([ 'findscu', '-P', '-aec', _REMOTE['DicomAet'], '-aet', _LOCAL['DicomAet'], | |
952 _REMOTE['Server'], str(_REMOTE['DicomPort']) ] + args, | |
953 stderr=subprocess.PIPE) | |
954 return p.communicate()[1] | |
955 | |
956 UploadInstance(_REMOTE, 'Multiframe.dcm') | |
957 UploadInstance(_REMOTE, 'ColorTestImageJ.dcm') | |
958 | |
959 i = CallFindScu([ '-k', '0008,0052=PATIENT', '-k', '0010,0010' ]) | |
960 patientNames = re.findall('\(0010,0010\).*?\[(.*?)\]', i) | |
961 self.assertEqual(2, len(patientNames)) | |
962 self.assertTrue('Test Patient BG ' in patientNames) | |
963 self.assertTrue('Anonymized' in patientNames) | |
964 | |
965 i = CallFindScu([ '-k', '0008,0052=SERIES', '-k', '0008,0021' ]) | |
966 series = re.findall('\(0008,0021\).*?\[\s*(.*?)\s*\]', i) | |
967 self.assertEqual(2, len(series)) | |
968 self.assertTrue('20070208' in series) | |
969 self.assertTrue('19980312' in series) | |
970 | |
971 i = CallFindScu([ '-k', '0008,0052=SERIES', '-k', 'PatientName=Anonymized' ]) | |
972 series = re.findall('\(0010,0010\).*?\[\s*(.*?)\s*\]', i) | |
973 self.assertEqual(1, len(series)) | |
974 | |
975 # Test the "CaseSentitivePN" flag (false by default) | |
976 i = CallFindScu([ '-k', '0008,0052=SERIES', '-k', 'PatientName=anonymized' ]) | |
977 series = re.findall('\(0010,0010\).*?\[\s*(.*?)\s*\]', i) | |
978 self.assertEqual(1, len(series)) | |
979 | |
980 | |
981 @unittest.skip("This test fails, to fix") | |
982 def test_incoming_movescu(self): | |
983 def CallMoveScu(args): | |
984 subprocess.check_call([ 'movescu', | |
985 '--move', _LOCAL['DicomAet'], # Target AET (i.e. storescp) | |
986 '--call', _REMOTE['DicomAet'], # Called AET (i.e. Orthanc) | |
987 '--aetitle', _LOCAL['DicomAet'], # Calling AET (i.e. storescp) | |
988 _REMOTE['Server'], str(_REMOTE['DicomPort']) ] + args, | |
989 stderr=subprocess.PIPE) | |
990 | |
991 UploadInstance(_REMOTE, 'Multiframe.dcm') | |
992 | |
993 self.assertEqual(0, len(DoGet(_LOCAL, '/patients'))) | |
994 #CallMoveScu([ '--patient', '-k', '0008,0052=PATIENT', '-k', 'PatientID=none' ]) | |
995 self.assertEqual(0, len(DoGet(_LOCAL, '/patients'))) | |
996 CallMoveScu([ '--patient', '-k', '0008,0052=PATIENT', '-k', 'PatientID=12345678' ]) | |
997 self.assertEqual(1, len(DoGet(_LOCAL, '/patients'))) | |
998 | |
999 | |
1000 def test_findscu(self): | |
1001 i = UploadInstance(_REMOTE, 'DummyCT.dcm')['ID'] | |
1002 j = UploadInstance(_REMOTE, 'Issue22.dcm')['ID'] | |
1003 k = UploadInstance(_REMOTE, 'ColorTestImageJ.dcm')['ID'] | |
1004 DoPost(_REMOTE, '/modalities/orthanctest/store', str(i), 'text/plain') | |
1005 | |
1006 # Test the "find-patient" level | |
1007 p = DoPost(_REMOTE, '/modalities/orthanctest/find-patient', { }) | |
1008 self.assertEqual(1, len(p)) | |
1009 self.assertEqual('ozp00SjY2xG', p[0]['PatientID']) | |
1010 | |
1011 # Test wildcards constraints. The "LO" value representation | |
1012 # for PatientID is always case-sensitive, but the "PN" for | |
1013 # PatientName might depend on the implementation: | |
1014 # "GenerateConfigurationForTests.py" will force it to be case | |
1015 # insensitive (which was the default until Orthanc 0.8.6). | |
1016 p = DoPost(_REMOTE, '/modalities/orthanctest/find-patient', { 'PatientName' : 'K*' }) | |
1017 self.assertEqual(1, len(p)) | |
1018 | |
1019 p = DoPost(_REMOTE, '/modalities/orthanctest/find-patient', { 'PatientName' : 'k*' }) | |
1020 self.assertEqual(1, len(p)) | |
1021 | |
1022 p = DoPost(_REMOTE, '/modalities/orthanctest/find-patient', { 'PatientID' : 'ozp*' }) | |
1023 self.assertEqual(1, len(p)) | |
1024 | |
1025 p = DoPost(_REMOTE, '/modalities/orthanctest/find-patient', { 'PatientID' : 'o?p*' }) | |
1026 self.assertEqual(1, len(p)) | |
1027 | |
1028 p = DoPost(_REMOTE, '/modalities/orthanctest/find-patient', { 'PatientID' : '0?q*' }) | |
1029 self.assertEqual(0, len(p)) | |
1030 | |
1031 p = DoPost(_REMOTE, '/modalities/orthanctest/find-patient', { 'PatientName' : 'B*' }) | |
1032 self.assertEqual(0, len(p)) | |
1033 | |
1034 p = DoPost(_REMOTE, '/modalities/orthanctest/find-patient', { 'PatientName' : 'b*' }) | |
1035 self.assertEqual(0, len(p)) | |
1036 | |
1037 DoPost(_REMOTE, '/modalities/orthanctest/store', str(j), 'text/plain') | |
1038 DoPost(_REMOTE, '/modalities/orthanctest/store', str(k), 'text/plain') | |
1039 DoPost(_REMOTE, '/modalities/orthanctest/find-patient', { }) | |
1040 self.assertEqual(3, len(DoPost(_REMOTE, '/modalities/orthanctest/find-patient', { }))) | |
1041 | |
1042 p = DoPost(_REMOTE, '/modalities/orthanctest/find-patient', { 'PatientName' : 'A*' }) | |
1043 self.assertEqual(2, len(p)) | |
1044 | |
1045 # Test the "find-study" level. This is the instance "ColorTestImageJ.dcm" | |
1046 s = DoPost(_REMOTE, '/modalities/orthanctest/find-study', { 'PatientID' : 'B9uTHKOZ' }) | |
1047 self.assertEqual(1, len(s)) | |
1048 self.assertEqual('20070208', s[0]['StudyDate']) | |
1049 | |
1050 # Test range searches | |
1051 t = DoPost(_REMOTE, '/modalities/orthanctest/find-study', { 'PatientID' : 'B9uTHKOZ', | |
1052 'StudyDate' : '-20070101' }) | |
1053 self.assertEqual(0, len(t)) | |
1054 | |
1055 t = DoPost(_REMOTE, '/modalities/orthanctest/find-study', { 'PatientID' : 'B9uTHKOZ', | |
1056 'StudyDate' : '20090101-' }) | |
1057 self.assertEqual(0, len(t)) | |
1058 | |
1059 t = DoPost(_REMOTE, '/modalities/orthanctest/find-study', { 'PatientID' : 'B9uTHKOZ', | |
1060 'StudyDate' : '20070101-' }) | |
1061 self.assertEqual(1, len(t)) | |
1062 | |
1063 t = DoPost(_REMOTE, '/modalities/orthanctest/find-study', { 'PatientID' : 'B9uTHKOZ', | |
1064 'StudyDate' : '-20090101' }) | |
1065 self.assertEqual(1, len(t)) | |
1066 | |
1067 t = DoPost(_REMOTE, '/modalities/orthanctest/find-study', { 'PatientID' : 'B9uTHKOZ', | |
1068 'StudyDate' : '20070207-20070207' }) | |
1069 self.assertEqual(0, len(t)) | |
1070 | |
1071 t = DoPost(_REMOTE, '/modalities/orthanctest/find-study', { 'PatientID' : 'B9uTHKOZ', | |
1072 'StudyDate' : '20070208-20070208' }) | |
1073 self.assertEqual(1, len(t)) | |
1074 | |
1075 t = DoPost(_REMOTE, '/modalities/orthanctest/find-study', { 'PatientID' : 'B9uTHKOZ', | |
1076 'StudyDate' : '20070209-20070209' }) | |
1077 self.assertEqual(0, len(t)) | |
1078 | |
1079 # Test the ModalitiesInStudy tag | |
1080 t = DoPost(_REMOTE, '/modalities/orthanctest/find-study', { | |
1081 'PatientID' : 'B9uTHKOZ', | |
1082 'ModalitiesInStudy' : 'US' }) | |
1083 self.assertEqual(0, len(t)) | |
1084 | |
1085 t = DoPost(_REMOTE, '/modalities/orthanctest/find-study', { | |
1086 'PatientID' : 'B9uTHKOZ', | |
1087 'ModalitiesInStudy' : 'CT' }) | |
1088 self.assertEqual(1, len(t)) | |
1089 | |
1090 t = DoPost(_REMOTE, '/modalities/orthanctest/find-study', { | |
1091 'PatientID' : 'B9uTHKOZ', | |
1092 'ModalitiesInStudy' : 'US\\CT' }) | |
1093 self.assertEqual(1, len(t)) | |
1094 | |
1095 # Test the "find-series" level | |
1096 t = DoPost(_REMOTE, '/modalities/orthanctest/find-series', { | |
1097 'PatientID' : 'B9uTHKOZ', | |
1098 'StudyInstanceUID' : s[0]['StudyInstanceUID'] }) | |
1099 self.assertEqual(1, len(t)) | |
1100 | |
1101 # Test "\" separator | |
1102 t = DoPost(_REMOTE, '/modalities/orthanctest/find-series', { | |
1103 'PatientID' : 'B9uTHKOZ', | |
1104 'StudyInstanceUID' : s[0]['StudyInstanceUID'], | |
1105 'Modality' : 'MR\\CT\\US' }) | |
1106 self.assertEqual(1, len(t)) | |
1107 | |
1108 t = DoPost(_REMOTE, '/modalities/orthanctest/find-series', { | |
1109 'PatientID' : 'B9uTHKOZ', | |
1110 'StudyInstanceUID' : s[0]['StudyInstanceUID'], | |
1111 'Modality' : 'MR\\US' }) | |
1112 self.assertEqual(0, len(t)) | |
1113 | |
1114 | |
1115 def test_update_modalities(self): | |
1116 try: | |
1117 DoDelete(_REMOTE, '/modalities/toto') | |
1118 except: | |
1119 pass | |
1120 try: | |
1121 DoDelete(_REMOTE, '/modalities/tata') | |
1122 except: | |
1123 pass | |
1124 self.assertRaises(Exception, lambda: DoGet(_REMOTE, '/modalities/toto')) | |
1125 DoPut(_REMOTE, '/modalities/toto', [ "STORESCP", "localhost", 2000 ]) | |
1126 DoPut(_REMOTE, '/modalities/tata', [ "STORESCP", "localhost", 2000, 'MedInria' ]) | |
1127 self.assertRaises(Exception, lambda: DoPut(_REMOTE, '/modalities/toto', [ "STORESCP", "localhost", 2000, 'MedInriaaa' ])) | |
1128 self.assertTrue('store' in DoGet(_REMOTE, '/modalities/toto')) | |
1129 self.assertTrue('store' in DoGet(_REMOTE, '/modalities/tata')) | |
1130 DoDelete(_REMOTE, '/modalities/toto') | |
1131 DoDelete(_REMOTE, '/modalities/tata') | |
1132 self.assertRaises(Exception, lambda: DoGet(_REMOTE, '/modalities/toto')) | |
1133 self.assertRaises(Exception, lambda: DoGet(_REMOTE, '/modalities/tata')) | |
1134 | |
1135 | |
1136 def test_update_peers(self): | |
1137 # curl -X PUT http://localhost:8042/peers/toto -d '["http://localhost:8042/"]' -v | |
1138 try: | |
1139 DoDelete(_REMOTE, '/peers/toto') | |
1140 except: | |
1141 pass | |
1142 try: | |
1143 DoDelete(_REMOTE, '/peers/tata') | |
1144 except: | |
1145 pass | |
1146 self.assertRaises(Exception, lambda: DoGet(_REMOTE, '/peers/toto')) | |
1147 DoPut(_REMOTE, '/peers/toto', [ 'http://localhost:8042/' ]) | |
1148 DoPut(_REMOTE, '/peers/tata', [ 'http://localhost:8042/', 'user', 'pass' ]) | |
1149 self.assertRaises(Exception, lambda: DoPut(_REMOTE, '/peers/toto', [ 'http://localhost:8042/', 'a' ])) | |
1150 self.assertRaises(Exception, lambda: DoPut(_REMOTE, '/peers/toto', [ 'http://localhost:8042/', 'a', 'b', 'c' ])) | |
1151 self.assertTrue('store' in DoGet(_REMOTE, '/peers/toto')) | |
1152 self.assertTrue('store' in DoGet(_REMOTE, '/peers/tata')) | |
1153 DoDelete(_REMOTE, '/peers/toto') | |
1154 DoDelete(_REMOTE, '/peers/tata') | |
1155 self.assertRaises(Exception, lambda: DoGet(_REMOTE, '/peers/toto')) | |
1156 self.assertRaises(Exception, lambda: DoGet(_REMOTE, '/peers/tata')) | |
1157 | |
1158 | |
1159 def test_mesterhazy_modification(self): | |
1160 # When I modify a series ( eg. curl | |
1161 # http://localhost:8042/series/uidhere/modify -X POST -d | |
1162 # '{"Replace":{"SeriesDate":"19990101"}}' ) the modified | |
1163 # series is added to a new Study, instead of the existing | |
1164 # Study. Fixed in Orthanc 0.7.5 | |
1165 | |
1166 u = UploadInstance(_REMOTE, 'DummyCT.dcm') | |
1167 study = 'b9c08539-26f93bde-c81ab0d7-bffaf2cb-a4d0bdd0' | |
1168 series = 'f2635388-f01d497a-15f7c06b-ad7dba06-c4c599fe' | |
1169 | |
1170 modified = DoPost(_REMOTE, '/series/%s/modify' % series, | |
1171 json.dumps({ "Replace" : { "SeriesDate" : "19990101" }})) | |
1172 | |
1173 self.assertEqual(study, DoGet(_REMOTE, '/series/%s' % modified['ID']) ['ParentStudy']) | |
1174 | |
1175 | |
1176 def test_create(self): | |
1177 i = DoPost(_REMOTE, '/tools/create-dicom', | |
1178 json.dumps({ | |
1179 'PatientName' : 'Jodogne', | |
1180 'Modality' : 'CT', | |
1181 'PixelData' : 'data:image/png;base64,iVBORw0KGgoAAAANSUhEUgAAAAUAAAAFCAYAAACNbyblAAAAHElEQVQI12P4//8/w38GIAXDIBKE0DHxgljNBAAO9TXL0Y4OHwAAAABJRU5ErkJggg==' # red dot in RGBA | |
1182 })) | |
1183 | |
1184 self.assertEqual('Jodogne', DoGet(_REMOTE, '/instances/%s/content/PatientName' % i['ID']).strip()) | |
1185 self.assertEqual('CT', DoGet(_REMOTE, '/instances/%s/content/Modality' % i['ID']).strip()) | |
1186 | |
1187 png = GetImage(_REMOTE, '/instances/%s/preview' % i['ID']) | |
1188 self.assertEqual((5, 5), png.size) | |
1189 | |
1190 | |
1191 def test_pilates(self): | |
1192 # "SCU failed error when accessing orthanc with osirix" by | |
1193 # Pilates Agentur (Mar 10, 2014 at 9:33 PM) | |
1194 i = UploadInstance(_REMOTE, 'PilatesArgenturGEUltrasoundOsiriX.dcm')['ID'] | |
1195 self.assertEqual(0, len(DoGet(_LOCAL, '/patients'))) | |
1196 j = DoPost(_REMOTE, '/modalities/orthanctest/store', str(i), 'text/plain') | |
1197 self.assertEqual(1, len(DoGet(_LOCAL, '/patients'))) | |
1198 | |
1199 | |
1200 def test_shared_tags(self): | |
1201 a = UploadInstance(_REMOTE, 'Knee/T1/IM-0001-0001.dcm')['ID'] | |
1202 b = UploadInstance(_REMOTE, 'Knee/T1/IM-0001-0002.dcm')['ID'] | |
1203 p = DoGet(_REMOTE, '/patients')[0] | |
1204 | |
1205 self.assertTrue('0010,0010' in DoGet(_REMOTE, '/patients/%s/shared-tags' % p)) | |
1206 self.assertTrue('PatientName' in DoGet(_REMOTE, '/patients/%s/shared-tags?simplify' % p)) | |
1207 self.assertTrue('0008,1030' in DoGet(_REMOTE, '/patients/%s/shared-tags' % p)) | |
1208 self.assertTrue('StudyDescription' in DoGet(_REMOTE, '/patients/%s/shared-tags?simplify' % p)) | |
1209 self.assertTrue('0008,103e' in DoGet(_REMOTE, '/patients/%s/shared-tags' % p)) | |
1210 self.assertTrue('SeriesDescription' in DoGet(_REMOTE, '/patients/%s/shared-tags?simplify' % p)) | |
1211 self.assertFalse('0008,0018' in DoGet(_REMOTE, '/patients/%s/shared-tags' % p)) | |
1212 self.assertFalse('SOPInstanceUID' in DoGet(_REMOTE, '/patients/%s/shared-tags?simplify' % p)) | |
1213 | |
1214 self.assertTrue('0008,0018' in DoGet(_REMOTE, '/instances/%s/tags' % a)) | |
1215 self.assertTrue('SOPInstanceUID' in DoGet(_REMOTE, '/instances/%s/tags?simplify' % a)) | |
1216 | |
1217 | |
1218 def test_modules(self): | |
1219 a = UploadInstance(_REMOTE, 'Knee/T1/IM-0001-0001.dcm')['ID'] | |
1220 p = DoGet(_REMOTE, '/patients')[0] | |
1221 s = DoGet(_REMOTE, '/studies')[0] | |
1222 t = DoGet(_REMOTE, '/series')[0] | |
1223 | |
1224 self.assertTrue('0010,0010' in DoGet(_REMOTE, '/patients/%s/module' % p)) | |
1225 self.assertTrue('PatientName' in DoGet(_REMOTE, '/patients/%s/module?simplify' % p)) | |
1226 self.assertTrue('0010,0010' in DoGet(_REMOTE, '/studies/%s/module-patient' % p)) | |
1227 self.assertTrue('PatientName' in DoGet(_REMOTE, '/studies/%s/module-patient?simplify' % p)) | |
1228 self.assertTrue('0008,1030' in DoGet(_REMOTE, '/studies/%s/module' % s)) | |
1229 self.assertTrue('StudyDescription' in DoGet(_REMOTE, '/studies/%s/module?simplify' % s)) | |
1230 self.assertTrue('0008,103e' in DoGet(_REMOTE, '/series/%s/module' % p)) | |
1231 self.assertTrue('SeriesDescription' in DoGet(_REMOTE, '/series/%s/module?simplify' % p)) | |
1232 self.assertTrue('0008,0018' in DoGet(_REMOTE, '/instances/%s/module' % a)) | |
1233 self.assertTrue('SOPInstanceUID' in DoGet(_REMOTE, '/instances/%s/module?simplify' % a)) | |
1234 | |
1235 | |
1236 def test_auto_directory(self): | |
1237 a = UploadInstance(_REMOTE, 'Knee/T1/IM-0001-0001.dcm')['ID'] | |
1238 self.assertTrue('now' in DoGet(_REMOTE, '/tools')) | |
1239 self.assertTrue('dicom-conformance' in DoGet(_REMOTE, '/tools')) | |
1240 self.assertTrue(len(DoGet(_REMOTE, '/tools/dicom-conformance')) > 1000) | |
1241 self.assertTrue('orthanctest' in DoGet(_REMOTE, '/modalities')) | |
1242 self.assertTrue('echo' in DoGet(_REMOTE, '/modalities/orthanctest')) | |
1243 self.assertTrue('find' in DoGet(_REMOTE, '/modalities/orthanctest')) | |
1244 self.assertTrue('find-instance' in DoGet(_REMOTE, '/modalities/orthanctest')) | |
1245 self.assertTrue('find-patient' in DoGet(_REMOTE, '/modalities/orthanctest')) | |
1246 self.assertTrue('find-series' in DoGet(_REMOTE, '/modalities/orthanctest')) | |
1247 self.assertTrue('find-study' in DoGet(_REMOTE, '/modalities/orthanctest')) | |
1248 self.assertTrue('store' in DoGet(_REMOTE, '/modalities/orthanctest')) | |
1249 self.assertTrue('store' in DoGet(_REMOTE, '/peers/peer')) | |
1250 self.assertTrue('matlab' in DoGet(_REMOTE, '/instances/%s/frames/0' % a)) | |
1251 self.assertRaises(Exception, lambda: DoGet(_REMOTE, '/tools/nope')) | |
1252 | |
1253 | |
1254 def test_echo(self): | |
1255 DoPost(_REMOTE, '/modalities/orthanctest/echo') | |
1256 | |
1257 | |
1258 def test_xml(self): | |
1259 json = DoGet(_REMOTE, '/tools', headers = { 'accept' : 'application/json' }) | |
1260 xml = minidom.parseString(DoGet(_REMOTE, '/tools', headers = { 'accept' : 'application/xml' })) | |
1261 items = xml.getElementsByTagName('root')[0].getElementsByTagName('item') | |
1262 self.assertEqual(len(items), len(json)) | |
1263 | |
1264 self.assertTrue('dicom-conformance' in json) | |
1265 | |
1266 ok = False | |
1267 for i in items: | |
1268 if i.childNodes[0].data == 'dicom-conformance': | |
1269 ok = True | |
1270 self.assertTrue(ok) | |
1271 | |
1272 | |
1273 def test_issue_16(self): | |
1274 i = UploadInstance(_REMOTE, 'Issue16.dcm')['ID'] | |
1275 t = DoGet(_REMOTE, '/instances/%s/tags?simplify' % i)['FrameIncrementPointer'] | |
1276 self.assertEqual('0018,1063', t) | |
1277 | |
1278 | |
1279 def test_issue_22(self): | |
1280 s = UploadInstance(_REMOTE, 'Issue22.dcm')['ID'] | |
1281 a = [ | |
1282 "f804691f62197040438f4627c6b994f1", # Frame 0 | |
1283 "c69eee9a51eea3e8611e82e578897254", | |
1284 "315666be83e2d0111c77bc0996d84901", | |
1285 "3e27aa959d911172c48a1436443c72b1", | |
1286 "958642c9e7e9d232d3869faff546058c", | |
1287 "5e7ea8e3e4230cae707d143481355c59", | |
1288 "eda37f83558d858a596175aed8b2ad47", | |
1289 "486713bd2895c4ecbe0e97715ac7f80a", | |
1290 "091ef729eb169e67da8a0faa9631f9a8", | |
1291 "5aa2b8c7ffe0a483efaa8e12417686ca", | |
1292 "e2f39e85896fe58876654b94cd0b5013", | |
1293 "6fd2129e4950abbe1be053bc814d5da8", | |
1294 "c3331a8ba7a757f3d423735ab7fa81f9", | |
1295 "746f808582156734dd6b6fdfd3a0b72c", | |
1296 "8075ea2b227a70c60ea6b7b75a6bb190", | |
1297 "806b8b3e300c615099c11a5ec23465aa", | |
1298 "7c836aa298ba6eef96434579af631a11", | |
1299 "a0357dc9f4f72d73a885c33d7c287446", | |
1300 "f25ba3be1cc7d7fad95706adc199ea7d", | |
1301 "8b114c526b8cbed6cad8a3248b7b480c", | |
1302 "44e6670f127e612a2b4aa60a0d207698", | |
1303 "b8945f90fe02facf2ace24ca1ecbe0a5", | |
1304 "95c796c2fa8f59018b15cf2987b1f79b", | |
1305 "ce0a51ab30224205b44920221dc27351", # Frame 23 | |
1306 ] | |
1307 | |
1308 self.assertEqual(24, len(DoGet(_REMOTE, '/instances/%s/frames' % s))) | |
1309 self.assertRaises(Exception, lambda: DoGet(_REMOTE, '/instances/%s/frames/24/preview' % s)) | |
1310 | |
1311 for i in range(len(a)): | |
1312 self.assertEqual(a[i], ComputeMD5(DoGet(_REMOTE, '/instances/%s/frames/%d/preview' % (s, i)))) | |
1313 | |
1314 | |
1315 def test_issue_19(self): | |
1316 # This is an image with "YBR_FULL" photometric interpretation | |
1317 # gdcmconv -i /home/jodogne/DICOM/GdcmDatabase/US_DataSet/HDI5000_US/3EAF5E01 -w -o Issue19.dcm | |
1318 | |
1319 a = UploadInstance(_REMOTE, 'Issue19.dcm')['ID'] | |
1320 i = DoGet(_REMOTE, '/instances/941ad3c8-05d05b88-560459f9-0eae0e20-6cddd533/preview') | |
1321 | |
1322 # eb5d156c3594497f589158a6c6f3ca51 <=> Unsupported.png | |
1323 self.assertEqual('eb5d156c3594497f589158a6c6f3ca51', ComputeMD5(i)) | |
1324 | |
1325 | |
1326 def test_issue_37(self): | |
1327 # Same test for issues 35 and 37. Fixed in Orthanc 0.9.1 | |
1328 u = UploadInstance(_REMOTE, 'Beaufix/IM-0001-0001.dcm')['ID'] | |
1329 | |
1330 a = DoPost(_REMOTE, '/tools/find', { 'Level' : 'Series', | |
1331 'CaseSensitive' : True, | |
1332 'Query' : { 'StationName' : 'SMR4-MP3' }}) | |
1333 self.assertEqual(1, len(a)) | |
14 | 1334 |
1335 | |
1336 def test_rest_find(self): | |
1337 # Upload 8 instances | |
1338 for i in range(2): | |
1339 UploadInstance(_REMOTE, 'Brainix/Flair/IM-0001-000%d.dcm' % (i + 1)) | |
1340 UploadInstance(_REMOTE, 'Brainix/Epi/IM-0001-000%d.dcm' % (i + 1)) | |
1341 UploadInstance(_REMOTE, 'Knee/T1/IM-0001-000%d.dcm' % (i + 1)) | |
1342 UploadInstance(_REMOTE, 'Knee/T2/IM-0001-000%d.dcm' % (i + 1)) | |
1343 | |
1344 a = DoPost(_REMOTE, '/tools/find', { 'Level' : 'Patient', | |
1345 'CaseSensitive' : False, | |
1346 'Query' : { 'PatientName' : '*n*' }}) | |
1347 self.assertEqual(2, len(a)) | |
1348 | |
1349 a = DoPost(_REMOTE, '/tools/find', { 'Level' : 'Patient', | |
1350 'CaseSensitive' : True, | |
1351 'Query' : { 'PatientName' : '*n*' }}) | |
1352 self.assertEqual(0, len(a)) | |
1353 | |
1354 a = DoPost(_REMOTE, '/tools/find', { 'Expand' : True, | |
1355 'Level' : 'Patient', | |
1356 'CaseSensitive' : False, | |
1357 'Query' : { 'PatientName' : '*ne*' }}) | |
1358 self.assertEqual(1, len(a)) | |
1359 self.assertEqual('20080822', a[0]['MainDicomTags']['PatientBirthDate']) | |
1360 | |
1361 a = DoPost(_REMOTE, '/tools/find', { 'Level' : 'Patient', | |
1362 'CaseSensitive' : True, | |
1363 'Query' : { 'PatientName' : '*ne*' }}) | |
1364 self.assertEqual(0, len(a)) | |
1365 | |
1366 a = DoPost(_REMOTE, '/tools/find', { 'Level' : 'Study', | |
1367 'CaseSensitive' : True, | |
1368 'Query' : { 'PatientName' : '*NE*' }}) | |
1369 self.assertEqual(1, len(a)) | |
1370 | |
1371 a = DoPost(_REMOTE, '/tools/find', { 'Level' : 'Series', | |
1372 'CaseSensitive' : True, | |
1373 'Query' : { 'PatientName' : '*NE*' }}) | |
1374 self.assertEqual(2, len(a)) | |
1375 | |
1376 a = DoPost(_REMOTE, '/tools/find', { 'Level' : 'Instance', | |
1377 'CaseSensitive' : True, | |
1378 'Query' : { 'PatientName' : '*NE*' }}) | |
1379 self.assertEqual(4, len(a)) | |
1380 | |
1381 a = DoPost(_REMOTE, '/tools/find', { 'Level' : 'Patient', 'Query' : { }}) | |
1382 self.assertEqual(2, len(a)) | |
1383 | |
1384 a = DoPost(_REMOTE, '/tools/find', { 'Level' : 'Study', 'Query' : { }}) | |
1385 self.assertEqual(2, len(a)) | |
1386 | |
1387 a = DoPost(_REMOTE, '/tools/find', { 'Level' : 'Series', 'Query' : { }}) | |
1388 self.assertEqual(4, len(a)) | |
1389 | |
1390 a = DoPost(_REMOTE, '/tools/find', { 'Level' : 'Instance', 'Query' : { }}) | |
1391 self.assertEqual(8, len(a)) | |
1392 | |
1393 | |
1394 def test_rest_query_retrieve(self): | |
1395 self.assertEqual(0, len(DoGet(_REMOTE, '/patients'))) | |
1396 | |
1397 # Upload 8 instances | |
1398 for i in range(2): | |
1399 UploadInstance(_REMOTE, 'Brainix/Flair/IM-0001-000%d.dcm' % (i + 1)) | |
1400 UploadInstance(_REMOTE, 'Brainix/Epi/IM-0001-000%d.dcm' % (i + 1)) | |
1401 UploadInstance(_REMOTE, 'Knee/T1/IM-0001-000%d.dcm' % (i + 1)) | |
1402 UploadInstance(_REMOTE, 'Knee/T2/IM-0001-000%d.dcm' % (i + 1)) | |
1403 | |
1404 self.assertEqual(2, len(DoGet(_REMOTE, '/patients'))) | |
1405 for p in DoGet(_REMOTE, '/patients'): | |
1406 DoPost(_REMOTE, '/modalities/orthanctest/store', p) | |
1407 DoDelete(_REMOTE, '/patients/%s' % p) | |
1408 | |
1409 for q in DoGet(_REMOTE, '/queries'): | |
1410 DoDelete(_REMOTE, '/queries/%s' % q) | |
1411 | |
1412 self.assertEqual(0, len(DoGet(_REMOTE, '/patients'))) | |
1413 self.assertEqual(0, len(DoGet(_REMOTE, '/queries'))) | |
1414 a = DoPost(_REMOTE, '/modalities/orthanctest/query', { 'Level' : 'Series', | |
1415 'Query' : { 'PatientName' : '*NE*' }})['ID'] | |
1416 self.assertEqual(1, len(DoGet(_REMOTE, '/queries'))) | |
1417 | |
1418 b = DoGet(_REMOTE, '/queries/%s' % a) | |
1419 self.assertTrue('answers' in b) | |
1420 self.assertTrue('level' in b) | |
1421 self.assertTrue('modality' in b) | |
1422 self.assertTrue('query' in b) | |
1423 self.assertTrue('retrieve' in b) | |
1424 self.assertEqual('Series', DoGet(_REMOTE, '/queries/%s/level' % a)) | |
1425 self.assertEqual('orthanctest', DoGet(_REMOTE, '/queries/%s/modality' % a)) | |
1426 | |
1427 q = DoGet(_REMOTE, '/queries/%s/query?simplify' % a) | |
1428 self.assertEqual(1, len(q)) | |
1429 self.assertTrue('PatientName' in q) | |
1430 self.assertEqual('*NE*', q['PatientName']) | |
1431 | |
1432 self.assertEqual(2, len(DoGet(_REMOTE, '/queries/%s/answers' % a))) | |
1433 | |
1434 s = DoGet(_REMOTE, '/queries/%s/answers/0' % a) | |
1435 self.assertTrue('content' in s) | |
1436 self.assertTrue('retrieve' in s) | |
1437 | |
1438 s = DoGet(_REMOTE, '/queries/%s/answers/0/content?simplify' % a) | |
1439 self.assertEqual('887', s['PatientID']) | |
1440 self.assertEqual('2.16.840.1.113669.632.20.121711.10000160881', s['StudyInstanceUID']) | |
1441 | |
1442 self.assertEqual(0, len(DoGet(_REMOTE, '/patients'))) | |
1443 DoPost(_REMOTE, '/queries/%s/answers/0/retrieve' % a, 'ORTHANC') | |
1444 self.assertEqual(1, len(DoGet(_REMOTE, '/patients'))) | |
1445 self.assertEqual(1, len(DoGet(_REMOTE, '/studies'))) | |
1446 self.assertEqual(1, len(DoGet(_REMOTE, '/series'))) | |
1447 self.assertEqual(2, len(DoGet(_REMOTE, '/instances'))) | |
1448 | |
1449 DoPost(_REMOTE, '/queries/%s/answers/1/retrieve' % a, 'ORTHANC') | |
1450 self.assertEqual(1, len(DoGet(_REMOTE, '/patients'))) | |
1451 self.assertEqual(1, len(DoGet(_REMOTE, '/studies'))) | |
1452 self.assertEqual(2, len(DoGet(_REMOTE, '/series'))) | |
1453 self.assertEqual(4, len(DoGet(_REMOTE, '/instances'))) | |
1454 | |
1455 DoDelete(_REMOTE, '/queries/%s' % a) | |
1456 self.assertEqual(0, len(DoGet(_REMOTE, '/queries'))) | |
1457 | |
1458 | |
1459 def test_parent(self): | |
1460 u = UploadInstance(_REMOTE, 'DummyCT.dcm')['ID'] | |
1461 patient = '6816cb19-844d5aee-85245eba-28e841e6-2414fae2' | |
1462 study = 'b9c08539-26f93bde-c81ab0d7-bffaf2cb-a4d0bdd0' | |
1463 series = 'f2635388-f01d497a-15f7c06b-ad7dba06-c4c599fe' | |
1464 instance = '66a662ce-7430e543-bad44d47-0dc5a943-ec7a538d' | |
1465 self.assertEqual(instance, u); | |
1466 | |
1467 a = DoGet(_REMOTE, '/studies/%s/patient' % study) | |
1468 self.assertEqual('Patient', a['Type']) | |
1469 self.assertEqual(patient, a['ID']) | |
1470 | |
1471 a = DoGet(_REMOTE, '/series/%s/patient' % series) | |
1472 self.assertEqual('Patient', a['Type']) | |
1473 self.assertEqual(patient, a['ID']) | |
1474 | |
1475 a = DoGet(_REMOTE, '/series/%s/study' % series) | |
1476 self.assertEqual('Study', a['Type']) | |
1477 self.assertEqual(study, a['ID']) | |
1478 | |
1479 a = DoGet(_REMOTE, '/instances/%s/patient' % instance) | |
1480 self.assertEqual('Patient', a['Type']) | |
1481 self.assertEqual(patient, a['ID']) | |
1482 | |
1483 a = DoGet(_REMOTE, '/instances/%s/study' % instance) | |
1484 self.assertEqual('Study', a['Type']) | |
1485 self.assertEqual(study, a['ID']) | |
1486 | |
1487 a = DoGet(_REMOTE, '/instances/%s/series' % instance) | |
1488 self.assertEqual('Series', a['Type']) | |
1489 self.assertEqual(series, a['ID']) | |
1490 | |
1491 | |
1492 def test_shanon(self): | |
1493 def Anonymize(instance, replacements = {}): | |
1494 return DoPost(_REMOTE, '/instances/%s/anonymize' % instance, { 'Replace' : replacements }, 'application/json') | |
1495 | |
1496 self.assertEqual(0, len(DoGet(_REMOTE, '/instances'))) | |
1497 u = UploadInstance(_REMOTE, 'DummyCT.dcm')['ID'] | |
1498 self.assertEqual(1, len(DoGet(_REMOTE, '/instances'))) | |
1499 | |
1500 tags = [ 'PatientID', 'StudyInstanceUID', 'SeriesInstanceUID', 'SOPInstanceUID', 'DeidentificationMethod' ] | |
1501 ids = [ 'ozp00SjY2xG', | |
1502 '1.2.840.113619.2.176.2025.1499492.7391.1171285944.390', | |
1503 '1.2.840.113619.2.176.2025.1499492.7391.1171285944.394', | |
1504 '1.2.840.113619.2.176.2025.1499492.7040.1171286242.109' ] | |
1505 | |
1506 a = ExtractDicomTags(Anonymize(u), tags) | |
1507 for i in range(4): | |
1508 self.assertNotEqual(ids[i], a[i]) | |
1509 self.assertTrue(a[4].startswith('Orthanc')) | |
1510 | |
1511 a = ExtractDicomTags(Anonymize(u, { 'PatientName' : 'toto' }), tags) | |
1512 for i in range(4): | |
1513 self.assertNotEqual(ids[i], a[i]) | |
1514 self.assertFalse(a[4].startswith('Orthanc')) | |
1515 | |
1516 a = ExtractDicomTags(Anonymize(u, { 'SOPInstanceUID' : 'instance' }), tags) | |
1517 self.assertEqual('instance', a[3]) | |
1518 self.assertFalse(a[4].startswith('Orthanc')) | |
1519 | |
1520 a = ExtractDicomTags(Anonymize(u, { 'SeriesInstanceUID' : 'series' }), tags) | |
1521 self.assertEqual('series', a[2]) | |
1522 self.assertFalse(a[4].startswith('Orthanc')) | |
1523 | |
1524 a = ExtractDicomTags(Anonymize(u, { 'StudyInstanceUID' : 'study' }), tags) | |
1525 self.assertEqual('study', a[1]) | |
1526 self.assertFalse(a[4].startswith('Orthanc')) | |
1527 | |
1528 a = ExtractDicomTags(Anonymize(u, { 'PatientID' : 'patient' }), tags) | |
1529 self.assertEqual('patient', a[0]) | |
1530 self.assertFalse(a[4].startswith('Orthanc')) | |
1531 | |
1532 a = ExtractDicomTags(Anonymize(u, { 'PatientID' : 'patient', | |
1533 'StudyInstanceUID' : 'study', | |
1534 'SeriesInstanceUID' : 'series', | |
1535 'SOPInstanceUID' : 'instance' }), tags) | |
1536 self.assertEqual('patient', a[0]) | |
1537 self.assertFalse(a[4].startswith('Orthanc')) | |
1538 | |
1539 self.assertEqual(1, len(DoGet(_REMOTE, '/instances'))) | |
1540 | |
1541 | |
1542 def test_shanon_2(self): | |
1543 def Modify(instance, replacements = {}): | |
1544 return DoPost(_REMOTE, '/instances/%s/modify' % instance, { 'Replace' : replacements }, 'application/json') | |
1545 | |
1546 self.assertEqual(0, len(DoGet(_REMOTE, '/instances'))) | |
1547 u = UploadInstance(_REMOTE, 'DummyCT.dcm')['ID'] | |
1548 self.assertEqual(1, len(DoGet(_REMOTE, '/instances'))) | |
1549 | |
1550 tags = [ 'PatientID', 'StudyInstanceUID', 'SeriesInstanceUID', 'SOPInstanceUID', 'DeidentificationMethod' ] | |
1551 ids = [ 'ozp00SjY2xG', | |
1552 '1.2.840.113619.2.176.2025.1499492.7391.1171285944.390', | |
1553 '1.2.840.113619.2.176.2025.1499492.7391.1171285944.394', | |
1554 '1.2.840.113619.2.176.2025.1499492.7040.1171286242.109' ] | |
1555 | |
1556 a = ExtractDicomTags(Modify(u), tags) | |
1557 self.assertEqual(ids[0], a[0]) | |
1558 self.assertEqual(ids[1], a[1]) | |
1559 self.assertEqual(ids[2], a[2]) | |
1560 self.assertNotEqual(ids[3], a[3]) | |
1561 self.assertEqual(0, len(a[4])) | |
1562 | |
1563 a = ExtractDicomTags(Modify(u, { 'SOPInstanceUID' : 'instance' }), tags) | |
1564 self.assertEqual(ids[0], a[0]) | |
1565 self.assertEqual(ids[1], a[1]) | |
1566 self.assertEqual(ids[2], a[2]) | |
1567 self.assertEqual('instance', a[3]) | |
1568 | |
1569 a = ExtractDicomTags(Modify(u, { 'SeriesInstanceUID' : 'series' }), tags) | |
1570 self.assertEqual(ids[0], a[0]) | |
1571 self.assertEqual(ids[1], a[1]) | |
1572 self.assertEqual('series', a[2]) | |
1573 self.assertNotEqual(ids[3], a[3]) | |
1574 | |
1575 a = ExtractDicomTags(Modify(u, { 'StudyInstanceUID' : 'study' }), tags) | |
1576 self.assertEqual(ids[0], a[0]) | |
1577 self.assertEqual('study', a[1]) | |
1578 self.assertNotEqual(ids[2], a[2]) | |
1579 self.assertNotEqual(ids[3], a[3]) | |
1580 | |
1581 a = ExtractDicomTags(Modify(u, { 'PatientID' : 'patient' }), tags) | |
1582 self.assertEqual('patient', a[0]) | |
1583 self.assertNotEqual(ids[1], a[1]) | |
1584 self.assertNotEqual(ids[2], a[2]) | |
1585 self.assertNotEqual(ids[3], a[3]) | |
1586 | |
1587 a = ExtractDicomTags(Modify(u, { 'PatientID' : 'patient', | |
1588 'StudyInstanceUID' : 'study', | |
1589 'SeriesInstanceUID' : 'series', | |
1590 'SOPInstanceUID' : 'instance' }), tags) | |
1591 self.assertEqual('patient', a[0]) | |
1592 self.assertEqual('study', a[1]) | |
1593 self.assertEqual('series', a[2]) | |
1594 self.assertEqual('instance', a[3]) | |
1595 | |
1596 self.assertEqual(1, len(DoGet(_REMOTE, '/instances'))) | |
1597 | |
1598 | |
1599 def test_instances_tags(self): | |
1600 a = UploadInstance(_REMOTE, 'Knee/T1/IM-0001-0001.dcm')['ID'] | |
1601 b = UploadInstance(_REMOTE, 'Knee/T2/IM-0001-0001.dcm')['ID'] | |
1602 #a = UploadInstance(_REMOTE, 'Cardiac/MR.X.1.2.276.0.7230010.3.1.4.2831157719.2256.1336386937.676343')['ID'] | |
1603 #b = UploadInstance(_REMOTE, 'Cardiac/MR.X.1.2.276.0.7230010.3.1.4.2831157719.2256.1336386925.676329')['ID'] | |
1604 | |
1605 i = DoGet(_REMOTE, '/patients/%s/instances-tags?simplify' % DoGet(_REMOTE, '/patients')[0]) | |
1606 self.assertEqual(2, len(i)) | |
1607 self.assertEqual('887', i[i.keys()[0]]['PatientID']) | |
1608 self.assertEqual('887', i[i.keys()[1]]['PatientID']) | |
1609 | |
1610 i = DoGet(_REMOTE, '/patients/%s/instances-tags?simplify' % DoGet(_REMOTE, '/studies')[0]) | |
1611 self.assertEqual(2, len(i)) | |
1612 self.assertEqual('887', i[i.keys()[0]]['PatientID']) | |
1613 self.assertEqual('887', i[i.keys()[1]]['PatientID']) | |
1614 | |
1615 self.assertEqual(2, len(DoGet(_REMOTE, '/series'))) | |
1616 i = DoGet(_REMOTE, '/patients/%s/instances-tags?simplify' % DoGet(_REMOTE, '/series')[0]) | |
1617 self.assertEqual(1, len(i)) | |
1618 self.assertEqual('887', i[i.keys()[0]]['PatientID']) | |
1619 | |
1620 i = DoGet(_REMOTE, '/patients/%s/instances-tags?simplify' % DoGet(_REMOTE, '/series')[1]) | |
1621 self.assertEqual(1, len(i)) | |
1622 self.assertEqual('887', i[i.keys()[0]]['PatientID']) | |
1623 | |
1624 | |
1625 def test_lookup(self): | |
1626 a = DoPost(_REMOTE, '/tools/lookup', 'ozp00SjY2xG') | |
1627 self.assertEqual(0, len(a)) | |
1628 | |
1629 UploadInstance(_REMOTE, 'DummyCT.dcm') | |
1630 | |
1631 a = DoPost(_REMOTE, '/tools/lookup', 'ozp00SjY2xG') | |
1632 self.assertEqual(1, len(a)) | |
1633 self.assertEqual('Patient', a[0]['Type']) | |
1634 self.assertEqual('6816cb19-844d5aee-85245eba-28e841e6-2414fae2', a[0]['ID']) | |
1635 self.assertEqual('/patients/%s' % a[0]['ID'], a[0]['Path']) | |
1636 | |
1637 a = DoPost(_REMOTE, '/tools/lookup', '1.2.840.113619.2.176.2025.1499492.7391.1171285944.390') | |
1638 self.assertEqual(1, len(a)) | |
1639 self.assertEqual('Study', a[0]['Type']) | |
1640 self.assertEqual('b9c08539-26f93bde-c81ab0d7-bffaf2cb-a4d0bdd0', a[0]['ID']) | |
1641 self.assertEqual('/studies/%s' % a[0]['ID'], a[0]['Path']) | |
1642 | |
1643 a = DoPost(_REMOTE, '/tools/lookup', '1.2.840.113619.2.176.2025.1499492.7391.1171285944.394') | |
1644 self.assertEqual(1, len(a)) | |
1645 self.assertEqual('Series', a[0]['Type']) | |
1646 self.assertEqual('f2635388-f01d497a-15f7c06b-ad7dba06-c4c599fe', a[0]['ID']) | |
1647 self.assertEqual('/series/%s' % a[0]['ID'], a[0]['Path']) | |
1648 | |
1649 a = DoPost(_REMOTE, '/tools/lookup', '1.2.840.113619.2.176.2025.1499492.7040.1171286242.109') | |
1650 self.assertEqual(1, len(a)) | |
1651 self.assertEqual('Instance', a[0]['Type']) | |
1652 self.assertEqual('66a662ce-7430e543-bad44d47-0dc5a943-ec7a538d', a[0]['ID']) | |
1653 self.assertEqual('/instances/%s' % a[0]['ID'], a[0]['Path']) | |
1654 | |
1655 DropOrthanc(_REMOTE) | |
1656 a = DoPost(_REMOTE, '/tools/lookup', '3113719P') | |
1657 self.assertEqual(0, len(a)) | |
1658 |