annotate Tests/Tests.py @ 14:ed9a9fe66002

cont
author Sebastien Jodogne <s.jodogne@gmail.com>
date Thu, 18 Jun 2015 17:38:31 +0200
parents 7b69a561f4d3
children 2e5dbbbe3889
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1 # Orthanc - A Lightweight, RESTful DICOM Store
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2 # Copyright (C) 2012-2015 Sebastien Jodogne, Medical Physics
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3 # Department, University Hospital of Liege, Belgium
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4 #
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5 # This program is free software: you can redistribute it and/or
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6 # modify it under the terms of the GNU General Public License as
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7 # published by the Free Software Foundation, either version 3 of the
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8 # License, or (at your option) any later version.
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9 #
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10 # This program is distributed in the hope that it will be useful, but
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11 # WITHOUT ANY WARRANTY; without even the implied warranty of
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12 # MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU
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13 # General Public License for more details.
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14 #
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15 # You should have received a copy of the GNU General Public License
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16 # along with this program. If not, see <http://www.gnu.org/licenses/>.
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17
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18
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19 import tempfile
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20 import unittest
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21
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22 from PIL import ImageChops
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23 from Toolbox import *
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24 from xml.dom import minidom
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25
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26 _LOCAL = None
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27 _REMOTE = None
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28
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29
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30 def SetOrthancParameters(local, remote):
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31 global _LOCAL, _REMOTE
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32 _LOCAL = local
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33 _REMOTE = remote
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35
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36 def ExtractDicomTags(rawDicom, tags):
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37 with tempfile.NamedTemporaryFile(delete = True) as f:
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38 f.write(rawDicom)
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39 f.flush()
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40 data = subprocess.check_output([ 'dcm2xml', f.name ])
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41
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42 result = []
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43 for tag in tags:
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44 match = re.search('<element[^>]+name="%s">([^>]*)</element>' % tag, data)
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45 if match == None:
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46 result.append('')
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47 else:
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48 result.append(match.group(1))
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49
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50 return result
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51
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52
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53 class Orthanc(unittest.TestCase):
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54 def setUp(self):
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55 DropOrthanc(_LOCAL)
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56 DropOrthanc(_REMOTE)
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57
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58 def test_system(self):
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59 self.assertTrue('Version' in DoGet(_REMOTE, '/system'))
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60 self.assertEqual('0', DoGet(_REMOTE, '/statistics')['TotalDiskSize'])
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61 self.assertEqual('0', DoGet(_REMOTE, '/statistics')['TotalUncompressedSize'])
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62
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63 def test_upload(self):
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64 u = UploadInstance(_REMOTE, 'DummyCT.dcm')
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65 self.assertEqual('Success', u['Status'])
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66 u = UploadInstance(_REMOTE, 'DummyCT.dcm')
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67 self.assertEqual('AlreadyStored', u['Status'])
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68 self.assertEqual(1, len(DoGet(_REMOTE, '/patients')))
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69 self.assertEqual(1, len(DoGet(_REMOTE, '/studies')))
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70 self.assertEqual(1, len(DoGet(_REMOTE, '/series')))
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71 self.assertEqual(1, len(DoGet(_REMOTE, '/instances')))
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72
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73 i = DoGet(_REMOTE, '/instances/%s/simplified-tags' % u['ID'])
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74 self.assertEqual('20070101', i['StudyDate'])
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75
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76
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77 def test_upload_2(self):
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78 i = UploadInstance(_REMOTE, 'DummyCT.dcm')['ID']
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79 instance = DoGet(_REMOTE, '/instances/%s' % i)
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80 self.assertEqual(i, instance['ID'])
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81 self.assertEqual('1.2.840.113619.2.176.2025.1499492.7040.1171286242.109',
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82 instance['MainDicomTags']['SOPInstanceUID'])
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83
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84 series = DoGet(_REMOTE, '/series/%s' % instance['ParentSeries'])
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85 self.assertEqual('1.2.840.113619.2.176.2025.1499492.7391.1171285944.394',
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86 series['MainDicomTags']['SeriesInstanceUID'])
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87
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88 study = DoGet(_REMOTE, '/studies/%s' % series['ParentStudy'])
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89 self.assertEqual('1.2.840.113619.2.176.2025.1499492.7391.1171285944.390',
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90 study['MainDicomTags']['StudyInstanceUID'])
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91
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92 patient = DoGet(_REMOTE, '/patients/%s' % study['ParentPatient'])
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93 self.assertEqual('ozp00SjY2xG',
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94 patient['MainDicomTags']['PatientID'])
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95
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96 dicom = DoGet(_REMOTE, '/instances/%s/file' % instance['ID'])
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97 self.assertEqual(2472, len(dicom))
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98 self.assertEqual('3e29b869978b6db4886355a2b1132124', ComputeMD5(dicom))
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99 self.assertEqual(1, len(DoGet(_REMOTE, '/instances/%s/frames' % i)))
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100 self.assertEqual('TWINOW', DoGet(_REMOTE, '/instances/%s/simplified-tags' % i)['StationName'])
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101 self.assertEqual('TWINOW', DoGet(_REMOTE, '/instances/%s/tags' % i)['0008,1010']['Value'])
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102
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103
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104 def test_images(self):
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105 i = UploadInstance(_REMOTE, 'Phenix/IM-0001-0001.dcm')['ID']
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106 self.assertEqual(1, len(DoGet(_REMOTE, '/instances/%s/frames' % i)))
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107
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108 im = GetImage(_REMOTE, '/instances/%s/preview' % i)
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109 self.assertEqual("L", im.mode)
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110 self.assertEqual(512, im.size[0])
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111 self.assertEqual(358, im.size[1])
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112
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113 im = GetImage(_REMOTE, '/instances/%s/image-uint8' % i)
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114 self.assertEqual("L", im.mode)
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115 self.assertEqual(512, im.size[0])
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116 self.assertEqual(358, im.size[1])
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117
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118 im = GetImage(_REMOTE, '/instances/%s/image-uint16' % i)
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119 self.assertEqual(512, im.size[0])
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120 self.assertEqual(358, im.size[1])
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121
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122 im = GetImage(_REMOTE, '/instances/%s/frames/0/preview' % i)
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123 self.assertEqual("L", im.mode)
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124 self.assertEqual(512, im.size[0])
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125 self.assertEqual(358, im.size[1])
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126
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127 im = GetImage(_REMOTE, '/instances/%s/frames/0/image-uint8' % i)
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128 self.assertEqual("L", im.mode)
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129 self.assertEqual(512, im.size[0])
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130 self.assertEqual(358, im.size[1])
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131
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132 im = GetImage(_REMOTE, '/instances/%s/frames/0/image-uint16' % i)
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133 self.assertEqual(512, im.size[0])
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134 self.assertEqual(358, im.size[1])
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135
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136
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137 def test_hierarchy(self):
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138 UploadFolder(_REMOTE, 'Brainix/Epi')
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139 UploadFolder(_REMOTE, 'Brainix/Flair')
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140 UploadFolder(_REMOTE, 'Knee/T1')
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141 UploadFolder(_REMOTE, 'Knee/T2')
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142
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143 p = DoGet(_REMOTE, '/patients')
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parents: 5
diff changeset
144 s = DoGet(_REMOTE, '/studies')
6d645b3011e1 test_hierarchy
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 5
diff changeset
145 t = DoGet(_REMOTE, '/series')
6d645b3011e1 test_hierarchy
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 5
diff changeset
146 self.assertEqual(2, len(p))
6d645b3011e1 test_hierarchy
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 5
diff changeset
147 self.assertEqual(2, len(s))
6d645b3011e1 test_hierarchy
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 5
diff changeset
148 self.assertEqual(4, len(t))
6d645b3011e1 test_hierarchy
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 5
diff changeset
149 self.assertEqual(94, len(DoGet(_REMOTE, '/instances')))
6d645b3011e1 test_hierarchy
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 5
diff changeset
150
6d645b3011e1 test_hierarchy
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 5
diff changeset
151 brainixPatient = '16738bc3-e47ed42a-43ce044c-a3414a45-cb069bd0'
6d645b3011e1 test_hierarchy
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 5
diff changeset
152 brainixStudy = '27f7126f-4f66fb14-03f4081b-f9341db2-53925988'
6d645b3011e1 test_hierarchy
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 5
diff changeset
153 brainixEpi = '2ac1316d-3e432022-62eabff2-c59f5475-9b1ac3f8'
6d645b3011e1 test_hierarchy
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 5
diff changeset
154 brainixFlair = '1e2c125c-411b8e86-3f4fe68e-a7584dd3-c6da78f0'
6d645b3011e1 test_hierarchy
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 5
diff changeset
155
6d645b3011e1 test_hierarchy
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 5
diff changeset
156 kneePatient = 'ca29faea-b6a0e17f-067743a1-8b778011-a48b2a17'
6d645b3011e1 test_hierarchy
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 5
diff changeset
157 kneeStudy = '0a9b3153-2512774b-2d9580de-1fc3dcf6-3bd83918'
6d645b3011e1 test_hierarchy
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 5
diff changeset
158 kneeT1 = '6de73705-c4e65c1b-9d9ea1b5-cabcd8e7-f15e4285'
6d645b3011e1 test_hierarchy
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 5
diff changeset
159 kneeT2 = 'bbf7a453-0d34251a-03663b55-46bb31b9-ffd74c59'
6d645b3011e1 test_hierarchy
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 5
diff changeset
160
6d645b3011e1 test_hierarchy
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 5
diff changeset
161 self.assertTrue(brainixPatient in p)
6d645b3011e1 test_hierarchy
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 5
diff changeset
162 self.assertTrue(kneePatient in p)
6d645b3011e1 test_hierarchy
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 5
diff changeset
163 self.assertTrue(brainixStudy in s)
6d645b3011e1 test_hierarchy
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 5
diff changeset
164 self.assertTrue(kneeStudy in s)
6d645b3011e1 test_hierarchy
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 5
diff changeset
165 self.assertTrue(brainixEpi in t)
6d645b3011e1 test_hierarchy
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 5
diff changeset
166 self.assertTrue(brainixFlair in t)
6d645b3011e1 test_hierarchy
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 5
diff changeset
167 self.assertTrue(kneeT1 in t)
6d645b3011e1 test_hierarchy
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 5
diff changeset
168 self.assertTrue(kneeT2 in t)
6d645b3011e1 test_hierarchy
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 5
diff changeset
169
6d645b3011e1 test_hierarchy
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 5
diff changeset
170 self.assertEqual(44, len(DoGet(_REMOTE, '/patients/%s/instances' % brainixPatient)))
6d645b3011e1 test_hierarchy
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 5
diff changeset
171 self.assertEqual(2, len(DoGet(_REMOTE, '/patients/%s/series' % brainixPatient)))
6d645b3011e1 test_hierarchy
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 5
diff changeset
172 self.assertEqual(1, len(DoGet(_REMOTE, '/patients/%s/studies' % brainixPatient)))
6d645b3011e1 test_hierarchy
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 5
diff changeset
173
6d645b3011e1 test_hierarchy
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 5
diff changeset
174 self.assertEqual(50, len(DoGet(_REMOTE, '/patients/%s/instances' % kneePatient)))
6d645b3011e1 test_hierarchy
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 5
diff changeset
175 self.assertEqual(2, len(DoGet(_REMOTE, '/patients/%s/series' % kneePatient)))
6d645b3011e1 test_hierarchy
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 5
diff changeset
176 self.assertEqual(1, len(DoGet(_REMOTE, '/patients/%s/studies' % kneePatient)))
6d645b3011e1 test_hierarchy
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 5
diff changeset
177
6d645b3011e1 test_hierarchy
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 5
diff changeset
178 self.assertEqual(2, len(DoGet(_REMOTE, '/studies/%s/series' % brainixStudy)))
6d645b3011e1 test_hierarchy
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 5
diff changeset
179 self.assertEqual(44, len(DoGet(_REMOTE, '/studies/%s/instances' % brainixStudy)))
6d645b3011e1 test_hierarchy
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 5
diff changeset
180
6d645b3011e1 test_hierarchy
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 5
diff changeset
181 self.assertEqual(2, len(DoGet(_REMOTE, '/studies/%s/series' % kneeStudy)))
6d645b3011e1 test_hierarchy
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 5
diff changeset
182 self.assertEqual(50, len(DoGet(_REMOTE, '/studies/%s/instances' % kneeStudy)))
6d645b3011e1 test_hierarchy
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 5
diff changeset
183
6d645b3011e1 test_hierarchy
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 5
diff changeset
184 self.assertEqual(22, len(DoGet(_REMOTE, '/series/%s/instances' % brainixEpi)))
6d645b3011e1 test_hierarchy
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 5
diff changeset
185 self.assertEqual(22, len(DoGet(_REMOTE, '/series/%s/instances' % brainixFlair)))
6d645b3011e1 test_hierarchy
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 5
diff changeset
186 self.assertEqual(24, len(DoGet(_REMOTE, '/series/%s/instances' % kneeT1)))
6d645b3011e1 test_hierarchy
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 5
diff changeset
187 self.assertEqual(26, len(DoGet(_REMOTE, '/series/%s/instances' % kneeT2)))
6d645b3011e1 test_hierarchy
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 5
diff changeset
188
6d645b3011e1 test_hierarchy
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 5
diff changeset
189 for patient in p:
6d645b3011e1 test_hierarchy
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 5
diff changeset
190 for study in DoGet(_REMOTE, '/patients/%s/studies' % patient):
6d645b3011e1 test_hierarchy
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 5
diff changeset
191 self.assertEqual(patient, study['ParentPatient'])
6d645b3011e1 test_hierarchy
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 5
diff changeset
192 for series in DoGet(_REMOTE, '/studies/%s/series' % study['ID']):
6d645b3011e1 test_hierarchy
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 5
diff changeset
193 self.assertEqual(study['ID'], series['ParentStudy'])
6d645b3011e1 test_hierarchy
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 5
diff changeset
194 for instance in DoGet(_REMOTE, '/series/%s/instances' % series['ID']):
6d645b3011e1 test_hierarchy
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 5
diff changeset
195 self.assertEqual(series['ID'], instance['ParentSeries'])
6d645b3011e1 test_hierarchy
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 5
diff changeset
196
6d645b3011e1 test_hierarchy
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 5
diff changeset
197 self.assertEqual(json.dumps(DoGet(_REMOTE, '/instances/%s/attachments/dicom-as-json/data' % instance['ID'])),
6d645b3011e1 test_hierarchy
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 5
diff changeset
198 json.dumps(DoGet(_REMOTE, '/instances/%s/tags' % instance['ID'])))
6d645b3011e1 test_hierarchy
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 5
diff changeset
199
6d645b3011e1 test_hierarchy
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 5
diff changeset
200
6d645b3011e1 test_hierarchy
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 5
diff changeset
201 r = DoDelete(_REMOTE, "/studies/%s" % brainixStudy)['RemainingAncestor']
6d645b3011e1 test_hierarchy
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 5
diff changeset
202 self.assertEqual(1, len(DoGet(_REMOTE, '/patients')))
6d645b3011e1 test_hierarchy
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 5
diff changeset
203 self.assertEqual(1, len(DoGet(_REMOTE, '/studies')))
6d645b3011e1 test_hierarchy
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 5
diff changeset
204 self.assertEqual(2, len(DoGet(_REMOTE, '/series')))
6d645b3011e1 test_hierarchy
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 5
diff changeset
205 self.assertEqual(50, len(DoGet(_REMOTE, '/instances')))
6d645b3011e1 test_hierarchy
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 5
diff changeset
206 self.assertEqual(None, r)
6d645b3011e1 test_hierarchy
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 5
diff changeset
207
6d645b3011e1 test_hierarchy
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 5
diff changeset
208 r = DoDelete(_REMOTE, "/series/%s" % kneeT2)['RemainingAncestor']
6d645b3011e1 test_hierarchy
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 5
diff changeset
209 self.assertEqual(1, len(DoGet(_REMOTE, '/patients')))
6d645b3011e1 test_hierarchy
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 5
diff changeset
210 self.assertEqual(1, len(DoGet(_REMOTE, '/studies')))
6d645b3011e1 test_hierarchy
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 5
diff changeset
211 self.assertEqual(1, len(DoGet(_REMOTE, '/series')))
6d645b3011e1 test_hierarchy
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 5
diff changeset
212 self.assertEqual(24, len(DoGet(_REMOTE, '/instances')))
6d645b3011e1 test_hierarchy
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 5
diff changeset
213 self.assertEqual('Study', r['Type'])
6d645b3011e1 test_hierarchy
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 5
diff changeset
214 self.assertEqual(kneeStudy, r['ID'])
6d645b3011e1 test_hierarchy
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 5
diff changeset
215
6d645b3011e1 test_hierarchy
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 5
diff changeset
216 r = DoDelete(_REMOTE, "/instances/%s" % DoGet(_REMOTE, '/instances')[0])['RemainingAncestor']
6d645b3011e1 test_hierarchy
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 5
diff changeset
217 self.assertEqual(1, len(DoGet(_REMOTE, '/patients')))
6d645b3011e1 test_hierarchy
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 5
diff changeset
218 self.assertEqual(1, len(DoGet(_REMOTE, '/studies')))
6d645b3011e1 test_hierarchy
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 5
diff changeset
219 self.assertEqual(1, len(DoGet(_REMOTE, '/series')))
6d645b3011e1 test_hierarchy
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 5
diff changeset
220 self.assertEqual(23, len(DoGet(_REMOTE, '/instances')))
6d645b3011e1 test_hierarchy
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 5
diff changeset
221 self.assertEqual('Series', r['Type'])
6d645b3011e1 test_hierarchy
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 5
diff changeset
222 self.assertEqual(kneeT1, r['ID'])
6d645b3011e1 test_hierarchy
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 5
diff changeset
223
6d645b3011e1 test_hierarchy
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 5
diff changeset
224 r = DoDelete(_REMOTE, "/patients/%s" % kneePatient)['RemainingAncestor']
6d645b3011e1 test_hierarchy
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 5
diff changeset
225 self.assertEqual(0, len(DoGet(_REMOTE, '/patients')))
6d645b3011e1 test_hierarchy
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 5
diff changeset
226 self.assertEqual(0, len(DoGet(_REMOTE, '/studies')))
6d645b3011e1 test_hierarchy
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 5
diff changeset
227 self.assertEqual(0, len(DoGet(_REMOTE, '/series')))
6d645b3011e1 test_hierarchy
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 5
diff changeset
228 self.assertEqual(0, len(DoGet(_REMOTE, '/instances')))
6d645b3011e1 test_hierarchy
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 5
diff changeset
229 self.assertEqual(None, r)
6d645b3011e1 test_hierarchy
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 5
diff changeset
230
6d645b3011e1 test_hierarchy
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 5
diff changeset
231 DropOrthanc(_REMOTE)
6d645b3011e1 test_hierarchy
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 5
diff changeset
232 self.assertEqual('0', DoGet(_REMOTE, '/statistics')['TotalDiskSize'])
6d645b3011e1 test_hierarchy
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 5
diff changeset
233 self.assertEqual('0', DoGet(_REMOTE, '/statistics')['TotalUncompressedSize'])
7
302f06f3bba2 test_multi_frame
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 6
diff changeset
234
302f06f3bba2 test_multi_frame
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 6
diff changeset
235
302f06f3bba2 test_multi_frame
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 6
diff changeset
236 def test_multi_frame(self):
302f06f3bba2 test_multi_frame
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 6
diff changeset
237 i = UploadInstance(_REMOTE, 'Multiframe.dcm')['ID']
302f06f3bba2 test_multi_frame
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 6
diff changeset
238 self.assertEqual(76, len(DoGet(_REMOTE, '/instances/%s/frames' % i)))
302f06f3bba2 test_multi_frame
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 6
diff changeset
239
302f06f3bba2 test_multi_frame
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 6
diff changeset
240 im = GetImage(_REMOTE, '/instances/%s/frames/0/preview' % i)
302f06f3bba2 test_multi_frame
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 6
diff changeset
241 self.assertEqual("L", im.mode)
302f06f3bba2 test_multi_frame
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 6
diff changeset
242 self.assertEqual(512, im.size[0])
302f06f3bba2 test_multi_frame
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 6
diff changeset
243 self.assertEqual(512, im.size[1])
302f06f3bba2 test_multi_frame
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 6
diff changeset
244
302f06f3bba2 test_multi_frame
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 6
diff changeset
245 DoGet(_REMOTE, '/instances/%s/frames/0/image-uint8' % i)
302f06f3bba2 test_multi_frame
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 6
diff changeset
246 DoGet(_REMOTE, '/instances/%s/frames/0/image-uint16' % i)
302f06f3bba2 test_multi_frame
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 6
diff changeset
247 DoGet(_REMOTE, '/instances/%s/frames/75/preview' % i)
302f06f3bba2 test_multi_frame
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 6
diff changeset
248 self.assertRaises(Exception, lambda: DoGet(_REMOTE, '/instances/%s/frames/aaa/preview' % i))
302f06f3bba2 test_multi_frame
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 6
diff changeset
249 self.assertRaises(Exception, lambda: DoGet(_REMOTE, '/instances/%s/frames/76/preview' % i))
302f06f3bba2 test_multi_frame
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 6
diff changeset
250
8
f8d781d1d267 test_changes, test_archive, test_media_archive
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 7
diff changeset
251
f8d781d1d267 test_changes, test_archive, test_media_archive
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 7
diff changeset
252 def test_changes(self):
f8d781d1d267 test_changes, test_archive, test_media_archive
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 7
diff changeset
253 # Check emptiness
f8d781d1d267 test_changes, test_archive, test_media_archive
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 7
diff changeset
254 c = DoGet(_REMOTE, '/changes')
f8d781d1d267 test_changes, test_archive, test_media_archive
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 7
diff changeset
255 self.assertEqual(0, len(c['Changes']))
f8d781d1d267 test_changes, test_archive, test_media_archive
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 7
diff changeset
256 self.assertEqual(0, c['Last'])
f8d781d1d267 test_changes, test_archive, test_media_archive
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 7
diff changeset
257 self.assertTrue(c['Done'])
f8d781d1d267 test_changes, test_archive, test_media_archive
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 7
diff changeset
258 c = DoGet(_REMOTE, '/changes?last')
f8d781d1d267 test_changes, test_archive, test_media_archive
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 7
diff changeset
259 self.assertEqual(0, len(c['Changes']))
f8d781d1d267 test_changes, test_archive, test_media_archive
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 7
diff changeset
260 self.assertEqual(0, c['Last'])
f8d781d1d267 test_changes, test_archive, test_media_archive
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 7
diff changeset
261 self.assertTrue(c['Done'])
f8d781d1d267 test_changes, test_archive, test_media_archive
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 7
diff changeset
262
f8d781d1d267 test_changes, test_archive, test_media_archive
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 7
diff changeset
263 # Add 1 instance
f8d781d1d267 test_changes, test_archive, test_media_archive
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 7
diff changeset
264 i = UploadInstance(_REMOTE, 'Brainix/Flair/IM-0001-0001.dcm')['ID']
f8d781d1d267 test_changes, test_archive, test_media_archive
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 7
diff changeset
265 c = DoGet(_REMOTE, '/changes')
f8d781d1d267 test_changes, test_archive, test_media_archive
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 7
diff changeset
266 begin = c['Last']
f8d781d1d267 test_changes, test_archive, test_media_archive
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 7
diff changeset
267 self.assertEqual(4, len(c['Changes']))
f8d781d1d267 test_changes, test_archive, test_media_archive
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 7
diff changeset
268 self.assertTrue(c['Done'])
f8d781d1d267 test_changes, test_archive, test_media_archive
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 7
diff changeset
269 self.assertEqual(c['Changes'][-1]['Seq'], c['Last'])
f8d781d1d267 test_changes, test_archive, test_media_archive
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 7
diff changeset
270
f8d781d1d267 test_changes, test_archive, test_media_archive
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 7
diff changeset
271 c = DoGet(_REMOTE, '/changes?last')
f8d781d1d267 test_changes, test_archive, test_media_archive
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 7
diff changeset
272 self.assertEqual(1, len(c['Changes']))
f8d781d1d267 test_changes, test_archive, test_media_archive
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 7
diff changeset
273 self.assertEqual(begin, c['Last'])
f8d781d1d267 test_changes, test_archive, test_media_archive
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 7
diff changeset
274 self.assertTrue(c['Done'])
f8d781d1d267 test_changes, test_archive, test_media_archive
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 7
diff changeset
275 c = DoGet(_REMOTE, '/changes?limit=1&since=' + str(begin - 1))
f8d781d1d267 test_changes, test_archive, test_media_archive
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 7
diff changeset
276 self.assertEqual(1, len(c['Changes']))
f8d781d1d267 test_changes, test_archive, test_media_archive
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 7
diff changeset
277 self.assertEqual(begin, c['Last'])
f8d781d1d267 test_changes, test_archive, test_media_archive
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 7
diff changeset
278 self.assertTrue(c['Done'])
f8d781d1d267 test_changes, test_archive, test_media_archive
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 7
diff changeset
279 c = DoGet(_REMOTE, '/changes?limit=1&since=' + str(begin - 2))
f8d781d1d267 test_changes, test_archive, test_media_archive
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 7
diff changeset
280 self.assertEqual(1, len(c['Changes']))
f8d781d1d267 test_changes, test_archive, test_media_archive
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 7
diff changeset
281 self.assertEqual(begin - 1, c['Last'])
f8d781d1d267 test_changes, test_archive, test_media_archive
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 7
diff changeset
282 self.assertFalse(c['Done'])
f8d781d1d267 test_changes, test_archive, test_media_archive
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 7
diff changeset
283 c = DoGet(_REMOTE, '/changes?limit=1&since=' + str(begin - 3))
f8d781d1d267 test_changes, test_archive, test_media_archive
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 7
diff changeset
284 self.assertEqual(1, len(c['Changes']))
f8d781d1d267 test_changes, test_archive, test_media_archive
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 7
diff changeset
285 self.assertEqual(begin - 2, c['Last'])
f8d781d1d267 test_changes, test_archive, test_media_archive
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 7
diff changeset
286 self.assertFalse(c['Done'])
f8d781d1d267 test_changes, test_archive, test_media_archive
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 7
diff changeset
287
f8d781d1d267 test_changes, test_archive, test_media_archive
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 7
diff changeset
288 UploadFolder(_REMOTE, 'Knee/T1')
f8d781d1d267 test_changes, test_archive, test_media_archive
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 7
diff changeset
289 UploadFolder(_REMOTE, 'Knee/T2')
f8d781d1d267 test_changes, test_archive, test_media_archive
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 7
diff changeset
290 since = begin
f8d781d1d267 test_changes, test_archive, test_media_archive
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 7
diff changeset
291 countPatients = 0
f8d781d1d267 test_changes, test_archive, test_media_archive
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 7
diff changeset
292 countStudies = 0
f8d781d1d267 test_changes, test_archive, test_media_archive
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 7
diff changeset
293 countSeries = 0
f8d781d1d267 test_changes, test_archive, test_media_archive
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 7
diff changeset
294 countInstances = 0
f8d781d1d267 test_changes, test_archive, test_media_archive
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 7
diff changeset
295 completed = 0
f8d781d1d267 test_changes, test_archive, test_media_archive
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 7
diff changeset
296 while True:
f8d781d1d267 test_changes, test_archive, test_media_archive
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 7
diff changeset
297 c = DoGet(_REMOTE, '/changes', { 'since' : since, 'limit' : 3 })
f8d781d1d267 test_changes, test_archive, test_media_archive
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 7
diff changeset
298 since = c['Last']
f8d781d1d267 test_changes, test_archive, test_media_archive
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 7
diff changeset
299 for i in c['Changes']:
f8d781d1d267 test_changes, test_archive, test_media_archive
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 7
diff changeset
300 if i['ResourceType'] == 'Instance':
f8d781d1d267 test_changes, test_archive, test_media_archive
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 7
diff changeset
301 countInstances += 1
f8d781d1d267 test_changes, test_archive, test_media_archive
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 7
diff changeset
302 if i['ResourceType'] == 'Patient':
f8d781d1d267 test_changes, test_archive, test_media_archive
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 7
diff changeset
303 countPatients += 1
f8d781d1d267 test_changes, test_archive, test_media_archive
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 7
diff changeset
304 if i['ResourceType'] == 'Study':
f8d781d1d267 test_changes, test_archive, test_media_archive
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 7
diff changeset
305 countStudies += 1
f8d781d1d267 test_changes, test_archive, test_media_archive
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 7
diff changeset
306 if i['ResourceType'] == 'Series':
f8d781d1d267 test_changes, test_archive, test_media_archive
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 7
diff changeset
307 countSeries += 1
f8d781d1d267 test_changes, test_archive, test_media_archive
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 7
diff changeset
308 if i['ChangeType'] == 'NewInstance':
f8d781d1d267 test_changes, test_archive, test_media_archive
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 7
diff changeset
309 countInstances += 1
f8d781d1d267 test_changes, test_archive, test_media_archive
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 7
diff changeset
310 if i['ChangeType'] == 'NewPatient':
f8d781d1d267 test_changes, test_archive, test_media_archive
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 7
diff changeset
311 countPatients += 1
f8d781d1d267 test_changes, test_archive, test_media_archive
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 7
diff changeset
312 if i['ChangeType'] == 'NewStudy':
f8d781d1d267 test_changes, test_archive, test_media_archive
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 7
diff changeset
313 countStudies += 1
f8d781d1d267 test_changes, test_archive, test_media_archive
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 7
diff changeset
314 if i['ChangeType'] == 'NewSeries':
f8d781d1d267 test_changes, test_archive, test_media_archive
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 7
diff changeset
315 countSeries += 1
f8d781d1d267 test_changes, test_archive, test_media_archive
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 7
diff changeset
316 if i['ChangeType'] == 'CompletedSeries':
f8d781d1d267 test_changes, test_archive, test_media_archive
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 7
diff changeset
317 completed += 1
f8d781d1d267 test_changes, test_archive, test_media_archive
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 7
diff changeset
318 self.assertTrue('ID' in i)
f8d781d1d267 test_changes, test_archive, test_media_archive
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 7
diff changeset
319 self.assertTrue('Path' in i)
f8d781d1d267 test_changes, test_archive, test_media_archive
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 7
diff changeset
320 self.assertTrue('Seq' in i)
f8d781d1d267 test_changes, test_archive, test_media_archive
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 7
diff changeset
321 if c['Done']:
f8d781d1d267 test_changes, test_archive, test_media_archive
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 7
diff changeset
322 break
f8d781d1d267 test_changes, test_archive, test_media_archive
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 7
diff changeset
323
f8d781d1d267 test_changes, test_archive, test_media_archive
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 7
diff changeset
324 self.assertEqual(2 * 50, countInstances)
f8d781d1d267 test_changes, test_archive, test_media_archive
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 7
diff changeset
325 self.assertEqual(2 * 1, countPatients)
f8d781d1d267 test_changes, test_archive, test_media_archive
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 7
diff changeset
326 self.assertEqual(2 * 1, countStudies)
f8d781d1d267 test_changes, test_archive, test_media_archive
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 7
diff changeset
327 self.assertEqual(2 * 2, countSeries)
f8d781d1d267 test_changes, test_archive, test_media_archive
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 7
diff changeset
328 self.assertEqual(0, completed)
f8d781d1d267 test_changes, test_archive, test_media_archive
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 7
diff changeset
329
f8d781d1d267 test_changes, test_archive, test_media_archive
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 7
diff changeset
330
f8d781d1d267 test_changes, test_archive, test_media_archive
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 7
diff changeset
331 def test_archive(self):
f8d781d1d267 test_changes, test_archive, test_media_archive
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 7
diff changeset
332 UploadInstance(_REMOTE, 'Knee/T1/IM-0001-0001.dcm')
f8d781d1d267 test_changes, test_archive, test_media_archive
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 7
diff changeset
333 UploadInstance(_REMOTE, 'Knee/T2/IM-0001-0001.dcm')
f8d781d1d267 test_changes, test_archive, test_media_archive
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 7
diff changeset
334
f8d781d1d267 test_changes, test_archive, test_media_archive
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 7
diff changeset
335 z = GetArchive(_REMOTE, '/patients/%s/archive' % DoGet(_REMOTE, '/patients')[0])
f8d781d1d267 test_changes, test_archive, test_media_archive
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 7
diff changeset
336 self.assertEqual(2, len(z.namelist()))
f8d781d1d267 test_changes, test_archive, test_media_archive
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 7
diff changeset
337
f8d781d1d267 test_changes, test_archive, test_media_archive
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 7
diff changeset
338 z = GetArchive(_REMOTE, '/studies/%s/archive' % DoGet(_REMOTE, '/studies')[0])
f8d781d1d267 test_changes, test_archive, test_media_archive
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 7
diff changeset
339 self.assertEqual(2, len(z.namelist()))
f8d781d1d267 test_changes, test_archive, test_media_archive
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 7
diff changeset
340
f8d781d1d267 test_changes, test_archive, test_media_archive
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 7
diff changeset
341 z = GetArchive(_REMOTE, '/series/%s/archive' % DoGet(_REMOTE, '/series')[0])
f8d781d1d267 test_changes, test_archive, test_media_archive
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 7
diff changeset
342 self.assertEqual(1, len(z.namelist()))
f8d781d1d267 test_changes, test_archive, test_media_archive
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 7
diff changeset
343
f8d781d1d267 test_changes, test_archive, test_media_archive
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 7
diff changeset
344 UploadInstance(_REMOTE, 'Brainix/Flair/IM-0001-0001.dcm')
f8d781d1d267 test_changes, test_archive, test_media_archive
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 7
diff changeset
345
f8d781d1d267 test_changes, test_archive, test_media_archive
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 7
diff changeset
346 z = GetArchive(_REMOTE, '/patients/%s/archive' % DoGet(_REMOTE, '/patients')[0])
f8d781d1d267 test_changes, test_archive, test_media_archive
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 7
diff changeset
347 self.assertEqual(2, len(z.namelist()))
f8d781d1d267 test_changes, test_archive, test_media_archive
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 7
diff changeset
348
f8d781d1d267 test_changes, test_archive, test_media_archive
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 7
diff changeset
349
f8d781d1d267 test_changes, test_archive, test_media_archive
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 7
diff changeset
350 def test_media_archive(self):
f8d781d1d267 test_changes, test_archive, test_media_archive
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 7
diff changeset
351 UploadInstance(_REMOTE, 'Knee/T1/IM-0001-0001.dcm')
f8d781d1d267 test_changes, test_archive, test_media_archive
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 7
diff changeset
352 UploadInstance(_REMOTE, 'Knee/T2/IM-0001-0001.dcm')
f8d781d1d267 test_changes, test_archive, test_media_archive
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 7
diff changeset
353
f8d781d1d267 test_changes, test_archive, test_media_archive
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 7
diff changeset
354 z = GetArchive(_REMOTE, '/patients/%s/media' % DoGet(_REMOTE, '/patients')[0])
f8d781d1d267 test_changes, test_archive, test_media_archive
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 7
diff changeset
355 self.assertEqual(3, len(z.namelist()))
f8d781d1d267 test_changes, test_archive, test_media_archive
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 7
diff changeset
356 self.assertTrue('IMAGES/IM0' in z.namelist())
f8d781d1d267 test_changes, test_archive, test_media_archive
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 7
diff changeset
357 self.assertTrue('IMAGES/IM1' in z.namelist())
f8d781d1d267 test_changes, test_archive, test_media_archive
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 7
diff changeset
358 self.assertTrue('DICOMDIR' in z.namelist())
f8d781d1d267 test_changes, test_archive, test_media_archive
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 7
diff changeset
359
f8d781d1d267 test_changes, test_archive, test_media_archive
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 7
diff changeset
360 try:
f8d781d1d267 test_changes, test_archive, test_media_archive
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 7
diff changeset
361 os.remove('/tmp/DICOMDIR')
f8d781d1d267 test_changes, test_archive, test_media_archive
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 7
diff changeset
362 except:
f8d781d1d267 test_changes, test_archive, test_media_archive
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 7
diff changeset
363 # The file does not exist
f8d781d1d267 test_changes, test_archive, test_media_archive
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 7
diff changeset
364 pass
f8d781d1d267 test_changes, test_archive, test_media_archive
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 7
diff changeset
365
f8d781d1d267 test_changes, test_archive, test_media_archive
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 7
diff changeset
366 z.extract('DICOMDIR', '/tmp')
f8d781d1d267 test_changes, test_archive, test_media_archive
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 7
diff changeset
367 a = subprocess.check_output([ 'dciodvfy', '/tmp/DICOMDIR' ],
f8d781d1d267 test_changes, test_archive, test_media_archive
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 7
diff changeset
368 stderr = subprocess.STDOUT).split('\n')
f8d781d1d267 test_changes, test_archive, test_media_archive
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 7
diff changeset
369 self.assertEqual(3, len(a))
f8d781d1d267 test_changes, test_archive, test_media_archive
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 7
diff changeset
370 self.assertTrue(a[0].startswith('Warning'))
f8d781d1d267 test_changes, test_archive, test_media_archive
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 7
diff changeset
371 self.assertEqual('BasicDirectory', a[1])
f8d781d1d267 test_changes, test_archive, test_media_archive
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 7
diff changeset
372 self.assertEqual('', a[2])
f8d781d1d267 test_changes, test_archive, test_media_archive
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 7
diff changeset
373
f8d781d1d267 test_changes, test_archive, test_media_archive
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 7
diff changeset
374 a = subprocess.check_output([ 'dcentvfy', '/tmp/DICOMDIR' ],
f8d781d1d267 test_changes, test_archive, test_media_archive
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 7
diff changeset
375 stderr = subprocess.STDOUT).split('\n')
f8d781d1d267 test_changes, test_archive, test_media_archive
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 7
diff changeset
376 self.assertEqual(1, len(a))
f8d781d1d267 test_changes, test_archive, test_media_archive
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 7
diff changeset
377 self.assertEqual('', a[0])
f8d781d1d267 test_changes, test_archive, test_media_archive
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 7
diff changeset
378
f8d781d1d267 test_changes, test_archive, test_media_archive
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 7
diff changeset
379 a = subprocess.check_output([ 'dcm2xml', '/tmp/DICOMDIR' ])
f8d781d1d267 test_changes, test_archive, test_media_archive
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 7
diff changeset
380 self.assertTrue(re.search('1.3.46.670589.11.17521.5.0.3124.2008081908590448738', a) != None)
f8d781d1d267 test_changes, test_archive, test_media_archive
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 7
diff changeset
381 self.assertTrue(re.search('1.3.46.670589.11.17521.5.0.3124.2008081909113806560', a) != None)
f8d781d1d267 test_changes, test_archive, test_media_archive
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 7
diff changeset
382
f8d781d1d267 test_changes, test_archive, test_media_archive
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 7
diff changeset
383 os.remove('/tmp/DICOMDIR')
10
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 8
diff changeset
384
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 8
diff changeset
385
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 8
diff changeset
386 def test_protection(self):
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 8
diff changeset
387 UploadInstance(_REMOTE, 'Knee/T1/IM-0001-0001.dcm')
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 8
diff changeset
388 UploadInstance(_REMOTE, 'Brainix/Flair/IM-0001-0001.dcm')
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 8
diff changeset
389 self.assertEqual(2, len(DoGet(_REMOTE, '/patients')))
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 8
diff changeset
390 a = DoGet(_REMOTE, '/patients')[0]
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 8
diff changeset
391 b = DoGet(_REMOTE, '/patients')[1]
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 8
diff changeset
392 self.assertEqual(0, DoGet(_REMOTE, '/patients/%s/protected' % a))
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 8
diff changeset
393 DoPut(_REMOTE, '/patients/%s/protected' % a, '0', 'text/plain')
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 8
diff changeset
394 self.assertEqual(0, DoGet(_REMOTE, '/patients/%s/protected' % a))
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 8
diff changeset
395 DoPut(_REMOTE, '/patients/%s/protected' % a, '1', 'text/plain')
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 8
diff changeset
396 self.assertEqual(1, DoGet(_REMOTE, '/patients/%s/protected' % a))
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 8
diff changeset
397 DoPut(_REMOTE, '/patients/%s/protected' % a, '0', 'text/plain')
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 8
diff changeset
398 self.assertEqual(0, DoGet(_REMOTE, '/patients/%s/protected' % a))
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 8
diff changeset
399
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 8
diff changeset
400
12
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 11
diff changeset
401 def test_raw_tags(self):
10
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 8
diff changeset
402 i = UploadInstance(_REMOTE, 'PrivateTags.dcm')['ID']
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 8
diff changeset
403
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 8
diff changeset
404 dicom = DoGet(_REMOTE, '/instances/%s/file' % i)
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 8
diff changeset
405 self.assertEqual('1a7c56cb02d6e742cc9c856a8ac182e3', ComputeMD5(dicom))
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 8
diff changeset
406
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 8
diff changeset
407 s = '/instances/%s/content/' % i
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 8
diff changeset
408
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 8
diff changeset
409 self.assertEqual('LOGIQBOOK', DoGet(_REMOTE, s + '0008-1010').strip())
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 8
diff changeset
410 self.assertRaises(Exception, lambda: DoGet(_REMOTE, s + '0008-1011'))
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 8
diff changeset
411
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 8
diff changeset
412 self.assertEqual('Abdomen', DoGet(_REMOTE, s + '7fe1-1001/0/7fe1-1008/0/7fe1-1057').strip())
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 8
diff changeset
413 self.assertEqual('cla_3c', DoGet(_REMOTE, s + '7fe1-1001/0/7fe1-1008/8/7fe1-1057').strip())
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 8
diff changeset
414
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 8
diff changeset
415 UploadInstance(_REMOTE, 'Brainix/Epi/IM-0001-0001.dcm')
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 8
diff changeset
416 UploadInstance(_REMOTE, 'Brainix/Flair/IM-0001-0001.dcm')
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 8
diff changeset
417 UploadInstance(_REMOTE, 'Knee/T1/IM-0001-0001.dcm')
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 8
diff changeset
418 UploadInstance(_REMOTE, 'Knee/T2/IM-0001-0001.dcm')
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 8
diff changeset
419
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 8
diff changeset
420 for i in DoGet(_REMOTE, '/instances'):
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 8
diff changeset
421 aid = DoGet(_REMOTE, '/instances/%s' % i)['MainDicomTags']['SOPInstanceUID']
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 8
diff changeset
422 self.assertEqual(aid, DoGet(_REMOTE, '/instances/%s/content/0008-0018' % i).replace(chr(0), ''))
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 8
diff changeset
423
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 8
diff changeset
424
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 8
diff changeset
425 def test_raw_tags_mdn(self):
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 8
diff changeset
426 # Bug reported by Cyril Paulus
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 8
diff changeset
427 i = UploadInstance(_REMOTE, 'PrivateMDNTags.dcm')['ID']
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 8
diff changeset
428 self.assertAlmostEqual(0.000027, DoGet(_REMOTE, '/instances/%s/content/7053-1000' % i))
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 8
diff changeset
429
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 8
diff changeset
430
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 8
diff changeset
431 def test_modify_instance(self):
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 8
diff changeset
432 i = UploadInstance(_REMOTE, 'PrivateTags.dcm')['ID']
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 8
diff changeset
433 modified = DoPost(_REMOTE, '/instances/%s/modify' % i,
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 8
diff changeset
434 json.dumps({
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 8
diff changeset
435 "Replace" : {
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 8
diff changeset
436 "PatientName" : "hello",
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 8
diff changeset
437 #"PatientID" : "world"
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 8
diff changeset
438 },
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 8
diff changeset
439 "Remove" : [ "StationName" ],
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 8
diff changeset
440 "RemovePrivateTags" : None
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 8
diff changeset
441 }),
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 8
diff changeset
442 'application/json')
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 8
diff changeset
443 j = DoPost(_REMOTE, '/instances', modified, 'application/dicom')['ID']
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 8
diff changeset
444
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 8
diff changeset
445 self.assertNotEqual('hello', DoGet(_REMOTE, '/instances/%s/content/0010-0010' % i).strip())
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 8
diff changeset
446 #self.assertNotEqual('world', DoGet(_REMOTE, '/instances/%s/content/0010-0020' % i).strip())
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 8
diff changeset
447 self.assertEqual('LOGIQBOOK', DoGet(_REMOTE, '/instances/%s/content/0008-1010' % i).strip())
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 8
diff changeset
448 DoGet(_REMOTE, '/instances/%s/content/6003-1010' % i) # Some private tag
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 8
diff changeset
449
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 8
diff changeset
450 self.assertEqual('hello', DoGet(_REMOTE, '/instances/%s/content/0010-0010' % j).strip())
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 8
diff changeset
451 #self.assertEqual('world', DoGet(_REMOTE, '/instances/%s/content/0010-0020' % j).strip())
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 8
diff changeset
452 self.assertRaises(Exception, lambda: DoGet(_REMOTE, '/instances/%s/content/0008-1010' % j))
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 8
diff changeset
453 self.assertRaises(Exception, lambda: DoGet(_REMOTE, '/instances/%s/content/6003-1010' % j))
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 8
diff changeset
454
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 8
diff changeset
455
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 8
diff changeset
456 def test_modify_series(self):
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 8
diff changeset
457 # Upload 4 images from the same series
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 8
diff changeset
458 for i in range(4):
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 8
diff changeset
459 UploadInstance(_REMOTE, 'Brainix/Epi/IM-0001-000%d.dcm' % (i + 1))
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 8
diff changeset
460
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 8
diff changeset
461 origSeries = DoGet(_REMOTE, '/series')[0]
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 8
diff changeset
462 newSeries = DoPost(_REMOTE, '/series/%s/modify' % origSeries,
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 8
diff changeset
463 '{"Replace":{"PatientName":"Jodogne"}}',
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 8
diff changeset
464 'application/json')['ID']
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 8
diff changeset
465
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 8
diff changeset
466 self.assertEqual(origSeries, DoGet(_REMOTE, '/series/%s' % newSeries)['ModifiedFrom'])
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 8
diff changeset
467 instances = DoGet(_REMOTE, '/series/%s' % newSeries)['Instances']
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 8
diff changeset
468 self.assertEqual(4, len(instances))
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 8
diff changeset
469 for i in instances:
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 8
diff changeset
470 j = DoGet(_REMOTE, '/instances/%s' % i)['ModifiedFrom']
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 8
diff changeset
471 self.assertEqual(newSeries, DoGet(_REMOTE, '/instances/%s' % i)['ParentSeries'])
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 8
diff changeset
472 self.assertEqual(origSeries, DoGet(_REMOTE, '/instances/%s' % j)['ParentSeries'])
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 8
diff changeset
473
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 8
diff changeset
474 self.assertEqual('Jodogne', DoGet(_REMOTE, '/instances/%s/content/0010-0010' % i).strip())
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 8
diff changeset
475 self.assertNotEqual('Jodogne', DoGet(_REMOTE, '/instances/%s/content/0010-0010' % j).strip())
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 8
diff changeset
476
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 8
diff changeset
477
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 8
diff changeset
478 def test_modify_study(self):
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 8
diff changeset
479 # Upload 4 images from the 2 series of the same study
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 8
diff changeset
480 for i in range(4):
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 8
diff changeset
481 UploadInstance(_REMOTE, 'Brainix/Flair/IM-0001-000%d.dcm' % (i + 1))
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 8
diff changeset
482 UploadInstance(_REMOTE, 'Brainix/Epi/IM-0001-000%d.dcm' % (i + 1))
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 8
diff changeset
483
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 8
diff changeset
484 origStudy = DoGet(_REMOTE, '/studies')[0]
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 8
diff changeset
485 newStudy = DoPost(_REMOTE, '/studies/%s/modify' % origStudy,
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 8
diff changeset
486 '{"Replace":{"PatientName":"Jodogne"}}',
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 8
diff changeset
487 'application/json')['ID']
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 8
diff changeset
488
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 8
diff changeset
489 self.assertEqual(origStudy, DoGet(_REMOTE, '/studies/%s' % newStudy)['ModifiedFrom'])
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 8
diff changeset
490 series = DoGet(_REMOTE, '/studies/%s' % newStudy)['Series']
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 8
diff changeset
491 self.assertEqual(2, len(series))
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 8
diff changeset
492 for s in series:
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 8
diff changeset
493 ss = DoGet(_REMOTE, '/series/%s' % s)['ModifiedFrom']
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 8
diff changeset
494 self.assertEqual(newStudy, DoGet(_REMOTE, '/series/%s' % s)['ParentStudy'])
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 8
diff changeset
495 self.assertEqual(origStudy, DoGet(_REMOTE, '/series/%s' % ss)['ParentStudy'])
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 8
diff changeset
496
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 8
diff changeset
497 instances = DoGet(_REMOTE, '/series/%s' % s)['Instances']
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 8
diff changeset
498 for i in instances:
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 8
diff changeset
499 j = DoGet(_REMOTE, '/instances/%s' % i)['ModifiedFrom']
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 8
diff changeset
500 self.assertEqual(s, DoGet(_REMOTE, '/instances/%s' % i)['ParentSeries'])
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 8
diff changeset
501 self.assertEqual(ss, DoGet(_REMOTE, '/instances/%s' % j)['ParentSeries'])
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 8
diff changeset
502
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 8
diff changeset
503 self.assertEqual('Jodogne', DoGet(_REMOTE, '/instances/%s/content/0010-0010' % i).strip())
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 8
diff changeset
504 self.assertNotEqual('Jodogne', DoGet(_REMOTE, '/instances/%s/content/0010-0010' % j).strip())
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 8
diff changeset
505
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 8
diff changeset
506
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 8
diff changeset
507 def test_anonymize_series(self):
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 8
diff changeset
508 # Upload 4 images from the same series
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 8
diff changeset
509 for i in range(4):
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 8
diff changeset
510 UploadInstance(_REMOTE, 'Brainix/Epi/IM-0001-000%d.dcm' % (i + 1))
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 8
diff changeset
511
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 8
diff changeset
512 origSeries = DoGet(_REMOTE, '/series')[0]
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 8
diff changeset
513 newSeries = DoPost(_REMOTE, '/series/%s/anonymize' % origSeries,
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 8
diff changeset
514 '{}',
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 8
diff changeset
515 'application/json')['ID']
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 8
diff changeset
516
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 8
diff changeset
517 self.assertEqual(origSeries, DoGet(_REMOTE, '/series/%s' % newSeries)['AnonymizedFrom'])
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 8
diff changeset
518 instances = DoGet(_REMOTE, '/series/%s' % newSeries)['Instances']
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 8
diff changeset
519 self.assertEqual(4, len(instances))
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 8
diff changeset
520 for i in instances:
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 8
diff changeset
521 j = DoGet(_REMOTE, '/instances/%s' % i)['AnonymizedFrom']
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 8
diff changeset
522 self.assertEqual(newSeries, DoGet(_REMOTE, '/instances/%s' % i)['ParentSeries'])
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 8
diff changeset
523 self.assertEqual(origSeries, DoGet(_REMOTE, '/instances/%s' % j)['ParentSeries'])
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 8
diff changeset
524
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 8
diff changeset
525 DoGet(_REMOTE, '/instances/%s/content/0008-1010' % j)
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 8
diff changeset
526 self.assertRaises(Exception, lambda: DoGet(_REMOTE, '/instances/%s/content/0008-1010' % i))
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 8
diff changeset
527
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 8
diff changeset
528
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 8
diff changeset
529 def test_anonymize_study(self):
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 8
diff changeset
530 # Upload 4 images from the 2 series of the same study
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 8
diff changeset
531 for i in range(4):
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 8
diff changeset
532 UploadInstance(_REMOTE, 'Brainix/Flair/IM-0001-000%d.dcm' % (i + 1))
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 8
diff changeset
533 UploadInstance(_REMOTE, 'Brainix/Epi/IM-0001-000%d.dcm' % (i + 1))
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 8
diff changeset
534
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 8
diff changeset
535 origStudy = DoGet(_REMOTE, '/studies')[0]
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 8
diff changeset
536 newStudy = DoPost(_REMOTE,'/studies/%s/anonymize' % origStudy,
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 8
diff changeset
537 '{"Replace":{"PatientName":"Jodogne"}}',
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 8
diff changeset
538 'application/json')['ID']
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 8
diff changeset
539
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 8
diff changeset
540 self.assertEqual(origStudy, DoGet(_REMOTE, '/studies/%s' % newStudy)['AnonymizedFrom'])
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 8
diff changeset
541 series = DoGet(_REMOTE, '/studies/%s' % newStudy)['Series']
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 8
diff changeset
542 self.assertEqual(2, len(series))
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 8
diff changeset
543 for s in series:
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 8
diff changeset
544 ss = DoGet(_REMOTE, '/series/%s' % s)['AnonymizedFrom']
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 8
diff changeset
545 self.assertEqual(newStudy, DoGet(_REMOTE, '/series/%s' % s)['ParentStudy'])
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 8
diff changeset
546 self.assertEqual(origStudy, DoGet(_REMOTE, '/series/%s' % ss)['ParentStudy'])
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 8
diff changeset
547
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 8
diff changeset
548 instances = DoGet(_REMOTE, '/series/%s' % s)['Instances']
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 8
diff changeset
549 for i in instances:
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 8
diff changeset
550 j = DoGet(_REMOTE, '/instances/%s' % i)['AnonymizedFrom']
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 8
diff changeset
551 self.assertEqual(s, DoGet(_REMOTE, '/instances/%s' % i)['ParentSeries'])
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 8
diff changeset
552 self.assertEqual(ss, DoGet(_REMOTE, '/instances/%s' % j)['ParentSeries'])
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 8
diff changeset
553
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 8
diff changeset
554 self.assertEqual('Jodogne', DoGet(_REMOTE, '/instances/%s/content/0010-0010' % i).strip())
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 8
diff changeset
555 self.assertNotEqual('Jodogne', DoGet(_REMOTE, '/instances/%s/content/0010-0010' % j).strip())
11
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 10
diff changeset
556
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 10
diff changeset
557
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 10
diff changeset
558
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 10
diff changeset
559 def test_storescu(self):
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 10
diff changeset
560 # Check emptiness
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 10
diff changeset
561 e = DoGet(_REMOTE, '/exports')
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 10
diff changeset
562 self.assertEqual(0, len(e['Exports']))
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 10
diff changeset
563 self.assertEqual(0, e['Last'])
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 10
diff changeset
564 self.assertTrue(e['Done'])
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 10
diff changeset
565 e = DoGet(_REMOTE, '/exports?last')
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 10
diff changeset
566 self.assertEqual(0, len(e['Exports']))
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 10
diff changeset
567 self.assertEqual(0, e['Last'])
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 10
diff changeset
568 self.assertTrue(e['Done'])
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 10
diff changeset
569
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 10
diff changeset
570 # Add 1 instance
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 10
diff changeset
571 i = UploadInstance(_REMOTE, 'DummyCT.dcm')['ID']
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 10
diff changeset
572 self.assertEqual(0, len(DoGet(_LOCAL, '/patients')))
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 10
diff changeset
573
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 10
diff changeset
574 # Export the instance
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 10
diff changeset
575 j = DoPost(_REMOTE, '/modalities/orthanctest/store', str(i), 'text/plain') # instance
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 10
diff changeset
576 self.assertEqual(1, len(DoGet(_LOCAL, '/patients')))
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 10
diff changeset
577 self.assertEqual(1, len(DoGet(_LOCAL, '/studies')))
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 10
diff changeset
578 self.assertEqual(1, len(DoGet(_LOCAL, '/series')))
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 10
diff changeset
579 self.assertEqual(1, len(DoGet(_LOCAL, '/instances')))
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 10
diff changeset
580
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 10
diff changeset
581 e = DoGet(_REMOTE, '/exports')
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 10
diff changeset
582 self.assertEqual(1, len(e['Exports']))
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 10
diff changeset
583 self.assertTrue(e['Done'])
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 10
diff changeset
584 self.assertEqual(e['Exports'][-1]['Seq'], e['Last'])
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 10
diff changeset
585 e = DoGet(_REMOTE, '/exports?limit=1')
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 10
diff changeset
586 self.assertEqual(1, len(e['Exports']))
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 10
diff changeset
587 self.assertTrue(e['Done'])
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 10
diff changeset
588 self.assertEqual(e['Exports'][-1]['Seq'], e['Last'])
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 10
diff changeset
589 e = DoGet(_REMOTE, '/exports?last')
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 10
diff changeset
590 self.assertEqual(1, len(e['Exports']))
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 10
diff changeset
591 self.assertTrue(e['Done'])
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 10
diff changeset
592 self.assertEqual(e['Exports'][-1]['Seq'], e['Last'])
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 10
diff changeset
593 seqInstance = e['Last']
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 10
diff changeset
594
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 10
diff changeset
595 # Export the series
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 10
diff changeset
596 j = DoPost(_REMOTE, '/modalities/orthanctest/store', 'f2635388-f01d497a-15f7c06b-ad7dba06-c4c599fe', 'text/plain')
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 10
diff changeset
597
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 10
diff changeset
598 e = DoGet(_REMOTE, '/exports')
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 10
diff changeset
599 self.assertEqual(2, len(e['Exports']))
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 10
diff changeset
600 self.assertTrue(e['Done'])
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 10
diff changeset
601 self.assertEqual(e['Exports'][-1]['Seq'], e['Last'])
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 10
diff changeset
602 seqSeries = e['Last']
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 10
diff changeset
603 self.assertNotEqual(seqInstance, seqSeries)
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 10
diff changeset
604 e = DoGet(_REMOTE, '/exports?limit=1&since=0')
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 10
diff changeset
605 self.assertEqual(1, len(e['Exports']))
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 10
diff changeset
606 self.assertFalse(e['Done'])
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 10
diff changeset
607 self.assertEqual(e['Exports'][-1]['Seq'], seqInstance)
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 10
diff changeset
608 e = DoGet(_REMOTE, '/exports?limit=1&since=' + str(seqInstance))
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 10
diff changeset
609 self.assertEqual(1, len(e['Exports']))
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 10
diff changeset
610 self.assertTrue(e['Done'])
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 10
diff changeset
611 self.assertEqual(e['Exports'][-1]['Seq'], seqSeries)
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 10
diff changeset
612 e = DoGet(_REMOTE, '/exports?last')
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 10
diff changeset
613 self.assertEqual(1, len(e['Exports']))
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 10
diff changeset
614 self.assertTrue(e['Done'])
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 10
diff changeset
615 self.assertEqual(e['Exports'][-1]['Seq'], seqSeries)
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 10
diff changeset
616
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 10
diff changeset
617 # Export the study
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 10
diff changeset
618 j = DoPost(_REMOTE, '/modalities/orthanctest/store', 'b9c08539-26f93bde-c81ab0d7-bffaf2cb-a4d0bdd0', 'text/plain')
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 10
diff changeset
619 seqStudy = DoGet(_REMOTE, '/exports')['Last']
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 10
diff changeset
620
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 10
diff changeset
621 # Export the patient
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 10
diff changeset
622 j = DoPost(_REMOTE, '/modalities/orthanctest/store', '6816cb19-844d5aee-85245eba-28e841e6-2414fae2', 'text/plain')
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 10
diff changeset
623 self.assertEqual(1, len(DoGet(_LOCAL, '/patients')))
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 10
diff changeset
624 self.assertEqual(1, len(DoGet(_LOCAL, '/studies')))
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 10
diff changeset
625 self.assertEqual(1, len(DoGet(_LOCAL, '/series')))
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 10
diff changeset
626 self.assertEqual(1, len(DoGet(_LOCAL, '/instances')))
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 10
diff changeset
627
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 10
diff changeset
628 e = DoGet(_REMOTE, '/exports')
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 10
diff changeset
629 self.assertEqual(4, len(e['Exports']))
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 10
diff changeset
630 self.assertTrue(e['Done'])
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 10
diff changeset
631 self.assertEqual(e['Exports'][-1]['Seq'], e['Last'])
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 10
diff changeset
632 seqPatient = e['Last']
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 10
diff changeset
633 self.assertNotEqual(seqInstance, seqSeries)
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 10
diff changeset
634 self.assertNotEqual(seqSeries, seqStudy)
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 10
diff changeset
635 self.assertNotEqual(seqStudy, seqPatient)
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 10
diff changeset
636 self.assertTrue(seqInstance < seqSeries)
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 10
diff changeset
637 self.assertTrue(seqSeries < seqStudy)
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 10
diff changeset
638 self.assertTrue(seqStudy < seqPatient)
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 10
diff changeset
639 e = DoGet(_REMOTE, '/exports?limit=1&since=0')
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 10
diff changeset
640 self.assertEqual(1, len(e['Exports']))
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 10
diff changeset
641 self.assertFalse(e['Done'])
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 10
diff changeset
642 self.assertEqual(e['Exports'][-1]['Seq'], seqInstance)
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 10
diff changeset
643 e = DoGet(_REMOTE, '/exports?limit=1&since=' + str(seqInstance))
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 10
diff changeset
644 self.assertEqual(1, len(e['Exports']))
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 10
diff changeset
645 self.assertFalse(e['Done'])
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 10
diff changeset
646 self.assertEqual(e['Exports'][-1]['Seq'], seqSeries)
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 10
diff changeset
647 e = DoGet(_REMOTE, '/exports?limit=1&since=' + str(seqSeries))
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 10
diff changeset
648 self.assertEqual(1, len(e['Exports']))
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 10
diff changeset
649 self.assertFalse(e['Done'])
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 10
diff changeset
650 self.assertEqual(e['Exports'][-1]['Seq'], seqStudy)
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 10
diff changeset
651 e = DoGet(_REMOTE, '/exports?limit=1&since=' + str(seqStudy))
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 10
diff changeset
652 self.assertEqual(1, len(e['Exports']))
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 10
diff changeset
653 self.assertTrue(e['Done'])
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 10
diff changeset
654 self.assertEqual(e['Exports'][-1]['Seq'], seqPatient)
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 10
diff changeset
655 e = DoGet(_REMOTE, '/exports?last')
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 10
diff changeset
656 self.assertEqual(1, len(e['Exports']))
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 10
diff changeset
657 self.assertTrue(e['Done'])
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 10
diff changeset
658 self.assertEqual(e['Exports'][-1]['Seq'], seqPatient)
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 10
diff changeset
659
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 10
diff changeset
660
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 10
diff changeset
661 # Check the content of the logged information
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 10
diff changeset
662 e = DoGet(_REMOTE, '/exports')['Exports']
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 10
diff changeset
663
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 10
diff changeset
664 if 'PatientID' in e[0]:
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 10
diff changeset
665 # Since Orthanc 0.8.6
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 10
diff changeset
666 patient = 'PatientID'
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 10
diff changeset
667 study = 'StudyInstanceUID'
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 10
diff changeset
668 series = 'SeriesInstanceUID'
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 10
diff changeset
669 instance = 'SOPInstanceUID'
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 10
diff changeset
670 else:
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 10
diff changeset
671 # Up to Orthanc 0.8.5
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 10
diff changeset
672 patient = 'PatientId'
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 10
diff changeset
673 study = 'StudyInstanceUid'
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 10
diff changeset
674 series = 'SeriesInstanceUid'
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 10
diff changeset
675 instance = 'SopInstanceUid'
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 10
diff changeset
676
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 10
diff changeset
677 for k in range(4):
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 10
diff changeset
678 self.assertTrue('Date' in e[k])
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 10
diff changeset
679 self.assertTrue('Seq' in e[k])
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 10
diff changeset
680 self.assertEqual('orthanctest', e[k]['RemoteModality'])
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 10
diff changeset
681
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 10
diff changeset
682 self.assertEqual(10, len(e[0]))
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 10
diff changeset
683 self.assertEqual('Instance', e[0]['ResourceType'])
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 10
diff changeset
684 self.assertEqual('66a662ce-7430e543-bad44d47-0dc5a943-ec7a538d', e[0]['ID'])
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 10
diff changeset
685 self.assertEqual('/instances/66a662ce-7430e543-bad44d47-0dc5a943-ec7a538d', e[0]['Path'])
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 10
diff changeset
686 self.assertEqual('1.2.840.113619.2.176.2025.1499492.7040.1171286242.109', e[0][instance])
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 10
diff changeset
687 self.assertEqual('1.2.840.113619.2.176.2025.1499492.7391.1171285944.394', e[0][series])
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 10
diff changeset
688 self.assertEqual('1.2.840.113619.2.176.2025.1499492.7391.1171285944.390', e[0][study])
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 10
diff changeset
689 self.assertEqual('ozp00SjY2xG', e[0][patient])
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 10
diff changeset
690
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 10
diff changeset
691 self.assertEqual(9, len(e[1]))
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 10
diff changeset
692 self.assertEqual('Series', e[1]['ResourceType'])
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 10
diff changeset
693 self.assertEqual('f2635388-f01d497a-15f7c06b-ad7dba06-c4c599fe', e[1]['ID'])
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 10
diff changeset
694 self.assertEqual('/series/f2635388-f01d497a-15f7c06b-ad7dba06-c4c599fe', e[1]['Path'])
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 10
diff changeset
695 self.assertEqual('1.2.840.113619.2.176.2025.1499492.7391.1171285944.394', e[1][series])
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 10
diff changeset
696 self.assertEqual('1.2.840.113619.2.176.2025.1499492.7391.1171285944.390', e[1][study])
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 10
diff changeset
697 self.assertEqual('ozp00SjY2xG', e[1][patient])
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 10
diff changeset
698
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 10
diff changeset
699 self.assertEqual(8, len(e[2]))
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 10
diff changeset
700 self.assertEqual('Study', e[2]['ResourceType'])
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 10
diff changeset
701 self.assertEqual('b9c08539-26f93bde-c81ab0d7-bffaf2cb-a4d0bdd0', e[2]['ID'])
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 10
diff changeset
702 self.assertEqual('/studies/b9c08539-26f93bde-c81ab0d7-bffaf2cb-a4d0bdd0', e[2]['Path'])
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 10
diff changeset
703 self.assertEqual('1.2.840.113619.2.176.2025.1499492.7391.1171285944.390', e[2][study])
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 10
diff changeset
704 self.assertEqual('ozp00SjY2xG', e[2][patient])
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 10
diff changeset
705
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 10
diff changeset
706 self.assertEqual(7, len(e[3]))
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 10
diff changeset
707 self.assertEqual('Patient', e[3]['ResourceType'])
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 10
diff changeset
708 self.assertEqual('6816cb19-844d5aee-85245eba-28e841e6-2414fae2', e[3]['ID'])
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 10
diff changeset
709 self.assertEqual('/patients/6816cb19-844d5aee-85245eba-28e841e6-2414fae2', e[3]['Path'])
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 10
diff changeset
710 self.assertEqual('ozp00SjY2xG', e[3][patient])
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 10
diff changeset
711
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 10
diff changeset
712 DropOrthanc(_REMOTE)
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 10
diff changeset
713 self.assertEqual(0, len(DoGet(_REMOTE, '/exports')['Exports']))
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 10
diff changeset
714
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 10
diff changeset
715
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 10
diff changeset
716 def test_store_peer(self):
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 10
diff changeset
717 self.assertEqual(0, len(DoGet(_LOCAL, '/exports')['Exports']))
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 10
diff changeset
718 self.assertEqual(0, len(DoGet(_REMOTE, '/exports')['Exports']))
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 10
diff changeset
719
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 10
diff changeset
720 i = UploadInstance(_REMOTE, 'DummyCT.dcm')['ID']
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 10
diff changeset
721 self.assertEqual(0, len(DoGet(_LOCAL, '/patients')))
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 10
diff changeset
722 self.assertEqual(1, len(DoGet(_REMOTE, '/patients')))
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 10
diff changeset
723
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 10
diff changeset
724 j = DoPost(_REMOTE, '/peers/peer/store', str(i), 'text/plain')
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 10
diff changeset
725 self.assertEqual(1, len(DoGet(_LOCAL, '/patients')))
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 10
diff changeset
726 self.assertEqual(1, len(DoGet(_REMOTE, '/patients')))
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 10
diff changeset
727
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 10
diff changeset
728 self.assertEqual(1, len(DoGet(_REMOTE, '/exports')['Exports']))
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 10
diff changeset
729
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 10
diff changeset
730 DropOrthanc(_REMOTE)
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 10
diff changeset
731 self.assertEqual(0, len(DoGet(_REMOTE, '/exports')['Exports']))
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 10
diff changeset
732
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 10
diff changeset
733
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 10
diff changeset
734 def test_bulk_storescu(self):
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 10
diff changeset
735 self.assertEqual(0, len(DoGet(_LOCAL, '/patients')))
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 10
diff changeset
736
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 10
diff changeset
737 a = UploadInstance(_REMOTE, 'Knee/T1/IM-0001-0001.dcm')
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 10
diff changeset
738 b = UploadInstance(_REMOTE, 'Knee/T2/IM-0001-0001.dcm')
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 10
diff changeset
739
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 10
diff changeset
740 j = DoPost(_REMOTE, '/modalities/orthanctest/store', [ a['ID'], b['ID'] ], 'application/json')
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 10
diff changeset
741 self.assertEqual(2, len(DoGet(_LOCAL, '/instances')))
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 10
diff changeset
742
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 10
diff changeset
743 DropOrthanc(_LOCAL)
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 10
diff changeset
744
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 10
diff changeset
745 # Send using patient's UUID
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 10
diff changeset
746 self.assertEqual(0, len(DoGet(_LOCAL, '/instances')))
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 10
diff changeset
747 j = DoPost(_REMOTE, '/modalities/orthanctest/store',
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 10
diff changeset
748 [ 'ca29faea-b6a0e17f-067743a1-8b778011-a48b2a17' ], 'application/json')
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 10
diff changeset
749 self.assertEqual(2, len(DoGet(_LOCAL, '/instances')))
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 10
diff changeset
750
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 10
diff changeset
751
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 10
diff changeset
752 def test_color(self):
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 10
diff changeset
753 i = UploadInstance(_REMOTE, 'ColorTestMalaterre.dcm')['ID']
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 10
diff changeset
754 im = GetImage(_REMOTE, '/instances/%s/preview' % i)
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 10
diff changeset
755 self.assertEqual("RGB", im.mode)
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 10
diff changeset
756 self.assertEqual(41, im.size[0])
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 10
diff changeset
757 self.assertEqual(41, im.size[1])
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 10
diff changeset
758
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 10
diff changeset
759 # http://effbot.org/zone/pil-comparing-images.htm
13
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 12
diff changeset
760 truth = Image.open(GetDatabasePath('ColorTestMalaterre.png'))
11
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 10
diff changeset
761 self.assertTrue(ImageChops.difference(im, truth).getbbox() is None)
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 10
diff changeset
762
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 10
diff changeset
763
12
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 11
diff changeset
764 def test_faking_ruby_put(self):
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 11
diff changeset
765 UploadInstance(_REMOTE, 'Knee/T1/IM-0001-0001.dcm')
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 11
diff changeset
766 UploadInstance(_REMOTE, 'Brainix/Flair/IM-0001-0001.dcm')
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 11
diff changeset
767 self.assertEqual(2, len(DoGet(_REMOTE, '/patients')))
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 11
diff changeset
768 a = DoGet(_REMOTE, '/patients')[0]
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 11
diff changeset
769 b = DoGet(_REMOTE, '/patients')[1]
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 11
diff changeset
770 self.assertEqual(0, DoGet(_REMOTE, '/patients/%s/protected' % a))
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 11
diff changeset
771 DoGet(_REMOTE, '/patients/%s/protected' % a, data = { '_method' : 'PUT' }, body = '0')
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 11
diff changeset
772 self.assertEqual(0, DoGet(_REMOTE, '/patients/%s/protected' % a))
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 11
diff changeset
773 DoGet(_REMOTE, '/patients/%s/protected' % a, data = { '_method' : 'PUT' }, body = '1')
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 11
diff changeset
774 self.assertEqual(1, DoGet(_REMOTE, '/patients/%s/protected' % a))
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 11
diff changeset
775 DoGet(_REMOTE, '/patients/%s/protected' % a, data = { '_method' : 'PUT' }, body = '0')
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 11
diff changeset
776 self.assertEqual(0, DoGet(_REMOTE, '/patients/%s/protected' % a))
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 11
diff changeset
777
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 11
diff changeset
778
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 11
diff changeset
779 def test_faking_ruby_delete(self):
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 11
diff changeset
780 UploadInstance(_REMOTE, 'Knee/T1/IM-0001-0001.dcm')
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 11
diff changeset
781 UploadInstance(_REMOTE, 'Brainix/Flair/IM-0001-0001.dcm')
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 11
diff changeset
782 self.assertEqual(2, len(DoGet(_REMOTE, '/patients')))
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 11
diff changeset
783 a = DoGet(_REMOTE, '/patients')[0]
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 11
diff changeset
784 b = DoGet(_REMOTE, '/patients')[1]
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 11
diff changeset
785 DoGet(_REMOTE, '/patients/%s' % a, data = { '_method' : 'DELETE' })
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 11
diff changeset
786 self.assertEqual(1, len(DoGet(_REMOTE, '/patients')))
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 11
diff changeset
787 DoGet(_REMOTE, '/patients/%s' % b, data = { '_method' : 'DELETE' })
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 11
diff changeset
788 self.assertEqual(0, len(DoGet(_REMOTE, '/patients')))
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 11
diff changeset
789
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 11
diff changeset
790
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 11
diff changeset
791 def test_faking_google_put(self):
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 11
diff changeset
792 UploadInstance(_REMOTE, 'Knee/T1/IM-0001-0001.dcm')
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 11
diff changeset
793 UploadInstance(_REMOTE, 'Brainix/Flair/IM-0001-0001.dcm')
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 11
diff changeset
794 self.assertEqual(2, len(DoGet(_REMOTE, '/patients')))
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 11
diff changeset
795 a = DoGet(_REMOTE, '/patients')[0]
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 11
diff changeset
796 b = DoGet(_REMOTE, '/patients')[1]
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 11
diff changeset
797 self.assertEqual(0, DoGet(_REMOTE, '/patients/%s/protected' % a))
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 11
diff changeset
798 DoPost(_REMOTE, '/patients/%s/protected' % a, headers = { 'X-HTTP-Method-Override' : 'PUT' }, data = '0')
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 11
diff changeset
799 self.assertEqual(0, DoGet(_REMOTE, '/patients/%s/protected' % a))
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 11
diff changeset
800 DoPost(_REMOTE, '/patients/%s/protected' % a, headers = { 'X-HTTP-Method-Override' : 'PUT' }, data = '1')
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 11
diff changeset
801 self.assertEqual(1, DoGet(_REMOTE, '/patients/%s/protected' % a))
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 11
diff changeset
802 DoPost(_REMOTE, '/patients/%s/protected' % a, headers = { 'X-HTTP-Method-Override' : 'PUT' }, data = '0')
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 11
diff changeset
803 self.assertEqual(0, DoGet(_REMOTE, '/patients/%s/protected' % a))
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 11
diff changeset
804
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 11
diff changeset
805
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 11
diff changeset
806 def test_faking_google_delete(self):
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 11
diff changeset
807 UploadInstance(_REMOTE, 'Knee/T1/IM-0001-0001.dcm')
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 11
diff changeset
808 UploadInstance(_REMOTE, 'Brainix/Flair/IM-0001-0001.dcm')
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 11
diff changeset
809 self.assertEqual(2, len(DoGet(_REMOTE, '/patients')))
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 11
diff changeset
810 a = DoGet(_REMOTE, '/patients')[0]
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 11
diff changeset
811 b = DoGet(_REMOTE, '/patients')[1]
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 11
diff changeset
812 DoPost(_REMOTE, '/patients/%s' % a, headers = { 'X-HTTP-Method-Override' : 'DELETE' })
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 11
diff changeset
813 self.assertEqual(1, len(DoGet(_REMOTE, '/patients')))
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 11
diff changeset
814 DoPost(_REMOTE, '/patients/%s' % b, headers = { 'X-HTTP-Method-Override' : 'DELETE' })
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 11
diff changeset
815 self.assertEqual(0, len(DoGet(_REMOTE, '/patients')))
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 11
diff changeset
816
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 11
diff changeset
817
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 11
diff changeset
818 def test_lua(self):
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 11
diff changeset
819 self.assertEqual(42, DoPost(_REMOTE, '/tools/execute-script', 'print(42)'))
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 11
diff changeset
820 self.assertTrue(IsDefinedInLua(_REMOTE, 'PrintRecursive'))
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 11
diff changeset
821 self.assertFalse(IsDefinedInLua(_REMOTE, 'HelloWorld'))
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 11
diff changeset
822
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 11
diff changeset
823
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 11
diff changeset
824 def test_metadata(self):
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 11
diff changeset
825 UploadInstance(_REMOTE, 'Knee/T1/IM-0001-0001.dcm')
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 11
diff changeset
826 p = DoGet(_REMOTE, '/patients')[0]
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 11
diff changeset
827 i = DoGet(_REMOTE, '/instances')[0]
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 11
diff changeset
828
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 11
diff changeset
829 m = DoGet(_REMOTE, '/patients/%s/metadata' % p)
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 11
diff changeset
830 self.assertEqual(1, len(m))
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 11
diff changeset
831 self.assertEqual('LastUpdate', m[0])
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 11
diff changeset
832
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 11
diff changeset
833 m = DoGet(_REMOTE, '/instances/%s/metadata' % i)
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 11
diff changeset
834 self.assertEqual(3, len(m))
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 11
diff changeset
835 self.assertTrue('IndexInSeries' in m)
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 11
diff changeset
836 self.assertTrue('ReceptionDate' in m)
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 11
diff changeset
837 self.assertTrue('RemoteAET' in m)
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 11
diff changeset
838
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 11
diff changeset
839 # Play with custom metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 11
diff changeset
840 DoPut(_REMOTE, '/patients/%s/metadata/5555' % p, 'coucou')
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 11
diff changeset
841 m = DoGet(_REMOTE, '/patients/%s/metadata' % p)
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 11
diff changeset
842 self.assertEqual(2, len(m))
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 11
diff changeset
843 self.assertTrue('LastUpdate' in m)
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 11
diff changeset
844 self.assertTrue('5555' in m)
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 11
diff changeset
845 self.assertEqual('coucou', DoGet(_REMOTE, '/patients/%s/metadata/5555' % p))
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 11
diff changeset
846 DoPut(_REMOTE, '/patients/%s/metadata/5555' % p, 'hello')
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 11
diff changeset
847 self.assertEqual('hello', DoGet(_REMOTE, '/patients/%s/metadata/5555' % p))
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 11
diff changeset
848 DoDelete(_REMOTE, '/patients/%s/metadata/5555' % p)
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 11
diff changeset
849 m = DoGet(_REMOTE, '/patients/%s/metadata' % p)
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 11
diff changeset
850 self.assertEqual(1, len(m))
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 11
diff changeset
851 self.assertTrue('LastUpdate' in m)
13
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 12
diff changeset
852
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 12
diff changeset
853
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 12
diff changeset
854 def test_statistics(self):
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 12
diff changeset
855 # Upload 16 instances
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 12
diff changeset
856 for i in range(4):
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 12
diff changeset
857 UploadInstance(_REMOTE, 'Brainix/Flair/IM-0001-000%d.dcm' % (i + 1))
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 12
diff changeset
858 UploadInstance(_REMOTE, 'Brainix/Epi/IM-0001-000%d.dcm' % (i + 1))
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 12
diff changeset
859 UploadInstance(_REMOTE, 'Knee/T1/IM-0001-000%d.dcm' % (i + 1))
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 12
diff changeset
860 UploadInstance(_REMOTE, 'Knee/T2/IM-0001-000%d.dcm' % (i + 1))
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 12
diff changeset
861
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 12
diff changeset
862 s = DoGet(_REMOTE, '/statistics')
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 12
diff changeset
863 self.assertEqual(16, s['CountInstances'])
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 12
diff changeset
864 self.assertEqual(2, s['CountPatients'])
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 12
diff changeset
865 self.assertEqual(2, s['CountStudies'])
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 12
diff changeset
866 self.assertEqual(4, s['CountSeries'])
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 12
diff changeset
867 d = int(s['TotalUncompressedSize'])
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 12
diff changeset
868
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 12
diff changeset
869 e = 0
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 12
diff changeset
870 for patient in DoGet(_REMOTE, '/patients'):
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 12
diff changeset
871 s = DoGet(_REMOTE, '/patients/%s/statistics' % patient)
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 12
diff changeset
872 self.assertEqual(8, s['CountInstances'])
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 12
diff changeset
873 self.assertEqual(1, s['CountStudies'])
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 12
diff changeset
874 self.assertEqual(2, s['CountSeries'])
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 12
diff changeset
875 e += int(s['UncompressedSize'])
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 12
diff changeset
876
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 12
diff changeset
877 for study in DoGet(_REMOTE, '/studies'):
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 12
diff changeset
878 s = DoGet(_REMOTE, '/studies/%s/statistics' % study)
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 12
diff changeset
879 self.assertEqual(8, s['CountInstances'])
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 12
diff changeset
880 self.assertEqual(2, s['CountSeries'])
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 12
diff changeset
881 e += int(s['UncompressedSize'])
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 12
diff changeset
882
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 12
diff changeset
883 for series in DoGet(_REMOTE, '/series'):
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 12
diff changeset
884 s = DoGet(_REMOTE, '/series/%s/statistics' % series)
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 12
diff changeset
885 self.assertEqual(4, s['CountInstances'])
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 12
diff changeset
886 e += int(s['UncompressedSize'])
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 12
diff changeset
887
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 12
diff changeset
888 self.assertEqual(3 * d, e)
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 12
diff changeset
889
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 12
diff changeset
890
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 12
diff changeset
891 def test_custom_attachment(self):
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 12
diff changeset
892 UploadInstance(_REMOTE, 'Brainix/Flair/IM-0001-0001.dcm')
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 12
diff changeset
893 patient = DoGet(_REMOTE, '/patients')[0]
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 12
diff changeset
894 instance = DoGet(_REMOTE, '/instances')[0]
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 12
diff changeset
895 size = int(DoGet(_REMOTE, '/patients/%s/statistics' % patient)['DiskSize'])
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 12
diff changeset
896 self.assertEqual(size, int(DoGet(_REMOTE, '/statistics')['TotalDiskSize']))
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 12
diff changeset
897
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 12
diff changeset
898 self.assertEqual(0, len(DoGet(_REMOTE, '/patients/%s/attachments' % patient)))
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 12
diff changeset
899 self.assertEqual(2, len(DoGet(_REMOTE, '/instances/%s/attachments' % instance)))
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 12
diff changeset
900 self.assertTrue('dicom' in DoGet(_REMOTE, '/instances/%s/attachments' % instance))
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 12
diff changeset
901 self.assertTrue('dicom-as-json' in DoGet(_REMOTE, '/instances/%s/attachments' % instance))
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 12
diff changeset
902
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 12
diff changeset
903 self.assertRaises(Exception, lambda: DoPut(_REMOTE, '/patients/%s/attachments/22' % patient, 'hello'))
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 12
diff changeset
904 hello = 'hellohellohellohellohellohellohellohellohello'
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 12
diff changeset
905 DoPut(_REMOTE, '/patients/%s/attachments/1025' % patient, hello)
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 12
diff changeset
906 self.assertEqual(int(DoGet(_REMOTE, '/patients/%s/statistics' % patient)['DiskSize']),
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 12
diff changeset
907 int(DoGet(_REMOTE, '/statistics')['TotalDiskSize']))
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 12
diff changeset
908 self.assertEqual(int(DoGet(_REMOTE, '/patients/%s/statistics' % patient)['DiskSize']),
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 12
diff changeset
909 size + int(DoGet(_REMOTE, '/patients/%s/attachments/1025/compressed-size' % patient)))
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 12
diff changeset
910
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 12
diff changeset
911 DoPut(_REMOTE, '/patients/%s/attachments/1026' % patient, 'world')
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 12
diff changeset
912 self.assertEqual(int(DoGet(_REMOTE, '/patients/%s/statistics' % patient)['DiskSize']),
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 12
diff changeset
913 int(DoGet(_REMOTE, '/statistics')['TotalDiskSize']))
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 12
diff changeset
914 self.assertEqual(int(DoGet(_REMOTE, '/patients/%s/statistics' % patient)['DiskSize']),
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 12
diff changeset
915 size +
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 12
diff changeset
916 int(DoGet(_REMOTE, '/patients/%s/attachments/1025/compressed-size' % patient)) +
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 12
diff changeset
917 int(DoGet(_REMOTE, '/patients/%s/attachments/1026/compressed-size' % patient)))
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 12
diff changeset
918
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 12
diff changeset
919 self.assertEqual(2, len(DoGet(_REMOTE, '/patients/%s/attachments' % patient)))
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 12
diff changeset
920 self.assertEqual(hello, DoGet(_REMOTE, '/patients/%s/attachments/1025/data' % patient))
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 12
diff changeset
921 self.assertEqual('world', DoGet(_REMOTE, '/patients/%s/attachments/1026/data' % patient))
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 12
diff changeset
922 DoPost(_REMOTE, '/patients/%s/attachments/1025/verify-md5' % patient)
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 12
diff changeset
923 DoPost(_REMOTE, '/patients/%s/attachments/1026/verify-md5' % patient)
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 12
diff changeset
924 DoPut(_REMOTE, '/patients/%s/attachments/1026' % patient, 'world2')
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 12
diff changeset
925 self.assertEqual('world2', DoGet(_REMOTE, '/patients/%s/attachments/1026/data' % patient))
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 12
diff changeset
926
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 12
diff changeset
927 self.assertRaises(Exception, lambda: DoDelete(_REMOTE, '/instances/%s/attachments/dicom' % instance))
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 12
diff changeset
928 DoDelete(_REMOTE, '/patients/%s/attachments/1025' % patient)
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 12
diff changeset
929 self.assertEqual(int(DoGet(_REMOTE, '/patients/%s/statistics' % patient)['DiskSize']),
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 12
diff changeset
930 int(DoGet(_REMOTE, '/statistics')['TotalDiskSize']))
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 12
diff changeset
931 self.assertEqual(int(DoGet(_REMOTE, '/patients/%s/statistics' % patient)['DiskSize']),
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 12
diff changeset
932 size + int(DoGet(_REMOTE, '/patients/%s/attachments/1026/compressed-size' % patient)))
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 12
diff changeset
933
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 12
diff changeset
934 self.assertEqual(1, len(DoGet(_REMOTE, '/patients/%s/attachments' % patient)))
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 12
diff changeset
935 DoDelete(_REMOTE, '/patients/%s/attachments/1026' % patient)
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 12
diff changeset
936 self.assertEqual(0, len(DoGet(_REMOTE, '/patients/%s/attachments' % patient)))
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 12
diff changeset
937
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 12
diff changeset
938 self.assertEqual(int(DoGet(_REMOTE, '/patients/%s/statistics' % patient)['DiskSize']), size)
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 12
diff changeset
939 self.assertEqual(size, int(DoGet(_REMOTE, '/statistics')['TotalDiskSize']))
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 12
diff changeset
940
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 12
diff changeset
941
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 12
diff changeset
942 def test_incoming_storescu(self):
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 12
diff changeset
943 self.assertEqual(0, len(DoGet(_REMOTE, '/patients')))
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 12
diff changeset
944 subprocess.check_call([ 'storescu', _REMOTE['Server'], str(_REMOTE['DicomPort']),
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 12
diff changeset
945 GetDatabasePath('ColorTestImageJ.dcm') ])
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 12
diff changeset
946 self.assertEqual(1, len(DoGet(_REMOTE, '/patients')))
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 12
diff changeset
947
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 12
diff changeset
948
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 12
diff changeset
949 def test_incoming_findscu(self):
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 12
diff changeset
950 def CallFindScu(args):
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 12
diff changeset
951 p = subprocess.Popen([ 'findscu', '-P', '-aec', _REMOTE['DicomAet'], '-aet', _LOCAL['DicomAet'],
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 12
diff changeset
952 _REMOTE['Server'], str(_REMOTE['DicomPort']) ] + args,
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 12
diff changeset
953 stderr=subprocess.PIPE)
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 12
diff changeset
954 return p.communicate()[1]
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 12
diff changeset
955
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 12
diff changeset
956 UploadInstance(_REMOTE, 'Multiframe.dcm')
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 12
diff changeset
957 UploadInstance(_REMOTE, 'ColorTestImageJ.dcm')
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 12
diff changeset
958
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 12
diff changeset
959 i = CallFindScu([ '-k', '0008,0052=PATIENT', '-k', '0010,0010' ])
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 12
diff changeset
960 patientNames = re.findall('\(0010,0010\).*?\[(.*?)\]', i)
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 12
diff changeset
961 self.assertEqual(2, len(patientNames))
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 12
diff changeset
962 self.assertTrue('Test Patient BG ' in patientNames)
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 12
diff changeset
963 self.assertTrue('Anonymized' in patientNames)
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 12
diff changeset
964
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 12
diff changeset
965 i = CallFindScu([ '-k', '0008,0052=SERIES', '-k', '0008,0021' ])
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 12
diff changeset
966 series = re.findall('\(0008,0021\).*?\[\s*(.*?)\s*\]', i)
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 12
diff changeset
967 self.assertEqual(2, len(series))
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 12
diff changeset
968 self.assertTrue('20070208' in series)
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 12
diff changeset
969 self.assertTrue('19980312' in series)
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 12
diff changeset
970
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 12
diff changeset
971 i = CallFindScu([ '-k', '0008,0052=SERIES', '-k', 'PatientName=Anonymized' ])
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 12
diff changeset
972 series = re.findall('\(0010,0010\).*?\[\s*(.*?)\s*\]', i)
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 12
diff changeset
973 self.assertEqual(1, len(series))
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 12
diff changeset
974
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 12
diff changeset
975 # Test the "CaseSentitivePN" flag (false by default)
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 12
diff changeset
976 i = CallFindScu([ '-k', '0008,0052=SERIES', '-k', 'PatientName=anonymized' ])
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 12
diff changeset
977 series = re.findall('\(0010,0010\).*?\[\s*(.*?)\s*\]', i)
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 12
diff changeset
978 self.assertEqual(1, len(series))
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 12
diff changeset
979
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 12
diff changeset
980
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 12
diff changeset
981 @unittest.skip("This test fails, to fix")
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 12
diff changeset
982 def test_incoming_movescu(self):
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 12
diff changeset
983 def CallMoveScu(args):
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 12
diff changeset
984 subprocess.check_call([ 'movescu',
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 12
diff changeset
985 '--move', _LOCAL['DicomAet'], # Target AET (i.e. storescp)
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 12
diff changeset
986 '--call', _REMOTE['DicomAet'], # Called AET (i.e. Orthanc)
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 12
diff changeset
987 '--aetitle', _LOCAL['DicomAet'], # Calling AET (i.e. storescp)
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 12
diff changeset
988 _REMOTE['Server'], str(_REMOTE['DicomPort']) ] + args,
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 12
diff changeset
989 stderr=subprocess.PIPE)
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 12
diff changeset
990
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 12
diff changeset
991 UploadInstance(_REMOTE, 'Multiframe.dcm')
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 12
diff changeset
992
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 12
diff changeset
993 self.assertEqual(0, len(DoGet(_LOCAL, '/patients')))
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 12
diff changeset
994 #CallMoveScu([ '--patient', '-k', '0008,0052=PATIENT', '-k', 'PatientID=none' ])
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 12
diff changeset
995 self.assertEqual(0, len(DoGet(_LOCAL, '/patients')))
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 12
diff changeset
996 CallMoveScu([ '--patient', '-k', '0008,0052=PATIENT', '-k', 'PatientID=12345678' ])
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 12
diff changeset
997 self.assertEqual(1, len(DoGet(_LOCAL, '/patients')))
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 12
diff changeset
998
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 12
diff changeset
999
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 12
diff changeset
1000 def test_findscu(self):
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 12
diff changeset
1001 i = UploadInstance(_REMOTE, 'DummyCT.dcm')['ID']
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 12
diff changeset
1002 j = UploadInstance(_REMOTE, 'Issue22.dcm')['ID']
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 12
diff changeset
1003 k = UploadInstance(_REMOTE, 'ColorTestImageJ.dcm')['ID']
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 12
diff changeset
1004 DoPost(_REMOTE, '/modalities/orthanctest/store', str(i), 'text/plain')
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 12
diff changeset
1005
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 12
diff changeset
1006 # Test the "find-patient" level
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 12
diff changeset
1007 p = DoPost(_REMOTE, '/modalities/orthanctest/find-patient', { })
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 12
diff changeset
1008 self.assertEqual(1, len(p))
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 12
diff changeset
1009 self.assertEqual('ozp00SjY2xG', p[0]['PatientID'])
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 12
diff changeset
1010
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 12
diff changeset
1011 # Test wildcards constraints. The "LO" value representation
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 12
diff changeset
1012 # for PatientID is always case-sensitive, but the "PN" for
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 12
diff changeset
1013 # PatientName might depend on the implementation:
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 12
diff changeset
1014 # "GenerateConfigurationForTests.py" will force it to be case
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 12
diff changeset
1015 # insensitive (which was the default until Orthanc 0.8.6).
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 12
diff changeset
1016 p = DoPost(_REMOTE, '/modalities/orthanctest/find-patient', { 'PatientName' : 'K*' })
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 12
diff changeset
1017 self.assertEqual(1, len(p))
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 12
diff changeset
1018
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 12
diff changeset
1019 p = DoPost(_REMOTE, '/modalities/orthanctest/find-patient', { 'PatientName' : 'k*' })
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 12
diff changeset
1020 self.assertEqual(1, len(p))
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 12
diff changeset
1021
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 12
diff changeset
1022 p = DoPost(_REMOTE, '/modalities/orthanctest/find-patient', { 'PatientID' : 'ozp*' })
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 12
diff changeset
1023 self.assertEqual(1, len(p))
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 12
diff changeset
1024
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 12
diff changeset
1025 p = DoPost(_REMOTE, '/modalities/orthanctest/find-patient', { 'PatientID' : 'o?p*' })
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 12
diff changeset
1026 self.assertEqual(1, len(p))
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 12
diff changeset
1027
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 12
diff changeset
1028 p = DoPost(_REMOTE, '/modalities/orthanctest/find-patient', { 'PatientID' : '0?q*' })
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 12
diff changeset
1029 self.assertEqual(0, len(p))
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 12
diff changeset
1030
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 12
diff changeset
1031 p = DoPost(_REMOTE, '/modalities/orthanctest/find-patient', { 'PatientName' : 'B*' })
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 12
diff changeset
1032 self.assertEqual(0, len(p))
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 12
diff changeset
1033
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 12
diff changeset
1034 p = DoPost(_REMOTE, '/modalities/orthanctest/find-patient', { 'PatientName' : 'b*' })
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 12
diff changeset
1035 self.assertEqual(0, len(p))
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 12
diff changeset
1036
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 12
diff changeset
1037 DoPost(_REMOTE, '/modalities/orthanctest/store', str(j), 'text/plain')
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 12
diff changeset
1038 DoPost(_REMOTE, '/modalities/orthanctest/store', str(k), 'text/plain')
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 12
diff changeset
1039 DoPost(_REMOTE, '/modalities/orthanctest/find-patient', { })
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 12
diff changeset
1040 self.assertEqual(3, len(DoPost(_REMOTE, '/modalities/orthanctest/find-patient', { })))
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 12
diff changeset
1041
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 12
diff changeset
1042 p = DoPost(_REMOTE, '/modalities/orthanctest/find-patient', { 'PatientName' : 'A*' })
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 12
diff changeset
1043 self.assertEqual(2, len(p))
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 12
diff changeset
1044
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 12
diff changeset
1045 # Test the "find-study" level. This is the instance "ColorTestImageJ.dcm"
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 12
diff changeset
1046 s = DoPost(_REMOTE, '/modalities/orthanctest/find-study', { 'PatientID' : 'B9uTHKOZ' })
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 12
diff changeset
1047 self.assertEqual(1, len(s))
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 12
diff changeset
1048 self.assertEqual('20070208', s[0]['StudyDate'])
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 12
diff changeset
1049
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 12
diff changeset
1050 # Test range searches
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 12
diff changeset
1051 t = DoPost(_REMOTE, '/modalities/orthanctest/find-study', { 'PatientID' : 'B9uTHKOZ',
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 12
diff changeset
1052 'StudyDate' : '-20070101' })
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 12
diff changeset
1053 self.assertEqual(0, len(t))
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 12
diff changeset
1054
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 12
diff changeset
1055 t = DoPost(_REMOTE, '/modalities/orthanctest/find-study', { 'PatientID' : 'B9uTHKOZ',
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 12
diff changeset
1056 'StudyDate' : '20090101-' })
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 12
diff changeset
1057 self.assertEqual(0, len(t))
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 12
diff changeset
1058
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 12
diff changeset
1059 t = DoPost(_REMOTE, '/modalities/orthanctest/find-study', { 'PatientID' : 'B9uTHKOZ',
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 12
diff changeset
1060 'StudyDate' : '20070101-' })
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 12
diff changeset
1061 self.assertEqual(1, len(t))
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 12
diff changeset
1062
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 12
diff changeset
1063 t = DoPost(_REMOTE, '/modalities/orthanctest/find-study', { 'PatientID' : 'B9uTHKOZ',
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 12
diff changeset
1064 'StudyDate' : '-20090101' })
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 12
diff changeset
1065 self.assertEqual(1, len(t))
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 12
diff changeset
1066
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 12
diff changeset
1067 t = DoPost(_REMOTE, '/modalities/orthanctest/find-study', { 'PatientID' : 'B9uTHKOZ',
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 12
diff changeset
1068 'StudyDate' : '20070207-20070207' })
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 12
diff changeset
1069 self.assertEqual(0, len(t))
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 12
diff changeset
1070
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 12
diff changeset
1071 t = DoPost(_REMOTE, '/modalities/orthanctest/find-study', { 'PatientID' : 'B9uTHKOZ',
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 12
diff changeset
1072 'StudyDate' : '20070208-20070208' })
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 12
diff changeset
1073 self.assertEqual(1, len(t))
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 12
diff changeset
1074
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 12
diff changeset
1075 t = DoPost(_REMOTE, '/modalities/orthanctest/find-study', { 'PatientID' : 'B9uTHKOZ',
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 12
diff changeset
1076 'StudyDate' : '20070209-20070209' })
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 12
diff changeset
1077 self.assertEqual(0, len(t))
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 12
diff changeset
1078
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 12
diff changeset
1079 # Test the ModalitiesInStudy tag
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 12
diff changeset
1080 t = DoPost(_REMOTE, '/modalities/orthanctest/find-study', {
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 12
diff changeset
1081 'PatientID' : 'B9uTHKOZ',
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 12
diff changeset
1082 'ModalitiesInStudy' : 'US' })
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 12
diff changeset
1083 self.assertEqual(0, len(t))
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 12
diff changeset
1084
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 12
diff changeset
1085 t = DoPost(_REMOTE, '/modalities/orthanctest/find-study', {
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 12
diff changeset
1086 'PatientID' : 'B9uTHKOZ',
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 12
diff changeset
1087 'ModalitiesInStudy' : 'CT' })
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 12
diff changeset
1088 self.assertEqual(1, len(t))
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 12
diff changeset
1089
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 12
diff changeset
1090 t = DoPost(_REMOTE, '/modalities/orthanctest/find-study', {
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 12
diff changeset
1091 'PatientID' : 'B9uTHKOZ',
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 12
diff changeset
1092 'ModalitiesInStudy' : 'US\\CT' })
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 12
diff changeset
1093 self.assertEqual(1, len(t))
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 12
diff changeset
1094
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 12
diff changeset
1095 # Test the "find-series" level
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 12
diff changeset
1096 t = DoPost(_REMOTE, '/modalities/orthanctest/find-series', {
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 12
diff changeset
1097 'PatientID' : 'B9uTHKOZ',
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 12
diff changeset
1098 'StudyInstanceUID' : s[0]['StudyInstanceUID'] })
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 12
diff changeset
1099 self.assertEqual(1, len(t))
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 12
diff changeset
1100
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 12
diff changeset
1101 # Test "\" separator
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 12
diff changeset
1102 t = DoPost(_REMOTE, '/modalities/orthanctest/find-series', {
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 12
diff changeset
1103 'PatientID' : 'B9uTHKOZ',
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 12
diff changeset
1104 'StudyInstanceUID' : s[0]['StudyInstanceUID'],
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 12
diff changeset
1105 'Modality' : 'MR\\CT\\US' })
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 12
diff changeset
1106 self.assertEqual(1, len(t))
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 12
diff changeset
1107
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 12
diff changeset
1108 t = DoPost(_REMOTE, '/modalities/orthanctest/find-series', {
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 12
diff changeset
1109 'PatientID' : 'B9uTHKOZ',
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 12
diff changeset
1110 'StudyInstanceUID' : s[0]['StudyInstanceUID'],
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 12
diff changeset
1111 'Modality' : 'MR\\US' })
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 12
diff changeset
1112 self.assertEqual(0, len(t))
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 12
diff changeset
1113
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 12
diff changeset
1114
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 12
diff changeset
1115 def test_update_modalities(self):
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 12
diff changeset
1116 try:
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 12
diff changeset
1117 DoDelete(_REMOTE, '/modalities/toto')
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 12
diff changeset
1118 except:
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 12
diff changeset
1119 pass
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 12
diff changeset
1120 try:
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 12
diff changeset
1121 DoDelete(_REMOTE, '/modalities/tata')
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 12
diff changeset
1122 except:
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 12
diff changeset
1123 pass
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 12
diff changeset
1124 self.assertRaises(Exception, lambda: DoGet(_REMOTE, '/modalities/toto'))
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 12
diff changeset
1125 DoPut(_REMOTE, '/modalities/toto', [ "STORESCP", "localhost", 2000 ])
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 12
diff changeset
1126 DoPut(_REMOTE, '/modalities/tata', [ "STORESCP", "localhost", 2000, 'MedInria' ])
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 12
diff changeset
1127 self.assertRaises(Exception, lambda: DoPut(_REMOTE, '/modalities/toto', [ "STORESCP", "localhost", 2000, 'MedInriaaa' ]))
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 12
diff changeset
1128 self.assertTrue('store' in DoGet(_REMOTE, '/modalities/toto'))
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 12
diff changeset
1129 self.assertTrue('store' in DoGet(_REMOTE, '/modalities/tata'))
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 12
diff changeset
1130 DoDelete(_REMOTE, '/modalities/toto')
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 12
diff changeset
1131 DoDelete(_REMOTE, '/modalities/tata')
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 12
diff changeset
1132 self.assertRaises(Exception, lambda: DoGet(_REMOTE, '/modalities/toto'))
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 12
diff changeset
1133 self.assertRaises(Exception, lambda: DoGet(_REMOTE, '/modalities/tata'))
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 12
diff changeset
1134
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 12
diff changeset
1135
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 12
diff changeset
1136 def test_update_peers(self):
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 12
diff changeset
1137 # curl -X PUT http://localhost:8042/peers/toto -d '["http://localhost:8042/"]' -v
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 12
diff changeset
1138 try:
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 12
diff changeset
1139 DoDelete(_REMOTE, '/peers/toto')
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 12
diff changeset
1140 except:
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 12
diff changeset
1141 pass
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 12
diff changeset
1142 try:
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 12
diff changeset
1143 DoDelete(_REMOTE, '/peers/tata')
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 12
diff changeset
1144 except:
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 12
diff changeset
1145 pass
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 12
diff changeset
1146 self.assertRaises(Exception, lambda: DoGet(_REMOTE, '/peers/toto'))
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 12
diff changeset
1147 DoPut(_REMOTE, '/peers/toto', [ 'http://localhost:8042/' ])
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 12
diff changeset
1148 DoPut(_REMOTE, '/peers/tata', [ 'http://localhost:8042/', 'user', 'pass' ])
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 12
diff changeset
1149 self.assertRaises(Exception, lambda: DoPut(_REMOTE, '/peers/toto', [ 'http://localhost:8042/', 'a' ]))
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 12
diff changeset
1150 self.assertRaises(Exception, lambda: DoPut(_REMOTE, '/peers/toto', [ 'http://localhost:8042/', 'a', 'b', 'c' ]))
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 12
diff changeset
1151 self.assertTrue('store' in DoGet(_REMOTE, '/peers/toto'))
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 12
diff changeset
1152 self.assertTrue('store' in DoGet(_REMOTE, '/peers/tata'))
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 12
diff changeset
1153 DoDelete(_REMOTE, '/peers/toto')
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 12
diff changeset
1154 DoDelete(_REMOTE, '/peers/tata')
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 12
diff changeset
1155 self.assertRaises(Exception, lambda: DoGet(_REMOTE, '/peers/toto'))
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 12
diff changeset
1156 self.assertRaises(Exception, lambda: DoGet(_REMOTE, '/peers/tata'))
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 12
diff changeset
1157
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 12
diff changeset
1158
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 12
diff changeset
1159 def test_mesterhazy_modification(self):
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 12
diff changeset
1160 # When I modify a series ( eg. curl
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 12
diff changeset
1161 # http://localhost:8042/series/uidhere/modify -X POST -d
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 12
diff changeset
1162 # '{"Replace":{"SeriesDate":"19990101"}}' ) the modified
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 12
diff changeset
1163 # series is added to a new Study, instead of the existing
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 12
diff changeset
1164 # Study. Fixed in Orthanc 0.7.5
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 12
diff changeset
1165
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 12
diff changeset
1166 u = UploadInstance(_REMOTE, 'DummyCT.dcm')
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 12
diff changeset
1167 study = 'b9c08539-26f93bde-c81ab0d7-bffaf2cb-a4d0bdd0'
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 12
diff changeset
1168 series = 'f2635388-f01d497a-15f7c06b-ad7dba06-c4c599fe'
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 12
diff changeset
1169
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 12
diff changeset
1170 modified = DoPost(_REMOTE, '/series/%s/modify' % series,
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 12
diff changeset
1171 json.dumps({ "Replace" : { "SeriesDate" : "19990101" }}))
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 12
diff changeset
1172
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 12
diff changeset
1173 self.assertEqual(study, DoGet(_REMOTE, '/series/%s' % modified['ID']) ['ParentStudy'])
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 12
diff changeset
1174
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 12
diff changeset
1175
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 12
diff changeset
1176 def test_create(self):
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 12
diff changeset
1177 i = DoPost(_REMOTE, '/tools/create-dicom',
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 12
diff changeset
1178 json.dumps({
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 12
diff changeset
1179 'PatientName' : 'Jodogne',
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 12
diff changeset
1180 'Modality' : 'CT',
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 12
diff changeset
1181 'PixelData' : 'data:image/png;base64,iVBORw0KGgoAAAANSUhEUgAAAAUAAAAFCAYAAACNbyblAAAAHElEQVQI12P4//8/w38GIAXDIBKE0DHxgljNBAAO9TXL0Y4OHwAAAABJRU5ErkJggg==' # red dot in RGBA
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 12
diff changeset
1182 }))
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 12
diff changeset
1183
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 12
diff changeset
1184 self.assertEqual('Jodogne', DoGet(_REMOTE, '/instances/%s/content/PatientName' % i['ID']).strip())
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 12
diff changeset
1185 self.assertEqual('CT', DoGet(_REMOTE, '/instances/%s/content/Modality' % i['ID']).strip())
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 12
diff changeset
1186
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 12
diff changeset
1187 png = GetImage(_REMOTE, '/instances/%s/preview' % i['ID'])
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 12
diff changeset
1188 self.assertEqual((5, 5), png.size)
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 12
diff changeset
1189
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 12
diff changeset
1190
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 12
diff changeset
1191 def test_pilates(self):
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 12
diff changeset
1192 # "SCU failed error when accessing orthanc with osirix" by
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 12
diff changeset
1193 # Pilates Agentur (Mar 10, 2014 at 9:33 PM)
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 12
diff changeset
1194 i = UploadInstance(_REMOTE, 'PilatesArgenturGEUltrasoundOsiriX.dcm')['ID']
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 12
diff changeset
1195 self.assertEqual(0, len(DoGet(_LOCAL, '/patients')))
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 12
diff changeset
1196 j = DoPost(_REMOTE, '/modalities/orthanctest/store', str(i), 'text/plain')
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 12
diff changeset
1197 self.assertEqual(1, len(DoGet(_LOCAL, '/patients')))
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 12
diff changeset
1198
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 12
diff changeset
1199
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 12
diff changeset
1200 def test_shared_tags(self):
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 12
diff changeset
1201 a = UploadInstance(_REMOTE, 'Knee/T1/IM-0001-0001.dcm')['ID']
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 12
diff changeset
1202 b = UploadInstance(_REMOTE, 'Knee/T1/IM-0001-0002.dcm')['ID']
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 12
diff changeset
1203 p = DoGet(_REMOTE, '/patients')[0]
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 12
diff changeset
1204
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 12
diff changeset
1205 self.assertTrue('0010,0010' in DoGet(_REMOTE, '/patients/%s/shared-tags' % p))
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 12
diff changeset
1206 self.assertTrue('PatientName' in DoGet(_REMOTE, '/patients/%s/shared-tags?simplify' % p))
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 12
diff changeset
1207 self.assertTrue('0008,1030' in DoGet(_REMOTE, '/patients/%s/shared-tags' % p))
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 12
diff changeset
1208 self.assertTrue('StudyDescription' in DoGet(_REMOTE, '/patients/%s/shared-tags?simplify' % p))
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 12
diff changeset
1209 self.assertTrue('0008,103e' in DoGet(_REMOTE, '/patients/%s/shared-tags' % p))
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 12
diff changeset
1210 self.assertTrue('SeriesDescription' in DoGet(_REMOTE, '/patients/%s/shared-tags?simplify' % p))
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 12
diff changeset
1211 self.assertFalse('0008,0018' in DoGet(_REMOTE, '/patients/%s/shared-tags' % p))
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 12
diff changeset
1212 self.assertFalse('SOPInstanceUID' in DoGet(_REMOTE, '/patients/%s/shared-tags?simplify' % p))
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 12
diff changeset
1213
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 12
diff changeset
1214 self.assertTrue('0008,0018' in DoGet(_REMOTE, '/instances/%s/tags' % a))
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 12
diff changeset
1215 self.assertTrue('SOPInstanceUID' in DoGet(_REMOTE, '/instances/%s/tags?simplify' % a))
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 12
diff changeset
1216
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 12
diff changeset
1217
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 12
diff changeset
1218 def test_modules(self):
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 12
diff changeset
1219 a = UploadInstance(_REMOTE, 'Knee/T1/IM-0001-0001.dcm')['ID']
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 12
diff changeset
1220 p = DoGet(_REMOTE, '/patients')[0]
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 12
diff changeset
1221 s = DoGet(_REMOTE, '/studies')[0]
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 12
diff changeset
1222 t = DoGet(_REMOTE, '/series')[0]
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 12
diff changeset
1223
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 12
diff changeset
1224 self.assertTrue('0010,0010' in DoGet(_REMOTE, '/patients/%s/module' % p))
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 12
diff changeset
1225 self.assertTrue('PatientName' in DoGet(_REMOTE, '/patients/%s/module?simplify' % p))
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 12
diff changeset
1226 self.assertTrue('0010,0010' in DoGet(_REMOTE, '/studies/%s/module-patient' % p))
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 12
diff changeset
1227 self.assertTrue('PatientName' in DoGet(_REMOTE, '/studies/%s/module-patient?simplify' % p))
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 12
diff changeset
1228 self.assertTrue('0008,1030' in DoGet(_REMOTE, '/studies/%s/module' % s))
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 12
diff changeset
1229 self.assertTrue('StudyDescription' in DoGet(_REMOTE, '/studies/%s/module?simplify' % s))
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 12
diff changeset
1230 self.assertTrue('0008,103e' in DoGet(_REMOTE, '/series/%s/module' % p))
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 12
diff changeset
1231 self.assertTrue('SeriesDescription' in DoGet(_REMOTE, '/series/%s/module?simplify' % p))
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 12
diff changeset
1232 self.assertTrue('0008,0018' in DoGet(_REMOTE, '/instances/%s/module' % a))
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 12
diff changeset
1233 self.assertTrue('SOPInstanceUID' in DoGet(_REMOTE, '/instances/%s/module?simplify' % a))
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 12
diff changeset
1234
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 12
diff changeset
1235
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 12
diff changeset
1236 def test_auto_directory(self):
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 12
diff changeset
1237 a = UploadInstance(_REMOTE, 'Knee/T1/IM-0001-0001.dcm')['ID']
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 12
diff changeset
1238 self.assertTrue('now' in DoGet(_REMOTE, '/tools'))
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 12
diff changeset
1239 self.assertTrue('dicom-conformance' in DoGet(_REMOTE, '/tools'))
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 12
diff changeset
1240 self.assertTrue(len(DoGet(_REMOTE, '/tools/dicom-conformance')) > 1000)
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 12
diff changeset
1241 self.assertTrue('orthanctest' in DoGet(_REMOTE, '/modalities'))
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 12
diff changeset
1242 self.assertTrue('echo' in DoGet(_REMOTE, '/modalities/orthanctest'))
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 12
diff changeset
1243 self.assertTrue('find' in DoGet(_REMOTE, '/modalities/orthanctest'))
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 12
diff changeset
1244 self.assertTrue('find-instance' in DoGet(_REMOTE, '/modalities/orthanctest'))
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 12
diff changeset
1245 self.assertTrue('find-patient' in DoGet(_REMOTE, '/modalities/orthanctest'))
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 12
diff changeset
1246 self.assertTrue('find-series' in DoGet(_REMOTE, '/modalities/orthanctest'))
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 12
diff changeset
1247 self.assertTrue('find-study' in DoGet(_REMOTE, '/modalities/orthanctest'))
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 12
diff changeset
1248 self.assertTrue('store' in DoGet(_REMOTE, '/modalities/orthanctest'))
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 12
diff changeset
1249 self.assertTrue('store' in DoGet(_REMOTE, '/peers/peer'))
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 12
diff changeset
1250 self.assertTrue('matlab' in DoGet(_REMOTE, '/instances/%s/frames/0' % a))
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 12
diff changeset
1251 self.assertRaises(Exception, lambda: DoGet(_REMOTE, '/tools/nope'))
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 12
diff changeset
1252
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 12
diff changeset
1253
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 12
diff changeset
1254 def test_echo(self):
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 12
diff changeset
1255 DoPost(_REMOTE, '/modalities/orthanctest/echo')
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 12
diff changeset
1256
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 12
diff changeset
1257
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 12
diff changeset
1258 def test_xml(self):
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 12
diff changeset
1259 json = DoGet(_REMOTE, '/tools', headers = { 'accept' : 'application/json' })
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 12
diff changeset
1260 xml = minidom.parseString(DoGet(_REMOTE, '/tools', headers = { 'accept' : 'application/xml' }))
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 12
diff changeset
1261 items = xml.getElementsByTagName('root')[0].getElementsByTagName('item')
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 12
diff changeset
1262 self.assertEqual(len(items), len(json))
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 12
diff changeset
1263
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 12
diff changeset
1264 self.assertTrue('dicom-conformance' in json)
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 12
diff changeset
1265
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 12
diff changeset
1266 ok = False
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 12
diff changeset
1267 for i in items:
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 12
diff changeset
1268 if i.childNodes[0].data == 'dicom-conformance':
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 12
diff changeset
1269 ok = True
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 12
diff changeset
1270 self.assertTrue(ok)
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 12
diff changeset
1271
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 12
diff changeset
1272
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 12
diff changeset
1273 def test_issue_16(self):
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 12
diff changeset
1274 i = UploadInstance(_REMOTE, 'Issue16.dcm')['ID']
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 12
diff changeset
1275 t = DoGet(_REMOTE, '/instances/%s/tags?simplify' % i)['FrameIncrementPointer']
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 12
diff changeset
1276 self.assertEqual('0018,1063', t)
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 12
diff changeset
1277
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 12
diff changeset
1278
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 12
diff changeset
1279 def test_issue_22(self):
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 12
diff changeset
1280 s = UploadInstance(_REMOTE, 'Issue22.dcm')['ID']
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 12
diff changeset
1281 a = [
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 12
diff changeset
1282 "f804691f62197040438f4627c6b994f1", # Frame 0
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 12
diff changeset
1283 "c69eee9a51eea3e8611e82e578897254",
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 12
diff changeset
1284 "315666be83e2d0111c77bc0996d84901",
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 12
diff changeset
1285 "3e27aa959d911172c48a1436443c72b1",
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 12
diff changeset
1286 "958642c9e7e9d232d3869faff546058c",
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 12
diff changeset
1287 "5e7ea8e3e4230cae707d143481355c59",
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 12
diff changeset
1288 "eda37f83558d858a596175aed8b2ad47",
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 12
diff changeset
1289 "486713bd2895c4ecbe0e97715ac7f80a",
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 12
diff changeset
1290 "091ef729eb169e67da8a0faa9631f9a8",
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 12
diff changeset
1291 "5aa2b8c7ffe0a483efaa8e12417686ca",
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 12
diff changeset
1292 "e2f39e85896fe58876654b94cd0b5013",
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 12
diff changeset
1293 "6fd2129e4950abbe1be053bc814d5da8",
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 12
diff changeset
1294 "c3331a8ba7a757f3d423735ab7fa81f9",
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 12
diff changeset
1295 "746f808582156734dd6b6fdfd3a0b72c",
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 12
diff changeset
1296 "8075ea2b227a70c60ea6b7b75a6bb190",
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 12
diff changeset
1297 "806b8b3e300c615099c11a5ec23465aa",
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 12
diff changeset
1298 "7c836aa298ba6eef96434579af631a11",
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 12
diff changeset
1299 "a0357dc9f4f72d73a885c33d7c287446",
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 12
diff changeset
1300 "f25ba3be1cc7d7fad95706adc199ea7d",
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 12
diff changeset
1301 "8b114c526b8cbed6cad8a3248b7b480c",
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 12
diff changeset
1302 "44e6670f127e612a2b4aa60a0d207698",
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 12
diff changeset
1303 "b8945f90fe02facf2ace24ca1ecbe0a5",
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 12
diff changeset
1304 "95c796c2fa8f59018b15cf2987b1f79b",
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 12
diff changeset
1305 "ce0a51ab30224205b44920221dc27351", # Frame 23
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 12
diff changeset
1306 ]
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 12
diff changeset
1307
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 12
diff changeset
1308 self.assertEqual(24, len(DoGet(_REMOTE, '/instances/%s/frames' % s)))
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 12
diff changeset
1309 self.assertRaises(Exception, lambda: DoGet(_REMOTE, '/instances/%s/frames/24/preview' % s))
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 12
diff changeset
1310
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 12
diff changeset
1311 for i in range(len(a)):
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 12
diff changeset
1312 self.assertEqual(a[i], ComputeMD5(DoGet(_REMOTE, '/instances/%s/frames/%d/preview' % (s, i))))
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 12
diff changeset
1313
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 12
diff changeset
1314
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 12
diff changeset
1315 def test_issue_19(self):
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 12
diff changeset
1316 # This is an image with "YBR_FULL" photometric interpretation
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 12
diff changeset
1317 # gdcmconv -i /home/jodogne/DICOM/GdcmDatabase/US_DataSet/HDI5000_US/3EAF5E01 -w -o Issue19.dcm
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 12
diff changeset
1318
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 12
diff changeset
1319 a = UploadInstance(_REMOTE, 'Issue19.dcm')['ID']
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 12
diff changeset
1320 i = DoGet(_REMOTE, '/instances/941ad3c8-05d05b88-560459f9-0eae0e20-6cddd533/preview')
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 12
diff changeset
1321
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 12
diff changeset
1322 # eb5d156c3594497f589158a6c6f3ca51 <=> Unsupported.png
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 12
diff changeset
1323 self.assertEqual('eb5d156c3594497f589158a6c6f3ca51', ComputeMD5(i))
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 12
diff changeset
1324
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 12
diff changeset
1325
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 12
diff changeset
1326 def test_issue_37(self):
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 12
diff changeset
1327 # Same test for issues 35 and 37. Fixed in Orthanc 0.9.1
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 12
diff changeset
1328 u = UploadInstance(_REMOTE, 'Beaufix/IM-0001-0001.dcm')['ID']
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 12
diff changeset
1329
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 12
diff changeset
1330 a = DoPost(_REMOTE, '/tools/find', { 'Level' : 'Series',
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 12
diff changeset
1331 'CaseSensitive' : True,
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 12
diff changeset
1332 'Query' : { 'StationName' : 'SMR4-MP3' }})
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 12
diff changeset
1333 self.assertEqual(1, len(a))
14
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 13
diff changeset
1334
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 13
diff changeset
1335
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 13
diff changeset
1336 def test_rest_find(self):
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 13
diff changeset
1337 # Upload 8 instances
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 13
diff changeset
1338 for i in range(2):
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 13
diff changeset
1339 UploadInstance(_REMOTE, 'Brainix/Flair/IM-0001-000%d.dcm' % (i + 1))
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 13
diff changeset
1340 UploadInstance(_REMOTE, 'Brainix/Epi/IM-0001-000%d.dcm' % (i + 1))
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 13
diff changeset
1341 UploadInstance(_REMOTE, 'Knee/T1/IM-0001-000%d.dcm' % (i + 1))
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 13
diff changeset
1342 UploadInstance(_REMOTE, 'Knee/T2/IM-0001-000%d.dcm' % (i + 1))
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 13
diff changeset
1343
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 13
diff changeset
1344 a = DoPost(_REMOTE, '/tools/find', { 'Level' : 'Patient',
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 13
diff changeset
1345 'CaseSensitive' : False,
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 13
diff changeset
1346 'Query' : { 'PatientName' : '*n*' }})
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 13
diff changeset
1347 self.assertEqual(2, len(a))
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 13
diff changeset
1348
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 13
diff changeset
1349 a = DoPost(_REMOTE, '/tools/find', { 'Level' : 'Patient',
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 13
diff changeset
1350 'CaseSensitive' : True,
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 13
diff changeset
1351 'Query' : { 'PatientName' : '*n*' }})
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 13
diff changeset
1352 self.assertEqual(0, len(a))
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 13
diff changeset
1353
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 13
diff changeset
1354 a = DoPost(_REMOTE, '/tools/find', { 'Expand' : True,
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 13
diff changeset
1355 'Level' : 'Patient',
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 13
diff changeset
1356 'CaseSensitive' : False,
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 13
diff changeset
1357 'Query' : { 'PatientName' : '*ne*' }})
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 13
diff changeset
1358 self.assertEqual(1, len(a))
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 13
diff changeset
1359 self.assertEqual('20080822', a[0]['MainDicomTags']['PatientBirthDate'])
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 13
diff changeset
1360
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 13
diff changeset
1361 a = DoPost(_REMOTE, '/tools/find', { 'Level' : 'Patient',
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 13
diff changeset
1362 'CaseSensitive' : True,
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 13
diff changeset
1363 'Query' : { 'PatientName' : '*ne*' }})
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 13
diff changeset
1364 self.assertEqual(0, len(a))
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 13
diff changeset
1365
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 13
diff changeset
1366 a = DoPost(_REMOTE, '/tools/find', { 'Level' : 'Study',
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 13
diff changeset
1367 'CaseSensitive' : True,
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 13
diff changeset
1368 'Query' : { 'PatientName' : '*NE*' }})
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 13
diff changeset
1369 self.assertEqual(1, len(a))
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 13
diff changeset
1370
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 13
diff changeset
1371 a = DoPost(_REMOTE, '/tools/find', { 'Level' : 'Series',
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 13
diff changeset
1372 'CaseSensitive' : True,
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 13
diff changeset
1373 'Query' : { 'PatientName' : '*NE*' }})
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 13
diff changeset
1374 self.assertEqual(2, len(a))
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 13
diff changeset
1375
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 13
diff changeset
1376 a = DoPost(_REMOTE, '/tools/find', { 'Level' : 'Instance',
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 13
diff changeset
1377 'CaseSensitive' : True,
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 13
diff changeset
1378 'Query' : { 'PatientName' : '*NE*' }})
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 13
diff changeset
1379 self.assertEqual(4, len(a))
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 13
diff changeset
1380
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 13
diff changeset
1381 a = DoPost(_REMOTE, '/tools/find', { 'Level' : 'Patient', 'Query' : { }})
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 13
diff changeset
1382 self.assertEqual(2, len(a))
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 13
diff changeset
1383
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 13
diff changeset
1384 a = DoPost(_REMOTE, '/tools/find', { 'Level' : 'Study', 'Query' : { }})
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 13
diff changeset
1385 self.assertEqual(2, len(a))
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 13
diff changeset
1386
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 13
diff changeset
1387 a = DoPost(_REMOTE, '/tools/find', { 'Level' : 'Series', 'Query' : { }})
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 13
diff changeset
1388 self.assertEqual(4, len(a))
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 13
diff changeset
1389
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 13
diff changeset
1390 a = DoPost(_REMOTE, '/tools/find', { 'Level' : 'Instance', 'Query' : { }})
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 13
diff changeset
1391 self.assertEqual(8, len(a))
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 13
diff changeset
1392
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 13
diff changeset
1393
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 13
diff changeset
1394 def test_rest_query_retrieve(self):
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 13
diff changeset
1395 self.assertEqual(0, len(DoGet(_REMOTE, '/patients')))
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 13
diff changeset
1396
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 13
diff changeset
1397 # Upload 8 instances
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 13
diff changeset
1398 for i in range(2):
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 13
diff changeset
1399 UploadInstance(_REMOTE, 'Brainix/Flair/IM-0001-000%d.dcm' % (i + 1))
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 13
diff changeset
1400 UploadInstance(_REMOTE, 'Brainix/Epi/IM-0001-000%d.dcm' % (i + 1))
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 13
diff changeset
1401 UploadInstance(_REMOTE, 'Knee/T1/IM-0001-000%d.dcm' % (i + 1))
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 13
diff changeset
1402 UploadInstance(_REMOTE, 'Knee/T2/IM-0001-000%d.dcm' % (i + 1))
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 13
diff changeset
1403
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 13
diff changeset
1404 self.assertEqual(2, len(DoGet(_REMOTE, '/patients')))
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 13
diff changeset
1405 for p in DoGet(_REMOTE, '/patients'):
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 13
diff changeset
1406 DoPost(_REMOTE, '/modalities/orthanctest/store', p)
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 13
diff changeset
1407 DoDelete(_REMOTE, '/patients/%s' % p)
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 13
diff changeset
1408
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 13
diff changeset
1409 for q in DoGet(_REMOTE, '/queries'):
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 13
diff changeset
1410 DoDelete(_REMOTE, '/queries/%s' % q)
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 13
diff changeset
1411
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 13
diff changeset
1412 self.assertEqual(0, len(DoGet(_REMOTE, '/patients')))
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 13
diff changeset
1413 self.assertEqual(0, len(DoGet(_REMOTE, '/queries')))
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 13
diff changeset
1414 a = DoPost(_REMOTE, '/modalities/orthanctest/query', { 'Level' : 'Series',
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 13
diff changeset
1415 'Query' : { 'PatientName' : '*NE*' }})['ID']
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 13
diff changeset
1416 self.assertEqual(1, len(DoGet(_REMOTE, '/queries')))
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 13
diff changeset
1417
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 13
diff changeset
1418 b = DoGet(_REMOTE, '/queries/%s' % a)
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 13
diff changeset
1419 self.assertTrue('answers' in b)
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 13
diff changeset
1420 self.assertTrue('level' in b)
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 13
diff changeset
1421 self.assertTrue('modality' in b)
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 13
diff changeset
1422 self.assertTrue('query' in b)
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 13
diff changeset
1423 self.assertTrue('retrieve' in b)
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 13
diff changeset
1424 self.assertEqual('Series', DoGet(_REMOTE, '/queries/%s/level' % a))
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 13
diff changeset
1425 self.assertEqual('orthanctest', DoGet(_REMOTE, '/queries/%s/modality' % a))
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 13
diff changeset
1426
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 13
diff changeset
1427 q = DoGet(_REMOTE, '/queries/%s/query?simplify' % a)
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 13
diff changeset
1428 self.assertEqual(1, len(q))
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 13
diff changeset
1429 self.assertTrue('PatientName' in q)
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 13
diff changeset
1430 self.assertEqual('*NE*', q['PatientName'])
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 13
diff changeset
1431
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 13
diff changeset
1432 self.assertEqual(2, len(DoGet(_REMOTE, '/queries/%s/answers' % a)))
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 13
diff changeset
1433
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 13
diff changeset
1434 s = DoGet(_REMOTE, '/queries/%s/answers/0' % a)
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 13
diff changeset
1435 self.assertTrue('content' in s)
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 13
diff changeset
1436 self.assertTrue('retrieve' in s)
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 13
diff changeset
1437
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 13
diff changeset
1438 s = DoGet(_REMOTE, '/queries/%s/answers/0/content?simplify' % a)
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 13
diff changeset
1439 self.assertEqual('887', s['PatientID'])
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 13
diff changeset
1440 self.assertEqual('2.16.840.1.113669.632.20.121711.10000160881', s['StudyInstanceUID'])
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 13
diff changeset
1441
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 13
diff changeset
1442 self.assertEqual(0, len(DoGet(_REMOTE, '/patients')))
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 13
diff changeset
1443 DoPost(_REMOTE, '/queries/%s/answers/0/retrieve' % a, 'ORTHANC')
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 13
diff changeset
1444 self.assertEqual(1, len(DoGet(_REMOTE, '/patients')))
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 13
diff changeset
1445 self.assertEqual(1, len(DoGet(_REMOTE, '/studies')))
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 13
diff changeset
1446 self.assertEqual(1, len(DoGet(_REMOTE, '/series')))
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 13
diff changeset
1447 self.assertEqual(2, len(DoGet(_REMOTE, '/instances')))
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 13
diff changeset
1448
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 13
diff changeset
1449 DoPost(_REMOTE, '/queries/%s/answers/1/retrieve' % a, 'ORTHANC')
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 13
diff changeset
1450 self.assertEqual(1, len(DoGet(_REMOTE, '/patients')))
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 13
diff changeset
1451 self.assertEqual(1, len(DoGet(_REMOTE, '/studies')))
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 13
diff changeset
1452 self.assertEqual(2, len(DoGet(_REMOTE, '/series')))
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 13
diff changeset
1453 self.assertEqual(4, len(DoGet(_REMOTE, '/instances')))
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 13
diff changeset
1454
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 13
diff changeset
1455 DoDelete(_REMOTE, '/queries/%s' % a)
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 13
diff changeset
1456 self.assertEqual(0, len(DoGet(_REMOTE, '/queries')))
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 13
diff changeset
1457
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 13
diff changeset
1458
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 13
diff changeset
1459 def test_parent(self):
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 13
diff changeset
1460 u = UploadInstance(_REMOTE, 'DummyCT.dcm')['ID']
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 13
diff changeset
1461 patient = '6816cb19-844d5aee-85245eba-28e841e6-2414fae2'
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 13
diff changeset
1462 study = 'b9c08539-26f93bde-c81ab0d7-bffaf2cb-a4d0bdd0'
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 13
diff changeset
1463 series = 'f2635388-f01d497a-15f7c06b-ad7dba06-c4c599fe'
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 13
diff changeset
1464 instance = '66a662ce-7430e543-bad44d47-0dc5a943-ec7a538d'
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 13
diff changeset
1465 self.assertEqual(instance, u);
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 13
diff changeset
1466
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 13
diff changeset
1467 a = DoGet(_REMOTE, '/studies/%s/patient' % study)
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 13
diff changeset
1468 self.assertEqual('Patient', a['Type'])
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 13
diff changeset
1469 self.assertEqual(patient, a['ID'])
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 13
diff changeset
1470
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 13
diff changeset
1471 a = DoGet(_REMOTE, '/series/%s/patient' % series)
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 13
diff changeset
1472 self.assertEqual('Patient', a['Type'])
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 13
diff changeset
1473 self.assertEqual(patient, a['ID'])
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 13
diff changeset
1474
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 13
diff changeset
1475 a = DoGet(_REMOTE, '/series/%s/study' % series)
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 13
diff changeset
1476 self.assertEqual('Study', a['Type'])
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 13
diff changeset
1477 self.assertEqual(study, a['ID'])
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 13
diff changeset
1478
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 13
diff changeset
1479 a = DoGet(_REMOTE, '/instances/%s/patient' % instance)
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 13
diff changeset
1480 self.assertEqual('Patient', a['Type'])
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 13
diff changeset
1481 self.assertEqual(patient, a['ID'])
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 13
diff changeset
1482
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 13
diff changeset
1483 a = DoGet(_REMOTE, '/instances/%s/study' % instance)
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 13
diff changeset
1484 self.assertEqual('Study', a['Type'])
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 13
diff changeset
1485 self.assertEqual(study, a['ID'])
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 13
diff changeset
1486
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 13
diff changeset
1487 a = DoGet(_REMOTE, '/instances/%s/series' % instance)
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 13
diff changeset
1488 self.assertEqual('Series', a['Type'])
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 13
diff changeset
1489 self.assertEqual(series, a['ID'])
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 13
diff changeset
1490
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 13
diff changeset
1491
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 13
diff changeset
1492 def test_shanon(self):
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 13
diff changeset
1493 def Anonymize(instance, replacements = {}):
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 13
diff changeset
1494 return DoPost(_REMOTE, '/instances/%s/anonymize' % instance, { 'Replace' : replacements }, 'application/json')
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 13
diff changeset
1495
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 13
diff changeset
1496 self.assertEqual(0, len(DoGet(_REMOTE, '/instances')))
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 13
diff changeset
1497 u = UploadInstance(_REMOTE, 'DummyCT.dcm')['ID']
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 13
diff changeset
1498 self.assertEqual(1, len(DoGet(_REMOTE, '/instances')))
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 13
diff changeset
1499
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 13
diff changeset
1500 tags = [ 'PatientID', 'StudyInstanceUID', 'SeriesInstanceUID', 'SOPInstanceUID', 'DeidentificationMethod' ]
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 13
diff changeset
1501 ids = [ 'ozp00SjY2xG',
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 13
diff changeset
1502 '1.2.840.113619.2.176.2025.1499492.7391.1171285944.390',
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 13
diff changeset
1503 '1.2.840.113619.2.176.2025.1499492.7391.1171285944.394',
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 13
diff changeset
1504 '1.2.840.113619.2.176.2025.1499492.7040.1171286242.109' ]
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 13
diff changeset
1505
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 13
diff changeset
1506 a = ExtractDicomTags(Anonymize(u), tags)
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 13
diff changeset
1507 for i in range(4):
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 13
diff changeset
1508 self.assertNotEqual(ids[i], a[i])
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 13
diff changeset
1509 self.assertTrue(a[4].startswith('Orthanc'))
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 13
diff changeset
1510
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 13
diff changeset
1511 a = ExtractDicomTags(Anonymize(u, { 'PatientName' : 'toto' }), tags)
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 13
diff changeset
1512 for i in range(4):
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 13
diff changeset
1513 self.assertNotEqual(ids[i], a[i])
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 13
diff changeset
1514 self.assertFalse(a[4].startswith('Orthanc'))
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 13
diff changeset
1515
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 13
diff changeset
1516 a = ExtractDicomTags(Anonymize(u, { 'SOPInstanceUID' : 'instance' }), tags)
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 13
diff changeset
1517 self.assertEqual('instance', a[3])
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 13
diff changeset
1518 self.assertFalse(a[4].startswith('Orthanc'))
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 13
diff changeset
1519
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 13
diff changeset
1520 a = ExtractDicomTags(Anonymize(u, { 'SeriesInstanceUID' : 'series' }), tags)
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 13
diff changeset
1521 self.assertEqual('series', a[2])
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 13
diff changeset
1522 self.assertFalse(a[4].startswith('Orthanc'))
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 13
diff changeset
1523
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 13
diff changeset
1524 a = ExtractDicomTags(Anonymize(u, { 'StudyInstanceUID' : 'study' }), tags)
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 13
diff changeset
1525 self.assertEqual('study', a[1])
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 13
diff changeset
1526 self.assertFalse(a[4].startswith('Orthanc'))
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 13
diff changeset
1527
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 13
diff changeset
1528 a = ExtractDicomTags(Anonymize(u, { 'PatientID' : 'patient' }), tags)
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 13
diff changeset
1529 self.assertEqual('patient', a[0])
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 13
diff changeset
1530 self.assertFalse(a[4].startswith('Orthanc'))
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 13
diff changeset
1531
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 13
diff changeset
1532 a = ExtractDicomTags(Anonymize(u, { 'PatientID' : 'patient',
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 13
diff changeset
1533 'StudyInstanceUID' : 'study',
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 13
diff changeset
1534 'SeriesInstanceUID' : 'series',
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 13
diff changeset
1535 'SOPInstanceUID' : 'instance' }), tags)
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 13
diff changeset
1536 self.assertEqual('patient', a[0])
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 13
diff changeset
1537 self.assertFalse(a[4].startswith('Orthanc'))
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 13
diff changeset
1538
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 13
diff changeset
1539 self.assertEqual(1, len(DoGet(_REMOTE, '/instances')))
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 13
diff changeset
1540
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 13
diff changeset
1541
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 13
diff changeset
1542 def test_shanon_2(self):
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 13
diff changeset
1543 def Modify(instance, replacements = {}):
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 13
diff changeset
1544 return DoPost(_REMOTE, '/instances/%s/modify' % instance, { 'Replace' : replacements }, 'application/json')
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 13
diff changeset
1545
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 13
diff changeset
1546 self.assertEqual(0, len(DoGet(_REMOTE, '/instances')))
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 13
diff changeset
1547 u = UploadInstance(_REMOTE, 'DummyCT.dcm')['ID']
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 13
diff changeset
1548 self.assertEqual(1, len(DoGet(_REMOTE, '/instances')))
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 13
diff changeset
1549
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 13
diff changeset
1550 tags = [ 'PatientID', 'StudyInstanceUID', 'SeriesInstanceUID', 'SOPInstanceUID', 'DeidentificationMethod' ]
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 13
diff changeset
1551 ids = [ 'ozp00SjY2xG',
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 13
diff changeset
1552 '1.2.840.113619.2.176.2025.1499492.7391.1171285944.390',
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 13
diff changeset
1553 '1.2.840.113619.2.176.2025.1499492.7391.1171285944.394',
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 13
diff changeset
1554 '1.2.840.113619.2.176.2025.1499492.7040.1171286242.109' ]
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 13
diff changeset
1555
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 13
diff changeset
1556 a = ExtractDicomTags(Modify(u), tags)
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 13
diff changeset
1557 self.assertEqual(ids[0], a[0])
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 13
diff changeset
1558 self.assertEqual(ids[1], a[1])
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 13
diff changeset
1559 self.assertEqual(ids[2], a[2])
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 13
diff changeset
1560 self.assertNotEqual(ids[3], a[3])
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 13
diff changeset
1561 self.assertEqual(0, len(a[4]))
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 13
diff changeset
1562
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 13
diff changeset
1563 a = ExtractDicomTags(Modify(u, { 'SOPInstanceUID' : 'instance' }), tags)
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 13
diff changeset
1564 self.assertEqual(ids[0], a[0])
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 13
diff changeset
1565 self.assertEqual(ids[1], a[1])
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 13
diff changeset
1566 self.assertEqual(ids[2], a[2])
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 13
diff changeset
1567 self.assertEqual('instance', a[3])
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 13
diff changeset
1568
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 13
diff changeset
1569 a = ExtractDicomTags(Modify(u, { 'SeriesInstanceUID' : 'series' }), tags)
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 13
diff changeset
1570 self.assertEqual(ids[0], a[0])
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 13
diff changeset
1571 self.assertEqual(ids[1], a[1])
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 13
diff changeset
1572 self.assertEqual('series', a[2])
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 13
diff changeset
1573 self.assertNotEqual(ids[3], a[3])
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 13
diff changeset
1574
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 13
diff changeset
1575 a = ExtractDicomTags(Modify(u, { 'StudyInstanceUID' : 'study' }), tags)
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 13
diff changeset
1576 self.assertEqual(ids[0], a[0])
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 13
diff changeset
1577 self.assertEqual('study', a[1])
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 13
diff changeset
1578 self.assertNotEqual(ids[2], a[2])
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 13
diff changeset
1579 self.assertNotEqual(ids[3], a[3])
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 13
diff changeset
1580
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 13
diff changeset
1581 a = ExtractDicomTags(Modify(u, { 'PatientID' : 'patient' }), tags)
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 13
diff changeset
1582 self.assertEqual('patient', a[0])
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 13
diff changeset
1583 self.assertNotEqual(ids[1], a[1])
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 13
diff changeset
1584 self.assertNotEqual(ids[2], a[2])
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 13
diff changeset
1585 self.assertNotEqual(ids[3], a[3])
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 13
diff changeset
1586
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 13
diff changeset
1587 a = ExtractDicomTags(Modify(u, { 'PatientID' : 'patient',
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 13
diff changeset
1588 'StudyInstanceUID' : 'study',
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 13
diff changeset
1589 'SeriesInstanceUID' : 'series',
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 13
diff changeset
1590 'SOPInstanceUID' : 'instance' }), tags)
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 13
diff changeset
1591 self.assertEqual('patient', a[0])
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 13
diff changeset
1592 self.assertEqual('study', a[1])
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 13
diff changeset
1593 self.assertEqual('series', a[2])
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 13
diff changeset
1594 self.assertEqual('instance', a[3])
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 13
diff changeset
1595
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 13
diff changeset
1596 self.assertEqual(1, len(DoGet(_REMOTE, '/instances')))
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 13
diff changeset
1597
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 13
diff changeset
1598
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 13
diff changeset
1599 def test_instances_tags(self):
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 13
diff changeset
1600 a = UploadInstance(_REMOTE, 'Knee/T1/IM-0001-0001.dcm')['ID']
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 13
diff changeset
1601 b = UploadInstance(_REMOTE, 'Knee/T2/IM-0001-0001.dcm')['ID']
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 13
diff changeset
1602 #a = UploadInstance(_REMOTE, 'Cardiac/MR.X.1.2.276.0.7230010.3.1.4.2831157719.2256.1336386937.676343')['ID']
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 13
diff changeset
1603 #b = UploadInstance(_REMOTE, 'Cardiac/MR.X.1.2.276.0.7230010.3.1.4.2831157719.2256.1336386925.676329')['ID']
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 13
diff changeset
1604
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 13
diff changeset
1605 i = DoGet(_REMOTE, '/patients/%s/instances-tags?simplify' % DoGet(_REMOTE, '/patients')[0])
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 13
diff changeset
1606 self.assertEqual(2, len(i))
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 13
diff changeset
1607 self.assertEqual('887', i[i.keys()[0]]['PatientID'])
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 13
diff changeset
1608 self.assertEqual('887', i[i.keys()[1]]['PatientID'])
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 13
diff changeset
1609
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 13
diff changeset
1610 i = DoGet(_REMOTE, '/patients/%s/instances-tags?simplify' % DoGet(_REMOTE, '/studies')[0])
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 13
diff changeset
1611 self.assertEqual(2, len(i))
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 13
diff changeset
1612 self.assertEqual('887', i[i.keys()[0]]['PatientID'])
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 13
diff changeset
1613 self.assertEqual('887', i[i.keys()[1]]['PatientID'])
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 13
diff changeset
1614
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 13
diff changeset
1615 self.assertEqual(2, len(DoGet(_REMOTE, '/series')))
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 13
diff changeset
1616 i = DoGet(_REMOTE, '/patients/%s/instances-tags?simplify' % DoGet(_REMOTE, '/series')[0])
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 13
diff changeset
1617 self.assertEqual(1, len(i))
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 13
diff changeset
1618 self.assertEqual('887', i[i.keys()[0]]['PatientID'])
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 13
diff changeset
1619
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 13
diff changeset
1620 i = DoGet(_REMOTE, '/patients/%s/instances-tags?simplify' % DoGet(_REMOTE, '/series')[1])
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 13
diff changeset
1621 self.assertEqual(1, len(i))
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 13
diff changeset
1622 self.assertEqual('887', i[i.keys()[0]]['PatientID'])
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 13
diff changeset
1623
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 13
diff changeset
1624
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 13
diff changeset
1625 def test_lookup(self):
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 13
diff changeset
1626 a = DoPost(_REMOTE, '/tools/lookup', 'ozp00SjY2xG')
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 13
diff changeset
1627 self.assertEqual(0, len(a))
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 13
diff changeset
1628
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 13
diff changeset
1629 UploadInstance(_REMOTE, 'DummyCT.dcm')
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 13
diff changeset
1630
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 13
diff changeset
1631 a = DoPost(_REMOTE, '/tools/lookup', 'ozp00SjY2xG')
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 13
diff changeset
1632 self.assertEqual(1, len(a))
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 13
diff changeset
1633 self.assertEqual('Patient', a[0]['Type'])
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 13
diff changeset
1634 self.assertEqual('6816cb19-844d5aee-85245eba-28e841e6-2414fae2', a[0]['ID'])
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 13
diff changeset
1635 self.assertEqual('/patients/%s' % a[0]['ID'], a[0]['Path'])
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 13
diff changeset
1636
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 13
diff changeset
1637 a = DoPost(_REMOTE, '/tools/lookup', '1.2.840.113619.2.176.2025.1499492.7391.1171285944.390')
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 13
diff changeset
1638 self.assertEqual(1, len(a))
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 13
diff changeset
1639 self.assertEqual('Study', a[0]['Type'])
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 13
diff changeset
1640 self.assertEqual('b9c08539-26f93bde-c81ab0d7-bffaf2cb-a4d0bdd0', a[0]['ID'])
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 13
diff changeset
1641 self.assertEqual('/studies/%s' % a[0]['ID'], a[0]['Path'])
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 13
diff changeset
1642
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 13
diff changeset
1643 a = DoPost(_REMOTE, '/tools/lookup', '1.2.840.113619.2.176.2025.1499492.7391.1171285944.394')
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 13
diff changeset
1644 self.assertEqual(1, len(a))
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 13
diff changeset
1645 self.assertEqual('Series', a[0]['Type'])
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 13
diff changeset
1646 self.assertEqual('f2635388-f01d497a-15f7c06b-ad7dba06-c4c599fe', a[0]['ID'])
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 13
diff changeset
1647 self.assertEqual('/series/%s' % a[0]['ID'], a[0]['Path'])
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 13
diff changeset
1648
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 13
diff changeset
1649 a = DoPost(_REMOTE, '/tools/lookup', '1.2.840.113619.2.176.2025.1499492.7040.1171286242.109')
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 13
diff changeset
1650 self.assertEqual(1, len(a))
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 13
diff changeset
1651 self.assertEqual('Instance', a[0]['Type'])
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 13
diff changeset
1652 self.assertEqual('66a662ce-7430e543-bad44d47-0dc5a943-ec7a538d', a[0]['ID'])
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 13
diff changeset
1653 self.assertEqual('/instances/%s' % a[0]['ID'], a[0]['Path'])
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 13
diff changeset
1654
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 13
diff changeset
1655 DropOrthanc(_REMOTE)
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 13
diff changeset
1656 a = DoPost(_REMOTE, '/tools/lookup', '3113719P')
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 13
diff changeset
1657 self.assertEqual(0, len(a))
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 13
diff changeset
1658