Mercurial > hg > orthanc-tests
annotate Tests/Tests.py @ 234:93cd4fdd4a67
test_anonymize_relationships_4
| author | Sebastien Jodogne <s.jodogne@gmail.com> |
|---|---|
| date | Fri, 05 Apr 2019 17:04:37 +0200 |
| parents | ce0b19a2c807 |
| children | 9929e4af2b7a |
| rev | line source |
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| 22 | 1 #!/usr/bin/env python |
| 2 # -*- coding: utf-8 -*- | |
| 3 | |
| 4 | |
| 3 | 5 # Orthanc - A Lightweight, RESTful DICOM Store |
| 73 | 6 # Copyright (C) 2012-2016 Sebastien Jodogne, Medical Physics |
| 3 | 7 # Department, University Hospital of Liege, Belgium |
| 195 | 8 # Copyright (C) 2017-2019 Osimis S.A., Belgium |
| 3 | 9 # |
| 10 # This program is free software: you can redistribute it and/or | |
| 11 # modify it under the terms of the GNU General Public License as | |
| 12 # published by the Free Software Foundation, either version 3 of the | |
| 13 # License, or (at your option) any later version. | |
| 14 # | |
| 15 # This program is distributed in the hope that it will be useful, but | |
| 16 # WITHOUT ANY WARRANTY; without even the implied warranty of | |
| 17 # MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU | |
| 18 # General Public License for more details. | |
| 19 # | |
| 20 # You should have received a copy of the GNU General Public License | |
| 21 # along with this program. If not, see <http://www.gnu.org/licenses/>. | |
| 22 | |
| 23 | |
|
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24 import base64 |
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25 import copy |
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26 import pprint |
| 14 | 27 import tempfile |
| 3 | 28 import unittest |
| 29 | |
| 11 | 30 from PIL import ImageChops |
| 3 | 31 from Toolbox import * |
| 13 | 32 from xml.dom import minidom |
| 3 | 33 |
| 34 _LOCAL = None | |
| 35 _REMOTE = None | |
| 36 | |
| 37 | |
| 38 def SetOrthancParameters(local, remote): | |
| 39 global _LOCAL, _REMOTE | |
| 40 _LOCAL = local | |
| 41 _REMOTE = remote | |
| 42 | |
| 43 | |
| 14 | 44 def ExtractDicomTags(rawDicom, tags): |
| 45 with tempfile.NamedTemporaryFile(delete = True) as f: | |
| 46 f.write(rawDicom) | |
| 47 f.flush() | |
| 45 | 48 data = subprocess.check_output([ FindExecutable('dcm2xml'), f.name ]) |
| 14 | 49 |
| 50 result = [] | |
| 51 for tag in tags: | |
| 52 match = re.search('<element[^>]+name="%s">([^>]*)</element>' % tag, data) | |
| 53 if match == None: | |
| 54 result.append('') | |
| 55 else: | |
| 56 result.append(match.group(1)) | |
| 57 | |
| 58 return result | |
| 59 | |
| 60 | |
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61 def CompareLists(a, b): |
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62 if len(a) != len(b): |
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63 return False |
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64 |
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65 for i in range(len(a)): |
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66 d = a[i] - b[i] |
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67 if abs(d) >= 0.51: # Add some tolerance for rounding errors |
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68 return False |
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69 |
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70 return True |
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71 |
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72 |
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73 def CompareTags(a, b, tagsToIgnore): |
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74 for i in tagsToIgnore: |
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75 if i in a: |
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76 del a[i] |
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77 if i in b: |
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78 del b[i] |
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79 |
| 123 | 80 if a.keys() == b.keys(): |
| 81 return True | |
| 82 else: | |
| 83 print('Mismatch in tags: %s' % str(set(a.keys()) ^ set(b.keys()))) | |
| 84 return False | |
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80
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85 |
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86 |
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87 def CallFindScu(args): |
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88 p = subprocess.Popen([ FindExecutable('findscu'), |
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89 '-P', '-aec', _REMOTE['DicomAet'], '-aet', _LOCAL['DicomAet'], |
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90 _REMOTE['Server'], str(_REMOTE['DicomPort']) ] + args, |
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91 stderr=subprocess.PIPE) |
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92 return p.communicate()[1] |
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93 |
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94 |
| 142 | 95 def GetMoveScuCommand(): |
| 96 return [ | |
| 97 FindExecutable('movescu'), | |
| 98 '--move', _LOCAL['DicomAet'], # Target AET (i.e. storescp) | |
| 99 '--call', _REMOTE['DicomAet'], # Called AET (i.e. Orthanc) | |
| 100 '--aetitle', _LOCAL['DicomAet'], # Calling AET (i.e. storescp) | |
| 101 _REMOTE['Server'], | |
| 102 str(_REMOTE['DicomPort']) | |
| 103 ] | |
| 104 | |
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105 |
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106 def CallMoveScu(args): |
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107 try: |
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108 subprocess.check_call(GetMoveScuCommand() + args, |
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109 stderr=subprocess.PIPE) |
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110 except subprocess.CalledProcessError as e: |
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111 # The error code "69" corresponds to "EXITCODE_CMOVE_ERROR", |
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112 # that has been introduced in DCMTK 3.6.2. This error code is |
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113 # expected by some tests that try and C-MOVE non-existing |
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114 # DICOM instances. |
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115 # https://groups.google.com/d/msg/orthanc-users/DCRc5NeSCbM/DG-pSWj-BwAJ |
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116 if e.returncode != 69: |
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117 raise e |
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118 |
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119 |
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120 def GenerateTestSequence(): |
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121 return [ |
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122 { |
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123 'StudyDescription': 'Hello^', |
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124 'ReferencedStudySequence' : [ |
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125 { |
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126 'StudyDescription': 'Toto', |
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127 }, |
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128 { |
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129 'StudyDescription': 'Tata', |
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130 }, |
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131 ] |
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132 }, |
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133 { |
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134 'StudyDescription': 'Sébastien^', |
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135 'StudyDate' : '19700202', |
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136 } |
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137 ] |
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138 |
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139 |
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140 |
| 15 | 141 |
| 3 | 142 class Orthanc(unittest.TestCase): |
| 143 def setUp(self): | |
| 83 | 144 if (sys.version_info >= (3, 0)): |
| 145 # Remove annoying warnings about unclosed socket in Python 3 | |
| 146 import warnings | |
| 147 warnings.simplefilter("ignore", ResourceWarning) | |
| 148 | |
| 3 | 149 DropOrthanc(_LOCAL) |
| 150 DropOrthanc(_REMOTE) | |
| 174 | 151 UninstallLuaCallbacks(_REMOTE) |
| 45 | 152 #print "In test", self._testMethodName |
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44
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153 |
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154 def AssertSameImages(self, truth, url): |
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155 im = GetImage(_REMOTE, url) |
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156 self.assertTrue(CompareLists(truth, im.getdata())) |
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157 |
| 3 | 158 |
| 159 def test_system(self): | |
| 177 | 160 self.assertTrue('Version' in DoGet(_REMOTE, '/system')) |
| 161 self.assertEqual('0', DoGet(_REMOTE, '/statistics')['TotalDiskSize']) | |
| 162 self.assertEqual('0', DoGet(_REMOTE, '/statistics')['TotalUncompressedSize']) | |
| 163 | |
| 164 systemInfo = DoGet(_REMOTE, '/system') | |
| 165 if systemInfo["Version"] == "mainline": | |
| 166 print "Skipping version checks since you're currently in mainline" | |
| 167 return | |
| 168 | |
| 173 | 169 self.assertTrue(IsOrthancVersionAbove(_LOCAL, 0, 8, 6)) |
| 170 self.assertFalse(IsOrthancVersionAbove(_LOCAL, 0, 8, 7)) | |
| 171 self.assertTrue(IsOrthancVersionAbove(_LOCAL, 0, 7, 6)) | |
| 172 self.assertFalse(IsOrthancVersionAbove(_LOCAL, 0, 9, 6)) | |
| 173 self.assertFalse(IsOrthancVersionAbove(_LOCAL, 1, 8, 6)) | |
| 3 | 174 |
| 175 def test_upload(self): | |
| 173 | 176 self.assertEqual('0', DoGet(_REMOTE, '/statistics')['TotalDiskSize']) |
| 177 self.assertEqual('0', DoGet(_REMOTE, '/statistics')['TotalUncompressedSize']) | |
| 178 | |
| 179 sizeDummyCT = 2472 | |
| 180 sizeOverwrite = 2476 | |
| 181 instance = '66a662ce-7430e543-bad44d47-0dc5a943-ec7a538d' | |
| 182 | |
| 3 | 183 u = UploadInstance(_REMOTE, 'DummyCT.dcm') |
| 183 | 184 self.assertEqual(instance, u['ID']) |
| 3 | 185 self.assertEqual('Success', u['Status']) |
| 173 | 186 |
| 183 | 187 if True: |
| 188 # New test for Orthanc 1.4.3 | |
| 189 self.assertEqual('f2635388-f01d497a-15f7c06b-ad7dba06-c4c599fe', u['ParentSeries']) | |
| 190 self.assertEqual('b9c08539-26f93bde-c81ab0d7-bffaf2cb-a4d0bdd0', u['ParentStudy']) | |
| 191 self.assertEqual('6816cb19-844d5aee-85245eba-28e841e6-2414fae2', u['ParentPatient']) | |
| 192 | |
| 173 | 193 j = int(DoGet(_REMOTE, '/instances/%s/attachments/dicom-as-json/size' % instance)) |
| 194 s = sizeDummyCT + j | |
| 195 self.assertEqual('%d' % s, DoGet(_REMOTE, '/statistics')['TotalDiskSize']) | |
| 196 self.assertEqual('%d' % s, DoGet(_REMOTE, '/statistics')['TotalUncompressedSize']) | |
| 197 | |
| 3 | 198 u = UploadInstance(_REMOTE, 'DummyCT.dcm') |
| 199 self.assertEqual(1, len(DoGet(_REMOTE, '/patients'))) | |
| 200 self.assertEqual(1, len(DoGet(_REMOTE, '/studies'))) | |
| 201 self.assertEqual(1, len(DoGet(_REMOTE, '/series'))) | |
| 202 self.assertEqual(1, len(DoGet(_REMOTE, '/instances'))) | |
| 173 | 203 self.assertEqual('%d' % s, DoGet(_REMOTE, '/statistics')['TotalDiskSize']) |
| 204 self.assertEqual('%d' % s, DoGet(_REMOTE, '/statistics')['TotalUncompressedSize']) | |
| 205 | |
| 206 i = DoGet(_REMOTE, '/instances/%s/simplified-tags' % instance) | |
| 3 | 207 self.assertEqual('20070101', i['StudyDate']) |
| 173 | 208 self.assertEqual('KNIX', i['PatientName']) |
| 209 | |
| 210 if IsOrthancVersionAbove(_REMOTE, 1, 4, 2): | |
| 211 # Overwriting | |
| 212 self.assertEqual('Success', u['Status']) | |
| 213 else: | |
| 214 self.assertEqual('AlreadyStored', u['Status']) | |
| 215 | |
| 216 u = UploadInstance(_REMOTE, 'DummyCT-overwrite.dcm') | |
| 217 self.assertEqual(1, len(DoGet(_REMOTE, '/patients'))) | |
| 218 self.assertEqual(1, len(DoGet(_REMOTE, '/studies'))) | |
| 219 self.assertEqual(1, len(DoGet(_REMOTE, '/series'))) | |
| 220 self.assertEqual(1, len(DoGet(_REMOTE, '/instances'))) | |
| 221 | |
| 222 if IsOrthancVersionAbove(_REMOTE, 1, 4, 2): | |
| 223 # Overwriting | |
| 224 self.assertEqual('Success', u['Status']) | |
| 225 j2 = int(DoGet(_REMOTE, '/instances/%s/attachments/dicom-as-json/size' % instance)) | |
| 226 s2 = sizeOverwrite + j2 | |
| 227 self.assertNotEqual(s, s2) | |
| 228 self.assertNotEqual(j, j2) | |
| 229 self.assertEqual('%d' % s2, DoGet(_REMOTE, '/statistics')['TotalDiskSize']) | |
| 230 self.assertEqual('%d' % s2, DoGet(_REMOTE, '/statistics')['TotalUncompressedSize']) | |
| 231 i = DoGet(_REMOTE, '/instances/%s/simplified-tags' % instance) | |
| 232 self.assertEqual('ANOTHER', i['PatientName']) | |
| 233 else: | |
| 234 self.assertEqual('AlreadyStored', u['Status']) | |
| 235 self.assertEqual('%d' % s, DoGet(_REMOTE, '/statistics')['TotalDiskSize']) | |
| 236 self.assertEqual('%d' % s, DoGet(_REMOTE, '/statistics')['TotalUncompressedSize']) | |
| 3 | 237 |
| 5 | 238 def test_upload_2(self): |
| 3 | 239 i = UploadInstance(_REMOTE, 'DummyCT.dcm')['ID'] |
| 240 instance = DoGet(_REMOTE, '/instances/%s' % i) | |
| 241 self.assertEqual(i, instance['ID']) | |
| 242 self.assertEqual('1.2.840.113619.2.176.2025.1499492.7040.1171286242.109', | |
| 243 instance['MainDicomTags']['SOPInstanceUID']) | |
| 244 | |
| 245 series = DoGet(_REMOTE, '/series/%s' % instance['ParentSeries']) | |
| 246 self.assertEqual('1.2.840.113619.2.176.2025.1499492.7391.1171285944.394', | |
| 247 series['MainDicomTags']['SeriesInstanceUID']) | |
| 248 | |
| 249 study = DoGet(_REMOTE, '/studies/%s' % series['ParentStudy']) | |
| 250 self.assertEqual('1.2.840.113619.2.176.2025.1499492.7391.1171285944.390', | |
| 251 study['MainDicomTags']['StudyInstanceUID']) | |
| 252 | |
| 253 patient = DoGet(_REMOTE, '/patients/%s' % study['ParentPatient']) | |
| 254 self.assertEqual('ozp00SjY2xG', | |
| 255 patient['MainDicomTags']['PatientID']) | |
| 256 | |
| 257 dicom = DoGet(_REMOTE, '/instances/%s/file' % instance['ID']) | |
| 258 self.assertEqual(2472, len(dicom)) | |
| 259 self.assertEqual('3e29b869978b6db4886355a2b1132124', ComputeMD5(dicom)) | |
| 260 self.assertEqual(1, len(DoGet(_REMOTE, '/instances/%s/frames' % i))) | |
| 261 self.assertEqual('TWINOW', DoGet(_REMOTE, '/instances/%s/simplified-tags' % i)['StationName']) | |
| 262 self.assertEqual('TWINOW', DoGet(_REMOTE, '/instances/%s/tags' % i)['0008,1010']['Value']) | |
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263 self.assertEqual('TWINOW', DoGet(_REMOTE, '/instances/%s/tags?simplify' % i)['StationName']) |
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264 self.assertEqual('TWINOW', DoGet(_REMOTE, '/instances/%s/tags?short' % i)['0008,1010']) |
| 3 | 265 |
| 266 | |
| 5 | 267 def test_images(self): |
| 268 i = UploadInstance(_REMOTE, 'Phenix/IM-0001-0001.dcm')['ID'] | |
| 269 self.assertEqual(1, len(DoGet(_REMOTE, '/instances/%s/frames' % i))) | |
| 3 | 270 |
| 5 | 271 im = GetImage(_REMOTE, '/instances/%s/preview' % i) |
| 272 self.assertEqual("L", im.mode) | |
| 273 self.assertEqual(512, im.size[0]) | |
| 274 self.assertEqual(358, im.size[1]) | |
| 275 | |
| 276 im = GetImage(_REMOTE, '/instances/%s/image-uint8' % i) | |
| 277 self.assertEqual("L", im.mode) | |
| 278 self.assertEqual(512, im.size[0]) | |
| 279 self.assertEqual(358, im.size[1]) | |
| 280 | |
| 281 im = GetImage(_REMOTE, '/instances/%s/image-uint16' % i) | |
| 282 self.assertEqual(512, im.size[0]) | |
| 283 self.assertEqual(358, im.size[1]) | |
| 284 | |
| 285 im = GetImage(_REMOTE, '/instances/%s/frames/0/preview' % i) | |
| 286 self.assertEqual("L", im.mode) | |
| 287 self.assertEqual(512, im.size[0]) | |
| 288 self.assertEqual(358, im.size[1]) | |
| 289 | |
| 290 im = GetImage(_REMOTE, '/instances/%s/frames/0/image-uint8' % i) | |
| 291 self.assertEqual("L", im.mode) | |
| 292 self.assertEqual(512, im.size[0]) | |
| 293 self.assertEqual(358, im.size[1]) | |
| 294 | |
| 295 im = GetImage(_REMOTE, '/instances/%s/frames/0/image-uint16' % i) | |
| 296 self.assertEqual(512, im.size[0]) | |
| 297 self.assertEqual(358, im.size[1]) | |
| 64 | 298 |
| 299 # This is Little Endian Explicit | |
| 300 self.assertEqual('1.2.840.10008.1.2.1', DoGet(_REMOTE, '/instances/%s/header?simplify' % i)['TransferSyntaxUID']) | |
| 301 | |
| 6 | 302 |
| 303 def test_hierarchy(self): | |
| 304 UploadFolder(_REMOTE, 'Brainix/Epi') | |
| 305 UploadFolder(_REMOTE, 'Brainix/Flair') | |
| 306 UploadFolder(_REMOTE, 'Knee/T1') | |
| 307 UploadFolder(_REMOTE, 'Knee/T2') | |
| 308 | |
| 309 p = DoGet(_REMOTE, '/patients') | |
| 310 s = DoGet(_REMOTE, '/studies') | |
| 311 t = DoGet(_REMOTE, '/series') | |
| 312 self.assertEqual(2, len(p)) | |
| 313 self.assertEqual(2, len(s)) | |
| 314 self.assertEqual(4, len(t)) | |
| 315 self.assertEqual(94, len(DoGet(_REMOTE, '/instances'))) | |
| 316 | |
| 317 brainixPatient = '16738bc3-e47ed42a-43ce044c-a3414a45-cb069bd0' | |
| 318 brainixStudy = '27f7126f-4f66fb14-03f4081b-f9341db2-53925988' | |
| 319 brainixEpi = '2ac1316d-3e432022-62eabff2-c59f5475-9b1ac3f8' | |
| 320 brainixFlair = '1e2c125c-411b8e86-3f4fe68e-a7584dd3-c6da78f0' | |
| 321 | |
| 322 kneePatient = 'ca29faea-b6a0e17f-067743a1-8b778011-a48b2a17' | |
| 323 kneeStudy = '0a9b3153-2512774b-2d9580de-1fc3dcf6-3bd83918' | |
| 324 kneeT1 = '6de73705-c4e65c1b-9d9ea1b5-cabcd8e7-f15e4285' | |
| 325 kneeT2 = 'bbf7a453-0d34251a-03663b55-46bb31b9-ffd74c59' | |
| 326 | |
| 327 self.assertTrue(brainixPatient in p) | |
| 328 self.assertTrue(kneePatient in p) | |
| 329 self.assertTrue(brainixStudy in s) | |
| 330 self.assertTrue(kneeStudy in s) | |
| 331 self.assertTrue(brainixEpi in t) | |
| 332 self.assertTrue(brainixFlair in t) | |
| 333 self.assertTrue(kneeT1 in t) | |
| 334 self.assertTrue(kneeT2 in t) | |
| 335 | |
| 336 self.assertEqual(44, len(DoGet(_REMOTE, '/patients/%s/instances' % brainixPatient))) | |
| 337 self.assertEqual(2, len(DoGet(_REMOTE, '/patients/%s/series' % brainixPatient))) | |
| 338 self.assertEqual(1, len(DoGet(_REMOTE, '/patients/%s/studies' % brainixPatient))) | |
| 339 | |
| 340 self.assertEqual(50, len(DoGet(_REMOTE, '/patients/%s/instances' % kneePatient))) | |
| 341 self.assertEqual(2, len(DoGet(_REMOTE, '/patients/%s/series' % kneePatient))) | |
| 342 self.assertEqual(1, len(DoGet(_REMOTE, '/patients/%s/studies' % kneePatient))) | |
| 343 | |
| 344 self.assertEqual(2, len(DoGet(_REMOTE, '/studies/%s/series' % brainixStudy))) | |
| 345 self.assertEqual(44, len(DoGet(_REMOTE, '/studies/%s/instances' % brainixStudy))) | |
| 346 | |
| 347 self.assertEqual(2, len(DoGet(_REMOTE, '/studies/%s/series' % kneeStudy))) | |
| 348 self.assertEqual(50, len(DoGet(_REMOTE, '/studies/%s/instances' % kneeStudy))) | |
| 349 | |
| 350 self.assertEqual(22, len(DoGet(_REMOTE, '/series/%s/instances' % brainixEpi))) | |
| 351 self.assertEqual(22, len(DoGet(_REMOTE, '/series/%s/instances' % brainixFlair))) | |
| 352 self.assertEqual(24, len(DoGet(_REMOTE, '/series/%s/instances' % kneeT1))) | |
| 353 self.assertEqual(26, len(DoGet(_REMOTE, '/series/%s/instances' % kneeT2))) | |
| 354 | |
| 355 for patient in p: | |
| 356 for study in DoGet(_REMOTE, '/patients/%s/studies' % patient): | |
| 357 self.assertEqual(patient, study['ParentPatient']) | |
| 358 for series in DoGet(_REMOTE, '/studies/%s/series' % study['ID']): | |
| 359 self.assertEqual(study['ID'], series['ParentStudy']) | |
| 211 | 360 self.assertEqual('Unknown', series['Status']) |
| 6 | 361 for instance in DoGet(_REMOTE, '/series/%s/instances' % series['ID']): |
| 362 self.assertEqual(series['ID'], instance['ParentSeries']) | |
| 363 | |
| 364 self.assertEqual(json.dumps(DoGet(_REMOTE, '/instances/%s/attachments/dicom-as-json/data' % instance['ID'])), | |
| 365 json.dumps(DoGet(_REMOTE, '/instances/%s/tags' % instance['ID']))) | |
| 366 | |
| 367 | |
| 368 r = DoDelete(_REMOTE, "/studies/%s" % brainixStudy)['RemainingAncestor'] | |
| 369 self.assertEqual(1, len(DoGet(_REMOTE, '/patients'))) | |
| 370 self.assertEqual(1, len(DoGet(_REMOTE, '/studies'))) | |
| 371 self.assertEqual(2, len(DoGet(_REMOTE, '/series'))) | |
| 372 self.assertEqual(50, len(DoGet(_REMOTE, '/instances'))) | |
| 373 self.assertEqual(None, r) | |
| 374 | |
| 375 r = DoDelete(_REMOTE, "/series/%s" % kneeT2)['RemainingAncestor'] | |
| 376 self.assertEqual(1, len(DoGet(_REMOTE, '/patients'))) | |
| 377 self.assertEqual(1, len(DoGet(_REMOTE, '/studies'))) | |
| 378 self.assertEqual(1, len(DoGet(_REMOTE, '/series'))) | |
| 379 self.assertEqual(24, len(DoGet(_REMOTE, '/instances'))) | |
| 380 self.assertEqual('Study', r['Type']) | |
| 381 self.assertEqual(kneeStudy, r['ID']) | |
| 382 | |
| 383 r = DoDelete(_REMOTE, "/instances/%s" % DoGet(_REMOTE, '/instances')[0])['RemainingAncestor'] | |
| 384 self.assertEqual(1, len(DoGet(_REMOTE, '/patients'))) | |
| 385 self.assertEqual(1, len(DoGet(_REMOTE, '/studies'))) | |
| 386 self.assertEqual(1, len(DoGet(_REMOTE, '/series'))) | |
| 387 self.assertEqual(23, len(DoGet(_REMOTE, '/instances'))) | |
| 388 self.assertEqual('Series', r['Type']) | |
| 389 self.assertEqual(kneeT1, r['ID']) | |
| 390 | |
| 391 r = DoDelete(_REMOTE, "/patients/%s" % kneePatient)['RemainingAncestor'] | |
| 392 self.assertEqual(0, len(DoGet(_REMOTE, '/patients'))) | |
| 393 self.assertEqual(0, len(DoGet(_REMOTE, '/studies'))) | |
| 394 self.assertEqual(0, len(DoGet(_REMOTE, '/series'))) | |
| 395 self.assertEqual(0, len(DoGet(_REMOTE, '/instances'))) | |
| 396 self.assertEqual(None, r) | |
| 397 | |
| 398 DropOrthanc(_REMOTE) | |
| 399 self.assertEqual('0', DoGet(_REMOTE, '/statistics')['TotalDiskSize']) | |
| 400 self.assertEqual('0', DoGet(_REMOTE, '/statistics')['TotalUncompressedSize']) | |
| 7 | 401 |
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402 def test_delete_cascade(self): |
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403 # make sure deleting the last instance of a study deletes the series, study and patient |
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404 |
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405 self.assertEqual(0, len(DoGet(_REMOTE, '/instances'))) # make sure orthanc is empty when starting the test |
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406 a = UploadInstance(_REMOTE, 'DummyCT.dcm')['ID'] |
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407 self.assertEqual(1, len(DoGet(_REMOTE, '/instances'))) |
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408 self.assertEqual(1, len(DoGet(_REMOTE, '/series'))) |
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409 self.assertEqual(1, len(DoGet(_REMOTE, '/studies'))) |
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410 self.assertEqual(1, len(DoGet(_REMOTE, '/patients'))) |
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411 |
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412 DoDelete(_REMOTE, '/instances/%s' % a) |
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413 |
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414 self.assertEqual(0, len(DoGet(_REMOTE, '/instances'))) |
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415 self.assertEqual(0, len(DoGet(_REMOTE, '/series'))) |
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416 self.assertEqual(0, len(DoGet(_REMOTE, '/studies'))) |
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417 self.assertEqual(0, len(DoGet(_REMOTE, '/patients'))) |
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418 |
| 7 | 419 |
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420 def test_multiframe(self): |
| 7 | 421 i = UploadInstance(_REMOTE, 'Multiframe.dcm')['ID'] |
| 422 self.assertEqual(76, len(DoGet(_REMOTE, '/instances/%s/frames' % i))) | |
| 423 | |
| 424 im = GetImage(_REMOTE, '/instances/%s/frames/0/preview' % i) | |
| 425 self.assertEqual("L", im.mode) | |
| 426 self.assertEqual(512, im.size[0]) | |
| 427 self.assertEqual(512, im.size[1]) | |
| 428 | |
| 429 DoGet(_REMOTE, '/instances/%s/frames/0/image-uint8' % i) | |
| 430 DoGet(_REMOTE, '/instances/%s/frames/0/image-uint16' % i) | |
| 431 DoGet(_REMOTE, '/instances/%s/frames/75/preview' % i) | |
| 432 self.assertRaises(Exception, lambda: DoGet(_REMOTE, '/instances/%s/frames/aaa/preview' % i)) | |
| 433 self.assertRaises(Exception, lambda: DoGet(_REMOTE, '/instances/%s/frames/76/preview' % i)) | |
| 434 | |
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435 |
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436 def test_changes(self): |
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437 # Check emptiness |
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438 c = DoGet(_REMOTE, '/changes') |
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439 self.assertEqual(0, len(c['Changes'])) |
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440 #self.assertEqual(0, c['Last']) # Not true anymore for Orthanc >= 1.5.2 |
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441 self.assertTrue(c['Done']) |
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442 c = DoGet(_REMOTE, '/changes?last') |
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443 self.assertEqual(0, len(c['Changes'])) |
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444 #self.assertEqual(0, c['Last']) # Not true anymore for Orthanc >= 1.5.2 |
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445 self.assertTrue(c['Done']) |
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446 |
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447 # Add 1 instance |
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448 i = UploadInstance(_REMOTE, 'Brainix/Flair/IM-0001-0001.dcm')['ID'] |
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449 c = DoGet(_REMOTE, '/changes') |
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450 begin = c['Last'] |
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451 self.assertEqual(4, len(c['Changes'])) |
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452 self.assertTrue(c['Done']) |
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453 self.assertEqual(c['Changes'][-1]['Seq'], c['Last']) |
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454 |
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455 c = DoGet(_REMOTE, '/changes?last') |
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456 self.assertEqual(1, len(c['Changes'])) |
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457 self.assertEqual(begin, c['Last']) |
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458 self.assertTrue(c['Done']) |
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459 c = DoGet(_REMOTE, '/changes?limit=1&since=' + str(begin - 1)) |
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460 self.assertEqual(1, len(c['Changes'])) |
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461 self.assertEqual(begin, c['Last']) |
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462 self.assertTrue(c['Done']) |
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463 c = DoGet(_REMOTE, '/changes?limit=1&since=' + str(begin - 2)) |
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464 self.assertEqual(1, len(c['Changes'])) |
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465 self.assertEqual(begin - 1, c['Last']) |
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466 self.assertFalse(c['Done']) |
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467 c = DoGet(_REMOTE, '/changes?limit=1&since=' + str(begin - 3)) |
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468 self.assertEqual(1, len(c['Changes'])) |
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469 self.assertEqual(begin - 2, c['Last']) |
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470 self.assertFalse(c['Done']) |
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|
471 |
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472 UploadFolder(_REMOTE, 'Knee/T1') |
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473 UploadFolder(_REMOTE, 'Knee/T2') |
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474 since = begin |
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475 countPatients = 0 |
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476 countStudies = 0 |
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477 countSeries = 0 |
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478 countInstances = 0 |
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479 completed = 0 |
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480 while True: |
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481 c = DoGet(_REMOTE, '/changes', { 'since' : since, 'limit' : 3 }) |
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482 since = c['Last'] |
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483 for i in c['Changes']: |
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484 if i['ResourceType'] == 'Instance': |
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485 countInstances += 1 |
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486 if i['ResourceType'] == 'Patient': |
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487 countPatients += 1 |
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488 if i['ResourceType'] == 'Study': |
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489 countStudies += 1 |
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490 if i['ResourceType'] == 'Series': |
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491 countSeries += 1 |
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492 if i['ChangeType'] == 'NewInstance': |
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493 countInstances += 1 |
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494 if i['ChangeType'] == 'NewPatient': |
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495 countPatients += 1 |
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496 if i['ChangeType'] == 'NewStudy': |
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497 countStudies += 1 |
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498 if i['ChangeType'] == 'NewSeries': |
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499 countSeries += 1 |
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500 if i['ChangeType'] == 'CompletedSeries': |
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501 completed += 1 |
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502 self.assertTrue('ID' in i) |
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503 self.assertTrue('Path' in i) |
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504 self.assertTrue('Seq' in i) |
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505 if c['Done']: |
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|
506 break |
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|
507 |
|
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508 self.assertEqual(2 * 50, countInstances) |
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509 self.assertEqual(2 * 1, countPatients) |
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510 self.assertEqual(2 * 1, countStudies) |
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511 self.assertEqual(2 * 2, countSeries) |
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512 self.assertEqual(0, completed) |
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|
513 |
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|
514 |
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515 def test_archive(self): |
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516 UploadInstance(_REMOTE, 'Knee/T1/IM-0001-0001.dcm') |
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517 UploadInstance(_REMOTE, 'Knee/T2/IM-0001-0001.dcm') |
| 192 | 518 knee = 'ca29faea-b6a0e17f-067743a1-8b778011-a48b2a17' |
| 519 | |
| 520 z = GetArchive(_REMOTE, '/patients/%s/archive' % knee) | |
|
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521 self.assertEqual(2, len(z.namelist())) |
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|
522 |
|
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523 z = GetArchive(_REMOTE, '/studies/%s/archive' % DoGet(_REMOTE, '/studies')[0]) |
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524 self.assertEqual(2, len(z.namelist())) |
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|
525 |
|
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526 z = GetArchive(_REMOTE, '/series/%s/archive' % DoGet(_REMOTE, '/series')[0]) |
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527 self.assertEqual(1, len(z.namelist())) |
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|
528 |
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|
529 UploadInstance(_REMOTE, 'Brainix/Flair/IM-0001-0001.dcm') |
| 192 | 530 brainix = '16738bc3-e47ed42a-43ce044c-a3414a45-cb069bd0' |
| 531 | |
| 532 z = GetArchive(_REMOTE, '/patients/%s/archive' % knee) | |
|
8
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533 self.assertEqual(2, len(z.namelist())) |
| 192 | 534 |
| 535 z = PostArchive(_REMOTE, '/tools/create-archive', { | |
| 536 'Resources' : [ brainix, knee ] | |
| 537 }) | |
| 538 self.assertEqual(3, len(z.namelist())) | |
| 539 | |
|
8
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changeset
|
540 |
|
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changeset
|
541 def test_media_archive(self): |
|
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542 UploadInstance(_REMOTE, 'Knee/T1/IM-0001-0001.dcm') |
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|
543 UploadInstance(_REMOTE, 'Knee/T2/IM-0001-0001.dcm') |
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|
544 |
|
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|
545 z = GetArchive(_REMOTE, '/patients/%s/media' % DoGet(_REMOTE, '/patients')[0]) |
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546 self.assertEqual(3, len(z.namelist())) |
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547 self.assertTrue('IMAGES/IM0' in z.namelist()) |
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548 self.assertTrue('IMAGES/IM1' in z.namelist()) |
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549 self.assertTrue('DICOMDIR' in z.namelist()) |
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|
550 |
|
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changeset
|
551 try: |
|
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|
552 os.remove('/tmp/DICOMDIR') |
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changeset
|
553 except: |
|
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Sebastien Jodogne <s.jodogne@gmail.com>
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|
554 # The file does not exist |
|
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changeset
|
555 pass |
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changeset
|
556 |
|
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changeset
|
557 z.extract('DICOMDIR', '/tmp') |
| 45 | 558 a = subprocess.check_output([ FindExecutable('dciodvfy'), '/tmp/DICOMDIR' ], |
|
8
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559 stderr = subprocess.STDOUT).split('\n') |
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560 self.assertEqual(3, len(a)) |
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561 self.assertTrue(a[0].startswith('Warning')) |
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562 self.assertEqual('BasicDirectory', a[1]) |
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563 self.assertEqual('', a[2]) |
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|
564 |
| 45 | 565 a = subprocess.check_output([ FindExecutable('dcentvfy'), '/tmp/DICOMDIR' ], |
|
8
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|
566 stderr = subprocess.STDOUT).split('\n') |
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567 self.assertEqual(1, len(a)) |
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|
568 self.assertEqual('', a[0]) |
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|
569 |
| 45 | 570 a = subprocess.check_output([ FindExecutable('dcm2xml'), '/tmp/DICOMDIR' ]) |
|
8
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|
571 self.assertTrue(re.search('1.3.46.670589.11.17521.5.0.3124.2008081908590448738', a) != None) |
|
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changeset
|
572 self.assertTrue(re.search('1.3.46.670589.11.17521.5.0.3124.2008081909113806560', a) != None) |
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changeset
|
573 |
|
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parents:
7
diff
changeset
|
574 os.remove('/tmp/DICOMDIR') |
| 10 | 575 |
| 576 | |
| 577 def test_protection(self): | |
| 578 UploadInstance(_REMOTE, 'Knee/T1/IM-0001-0001.dcm') | |
| 579 UploadInstance(_REMOTE, 'Brainix/Flair/IM-0001-0001.dcm') | |
| 580 self.assertEqual(2, len(DoGet(_REMOTE, '/patients'))) | |
| 581 a = DoGet(_REMOTE, '/patients')[0] | |
| 582 b = DoGet(_REMOTE, '/patients')[1] | |
| 583 self.assertEqual(0, DoGet(_REMOTE, '/patients/%s/protected' % a)) | |
| 584 DoPut(_REMOTE, '/patients/%s/protected' % a, '0', 'text/plain') | |
| 585 self.assertEqual(0, DoGet(_REMOTE, '/patients/%s/protected' % a)) | |
| 586 DoPut(_REMOTE, '/patients/%s/protected' % a, '1', 'text/plain') | |
| 587 self.assertEqual(1, DoGet(_REMOTE, '/patients/%s/protected' % a)) | |
| 588 DoPut(_REMOTE, '/patients/%s/protected' % a, '0', 'text/plain') | |
| 589 self.assertEqual(0, DoGet(_REMOTE, '/patients/%s/protected' % a)) | |
| 590 | |
| 591 | |
| 12 | 592 def test_raw_tags(self): |
| 10 | 593 i = UploadInstance(_REMOTE, 'PrivateTags.dcm')['ID'] |
| 594 | |
| 595 dicom = DoGet(_REMOTE, '/instances/%s/file' % i) | |
| 596 self.assertEqual('1a7c56cb02d6e742cc9c856a8ac182e3', ComputeMD5(dicom)) | |
| 597 | |
| 598 s = '/instances/%s/content/' % i | |
| 599 | |
| 600 self.assertEqual('LOGIQBOOK', DoGet(_REMOTE, s + '0008-1010').strip()) | |
| 601 self.assertRaises(Exception, lambda: DoGet(_REMOTE, s + '0008-1011')) | |
| 602 | |
| 603 self.assertEqual('Abdomen', DoGet(_REMOTE, s + '7fe1-1001/0/7fe1-1008/0/7fe1-1057').strip()) | |
| 604 self.assertEqual('cla_3c', DoGet(_REMOTE, s + '7fe1-1001/0/7fe1-1008/8/7fe1-1057').strip()) | |
| 605 | |
| 606 UploadInstance(_REMOTE, 'Brainix/Epi/IM-0001-0001.dcm') | |
| 607 UploadInstance(_REMOTE, 'Brainix/Flair/IM-0001-0001.dcm') | |
| 608 UploadInstance(_REMOTE, 'Knee/T1/IM-0001-0001.dcm') | |
| 609 UploadInstance(_REMOTE, 'Knee/T2/IM-0001-0001.dcm') | |
| 610 | |
| 611 for i in DoGet(_REMOTE, '/instances'): | |
| 612 aid = DoGet(_REMOTE, '/instances/%s' % i)['MainDicomTags']['SOPInstanceUID'] | |
| 613 self.assertEqual(aid, DoGet(_REMOTE, '/instances/%s/content/0008-0018' % i).replace(chr(0), '')) | |
| 614 | |
| 615 | |
| 616 def test_raw_tags_mdn(self): | |
| 617 # Bug reported by Cyril Paulus | |
| 618 i = UploadInstance(_REMOTE, 'PrivateMDNTags.dcm')['ID'] | |
| 619 self.assertAlmostEqual(0.000027, DoGet(_REMOTE, '/instances/%s/content/7053-1000' % i)) | |
| 620 | |
| 621 | |
| 622 def test_modify_instance(self): | |
| 623 i = UploadInstance(_REMOTE, 'PrivateTags.dcm')['ID'] | |
| 624 modified = DoPost(_REMOTE, '/instances/%s/modify' % i, | |
| 625 json.dumps({ | |
| 626 "Replace" : { | |
| 627 "PatientName" : "hello", | |
| 628 #"PatientID" : "world" | |
| 629 }, | |
| 630 "Remove" : [ "StationName" ], | |
|
118
a954c535fef6
test_bitbucket_issue_55
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
117
diff
changeset
|
631 "RemovePrivateTags" : True |
| 10 | 632 }), |
| 633 'application/json') | |
| 634 j = DoPost(_REMOTE, '/instances', modified, 'application/dicom')['ID'] | |
| 635 | |
| 636 self.assertNotEqual('hello', DoGet(_REMOTE, '/instances/%s/content/0010-0010' % i).strip()) | |
| 637 #self.assertNotEqual('world', DoGet(_REMOTE, '/instances/%s/content/0010-0020' % i).strip()) | |
| 83 | 638 self.assertEqual('LOGIQBOOK', DoGet(_REMOTE, '/instances/%s/content/0008-1010' % i).strip()) |
| 10 | 639 DoGet(_REMOTE, '/instances/%s/content/6003-1010' % i) # Some private tag |
| 640 | |
| 641 self.assertEqual('hello', DoGet(_REMOTE, '/instances/%s/content/0010-0010' % j).strip()) | |
| 642 #self.assertEqual('world', DoGet(_REMOTE, '/instances/%s/content/0010-0020' % j).strip()) | |
| 643 self.assertRaises(Exception, lambda: DoGet(_REMOTE, '/instances/%s/content/0008-1010' % j)) | |
| 644 self.assertRaises(Exception, lambda: DoGet(_REMOTE, '/instances/%s/content/6003-1010' % j)) | |
| 645 | |
| 646 | |
| 647 def test_modify_series(self): | |
| 648 # Upload 4 images from the same series | |
| 649 for i in range(4): | |
| 650 UploadInstance(_REMOTE, 'Brainix/Epi/IM-0001-000%d.dcm' % (i + 1)) | |
| 651 | |
| 652 origSeries = DoGet(_REMOTE, '/series')[0] | |
| 653 newSeries = DoPost(_REMOTE, '/series/%s/modify' % origSeries, | |
| 654 '{"Replace":{"PatientName":"Jodogne"}}', | |
| 655 'application/json')['ID'] | |
| 656 | |
| 657 self.assertEqual(origSeries, DoGet(_REMOTE, '/series/%s' % newSeries)['ModifiedFrom']) | |
| 658 instances = DoGet(_REMOTE, '/series/%s' % newSeries)['Instances'] | |
| 659 self.assertEqual(4, len(instances)) | |
| 660 for i in instances: | |
| 661 j = DoGet(_REMOTE, '/instances/%s' % i)['ModifiedFrom'] | |
| 662 self.assertEqual(newSeries, DoGet(_REMOTE, '/instances/%s' % i)['ParentSeries']) | |
| 663 self.assertEqual(origSeries, DoGet(_REMOTE, '/instances/%s' % j)['ParentSeries']) | |
| 664 | |
| 665 self.assertEqual('Jodogne', DoGet(_REMOTE, '/instances/%s/content/0010-0010' % i).strip()) | |
| 666 self.assertNotEqual('Jodogne', DoGet(_REMOTE, '/instances/%s/content/0010-0010' % j).strip()) | |
| 667 | |
| 668 | |
| 669 def test_modify_study(self): | |
| 670 # Upload 4 images from the 2 series of the same study | |
| 671 for i in range(4): | |
| 672 UploadInstance(_REMOTE, 'Brainix/Flair/IM-0001-000%d.dcm' % (i + 1)) | |
| 673 UploadInstance(_REMOTE, 'Brainix/Epi/IM-0001-000%d.dcm' % (i + 1)) | |
| 674 | |
| 675 origStudy = DoGet(_REMOTE, '/studies')[0] | |
| 676 newStudy = DoPost(_REMOTE, '/studies/%s/modify' % origStudy, | |
| 677 '{"Replace":{"PatientName":"Jodogne"}}', | |
| 678 'application/json')['ID'] | |
| 679 | |
| 680 self.assertEqual(origStudy, DoGet(_REMOTE, '/studies/%s' % newStudy)['ModifiedFrom']) | |
| 681 series = DoGet(_REMOTE, '/studies/%s' % newStudy)['Series'] | |
| 682 self.assertEqual(2, len(series)) | |
| 683 for s in series: | |
| 684 ss = DoGet(_REMOTE, '/series/%s' % s)['ModifiedFrom'] | |
| 685 self.assertEqual(newStudy, DoGet(_REMOTE, '/series/%s' % s)['ParentStudy']) | |
| 686 self.assertEqual(origStudy, DoGet(_REMOTE, '/series/%s' % ss)['ParentStudy']) | |
| 687 | |
| 688 instances = DoGet(_REMOTE, '/series/%s' % s)['Instances'] | |
| 689 for i in instances: | |
| 690 j = DoGet(_REMOTE, '/instances/%s' % i)['ModifiedFrom'] | |
| 691 self.assertEqual(s, DoGet(_REMOTE, '/instances/%s' % i)['ParentSeries']) | |
| 692 self.assertEqual(ss, DoGet(_REMOTE, '/instances/%s' % j)['ParentSeries']) | |
| 693 | |
| 694 self.assertEqual('Jodogne', DoGet(_REMOTE, '/instances/%s/content/0010-0010' % i).strip()) | |
| 695 self.assertNotEqual('Jodogne', DoGet(_REMOTE, '/instances/%s/content/0010-0010' % j).strip()) | |
| 696 | |
| 697 | |
| 698 def test_anonymize_series(self): | |
| 699 # Upload 4 images from the same series | |
| 700 for i in range(4): | |
| 701 UploadInstance(_REMOTE, 'Brainix/Epi/IM-0001-000%d.dcm' % (i + 1)) | |
| 702 | |
| 703 origSeries = DoGet(_REMOTE, '/series')[0] | |
| 704 newSeries = DoPost(_REMOTE, '/series/%s/anonymize' % origSeries, | |
| 705 '{}', | |
| 706 'application/json')['ID'] | |
| 707 | |
| 708 self.assertEqual(origSeries, DoGet(_REMOTE, '/series/%s' % newSeries)['AnonymizedFrom']) | |
| 709 instances = DoGet(_REMOTE, '/series/%s' % newSeries)['Instances'] | |
| 710 self.assertEqual(4, len(instances)) | |
| 711 for i in instances: | |
| 712 j = DoGet(_REMOTE, '/instances/%s' % i)['AnonymizedFrom'] | |
| 713 self.assertEqual(newSeries, DoGet(_REMOTE, '/instances/%s' % i)['ParentSeries']) | |
| 714 self.assertEqual(origSeries, DoGet(_REMOTE, '/instances/%s' % j)['ParentSeries']) | |
| 715 | |
| 716 DoGet(_REMOTE, '/instances/%s/content/0008-1010' % j) | |
| 717 self.assertRaises(Exception, lambda: DoGet(_REMOTE, '/instances/%s/content/0008-1010' % i)) | |
| 718 | |
| 719 | |
| 720 def test_anonymize_study(self): | |
| 721 # Upload 4 images from the 2 series of the same study | |
| 722 for i in range(4): | |
| 723 UploadInstance(_REMOTE, 'Brainix/Flair/IM-0001-000%d.dcm' % (i + 1)) | |
| 724 UploadInstance(_REMOTE, 'Brainix/Epi/IM-0001-000%d.dcm' % (i + 1)) | |
| 725 | |
| 726 origStudy = DoGet(_REMOTE, '/studies')[0] | |
| 727 newStudy = DoPost(_REMOTE,'/studies/%s/anonymize' % origStudy, | |
| 728 '{"Replace":{"PatientName":"Jodogne"}}', | |
| 729 'application/json')['ID'] | |
| 730 | |
| 731 self.assertEqual(origStudy, DoGet(_REMOTE, '/studies/%s' % newStudy)['AnonymizedFrom']) | |
| 732 series = DoGet(_REMOTE, '/studies/%s' % newStudy)['Series'] | |
| 733 self.assertEqual(2, len(series)) | |
| 734 for s in series: | |
| 735 ss = DoGet(_REMOTE, '/series/%s' % s)['AnonymizedFrom'] | |
| 736 self.assertEqual(newStudy, DoGet(_REMOTE, '/series/%s' % s)['ParentStudy']) | |
| 737 self.assertEqual(origStudy, DoGet(_REMOTE, '/series/%s' % ss)['ParentStudy']) | |
| 738 | |
| 739 instances = DoGet(_REMOTE, '/series/%s' % s)['Instances'] | |
| 740 for i in instances: | |
| 741 j = DoGet(_REMOTE, '/instances/%s' % i)['AnonymizedFrom'] | |
| 742 self.assertEqual(s, DoGet(_REMOTE, '/instances/%s' % i)['ParentSeries']) | |
| 743 self.assertEqual(ss, DoGet(_REMOTE, '/instances/%s' % j)['ParentSeries']) | |
| 744 | |
| 745 self.assertEqual('Jodogne', DoGet(_REMOTE, '/instances/%s/content/0010-0010' % i).strip()) | |
| 746 self.assertNotEqual('Jodogne', DoGet(_REMOTE, '/instances/%s/content/0010-0010' % j).strip()) | |
| 11 | 747 |
| 748 | |
| 749 | |
| 750 def test_storescu(self): | |
| 751 # Check emptiness | |
| 752 e = DoGet(_REMOTE, '/exports') | |
| 753 self.assertEqual(0, len(e['Exports'])) | |
| 754 self.assertEqual(0, e['Last']) | |
| 755 self.assertTrue(e['Done']) | |
| 756 e = DoGet(_REMOTE, '/exports?last') | |
| 757 self.assertEqual(0, len(e['Exports'])) | |
| 758 self.assertEqual(0, e['Last']) | |
| 759 self.assertTrue(e['Done']) | |
| 760 | |
| 761 # Add 1 instance | |
| 762 i = UploadInstance(_REMOTE, 'DummyCT.dcm')['ID'] | |
| 763 self.assertEqual(0, len(DoGet(_LOCAL, '/patients'))) | |
| 764 | |
| 765 # Export the instance | |
| 766 j = DoPost(_REMOTE, '/modalities/orthanctest/store', str(i), 'text/plain') # instance | |
| 767 self.assertEqual(1, len(DoGet(_LOCAL, '/patients'))) | |
| 768 self.assertEqual(1, len(DoGet(_LOCAL, '/studies'))) | |
| 769 self.assertEqual(1, len(DoGet(_LOCAL, '/series'))) | |
| 770 self.assertEqual(1, len(DoGet(_LOCAL, '/instances'))) | |
| 771 | |
| 772 e = DoGet(_REMOTE, '/exports') | |
| 773 self.assertEqual(1, len(e['Exports'])) | |
| 774 self.assertTrue(e['Done']) | |
| 775 self.assertEqual(e['Exports'][-1]['Seq'], e['Last']) | |
| 776 e = DoGet(_REMOTE, '/exports?limit=1') | |
| 777 self.assertEqual(1, len(e['Exports'])) | |
| 778 self.assertTrue(e['Done']) | |
| 779 self.assertEqual(e['Exports'][-1]['Seq'], e['Last']) | |
| 780 e = DoGet(_REMOTE, '/exports?last') | |
| 781 self.assertEqual(1, len(e['Exports'])) | |
| 782 self.assertTrue(e['Done']) | |
| 783 self.assertEqual(e['Exports'][-1]['Seq'], e['Last']) | |
| 784 seqInstance = e['Last'] | |
| 785 | |
| 786 # Export the series | |
| 787 j = DoPost(_REMOTE, '/modalities/orthanctest/store', 'f2635388-f01d497a-15f7c06b-ad7dba06-c4c599fe', 'text/plain') | |
| 788 | |
| 789 e = DoGet(_REMOTE, '/exports') | |
| 790 self.assertEqual(2, len(e['Exports'])) | |
| 791 self.assertTrue(e['Done']) | |
| 792 self.assertEqual(e['Exports'][-1]['Seq'], e['Last']) | |
| 793 seqSeries = e['Last'] | |
| 794 self.assertNotEqual(seqInstance, seqSeries) | |
| 795 e = DoGet(_REMOTE, '/exports?limit=1&since=0') | |
| 796 self.assertEqual(1, len(e['Exports'])) | |
| 797 self.assertFalse(e['Done']) | |
| 798 self.assertEqual(e['Exports'][-1]['Seq'], seqInstance) | |
| 799 e = DoGet(_REMOTE, '/exports?limit=1&since=' + str(seqInstance)) | |
| 800 self.assertEqual(1, len(e['Exports'])) | |
| 801 self.assertTrue(e['Done']) | |
| 802 self.assertEqual(e['Exports'][-1]['Seq'], seqSeries) | |
| 803 e = DoGet(_REMOTE, '/exports?last') | |
| 804 self.assertEqual(1, len(e['Exports'])) | |
| 805 self.assertTrue(e['Done']) | |
| 806 self.assertEqual(e['Exports'][-1]['Seq'], seqSeries) | |
| 807 | |
| 808 # Export the study | |
| 809 j = DoPost(_REMOTE, '/modalities/orthanctest/store', 'b9c08539-26f93bde-c81ab0d7-bffaf2cb-a4d0bdd0', 'text/plain') | |
| 810 seqStudy = DoGet(_REMOTE, '/exports')['Last'] | |
| 811 | |
| 812 # Export the patient | |
| 813 j = DoPost(_REMOTE, '/modalities/orthanctest/store', '6816cb19-844d5aee-85245eba-28e841e6-2414fae2', 'text/plain') | |
| 814 self.assertEqual(1, len(DoGet(_LOCAL, '/patients'))) | |
| 815 self.assertEqual(1, len(DoGet(_LOCAL, '/studies'))) | |
| 816 self.assertEqual(1, len(DoGet(_LOCAL, '/series'))) | |
| 817 self.assertEqual(1, len(DoGet(_LOCAL, '/instances'))) | |
| 818 | |
| 819 e = DoGet(_REMOTE, '/exports') | |
| 820 self.assertEqual(4, len(e['Exports'])) | |
| 821 self.assertTrue(e['Done']) | |
| 822 self.assertEqual(e['Exports'][-1]['Seq'], e['Last']) | |
| 823 seqPatient = e['Last'] | |
| 824 self.assertNotEqual(seqInstance, seqSeries) | |
| 825 self.assertNotEqual(seqSeries, seqStudy) | |
| 826 self.assertNotEqual(seqStudy, seqPatient) | |
| 827 self.assertTrue(seqInstance < seqSeries) | |
| 828 self.assertTrue(seqSeries < seqStudy) | |
| 829 self.assertTrue(seqStudy < seqPatient) | |
| 830 e = DoGet(_REMOTE, '/exports?limit=1&since=0') | |
| 831 self.assertEqual(1, len(e['Exports'])) | |
| 832 self.assertFalse(e['Done']) | |
| 833 self.assertEqual(e['Exports'][-1]['Seq'], seqInstance) | |
| 834 e = DoGet(_REMOTE, '/exports?limit=1&since=' + str(seqInstance)) | |
| 835 self.assertEqual(1, len(e['Exports'])) | |
| 836 self.assertFalse(e['Done']) | |
| 837 self.assertEqual(e['Exports'][-1]['Seq'], seqSeries) | |
| 838 e = DoGet(_REMOTE, '/exports?limit=1&since=' + str(seqSeries)) | |
| 839 self.assertEqual(1, len(e['Exports'])) | |
| 840 self.assertFalse(e['Done']) | |
| 841 self.assertEqual(e['Exports'][-1]['Seq'], seqStudy) | |
| 842 e = DoGet(_REMOTE, '/exports?limit=1&since=' + str(seqStudy)) | |
| 843 self.assertEqual(1, len(e['Exports'])) | |
| 844 self.assertTrue(e['Done']) | |
| 845 self.assertEqual(e['Exports'][-1]['Seq'], seqPatient) | |
| 846 e = DoGet(_REMOTE, '/exports?last') | |
| 847 self.assertEqual(1, len(e['Exports'])) | |
| 848 self.assertTrue(e['Done']) | |
| 849 self.assertEqual(e['Exports'][-1]['Seq'], seqPatient) | |
| 850 | |
| 851 | |
| 852 # Check the content of the logged information | |
| 853 e = DoGet(_REMOTE, '/exports')['Exports'] | |
| 854 | |
| 855 if 'PatientID' in e[0]: | |
| 856 # Since Orthanc 0.8.6 | |
| 857 patient = 'PatientID' | |
| 858 study = 'StudyInstanceUID' | |
| 859 series = 'SeriesInstanceUID' | |
| 860 instance = 'SOPInstanceUID' | |
| 861 else: | |
| 862 # Up to Orthanc 0.8.5 | |
| 863 patient = 'PatientId' | |
| 864 study = 'StudyInstanceUid' | |
| 865 series = 'SeriesInstanceUid' | |
| 866 instance = 'SopInstanceUid' | |
| 867 | |
| 868 for k in range(4): | |
| 869 self.assertTrue('Date' in e[k]) | |
| 870 self.assertTrue('Seq' in e[k]) | |
| 871 self.assertEqual('orthanctest', e[k]['RemoteModality']) | |
| 872 | |
| 873 self.assertEqual(10, len(e[0])) | |
| 874 self.assertEqual('Instance', e[0]['ResourceType']) | |
| 875 self.assertEqual('66a662ce-7430e543-bad44d47-0dc5a943-ec7a538d', e[0]['ID']) | |
| 876 self.assertEqual('/instances/66a662ce-7430e543-bad44d47-0dc5a943-ec7a538d', e[0]['Path']) | |
| 877 self.assertEqual('1.2.840.113619.2.176.2025.1499492.7040.1171286242.109', e[0][instance]) | |
| 878 self.assertEqual('1.2.840.113619.2.176.2025.1499492.7391.1171285944.394', e[0][series]) | |
| 879 self.assertEqual('1.2.840.113619.2.176.2025.1499492.7391.1171285944.390', e[0][study]) | |
| 880 self.assertEqual('ozp00SjY2xG', e[0][patient]) | |
| 881 | |
| 882 self.assertEqual(9, len(e[1])) | |
| 883 self.assertEqual('Series', e[1]['ResourceType']) | |
| 884 self.assertEqual('f2635388-f01d497a-15f7c06b-ad7dba06-c4c599fe', e[1]['ID']) | |
| 885 self.assertEqual('/series/f2635388-f01d497a-15f7c06b-ad7dba06-c4c599fe', e[1]['Path']) | |
| 886 self.assertEqual('1.2.840.113619.2.176.2025.1499492.7391.1171285944.394', e[1][series]) | |
| 887 self.assertEqual('1.2.840.113619.2.176.2025.1499492.7391.1171285944.390', e[1][study]) | |
| 888 self.assertEqual('ozp00SjY2xG', e[1][patient]) | |
| 889 | |
| 890 self.assertEqual(8, len(e[2])) | |
| 891 self.assertEqual('Study', e[2]['ResourceType']) | |
| 892 self.assertEqual('b9c08539-26f93bde-c81ab0d7-bffaf2cb-a4d0bdd0', e[2]['ID']) | |
| 893 self.assertEqual('/studies/b9c08539-26f93bde-c81ab0d7-bffaf2cb-a4d0bdd0', e[2]['Path']) | |
| 894 self.assertEqual('1.2.840.113619.2.176.2025.1499492.7391.1171285944.390', e[2][study]) | |
| 895 self.assertEqual('ozp00SjY2xG', e[2][patient]) | |
| 896 | |
| 897 self.assertEqual(7, len(e[3])) | |
| 898 self.assertEqual('Patient', e[3]['ResourceType']) | |
| 899 self.assertEqual('6816cb19-844d5aee-85245eba-28e841e6-2414fae2', e[3]['ID']) | |
| 900 self.assertEqual('/patients/6816cb19-844d5aee-85245eba-28e841e6-2414fae2', e[3]['Path']) | |
| 901 self.assertEqual('ozp00SjY2xG', e[3][patient]) | |
| 902 | |
| 903 DropOrthanc(_REMOTE) | |
| 904 self.assertEqual(0, len(DoGet(_REMOTE, '/exports')['Exports'])) | |
| 905 | |
| 906 | |
| 907 def test_store_peer(self): | |
| 908 self.assertEqual(0, len(DoGet(_LOCAL, '/exports')['Exports'])) | |
| 909 self.assertEqual(0, len(DoGet(_REMOTE, '/exports')['Exports'])) | |
| 910 | |
| 911 i = UploadInstance(_REMOTE, 'DummyCT.dcm')['ID'] | |
| 912 self.assertEqual(0, len(DoGet(_LOCAL, '/patients'))) | |
| 913 self.assertEqual(1, len(DoGet(_REMOTE, '/patients'))) | |
| 914 | |
| 915 j = DoPost(_REMOTE, '/peers/peer/store', str(i), 'text/plain') | |
| 916 self.assertEqual(1, len(DoGet(_LOCAL, '/patients'))) | |
| 917 self.assertEqual(1, len(DoGet(_REMOTE, '/patients'))) | |
| 918 | |
| 919 self.assertEqual(1, len(DoGet(_REMOTE, '/exports')['Exports'])) | |
| 920 | |
| 921 DropOrthanc(_REMOTE) | |
| 922 self.assertEqual(0, len(DoGet(_REMOTE, '/exports')['Exports'])) | |
| 923 | |
| 924 | |
| 925 def test_bulk_storescu(self): | |
| 926 self.assertEqual(0, len(DoGet(_LOCAL, '/patients'))) | |
| 927 | |
| 928 a = UploadInstance(_REMOTE, 'Knee/T1/IM-0001-0001.dcm') | |
| 929 b = UploadInstance(_REMOTE, 'Knee/T2/IM-0001-0001.dcm') | |
| 930 | |
| 931 j = DoPost(_REMOTE, '/modalities/orthanctest/store', [ a['ID'], b['ID'] ], 'application/json') | |
| 932 self.assertEqual(2, len(DoGet(_LOCAL, '/instances'))) | |
| 933 | |
| 934 DropOrthanc(_LOCAL) | |
| 935 | |
| 936 # Send using patient's UUID | |
| 937 self.assertEqual(0, len(DoGet(_LOCAL, '/instances'))) | |
| 938 j = DoPost(_REMOTE, '/modalities/orthanctest/store', | |
| 939 [ 'ca29faea-b6a0e17f-067743a1-8b778011-a48b2a17' ], 'application/json') | |
| 940 self.assertEqual(2, len(DoGet(_LOCAL, '/instances'))) | |
| 941 | |
| 942 | |
| 943 def test_color(self): | |
| 944 i = UploadInstance(_REMOTE, 'ColorTestMalaterre.dcm')['ID'] | |
| 945 im = GetImage(_REMOTE, '/instances/%s/preview' % i) | |
| 946 self.assertEqual("RGB", im.mode) | |
| 947 self.assertEqual(41, im.size[0]) | |
| 948 self.assertEqual(41, im.size[1]) | |
| 949 | |
| 950 # http://effbot.org/zone/pil-comparing-images.htm | |
| 13 | 951 truth = Image.open(GetDatabasePath('ColorTestMalaterre.png')) |
| 11 | 952 self.assertTrue(ImageChops.difference(im, truth).getbbox() is None) |
| 953 | |
| 954 | |
| 12 | 955 def test_faking_ruby_put(self): |
| 956 UploadInstance(_REMOTE, 'Knee/T1/IM-0001-0001.dcm') | |
| 957 UploadInstance(_REMOTE, 'Brainix/Flair/IM-0001-0001.dcm') | |
| 958 self.assertEqual(2, len(DoGet(_REMOTE, '/patients'))) | |
| 959 a = DoGet(_REMOTE, '/patients')[0] | |
| 960 b = DoGet(_REMOTE, '/patients')[1] | |
| 961 self.assertEqual(0, DoGet(_REMOTE, '/patients/%s/protected' % a)) | |
| 962 DoGet(_REMOTE, '/patients/%s/protected' % a, data = { '_method' : 'PUT' }, body = '0') | |
| 963 self.assertEqual(0, DoGet(_REMOTE, '/patients/%s/protected' % a)) | |
| 964 DoGet(_REMOTE, '/patients/%s/protected' % a, data = { '_method' : 'PUT' }, body = '1') | |
| 965 self.assertEqual(1, DoGet(_REMOTE, '/patients/%s/protected' % a)) | |
| 966 DoGet(_REMOTE, '/patients/%s/protected' % a, data = { '_method' : 'PUT' }, body = '0') | |
| 967 self.assertEqual(0, DoGet(_REMOTE, '/patients/%s/protected' % a)) | |
| 968 | |
| 969 | |
| 970 def test_faking_ruby_delete(self): | |
| 971 UploadInstance(_REMOTE, 'Knee/T1/IM-0001-0001.dcm') | |
| 972 UploadInstance(_REMOTE, 'Brainix/Flair/IM-0001-0001.dcm') | |
| 973 self.assertEqual(2, len(DoGet(_REMOTE, '/patients'))) | |
| 974 a = DoGet(_REMOTE, '/patients')[0] | |
| 975 b = DoGet(_REMOTE, '/patients')[1] | |
| 976 DoGet(_REMOTE, '/patients/%s' % a, data = { '_method' : 'DELETE' }) | |
| 977 self.assertEqual(1, len(DoGet(_REMOTE, '/patients'))) | |
| 978 DoGet(_REMOTE, '/patients/%s' % b, data = { '_method' : 'DELETE' }) | |
| 979 self.assertEqual(0, len(DoGet(_REMOTE, '/patients'))) | |
| 980 | |
| 981 | |
| 982 def test_faking_google_put(self): | |
| 983 UploadInstance(_REMOTE, 'Knee/T1/IM-0001-0001.dcm') | |
| 984 UploadInstance(_REMOTE, 'Brainix/Flair/IM-0001-0001.dcm') | |
| 985 self.assertEqual(2, len(DoGet(_REMOTE, '/patients'))) | |
| 986 a = DoGet(_REMOTE, '/patients')[0] | |
| 987 b = DoGet(_REMOTE, '/patients')[1] | |
| 988 self.assertEqual(0, DoGet(_REMOTE, '/patients/%s/protected' % a)) | |
| 989 DoPost(_REMOTE, '/patients/%s/protected' % a, headers = { 'X-HTTP-Method-Override' : 'PUT' }, data = '0') | |
| 990 self.assertEqual(0, DoGet(_REMOTE, '/patients/%s/protected' % a)) | |
| 991 DoPost(_REMOTE, '/patients/%s/protected' % a, headers = { 'X-HTTP-Method-Override' : 'PUT' }, data = '1') | |
| 992 self.assertEqual(1, DoGet(_REMOTE, '/patients/%s/protected' % a)) | |
| 993 DoPost(_REMOTE, '/patients/%s/protected' % a, headers = { 'X-HTTP-Method-Override' : 'PUT' }, data = '0') | |
| 994 self.assertEqual(0, DoGet(_REMOTE, '/patients/%s/protected' % a)) | |
| 995 | |
| 996 | |
| 997 def test_faking_google_delete(self): | |
| 998 UploadInstance(_REMOTE, 'Knee/T1/IM-0001-0001.dcm') | |
| 999 UploadInstance(_REMOTE, 'Brainix/Flair/IM-0001-0001.dcm') | |
| 1000 self.assertEqual(2, len(DoGet(_REMOTE, '/patients'))) | |
| 1001 a = DoGet(_REMOTE, '/patients')[0] | |
| 1002 b = DoGet(_REMOTE, '/patients')[1] | |
| 1003 DoPost(_REMOTE, '/patients/%s' % a, headers = { 'X-HTTP-Method-Override' : 'DELETE' }) | |
| 1004 self.assertEqual(1, len(DoGet(_REMOTE, '/patients'))) | |
| 1005 DoPost(_REMOTE, '/patients/%s' % b, headers = { 'X-HTTP-Method-Override' : 'DELETE' }) | |
| 1006 self.assertEqual(0, len(DoGet(_REMOTE, '/patients'))) | |
| 1007 | |
| 1008 | |
| 1009 def test_lua(self): | |
| 1010 self.assertEqual(42, DoPost(_REMOTE, '/tools/execute-script', 'print(42)')) | |
| 1011 self.assertTrue(IsDefinedInLua(_REMOTE, 'PrintRecursive')) | |
| 1012 self.assertFalse(IsDefinedInLua(_REMOTE, 'HelloWorld')) | |
| 1013 | |
| 1014 | |
| 1015 def test_metadata(self): | |
| 1016 UploadInstance(_REMOTE, 'Knee/T1/IM-0001-0001.dcm') | |
| 1017 p = DoGet(_REMOTE, '/patients')[0] | |
| 1018 i = DoGet(_REMOTE, '/instances')[0] | |
| 1019 | |
| 1020 m = DoGet(_REMOTE, '/patients/%s/metadata' % p) | |
| 1021 self.assertEqual(1, len(m)) | |
| 1022 self.assertEqual('LastUpdate', m[0]) | |
| 1023 | |
| 1024 m = DoGet(_REMOTE, '/instances/%s/metadata' % i) | |
| 145 | 1025 self.assertEqual(8, len(m)) |
| 12 | 1026 self.assertTrue('IndexInSeries' in m) |
| 1027 self.assertTrue('ReceptionDate' in m) | |
| 1028 self.assertTrue('RemoteAET' in m) | |
|
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1029 self.assertTrue('Origin' in m) |
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1030 self.assertTrue('TransferSyntax' in m) |
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1031 self.assertTrue('SopClassUid' in m) |
| 145 | 1032 self.assertTrue('RemoteIP' in m) |
| 1033 self.assertTrue('HttpUsername' in m) | |
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1034 self.assertEqual(DoGet(_REMOTE, '/instances/%s/metadata/IndexInSeries' % i), 1) |
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1035 self.assertEqual(DoGet(_REMOTE, '/instances/%s/metadata/Origin' % i), 'RestApi') |
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1036 self.assertEqual(DoGet(_REMOTE, '/instances/%s/metadata/RemoteAET' % i), '') # None, received by REST API |
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1037 self.assertEqual(DoGet(_REMOTE, '/instances/%s/metadata/TransferSyntax' % i), '1.2.840.10008.1.2.4.91') # JPEG2k |
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1038 self.assertEqual(DoGet(_REMOTE, '/instances/%s/metadata/SopClassUid' % i), '1.2.840.10008.5.1.4.1.1.4') |
| 12 | 1039 |
| 1040 # Play with custom metadata | |
| 1041 DoPut(_REMOTE, '/patients/%s/metadata/5555' % p, 'coucou') | |
| 1042 m = DoGet(_REMOTE, '/patients/%s/metadata' % p) | |
| 1043 self.assertEqual(2, len(m)) | |
| 1044 self.assertTrue('LastUpdate' in m) | |
| 1045 self.assertTrue('5555' in m) | |
| 1046 self.assertEqual('coucou', DoGet(_REMOTE, '/patients/%s/metadata/5555' % p)) | |
| 1047 DoPut(_REMOTE, '/patients/%s/metadata/5555' % p, 'hello') | |
| 1048 self.assertEqual('hello', DoGet(_REMOTE, '/patients/%s/metadata/5555' % p)) | |
| 1049 DoDelete(_REMOTE, '/patients/%s/metadata/5555' % p) | |
| 1050 m = DoGet(_REMOTE, '/patients/%s/metadata' % p) | |
| 1051 self.assertEqual(1, len(m)) | |
| 1052 self.assertTrue('LastUpdate' in m) | |
| 13 | 1053 |
| 1054 | |
| 1055 def test_statistics(self): | |
| 1056 # Upload 16 instances | |
| 1057 for i in range(4): | |
| 1058 UploadInstance(_REMOTE, 'Brainix/Flair/IM-0001-000%d.dcm' % (i + 1)) | |
| 1059 UploadInstance(_REMOTE, 'Brainix/Epi/IM-0001-000%d.dcm' % (i + 1)) | |
| 1060 UploadInstance(_REMOTE, 'Knee/T1/IM-0001-000%d.dcm' % (i + 1)) | |
| 1061 UploadInstance(_REMOTE, 'Knee/T2/IM-0001-000%d.dcm' % (i + 1)) | |
| 1062 | |
| 1063 s = DoGet(_REMOTE, '/statistics') | |
| 1064 self.assertEqual(16, s['CountInstances']) | |
| 1065 self.assertEqual(2, s['CountPatients']) | |
| 1066 self.assertEqual(2, s['CountStudies']) | |
| 1067 self.assertEqual(4, s['CountSeries']) | |
| 1068 d = int(s['TotalUncompressedSize']) | |
| 1069 | |
| 1070 e = 0 | |
| 1071 for patient in DoGet(_REMOTE, '/patients'): | |
| 1072 s = DoGet(_REMOTE, '/patients/%s/statistics' % patient) | |
| 1073 self.assertEqual(8, s['CountInstances']) | |
| 1074 self.assertEqual(1, s['CountStudies']) | |
| 1075 self.assertEqual(2, s['CountSeries']) | |
| 1076 e += int(s['UncompressedSize']) | |
| 1077 | |
| 1078 for study in DoGet(_REMOTE, '/studies'): | |
| 1079 s = DoGet(_REMOTE, '/studies/%s/statistics' % study) | |
| 1080 self.assertEqual(8, s['CountInstances']) | |
| 1081 self.assertEqual(2, s['CountSeries']) | |
| 1082 e += int(s['UncompressedSize']) | |
| 1083 | |
| 1084 for series in DoGet(_REMOTE, '/series'): | |
| 1085 s = DoGet(_REMOTE, '/series/%s/statistics' % series) | |
| 1086 self.assertEqual(4, s['CountInstances']) | |
| 1087 e += int(s['UncompressedSize']) | |
| 1088 | |
| 1089 self.assertEqual(3 * d, e) | |
| 1090 | |
| 1091 | |
| 1092 def test_custom_attachment(self): | |
| 1093 UploadInstance(_REMOTE, 'Brainix/Flair/IM-0001-0001.dcm') | |
| 1094 patient = DoGet(_REMOTE, '/patients')[0] | |
| 1095 instance = DoGet(_REMOTE, '/instances')[0] | |
| 1096 size = int(DoGet(_REMOTE, '/patients/%s/statistics' % patient)['DiskSize']) | |
| 1097 self.assertEqual(size, int(DoGet(_REMOTE, '/statistics')['TotalDiskSize'])) | |
| 1098 | |
| 1099 self.assertEqual(0, len(DoGet(_REMOTE, '/patients/%s/attachments' % patient))) | |
| 1100 self.assertEqual(2, len(DoGet(_REMOTE, '/instances/%s/attachments' % instance))) | |
| 1101 self.assertTrue('dicom' in DoGet(_REMOTE, '/instances/%s/attachments' % instance)) | |
| 1102 self.assertTrue('dicom-as-json' in DoGet(_REMOTE, '/instances/%s/attachments' % instance)) | |
| 1103 | |
| 1104 self.assertRaises(Exception, lambda: DoPut(_REMOTE, '/patients/%s/attachments/22' % patient, 'hello')) | |
| 1105 hello = 'hellohellohellohellohellohellohellohellohello' | |
| 1106 DoPut(_REMOTE, '/patients/%s/attachments/1025' % patient, hello) | |
| 1107 self.assertEqual(int(DoGet(_REMOTE, '/patients/%s/statistics' % patient)['DiskSize']), | |
| 1108 int(DoGet(_REMOTE, '/statistics')['TotalDiskSize'])) | |
| 1109 self.assertEqual(int(DoGet(_REMOTE, '/patients/%s/statistics' % patient)['DiskSize']), | |
| 1110 size + int(DoGet(_REMOTE, '/patients/%s/attachments/1025/compressed-size' % patient))) | |
| 1111 | |
| 1112 DoPut(_REMOTE, '/patients/%s/attachments/1026' % patient, 'world') | |
| 1113 self.assertEqual(int(DoGet(_REMOTE, '/patients/%s/statistics' % patient)['DiskSize']), | |
| 1114 int(DoGet(_REMOTE, '/statistics')['TotalDiskSize'])) | |
| 1115 self.assertEqual(int(DoGet(_REMOTE, '/patients/%s/statistics' % patient)['DiskSize']), | |
| 1116 size + | |
| 1117 int(DoGet(_REMOTE, '/patients/%s/attachments/1025/compressed-size' % patient)) + | |
| 1118 int(DoGet(_REMOTE, '/patients/%s/attachments/1026/compressed-size' % patient))) | |
| 1119 | |
| 1120 self.assertEqual(2, len(DoGet(_REMOTE, '/patients/%s/attachments' % patient))) | |
| 1121 self.assertEqual(hello, DoGet(_REMOTE, '/patients/%s/attachments/1025/data' % patient)) | |
| 1122 self.assertEqual('world', DoGet(_REMOTE, '/patients/%s/attachments/1026/data' % patient)) | |
| 1123 DoPost(_REMOTE, '/patients/%s/attachments/1025/verify-md5' % patient) | |
| 1124 DoPost(_REMOTE, '/patients/%s/attachments/1026/verify-md5' % patient) | |
| 1125 DoPut(_REMOTE, '/patients/%s/attachments/1026' % patient, 'world2') | |
| 1126 self.assertEqual('world2', DoGet(_REMOTE, '/patients/%s/attachments/1026/data' % patient)) | |
| 1127 | |
| 1128 self.assertRaises(Exception, lambda: DoDelete(_REMOTE, '/instances/%s/attachments/dicom' % instance)) | |
| 1129 DoDelete(_REMOTE, '/patients/%s/attachments/1025' % patient) | |
| 1130 self.assertEqual(int(DoGet(_REMOTE, '/patients/%s/statistics' % patient)['DiskSize']), | |
| 1131 int(DoGet(_REMOTE, '/statistics')['TotalDiskSize'])) | |
| 1132 self.assertEqual(int(DoGet(_REMOTE, '/patients/%s/statistics' % patient)['DiskSize']), | |
| 1133 size + int(DoGet(_REMOTE, '/patients/%s/attachments/1026/compressed-size' % patient))) | |
| 1134 | |
| 1135 self.assertEqual(1, len(DoGet(_REMOTE, '/patients/%s/attachments' % patient))) | |
| 1136 DoDelete(_REMOTE, '/patients/%s/attachments/1026' % patient) | |
| 1137 self.assertEqual(0, len(DoGet(_REMOTE, '/patients/%s/attachments' % patient))) | |
| 1138 | |
| 1139 self.assertEqual(int(DoGet(_REMOTE, '/patients/%s/statistics' % patient)['DiskSize']), size) | |
| 1140 self.assertEqual(size, int(DoGet(_REMOTE, '/statistics')['TotalDiskSize'])) | |
| 1141 | |
| 1142 | |
| 1143 def test_incoming_storescu(self): | |
| 1144 self.assertEqual(0, len(DoGet(_REMOTE, '/patients'))) | |
| 45 | 1145 subprocess.check_call([ FindExecutable('storescu'), |
|
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1146 _REMOTE['Server'], str(_REMOTE['DicomPort']), |
| 13 | 1147 GetDatabasePath('ColorTestImageJ.dcm') ]) |
| 1148 self.assertEqual(1, len(DoGet(_REMOTE, '/patients'))) | |
| 1149 | |
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1150 i = DoGet(_REMOTE, '/instances') |
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1151 self.assertEqual(1, len(i)) |
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1152 m = DoGet(_REMOTE, '/instances/%s/metadata' % i[0]) |
| 145 | 1153 self.assertEqual(8, len(m)) |
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1154 self.assertTrue('IndexInSeries' in m) |
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1155 self.assertTrue('ReceptionDate' in m) |
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1156 self.assertTrue('RemoteAET' in m) |
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1157 self.assertTrue('Origin' in m) |
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1158 self.assertTrue('TransferSyntax' in m) |
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1159 self.assertTrue('SopClassUid' in m) |
| 145 | 1160 self.assertTrue('RemoteIP' in m) |
| 1161 self.assertTrue('CalledAET' in m) | |
|
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1162 self.assertEqual(DoGet(_REMOTE, '/instances/%s/metadata/IndexInSeries' % i[0]), 1) |
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1163 self.assertEqual(DoGet(_REMOTE, '/instances/%s/metadata/Origin' % i[0]), 'DicomProtocol') |
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1164 self.assertEqual(DoGet(_REMOTE, '/instances/%s/metadata/RemoteAET' % i[0]), 'STORESCU') |
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1165 self.assertEqual(DoGet(_REMOTE, '/instances/%s/metadata/TransferSyntax' % i[0]), '1.2.840.10008.1.2.1') |
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1166 self.assertEqual(DoGet(_REMOTE, '/instances/%s/metadata/SopClassUid' % i[0]), '1.2.840.10008.5.1.4.1.1.7') |
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1167 |
| 13 | 1168 |
| 1169 def test_incoming_findscu(self): | |
| 1170 UploadInstance(_REMOTE, 'Multiframe.dcm') | |
| 1171 UploadInstance(_REMOTE, 'ColorTestImageJ.dcm') | |
| 1172 | |
| 1173 i = CallFindScu([ '-k', '0008,0052=PATIENT', '-k', '0010,0010' ]) | |
| 1174 patientNames = re.findall('\(0010,0010\).*?\[(.*?)\]', i) | |
| 1175 self.assertEqual(2, len(patientNames)) | |
| 1176 self.assertTrue('Test Patient BG ' in patientNames) | |
| 1177 self.assertTrue('Anonymized' in patientNames) | |
| 1178 | |
| 1179 i = CallFindScu([ '-k', '0008,0052=SERIES', '-k', '0008,0021' ]) | |
| 1180 series = re.findall('\(0008,0021\).*?\[\s*(.*?)\s*\]', i) | |
| 1181 self.assertEqual(2, len(series)) | |
| 1182 self.assertTrue('20070208' in series) | |
| 1183 self.assertTrue('19980312' in series) | |
| 1184 | |
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1185 i = CallFindScu([ '-k', '0008,0052=SERIES', '-k', '0008,0021', '-k', 'ModalitiesInStudy=MR\\XA' ]) |
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1186 series = re.findall('\(0008,0021\).*?\[\s*(.*?)\s*\]', i) |
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1187 self.assertEqual(1, len(series)) |
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1188 self.assertTrue('19980312' in series) |
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1189 |
| 13 | 1190 i = CallFindScu([ '-k', '0008,0052=SERIES', '-k', 'PatientName=Anonymized' ]) |
| 1191 series = re.findall('\(0010,0010\).*?\[\s*(.*?)\s*\]', i) | |
| 1192 self.assertEqual(1, len(series)) | |
| 1193 | |
| 1194 # Test the "CaseSentitivePN" flag (false by default) | |
| 1195 i = CallFindScu([ '-k', '0008,0052=SERIES', '-k', 'PatientName=anonymized' ]) | |
| 1196 series = re.findall('\(0010,0010\).*?\[\s*(.*?)\s*\]', i) | |
| 1197 self.assertEqual(1, len(series)) | |
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1198 |
| 70 | 1199 # Test range search (buggy if Orthanc <= 0.9.6) |
| 1200 i = CallFindScu([ '-k', '0008,0052=STUDY', '-k', 'StudyDate=19980312-' ]) | |
| 1201 studies = re.findall('\(0008,0020\).*?\[\s*(.*?)\s*\]', i) | |
| 1202 self.assertEqual(2, len(studies)) | |
| 1203 self.assertTrue('20070208' in studies) | |
| 1204 self.assertTrue('19980312' in studies) | |
| 1205 i = CallFindScu([ '-k', '0008,0052=STUDY', '-k', 'StudyDate=19980312-19980312' ]) | |
| 1206 studies = re.findall('\(0008,0020\).*?\[\s*(.*?)\s*\]', i) | |
| 1207 self.assertEqual(1, len(studies)) | |
| 1208 self.assertTrue('19980312' in studies) | |
| 1209 i = CallFindScu([ '-k', '0008,0052=STUDY', '-k', 'StudyDate=-19980312' ]) | |
| 1210 studies = re.findall('\(0008,0020\).*?\[\s*(.*?)\s*\]', i) | |
| 1211 self.assertEqual(1, len(studies)) | |
| 1212 self.assertTrue('19980312' in studies) | |
| 13 | 1213 |
| 1214 | |
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1215 def test_incoming_findscu_2(self): |
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1216 # This test fails if "LookupMode_DatabaseOnly" is used |
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1217 # (sequences are not available in this mode, and only main |
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1218 # DICOM tags are returned) |
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1219 UploadInstance(_REMOTE, 'Multiframe.dcm') |
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1220 UploadInstance(_REMOTE, 'ColorTestImageJ.dcm') |
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1221 |
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1222 # Test returning sequence values (only since Orthanc 0.9.5) |
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1223 i = CallFindScu([ '-k', '0008,0052=SERIES', '-k', '0008,2112' ]) # "ColorTestImageJ" has this sequence tag |
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1224 sequences = re.findall('\(0008,2112\)', i) |
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1225 self.assertEqual(1, len(sequences)) |
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1226 |
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1227 # Test returning a non-main DICOM tag, |
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1228 # "SecondaryCaptureDeviceID" (0018,1010), whose value is |
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1229 # "MEDPC" in "ColorTestImageJ.dcm" |
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1230 i = CallFindScu([ '-k', '0008,0052=SERIES', '-k', '0018,1010' ]) |
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1231 tags = re.findall('\(0018,1010\).*MEDPC', i) |
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1232 self.assertEqual(1, len(tags)) |
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1233 |
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1234 |
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1235 def test_incoming_findscu_3(self): |
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1236 # This test fails if "LookupMode_DatabaseOnly" or |
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1237 # "LookupMode_DiskOnAnswer" is used, as |
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1238 # "SecondaryCaptureDeviceID" (0018,1010) is not a main DICOM |
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1239 # tag, as thus a constraint cannot be applied to it |
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1240 UploadInstance(_REMOTE, 'ColorTestImageJ.dcm') |
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1241 |
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1242 i = CallFindScu([ '-k', '0008,0052=SERIES', '-k', '0018,1010=MEDPC' ]) |
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1243 sequences = re.findall('\(0018,1010\)', i) |
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1244 self.assertEqual(1, len(sequences)) |
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1245 |
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1246 |
| 13 | 1247 def test_incoming_movescu(self): |
| 1248 UploadInstance(_REMOTE, 'Multiframe.dcm') | |
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1249 |
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1250 # No matching patient, so no job is created |
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1251 self.assertEqual(0, len(DoGet(_LOCAL, '/patients'))) |
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1252 CallMoveScu([ '--patient', '-k', '0008,0052=PATIENT', '-k', 'PatientID=none' ]) |
| 13 | 1253 self.assertEqual(0, len(DoGet(_LOCAL, '/patients'))) |
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1254 |
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1255 # 1 Matching patient, track the job |
| 138 | 1256 self.assertTrue(MonitorJob(_REMOTE, lambda: CallMoveScu([ |
| 1257 '--patient', | |
| 1258 '-k', '0008,0052=PATIENT', | |
| 1259 '-k', 'PatientID=12345678' | |
| 1260 ]))) | |
| 13 | 1261 self.assertEqual(1, len(DoGet(_LOCAL, '/patients'))) |
| 1262 | |
| 1263 | |
| 1264 def test_findscu(self): | |
| 1265 i = UploadInstance(_REMOTE, 'DummyCT.dcm')['ID'] | |
| 1266 j = UploadInstance(_REMOTE, 'Issue22.dcm')['ID'] | |
| 1267 k = UploadInstance(_REMOTE, 'ColorTestImageJ.dcm')['ID'] | |
| 1268 DoPost(_REMOTE, '/modalities/orthanctest/store', str(i), 'text/plain') | |
| 1269 | |
| 1270 # Test the "find-patient" level | |
| 1271 p = DoPost(_REMOTE, '/modalities/orthanctest/find-patient', { }) | |
| 1272 self.assertEqual(1, len(p)) | |
| 1273 self.assertEqual('ozp00SjY2xG', p[0]['PatientID']) | |
| 1274 | |
| 1275 # Test wildcards constraints. The "LO" value representation | |
| 1276 # for PatientID is always case-sensitive, but the "PN" for | |
| 1277 # PatientName might depend on the implementation: | |
| 1278 # "GenerateConfigurationForTests.py" will force it to be case | |
| 1279 # insensitive (which was the default until Orthanc 0.8.6). | |
| 1280 p = DoPost(_REMOTE, '/modalities/orthanctest/find-patient', { 'PatientName' : 'K*' }) | |
| 1281 self.assertEqual(1, len(p)) | |
| 1282 | |
| 1283 p = DoPost(_REMOTE, '/modalities/orthanctest/find-patient', { 'PatientName' : 'k*' }) | |
| 1284 self.assertEqual(1, len(p)) | |
| 1285 | |
| 1286 p = DoPost(_REMOTE, '/modalities/orthanctest/find-patient', { 'PatientID' : 'ozp*' }) | |
| 1287 self.assertEqual(1, len(p)) | |
| 1288 | |
| 1289 p = DoPost(_REMOTE, '/modalities/orthanctest/find-patient', { 'PatientID' : 'o?p*' }) | |
| 1290 self.assertEqual(1, len(p)) | |
| 1291 | |
| 1292 p = DoPost(_REMOTE, '/modalities/orthanctest/find-patient', { 'PatientID' : '0?q*' }) | |
| 1293 self.assertEqual(0, len(p)) | |
| 1294 | |
| 1295 p = DoPost(_REMOTE, '/modalities/orthanctest/find-patient', { 'PatientName' : 'B*' }) | |
| 1296 self.assertEqual(0, len(p)) | |
| 1297 | |
| 1298 p = DoPost(_REMOTE, '/modalities/orthanctest/find-patient', { 'PatientName' : 'b*' }) | |
| 1299 self.assertEqual(0, len(p)) | |
| 1300 | |
| 1301 DoPost(_REMOTE, '/modalities/orthanctest/store', str(j), 'text/plain') | |
| 1302 DoPost(_REMOTE, '/modalities/orthanctest/store', str(k), 'text/plain') | |
| 1303 DoPost(_REMOTE, '/modalities/orthanctest/find-patient', { }) | |
| 1304 self.assertEqual(3, len(DoPost(_REMOTE, '/modalities/orthanctest/find-patient', { }))) | |
| 1305 | |
| 1306 p = DoPost(_REMOTE, '/modalities/orthanctest/find-patient', { 'PatientName' : 'A*' }) | |
| 1307 self.assertEqual(2, len(p)) | |
| 1308 | |
| 1309 # Test the "find-study" level. This is the instance "ColorTestImageJ.dcm" | |
| 1310 s = DoPost(_REMOTE, '/modalities/orthanctest/find-study', { 'PatientID' : 'B9uTHKOZ' }) | |
| 1311 self.assertEqual(1, len(s)) | |
| 1312 self.assertEqual('20070208', s[0]['StudyDate']) | |
| 1313 | |
| 1314 # Test range searches | |
| 1315 t = DoPost(_REMOTE, '/modalities/orthanctest/find-study', { 'PatientID' : 'B9uTHKOZ', | |
| 1316 'StudyDate' : '-20070101' }) | |
| 1317 self.assertEqual(0, len(t)) | |
| 1318 | |
| 1319 t = DoPost(_REMOTE, '/modalities/orthanctest/find-study', { 'PatientID' : 'B9uTHKOZ', | |
| 1320 'StudyDate' : '20090101-' }) | |
| 1321 self.assertEqual(0, len(t)) | |
| 1322 | |
| 1323 t = DoPost(_REMOTE, '/modalities/orthanctest/find-study', { 'PatientID' : 'B9uTHKOZ', | |
| 1324 'StudyDate' : '20070101-' }) | |
| 1325 self.assertEqual(1, len(t)) | |
| 1326 | |
| 1327 t = DoPost(_REMOTE, '/modalities/orthanctest/find-study', { 'PatientID' : 'B9uTHKOZ', | |
| 1328 'StudyDate' : '-20090101' }) | |
| 1329 self.assertEqual(1, len(t)) | |
| 1330 | |
| 1331 t = DoPost(_REMOTE, '/modalities/orthanctest/find-study', { 'PatientID' : 'B9uTHKOZ', | |
| 1332 'StudyDate' : '20070207-20070207' }) | |
| 1333 self.assertEqual(0, len(t)) | |
| 1334 | |
| 1335 t = DoPost(_REMOTE, '/modalities/orthanctest/find-study', { 'PatientID' : 'B9uTHKOZ', | |
| 1336 'StudyDate' : '20070208-20070208' }) | |
| 1337 self.assertEqual(1, len(t)) | |
| 1338 | |
| 1339 t = DoPost(_REMOTE, '/modalities/orthanctest/find-study', { 'PatientID' : 'B9uTHKOZ', | |
| 1340 'StudyDate' : '20070209-20070209' }) | |
| 1341 self.assertEqual(0, len(t)) | |
| 1342 | |
| 1343 # Test the ModalitiesInStudy tag | |
| 1344 t = DoPost(_REMOTE, '/modalities/orthanctest/find-study', { | |
| 1345 'PatientID' : 'B9uTHKOZ', | |
| 1346 'ModalitiesInStudy' : 'US' }) | |
| 1347 self.assertEqual(0, len(t)) | |
| 1348 | |
| 1349 t = DoPost(_REMOTE, '/modalities/orthanctest/find-study', { | |
| 1350 'PatientID' : 'B9uTHKOZ', | |
| 1351 'ModalitiesInStudy' : 'CT' }) | |
| 1352 self.assertEqual(1, len(t)) | |
| 1353 | |
| 1354 t = DoPost(_REMOTE, '/modalities/orthanctest/find-study', { | |
| 1355 'PatientID' : 'B9uTHKOZ', | |
| 1356 'ModalitiesInStudy' : 'US\\CT' }) | |
| 1357 self.assertEqual(1, len(t)) | |
| 1358 | |
| 1359 # Test the "find-series" level | |
| 1360 t = DoPost(_REMOTE, '/modalities/orthanctest/find-series', { | |
| 1361 'PatientID' : 'B9uTHKOZ', | |
| 1362 'StudyInstanceUID' : s[0]['StudyInstanceUID'] }) | |
| 1363 self.assertEqual(1, len(t)) | |
| 1364 | |
| 1365 # Test "\" separator | |
| 1366 t = DoPost(_REMOTE, '/modalities/orthanctest/find-series', { | |
| 1367 'PatientID' : 'B9uTHKOZ', | |
| 1368 'StudyInstanceUID' : s[0]['StudyInstanceUID'], | |
| 1369 'Modality' : 'MR\\CT\\US' }) | |
| 1370 self.assertEqual(1, len(t)) | |
| 1371 | |
| 1372 t = DoPost(_REMOTE, '/modalities/orthanctest/find-series', { | |
| 1373 'PatientID' : 'B9uTHKOZ', | |
| 1374 'StudyInstanceUID' : s[0]['StudyInstanceUID'], | |
| 1375 'Modality' : 'MR\\US' }) | |
| 1376 self.assertEqual(0, len(t)) | |
| 1377 | |
| 1378 | |
| 1379 def test_update_modalities(self): | |
| 1380 try: | |
| 1381 DoDelete(_REMOTE, '/modalities/toto') | |
| 1382 except: | |
| 1383 pass | |
| 1384 try: | |
| 1385 DoDelete(_REMOTE, '/modalities/tata') | |
| 1386 except: | |
| 1387 pass | |
| 1388 self.assertRaises(Exception, lambda: DoGet(_REMOTE, '/modalities/toto')) | |
| 1389 DoPut(_REMOTE, '/modalities/toto', [ "STORESCP", "localhost", 2000 ]) | |
| 116 | 1390 DoPut(_REMOTE, '/modalities/tata', [ "STORESCP", "localhost", 2000, 'MedInria' ]) # check backward compatiblity with obsolete manufacturer |
| 1391 DoDelete(_REMOTE, '/modalities/tata') | |
| 124 | 1392 DoPut(_REMOTE, '/modalities/tata', [ "STORESCP", "localhost", 2000, 'GenericNoUniversalWildcard' ]) |
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1393 DoDelete(_REMOTE, '/modalities/tata') |
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1394 DoPut(_REMOTE, '/modalities/tata', [ "STORESCP", "localhost", 2000, 'GenericNoWildcardInDates' ]) |
| 128 | 1395 modalitiesReadback = DoGet(_REMOTE, '/modalities?expand') |
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1396 self.assertEqual('STORESCP', modalitiesReadback['tata']['AET']) |
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1397 self.assertEqual('localhost', modalitiesReadback['tata']['Host']) |
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1398 self.assertEqual(2000, modalitiesReadback['tata']['Port']) |
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1399 self.assertEqual('GenericNoWildcardInDates', modalitiesReadback['tata']['Manufacturer']) |
| 116 | 1400 self.assertRaises(Exception, lambda: DoPut(_REMOTE, '/modalities/toto', [ "STORESCP", "localhost", 2000, 'InvalidManufacturerName' ])) |
| 13 | 1401 self.assertTrue('store' in DoGet(_REMOTE, '/modalities/toto')) |
| 1402 self.assertTrue('store' in DoGet(_REMOTE, '/modalities/tata')) | |
| 1403 DoDelete(_REMOTE, '/modalities/toto') | |
| 1404 DoDelete(_REMOTE, '/modalities/tata') | |
| 1405 self.assertRaises(Exception, lambda: DoGet(_REMOTE, '/modalities/toto')) | |
| 1406 self.assertRaises(Exception, lambda: DoGet(_REMOTE, '/modalities/tata')) | |
| 1407 | |
| 1408 | |
| 1409 def test_update_peers(self): | |
| 1410 # curl -X PUT http://localhost:8042/peers/toto -d '["http://localhost:8042/"]' -v | |
| 1411 try: | |
| 1412 DoDelete(_REMOTE, '/peers/toto') | |
| 1413 except: | |
| 1414 pass | |
| 1415 try: | |
| 1416 DoDelete(_REMOTE, '/peers/tata') | |
| 1417 except: | |
| 1418 pass | |
| 1419 self.assertRaises(Exception, lambda: DoGet(_REMOTE, '/peers/toto')) | |
| 1420 DoPut(_REMOTE, '/peers/toto', [ 'http://localhost:8042/' ]) | |
| 214 | 1421 DoPut(_REMOTE, '/peers/tata', { 'Url': 'http://localhost:8042/', |
| 1422 'Username': 'user', | |
| 1423 'Password' : 'pass', | |
| 1424 'RemoteSelf' : 'self' }) | |
| 128 | 1425 self.assertTrue('tata' in DoGet(_REMOTE, '/peers')) |
| 1426 peersReadback = DoGet(_REMOTE, '/peers?expand') | |
| 1427 self.assertEqual('http://localhost:8042/', peersReadback['tata']['Url']) | |
| 1428 self.assertEqual('user', peersReadback['tata']['Username']) | |
| 214 | 1429 |
| 1430 if IsOrthancVersionAbove(_REMOTE, 1, 5, 4): | |
| 1431 self.assertEqual(None, peersReadback['tata']['Password']) # make sure no sensitive data is included | |
| 1432 self.assertFalse(peersReadback['tata']['Pkcs11']) # make sure no sensitive data is included | |
| 1433 self.assertEqual('self', peersReadback['tata']['RemoteSelf']) | |
| 1434 else: | |
| 1435 self.assertFalse('Password' in peersReadback['tata']) # make sure no sensitive data is included | |
| 1436 self.assertFalse('Pkcs11' in peersReadback['tata']) # make sure no sensitive data is included | |
| 1437 self.assertFalse('RemoteSelf' in peersReadback['tata']) | |
| 1438 | |
| 128 | 1439 self.assertFalse('CertificateFile' in peersReadback['tata']) # make sure no sensitive data is included |
| 1440 self.assertFalse('CertificateKeyFile' in peersReadback['tata']) # make sure no sensitive data is included | |
| 1441 self.assertFalse('CertificateKeyPassword' in peersReadback['tata']) # make sure no sensitive data is included | |
| 214 | 1442 |
| 13 | 1443 self.assertRaises(Exception, lambda: DoPut(_REMOTE, '/peers/toto', [ 'http://localhost:8042/', 'a' ])) |
| 1444 self.assertRaises(Exception, lambda: DoPut(_REMOTE, '/peers/toto', [ 'http://localhost:8042/', 'a', 'b', 'c' ])) | |
| 1445 self.assertTrue('store' in DoGet(_REMOTE, '/peers/toto')) | |
| 1446 self.assertTrue('store' in DoGet(_REMOTE, '/peers/tata')) | |
| 1447 DoDelete(_REMOTE, '/peers/toto') | |
| 1448 DoDelete(_REMOTE, '/peers/tata') | |
| 1449 self.assertRaises(Exception, lambda: DoGet(_REMOTE, '/peers/toto')) | |
| 1450 self.assertRaises(Exception, lambda: DoGet(_REMOTE, '/peers/tata')) | |
| 1451 | |
| 1452 | |
| 1453 def test_mesterhazy_modification(self): | |
| 1454 # When I modify a series ( eg. curl | |
| 1455 # http://localhost:8042/series/uidhere/modify -X POST -d | |
| 1456 # '{"Replace":{"SeriesDate":"19990101"}}' ) the modified | |
| 1457 # series is added to a new Study, instead of the existing | |
| 1458 # Study. Fixed in Orthanc 0.7.5 | |
| 1459 | |
| 1460 u = UploadInstance(_REMOTE, 'DummyCT.dcm') | |
| 1461 study = 'b9c08539-26f93bde-c81ab0d7-bffaf2cb-a4d0bdd0' | |
| 1462 series = 'f2635388-f01d497a-15f7c06b-ad7dba06-c4c599fe' | |
| 1463 | |
| 1464 modified = DoPost(_REMOTE, '/series/%s/modify' % series, | |
| 1465 json.dumps({ "Replace" : { "SeriesDate" : "19990101" }})) | |
| 1466 | |
| 1467 self.assertEqual(study, DoGet(_REMOTE, '/series/%s' % modified['ID']) ['ParentStudy']) | |
| 1468 | |
| 1469 | |
| 1470 def test_create(self): | |
| 1471 i = DoPost(_REMOTE, '/tools/create-dicom', | |
| 1472 json.dumps({ | |
| 1473 'PatientName' : 'Jodogne', | |
| 1474 'Modality' : 'CT', | |
| 58 | 1475 'SOPClassUID' : '1.2.840.10008.5.1.4.1.1.1', |
| 13 | 1476 'PixelData' : 'data:image/png;base64,iVBORw0KGgoAAAANSUhEUgAAAAUAAAAFCAYAAACNbyblAAAAHElEQVQI12P4//8/w38GIAXDIBKE0DHxgljNBAAO9TXL0Y4OHwAAAABJRU5ErkJggg==' # red dot in RGBA |
| 1477 })) | |
| 1478 | |
| 1479 self.assertEqual('Jodogne', DoGet(_REMOTE, '/instances/%s/content/PatientName' % i['ID']).strip()) | |
| 1480 self.assertEqual('CT', DoGet(_REMOTE, '/instances/%s/content/Modality' % i['ID']).strip()) | |
| 1481 | |
| 1482 png = GetImage(_REMOTE, '/instances/%s/preview' % i['ID']) | |
| 1483 self.assertEqual((5, 5), png.size) | |
| 1484 | |
| 38 | 1485 j = DoGet(_REMOTE, i['Path']) |
| 1486 self.assertEqual('Instance', j['Type']) | |
| 1487 self.assertEqual(j['ID'], i['ID']) | |
| 1488 | |
| 13 | 1489 |
| 1490 def test_pilates(self): | |
| 1491 # "SCU failed error when accessing orthanc with osirix" by | |
| 1492 # Pilates Agentur (Mar 10, 2014 at 9:33 PM) | |
| 1493 i = UploadInstance(_REMOTE, 'PilatesArgenturGEUltrasoundOsiriX.dcm')['ID'] | |
| 1494 self.assertEqual(0, len(DoGet(_LOCAL, '/patients'))) | |
| 1495 j = DoPost(_REMOTE, '/modalities/orthanctest/store', str(i), 'text/plain') | |
| 1496 self.assertEqual(1, len(DoGet(_LOCAL, '/patients'))) | |
| 1497 | |
| 1498 | |
| 1499 def test_shared_tags(self): | |
| 1500 a = UploadInstance(_REMOTE, 'Knee/T1/IM-0001-0001.dcm')['ID'] | |
| 1501 b = UploadInstance(_REMOTE, 'Knee/T1/IM-0001-0002.dcm')['ID'] | |
| 1502 p = DoGet(_REMOTE, '/patients')[0] | |
| 1503 | |
| 1504 self.assertTrue('0010,0010' in DoGet(_REMOTE, '/patients/%s/shared-tags' % p)) | |
| 1505 self.assertTrue('PatientName' in DoGet(_REMOTE, '/patients/%s/shared-tags?simplify' % p)) | |
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1506 self.assertTrue('0010,0010' in DoGet(_REMOTE, '/patients/%s/shared-tags?short' % p)) |
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1507 |
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1508 self.assertEqual('KNEE', DoGet(_REMOTE, '/patients/%s/shared-tags' % p)['0010,0010']['Value']) |
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1509 self.assertEqual('KNEE', DoGet(_REMOTE, '/patients/%s/shared-tags?simplify' % p)['PatientName']) |
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1510 self.assertEqual('KNEE', DoGet(_REMOTE, '/patients/%s/shared-tags?short' % p)['0010,0010']) |
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1511 |
| 13 | 1512 self.assertTrue('0008,1030' in DoGet(_REMOTE, '/patients/%s/shared-tags' % p)) |
| 1513 self.assertTrue('StudyDescription' in DoGet(_REMOTE, '/patients/%s/shared-tags?simplify' % p)) | |
| 1514 self.assertTrue('0008,103e' in DoGet(_REMOTE, '/patients/%s/shared-tags' % p)) | |
| 1515 self.assertTrue('SeriesDescription' in DoGet(_REMOTE, '/patients/%s/shared-tags?simplify' % p)) | |
| 1516 self.assertFalse('0008,0018' in DoGet(_REMOTE, '/patients/%s/shared-tags' % p)) | |
| 1517 self.assertFalse('SOPInstanceUID' in DoGet(_REMOTE, '/patients/%s/shared-tags?simplify' % p)) | |
| 1518 | |
| 1519 self.assertTrue('0008,0018' in DoGet(_REMOTE, '/instances/%s/tags' % a)) | |
| 1520 self.assertTrue('SOPInstanceUID' in DoGet(_REMOTE, '/instances/%s/tags?simplify' % a)) | |
| 1521 | |
| 1522 | |
| 1523 def test_modules(self): | |
| 1524 a = UploadInstance(_REMOTE, 'Knee/T1/IM-0001-0001.dcm')['ID'] | |
| 1525 p = DoGet(_REMOTE, '/patients')[0] | |
| 1526 s = DoGet(_REMOTE, '/studies')[0] | |
| 1527 t = DoGet(_REMOTE, '/series')[0] | |
| 1528 | |
| 1529 self.assertTrue('0010,0010' in DoGet(_REMOTE, '/patients/%s/module' % p)) | |
| 1530 self.assertTrue('PatientName' in DoGet(_REMOTE, '/patients/%s/module?simplify' % p)) | |
| 1531 self.assertTrue('0010,0010' in DoGet(_REMOTE, '/studies/%s/module-patient' % p)) | |
| 1532 self.assertTrue('PatientName' in DoGet(_REMOTE, '/studies/%s/module-patient?simplify' % p)) | |
| 1533 self.assertTrue('0008,1030' in DoGet(_REMOTE, '/studies/%s/module' % s)) | |
| 1534 self.assertTrue('StudyDescription' in DoGet(_REMOTE, '/studies/%s/module?simplify' % s)) | |
| 1535 self.assertTrue('0008,103e' in DoGet(_REMOTE, '/series/%s/module' % p)) | |
| 1536 self.assertTrue('SeriesDescription' in DoGet(_REMOTE, '/series/%s/module?simplify' % p)) | |
| 1537 self.assertTrue('0008,0018' in DoGet(_REMOTE, '/instances/%s/module' % a)) | |
| 1538 self.assertTrue('SOPInstanceUID' in DoGet(_REMOTE, '/instances/%s/module?simplify' % a)) | |
| 1539 | |
| 1540 | |
| 1541 def test_auto_directory(self): | |
| 1542 a = UploadInstance(_REMOTE, 'Knee/T1/IM-0001-0001.dcm')['ID'] | |
| 1543 self.assertTrue('now' in DoGet(_REMOTE, '/tools')) | |
| 1544 self.assertTrue('dicom-conformance' in DoGet(_REMOTE, '/tools')) | |
|
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|
1545 self.assertTrue('invalidate-tags' in DoGet(_REMOTE, '/tools')) |
| 13 | 1546 self.assertTrue(len(DoGet(_REMOTE, '/tools/dicom-conformance')) > 1000) |
| 1547 self.assertTrue('orthanctest' in DoGet(_REMOTE, '/modalities')) | |
| 1548 self.assertTrue('echo' in DoGet(_REMOTE, '/modalities/orthanctest')) | |
| 1549 self.assertTrue('find' in DoGet(_REMOTE, '/modalities/orthanctest')) | |
| 1550 self.assertTrue('find-instance' in DoGet(_REMOTE, '/modalities/orthanctest')) | |
| 1551 self.assertTrue('find-patient' in DoGet(_REMOTE, '/modalities/orthanctest')) | |
| 1552 self.assertTrue('find-series' in DoGet(_REMOTE, '/modalities/orthanctest')) | |
| 1553 self.assertTrue('find-study' in DoGet(_REMOTE, '/modalities/orthanctest')) | |
| 1554 self.assertTrue('store' in DoGet(_REMOTE, '/modalities/orthanctest')) | |
| 1555 self.assertTrue('store' in DoGet(_REMOTE, '/peers/peer')) | |
| 1556 self.assertTrue('matlab' in DoGet(_REMOTE, '/instances/%s/frames/0' % a)) | |
| 79 | 1557 self.assertTrue('raw' in DoGet(_REMOTE, '/instances/%s/frames/0' % a)) |
| 13 | 1558 self.assertRaises(Exception, lambda: DoGet(_REMOTE, '/tools/nope')) |
| 28 | 1559 self.assertRaises(Exception, lambda: DoGet(_REMOTE, '/nope')) |
| 1560 self.assertRaises(Exception, lambda: DoGet(_REMOTE, '/nope/nope.html')) | |
| 1561 self.assertEqual(404, DoGetRaw(_REMOTE, '/nope')[0].status) | |
| 1562 self.assertEqual(404, DoGetRaw(_REMOTE, '/nope/nope.html')[0].status) | |
| 13 | 1563 |
| 1564 | |
| 1565 def test_echo(self): | |
| 1566 DoPost(_REMOTE, '/modalities/orthanctest/echo') | |
| 1567 | |
| 1568 | |
| 1569 def test_xml(self): | |
| 1570 json = DoGet(_REMOTE, '/tools', headers = { 'accept' : 'application/json' }) | |
| 1571 xml = minidom.parseString(DoGet(_REMOTE, '/tools', headers = { 'accept' : 'application/xml' })) | |
| 1572 items = xml.getElementsByTagName('root')[0].getElementsByTagName('item') | |
| 1573 self.assertEqual(len(items), len(json)) | |
| 1574 | |
| 1575 self.assertTrue('dicom-conformance' in json) | |
| 1576 | |
| 1577 ok = False | |
| 1578 for i in items: | |
| 1579 if i.childNodes[0].data == 'dicom-conformance': | |
| 1580 ok = True | |
| 1581 self.assertTrue(ok) | |
| 1582 | |
| 1583 | |
|
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1584 def test_googlecode_issue_16(self): |
| 13 | 1585 i = UploadInstance(_REMOTE, 'Issue16.dcm')['ID'] |
| 1586 t = DoGet(_REMOTE, '/instances/%s/tags?simplify' % i)['FrameIncrementPointer'] | |
| 1587 self.assertEqual('0018,1063', t) | |
| 1588 | |
| 1589 | |
|
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diff
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|
1590 def test_googlecode_issue_22(self): |
| 13 | 1591 s = UploadInstance(_REMOTE, 'Issue22.dcm')['ID'] |
| 1592 a = [ | |
| 1593 "f804691f62197040438f4627c6b994f1", # Frame 0 | |
| 1594 "c69eee9a51eea3e8611e82e578897254", | |
| 1595 "315666be83e2d0111c77bc0996d84901", | |
| 1596 "3e27aa959d911172c48a1436443c72b1", | |
| 1597 "958642c9e7e9d232d3869faff546058c", | |
| 1598 "5e7ea8e3e4230cae707d143481355c59", | |
| 1599 "eda37f83558d858a596175aed8b2ad47", | |
| 1600 "486713bd2895c4ecbe0e97715ac7f80a", | |
| 1601 "091ef729eb169e67da8a0faa9631f9a8", | |
| 1602 "5aa2b8c7ffe0a483efaa8e12417686ca", | |
| 1603 "e2f39e85896fe58876654b94cd0b5013", | |
| 1604 "6fd2129e4950abbe1be053bc814d5da8", | |
| 1605 "c3331a8ba7a757f3d423735ab7fa81f9", | |
| 1606 "746f808582156734dd6b6fdfd3a0b72c", | |
| 1607 "8075ea2b227a70c60ea6b7b75a6bb190", | |
| 1608 "806b8b3e300c615099c11a5ec23465aa", | |
| 1609 "7c836aa298ba6eef96434579af631a11", | |
| 1610 "a0357dc9f4f72d73a885c33d7c287446", | |
| 1611 "f25ba3be1cc7d7fad95706adc199ea7d", | |
| 1612 "8b114c526b8cbed6cad8a3248b7b480c", | |
| 1613 "44e6670f127e612a2b4aa60a0d207698", | |
| 1614 "b8945f90fe02facf2ace24ca1ecbe0a5", | |
| 1615 "95c796c2fa8f59018b15cf2987b1f79b", | |
| 1616 "ce0a51ab30224205b44920221dc27351", # Frame 23 | |
| 1617 ] | |
| 1618 | |
| 1619 self.assertEqual(24, len(DoGet(_REMOTE, '/instances/%s/frames' % s))) | |
| 1620 self.assertRaises(Exception, lambda: DoGet(_REMOTE, '/instances/%s/frames/24/preview' % s)) | |
| 1621 | |
| 1622 for i in range(len(a)): | |
| 1623 self.assertEqual(a[i], ComputeMD5(DoGet(_REMOTE, '/instances/%s/frames/%d/preview' % (s, i)))) | |
| 1624 | |
| 1625 | |
|
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|
1626 def test_googlecode_issue_19(self): |
|
21
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|
1627 # This is an image with "YBR_FULL" photometric interpretation, it is not supported by Orthanc |
| 13 | 1628 # gdcmconv -i /home/jodogne/DICOM/GdcmDatabase/US_DataSet/HDI5000_US/3EAF5E01 -w -o Issue19.dcm |
| 1629 | |
| 1630 a = UploadInstance(_REMOTE, 'Issue19.dcm')['ID'] | |
|
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|
1631 self.assertRaises(Exception, lambda: DoGet(_REMOTE, '/instances/941ad3c8-05d05b88-560459f9-0eae0e20-6cddd533/preview')) |
| 13 | 1632 |
| 1633 | |
|
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|
1634 def test_googlecode_issue_37(self): |
| 13 | 1635 # Same test for issues 35 and 37. Fixed in Orthanc 0.9.1 |
| 1636 u = UploadInstance(_REMOTE, 'Beaufix/IM-0001-0001.dcm')['ID'] | |
| 1637 | |
| 1638 a = DoPost(_REMOTE, '/tools/find', { 'Level' : 'Series', | |
| 1639 'CaseSensitive' : True, | |
| 1640 'Query' : { 'StationName' : 'SMR4-MP3' }}) | |
| 1641 self.assertEqual(1, len(a)) | |
| 14 | 1642 |
| 1643 | |
| 1644 def test_rest_find(self): | |
| 1645 # Upload 8 instances | |
| 1646 for i in range(2): | |
| 1647 UploadInstance(_REMOTE, 'Brainix/Flair/IM-0001-000%d.dcm' % (i + 1)) | |
| 1648 UploadInstance(_REMOTE, 'Brainix/Epi/IM-0001-000%d.dcm' % (i + 1)) | |
| 1649 UploadInstance(_REMOTE, 'Knee/T1/IM-0001-000%d.dcm' % (i + 1)) | |
| 1650 UploadInstance(_REMOTE, 'Knee/T2/IM-0001-000%d.dcm' % (i + 1)) | |
| 1651 | |
| 1652 a = DoPost(_REMOTE, '/tools/find', { 'Level' : 'Patient', | |
| 1653 'CaseSensitive' : False, | |
|
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1654 'Query' : { 'PatientName' : 'BRAINIX' }}) |
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1655 self.assertEqual(1, len(a)) |
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1656 |
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1657 a = DoPost(_REMOTE, '/tools/find', { 'Level' : 'Patient', |
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1658 'CaseSensitive' : False, |
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1659 'Query' : { 'PatientName' : 'BRAINIX\\KNEE\\NOPE' }}) |
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1660 self.assertEqual(2, len(a)) |
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1661 |
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1662 a = DoPost(_REMOTE, '/tools/find', { 'Level' : 'Patient', |
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1663 'CaseSensitive' : False, |
| 14 | 1664 'Query' : { 'PatientName' : '*n*' }}) |
| 1665 self.assertEqual(2, len(a)) | |
| 1666 | |
| 1667 a = DoPost(_REMOTE, '/tools/find', { 'Level' : 'Patient', | |
| 1668 'CaseSensitive' : True, | |
| 1669 'Query' : { 'PatientName' : '*n*' }}) | |
| 1670 self.assertEqual(0, len(a)) | |
| 1671 | |
| 1672 a = DoPost(_REMOTE, '/tools/find', { 'Expand' : True, | |
| 1673 'Level' : 'Patient', | |
| 1674 'CaseSensitive' : False, | |
| 1675 'Query' : { 'PatientName' : '*ne*' }}) | |
| 1676 self.assertEqual(1, len(a)) | |
| 1677 self.assertEqual('20080822', a[0]['MainDicomTags']['PatientBirthDate']) | |
| 1678 | |
| 1679 a = DoPost(_REMOTE, '/tools/find', { 'Level' : 'Patient', | |
| 1680 'CaseSensitive' : True, | |
| 1681 'Query' : { 'PatientName' : '*ne*' }}) | |
| 1682 self.assertEqual(0, len(a)) | |
| 1683 | |
| 1684 a = DoPost(_REMOTE, '/tools/find', { 'Level' : 'Study', | |
| 1685 'CaseSensitive' : True, | |
| 1686 'Query' : { 'PatientName' : '*NE*' }}) | |
| 1687 self.assertEqual(1, len(a)) | |
| 1688 | |
| 1689 a = DoPost(_REMOTE, '/tools/find', { 'Level' : 'Series', | |
| 1690 'CaseSensitive' : True, | |
| 1691 'Query' : { 'PatientName' : '*NE*' }}) | |
| 1692 self.assertEqual(2, len(a)) | |
| 1693 | |
| 1694 a = DoPost(_REMOTE, '/tools/find', { 'Level' : 'Instance', | |
| 1695 'CaseSensitive' : True, | |
| 1696 'Query' : { 'PatientName' : '*NE*' }}) | |
| 1697 self.assertEqual(4, len(a)) | |
| 1698 | |
| 1699 a = DoPost(_REMOTE, '/tools/find', { 'Level' : 'Patient', 'Query' : { }}) | |
| 1700 self.assertEqual(2, len(a)) | |
| 1701 | |
| 1702 a = DoPost(_REMOTE, '/tools/find', { 'Level' : 'Study', 'Query' : { }}) | |
| 1703 self.assertEqual(2, len(a)) | |
| 1704 | |
| 1705 a = DoPost(_REMOTE, '/tools/find', { 'Level' : 'Series', 'Query' : { }}) | |
| 1706 self.assertEqual(4, len(a)) | |
| 1707 | |
| 1708 a = DoPost(_REMOTE, '/tools/find', { 'Level' : 'Instance', 'Query' : { }}) | |
| 1709 self.assertEqual(8, len(a)) | |
| 1710 | |
|
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1711 a = DoPost(_REMOTE, '/tools/find', { 'Level' : 'Study', |
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1712 'Expand' : True, |
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1713 'Query' : { 'StudyDate' : '20061201-20061201' }}) |
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1714 self.assertEqual(1, len(a)) |
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1715 self.assertEqual('BRAINIX', a[0]['PatientMainDicomTags']['PatientName']) |
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1716 |
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1717 a = DoPost(_REMOTE, '/tools/find', { 'Level' : 'Study', |
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1718 'Expand' : True, |
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1719 'Query' : { 'StudyDate' : '20061201-20091201' }}) |
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1720 self.assertEqual(2, len(a)) |
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1721 for i in range(2): |
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1722 self.assertTrue(a[i]['PatientMainDicomTags']['PatientName'] in ['BRAINIX', 'KNEE']) |
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1723 |
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1724 a = DoPost(_REMOTE, '/tools/find', { 'Level' : 'Study', |
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1725 'Query' : { 'StudyDate' : '20061202-20061202' }}) |
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1726 self.assertEqual(0, len(a)) |
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1727 |
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1728 a = DoPost(_REMOTE, '/tools/find', { 'Level' : 'Study', |
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1729 'Expand' : True, |
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1730 'Query' : { 'StudyDate' : '-20061201' }}) |
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1731 self.assertEqual(1, len(a)) |
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1732 self.assertEqual('BRAINIX', a[0]['PatientMainDicomTags']['PatientName']) |
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1733 |
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1734 a = DoPost(_REMOTE, '/tools/find', { 'Level' : 'Study', |
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1735 'Expand' : True, |
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1736 'Query' : { 'StudyDate' : '-20051201' }}) |
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1737 self.assertEqual(0, len(a)) |
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1739 a = DoPost(_REMOTE, '/tools/find', { 'Level' : 'Study', |
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1740 'Expand' : True, |
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1741 'Query' : { 'StudyDate' : '20061201-' }}) |
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1742 self.assertEqual(2, len(a)) |
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1743 for i in range(2): |
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1744 self.assertTrue(a[i]['PatientMainDicomTags']['PatientName'] in ['BRAINIX', 'KNEE']) |
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1745 |
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1746 a = DoPost(_REMOTE, '/tools/find', { 'Level' : 'Study', |
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1747 'Expand' : True, |
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1748 'Query' : { 'StudyDate' : '20061202-' }}) |
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1749 self.assertEqual(1, len(a)) |
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1750 self.assertEqual('KNEE', a[0]['PatientMainDicomTags']['PatientName']) |
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1751 |
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1752 a = DoPost(_REMOTE, '/tools/find', { 'Level' : 'Study', |
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1753 'Expand' : True, |
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1754 'Query' : { 'StudyDate' : '20080819-' }}) |
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1755 self.assertEqual(1, len(a)) |
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1756 self.assertEqual('KNEE', a[0]['PatientMainDicomTags']['PatientName']) |
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1757 |
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1758 a = DoPost(_REMOTE, '/tools/find', { 'Level' : 'Study', |
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1759 'Expand' : True, |
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1760 'Query' : { 'StudyDate' : '20080820-' }}) |
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1761 self.assertEqual(0, len(a)) |
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1762 |
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1763 |
| 14 | 1764 |
| 1765 def test_rest_query_retrieve(self): | |
| 1766 self.assertEqual(0, len(DoGet(_REMOTE, '/patients'))) | |
| 1767 | |
| 1768 # Upload 8 instances | |
| 1769 for i in range(2): | |
| 1770 UploadInstance(_REMOTE, 'Brainix/Flair/IM-0001-000%d.dcm' % (i + 1)) | |
| 1771 UploadInstance(_REMOTE, 'Brainix/Epi/IM-0001-000%d.dcm' % (i + 1)) | |
| 1772 UploadInstance(_REMOTE, 'Knee/T1/IM-0001-000%d.dcm' % (i + 1)) | |
| 1773 UploadInstance(_REMOTE, 'Knee/T2/IM-0001-000%d.dcm' % (i + 1)) | |
| 1774 | |
| 1775 self.assertEqual(2, len(DoGet(_REMOTE, '/patients'))) | |
| 1776 for p in DoGet(_REMOTE, '/patients'): | |
| 1777 DoPost(_REMOTE, '/modalities/orthanctest/store', p) | |
| 1778 DoDelete(_REMOTE, '/patients/%s' % p) | |
| 1779 | |
| 1780 for q in DoGet(_REMOTE, '/queries'): | |
| 1781 DoDelete(_REMOTE, '/queries/%s' % q) | |
| 1782 | |
| 1783 self.assertEqual(0, len(DoGet(_REMOTE, '/patients'))) | |
| 1784 self.assertEqual(0, len(DoGet(_REMOTE, '/queries'))) | |
| 1785 a = DoPost(_REMOTE, '/modalities/orthanctest/query', { 'Level' : 'Series', | |
| 27 | 1786 'Query' : { |
| 1787 'PatientName' : '*NE*', | |
| 1788 'StudyDate' : '*', | |
| 1789 }})['ID'] | |
| 14 | 1790 self.assertEqual(1, len(DoGet(_REMOTE, '/queries'))) |
| 1791 | |
| 1792 b = DoGet(_REMOTE, '/queries/%s' % a) | |
| 1793 self.assertTrue('answers' in b) | |
| 1794 self.assertTrue('level' in b) | |
| 1795 self.assertTrue('modality' in b) | |
| 1796 self.assertTrue('query' in b) | |
| 1797 self.assertTrue('retrieve' in b) | |
| 1798 self.assertEqual('Series', DoGet(_REMOTE, '/queries/%s/level' % a)) | |
| 1799 self.assertEqual('orthanctest', DoGet(_REMOTE, '/queries/%s/modality' % a)) | |
| 1800 | |
| 1801 q = DoGet(_REMOTE, '/queries/%s/query?simplify' % a) | |
| 27 | 1802 self.assertEqual(2, len(q)) |
| 14 | 1803 self.assertTrue('PatientName' in q) |
| 27 | 1804 self.assertTrue('StudyDate' in q) |
| 14 | 1805 self.assertEqual('*NE*', q['PatientName']) |
| 27 | 1806 self.assertEqual('*', q['StudyDate']) |
| 14 | 1807 |
| 1808 self.assertEqual(2, len(DoGet(_REMOTE, '/queries/%s/answers' % a))) | |
| 1809 | |
| 1810 s = DoGet(_REMOTE, '/queries/%s/answers/0' % a) | |
| 1811 self.assertTrue('content' in s) | |
| 1812 self.assertTrue('retrieve' in s) | |
| 1813 | |
| 1814 s = DoGet(_REMOTE, '/queries/%s/answers/0/content?simplify' % a) | |
| 1815 self.assertEqual('887', s['PatientID']) | |
| 1816 self.assertEqual('2.16.840.1.113669.632.20.121711.10000160881', s['StudyInstanceUID']) | |
| 1817 | |
| 1818 self.assertEqual(0, len(DoGet(_REMOTE, '/patients'))) | |
| 1819 DoPost(_REMOTE, '/queries/%s/answers/0/retrieve' % a, 'ORTHANC') | |
| 1820 self.assertEqual(1, len(DoGet(_REMOTE, '/patients'))) | |
| 1821 self.assertEqual(1, len(DoGet(_REMOTE, '/studies'))) | |
| 1822 self.assertEqual(1, len(DoGet(_REMOTE, '/series'))) | |
| 1823 self.assertEqual(2, len(DoGet(_REMOTE, '/instances'))) | |
| 1824 | |
| 112 | 1825 DoPost(_REMOTE, '/queries/%s/answers/1/retrieve' % a, 'ORTHANC', 'application/json') # make sure the issue #36 is fixed (query/retrieve Rest API: /retrieve route shall accept application/json content type) |
| 14 | 1826 self.assertEqual(1, len(DoGet(_REMOTE, '/patients'))) |
| 1827 self.assertEqual(1, len(DoGet(_REMOTE, '/studies'))) | |
| 1828 self.assertEqual(2, len(DoGet(_REMOTE, '/series'))) | |
| 1829 self.assertEqual(4, len(DoGet(_REMOTE, '/instances'))) | |
| 1830 | |
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1831 # New in Orthanc 1.4.3 |
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1832 s = DoGet(_REMOTE, '/queries/%s/answers?expand&simplify' % a) |
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1833 self.assertEqual(2, len(s)) |
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1834 for i in range(2): |
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1835 self.assertEqual('SERIES', s[i]['QueryRetrieveLevel']) |
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1836 self.assertEqual('887', s[i]['PatientID']) |
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1837 self.assertEqual('2.16.840.1.113669.632.20.121711.10000160881', s[i]['StudyInstanceUID']) |
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1838 |
| 14 | 1839 DoDelete(_REMOTE, '/queries/%s' % a) |
| 1840 self.assertEqual(0, len(DoGet(_REMOTE, '/queries'))) | |
| 1841 | |
| 1842 | |
| 1843 def test_parent(self): | |
| 1844 u = UploadInstance(_REMOTE, 'DummyCT.dcm')['ID'] | |
| 1845 patient = '6816cb19-844d5aee-85245eba-28e841e6-2414fae2' | |
| 1846 study = 'b9c08539-26f93bde-c81ab0d7-bffaf2cb-a4d0bdd0' | |
| 1847 series = 'f2635388-f01d497a-15f7c06b-ad7dba06-c4c599fe' | |
| 1848 instance = '66a662ce-7430e543-bad44d47-0dc5a943-ec7a538d' | |
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1849 self.assertEqual(instance, u) |
| 14 | 1850 |
| 1851 a = DoGet(_REMOTE, '/studies/%s/patient' % study) | |
| 1852 self.assertEqual('Patient', a['Type']) | |
| 1853 self.assertEqual(patient, a['ID']) | |
| 1854 | |
| 1855 a = DoGet(_REMOTE, '/series/%s/patient' % series) | |
| 1856 self.assertEqual('Patient', a['Type']) | |
| 1857 self.assertEqual(patient, a['ID']) | |
| 1858 | |
| 1859 a = DoGet(_REMOTE, '/series/%s/study' % series) | |
| 1860 self.assertEqual('Study', a['Type']) | |
| 1861 self.assertEqual(study, a['ID']) | |
| 1862 | |
| 1863 a = DoGet(_REMOTE, '/instances/%s/patient' % instance) | |
| 1864 self.assertEqual('Patient', a['Type']) | |
| 1865 self.assertEqual(patient, a['ID']) | |
| 1866 | |
| 1867 a = DoGet(_REMOTE, '/instances/%s/study' % instance) | |
| 1868 self.assertEqual('Study', a['Type']) | |
| 1869 self.assertEqual(study, a['ID']) | |
| 1870 | |
| 1871 a = DoGet(_REMOTE, '/instances/%s/series' % instance) | |
| 1872 self.assertEqual('Series', a['Type']) | |
| 1873 self.assertEqual(series, a['ID']) | |
| 1874 | |
| 1875 | |
| 1876 def test_shanon(self): | |
| 1877 def Anonymize(instance, replacements = {}): | |
| 119 | 1878 return DoPost(_REMOTE, '/instances/%s/anonymize' % instance, { |
| 1879 'Replace' : replacements, | |
| 1880 'Force' : True, | |
| 1881 }, 'application/json') | |
| 14 | 1882 |
| 1883 self.assertEqual(0, len(DoGet(_REMOTE, '/instances'))) | |
| 1884 u = UploadInstance(_REMOTE, 'DummyCT.dcm')['ID'] | |
| 1885 self.assertEqual(1, len(DoGet(_REMOTE, '/instances'))) | |
| 1886 | |
| 1887 tags = [ 'PatientID', 'StudyInstanceUID', 'SeriesInstanceUID', 'SOPInstanceUID', 'DeidentificationMethod' ] | |
| 1888 ids = [ 'ozp00SjY2xG', | |
| 1889 '1.2.840.113619.2.176.2025.1499492.7391.1171285944.390', | |
| 1890 '1.2.840.113619.2.176.2025.1499492.7391.1171285944.394', | |
| 1891 '1.2.840.113619.2.176.2025.1499492.7040.1171286242.109' ] | |
| 1892 | |
| 1893 a = ExtractDicomTags(Anonymize(u), tags) | |
| 1894 for i in range(4): | |
| 1895 self.assertNotEqual(ids[i], a[i]) | |
| 1896 self.assertTrue(a[4].startswith('Orthanc')) | |
| 1897 | |
| 1898 a = ExtractDicomTags(Anonymize(u, { 'PatientName' : 'toto' }), tags) | |
| 1899 for i in range(4): | |
| 1900 self.assertNotEqual(ids[i], a[i]) | |
| 1901 self.assertFalse(a[4].startswith('Orthanc')) | |
| 1902 | |
| 1903 a = ExtractDicomTags(Anonymize(u, { 'SOPInstanceUID' : 'instance' }), tags) | |
| 1904 self.assertEqual('instance', a[3]) | |
| 1905 self.assertFalse(a[4].startswith('Orthanc')) | |
| 1906 | |
| 1907 a = ExtractDicomTags(Anonymize(u, { 'SeriesInstanceUID' : 'series' }), tags) | |
| 1908 self.assertEqual('series', a[2]) | |
| 1909 self.assertFalse(a[4].startswith('Orthanc')) | |
| 1910 | |
| 1911 a = ExtractDicomTags(Anonymize(u, { 'StudyInstanceUID' : 'study' }), tags) | |
| 1912 self.assertEqual('study', a[1]) | |
| 1913 self.assertFalse(a[4].startswith('Orthanc')) | |
| 1914 | |
| 1915 a = ExtractDicomTags(Anonymize(u, { 'PatientID' : 'patient' }), tags) | |
| 1916 self.assertEqual('patient', a[0]) | |
| 1917 self.assertFalse(a[4].startswith('Orthanc')) | |
| 1918 | |
| 1919 a = ExtractDicomTags(Anonymize(u, { 'PatientID' : 'patient', | |
| 1920 'StudyInstanceUID' : 'study', | |
| 1921 'SeriesInstanceUID' : 'series', | |
| 1922 'SOPInstanceUID' : 'instance' }), tags) | |
| 1923 self.assertEqual('patient', a[0]) | |
| 1924 self.assertFalse(a[4].startswith('Orthanc')) | |
| 1925 | |
| 1926 self.assertEqual(1, len(DoGet(_REMOTE, '/instances'))) | |
| 1927 | |
| 1928 | |
| 1929 def test_shanon_2(self): | |
| 1930 def Modify(instance, replacements = {}): | |
| 119 | 1931 return DoPost(_REMOTE, '/instances/%s/modify' % instance, { |
| 1932 'Replace' : replacements, | |
| 1933 'Force': True, | |
| 1934 }, 'application/json') | |
| 14 | 1935 |
| 1936 self.assertEqual(0, len(DoGet(_REMOTE, '/instances'))) | |
| 1937 u = UploadInstance(_REMOTE, 'DummyCT.dcm')['ID'] | |
| 1938 self.assertEqual(1, len(DoGet(_REMOTE, '/instances'))) | |
| 1939 | |
| 1940 tags = [ 'PatientID', 'StudyInstanceUID', 'SeriesInstanceUID', 'SOPInstanceUID', 'DeidentificationMethod' ] | |
| 1941 ids = [ 'ozp00SjY2xG', | |
| 1942 '1.2.840.113619.2.176.2025.1499492.7391.1171285944.390', | |
| 1943 '1.2.840.113619.2.176.2025.1499492.7391.1171285944.394', | |
| 1944 '1.2.840.113619.2.176.2025.1499492.7040.1171286242.109' ] | |
| 1945 | |
| 1946 a = ExtractDicomTags(Modify(u), tags) | |
| 1947 self.assertEqual(ids[0], a[0]) | |
| 1948 self.assertEqual(ids[1], a[1]) | |
| 1949 self.assertEqual(ids[2], a[2]) | |
| 1950 self.assertNotEqual(ids[3], a[3]) | |
| 1951 self.assertEqual(0, len(a[4])) | |
| 1952 | |
| 1953 a = ExtractDicomTags(Modify(u, { 'SOPInstanceUID' : 'instance' }), tags) | |
| 1954 self.assertEqual(ids[0], a[0]) | |
| 1955 self.assertEqual(ids[1], a[1]) | |
| 1956 self.assertEqual(ids[2], a[2]) | |
| 1957 self.assertEqual('instance', a[3]) | |
| 1958 | |
| 1959 a = ExtractDicomTags(Modify(u, { 'SeriesInstanceUID' : 'series' }), tags) | |
| 1960 self.assertEqual(ids[0], a[0]) | |
| 1961 self.assertEqual(ids[1], a[1]) | |
| 1962 self.assertEqual('series', a[2]) | |
| 1963 self.assertNotEqual(ids[3], a[3]) | |
| 1964 | |
| 1965 a = ExtractDicomTags(Modify(u, { 'StudyInstanceUID' : 'study' }), tags) | |
| 1966 self.assertEqual(ids[0], a[0]) | |
| 1967 self.assertEqual('study', a[1]) | |
| 1968 self.assertNotEqual(ids[2], a[2]) | |
| 1969 self.assertNotEqual(ids[3], a[3]) | |
| 1970 | |
| 1971 a = ExtractDicomTags(Modify(u, { 'PatientID' : 'patient' }), tags) | |
| 1972 self.assertEqual('patient', a[0]) | |
| 1973 self.assertNotEqual(ids[1], a[1]) | |
| 1974 self.assertNotEqual(ids[2], a[2]) | |
| 1975 self.assertNotEqual(ids[3], a[3]) | |
| 1976 | |
| 1977 a = ExtractDicomTags(Modify(u, { 'PatientID' : 'patient', | |
| 1978 'StudyInstanceUID' : 'study', | |
| 1979 'SeriesInstanceUID' : 'series', | |
| 1980 'SOPInstanceUID' : 'instance' }), tags) | |
| 1981 self.assertEqual('patient', a[0]) | |
| 1982 self.assertEqual('study', a[1]) | |
| 1983 self.assertEqual('series', a[2]) | |
| 1984 self.assertEqual('instance', a[3]) | |
| 1985 | |
| 1986 self.assertEqual(1, len(DoGet(_REMOTE, '/instances'))) | |
| 1987 | |
| 1988 | |
| 1989 def test_instances_tags(self): | |
| 1990 a = UploadInstance(_REMOTE, 'Knee/T1/IM-0001-0001.dcm')['ID'] | |
| 1991 b = UploadInstance(_REMOTE, 'Knee/T2/IM-0001-0001.dcm')['ID'] | |
| 1992 #a = UploadInstance(_REMOTE, 'Cardiac/MR.X.1.2.276.0.7230010.3.1.4.2831157719.2256.1336386937.676343')['ID'] | |
| 1993 #b = UploadInstance(_REMOTE, 'Cardiac/MR.X.1.2.276.0.7230010.3.1.4.2831157719.2256.1336386925.676329')['ID'] | |
| 1994 | |
| 1995 i = DoGet(_REMOTE, '/patients/%s/instances-tags?simplify' % DoGet(_REMOTE, '/patients')[0]) | |
| 1996 self.assertEqual(2, len(i)) | |
| 1997 self.assertEqual('887', i[i.keys()[0]]['PatientID']) | |
| 1998 self.assertEqual('887', i[i.keys()[1]]['PatientID']) | |
| 1999 | |
| 2000 i = DoGet(_REMOTE, '/patients/%s/instances-tags?simplify' % DoGet(_REMOTE, '/studies')[0]) | |
| 2001 self.assertEqual(2, len(i)) | |
| 2002 self.assertEqual('887', i[i.keys()[0]]['PatientID']) | |
| 2003 self.assertEqual('887', i[i.keys()[1]]['PatientID']) | |
| 2004 | |
| 2005 self.assertEqual(2, len(DoGet(_REMOTE, '/series'))) | |
| 2006 i = DoGet(_REMOTE, '/patients/%s/instances-tags?simplify' % DoGet(_REMOTE, '/series')[0]) | |
| 2007 self.assertEqual(1, len(i)) | |
| 2008 self.assertEqual('887', i[i.keys()[0]]['PatientID']) | |
| 2009 | |
| 2010 i = DoGet(_REMOTE, '/patients/%s/instances-tags?simplify' % DoGet(_REMOTE, '/series')[1]) | |
| 2011 self.assertEqual(1, len(i)) | |
| 2012 self.assertEqual('887', i[i.keys()[0]]['PatientID']) | |
| 2013 | |
|
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2014 i = DoGet(_REMOTE, '/patients/%s/instances-tags?short' % DoGet(_REMOTE, '/series')[1]) |
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2015 self.assertEqual(1, len(i)) |
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2016 self.assertEqual('887', i[i.keys()[0]]['0010,0020']) |
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2017 |
| 14 | 2018 |
| 2019 def test_lookup(self): | |
| 2020 a = DoPost(_REMOTE, '/tools/lookup', 'ozp00SjY2xG') | |
| 2021 self.assertEqual(0, len(a)) | |
| 2022 | |
| 2023 UploadInstance(_REMOTE, 'DummyCT.dcm') | |
| 2024 | |
| 2025 a = DoPost(_REMOTE, '/tools/lookup', 'ozp00SjY2xG') | |
| 2026 self.assertEqual(1, len(a)) | |
| 2027 self.assertEqual('Patient', a[0]['Type']) | |
| 2028 self.assertEqual('6816cb19-844d5aee-85245eba-28e841e6-2414fae2', a[0]['ID']) | |
| 2029 self.assertEqual('/patients/%s' % a[0]['ID'], a[0]['Path']) | |
| 2030 | |
| 2031 a = DoPost(_REMOTE, '/tools/lookup', '1.2.840.113619.2.176.2025.1499492.7391.1171285944.390') | |
| 2032 self.assertEqual(1, len(a)) | |
| 2033 self.assertEqual('Study', a[0]['Type']) | |
| 2034 self.assertEqual('b9c08539-26f93bde-c81ab0d7-bffaf2cb-a4d0bdd0', a[0]['ID']) | |
| 2035 self.assertEqual('/studies/%s' % a[0]['ID'], a[0]['Path']) | |
| 2036 | |
| 2037 a = DoPost(_REMOTE, '/tools/lookup', '1.2.840.113619.2.176.2025.1499492.7391.1171285944.394') | |
| 2038 self.assertEqual(1, len(a)) | |
| 2039 self.assertEqual('Series', a[0]['Type']) | |
| 2040 self.assertEqual('f2635388-f01d497a-15f7c06b-ad7dba06-c4c599fe', a[0]['ID']) | |
| 2041 self.assertEqual('/series/%s' % a[0]['ID'], a[0]['Path']) | |
| 2042 | |
| 2043 a = DoPost(_REMOTE, '/tools/lookup', '1.2.840.113619.2.176.2025.1499492.7040.1171286242.109') | |
| 2044 self.assertEqual(1, len(a)) | |
| 2045 self.assertEqual('Instance', a[0]['Type']) | |
| 2046 self.assertEqual('66a662ce-7430e543-bad44d47-0dc5a943-ec7a538d', a[0]['ID']) | |
| 2047 self.assertEqual('/instances/%s' % a[0]['ID'], a[0]['Path']) | |
| 2048 | |
| 2049 DropOrthanc(_REMOTE) | |
| 2050 a = DoPost(_REMOTE, '/tools/lookup', '3113719P') | |
| 2051 self.assertEqual(0, len(a)) | |
| 2052 | |
| 15 | 2053 |
| 2054 def test_autorouting(self): | |
| 2055 knee1 = 'Knee/T1/IM-0001-0001.dcm' | |
| 2056 knee2 = 'Knee/T2/IM-0001-0002.dcm' | |
| 2057 other = 'Brainix/Flair/IM-0001-0001.dcm' | |
| 2058 | |
| 2059 # Check that this version is >= 0.8.0 | |
| 2060 self.assertTrue(IsDefinedInLua(_REMOTE, '_InitializeJob')) | |
| 2061 self.assertTrue('orthanctest' in DoGet(_REMOTE, '/modalities')) | |
| 2062 | |
| 2063 UploadInstance(_REMOTE, knee1) | |
| 2064 self.assertEqual(0, len(DoGet(_LOCAL, '/instances'))) | |
| 2065 | |
| 2066 DropOrthanc(_REMOTE) | |
| 2067 DropOrthanc(_LOCAL) | |
| 174 | 2068 InstallLuaScriptFromPath(_REMOTE, 'Lua/Autorouting.lua') |
| 15 | 2069 UploadInstance(_REMOTE, knee1) |
| 2070 UploadInstance(_REMOTE, knee2) | |
| 2071 UploadInstance(_REMOTE, other) | |
| 2072 WaitEmpty(_REMOTE) | |
| 174 | 2073 UninstallLuaCallbacks(_REMOTE) |
| 15 | 2074 self.assertEqual(3, len(DoGet(_LOCAL, '/instances'))) |
| 2075 | |
| 2076 DropOrthanc(_REMOTE) | |
| 2077 DropOrthanc(_LOCAL) | |
| 174 | 2078 InstallLuaScriptFromPath(_REMOTE, 'Lua/AutoroutingConditional.lua') |
| 15 | 2079 UploadInstance(_REMOTE, knee1) |
| 2080 UploadInstance(_REMOTE, knee2) | |
| 2081 UploadInstance(_REMOTE, other) | |
| 2082 WaitEmpty(_REMOTE) | |
| 174 | 2083 UninstallLuaCallbacks(_REMOTE) |
| 15 | 2084 self.assertEqual(2, len(DoGet(_LOCAL, '/instances'))) |
| 2085 | |
| 2086 DropOrthanc(_REMOTE) | |
| 2087 DropOrthanc(_LOCAL) | |
| 174 | 2088 InstallLuaScriptFromPath(_REMOTE, 'Lua/AutoroutingModification.lua') |
| 15 | 2089 UploadInstance(_REMOTE, knee1) |
| 2090 WaitEmpty(_REMOTE) | |
| 174 | 2091 UninstallLuaCallbacks(_REMOTE) |
| 15 | 2092 i = DoGet(_LOCAL, '/instances') |
| 2093 self.assertEqual(1, len(i)) | |
| 2094 | |
| 2095 with tempfile.NamedTemporaryFile(delete = True) as f: | |
| 2096 f.write(DoGet(_LOCAL, '/instances/%s/file' % i[0])) | |
| 2097 f.flush() | |
| 45 | 2098 routed = subprocess.check_output([ FindExecutable('dcm2xml'), f.name ]) |
| 15 | 2099 self.assertEqual('My Medical Device', re.search('"StationName">(.*?)<', routed).group(1).strip()) |
| 2100 self.assertEqual(None, re.search('"MilitaryRank"', routed)) | |
| 2101 self.assertEqual(None, re.search('"0051,0010"', routed)) # A private tag | |
| 17 | 2102 |
| 2103 | |
| 2104 def test_storescu_rf(self): | |
| 2105 i = UploadInstance(_REMOTE, 'KarstenHilbertRF.dcm')['ID'] | |
| 2106 self.assertEqual(0, len(DoGet(_LOCAL, '/instances'))) | |
| 2107 j = DoPost(_REMOTE, '/modalities/orthanctest/store', str(i), 'text/plain') | |
| 2108 self.assertEqual(1, len(DoGet(_LOCAL, '/instances'))) | |
| 18 | 2109 |
| 2110 | |
| 2111 def test_anonymize_instance(self): | |
| 2112 def AnonymizeAndUpload(instanceId, parameters): | |
| 2113 return DoPost(_REMOTE, '/instances', DoPost(_REMOTE, '/instances/%s/anonymize' % instanceId, parameters, | |
| 2114 'application/json'), 'application/dicom')['ID'] | |
| 2115 | |
| 2116 def ModifyAndUpload(instanceId, parameters): | |
| 2117 return DoPost(_REMOTE, '/instances', DoPost(_REMOTE, '/instances/%s/modify' % instanceId, parameters, | |
| 2118 'application/json'), 'application/dicom')['ID'] | |
| 2119 | |
| 2120 a = UploadInstance(_REMOTE, 'PrivateMDNTags.dcm')['ID'] | |
| 2121 s1 = DoGet(_REMOTE, '/instances/%s/content/PatientName' % a) | |
| 2122 s2 = DoGet(_REMOTE, '/instances/%s/content/00e1-10c2' % a) # Some private tag | |
| 2123 s3 = DoGet(_REMOTE, '/instances/%s/content/StudyDescription' % a) | |
| 2124 s4 = DoGet(_REMOTE, '/instances/%s/content/SeriesDescription' % a) | |
| 2125 s5 = DoGet(_REMOTE, '/instances/%s/content/InstitutionName' % a) | |
| 2126 | |
| 2127 b = AnonymizeAndUpload(a, '{}') | |
| 2128 self.assertNotEqual(s1, DoGet(_REMOTE, '/instances/%s/content/PatientName' % b)) | |
| 2129 self.assertRaises(Exception, lambda: DoGet(_REMOTE, '/instances/%s/content/00e1-10c2' % b)) | |
| 2130 | |
| 2131 # Keep private tag (only OK since Orthanc 0.8.0) | |
| 2132 b = AnonymizeAndUpload(a, '{"Keep":["00e1-10c2"]}') | |
| 2133 self.assertNotEqual(s1, DoGet(_REMOTE, '/instances/%s/content/PatientName' % b)) | |
| 2134 self.assertEqual(s2, DoGet(_REMOTE, '/instances/%s/content/00e1-10c2' % b)) | |
| 2135 | |
| 2136 b = AnonymizeAndUpload(a, '{"Keep":["00e1,10c2","PatientName"]}') | |
| 2137 self.assertEqual(s1, DoGet(_REMOTE, '/instances/%s/content/PatientName' % b)) | |
| 2138 self.assertEqual(s2, DoGet(_REMOTE, '/instances/%s/content/00e1-10c2' % b)) | |
| 2139 | |
| 2140 b = AnonymizeAndUpload(a, '{"Keep":["PatientName"],"Replace":{"00e1,10c2":"Hello"}}') | |
| 2141 self.assertEqual(s1, DoGet(_REMOTE, '/instances/%s/content/PatientName' % b)) | |
| 2142 self.assertTrue(DoGet(_REMOTE, '/instances/%s/content/00e1-10c2' % b).startswith('Hello')) | |
| 2143 | |
| 2144 # Examples from the Wiki | |
|
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2145 b = AnonymizeAndUpload(a, '{"Replace":{"PatientName":"hello","0010-0020":"world"},"Keep":["StudyDescription", "SeriesDescription"],"KeepPrivateTags": true,"Force":true}') |
| 18 | 2146 self.assertEqual('hello', DoGet(_REMOTE, '/instances/%s/content/0010-0010' % b).strip()) |
| 2147 self.assertEqual('world', DoGet(_REMOTE, '/instances/%s/content/PatientID' % b).strip()) | |
| 2148 self.assertEqual(s3, DoGet(_REMOTE, '/instances/%s/content/0008,1030' % b)) | |
| 2149 self.assertEqual(s4, DoGet(_REMOTE, '/instances/%s/content/0008,103e' % b)) | |
| 2150 self.assertEqual(s4, DoGet(_REMOTE, '/instances/%s/content/0008-103E' % b)) | |
| 2151 self.assertEqual(s2, DoGet(_REMOTE, '/instances/%s/content/00e1-10c2' % b)) | |
| 2152 DoGet(_REMOTE, '/instances/%s/content/InstitutionName' % a) | |
| 2153 self.assertRaises(Exception, lambda: DoGet(_REMOTE, '/instances/%s/content/InstitutionName' % b)) | |
| 2154 | |
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2155 b = ModifyAndUpload(a, '{"Replace":{"PatientName":"hello","PatientID":"world"},"Remove":["InstitutionName"],"RemovePrivateTags": true,"Force":true}') |
| 18 | 2156 self.assertEqual('hello', DoGet(_REMOTE, '/instances/%s/content/0010-0010' % b).strip()) |
| 2157 self.assertEqual('world', DoGet(_REMOTE, '/instances/%s/content/PatientID' % b).strip()) | |
| 2158 self.assertEqual(s3, DoGet(_REMOTE, '/instances/%s/content/0008,1030' % b)) | |
| 2159 self.assertEqual(s4, DoGet(_REMOTE, '/instances/%s/content/0008,103e' % b)) | |
| 2160 self.assertRaises(Exception, lambda: DoGet(_REMOTE, '/instances/%s/content/00e1-10c2' % b)) | |
| 2161 self.assertRaises(Exception, lambda: DoGet(_REMOTE, '/instances/%s/content/InstitutionName' % b)) | |
| 2162 | |
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2163 b = ModifyAndUpload(a, '{"Replace":{"PatientName":"hello","PatientID":"world"},"Force":true}') |
| 18 | 2164 self.assertEqual('hello', DoGet(_REMOTE, '/instances/%s/content/0010-0010' % b).strip()) |
| 2165 self.assertEqual('world', DoGet(_REMOTE, '/instances/%s/content/PatientID' % b).strip()) | |
| 2166 self.assertEqual(s2, DoGet(_REMOTE, '/instances/%s/content/00e1,10c2' % b)) | |
| 2167 self.assertEqual(s3, DoGet(_REMOTE, '/instances/%s/content/0008,1030' % b)) | |
| 2168 self.assertEqual(s4, DoGet(_REMOTE, '/instances/%s/content/0008-103E' % b)) | |
| 2169 self.assertEqual(s5, DoGet(_REMOTE, '/instances/%s/content/InstitutionName' % b)) | |
| 2170 | |
| 2171 | |
| 2172 # Test modify non-existing | |
| 2173 i = DoPost(_REMOTE, '/tools/create-dicom', | |
| 2174 json.dumps({ | |
| 2175 'PatientName' : 'Jodogne', | |
| 2176 'Modality' : 'CT', | |
| 2177 }))['ID'] | |
| 2178 | |
| 2179 self.assertEqual('Jodogne', DoGet(_REMOTE, '/instances/%s/content/PatientName' % i).strip()) | |
| 2180 self.assertRaises(Exception, lambda: DoGet(_REMOTE, '/instances/%s/content/StudyDescription' % i)) | |
| 2181 self.assertEqual('CT', DoGet(_REMOTE, '/instances/%s/content/Modality' % i).strip()) | |
| 2182 | |
| 2183 b = ModifyAndUpload(i, '{"Replace":{"StudyDescription":"hello","Modality":"world"}}') | |
| 2184 self.assertEqual('Jodogne', DoGet(_REMOTE, '/instances/%s/content/PatientName' % b).strip()) | |
| 2185 self.assertEqual('hello', DoGet(_REMOTE, '/instances/%s/content/StudyDescription' % b).strip()) | |
| 2186 self.assertEqual('world', DoGet(_REMOTE, '/instances/%s/content/Modality' % b).strip()) | |
| 2187 | |
|
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2188 |
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2189 def test_incoming_jpeg(self): |
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2190 def storescu(image, acceptUnknownSopClassUid): |
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2191 if acceptUnknownSopClassUid: |
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2192 tmp = [ '-xf', GetDatabasePath('UnknownSopClassUid.cfg'), 'Default' ] |
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2193 else: |
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2194 tmp = [ '-xs' ] |
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2195 |
|
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2196 with open(os.devnull, 'w') as FNULL: |
|
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2197 subprocess.check_call([ FindExecutable('storescu') ] + tmp + |
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2198 [ _REMOTE['Server'], str(_REMOTE['DicomPort']), |
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2199 GetDatabasePath(image) ], |
|
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2200 stderr = FNULL) |
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2201 |
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2202 self.assertEqual(0, len(DoGet(_REMOTE, '/patients'))) |
| 174 | 2203 InstallLuaScriptFromPath(_REMOTE, 'Lua/TransferSyntaxDisable.lua') |
|
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2204 self.assertRaises(Exception, lambda: storescu('Knix/Loc/IM-0001-0001.dcm', False)) |
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2205 self.assertRaises(Exception, lambda: storescu('UnknownSopClassUid.dcm', True)) |
|
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2206 self.assertEqual(0, len(DoGet(_REMOTE, '/patients'))) |
| 174 | 2207 InstallLuaScriptFromPath(_REMOTE, 'Lua/TransferSyntaxEnable.lua') |
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2208 DoPost(_REMOTE, '/tools/execute-script', "print('All special transfer syntaxes are now accepted')") |
|
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2209 storescu('Knix/Loc/IM-0001-0001.dcm', False) |
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2210 storescu('UnknownSopClassUid.dcm', True) |
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2211 self.assertEqual(2, len(DoGet(_REMOTE, '/patients'))) |
|
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2212 |
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2213 |
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2214 def test_storescu_jpeg(self): |
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2215 self.assertEqual(0, len(DoGet(_REMOTE, '/exports')['Exports'])) |
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2216 |
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2217 knixStudy = 'b9c08539-26f93bde-c81ab0d7-bffaf2cb-a4d0bdd0' |
| 64 | 2218 i = UploadInstance(_REMOTE, 'Knix/Loc/IM-0001-0001.dcm')['ID'] |
| 2219 | |
| 2220 # This is JPEG lossless | |
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2221 self.assertEqual('1.2.840.10008.1.2.4.70', DoGet(_REMOTE, '/instances/%s/header' % i)['0002,0010']['Value']) |
| 64 | 2222 self.assertEqual('1.2.840.10008.1.2.4.70', DoGet(_REMOTE, '/instances/%s/header?simplify' % i)['TransferSyntaxUID']) |
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2223 self.assertEqual('1.2.840.10008.1.2.4.70', DoGet(_REMOTE, '/instances/%s/header?short' % i)['0002,0010']) |
| 64 | 2224 |
|
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2225 UploadInstance(_REMOTE, 'Knix/Loc/IM-0001-0002.dcm') |
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2226 UploadInstance(_REMOTE, 'Knix/Loc/IM-0001-0003.dcm') |
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2227 |
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2228 a = UploadInstance(_REMOTE, 'Brainix/Flair/IM-0001-0001.dcm')['ID'] |
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2229 b = UploadInstance(_REMOTE, 'ColorTestImageJ.dcm')['ID'] |
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2230 self.assertEqual(0, len(DoGet(_LOCAL, '/instances'))) |
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2231 DoPost(_REMOTE, '/modalities/orthanctest/store', [ knixStudy, a, b ]) |
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2232 self.assertEqual(5, len(DoGet(_LOCAL, '/instances'))) |
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2233 |
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2234 self.assertEqual(3, len(DoGet(_REMOTE, '/exports')['Exports'])) |
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2235 |
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2236 DropOrthanc(_REMOTE) |
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2237 self.assertEqual(0, len(DoGet(_REMOTE, '/exports')['Exports'])) |
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2238 |
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2239 |
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2240 def test_pixel_data(self): |
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2241 jpeg = UploadInstance(_REMOTE, 'Knix/Loc/IM-0001-0001.dcm')['ID'] |
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2242 color = UploadInstance(_REMOTE, 'ColorTestImageJ.dcm')['ID'] |
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2243 phenix = UploadInstance(_REMOTE, 'Phenix/IM-0001-0001.dcm')['ID'] |
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2244 |
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2245 phenixSize = 358 * 512 * 2 |
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2246 colorSize = 1000 * 1000 * 3 |
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2247 jpegSize = 51918 |
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2248 |
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2249 self.assertEqual(1, len(DoGet(_REMOTE, '/instances/%s/content/7fe0-0010' % phenix))) |
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tests of image decoding
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parents:
18
diff
changeset
|
2250 self.assertEqual(1, len(DoGet(_REMOTE, '/instances/%s/content/7fe0-0010' % color))) |
|
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tests of image decoding
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parents:
18
diff
changeset
|
2251 self.assertEqual(2, len(DoGet(_REMOTE, '/instances/%s/content/7fe0-0010' % jpeg))) |
|
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tests of image decoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
18
diff
changeset
|
2252 |
|
2a29bcff60a7
tests of image decoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
18
diff
changeset
|
2253 self.assertEqual(0, len(DoGet(_REMOTE, '/instances/%s/content/7fe0-0010/0' % jpeg))) |
|
2a29bcff60a7
tests of image decoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
18
diff
changeset
|
2254 self.assertEqual(jpegSize, len(DoGet(_REMOTE, '/instances/%s/content/7fe0-0010/1' % jpeg))) |
|
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tests of image decoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
18
diff
changeset
|
2255 |
|
2a29bcff60a7
tests of image decoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
18
diff
changeset
|
2256 self.assertEqual(phenixSize, len(DoGet(_REMOTE, '/instances/%s/content/7fe0-0010/0' % phenix))) |
|
2a29bcff60a7
tests of image decoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
18
diff
changeset
|
2257 self.assertEqual(colorSize, len(DoGet(_REMOTE, '/instances/%s/content/7fe0-0010/0' % color))) |
|
2a29bcff60a7
tests of image decoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
18
diff
changeset
|
2258 |
|
2a29bcff60a7
tests of image decoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
18
diff
changeset
|
2259 |
|
2a29bcff60a7
tests of image decoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
18
diff
changeset
|
2260 def test_decode_brainix(self): |
|
2a29bcff60a7
tests of image decoding
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parents:
18
diff
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|
2261 brainix = [ |
|
2a29bcff60a7
tests of image decoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
18
diff
changeset
|
2262 UploadInstance(_REMOTE, 'Brainix/Epi/IM-0001-0001.dcm')['ID'], # (*) |
|
2a29bcff60a7
tests of image decoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
18
diff
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|
2263 UploadInstance(_REMOTE, 'Formats/JpegLossless.dcm')['ID'], # JPEG-LS, same as (*) (since Orthanc 0.7.6) |
|
2a29bcff60a7
tests of image decoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
18
diff
changeset
|
2264 UploadInstance(_REMOTE, 'Formats/Jpeg.dcm')['ID'], # JPEG, same as (*) (since Orthanc 0.7.6) |
|
2a29bcff60a7
tests of image decoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
18
diff
changeset
|
2265 ] |
|
2a29bcff60a7
tests of image decoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
18
diff
changeset
|
2266 h = '6fb11b932d535c2be04beabd99793ff8' |
|
2a29bcff60a7
tests of image decoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
18
diff
changeset
|
2267 maxValue = 426.0 |
|
2a29bcff60a7
tests of image decoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
18
diff
changeset
|
2268 |
|
2a29bcff60a7
tests of image decoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
18
diff
changeset
|
2269 truth = Image.open(GetDatabasePath('Formats/Brainix.png')) |
|
2a29bcff60a7
tests of image decoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
18
diff
changeset
|
2270 for i in brainix: |
|
2a29bcff60a7
tests of image decoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
18
diff
changeset
|
2271 self.AssertSameImages(truth.getdata(), '/instances/%s/image-int16' % i) |
|
2a29bcff60a7
tests of image decoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
18
diff
changeset
|
2272 self.AssertSameImages(truth.getdata(), '/instances/%s/image-uint16' % i) |
|
2a29bcff60a7
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Sebastien Jodogne <s.jodogne@gmail.com>
parents:
18
diff
changeset
|
2273 |
|
2a29bcff60a7
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Sebastien Jodogne <s.jodogne@gmail.com>
parents:
18
diff
changeset
|
2274 truth2 = map(lambda x: min(255, x), truth.getdata()) |
|
2a29bcff60a7
tests of image decoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
18
diff
changeset
|
2275 for i in brainix: |
|
2a29bcff60a7
tests of image decoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
18
diff
changeset
|
2276 self.AssertSameImages(truth2, '/instances/%s/image-uint8' % i) |
|
2a29bcff60a7
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Sebastien Jodogne <s.jodogne@gmail.com>
parents:
18
diff
changeset
|
2277 |
|
2a29bcff60a7
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Sebastien Jodogne <s.jodogne@gmail.com>
parents:
18
diff
changeset
|
2278 truth2 = map(lambda x: x * 255.0 / maxValue, truth.getdata()) |
|
2a29bcff60a7
tests of image decoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
18
diff
changeset
|
2279 for i in brainix: |
|
2a29bcff60a7
tests of image decoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
18
diff
changeset
|
2280 self.AssertSameImages(truth2, '/instances/%s/preview' % i) |
|
2a29bcff60a7
tests of image decoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
18
diff
changeset
|
2281 |
|
2a29bcff60a7
tests of image decoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
18
diff
changeset
|
2282 for i in brainix: |
|
2a29bcff60a7
tests of image decoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
18
diff
changeset
|
2283 self.assertEqual(h, ComputeMD5(DoGet(_REMOTE, '/instances/%s/matlab' % i))) |
|
2a29bcff60a7
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Sebastien Jodogne <s.jodogne@gmail.com>
parents:
18
diff
changeset
|
2284 |
|
2a29bcff60a7
tests of image decoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
18
diff
changeset
|
2285 |
|
2a29bcff60a7
tests of image decoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
18
diff
changeset
|
2286 def test_decode_color(self): |
|
2a29bcff60a7
tests of image decoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
18
diff
changeset
|
2287 imagej = UploadInstance(_REMOTE, 'ColorTestImageJ.dcm')['ID'] |
|
2a29bcff60a7
tests of image decoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
18
diff
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|
2288 color = UploadInstance(_REMOTE, 'ColorTestMalaterre.dcm')['ID'] |
|
2a29bcff60a7
tests of image decoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
18
diff
changeset
|
2289 |
|
2a29bcff60a7
tests of image decoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
18
diff
changeset
|
2290 for i in [ imagej, color ]: |
|
2a29bcff60a7
tests of image decoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
18
diff
changeset
|
2291 for j in [ 'image-uint8', 'image-uint16', 'image-int16' ]: |
|
2a29bcff60a7
tests of image decoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
18
diff
changeset
|
2292 self.assertRaises(Exception, lambda: DoGet(_REMOTE, '/instances/%s/%s' % (i, j))) |
|
2a29bcff60a7
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Sebastien Jodogne <s.jodogne@gmail.com>
parents:
18
diff
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|
2293 |
|
2a29bcff60a7
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Sebastien Jodogne <s.jodogne@gmail.com>
parents:
18
diff
changeset
|
2294 self.assertEqual('c14c687f7a1ea9fe022479fc87c67274', ComputeMD5(DoGet(_REMOTE, '/instances/%s/preview' % imagej))) |
|
2a29bcff60a7
tests of image decoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
18
diff
changeset
|
2295 self.assertEqual('a87d122918a56f803bcfe9d2586b9125', ComputeMD5(DoGet(_REMOTE, '/instances/%s/preview' % color))) |
|
2a29bcff60a7
tests of image decoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
18
diff
changeset
|
2296 |
|
2a29bcff60a7
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Sebastien Jodogne <s.jodogne@gmail.com>
parents:
18
diff
changeset
|
2297 self.assertEqual('30cc46bfa7aba77a40e4178f6184c25a', ComputeMD5(DoGet(_REMOTE, '/instances/%s/matlab' % imagej))) |
|
2a29bcff60a7
tests of image decoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
18
diff
changeset
|
2298 self.assertEqual('ff195005cef06b59666fd220a9b4cd9a', ComputeMD5(DoGet(_REMOTE, '/instances/%s/matlab' % color))) |
|
2a29bcff60a7
tests of image decoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
18
diff
changeset
|
2299 |
|
2a29bcff60a7
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Sebastien Jodogne <s.jodogne@gmail.com>
parents:
18
diff
changeset
|
2300 |
|
2a29bcff60a7
tests of image decoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
18
diff
changeset
|
2301 def test_decode_rf(self): |
|
2a29bcff60a7
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Sebastien Jodogne <s.jodogne@gmail.com>
parents:
18
diff
changeset
|
2302 rf = UploadInstance(_REMOTE, 'KarstenHilbertRF.dcm')['ID'] |
|
2a29bcff60a7
tests of image decoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
18
diff
changeset
|
2303 truth = Image.open(GetDatabasePath('Formats/KarstenHilbertRF.png')) |
|
2a29bcff60a7
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Sebastien Jodogne <s.jodogne@gmail.com>
parents:
18
diff
changeset
|
2304 |
|
2a29bcff60a7
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Sebastien Jodogne <s.jodogne@gmail.com>
parents:
18
diff
changeset
|
2305 self.AssertSameImages(truth.getdata(), '/instances/%s/image-uint8' % rf) |
|
2a29bcff60a7
tests of image decoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
18
diff
changeset
|
2306 self.AssertSameImages(truth.getdata(), '/instances/%s/image-uint16' % rf) |
|
2a29bcff60a7
tests of image decoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
18
diff
changeset
|
2307 self.AssertSameImages(truth.getdata(), '/instances/%s/image-int16' % rf) |
|
2a29bcff60a7
tests of image decoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
18
diff
changeset
|
2308 self.AssertSameImages(truth.getdata(), '/instances/%s/preview' % rf) |
|
2a29bcff60a7
tests of image decoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
18
diff
changeset
|
2309 |
|
2a29bcff60a7
tests of image decoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
18
diff
changeset
|
2310 self.assertEqual('42254d70efd2f4a1b8f3455909689f0e', ComputeMD5(DoGet(_REMOTE, '/instances/%s/matlab' % rf))) |
|
2a29bcff60a7
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Sebastien Jodogne <s.jodogne@gmail.com>
parents:
18
diff
changeset
|
2311 |
|
2a29bcff60a7
tests of image decoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
18
diff
changeset
|
2312 |
|
2a29bcff60a7
tests of image decoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
18
diff
changeset
|
2313 def test_decode_multiframe(self): |
|
2a29bcff60a7
tests of image decoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
18
diff
changeset
|
2314 mf = UploadInstance(_REMOTE, 'Multiframe.dcm')['ID'] |
|
2a29bcff60a7
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Sebastien Jodogne <s.jodogne@gmail.com>
parents:
18
diff
changeset
|
2315 |
|
2a29bcff60a7
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Sebastien Jodogne <s.jodogne@gmail.com>
parents:
18
diff
changeset
|
2316 # Test the first frame |
|
2a29bcff60a7
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Sebastien Jodogne <s.jodogne@gmail.com>
parents:
18
diff
changeset
|
2317 truth = Image.open(GetDatabasePath('Formats/Multiframe0.png')) |
|
2a29bcff60a7
tests of image decoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
18
diff
changeset
|
2318 self.AssertSameImages(truth.getdata(), '/instances/%s/image-uint8' % mf) |
|
2a29bcff60a7
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Sebastien Jodogne <s.jodogne@gmail.com>
parents:
18
diff
changeset
|
2319 self.AssertSameImages(truth.getdata(), '/instances/%s/image-uint16' % mf) |
|
2a29bcff60a7
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Sebastien Jodogne <s.jodogne@gmail.com>
parents:
18
diff
changeset
|
2320 self.AssertSameImages(truth.getdata(), '/instances/%s/image-int16' % mf) |
|
2a29bcff60a7
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Sebastien Jodogne <s.jodogne@gmail.com>
parents:
18
diff
changeset
|
2321 self.AssertSameImages(truth.getdata(), '/instances/%s/preview' % mf) |
|
2a29bcff60a7
tests of image decoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
18
diff
changeset
|
2322 self.assertEqual('9812b99d93bbcd4e7684ded089b5dfb3', ComputeMD5(DoGet(_REMOTE, '/instances/%s/matlab' % mf))) |
|
2a29bcff60a7
tests of image decoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
18
diff
changeset
|
2323 |
|
2a29bcff60a7
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Sebastien Jodogne <s.jodogne@gmail.com>
parents:
18
diff
changeset
|
2324 self.AssertSameImages(truth.getdata(), '/instances/%s/frames/0/image-uint16' % mf) |
|
2a29bcff60a7
tests of image decoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
18
diff
changeset
|
2325 |
|
2a29bcff60a7
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Sebastien Jodogne <s.jodogne@gmail.com>
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18
diff
changeset
|
2326 # Test the last frame |
|
2a29bcff60a7
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Sebastien Jodogne <s.jodogne@gmail.com>
parents:
18
diff
changeset
|
2327 truth = Image.open(GetDatabasePath('Formats/Multiframe75.png')) |
|
2a29bcff60a7
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Sebastien Jodogne <s.jodogne@gmail.com>
parents:
18
diff
changeset
|
2328 self.AssertSameImages(truth.getdata(), '/instances/%s/frames/75/image-uint16' % mf) |
|
2a29bcff60a7
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Sebastien Jodogne <s.jodogne@gmail.com>
parents:
18
diff
changeset
|
2329 |
|
2a29bcff60a7
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Sebastien Jodogne <s.jodogne@gmail.com>
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18
diff
changeset
|
2330 |
|
2a29bcff60a7
tests of image decoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
18
diff
changeset
|
2331 def test_decode_signed(self): |
|
2a29bcff60a7
tests of image decoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
18
diff
changeset
|
2332 signed = UploadInstance(_REMOTE, 'SignedCT.dcm')['ID'] |
|
2a29bcff60a7
tests of image decoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
18
diff
changeset
|
2333 minValue = -2000 |
|
2a29bcff60a7
tests of image decoding
Sebastien Jodogne <s.jodogne@gmail.com>
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18
diff
changeset
|
2334 maxValue = 4042 |
|
2a29bcff60a7
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Sebastien Jodogne <s.jodogne@gmail.com>
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18
diff
changeset
|
2335 |
|
2a29bcff60a7
tests of image decoding
Sebastien Jodogne <s.jodogne@gmail.com>
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18
diff
changeset
|
2336 truth = Image.open(GetDatabasePath('Formats/SignedCT.png')) |
|
2a29bcff60a7
tests of image decoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
18
diff
changeset
|
2337 self.AssertSameImages(truth.getdata(), '/instances/%s/image-int16' % signed) |
|
2a29bcff60a7
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Sebastien Jodogne <s.jodogne@gmail.com>
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18
diff
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|
2338 |
|
2a29bcff60a7
tests of image decoding
Sebastien Jodogne <s.jodogne@gmail.com>
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18
diff
changeset
|
2339 truth2 = map(lambda x: 0 if x >= 32768 else x, truth.getdata()) |
|
2a29bcff60a7
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Sebastien Jodogne <s.jodogne@gmail.com>
parents:
18
diff
changeset
|
2340 self.AssertSameImages(truth2, '/instances/%s/image-uint16' % signed) |
|
2a29bcff60a7
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Sebastien Jodogne <s.jodogne@gmail.com>
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diff
changeset
|
2341 |
|
2a29bcff60a7
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Sebastien Jodogne <s.jodogne@gmail.com>
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18
diff
changeset
|
2342 truth3 = map(lambda x: 255 if x >= 256 else x, truth2) |
|
2a29bcff60a7
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Sebastien Jodogne <s.jodogne@gmail.com>
parents:
18
diff
changeset
|
2343 self.AssertSameImages(truth3, '/instances/%s/image-uint8' % signed) |
|
2a29bcff60a7
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Sebastien Jodogne <s.jodogne@gmail.com>
parents:
18
diff
changeset
|
2344 |
|
2a29bcff60a7
tests of image decoding
Sebastien Jodogne <s.jodogne@gmail.com>
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18
diff
changeset
|
2345 tmp = map(lambda x: x - 65536 if x >= 32768 else x, truth.getdata()) |
|
2a29bcff60a7
tests of image decoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
18
diff
changeset
|
2346 tmp = map(lambda x: (255.0 * (x - minValue)) / (maxValue - minValue), tmp) |
|
2a29bcff60a7
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Sebastien Jodogne <s.jodogne@gmail.com>
parents:
18
diff
changeset
|
2347 self.AssertSameImages(tmp, '/instances/%s/preview' % signed) |
|
2a29bcff60a7
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Sebastien Jodogne <s.jodogne@gmail.com>
parents:
18
diff
changeset
|
2348 |
|
2a29bcff60a7
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Sebastien Jodogne <s.jodogne@gmail.com>
parents:
18
diff
changeset
|
2349 self.assertEqual('b57e6c872a3da50877c7da689b03a444', ComputeMD5(DoGet(_REMOTE, '/instances/%s/matlab' % signed))) |
| 22 | 2350 |
| 2351 | |
|
46
85b2e36ed392
explicit GoogleCode source
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
45
diff
changeset
|
2352 def test_googlecode_issue_32(self): |
|
92
dbcbffb889da
test_findscu_encoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
89
diff
changeset
|
2353 self.assertRaises(Exception, lambda: DoPut(_REMOTE, '/tools/default-encoding', 'nope')) |
|
dbcbffb889da
test_findscu_encoding
Sebastien Jodogne <s.jodogne@gmail.com>
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diff
changeset
|
2354 self.assertEqual('Windows1251', DoPut(_REMOTE, '/tools/default-encoding', 'Windows1251')) |
|
dbcbffb889da
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Sebastien Jodogne <s.jodogne@gmail.com>
parents:
89
diff
changeset
|
2355 self.assertEqual('Windows1251', DoGet(_REMOTE, '/tools/default-encoding')) |
|
dbcbffb889da
test_findscu_encoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
89
diff
changeset
|
2356 |
| 22 | 2357 f = UploadInstance(_REMOTE, 'Issue32.dcm')['ID'] |
| 2358 tags = DoGet(_REMOTE, '/instances/%s/tags?simplify' % f) | |
| 2359 self.assertEqual(u'Рентгенография', tags['SeriesDescription']) | |
| 2360 self.assertEqual(u'Таз', tags['BodyPartExamined']) | |
| 2361 self.assertEqual(u'Прямая', tags['ViewPosition']) | |
| 2362 | |
|
92
dbcbffb889da
test_findscu_encoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
89
diff
changeset
|
2363 # Replay the same test using Latin1 as default encoding: This must fail |
|
dbcbffb889da
test_findscu_encoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
89
diff
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|
2364 self.assertEqual('Latin1', DoPut(_REMOTE, '/tools/default-encoding', 'Latin1')) |
|
dbcbffb889da
test_findscu_encoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
89
diff
changeset
|
2365 |
|
dbcbffb889da
test_findscu_encoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
89
diff
changeset
|
2366 DoDelete(_REMOTE, '/instances/%s' % f) |
|
dbcbffb889da
test_findscu_encoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
89
diff
changeset
|
2367 f = UploadInstance(_REMOTE, 'Issue32.dcm')['ID'] |
|
dbcbffb889da
test_findscu_encoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
89
diff
changeset
|
2368 tags = DoGet(_REMOTE, '/instances/%s/tags?simplify' % f) |
|
dbcbffb889da
test_findscu_encoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
89
diff
changeset
|
2369 self.assertNotEqual(u'Рентгенография', tags['SeriesDescription']) |
|
dbcbffb889da
test_findscu_encoding
Sebastien Jodogne <s.jodogne@gmail.com>
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89
diff
changeset
|
2370 |
|
dbcbffb889da
test_findscu_encoding
Sebastien Jodogne <s.jodogne@gmail.com>
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89
diff
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|
2371 |
| 22 | 2372 def test_encodings(self): |
| 23 | 2373 # Latin-1 (ISO_IR 100) |
| 22 | 2374 brainix = UploadInstance(_REMOTE, 'Brainix/Epi/IM-0001-0001.dcm')['ID'] |
| 2375 tags = DoGet(_REMOTE, '/instances/%s/tags?simplify' % brainix) | |
| 2376 self.assertEqual(u'IRM cérébrale, neuro-crâne', tags['StudyDescription']) | |
| 23 | 2377 |
| 2378 # Latin-2 (ISO_IR 101) | |
| 2379 a = UploadInstance(_REMOTE, 'MarekLatin2.dcm')['ID'] | |
| 2380 i = DoGet(_REMOTE, '/instances/%s/simplified-tags' % a) | |
| 2381 # dcm2xml MarekLatin2.dcm | iconv -f latin2 -t utf-8 | xmllint --format - | |
| 2382 self.assertEqual('Imię i Nazwisko osoby opisującej', | |
| 2383 i['ContentSequence'][4]['ConceptNameCodeSequence'][0]['CodeMeaning'].encode('utf-8')) | |
| 2384 | |
|
26
040f6ef1394a
test_storescu_custom_aet
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
23
diff
changeset
|
2385 |
|
040f6ef1394a
test_storescu_custom_aet
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
23
diff
changeset
|
2386 def test_storescu_custom_aet(self): |
|
040f6ef1394a
test_storescu_custom_aet
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
23
diff
changeset
|
2387 # This tests a feature introduced in Orthanc 0.9.1: "Custom |
|
040f6ef1394a
test_storescu_custom_aet
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
23
diff
changeset
|
2388 # setting of the local AET during C-Store SCU (both in Lua and |
|
040f6ef1394a
test_storescu_custom_aet
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
23
diff
changeset
|
2389 # in the REST API)." |
|
040f6ef1394a
test_storescu_custom_aet
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
23
diff
changeset
|
2390 # https://groups.google.com/forum/#!msg/orthanc-users/o5qMULformU/wZjW2iSaMcAJ |
|
040f6ef1394a
test_storescu_custom_aet
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
23
diff
changeset
|
2391 |
|
040f6ef1394a
test_storescu_custom_aet
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
23
diff
changeset
|
2392 self.assertEqual(0, len(DoGet(_LOCAL, '/patients'))) |
|
040f6ef1394a
test_storescu_custom_aet
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
23
diff
changeset
|
2393 |
|
040f6ef1394a
test_storescu_custom_aet
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
23
diff
changeset
|
2394 a = UploadInstance(_REMOTE, 'Knee/T1/IM-0001-0001.dcm') |
|
040f6ef1394a
test_storescu_custom_aet
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
23
diff
changeset
|
2395 b = UploadInstance(_REMOTE, 'Knee/T1/IM-0001-0002.dcm') |
|
040f6ef1394a
test_storescu_custom_aet
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
23
diff
changeset
|
2396 c = UploadInstance(_REMOTE, 'Knee/T1/IM-0001-0003.dcm') |
|
040f6ef1394a
test_storescu_custom_aet
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
23
diff
changeset
|
2397 |
|
040f6ef1394a
test_storescu_custom_aet
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
23
diff
changeset
|
2398 j = DoPost(_REMOTE, '/modalities/orthanctest/store', { |
|
040f6ef1394a
test_storescu_custom_aet
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
23
diff
changeset
|
2399 'LocalAet' : 'YOP', |
|
040f6ef1394a
test_storescu_custom_aet
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
23
diff
changeset
|
2400 'Resources' : [ a['ID'], b['ID'] ] |
|
040f6ef1394a
test_storescu_custom_aet
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
23
diff
changeset
|
2401 }) |
|
040f6ef1394a
test_storescu_custom_aet
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
23
diff
changeset
|
2402 |
|
040f6ef1394a
test_storescu_custom_aet
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
23
diff
changeset
|
2403 self.assertEqual(2, len(DoGet(_LOCAL, '/instances'))) |
|
040f6ef1394a
test_storescu_custom_aet
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
23
diff
changeset
|
2404 self.assertEqual('YOP', DoGet(_LOCAL, '/instances/%s/metadata/RemoteAET' % a['ID'])) |
|
040f6ef1394a
test_storescu_custom_aet
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
23
diff
changeset
|
2405 |
|
040f6ef1394a
test_storescu_custom_aet
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
23
diff
changeset
|
2406 DropOrthanc(_LOCAL) |
|
040f6ef1394a
test_storescu_custom_aet
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
23
diff
changeset
|
2407 self.assertEqual(0, len(DoGet(_LOCAL, '/instances'))) |
|
040f6ef1394a
test_storescu_custom_aet
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
23
diff
changeset
|
2408 |
|
040f6ef1394a
test_storescu_custom_aet
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
23
diff
changeset
|
2409 j = DoPost(_REMOTE, '/modalities/orthanctest/store', { |
|
040f6ef1394a
test_storescu_custom_aet
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
23
diff
changeset
|
2410 'Resources' : [ c['ID'] ] |
|
040f6ef1394a
test_storescu_custom_aet
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
23
diff
changeset
|
2411 }) |
|
040f6ef1394a
test_storescu_custom_aet
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
23
diff
changeset
|
2412 |
|
040f6ef1394a
test_storescu_custom_aet
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
23
diff
changeset
|
2413 self.assertEqual(1, len(DoGet(_LOCAL, '/instances'))) |
|
040f6ef1394a
test_storescu_custom_aet
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
23
diff
changeset
|
2414 self.assertEqual('ORTHANC', DoGet(_LOCAL, '/instances/%s/metadata/RemoteAET' % c['ID'])) |
|
040f6ef1394a
test_storescu_custom_aet
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
23
diff
changeset
|
2415 |
|
040f6ef1394a
test_storescu_custom_aet
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
23
diff
changeset
|
2416 DropOrthanc(_REMOTE) |
|
040f6ef1394a
test_storescu_custom_aet
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
23
diff
changeset
|
2417 DropOrthanc(_LOCAL) |
|
040f6ef1394a
test_storescu_custom_aet
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
23
diff
changeset
|
2418 |
| 174 | 2419 InstallLuaScriptFromPath(_REMOTE, 'Lua/AutoroutingChangeAet.lua') |
|
26
040f6ef1394a
test_storescu_custom_aet
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
23
diff
changeset
|
2420 DoPost(_REMOTE, '/tools/execute-script', 'aet = "HELLO"', 'application/lua') |
|
040f6ef1394a
test_storescu_custom_aet
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
23
diff
changeset
|
2421 |
|
040f6ef1394a
test_storescu_custom_aet
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
23
diff
changeset
|
2422 self.assertEqual(0, len(DoGet(_LOCAL, '/instances'))) |
|
040f6ef1394a
test_storescu_custom_aet
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
23
diff
changeset
|
2423 UploadInstance(_REMOTE, 'Knee/T1/IM-0001-0001.dcm') |
|
040f6ef1394a
test_storescu_custom_aet
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
23
diff
changeset
|
2424 WaitEmpty(_REMOTE) |
|
040f6ef1394a
test_storescu_custom_aet
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
23
diff
changeset
|
2425 self.assertEqual(1, len(DoGet(_LOCAL, '/instances'))) |
|
040f6ef1394a
test_storescu_custom_aet
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
23
diff
changeset
|
2426 self.assertEqual('HELLO', DoGet(_LOCAL, '/instances/%s/metadata/RemoteAET' % a['ID'])) |
|
040f6ef1394a
test_storescu_custom_aet
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
23
diff
changeset
|
2427 |
|
040f6ef1394a
test_storescu_custom_aet
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
23
diff
changeset
|
2428 DoPost(_REMOTE, '/tools/execute-script', 'aet = nill', 'application/lua') |
|
040f6ef1394a
test_storescu_custom_aet
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
23
diff
changeset
|
2429 UploadInstance(_REMOTE, 'Knee/T1/IM-0001-0002.dcm') |
|
040f6ef1394a
test_storescu_custom_aet
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
23
diff
changeset
|
2430 WaitEmpty(_REMOTE) |
|
040f6ef1394a
test_storescu_custom_aet
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
23
diff
changeset
|
2431 self.assertEqual(2, len(DoGet(_LOCAL, '/instances'))) |
|
040f6ef1394a
test_storescu_custom_aet
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
23
diff
changeset
|
2432 self.assertEqual('ORTHANC', DoGet(_LOCAL, '/instances/%s/metadata/RemoteAET' % b['ID'])) |
|
34
1047d7bc5210
test limit and since arguments while retrieving DICOM resources in the REST API
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
28
diff
changeset
|
2433 |
|
1047d7bc5210
test limit and since arguments while retrieving DICOM resources in the REST API
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
28
diff
changeset
|
2434 def test_resources_since_limit(self): |
|
1047d7bc5210
test limit and since arguments while retrieving DICOM resources in the REST API
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
28
diff
changeset
|
2435 # Upload 16 instances |
|
1047d7bc5210
test limit and since arguments while retrieving DICOM resources in the REST API
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
28
diff
changeset
|
2436 for i in range(4): |
|
1047d7bc5210
test limit and since arguments while retrieving DICOM resources in the REST API
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
28
diff
changeset
|
2437 UploadInstance(_REMOTE, 'Brainix/Flair/IM-0001-000%d.dcm' % (i + 1)) |
|
1047d7bc5210
test limit and since arguments while retrieving DICOM resources in the REST API
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
28
diff
changeset
|
2438 UploadInstance(_REMOTE, 'Brainix/Epi/IM-0001-000%d.dcm' % (i + 1)) |
|
1047d7bc5210
test limit and since arguments while retrieving DICOM resources in the REST API
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
28
diff
changeset
|
2439 UploadInstance(_REMOTE, 'Knee/T1/IM-0001-000%d.dcm' % (i + 1)) |
|
1047d7bc5210
test limit and since arguments while retrieving DICOM resources in the REST API
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
28
diff
changeset
|
2440 UploadInstance(_REMOTE, 'Knee/T2/IM-0001-000%d.dcm' % (i + 1)) |
|
1047d7bc5210
test limit and since arguments while retrieving DICOM resources in the REST API
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
28
diff
changeset
|
2441 |
|
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test limit and since arguments while retrieving DICOM resources in the REST API
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
changeset
|
2442 self.assertEqual(2, len(DoGet(_REMOTE, '/patients'))) |
|
1047d7bc5210
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Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
changeset
|
2443 self.assertEqual(2, len(DoGet(_REMOTE, '/studies'))) |
|
1047d7bc5210
test limit and since arguments while retrieving DICOM resources in the REST API
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
28
diff
changeset
|
2444 self.assertEqual(4, len(DoGet(_REMOTE, '/series'))) |
|
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Sebastien Jodogne <s.jodogne@gmail.com>
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28
diff
changeset
|
2445 self.assertEqual(16, len(DoGet(_REMOTE, '/instances'))) |
|
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Sebastien Jodogne <s.jodogne@gmail.com>
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diff
changeset
|
2446 |
|
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test limit and since arguments while retrieving DICOM resources in the REST API
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
changeset
|
2447 self.assertRaises(Exception, lambda: DoGet(_REMOTE, '/patients&since=10' % i)) |
|
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test limit and since arguments while retrieving DICOM resources in the REST API
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
changeset
|
2448 self.assertRaises(Exception, lambda: DoGet(_REMOTE, '/patients&limit=10' % i)) |
|
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test limit and since arguments while retrieving DICOM resources in the REST API
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
28
diff
changeset
|
2449 |
|
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test limit and since arguments while retrieving DICOM resources in the REST API
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
28
diff
changeset
|
2450 self.assertEqual(0, len(DoGet(_REMOTE, '/patients?since=0&limit=0'))) |
|
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Sebastien Jodogne <s.jodogne@gmail.com>
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diff
changeset
|
2451 self.assertEqual(2, len(DoGet(_REMOTE, '/patients?since=0&limit=100'))) |
|
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Sebastien Jodogne <s.jodogne@gmail.com>
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diff
changeset
|
2452 self.assertEqual(2, len(DoGet(_REMOTE, '/studies?since=0&limit=100'))) |
|
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28
diff
changeset
|
2453 self.assertEqual(4, len(DoGet(_REMOTE, '/series?since=0&limit=100'))) |
|
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diff
changeset
|
2454 self.assertEqual(16, len(DoGet(_REMOTE, '/instances?since=0&limit=100'))) |
|
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diff
changeset
|
2455 self.assertEqual(1, len(DoGet(_REMOTE, '/patients?since=1&limit=100'))) |
|
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Sebastien Jodogne <s.jodogne@gmail.com>
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diff
changeset
|
2456 self.assertEqual(0, len(DoGet(_REMOTE, '/patients?since=2&limit=100'))) |
|
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Sebastien Jodogne <s.jodogne@gmail.com>
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diff
changeset
|
2457 self.assertEqual(0, len(DoGet(_REMOTE, '/patients?since=3&limit=100'))) |
|
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diff
changeset
|
2458 self.assertEqual(1, len(DoGet(_REMOTE, '/studies?since=1&limit=100'))) |
|
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diff
changeset
|
2459 self.assertEqual(3, len(DoGet(_REMOTE, '/series?since=1&limit=100'))) |
|
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diff
changeset
|
2460 self.assertEqual(2, len(DoGet(_REMOTE, '/series?since=2&limit=100'))) |
|
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diff
changeset
|
2461 self.assertEqual(1, len(DoGet(_REMOTE, '/series?since=3&limit=100'))) |
|
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diff
changeset
|
2462 self.assertEqual(0, len(DoGet(_REMOTE, '/series?since=4&limit=100'))) |
|
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diff
changeset
|
2463 self.assertEqual(0, len(DoGet(_REMOTE, '/series?since=100&limit=100'))) |
|
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test limit and since arguments while retrieving DICOM resources in the REST API
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diff
changeset
|
2464 self.assertEqual(15, len(DoGet(_REMOTE, '/instances?since=1&limit=100'))) |
|
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parents:
28
diff
changeset
|
2465 |
|
1047d7bc5210
test limit and since arguments while retrieving DICOM resources in the REST API
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
28
diff
changeset
|
2466 for limit in [ 1, 2, 3, 7, 16, 17 ]: |
|
1047d7bc5210
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Sebastien Jodogne <s.jodogne@gmail.com>
parents:
28
diff
changeset
|
2467 s = {} |
|
1047d7bc5210
test limit and since arguments while retrieving DICOM resources in the REST API
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
28
diff
changeset
|
2468 since = 0 |
|
1047d7bc5210
test limit and since arguments while retrieving DICOM resources in the REST API
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
28
diff
changeset
|
2469 while True: |
|
1047d7bc5210
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Sebastien Jodogne <s.jodogne@gmail.com>
parents:
28
diff
changeset
|
2470 t = DoGet(_REMOTE, '/instances?since=%d&limit=%d' % (since, limit)) |
|
1047d7bc5210
test limit and since arguments while retrieving DICOM resources in the REST API
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
28
diff
changeset
|
2471 if len(t) == 0: |
|
1047d7bc5210
test limit and since arguments while retrieving DICOM resources in the REST API
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
28
diff
changeset
|
2472 break |
|
1047d7bc5210
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Sebastien Jodogne <s.jodogne@gmail.com>
parents:
28
diff
changeset
|
2473 |
|
1047d7bc5210
test limit and since arguments while retrieving DICOM resources in the REST API
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
28
diff
changeset
|
2474 since += len(t) |
|
1047d7bc5210
test limit and since arguments while retrieving DICOM resources in the REST API
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
28
diff
changeset
|
2475 for i in t: |
|
1047d7bc5210
test limit and since arguments while retrieving DICOM resources in the REST API
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
28
diff
changeset
|
2476 s[i] = None |
|
1047d7bc5210
test limit and since arguments while retrieving DICOM resources in the REST API
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
28
diff
changeset
|
2477 |
|
1047d7bc5210
test limit and since arguments while retrieving DICOM resources in the REST API
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
28
diff
changeset
|
2478 self.assertEqual(16, len(s)) |
|
1047d7bc5210
test limit and since arguments while retrieving DICOM resources in the REST API
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
28
diff
changeset
|
2479 for instance in DoGet(_REMOTE, '/instances'): |
|
1047d7bc5210
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Sebastien Jodogne <s.jodogne@gmail.com>
parents:
28
diff
changeset
|
2480 self.assertTrue(instance in s) |
| 36 | 2481 |
| 2482 | |
| 2483 def test_create_pdf(self): | |
| 2484 # Upload 4 instances | |
| 2485 brainixInstance = UploadInstance(_REMOTE, 'Brainix/Flair/IM-0001-0001.dcm')['ID'] | |
| 2486 UploadInstance(_REMOTE, 'Brainix/Epi/IM-0001-0001.dcm') | |
| 2487 UploadInstance(_REMOTE, 'Knee/T1/IM-0001-0001.dcm') | |
| 2488 UploadInstance(_REMOTE, 'Knee/T2/IM-0001-0001.dcm') | |
| 2489 | |
| 2490 brainixPatient = '16738bc3-e47ed42a-43ce044c-a3414a45-cb069bd0' | |
| 2491 brainixStudy = '27f7126f-4f66fb14-03f4081b-f9341db2-53925988' | |
| 2492 brainixEpi = '2ac1316d-3e432022-62eabff2-c59f5475-9b1ac3f8' | |
| 2493 | |
| 2494 with open(GetDatabasePath('HelloWorld.pdf'), 'rb') as f: | |
| 2495 pdf = f.read() | |
| 2496 | |
| 2497 i = DoPost(_REMOTE, '/tools/create-dicom', | |
| 2498 json.dumps({ | |
| 2499 'Tags' : { | |
| 2500 'PatientName' : 'Jodogne', | |
| 2501 'Modality' : 'CT', | |
| 2502 }, | |
| 2503 'Content' : 'data:application/pdf;base64,' + base64.b64encode(pdf) | |
| 2504 })) | |
| 2505 | |
| 2506 self.assertEqual('Jodogne', DoGet(_REMOTE, '/instances/%s/content/PatientName' % i['ID']).strip()) | |
| 2507 self.assertEqual('OT', DoGet(_REMOTE, '/instances/%s/content/Modality' % i['ID']).strip()) | |
| 2508 | |
| 2509 b = DoGet(_REMOTE, '/instances/%s/content/0042-0011' % i['ID']) | |
| 2510 self.assertEqual(len(b), len(pdf) + 1) | |
| 2511 self.assertEqual(ComputeMD5(b), ComputeMD5(pdf + '\0')) | |
| 2512 | |
| 2513 self.assertRaises(Exception, lambda: DoPost(_REMOTE, '/tools/create-dicom', | |
| 2514 json.dumps({ | |
| 2515 'Parent' : brainixPatient, | |
| 2516 'Tags' : { | |
| 2517 'PatientName' : 'Jodogne', | |
| 2518 } | |
| 2519 }))) | |
| 2520 | |
| 2521 i = DoPost(_REMOTE, '/tools/create-dicom', | |
| 2522 json.dumps({ | |
| 2523 'Parent' : brainixPatient, | |
| 2524 'Tags' : { 'StudyDescription' : 'PDF^Patient' }, | |
| 2525 'Content' : 'data:application/pdf;base64,' + base64.b64encode(pdf) | |
| 2526 })) | |
| 2527 | |
| 2528 self.assertEqual(brainixPatient, DoGet(_REMOTE, '/instances/%s/patient' % i['ID'])['ID']) | |
| 2529 | |
| 2530 i = DoPost(_REMOTE, '/tools/create-dicom', | |
| 2531 json.dumps({ | |
| 2532 'Parent' : brainixStudy, | |
| 2533 'Tags' : { 'SeriesDescription' : 'PDF^Study' }, | |
| 2534 'Content' : 'data:application/pdf;base64,' + base64.b64encode(pdf) | |
| 2535 })) | |
| 2536 | |
| 2537 self.assertEqual(brainixStudy, DoGet(_REMOTE, '/instances/%s/study' % i['ID'])['ID']) | |
| 2538 | |
| 2539 i = DoPost(_REMOTE, '/tools/create-dicom', | |
| 2540 json.dumps({ | |
| 2541 'Parent' : brainixEpi, | |
| 37 | 2542 'Tags' : { 'SpecificCharacterSet' : 'ISO_IR 13' }, |
| 36 | 2543 'Content' : 'data:application/pdf;base64,' + base64.b64encode(pdf) |
| 2544 })) | |
| 2545 | |
| 2546 self.assertEqual(brainixEpi, DoGet(_REMOTE, '/instances/%s/series' % i['ID'])['ID']) | |
| 2547 | |
| 2548 b = DoGet(_REMOTE, '/instances/%s/pdf' % i['ID']) | |
| 2549 self.assertEqual(len(b), len(pdf)) | |
| 2550 self.assertEqual(ComputeMD5(b), ComputeMD5(pdf)) | |
| 2551 | |
| 2552 self.assertRaises(Exception, lambda: DoGet(_REMOTE, '/instances/%s/pdf' % brainixInstance)) | |
| 38 | 2553 |
| 2554 | |
| 2555 def test_create_series(self): | |
| 2556 i = DoPost(_REMOTE, '/tools/create-dicom', | |
| 2557 json.dumps({ | |
| 2558 'Tags' : { | |
| 40 | 2559 'SpecificCharacterSet' : 'ISO_IR 100', |
| 2560 'PatientName' : 'Sébastien Jodogne', | |
| 38 | 2561 'Modality' : 'CT', |
| 2562 }, | |
| 2563 'Content' : [ | |
| 40 | 2564 { |
| 2565 'Content': 'data:image/png;base64,iVBORw0KGgoAAAANSUhEUgAAAAUAAAAFCAYAAACNbyblAAAAHElEQVQI12P4//8/w38GIAXDIBKE0DHxgljNBAAO9TXL0Y4OHwAAAABJRU5ErkJggg==', # red dot in RGBA | |
| 2566 'Tags' : { 'ImageComments' : 'Tutu' } | |
| 2567 }, | |
| 38 | 2568 'data:image/png;base64,iVBORw0KGgoAAAANSUhEUgAAABAAAAAQCAYAAAAf8/9hAAAAoUlEQVQ4jZ2SWw3EIBREjwUsYAELa2EtoAULFUCyXAtroRZqoRbox254BdLC/DZnZjoXWJFgCDg8egW2CBEhEnDzyRk+Ecxz2KP/0AL8S99T+jQccAVs22qKwAuPuq0uyNg9cPLh3am+pe/dkHLZtqJHj6vXJrZ7nvzvxxgemXgUwnGfXqpee09mUwp8m022OYP6bLF7mVuVe0y/umxinsAXRd9z0k1ubWsAAAAASUVORK5CYII=', |
| 2569 ] | |
| 2570 })) | |
| 2571 | |
| 2572 s = DoGet(_REMOTE, i['Path']) | |
| 2573 self.assertEqual('Series', s['Type']) | |
| 2574 self.assertEqual(s['ID'], i['ID']) | |
| 2575 self.assertEqual(2, len(s['Instances'])) | |
| 39 | 2576 self.assertEqual(2, s['ExpectedNumberOfInstances']) |
| 2577 self.assertEqual('Complete', s['Status']) | |
| 40 | 2578 |
| 2579 a = DoGet(_REMOTE, '/instances/%s/tags?simplify' % s['Instances'][0]) | |
| 2580 b = DoGet(_REMOTE, '/instances/%s/tags?simplify' % s['Instances'][1]) | |
| 2581 self.assertTrue('ImageComments' in a or 'ImageComments' in b) | |
| 2582 if 'ImageComments' in a: | |
| 2583 self.assertEqual('Tutu', a['ImageComments']) | |
| 2584 else: | |
| 2585 self.assertEqual('Tutu', b['ImageComments']) | |
| 2586 | |
| 2587 patient = DoGet(_REMOTE, '/instances/%s/patient' % s['Instances'][0]) | |
| 2588 self.assertEqual(patient['MainDicomTags']['PatientName'].encode('utf-8'), | |
| 2589 'Sébastien Jodogne') | |
| 47 | 2590 |
| 2591 | |
| 2592 def test_create_binary(self): | |
| 2593 binary = ''.join(map(chr, range(256))) | |
| 2594 encoded = 'data:application/octet-stream;base64,' + base64.b64encode(binary) | |
| 2595 tags = { | |
| 2596 'PatientName' : 'Jodogne', | |
| 2597 '8899-8899' : encoded | |
| 2598 } | |
| 2599 | |
| 2600 i = DoPost(_REMOTE, '/tools/create-dicom', | |
| 2601 json.dumps({ | |
| 2602 'Tags' : tags | |
| 2603 })) | |
| 2604 | |
| 2605 self.assertEqual('Jodogne', DoGet(_REMOTE, '/instances/%s/content/PatientName' % i['ID']).strip()) | |
| 2606 self.assertEqual(binary, DoGet(_REMOTE, '/instances/%s/content/8899-8899' % i['ID']).strip()) | |
| 2607 | |
| 2608 i = DoPost(_REMOTE, '/tools/create-dicom', | |
| 2609 json.dumps({ | |
| 2610 'InterpretBinaryTags' : False, | |
| 2611 'Tags' : tags | |
| 2612 })) | |
| 2613 | |
| 2614 self.assertEqual('Jodogne', DoGet(_REMOTE, '/instances/%s/content/PatientName' % i['ID']).strip()) | |
| 2615 self.assertEqual(encoded, DoGet(_REMOTE, '/instances/%s/content/8899-8899' % i['ID'])[0:-1]) | |
|
48
e4352463ff74
test_patient_ids_collision
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
47
diff
changeset
|
2616 |
|
e4352463ff74
test_patient_ids_collision
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
47
diff
changeset
|
2617 |
|
e4352463ff74
test_patient_ids_collision
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
47
diff
changeset
|
2618 def test_patient_ids_collision(self): |
|
e4352463ff74
test_patient_ids_collision
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
47
diff
changeset
|
2619 # Upload 3 instances from 3 different studies, but with the |
|
e4352463ff74
test_patient_ids_collision
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
47
diff
changeset
|
2620 # same PatientID |
|
e4352463ff74
test_patient_ids_collision
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
47
diff
changeset
|
2621 for i in range(3): |
|
e4352463ff74
test_patient_ids_collision
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
47
diff
changeset
|
2622 UploadInstance(_REMOTE, 'PatientIdsCollision/Image%d.dcm' % (i + 1)) |
|
e4352463ff74
test_patient_ids_collision
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
47
diff
changeset
|
2623 |
|
e4352463ff74
test_patient_ids_collision
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
47
diff
changeset
|
2624 a = DoPost(_REMOTE, '/tools/find', { 'Level' : 'Patient', |
|
e4352463ff74
test_patient_ids_collision
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
47
diff
changeset
|
2625 'Query' : { 'PatientName' : '*' }}) |
|
e4352463ff74
test_patient_ids_collision
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
47
diff
changeset
|
2626 self.assertEqual(1, len(a)) |
|
e4352463ff74
test_patient_ids_collision
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
47
diff
changeset
|
2627 self.assertEqual('COMMON', DoGet(_REMOTE, '/patients/%s' % a[0]) ['MainDicomTags']['PatientID']) |
|
e4352463ff74
test_patient_ids_collision
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
47
diff
changeset
|
2628 |
|
e4352463ff74
test_patient_ids_collision
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
47
diff
changeset
|
2629 a = DoPost(_REMOTE, '/tools/find', { 'Level' : 'Study', |
|
e4352463ff74
test_patient_ids_collision
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
47
diff
changeset
|
2630 'CaseSensitive' : True, |
|
e4352463ff74
test_patient_ids_collision
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
47
diff
changeset
|
2631 'Query' : { 'PatientName' : 'FOO\\HELLO' }}) |
|
e4352463ff74
test_patient_ids_collision
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
47
diff
changeset
|
2632 self.assertEqual(2, len(a)) |
|
e4352463ff74
test_patient_ids_collision
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
47
diff
changeset
|
2633 |
|
e4352463ff74
test_patient_ids_collision
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
47
diff
changeset
|
2634 a = DoPost(_REMOTE, '/tools/find', { 'Level' : 'Series', |
|
e4352463ff74
test_patient_ids_collision
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
47
diff
changeset
|
2635 'CaseSensitive' : False, |
|
e4352463ff74
test_patient_ids_collision
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
47
diff
changeset
|
2636 'Query' : { 'PatientName' : 'Foo' }}) |
|
e4352463ff74
test_patient_ids_collision
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
47
diff
changeset
|
2637 self.assertEqual(1, len(a)) |
|
e4352463ff74
test_patient_ids_collision
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
47
diff
changeset
|
2638 self.assertEqual('FOO^SERIES', DoGet(_REMOTE, '/series/%s/study' % a[0]) ['MainDicomTags']['StudyDescription']) |
|
e4352463ff74
test_patient_ids_collision
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
47
diff
changeset
|
2639 self.assertEqual('FOO', DoGet(_REMOTE, '/series/%s/study' % a[0]) ['PatientMainDicomTags']['PatientName']) |
|
e4352463ff74
test_patient_ids_collision
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
47
diff
changeset
|
2640 self.assertEqual('COMMON', DoGet(_REMOTE, '/series/%s/study' % a[0]) ['PatientMainDicomTags']['PatientID']) |
|
e4352463ff74
test_patient_ids_collision
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
47
diff
changeset
|
2641 |
|
e4352463ff74
test_patient_ids_collision
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
47
diff
changeset
|
2642 a = DoPost(_REMOTE, '/tools/find', { 'Level' : 'Study', |
|
e4352463ff74
test_patient_ids_collision
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
47
diff
changeset
|
2643 'Query' : { 'PatientName' : '*' }}) |
|
e4352463ff74
test_patient_ids_collision
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
47
diff
changeset
|
2644 self.assertEqual(3, len(a)) |
|
e4352463ff74
test_patient_ids_collision
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
47
diff
changeset
|
2645 d = map(lambda x: DoGet(_REMOTE, '/studies/%s' % x) ['MainDicomTags']['StudyDescription'], a) |
|
e4352463ff74
test_patient_ids_collision
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
47
diff
changeset
|
2646 self.assertTrue('FOO^SERIES' in d) |
|
e4352463ff74
test_patient_ids_collision
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
47
diff
changeset
|
2647 self.assertTrue('HELLO^SERIES' in d) |
|
e4352463ff74
test_patient_ids_collision
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
47
diff
changeset
|
2648 self.assertTrue('WORLD^SERIES' in d) |
|
e4352463ff74
test_patient_ids_collision
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
47
diff
changeset
|
2649 |
|
e4352463ff74
test_patient_ids_collision
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
47
diff
changeset
|
2650 d = map(lambda x: DoGet(_REMOTE, '/studies/%s' % x) ['PatientMainDicomTags']['PatientID'], a) |
|
e4352463ff74
test_patient_ids_collision
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
47
diff
changeset
|
2651 self.assertEqual(1, len(set(d))) |
|
e4352463ff74
test_patient_ids_collision
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
47
diff
changeset
|
2652 self.assertEqual('COMMON', d[0]) |
|
e4352463ff74
test_patient_ids_collision
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
47
diff
changeset
|
2653 |
|
e4352463ff74
test_patient_ids_collision
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
47
diff
changeset
|
2654 for i in a: |
|
e4352463ff74
test_patient_ids_collision
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
47
diff
changeset
|
2655 d = DoGet(_REMOTE, '/studies/%s' % i) ['MainDicomTags']['StudyDescription'] |
|
e4352463ff74
test_patient_ids_collision
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
47
diff
changeset
|
2656 p = DoGet(_REMOTE, '/studies/%s' % i) ['PatientMainDicomTags']['PatientName'] |
|
e4352463ff74
test_patient_ids_collision
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
47
diff
changeset
|
2657 self.assertEqual('%s^SERIES' % p, d) |
|
49
e7f9b8199545
test_bitbucket_issue_4
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
48
diff
changeset
|
2658 |
|
e7f9b8199545
test_bitbucket_issue_4
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
48
diff
changeset
|
2659 |
|
e7f9b8199545
test_bitbucket_issue_4
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
48
diff
changeset
|
2660 def test_bitbucket_issue_4(self): |
|
e7f9b8199545
test_bitbucket_issue_4
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
48
diff
changeset
|
2661 UploadInstance(_REMOTE, 'Brainix/Epi/IM-0001-0001.dcm') |
|
e7f9b8199545
test_bitbucket_issue_4
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
48
diff
changeset
|
2662 UploadInstance(_REMOTE, 'Brainix/Epi/IM-0001-0002.dcm') |
|
e7f9b8199545
test_bitbucket_issue_4
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
48
diff
changeset
|
2663 UploadInstance(_REMOTE, 'Brainix/Epi/IM-0001-0003.dcm') |
|
e7f9b8199545
test_bitbucket_issue_4
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
48
diff
changeset
|
2664 UploadInstance(_REMOTE, 'Formats/Jpeg.dcm') |
|
e7f9b8199545
test_bitbucket_issue_4
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
48
diff
changeset
|
2665 UploadInstance(_REMOTE, 'Formats/JpegLossless.dcm') |
|
e7f9b8199545
test_bitbucket_issue_4
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
48
diff
changeset
|
2666 UploadInstance(_REMOTE, 'Formats/Rle.dcm') |
|
e7f9b8199545
test_bitbucket_issue_4
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
48
diff
changeset
|
2667 |
|
e7f9b8199545
test_bitbucket_issue_4
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
48
diff
changeset
|
2668 self.assertEqual(0, len(DoGet(_LOCAL, '/instances'))) |
|
e7f9b8199545
test_bitbucket_issue_4
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
48
diff
changeset
|
2669 self.assertEqual(6, len(DoGet(_REMOTE, '/instances'))) |
|
e7f9b8199545
test_bitbucket_issue_4
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
48
diff
changeset
|
2670 |
|
e7f9b8199545
test_bitbucket_issue_4
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
48
diff
changeset
|
2671 p = DoGet(_REMOTE, '/patients') |
|
e7f9b8199545
test_bitbucket_issue_4
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
48
diff
changeset
|
2672 self.assertEqual(2, len(p)) |
|
e7f9b8199545
test_bitbucket_issue_4
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
48
diff
changeset
|
2673 i1 = map(lambda x: x['ID'], DoGet(_REMOTE, '/patients/%s/instances' % p[0])) |
|
e7f9b8199545
test_bitbucket_issue_4
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
48
diff
changeset
|
2674 i2 = map(lambda x: x['ID'], DoGet(_REMOTE, '/patients/%s/instances' % p[1])) |
|
e7f9b8199545
test_bitbucket_issue_4
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
48
diff
changeset
|
2675 self.assertEqual(3, len(i1)) |
|
e7f9b8199545
test_bitbucket_issue_4
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
48
diff
changeset
|
2676 self.assertEqual(3, len(i2)) |
|
e7f9b8199545
test_bitbucket_issue_4
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
48
diff
changeset
|
2677 |
|
e7f9b8199545
test_bitbucket_issue_4
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
48
diff
changeset
|
2678 j = DoPost(_REMOTE, '/modalities/orthanctest/store', i2[0:1] + i1 + i2[1:3]) |
|
e7f9b8199545
test_bitbucket_issue_4
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
48
diff
changeset
|
2679 |
|
e7f9b8199545
test_bitbucket_issue_4
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
48
diff
changeset
|
2680 self.assertEqual(6, len(DoGet(_LOCAL, '/instances'))) |
|
50
8de63d56cf11
test_create_sequence
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
49
diff
changeset
|
2681 |
|
8de63d56cf11
test_create_sequence
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
49
diff
changeset
|
2682 |
|
8de63d56cf11
test_create_sequence
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
49
diff
changeset
|
2683 def test_create_sequence(self): |
|
8de63d56cf11
test_create_sequence
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
49
diff
changeset
|
2684 i = DoPost(_REMOTE, '/tools/create-dicom', |
|
8de63d56cf11
test_create_sequence
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
49
diff
changeset
|
2685 json.dumps({ |
|
8de63d56cf11
test_create_sequence
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
49
diff
changeset
|
2686 'Tags' : { |
|
8de63d56cf11
test_create_sequence
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
49
diff
changeset
|
2687 'SpecificCharacterSet': 'ISO_IR 100', # Encode using Latin1 |
|
8de63d56cf11
test_create_sequence
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
49
diff
changeset
|
2688 'PatientName': 'Jodogne^', |
|
51
264a20a0276d
test_modify_sequence
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
50
diff
changeset
|
2689 'ReferencedStudySequence': GenerateTestSequence(), |
|
50
8de63d56cf11
test_create_sequence
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
49
diff
changeset
|
2690 } |
|
8de63d56cf11
test_create_sequence
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
49
diff
changeset
|
2691 }))['ID'] |
|
8de63d56cf11
test_create_sequence
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
49
diff
changeset
|
2692 |
|
8de63d56cf11
test_create_sequence
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
49
diff
changeset
|
2693 self.assertEqual('Jodogne^', DoGet(_REMOTE, '/instances/%s/content/PatientName' % i)) |
|
8de63d56cf11
test_create_sequence
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
49
diff
changeset
|
2694 self.assertEqual('Hello^', DoGet(_REMOTE, '/instances/%s/content/ReferencedStudySequence/0/StudyDescription' % i)) |
|
8de63d56cf11
test_create_sequence
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
49
diff
changeset
|
2695 self.assertEqual('Toto', DoGet(_REMOTE, '/instances/%s/content/ReferencedStudySequence/0/ReferencedStudySequence/0/StudyDescription' % i)) |
|
8de63d56cf11
test_create_sequence
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
49
diff
changeset
|
2696 self.assertEqual('Tata', DoGet(_REMOTE, '/instances/%s/content/ReferencedStudySequence/0/ReferencedStudySequence/1/StudyDescription' % i)) |
|
8de63d56cf11
test_create_sequence
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
49
diff
changeset
|
2697 self.assertEqual(u'Sébastien^'.encode('latin-1'), |
|
8de63d56cf11
test_create_sequence
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
49
diff
changeset
|
2698 DoGet(_REMOTE, '/instances/%s/content/ReferencedStudySequence/1/StudyDescription' % i)) |
|
51
264a20a0276d
test_modify_sequence
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
50
diff
changeset
|
2699 |
|
264a20a0276d
test_modify_sequence
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
50
diff
changeset
|
2700 |
|
264a20a0276d
test_modify_sequence
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
50
diff
changeset
|
2701 def test_modify_sequence(self): |
|
264a20a0276d
test_modify_sequence
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
50
diff
changeset
|
2702 i = UploadInstance(_REMOTE, 'PrivateTags.dcm')['ID'] |
|
264a20a0276d
test_modify_sequence
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
50
diff
changeset
|
2703 self.assertRaises(Exception, lambda: DoGet(_REMOTE, '/instances/%s/content/ReferencedStudySequence' % i)) |
|
264a20a0276d
test_modify_sequence
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
50
diff
changeset
|
2704 |
|
264a20a0276d
test_modify_sequence
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
50
diff
changeset
|
2705 j = DoPost(_REMOTE, '/instances/%s/modify' % i, |
|
264a20a0276d
test_modify_sequence
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
50
diff
changeset
|
2706 json.dumps({ |
|
264a20a0276d
test_modify_sequence
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
50
diff
changeset
|
2707 "Replace" : { |
|
264a20a0276d
test_modify_sequence
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
50
diff
changeset
|
2708 "PatientName" : "hello", |
|
264a20a0276d
test_modify_sequence
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
50
diff
changeset
|
2709 'ReferencedStudySequence': GenerateTestSequence(), |
|
264a20a0276d
test_modify_sequence
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
50
diff
changeset
|
2710 }, |
|
264a20a0276d
test_modify_sequence
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
50
diff
changeset
|
2711 }), |
|
264a20a0276d
test_modify_sequence
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
50
diff
changeset
|
2712 'application/json') |
|
264a20a0276d
test_modify_sequence
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
50
diff
changeset
|
2713 j = DoPost(_REMOTE, '/instances', j, 'application/dicom')['ID'] |
|
264a20a0276d
test_modify_sequence
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
50
diff
changeset
|
2714 DoDelete(_REMOTE, '/instances/%s' % i) |
|
264a20a0276d
test_modify_sequence
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
50
diff
changeset
|
2715 |
| 52 | 2716 self.assertEqual(2, len(DoGet(_REMOTE, '/instances/%s/content/ReferencedStudySequence' % j))) |
| 2717 | |
| 2718 | |
| 2719 def test_compression(self): | |
| 2720 i = UploadInstance(_REMOTE, 'DummyCT.dcm')['ID'] | |
| 2721 | |
| 2722 data = DoGetRaw(_REMOTE, '/instances/%s/attachments/dicom-as-json/data' % i)[1] | |
| 2723 | |
| 2724 # "StorageCompression" is enabled in the Orthanc to be tested, | |
| 2725 # uncompress the data before running the test | |
| 2726 if DoGet(_REMOTE, '/instances/%s/attachments/dicom-as-json/is-compressed' % i) != 0: | |
| 2727 DoPost(_REMOTE, '/instances/%s/attachments/dicom-as-json/uncompress' % i) | |
| 2728 | |
| 2729 cs = DoGet(_REMOTE, '/statistics')['TotalDiskSize'] | |
| 2730 us = DoGet(_REMOTE, '/statistics')['TotalUncompressedSize'] | |
| 2731 size = DoGet(_REMOTE, '/instances/%s/attachments/dicom-as-json/size' % i) | |
| 2732 md5 = DoGet(_REMOTE, '/instances/%s/attachments/dicom-as-json/md5' % i) | |
| 2733 self.assertEqual(data, DoGetRaw(_REMOTE, '/instances/%s/attachments/dicom-as-json/compressed-data' % i)[1]) | |
| 2734 self.assertEqual(md5, DoGet(_REMOTE, '/instances/%s/attachments/dicom-as-json/compressed-md5' % i)) | |
| 2735 self.assertEqual(size, DoGet(_REMOTE, '/instances/%s/attachments/dicom-as-json/compressed-size' % i)) | |
| 2736 | |
| 2737 ops = DoGet(_REMOTE, '/instances/%s/attachments/dicom-as-json' % i) | |
| 2738 self.assertTrue('compress' in ops) | |
| 2739 self.assertTrue('uncompress' in ops) | |
| 2740 self.assertTrue('is-compressed' in ops) | |
| 2741 self.assertEqual(0, DoGet(_REMOTE, '/instances/%s/attachments/dicom-as-json/is-compressed' % i)) | |
| 2742 DoPost(_REMOTE, '/instances/%s/attachments/dicom-as-json/verify-md5' % i) | |
| 2743 | |
| 2744 DoPost(_REMOTE, '/instances/%s/attachments/dicom-as-json/compress' % i) | |
| 2745 DoPost(_REMOTE, '/instances/%s/attachments/dicom-as-json/verify-md5' % i) | |
| 2746 self.assertEqual(1, DoGet(_REMOTE, '/instances/%s/attachments/dicom-as-json/is-compressed' % i)) | |
| 2747 self.assertLess(cs, DoGet(_REMOTE, '/statistics')['TotalDiskSize']) | |
| 2748 self.assertEqual(us, DoGet(_REMOTE, '/statistics')['TotalUncompressedSize']) | |
| 2749 self.assertGreater(len(data), len(DoGetRaw(_REMOTE, '/instances/%s/attachments/dicom-as-json/compressed-data' % i)[1])) | |
| 2750 self.assertGreater(size, DoGet(_REMOTE, '/instances/%s/attachments/dicom-as-json/compressed-size' % i)) | |
| 2751 self.assertEqual(size, DoGet(_REMOTE, '/instances/%s/attachments/dicom-as-json/size' % i)) | |
| 2752 self.assertEqual(md5, DoGet(_REMOTE, '/instances/%s/attachments/dicom-as-json/md5' % i)) | |
| 2753 self.assertNotEqual(md5, DoGet(_REMOTE, '/instances/%s/attachments/dicom-as-json/compressed-md5' % i)) | |
| 2754 | |
| 2755 DoPost(_REMOTE, '/instances/%s/attachments/dicom-as-json/uncompress' % i) | |
| 2756 DoPost(_REMOTE, '/instances/%s/attachments/dicom-as-json/verify-md5' % i) | |
| 2757 self.assertEqual(0, DoGet(_REMOTE, '/instances/%s/attachments/dicom-as-json/is-compressed' % i)) | |
| 2758 self.assertEqual(data, DoGetRaw(_REMOTE, '/instances/%s/attachments/dicom-as-json/compressed-data' % i)[1]) | |
| 2759 self.assertEqual(size, DoGet(_REMOTE, '/instances/%s/attachments/dicom-as-json/compressed-size' % i)) | |
| 2760 self.assertEqual(size, DoGet(_REMOTE, '/instances/%s/attachments/dicom-as-json/size' % i)) | |
| 2761 self.assertEqual(md5, DoGet(_REMOTE, '/instances/%s/attachments/dicom-as-json/md5' % i)) | |
| 2762 self.assertEqual(md5, DoGet(_REMOTE, '/instances/%s/attachments/dicom-as-json/compressed-md5' % i)) | |
| 2763 self.assertEqual(cs, DoGet(_REMOTE, '/statistics')['TotalDiskSize']) | |
| 2764 self.assertEqual(us, DoGet(_REMOTE, '/statistics')['TotalUncompressedSize']) | |
| 53 | 2765 |
| 2766 | |
| 2767 def test_ordered_slices(self): | |
| 2768 i = UploadInstance(_REMOTE, 'Multiframe.dcm')['ID'] | |
| 2769 s = DoGet(_REMOTE, '/instances/%s' % i)['ParentSeries'] | |
| 2770 o = DoGet(_REMOTE, '/series/%s/ordered-slices' % s) | |
| 2771 self.assertEqual('Sequence', o['Type']) | |
| 2772 self.assertEqual(1, len(o['Dicom'])) | |
| 2773 self.assertEqual('/instances/9e05eb0a-18b6268c-e0d36085-8ddab517-3b5aec02/file', o['Dicom'][0]) | |
| 2774 self.assertEqual(76, len(o['Slices'])) | |
| 2775 for j in range(76): | |
| 2776 self.assertEqual('/instances/9e05eb0a-18b6268c-e0d36085-8ddab517-3b5aec02/frames/%d' % j, o['Slices'][j]) | |
| 2777 | |
| 68 | 2778 self.assertEqual(1, len(o['SlicesShort'])) |
| 2779 self.assertEqual('9e05eb0a-18b6268c-e0d36085-8ddab517-3b5aec02', o['SlicesShort'][0][0]) | |
| 2780 self.assertEqual(0, o['SlicesShort'][0][1]) | |
| 2781 self.assertEqual(76, o['SlicesShort'][0][2]) | |
| 2782 | |
| 53 | 2783 i = UploadInstance(_REMOTE, 'Brainix/Epi/IM-0001-0001.dcm')['ID'] |
| 2784 j = UploadInstance(_REMOTE, 'Brainix/Epi/IM-0001-0002.dcm')['ID'] | |
| 2785 k = UploadInstance(_REMOTE, 'Brainix/Epi/IM-0001-0003.dcm')['ID'] | |
| 2786 s = DoGet(_REMOTE, '/instances/%s' % i)['ParentSeries'] | |
| 2787 o = DoGet(_REMOTE, '/series/%s/ordered-slices' % s) | |
| 2788 | |
| 2789 self.assertEqual('Volume', o['Type']) | |
| 2790 self.assertEqual(3, len(o['Dicom'])) | |
| 2791 self.assertEqual(3, len(o['Slices'])) | |
| 2792 self.assertEqual('/instances/%s/file' % i, o['Dicom'][2]) | |
| 2793 self.assertEqual('/instances/%s/file' % j, o['Dicom'][1]) | |
| 2794 self.assertEqual('/instances/%s/file' % k, o['Dicom'][0]) | |
| 2795 self.assertEqual('/instances/%s/frames/0' % i, o['Slices'][2]) | |
| 2796 self.assertEqual('/instances/%s/frames/0' % j, o['Slices'][1]) | |
| 2797 self.assertEqual('/instances/%s/frames/0' % k, o['Slices'][0]) | |
| 2798 | |
| 68 | 2799 self.assertEqual(3, len(o['SlicesShort'])) |
| 2800 self.assertEqual(k, o['SlicesShort'][0][0]) | |
| 2801 self.assertEqual(0, o['SlicesShort'][0][1]) | |
| 2802 self.assertEqual(1, o['SlicesShort'][0][2]) | |
| 2803 self.assertEqual(j, o['SlicesShort'][1][0]) | |
| 2804 self.assertEqual(0, o['SlicesShort'][1][1]) | |
| 2805 self.assertEqual(1, o['SlicesShort'][1][2]) | |
| 2806 self.assertEqual(i, o['SlicesShort'][2][0]) | |
| 2807 self.assertEqual(0, o['SlicesShort'][2][1]) | |
| 2808 self.assertEqual(1, o['SlicesShort'][2][2]) | |
| 2809 | |
| 53 | 2810 i = UploadInstance(_REMOTE, 'Beaufix/IM-0001-0001.dcm')['ID'] |
| 2811 j = UploadInstance(_REMOTE, 'Beaufix/IM-0001-0002.dcm')['ID'] | |
| 2812 s = DoGet(_REMOTE, '/instances/%s' % i)['ParentSeries'] | |
| 2813 o = DoGet(_REMOTE, '/series/%s/ordered-slices' % s) | |
| 2814 | |
| 2815 self.assertEqual('Sequence', o['Type']) | |
| 2816 self.assertEqual(2, len(o['Dicom'])) | |
| 2817 self.assertEqual(2, len(o['Slices'])) | |
| 2818 self.assertEqual('/instances/%s/file' % i, o['Dicom'][0]) | |
| 2819 self.assertEqual('/instances/%s/file' % j, o['Dicom'][1]) | |
| 2820 self.assertEqual('/instances/%s/frames/0' % i, o['Slices'][0]) | |
| 2821 self.assertEqual('/instances/%s/frames/0' % j, o['Slices'][1]) | |
|
54
c5f8a6b0d85e
test_incoming_movescu_accession
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
53
diff
changeset
|
2822 |
| 68 | 2823 self.assertEqual(2, len(o['SlicesShort'])) |
| 2824 self.assertEqual(i, o['SlicesShort'][0][0]) | |
| 2825 self.assertEqual(0, o['SlicesShort'][0][1]) | |
| 2826 self.assertEqual(1, o['SlicesShort'][0][2]) | |
| 2827 self.assertEqual(j, o['SlicesShort'][1][0]) | |
| 2828 self.assertEqual(0, o['SlicesShort'][1][1]) | |
| 2829 self.assertEqual(1, o['SlicesShort'][1][2]) | |
| 2830 | |
| 2831 | |
|
54
c5f8a6b0d85e
test_incoming_movescu_accession
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
53
diff
changeset
|
2832 |
|
c5f8a6b0d85e
test_incoming_movescu_accession
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
53
diff
changeset
|
2833 def test_incoming_movescu_accession(self): |
|
c5f8a6b0d85e
test_incoming_movescu_accession
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
53
diff
changeset
|
2834 UploadInstance(_REMOTE, 'Knee/T1/IM-0001-0001.dcm') |
|
c5f8a6b0d85e
test_incoming_movescu_accession
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
53
diff
changeset
|
2835 |
|
137
412d5f70447e
testing asynchronous c-move
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
136
diff
changeset
|
2836 # No matching patient, so no job is created |
|
54
c5f8a6b0d85e
test_incoming_movescu_accession
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
53
diff
changeset
|
2837 self.assertEqual(0, len(DoGet(_LOCAL, '/patients'))) |
|
c5f8a6b0d85e
test_incoming_movescu_accession
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
53
diff
changeset
|
2838 CallMoveScu([ '--study', '-k', '0008,0052=STUDY', '-k', 'AccessionNumber=nope' ]) |
|
c5f8a6b0d85e
test_incoming_movescu_accession
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
53
diff
changeset
|
2839 self.assertEqual(0, len(DoGet(_LOCAL, '/patients'))) |
|
c5f8a6b0d85e
test_incoming_movescu_accession
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
53
diff
changeset
|
2840 CallMoveScu([ '--study', '-k', '0008,0052=PATIENT', '-k', 'AccessionNumber=A10003245599' ]) |
|
c5f8a6b0d85e
test_incoming_movescu_accession
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
53
diff
changeset
|
2841 self.assertEqual(0, len(DoGet(_LOCAL, '/patients'))) |
|
137
412d5f70447e
testing asynchronous c-move
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
136
diff
changeset
|
2842 |
|
412d5f70447e
testing asynchronous c-move
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
136
diff
changeset
|
2843 # 1 Matching patient, track the job |
| 138 | 2844 self.assertTrue(MonitorJob(_REMOTE, lambda: CallMoveScu([ |
| 2845 '--study', | |
| 2846 '-k', '0008,0052=STUDY', | |
| 2847 '-k', 'AccessionNumber=A10003245599' | |
| 2848 ]))) | |
|
137
412d5f70447e
testing asynchronous c-move
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
136
diff
changeset
|
2849 |
|
54
c5f8a6b0d85e
test_incoming_movescu_accession
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
53
diff
changeset
|
2850 self.assertEqual(1, len(DoGet(_LOCAL, '/patients'))) |
|
c5f8a6b0d85e
test_incoming_movescu_accession
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
53
diff
changeset
|
2851 |
| 55 | 2852 |
| 2853 def test_dicom_to_json(self): | |
| 2854 i = UploadInstance(_REMOTE, 'PrivateMDNTags.dcm')['ID'] | |
|
60
cd3c7f70f139
test backward compatibility with Orthanc 0.9.4
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
59
diff
changeset
|
2855 j = UploadInstance(_REMOTE, 'PrivateTags.dcm')['ID'] |
|
cd3c7f70f139
test backward compatibility with Orthanc 0.9.4
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
59
diff
changeset
|
2856 |
|
cd3c7f70f139
test backward compatibility with Orthanc 0.9.4
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
59
diff
changeset
|
2857 t = DoGet(_REMOTE, '/instances/%s/tags?simplify' % i) |
|
cd3c7f70f139
test backward compatibility with Orthanc 0.9.4
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
59
diff
changeset
|
2858 with open(GetDatabasePath('PrivateMDNTagsSimplify.json'), 'r') as f: |
|
80
8466dbfcb22b
fix test against dcmtk 3.6.1
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
79
diff
changeset
|
2859 self.assertTrue(CompareTags(t, json.loads(f.read()), [ |
| 123 | 2860 # Tags for compatibility with DCMTK 3.6.0 |
| 2861 'RETIRED_OtherPatientIDs', | |
| 2862 'OtherPatientIDs', | |
| 2863 'ACR_NEMA_2C_VariablePixelDataGroupLength', | |
|
80
8466dbfcb22b
fix test against dcmtk 3.6.1
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
79
diff
changeset
|
2864 ])) |
| 55 | 2865 |
| 2866 t = DoGet(_REMOTE, '/instances/%s/tags' % i) | |
| 2867 with open(GetDatabasePath('PrivateMDNTagsFull.json'), 'r') as f: | |
|
87
4b24faec842b
test_reconstruct_json2 + test_private_tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
86
diff
changeset
|
2868 self.assertTrue(CompareTags(t, json.loads(f.read()), [ |
|
4b24faec842b
test_reconstruct_json2 + test_private_tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
86
diff
changeset
|
2869 ])) |
| 55 | 2870 |
|
60
cd3c7f70f139
test backward compatibility with Orthanc 0.9.4
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
59
diff
changeset
|
2871 t = DoGet(_REMOTE, '/instances/%s/tags?simplify' % j) |
|
cd3c7f70f139
test backward compatibility with Orthanc 0.9.4
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
59
diff
changeset
|
2872 with open(GetDatabasePath('PrivateTagsSimplify.json'), 'r') as f: |
|
80
8466dbfcb22b
fix test against dcmtk 3.6.1
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
79
diff
changeset
|
2873 self.assertTrue(CompareTags(t, json.loads(f.read()), [ |
|
8466dbfcb22b
fix test against dcmtk 3.6.1
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
79
diff
changeset
|
2874 ])) |
|
60
cd3c7f70f139
test backward compatibility with Orthanc 0.9.4
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
59
diff
changeset
|
2875 |
|
cd3c7f70f139
test backward compatibility with Orthanc 0.9.4
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
59
diff
changeset
|
2876 t = DoGet(_REMOTE, '/instances/%s/tags' % j) |
|
cd3c7f70f139
test backward compatibility with Orthanc 0.9.4
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
59
diff
changeset
|
2877 with open(GetDatabasePath('PrivateTagsFull.json'), 'r') as f: |
|
cd3c7f70f139
test backward compatibility with Orthanc 0.9.4
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
59
diff
changeset
|
2878 a = json.loads(f.read()) |
|
65
09fc27e0899a
patch for testing windows builds
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
64
diff
changeset
|
2879 aa = json.dumps(a).replace('2e+022', '2e+22') |
|
09fc27e0899a
patch for testing windows builds
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
64
diff
changeset
|
2880 tt = json.dumps(t).replace('2e+022', '2e+22') |
|
09fc27e0899a
patch for testing windows builds
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
64
diff
changeset
|
2881 self.assertEqual(aa, tt) |
| 57 | 2882 |
| 2883 | |
| 2884 def test_batch_archive(self): | |
| 2885 UploadInstance(_REMOTE, 'Knee/T1/IM-0001-0001.dcm') | |
| 2886 UploadInstance(_REMOTE, 'Knee/T1/IM-0001-0002.dcm') | |
| 2887 UploadInstance(_REMOTE, 'Knee/T2/IM-0001-0001.dcm') | |
| 2888 UploadInstance(_REMOTE, 'Knee/T2/IM-0001-0002.dcm') | |
| 2889 UploadInstance(_REMOTE, 'Brainix/Epi/IM-0001-0001.dcm') | |
| 2890 UploadInstance(_REMOTE, 'Brainix/Epi/IM-0001-0002.dcm') | |
| 2891 UploadInstance(_REMOTE, 'Brainix/Flair/IM-0001-0001.dcm') | |
| 2892 UploadInstance(_REMOTE, 'Brainix/Flair/IM-0001-0002.dcm') | |
| 2893 | |
| 2894 s = DoPost(_REMOTE, '/tools/create-archive', [ ]) | |
| 2895 z = zipfile.ZipFile(StringIO(s), "r") | |
| 2896 self.assertEqual(0, len(z.namelist())) | |
| 2897 | |
| 2898 # One patient | |
| 2899 s = DoPost(_REMOTE, '/tools/create-archive', [ 'ca29faea-b6a0e17f-067743a1-8b778011-a48b2a17' ]) | |
| 2900 z = zipfile.ZipFile(StringIO(s), "r") | |
| 2901 self.assertEqual(4, len(z.namelist())) | |
| 2902 | |
| 2903 # One patient + twice its study + one series from other patient | |
| 2904 s = DoPost(_REMOTE, '/tools/create-archive', [ | |
| 2905 'ca29faea-b6a0e17f-067743a1-8b778011-a48b2a17', | |
| 2906 '0a9b3153-2512774b-2d9580de-1fc3dcf6-3bd83918', | |
| 2907 '1e2c125c-411b8e86-3f4fe68e-a7584dd3-c6da78f0' | |
| 2908 ]) | |
| 2909 z = zipfile.ZipFile(StringIO(s), "r") | |
| 2910 self.assertEqual(6, len(z.namelist())) | |
| 2911 | |
| 2912 # One patient + one series + one instance | |
| 2913 s = DoPost(_REMOTE, '/tools/create-archive', [ | |
| 2914 'ca29faea-b6a0e17f-067743a1-8b778011-a48b2a17', | |
| 2915 '1e2c125c-411b8e86-3f4fe68e-a7584dd3-c6da78f0', | |
| 2916 '1d429ccb-bdcc78a1-7d129d6a-ba4966ed-fe4dbd87' | |
| 2917 ]) | |
| 2918 z = zipfile.ZipFile(StringIO(s), "r") | |
| 2919 self.assertEqual(7, len(z.namelist())) | |
|
59
84378ada15ab
test_decode_brainix_as_jpeg
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
58
diff
changeset
|
2920 |
|
84378ada15ab
test_decode_brainix_as_jpeg
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
58
diff
changeset
|
2921 |
|
84378ada15ab
test_decode_brainix_as_jpeg
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
58
diff
changeset
|
2922 def test_decode_brainix_as_jpeg(self): |
|
84378ada15ab
test_decode_brainix_as_jpeg
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
58
diff
changeset
|
2923 i = UploadInstance(_REMOTE, 'Brainix/Epi/IM-0001-0001.dcm')['ID'] |
|
84378ada15ab
test_decode_brainix_as_jpeg
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
58
diff
changeset
|
2924 |
|
84378ada15ab
test_decode_brainix_as_jpeg
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
58
diff
changeset
|
2925 j = GetImage(_REMOTE, '/instances/%s/preview' % i) |
|
84378ada15ab
test_decode_brainix_as_jpeg
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
58
diff
changeset
|
2926 self.assertEqual('PNG', j.format) |
|
84378ada15ab
test_decode_brainix_as_jpeg
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
58
diff
changeset
|
2927 self.assertEqual(j.size[0], 256) |
|
84378ada15ab
test_decode_brainix_as_jpeg
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
58
diff
changeset
|
2928 self.assertEqual(j.size[1], 256) |
|
84378ada15ab
test_decode_brainix_as_jpeg
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
58
diff
changeset
|
2929 |
|
84378ada15ab
test_decode_brainix_as_jpeg
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
58
diff
changeset
|
2930 j = GetImage(_REMOTE, '/instances/%s/preview' % i, headers = { 'Accept' : '*/*' }) |
|
84378ada15ab
test_decode_brainix_as_jpeg
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
58
diff
changeset
|
2931 self.assertEqual('PNG', j.format) |
|
84378ada15ab
test_decode_brainix_as_jpeg
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
58
diff
changeset
|
2932 |
|
84378ada15ab
test_decode_brainix_as_jpeg
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
58
diff
changeset
|
2933 j = GetImage(_REMOTE, '/instances/%s/preview' % i, headers = { 'Accept' : 'image/*' }) |
|
84378ada15ab
test_decode_brainix_as_jpeg
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
58
diff
changeset
|
2934 self.assertEqual('PNG', j.format) |
|
84378ada15ab
test_decode_brainix_as_jpeg
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
58
diff
changeset
|
2935 |
|
84378ada15ab
test_decode_brainix_as_jpeg
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
58
diff
changeset
|
2936 j = GetImage(_REMOTE, '/instances/%s/preview' % i, headers = { 'Accept' : 'image/png' }) |
|
84378ada15ab
test_decode_brainix_as_jpeg
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
58
diff
changeset
|
2937 self.assertEqual('PNG', j.format) |
|
84378ada15ab
test_decode_brainix_as_jpeg
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
58
diff
changeset
|
2938 |
|
84378ada15ab
test_decode_brainix_as_jpeg
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
58
diff
changeset
|
2939 j = GetImage(_REMOTE, '/instances/%s/preview' % i, headers = { 'Accept' : 'image/jpeg' }) |
|
84378ada15ab
test_decode_brainix_as_jpeg
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
58
diff
changeset
|
2940 self.assertEqual('JPEG', j.format) |
|
84378ada15ab
test_decode_brainix_as_jpeg
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
58
diff
changeset
|
2941 self.assertEqual(j.size[0], 256) |
|
84378ada15ab
test_decode_brainix_as_jpeg
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
58
diff
changeset
|
2942 self.assertEqual(j.size[1], 256) |
|
84378ada15ab
test_decode_brainix_as_jpeg
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
58
diff
changeset
|
2943 |
|
84378ada15ab
test_decode_brainix_as_jpeg
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
58
diff
changeset
|
2944 a = len(DoGet(_REMOTE, '/instances/%s/preview?quality=50' % i, headers = { 'Accept' : 'image/jpeg' })) |
|
84378ada15ab
test_decode_brainix_as_jpeg
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
58
diff
changeset
|
2945 b = len(DoGet(_REMOTE, '/instances/%s/preview' % i, headers = { 'Accept' : 'image/jpeg' })) |
|
84378ada15ab
test_decode_brainix_as_jpeg
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
58
diff
changeset
|
2946 self.assertLess(a, b) |
|
84378ada15ab
test_decode_brainix_as_jpeg
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
58
diff
changeset
|
2947 |
|
84378ada15ab
test_decode_brainix_as_jpeg
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
58
diff
changeset
|
2948 j = GetImage(_REMOTE, '/instances/%s/image-uint8' % i, headers = { 'Accept' : 'image/jpeg' }) |
|
84378ada15ab
test_decode_brainix_as_jpeg
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
58
diff
changeset
|
2949 self.assertEqual('JPEG', j.format) |
|
84378ada15ab
test_decode_brainix_as_jpeg
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
58
diff
changeset
|
2950 |
|
84378ada15ab
test_decode_brainix_as_jpeg
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
58
diff
changeset
|
2951 # 16bit encoding is not supported with JPEG |
|
84378ada15ab
test_decode_brainix_as_jpeg
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
58
diff
changeset
|
2952 self.assertRaises(Exception, lambda: GetImage(_REMOTE, '/instances/%s/image-uint16' % i, headers = { 'Accept' : 'image/jpeg' })) |
|
84378ada15ab
test_decode_brainix_as_jpeg
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
58
diff
changeset
|
2953 self.assertRaises(Exception, lambda: GetImage(_REMOTE, '/instances/%s/image-int16' % i, headers = { 'Accept' : 'image/jpeg' })) |
|
84378ada15ab
test_decode_brainix_as_jpeg
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
58
diff
changeset
|
2954 |
|
84378ada15ab
test_decode_brainix_as_jpeg
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
58
diff
changeset
|
2955 # No matching content type |
|
84378ada15ab
test_decode_brainix_as_jpeg
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
58
diff
changeset
|
2956 self.assertRaises(Exception, lambda: GetImage(_REMOTE, '/instances/%s/preview' % i, headers = { 'Accept' : 'application/pdf' })) |
|
69
83fd88230097
test_media_encodings
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
68
diff
changeset
|
2957 |
|
83fd88230097
test_media_encodings
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
68
diff
changeset
|
2958 |
|
83fd88230097
test_media_encodings
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
68
diff
changeset
|
2959 |
|
83fd88230097
test_media_encodings
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
68
diff
changeset
|
2960 def test_media_encodings(self): |
|
83fd88230097
test_media_encodings
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
68
diff
changeset
|
2961 ascii = UploadInstance(_REMOTE, 'Knee/T1/IM-0001-0001.dcm')['ID'] |
|
83fd88230097
test_media_encodings
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
68
diff
changeset
|
2962 latin1 = UploadInstance(_REMOTE, 'Brainix/Epi/IM-0001-0001.dcm')['ID'] |
|
83fd88230097
test_media_encodings
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
68
diff
changeset
|
2963 latin2 = UploadInstance(_REMOTE, 'MarekLatin2.dcm')['ID'] |
|
83fd88230097
test_media_encodings
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
68
diff
changeset
|
2964 |
|
83fd88230097
test_media_encodings
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
68
diff
changeset
|
2965 tmp = DoPost(_REMOTE, '/tools/create-media', [ascii,latin1,latin2]) |
|
83fd88230097
test_media_encodings
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
68
diff
changeset
|
2966 z = zipfile.ZipFile(StringIO(tmp), "r") |
|
83fd88230097
test_media_encodings
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
68
diff
changeset
|
2967 |
|
83fd88230097
test_media_encodings
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
68
diff
changeset
|
2968 self.assertEqual(4, len(z.namelist())) |
|
83fd88230097
test_media_encodings
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
68
diff
changeset
|
2969 self.assertTrue('IMAGES/IM0' in z.namelist()) |
|
83fd88230097
test_media_encodings
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
68
diff
changeset
|
2970 self.assertTrue('IMAGES/IM1' in z.namelist()) |
|
83fd88230097
test_media_encodings
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
68
diff
changeset
|
2971 self.assertTrue('IMAGES/IM2' in z.namelist()) |
|
83fd88230097
test_media_encodings
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
68
diff
changeset
|
2972 self.assertTrue('DICOMDIR' in z.namelist()) |
|
83fd88230097
test_media_encodings
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
68
diff
changeset
|
2973 |
|
83fd88230097
test_media_encodings
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
68
diff
changeset
|
2974 try: |
|
83fd88230097
test_media_encodings
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
68
diff
changeset
|
2975 os.remove('/tmp/DICOMDIR') |
|
83fd88230097
test_media_encodings
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
68
diff
changeset
|
2976 except: |
|
83fd88230097
test_media_encodings
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
68
diff
changeset
|
2977 # The file does not exist |
|
83fd88230097
test_media_encodings
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
68
diff
changeset
|
2978 pass |
|
83fd88230097
test_media_encodings
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
68
diff
changeset
|
2979 |
|
83fd88230097
test_media_encodings
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
68
diff
changeset
|
2980 z.extract('DICOMDIR', '/tmp') |
|
83fd88230097
test_media_encodings
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
68
diff
changeset
|
2981 a = subprocess.check_output([ FindExecutable('dciodvfy'), '/tmp/DICOMDIR' ], |
|
83fd88230097
test_media_encodings
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
68
diff
changeset
|
2982 stderr = subprocess.STDOUT).split('\n') |
|
83fd88230097
test_media_encodings
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
68
diff
changeset
|
2983 |
|
83fd88230097
test_media_encodings
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
68
diff
changeset
|
2984 a = subprocess.check_output([ FindExecutable('dcentvfy'), '/tmp/DICOMDIR' ], |
|
83fd88230097
test_media_encodings
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
68
diff
changeset
|
2985 stderr = subprocess.STDOUT).split('\n') |
|
83fd88230097
test_media_encodings
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
68
diff
changeset
|
2986 self.assertEqual(1, len(a)) |
|
83fd88230097
test_media_encodings
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
68
diff
changeset
|
2987 self.assertEqual('', a[0]) |
|
83fd88230097
test_media_encodings
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
68
diff
changeset
|
2988 |
|
83fd88230097
test_media_encodings
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
68
diff
changeset
|
2989 a = subprocess.check_output([ FindExecutable('dcm2xml'), '/tmp/DICOMDIR' ]) |
|
83fd88230097
test_media_encodings
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
68
diff
changeset
|
2990 self.assertTrue(re.search('1.3.46.670589.11.17521.5.0.3124.2008081908590448738', a) != None) |
|
83fd88230097
test_media_encodings
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
68
diff
changeset
|
2991 self.assertTrue(re.search('1.3.46.670589.11.0.0.11.4.2.0.8743.5.5396.2006120114333648576', a) != None) |
|
83fd88230097
test_media_encodings
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
68
diff
changeset
|
2992 self.assertTrue(re.search('1.2.826.0.1.3680043.2.1569.1.4.323026757.1700.1399452091.57', a) != None) |
|
83fd88230097
test_media_encodings
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
68
diff
changeset
|
2993 |
|
83fd88230097
test_media_encodings
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
68
diff
changeset
|
2994 os.remove('/tmp/DICOMDIR') |
|
71
48740070cbf1
TDD: tests for ongoing development of counter tags in C-Find
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
70
diff
changeset
|
2995 |
|
48740070cbf1
TDD: tests for ongoing development of counter tags in C-Find
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
70
diff
changeset
|
2996 |
|
48740070cbf1
TDD: tests for ongoing development of counter tags in C-Find
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
70
diff
changeset
|
2997 def test_findscu_counters(self): |
|
48740070cbf1
TDD: tests for ongoing development of counter tags in C-Find
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
70
diff
changeset
|
2998 UploadInstance(_REMOTE, 'Comunix/Ct/IM-0001-0001.dcm') |
|
48740070cbf1
TDD: tests for ongoing development of counter tags in C-Find
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
70
diff
changeset
|
2999 UploadInstance(_REMOTE, 'Comunix/Pet/IM-0001-0001.dcm') |
|
48740070cbf1
TDD: tests for ongoing development of counter tags in C-Find
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
70
diff
changeset
|
3000 UploadInstance(_REMOTE, 'Comunix/Pet/IM-0001-0002.dcm') |
|
48740070cbf1
TDD: tests for ongoing development of counter tags in C-Find
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
70
diff
changeset
|
3001 |
|
48740070cbf1
TDD: tests for ongoing development of counter tags in C-Find
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
70
diff
changeset
|
3002 i = CallFindScu([ '-k', '0008,0052=PATIENT', '-k', 'NumberOfPatientRelatedStudies' ]) |
|
48740070cbf1
TDD: tests for ongoing development of counter tags in C-Find
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
70
diff
changeset
|
3003 s = re.findall('\(0020,1200\).*?\[(.*?)\]', i) |
|
48740070cbf1
TDD: tests for ongoing development of counter tags in C-Find
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
70
diff
changeset
|
3004 self.assertEqual(1, len(s)) |
|
48740070cbf1
TDD: tests for ongoing development of counter tags in C-Find
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
70
diff
changeset
|
3005 self.assertTrue('1 ' in s) |
|
48740070cbf1
TDD: tests for ongoing development of counter tags in C-Find
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
70
diff
changeset
|
3006 |
|
48740070cbf1
TDD: tests for ongoing development of counter tags in C-Find
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
70
diff
changeset
|
3007 i = CallFindScu([ '-k', '0008,0052=PATIENT', '-k', 'NumberOfPatientRelatedSeries' ]) |
|
48740070cbf1
TDD: tests for ongoing development of counter tags in C-Find
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
70
diff
changeset
|
3008 s = re.findall('\(0020,1202\).*?\[(.*?)\]', i) |
|
48740070cbf1
TDD: tests for ongoing development of counter tags in C-Find
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
70
diff
changeset
|
3009 self.assertEqual(1, len(s)) |
|
48740070cbf1
TDD: tests for ongoing development of counter tags in C-Find
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
70
diff
changeset
|
3010 self.assertTrue('2 ' in s) |
|
48740070cbf1
TDD: tests for ongoing development of counter tags in C-Find
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
70
diff
changeset
|
3011 |
|
48740070cbf1
TDD: tests for ongoing development of counter tags in C-Find
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
70
diff
changeset
|
3012 i = CallFindScu([ '-k', '0008,0052=PATIENT', '-k', 'NumberOfPatientRelatedInstances' ]) |
|
48740070cbf1
TDD: tests for ongoing development of counter tags in C-Find
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
70
diff
changeset
|
3013 s = re.findall('\(0020,1204\).*?\[(.*?)\]', i) |
|
48740070cbf1
TDD: tests for ongoing development of counter tags in C-Find
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
70
diff
changeset
|
3014 self.assertEqual(1, len(s)) |
|
48740070cbf1
TDD: tests for ongoing development of counter tags in C-Find
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
70
diff
changeset
|
3015 self.assertTrue('3 ' in s) |
|
48740070cbf1
TDD: tests for ongoing development of counter tags in C-Find
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
70
diff
changeset
|
3016 |
|
48740070cbf1
TDD: tests for ongoing development of counter tags in C-Find
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
70
diff
changeset
|
3017 i = CallFindScu([ '-k', '0008,0052=STUDY', '-k', 'NumberOfStudyRelatedSeries' ]) |
|
48740070cbf1
TDD: tests for ongoing development of counter tags in C-Find
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
70
diff
changeset
|
3018 s = re.findall('\(0020,1206\).*?\[(.*?)\]', i) |
|
48740070cbf1
TDD: tests for ongoing development of counter tags in C-Find
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
70
diff
changeset
|
3019 self.assertEqual(1, len(s)) |
|
48740070cbf1
TDD: tests for ongoing development of counter tags in C-Find
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
70
diff
changeset
|
3020 self.assertTrue('2 ' in s) |
|
48740070cbf1
TDD: tests for ongoing development of counter tags in C-Find
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
70
diff
changeset
|
3021 |
|
48740070cbf1
TDD: tests for ongoing development of counter tags in C-Find
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
70
diff
changeset
|
3022 i = CallFindScu([ '-k', '0008,0052=STUDY', '-k', 'NumberOfStudyRelatedInstances' ]) |
|
48740070cbf1
TDD: tests for ongoing development of counter tags in C-Find
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
70
diff
changeset
|
3023 s = re.findall('\(0020,1208\).*?\[(.*?)\]', i) |
|
48740070cbf1
TDD: tests for ongoing development of counter tags in C-Find
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
70
diff
changeset
|
3024 self.assertEqual(1, len(s)) |
|
48740070cbf1
TDD: tests for ongoing development of counter tags in C-Find
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
70
diff
changeset
|
3025 self.assertTrue('3 ' in s) |
|
48740070cbf1
TDD: tests for ongoing development of counter tags in C-Find
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
70
diff
changeset
|
3026 |
|
48740070cbf1
TDD: tests for ongoing development of counter tags in C-Find
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
70
diff
changeset
|
3027 i = CallFindScu([ '-k', '0008,0052=SERIES', '-k', 'NumberOfSeriesRelatedInstances' ]) |
|
48740070cbf1
TDD: tests for ongoing development of counter tags in C-Find
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
70
diff
changeset
|
3028 s = re.findall('\(0020,1209\).*?\[(.*?)\]', i) |
|
48740070cbf1
TDD: tests for ongoing development of counter tags in C-Find
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
70
diff
changeset
|
3029 self.assertEqual(2, len(s)) |
|
48740070cbf1
TDD: tests for ongoing development of counter tags in C-Find
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
70
diff
changeset
|
3030 self.assertTrue('1 ' in s) |
|
48740070cbf1
TDD: tests for ongoing development of counter tags in C-Find
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
70
diff
changeset
|
3031 self.assertTrue('2 ' in s) |
|
48740070cbf1
TDD: tests for ongoing development of counter tags in C-Find
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
70
diff
changeset
|
3032 |
|
48740070cbf1
TDD: tests for ongoing development of counter tags in C-Find
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
70
diff
changeset
|
3033 i = CallFindScu([ '-k', '0008,0052=STUDY', '-k', 'ModalitiesInStudy' ]) |
|
48740070cbf1
TDD: tests for ongoing development of counter tags in C-Find
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
70
diff
changeset
|
3034 s = re.findall('\(0008,0061\).*?\[(.*?)\]', i) |
|
48740070cbf1
TDD: tests for ongoing development of counter tags in C-Find
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
70
diff
changeset
|
3035 self.assertEqual(1, len(s)) |
|
48740070cbf1
TDD: tests for ongoing development of counter tags in C-Find
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
70
diff
changeset
|
3036 t = map(lambda x: x.strip(), s[0].split('\\')) |
|
48740070cbf1
TDD: tests for ongoing development of counter tags in C-Find
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
70
diff
changeset
|
3037 self.assertTrue('PT' in t) |
|
48740070cbf1
TDD: tests for ongoing development of counter tags in C-Find
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
70
diff
changeset
|
3038 self.assertTrue('CT' in t) |
|
48740070cbf1
TDD: tests for ongoing development of counter tags in C-Find
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
70
diff
changeset
|
3039 |
|
48740070cbf1
TDD: tests for ongoing development of counter tags in C-Find
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
70
diff
changeset
|
3040 i = CallFindScu([ '-k', '0008,0052=STUDY', '-k', 'SOPClassesInStudy' ]) |
|
48740070cbf1
TDD: tests for ongoing development of counter tags in C-Find
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
70
diff
changeset
|
3041 s = re.findall('\(0008,0062\).*?\[(.*?)\]', i) |
|
48740070cbf1
TDD: tests for ongoing development of counter tags in C-Find
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
70
diff
changeset
|
3042 self.assertEqual(1, len(s)) |
|
176
48cc188ffb09
strip trailing 0 char that appears with some findscu versions
am@osimis.io
parents:
175
diff
changeset
|
3043 t = map(lambda x: x.strip('\x00'), s[0].split('\\')) |
|
71
48740070cbf1
TDD: tests for ongoing development of counter tags in C-Find
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
70
diff
changeset
|
3044 self.assertTrue('1.2.840.10008.5.1.4.1.1.2' in t) |
|
48740070cbf1
TDD: tests for ongoing development of counter tags in C-Find
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
70
diff
changeset
|
3045 self.assertTrue('1.2.840.10008.5.1.4.1.1.128' in t) |
|
48740070cbf1
TDD: tests for ongoing development of counter tags in C-Find
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
70
diff
changeset
|
3046 |
|
48740070cbf1
TDD: tests for ongoing development of counter tags in C-Find
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
70
diff
changeset
|
3047 |
|
78
b89af51797ff
test_decode_transfer_syntax
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
74
diff
changeset
|
3048 def test_decode_transfer_syntax(self): |
|
b89af51797ff
test_decode_transfer_syntax
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
74
diff
changeset
|
3049 def Check(t, md5): |
|
b89af51797ff
test_decode_transfer_syntax
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
74
diff
changeset
|
3050 i = UploadInstance(_REMOTE, 'TransferSyntaxes/%s.dcm' % t)['ID'] |
|
b89af51797ff
test_decode_transfer_syntax
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
74
diff
changeset
|
3051 |
|
89
74b7b9aed5f8
test TransferSyntax metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
87
diff
changeset
|
3052 if t != '1.2.840.10008.1.2': # This file has no meta header |
|
74b7b9aed5f8
test TransferSyntax metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
87
diff
changeset
|
3053 transferSyntax = DoGet(_REMOTE, '/instances/%s/metadata/TransferSyntax' % i) |
|
74b7b9aed5f8
test TransferSyntax metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
87
diff
changeset
|
3054 self.assertEqual(t, transferSyntax) |
|
74b7b9aed5f8
test TransferSyntax metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
87
diff
changeset
|
3055 |
|
78
b89af51797ff
test_decode_transfer_syntax
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
74
diff
changeset
|
3056 if md5 == None: |
|
b89af51797ff
test_decode_transfer_syntax
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
74
diff
changeset
|
3057 self.assertRaises(Exception, lambda: DoGet(_REMOTE, '/instances/%s/preview' % i)) |
|
b89af51797ff
test_decode_transfer_syntax
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
74
diff
changeset
|
3058 else: |
|
b89af51797ff
test_decode_transfer_syntax
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
74
diff
changeset
|
3059 m = ComputeMD5(DoGet(_REMOTE, '/instances/%s/preview' % i)) |
|
b89af51797ff
test_decode_transfer_syntax
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
74
diff
changeset
|
3060 self.assertEqual(m, md5) |
|
b89af51797ff
test_decode_transfer_syntax
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
74
diff
changeset
|
3061 |
|
b89af51797ff
test_decode_transfer_syntax
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
74
diff
changeset
|
3062 Check('1.2.840.10008.1.2.1', 'fae08d5415c4c0cd2cdbae4522408631') |
|
b89af51797ff
test_decode_transfer_syntax
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
74
diff
changeset
|
3063 Check('1.2.840.10008.1.2.2', 'f3d9784768b8feb54d6a50b6d5c37682') |
|
b89af51797ff
test_decode_transfer_syntax
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
74
diff
changeset
|
3064 Check('1.2.840.10008.1.2.4.50', '496326046974eea718dbc16b997c646b') |
|
b89af51797ff
test_decode_transfer_syntax
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
74
diff
changeset
|
3065 Check('1.2.840.10008.1.2.4.51', 'ccbe75909fe5c9f7361b48416a53fc41') |
|
b89af51797ff
test_decode_transfer_syntax
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
74
diff
changeset
|
3066 Check('1.2.840.10008.1.2.4.57', '7bbefe11d976b1be4e568915c6a82fc3') |
|
b89af51797ff
test_decode_transfer_syntax
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
74
diff
changeset
|
3067 Check('1.2.840.10008.1.2.4.70', '7132cfbc457305b04b59787030c785d2') |
|
b89af51797ff
test_decode_transfer_syntax
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
74
diff
changeset
|
3068 Check('1.2.840.10008.1.2.4.80', '6ff51ae525d362e0d04f550a64075a0e') |
|
b89af51797ff
test_decode_transfer_syntax
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
74
diff
changeset
|
3069 Check('1.2.840.10008.1.2.4.81', '801579ae7cbf28e604ea74f2c99fa2ca') |
|
b89af51797ff
test_decode_transfer_syntax
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
74
diff
changeset
|
3070 Check('1.2.840.10008.1.2.5', '6ff51ae525d362e0d04f550a64075a0e') # RLE, supported since Orthanc 1.0.1 |
|
b89af51797ff
test_decode_transfer_syntax
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
74
diff
changeset
|
3071 Check('1.2.840.10008.1.2', 'd54aed9f67a100984b42942cc2e9939b') |
|
b89af51797ff
test_decode_transfer_syntax
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
74
diff
changeset
|
3072 Check('1.2.840.10008.1.2.4.90', None) # JPEG-2000 image, not supported |
|
b89af51797ff
test_decode_transfer_syntax
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
74
diff
changeset
|
3073 Check('1.2.840.10008.1.2.4.91', None) # JPEG-2000 image, not supported |
| 79 | 3074 |
| 3075 | |
| 3076 def test_raw_frame(self): | |
| 3077 s = UploadInstance(_REMOTE, 'Issue22.dcm')['ID'] | |
| 3078 self.assertEqual(24, len(DoGet(_REMOTE, '/instances/%s/frames' % s))) | |
| 3079 a = DoGet(_REMOTE, '/instances/%s/frames/0/raw' % s) | |
| 3080 self.assertEqual(512 * 512 * 2, len(a)) | |
| 3081 self.assertEqual(512 * 512 * 2, len(DoGet(_REMOTE, '/instances/%s/frames/23/raw' % s))) | |
| 3082 self.assertRaises(Exception, lambda: DoGet(_REMOTE, '/instances/%s/frames/24/raw' % s)) | |
| 3083 self.assertEqual('1914287dc4d958eca21fdaacfb3482fa', ComputeMD5(a)) | |
| 3084 | |
| 3085 s = UploadInstance(_REMOTE, 'Multiframe.dcm')['ID'] | |
| 3086 self.assertEqual(76, len(DoGet(_REMOTE, '/instances/%s/frames' % s))) | |
| 3087 self.assertEqual(186274, len(DoGet(_REMOTE, '/instances/%s/frames/0/raw' % s))) | |
| 3088 self.assertEqual(189424, len(DoGet(_REMOTE, '/instances/%s/frames/75/raw' % s))) | |
| 3089 self.assertRaises(Exception, lambda: DoGet(_REMOTE, '/instances/%s/frames/76/raw' % s)) | |
| 3090 im = GetImage(_REMOTE, '/instances/%s/frames/0/raw' % s) | |
| 3091 self.assertEqual("L", im.mode) | |
| 3092 self.assertEqual(512, im.size[0]) | |
| 3093 self.assertEqual(512, im.size[1]) | |
| 3094 | |
| 3095 # Test an image with 2 JPEG frames spread over multiple fragments | |
| 3096 s = UploadInstance(_REMOTE, 'LenaTwiceWithFragments.dcm')['ID'] | |
| 3097 self.assertEqual(2, len(DoGet(_REMOTE, '/instances/%s/frames' % s))) | |
| 3098 a = DoGet(_REMOTE, '/instances/%s/frames/0/raw' % s) | |
| 3099 b = DoGet(_REMOTE, '/instances/%s/frames/1/raw' % s) | |
| 3100 self.assertEqual(69214, len(a)) | |
| 3101 self.assertEqual(ComputeMD5(a), ComputeMD5(b)) | |
| 3102 self.assertRaises(Exception, lambda: DoGet(_REMOTE, '/instances/%s/frames/2/raw' % s)) | |
| 3103 im = GetImage(_REMOTE, '/instances/%s/frames/0/raw' % s) | |
| 3104 self.assertEqual("RGB", im.mode) | |
| 3105 self.assertEqual(512, im.size[0]) | |
| 3106 self.assertEqual(512, im.size[1]) | |
| 3107 im = GetImage(_REMOTE, '/instances/%s/frames/0/preview' % s) | |
| 3108 self.assertEqual("RGB", im.mode) | |
| 3109 self.assertEqual(512, im.size[0]) | |
| 3110 self.assertEqual(512, im.size[1]) | |
| 81 | 3111 |
| 3112 | |
| 3113 | |
| 3114 def test_rest_movescu(self): | |
| 3115 self.assertEqual(0, len(DoGet(_REMOTE, '/patients'))) | |
| 3116 | |
| 3117 # Upload 4 instances | |
| 3118 UploadInstance(_REMOTE, 'Brainix/Flair/IM-0001-0001.dcm') | |
| 3119 UploadInstance(_REMOTE, 'Brainix/Flair/IM-0001-0002.dcm') | |
| 3120 UploadInstance(_REMOTE, 'Brainix/Epi/IM-0001-0001.dcm') | |
| 3121 UploadInstance(_REMOTE, 'Knee/T2/IM-0001-0001.dcm') | |
| 3122 | |
| 3123 self.assertEqual(2, len(DoGet(_REMOTE, '/patients'))) | |
| 3124 for p in DoGet(_REMOTE, '/patients'): | |
| 3125 DoPost(_REMOTE, '/modalities/orthanctest/store', p) | |
| 3126 DoDelete(_REMOTE, '/patients/%s' % p) | |
| 3127 | |
| 3128 self.assertEqual(0, len(DoGet(_REMOTE, '/patients'))) | |
| 3129 | |
| 3130 # Upload instance Brainix/Flair/IM-0001-0001.dcm | |
| 3131 DoPost(_REMOTE, '/modalities/orthanctest/move', { 'Level' : 'Instance', | |
| 3132 'Resources' : [ | |
| 3133 { | |
| 3134 'StudyInstanceUID' : '2.16.840.1.113669.632.20.1211.10000357775', | |
| 3135 'SeriesInstanceUID' : '1.3.46.670589.11.0.0.11.4.2.0.8743.5.5396.2006120114285654497', | |
| 3136 'SOPInstanceUID' : '1.3.46.670589.11.0.0.11.4.2.0.8743.5.5396.2006120114314079549', | |
| 3137 } | |
| 3138 ]}) | |
| 3139 | |
| 3140 # Upload series Brainix/Flair/* | |
| 3141 self.assertEqual(1, len(DoGet(_REMOTE, '/patients'))) | |
| 3142 self.assertEqual(1, len(DoGet(_REMOTE, '/studies'))) | |
| 3143 self.assertEqual(1, len(DoGet(_REMOTE, '/series'))) | |
| 3144 self.assertEqual(1, len(DoGet(_REMOTE, '/instances'))) | |
| 3145 | |
| 3146 DoPost(_REMOTE, '/modalities/orthanctest/move', { 'Level' : 'Series', | |
| 3147 'Resources' : [ | |
| 3148 { | |
| 3149 'StudyInstanceUID' : '2.16.840.1.113669.632.20.1211.10000357775', | |
| 3150 'SeriesInstanceUID' : '1.3.46.670589.11.0.0.11.4.2.0.8743.5.5396.2006120114285654497', | |
| 3151 } | |
| 3152 ]}) | |
| 3153 self.assertEqual(1, len(DoGet(_REMOTE, '/patients'))) | |
| 3154 self.assertEqual(1, len(DoGet(_REMOTE, '/studies'))) | |
| 3155 self.assertEqual(1, len(DoGet(_REMOTE, '/series'))) | |
| 3156 self.assertEqual(2, len(DoGet(_REMOTE, '/instances'))) | |
| 3157 | |
| 3158 # Upload series Brainix/Epi/* | |
| 3159 DoPost(_REMOTE, '/modalities/orthanctest/move', { 'Level' : 'Series', | |
| 3160 'Resources' : [ | |
| 3161 { | |
| 3162 'StudyInstanceUID' : '2.16.840.1.113669.632.20.1211.10000357775', | |
| 3163 'SeriesInstanceUID' : '1.3.46.670589.11.0.0.11.4.2.0.8743.5.5396.2006120114314125550', | |
| 3164 } | |
| 3165 ]}) | |
| 3166 self.assertEqual(1, len(DoGet(_REMOTE, '/patients'))) | |
| 3167 self.assertEqual(1, len(DoGet(_REMOTE, '/studies'))) | |
| 3168 self.assertEqual(2, len(DoGet(_REMOTE, '/series'))) | |
| 3169 self.assertEqual(3, len(DoGet(_REMOTE, '/instances'))) | |
| 3170 | |
| 3171 # Upload study Knee/* | |
| 3172 DoPost(_REMOTE, '/modalities/orthanctest/move', { 'Level' : 'Study', | |
| 3173 'Resources' : [ | |
| 3174 { | |
| 3175 'StudyInstanceUID' : '2.16.840.1.113669.632.20.121711.10000160881', | |
| 3176 } | |
| 3177 ]}) | |
| 3178 self.assertEqual(2, len(DoGet(_REMOTE, '/patients'))) | |
| 3179 self.assertEqual(2, len(DoGet(_REMOTE, '/studies'))) | |
| 3180 self.assertEqual(3, len(DoGet(_REMOTE, '/series'))) | |
| 3181 self.assertEqual(4, len(DoGet(_REMOTE, '/instances'))) | |
| 3182 | |
| 3183 # Reset | |
| 3184 for p in DoGet(_REMOTE, '/patients'): | |
| 3185 DoDelete(_REMOTE, '/patients/%s' % p) | |
| 3186 | |
| 3187 self.assertEqual(0, len(DoGet(_REMOTE, '/patients'))) | |
| 3188 | |
| 3189 | |
| 3190 # Upload all at once | |
| 3191 DoPost(_REMOTE, '/modalities/orthanctest/move', { 'Level' : 'Study', | |
| 3192 'Resources' : [ | |
| 3193 { | |
| 3194 'StudyInstanceUID' : '2.16.840.1.113669.632.20.121711.10000160881', | |
| 3195 }, | |
| 3196 { | |
| 3197 'StudyInstanceUID' : '2.16.840.1.113669.632.20.1211.10000357775', | |
| 3198 } | |
| 3199 ]}) | |
| 3200 self.assertEqual(2, len(DoGet(_REMOTE, '/patients'))) | |
| 3201 self.assertEqual(2, len(DoGet(_REMOTE, '/studies'))) | |
| 3202 self.assertEqual(3, len(DoGet(_REMOTE, '/series'))) | |
| 3203 self.assertEqual(4, len(DoGet(_REMOTE, '/instances'))) | |
| 3204 | |
|
86
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83
diff
changeset
|
3205 |
|
0401ef51f5c1
test_reconstruct_json
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parents:
83
diff
changeset
|
3206 |
|
0401ef51f5c1
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parents:
83
diff
changeset
|
3207 def test_reconstruct_json(self): |
|
0401ef51f5c1
test_reconstruct_json
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parents:
83
diff
changeset
|
3208 self.assertEqual(0, len(DoGet(_REMOTE, '/patients'))) |
|
0401ef51f5c1
test_reconstruct_json
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
83
diff
changeset
|
3209 |
|
0401ef51f5c1
test_reconstruct_json
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
83
diff
changeset
|
3210 instance = UploadInstance(_REMOTE, 'DummyCT.dcm')['ID'] |
|
0401ef51f5c1
test_reconstruct_json
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
83
diff
changeset
|
3211 first = DoGet(_REMOTE, '/instances/%s/tags' % instance) |
|
0401ef51f5c1
test_reconstruct_json
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
83
diff
changeset
|
3212 |
|
0401ef51f5c1
test_reconstruct_json
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
83
diff
changeset
|
3213 self.assertEqual('TWINOW', first['0008,1010']['Value']) |
|
0401ef51f5c1
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Sebastien Jodogne <s.jodogne@gmail.com>
parents:
83
diff
changeset
|
3214 self.assertEqual(2, len(DoGet(_REMOTE, '/instances/%s/attachments' % instance))) |
|
0401ef51f5c1
test_reconstruct_json
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
83
diff
changeset
|
3215 |
|
0401ef51f5c1
test_reconstruct_json
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
83
diff
changeset
|
3216 # Cannot delete the "DICOM" attachment |
|
0401ef51f5c1
test_reconstruct_json
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
83
diff
changeset
|
3217 self.assertRaises(Exception, lambda: DoDelete(_REMOTE, '/instances/%s/attachments/dicom' % instance)) |
|
0401ef51f5c1
test_reconstruct_json
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
83
diff
changeset
|
3218 |
|
0401ef51f5c1
test_reconstruct_json
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
83
diff
changeset
|
3219 # Can delete the "DICOM as JSON" attachment |
|
0401ef51f5c1
test_reconstruct_json
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
83
diff
changeset
|
3220 r = DoDelete(_REMOTE, '/instances/%s/attachments/dicom-as-json' % instance) |
|
0401ef51f5c1
test_reconstruct_json
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
83
diff
changeset
|
3221 self.assertTrue(type(r) is dict and len(r) == 0) |
|
0401ef51f5c1
test_reconstruct_json
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
83
diff
changeset
|
3222 |
|
0401ef51f5c1
test_reconstruct_json
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
83
diff
changeset
|
3223 # Only the "DICOM" attachment subsists |
|
0401ef51f5c1
test_reconstruct_json
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
83
diff
changeset
|
3224 self.assertEqual(1, len(DoGet(_REMOTE, '/instances/%s/attachments' % instance))) |
|
0401ef51f5c1
test_reconstruct_json
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
83
diff
changeset
|
3225 |
|
0401ef51f5c1
test_reconstruct_json
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
83
diff
changeset
|
3226 # Cannot manually reconstruct the "DICOM as JSON" attachment |
|
0401ef51f5c1
test_reconstruct_json
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
83
diff
changeset
|
3227 self.assertRaises(Exception, lambda: DoPut(_REMOTE, '/patients/%s/attachments/dicom-as-json' % patient, 'hello')) |
|
0401ef51f5c1
test_reconstruct_json
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
83
diff
changeset
|
3228 |
|
0401ef51f5c1
test_reconstruct_json
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
83
diff
changeset
|
3229 # Transparently reconstruct the "DICOM as JSON" attachment |
|
0401ef51f5c1
test_reconstruct_json
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
83
diff
changeset
|
3230 self.assertRaises(Exception, lambda: DoGet(_REMOTE, '/instances/%s/attachments/dicom-as-json' % instance)) |
|
0401ef51f5c1
test_reconstruct_json
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
83
diff
changeset
|
3231 second = DoGet(_REMOTE, '/instances/%s/tags' % instance) |
|
0401ef51f5c1
test_reconstruct_json
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
83
diff
changeset
|
3232 self.assertEqual(2, len(DoGet(_REMOTE, '/instances/%s/attachments' % instance))) |
|
0401ef51f5c1
test_reconstruct_json
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
83
diff
changeset
|
3233 |
|
0401ef51f5c1
test_reconstruct_json
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
83
diff
changeset
|
3234 third = DoGet(_REMOTE, '/instances/%s/attachments/dicom-as-json/data' % instance) |
|
0401ef51f5c1
test_reconstruct_json
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
83
diff
changeset
|
3235 self.assertEqual(str(first), str(second)) |
|
0401ef51f5c1
test_reconstruct_json
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
83
diff
changeset
|
3236 self.assertEqual(str(first), str(third)) |
|
87
4b24faec842b
test_reconstruct_json2 + test_private_tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
86
diff
changeset
|
3237 |
|
4b24faec842b
test_reconstruct_json2 + test_private_tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
86
diff
changeset
|
3238 |
|
4b24faec842b
test_reconstruct_json2 + test_private_tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
86
diff
changeset
|
3239 def test_reconstruct_json2(self): |
|
4b24faec842b
test_reconstruct_json2 + test_private_tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
86
diff
changeset
|
3240 self.assertEqual(0, len(DoGet(_REMOTE, '/patients'))) |
|
4b24faec842b
test_reconstruct_json2 + test_private_tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
86
diff
changeset
|
3241 |
|
4b24faec842b
test_reconstruct_json2 + test_private_tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
86
diff
changeset
|
3242 a = UploadInstance(_REMOTE, 'Brainix/Flair/IM-0001-0001.dcm')['ID'] |
|
4b24faec842b
test_reconstruct_json2 + test_private_tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
86
diff
changeset
|
3243 b = UploadInstance(_REMOTE, 'Knee/T2/IM-0001-0001.dcm')['ID'] |
|
4b24faec842b
test_reconstruct_json2 + test_private_tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
86
diff
changeset
|
3244 |
|
4b24faec842b
test_reconstruct_json2 + test_private_tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
86
diff
changeset
|
3245 self.assertEqual('BRAINIX', DoGet(_REMOTE, '/instances/%s/tags?simplify' % a)['PatientName']) |
|
4b24faec842b
test_reconstruct_json2 + test_private_tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
86
diff
changeset
|
3246 self.assertEqual('KNEE', DoGet(_REMOTE, '/instances/%s/tags?simplify' % b)['PatientName']) |
|
4b24faec842b
test_reconstruct_json2 + test_private_tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
86
diff
changeset
|
3247 |
|
4b24faec842b
test_reconstruct_json2 + test_private_tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
86
diff
changeset
|
3248 self.assertEqual(2, len(DoGet(_REMOTE, '/instances/%s/attachments' % a))) |
|
4b24faec842b
test_reconstruct_json2 + test_private_tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
86
diff
changeset
|
3249 self.assertEqual(2, len(DoGet(_REMOTE, '/instances/%s/attachments' % b))) |
|
4b24faec842b
test_reconstruct_json2 + test_private_tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
86
diff
changeset
|
3250 |
|
4b24faec842b
test_reconstruct_json2 + test_private_tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
86
diff
changeset
|
3251 DoPost(_REMOTE, '/tools/invalidate-tags', '', 'text/plain') |
|
4b24faec842b
test_reconstruct_json2 + test_private_tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
86
diff
changeset
|
3252 |
|
4b24faec842b
test_reconstruct_json2 + test_private_tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
86
diff
changeset
|
3253 self.assertEqual(1, len(DoGet(_REMOTE, '/instances/%s/attachments' % a))) |
|
4b24faec842b
test_reconstruct_json2 + test_private_tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
86
diff
changeset
|
3254 self.assertEqual(1, len(DoGet(_REMOTE, '/instances/%s/attachments' % b))) |
|
4b24faec842b
test_reconstruct_json2 + test_private_tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
86
diff
changeset
|
3255 |
|
4b24faec842b
test_reconstruct_json2 + test_private_tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
86
diff
changeset
|
3256 self.assertEqual('BRAINIX', DoGet(_REMOTE, '/instances/%s/tags?simplify' % a)['PatientName']) |
|
4b24faec842b
test_reconstruct_json2 + test_private_tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
86
diff
changeset
|
3257 self.assertEqual('KNEE', DoGet(_REMOTE, '/instances/%s/tags?simplify' % b)['PatientName']) |
|
4b24faec842b
test_reconstruct_json2 + test_private_tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
86
diff
changeset
|
3258 |
|
4b24faec842b
test_reconstruct_json2 + test_private_tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
86
diff
changeset
|
3259 self.assertEqual(2, len(DoGet(_REMOTE, '/instances/%s/attachments' % a))) |
|
4b24faec842b
test_reconstruct_json2 + test_private_tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
86
diff
changeset
|
3260 self.assertEqual(2, len(DoGet(_REMOTE, '/instances/%s/attachments' % b))) |
|
4b24faec842b
test_reconstruct_json2 + test_private_tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
86
diff
changeset
|
3261 |
|
4b24faec842b
test_reconstruct_json2 + test_private_tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
86
diff
changeset
|
3262 |
|
4b24faec842b
test_reconstruct_json2 + test_private_tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
86
diff
changeset
|
3263 def test_private_tags(self): |
|
4b24faec842b
test_reconstruct_json2 + test_private_tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
86
diff
changeset
|
3264 i = UploadInstance(_REMOTE, 'PrivateMDNTags.dcm')['ID'] |
|
4b24faec842b
test_reconstruct_json2 + test_private_tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
86
diff
changeset
|
3265 t = DoGet(_REMOTE, '/instances/%s/tags?simplify' % i) |
|
4b24faec842b
test_reconstruct_json2 + test_private_tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
86
diff
changeset
|
3266 self.assertEqual('1.2.840.113704.1.111.6320.1342451261.21', t['PET-CT Multi Modality Name']) |
|
4b24faec842b
test_reconstruct_json2 + test_private_tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
86
diff
changeset
|
3267 self.assertEqual('p37s0_na_ctac.img', t['Original Image Filename']) |
|
4b24faec842b
test_reconstruct_json2 + test_private_tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
86
diff
changeset
|
3268 |
|
92
dbcbffb889da
test_findscu_encoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
89
diff
changeset
|
3269 |
|
dbcbffb889da
test_findscu_encoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
89
diff
changeset
|
3270 def test_findscu_encoding(self): |
|
dbcbffb889da
test_findscu_encoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
89
diff
changeset
|
3271 # Check out ../Database/Encodings/Generate.sh |
|
dbcbffb889da
test_findscu_encoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
89
diff
changeset
|
3272 TEST = u'Test-éüäöòДΘĝדصķћ๛ﾈİ' |
|
dbcbffb889da
test_findscu_encoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
89
diff
changeset
|
3273 ENCODINGS = { |
|
dbcbffb889da
test_findscu_encoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
89
diff
changeset
|
3274 'Arabic' : [ 'ISO_IR 127' ], |
|
dbcbffb889da
test_findscu_encoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
89
diff
changeset
|
3275 'Ascii' : [ 'ISO_IR 6' ], # More accurately, ISO 646 |
|
dbcbffb889da
test_findscu_encoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
89
diff
changeset
|
3276 'Cyrillic' : [ 'ISO_IR 144' ], |
|
dbcbffb889da
test_findscu_encoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
89
diff
changeset
|
3277 'Greek' : [ 'ISO_IR 126' ], |
|
dbcbffb889da
test_findscu_encoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
89
diff
changeset
|
3278 'Hebrew' : [ 'ISO_IR 138' ], |
|
dbcbffb889da
test_findscu_encoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
89
diff
changeset
|
3279 'Japanese' : [ 'ISO_IR 13', 'shift-jis' ], |
|
dbcbffb889da
test_findscu_encoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
89
diff
changeset
|
3280 'Latin1' : [ 'ISO_IR 100' ], |
|
dbcbffb889da
test_findscu_encoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
89
diff
changeset
|
3281 'Latin2' : [ 'ISO_IR 101' ], |
|
dbcbffb889da
test_findscu_encoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
89
diff
changeset
|
3282 'Latin3' : [ 'ISO_IR 109' ], |
|
dbcbffb889da
test_findscu_encoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
89
diff
changeset
|
3283 'Latin4' : [ 'ISO_IR 110' ], |
|
dbcbffb889da
test_findscu_encoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
89
diff
changeset
|
3284 'Latin5' : [ 'ISO_IR 148' ], |
|
dbcbffb889da
test_findscu_encoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
89
diff
changeset
|
3285 'Thai' : [ 'ISO_IR 166', 'tis-620' ], |
|
dbcbffb889da
test_findscu_encoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
89
diff
changeset
|
3286 'Utf8' : [ 'ISO_IR 192' ], |
|
dbcbffb889da
test_findscu_encoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
89
diff
changeset
|
3287 } |
|
dbcbffb889da
test_findscu_encoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
89
diff
changeset
|
3288 |
|
dbcbffb889da
test_findscu_encoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
89
diff
changeset
|
3289 for name in ENCODINGS.iterkeys(): |
|
dbcbffb889da
test_findscu_encoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
89
diff
changeset
|
3290 if len(ENCODINGS[name]) == 1: |
|
dbcbffb889da
test_findscu_encoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
89
diff
changeset
|
3291 ENCODINGS[name].append(name.lower()) |
|
dbcbffb889da
test_findscu_encoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
89
diff
changeset
|
3292 |
|
dbcbffb889da
test_findscu_encoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
89
diff
changeset
|
3293 UploadInstance(_REMOTE, 'Encodings/Lena-utf8.dcm') |
|
dbcbffb889da
test_findscu_encoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
89
diff
changeset
|
3294 |
|
dbcbffb889da
test_findscu_encoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
89
diff
changeset
|
3295 for name in ENCODINGS.iterkeys(): |
|
dbcbffb889da
test_findscu_encoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
89
diff
changeset
|
3296 self.assertEqual(name, DoPut(_REMOTE, '/tools/default-encoding', name)) |
|
dbcbffb889da
test_findscu_encoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
89
diff
changeset
|
3297 self.assertEqual(name, DoGet(_REMOTE, '/tools/default-encoding')) |
|
dbcbffb889da
test_findscu_encoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
89
diff
changeset
|
3298 |
|
dbcbffb889da
test_findscu_encoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
89
diff
changeset
|
3299 i = CallFindScu([ '-k', '0008,0052=STUDY', |
|
dbcbffb889da
test_findscu_encoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
89
diff
changeset
|
3300 '-k', 'SpecificCharacterSet', |
|
dbcbffb889da
test_findscu_encoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
89
diff
changeset
|
3301 '-k', 'PatientName' ]) |
|
dbcbffb889da
test_findscu_encoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
89
diff
changeset
|
3302 |
|
dbcbffb889da
test_findscu_encoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
89
diff
changeset
|
3303 characterSet = re.findall('\(0008,0005\).*?\[(.*?)\]', i) |
|
dbcbffb889da
test_findscu_encoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
89
diff
changeset
|
3304 self.assertEqual(1, len(characterSet)) |
|
dbcbffb889da
test_findscu_encoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
89
diff
changeset
|
3305 self.assertEqual(ENCODINGS[name][0], characterSet[0].strip()) |
|
dbcbffb889da
test_findscu_encoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
89
diff
changeset
|
3306 |
|
dbcbffb889da
test_findscu_encoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
89
diff
changeset
|
3307 patientName = re.findall('\(0010,0010\).*?\[(.*?)\]', i) |
|
dbcbffb889da
test_findscu_encoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
89
diff
changeset
|
3308 self.assertEqual(1, len(patientName)) |
|
dbcbffb889da
test_findscu_encoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
89
diff
changeset
|
3309 |
|
dbcbffb889da
test_findscu_encoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
89
diff
changeset
|
3310 expected = TEST.encode(ENCODINGS[name][1], 'ignore') |
|
dbcbffb889da
test_findscu_encoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
89
diff
changeset
|
3311 self.assertEqual(expected, patientName[0].strip()) |
|
dbcbffb889da
test_findscu_encoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
89
diff
changeset
|
3312 |
|
dbcbffb889da
test_findscu_encoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
89
diff
changeset
|
3313 |
|
dbcbffb889da
test_findscu_encoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
89
diff
changeset
|
3314 #for master in ENCODINGS: |
|
dbcbffb889da
test_findscu_encoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
89
diff
changeset
|
3315 for master in [ 'Latin1', 'Utf8', 'Cyrillic' ]: # Shortcut to speedup tests |
|
dbcbffb889da
test_findscu_encoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
89
diff
changeset
|
3316 self.assertEqual(master, DoPut(_REMOTE, '/tools/default-encoding', master)) |
|
dbcbffb889da
test_findscu_encoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
89
diff
changeset
|
3317 self.assertEqual(master, DoGet(_REMOTE, '/tools/default-encoding')) |
|
dbcbffb889da
test_findscu_encoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
89
diff
changeset
|
3318 |
|
dbcbffb889da
test_findscu_encoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
89
diff
changeset
|
3319 for name in ENCODINGS: |
|
dbcbffb889da
test_findscu_encoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
89
diff
changeset
|
3320 DropOrthanc(_REMOTE) |
|
dbcbffb889da
test_findscu_encoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
89
diff
changeset
|
3321 UploadInstance(_REMOTE, 'Encodings/Lena-%s.dcm' % ENCODINGS[name][1]) |
|
dbcbffb889da
test_findscu_encoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
89
diff
changeset
|
3322 |
|
dbcbffb889da
test_findscu_encoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
89
diff
changeset
|
3323 i = CallFindScu([ '-k', '0008,0052=STUDY', |
|
dbcbffb889da
test_findscu_encoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
89
diff
changeset
|
3324 '-k', 'PatientID', |
|
dbcbffb889da
test_findscu_encoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
89
diff
changeset
|
3325 '-k', 'SpecificCharacterSet', |
|
dbcbffb889da
test_findscu_encoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
89
diff
changeset
|
3326 '-k', 'PatientName' ]) |
|
dbcbffb889da
test_findscu_encoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
89
diff
changeset
|
3327 i = i.decode(ENCODINGS[master][1]) |
|
dbcbffb889da
test_findscu_encoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
89
diff
changeset
|
3328 |
|
dbcbffb889da
test_findscu_encoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
89
diff
changeset
|
3329 characterSet = re.findall('\(0008,0005\).*?\[(.*?)\]', i) |
|
dbcbffb889da
test_findscu_encoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
89
diff
changeset
|
3330 self.assertEqual(1, len(characterSet)) |
|
dbcbffb889da
test_findscu_encoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
89
diff
changeset
|
3331 self.assertEqual(ENCODINGS[master][0], characterSet[0].strip()) |
|
dbcbffb889da
test_findscu_encoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
89
diff
changeset
|
3332 |
|
dbcbffb889da
test_findscu_encoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
89
diff
changeset
|
3333 patientId = re.findall('\(0010,0020\).*?\[(.*?)\]', i) |
|
dbcbffb889da
test_findscu_encoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
89
diff
changeset
|
3334 self.assertEqual(1, len(patientId)) |
|
dbcbffb889da
test_findscu_encoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
89
diff
changeset
|
3335 self.assertEqual(ENCODINGS[name][1], patientId[0].strip()) |
|
dbcbffb889da
test_findscu_encoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
89
diff
changeset
|
3336 |
|
dbcbffb889da
test_findscu_encoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
89
diff
changeset
|
3337 patientName = re.findall('\(0010,0010\).*?\[(.*?)\]', i) |
|
dbcbffb889da
test_findscu_encoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
89
diff
changeset
|
3338 self.assertEqual(1, len(patientName)) |
|
dbcbffb889da
test_findscu_encoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
89
diff
changeset
|
3339 |
|
dbcbffb889da
test_findscu_encoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
89
diff
changeset
|
3340 tmp = ENCODINGS[name][1] |
|
dbcbffb889da
test_findscu_encoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
89
diff
changeset
|
3341 expected = TEST.encode(tmp, 'ignore').decode(tmp) |
|
dbcbffb889da
test_findscu_encoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
89
diff
changeset
|
3342 tmp = ENCODINGS[master][1] |
|
dbcbffb889da
test_findscu_encoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
89
diff
changeset
|
3343 expected = expected.encode(tmp, 'ignore').decode(tmp) |
|
dbcbffb889da
test_findscu_encoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
89
diff
changeset
|
3344 |
|
dbcbffb889da
test_findscu_encoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
89
diff
changeset
|
3345 self.assertEqual(expected, patientName[0].strip()) |
|
dbcbffb889da
test_findscu_encoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
89
diff
changeset
|
3346 |
|
dbcbffb889da
test_findscu_encoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
89
diff
changeset
|
3347 |
|
dbcbffb889da
test_findscu_encoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
89
diff
changeset
|
3348 a = DoPost(_REMOTE, '/tools/find', { 'Expand' : True, |
|
dbcbffb889da
test_findscu_encoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
89
diff
changeset
|
3349 'Level' : 'Study', |
|
dbcbffb889da
test_findscu_encoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
89
diff
changeset
|
3350 'Query' : { }}) |
|
dbcbffb889da
test_findscu_encoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
89
diff
changeset
|
3351 self.assertEqual(1, len(a)) |
|
dbcbffb889da
test_findscu_encoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
89
diff
changeset
|
3352 |
|
dbcbffb889da
test_findscu_encoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
89
diff
changeset
|
3353 tmp = ENCODINGS[name][1] |
|
dbcbffb889da
test_findscu_encoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
89
diff
changeset
|
3354 self.assertEqual(TEST.encode(tmp, 'ignore').decode(tmp), a[0]["PatientMainDicomTags"]["PatientName"]) |
|
96
272d1229cb49
test reconstruction of tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
95
diff
changeset
|
3355 |
|
272d1229cb49
test reconstruction of tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
95
diff
changeset
|
3356 |
|
272d1229cb49
test reconstruction of tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
95
diff
changeset
|
3357 def test_reconstruct(self): |
|
272d1229cb49
test reconstruction of tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
95
diff
changeset
|
3358 def CompareMainDicomTag(expected, instance, level, tag): |
|
272d1229cb49
test reconstruction of tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
95
diff
changeset
|
3359 self.assertEqual(expected, DoGet(_REMOTE, '/instances/%s/%s' % (instance, level))['MainDicomTags'][tag].strip()) |
|
272d1229cb49
test reconstruction of tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
95
diff
changeset
|
3360 |
|
272d1229cb49
test reconstruction of tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
95
diff
changeset
|
3361 a = UploadInstance(_REMOTE, 'DummyCT.dcm')['ID'] |
|
272d1229cb49
test reconstruction of tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
95
diff
changeset
|
3362 |
|
272d1229cb49
test reconstruction of tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
95
diff
changeset
|
3363 studies = DoGet(_REMOTE, '/studies/') |
|
272d1229cb49
test reconstruction of tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
95
diff
changeset
|
3364 self.assertEqual(1, len(DoGet(_REMOTE, '/patients/'))) |
|
272d1229cb49
test reconstruction of tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
95
diff
changeset
|
3365 self.assertEqual(1, len(studies)) |
|
272d1229cb49
test reconstruction of tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
95
diff
changeset
|
3366 self.assertEqual(1, len(DoGet(_REMOTE, '/series/'))) |
|
272d1229cb49
test reconstruction of tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
95
diff
changeset
|
3367 self.assertEqual(1, len(DoGet(_REMOTE, '/instances/'))) |
|
272d1229cb49
test reconstruction of tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
95
diff
changeset
|
3368 |
|
272d1229cb49
test reconstruction of tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
95
diff
changeset
|
3369 modified = DoPost(_REMOTE, '/studies/%s/modify' % studies[0], { |
|
272d1229cb49
test reconstruction of tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
95
diff
changeset
|
3370 "Replace" : { |
|
272d1229cb49
test reconstruction of tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
95
diff
changeset
|
3371 "StudyDescription" : "hello", |
|
272d1229cb49
test reconstruction of tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
95
diff
changeset
|
3372 "SeriesDescription" : "world", |
|
272d1229cb49
test reconstruction of tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
95
diff
changeset
|
3373 "SOPClassUID" : "test", |
|
272d1229cb49
test reconstruction of tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
95
diff
changeset
|
3374 "SOPInstanceUID" : "myid", |
|
272d1229cb49
test reconstruction of tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
95
diff
changeset
|
3375 }, |
| 119 | 3376 "Keep" : [ "StudyInstanceUID", "SeriesInstanceUID" ], |
| 3377 "Force" : True | |
|
96
272d1229cb49
test reconstruction of tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
95
diff
changeset
|
3378 }) |
|
272d1229cb49
test reconstruction of tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
95
diff
changeset
|
3379 |
|
272d1229cb49
test reconstruction of tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
95
diff
changeset
|
3380 instances = DoGet(_REMOTE, '/instances/') |
|
272d1229cb49
test reconstruction of tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
95
diff
changeset
|
3381 self.assertEqual(1, len(DoGet(_REMOTE, '/patients/'))) |
|
272d1229cb49
test reconstruction of tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
95
diff
changeset
|
3382 self.assertEqual(1, len(DoGet(_REMOTE, '/studies/'))) |
|
272d1229cb49
test reconstruction of tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
95
diff
changeset
|
3383 self.assertEqual(1, len(DoGet(_REMOTE, '/series/'))) |
|
272d1229cb49
test reconstruction of tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
95
diff
changeset
|
3384 self.assertEqual(2, len(instances)) |
|
272d1229cb49
test reconstruction of tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
95
diff
changeset
|
3385 |
|
272d1229cb49
test reconstruction of tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
95
diff
changeset
|
3386 b = instances[0] if instances[1] == a else instances[1] |
|
272d1229cb49
test reconstruction of tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
95
diff
changeset
|
3387 |
|
272d1229cb49
test reconstruction of tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
95
diff
changeset
|
3388 CompareMainDicomTag('Knee (R)', a, 'study', 'StudyDescription') |
|
272d1229cb49
test reconstruction of tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
95
diff
changeset
|
3389 CompareMainDicomTag('AX. FSE PD', a, 'series', 'SeriesDescription') |
|
272d1229cb49
test reconstruction of tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
95
diff
changeset
|
3390 CompareMainDicomTag('1.2.840.113619.2.176.2025.1499492.7040.1171286242.109', a, '', 'SOPInstanceUID') |
|
272d1229cb49
test reconstruction of tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
95
diff
changeset
|
3391 CompareMainDicomTag('myid', b, '', 'SOPInstanceUID') |
|
272d1229cb49
test reconstruction of tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
95
diff
changeset
|
3392 self.assertEqual('1.2.840.10008.5.1.4.1.1.4', DoGet(_REMOTE, '/instances/%s/metadata/SopClassUid' % a).strip()) |
|
272d1229cb49
test reconstruction of tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
95
diff
changeset
|
3393 self.assertEqual('test', DoGet(_REMOTE, '/instances/%s/metadata/SopClassUid' % b).strip()) |
|
272d1229cb49
test reconstruction of tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
95
diff
changeset
|
3394 |
|
272d1229cb49
test reconstruction of tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
95
diff
changeset
|
3395 DoPost(_REMOTE, '/instances/%s/reconstruct' % b, {}) |
|
272d1229cb49
test reconstruction of tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
95
diff
changeset
|
3396 |
|
272d1229cb49
test reconstruction of tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
95
diff
changeset
|
3397 CompareMainDicomTag('hello', a, 'study', 'StudyDescription') |
|
272d1229cb49
test reconstruction of tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
95
diff
changeset
|
3398 CompareMainDicomTag('world', a, 'series', 'SeriesDescription') |
|
272d1229cb49
test reconstruction of tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
95
diff
changeset
|
3399 CompareMainDicomTag('1.2.840.113619.2.176.2025.1499492.7040.1171286242.109', a, '', 'SOPInstanceUID') |
| 102 | 3400 |
| 104 | 3401 def test_httpClient_lua(self): |
| 3402 with open(GetDatabasePath('Lua/HttpClient.lua'), 'r') as f: | |
| 102 | 3403 result = DoPost(_REMOTE, '/tools/execute-script', f.read(), 'application/lua') |
| 3404 | |
| 3405 self.assertIn('OK', result) | |
|
107
fddb35f7289d
test_bitbucket_issue_44
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
104
diff
changeset
|
3406 |
|
fddb35f7289d
test_bitbucket_issue_44
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
104
diff
changeset
|
3407 |
|
fddb35f7289d
test_bitbucket_issue_44
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
104
diff
changeset
|
3408 def test_bitbucket_issue_44(self): |
|
fddb35f7289d
test_bitbucket_issue_44
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
104
diff
changeset
|
3409 # https://bitbucket.org/sjodogne/orthanc/issues/44/bad-interpretation-of-photometric |
|
fddb35f7289d
test_bitbucket_issue_44
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
104
diff
changeset
|
3410 UploadInstance(_REMOTE, 'Issue44/Monochrome1.dcm') |
|
fddb35f7289d
test_bitbucket_issue_44
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
104
diff
changeset
|
3411 UploadInstance(_REMOTE, 'Issue44/Monochrome2.dcm') |
|
fddb35f7289d
test_bitbucket_issue_44
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
104
diff
changeset
|
3412 |
|
fddb35f7289d
test_bitbucket_issue_44
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
104
diff
changeset
|
3413 # dcmcjpeg +ua +eb Monochrome1.dcm Monochrome1-Jpeg.dcm |
|
fddb35f7289d
test_bitbucket_issue_44
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
104
diff
changeset
|
3414 UploadInstance(_REMOTE, 'Issue44/Monochrome1-Jpeg.dcm') |
|
fddb35f7289d
test_bitbucket_issue_44
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
104
diff
changeset
|
3415 |
|
fddb35f7289d
test_bitbucket_issue_44
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
104
diff
changeset
|
3416 # dcmcjpeg +ua Monochrome1.dcm Monochrome1-JpegLS.dcm |
|
fddb35f7289d
test_bitbucket_issue_44
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
104
diff
changeset
|
3417 UploadInstance(_REMOTE, 'Issue44/Monochrome1-JpegLS.dcm') |
|
fddb35f7289d
test_bitbucket_issue_44
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
104
diff
changeset
|
3418 |
|
fddb35f7289d
test_bitbucket_issue_44
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
104
diff
changeset
|
3419 monochrome1 = 'bcdd600a-a6a9c522-5f0a6e84-8657c9f3-b76e59b7' |
|
fddb35f7289d
test_bitbucket_issue_44
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
104
diff
changeset
|
3420 monochrome1_jpeg = '9df82121-208a2da8-0038674a-3d7a773b-b7008cd2' |
|
fddb35f7289d
test_bitbucket_issue_44
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
104
diff
changeset
|
3421 monochrome1_jpegls = '0486d1a2-9165573f-b1976b20-e927b016-6b8d67ab' |
|
fddb35f7289d
test_bitbucket_issue_44
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
104
diff
changeset
|
3422 monochrome2 = 'f00947b7-f61f7164-c93414d1-c6fbda6a-9e92ed20' |
|
fddb35f7289d
test_bitbucket_issue_44
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
104
diff
changeset
|
3423 |
|
fddb35f7289d
test_bitbucket_issue_44
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
104
diff
changeset
|
3424 for i in [ monochrome1, monochrome1_jpeg, monochrome1_jpegls ]: |
|
fddb35f7289d
test_bitbucket_issue_44
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
104
diff
changeset
|
3425 im = GetImage(_REMOTE, '/instances/%s/preview' % i) |
|
fddb35f7289d
test_bitbucket_issue_44
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
104
diff
changeset
|
3426 self.assertEqual("L", im.mode) |
|
fddb35f7289d
test_bitbucket_issue_44
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
104
diff
changeset
|
3427 self.assertEqual(2010, im.size[0]) |
|
fddb35f7289d
test_bitbucket_issue_44
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
104
diff
changeset
|
3428 self.assertEqual(2446, im.size[1]) |
|
fddb35f7289d
test_bitbucket_issue_44
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
104
diff
changeset
|
3429 |
|
fddb35f7289d
test_bitbucket_issue_44
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
104
diff
changeset
|
3430 # This is the chest image, with MONOCHROME1. Raw background is |
|
fddb35f7289d
test_bitbucket_issue_44
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
104
diff
changeset
|
3431 # white (255), should be rendered as black (0) => invert |
|
fddb35f7289d
test_bitbucket_issue_44
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
104
diff
changeset
|
3432 if i == monochrome1_jpeg: |
|
fddb35f7289d
test_bitbucket_issue_44
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
104
diff
changeset
|
3433 # Add some tolerance because of JPEG destructive compression |
|
fddb35f7289d
test_bitbucket_issue_44
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
104
diff
changeset
|
3434 self.assertGreater(10, im.getpixel((0,0))) |
|
fddb35f7289d
test_bitbucket_issue_44
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
104
diff
changeset
|
3435 else: |
|
fddb35f7289d
test_bitbucket_issue_44
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
104
diff
changeset
|
3436 self.assertEqual(0, im.getpixel((0,0))) |
|
fddb35f7289d
test_bitbucket_issue_44
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
104
diff
changeset
|
3437 |
|
fddb35f7289d
test_bitbucket_issue_44
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
104
diff
changeset
|
3438 im = GetImage(_REMOTE, '/instances/%s/preview' % monochrome2) |
|
fddb35f7289d
test_bitbucket_issue_44
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
104
diff
changeset
|
3439 self.assertEqual("L", im.mode) |
|
fddb35f7289d
test_bitbucket_issue_44
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
104
diff
changeset
|
3440 self.assertEqual(1572, im.size[0]) |
|
fddb35f7289d
test_bitbucket_issue_44
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
104
diff
changeset
|
3441 self.assertEqual(2010, im.size[1]) |
|
fddb35f7289d
test_bitbucket_issue_44
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
104
diff
changeset
|
3442 |
|
fddb35f7289d
test_bitbucket_issue_44
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
104
diff
changeset
|
3443 # This is the key image, with MONOCHROME2. Raw background is |
|
fddb35f7289d
test_bitbucket_issue_44
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
104
diff
changeset
|
3444 # white (255), should be rendered as white (255) |
|
fddb35f7289d
test_bitbucket_issue_44
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
104
diff
changeset
|
3445 self.assertEqual(255, im.getpixel((0,0))) |
|
111
7005cdeeb704
test_bitbucket_issue_42
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
107
diff
changeset
|
3446 |
|
7005cdeeb704
test_bitbucket_issue_42
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
107
diff
changeset
|
3447 |
|
7005cdeeb704
test_bitbucket_issue_42
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
107
diff
changeset
|
3448 def test_bitbucket_issue_42(self): |
|
7005cdeeb704
test_bitbucket_issue_42
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
107
diff
changeset
|
3449 # https://bitbucket.org/sjodogne/orthanc/issues/42/fails-to-modify-a-dicom-video-file |
| 123 | 3450 # This test fails on DCMTK 3.6.0, but succeeds in DCMTK 3.6.1 snapshots and DCMTK 3.6.2 |
|
111
7005cdeeb704
test_bitbucket_issue_42
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
107
diff
changeset
|
3451 UploadInstance(_REMOTE, 'Issue42.dcm')['ID'] |
|
7005cdeeb704
test_bitbucket_issue_42
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
107
diff
changeset
|
3452 modified = DoPost(_REMOTE, |
|
7005cdeeb704
test_bitbucket_issue_42
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
107
diff
changeset
|
3453 '/patients/da128605-e040d0c4-310615d2-3475da63-df2d1ef4/modify', |
| 119 | 3454 '{"Replace":{"PatientID":"Hello","PatientName":"Sample patient name"},"Force":true}', |
|
111
7005cdeeb704
test_bitbucket_issue_42
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
107
diff
changeset
|
3455 'application/json') |
|
7005cdeeb704
test_bitbucket_issue_42
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
107
diff
changeset
|
3456 self.assertTrue('PatientID' in modified) |
|
113
3e5934363e76
test_rest_find_limitµ
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
112
diff
changeset
|
3457 |
|
3e5934363e76
test_rest_find_limitµ
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
112
diff
changeset
|
3458 |
|
3e5934363e76
test_rest_find_limitµ
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
112
diff
changeset
|
3459 def test_rest_find_limit(self): |
|
3e5934363e76
test_rest_find_limitµ
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
112
diff
changeset
|
3460 # Check the "Since" and "Limit" parameters in URI "/tools/find" |
|
3e5934363e76
test_rest_find_limitµ
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
112
diff
changeset
|
3461 # Related to issue 53: https://bitbucket.org/sjodogne/orthanc/issues/53 |
|
111
7005cdeeb704
test_bitbucket_issue_42
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
107
diff
changeset
|
3462 |
|
113
3e5934363e76
test_rest_find_limitµ
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
112
diff
changeset
|
3463 # Upload 6 instances |
|
3e5934363e76
test_rest_find_limitµ
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
112
diff
changeset
|
3464 brainix = [] |
|
3e5934363e76
test_rest_find_limitµ
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
112
diff
changeset
|
3465 knee = [] |
|
3e5934363e76
test_rest_find_limitµ
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
112
diff
changeset
|
3466 for i in range(2): |
|
3e5934363e76
test_rest_find_limitµ
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
112
diff
changeset
|
3467 brainix.append(UploadInstance(_REMOTE, 'Brainix/Flair/IM-0001-000%d.dcm' % (i + 1)) ['ID']) |
|
3e5934363e76
test_rest_find_limitµ
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
112
diff
changeset
|
3468 brainix.append(UploadInstance(_REMOTE, 'Brainix/Epi/IM-0001-000%d.dcm' % (i + 1)) ['ID']) |
|
3e5934363e76
test_rest_find_limitµ
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
112
diff
changeset
|
3469 knee.append(UploadInstance(_REMOTE, 'Knee/T1/IM-0001-000%d.dcm' % (i + 1)) ['ID']) |
|
3e5934363e76
test_rest_find_limitµ
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
112
diff
changeset
|
3470 |
|
3e5934363e76
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parents:
112
diff
changeset
|
3471 # Check using BRAINIX |
|
3e5934363e76
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Sebastien Jodogne <s.jodogne@gmail.com>
parents:
112
diff
changeset
|
3472 a = DoPost(_REMOTE, '/tools/find', { 'Level' : 'Instance', |
|
3e5934363e76
test_rest_find_limitµ
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parents:
112
diff
changeset
|
3473 'Query' : { 'PatientName' : 'B*' }, |
|
3e5934363e76
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diff
changeset
|
3474 'Limit' : 10 }) |
|
3e5934363e76
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Sebastien Jodogne <s.jodogne@gmail.com>
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112
diff
changeset
|
3475 self.assertEqual(4, len(a)) |
|
3e5934363e76
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parents:
112
diff
changeset
|
3476 |
|
3e5934363e76
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Sebastien Jodogne <s.jodogne@gmail.com>
parents:
112
diff
changeset
|
3477 a = DoPost(_REMOTE, '/tools/find', { 'Level' : 'Instance', |
|
3e5934363e76
test_rest_find_limitµ
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112
diff
changeset
|
3478 'Query' : { 'PatientName' : 'B*' }, |
|
3e5934363e76
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diff
changeset
|
3479 'Limit' : 4 }) |
|
3e5934363e76
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diff
changeset
|
3480 self.assertEqual(4, len(a)) |
|
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diff
changeset
|
3481 |
|
3e5934363e76
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parents:
112
diff
changeset
|
3482 a = DoPost(_REMOTE, '/tools/find', { 'Level' : 'Instance', |
|
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diff
changeset
|
3483 'Query' : { 'PatientName' : 'B*' }, |
|
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diff
changeset
|
3484 'Since' : 2, |
|
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diff
changeset
|
3485 'Limit' : 4 }) |
|
3e5934363e76
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112
diff
changeset
|
3486 self.assertEqual(2, len(a)) |
|
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parents:
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diff
changeset
|
3487 |
|
3e5934363e76
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parents:
112
diff
changeset
|
3488 a = DoPost(_REMOTE, '/tools/find', { 'Level' : 'Instance', |
|
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diff
changeset
|
3489 'Query' : { 'PatientName' : 'B*' }, |
|
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diff
changeset
|
3490 'Limit' : 3 }) |
|
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diff
changeset
|
3491 self.assertEqual(3, len(a)) |
|
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diff
changeset
|
3492 |
|
3e5934363e76
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diff
changeset
|
3493 b = [] |
|
3e5934363e76
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parents:
112
diff
changeset
|
3494 for i in range(4): |
|
3e5934363e76
test_rest_find_limitµ
Sebastien Jodogne <s.jodogne@gmail.com>
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112
diff
changeset
|
3495 a = DoPost(_REMOTE, '/tools/find', { 'Level' : 'Instance', |
|
3e5934363e76
test_rest_find_limitµ
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112
diff
changeset
|
3496 'Query' : { 'PatientName' : 'B*' }, |
|
3e5934363e76
test_rest_find_limitµ
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
112
diff
changeset
|
3497 'Limit' : 1, |
|
3e5934363e76
test_rest_find_limitµ
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parents:
112
diff
changeset
|
3498 'Since' : i }) |
|
3e5934363e76
test_rest_find_limitµ
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parents:
112
diff
changeset
|
3499 self.assertEqual(1, len(a)) |
|
3e5934363e76
test_rest_find_limitµ
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parents:
112
diff
changeset
|
3500 b.append(a[0]) |
|
3e5934363e76
test_rest_find_limitµ
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
112
diff
changeset
|
3501 |
|
3e5934363e76
test_rest_find_limitµ
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112
diff
changeset
|
3502 # Check whether the two sets are equal through symmetric difference |
|
3e5934363e76
test_rest_find_limitµ
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parents:
112
diff
changeset
|
3503 self.assertEqual(0, len(set(b) ^ set(brainix))) |
|
3e5934363e76
test_rest_find_limitµ
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
112
diff
changeset
|
3504 |
|
3e5934363e76
test_rest_find_limitµ
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parents:
112
diff
changeset
|
3505 # Check using KNEE |
|
3e5934363e76
test_rest_find_limitµ
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parents:
112
diff
changeset
|
3506 a = DoPost(_REMOTE, '/tools/find', { 'Level' : 'Instance', |
|
3e5934363e76
test_rest_find_limitµ
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parents:
112
diff
changeset
|
3507 'Query' : { 'PatientName' : 'K*' }, |
|
3e5934363e76
test_rest_find_limitµ
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
112
diff
changeset
|
3508 'Limit' : 10 }) |
|
3e5934363e76
test_rest_find_limitµ
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
112
diff
changeset
|
3509 self.assertEqual(2, len(a)) |
|
3e5934363e76
test_rest_find_limitµ
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
112
diff
changeset
|
3510 |
|
3e5934363e76
test_rest_find_limitµ
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
112
diff
changeset
|
3511 a = DoPost(_REMOTE, '/tools/find', { 'Level' : 'Instance', |
|
3e5934363e76
test_rest_find_limitµ
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
112
diff
changeset
|
3512 'Query' : { 'PatientName' : 'K*' }, |
|
3e5934363e76
test_rest_find_limitµ
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
112
diff
changeset
|
3513 'Limit' : 2 }) |
|
3e5934363e76
test_rest_find_limitµ
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
112
diff
changeset
|
3514 self.assertEqual(2, len(a)) |
|
3e5934363e76
test_rest_find_limitµ
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
112
diff
changeset
|
3515 |
|
3e5934363e76
test_rest_find_limitµ
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
112
diff
changeset
|
3516 b = [] |
|
3e5934363e76
test_rest_find_limitµ
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
112
diff
changeset
|
3517 for i in range(2): |
|
3e5934363e76
test_rest_find_limitµ
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
112
diff
changeset
|
3518 a = DoPost(_REMOTE, '/tools/find', { 'Level' : 'Instance', |
|
3e5934363e76
test_rest_find_limitµ
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
112
diff
changeset
|
3519 'Query' : { 'PatientName' : 'K*' }, |
|
3e5934363e76
test_rest_find_limitµ
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
112
diff
changeset
|
3520 'Limit' : 1, |
|
3e5934363e76
test_rest_find_limitµ
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
112
diff
changeset
|
3521 'Since' : i }) |
|
3e5934363e76
test_rest_find_limitµ
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
112
diff
changeset
|
3522 self.assertEqual(1, len(a)) |
|
3e5934363e76
test_rest_find_limitµ
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
112
diff
changeset
|
3523 b.append(a[0]) |
|
3e5934363e76
test_rest_find_limitµ
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
112
diff
changeset
|
3524 |
|
3e5934363e76
test_rest_find_limitµ
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
112
diff
changeset
|
3525 self.assertEqual(0, len(set(b) ^ set(knee))) |
|
115
45ebfab035b7
test_bitbucket_issue_46
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
113
diff
changeset
|
3526 |
|
45ebfab035b7
test_bitbucket_issue_46
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
113
diff
changeset
|
3527 |
|
45ebfab035b7
test_bitbucket_issue_46
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
113
diff
changeset
|
3528 def test_bitbucket_issue_46(self): |
|
45ebfab035b7
test_bitbucket_issue_46
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parents:
113
diff
changeset
|
3529 # "PHI remaining after anonymization" |
|
45ebfab035b7
test_bitbucket_issue_46
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parents:
113
diff
changeset
|
3530 # https://bitbucket.org/sjodogne/orthanc/issues/46 |
|
45ebfab035b7
test_bitbucket_issue_46
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parents:
113
diff
changeset
|
3531 |
|
45ebfab035b7
test_bitbucket_issue_46
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
113
diff
changeset
|
3532 def GetAnonymizedTags(study, version): |
|
45ebfab035b7
test_bitbucket_issue_46
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parents:
113
diff
changeset
|
3533 anonymized = DoPost(_REMOTE, '/studies/%s/anonymize' % study, |
|
45ebfab035b7
test_bitbucket_issue_46
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parents:
113
diff
changeset
|
3534 { 'DicomVersion' : version }, |
|
45ebfab035b7
test_bitbucket_issue_46
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
113
diff
changeset
|
3535 'application/json') ['ID'] |
|
45ebfab035b7
test_bitbucket_issue_46
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
113
diff
changeset
|
3536 a = DoGet(_REMOTE, '/studies/%s/instances' % anonymized) |
|
45ebfab035b7
test_bitbucket_issue_46
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parents:
113
diff
changeset
|
3537 self.assertEqual(1, len(a)) |
|
45ebfab035b7
test_bitbucket_issue_46
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
113
diff
changeset
|
3538 |
|
45ebfab035b7
test_bitbucket_issue_46
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parents:
113
diff
changeset
|
3539 instance = a[0]['ID'] |
|
45ebfab035b7
test_bitbucket_issue_46
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
113
diff
changeset
|
3540 |
|
45ebfab035b7
test_bitbucket_issue_46
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parents:
113
diff
changeset
|
3541 return (instance, DoGet(_REMOTE, '/instances/%s/tags' % instance)) |
|
45ebfab035b7
test_bitbucket_issue_46
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
113
diff
changeset
|
3542 |
|
45ebfab035b7
test_bitbucket_issue_46
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
113
diff
changeset
|
3543 UploadInstance(_REMOTE, 'Issue44/Monochrome1.dcm') |
|
45ebfab035b7
test_bitbucket_issue_46
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
113
diff
changeset
|
3544 origStudy = '6068a14b-d4df27af-9ec22145-538772d8-74f228ff' |
|
45ebfab035b7
test_bitbucket_issue_46
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
113
diff
changeset
|
3545 |
|
45ebfab035b7
test_bitbucket_issue_46
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parents:
113
diff
changeset
|
3546 # Add the 0032,1033 (Requesting Service) and the 0010,1060 |
|
45ebfab035b7
test_bitbucket_issue_46
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parents:
113
diff
changeset
|
3547 # (Patient's Mother's Birth Name) tags |
|
45ebfab035b7
test_bitbucket_issue_46
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
113
diff
changeset
|
3548 newStudy = DoPost(_REMOTE, '/studies/%s/modify' % origStudy, |
|
45ebfab035b7
test_bitbucket_issue_46
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
113
diff
changeset
|
3549 '{"Replace":{"0010,1060":"OSIMIS","0032,1033":"MOTHER"}}', |
|
45ebfab035b7
test_bitbucket_issue_46
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
113
diff
changeset
|
3550 'application/json')['ID'] |
|
45ebfab035b7
test_bitbucket_issue_46
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
113
diff
changeset
|
3551 |
|
45ebfab035b7
test_bitbucket_issue_46
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
113
diff
changeset
|
3552 # Use Table E.1-1 from PS 3.15-2008 |
|
45ebfab035b7
test_bitbucket_issue_46
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
113
diff
changeset
|
3553 # https://raw.githubusercontent.com/jodogne/dicom-specification/master/2008/08_15pu.pdf |
|
45ebfab035b7
test_bitbucket_issue_46
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
113
diff
changeset
|
3554 (instance, tags) = GetAnonymizedTags(newStudy, "2008") |
|
45ebfab035b7
test_bitbucket_issue_46
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
113
diff
changeset
|
3555 self.assertTrue('0032,1033' in tags) |
|
45ebfab035b7
test_bitbucket_issue_46
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
113
diff
changeset
|
3556 self.assertTrue('0010,1060' in tags) |
|
45ebfab035b7
test_bitbucket_issue_46
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
113
diff
changeset
|
3557 |
|
45ebfab035b7
test_bitbucket_issue_46
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parents:
113
diff
changeset
|
3558 # Use Table E.1-1 from PS 3.15-2011 (only if Orthanc >= 1.2.1) |
|
45ebfab035b7
test_bitbucket_issue_46
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parents:
113
diff
changeset
|
3559 # https://raw.githubusercontent.com/jodogne/dicom-specification/master/2008/08_15pu.pdf |
|
45ebfab035b7
test_bitbucket_issue_46
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
113
diff
changeset
|
3560 (instance, tags) = GetAnonymizedTags(newStudy, "2017c") |
|
45ebfab035b7
test_bitbucket_issue_46
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
113
diff
changeset
|
3561 self.assertFalse('0032,1033' in tags) |
|
45ebfab035b7
test_bitbucket_issue_46
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
113
diff
changeset
|
3562 self.assertFalse('0010,1060' in tags) |
|
45ebfab035b7
test_bitbucket_issue_46
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
113
diff
changeset
|
3563 |
|
45ebfab035b7
test_bitbucket_issue_46
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
113
diff
changeset
|
3564 t = {} |
|
45ebfab035b7
test_bitbucket_issue_46
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
113
diff
changeset
|
3565 for (key, value) in tags.iteritems(): |
|
45ebfab035b7
test_bitbucket_issue_46
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parents:
113
diff
changeset
|
3566 t[value['Name']] = value['Value'] |
|
45ebfab035b7
test_bitbucket_issue_46
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
113
diff
changeset
|
3567 |
|
45ebfab035b7
test_bitbucket_issue_46
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
113
diff
changeset
|
3568 self.assertEqual('', t['StudyDate']) # Type 1 tag => cleared |
|
45ebfab035b7
test_bitbucket_issue_46
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
113
diff
changeset
|
3569 self.assertEqual('', t['StudyTime']) # Type 1 tag => cleared |
|
45ebfab035b7
test_bitbucket_issue_46
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
113
diff
changeset
|
3570 self.assertEqual('', t['PatientSex']) # Type 1 tag => cleared |
|
45ebfab035b7
test_bitbucket_issue_46
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
113
diff
changeset
|
3571 self.assertFalse('SeriesDate' in t) # Type 3 tag => null |
|
45ebfab035b7
test_bitbucket_issue_46
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
113
diff
changeset
|
3572 self.assertFalse('SeriesTime' in t) # Type 3 tag => null |
|
45ebfab035b7
test_bitbucket_issue_46
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
113
diff
changeset
|
3573 |
|
45ebfab035b7
test_bitbucket_issue_46
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
113
diff
changeset
|
3574 with tempfile.NamedTemporaryFile(delete = True) as f: |
|
45ebfab035b7
test_bitbucket_issue_46
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parents:
113
diff
changeset
|
3575 # Run "dciodvfy" on the anonymized file to be sure it is still valid |
|
45ebfab035b7
test_bitbucket_issue_46
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113
diff
changeset
|
3576 f.write(DoGet(_REMOTE, '/instances/%s/file' % instance)) |
|
45ebfab035b7
test_bitbucket_issue_46
Sebastien Jodogne <s.jodogne@gmail.com>
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diff
changeset
|
3577 f.flush() |
|
45ebfab035b7
test_bitbucket_issue_46
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113
diff
changeset
|
3578 subprocess.check_output([ FindExecutable('dciodvfy'), f.name ], |
|
45ebfab035b7
test_bitbucket_issue_46
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parents:
113
diff
changeset
|
3579 stderr = subprocess.STDOUT).split('\n') |
|
118
a954c535fef6
test_bitbucket_issue_55
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
117
diff
changeset
|
3580 |
|
a954c535fef6
test_bitbucket_issue_55
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
117
diff
changeset
|
3581 |
|
a954c535fef6
test_bitbucket_issue_55
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
117
diff
changeset
|
3582 def test_bitbucket_issue_55(self): |
|
a954c535fef6
test_bitbucket_issue_55
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diff
changeset
|
3583 def Run(modify, query): |
|
a954c535fef6
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diff
changeset
|
3584 self.assertEqual(1, len(DoGet(_REMOTE, '/instances'))) |
|
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test_bitbucket_issue_55
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diff
changeset
|
3585 |
|
a954c535fef6
test_bitbucket_issue_55
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diff
changeset
|
3586 operation = 'modify' if modify else 'anonymize' |
|
a954c535fef6
test_bitbucket_issue_55
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diff
changeset
|
3587 |
|
a954c535fef6
test_bitbucket_issue_55
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diff
changeset
|
3588 self.assertRaises(Exception, lambda: DoPost( |
|
a954c535fef6
test_bitbucket_issue_55
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diff
changeset
|
3589 _REMOTE, '/studies/%s/%s' % (study, operation), query)) |
|
a954c535fef6
test_bitbucket_issue_55
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diff
changeset
|
3590 self.assertEqual(1, len(DoGet(_REMOTE, '/instances'))) |
|
a954c535fef6
test_bitbucket_issue_55
Sebastien Jodogne <s.jodogne@gmail.com>
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diff
changeset
|
3591 |
|
a954c535fef6
test_bitbucket_issue_55
Sebastien Jodogne <s.jodogne@gmail.com>
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117
diff
changeset
|
3592 query["Force"] = True |
|
a954c535fef6
test_bitbucket_issue_55
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diff
changeset
|
3593 a = DoPost(_REMOTE, '/studies/%s/%s' % (study, operation), query)['Path'] |
|
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test_bitbucket_issue_55
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diff
changeset
|
3594 self.assertEqual(2, len(DoGet(_REMOTE, '/instances'))) |
|
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diff
changeset
|
3595 DoDelete(_REMOTE, a) |
|
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diff
changeset
|
3596 |
|
a954c535fef6
test_bitbucket_issue_55
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117
diff
changeset
|
3597 self.assertEqual(1, len(DoGet(_REMOTE, '/instances'))) |
|
a954c535fef6
test_bitbucket_issue_55
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
117
diff
changeset
|
3598 |
|
a954c535fef6
test_bitbucket_issue_55
Sebastien Jodogne <s.jodogne@gmail.com>
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117
diff
changeset
|
3599 UploadInstance(_REMOTE, 'DummyCT.dcm') |
|
a954c535fef6
test_bitbucket_issue_55
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diff
changeset
|
3600 study = 'b9c08539-26f93bde-c81ab0d7-bffaf2cb-a4d0bdd0' |
|
a954c535fef6
test_bitbucket_issue_55
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
117
diff
changeset
|
3601 |
|
a954c535fef6
test_bitbucket_issue_55
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
117
diff
changeset
|
3602 Run(True, { "Replace" : { "StudyInstanceUID" : "world" } }) |
|
a954c535fef6
test_bitbucket_issue_55
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
117
diff
changeset
|
3603 Run(True, { "Replace" : { "SeriesInstanceUID" : "world" } }) |
|
a954c535fef6
test_bitbucket_issue_55
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
117
diff
changeset
|
3604 Run(True, { "Replace" : { "SOPInstanceUID" : "world" } }) |
|
a954c535fef6
test_bitbucket_issue_55
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
117
diff
changeset
|
3605 |
|
a954c535fef6
test_bitbucket_issue_55
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
117
diff
changeset
|
3606 Run(False, { "Keep" : [ "StudyInstanceUID" ]}) |
|
a954c535fef6
test_bitbucket_issue_55
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
117
diff
changeset
|
3607 Run(False, { "Keep" : [ "SeriesInstanceUID" ]}) |
|
a954c535fef6
test_bitbucket_issue_55
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
117
diff
changeset
|
3608 Run(False, { "Keep" : [ "SOPInstanceUID" ]}) |
|
a954c535fef6
test_bitbucket_issue_55
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
117
diff
changeset
|
3609 |
|
a954c535fef6
test_bitbucket_issue_55
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
117
diff
changeset
|
3610 Run(False, { "Replace" : { "StudyInstanceUID" : "world" } }) |
|
a954c535fef6
test_bitbucket_issue_55
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
117
diff
changeset
|
3611 Run(False, { "Replace" : { "SeriesInstanceUID" : "world" } }) |
|
a954c535fef6
test_bitbucket_issue_55
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
117
diff
changeset
|
3612 Run(False, { "Replace" : { "SOPInstanceUID" : "world" } }) |
|
a954c535fef6
test_bitbucket_issue_55
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
117
diff
changeset
|
3613 |
|
120
fce08afe6b2d
test_bitbucket_issue_56
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
119
diff
changeset
|
3614 |
|
fce08afe6b2d
test_bitbucket_issue_56
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
119
diff
changeset
|
3615 def test_bitbucket_issue_56(self): |
|
fce08afe6b2d
test_bitbucket_issue_56
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
119
diff
changeset
|
3616 # Case-insensitive matching over accents. This test assumes |
|
fce08afe6b2d
test_bitbucket_issue_56
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
119
diff
changeset
|
3617 # that the "CaseSensitivePN" configuration option of Orthanc |
|
fce08afe6b2d
test_bitbucket_issue_56
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
119
diff
changeset
|
3618 # is set to "false" (default value). |
|
fce08afe6b2d
test_bitbucket_issue_56
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
119
diff
changeset
|
3619 # https://bitbucket.org/sjodogne/orthanc/issues/56 |
|
fce08afe6b2d
test_bitbucket_issue_56
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
119
diff
changeset
|
3620 |
|
fce08afe6b2d
test_bitbucket_issue_56
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
119
diff
changeset
|
3621 def Check(name, expected, expectedSensitive): |
|
fce08afe6b2d
test_bitbucket_issue_56
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
119
diff
changeset
|
3622 a = CallFindScu([ '-k', '0008,0005=ISO_IR 192', # Use UTF-8 |
|
fce08afe6b2d
test_bitbucket_issue_56
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
119
diff
changeset
|
3623 '-k', '0008,0052=PATIENT', |
|
fce08afe6b2d
test_bitbucket_issue_56
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
119
diff
changeset
|
3624 '-k', 'PatientName=%s' % name ]) |
|
fce08afe6b2d
test_bitbucket_issue_56
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
119
diff
changeset
|
3625 patientNames = re.findall('\(0010,0010\).*?\[(.*?)\]', a) |
|
fce08afe6b2d
test_bitbucket_issue_56
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
119
diff
changeset
|
3626 self.assertEqual(expected, len(patientNames)) |
|
fce08afe6b2d
test_bitbucket_issue_56
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
119
diff
changeset
|
3627 |
|
fce08afe6b2d
test_bitbucket_issue_56
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
119
diff
changeset
|
3628 a = DoPost(_REMOTE, '/tools/find', { 'Level' : 'Patient', |
|
fce08afe6b2d
test_bitbucket_issue_56
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
119
diff
changeset
|
3629 'CaseSensitive' : False, |
|
fce08afe6b2d
test_bitbucket_issue_56
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
119
diff
changeset
|
3630 'Query' : { 'PatientName' : name }}) |
|
fce08afe6b2d
test_bitbucket_issue_56
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
119
diff
changeset
|
3631 self.assertEqual(expected, len(a)) |
|
fce08afe6b2d
test_bitbucket_issue_56
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
119
diff
changeset
|
3632 |
|
fce08afe6b2d
test_bitbucket_issue_56
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
119
diff
changeset
|
3633 a = DoPost(_REMOTE, '/tools/find', { 'Level' : 'Patient', |
|
fce08afe6b2d
test_bitbucket_issue_56
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
119
diff
changeset
|
3634 'CaseSensitive' : True, |
|
fce08afe6b2d
test_bitbucket_issue_56
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
119
diff
changeset
|
3635 'Query' : { 'PatientName' : name }}) |
|
fce08afe6b2d
test_bitbucket_issue_56
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
119
diff
changeset
|
3636 self.assertEqual(expectedSensitive, len(a)) |
|
fce08afe6b2d
test_bitbucket_issue_56
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
119
diff
changeset
|
3637 |
|
fce08afe6b2d
test_bitbucket_issue_56
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
119
diff
changeset
|
3638 UploadInstance(_REMOTE, 'Encodings/Lena-latin1.dcm') |
|
fce08afe6b2d
test_bitbucket_issue_56
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
119
diff
changeset
|
3639 |
|
fce08afe6b2d
test_bitbucket_issue_56
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
119
diff
changeset
|
3640 # WildcardConstraint |
|
fce08afe6b2d
test_bitbucket_issue_56
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
119
diff
changeset
|
3641 Check('TeSt*', 1, 0) |
|
fce08afe6b2d
test_bitbucket_issue_56
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
119
diff
changeset
|
3642 Check('TeSt-a*', 0, 0) |
|
fce08afe6b2d
test_bitbucket_issue_56
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
119
diff
changeset
|
3643 Check('TeSt-É*', 1, 0) |
|
fce08afe6b2d
test_bitbucket_issue_56
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
119
diff
changeset
|
3644 Check('TeSt-é*', 1, 0) |
|
fce08afe6b2d
test_bitbucket_issue_56
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
119
diff
changeset
|
3645 Check('Test-é*', 1, 1) |
|
fce08afe6b2d
test_bitbucket_issue_56
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
119
diff
changeset
|
3646 |
|
fce08afe6b2d
test_bitbucket_issue_56
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
119
diff
changeset
|
3647 # ListConstraint |
|
fce08afe6b2d
test_bitbucket_issue_56
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
119
diff
changeset
|
3648 Check('Test-éüäöò\\nope', 1, 1) |
|
fce08afe6b2d
test_bitbucket_issue_56
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
119
diff
changeset
|
3649 Check('Test-ÉÜÄÖÒ\\nope', 1, 0) |
|
fce08afe6b2d
test_bitbucket_issue_56
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
119
diff
changeset
|
3650 |
|
fce08afe6b2d
test_bitbucket_issue_56
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
119
diff
changeset
|
3651 # ValueConstraint |
|
fce08afe6b2d
test_bitbucket_issue_56
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
119
diff
changeset
|
3652 Check('Test-éüäöò', 1, 1) |
|
fce08afe6b2d
test_bitbucket_issue_56
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
119
diff
changeset
|
3653 Check('Test-ÉÜÄÖÒ', 1, 0) |
|
fce08afe6b2d
test_bitbucket_issue_56
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
119
diff
changeset
|
3654 |
| 125 | 3655 |
| 3656 def test_gbk_alias(self): | |
| 3657 # https://groups.google.com/d/msg/orthanc-users/WMM8LMbjpUc/02-1f_yFCgAJ | |
| 3658 # This test fails on Orthanc <= 1.3.0 | |
| 3659 i = UploadInstance(_REMOTE, '2017-09-19-GBK-Tumashu.dcm')['ID'] | |
| 3660 tags = DoGet(_REMOTE, '/instances/%s/tags?simplify' % i) | |
| 3661 self.assertEqual(tags['PatientName'], u'徐浩凯') | |
| 3662 self.assertEqual(tags['InstitutionName'], u'灌云县疾病预防控制中心') | |
| 126 | 3663 |
| 3664 | |
| 3665 def test_long_tag(self): | |
| 3666 i = UploadInstance(_REMOTE, 'DummyCTWithLongTag.dcm')['ID'] | |
| 3667 series = 'f2635388-f01d497a-15f7c06b-ad7dba06-c4c599fe' | |
| 3668 | |
| 3669 tags = DoGet(_REMOTE, '/instances/%s/tags' % i) | |
| 3670 self.assertTrue('0018,1020' in tags) | |
| 3671 self.assertEqual('SoftwareVersions', tags['0018,1020']['Name']) | |
| 3672 self.assertEqual('TooLong', tags['0018,1020']['Type']) | |
| 3673 self.assertEqual(None, tags['0018,1020']['Value']) | |
| 3674 | |
| 3675 tags = DoGet(_REMOTE, '/instances/%s/tags?ignore-length=0018-1020' % i) | |
| 3676 self.assertTrue('0018,1020' in tags) | |
| 3677 self.assertEqual('SoftwareVersions', tags['0018,1020']['Name']) | |
| 3678 self.assertEqual('String', tags['0018,1020']['Type']) | |
| 3679 self.assertTrue(tags['0018,1020']['Value'].startswith('Lorem ipsum dolor sit amet')) | |
| 3680 | |
| 3681 tags = DoGet(_REMOTE, '/instances/%s/tags?simplify' % i) | |
| 3682 self.assertTrue('SoftwareVersions' in tags) | |
| 3683 self.assertEqual(None, tags['SoftwareVersions']) | |
| 3684 self.assertTrue('HeartRate' in tags) | |
| 3685 self.assertEqual(474, int(tags['HeartRate'])) | |
| 3686 | |
| 3687 tags = DoGet(_REMOTE, '/instances/%s/simplified-tags' % i) | |
| 3688 self.assertTrue('SoftwareVersions' in tags) | |
| 3689 self.assertEqual(None, tags['SoftwareVersions']) | |
| 3690 | |
| 3691 tags = DoGet(_REMOTE, '/instances/%s/tags?simplify&ignore-length=0018-1020' % i) | |
| 3692 self.assertTrue('SoftwareVersions' in tags) | |
| 3693 self.assertTrue(tags['SoftwareVersions'].startswith('Lorem ipsum dolor sit amet')) | |
| 3694 | |
| 3695 tags = DoGet(_REMOTE, '/instances/%s/tags?simplify&ignore-length=SoftwareVersions' % i) | |
| 3696 self.assertTrue('SoftwareVersions' in tags) | |
| 3697 self.assertTrue(tags['SoftwareVersions'].startswith('Lorem ipsum dolor sit amet')) | |
| 3698 | |
| 3699 tags = DoGet(_REMOTE, '/series/%s/instances-tags' % series) | |
| 3700 self.assertEqual(1, len(tags)) | |
| 3701 self.assertTrue(i in tags.keys()) | |
| 3702 self.assertTrue('0018,1020' in tags[i]) | |
| 3703 self.assertEqual('TooLong', tags[i]['0018,1020']['Type']) | |
| 3704 | |
| 3705 tags = DoGet(_REMOTE, '/series/%s/instances-tags?ignore-length=SoftwareVersions' % series) | |
| 3706 self.assertEqual(1, len(tags)) | |
| 3707 self.assertTrue(i in tags.keys()) | |
| 3708 self.assertTrue('0018,1020' in tags[i]) | |
| 3709 self.assertEqual('String', tags[i]['0018,1020']['Type']) | |
| 3710 self.assertTrue(tags[i]['0018,1020']['Value'].startswith('Lorem ipsum dolor sit amet')) | |
| 3711 | |
|
127
1eea4d3a1ba9
test_extended_media
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
126
diff
changeset
|
3712 |
|
1eea4d3a1ba9
test_extended_media
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
126
diff
changeset
|
3713 def test_extended_media(self): |
|
1eea4d3a1ba9
test_extended_media
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
126
diff
changeset
|
3714 UploadInstance(_REMOTE, 'Knee/T1/IM-0001-0001.dcm') |
|
1eea4d3a1ba9
test_extended_media
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
126
diff
changeset
|
3715 |
|
1eea4d3a1ba9
test_extended_media
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
126
diff
changeset
|
3716 z = GetArchive(_REMOTE, '/patients/%s/media?extended' % DoGet(_REMOTE, '/patients')[0]) |
|
1eea4d3a1ba9
test_extended_media
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
126
diff
changeset
|
3717 self.assertEqual(2, len(z.namelist())) |
|
1eea4d3a1ba9
test_extended_media
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
126
diff
changeset
|
3718 self.assertTrue('IMAGES/IM0' in z.namelist()) |
|
1eea4d3a1ba9
test_extended_media
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
126
diff
changeset
|
3719 self.assertTrue('DICOMDIR' in z.namelist()) |
|
1eea4d3a1ba9
test_extended_media
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
126
diff
changeset
|
3720 |
|
1eea4d3a1ba9
test_extended_media
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
126
diff
changeset
|
3721 try: |
|
1eea4d3a1ba9
test_extended_media
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
126
diff
changeset
|
3722 os.remove('/tmp/DICOMDIR') |
|
1eea4d3a1ba9
test_extended_media
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
126
diff
changeset
|
3723 except: |
|
1eea4d3a1ba9
test_extended_media
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
126
diff
changeset
|
3724 # The file does not exist |
|
1eea4d3a1ba9
test_extended_media
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
126
diff
changeset
|
3725 pass |
|
1eea4d3a1ba9
test_extended_media
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
126
diff
changeset
|
3726 |
|
1eea4d3a1ba9
test_extended_media
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
126
diff
changeset
|
3727 z.extract('DICOMDIR', '/tmp') |
|
1eea4d3a1ba9
test_extended_media
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
126
diff
changeset
|
3728 a = subprocess.check_output([ FindExecutable('dciodvfy'), '/tmp/DICOMDIR' ], |
|
1eea4d3a1ba9
test_extended_media
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
126
diff
changeset
|
3729 stderr = subprocess.STDOUT).split('\n') |
|
1eea4d3a1ba9
test_extended_media
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
126
diff
changeset
|
3730 self.assertEqual(5, len(a)) |
|
1eea4d3a1ba9
test_extended_media
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
126
diff
changeset
|
3731 self.assertTrue(a[0].startswith('Warning')) |
|
1eea4d3a1ba9
test_extended_media
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
126
diff
changeset
|
3732 self.assertEqual('BasicDirectory', a[1]) |
|
1eea4d3a1ba9
test_extended_media
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
126
diff
changeset
|
3733 self.assertTrue('not present in standard DICOM IOD' in a[2]) |
|
1eea4d3a1ba9
test_extended_media
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
126
diff
changeset
|
3734 self.assertTrue('not present in standard DICOM IOD' in a[3]) |
|
1eea4d3a1ba9
test_extended_media
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
126
diff
changeset
|
3735 self.assertEqual('', a[4]) |
|
1eea4d3a1ba9
test_extended_media
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
126
diff
changeset
|
3736 |
|
1eea4d3a1ba9
test_extended_media
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
126
diff
changeset
|
3737 a = subprocess.check_output([ FindExecutable('dcentvfy'), '/tmp/DICOMDIR' ], |
|
1eea4d3a1ba9
test_extended_media
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
126
diff
changeset
|
3738 stderr = subprocess.STDOUT).split('\n') |
|
1eea4d3a1ba9
test_extended_media
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
126
diff
changeset
|
3739 self.assertEqual(1, len(a)) |
|
1eea4d3a1ba9
test_extended_media
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
126
diff
changeset
|
3740 self.assertEqual('', a[0]) |
|
1eea4d3a1ba9
test_extended_media
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
126
diff
changeset
|
3741 |
|
1eea4d3a1ba9
test_extended_media
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
126
diff
changeset
|
3742 a = subprocess.check_output([ FindExecutable('dcm2xml'), '/tmp/DICOMDIR' ]) |
|
1eea4d3a1ba9
test_extended_media
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
126
diff
changeset
|
3743 self.assertTrue(re.search('1.3.46.670589.11.17521.5.0.3124.2008081908590448738', a) != None) |
|
1eea4d3a1ba9
test_extended_media
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
126
diff
changeset
|
3744 |
|
1eea4d3a1ba9
test_extended_media
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
126
diff
changeset
|
3745 # Check the presence of the series description (extended tag) |
|
1eea4d3a1ba9
test_extended_media
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
126
diff
changeset
|
3746 self.assertTrue(re.search('T1W_aTSE', a) != None) |
|
1eea4d3a1ba9
test_extended_media
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
126
diff
changeset
|
3747 |
|
1eea4d3a1ba9
test_extended_media
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
126
diff
changeset
|
3748 os.remove('/tmp/DICOMDIR') |
|
1eea4d3a1ba9
test_extended_media
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
126
diff
changeset
|
3749 |
|
1eea4d3a1ba9
test_extended_media
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
126
diff
changeset
|
3750 |
|
132
149144d854bb
Orthanc.test_anonymize_relationships_1/2
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
130
diff
changeset
|
3751 def test_anonymize_relationships_1(self): |
|
133
f0d4c4707e64
test_anonymize_relationships_3
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
132
diff
changeset
|
3752 UploadInstance(_REMOTE, 'Knee/T1/IM-0001-0001.dcm') |
|
f0d4c4707e64
test_anonymize_relationships_3
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
132
diff
changeset
|
3753 UploadInstance(_REMOTE, 'Knee/T1/IM-0001-0002.dcm') |
|
132
149144d854bb
Orthanc.test_anonymize_relationships_1/2
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
130
diff
changeset
|
3754 study = '0a9b3153-2512774b-2d9580de-1fc3dcf6-3bd83918' |
|
149144d854bb
Orthanc.test_anonymize_relationships_1/2
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
130
diff
changeset
|
3755 |
|
149144d854bb
Orthanc.test_anonymize_relationships_1/2
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
130
diff
changeset
|
3756 anonymized = DoPost(_REMOTE, '/studies/%s/anonymize' % study, |
|
149144d854bb
Orthanc.test_anonymize_relationships_1/2
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
130
diff
changeset
|
3757 '{}', |
|
149144d854bb
Orthanc.test_anonymize_relationships_1/2
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
130
diff
changeset
|
3758 'application/json')['ID'] |
|
149144d854bb
Orthanc.test_anonymize_relationships_1/2
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
130
diff
changeset
|
3759 |
|
149144d854bb
Orthanc.test_anonymize_relationships_1/2
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
130
diff
changeset
|
3760 a = DoGet(_REMOTE, '/studies/%s/instances' % study) |
|
149144d854bb
Orthanc.test_anonymize_relationships_1/2
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
130
diff
changeset
|
3761 self.assertEqual(2, len(a)) |
|
149144d854bb
Orthanc.test_anonymize_relationships_1/2
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
130
diff
changeset
|
3762 a1 = a[0]['ID'] |
|
149144d854bb
Orthanc.test_anonymize_relationships_1/2
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
130
diff
changeset
|
3763 a2 = a[1]['ID'] |
|
149144d854bb
Orthanc.test_anonymize_relationships_1/2
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
130
diff
changeset
|
3764 |
|
149144d854bb
Orthanc.test_anonymize_relationships_1/2
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
130
diff
changeset
|
3765 b = DoGet(_REMOTE, '/studies/%s/instances' % anonymized) |
|
149144d854bb
Orthanc.test_anonymize_relationships_1/2
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
130
diff
changeset
|
3766 self.assertEqual(2, len(b)) |
|
149144d854bb
Orthanc.test_anonymize_relationships_1/2
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
130
diff
changeset
|
3767 b1 = b[0]['ID'] |
|
149144d854bb
Orthanc.test_anonymize_relationships_1/2
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
130
diff
changeset
|
3768 b2 = b[1]['ID'] |
|
149144d854bb
Orthanc.test_anonymize_relationships_1/2
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
130
diff
changeset
|
3769 |
|
149144d854bb
Orthanc.test_anonymize_relationships_1/2
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
130
diff
changeset
|
3770 SEQUENCE = '/instances/%s/content/ReferencedImageSequence' |
|
149144d854bb
Orthanc.test_anonymize_relationships_1/2
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
130
diff
changeset
|
3771 SOP = '/instances/%s/content/ReferencedImageSequence/%d/ReferencedSOPInstanceUID' |
|
149144d854bb
Orthanc.test_anonymize_relationships_1/2
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
130
diff
changeset
|
3772 CLASS = '/instances/%s/content/ReferencedImageSequence/%d/ReferencedSOPClassUID' |
|
149144d854bb
Orthanc.test_anonymize_relationships_1/2
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
130
diff
changeset
|
3773 FRAME = '/instances/%s/content/FrameOfReferenceUID' |
|
149144d854bb
Orthanc.test_anonymize_relationships_1/2
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
130
diff
changeset
|
3774 |
|
149144d854bb
Orthanc.test_anonymize_relationships_1/2
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
130
diff
changeset
|
3775 self.assertEqual(DoGet(_REMOTE, FRAME % a1), |
|
149144d854bb
Orthanc.test_anonymize_relationships_1/2
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
130
diff
changeset
|
3776 DoGet(_REMOTE, FRAME % a2)) |
|
149144d854bb
Orthanc.test_anonymize_relationships_1/2
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
130
diff
changeset
|
3777 self.assertEqual(DoGet(_REMOTE, FRAME % b1), |
|
149144d854bb
Orthanc.test_anonymize_relationships_1/2
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
130
diff
changeset
|
3778 DoGet(_REMOTE, FRAME % b2)) |
|
149144d854bb
Orthanc.test_anonymize_relationships_1/2
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
130
diff
changeset
|
3779 self.assertNotEqual(DoGet(_REMOTE, FRAME % a1), |
|
149144d854bb
Orthanc.test_anonymize_relationships_1/2
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
130
diff
changeset
|
3780 DoGet(_REMOTE, FRAME % b1)) |
|
149144d854bb
Orthanc.test_anonymize_relationships_1/2
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
130
diff
changeset
|
3781 self.assertNotEqual(DoGet(_REMOTE, FRAME % a2), |
|
149144d854bb
Orthanc.test_anonymize_relationships_1/2
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
130
diff
changeset
|
3782 DoGet(_REMOTE, FRAME % b2)) |
|
149144d854bb
Orthanc.test_anonymize_relationships_1/2
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
130
diff
changeset
|
3783 |
|
149144d854bb
Orthanc.test_anonymize_relationships_1/2
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
130
diff
changeset
|
3784 self.assertEqual(3, len(DoGet(_REMOTE, SEQUENCE % a1))) |
|
149144d854bb
Orthanc.test_anonymize_relationships_1/2
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
130
diff
changeset
|
3785 self.assertEqual(3, len(DoGet(_REMOTE, SEQUENCE % a2))) |
|
149144d854bb
Orthanc.test_anonymize_relationships_1/2
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
130
diff
changeset
|
3786 self.assertEqual(3, len(DoGet(_REMOTE, SEQUENCE % b1))) |
|
149144d854bb
Orthanc.test_anonymize_relationships_1/2
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
130
diff
changeset
|
3787 self.assertEqual(3, len(DoGet(_REMOTE, SEQUENCE % b2))) |
|
149144d854bb
Orthanc.test_anonymize_relationships_1/2
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
130
diff
changeset
|
3788 |
|
149144d854bb
Orthanc.test_anonymize_relationships_1/2
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
130
diff
changeset
|
3789 for i in range(3): |
|
149144d854bb
Orthanc.test_anonymize_relationships_1/2
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
130
diff
changeset
|
3790 self.assertEqual(DoGet(_REMOTE, SOP % (a1, i)), |
|
149144d854bb
Orthanc.test_anonymize_relationships_1/2
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
130
diff
changeset
|
3791 DoGet(_REMOTE, SOP % (a2, i))) |
|
149144d854bb
Orthanc.test_anonymize_relationships_1/2
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
130
diff
changeset
|
3792 self.assertEqual(DoGet(_REMOTE, SOP % (b1, i)), |
|
149144d854bb
Orthanc.test_anonymize_relationships_1/2
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
130
diff
changeset
|
3793 DoGet(_REMOTE, SOP % (b2, i))) |
|
149144d854bb
Orthanc.test_anonymize_relationships_1/2
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
130
diff
changeset
|
3794 self.assertNotEqual(DoGet(_REMOTE, SOP % (a1, i)), |
|
149144d854bb
Orthanc.test_anonymize_relationships_1/2
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
130
diff
changeset
|
3795 DoGet(_REMOTE, SOP % (b1, i))) |
|
149144d854bb
Orthanc.test_anonymize_relationships_1/2
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
130
diff
changeset
|
3796 self.assertNotEqual(DoGet(_REMOTE, SOP % (a2, i)), |
|
149144d854bb
Orthanc.test_anonymize_relationships_1/2
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
130
diff
changeset
|
3797 DoGet(_REMOTE, SOP % (b2, i))) |
|
149144d854bb
Orthanc.test_anonymize_relationships_1/2
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
130
diff
changeset
|
3798 self.assertEqual(DoGet(_REMOTE, CLASS % (a1, i)), |
|
149144d854bb
Orthanc.test_anonymize_relationships_1/2
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
130
diff
changeset
|
3799 DoGet(_REMOTE, CLASS % (b1, i))) |
|
149144d854bb
Orthanc.test_anonymize_relationships_1/2
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
130
diff
changeset
|
3800 self.assertEqual(DoGet(_REMOTE, CLASS % (a2, i)), |
|
149144d854bb
Orthanc.test_anonymize_relationships_1/2
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
130
diff
changeset
|
3801 DoGet(_REMOTE, CLASS % (b2, i))) |
|
149144d854bb
Orthanc.test_anonymize_relationships_1/2
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
130
diff
changeset
|
3802 |
|
149144d854bb
Orthanc.test_anonymize_relationships_1/2
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
130
diff
changeset
|
3803 |
|
149144d854bb
Orthanc.test_anonymize_relationships_1/2
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
130
diff
changeset
|
3804 def test_anonymize_relationships_2(self): |
|
133
f0d4c4707e64
test_anonymize_relationships_3
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
132
diff
changeset
|
3805 UploadInstance(_REMOTE, 'Comunix/Ct/IM-0001-0001.dcm') |
|
f0d4c4707e64
test_anonymize_relationships_3
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
132
diff
changeset
|
3806 UploadInstance(_REMOTE, 'Comunix/Ct/IM-0001-0002.dcm') |
|
132
149144d854bb
Orthanc.test_anonymize_relationships_1/2
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
130
diff
changeset
|
3807 study = '6c65289b-db2fcb71-7eaf73f4-8e12470c-a4d6d7cf' |
|
149144d854bb
Orthanc.test_anonymize_relationships_1/2
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
130
diff
changeset
|
3808 |
|
149144d854bb
Orthanc.test_anonymize_relationships_1/2
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
130
diff
changeset
|
3809 anonymized = DoPost(_REMOTE, '/studies/%s/anonymize' % study, |
|
149144d854bb
Orthanc.test_anonymize_relationships_1/2
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
130
diff
changeset
|
3810 '{}', |
|
149144d854bb
Orthanc.test_anonymize_relationships_1/2
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
130
diff
changeset
|
3811 'application/json')['ID'] |
|
149144d854bb
Orthanc.test_anonymize_relationships_1/2
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
130
diff
changeset
|
3812 |
|
149144d854bb
Orthanc.test_anonymize_relationships_1/2
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
130
diff
changeset
|
3813 a = DoGet(_REMOTE, '/studies/%s/instances' % study) |
|
149144d854bb
Orthanc.test_anonymize_relationships_1/2
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
130
diff
changeset
|
3814 self.assertEqual(2, len(a)) |
|
149144d854bb
Orthanc.test_anonymize_relationships_1/2
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
130
diff
changeset
|
3815 a1 = a[0]['ID'] |
|
149144d854bb
Orthanc.test_anonymize_relationships_1/2
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
130
diff
changeset
|
3816 a2 = a[1]['ID'] |
|
149144d854bb
Orthanc.test_anonymize_relationships_1/2
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
130
diff
changeset
|
3817 |
|
149144d854bb
Orthanc.test_anonymize_relationships_1/2
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
130
diff
changeset
|
3818 b = DoGet(_REMOTE, '/studies/%s/instances' % anonymized) |
|
149144d854bb
Orthanc.test_anonymize_relationships_1/2
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
130
diff
changeset
|
3819 self.assertEqual(2, len(b)) |
|
149144d854bb
Orthanc.test_anonymize_relationships_1/2
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
130
diff
changeset
|
3820 b1 = b[0]['ID'] |
|
149144d854bb
Orthanc.test_anonymize_relationships_1/2
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
130
diff
changeset
|
3821 b2 = b[1]['ID'] |
|
149144d854bb
Orthanc.test_anonymize_relationships_1/2
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
130
diff
changeset
|
3822 |
|
149144d854bb
Orthanc.test_anonymize_relationships_1/2
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
130
diff
changeset
|
3823 SEQUENCE = '/instances/%s/content/SourceImageSequence' |
|
149144d854bb
Orthanc.test_anonymize_relationships_1/2
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
130
diff
changeset
|
3824 SOP = '/instances/%s/content/SourceImageSequence/%d/ReferencedSOPInstanceUID' |
|
149144d854bb
Orthanc.test_anonymize_relationships_1/2
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
130
diff
changeset
|
3825 CLASS = '/instances/%s/content/SourceImageSequence/%d/ReferencedSOPClassUID' |
|
149144d854bb
Orthanc.test_anonymize_relationships_1/2
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
130
diff
changeset
|
3826 |
|
149144d854bb
Orthanc.test_anonymize_relationships_1/2
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
130
diff
changeset
|
3827 self.assertEqual(1, len(DoGet(_REMOTE, SEQUENCE % a1))) |
|
149144d854bb
Orthanc.test_anonymize_relationships_1/2
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
130
diff
changeset
|
3828 self.assertEqual(1, len(DoGet(_REMOTE, SEQUENCE % a2))) |
|
149144d854bb
Orthanc.test_anonymize_relationships_1/2
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
130
diff
changeset
|
3829 self.assertEqual(1, len(DoGet(_REMOTE, SEQUENCE % b1))) |
|
149144d854bb
Orthanc.test_anonymize_relationships_1/2
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
130
diff
changeset
|
3830 self.assertEqual(1, len(DoGet(_REMOTE, SEQUENCE % b2))) |
|
149144d854bb
Orthanc.test_anonymize_relationships_1/2
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
130
diff
changeset
|
3831 self.assertEqual(DoGet(_REMOTE, SOP % (a1, 0)), |
|
149144d854bb
Orthanc.test_anonymize_relationships_1/2
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
130
diff
changeset
|
3832 DoGet(_REMOTE, SOP % (a2, 0))) |
|
149144d854bb
Orthanc.test_anonymize_relationships_1/2
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
130
diff
changeset
|
3833 self.assertEqual(DoGet(_REMOTE, SOP % (b1, 0)), |
|
149144d854bb
Orthanc.test_anonymize_relationships_1/2
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
130
diff
changeset
|
3834 DoGet(_REMOTE, SOP % (b2, 0))) |
|
149144d854bb
Orthanc.test_anonymize_relationships_1/2
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
130
diff
changeset
|
3835 self.assertNotEqual(DoGet(_REMOTE, SOP % (a1, 0)), |
|
149144d854bb
Orthanc.test_anonymize_relationships_1/2
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
130
diff
changeset
|
3836 DoGet(_REMOTE, SOP % (b1, 0))) |
|
149144d854bb
Orthanc.test_anonymize_relationships_1/2
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
130
diff
changeset
|
3837 self.assertNotEqual(DoGet(_REMOTE, SOP % (a2, 0)), |
|
149144d854bb
Orthanc.test_anonymize_relationships_1/2
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
130
diff
changeset
|
3838 DoGet(_REMOTE, SOP % (b2, 0))) |
|
149144d854bb
Orthanc.test_anonymize_relationships_1/2
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
130
diff
changeset
|
3839 self.assertEqual(DoGet(_REMOTE, CLASS % (a1, 0)), |
|
149144d854bb
Orthanc.test_anonymize_relationships_1/2
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
130
diff
changeset
|
3840 DoGet(_REMOTE, CLASS % (b1, 0))) |
|
149144d854bb
Orthanc.test_anonymize_relationships_1/2
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
130
diff
changeset
|
3841 self.assertEqual(DoGet(_REMOTE, CLASS % (a2, 0)), |
|
149144d854bb
Orthanc.test_anonymize_relationships_1/2
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
130
diff
changeset
|
3842 DoGet(_REMOTE, CLASS % (b2, 0))) |
|
133
f0d4c4707e64
test_anonymize_relationships_3
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
132
diff
changeset
|
3843 |
|
f0d4c4707e64
test_anonymize_relationships_3
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
132
diff
changeset
|
3844 |
|
f0d4c4707e64
test_anonymize_relationships_3
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
132
diff
changeset
|
3845 def test_anonymize_relationships_3(self): |
|
f0d4c4707e64
test_anonymize_relationships_3
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
132
diff
changeset
|
3846 sr1 = UploadInstance(_REMOTE, 'HierarchicalAnonymization/StructuredReports/IM0')['ID'] |
|
f0d4c4707e64
test_anonymize_relationships_3
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
132
diff
changeset
|
3847 mr1 = UploadInstance(_REMOTE, 'HierarchicalAnonymization/StructuredReports/IM631')['ID'] |
|
f0d4c4707e64
test_anonymize_relationships_3
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
132
diff
changeset
|
3848 study = 'ef351eb2-c1147229-062736b8-35a151e3-e32d526b' |
|
f0d4c4707e64
test_anonymize_relationships_3
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
132
diff
changeset
|
3849 |
|
f0d4c4707e64
test_anonymize_relationships_3
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
132
diff
changeset
|
3850 anonymized = DoPost(_REMOTE, '/studies/%s/anonymize' % study, |
|
f0d4c4707e64
test_anonymize_relationships_3
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
132
diff
changeset
|
3851 { "Keep" : [ "ContentSequence" ] }) ['ID'] |
|
f0d4c4707e64
test_anonymize_relationships_3
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
132
diff
changeset
|
3852 |
|
f0d4c4707e64
test_anonymize_relationships_3
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
132
diff
changeset
|
3853 a = DoGet(_REMOTE, '/studies/%s/instances' % anonymized) |
|
f0d4c4707e64
test_anonymize_relationships_3
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
132
diff
changeset
|
3854 self.assertEqual(2, len(a)) |
|
f0d4c4707e64
test_anonymize_relationships_3
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
132
diff
changeset
|
3855 |
|
f0d4c4707e64
test_anonymize_relationships_3
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
132
diff
changeset
|
3856 if DoGet(_REMOTE, '/instances/%s/content/Modality' % a[0]['ID']) == 'SR': |
|
f0d4c4707e64
test_anonymize_relationships_3
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
132
diff
changeset
|
3857 sr2 = a[0]['ID'] |
|
f0d4c4707e64
test_anonymize_relationships_3
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
132
diff
changeset
|
3858 mr2 = a[1]['ID'] |
|
f0d4c4707e64
test_anonymize_relationships_3
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
132
diff
changeset
|
3859 else: |
|
f0d4c4707e64
test_anonymize_relationships_3
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
132
diff
changeset
|
3860 sr2 = a[1]['ID'] |
|
f0d4c4707e64
test_anonymize_relationships_3
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
132
diff
changeset
|
3861 mr2 = a[0]['ID'] |
|
f0d4c4707e64
test_anonymize_relationships_3
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
132
diff
changeset
|
3862 |
|
f0d4c4707e64
test_anonymize_relationships_3
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
132
diff
changeset
|
3863 self.assertEqual(DoGet(_REMOTE, '/instances/%s/content/Modality' % sr1), |
|
f0d4c4707e64
test_anonymize_relationships_3
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
132
diff
changeset
|
3864 DoGet(_REMOTE, '/instances/%s/content/Modality' % sr2)) |
|
f0d4c4707e64
test_anonymize_relationships_3
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
132
diff
changeset
|
3865 self.assertEqual(DoGet(_REMOTE, '/instances/%s/content/Modality' % mr1), |
|
f0d4c4707e64
test_anonymize_relationships_3
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
132
diff
changeset
|
3866 DoGet(_REMOTE, '/instances/%s/content/Modality' % mr2)) |
|
f0d4c4707e64
test_anonymize_relationships_3
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
132
diff
changeset
|
3867 |
|
f0d4c4707e64
test_anonymize_relationships_3
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
132
diff
changeset
|
3868 mrUid1 = DoGet(_REMOTE, '/instances/%s' % mr1)['MainDicomTags']['SOPInstanceUID'] |
|
f0d4c4707e64
test_anonymize_relationships_3
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
132
diff
changeset
|
3869 mrUid2 = DoGet(_REMOTE, '/instances/%s' % mr2)['MainDicomTags']['SOPInstanceUID'] |
|
f0d4c4707e64
test_anonymize_relationships_3
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
132
diff
changeset
|
3870 mrSeries1 = DoGet(_REMOTE, '/instances/%s/content/SeriesInstanceUID' % mr1).strip('\x00') |
|
f0d4c4707e64
test_anonymize_relationships_3
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
132
diff
changeset
|
3871 mrSeries2 = DoGet(_REMOTE, '/instances/%s/content/SeriesInstanceUID' % mr2).strip('\x00') |
|
f0d4c4707e64
test_anonymize_relationships_3
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
132
diff
changeset
|
3872 mrStudy1 = DoGet(_REMOTE, '/instances/%s/content/StudyInstanceUID' % mr1).strip('\x00') |
|
f0d4c4707e64
test_anonymize_relationships_3
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
132
diff
changeset
|
3873 mrStudy2 = DoGet(_REMOTE, '/instances/%s/content/StudyInstanceUID' % mr2).strip('\x00') |
|
f0d4c4707e64
test_anonymize_relationships_3
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
132
diff
changeset
|
3874 |
|
f0d4c4707e64
test_anonymize_relationships_3
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
132
diff
changeset
|
3875 PATH1 = '/instances/%s/content/CurrentRequestedProcedureEvidenceSequence' |
|
f0d4c4707e64
test_anonymize_relationships_3
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
132
diff
changeset
|
3876 PATH2 = PATH1 + '/0/ReferencedSeriesSequence' |
|
f0d4c4707e64
test_anonymize_relationships_3
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
132
diff
changeset
|
3877 PATH3 = PATH2 + '/0/ReferencedSOPSequence' |
|
f0d4c4707e64
test_anonymize_relationships_3
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
132
diff
changeset
|
3878 PATH4 = PATH3 + '/0/ReferencedSOPInstanceUID' |
|
f0d4c4707e64
test_anonymize_relationships_3
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
132
diff
changeset
|
3879 PATH5 = PATH3 + '/0/ReferencedSOPClassUID' |
|
f0d4c4707e64
test_anonymize_relationships_3
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
132
diff
changeset
|
3880 |
|
f0d4c4707e64
test_anonymize_relationships_3
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
132
diff
changeset
|
3881 self.assertEqual(1, len(DoGet(_REMOTE, PATH1 % sr1))) |
|
f0d4c4707e64
test_anonymize_relationships_3
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
132
diff
changeset
|
3882 self.assertEqual(1, len(DoGet(_REMOTE, PATH2 % sr1))) |
|
f0d4c4707e64
test_anonymize_relationships_3
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
132
diff
changeset
|
3883 self.assertEqual(1, len(DoGet(_REMOTE, PATH3 % sr1))) |
|
f0d4c4707e64
test_anonymize_relationships_3
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
132
diff
changeset
|
3884 self.assertEqual(DoGet(_REMOTE, PATH4 % sr1), mrUid1) |
|
f0d4c4707e64
test_anonymize_relationships_3
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
132
diff
changeset
|
3885 self.assertEqual(mrSeries1, DoGet(_REMOTE, (PATH2 + '/0/SeriesInstanceUID') % sr1).strip('\x00')) |
|
f0d4c4707e64
test_anonymize_relationships_3
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
132
diff
changeset
|
3886 self.assertEqual(mrStudy1, DoGet(_REMOTE, (PATH1 + '/0/StudyInstanceUID') % sr1).strip('\x00')) |
|
f0d4c4707e64
test_anonymize_relationships_3
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
132
diff
changeset
|
3887 |
|
f0d4c4707e64
test_anonymize_relationships_3
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
132
diff
changeset
|
3888 self.assertEqual(1, len(DoGet(_REMOTE, PATH1 % sr2))) |
|
f0d4c4707e64
test_anonymize_relationships_3
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
132
diff
changeset
|
3889 self.assertEqual(1, len(DoGet(_REMOTE, PATH2 % sr2))) |
|
f0d4c4707e64
test_anonymize_relationships_3
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
132
diff
changeset
|
3890 self.assertEqual(1, len(DoGet(_REMOTE, PATH3 % sr2))) |
|
f0d4c4707e64
test_anonymize_relationships_3
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
132
diff
changeset
|
3891 self.assertEqual(DoGet(_REMOTE, PATH5 % sr1), DoGet(_REMOTE, PATH5 % sr2)) |
|
f0d4c4707e64
test_anonymize_relationships_3
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
132
diff
changeset
|
3892 |
|
f0d4c4707e64
test_anonymize_relationships_3
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
132
diff
changeset
|
3893 self.assertEqual(mrUid2, DoGet(_REMOTE, PATH4 % sr2).strip('\x00')) |
|
f0d4c4707e64
test_anonymize_relationships_3
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
132
diff
changeset
|
3894 self.assertEqual(mrSeries2, DoGet(_REMOTE, (PATH2 + '/0/SeriesInstanceUID') % sr2).strip('\x00')) |
|
f0d4c4707e64
test_anonymize_relationships_3
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
132
diff
changeset
|
3895 self.assertEqual(mrStudy2, DoGet(_REMOTE, (PATH1 + '/0/StudyInstanceUID') % sr2).strip('\x00')) |
|
f0d4c4707e64
test_anonymize_relationships_3
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
132
diff
changeset
|
3896 |
|
f0d4c4707e64
test_anonymize_relationships_3
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
132
diff
changeset
|
3897 content1 = DoGet(_REMOTE, '/instances/%s/tags?simplify' % sr1) ['ContentSequence'] |
|
f0d4c4707e64
test_anonymize_relationships_3
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
132
diff
changeset
|
3898 content2 = DoGet(_REMOTE, '/instances/%s/tags?simplify' % sr2) ['ContentSequence'] |
|
f0d4c4707e64
test_anonymize_relationships_3
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
132
diff
changeset
|
3899 self.assertEqual(str(content1), str(content2)) |
|
141
5de178abe4d8
test_bitbucket_issue_94
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
138
diff
changeset
|
3900 |
|
5de178abe4d8
test_bitbucket_issue_94
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
138
diff
changeset
|
3901 |
|
5de178abe4d8
test_bitbucket_issue_94
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
138
diff
changeset
|
3902 def test_bitbucket_issue_94(self): |
|
5de178abe4d8
test_bitbucket_issue_94
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
138
diff
changeset
|
3903 # "a simple instance modification should not modify FrameOfReferenceUID + ..." |
|
5de178abe4d8
test_bitbucket_issue_94
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
138
diff
changeset
|
3904 # https://bitbucket.org/sjodogne/orthanc/issues/94 |
|
5de178abe4d8
test_bitbucket_issue_94
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
138
diff
changeset
|
3905 i = UploadInstance(_REMOTE, 'Issue94.dcm')['ID'] |
|
5de178abe4d8
test_bitbucket_issue_94
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
138
diff
changeset
|
3906 |
|
5de178abe4d8
test_bitbucket_issue_94
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
138
diff
changeset
|
3907 source = DoGet(_REMOTE, '/instances/%s/attachments/dicom/data' % i) |
|
5de178abe4d8
test_bitbucket_issue_94
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
138
diff
changeset
|
3908 |
|
5de178abe4d8
test_bitbucket_issue_94
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
138
diff
changeset
|
3909 modified = DoPost(_REMOTE, '/instances/%s/modify' % i, |
|
5de178abe4d8
test_bitbucket_issue_94
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
138
diff
changeset
|
3910 { "Replace" : {"PatientID" : "toto"}, "Force": True}) |
|
5de178abe4d8
test_bitbucket_issue_94
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
138
diff
changeset
|
3911 |
|
5de178abe4d8
test_bitbucket_issue_94
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
138
diff
changeset
|
3912 anonymized = DoPost(_REMOTE, '/instances/%s/anonymize' % i) |
|
5de178abe4d8
test_bitbucket_issue_94
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
138
diff
changeset
|
3913 |
|
5de178abe4d8
test_bitbucket_issue_94
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
138
diff
changeset
|
3914 a = ExtractDicomTags(source, [ 'FrameOfReferenceUID' ]) |
|
5de178abe4d8
test_bitbucket_issue_94
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
138
diff
changeset
|
3915 self.assertEqual(1, len(a)) |
|
5de178abe4d8
test_bitbucket_issue_94
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
138
diff
changeset
|
3916 |
|
5de178abe4d8
test_bitbucket_issue_94
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
138
diff
changeset
|
3917 b = ExtractDicomTags(modified, [ 'FrameOfReferenceUID' ]) |
|
5de178abe4d8
test_bitbucket_issue_94
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
138
diff
changeset
|
3918 self.assertEqual(1, len(b)) |
|
5de178abe4d8
test_bitbucket_issue_94
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
138
diff
changeset
|
3919 |
|
5de178abe4d8
test_bitbucket_issue_94
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
138
diff
changeset
|
3920 c = ExtractDicomTags(anonymized, [ 'FrameOfReferenceUID' ]) |
|
5de178abe4d8
test_bitbucket_issue_94
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
138
diff
changeset
|
3921 self.assertEqual(1, len(c)) |
|
5de178abe4d8
test_bitbucket_issue_94
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
138
diff
changeset
|
3922 |
|
5de178abe4d8
test_bitbucket_issue_94
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
138
diff
changeset
|
3923 self.assertEqual(a, b) # Modified DICOM |
|
5de178abe4d8
test_bitbucket_issue_94
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
138
diff
changeset
|
3924 self.assertNotEqual(a, c) # Anonymized DICOM |
|
143
28d50ffac07d
test_metadata_origin
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
142
diff
changeset
|
3925 |
|
28d50ffac07d
test_metadata_origin
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
142
diff
changeset
|
3926 |
|
28d50ffac07d
test_metadata_origin
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
142
diff
changeset
|
3927 def test_metadata_origin(self): |
|
28d50ffac07d
test_metadata_origin
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
142
diff
changeset
|
3928 # Upload using the REST API |
|
144
7809fdf8056f
testing metadata?expand
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
143
diff
changeset
|
3929 i = UploadInstance(_REMOTE, 'Knee/T1/IM-0001-0001.dcm')['ID'] |
|
143
28d50ffac07d
test_metadata_origin
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
142
diff
changeset
|
3930 self.assertEqual('RestApi', DoGet(_REMOTE, '/instances/%s/metadata/Origin' % i)) |
|
28d50ffac07d
test_metadata_origin
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
142
diff
changeset
|
3931 self.assertEqual('', DoGet(_REMOTE, '/instances/%s/metadata/RemoteAET' % i)) |
|
28d50ffac07d
test_metadata_origin
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
142
diff
changeset
|
3932 self.assertNotEqual('', DoGet(_REMOTE, '/instances/%s/metadata/RemoteIP' % i)) |
|
28d50ffac07d
test_metadata_origin
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
142
diff
changeset
|
3933 self.assertRaises(Exception, lambda: DoGet(_REMOTE, '/instances/%s/metadata/CalledAET' % i)) |
|
28d50ffac07d
test_metadata_origin
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
142
diff
changeset
|
3934 self.assertEqual('alice', DoGet(_REMOTE, '/instances/%s/metadata/HttpUsername' % i)) |
|
28d50ffac07d
test_metadata_origin
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
142
diff
changeset
|
3935 |
|
144
7809fdf8056f
testing metadata?expand
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
143
diff
changeset
|
3936 m = DoGet(_REMOTE, '/instances/%s/metadata?expand' % i) |
|
7809fdf8056f
testing metadata?expand
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
143
diff
changeset
|
3937 self.assertEqual('RestApi', m['Origin']) |
|
7809fdf8056f
testing metadata?expand
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
143
diff
changeset
|
3938 self.assertEqual('', m['RemoteAET']) |
|
7809fdf8056f
testing metadata?expand
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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3939 self.assertNotEqual('', m['RemoteIP']) |
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3940 self.assertFalse('CalledAET' in m) |
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3941 self.assertEqual('alice', m['HttpUsername']) |
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3942 |
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3943 self.assertEqual('1.2.840.10008.1.2.4.91', m['TransferSyntax']) |
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3944 self.assertEqual('1.2.840.10008.5.1.4.1.1.4', m['SopClassUid']) |
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3945 self.assertEqual('1', m['IndexInSeries']) |
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3946 self.assertTrue('ReceptionDate' in m) |
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3947 |
|
143
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3948 DoDelete(_REMOTE, '/instances/%s' % i) |
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3949 |
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3950 # Upload using the DICOM protocol |
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3951 subprocess.check_call([ FindExecutable('storescu'), |
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3952 _REMOTE['Server'], str(_REMOTE['DicomPort']), |
|
144
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3953 GetDatabasePath('Knee/T1/IM-0001-0001.dcm'), |
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3954 '-xw' ]) # Propose JPEG2000 |
|
143
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3955 self.assertEqual('DicomProtocol', DoGet(_REMOTE, '/instances/%s/metadata/Origin' % i)) |
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3956 self.assertEqual('STORESCU', DoGet(_REMOTE, '/instances/%s/metadata/RemoteAET' % i)) |
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3957 self.assertNotEqual('', DoGet(_REMOTE, '/instances/%s/metadata/RemoteIP' % i)) |
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3958 self.assertEqual('ANY-SCP', DoGet(_REMOTE, '/instances/%s/metadata/CalledAET' % i)) |
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3959 self.assertRaises(Exception, lambda: DoGet(_REMOTE, '/instances/%s/metadata/HttpUsername' % i)) |
|
144
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3960 |
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3961 m = DoGet(_REMOTE, '/instances/%s/metadata?expand' % i) |
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3962 self.assertEqual('DicomProtocol', m['Origin']) |
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3963 self.assertEqual('STORESCU', m['RemoteAET']) |
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3964 self.assertNotEqual('', m['RemoteIP']) |
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3965 self.assertEqual('ANY-SCP', m['CalledAET']) |
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3966 self.assertFalse('HttpUsername' in m) |
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3967 |
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3968 self.assertEqual('1.2.840.10008.1.2.4.91', m['TransferSyntax']) |
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3969 self.assertEqual('1.2.840.10008.5.1.4.1.1.4', m['SopClassUid']) |
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3970 self.assertEqual('1', m['IndexInSeries']) |
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|
3971 self.assertTrue('ReceptionDate' in m) |
| 147 | 3972 |
| 3973 | |
| 3974 def test_lua_deadlock(self): | |
| 3975 # Rana Asim Wajid (2018-07-14): "It does seem that the issue | |
| 3976 # is with the lua script I'm using for conversion of images to | |
| 3977 # JPEG2000. When the script is used with 1.4.0 the first | |
| 3978 # instance appears to be stored and then everything just | |
| 3979 # halts, ie Orthanc wont respond to anything after that." | |
| 3980 # https://groups.google.com/d/msg/orthanc-users/Rc-Beb42xc8/JUgdzrmCAgAJ | |
| 174 | 3981 InstallLuaScriptFromPath(_REMOTE, 'Lua/Jpeg2000Conversion.lua') |
| 147 | 3982 |
| 3983 subprocess.check_call([ FindExecutable('storescu'), | |
| 3984 _REMOTE['Server'], str(_REMOTE['DicomPort']), | |
| 3985 GetDatabasePath('Brainix/Flair/IM-0001-0001.dcm'), | |
| 3986 GetDatabasePath('Brainix/Flair/IM-0001-0002.dcm'), | |
| 3987 ]) | |
| 3988 | |
| 3989 instances = DoGet(_REMOTE, '/instances') | |
| 3990 self.assertEqual(2, len(instances)) | |
| 3991 | |
| 3992 t1 = DoGet(_REMOTE, '/instances/%s/metadata/TransferSyntax' % instances[0]) | |
| 3993 t2 = DoGet(_REMOTE, '/instances/%s/metadata/TransferSyntax' % instances[1]) | |
| 175 | 3994 self.assertEqual('1.2.840.10008.1.2.4.90', t1) # this will fail if libgdcm-tools is not installed |
| 147 | 3995 self.assertEqual(t1, t2); |
|
154
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3996 |
|
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|
3997 |
|
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|
3998 def test_find_group_length(self): |
|
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3999 # Orthanc <= 1.4.1 fails to answer C-FIND queries that contain |
|
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|
4000 # one of the Generic Group Length tags (*, 0x0000) |
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4001 a = UploadInstance(_REMOTE, 'Brainix/Flair/IM-0001-0001.dcm')['ID'] |
|
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4002 result = CallFindScu([ '-k', '0008,0052=STUDY', '-k', '0008,0000=80' ]) |
|
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4003 self.assertFalse('UnableToProcess' in result) |
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4004 self.assertFalse('E:' in result) |
|
179
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4005 |
|
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|
4006 |
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|
4007 def test_split(self): |
|
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4008 UploadInstance(_REMOTE, 'Knee/T1/IM-0001-0001.dcm') |
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4009 UploadInstance(_REMOTE, 'Knee/T2/IM-0001-0001.dcm') |
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4010 study = '0a9b3153-2512774b-2d9580de-1fc3dcf6-3bd83918' |
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4011 t1 = '6de73705-c4e65c1b-9d9ea1b5-cabcd8e7-f15e4285' |
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4012 t2 = 'bbf7a453-0d34251a-03663b55-46bb31b9-ffd74c59' |
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|
4013 |
|
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|
4014 self.assertEqual(1, len(DoGet(_REMOTE, '/studies'))) |
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4015 self.assertEqual(2, len(DoGet(_REMOTE, '/series'))) |
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|
4016 |
|
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|
4017 info = DoGet(_REMOTE, '/studies/%s' % study) |
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|
4018 self.assertTrue('ReferringPhysicianName' in info['MainDicomTags']) |
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changeset
|
4019 |
|
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|
4020 job = MonitorJob2(_REMOTE, lambda: DoPost |
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diff
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|
4021 (_REMOTE, '/studies/%s/split' % study, { |
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diff
changeset
|
4022 'Series' : [ t2 ], |
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|
4023 'Replace' : { 'PatientName' : 'Hello' }, |
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diff
changeset
|
4024 'Remove' : [ 'ReferringPhysicianName' ], |
| 181 | 4025 'KeepSource' : False, |
| 4026 'Asynchronous' : True | |
|
179
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changeset
|
4027 })) |
|
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diff
changeset
|
4028 |
|
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diff
changeset
|
4029 self.assertNotEqual(None, job) |
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diff
changeset
|
4030 |
|
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diff
changeset
|
4031 studies = set(DoGet(_REMOTE, '/studies')) |
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changeset
|
4032 self.assertEqual(2, len(studies)) |
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changeset
|
4033 |
|
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changeset
|
4034 series = set(DoGet(_REMOTE, '/series')) |
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|
4035 self.assertEqual(2, len(series)) |
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|
4036 self.assertTrue(t1 in series) |
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|
4037 |
|
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diff
changeset
|
4038 study2 = DoGet(_REMOTE, '/jobs/%s' % job)['Content']['TargetStudy'] |
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|
4039 self.assertTrue(study in studies) |
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|
4040 self.assertTrue(study2 in studies) |
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diff
changeset
|
4041 |
|
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diff
changeset
|
4042 info = DoGet(_REMOTE, '/studies/%s' % study2) |
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|
4043 self.assertTrue('Hello', info['PatientMainDicomTags']['PatientName']) |
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|
4044 self.assertFalse('ReferringPhysicianName' in info['MainDicomTags']) |
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|
4045 |
|
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diff
changeset
|
4046 |
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|
4047 def test_merge(self): |
|
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|
4048 UploadInstance(_REMOTE, 'Knee/T1/IM-0001-0001.dcm') |
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|
4049 UploadInstance(_REMOTE, 'Brainix/Flair/IM-0001-0001.dcm')['ID'] |
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diff
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|
4050 knee = '0a9b3153-2512774b-2d9580de-1fc3dcf6-3bd83918' |
|
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diff
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|
4051 t1 = '6de73705-c4e65c1b-9d9ea1b5-cabcd8e7-f15e4285' |
|
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diff
changeset
|
4052 brainix = '27f7126f-4f66fb14-03f4081b-f9341db2-53925988' |
|
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diff
changeset
|
4053 flair = '1e2c125c-411b8e86-3f4fe68e-a7584dd3-c6da78f0' |
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changeset
|
4054 |
|
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diff
changeset
|
4055 self.assertEqual(2, len(DoGet(_REMOTE, '/studies'))) |
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|
4056 self.assertEqual(2, len(DoGet(_REMOTE, '/series'))) |
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|
4057 |
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diff
changeset
|
4058 job = MonitorJob2(_REMOTE, lambda: DoPost |
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diff
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|
4059 (_REMOTE, '/studies/%s/merge' % knee, { |
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changeset
|
4060 'Resources' : [ brainix ], |
| 181 | 4061 'KeepSource' : True, |
| 4062 'Synchronous' : False | |
|
179
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|
4063 })) |
|
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changeset
|
4064 |
|
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|
4065 self.assertNotEqual(None, job) |
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4066 |
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4067 studies = set(DoGet(_REMOTE, '/studies')) |
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4068 self.assertEqual(2, len(studies)) |
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4069 self.assertTrue(knee in studies) |
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4070 self.assertTrue(brainix in studies) |
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4071 |
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4072 series = set(DoGet(_REMOTE, '/studies/%s' % knee)['Series']) |
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4073 self.assertTrue(t1 in series) |
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4074 series.remove(t1) |
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4075 self.assertEqual(1, len(series)) |
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4076 |
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4077 instances = DoGet(_REMOTE, '/series/%s' % list(series)[0])['Instances'] |
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4078 self.assertEqual(1, len(instances)) |
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4079 merged = DoGet(_REMOTE, '/instances/%s/tags?simplify' % instances[0]) |
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4080 |
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4081 instances = DoGet(_REMOTE, '/series/%s' % t1)['Instances'] |
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4082 self.assertEqual(1, len(instances)) |
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4083 a = DoGet(_REMOTE, '/instances/%s/tags?simplify' % instances[0]) |
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4084 |
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4085 instances = DoGet(_REMOTE, '/series/%s' % flair)['Instances'] |
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4086 self.assertEqual(1, len(instances)) |
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4087 b = DoGet(_REMOTE, '/instances/%s/tags?simplify' % instances[0]) |
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4088 |
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4089 tags = DoGet(_REMOTE, '/studies/%s' % knee) |
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4090 |
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4091 for key in tags['PatientMainDicomTags']: |
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4092 self.assertEqual(a[key], merged[key]) |
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4093 if (key in b and key != 'PatientSex'): |
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4094 self.assertNotEqual(a[key], b[key]) |
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4095 |
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4096 for key in tags['MainDicomTags']: |
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4097 # Not in the patient/study module |
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4098 if (not key in [ 'InstitutionName', |
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4099 'RequestingPhysician', |
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4100 'RequestedProcedureDescription', ]): |
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4101 self.assertEqual(a[key], merged[key]) |
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4102 if (key in b): |
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4103 self.assertNotEqual(a[key], b[key]) |
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4104 |
| 187 | 4105 |
| 4106 def test_async_archive(self): | |
| 4107 # Testing the asynchronous generation of archives/medias (new | |
| 4108 # in Orthanc 1.4.3) | |
| 4109 UploadInstance(_REMOTE, 'Knee/T1/IM-0001-0001.dcm') | |
| 4110 UploadInstance(_REMOTE, 'Knee/T2/IM-0001-0001.dcm') | |
| 4111 | |
| 4112 kneeT1 = '6de73705-c4e65c1b-9d9ea1b5-cabcd8e7-f15e4285' | |
| 4113 kneeT2 = 'bbf7a453-0d34251a-03663b55-46bb31b9-ffd74c59' | |
| 4114 | |
| 4115 job = MonitorJob2(_REMOTE, lambda: DoPost | |
| 4116 (_REMOTE, '/studies/%s/archive' % kneeT1, { | |
| 4117 'Synchronous' : False | |
| 4118 })) | |
| 4119 | |
| 4120 z = GetArchive(_REMOTE, '/jobs/%s/archive' % job) | |
| 4121 self.assertEqual(1, len(z.namelist())) | |
| 4122 self.assertFalse('DICOMDIR' in z.namelist()) | |
| 4123 | |
| 4124 job2 = MonitorJob2(_REMOTE, lambda: DoPost | |
| 4125 (_REMOTE, '/studies/%s/media' % kneeT1, { | |
| 4126 'Synchronous' : False | |
| 4127 })) | |
| 4128 | |
| 4129 # The archive from the first job has been replaced by the | |
| 4130 # archive from second job (as MediaArchiveSize == 1) | |
| 4131 self.assertRaises(Exception, lambda: GetArchive(_REMOTE, '/jobs/%s/archive' % job)) | |
| 4132 | |
| 4133 z = GetArchive(_REMOTE, '/jobs/%s/archive' % job2) | |
| 4134 self.assertEqual(2, len(z.namelist())) | |
| 4135 self.assertTrue('DICOMDIR' in z.namelist()) | |
| 4136 | |
| 4137 job = MonitorJob2(_REMOTE, lambda: DoPost | |
| 4138 (_REMOTE, '/tools/create-archive', { | |
| 4139 'Synchronous' : False, | |
| 4140 'Resources' : [ kneeT1, kneeT2 ], | |
| 4141 })) | |
| 4142 | |
| 4143 z = GetArchive(_REMOTE, '/jobs/%s/archive' % job) | |
| 4144 self.assertEqual(2, len(z.namelist())) | |
| 4145 self.assertFalse('DICOMDIR' in z.namelist()) | |
| 4146 | |
| 4147 job = MonitorJob2(_REMOTE, lambda: DoPost | |
| 4148 (_REMOTE, '/tools/create-media', { | |
| 4149 'Synchronous' : False, | |
| 4150 'Resources' : [ kneeT1, kneeT2 ], | |
| 4151 })) | |
| 4152 | |
| 4153 z = GetArchive(_REMOTE, '/jobs/%s/archive' % job) | |
| 4154 self.assertEqual(3, len(z.namelist())) | |
| 4155 self.assertTrue('DICOMDIR' in z.namelist()) | |
|
188
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4156 |
| 187 | 4157 |
|
188
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4158 def test_queries_hierarchy(self): |
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4159 UploadInstance(_REMOTE, 'Knee/T1/IM-0001-0001.dcm') |
|
189
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4160 UploadInstance(_REMOTE, 'Brainix/Flair/IM-0001-0001.dcm') |
|
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4161 |
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4162 tags = { |
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4163 'NumberOfPatientRelatedInstances' : '', |
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4164 'NumberOfPatientRelatedSeries' : '', |
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4165 'NumberOfPatientRelatedStudies' : '', |
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4166 'NumberOfStudyRelatedInstances' : '', |
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4167 'NumberOfStudyRelatedSeries' : '', |
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4168 'NumberOfSeriesRelatedInstances' : '', |
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4169 } |
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4170 |
|
189
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4171 tags2 = copy.copy(tags) |
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4172 tags2['PatientID'] = '887' # Only consider the "Knee" patient |
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4173 |
|
188
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4174 patient = DoPost(_REMOTE, '/modalities/self/query', { |
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4175 'Level' : 'Patient', |
|
189
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4176 'Query' : tags2 |
|
188
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4177 }) ['ID'] |
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4178 |
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4179 study = DoPost(_REMOTE, '/modalities/self/query', { |
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4180 'Level' : 'Study', |
|
189
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4181 'Query' : tags2 |
|
188
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4182 }) ['ID'] |
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4183 |
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4184 series = DoPost(_REMOTE, '/modalities/self/query', { |
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4185 'Level' : 'Series', |
|
189
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4186 'Query' : tags2 |
|
188
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4187 }) ['ID'] |
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4188 |
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4189 instance = DoPost(_REMOTE, '/modalities/self/query', { |
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4190 'Level' : 'Instance', |
|
189
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4191 'Query' : tags2 |
|
188
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4192 }) ['ID'] |
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4193 |
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4194 p = DoGet(_REMOTE, '/queries/%s/answers?expand&simplify' % patient) |
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4195 self.assertEqual(1, len(p)) |
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4196 self.assertEqual('887', p[0]['PatientID']) |
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4197 self.assertEqual('1', p[0]['NumberOfPatientRelatedInstances']) |
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4198 self.assertEqual('1', p[0]['NumberOfPatientRelatedSeries']) |
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4199 self.assertEqual('1', p[0]['NumberOfPatientRelatedStudies']) |
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4200 self.assertFalse('NumberOfStudyRelatedInstances' in p[0]) |
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4201 self.assertFalse('NumberOfStudyRelatedSeries' in p[0]) |
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4202 self.assertFalse('NumberOfSeriesRelatedInstances' in p[0]) |
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4203 |
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4204 p = DoGet(_REMOTE, '/queries/%s/answers?expand&simplify' % study) |
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4205 self.assertEqual(1, len(p)) |
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4206 self.assertEqual('2.16.840.1.113669.632.20.121711.10000160881', p[0]['StudyInstanceUID']) |
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4207 self.assertEqual('1', p[0]['NumberOfStudyRelatedInstances']) |
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4208 self.assertEqual('1', p[0]['NumberOfStudyRelatedSeries']) |
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4209 self.assertFalse('NumberOfPatientRelatedInstances' in p[0]) |
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4210 self.assertFalse('NumberOfPatientRelatedSeries' in p[0]) |
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4211 self.assertFalse('NumberOfPatientRelatedInstances' in p[0]) |
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diff
changeset
|
4212 self.assertFalse('NumberOfSeriesRelatedInstances' in p[0]) |
|
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new test: test_queries_hierarchy
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diff
changeset
|
4213 |
|
7d585263808b
new test: test_queries_hierarchy
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diff
changeset
|
4214 p = DoGet(_REMOTE, '/queries/%s/answers?expand&simplify' % series) |
|
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new test: test_queries_hierarchy
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diff
changeset
|
4215 self.assertEqual(1, len(p)) |
|
7d585263808b
new test: test_queries_hierarchy
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diff
changeset
|
4216 self.assertEqual('1.3.46.670589.11.17521.5.0.3124.2008081908564160709', p[0]['SeriesInstanceUID']) |
|
7d585263808b
new test: test_queries_hierarchy
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diff
changeset
|
4217 self.assertEqual('1', p[0]['NumberOfSeriesRelatedInstances']) |
|
7d585263808b
new test: test_queries_hierarchy
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diff
changeset
|
4218 self.assertFalse('NumberOfPatientRelatedInstances' in p[0]) |
|
7d585263808b
new test: test_queries_hierarchy
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parents:
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diff
changeset
|
4219 self.assertFalse('NumberOfPatientRelatedSeries' in p[0]) |
|
7d585263808b
new test: test_queries_hierarchy
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parents:
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diff
changeset
|
4220 self.assertFalse('NumberOfPatientRelatedInstances' in p[0]) |
|
7d585263808b
new test: test_queries_hierarchy
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diff
changeset
|
4221 self.assertFalse('NumberOfStudyRelatedInstances' in p[0]) |
|
7d585263808b
new test: test_queries_hierarchy
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diff
changeset
|
4222 self.assertFalse('NumberOfStudyRelatedSeries' in p[0]) |
|
7d585263808b
new test: test_queries_hierarchy
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diff
changeset
|
4223 |
|
7d585263808b
new test: test_queries_hierarchy
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diff
changeset
|
4224 p = DoGet(_REMOTE, '/queries/%s/answers?expand&simplify' % instance) |
|
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new test: test_queries_hierarchy
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diff
changeset
|
4225 self.assertEqual(1, len(p)) |
|
7d585263808b
new test: test_queries_hierarchy
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diff
changeset
|
4226 self.assertEqual('1.3.46.670589.11.17521.5.0.3124.2008081908590448738', p[0]['SOPInstanceUID']) |
|
7d585263808b
new test: test_queries_hierarchy
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diff
changeset
|
4227 |
|
7d585263808b
new test: test_queries_hierarchy
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diff
changeset
|
4228 j = DoPost(_REMOTE, '/queries/%s/answers/0/query-studies' % patient, |
|
7d585263808b
new test: test_queries_hierarchy
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parents:
187
diff
changeset
|
4229 { 'Query' : tags }) ['ID'] |
|
7d585263808b
new test: test_queries_hierarchy
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parents:
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diff
changeset
|
4230 self.assertEqual(DoGet(_REMOTE, '/queries/%s/answers?expand&simplify' % j), |
|
7d585263808b
new test: test_queries_hierarchy
Sebastien Jodogne <s.jodogne@gmail.com>
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diff
changeset
|
4231 DoGet(_REMOTE, '/queries/%s/answers?expand&simplify' % study)) |
|
189
11719f19bd62
test_dicom_disk_size
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
188
diff
changeset
|
4232 |
|
188
7d585263808b
new test: test_queries_hierarchy
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diff
changeset
|
4233 j = DoPost(_REMOTE, '/queries/%s/answers/0/query-series' % patient, |
|
7d585263808b
new test: test_queries_hierarchy
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parents:
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diff
changeset
|
4234 { 'Query' : tags }) ['ID'] |
|
7d585263808b
new test: test_queries_hierarchy
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parents:
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diff
changeset
|
4235 self.assertEqual(DoGet(_REMOTE, '/queries/%s/answers?expand&simplify' % j), |
|
7d585263808b
new test: test_queries_hierarchy
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parents:
187
diff
changeset
|
4236 DoGet(_REMOTE, '/queries/%s/answers?expand&simplify' % series)) |
|
7d585263808b
new test: test_queries_hierarchy
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parents:
187
diff
changeset
|
4237 |
|
7d585263808b
new test: test_queries_hierarchy
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parents:
187
diff
changeset
|
4238 j = DoPost(_REMOTE, '/queries/%s/answers/0/query-instances' % patient, |
|
7d585263808b
new test: test_queries_hierarchy
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parents:
187
diff
changeset
|
4239 { 'Query' : tags }) ['ID'] |
|
7d585263808b
new test: test_queries_hierarchy
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parents:
187
diff
changeset
|
4240 self.assertEqual(DoGet(_REMOTE, '/queries/%s/answers?expand&simplify' % j), |
|
7d585263808b
new test: test_queries_hierarchy
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parents:
187
diff
changeset
|
4241 DoGet(_REMOTE, '/queries/%s/answers?expand&simplify' % instance)) |
|
7d585263808b
new test: test_queries_hierarchy
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parents:
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diff
changeset
|
4242 |
|
7d585263808b
new test: test_queries_hierarchy
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parents:
187
diff
changeset
|
4243 j = DoPost(_REMOTE, '/queries/%s/answers/0/query-series' % study, |
|
7d585263808b
new test: test_queries_hierarchy
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
187
diff
changeset
|
4244 { 'Query' : tags }) ['ID'] |
|
7d585263808b
new test: test_queries_hierarchy
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
187
diff
changeset
|
4245 self.assertEqual(DoGet(_REMOTE, '/queries/%s/answers?expand&simplify' % j), |
|
7d585263808b
new test: test_queries_hierarchy
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
187
diff
changeset
|
4246 DoGet(_REMOTE, '/queries/%s/answers?expand&simplify' % series)) |
|
7d585263808b
new test: test_queries_hierarchy
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parents:
187
diff
changeset
|
4247 |
|
7d585263808b
new test: test_queries_hierarchy
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
187
diff
changeset
|
4248 j = DoPost(_REMOTE, '/queries/%s/answers/0/query-instances' % study, |
|
7d585263808b
new test: test_queries_hierarchy
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
187
diff
changeset
|
4249 { 'Query' : tags }) ['ID'] |
|
7d585263808b
new test: test_queries_hierarchy
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
187
diff
changeset
|
4250 self.assertEqual(DoGet(_REMOTE, '/queries/%s/answers?expand&simplify' % j), |
|
7d585263808b
new test: test_queries_hierarchy
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
187
diff
changeset
|
4251 DoGet(_REMOTE, '/queries/%s/answers?expand&simplify' % instance)) |
|
7d585263808b
new test: test_queries_hierarchy
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parents:
187
diff
changeset
|
4252 |
|
7d585263808b
new test: test_queries_hierarchy
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
187
diff
changeset
|
4253 j = DoPost(_REMOTE, '/queries/%s/answers/0/query-instances' % series, |
|
7d585263808b
new test: test_queries_hierarchy
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
187
diff
changeset
|
4254 { 'Query' : tags }) ['ID'] |
|
7d585263808b
new test: test_queries_hierarchy
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
187
diff
changeset
|
4255 self.assertEqual(DoGet(_REMOTE, '/queries/%s/answers?expand&simplify' % j), |
|
7d585263808b
new test: test_queries_hierarchy
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
187
diff
changeset
|
4256 DoGet(_REMOTE, '/queries/%s/answers?expand&simplify' % instance)) |
|
7d585263808b
new test: test_queries_hierarchy
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
187
diff
changeset
|
4257 |
|
7d585263808b
new test: test_queries_hierarchy
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
187
diff
changeset
|
4258 |
|
189
11719f19bd62
test_dicom_disk_size
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
188
diff
changeset
|
4259 def test_dicom_disk_size(self): |
|
11719f19bd62
test_dicom_disk_size
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
188
diff
changeset
|
4260 dicomSize = 0 |
|
11719f19bd62
test_dicom_disk_size
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
188
diff
changeset
|
4261 |
|
11719f19bd62
test_dicom_disk_size
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
188
diff
changeset
|
4262 UploadInstance(_REMOTE, 'Brainix/Flair/IM-0001-0001.dcm') |
|
11719f19bd62
test_dicom_disk_size
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
188
diff
changeset
|
4263 |
|
11719f19bd62
test_dicom_disk_size
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
188
diff
changeset
|
4264 for i in range(2): |
|
11719f19bd62
test_dicom_disk_size
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
188
diff
changeset
|
4265 p = 'Knee/T%d/IM-0001-0001.dcm' % (i + 1) |
|
11719f19bd62
test_dicom_disk_size
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
188
diff
changeset
|
4266 UploadInstance(_REMOTE, p) |
|
11719f19bd62
test_dicom_disk_size
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
188
diff
changeset
|
4267 dicomSize += os.path.getsize(GetDatabasePath(p)) |
|
11719f19bd62
test_dicom_disk_size
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
188
diff
changeset
|
4268 |
|
11719f19bd62
test_dicom_disk_size
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
188
diff
changeset
|
4269 s = DoGet(_REMOTE, '/patients/ca29faea-b6a0e17f-067743a1-8b778011-a48b2a17/statistics') # Consider Knee patient |
|
11719f19bd62
test_dicom_disk_size
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
188
diff
changeset
|
4270 self.assertEqual(2, s['CountInstances']) |
|
11719f19bd62
test_dicom_disk_size
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
188
diff
changeset
|
4271 self.assertEqual(2, s['CountSeries']) |
|
11719f19bd62
test_dicom_disk_size
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
188
diff
changeset
|
4272 self.assertEqual(1, s['CountStudies']) |
|
11719f19bd62
test_dicom_disk_size
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
188
diff
changeset
|
4273 self.assertEqual(dicomSize, int(s['DicomDiskSize'])) |
|
11719f19bd62
test_dicom_disk_size
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
188
diff
changeset
|
4274 self.assertEqual(dicomSize, int(s['DicomUncompressedSize'])) |
|
11719f19bd62
test_dicom_disk_size
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
188
diff
changeset
|
4275 self.assertLess(dicomSize, int(s['UncompressedSize'])) |
|
11719f19bd62
test_dicom_disk_size
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
188
diff
changeset
|
4276 self.assertEqual(s['UncompressedSize'], s['DiskSize']) |
|
11719f19bd62
test_dicom_disk_size
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
188
diff
changeset
|
4277 |
|
202
f26f9ae9c599
test_changes_2 and test_bitbucket_issue_124
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
195
diff
changeset
|
4278 |
|
f26f9ae9c599
test_changes_2 and test_bitbucket_issue_124
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
195
diff
changeset
|
4279 def test_changes_2(self): |
|
f26f9ae9c599
test_changes_2 and test_bitbucket_issue_124
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
195
diff
changeset
|
4280 # More consistent behavior since Orthanc 1.5.2 |
|
f26f9ae9c599
test_changes_2 and test_bitbucket_issue_124
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
195
diff
changeset
|
4281 # https://groups.google.com/d/msg/orthanc-users/QhzB6vxYeZ0/YxabgqpfBAAJ |
|
f26f9ae9c599
test_changes_2 and test_bitbucket_issue_124
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
195
diff
changeset
|
4282 |
|
f26f9ae9c599
test_changes_2 and test_bitbucket_issue_124
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
195
diff
changeset
|
4283 # Make sure that this is not the first change |
|
f26f9ae9c599
test_changes_2 and test_bitbucket_issue_124
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
195
diff
changeset
|
4284 self.assertEqual(0, len(DoGet(_REMOTE, '/instances'))) |
|
f26f9ae9c599
test_changes_2 and test_bitbucket_issue_124
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
195
diff
changeset
|
4285 a = UploadInstance(_REMOTE, 'DummyCT.dcm')['ID'] |
|
f26f9ae9c599
test_changes_2 and test_bitbucket_issue_124
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
195
diff
changeset
|
4286 self.assertEqual(1, len(DoGet(_REMOTE, '/instances'))) |
|
f26f9ae9c599
test_changes_2 and test_bitbucket_issue_124
Sebastien Jodogne <s.jodogne@gmail.com>
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195
diff
changeset
|
4287 DoDelete(_REMOTE, '/instances/%s' % a) |
|
f26f9ae9c599
test_changes_2 and test_bitbucket_issue_124
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
195
diff
changeset
|
4288 |
|
f26f9ae9c599
test_changes_2 and test_bitbucket_issue_124
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
195
diff
changeset
|
4289 # No more instance, but there were previous changes |
|
f26f9ae9c599
test_changes_2 and test_bitbucket_issue_124
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
195
diff
changeset
|
4290 self.assertEqual(0, len(DoGet(_REMOTE, '/instances'))) |
|
f26f9ae9c599
test_changes_2 and test_bitbucket_issue_124
Sebastien Jodogne <s.jodogne@gmail.com>
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195
diff
changeset
|
4291 |
|
f26f9ae9c599
test_changes_2 and test_bitbucket_issue_124
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
195
diff
changeset
|
4292 c = DoGet(_REMOTE, '/changes') |
|
f26f9ae9c599
test_changes_2 and test_bitbucket_issue_124
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
195
diff
changeset
|
4293 self.assertEqual(0, len(c['Changes'])) |
|
f26f9ae9c599
test_changes_2 and test_bitbucket_issue_124
Sebastien Jodogne <s.jodogne@gmail.com>
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diff
changeset
|
4294 self.assertTrue(c['Done']) |
|
f26f9ae9c599
test_changes_2 and test_bitbucket_issue_124
Sebastien Jodogne <s.jodogne@gmail.com>
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195
diff
changeset
|
4295 seq = c['Last'] |
|
f26f9ae9c599
test_changes_2 and test_bitbucket_issue_124
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
195
diff
changeset
|
4296 |
|
f26f9ae9c599
test_changes_2 and test_bitbucket_issue_124
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
195
diff
changeset
|
4297 c = DoGet(_REMOTE, '/changes?last') |
|
f26f9ae9c599
test_changes_2 and test_bitbucket_issue_124
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
195
diff
changeset
|
4298 self.assertEqual(0, len(c['Changes'])) |
|
f26f9ae9c599
test_changes_2 and test_bitbucket_issue_124
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
changeset
|
4299 self.assertTrue(c['Done']) |
|
f26f9ae9c599
test_changes_2 and test_bitbucket_issue_124
Sebastien Jodogne <s.jodogne@gmail.com>
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diff
changeset
|
4300 self.assertEqual(seq, c['Last']) |
|
f26f9ae9c599
test_changes_2 and test_bitbucket_issue_124
Sebastien Jodogne <s.jodogne@gmail.com>
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diff
changeset
|
4301 |
|
f26f9ae9c599
test_changes_2 and test_bitbucket_issue_124
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
195
diff
changeset
|
4302 c = DoGet(_REMOTE, '/changes?since=%d' % (seq + 1000)) |
|
f26f9ae9c599
test_changes_2 and test_bitbucket_issue_124
Sebastien Jodogne <s.jodogne@gmail.com>
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diff
changeset
|
4303 self.assertEqual(0, len(c['Changes'])) |
|
f26f9ae9c599
test_changes_2 and test_bitbucket_issue_124
Sebastien Jodogne <s.jodogne@gmail.com>
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diff
changeset
|
4304 self.assertTrue(c['Done']) |
|
f26f9ae9c599
test_changes_2 and test_bitbucket_issue_124
Sebastien Jodogne <s.jodogne@gmail.com>
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diff
changeset
|
4305 self.assertEqual(seq, c['Last']) |
|
f26f9ae9c599
test_changes_2 and test_bitbucket_issue_124
Sebastien Jodogne <s.jodogne@gmail.com>
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diff
changeset
|
4306 |
|
f26f9ae9c599
test_changes_2 and test_bitbucket_issue_124
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diff
changeset
|
4307 # Add one instance |
|
f26f9ae9c599
test_changes_2 and test_bitbucket_issue_124
Sebastien Jodogne <s.jodogne@gmail.com>
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diff
changeset
|
4308 UploadInstance(_REMOTE, 'DummyCT.dcm') |
|
f26f9ae9c599
test_changes_2 and test_bitbucket_issue_124
Sebastien Jodogne <s.jodogne@gmail.com>
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diff
changeset
|
4309 self.assertEqual(1, len(DoGet(_REMOTE, '/instances'))) |
|
f26f9ae9c599
test_changes_2 and test_bitbucket_issue_124
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
195
diff
changeset
|
4310 |
|
f26f9ae9c599
test_changes_2 and test_bitbucket_issue_124
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
195
diff
changeset
|
4311 c = DoGet(_REMOTE, '/changes') |
|
f26f9ae9c599
test_changes_2 and test_bitbucket_issue_124
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
195
diff
changeset
|
4312 self.assertEqual(4, len(c['Changes'])) |
|
f26f9ae9c599
test_changes_2 and test_bitbucket_issue_124
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
195
diff
changeset
|
4313 self.assertTrue(c['Done']) |
|
f26f9ae9c599
test_changes_2 and test_bitbucket_issue_124
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
195
diff
changeset
|
4314 self.assertEqual(seq + 4, c['Last']) |
|
f26f9ae9c599
test_changes_2 and test_bitbucket_issue_124
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
195
diff
changeset
|
4315 |
|
f26f9ae9c599
test_changes_2 and test_bitbucket_issue_124
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
195
diff
changeset
|
4316 c = DoGet(_REMOTE, '/changes?last') |
|
f26f9ae9c599
test_changes_2 and test_bitbucket_issue_124
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
195
diff
changeset
|
4317 self.assertEqual(1, len(c['Changes'])) |
|
f26f9ae9c599
test_changes_2 and test_bitbucket_issue_124
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
195
diff
changeset
|
4318 self.assertTrue(c['Done']) |
|
f26f9ae9c599
test_changes_2 and test_bitbucket_issue_124
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
195
diff
changeset
|
4319 self.assertEqual(seq + 4, c['Last']) |
|
f26f9ae9c599
test_changes_2 and test_bitbucket_issue_124
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
195
diff
changeset
|
4320 |
|
f26f9ae9c599
test_changes_2 and test_bitbucket_issue_124
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
195
diff
changeset
|
4321 c = DoGet(_REMOTE, '/changes?since=%d' % (seq + 1000)) |
|
f26f9ae9c599
test_changes_2 and test_bitbucket_issue_124
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
195
diff
changeset
|
4322 self.assertEqual(0, len(c['Changes'])) |
|
f26f9ae9c599
test_changes_2 and test_bitbucket_issue_124
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
195
diff
changeset
|
4323 self.assertTrue(c['Done']) |
|
f26f9ae9c599
test_changes_2 and test_bitbucket_issue_124
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
195
diff
changeset
|
4324 self.assertEqual(seq + 4, c['Last']) |
|
f26f9ae9c599
test_changes_2 and test_bitbucket_issue_124
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
195
diff
changeset
|
4325 |
|
f26f9ae9c599
test_changes_2 and test_bitbucket_issue_124
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
195
diff
changeset
|
4326 # Remove the uploaded instance |
|
f26f9ae9c599
test_changes_2 and test_bitbucket_issue_124
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
195
diff
changeset
|
4327 DoDelete(_REMOTE, '/instances/%s' % a) |
|
f26f9ae9c599
test_changes_2 and test_bitbucket_issue_124
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
195
diff
changeset
|
4328 self.assertEqual(0, len(DoGet(_REMOTE, '/instances'))) |
|
f26f9ae9c599
test_changes_2 and test_bitbucket_issue_124
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
195
diff
changeset
|
4329 |
|
f26f9ae9c599
test_changes_2 and test_bitbucket_issue_124
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
195
diff
changeset
|
4330 c = DoGet(_REMOTE, '/changes') |
|
f26f9ae9c599
test_changes_2 and test_bitbucket_issue_124
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
195
diff
changeset
|
4331 self.assertEqual(0, len(c['Changes'])) |
|
f26f9ae9c599
test_changes_2 and test_bitbucket_issue_124
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
195
diff
changeset
|
4332 self.assertTrue(c['Done']) |
|
f26f9ae9c599
test_changes_2 and test_bitbucket_issue_124
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
195
diff
changeset
|
4333 self.assertEqual(seq + 4, c['Last']) |
|
f26f9ae9c599
test_changes_2 and test_bitbucket_issue_124
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
195
diff
changeset
|
4334 |
|
f26f9ae9c599
test_changes_2 and test_bitbucket_issue_124
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
195
diff
changeset
|
4335 c = DoGet(_REMOTE, '/changes?last') |
|
f26f9ae9c599
test_changes_2 and test_bitbucket_issue_124
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
195
diff
changeset
|
4336 self.assertEqual(0, len(c['Changes'])) |
|
f26f9ae9c599
test_changes_2 and test_bitbucket_issue_124
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
195
diff
changeset
|
4337 self.assertTrue(c['Done']) |
|
f26f9ae9c599
test_changes_2 and test_bitbucket_issue_124
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
195
diff
changeset
|
4338 self.assertEqual(seq + 4, c['Last']) |
|
f26f9ae9c599
test_changes_2 and test_bitbucket_issue_124
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
195
diff
changeset
|
4339 |
|
f26f9ae9c599
test_changes_2 and test_bitbucket_issue_124
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
195
diff
changeset
|
4340 c = DoGet(_REMOTE, '/changes?since=%d' % (seq + 1000)) |
|
f26f9ae9c599
test_changes_2 and test_bitbucket_issue_124
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
195
diff
changeset
|
4341 self.assertEqual(0, len(c['Changes'])) |
|
f26f9ae9c599
test_changes_2 and test_bitbucket_issue_124
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
195
diff
changeset
|
4342 self.assertTrue(c['Done']) |
|
f26f9ae9c599
test_changes_2 and test_bitbucket_issue_124
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
195
diff
changeset
|
4343 self.assertEqual(seq + 4, c['Last']) |
|
f26f9ae9c599
test_changes_2 and test_bitbucket_issue_124
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
195
diff
changeset
|
4344 |
|
f26f9ae9c599
test_changes_2 and test_bitbucket_issue_124
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
195
diff
changeset
|
4345 |
|
f26f9ae9c599
test_changes_2 and test_bitbucket_issue_124
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
195
diff
changeset
|
4346 def test_bitbucket_issue_124(self): |
|
f26f9ae9c599
test_changes_2 and test_bitbucket_issue_124
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
195
diff
changeset
|
4347 a = UploadInstance(_REMOTE, 'Issue124.dcm')['ID'] |
|
f26f9ae9c599
test_changes_2 and test_bitbucket_issue_124
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
195
diff
changeset
|
4348 |
|
f26f9ae9c599
test_changes_2 and test_bitbucket_issue_124
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
195
diff
changeset
|
4349 z = GetArchive(_REMOTE, '/patients/%s/media' % a) |
|
f26f9ae9c599
test_changes_2 and test_bitbucket_issue_124
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
195
diff
changeset
|
4350 self.assertEqual(2, len(z.namelist())) |
|
207
a515eec74078
test_invalid_findscp
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
202
diff
changeset
|
4351 |
|
a515eec74078
test_invalid_findscp
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
202
diff
changeset
|
4352 |
|
a515eec74078
test_invalid_findscp
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
202
diff
changeset
|
4353 def test_invalid_findscp(self): |
|
a515eec74078
test_invalid_findscp
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
202
diff
changeset
|
4354 UploadInstance(_REMOTE, 'DummyCT.dcm') |
|
a515eec74078
test_invalid_findscp
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
202
diff
changeset
|
4355 findscu = CallFindScu([ '-S', '-k', '8,52=IMAGE', '-k', '8,16', '-k', '2,2' ]) |
|
a515eec74078
test_invalid_findscp
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
202
diff
changeset
|
4356 self.assertEqual(0, len(re.findall('\(0002,0002\)', findscu))) |
|
208
2444c9a7c422
test_bitbucket_issue_90
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
207
diff
changeset
|
4357 |
|
2444c9a7c422
test_bitbucket_issue_90
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
207
diff
changeset
|
4358 |
|
2444c9a7c422
test_bitbucket_issue_90
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
207
diff
changeset
|
4359 def test_bitbucket_issue_90(self): |
|
2444c9a7c422
test_bitbucket_issue_90
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
207
diff
changeset
|
4360 def CountDicomResults(sex): |
|
2444c9a7c422
test_bitbucket_issue_90
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
207
diff
changeset
|
4361 a = CallFindScu([ '-S', '-k', '8,52=STUDY', '-k', sex ]) |
|
2444c9a7c422
test_bitbucket_issue_90
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
207
diff
changeset
|
4362 return len(re.findall('\(0010,0040\)', a)) |
|
2444c9a7c422
test_bitbucket_issue_90
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
207
diff
changeset
|
4363 |
|
2444c9a7c422
test_bitbucket_issue_90
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
207
diff
changeset
|
4364 def CountRestResults(sex): |
|
2444c9a7c422
test_bitbucket_issue_90
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
207
diff
changeset
|
4365 a = DoPost(_REMOTE, '/tools/find', |
|
2444c9a7c422
test_bitbucket_issue_90
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
207
diff
changeset
|
4366 { 'Level' : 'Study', 'Query' : { 'PatientSex' : sex } }) |
|
2444c9a7c422
test_bitbucket_issue_90
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
207
diff
changeset
|
4367 return len(a) |
|
2444c9a7c422
test_bitbucket_issue_90
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
207
diff
changeset
|
4368 |
|
2444c9a7c422
test_bitbucket_issue_90
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
207
diff
changeset
|
4369 # Just like the "CR000000.dcm" of the issue, the test image |
|
2444c9a7c422
test_bitbucket_issue_90
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
207
diff
changeset
|
4370 # "DummyCT.dcm" has the tag PatientSex (0010,0040) unset |
|
2444c9a7c422
test_bitbucket_issue_90
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
207
diff
changeset
|
4371 UploadInstance(_REMOTE, 'DummyCT.dcm') |
|
2444c9a7c422
test_bitbucket_issue_90
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
207
diff
changeset
|
4372 |
|
2444c9a7c422
test_bitbucket_issue_90
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
207
diff
changeset
|
4373 # Test that the behavior of DICOM vs. REST API is consistent on missing tags |
|
2444c9a7c422
test_bitbucket_issue_90
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
207
diff
changeset
|
4374 |
|
2444c9a7c422
test_bitbucket_issue_90
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
207
diff
changeset
|
4375 # In wildcard constraints, the patient sex must be set for a match to occur |
|
2444c9a7c422
test_bitbucket_issue_90
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
207
diff
changeset
|
4376 self.assertEqual(0, CountDicomResults('PatientSex=*')) |
|
2444c9a7c422
test_bitbucket_issue_90
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
207
diff
changeset
|
4377 self.assertEqual(0, CountRestResults('*')) |
|
2444c9a7c422
test_bitbucket_issue_90
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
207
diff
changeset
|
4378 |
|
2444c9a7c422
test_bitbucket_issue_90
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
207
diff
changeset
|
4379 # In single-valued constraints, the patient sex must be set |
|
2444c9a7c422
test_bitbucket_issue_90
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
207
diff
changeset
|
4380 self.assertEqual(0, CountDicomResults('PatientSex=F')) |
|
2444c9a7c422
test_bitbucket_issue_90
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
207
diff
changeset
|
4381 self.assertEqual(0, CountDicomResults('PatientSex=M')) |
|
2444c9a7c422
test_bitbucket_issue_90
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
207
diff
changeset
|
4382 self.assertEqual(0, CountRestResults('F')) |
|
2444c9a7c422
test_bitbucket_issue_90
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
207
diff
changeset
|
4383 self.assertEqual(0, CountRestResults('M')) |
|
2444c9a7c422
test_bitbucket_issue_90
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
207
diff
changeset
|
4384 |
|
2444c9a7c422
test_bitbucket_issue_90
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
207
diff
changeset
|
4385 # Empty constraints are only used to ask the actual value of |
|
2444c9a7c422
test_bitbucket_issue_90
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
207
diff
changeset
|
4386 # the tag to be added to the *answer*. The tag should not used |
|
2444c9a7c422
test_bitbucket_issue_90
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
207
diff
changeset
|
4387 # as a filter in such a situation. |
|
2444c9a7c422
test_bitbucket_issue_90
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
207
diff
changeset
|
4388 self.assertEqual(1, CountDicomResults('PatientSex')) |
|
2444c9a7c422
test_bitbucket_issue_90
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
207
diff
changeset
|
4389 self.assertEqual(1, CountDicomResults('PatientSex=')) |
|
2444c9a7c422
test_bitbucket_issue_90
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
207
diff
changeset
|
4390 self.assertEqual(1, CountRestResults('')) # This check fails on Orthanc <= 1.5.2 (issue 90) |
|
210
2c50c8f340c2
test_rest_modalities_in_study
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
208
diff
changeset
|
4391 |
|
2c50c8f340c2
test_rest_modalities_in_study
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
208
diff
changeset
|
4392 |
|
2c50c8f340c2
test_rest_modalities_in_study
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
208
diff
changeset
|
4393 def test_rest_modalities_in_study(self): |
|
2c50c8f340c2
test_rest_modalities_in_study
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
208
diff
changeset
|
4394 # Tests a regression that is present in Orthanc 1.5.2 and 1.5.3 |
|
2c50c8f340c2
test_rest_modalities_in_study
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
208
diff
changeset
|
4395 # https://groups.google.com/d/msg/orthanc-users/7lZyG3wpx-M/uOXzAzVCFwAJ |
|
2c50c8f340c2
test_rest_modalities_in_study
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
208
diff
changeset
|
4396 UploadInstance(_REMOTE, 'ColorTestImageJ.dcm') |
|
2c50c8f340c2
test_rest_modalities_in_study
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
208
diff
changeset
|
4397 |
|
2c50c8f340c2
test_rest_modalities_in_study
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
208
diff
changeset
|
4398 a = DoPost(_REMOTE, '/tools/find', { 'Level' : 'Study', |
|
2c50c8f340c2
test_rest_modalities_in_study
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
208
diff
changeset
|
4399 'Query' : { 'ModalitiesInStudy' : 'US' }}) |
|
2c50c8f340c2
test_rest_modalities_in_study
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
208
diff
changeset
|
4400 self.assertEqual(0, len(a)) |
|
2c50c8f340c2
test_rest_modalities_in_study
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
208
diff
changeset
|
4401 |
|
2c50c8f340c2
test_rest_modalities_in_study
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
208
diff
changeset
|
4402 a = DoPost(_REMOTE, '/tools/find', { 'Level' : 'Study', |
|
2c50c8f340c2
test_rest_modalities_in_study
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
208
diff
changeset
|
4403 'Query' : { 'ModalitiesInStudy' : 'US\\CT' }}) |
|
2c50c8f340c2
test_rest_modalities_in_study
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
208
diff
changeset
|
4404 self.assertEqual(1, len(a)) |
|
2c50c8f340c2
test_rest_modalities_in_study
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
208
diff
changeset
|
4405 |
|
2c50c8f340c2
test_rest_modalities_in_study
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
208
diff
changeset
|
4406 a = DoPost(_REMOTE, '/tools/find', { 'Level' : 'Study', |
|
2c50c8f340c2
test_rest_modalities_in_study
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
208
diff
changeset
|
4407 'Query' : { 'ModalitiesInStudy' : 'CT' }}) |
|
2c50c8f340c2
test_rest_modalities_in_study
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
208
diff
changeset
|
4408 self.assertEqual(1, len(a)) |
| 211 | 4409 |
| 4410 | |
| 4411 def test_series_status(self): | |
| 4412 def HasCompletedInChanges(): | |
| 4413 for c in DoGet(_REMOTE, '/changes?limit=1000&since=0')['Changes']: | |
| 4414 if c['ChangeType'] == 'CompletedSeries': | |
| 4415 return True; | |
| 4416 | |
| 4417 return False | |
| 4418 | |
| 4419 UploadInstance(_REMOTE, 'Knix/Loc/IM-0001-0001.dcm') | |
| 4420 series = '8ea120d7-5057d919-837dfbcc-ccd04e0f-7f3a94aa' | |
| 4421 self.assertEqual('Unknown', DoGet(_REMOTE, '/series/%s' % series)['Status']) | |
| 4422 self.assertFalse(HasCompletedInChanges()) | |
| 4423 | |
| 4424 series = 'ce25ecb6-ed79d004-5ae43ca7-3fc89bc5-67511614' | |
| 4425 | |
| 4426 for i in range(3): | |
| 4427 UploadInstance(_REMOTE, 'Series/Lena-%d.dcm' % (i + 1)) | |
| 4428 self.assertEqual('Missing', DoGet(_REMOTE, '/series/%s' % series)['Status']) | |
| 4429 self.assertFalse(HasCompletedInChanges()) | |
| 4430 | |
| 4431 UploadInstance(_REMOTE, 'Series/Lena-4.dcm') | |
| 4432 self.assertEqual('Complete', DoGet(_REMOTE, '/series/%s' % series)['Status']) | |
| 4433 self.assertTrue(HasCompletedInChanges()) | |
| 4434 | |
| 4435 DoDelete(_REMOTE, '/changes') | |
| 4436 self.assertFalse(HasCompletedInChanges()) | |
| 4437 | |
| 4438 UploadInstance(_REMOTE, 'Series/Lena-5.dcm') | |
| 4439 self.assertEqual('Inconsistent', DoGet(_REMOTE, '/series/%s' % series)['Status']) | |
| 4440 self.assertFalse(HasCompletedInChanges()) | |
| 4441 | |
| 215 | 4442 |
| 4443 def test_dicomweb(self): | |
| 4444 def Compare(dicom, reference): | |
| 4445 a = UploadInstance(_REMOTE, dicom) ['ID'] | |
| 4446 b = DoGet(_REMOTE, '/instances/%s/file' % a, | |
| 4447 headers = { 'Accept' : 'application/dicom+json' }) | |
| 4448 with open(GetDatabasePath(reference), 'rb') as c: | |
| 4449 d = json.load(c) | |
| 220 | 4450 AssertAlmostEqualRecursive(self, d, b) |
| 215 | 4451 |
| 4452 Compare('DummyCT.dcm', 'DummyCT.json') | |
| 4453 Compare('MarekLatin2.dcm', 'MarekLatin2.json') | |
| 4454 Compare('HierarchicalAnonymization/StructuredReports/IM0', | |
| 4455 'HierarchicalAnonymization/StructuredReports/IM0.json') | |
| 217 | 4456 |
| 4457 | |
| 4458 def test_issue_95_encodings(self): | |
| 4459 # https://bitbucket.org/sjodogne/orthanc/issues/95/server-cant-support-chinese | |
| 4460 # Check out image: "../Database/Encodings/DavidClunie/charsettests.screenshot.png" | |
| 4461 | |
| 4462 # Very useful tool: "file2" from package "file-kanji" | |
| 4463 | |
| 4464 def GetPatientName(dicom): | |
| 4465 i = UploadInstance(_REMOTE, dicom) ['ID'] | |
| 4466 j = DoGet(_REMOTE, '/instances/%s/tags?simplify' % i) | |
| 4467 return j['PatientName'] | |
| 4468 | |
| 4469 def ComparePatientName(name, dicom): | |
| 4470 self.assertEqual(name, GetPatientName(dicom)) | |
| 4471 | |
| 4472 # gdcmraw -t 10,10 -i SCSFREN -o /tmp/tag && uconv -f ISO-IR-100 -t UTF-8 /tmp/tag && echo | |
| 4473 ComparePatientName(u'Buc^Jérôme', 'Encodings/DavidClunie/SCSFREN') | |
| 4474 | |
| 4475 # gdcmraw -t 10,10 -i SCSI2 -o /tmp/tag && uconv -f KOREAN -t UTF-8 /tmp/tag && echo | |
| 4476 ComparePatientName(u'Hong^Gildong=洪^吉洞=홍^길동', 'Encodings/DavidClunie/SCSI2') # Since Orthanc 1.5.5 | |
| 4477 | |
| 4478 # gdcmraw -t 10,10 -i SCSX2 -o /tmp/tag && uconv -f GB18030 -t UTF-8 /tmp/tag && echo | |
| 4479 ComparePatientName(u'Wang^XiaoDong=王^小东=', 'Encodings/DavidClunie/SCSX2') | |
| 4480 | |
| 4481 # gdcmraw -t 10,10 -i SCSX1 -o /tmp/tag && cat /tmp/tag && echo | |
| 4482 ComparePatientName(u'Wang^XiaoDong=王^小東=', 'Encodings/DavidClunie/SCSX1') | |
| 4483 | |
| 4484 # gdcmraw -t 10,10 -i SCSH31 -o /tmp/tag && uconv -f JIS -t UTF-8 /tmp/tag && echo | |
| 4485 ComparePatientName(u'Yamada^Tarou=山田^太郎=やまだ^たろう', 'Encodings/DavidClunie/SCSH31') | |
| 4486 | |
| 4487 # gdcmraw -t 10,10 -i SCSGERM -o /tmp/tag && uconv -f ISO-IR-100 -t UTF-8 /tmp/tag && echo | |
| 4488 ComparePatientName(u'Äneas^Rüdiger', 'Encodings/DavidClunie/SCSGERM') | |
| 4489 | |
| 4490 # gdcmraw -t 10,10 -i SCSGREEK -o /tmp/tag && uconv -f ISO-IR-126 -t UTF-8 /tmp/tag && echo | |
| 4491 ComparePatientName(u'Διονυσιος', 'Encodings/DavidClunie/SCSGREEK') | |
| 4492 | |
| 4493 # gdcmraw -t 10,10 -i SCSRUSS -o /tmp/tag && uconv -f ISO-IR-144 -t UTF-8 /tmp/tag && echo | |
| 4494 ComparePatientName(u'Люкceмбypг', 'Encodings/DavidClunie/SCSRUSS') | |
| 4495 | |
| 4496 # gdcmraw -t 10,10 -i SCSHBRW -o /tmp/tag && uconv -f ISO-IR-138 -t UTF-8 /tmp/tag && echo | |
| 4497 # NB: Hebrew is a right-to-left encoding, copying/pasting from | |
| 4498 # Linux console into Emacs automatically reverse the string | |
| 4499 ComparePatientName(u'שרון^דבורה', 'Encodings/DavidClunie/SCSHBRW') | |
| 4500 | |
| 4501 # gdcmraw -t 10,10 -i SCSARAB -o /tmp/tag && uconv -f ISO-IR-127 -t UTF-8 /tmp/tag && echo | |
| 4502 # NB: Right-to-left as for Hebrew (SCSHBRW), and the Ubuntu console can't display such | |
| 4503 # characters by default, but copy/paste works with Emacs | |
| 4504 ComparePatientName(u'قباني^لنزار', 'Encodings/DavidClunie/SCSARAB') | |
| 4505 | |
| 4506 # SCSH32: This SpecificCharacterSet is composed of 2 | |
| 4507 # codepages: "ISO 2022 IR 13" (i.e. "SHIFT_JIS") until the | |
| 4508 # first equal, then "ISO 2022 IR 87" (i.e. "JIS") for the | |
| 4509 # remainer. Orthanc only takes into consideration the first | |
| 4510 # codepage: This is a limitation. | |
| 4511 # gdcmraw -t 10,10 -i SCSH32 -o /tmp/tag && cut -d '=' -f 1 /tmp/tag | uconv -f SHIFT_JIS -t UTF-8 | |
| 4512 self.assertTrue(GetPatientName('Encodings/DavidClunie/SCSH32').startswith(u'ﾔﾏﾀﾞ^ﾀﾛｳ=')) | |
|
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4513 |
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4514 |
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4515 def test_findscu_missing_tags(self): |
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4516 # dcmodify -e Rows DummyCTInvalidRows.dcm -gst -gse -gin |
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4517 UploadInstance(_REMOTE, 'DummyCT.dcm') |
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4518 UploadInstance(_REMOTE, 'DummyCTInvalidRows.dcm') |
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4519 |
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4520 i = CallFindScu([ '-k', '0008,0052=IMAGES', '-k', 'Rows', '-k', 'PatientName' ]) |
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4521 |
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4522 # We have 2 instances... |
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4523 patientNames = re.findall('\(0010,0010\).*?\[(.*?)\]', i) |
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4524 self.assertEqual(2, len(patientNames)) |
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4525 self.assertEqual('KNIX', patientNames[0]) |
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4526 self.assertEqual('KNIX', patientNames[1]) |
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4527 |
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4528 # ...but only 1 value for the "Rows" tag |
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4529 rows = re.findall('\(0028,0010\) US ([0-9]+)', i) |
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4530 self.assertEqual(1, len(rows)) |
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4531 self.assertEqual('512', rows[0]) |
|
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4532 |
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4533 |
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4534 |
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4535 def test_bitbucket_issue_131(self): |
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4536 # "Orthanc PACS silently fails to C-MOVE due to duplicate |
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4537 # StudyInstanceUID in it's database." |
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4538 # https://bitbucket.org/sjodogne/orthanc/issues/131/orthanc-pacs-silently-fails-to-c-move-due |
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4539 |
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4540 # Insert 2 instances, with the same StudyInstanceUID, but with |
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4541 # different patient IDs. Orthanc will create 2 distincts |
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4542 # patients, and the hierarchy of resources above the two |
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4543 # instances will be fully disjoint. |
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4544 UploadInstance(_REMOTE, 'PatientIdsCollision/Issue131-a.dcm') |
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4545 UploadInstance(_REMOTE, 'PatientIdsCollision/Issue131-b.dcm') |
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4546 |
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4547 self.assertEqual(2, len(DoGet(_REMOTE, '/patients'))) |
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4548 self.assertEqual(2, len(DoGet(_REMOTE, '/studies'))) |
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4549 |
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4550 a = DoPost(_REMOTE, '/modalities/self/query', { |
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4551 'Level' : 'Study', |
|
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4552 'Query' : {"PatientID": "A" }})['ID'] |
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4553 |
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4554 # 1 study is matched |
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4555 self.assertEqual(1, len(DoGet(_REMOTE, '/queries/%s/answers' % a))) |
|
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|
4556 |
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|
4557 self.assertEqual(0, len(DoGet(_LOCAL, '/instances'))) |
| 220 | 4558 WaitAllNewJobsDone(_REMOTE, lambda: DoPost |
| 4559 (_REMOTE, '/queries/%s/retrieve' % a, | |
| 4560 '{"TargetAet":"ORTHANCTEST","Synchronous":false}')) | |
|
219
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|
4561 |
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|
4562 # The two studies are matched, as we made the request at the |
|
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4563 # Study level, thus the shared StudyInstanceUID is used as the key |
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|
4564 self.assertEqual(2, len(DoGet(_LOCAL, '/instances'))) |
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|
4565 |
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|
4566 |
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|
4567 # Match the 2 studies |
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4568 a = DoPost(_REMOTE, '/modalities/self/query', { |
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|
4569 'Level' : 'Study', |
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|
4570 'Query' : {"StudyInstanceUID": "2.25.123" }})['ID'] |
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4571 self.assertEqual(2, len(DoGet(_REMOTE, '/queries/%s/answers' % a))) |
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4572 DropOrthanc(_LOCAL) |
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|
4573 self.assertEqual(0, len(DoGet(_LOCAL, '/instances'))) |
| 220 | 4574 WaitAllNewJobsDone(_REMOTE, lambda: DoPost |
| 4575 (_REMOTE, '/queries/%s/retrieve' % a, | |
| 4576 '{"TargetAet":"ORTHANCTEST","Synchronous":false}')) | |
|
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4577 self.assertEqual(2, len(DoGet(_LOCAL, '/instances'))) |
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4578 |
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|
4579 |
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4580 # Same test, at the patient level => only 1 instance is transfered |
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4581 a = DoPost(_REMOTE, '/modalities/self/query', { |
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4582 'Level' : 'Patient', |
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4583 'Query' : {"PatientID": "A" }})['ID'] |
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4584 self.assertEqual(1, len(DoGet(_REMOTE, '/queries/%s/answers' % a))) |
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4585 DropOrthanc(_LOCAL) |
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4586 self.assertEqual(0, len(DoGet(_LOCAL, '/instances'))) |
| 220 | 4587 WaitAllNewJobsDone(_REMOTE, lambda: DoPost |
| 4588 (_REMOTE, '/queries/%s/retrieve' % a, | |
| 4589 '{"TargetAet":"ORTHANCTEST","Synchronous":false}')) | |
|
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4590 self.assertEqual(1, len(DoGet(_LOCAL, '/instances'))) |
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|
4591 |
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4592 |
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4593 # Same test, at the series level => only 1 instance is transfered |
|
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4594 a = DoPost(_REMOTE, '/modalities/self/query', { |
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4595 'Level' : 'Series', |
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diff
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4596 'Query' : {"PatientID": "A" }})['ID'] |
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diff
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4597 self.assertEqual(1, len(DoGet(_REMOTE, '/queries/%s/answers' % a))) |
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4598 DropOrthanc(_LOCAL) |
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4599 self.assertEqual(0, len(DoGet(_LOCAL, '/instances'))) |
| 220 | 4600 WaitAllNewJobsDone(_REMOTE, lambda: DoPost |
| 4601 (_REMOTE, '/queries/%s/retrieve' % a, | |
| 4602 '{"TargetAet":"ORTHANCTEST","Synchronous":false}')) | |
|
219
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diff
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|
4603 self.assertEqual(1, len(DoGet(_LOCAL, '/instances'))) |
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4604 |
|
233
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diff
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4605 |
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diff
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4606 def test_bitbucket_issue_136(self): |
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diff
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|
4607 UploadInstance(_REMOTE, 'Issue137.dcm') |
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diff
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4608 i = CallFindScu([ '-k', '0008,0052=STUDY', '-k', '0010,0010', '-k', '0028,0010', '-k', '0040,0275' ]) |
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diff
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|
4609 patientNames = re.findall('\(0010,0010\).*?\[(.*?)\]', i) |
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diff
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|
4610 self.assertEqual(1, len(patientNames)) |
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diff
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|
4611 self.assertEqual('John Doe', patientNames[0]) |
|
234
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test_anonymize_relationships_4
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diff
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4612 |
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4613 |
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diff
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4614 def test_anonymize_relationships_4(self): |
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4615 # https://groups.google.com/d/msg/orthanc-users/UkcsqyTpszE/bXUpzU0vAAAJ |
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diff
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4616 sr1 = UploadInstance(_REMOTE, 'HierarchicalAnonymization/2019-03-28/CR000000.dcm')['ID'] |
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diff
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4617 mr1 = UploadInstance(_REMOTE, 'HierarchicalAnonymization/2019-03-28/PR000000.dcm')['ID'] |
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4618 study = '0c923249-d52121a9-2b7167f7-6b85534f-0943697e' |
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4619 |
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test_anonymize_relationships_4
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4620 anonymized = DoPost(_REMOTE, '/studies/%s/anonymize' % study, '{}', |
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4621 'application/json')['ID'] |
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4622 series = DoGet(_REMOTE, '/studies/%s/series' % anonymized) |
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4623 self.assertEqual(2, len(series)) |
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4624 |
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4625 cr = list(filter(lambda x: x['MainDicomTags']['Modality'] == 'CR', series)) |
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4626 pr = list(filter(lambda x: x['MainDicomTags']['Modality'] == 'PR', series)) |
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4627 self.assertEqual(1, len(cr)) |
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4628 self.assertEqual(1, len(pr)) |
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4629 self.assertEqual(1, len(cr[0]['Instances'])) |
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4630 self.assertEqual(1, len(pr[0]['Instances'])) |
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4631 |
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4632 crinstance = DoGet(_REMOTE, '/instances/%s' % cr[0]['Instances'][0]) |
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4633 tags = DoGet(_REMOTE, '/instances/%s/tags?short' % pr[0]['Instances'][0]) |
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4634 |
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4635 self.assertEqual(tags['0008,1115'][0]['0008,1140'][0]['0008,1155'], |
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4636 crinstance['MainDicomTags']['SOPInstanceUID']) |
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4637 self.assertEqual(tags['0008,1115'][0]['0008,1140'][0]['0008,1150'], |
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4638 '1.2.840.10008.5.1.4.1.1.1') # SOP class for CR Image Storage |
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4639 |
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|
4640 # This fails on Orthanc <= 1.5.6 |
|
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4641 self.assertEqual(tags['0008,1115'][0]['0020,000e'], |
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4642 cr[0]['MainDicomTags']['SeriesInstanceUID']) |