annotate Tests/Tests.py @ 53:e0d1ee04119f

test_ordered_slices
author Sebastien Jodogne <s.jodogne@gmail.com>
date Tue, 13 Oct 2015 16:10:46 +0200
parents 7c08e542db23
children c5f8a6b0d85e
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1 #!/usr/bin/env python
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2 # -*- coding: utf-8 -*-
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3
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4
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5 # Orthanc - A Lightweight, RESTful DICOM Store
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6 # Copyright (C) 2012-2015 Sebastien Jodogne, Medical Physics
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7 # Department, University Hospital of Liege, Belgium
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8 #
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9 # This program is free software: you can redistribute it and/or
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10 # modify it under the terms of the GNU General Public License as
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11 # published by the Free Software Foundation, either version 3 of the
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12 # License, or (at your option) any later version.
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13 #
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14 # This program is distributed in the hope that it will be useful, but
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15 # WITHOUT ANY WARRANTY; without even the implied warranty of
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16 # MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU
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17 # General Public License for more details.
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18 #
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19 # You should have received a copy of the GNU General Public License
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20 # along with this program. If not, see <http://www.gnu.org/licenses/>.
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23 import tempfile
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24 import unittest
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25 import base64
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27 from PIL import ImageChops
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28 from Toolbox import *
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29 from xml.dom import minidom
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30
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31 _LOCAL = None
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32 _REMOTE = None
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35 def SetOrthancParameters(local, remote):
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36 global _LOCAL, _REMOTE
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37 _LOCAL = local
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38 _REMOTE = remote
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41 def ExtractDicomTags(rawDicom, tags):
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42 with tempfile.NamedTemporaryFile(delete = True) as f:
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43 f.write(rawDicom)
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44 f.flush()
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45 data = subprocess.check_output([ FindExecutable('dcm2xml'), f.name ])
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46
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47 result = []
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48 for tag in tags:
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49 match = re.search('<element[^>]+name="%s">([^>]*)</element>' % tag, data)
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50 if match == None:
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51 result.append('')
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52 else:
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53 result.append(match.group(1))
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54
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55 return result
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57
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58 def InstallLuaScript(path):
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59 with open(GetDatabasePath(path), 'r') as f:
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60 DoPost(_REMOTE, '/tools/execute-script', f.read(), 'application/lua')
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63 def UninstallLuaCallbacks():
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64 DoPost(_REMOTE, '/tools/execute-script', 'function OnStoredInstance() end', 'application/lua')
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65 InstallLuaScript('Lua/TransferSyntaxEnable.lua')
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67
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68 def CompareLists(a, b):
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69 if len(a) != len(b):
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70 return False
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71
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72 for i in range(len(a)):
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73 d = a[i] - b[i]
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74 if abs(d) >= 0.51: # Add some tolerance for rounding errors
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75 return False
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76
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77 return True
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78
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79
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80
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81 def GenerateTestSequence():
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82 return [
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83 {
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84 'StudyDescription': 'Hello^',
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85 'ReferencedStudySequence' : [
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86 {
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87 'StudyDescription': 'Toto',
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88 },
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89 {
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90 'StudyDescription': 'Tata',
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91 },
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92 ]
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93 },
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94 {
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95 'StudyDescription': 'Sébastien^',
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96 'StudyDate' : '19700202',
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97 }
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98 ]
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99
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101
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102
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103 class Orthanc(unittest.TestCase):
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104 def setUp(self):
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105 DropOrthanc(_LOCAL)
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106 DropOrthanc(_REMOTE)
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107 UninstallLuaCallbacks()
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108 #print "In test", self._testMethodName
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109
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110 def AssertSameImages(self, truth, url):
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111 im = GetImage(_REMOTE, url)
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112 self.assertTrue(CompareLists(truth, im.getdata()))
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113
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114
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115 def test_system(self):
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116 self.assertTrue('Version' in DoGet(_REMOTE, '/system'))
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117 self.assertEqual('0', DoGet(_REMOTE, '/statistics')['TotalDiskSize'])
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118 self.assertEqual('0', DoGet(_REMOTE, '/statistics')['TotalUncompressedSize'])
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119
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120 def test_upload(self):
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121 u = UploadInstance(_REMOTE, 'DummyCT.dcm')
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122 self.assertEqual('Success', u['Status'])
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123 u = UploadInstance(_REMOTE, 'DummyCT.dcm')
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124 self.assertEqual('AlreadyStored', u['Status'])
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125 self.assertEqual(1, len(DoGet(_REMOTE, '/patients')))
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126 self.assertEqual(1, len(DoGet(_REMOTE, '/studies')))
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127 self.assertEqual(1, len(DoGet(_REMOTE, '/series')))
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128 self.assertEqual(1, len(DoGet(_REMOTE, '/instances')))
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129
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130 i = DoGet(_REMOTE, '/instances/%s/simplified-tags' % u['ID'])
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131 self.assertEqual('20070101', i['StudyDate'])
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132
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133
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134 def test_upload_2(self):
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135 i = UploadInstance(_REMOTE, 'DummyCT.dcm')['ID']
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136 instance = DoGet(_REMOTE, '/instances/%s' % i)
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137 self.assertEqual(i, instance['ID'])
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138 self.assertEqual('1.2.840.113619.2.176.2025.1499492.7040.1171286242.109',
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139 instance['MainDicomTags']['SOPInstanceUID'])
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140
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141 series = DoGet(_REMOTE, '/series/%s' % instance['ParentSeries'])
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142 self.assertEqual('1.2.840.113619.2.176.2025.1499492.7391.1171285944.394',
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143 series['MainDicomTags']['SeriesInstanceUID'])
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144
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145 study = DoGet(_REMOTE, '/studies/%s' % series['ParentStudy'])
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146 self.assertEqual('1.2.840.113619.2.176.2025.1499492.7391.1171285944.390',
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147 study['MainDicomTags']['StudyInstanceUID'])
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148
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149 patient = DoGet(_REMOTE, '/patients/%s' % study['ParentPatient'])
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150 self.assertEqual('ozp00SjY2xG',
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151 patient['MainDicomTags']['PatientID'])
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Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
152
2dbba2e6aa4b reorganization
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
153 dicom = DoGet(_REMOTE, '/instances/%s/file' % instance['ID'])
2dbba2e6aa4b reorganization
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
154 self.assertEqual(2472, len(dicom))
2dbba2e6aa4b reorganization
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
155 self.assertEqual('3e29b869978b6db4886355a2b1132124', ComputeMD5(dicom))
2dbba2e6aa4b reorganization
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
156 self.assertEqual(1, len(DoGet(_REMOTE, '/instances/%s/frames' % i)))
2dbba2e6aa4b reorganization
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
157 self.assertEqual('TWINOW', DoGet(_REMOTE, '/instances/%s/simplified-tags' % i)['StationName'])
2dbba2e6aa4b reorganization
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
158 self.assertEqual('TWINOW', DoGet(_REMOTE, '/instances/%s/tags' % i)['0008,1010']['Value'])
2dbba2e6aa4b reorganization
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
159
2dbba2e6aa4b reorganization
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
160
5
19eb87a45685 test_images
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3
diff changeset
161 def test_images(self):
19eb87a45685 test_images
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3
diff changeset
162 i = UploadInstance(_REMOTE, 'Phenix/IM-0001-0001.dcm')['ID']
19eb87a45685 test_images
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3
diff changeset
163 self.assertEqual(1, len(DoGet(_REMOTE, '/instances/%s/frames' % i)))
3
2dbba2e6aa4b reorganization
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
164
5
19eb87a45685 test_images
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3
diff changeset
165 im = GetImage(_REMOTE, '/instances/%s/preview' % i)
19eb87a45685 test_images
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3
diff changeset
166 self.assertEqual("L", im.mode)
19eb87a45685 test_images
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3
diff changeset
167 self.assertEqual(512, im.size[0])
19eb87a45685 test_images
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3
diff changeset
168 self.assertEqual(358, im.size[1])
19eb87a45685 test_images
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3
diff changeset
169
19eb87a45685 test_images
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3
diff changeset
170 im = GetImage(_REMOTE, '/instances/%s/image-uint8' % i)
19eb87a45685 test_images
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3
diff changeset
171 self.assertEqual("L", im.mode)
19eb87a45685 test_images
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3
diff changeset
172 self.assertEqual(512, im.size[0])
19eb87a45685 test_images
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3
diff changeset
173 self.assertEqual(358, im.size[1])
19eb87a45685 test_images
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3
diff changeset
174
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Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3
diff changeset
175 im = GetImage(_REMOTE, '/instances/%s/image-uint16' % i)
19eb87a45685 test_images
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3
diff changeset
176 self.assertEqual(512, im.size[0])
19eb87a45685 test_images
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3
diff changeset
177 self.assertEqual(358, im.size[1])
19eb87a45685 test_images
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3
diff changeset
178
19eb87a45685 test_images
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3
diff changeset
179 im = GetImage(_REMOTE, '/instances/%s/frames/0/preview' % i)
19eb87a45685 test_images
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3
diff changeset
180 self.assertEqual("L", im.mode)
19eb87a45685 test_images
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3
diff changeset
181 self.assertEqual(512, im.size[0])
19eb87a45685 test_images
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3
diff changeset
182 self.assertEqual(358, im.size[1])
19eb87a45685 test_images
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3
diff changeset
183
19eb87a45685 test_images
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3
diff changeset
184 im = GetImage(_REMOTE, '/instances/%s/frames/0/image-uint8' % i)
19eb87a45685 test_images
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3
diff changeset
185 self.assertEqual("L", im.mode)
19eb87a45685 test_images
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3
diff changeset
186 self.assertEqual(512, im.size[0])
19eb87a45685 test_images
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3
diff changeset
187 self.assertEqual(358, im.size[1])
19eb87a45685 test_images
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3
diff changeset
188
19eb87a45685 test_images
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3
diff changeset
189 im = GetImage(_REMOTE, '/instances/%s/frames/0/image-uint16' % i)
19eb87a45685 test_images
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3
diff changeset
190 self.assertEqual(512, im.size[0])
19eb87a45685 test_images
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3
diff changeset
191 self.assertEqual(358, im.size[1])
19eb87a45685 test_images
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3
diff changeset
192
6
6d645b3011e1 test_hierarchy
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 5
diff changeset
193
6d645b3011e1 test_hierarchy
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 5
diff changeset
194 def test_hierarchy(self):
6d645b3011e1 test_hierarchy
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 5
diff changeset
195 UploadFolder(_REMOTE, 'Brainix/Epi')
6d645b3011e1 test_hierarchy
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 5
diff changeset
196 UploadFolder(_REMOTE, 'Brainix/Flair')
6d645b3011e1 test_hierarchy
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 5
diff changeset
197 UploadFolder(_REMOTE, 'Knee/T1')
6d645b3011e1 test_hierarchy
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 5
diff changeset
198 UploadFolder(_REMOTE, 'Knee/T2')
6d645b3011e1 test_hierarchy
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 5
diff changeset
199
6d645b3011e1 test_hierarchy
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 5
diff changeset
200 p = DoGet(_REMOTE, '/patients')
6d645b3011e1 test_hierarchy
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 5
diff changeset
201 s = DoGet(_REMOTE, '/studies')
6d645b3011e1 test_hierarchy
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 5
diff changeset
202 t = DoGet(_REMOTE, '/series')
6d645b3011e1 test_hierarchy
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 5
diff changeset
203 self.assertEqual(2, len(p))
6d645b3011e1 test_hierarchy
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 5
diff changeset
204 self.assertEqual(2, len(s))
6d645b3011e1 test_hierarchy
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 5
diff changeset
205 self.assertEqual(4, len(t))
6d645b3011e1 test_hierarchy
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 5
diff changeset
206 self.assertEqual(94, len(DoGet(_REMOTE, '/instances')))
6d645b3011e1 test_hierarchy
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 5
diff changeset
207
6d645b3011e1 test_hierarchy
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 5
diff changeset
208 brainixPatient = '16738bc3-e47ed42a-43ce044c-a3414a45-cb069bd0'
6d645b3011e1 test_hierarchy
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 5
diff changeset
209 brainixStudy = '27f7126f-4f66fb14-03f4081b-f9341db2-53925988'
6d645b3011e1 test_hierarchy
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 5
diff changeset
210 brainixEpi = '2ac1316d-3e432022-62eabff2-c59f5475-9b1ac3f8'
6d645b3011e1 test_hierarchy
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 5
diff changeset
211 brainixFlair = '1e2c125c-411b8e86-3f4fe68e-a7584dd3-c6da78f0'
6d645b3011e1 test_hierarchy
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 5
diff changeset
212
6d645b3011e1 test_hierarchy
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 5
diff changeset
213 kneePatient = 'ca29faea-b6a0e17f-067743a1-8b778011-a48b2a17'
6d645b3011e1 test_hierarchy
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 5
diff changeset
214 kneeStudy = '0a9b3153-2512774b-2d9580de-1fc3dcf6-3bd83918'
6d645b3011e1 test_hierarchy
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 5
diff changeset
215 kneeT1 = '6de73705-c4e65c1b-9d9ea1b5-cabcd8e7-f15e4285'
6d645b3011e1 test_hierarchy
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 5
diff changeset
216 kneeT2 = 'bbf7a453-0d34251a-03663b55-46bb31b9-ffd74c59'
6d645b3011e1 test_hierarchy
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 5
diff changeset
217
6d645b3011e1 test_hierarchy
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 5
diff changeset
218 self.assertTrue(brainixPatient in p)
6d645b3011e1 test_hierarchy
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 5
diff changeset
219 self.assertTrue(kneePatient in p)
6d645b3011e1 test_hierarchy
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 5
diff changeset
220 self.assertTrue(brainixStudy in s)
6d645b3011e1 test_hierarchy
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 5
diff changeset
221 self.assertTrue(kneeStudy in s)
6d645b3011e1 test_hierarchy
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 5
diff changeset
222 self.assertTrue(brainixEpi in t)
6d645b3011e1 test_hierarchy
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 5
diff changeset
223 self.assertTrue(brainixFlair in t)
6d645b3011e1 test_hierarchy
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 5
diff changeset
224 self.assertTrue(kneeT1 in t)
6d645b3011e1 test_hierarchy
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 5
diff changeset
225 self.assertTrue(kneeT2 in t)
6d645b3011e1 test_hierarchy
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 5
diff changeset
226
6d645b3011e1 test_hierarchy
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 5
diff changeset
227 self.assertEqual(44, len(DoGet(_REMOTE, '/patients/%s/instances' % brainixPatient)))
6d645b3011e1 test_hierarchy
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 5
diff changeset
228 self.assertEqual(2, len(DoGet(_REMOTE, '/patients/%s/series' % brainixPatient)))
6d645b3011e1 test_hierarchy
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 5
diff changeset
229 self.assertEqual(1, len(DoGet(_REMOTE, '/patients/%s/studies' % brainixPatient)))
6d645b3011e1 test_hierarchy
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 5
diff changeset
230
6d645b3011e1 test_hierarchy
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 5
diff changeset
231 self.assertEqual(50, len(DoGet(_REMOTE, '/patients/%s/instances' % kneePatient)))
6d645b3011e1 test_hierarchy
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 5
diff changeset
232 self.assertEqual(2, len(DoGet(_REMOTE, '/patients/%s/series' % kneePatient)))
6d645b3011e1 test_hierarchy
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 5
diff changeset
233 self.assertEqual(1, len(DoGet(_REMOTE, '/patients/%s/studies' % kneePatient)))
6d645b3011e1 test_hierarchy
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 5
diff changeset
234
6d645b3011e1 test_hierarchy
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 5
diff changeset
235 self.assertEqual(2, len(DoGet(_REMOTE, '/studies/%s/series' % brainixStudy)))
6d645b3011e1 test_hierarchy
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 5
diff changeset
236 self.assertEqual(44, len(DoGet(_REMOTE, '/studies/%s/instances' % brainixStudy)))
6d645b3011e1 test_hierarchy
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 5
diff changeset
237
6d645b3011e1 test_hierarchy
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 5
diff changeset
238 self.assertEqual(2, len(DoGet(_REMOTE, '/studies/%s/series' % kneeStudy)))
6d645b3011e1 test_hierarchy
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 5
diff changeset
239 self.assertEqual(50, len(DoGet(_REMOTE, '/studies/%s/instances' % kneeStudy)))
6d645b3011e1 test_hierarchy
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 5
diff changeset
240
6d645b3011e1 test_hierarchy
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 5
diff changeset
241 self.assertEqual(22, len(DoGet(_REMOTE, '/series/%s/instances' % brainixEpi)))
6d645b3011e1 test_hierarchy
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 5
diff changeset
242 self.assertEqual(22, len(DoGet(_REMOTE, '/series/%s/instances' % brainixFlair)))
6d645b3011e1 test_hierarchy
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 5
diff changeset
243 self.assertEqual(24, len(DoGet(_REMOTE, '/series/%s/instances' % kneeT1)))
6d645b3011e1 test_hierarchy
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 5
diff changeset
244 self.assertEqual(26, len(DoGet(_REMOTE, '/series/%s/instances' % kneeT2)))
6d645b3011e1 test_hierarchy
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 5
diff changeset
245
6d645b3011e1 test_hierarchy
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 5
diff changeset
246 for patient in p:
6d645b3011e1 test_hierarchy
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 5
diff changeset
247 for study in DoGet(_REMOTE, '/patients/%s/studies' % patient):
6d645b3011e1 test_hierarchy
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 5
diff changeset
248 self.assertEqual(patient, study['ParentPatient'])
6d645b3011e1 test_hierarchy
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 5
diff changeset
249 for series in DoGet(_REMOTE, '/studies/%s/series' % study['ID']):
6d645b3011e1 test_hierarchy
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 5
diff changeset
250 self.assertEqual(study['ID'], series['ParentStudy'])
6d645b3011e1 test_hierarchy
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 5
diff changeset
251 for instance in DoGet(_REMOTE, '/series/%s/instances' % series['ID']):
6d645b3011e1 test_hierarchy
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 5
diff changeset
252 self.assertEqual(series['ID'], instance['ParentSeries'])
6d645b3011e1 test_hierarchy
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 5
diff changeset
253
6d645b3011e1 test_hierarchy
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 5
diff changeset
254 self.assertEqual(json.dumps(DoGet(_REMOTE, '/instances/%s/attachments/dicom-as-json/data' % instance['ID'])),
6d645b3011e1 test_hierarchy
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 5
diff changeset
255 json.dumps(DoGet(_REMOTE, '/instances/%s/tags' % instance['ID'])))
6d645b3011e1 test_hierarchy
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 5
diff changeset
256
6d645b3011e1 test_hierarchy
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 5
diff changeset
257
6d645b3011e1 test_hierarchy
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 5
diff changeset
258 r = DoDelete(_REMOTE, "/studies/%s" % brainixStudy)['RemainingAncestor']
6d645b3011e1 test_hierarchy
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 5
diff changeset
259 self.assertEqual(1, len(DoGet(_REMOTE, '/patients')))
6d645b3011e1 test_hierarchy
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 5
diff changeset
260 self.assertEqual(1, len(DoGet(_REMOTE, '/studies')))
6d645b3011e1 test_hierarchy
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 5
diff changeset
261 self.assertEqual(2, len(DoGet(_REMOTE, '/series')))
6d645b3011e1 test_hierarchy
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 5
diff changeset
262 self.assertEqual(50, len(DoGet(_REMOTE, '/instances')))
6d645b3011e1 test_hierarchy
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 5
diff changeset
263 self.assertEqual(None, r)
6d645b3011e1 test_hierarchy
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 5
diff changeset
264
6d645b3011e1 test_hierarchy
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 5
diff changeset
265 r = DoDelete(_REMOTE, "/series/%s" % kneeT2)['RemainingAncestor']
6d645b3011e1 test_hierarchy
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 5
diff changeset
266 self.assertEqual(1, len(DoGet(_REMOTE, '/patients')))
6d645b3011e1 test_hierarchy
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 5
diff changeset
267 self.assertEqual(1, len(DoGet(_REMOTE, '/studies')))
6d645b3011e1 test_hierarchy
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 5
diff changeset
268 self.assertEqual(1, len(DoGet(_REMOTE, '/series')))
6d645b3011e1 test_hierarchy
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 5
diff changeset
269 self.assertEqual(24, len(DoGet(_REMOTE, '/instances')))
6d645b3011e1 test_hierarchy
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 5
diff changeset
270 self.assertEqual('Study', r['Type'])
6d645b3011e1 test_hierarchy
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 5
diff changeset
271 self.assertEqual(kneeStudy, r['ID'])
6d645b3011e1 test_hierarchy
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 5
diff changeset
272
6d645b3011e1 test_hierarchy
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 5
diff changeset
273 r = DoDelete(_REMOTE, "/instances/%s" % DoGet(_REMOTE, '/instances')[0])['RemainingAncestor']
6d645b3011e1 test_hierarchy
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 5
diff changeset
274 self.assertEqual(1, len(DoGet(_REMOTE, '/patients')))
6d645b3011e1 test_hierarchy
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 5
diff changeset
275 self.assertEqual(1, len(DoGet(_REMOTE, '/studies')))
6d645b3011e1 test_hierarchy
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 5
diff changeset
276 self.assertEqual(1, len(DoGet(_REMOTE, '/series')))
6d645b3011e1 test_hierarchy
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 5
diff changeset
277 self.assertEqual(23, len(DoGet(_REMOTE, '/instances')))
6d645b3011e1 test_hierarchy
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 5
diff changeset
278 self.assertEqual('Series', r['Type'])
6d645b3011e1 test_hierarchy
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 5
diff changeset
279 self.assertEqual(kneeT1, r['ID'])
6d645b3011e1 test_hierarchy
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 5
diff changeset
280
6d645b3011e1 test_hierarchy
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 5
diff changeset
281 r = DoDelete(_REMOTE, "/patients/%s" % kneePatient)['RemainingAncestor']
6d645b3011e1 test_hierarchy
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 5
diff changeset
282 self.assertEqual(0, len(DoGet(_REMOTE, '/patients')))
6d645b3011e1 test_hierarchy
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 5
diff changeset
283 self.assertEqual(0, len(DoGet(_REMOTE, '/studies')))
6d645b3011e1 test_hierarchy
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 5
diff changeset
284 self.assertEqual(0, len(DoGet(_REMOTE, '/series')))
6d645b3011e1 test_hierarchy
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 5
diff changeset
285 self.assertEqual(0, len(DoGet(_REMOTE, '/instances')))
6d645b3011e1 test_hierarchy
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 5
diff changeset
286 self.assertEqual(None, r)
6d645b3011e1 test_hierarchy
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 5
diff changeset
287
6d645b3011e1 test_hierarchy
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 5
diff changeset
288 DropOrthanc(_REMOTE)
6d645b3011e1 test_hierarchy
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 5
diff changeset
289 self.assertEqual('0', DoGet(_REMOTE, '/statistics')['TotalDiskSize'])
6d645b3011e1 test_hierarchy
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 5
diff changeset
290 self.assertEqual('0', DoGet(_REMOTE, '/statistics')['TotalUncompressedSize'])
7
302f06f3bba2 test_multi_frame
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 6
diff changeset
291
302f06f3bba2 test_multi_frame
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 6
diff changeset
292
21
2a29bcff60a7 tests of image decoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 18
diff changeset
293 def test_multiframe(self):
7
302f06f3bba2 test_multi_frame
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 6
diff changeset
294 i = UploadInstance(_REMOTE, 'Multiframe.dcm')['ID']
302f06f3bba2 test_multi_frame
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 6
diff changeset
295 self.assertEqual(76, len(DoGet(_REMOTE, '/instances/%s/frames' % i)))
302f06f3bba2 test_multi_frame
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 6
diff changeset
296
302f06f3bba2 test_multi_frame
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 6
diff changeset
297 im = GetImage(_REMOTE, '/instances/%s/frames/0/preview' % i)
302f06f3bba2 test_multi_frame
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 6
diff changeset
298 self.assertEqual("L", im.mode)
302f06f3bba2 test_multi_frame
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 6
diff changeset
299 self.assertEqual(512, im.size[0])
302f06f3bba2 test_multi_frame
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 6
diff changeset
300 self.assertEqual(512, im.size[1])
302f06f3bba2 test_multi_frame
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 6
diff changeset
301
302f06f3bba2 test_multi_frame
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 6
diff changeset
302 DoGet(_REMOTE, '/instances/%s/frames/0/image-uint8' % i)
302f06f3bba2 test_multi_frame
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 6
diff changeset
303 DoGet(_REMOTE, '/instances/%s/frames/0/image-uint16' % i)
302f06f3bba2 test_multi_frame
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 6
diff changeset
304 DoGet(_REMOTE, '/instances/%s/frames/75/preview' % i)
302f06f3bba2 test_multi_frame
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 6
diff changeset
305 self.assertRaises(Exception, lambda: DoGet(_REMOTE, '/instances/%s/frames/aaa/preview' % i))
302f06f3bba2 test_multi_frame
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 6
diff changeset
306 self.assertRaises(Exception, lambda: DoGet(_REMOTE, '/instances/%s/frames/76/preview' % i))
302f06f3bba2 test_multi_frame
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 6
diff changeset
307
8
f8d781d1d267 test_changes, test_archive, test_media_archive
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 7
diff changeset
308
f8d781d1d267 test_changes, test_archive, test_media_archive
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 7
diff changeset
309 def test_changes(self):
f8d781d1d267 test_changes, test_archive, test_media_archive
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 7
diff changeset
310 # Check emptiness
f8d781d1d267 test_changes, test_archive, test_media_archive
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 7
diff changeset
311 c = DoGet(_REMOTE, '/changes')
f8d781d1d267 test_changes, test_archive, test_media_archive
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 7
diff changeset
312 self.assertEqual(0, len(c['Changes']))
f8d781d1d267 test_changes, test_archive, test_media_archive
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 7
diff changeset
313 self.assertEqual(0, c['Last'])
f8d781d1d267 test_changes, test_archive, test_media_archive
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 7
diff changeset
314 self.assertTrue(c['Done'])
f8d781d1d267 test_changes, test_archive, test_media_archive
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 7
diff changeset
315 c = DoGet(_REMOTE, '/changes?last')
f8d781d1d267 test_changes, test_archive, test_media_archive
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 7
diff changeset
316 self.assertEqual(0, len(c['Changes']))
f8d781d1d267 test_changes, test_archive, test_media_archive
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 7
diff changeset
317 self.assertEqual(0, c['Last'])
f8d781d1d267 test_changes, test_archive, test_media_archive
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 7
diff changeset
318 self.assertTrue(c['Done'])
f8d781d1d267 test_changes, test_archive, test_media_archive
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 7
diff changeset
319
f8d781d1d267 test_changes, test_archive, test_media_archive
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 7
diff changeset
320 # Add 1 instance
f8d781d1d267 test_changes, test_archive, test_media_archive
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 7
diff changeset
321 i = UploadInstance(_REMOTE, 'Brainix/Flair/IM-0001-0001.dcm')['ID']
f8d781d1d267 test_changes, test_archive, test_media_archive
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 7
diff changeset
322 c = DoGet(_REMOTE, '/changes')
f8d781d1d267 test_changes, test_archive, test_media_archive
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 7
diff changeset
323 begin = c['Last']
f8d781d1d267 test_changes, test_archive, test_media_archive
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 7
diff changeset
324 self.assertEqual(4, len(c['Changes']))
f8d781d1d267 test_changes, test_archive, test_media_archive
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 7
diff changeset
325 self.assertTrue(c['Done'])
f8d781d1d267 test_changes, test_archive, test_media_archive
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 7
diff changeset
326 self.assertEqual(c['Changes'][-1]['Seq'], c['Last'])
f8d781d1d267 test_changes, test_archive, test_media_archive
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 7
diff changeset
327
f8d781d1d267 test_changes, test_archive, test_media_archive
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 7
diff changeset
328 c = DoGet(_REMOTE, '/changes?last')
f8d781d1d267 test_changes, test_archive, test_media_archive
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 7
diff changeset
329 self.assertEqual(1, len(c['Changes']))
f8d781d1d267 test_changes, test_archive, test_media_archive
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 7
diff changeset
330 self.assertEqual(begin, c['Last'])
f8d781d1d267 test_changes, test_archive, test_media_archive
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 7
diff changeset
331 self.assertTrue(c['Done'])
f8d781d1d267 test_changes, test_archive, test_media_archive
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 7
diff changeset
332 c = DoGet(_REMOTE, '/changes?limit=1&since=' + str(begin - 1))
f8d781d1d267 test_changes, test_archive, test_media_archive
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 7
diff changeset
333 self.assertEqual(1, len(c['Changes']))
f8d781d1d267 test_changes, test_archive, test_media_archive
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 7
diff changeset
334 self.assertEqual(begin, c['Last'])
f8d781d1d267 test_changes, test_archive, test_media_archive
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 7
diff changeset
335 self.assertTrue(c['Done'])
f8d781d1d267 test_changes, test_archive, test_media_archive
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 7
diff changeset
336 c = DoGet(_REMOTE, '/changes?limit=1&since=' + str(begin - 2))
f8d781d1d267 test_changes, test_archive, test_media_archive
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 7
diff changeset
337 self.assertEqual(1, len(c['Changes']))
f8d781d1d267 test_changes, test_archive, test_media_archive
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 7
diff changeset
338 self.assertEqual(begin - 1, c['Last'])
f8d781d1d267 test_changes, test_archive, test_media_archive
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 7
diff changeset
339 self.assertFalse(c['Done'])
f8d781d1d267 test_changes, test_archive, test_media_archive
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 7
diff changeset
340 c = DoGet(_REMOTE, '/changes?limit=1&since=' + str(begin - 3))
f8d781d1d267 test_changes, test_archive, test_media_archive
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 7
diff changeset
341 self.assertEqual(1, len(c['Changes']))
f8d781d1d267 test_changes, test_archive, test_media_archive
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 7
diff changeset
342 self.assertEqual(begin - 2, c['Last'])
f8d781d1d267 test_changes, test_archive, test_media_archive
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 7
diff changeset
343 self.assertFalse(c['Done'])
f8d781d1d267 test_changes, test_archive, test_media_archive
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 7
diff changeset
344
f8d781d1d267 test_changes, test_archive, test_media_archive
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 7
diff changeset
345 UploadFolder(_REMOTE, 'Knee/T1')
f8d781d1d267 test_changes, test_archive, test_media_archive
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 7
diff changeset
346 UploadFolder(_REMOTE, 'Knee/T2')
f8d781d1d267 test_changes, test_archive, test_media_archive
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 7
diff changeset
347 since = begin
f8d781d1d267 test_changes, test_archive, test_media_archive
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 7
diff changeset
348 countPatients = 0
f8d781d1d267 test_changes, test_archive, test_media_archive
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 7
diff changeset
349 countStudies = 0
f8d781d1d267 test_changes, test_archive, test_media_archive
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 7
diff changeset
350 countSeries = 0
f8d781d1d267 test_changes, test_archive, test_media_archive
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 7
diff changeset
351 countInstances = 0
f8d781d1d267 test_changes, test_archive, test_media_archive
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 7
diff changeset
352 completed = 0
f8d781d1d267 test_changes, test_archive, test_media_archive
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 7
diff changeset
353 while True:
f8d781d1d267 test_changes, test_archive, test_media_archive
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 7
diff changeset
354 c = DoGet(_REMOTE, '/changes', { 'since' : since, 'limit' : 3 })
f8d781d1d267 test_changes, test_archive, test_media_archive
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 7
diff changeset
355 since = c['Last']
f8d781d1d267 test_changes, test_archive, test_media_archive
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 7
diff changeset
356 for i in c['Changes']:
f8d781d1d267 test_changes, test_archive, test_media_archive
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 7
diff changeset
357 if i['ResourceType'] == 'Instance':
f8d781d1d267 test_changes, test_archive, test_media_archive
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 7
diff changeset
358 countInstances += 1
f8d781d1d267 test_changes, test_archive, test_media_archive
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 7
diff changeset
359 if i['ResourceType'] == 'Patient':
f8d781d1d267 test_changes, test_archive, test_media_archive
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 7
diff changeset
360 countPatients += 1
f8d781d1d267 test_changes, test_archive, test_media_archive
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 7
diff changeset
361 if i['ResourceType'] == 'Study':
f8d781d1d267 test_changes, test_archive, test_media_archive
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 7
diff changeset
362 countStudies += 1
f8d781d1d267 test_changes, test_archive, test_media_archive
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 7
diff changeset
363 if i['ResourceType'] == 'Series':
f8d781d1d267 test_changes, test_archive, test_media_archive
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 7
diff changeset
364 countSeries += 1
f8d781d1d267 test_changes, test_archive, test_media_archive
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 7
diff changeset
365 if i['ChangeType'] == 'NewInstance':
f8d781d1d267 test_changes, test_archive, test_media_archive
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 7
diff changeset
366 countInstances += 1
f8d781d1d267 test_changes, test_archive, test_media_archive
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 7
diff changeset
367 if i['ChangeType'] == 'NewPatient':
f8d781d1d267 test_changes, test_archive, test_media_archive
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 7
diff changeset
368 countPatients += 1
f8d781d1d267 test_changes, test_archive, test_media_archive
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 7
diff changeset
369 if i['ChangeType'] == 'NewStudy':
f8d781d1d267 test_changes, test_archive, test_media_archive
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 7
diff changeset
370 countStudies += 1
f8d781d1d267 test_changes, test_archive, test_media_archive
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 7
diff changeset
371 if i['ChangeType'] == 'NewSeries':
f8d781d1d267 test_changes, test_archive, test_media_archive
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 7
diff changeset
372 countSeries += 1
f8d781d1d267 test_changes, test_archive, test_media_archive
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 7
diff changeset
373 if i['ChangeType'] == 'CompletedSeries':
f8d781d1d267 test_changes, test_archive, test_media_archive
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 7
diff changeset
374 completed += 1
f8d781d1d267 test_changes, test_archive, test_media_archive
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 7
diff changeset
375 self.assertTrue('ID' in i)
f8d781d1d267 test_changes, test_archive, test_media_archive
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 7
diff changeset
376 self.assertTrue('Path' in i)
f8d781d1d267 test_changes, test_archive, test_media_archive
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 7
diff changeset
377 self.assertTrue('Seq' in i)
f8d781d1d267 test_changes, test_archive, test_media_archive
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 7
diff changeset
378 if c['Done']:
f8d781d1d267 test_changes, test_archive, test_media_archive
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 7
diff changeset
379 break
f8d781d1d267 test_changes, test_archive, test_media_archive
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 7
diff changeset
380
f8d781d1d267 test_changes, test_archive, test_media_archive
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 7
diff changeset
381 self.assertEqual(2 * 50, countInstances)
f8d781d1d267 test_changes, test_archive, test_media_archive
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 7
diff changeset
382 self.assertEqual(2 * 1, countPatients)
f8d781d1d267 test_changes, test_archive, test_media_archive
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 7
diff changeset
383 self.assertEqual(2 * 1, countStudies)
f8d781d1d267 test_changes, test_archive, test_media_archive
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 7
diff changeset
384 self.assertEqual(2 * 2, countSeries)
f8d781d1d267 test_changes, test_archive, test_media_archive
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 7
diff changeset
385 self.assertEqual(0, completed)
f8d781d1d267 test_changes, test_archive, test_media_archive
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 7
diff changeset
386
f8d781d1d267 test_changes, test_archive, test_media_archive
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 7
diff changeset
387
f8d781d1d267 test_changes, test_archive, test_media_archive
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 7
diff changeset
388 def test_archive(self):
f8d781d1d267 test_changes, test_archive, test_media_archive
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 7
diff changeset
389 UploadInstance(_REMOTE, 'Knee/T1/IM-0001-0001.dcm')
f8d781d1d267 test_changes, test_archive, test_media_archive
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 7
diff changeset
390 UploadInstance(_REMOTE, 'Knee/T2/IM-0001-0001.dcm')
f8d781d1d267 test_changes, test_archive, test_media_archive
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 7
diff changeset
391
f8d781d1d267 test_changes, test_archive, test_media_archive
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 7
diff changeset
392 z = GetArchive(_REMOTE, '/patients/%s/archive' % DoGet(_REMOTE, '/patients')[0])
f8d781d1d267 test_changes, test_archive, test_media_archive
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 7
diff changeset
393 self.assertEqual(2, len(z.namelist()))
f8d781d1d267 test_changes, test_archive, test_media_archive
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 7
diff changeset
394
f8d781d1d267 test_changes, test_archive, test_media_archive
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 7
diff changeset
395 z = GetArchive(_REMOTE, '/studies/%s/archive' % DoGet(_REMOTE, '/studies')[0])
f8d781d1d267 test_changes, test_archive, test_media_archive
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 7
diff changeset
396 self.assertEqual(2, len(z.namelist()))
f8d781d1d267 test_changes, test_archive, test_media_archive
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 7
diff changeset
397
f8d781d1d267 test_changes, test_archive, test_media_archive
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 7
diff changeset
398 z = GetArchive(_REMOTE, '/series/%s/archive' % DoGet(_REMOTE, '/series')[0])
f8d781d1d267 test_changes, test_archive, test_media_archive
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 7
diff changeset
399 self.assertEqual(1, len(z.namelist()))
f8d781d1d267 test_changes, test_archive, test_media_archive
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 7
diff changeset
400
f8d781d1d267 test_changes, test_archive, test_media_archive
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 7
diff changeset
401 UploadInstance(_REMOTE, 'Brainix/Flair/IM-0001-0001.dcm')
f8d781d1d267 test_changes, test_archive, test_media_archive
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 7
diff changeset
402
f8d781d1d267 test_changes, test_archive, test_media_archive
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 7
diff changeset
403 z = GetArchive(_REMOTE, '/patients/%s/archive' % DoGet(_REMOTE, '/patients')[0])
f8d781d1d267 test_changes, test_archive, test_media_archive
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 7
diff changeset
404 self.assertEqual(2, len(z.namelist()))
f8d781d1d267 test_changes, test_archive, test_media_archive
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 7
diff changeset
405
f8d781d1d267 test_changes, test_archive, test_media_archive
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 7
diff changeset
406
f8d781d1d267 test_changes, test_archive, test_media_archive
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 7
diff changeset
407 def test_media_archive(self):
f8d781d1d267 test_changes, test_archive, test_media_archive
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 7
diff changeset
408 UploadInstance(_REMOTE, 'Knee/T1/IM-0001-0001.dcm')
f8d781d1d267 test_changes, test_archive, test_media_archive
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 7
diff changeset
409 UploadInstance(_REMOTE, 'Knee/T2/IM-0001-0001.dcm')
f8d781d1d267 test_changes, test_archive, test_media_archive
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 7
diff changeset
410
f8d781d1d267 test_changes, test_archive, test_media_archive
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 7
diff changeset
411 z = GetArchive(_REMOTE, '/patients/%s/media' % DoGet(_REMOTE, '/patients')[0])
f8d781d1d267 test_changes, test_archive, test_media_archive
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 7
diff changeset
412 self.assertEqual(3, len(z.namelist()))
f8d781d1d267 test_changes, test_archive, test_media_archive
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 7
diff changeset
413 self.assertTrue('IMAGES/IM0' in z.namelist())
f8d781d1d267 test_changes, test_archive, test_media_archive
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 7
diff changeset
414 self.assertTrue('IMAGES/IM1' in z.namelist())
f8d781d1d267 test_changes, test_archive, test_media_archive
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 7
diff changeset
415 self.assertTrue('DICOMDIR' in z.namelist())
f8d781d1d267 test_changes, test_archive, test_media_archive
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 7
diff changeset
416
f8d781d1d267 test_changes, test_archive, test_media_archive
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 7
diff changeset
417 try:
f8d781d1d267 test_changes, test_archive, test_media_archive
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 7
diff changeset
418 os.remove('/tmp/DICOMDIR')
f8d781d1d267 test_changes, test_archive, test_media_archive
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 7
diff changeset
419 except:
f8d781d1d267 test_changes, test_archive, test_media_archive
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 7
diff changeset
420 # The file does not exist
f8d781d1d267 test_changes, test_archive, test_media_archive
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 7
diff changeset
421 pass
f8d781d1d267 test_changes, test_archive, test_media_archive
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 7
diff changeset
422
f8d781d1d267 test_changes, test_archive, test_media_archive
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 7
diff changeset
423 z.extract('DICOMDIR', '/tmp')
45
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 44
diff changeset
424 a = subprocess.check_output([ FindExecutable('dciodvfy'), '/tmp/DICOMDIR' ],
8
f8d781d1d267 test_changes, test_archive, test_media_archive
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 7
diff changeset
425 stderr = subprocess.STDOUT).split('\n')
f8d781d1d267 test_changes, test_archive, test_media_archive
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 7
diff changeset
426 self.assertEqual(3, len(a))
f8d781d1d267 test_changes, test_archive, test_media_archive
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 7
diff changeset
427 self.assertTrue(a[0].startswith('Warning'))
f8d781d1d267 test_changes, test_archive, test_media_archive
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 7
diff changeset
428 self.assertEqual('BasicDirectory', a[1])
f8d781d1d267 test_changes, test_archive, test_media_archive
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 7
diff changeset
429 self.assertEqual('', a[2])
f8d781d1d267 test_changes, test_archive, test_media_archive
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 7
diff changeset
430
45
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 44
diff changeset
431 a = subprocess.check_output([ FindExecutable('dcentvfy'), '/tmp/DICOMDIR' ],
8
f8d781d1d267 test_changes, test_archive, test_media_archive
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 7
diff changeset
432 stderr = subprocess.STDOUT).split('\n')
f8d781d1d267 test_changes, test_archive, test_media_archive
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 7
diff changeset
433 self.assertEqual(1, len(a))
f8d781d1d267 test_changes, test_archive, test_media_archive
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 7
diff changeset
434 self.assertEqual('', a[0])
f8d781d1d267 test_changes, test_archive, test_media_archive
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 7
diff changeset
435
45
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 44
diff changeset
436 a = subprocess.check_output([ FindExecutable('dcm2xml'), '/tmp/DICOMDIR' ])
8
f8d781d1d267 test_changes, test_archive, test_media_archive
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 7
diff changeset
437 self.assertTrue(re.search('1.3.46.670589.11.17521.5.0.3124.2008081908590448738', a) != None)
f8d781d1d267 test_changes, test_archive, test_media_archive
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 7
diff changeset
438 self.assertTrue(re.search('1.3.46.670589.11.17521.5.0.3124.2008081909113806560', a) != None)
f8d781d1d267 test_changes, test_archive, test_media_archive
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 7
diff changeset
439
f8d781d1d267 test_changes, test_archive, test_media_archive
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 7
diff changeset
440 os.remove('/tmp/DICOMDIR')
10
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 8
diff changeset
441
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 8
diff changeset
442
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 8
diff changeset
443 def test_protection(self):
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 8
diff changeset
444 UploadInstance(_REMOTE, 'Knee/T1/IM-0001-0001.dcm')
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 8
diff changeset
445 UploadInstance(_REMOTE, 'Brainix/Flair/IM-0001-0001.dcm')
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 8
diff changeset
446 self.assertEqual(2, len(DoGet(_REMOTE, '/patients')))
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 8
diff changeset
447 a = DoGet(_REMOTE, '/patients')[0]
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 8
diff changeset
448 b = DoGet(_REMOTE, '/patients')[1]
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 8
diff changeset
449 self.assertEqual(0, DoGet(_REMOTE, '/patients/%s/protected' % a))
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 8
diff changeset
450 DoPut(_REMOTE, '/patients/%s/protected' % a, '0', 'text/plain')
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 8
diff changeset
451 self.assertEqual(0, DoGet(_REMOTE, '/patients/%s/protected' % a))
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 8
diff changeset
452 DoPut(_REMOTE, '/patients/%s/protected' % a, '1', 'text/plain')
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 8
diff changeset
453 self.assertEqual(1, DoGet(_REMOTE, '/patients/%s/protected' % a))
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 8
diff changeset
454 DoPut(_REMOTE, '/patients/%s/protected' % a, '0', 'text/plain')
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 8
diff changeset
455 self.assertEqual(0, DoGet(_REMOTE, '/patients/%s/protected' % a))
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 8
diff changeset
456
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 8
diff changeset
457
12
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 11
diff changeset
458 def test_raw_tags(self):
10
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 8
diff changeset
459 i = UploadInstance(_REMOTE, 'PrivateTags.dcm')['ID']
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 8
diff changeset
460
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 8
diff changeset
461 dicom = DoGet(_REMOTE, '/instances/%s/file' % i)
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 8
diff changeset
462 self.assertEqual('1a7c56cb02d6e742cc9c856a8ac182e3', ComputeMD5(dicom))
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 8
diff changeset
463
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 8
diff changeset
464 s = '/instances/%s/content/' % i
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 8
diff changeset
465
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 8
diff changeset
466 self.assertEqual('LOGIQBOOK', DoGet(_REMOTE, s + '0008-1010').strip())
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 8
diff changeset
467 self.assertRaises(Exception, lambda: DoGet(_REMOTE, s + '0008-1011'))
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 8
diff changeset
468
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 8
diff changeset
469 self.assertEqual('Abdomen', DoGet(_REMOTE, s + '7fe1-1001/0/7fe1-1008/0/7fe1-1057').strip())
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 8
diff changeset
470 self.assertEqual('cla_3c', DoGet(_REMOTE, s + '7fe1-1001/0/7fe1-1008/8/7fe1-1057').strip())
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 8
diff changeset
471
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 8
diff changeset
472 UploadInstance(_REMOTE, 'Brainix/Epi/IM-0001-0001.dcm')
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 8
diff changeset
473 UploadInstance(_REMOTE, 'Brainix/Flair/IM-0001-0001.dcm')
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 8
diff changeset
474 UploadInstance(_REMOTE, 'Knee/T1/IM-0001-0001.dcm')
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 8
diff changeset
475 UploadInstance(_REMOTE, 'Knee/T2/IM-0001-0001.dcm')
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 8
diff changeset
476
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 8
diff changeset
477 for i in DoGet(_REMOTE, '/instances'):
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 8
diff changeset
478 aid = DoGet(_REMOTE, '/instances/%s' % i)['MainDicomTags']['SOPInstanceUID']
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 8
diff changeset
479 self.assertEqual(aid, DoGet(_REMOTE, '/instances/%s/content/0008-0018' % i).replace(chr(0), ''))
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 8
diff changeset
480
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 8
diff changeset
481
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 8
diff changeset
482 def test_raw_tags_mdn(self):
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 8
diff changeset
483 # Bug reported by Cyril Paulus
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 8
diff changeset
484 i = UploadInstance(_REMOTE, 'PrivateMDNTags.dcm')['ID']
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 8
diff changeset
485 self.assertAlmostEqual(0.000027, DoGet(_REMOTE, '/instances/%s/content/7053-1000' % i))
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 8
diff changeset
486
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 8
diff changeset
487
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 8
diff changeset
488 def test_modify_instance(self):
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 8
diff changeset
489 i = UploadInstance(_REMOTE, 'PrivateTags.dcm')['ID']
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 8
diff changeset
490 modified = DoPost(_REMOTE, '/instances/%s/modify' % i,
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 8
diff changeset
491 json.dumps({
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 8
diff changeset
492 "Replace" : {
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 8
diff changeset
493 "PatientName" : "hello",
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 8
diff changeset
494 #"PatientID" : "world"
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 8
diff changeset
495 },
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 8
diff changeset
496 "Remove" : [ "StationName" ],
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 8
diff changeset
497 "RemovePrivateTags" : None
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 8
diff changeset
498 }),
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 8
diff changeset
499 'application/json')
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 8
diff changeset
500 j = DoPost(_REMOTE, '/instances', modified, 'application/dicom')['ID']
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 8
diff changeset
501
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 8
diff changeset
502 self.assertNotEqual('hello', DoGet(_REMOTE, '/instances/%s/content/0010-0010' % i).strip())
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 8
diff changeset
503 #self.assertNotEqual('world', DoGet(_REMOTE, '/instances/%s/content/0010-0020' % i).strip())
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 8
diff changeset
504 self.assertEqual('LOGIQBOOK', DoGet(_REMOTE, '/instances/%s/content/0008-1010' % i).strip())
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 8
diff changeset
505 DoGet(_REMOTE, '/instances/%s/content/6003-1010' % i) # Some private tag
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 8
diff changeset
506
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 8
diff changeset
507 self.assertEqual('hello', DoGet(_REMOTE, '/instances/%s/content/0010-0010' % j).strip())
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 8
diff changeset
508 #self.assertEqual('world', DoGet(_REMOTE, '/instances/%s/content/0010-0020' % j).strip())
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 8
diff changeset
509 self.assertRaises(Exception, lambda: DoGet(_REMOTE, '/instances/%s/content/0008-1010' % j))
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 8
diff changeset
510 self.assertRaises(Exception, lambda: DoGet(_REMOTE, '/instances/%s/content/6003-1010' % j))
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 8
diff changeset
511
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 8
diff changeset
512
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 8
diff changeset
513 def test_modify_series(self):
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 8
diff changeset
514 # Upload 4 images from the same series
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 8
diff changeset
515 for i in range(4):
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 8
diff changeset
516 UploadInstance(_REMOTE, 'Brainix/Epi/IM-0001-000%d.dcm' % (i + 1))
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 8
diff changeset
517
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 8
diff changeset
518 origSeries = DoGet(_REMOTE, '/series')[0]
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 8
diff changeset
519 newSeries = DoPost(_REMOTE, '/series/%s/modify' % origSeries,
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 8
diff changeset
520 '{"Replace":{"PatientName":"Jodogne"}}',
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 8
diff changeset
521 'application/json')['ID']
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 8
diff changeset
522
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 8
diff changeset
523 self.assertEqual(origSeries, DoGet(_REMOTE, '/series/%s' % newSeries)['ModifiedFrom'])
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 8
diff changeset
524 instances = DoGet(_REMOTE, '/series/%s' % newSeries)['Instances']
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 8
diff changeset
525 self.assertEqual(4, len(instances))
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 8
diff changeset
526 for i in instances:
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 8
diff changeset
527 j = DoGet(_REMOTE, '/instances/%s' % i)['ModifiedFrom']
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 8
diff changeset
528 self.assertEqual(newSeries, DoGet(_REMOTE, '/instances/%s' % i)['ParentSeries'])
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 8
diff changeset
529 self.assertEqual(origSeries, DoGet(_REMOTE, '/instances/%s' % j)['ParentSeries'])
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 8
diff changeset
530
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 8
diff changeset
531 self.assertEqual('Jodogne', DoGet(_REMOTE, '/instances/%s/content/0010-0010' % i).strip())
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 8
diff changeset
532 self.assertNotEqual('Jodogne', DoGet(_REMOTE, '/instances/%s/content/0010-0010' % j).strip())
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 8
diff changeset
533
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 8
diff changeset
534
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 8
diff changeset
535 def test_modify_study(self):
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 8
diff changeset
536 # Upload 4 images from the 2 series of the same study
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 8
diff changeset
537 for i in range(4):
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 8
diff changeset
538 UploadInstance(_REMOTE, 'Brainix/Flair/IM-0001-000%d.dcm' % (i + 1))
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 8
diff changeset
539 UploadInstance(_REMOTE, 'Brainix/Epi/IM-0001-000%d.dcm' % (i + 1))
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 8
diff changeset
540
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 8
diff changeset
541 origStudy = DoGet(_REMOTE, '/studies')[0]
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 8
diff changeset
542 newStudy = DoPost(_REMOTE, '/studies/%s/modify' % origStudy,
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 8
diff changeset
543 '{"Replace":{"PatientName":"Jodogne"}}',
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 8
diff changeset
544 'application/json')['ID']
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 8
diff changeset
545
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 8
diff changeset
546 self.assertEqual(origStudy, DoGet(_REMOTE, '/studies/%s' % newStudy)['ModifiedFrom'])
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 8
diff changeset
547 series = DoGet(_REMOTE, '/studies/%s' % newStudy)['Series']
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 8
diff changeset
548 self.assertEqual(2, len(series))
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 8
diff changeset
549 for s in series:
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 8
diff changeset
550 ss = DoGet(_REMOTE, '/series/%s' % s)['ModifiedFrom']
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 8
diff changeset
551 self.assertEqual(newStudy, DoGet(_REMOTE, '/series/%s' % s)['ParentStudy'])
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 8
diff changeset
552 self.assertEqual(origStudy, DoGet(_REMOTE, '/series/%s' % ss)['ParentStudy'])
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 8
diff changeset
553
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 8
diff changeset
554 instances = DoGet(_REMOTE, '/series/%s' % s)['Instances']
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 8
diff changeset
555 for i in instances:
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 8
diff changeset
556 j = DoGet(_REMOTE, '/instances/%s' % i)['ModifiedFrom']
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 8
diff changeset
557 self.assertEqual(s, DoGet(_REMOTE, '/instances/%s' % i)['ParentSeries'])
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 8
diff changeset
558 self.assertEqual(ss, DoGet(_REMOTE, '/instances/%s' % j)['ParentSeries'])
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 8
diff changeset
559
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 8
diff changeset
560 self.assertEqual('Jodogne', DoGet(_REMOTE, '/instances/%s/content/0010-0010' % i).strip())
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 8
diff changeset
561 self.assertNotEqual('Jodogne', DoGet(_REMOTE, '/instances/%s/content/0010-0010' % j).strip())
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 8
diff changeset
562
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 8
diff changeset
563
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 8
diff changeset
564 def test_anonymize_series(self):
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 8
diff changeset
565 # Upload 4 images from the same series
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 8
diff changeset
566 for i in range(4):
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 8
diff changeset
567 UploadInstance(_REMOTE, 'Brainix/Epi/IM-0001-000%d.dcm' % (i + 1))
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 8
diff changeset
568
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 8
diff changeset
569 origSeries = DoGet(_REMOTE, '/series')[0]
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 8
diff changeset
570 newSeries = DoPost(_REMOTE, '/series/%s/anonymize' % origSeries,
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 8
diff changeset
571 '{}',
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 8
diff changeset
572 'application/json')['ID']
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 8
diff changeset
573
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 8
diff changeset
574 self.assertEqual(origSeries, DoGet(_REMOTE, '/series/%s' % newSeries)['AnonymizedFrom'])
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 8
diff changeset
575 instances = DoGet(_REMOTE, '/series/%s' % newSeries)['Instances']
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 8
diff changeset
576 self.assertEqual(4, len(instances))
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 8
diff changeset
577 for i in instances:
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 8
diff changeset
578 j = DoGet(_REMOTE, '/instances/%s' % i)['AnonymizedFrom']
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 8
diff changeset
579 self.assertEqual(newSeries, DoGet(_REMOTE, '/instances/%s' % i)['ParentSeries'])
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 8
diff changeset
580 self.assertEqual(origSeries, DoGet(_REMOTE, '/instances/%s' % j)['ParentSeries'])
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 8
diff changeset
581
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 8
diff changeset
582 DoGet(_REMOTE, '/instances/%s/content/0008-1010' % j)
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 8
diff changeset
583 self.assertRaises(Exception, lambda: DoGet(_REMOTE, '/instances/%s/content/0008-1010' % i))
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 8
diff changeset
584
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 8
diff changeset
585
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 8
diff changeset
586 def test_anonymize_study(self):
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 8
diff changeset
587 # Upload 4 images from the 2 series of the same study
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 8
diff changeset
588 for i in range(4):
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 8
diff changeset
589 UploadInstance(_REMOTE, 'Brainix/Flair/IM-0001-000%d.dcm' % (i + 1))
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 8
diff changeset
590 UploadInstance(_REMOTE, 'Brainix/Epi/IM-0001-000%d.dcm' % (i + 1))
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 8
diff changeset
591
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 8
diff changeset
592 origStudy = DoGet(_REMOTE, '/studies')[0]
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 8
diff changeset
593 newStudy = DoPost(_REMOTE,'/studies/%s/anonymize' % origStudy,
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 8
diff changeset
594 '{"Replace":{"PatientName":"Jodogne"}}',
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 8
diff changeset
595 'application/json')['ID']
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 8
diff changeset
596
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 8
diff changeset
597 self.assertEqual(origStudy, DoGet(_REMOTE, '/studies/%s' % newStudy)['AnonymizedFrom'])
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 8
diff changeset
598 series = DoGet(_REMOTE, '/studies/%s' % newStudy)['Series']
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 8
diff changeset
599 self.assertEqual(2, len(series))
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 8
diff changeset
600 for s in series:
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 8
diff changeset
601 ss = DoGet(_REMOTE, '/series/%s' % s)['AnonymizedFrom']
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 8
diff changeset
602 self.assertEqual(newStudy, DoGet(_REMOTE, '/series/%s' % s)['ParentStudy'])
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 8
diff changeset
603 self.assertEqual(origStudy, DoGet(_REMOTE, '/series/%s' % ss)['ParentStudy'])
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 8
diff changeset
604
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 8
diff changeset
605 instances = DoGet(_REMOTE, '/series/%s' % s)['Instances']
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 8
diff changeset
606 for i in instances:
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 8
diff changeset
607 j = DoGet(_REMOTE, '/instances/%s' % i)['AnonymizedFrom']
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 8
diff changeset
608 self.assertEqual(s, DoGet(_REMOTE, '/instances/%s' % i)['ParentSeries'])
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 8
diff changeset
609 self.assertEqual(ss, DoGet(_REMOTE, '/instances/%s' % j)['ParentSeries'])
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 8
diff changeset
610
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 8
diff changeset
611 self.assertEqual('Jodogne', DoGet(_REMOTE, '/instances/%s/content/0010-0010' % i).strip())
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 8
diff changeset
612 self.assertNotEqual('Jodogne', DoGet(_REMOTE, '/instances/%s/content/0010-0010' % j).strip())
11
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 10
diff changeset
613
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 10
diff changeset
614
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 10
diff changeset
615
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 10
diff changeset
616 def test_storescu(self):
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 10
diff changeset
617 # Check emptiness
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 10
diff changeset
618 e = DoGet(_REMOTE, '/exports')
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 10
diff changeset
619 self.assertEqual(0, len(e['Exports']))
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 10
diff changeset
620 self.assertEqual(0, e['Last'])
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 10
diff changeset
621 self.assertTrue(e['Done'])
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 10
diff changeset
622 e = DoGet(_REMOTE, '/exports?last')
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 10
diff changeset
623 self.assertEqual(0, len(e['Exports']))
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 10
diff changeset
624 self.assertEqual(0, e['Last'])
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 10
diff changeset
625 self.assertTrue(e['Done'])
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 10
diff changeset
626
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 10
diff changeset
627 # Add 1 instance
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 10
diff changeset
628 i = UploadInstance(_REMOTE, 'DummyCT.dcm')['ID']
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 10
diff changeset
629 self.assertEqual(0, len(DoGet(_LOCAL, '/patients')))
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 10
diff changeset
630
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 10
diff changeset
631 # Export the instance
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 10
diff changeset
632 j = DoPost(_REMOTE, '/modalities/orthanctest/store', str(i), 'text/plain') # instance
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 10
diff changeset
633 self.assertEqual(1, len(DoGet(_LOCAL, '/patients')))
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 10
diff changeset
634 self.assertEqual(1, len(DoGet(_LOCAL, '/studies')))
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 10
diff changeset
635 self.assertEqual(1, len(DoGet(_LOCAL, '/series')))
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 10
diff changeset
636 self.assertEqual(1, len(DoGet(_LOCAL, '/instances')))
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 10
diff changeset
637
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 10
diff changeset
638 e = DoGet(_REMOTE, '/exports')
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 10
diff changeset
639 self.assertEqual(1, len(e['Exports']))
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 10
diff changeset
640 self.assertTrue(e['Done'])
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 10
diff changeset
641 self.assertEqual(e['Exports'][-1]['Seq'], e['Last'])
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 10
diff changeset
642 e = DoGet(_REMOTE, '/exports?limit=1')
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 10
diff changeset
643 self.assertEqual(1, len(e['Exports']))
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 10
diff changeset
644 self.assertTrue(e['Done'])
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 10
diff changeset
645 self.assertEqual(e['Exports'][-1]['Seq'], e['Last'])
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 10
diff changeset
646 e = DoGet(_REMOTE, '/exports?last')
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 10
diff changeset
647 self.assertEqual(1, len(e['Exports']))
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 10
diff changeset
648 self.assertTrue(e['Done'])
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 10
diff changeset
649 self.assertEqual(e['Exports'][-1]['Seq'], e['Last'])
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 10
diff changeset
650 seqInstance = e['Last']
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 10
diff changeset
651
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 10
diff changeset
652 # Export the series
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 10
diff changeset
653 j = DoPost(_REMOTE, '/modalities/orthanctest/store', 'f2635388-f01d497a-15f7c06b-ad7dba06-c4c599fe', 'text/plain')
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 10
diff changeset
654
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 10
diff changeset
655 e = DoGet(_REMOTE, '/exports')
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 10
diff changeset
656 self.assertEqual(2, len(e['Exports']))
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 10
diff changeset
657 self.assertTrue(e['Done'])
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 10
diff changeset
658 self.assertEqual(e['Exports'][-1]['Seq'], e['Last'])
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 10
diff changeset
659 seqSeries = e['Last']
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 10
diff changeset
660 self.assertNotEqual(seqInstance, seqSeries)
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 10
diff changeset
661 e = DoGet(_REMOTE, '/exports?limit=1&since=0')
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 10
diff changeset
662 self.assertEqual(1, len(e['Exports']))
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 10
diff changeset
663 self.assertFalse(e['Done'])
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 10
diff changeset
664 self.assertEqual(e['Exports'][-1]['Seq'], seqInstance)
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 10
diff changeset
665 e = DoGet(_REMOTE, '/exports?limit=1&since=' + str(seqInstance))
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 10
diff changeset
666 self.assertEqual(1, len(e['Exports']))
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 10
diff changeset
667 self.assertTrue(e['Done'])
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 10
diff changeset
668 self.assertEqual(e['Exports'][-1]['Seq'], seqSeries)
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 10
diff changeset
669 e = DoGet(_REMOTE, '/exports?last')
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 10
diff changeset
670 self.assertEqual(1, len(e['Exports']))
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 10
diff changeset
671 self.assertTrue(e['Done'])
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 10
diff changeset
672 self.assertEqual(e['Exports'][-1]['Seq'], seqSeries)
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 10
diff changeset
673
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 10
diff changeset
674 # Export the study
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 10
diff changeset
675 j = DoPost(_REMOTE, '/modalities/orthanctest/store', 'b9c08539-26f93bde-c81ab0d7-bffaf2cb-a4d0bdd0', 'text/plain')
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 10
diff changeset
676 seqStudy = DoGet(_REMOTE, '/exports')['Last']
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 10
diff changeset
677
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 10
diff changeset
678 # Export the patient
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 10
diff changeset
679 j = DoPost(_REMOTE, '/modalities/orthanctest/store', '6816cb19-844d5aee-85245eba-28e841e6-2414fae2', 'text/plain')
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 10
diff changeset
680 self.assertEqual(1, len(DoGet(_LOCAL, '/patients')))
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 10
diff changeset
681 self.assertEqual(1, len(DoGet(_LOCAL, '/studies')))
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 10
diff changeset
682 self.assertEqual(1, len(DoGet(_LOCAL, '/series')))
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 10
diff changeset
683 self.assertEqual(1, len(DoGet(_LOCAL, '/instances')))
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 10
diff changeset
684
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 10
diff changeset
685 e = DoGet(_REMOTE, '/exports')
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 10
diff changeset
686 self.assertEqual(4, len(e['Exports']))
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 10
diff changeset
687 self.assertTrue(e['Done'])
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 10
diff changeset
688 self.assertEqual(e['Exports'][-1]['Seq'], e['Last'])
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 10
diff changeset
689 seqPatient = e['Last']
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 10
diff changeset
690 self.assertNotEqual(seqInstance, seqSeries)
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 10
diff changeset
691 self.assertNotEqual(seqSeries, seqStudy)
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 10
diff changeset
692 self.assertNotEqual(seqStudy, seqPatient)
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 10
diff changeset
693 self.assertTrue(seqInstance < seqSeries)
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 10
diff changeset
694 self.assertTrue(seqSeries < seqStudy)
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 10
diff changeset
695 self.assertTrue(seqStudy < seqPatient)
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 10
diff changeset
696 e = DoGet(_REMOTE, '/exports?limit=1&since=0')
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 10
diff changeset
697 self.assertEqual(1, len(e['Exports']))
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 10
diff changeset
698 self.assertFalse(e['Done'])
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 10
diff changeset
699 self.assertEqual(e['Exports'][-1]['Seq'], seqInstance)
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 10
diff changeset
700 e = DoGet(_REMOTE, '/exports?limit=1&since=' + str(seqInstance))
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 10
diff changeset
701 self.assertEqual(1, len(e['Exports']))
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 10
diff changeset
702 self.assertFalse(e['Done'])
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 10
diff changeset
703 self.assertEqual(e['Exports'][-1]['Seq'], seqSeries)
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 10
diff changeset
704 e = DoGet(_REMOTE, '/exports?limit=1&since=' + str(seqSeries))
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 10
diff changeset
705 self.assertEqual(1, len(e['Exports']))
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 10
diff changeset
706 self.assertFalse(e['Done'])
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 10
diff changeset
707 self.assertEqual(e['Exports'][-1]['Seq'], seqStudy)
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 10
diff changeset
708 e = DoGet(_REMOTE, '/exports?limit=1&since=' + str(seqStudy))
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 10
diff changeset
709 self.assertEqual(1, len(e['Exports']))
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 10
diff changeset
710 self.assertTrue(e['Done'])
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 10
diff changeset
711 self.assertEqual(e['Exports'][-1]['Seq'], seqPatient)
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 10
diff changeset
712 e = DoGet(_REMOTE, '/exports?last')
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 10
diff changeset
713 self.assertEqual(1, len(e['Exports']))
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 10
diff changeset
714 self.assertTrue(e['Done'])
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 10
diff changeset
715 self.assertEqual(e['Exports'][-1]['Seq'], seqPatient)
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 10
diff changeset
716
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 10
diff changeset
717
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 10
diff changeset
718 # Check the content of the logged information
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 10
diff changeset
719 e = DoGet(_REMOTE, '/exports')['Exports']
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 10
diff changeset
720
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 10
diff changeset
721 if 'PatientID' in e[0]:
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 10
diff changeset
722 # Since Orthanc 0.8.6
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 10
diff changeset
723 patient = 'PatientID'
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 10
diff changeset
724 study = 'StudyInstanceUID'
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 10
diff changeset
725 series = 'SeriesInstanceUID'
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 10
diff changeset
726 instance = 'SOPInstanceUID'
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 10
diff changeset
727 else:
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 10
diff changeset
728 # Up to Orthanc 0.8.5
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 10
diff changeset
729 patient = 'PatientId'
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 10
diff changeset
730 study = 'StudyInstanceUid'
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 10
diff changeset
731 series = 'SeriesInstanceUid'
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 10
diff changeset
732 instance = 'SopInstanceUid'
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 10
diff changeset
733
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 10
diff changeset
734 for k in range(4):
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 10
diff changeset
735 self.assertTrue('Date' in e[k])
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 10
diff changeset
736 self.assertTrue('Seq' in e[k])
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 10
diff changeset
737 self.assertEqual('orthanctest', e[k]['RemoteModality'])
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 10
diff changeset
738
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 10
diff changeset
739 self.assertEqual(10, len(e[0]))
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 10
diff changeset
740 self.assertEqual('Instance', e[0]['ResourceType'])
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 10
diff changeset
741 self.assertEqual('66a662ce-7430e543-bad44d47-0dc5a943-ec7a538d', e[0]['ID'])
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 10
diff changeset
742 self.assertEqual('/instances/66a662ce-7430e543-bad44d47-0dc5a943-ec7a538d', e[0]['Path'])
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 10
diff changeset
743 self.assertEqual('1.2.840.113619.2.176.2025.1499492.7040.1171286242.109', e[0][instance])
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 10
diff changeset
744 self.assertEqual('1.2.840.113619.2.176.2025.1499492.7391.1171285944.394', e[0][series])
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 10
diff changeset
745 self.assertEqual('1.2.840.113619.2.176.2025.1499492.7391.1171285944.390', e[0][study])
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 10
diff changeset
746 self.assertEqual('ozp00SjY2xG', e[0][patient])
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 10
diff changeset
747
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 10
diff changeset
748 self.assertEqual(9, len(e[1]))
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 10
diff changeset
749 self.assertEqual('Series', e[1]['ResourceType'])
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 10
diff changeset
750 self.assertEqual('f2635388-f01d497a-15f7c06b-ad7dba06-c4c599fe', e[1]['ID'])
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 10
diff changeset
751 self.assertEqual('/series/f2635388-f01d497a-15f7c06b-ad7dba06-c4c599fe', e[1]['Path'])
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 10
diff changeset
752 self.assertEqual('1.2.840.113619.2.176.2025.1499492.7391.1171285944.394', e[1][series])
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 10
diff changeset
753 self.assertEqual('1.2.840.113619.2.176.2025.1499492.7391.1171285944.390', e[1][study])
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 10
diff changeset
754 self.assertEqual('ozp00SjY2xG', e[1][patient])
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 10
diff changeset
755
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 10
diff changeset
756 self.assertEqual(8, len(e[2]))
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 10
diff changeset
757 self.assertEqual('Study', e[2]['ResourceType'])
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 10
diff changeset
758 self.assertEqual('b9c08539-26f93bde-c81ab0d7-bffaf2cb-a4d0bdd0', e[2]['ID'])
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 10
diff changeset
759 self.assertEqual('/studies/b9c08539-26f93bde-c81ab0d7-bffaf2cb-a4d0bdd0', e[2]['Path'])
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 10
diff changeset
760 self.assertEqual('1.2.840.113619.2.176.2025.1499492.7391.1171285944.390', e[2][study])
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 10
diff changeset
761 self.assertEqual('ozp00SjY2xG', e[2][patient])
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 10
diff changeset
762
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 10
diff changeset
763 self.assertEqual(7, len(e[3]))
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 10
diff changeset
764 self.assertEqual('Patient', e[3]['ResourceType'])
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 10
diff changeset
765 self.assertEqual('6816cb19-844d5aee-85245eba-28e841e6-2414fae2', e[3]['ID'])
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 10
diff changeset
766 self.assertEqual('/patients/6816cb19-844d5aee-85245eba-28e841e6-2414fae2', e[3]['Path'])
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 10
diff changeset
767 self.assertEqual('ozp00SjY2xG', e[3][patient])
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 10
diff changeset
768
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 10
diff changeset
769 DropOrthanc(_REMOTE)
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 10
diff changeset
770 self.assertEqual(0, len(DoGet(_REMOTE, '/exports')['Exports']))
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 10
diff changeset
771
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 10
diff changeset
772
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 10
diff changeset
773 def test_store_peer(self):
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 10
diff changeset
774 self.assertEqual(0, len(DoGet(_LOCAL, '/exports')['Exports']))
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 10
diff changeset
775 self.assertEqual(0, len(DoGet(_REMOTE, '/exports')['Exports']))
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 10
diff changeset
776
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 10
diff changeset
777 i = UploadInstance(_REMOTE, 'DummyCT.dcm')['ID']
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 10
diff changeset
778 self.assertEqual(0, len(DoGet(_LOCAL, '/patients')))
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 10
diff changeset
779 self.assertEqual(1, len(DoGet(_REMOTE, '/patients')))
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 10
diff changeset
780
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 10
diff changeset
781 j = DoPost(_REMOTE, '/peers/peer/store', str(i), 'text/plain')
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 10
diff changeset
782 self.assertEqual(1, len(DoGet(_LOCAL, '/patients')))
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 10
diff changeset
783 self.assertEqual(1, len(DoGet(_REMOTE, '/patients')))
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 10
diff changeset
784
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 10
diff changeset
785 self.assertEqual(1, len(DoGet(_REMOTE, '/exports')['Exports']))
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 10
diff changeset
786
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 10
diff changeset
787 DropOrthanc(_REMOTE)
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 10
diff changeset
788 self.assertEqual(0, len(DoGet(_REMOTE, '/exports')['Exports']))
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 10
diff changeset
789
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 10
diff changeset
790
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 10
diff changeset
791 def test_bulk_storescu(self):
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 10
diff changeset
792 self.assertEqual(0, len(DoGet(_LOCAL, '/patients')))
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 10
diff changeset
793
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 10
diff changeset
794 a = UploadInstance(_REMOTE, 'Knee/T1/IM-0001-0001.dcm')
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 10
diff changeset
795 b = UploadInstance(_REMOTE, 'Knee/T2/IM-0001-0001.dcm')
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 10
diff changeset
796
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 10
diff changeset
797 j = DoPost(_REMOTE, '/modalities/orthanctest/store', [ a['ID'], b['ID'] ], 'application/json')
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 10
diff changeset
798 self.assertEqual(2, len(DoGet(_LOCAL, '/instances')))
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 10
diff changeset
799
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 10
diff changeset
800 DropOrthanc(_LOCAL)
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 10
diff changeset
801
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 10
diff changeset
802 # Send using patient's UUID
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 10
diff changeset
803 self.assertEqual(0, len(DoGet(_LOCAL, '/instances')))
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 10
diff changeset
804 j = DoPost(_REMOTE, '/modalities/orthanctest/store',
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 10
diff changeset
805 [ 'ca29faea-b6a0e17f-067743a1-8b778011-a48b2a17' ], 'application/json')
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 10
diff changeset
806 self.assertEqual(2, len(DoGet(_LOCAL, '/instances')))
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 10
diff changeset
807
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 10
diff changeset
808
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 10
diff changeset
809 def test_color(self):
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 10
diff changeset
810 i = UploadInstance(_REMOTE, 'ColorTestMalaterre.dcm')['ID']
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 10
diff changeset
811 im = GetImage(_REMOTE, '/instances/%s/preview' % i)
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 10
diff changeset
812 self.assertEqual("RGB", im.mode)
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 10
diff changeset
813 self.assertEqual(41, im.size[0])
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 10
diff changeset
814 self.assertEqual(41, im.size[1])
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 10
diff changeset
815
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 10
diff changeset
816 # http://effbot.org/zone/pil-comparing-images.htm
13
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 12
diff changeset
817 truth = Image.open(GetDatabasePath('ColorTestMalaterre.png'))
11
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 10
diff changeset
818 self.assertTrue(ImageChops.difference(im, truth).getbbox() is None)
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 10
diff changeset
819
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 10
diff changeset
820
12
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 11
diff changeset
821 def test_faking_ruby_put(self):
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 11
diff changeset
822 UploadInstance(_REMOTE, 'Knee/T1/IM-0001-0001.dcm')
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 11
diff changeset
823 UploadInstance(_REMOTE, 'Brainix/Flair/IM-0001-0001.dcm')
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 11
diff changeset
824 self.assertEqual(2, len(DoGet(_REMOTE, '/patients')))
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 11
diff changeset
825 a = DoGet(_REMOTE, '/patients')[0]
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 11
diff changeset
826 b = DoGet(_REMOTE, '/patients')[1]
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 11
diff changeset
827 self.assertEqual(0, DoGet(_REMOTE, '/patients/%s/protected' % a))
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 11
diff changeset
828 DoGet(_REMOTE, '/patients/%s/protected' % a, data = { '_method' : 'PUT' }, body = '0')
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 11
diff changeset
829 self.assertEqual(0, DoGet(_REMOTE, '/patients/%s/protected' % a))
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 11
diff changeset
830 DoGet(_REMOTE, '/patients/%s/protected' % a, data = { '_method' : 'PUT' }, body = '1')
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 11
diff changeset
831 self.assertEqual(1, DoGet(_REMOTE, '/patients/%s/protected' % a))
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 11
diff changeset
832 DoGet(_REMOTE, '/patients/%s/protected' % a, data = { '_method' : 'PUT' }, body = '0')
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 11
diff changeset
833 self.assertEqual(0, DoGet(_REMOTE, '/patients/%s/protected' % a))
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 11
diff changeset
834
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 11
diff changeset
835
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 11
diff changeset
836 def test_faking_ruby_delete(self):
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 11
diff changeset
837 UploadInstance(_REMOTE, 'Knee/T1/IM-0001-0001.dcm')
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 11
diff changeset
838 UploadInstance(_REMOTE, 'Brainix/Flair/IM-0001-0001.dcm')
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 11
diff changeset
839 self.assertEqual(2, len(DoGet(_REMOTE, '/patients')))
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 11
diff changeset
840 a = DoGet(_REMOTE, '/patients')[0]
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 11
diff changeset
841 b = DoGet(_REMOTE, '/patients')[1]
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 11
diff changeset
842 DoGet(_REMOTE, '/patients/%s' % a, data = { '_method' : 'DELETE' })
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 11
diff changeset
843 self.assertEqual(1, len(DoGet(_REMOTE, '/patients')))
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 11
diff changeset
844 DoGet(_REMOTE, '/patients/%s' % b, data = { '_method' : 'DELETE' })
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 11
diff changeset
845 self.assertEqual(0, len(DoGet(_REMOTE, '/patients')))
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 11
diff changeset
846
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 11
diff changeset
847
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 11
diff changeset
848 def test_faking_google_put(self):
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 11
diff changeset
849 UploadInstance(_REMOTE, 'Knee/T1/IM-0001-0001.dcm')
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 11
diff changeset
850 UploadInstance(_REMOTE, 'Brainix/Flair/IM-0001-0001.dcm')
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 11
diff changeset
851 self.assertEqual(2, len(DoGet(_REMOTE, '/patients')))
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 11
diff changeset
852 a = DoGet(_REMOTE, '/patients')[0]
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 11
diff changeset
853 b = DoGet(_REMOTE, '/patients')[1]
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 11
diff changeset
854 self.assertEqual(0, DoGet(_REMOTE, '/patients/%s/protected' % a))
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 11
diff changeset
855 DoPost(_REMOTE, '/patients/%s/protected' % a, headers = { 'X-HTTP-Method-Override' : 'PUT' }, data = '0')
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 11
diff changeset
856 self.assertEqual(0, DoGet(_REMOTE, '/patients/%s/protected' % a))
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 11
diff changeset
857 DoPost(_REMOTE, '/patients/%s/protected' % a, headers = { 'X-HTTP-Method-Override' : 'PUT' }, data = '1')
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 11
diff changeset
858 self.assertEqual(1, DoGet(_REMOTE, '/patients/%s/protected' % a))
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 11
diff changeset
859 DoPost(_REMOTE, '/patients/%s/protected' % a, headers = { 'X-HTTP-Method-Override' : 'PUT' }, data = '0')
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 11
diff changeset
860 self.assertEqual(0, DoGet(_REMOTE, '/patients/%s/protected' % a))
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 11
diff changeset
861
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 11
diff changeset
862
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 11
diff changeset
863 def test_faking_google_delete(self):
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 11
diff changeset
864 UploadInstance(_REMOTE, 'Knee/T1/IM-0001-0001.dcm')
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 11
diff changeset
865 UploadInstance(_REMOTE, 'Brainix/Flair/IM-0001-0001.dcm')
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 11
diff changeset
866 self.assertEqual(2, len(DoGet(_REMOTE, '/patients')))
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 11
diff changeset
867 a = DoGet(_REMOTE, '/patients')[0]
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 11
diff changeset
868 b = DoGet(_REMOTE, '/patients')[1]
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 11
diff changeset
869 DoPost(_REMOTE, '/patients/%s' % a, headers = { 'X-HTTP-Method-Override' : 'DELETE' })
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 11
diff changeset
870 self.assertEqual(1, len(DoGet(_REMOTE, '/patients')))
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 11
diff changeset
871 DoPost(_REMOTE, '/patients/%s' % b, headers = { 'X-HTTP-Method-Override' : 'DELETE' })
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 11
diff changeset
872 self.assertEqual(0, len(DoGet(_REMOTE, '/patients')))
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 11
diff changeset
873
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 11
diff changeset
874
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 11
diff changeset
875 def test_lua(self):
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 11
diff changeset
876 self.assertEqual(42, DoPost(_REMOTE, '/tools/execute-script', 'print(42)'))
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 11
diff changeset
877 self.assertTrue(IsDefinedInLua(_REMOTE, 'PrintRecursive'))
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 11
diff changeset
878 self.assertFalse(IsDefinedInLua(_REMOTE, 'HelloWorld'))
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 11
diff changeset
879
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 11
diff changeset
880
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 11
diff changeset
881 def test_metadata(self):
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 11
diff changeset
882 UploadInstance(_REMOTE, 'Knee/T1/IM-0001-0001.dcm')
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 11
diff changeset
883 p = DoGet(_REMOTE, '/patients')[0]
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 11
diff changeset
884 i = DoGet(_REMOTE, '/instances')[0]
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 11
diff changeset
885
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 11
diff changeset
886 m = DoGet(_REMOTE, '/patients/%s/metadata' % p)
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 11
diff changeset
887 self.assertEqual(1, len(m))
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 11
diff changeset
888 self.assertEqual('LastUpdate', m[0])
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 11
diff changeset
889
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 11
diff changeset
890 m = DoGet(_REMOTE, '/instances/%s/metadata' % i)
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 11
diff changeset
891 self.assertEqual(3, len(m))
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 11
diff changeset
892 self.assertTrue('IndexInSeries' in m)
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 11
diff changeset
893 self.assertTrue('ReceptionDate' in m)
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 11
diff changeset
894 self.assertTrue('RemoteAET' in m)
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 11
diff changeset
895
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 11
diff changeset
896 # Play with custom metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 11
diff changeset
897 DoPut(_REMOTE, '/patients/%s/metadata/5555' % p, 'coucou')
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 11
diff changeset
898 m = DoGet(_REMOTE, '/patients/%s/metadata' % p)
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 11
diff changeset
899 self.assertEqual(2, len(m))
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 11
diff changeset
900 self.assertTrue('LastUpdate' in m)
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 11
diff changeset
901 self.assertTrue('5555' in m)
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 11
diff changeset
902 self.assertEqual('coucou', DoGet(_REMOTE, '/patients/%s/metadata/5555' % p))
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 11
diff changeset
903 DoPut(_REMOTE, '/patients/%s/metadata/5555' % p, 'hello')
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 11
diff changeset
904 self.assertEqual('hello', DoGet(_REMOTE, '/patients/%s/metadata/5555' % p))
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 11
diff changeset
905 DoDelete(_REMOTE, '/patients/%s/metadata/5555' % p)
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 11
diff changeset
906 m = DoGet(_REMOTE, '/patients/%s/metadata' % p)
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 11
diff changeset
907 self.assertEqual(1, len(m))
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 11
diff changeset
908 self.assertTrue('LastUpdate' in m)
13
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 12
diff changeset
909
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 12
diff changeset
910
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 12
diff changeset
911 def test_statistics(self):
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 12
diff changeset
912 # Upload 16 instances
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 12
diff changeset
913 for i in range(4):
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 12
diff changeset
914 UploadInstance(_REMOTE, 'Brainix/Flair/IM-0001-000%d.dcm' % (i + 1))
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 12
diff changeset
915 UploadInstance(_REMOTE, 'Brainix/Epi/IM-0001-000%d.dcm' % (i + 1))
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 12
diff changeset
916 UploadInstance(_REMOTE, 'Knee/T1/IM-0001-000%d.dcm' % (i + 1))
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 12
diff changeset
917 UploadInstance(_REMOTE, 'Knee/T2/IM-0001-000%d.dcm' % (i + 1))
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 12
diff changeset
918
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 12
diff changeset
919 s = DoGet(_REMOTE, '/statistics')
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 12
diff changeset
920 self.assertEqual(16, s['CountInstances'])
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 12
diff changeset
921 self.assertEqual(2, s['CountPatients'])
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 12
diff changeset
922 self.assertEqual(2, s['CountStudies'])
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 12
diff changeset
923 self.assertEqual(4, s['CountSeries'])
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 12
diff changeset
924 d = int(s['TotalUncompressedSize'])
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 12
diff changeset
925
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 12
diff changeset
926 e = 0
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 12
diff changeset
927 for patient in DoGet(_REMOTE, '/patients'):
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 12
diff changeset
928 s = DoGet(_REMOTE, '/patients/%s/statistics' % patient)
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 12
diff changeset
929 self.assertEqual(8, s['CountInstances'])
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 12
diff changeset
930 self.assertEqual(1, s['CountStudies'])
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 12
diff changeset
931 self.assertEqual(2, s['CountSeries'])
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 12
diff changeset
932 e += int(s['UncompressedSize'])
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 12
diff changeset
933
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 12
diff changeset
934 for study in DoGet(_REMOTE, '/studies'):
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 12
diff changeset
935 s = DoGet(_REMOTE, '/studies/%s/statistics' % study)
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 12
diff changeset
936 self.assertEqual(8, s['CountInstances'])
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 12
diff changeset
937 self.assertEqual(2, s['CountSeries'])
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 12
diff changeset
938 e += int(s['UncompressedSize'])
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 12
diff changeset
939
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 12
diff changeset
940 for series in DoGet(_REMOTE, '/series'):
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 12
diff changeset
941 s = DoGet(_REMOTE, '/series/%s/statistics' % series)
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 12
diff changeset
942 self.assertEqual(4, s['CountInstances'])
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 12
diff changeset
943 e += int(s['UncompressedSize'])
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 12
diff changeset
944
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 12
diff changeset
945 self.assertEqual(3 * d, e)
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 12
diff changeset
946
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 12
diff changeset
947
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 12
diff changeset
948 def test_custom_attachment(self):
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 12
diff changeset
949 UploadInstance(_REMOTE, 'Brainix/Flair/IM-0001-0001.dcm')
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 12
diff changeset
950 patient = DoGet(_REMOTE, '/patients')[0]
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 12
diff changeset
951 instance = DoGet(_REMOTE, '/instances')[0]
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 12
diff changeset
952 size = int(DoGet(_REMOTE, '/patients/%s/statistics' % patient)['DiskSize'])
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 12
diff changeset
953 self.assertEqual(size, int(DoGet(_REMOTE, '/statistics')['TotalDiskSize']))
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 12
diff changeset
954
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 12
diff changeset
955 self.assertEqual(0, len(DoGet(_REMOTE, '/patients/%s/attachments' % patient)))
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 12
diff changeset
956 self.assertEqual(2, len(DoGet(_REMOTE, '/instances/%s/attachments' % instance)))
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 12
diff changeset
957 self.assertTrue('dicom' in DoGet(_REMOTE, '/instances/%s/attachments' % instance))
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 12
diff changeset
958 self.assertTrue('dicom-as-json' in DoGet(_REMOTE, '/instances/%s/attachments' % instance))
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 12
diff changeset
959
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 12
diff changeset
960 self.assertRaises(Exception, lambda: DoPut(_REMOTE, '/patients/%s/attachments/22' % patient, 'hello'))
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 12
diff changeset
961 hello = 'hellohellohellohellohellohellohellohellohello'
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 12
diff changeset
962 DoPut(_REMOTE, '/patients/%s/attachments/1025' % patient, hello)
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 12
diff changeset
963 self.assertEqual(int(DoGet(_REMOTE, '/patients/%s/statistics' % patient)['DiskSize']),
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 12
diff changeset
964 int(DoGet(_REMOTE, '/statistics')['TotalDiskSize']))
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 12
diff changeset
965 self.assertEqual(int(DoGet(_REMOTE, '/patients/%s/statistics' % patient)['DiskSize']),
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 12
diff changeset
966 size + int(DoGet(_REMOTE, '/patients/%s/attachments/1025/compressed-size' % patient)))
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 12
diff changeset
967
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 12
diff changeset
968 DoPut(_REMOTE, '/patients/%s/attachments/1026' % patient, 'world')
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 12
diff changeset
969 self.assertEqual(int(DoGet(_REMOTE, '/patients/%s/statistics' % patient)['DiskSize']),
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 12
diff changeset
970 int(DoGet(_REMOTE, '/statistics')['TotalDiskSize']))
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 12
diff changeset
971 self.assertEqual(int(DoGet(_REMOTE, '/patients/%s/statistics' % patient)['DiskSize']),
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 12
diff changeset
972 size +
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 12
diff changeset
973 int(DoGet(_REMOTE, '/patients/%s/attachments/1025/compressed-size' % patient)) +
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 12
diff changeset
974 int(DoGet(_REMOTE, '/patients/%s/attachments/1026/compressed-size' % patient)))
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 12
diff changeset
975
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 12
diff changeset
976 self.assertEqual(2, len(DoGet(_REMOTE, '/patients/%s/attachments' % patient)))
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 12
diff changeset
977 self.assertEqual(hello, DoGet(_REMOTE, '/patients/%s/attachments/1025/data' % patient))
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 12
diff changeset
978 self.assertEqual('world', DoGet(_REMOTE, '/patients/%s/attachments/1026/data' % patient))
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 12
diff changeset
979 DoPost(_REMOTE, '/patients/%s/attachments/1025/verify-md5' % patient)
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 12
diff changeset
980 DoPost(_REMOTE, '/patients/%s/attachments/1026/verify-md5' % patient)
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 12
diff changeset
981 DoPut(_REMOTE, '/patients/%s/attachments/1026' % patient, 'world2')
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 12
diff changeset
982 self.assertEqual('world2', DoGet(_REMOTE, '/patients/%s/attachments/1026/data' % patient))
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 12
diff changeset
983
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 12
diff changeset
984 self.assertRaises(Exception, lambda: DoDelete(_REMOTE, '/instances/%s/attachments/dicom' % instance))
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 12
diff changeset
985 DoDelete(_REMOTE, '/patients/%s/attachments/1025' % patient)
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 12
diff changeset
986 self.assertEqual(int(DoGet(_REMOTE, '/patients/%s/statistics' % patient)['DiskSize']),
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 12
diff changeset
987 int(DoGet(_REMOTE, '/statistics')['TotalDiskSize']))
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 12
diff changeset
988 self.assertEqual(int(DoGet(_REMOTE, '/patients/%s/statistics' % patient)['DiskSize']),
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 12
diff changeset
989 size + int(DoGet(_REMOTE, '/patients/%s/attachments/1026/compressed-size' % patient)))
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 12
diff changeset
990
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 12
diff changeset
991 self.assertEqual(1, len(DoGet(_REMOTE, '/patients/%s/attachments' % patient)))
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 12
diff changeset
992 DoDelete(_REMOTE, '/patients/%s/attachments/1026' % patient)
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 12
diff changeset
993 self.assertEqual(0, len(DoGet(_REMOTE, '/patients/%s/attachments' % patient)))
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 12
diff changeset
994
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 12
diff changeset
995 self.assertEqual(int(DoGet(_REMOTE, '/patients/%s/statistics' % patient)['DiskSize']), size)
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 12
diff changeset
996 self.assertEqual(size, int(DoGet(_REMOTE, '/statistics')['TotalDiskSize']))
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 12
diff changeset
997
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 12
diff changeset
998
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 12
diff changeset
999 def test_incoming_storescu(self):
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 12
diff changeset
1000 self.assertEqual(0, len(DoGet(_REMOTE, '/patients')))
45
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 44
diff changeset
1001 subprocess.check_call([ FindExecutable('storescu'),
44
ffa542cce638 Toolbox.FindExecutable()
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 43
diff changeset
1002 _REMOTE['Server'], str(_REMOTE['DicomPort']),
13
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 12
diff changeset
1003 GetDatabasePath('ColorTestImageJ.dcm') ])
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 12
diff changeset
1004 self.assertEqual(1, len(DoGet(_REMOTE, '/patients')))
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 12
diff changeset
1005
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 12
diff changeset
1006
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 12
diff changeset
1007 def test_incoming_findscu(self):
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 12
diff changeset
1008 def CallFindScu(args):
45
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 44
diff changeset
1009 p = subprocess.Popen([ FindExecutable('findscu'),
44
ffa542cce638 Toolbox.FindExecutable()
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 43
diff changeset
1010 '-P', '-aec', _REMOTE['DicomAet'], '-aet', _LOCAL['DicomAet'],
13
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 12
diff changeset
1011 _REMOTE['Server'], str(_REMOTE['DicomPort']) ] + args,
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 12
diff changeset
1012 stderr=subprocess.PIPE)
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 12
diff changeset
1013 return p.communicate()[1]
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 12
diff changeset
1014
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 12
diff changeset
1015 UploadInstance(_REMOTE, 'Multiframe.dcm')
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 12
diff changeset
1016 UploadInstance(_REMOTE, 'ColorTestImageJ.dcm')
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 12
diff changeset
1017
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 12
diff changeset
1018 i = CallFindScu([ '-k', '0008,0052=PATIENT', '-k', '0010,0010' ])
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 12
diff changeset
1019 patientNames = re.findall('\(0010,0010\).*?\[(.*?)\]', i)
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 12
diff changeset
1020 self.assertEqual(2, len(patientNames))
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 12
diff changeset
1021 self.assertTrue('Test Patient BG ' in patientNames)
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 12
diff changeset
1022 self.assertTrue('Anonymized' in patientNames)
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 12
diff changeset
1023
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 12
diff changeset
1024 i = CallFindScu([ '-k', '0008,0052=SERIES', '-k', '0008,0021' ])
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 12
diff changeset
1025 series = re.findall('\(0008,0021\).*?\[\s*(.*?)\s*\]', i)
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 12
diff changeset
1026 self.assertEqual(2, len(series))
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 12
diff changeset
1027 self.assertTrue('20070208' in series)
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 12
diff changeset
1028 self.assertTrue('19980312' in series)
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 12
diff changeset
1029
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 12
diff changeset
1030 i = CallFindScu([ '-k', '0008,0052=SERIES', '-k', 'PatientName=Anonymized' ])
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 12
diff changeset
1031 series = re.findall('\(0010,0010\).*?\[\s*(.*?)\s*\]', i)
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 12
diff changeset
1032 self.assertEqual(1, len(series))
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 12
diff changeset
1033
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 12
diff changeset
1034 # Test the "CaseSentitivePN" flag (false by default)
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 12
diff changeset
1035 i = CallFindScu([ '-k', '0008,0052=SERIES', '-k', 'PatientName=anonymized' ])
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 12
diff changeset
1036 series = re.findall('\(0010,0010\).*?\[\s*(.*?)\s*\]', i)
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 12
diff changeset
1037 self.assertEqual(1, len(series))
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 12
diff changeset
1038
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 12
diff changeset
1039
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 12
diff changeset
1040 def test_incoming_movescu(self):
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 12
diff changeset
1041 def CallMoveScu(args):
45
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 44
diff changeset
1042 subprocess.check_call([ FindExecutable('movescu'),
17
7c8500991a12 karsten
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 15
diff changeset
1043 '--move', _LOCAL['DicomAet'], # Target AET (i.e. storescp)
7c8500991a12 karsten
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 15
diff changeset
1044 '--call', _REMOTE['DicomAet'], # Called AET (i.e. Orthanc)
7c8500991a12 karsten
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 15
diff changeset
1045 '--aetitle', _LOCAL['DicomAet'], # Calling AET (i.e. storescp)
13
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 12
diff changeset
1046 _REMOTE['Server'], str(_REMOTE['DicomPort']) ] + args,
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 12
diff changeset
1047 stderr=subprocess.PIPE)
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 12
diff changeset
1048
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 12
diff changeset
1049 UploadInstance(_REMOTE, 'Multiframe.dcm')
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 12
diff changeset
1050
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 12
diff changeset
1051 self.assertEqual(0, len(DoGet(_LOCAL, '/patients')))
17
7c8500991a12 karsten
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 15
diff changeset
1052 CallMoveScu([ '--patient', '-k', '0008,0052=PATIENT', '-k', 'PatientID=none' ])
13
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 12
diff changeset
1053 self.assertEqual(0, len(DoGet(_LOCAL, '/patients')))
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 12
diff changeset
1054 CallMoveScu([ '--patient', '-k', '0008,0052=PATIENT', '-k', 'PatientID=12345678' ])
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 12
diff changeset
1055 self.assertEqual(1, len(DoGet(_LOCAL, '/patients')))
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 12
diff changeset
1056
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 12
diff changeset
1057
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 12
diff changeset
1058 def test_findscu(self):
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 12
diff changeset
1059 i = UploadInstance(_REMOTE, 'DummyCT.dcm')['ID']
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 12
diff changeset
1060 j = UploadInstance(_REMOTE, 'Issue22.dcm')['ID']
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 12
diff changeset
1061 k = UploadInstance(_REMOTE, 'ColorTestImageJ.dcm')['ID']
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 12
diff changeset
1062 DoPost(_REMOTE, '/modalities/orthanctest/store', str(i), 'text/plain')
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 12
diff changeset
1063
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 12
diff changeset
1064 # Test the "find-patient" level
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 12
diff changeset
1065 p = DoPost(_REMOTE, '/modalities/orthanctest/find-patient', { })
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 12
diff changeset
1066 self.assertEqual(1, len(p))
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 12
diff changeset
1067 self.assertEqual('ozp00SjY2xG', p[0]['PatientID'])
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 12
diff changeset
1068
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 12
diff changeset
1069 # Test wildcards constraints. The "LO" value representation
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 12
diff changeset
1070 # for PatientID is always case-sensitive, but the "PN" for
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 12
diff changeset
1071 # PatientName might depend on the implementation:
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 12
diff changeset
1072 # "GenerateConfigurationForTests.py" will force it to be case
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 12
diff changeset
1073 # insensitive (which was the default until Orthanc 0.8.6).
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 12
diff changeset
1074 p = DoPost(_REMOTE, '/modalities/orthanctest/find-patient', { 'PatientName' : 'K*' })
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 12
diff changeset
1075 self.assertEqual(1, len(p))
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 12
diff changeset
1076
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 12
diff changeset
1077 p = DoPost(_REMOTE, '/modalities/orthanctest/find-patient', { 'PatientName' : 'k*' })
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 12
diff changeset
1078 self.assertEqual(1, len(p))
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 12
diff changeset
1079
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 12
diff changeset
1080 p = DoPost(_REMOTE, '/modalities/orthanctest/find-patient', { 'PatientID' : 'ozp*' })
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 12
diff changeset
1081 self.assertEqual(1, len(p))
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 12
diff changeset
1082
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 12
diff changeset
1083 p = DoPost(_REMOTE, '/modalities/orthanctest/find-patient', { 'PatientID' : 'o?p*' })
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 12
diff changeset
1084 self.assertEqual(1, len(p))
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 12
diff changeset
1085
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 12
diff changeset
1086 p = DoPost(_REMOTE, '/modalities/orthanctest/find-patient', { 'PatientID' : '0?q*' })
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 12
diff changeset
1087 self.assertEqual(0, len(p))
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 12
diff changeset
1088
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 12
diff changeset
1089 p = DoPost(_REMOTE, '/modalities/orthanctest/find-patient', { 'PatientName' : 'B*' })
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 12
diff changeset
1090 self.assertEqual(0, len(p))
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 12
diff changeset
1091
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 12
diff changeset
1092 p = DoPost(_REMOTE, '/modalities/orthanctest/find-patient', { 'PatientName' : 'b*' })
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 12
diff changeset
1093 self.assertEqual(0, len(p))
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 12
diff changeset
1094
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 12
diff changeset
1095 DoPost(_REMOTE, '/modalities/orthanctest/store', str(j), 'text/plain')
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 12
diff changeset
1096 DoPost(_REMOTE, '/modalities/orthanctest/store', str(k), 'text/plain')
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 12
diff changeset
1097 DoPost(_REMOTE, '/modalities/orthanctest/find-patient', { })
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 12
diff changeset
1098 self.assertEqual(3, len(DoPost(_REMOTE, '/modalities/orthanctest/find-patient', { })))
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 12
diff changeset
1099
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 12
diff changeset
1100 p = DoPost(_REMOTE, '/modalities/orthanctest/find-patient', { 'PatientName' : 'A*' })
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 12
diff changeset
1101 self.assertEqual(2, len(p))
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 12
diff changeset
1102
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 12
diff changeset
1103 # Test the "find-study" level. This is the instance "ColorTestImageJ.dcm"
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 12
diff changeset
1104 s = DoPost(_REMOTE, '/modalities/orthanctest/find-study', { 'PatientID' : 'B9uTHKOZ' })
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 12
diff changeset
1105 self.assertEqual(1, len(s))
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 12
diff changeset
1106 self.assertEqual('20070208', s[0]['StudyDate'])
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 12
diff changeset
1107
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 12
diff changeset
1108 # Test range searches
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 12
diff changeset
1109 t = DoPost(_REMOTE, '/modalities/orthanctest/find-study', { 'PatientID' : 'B9uTHKOZ',
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 12
diff changeset
1110 'StudyDate' : '-20070101' })
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 12
diff changeset
1111 self.assertEqual(0, len(t))
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 12
diff changeset
1112
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 12
diff changeset
1113 t = DoPost(_REMOTE, '/modalities/orthanctest/find-study', { 'PatientID' : 'B9uTHKOZ',
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 12
diff changeset
1114 'StudyDate' : '20090101-' })
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 12
diff changeset
1115 self.assertEqual(0, len(t))
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 12
diff changeset
1116
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 12
diff changeset
1117 t = DoPost(_REMOTE, '/modalities/orthanctest/find-study', { 'PatientID' : 'B9uTHKOZ',
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 12
diff changeset
1118 'StudyDate' : '20070101-' })
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 12
diff changeset
1119 self.assertEqual(1, len(t))
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 12
diff changeset
1120
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 12
diff changeset
1121 t = DoPost(_REMOTE, '/modalities/orthanctest/find-study', { 'PatientID' : 'B9uTHKOZ',
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 12
diff changeset
1122 'StudyDate' : '-20090101' })
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 12
diff changeset
1123 self.assertEqual(1, len(t))
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 12
diff changeset
1124
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 12
diff changeset
1125 t = DoPost(_REMOTE, '/modalities/orthanctest/find-study', { 'PatientID' : 'B9uTHKOZ',
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 12
diff changeset
1126 'StudyDate' : '20070207-20070207' })
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 12
diff changeset
1127 self.assertEqual(0, len(t))
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 12
diff changeset
1128
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 12
diff changeset
1129 t = DoPost(_REMOTE, '/modalities/orthanctest/find-study', { 'PatientID' : 'B9uTHKOZ',
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 12
diff changeset
1130 'StudyDate' : '20070208-20070208' })
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 12
diff changeset
1131 self.assertEqual(1, len(t))
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 12
diff changeset
1132
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 12
diff changeset
1133 t = DoPost(_REMOTE, '/modalities/orthanctest/find-study', { 'PatientID' : 'B9uTHKOZ',
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 12
diff changeset
1134 'StudyDate' : '20070209-20070209' })
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 12
diff changeset
1135 self.assertEqual(0, len(t))
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 12
diff changeset
1136
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 12
diff changeset
1137 # Test the ModalitiesInStudy tag
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 12
diff changeset
1138 t = DoPost(_REMOTE, '/modalities/orthanctest/find-study', {
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 12
diff changeset
1139 'PatientID' : 'B9uTHKOZ',
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 12
diff changeset
1140 'ModalitiesInStudy' : 'US' })
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 12
diff changeset
1141 self.assertEqual(0, len(t))
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 12
diff changeset
1142
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 12
diff changeset
1143 t = DoPost(_REMOTE, '/modalities/orthanctest/find-study', {
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 12
diff changeset
1144 'PatientID' : 'B9uTHKOZ',
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 12
diff changeset
1145 'ModalitiesInStudy' : 'CT' })
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 12
diff changeset
1146 self.assertEqual(1, len(t))
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 12
diff changeset
1147
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 12
diff changeset
1148 t = DoPost(_REMOTE, '/modalities/orthanctest/find-study', {
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 12
diff changeset
1149 'PatientID' : 'B9uTHKOZ',
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 12
diff changeset
1150 'ModalitiesInStudy' : 'US\\CT' })
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 12
diff changeset
1151 self.assertEqual(1, len(t))
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 12
diff changeset
1152
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 12
diff changeset
1153 # Test the "find-series" level
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 12
diff changeset
1154 t = DoPost(_REMOTE, '/modalities/orthanctest/find-series', {
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 12
diff changeset
1155 'PatientID' : 'B9uTHKOZ',
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 12
diff changeset
1156 'StudyInstanceUID' : s[0]['StudyInstanceUID'] })
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 12
diff changeset
1157 self.assertEqual(1, len(t))
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 12
diff changeset
1158
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 12
diff changeset
1159 # Test "\" separator
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 12
diff changeset
1160 t = DoPost(_REMOTE, '/modalities/orthanctest/find-series', {
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 12
diff changeset
1161 'PatientID' : 'B9uTHKOZ',
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 12
diff changeset
1162 'StudyInstanceUID' : s[0]['StudyInstanceUID'],
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 12
diff changeset
1163 'Modality' : 'MR\\CT\\US' })
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 12
diff changeset
1164 self.assertEqual(1, len(t))
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 12
diff changeset
1165
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 12
diff changeset
1166 t = DoPost(_REMOTE, '/modalities/orthanctest/find-series', {
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 12
diff changeset
1167 'PatientID' : 'B9uTHKOZ',
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 12
diff changeset
1168 'StudyInstanceUID' : s[0]['StudyInstanceUID'],
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 12
diff changeset
1169 'Modality' : 'MR\\US' })
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 12
diff changeset
1170 self.assertEqual(0, len(t))
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 12
diff changeset
1171
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 12
diff changeset
1172
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 12
diff changeset
1173 def test_update_modalities(self):
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 12
diff changeset
1174 try:
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 12
diff changeset
1175 DoDelete(_REMOTE, '/modalities/toto')
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 12
diff changeset
1176 except:
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 12
diff changeset
1177 pass
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 12
diff changeset
1178 try:
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 12
diff changeset
1179 DoDelete(_REMOTE, '/modalities/tata')
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 12
diff changeset
1180 except:
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 12
diff changeset
1181 pass
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 12
diff changeset
1182 self.assertRaises(Exception, lambda: DoGet(_REMOTE, '/modalities/toto'))
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 12
diff changeset
1183 DoPut(_REMOTE, '/modalities/toto', [ "STORESCP", "localhost", 2000 ])
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 12
diff changeset
1184 DoPut(_REMOTE, '/modalities/tata', [ "STORESCP", "localhost", 2000, 'MedInria' ])
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 12
diff changeset
1185 self.assertRaises(Exception, lambda: DoPut(_REMOTE, '/modalities/toto', [ "STORESCP", "localhost", 2000, 'MedInriaaa' ]))
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 12
diff changeset
1186 self.assertTrue('store' in DoGet(_REMOTE, '/modalities/toto'))
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 12
diff changeset
1187 self.assertTrue('store' in DoGet(_REMOTE, '/modalities/tata'))
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 12
diff changeset
1188 DoDelete(_REMOTE, '/modalities/toto')
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 12
diff changeset
1189 DoDelete(_REMOTE, '/modalities/tata')
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 12
diff changeset
1190 self.assertRaises(Exception, lambda: DoGet(_REMOTE, '/modalities/toto'))
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 12
diff changeset
1191 self.assertRaises(Exception, lambda: DoGet(_REMOTE, '/modalities/tata'))
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 12
diff changeset
1192
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 12
diff changeset
1193
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 12
diff changeset
1194 def test_update_peers(self):
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 12
diff changeset
1195 # curl -X PUT http://localhost:8042/peers/toto -d '["http://localhost:8042/"]' -v
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 12
diff changeset
1196 try:
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 12
diff changeset
1197 DoDelete(_REMOTE, '/peers/toto')
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 12
diff changeset
1198 except:
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 12
diff changeset
1199 pass
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 12
diff changeset
1200 try:
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 12
diff changeset
1201 DoDelete(_REMOTE, '/peers/tata')
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 12
diff changeset
1202 except:
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 12
diff changeset
1203 pass
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 12
diff changeset
1204 self.assertRaises(Exception, lambda: DoGet(_REMOTE, '/peers/toto'))
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 12
diff changeset
1205 DoPut(_REMOTE, '/peers/toto', [ 'http://localhost:8042/' ])
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 12
diff changeset
1206 DoPut(_REMOTE, '/peers/tata', [ 'http://localhost:8042/', 'user', 'pass' ])
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 12
diff changeset
1207 self.assertRaises(Exception, lambda: DoPut(_REMOTE, '/peers/toto', [ 'http://localhost:8042/', 'a' ]))
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 12
diff changeset
1208 self.assertRaises(Exception, lambda: DoPut(_REMOTE, '/peers/toto', [ 'http://localhost:8042/', 'a', 'b', 'c' ]))
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 12
diff changeset
1209 self.assertTrue('store' in DoGet(_REMOTE, '/peers/toto'))
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 12
diff changeset
1210 self.assertTrue('store' in DoGet(_REMOTE, '/peers/tata'))
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 12
diff changeset
1211 DoDelete(_REMOTE, '/peers/toto')
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 12
diff changeset
1212 DoDelete(_REMOTE, '/peers/tata')
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 12
diff changeset
1213 self.assertRaises(Exception, lambda: DoGet(_REMOTE, '/peers/toto'))
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 12
diff changeset
1214 self.assertRaises(Exception, lambda: DoGet(_REMOTE, '/peers/tata'))
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 12
diff changeset
1215
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 12
diff changeset
1216
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 12
diff changeset
1217 def test_mesterhazy_modification(self):
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 12
diff changeset
1218 # When I modify a series ( eg. curl
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 12
diff changeset
1219 # http://localhost:8042/series/uidhere/modify -X POST -d
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 12
diff changeset
1220 # '{"Replace":{"SeriesDate":"19990101"}}' ) the modified
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 12
diff changeset
1221 # series is added to a new Study, instead of the existing
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 12
diff changeset
1222 # Study. Fixed in Orthanc 0.7.5
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 12
diff changeset
1223
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 12
diff changeset
1224 u = UploadInstance(_REMOTE, 'DummyCT.dcm')
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 12
diff changeset
1225 study = 'b9c08539-26f93bde-c81ab0d7-bffaf2cb-a4d0bdd0'
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 12
diff changeset
1226 series = 'f2635388-f01d497a-15f7c06b-ad7dba06-c4c599fe'
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 12
diff changeset
1227
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 12
diff changeset
1228 modified = DoPost(_REMOTE, '/series/%s/modify' % series,
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 12
diff changeset
1229 json.dumps({ "Replace" : { "SeriesDate" : "19990101" }}))
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 12
diff changeset
1230
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 12
diff changeset
1231 self.assertEqual(study, DoGet(_REMOTE, '/series/%s' % modified['ID']) ['ParentStudy'])
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 12
diff changeset
1232
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 12
diff changeset
1233
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 12
diff changeset
1234 def test_create(self):
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 12
diff changeset
1235 i = DoPost(_REMOTE, '/tools/create-dicom',
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 12
diff changeset
1236 json.dumps({
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 12
diff changeset
1237 'PatientName' : 'Jodogne',
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 12
diff changeset
1238 'Modality' : 'CT',
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 12
diff changeset
1239 'PixelData' : 'data:image/png;base64,iVBORw0KGgoAAAANSUhEUgAAAAUAAAAFCAYAAACNbyblAAAAHElEQVQI12P4//8/w38GIAXDIBKE0DHxgljNBAAO9TXL0Y4OHwAAAABJRU5ErkJggg==' # red dot in RGBA
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 12
diff changeset
1240 }))
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 12
diff changeset
1241
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 12
diff changeset
1242 self.assertEqual('Jodogne', DoGet(_REMOTE, '/instances/%s/content/PatientName' % i['ID']).strip())
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 12
diff changeset
1243 self.assertEqual('CT', DoGet(_REMOTE, '/instances/%s/content/Modality' % i['ID']).strip())
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 12
diff changeset
1244
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 12
diff changeset
1245 png = GetImage(_REMOTE, '/instances/%s/preview' % i['ID'])
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 12
diff changeset
1246 self.assertEqual((5, 5), png.size)
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 12
diff changeset
1247
38
d147e36c6d18 test_create_series
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 37
diff changeset
1248 j = DoGet(_REMOTE, i['Path'])
d147e36c6d18 test_create_series
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 37
diff changeset
1249 self.assertEqual('Instance', j['Type'])
d147e36c6d18 test_create_series
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 37
diff changeset
1250 self.assertEqual(j['ID'], i['ID'])
d147e36c6d18 test_create_series
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 37
diff changeset
1251
13
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 12
diff changeset
1252
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 12
diff changeset
1253 def test_pilates(self):
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 12
diff changeset
1254 # "SCU failed error when accessing orthanc with osirix" by
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 12
diff changeset
1255 # Pilates Agentur (Mar 10, 2014 at 9:33 PM)
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 12
diff changeset
1256 i = UploadInstance(_REMOTE, 'PilatesArgenturGEUltrasoundOsiriX.dcm')['ID']
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 12
diff changeset
1257 self.assertEqual(0, len(DoGet(_LOCAL, '/patients')))
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 12
diff changeset
1258 j = DoPost(_REMOTE, '/modalities/orthanctest/store', str(i), 'text/plain')
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 12
diff changeset
1259 self.assertEqual(1, len(DoGet(_LOCAL, '/patients')))
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 12
diff changeset
1260
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 12
diff changeset
1261
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 12
diff changeset
1262 def test_shared_tags(self):
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 12
diff changeset
1263 a = UploadInstance(_REMOTE, 'Knee/T1/IM-0001-0001.dcm')['ID']
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 12
diff changeset
1264 b = UploadInstance(_REMOTE, 'Knee/T1/IM-0001-0002.dcm')['ID']
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 12
diff changeset
1265 p = DoGet(_REMOTE, '/patients')[0]
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 12
diff changeset
1266
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 12
diff changeset
1267 self.assertTrue('0010,0010' in DoGet(_REMOTE, '/patients/%s/shared-tags' % p))
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 12
diff changeset
1268 self.assertTrue('PatientName' in DoGet(_REMOTE, '/patients/%s/shared-tags?simplify' % p))
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 12
diff changeset
1269 self.assertTrue('0008,1030' in DoGet(_REMOTE, '/patients/%s/shared-tags' % p))
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 12
diff changeset
1270 self.assertTrue('StudyDescription' in DoGet(_REMOTE, '/patients/%s/shared-tags?simplify' % p))
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 12
diff changeset
1271 self.assertTrue('0008,103e' in DoGet(_REMOTE, '/patients/%s/shared-tags' % p))
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 12
diff changeset
1272 self.assertTrue('SeriesDescription' in DoGet(_REMOTE, '/patients/%s/shared-tags?simplify' % p))
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 12
diff changeset
1273 self.assertFalse('0008,0018' in DoGet(_REMOTE, '/patients/%s/shared-tags' % p))
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 12
diff changeset
1274 self.assertFalse('SOPInstanceUID' in DoGet(_REMOTE, '/patients/%s/shared-tags?simplify' % p))
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 12
diff changeset
1275
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 12
diff changeset
1276 self.assertTrue('0008,0018' in DoGet(_REMOTE, '/instances/%s/tags' % a))
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 12
diff changeset
1277 self.assertTrue('SOPInstanceUID' in DoGet(_REMOTE, '/instances/%s/tags?simplify' % a))
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 12
diff changeset
1278
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 12
diff changeset
1279
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 12
diff changeset
1280 def test_modules(self):
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 12
diff changeset
1281 a = UploadInstance(_REMOTE, 'Knee/T1/IM-0001-0001.dcm')['ID']
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 12
diff changeset
1282 p = DoGet(_REMOTE, '/patients')[0]
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 12
diff changeset
1283 s = DoGet(_REMOTE, '/studies')[0]
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 12
diff changeset
1284 t = DoGet(_REMOTE, '/series')[0]
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 12
diff changeset
1285
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 12
diff changeset
1286 self.assertTrue('0010,0010' in DoGet(_REMOTE, '/patients/%s/module' % p))
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 12
diff changeset
1287 self.assertTrue('PatientName' in DoGet(_REMOTE, '/patients/%s/module?simplify' % p))
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 12
diff changeset
1288 self.assertTrue('0010,0010' in DoGet(_REMOTE, '/studies/%s/module-patient' % p))
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 12
diff changeset
1289 self.assertTrue('PatientName' in DoGet(_REMOTE, '/studies/%s/module-patient?simplify' % p))
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 12
diff changeset
1290 self.assertTrue('0008,1030' in DoGet(_REMOTE, '/studies/%s/module' % s))
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 12
diff changeset
1291 self.assertTrue('StudyDescription' in DoGet(_REMOTE, '/studies/%s/module?simplify' % s))
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 12
diff changeset
1292 self.assertTrue('0008,103e' in DoGet(_REMOTE, '/series/%s/module' % p))
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 12
diff changeset
1293 self.assertTrue('SeriesDescription' in DoGet(_REMOTE, '/series/%s/module?simplify' % p))
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 12
diff changeset
1294 self.assertTrue('0008,0018' in DoGet(_REMOTE, '/instances/%s/module' % a))
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 12
diff changeset
1295 self.assertTrue('SOPInstanceUID' in DoGet(_REMOTE, '/instances/%s/module?simplify' % a))
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 12
diff changeset
1296
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 12
diff changeset
1297
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 12
diff changeset
1298 def test_auto_directory(self):
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 12
diff changeset
1299 a = UploadInstance(_REMOTE, 'Knee/T1/IM-0001-0001.dcm')['ID']
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 12
diff changeset
1300 self.assertTrue('now' in DoGet(_REMOTE, '/tools'))
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 12
diff changeset
1301 self.assertTrue('dicom-conformance' in DoGet(_REMOTE, '/tools'))
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 12
diff changeset
1302 self.assertTrue(len(DoGet(_REMOTE, '/tools/dicom-conformance')) > 1000)
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 12
diff changeset
1303 self.assertTrue('orthanctest' in DoGet(_REMOTE, '/modalities'))
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 12
diff changeset
1304 self.assertTrue('echo' in DoGet(_REMOTE, '/modalities/orthanctest'))
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 12
diff changeset
1305 self.assertTrue('find' in DoGet(_REMOTE, '/modalities/orthanctest'))
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 12
diff changeset
1306 self.assertTrue('find-instance' in DoGet(_REMOTE, '/modalities/orthanctest'))
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 12
diff changeset
1307 self.assertTrue('find-patient' in DoGet(_REMOTE, '/modalities/orthanctest'))
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 12
diff changeset
1308 self.assertTrue('find-series' in DoGet(_REMOTE, '/modalities/orthanctest'))
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 12
diff changeset
1309 self.assertTrue('find-study' in DoGet(_REMOTE, '/modalities/orthanctest'))
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 12
diff changeset
1310 self.assertTrue('store' in DoGet(_REMOTE, '/modalities/orthanctest'))
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 12
diff changeset
1311 self.assertTrue('store' in DoGet(_REMOTE, '/peers/peer'))
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 12
diff changeset
1312 self.assertTrue('matlab' in DoGet(_REMOTE, '/instances/%s/frames/0' % a))
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 12
diff changeset
1313 self.assertRaises(Exception, lambda: DoGet(_REMOTE, '/tools/nope'))
28
156c7ae164b5 new test
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 27
diff changeset
1314 self.assertRaises(Exception, lambda: DoGet(_REMOTE, '/nope'))
156c7ae164b5 new test
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 27
diff changeset
1315 self.assertRaises(Exception, lambda: DoGet(_REMOTE, '/nope/nope.html'))
156c7ae164b5 new test
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 27
diff changeset
1316 self.assertEqual(404, DoGetRaw(_REMOTE, '/nope')[0].status)
156c7ae164b5 new test
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 27
diff changeset
1317 self.assertEqual(404, DoGetRaw(_REMOTE, '/nope/nope.html')[0].status)
13
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 12
diff changeset
1318
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 12
diff changeset
1319
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 12
diff changeset
1320 def test_echo(self):
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 12
diff changeset
1321 DoPost(_REMOTE, '/modalities/orthanctest/echo')
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 12
diff changeset
1322
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 12
diff changeset
1323
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 12
diff changeset
1324 def test_xml(self):
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 12
diff changeset
1325 json = DoGet(_REMOTE, '/tools', headers = { 'accept' : 'application/json' })
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 12
diff changeset
1326 xml = minidom.parseString(DoGet(_REMOTE, '/tools', headers = { 'accept' : 'application/xml' }))
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 12
diff changeset
1327 items = xml.getElementsByTagName('root')[0].getElementsByTagName('item')
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 12
diff changeset
1328 self.assertEqual(len(items), len(json))
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 12
diff changeset
1329
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 12
diff changeset
1330 self.assertTrue('dicom-conformance' in json)
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 12
diff changeset
1331
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 12
diff changeset
1332 ok = False
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 12
diff changeset
1333 for i in items:
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 12
diff changeset
1334 if i.childNodes[0].data == 'dicom-conformance':
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 12
diff changeset
1335 ok = True
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 12
diff changeset
1336 self.assertTrue(ok)
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 12
diff changeset
1337
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 12
diff changeset
1338
46
85b2e36ed392 explicit GoogleCode source
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 45
diff changeset
1339 def test_googlecode_issue_16(self):
13
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 12
diff changeset
1340 i = UploadInstance(_REMOTE, 'Issue16.dcm')['ID']
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 12
diff changeset
1341 t = DoGet(_REMOTE, '/instances/%s/tags?simplify' % i)['FrameIncrementPointer']
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 12
diff changeset
1342 self.assertEqual('0018,1063', t)
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 12
diff changeset
1343
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 12
diff changeset
1344
46
85b2e36ed392 explicit GoogleCode source
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 45
diff changeset
1345 def test_googlecode_issue_22(self):
13
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 12
diff changeset
1346 s = UploadInstance(_REMOTE, 'Issue22.dcm')['ID']
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 12
diff changeset
1347 a = [
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 12
diff changeset
1348 "f804691f62197040438f4627c6b994f1", # Frame 0
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 12
diff changeset
1349 "c69eee9a51eea3e8611e82e578897254",
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 12
diff changeset
1350 "315666be83e2d0111c77bc0996d84901",
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 12
diff changeset
1351 "3e27aa959d911172c48a1436443c72b1",
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 12
diff changeset
1352 "958642c9e7e9d232d3869faff546058c",
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 12
diff changeset
1353 "5e7ea8e3e4230cae707d143481355c59",
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 12
diff changeset
1354 "eda37f83558d858a596175aed8b2ad47",
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 12
diff changeset
1355 "486713bd2895c4ecbe0e97715ac7f80a",
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 12
diff changeset
1356 "091ef729eb169e67da8a0faa9631f9a8",
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 12
diff changeset
1357 "5aa2b8c7ffe0a483efaa8e12417686ca",
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 12
diff changeset
1358 "e2f39e85896fe58876654b94cd0b5013",
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 12
diff changeset
1359 "6fd2129e4950abbe1be053bc814d5da8",
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 12
diff changeset
1360 "c3331a8ba7a757f3d423735ab7fa81f9",
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 12
diff changeset
1361 "746f808582156734dd6b6fdfd3a0b72c",
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 12
diff changeset
1362 "8075ea2b227a70c60ea6b7b75a6bb190",
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 12
diff changeset
1363 "806b8b3e300c615099c11a5ec23465aa",
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 12
diff changeset
1364 "7c836aa298ba6eef96434579af631a11",
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 12
diff changeset
1365 "a0357dc9f4f72d73a885c33d7c287446",
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 12
diff changeset
1366 "f25ba3be1cc7d7fad95706adc199ea7d",
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 12
diff changeset
1367 "8b114c526b8cbed6cad8a3248b7b480c",
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 12
diff changeset
1368 "44e6670f127e612a2b4aa60a0d207698",
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 12
diff changeset
1369 "b8945f90fe02facf2ace24ca1ecbe0a5",
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 12
diff changeset
1370 "95c796c2fa8f59018b15cf2987b1f79b",
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 12
diff changeset
1371 "ce0a51ab30224205b44920221dc27351", # Frame 23
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 12
diff changeset
1372 ]
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 12
diff changeset
1373
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 12
diff changeset
1374 self.assertEqual(24, len(DoGet(_REMOTE, '/instances/%s/frames' % s)))
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 12
diff changeset
1375 self.assertRaises(Exception, lambda: DoGet(_REMOTE, '/instances/%s/frames/24/preview' % s))
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 12
diff changeset
1376
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 12
diff changeset
1377 for i in range(len(a)):
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 12
diff changeset
1378 self.assertEqual(a[i], ComputeMD5(DoGet(_REMOTE, '/instances/%s/frames/%d/preview' % (s, i))))
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 12
diff changeset
1379
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 12
diff changeset
1380
46
85b2e36ed392 explicit GoogleCode source
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 45
diff changeset
1381 def test_googlecode_issue_19(self):
21
2a29bcff60a7 tests of image decoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 18
diff changeset
1382 # This is an image with "YBR_FULL" photometric interpretation, it is not supported by Orthanc
13
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 12
diff changeset
1383 # gdcmconv -i /home/jodogne/DICOM/GdcmDatabase/US_DataSet/HDI5000_US/3EAF5E01 -w -o Issue19.dcm
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 12
diff changeset
1384
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 12
diff changeset
1385 a = UploadInstance(_REMOTE, 'Issue19.dcm')['ID']
21
2a29bcff60a7 tests of image decoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 18
diff changeset
1386 self.assertRaises(Exception, lambda: DoGet(_REMOTE, '/instances/941ad3c8-05d05b88-560459f9-0eae0e20-6cddd533/preview'))
13
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 12
diff changeset
1387
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 12
diff changeset
1388
46
85b2e36ed392 explicit GoogleCode source
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 45
diff changeset
1389 def test_googlecode_issue_37(self):
13
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 12
diff changeset
1390 # Same test for issues 35 and 37. Fixed in Orthanc 0.9.1
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 12
diff changeset
1391 u = UploadInstance(_REMOTE, 'Beaufix/IM-0001-0001.dcm')['ID']
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 12
diff changeset
1392
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 12
diff changeset
1393 a = DoPost(_REMOTE, '/tools/find', { 'Level' : 'Series',
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 12
diff changeset
1394 'CaseSensitive' : True,
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 12
diff changeset
1395 'Query' : { 'StationName' : 'SMR4-MP3' }})
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 12
diff changeset
1396 self.assertEqual(1, len(a))
14
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 13
diff changeset
1397
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 13
diff changeset
1398
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 13
diff changeset
1399 def test_rest_find(self):
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 13
diff changeset
1400 # Upload 8 instances
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 13
diff changeset
1401 for i in range(2):
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 13
diff changeset
1402 UploadInstance(_REMOTE, 'Brainix/Flair/IM-0001-000%d.dcm' % (i + 1))
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 13
diff changeset
1403 UploadInstance(_REMOTE, 'Brainix/Epi/IM-0001-000%d.dcm' % (i + 1))
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 13
diff changeset
1404 UploadInstance(_REMOTE, 'Knee/T1/IM-0001-000%d.dcm' % (i + 1))
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 13
diff changeset
1405 UploadInstance(_REMOTE, 'Knee/T2/IM-0001-000%d.dcm' % (i + 1))
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 13
diff changeset
1406
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 13
diff changeset
1407 a = DoPost(_REMOTE, '/tools/find', { 'Level' : 'Patient',
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 13
diff changeset
1408 'CaseSensitive' : False,
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 13
diff changeset
1409 'Query' : { 'PatientName' : '*n*' }})
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 13
diff changeset
1410 self.assertEqual(2, len(a))
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 13
diff changeset
1411
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 13
diff changeset
1412 a = DoPost(_REMOTE, '/tools/find', { 'Level' : 'Patient',
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 13
diff changeset
1413 'CaseSensitive' : True,
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 13
diff changeset
1414 'Query' : { 'PatientName' : '*n*' }})
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 13
diff changeset
1415 self.assertEqual(0, len(a))
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 13
diff changeset
1416
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 13
diff changeset
1417 a = DoPost(_REMOTE, '/tools/find', { 'Expand' : True,
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 13
diff changeset
1418 'Level' : 'Patient',
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 13
diff changeset
1419 'CaseSensitive' : False,
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 13
diff changeset
1420 'Query' : { 'PatientName' : '*ne*' }})
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 13
diff changeset
1421 self.assertEqual(1, len(a))
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 13
diff changeset
1422 self.assertEqual('20080822', a[0]['MainDicomTags']['PatientBirthDate'])
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 13
diff changeset
1423
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 13
diff changeset
1424 a = DoPost(_REMOTE, '/tools/find', { 'Level' : 'Patient',
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 13
diff changeset
1425 'CaseSensitive' : True,
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 13
diff changeset
1426 'Query' : { 'PatientName' : '*ne*' }})
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 13
diff changeset
1427 self.assertEqual(0, len(a))
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 13
diff changeset
1428
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 13
diff changeset
1429 a = DoPost(_REMOTE, '/tools/find', { 'Level' : 'Study',
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 13
diff changeset
1430 'CaseSensitive' : True,
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 13
diff changeset
1431 'Query' : { 'PatientName' : '*NE*' }})
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 13
diff changeset
1432 self.assertEqual(1, len(a))
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 13
diff changeset
1433
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 13
diff changeset
1434 a = DoPost(_REMOTE, '/tools/find', { 'Level' : 'Series',
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 13
diff changeset
1435 'CaseSensitive' : True,
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 13
diff changeset
1436 'Query' : { 'PatientName' : '*NE*' }})
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 13
diff changeset
1437 self.assertEqual(2, len(a))
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 13
diff changeset
1438
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 13
diff changeset
1439 a = DoPost(_REMOTE, '/tools/find', { 'Level' : 'Instance',
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 13
diff changeset
1440 'CaseSensitive' : True,
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 13
diff changeset
1441 'Query' : { 'PatientName' : '*NE*' }})
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 13
diff changeset
1442 self.assertEqual(4, len(a))
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 13
diff changeset
1443
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 13
diff changeset
1444 a = DoPost(_REMOTE, '/tools/find', { 'Level' : 'Patient', 'Query' : { }})
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 13
diff changeset
1445 self.assertEqual(2, len(a))
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 13
diff changeset
1446
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 13
diff changeset
1447 a = DoPost(_REMOTE, '/tools/find', { 'Level' : 'Study', 'Query' : { }})
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 13
diff changeset
1448 self.assertEqual(2, len(a))
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 13
diff changeset
1449
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 13
diff changeset
1450 a = DoPost(_REMOTE, '/tools/find', { 'Level' : 'Series', 'Query' : { }})
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 13
diff changeset
1451 self.assertEqual(4, len(a))
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 13
diff changeset
1452
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 13
diff changeset
1453 a = DoPost(_REMOTE, '/tools/find', { 'Level' : 'Instance', 'Query' : { }})
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 13
diff changeset
1454 self.assertEqual(8, len(a))
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 13
diff changeset
1455
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 13
diff changeset
1456
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 13
diff changeset
1457 def test_rest_query_retrieve(self):
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 13
diff changeset
1458 self.assertEqual(0, len(DoGet(_REMOTE, '/patients')))
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 13
diff changeset
1459
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 13
diff changeset
1460 # Upload 8 instances
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 13
diff changeset
1461 for i in range(2):
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 13
diff changeset
1462 UploadInstance(_REMOTE, 'Brainix/Flair/IM-0001-000%d.dcm' % (i + 1))
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 13
diff changeset
1463 UploadInstance(_REMOTE, 'Brainix/Epi/IM-0001-000%d.dcm' % (i + 1))
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 13
diff changeset
1464 UploadInstance(_REMOTE, 'Knee/T1/IM-0001-000%d.dcm' % (i + 1))
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 13
diff changeset
1465 UploadInstance(_REMOTE, 'Knee/T2/IM-0001-000%d.dcm' % (i + 1))
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 13
diff changeset
1466
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 13
diff changeset
1467 self.assertEqual(2, len(DoGet(_REMOTE, '/patients')))
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 13
diff changeset
1468 for p in DoGet(_REMOTE, '/patients'):
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 13
diff changeset
1469 DoPost(_REMOTE, '/modalities/orthanctest/store', p)
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 13
diff changeset
1470 DoDelete(_REMOTE, '/patients/%s' % p)
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 13
diff changeset
1471
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 13
diff changeset
1472 for q in DoGet(_REMOTE, '/queries'):
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 13
diff changeset
1473 DoDelete(_REMOTE, '/queries/%s' % q)
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 13
diff changeset
1474
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 13
diff changeset
1475 self.assertEqual(0, len(DoGet(_REMOTE, '/patients')))
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 13
diff changeset
1476 self.assertEqual(0, len(DoGet(_REMOTE, '/queries')))
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 13
diff changeset
1477 a = DoPost(_REMOTE, '/modalities/orthanctest/query', { 'Level' : 'Series',
27
cde1691838d3 wildcard test
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 26
diff changeset
1478 'Query' : {
cde1691838d3 wildcard test
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 26
diff changeset
1479 'PatientName' : '*NE*',
cde1691838d3 wildcard test
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 26
diff changeset
1480 'StudyDate' : '*',
cde1691838d3 wildcard test
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 26
diff changeset
1481 }})['ID']
14
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 13
diff changeset
1482 self.assertEqual(1, len(DoGet(_REMOTE, '/queries')))
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 13
diff changeset
1483
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 13
diff changeset
1484 b = DoGet(_REMOTE, '/queries/%s' % a)
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 13
diff changeset
1485 self.assertTrue('answers' in b)
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 13
diff changeset
1486 self.assertTrue('level' in b)
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 13
diff changeset
1487 self.assertTrue('modality' in b)
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 13
diff changeset
1488 self.assertTrue('query' in b)
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 13
diff changeset
1489 self.assertTrue('retrieve' in b)
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 13
diff changeset
1490 self.assertEqual('Series', DoGet(_REMOTE, '/queries/%s/level' % a))
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 13
diff changeset
1491 self.assertEqual('orthanctest', DoGet(_REMOTE, '/queries/%s/modality' % a))
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 13
diff changeset
1492
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 13
diff changeset
1493 q = DoGet(_REMOTE, '/queries/%s/query?simplify' % a)
27
cde1691838d3 wildcard test
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 26
diff changeset
1494 self.assertEqual(2, len(q))
14
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 13
diff changeset
1495 self.assertTrue('PatientName' in q)
27
cde1691838d3 wildcard test
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 26
diff changeset
1496 self.assertTrue('StudyDate' in q)
14
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 13
diff changeset
1497 self.assertEqual('*NE*', q['PatientName'])
27
cde1691838d3 wildcard test
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 26
diff changeset
1498 self.assertEqual('*', q['StudyDate'])
14
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 13
diff changeset
1499
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 13
diff changeset
1500 self.assertEqual(2, len(DoGet(_REMOTE, '/queries/%s/answers' % a)))
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 13
diff changeset
1501
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 13
diff changeset
1502 s = DoGet(_REMOTE, '/queries/%s/answers/0' % a)
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 13
diff changeset
1503 self.assertTrue('content' in s)
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 13
diff changeset
1504 self.assertTrue('retrieve' in s)
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 13
diff changeset
1505
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 13
diff changeset
1506 s = DoGet(_REMOTE, '/queries/%s/answers/0/content?simplify' % a)
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 13
diff changeset
1507 self.assertEqual('887', s['PatientID'])
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 13
diff changeset
1508 self.assertEqual('2.16.840.1.113669.632.20.121711.10000160881', s['StudyInstanceUID'])
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 13
diff changeset
1509
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 13
diff changeset
1510 self.assertEqual(0, len(DoGet(_REMOTE, '/patients')))
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 13
diff changeset
1511 DoPost(_REMOTE, '/queries/%s/answers/0/retrieve' % a, 'ORTHANC')
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 13
diff changeset
1512 self.assertEqual(1, len(DoGet(_REMOTE, '/patients')))
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 13
diff changeset
1513 self.assertEqual(1, len(DoGet(_REMOTE, '/studies')))
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 13
diff changeset
1514 self.assertEqual(1, len(DoGet(_REMOTE, '/series')))
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 13
diff changeset
1515 self.assertEqual(2, len(DoGet(_REMOTE, '/instances')))
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 13
diff changeset
1516
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 13
diff changeset
1517 DoPost(_REMOTE, '/queries/%s/answers/1/retrieve' % a, 'ORTHANC')
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 13
diff changeset
1518 self.assertEqual(1, len(DoGet(_REMOTE, '/patients')))
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 13
diff changeset
1519 self.assertEqual(1, len(DoGet(_REMOTE, '/studies')))
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 13
diff changeset
1520 self.assertEqual(2, len(DoGet(_REMOTE, '/series')))
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 13
diff changeset
1521 self.assertEqual(4, len(DoGet(_REMOTE, '/instances')))
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 13
diff changeset
1522
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 13
diff changeset
1523 DoDelete(_REMOTE, '/queries/%s' % a)
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 13
diff changeset
1524 self.assertEqual(0, len(DoGet(_REMOTE, '/queries')))
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 13
diff changeset
1525
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 13
diff changeset
1526
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 13
diff changeset
1527 def test_parent(self):
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 13
diff changeset
1528 u = UploadInstance(_REMOTE, 'DummyCT.dcm')['ID']
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 13
diff changeset
1529 patient = '6816cb19-844d5aee-85245eba-28e841e6-2414fae2'
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 13
diff changeset
1530 study = 'b9c08539-26f93bde-c81ab0d7-bffaf2cb-a4d0bdd0'
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 13
diff changeset
1531 series = 'f2635388-f01d497a-15f7c06b-ad7dba06-c4c599fe'
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 13
diff changeset
1532 instance = '66a662ce-7430e543-bad44d47-0dc5a943-ec7a538d'
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 13
diff changeset
1533 self.assertEqual(instance, u);
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 13
diff changeset
1534
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 13
diff changeset
1535 a = DoGet(_REMOTE, '/studies/%s/patient' % study)
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 13
diff changeset
1536 self.assertEqual('Patient', a['Type'])
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 13
diff changeset
1537 self.assertEqual(patient, a['ID'])
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 13
diff changeset
1538
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 13
diff changeset
1539 a = DoGet(_REMOTE, '/series/%s/patient' % series)
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 13
diff changeset
1540 self.assertEqual('Patient', a['Type'])
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 13
diff changeset
1541 self.assertEqual(patient, a['ID'])
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 13
diff changeset
1542
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 13
diff changeset
1543 a = DoGet(_REMOTE, '/series/%s/study' % series)
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 13
diff changeset
1544 self.assertEqual('Study', a['Type'])
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 13
diff changeset
1545 self.assertEqual(study, a['ID'])
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 13
diff changeset
1546
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 13
diff changeset
1547 a = DoGet(_REMOTE, '/instances/%s/patient' % instance)
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 13
diff changeset
1548 self.assertEqual('Patient', a['Type'])
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 13
diff changeset
1549 self.assertEqual(patient, a['ID'])
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 13
diff changeset
1550
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 13
diff changeset
1551 a = DoGet(_REMOTE, '/instances/%s/study' % instance)
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 13
diff changeset
1552 self.assertEqual('Study', a['Type'])
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 13
diff changeset
1553 self.assertEqual(study, a['ID'])
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 13
diff changeset
1554
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 13
diff changeset
1555 a = DoGet(_REMOTE, '/instances/%s/series' % instance)
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 13
diff changeset
1556 self.assertEqual('Series', a['Type'])
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 13
diff changeset
1557 self.assertEqual(series, a['ID'])
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 13
diff changeset
1558
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 13
diff changeset
1559
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 13
diff changeset
1560 def test_shanon(self):
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 13
diff changeset
1561 def Anonymize(instance, replacements = {}):
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 13
diff changeset
1562 return DoPost(_REMOTE, '/instances/%s/anonymize' % instance, { 'Replace' : replacements }, 'application/json')
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 13
diff changeset
1563
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 13
diff changeset
1564 self.assertEqual(0, len(DoGet(_REMOTE, '/instances')))
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 13
diff changeset
1565 u = UploadInstance(_REMOTE, 'DummyCT.dcm')['ID']
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 13
diff changeset
1566 self.assertEqual(1, len(DoGet(_REMOTE, '/instances')))
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 13
diff changeset
1567
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 13
diff changeset
1568 tags = [ 'PatientID', 'StudyInstanceUID', 'SeriesInstanceUID', 'SOPInstanceUID', 'DeidentificationMethod' ]
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 13
diff changeset
1569 ids = [ 'ozp00SjY2xG',
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 13
diff changeset
1570 '1.2.840.113619.2.176.2025.1499492.7391.1171285944.390',
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 13
diff changeset
1571 '1.2.840.113619.2.176.2025.1499492.7391.1171285944.394',
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 13
diff changeset
1572 '1.2.840.113619.2.176.2025.1499492.7040.1171286242.109' ]
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 13
diff changeset
1573
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 13
diff changeset
1574 a = ExtractDicomTags(Anonymize(u), tags)
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 13
diff changeset
1575 for i in range(4):
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 13
diff changeset
1576 self.assertNotEqual(ids[i], a[i])
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 13
diff changeset
1577 self.assertTrue(a[4].startswith('Orthanc'))
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 13
diff changeset
1578
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 13
diff changeset
1579 a = ExtractDicomTags(Anonymize(u, { 'PatientName' : 'toto' }), tags)
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 13
diff changeset
1580 for i in range(4):
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 13
diff changeset
1581 self.assertNotEqual(ids[i], a[i])
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 13
diff changeset
1582 self.assertFalse(a[4].startswith('Orthanc'))
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 13
diff changeset
1583
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 13
diff changeset
1584 a = ExtractDicomTags(Anonymize(u, { 'SOPInstanceUID' : 'instance' }), tags)
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 13
diff changeset
1585 self.assertEqual('instance', a[3])
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 13
diff changeset
1586 self.assertFalse(a[4].startswith('Orthanc'))
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 13
diff changeset
1587
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 13
diff changeset
1588 a = ExtractDicomTags(Anonymize(u, { 'SeriesInstanceUID' : 'series' }), tags)
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 13
diff changeset
1589 self.assertEqual('series', a[2])
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 13
diff changeset
1590 self.assertFalse(a[4].startswith('Orthanc'))
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 13
diff changeset
1591
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 13
diff changeset
1592 a = ExtractDicomTags(Anonymize(u, { 'StudyInstanceUID' : 'study' }), tags)
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 13
diff changeset
1593 self.assertEqual('study', a[1])
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 13
diff changeset
1594 self.assertFalse(a[4].startswith('Orthanc'))
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 13
diff changeset
1595
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 13
diff changeset
1596 a = ExtractDicomTags(Anonymize(u, { 'PatientID' : 'patient' }), tags)
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 13
diff changeset
1597 self.assertEqual('patient', a[0])
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 13
diff changeset
1598 self.assertFalse(a[4].startswith('Orthanc'))
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 13
diff changeset
1599
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 13
diff changeset
1600 a = ExtractDicomTags(Anonymize(u, { 'PatientID' : 'patient',
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 13
diff changeset
1601 'StudyInstanceUID' : 'study',
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 13
diff changeset
1602 'SeriesInstanceUID' : 'series',
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 13
diff changeset
1603 'SOPInstanceUID' : 'instance' }), tags)
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 13
diff changeset
1604 self.assertEqual('patient', a[0])
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 13
diff changeset
1605 self.assertFalse(a[4].startswith('Orthanc'))
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 13
diff changeset
1606
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 13
diff changeset
1607 self.assertEqual(1, len(DoGet(_REMOTE, '/instances')))
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 13
diff changeset
1608
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 13
diff changeset
1609
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 13
diff changeset
1610 def test_shanon_2(self):
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 13
diff changeset
1611 def Modify(instance, replacements = {}):
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 13
diff changeset
1612 return DoPost(_REMOTE, '/instances/%s/modify' % instance, { 'Replace' : replacements }, 'application/json')
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 13
diff changeset
1613
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 13
diff changeset
1614 self.assertEqual(0, len(DoGet(_REMOTE, '/instances')))
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 13
diff changeset
1615 u = UploadInstance(_REMOTE, 'DummyCT.dcm')['ID']
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 13
diff changeset
1616 self.assertEqual(1, len(DoGet(_REMOTE, '/instances')))
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 13
diff changeset
1617
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 13
diff changeset
1618 tags = [ 'PatientID', 'StudyInstanceUID', 'SeriesInstanceUID', 'SOPInstanceUID', 'DeidentificationMethod' ]
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 13
diff changeset
1619 ids = [ 'ozp00SjY2xG',
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 13
diff changeset
1620 '1.2.840.113619.2.176.2025.1499492.7391.1171285944.390',
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 13
diff changeset
1621 '1.2.840.113619.2.176.2025.1499492.7391.1171285944.394',
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 13
diff changeset
1622 '1.2.840.113619.2.176.2025.1499492.7040.1171286242.109' ]
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 13
diff changeset
1623
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 13
diff changeset
1624 a = ExtractDicomTags(Modify(u), tags)
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 13
diff changeset
1625 self.assertEqual(ids[0], a[0])
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 13
diff changeset
1626 self.assertEqual(ids[1], a[1])
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 13
diff changeset
1627 self.assertEqual(ids[2], a[2])
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 13
diff changeset
1628 self.assertNotEqual(ids[3], a[3])
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 13
diff changeset
1629 self.assertEqual(0, len(a[4]))
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 13
diff changeset
1630
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 13
diff changeset
1631 a = ExtractDicomTags(Modify(u, { 'SOPInstanceUID' : 'instance' }), tags)
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 13
diff changeset
1632 self.assertEqual(ids[0], a[0])
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 13
diff changeset
1633 self.assertEqual(ids[1], a[1])
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 13
diff changeset
1634 self.assertEqual(ids[2], a[2])
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 13
diff changeset
1635 self.assertEqual('instance', a[3])
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 13
diff changeset
1636
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 13
diff changeset
1637 a = ExtractDicomTags(Modify(u, { 'SeriesInstanceUID' : 'series' }), tags)
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 13
diff changeset
1638 self.assertEqual(ids[0], a[0])
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 13
diff changeset
1639 self.assertEqual(ids[1], a[1])
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 13
diff changeset
1640 self.assertEqual('series', a[2])
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 13
diff changeset
1641 self.assertNotEqual(ids[3], a[3])
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 13
diff changeset
1642
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 13
diff changeset
1643 a = ExtractDicomTags(Modify(u, { 'StudyInstanceUID' : 'study' }), tags)
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 13
diff changeset
1644 self.assertEqual(ids[0], a[0])
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 13
diff changeset
1645 self.assertEqual('study', a[1])
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 13
diff changeset
1646 self.assertNotEqual(ids[2], a[2])
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 13
diff changeset
1647 self.assertNotEqual(ids[3], a[3])
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 13
diff changeset
1648
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 13
diff changeset
1649 a = ExtractDicomTags(Modify(u, { 'PatientID' : 'patient' }), tags)
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 13
diff changeset
1650 self.assertEqual('patient', a[0])
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 13
diff changeset
1651 self.assertNotEqual(ids[1], a[1])
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 13
diff changeset
1652 self.assertNotEqual(ids[2], a[2])
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 13
diff changeset
1653 self.assertNotEqual(ids[3], a[3])
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 13
diff changeset
1654
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 13
diff changeset
1655 a = ExtractDicomTags(Modify(u, { 'PatientID' : 'patient',
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 13
diff changeset
1656 'StudyInstanceUID' : 'study',
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 13
diff changeset
1657 'SeriesInstanceUID' : 'series',
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 13
diff changeset
1658 'SOPInstanceUID' : 'instance' }), tags)
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 13
diff changeset
1659 self.assertEqual('patient', a[0])
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 13
diff changeset
1660 self.assertEqual('study', a[1])
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 13
diff changeset
1661 self.assertEqual('series', a[2])
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 13
diff changeset
1662 self.assertEqual('instance', a[3])
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 13
diff changeset
1663
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 13
diff changeset
1664 self.assertEqual(1, len(DoGet(_REMOTE, '/instances')))
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 13
diff changeset
1665
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 13
diff changeset
1666
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 13
diff changeset
1667 def test_instances_tags(self):
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 13
diff changeset
1668 a = UploadInstance(_REMOTE, 'Knee/T1/IM-0001-0001.dcm')['ID']
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 13
diff changeset
1669 b = UploadInstance(_REMOTE, 'Knee/T2/IM-0001-0001.dcm')['ID']
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 13
diff changeset
1670 #a = UploadInstance(_REMOTE, 'Cardiac/MR.X.1.2.276.0.7230010.3.1.4.2831157719.2256.1336386937.676343')['ID']
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 13
diff changeset
1671 #b = UploadInstance(_REMOTE, 'Cardiac/MR.X.1.2.276.0.7230010.3.1.4.2831157719.2256.1336386925.676329')['ID']
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 13
diff changeset
1672
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 13
diff changeset
1673 i = DoGet(_REMOTE, '/patients/%s/instances-tags?simplify' % DoGet(_REMOTE, '/patients')[0])
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 13
diff changeset
1674 self.assertEqual(2, len(i))
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 13
diff changeset
1675 self.assertEqual('887', i[i.keys()[0]]['PatientID'])
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 13
diff changeset
1676 self.assertEqual('887', i[i.keys()[1]]['PatientID'])
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 13
diff changeset
1677
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 13
diff changeset
1678 i = DoGet(_REMOTE, '/patients/%s/instances-tags?simplify' % DoGet(_REMOTE, '/studies')[0])
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 13
diff changeset
1679 self.assertEqual(2, len(i))
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 13
diff changeset
1680 self.assertEqual('887', i[i.keys()[0]]['PatientID'])
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 13
diff changeset
1681 self.assertEqual('887', i[i.keys()[1]]['PatientID'])
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 13
diff changeset
1682
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 13
diff changeset
1683 self.assertEqual(2, len(DoGet(_REMOTE, '/series')))
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 13
diff changeset
1684 i = DoGet(_REMOTE, '/patients/%s/instances-tags?simplify' % DoGet(_REMOTE, '/series')[0])
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 13
diff changeset
1685 self.assertEqual(1, len(i))
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 13
diff changeset
1686 self.assertEqual('887', i[i.keys()[0]]['PatientID'])
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 13
diff changeset
1687
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 13
diff changeset
1688 i = DoGet(_REMOTE, '/patients/%s/instances-tags?simplify' % DoGet(_REMOTE, '/series')[1])
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 13
diff changeset
1689 self.assertEqual(1, len(i))
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 13
diff changeset
1690 self.assertEqual('887', i[i.keys()[0]]['PatientID'])
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 13
diff changeset
1691
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 13
diff changeset
1692
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 13
diff changeset
1693 def test_lookup(self):
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 13
diff changeset
1694 a = DoPost(_REMOTE, '/tools/lookup', 'ozp00SjY2xG')
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 13
diff changeset
1695 self.assertEqual(0, len(a))
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 13
diff changeset
1696
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 13
diff changeset
1697 UploadInstance(_REMOTE, 'DummyCT.dcm')
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 13
diff changeset
1698
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 13
diff changeset
1699 a = DoPost(_REMOTE, '/tools/lookup', 'ozp00SjY2xG')
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 13
diff changeset
1700 self.assertEqual(1, len(a))
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 13
diff changeset
1701 self.assertEqual('Patient', a[0]['Type'])
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 13
diff changeset
1702 self.assertEqual('6816cb19-844d5aee-85245eba-28e841e6-2414fae2', a[0]['ID'])
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 13
diff changeset
1703 self.assertEqual('/patients/%s' % a[0]['ID'], a[0]['Path'])
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 13
diff changeset
1704
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 13
diff changeset
1705 a = DoPost(_REMOTE, '/tools/lookup', '1.2.840.113619.2.176.2025.1499492.7391.1171285944.390')
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 13
diff changeset
1706 self.assertEqual(1, len(a))
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 13
diff changeset
1707 self.assertEqual('Study', a[0]['Type'])
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 13
diff changeset
1708 self.assertEqual('b9c08539-26f93bde-c81ab0d7-bffaf2cb-a4d0bdd0', a[0]['ID'])
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 13
diff changeset
1709 self.assertEqual('/studies/%s' % a[0]['ID'], a[0]['Path'])
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 13
diff changeset
1710
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 13
diff changeset
1711 a = DoPost(_REMOTE, '/tools/lookup', '1.2.840.113619.2.176.2025.1499492.7391.1171285944.394')
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 13
diff changeset
1712 self.assertEqual(1, len(a))
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 13
diff changeset
1713 self.assertEqual('Series', a[0]['Type'])
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 13
diff changeset
1714 self.assertEqual('f2635388-f01d497a-15f7c06b-ad7dba06-c4c599fe', a[0]['ID'])
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 13
diff changeset
1715 self.assertEqual('/series/%s' % a[0]['ID'], a[0]['Path'])
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 13
diff changeset
1716
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 13
diff changeset
1717 a = DoPost(_REMOTE, '/tools/lookup', '1.2.840.113619.2.176.2025.1499492.7040.1171286242.109')
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 13
diff changeset
1718 self.assertEqual(1, len(a))
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 13
diff changeset
1719 self.assertEqual('Instance', a[0]['Type'])
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 13
diff changeset
1720 self.assertEqual('66a662ce-7430e543-bad44d47-0dc5a943-ec7a538d', a[0]['ID'])
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 13
diff changeset
1721 self.assertEqual('/instances/%s' % a[0]['ID'], a[0]['Path'])
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 13
diff changeset
1722
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 13
diff changeset
1723 DropOrthanc(_REMOTE)
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 13
diff changeset
1724 a = DoPost(_REMOTE, '/tools/lookup', '3113719P')
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 13
diff changeset
1725 self.assertEqual(0, len(a))
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 13
diff changeset
1726
15
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 14
diff changeset
1727
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 14
diff changeset
1728 def test_autorouting(self):
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 14
diff changeset
1729 knee1 = 'Knee/T1/IM-0001-0001.dcm'
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 14
diff changeset
1730 knee2 = 'Knee/T2/IM-0001-0002.dcm'
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 14
diff changeset
1731 other = 'Brainix/Flair/IM-0001-0001.dcm'
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 14
diff changeset
1732
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 14
diff changeset
1733 # Check that this version is >= 0.8.0
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 14
diff changeset
1734 self.assertTrue(IsDefinedInLua(_REMOTE, '_InitializeJob'))
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 14
diff changeset
1735 self.assertTrue('orthanctest' in DoGet(_REMOTE, '/modalities'))
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 14
diff changeset
1736
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 14
diff changeset
1737 UploadInstance(_REMOTE, knee1)
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 14
diff changeset
1738 self.assertEqual(0, len(DoGet(_LOCAL, '/instances')))
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 14
diff changeset
1739
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 14
diff changeset
1740 DropOrthanc(_REMOTE)
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 14
diff changeset
1741 DropOrthanc(_LOCAL)
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 14
diff changeset
1742 InstallLuaScript('Lua/Autorouting.lua')
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 14
diff changeset
1743 UploadInstance(_REMOTE, knee1)
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 14
diff changeset
1744 UploadInstance(_REMOTE, knee2)
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 14
diff changeset
1745 UploadInstance(_REMOTE, other)
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 14
diff changeset
1746 WaitEmpty(_REMOTE)
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 14
diff changeset
1747 UninstallLuaCallbacks()
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 14
diff changeset
1748 self.assertEqual(3, len(DoGet(_LOCAL, '/instances')))
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 14
diff changeset
1749
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 14
diff changeset
1750 DropOrthanc(_REMOTE)
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 14
diff changeset
1751 DropOrthanc(_LOCAL)
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 14
diff changeset
1752 InstallLuaScript('Lua/AutoroutingConditional.lua')
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 14
diff changeset
1753 UploadInstance(_REMOTE, knee1)
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 14
diff changeset
1754 UploadInstance(_REMOTE, knee2)
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 14
diff changeset
1755 UploadInstance(_REMOTE, other)
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 14
diff changeset
1756 WaitEmpty(_REMOTE)
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 14
diff changeset
1757 UninstallLuaCallbacks()
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 14
diff changeset
1758 self.assertEqual(2, len(DoGet(_LOCAL, '/instances')))
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 14
diff changeset
1759
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 14
diff changeset
1760 DropOrthanc(_REMOTE)
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 14
diff changeset
1761 DropOrthanc(_LOCAL)
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 14
diff changeset
1762 InstallLuaScript('Lua/AutoroutingModification.lua')
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 14
diff changeset
1763 UploadInstance(_REMOTE, knee1)
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 14
diff changeset
1764 WaitEmpty(_REMOTE)
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 14
diff changeset
1765 UninstallLuaCallbacks()
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 14
diff changeset
1766 i = DoGet(_LOCAL, '/instances')
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 14
diff changeset
1767 self.assertEqual(1, len(i))
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 14
diff changeset
1768
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 14
diff changeset
1769 with tempfile.NamedTemporaryFile(delete = True) as f:
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 14
diff changeset
1770 f.write(DoGet(_LOCAL, '/instances/%s/file' % i[0]))
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 14
diff changeset
1771 f.flush()
45
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 44
diff changeset
1772 routed = subprocess.check_output([ FindExecutable('dcm2xml'), f.name ])
15
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 14
diff changeset
1773 self.assertEqual('My Medical Device', re.search('"StationName">(.*?)<', routed).group(1).strip())
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 14
diff changeset
1774 self.assertEqual(None, re.search('"MilitaryRank"', routed))
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 14
diff changeset
1775 self.assertEqual(None, re.search('"0051,0010"', routed)) # A private tag
17
7c8500991a12 karsten
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 15
diff changeset
1776
7c8500991a12 karsten
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 15
diff changeset
1777
7c8500991a12 karsten
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 15
diff changeset
1778 def test_storescu_rf(self):
7c8500991a12 karsten
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 15
diff changeset
1779 i = UploadInstance(_REMOTE, 'KarstenHilbertRF.dcm')['ID']
7c8500991a12 karsten
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 15
diff changeset
1780 self.assertEqual(0, len(DoGet(_LOCAL, '/instances')))
7c8500991a12 karsten
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 15
diff changeset
1781 j = DoPost(_REMOTE, '/modalities/orthanctest/store', str(i), 'text/plain')
7c8500991a12 karsten
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 15
diff changeset
1782 self.assertEqual(1, len(DoGet(_LOCAL, '/instances')))
18
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 17
diff changeset
1783
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 17
diff changeset
1784
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 17
diff changeset
1785 def test_anonymize_instance(self):
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 17
diff changeset
1786 def AnonymizeAndUpload(instanceId, parameters):
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 17
diff changeset
1787 return DoPost(_REMOTE, '/instances', DoPost(_REMOTE, '/instances/%s/anonymize' % instanceId, parameters,
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 17
diff changeset
1788 'application/json'), 'application/dicom')['ID']
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 17
diff changeset
1789
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 17
diff changeset
1790 def ModifyAndUpload(instanceId, parameters):
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 17
diff changeset
1791 return DoPost(_REMOTE, '/instances', DoPost(_REMOTE, '/instances/%s/modify' % instanceId, parameters,
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 17
diff changeset
1792 'application/json'), 'application/dicom')['ID']
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 17
diff changeset
1793
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 17
diff changeset
1794 a = UploadInstance(_REMOTE, 'PrivateMDNTags.dcm')['ID']
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 17
diff changeset
1795 s1 = DoGet(_REMOTE, '/instances/%s/content/PatientName' % a)
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 17
diff changeset
1796 s2 = DoGet(_REMOTE, '/instances/%s/content/00e1-10c2' % a) # Some private tag
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 17
diff changeset
1797 s3 = DoGet(_REMOTE, '/instances/%s/content/StudyDescription' % a)
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 17
diff changeset
1798 s4 = DoGet(_REMOTE, '/instances/%s/content/SeriesDescription' % a)
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 17
diff changeset
1799 s5 = DoGet(_REMOTE, '/instances/%s/content/InstitutionName' % a)
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 17
diff changeset
1800
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 17
diff changeset
1801 b = AnonymizeAndUpload(a, '{}')
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 17
diff changeset
1802 self.assertNotEqual(s1, DoGet(_REMOTE, '/instances/%s/content/PatientName' % b))
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 17
diff changeset
1803 self.assertRaises(Exception, lambda: DoGet(_REMOTE, '/instances/%s/content/00e1-10c2' % b))
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 17
diff changeset
1804
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 17
diff changeset
1805 # Keep private tag (only OK since Orthanc 0.8.0)
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 17
diff changeset
1806 b = AnonymizeAndUpload(a, '{"Keep":["00e1-10c2"]}')
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 17
diff changeset
1807 self.assertNotEqual(s1, DoGet(_REMOTE, '/instances/%s/content/PatientName' % b))
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 17
diff changeset
1808 self.assertEqual(s2, DoGet(_REMOTE, '/instances/%s/content/00e1-10c2' % b))
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 17
diff changeset
1809
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 17
diff changeset
1810 b = AnonymizeAndUpload(a, '{"Keep":["00e1,10c2","PatientName"]}')
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 17
diff changeset
1811 self.assertEqual(s1, DoGet(_REMOTE, '/instances/%s/content/PatientName' % b))
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 17
diff changeset
1812 self.assertEqual(s2, DoGet(_REMOTE, '/instances/%s/content/00e1-10c2' % b))
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 17
diff changeset
1813
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 17
diff changeset
1814 b = AnonymizeAndUpload(a, '{"Keep":["PatientName"],"Replace":{"00e1,10c2":"Hello"}}')
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 17
diff changeset
1815 self.assertEqual(s1, DoGet(_REMOTE, '/instances/%s/content/PatientName' % b))
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 17
diff changeset
1816 self.assertTrue(DoGet(_REMOTE, '/instances/%s/content/00e1-10c2' % b).startswith('Hello'))
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 17
diff changeset
1817
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 17
diff changeset
1818 # Examples from the Wiki
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 17
diff changeset
1819 b = AnonymizeAndUpload(a, '{"Replace":{"PatientName":"hello","0010-0020":"world"},"Keep":["StudyDescription", "SeriesDescription"],"KeepPrivateTags": null}')
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 17
diff changeset
1820 self.assertEqual('hello', DoGet(_REMOTE, '/instances/%s/content/0010-0010' % b).strip())
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 17
diff changeset
1821 self.assertEqual('world', DoGet(_REMOTE, '/instances/%s/content/PatientID' % b).strip())
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 17
diff changeset
1822 self.assertEqual(s3, DoGet(_REMOTE, '/instances/%s/content/0008,1030' % b))
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 17
diff changeset
1823 self.assertEqual(s4, DoGet(_REMOTE, '/instances/%s/content/0008,103e' % b))
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 17
diff changeset
1824 self.assertEqual(s4, DoGet(_REMOTE, '/instances/%s/content/0008-103E' % b))
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 17
diff changeset
1825 self.assertEqual(s2, DoGet(_REMOTE, '/instances/%s/content/00e1-10c2' % b))
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 17
diff changeset
1826 DoGet(_REMOTE, '/instances/%s/content/InstitutionName' % a)
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 17
diff changeset
1827 self.assertRaises(Exception, lambda: DoGet(_REMOTE, '/instances/%s/content/InstitutionName' % b))
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 17
diff changeset
1828
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 17
diff changeset
1829 b = ModifyAndUpload(a, '{"Replace":{"PatientName":"hello","PatientID":"world"},"Remove":["InstitutionName"],"RemovePrivateTags": null}')
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 17
diff changeset
1830 self.assertEqual('hello', DoGet(_REMOTE, '/instances/%s/content/0010-0010' % b).strip())
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 17
diff changeset
1831 self.assertEqual('world', DoGet(_REMOTE, '/instances/%s/content/PatientID' % b).strip())
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 17
diff changeset
1832 self.assertEqual(s3, DoGet(_REMOTE, '/instances/%s/content/0008,1030' % b))
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 17
diff changeset
1833 self.assertEqual(s4, DoGet(_REMOTE, '/instances/%s/content/0008,103e' % b))
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 17
diff changeset
1834 self.assertRaises(Exception, lambda: DoGet(_REMOTE, '/instances/%s/content/00e1-10c2' % b))
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 17
diff changeset
1835 self.assertRaises(Exception, lambda: DoGet(_REMOTE, '/instances/%s/content/InstitutionName' % b))
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 17
diff changeset
1836
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 17
diff changeset
1837 b = ModifyAndUpload(a, '{"Replace":{"PatientName":"hello","PatientID":"world"}}')
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 17
diff changeset
1838 self.assertEqual('hello', DoGet(_REMOTE, '/instances/%s/content/0010-0010' % b).strip())
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 17
diff changeset
1839 self.assertEqual('world', DoGet(_REMOTE, '/instances/%s/content/PatientID' % b).strip())
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 17
diff changeset
1840 self.assertEqual(s2, DoGet(_REMOTE, '/instances/%s/content/00e1,10c2' % b))
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 17
diff changeset
1841 self.assertEqual(s3, DoGet(_REMOTE, '/instances/%s/content/0008,1030' % b))
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 17
diff changeset
1842 self.assertEqual(s4, DoGet(_REMOTE, '/instances/%s/content/0008-103E' % b))
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 17
diff changeset
1843 self.assertEqual(s5, DoGet(_REMOTE, '/instances/%s/content/InstitutionName' % b))
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 17
diff changeset
1844
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 17
diff changeset
1845
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 17
diff changeset
1846 # Test modify non-existing
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 17
diff changeset
1847 i = DoPost(_REMOTE, '/tools/create-dicom',
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 17
diff changeset
1848 json.dumps({
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 17
diff changeset
1849 'PatientName' : 'Jodogne',
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 17
diff changeset
1850 'Modality' : 'CT',
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 17
diff changeset
1851 }))['ID']
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 17
diff changeset
1852
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 17
diff changeset
1853 self.assertEqual('Jodogne', DoGet(_REMOTE, '/instances/%s/content/PatientName' % i).strip())
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 17
diff changeset
1854 self.assertRaises(Exception, lambda: DoGet(_REMOTE, '/instances/%s/content/StudyDescription' % i))
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 17
diff changeset
1855 self.assertEqual('CT', DoGet(_REMOTE, '/instances/%s/content/Modality' % i).strip())
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 17
diff changeset
1856
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 17
diff changeset
1857 b = ModifyAndUpload(i, '{"Replace":{"StudyDescription":"hello","Modality":"world"}}')
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 17
diff changeset
1858 self.assertEqual('Jodogne', DoGet(_REMOTE, '/instances/%s/content/PatientName' % b).strip())
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 17
diff changeset
1859 self.assertEqual('hello', DoGet(_REMOTE, '/instances/%s/content/StudyDescription' % b).strip())
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 17
diff changeset
1860 self.assertEqual('world', DoGet(_REMOTE, '/instances/%s/content/Modality' % b).strip())
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 17
diff changeset
1861
21
2a29bcff60a7 tests of image decoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 18
diff changeset
1862
2a29bcff60a7 tests of image decoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 18
diff changeset
1863 def test_incoming_jpeg(self):
2a29bcff60a7 tests of image decoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 18
diff changeset
1864 def storescu():
2a29bcff60a7 tests of image decoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 18
diff changeset
1865 with open(os.devnull, 'w') as FNULL:
45
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 44
diff changeset
1866 subprocess.check_call([ FindExecutable('storescu'), '-xs',
21
2a29bcff60a7 tests of image decoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 18
diff changeset
1867 _REMOTE['Server'], str(_REMOTE['DicomPort']),
2a29bcff60a7 tests of image decoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 18
diff changeset
1868 GetDatabasePath('Knix/Loc/IM-0001-0001.dcm') ],
2a29bcff60a7 tests of image decoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 18
diff changeset
1869 stderr = FNULL)
2a29bcff60a7 tests of image decoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 18
diff changeset
1870
2a29bcff60a7 tests of image decoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 18
diff changeset
1871 self.assertEqual(0, len(DoGet(_REMOTE, '/patients')))
2a29bcff60a7 tests of image decoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 18
diff changeset
1872 InstallLuaScript('Lua/TransferSyntaxDisable.lua')
2a29bcff60a7 tests of image decoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 18
diff changeset
1873 self.assertRaises(Exception, storescu)
2a29bcff60a7 tests of image decoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 18
diff changeset
1874 self.assertEqual(0, len(DoGet(_REMOTE, '/patients')))
2a29bcff60a7 tests of image decoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 18
diff changeset
1875 InstallLuaScript('Lua/TransferSyntaxEnable.lua')
43
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 40
diff changeset
1876 DoPost(_REMOTE, '/tools/execute-script', "print('All special transfer syntaxes are now accepted')")
21
2a29bcff60a7 tests of image decoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 18
diff changeset
1877 storescu()
2a29bcff60a7 tests of image decoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 18
diff changeset
1878 self.assertEqual(1, len(DoGet(_REMOTE, '/patients')))
2a29bcff60a7 tests of image decoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 18
diff changeset
1879
2a29bcff60a7 tests of image decoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 18
diff changeset
1880
2a29bcff60a7 tests of image decoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 18
diff changeset
1881 def test_storescu_jpeg(self):
2a29bcff60a7 tests of image decoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 18
diff changeset
1882 self.assertEqual(0, len(DoGet(_REMOTE, '/exports')['Exports']))
2a29bcff60a7 tests of image decoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 18
diff changeset
1883
2a29bcff60a7 tests of image decoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 18
diff changeset
1884 knixStudy = 'b9c08539-26f93bde-c81ab0d7-bffaf2cb-a4d0bdd0'
2a29bcff60a7 tests of image decoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 18
diff changeset
1885 UploadInstance(_REMOTE, 'Knix/Loc/IM-0001-0001.dcm')
2a29bcff60a7 tests of image decoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 18
diff changeset
1886 UploadInstance(_REMOTE, 'Knix/Loc/IM-0001-0002.dcm')
2a29bcff60a7 tests of image decoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 18
diff changeset
1887 UploadInstance(_REMOTE, 'Knix/Loc/IM-0001-0003.dcm')
2a29bcff60a7 tests of image decoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 18
diff changeset
1888
2a29bcff60a7 tests of image decoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 18
diff changeset
1889 a = UploadInstance(_REMOTE, 'Brainix/Flair/IM-0001-0001.dcm')['ID']
2a29bcff60a7 tests of image decoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 18
diff changeset
1890 b = UploadInstance(_REMOTE, 'ColorTestImageJ.dcm')['ID']
2a29bcff60a7 tests of image decoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 18
diff changeset
1891 self.assertEqual(0, len(DoGet(_LOCAL, '/instances')))
2a29bcff60a7 tests of image decoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 18
diff changeset
1892 DoPost(_REMOTE, '/modalities/orthanctest/store', [ knixStudy, a, b ])
2a29bcff60a7 tests of image decoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 18
diff changeset
1893 self.assertEqual(5, len(DoGet(_LOCAL, '/instances')))
2a29bcff60a7 tests of image decoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 18
diff changeset
1894
2a29bcff60a7 tests of image decoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 18
diff changeset
1895 self.assertEqual(3, len(DoGet(_REMOTE, '/exports')['Exports']))
2a29bcff60a7 tests of image decoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 18
diff changeset
1896
2a29bcff60a7 tests of image decoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 18
diff changeset
1897 DropOrthanc(_REMOTE)
2a29bcff60a7 tests of image decoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 18
diff changeset
1898 self.assertEqual(0, len(DoGet(_REMOTE, '/exports')['Exports']))
2a29bcff60a7 tests of image decoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 18
diff changeset
1899
2a29bcff60a7 tests of image decoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 18
diff changeset
1900
2a29bcff60a7 tests of image decoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 18
diff changeset
1901 def test_pixel_data(self):
2a29bcff60a7 tests of image decoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 18
diff changeset
1902 jpeg = UploadInstance(_REMOTE, 'Knix/Loc/IM-0001-0001.dcm')['ID']
2a29bcff60a7 tests of image decoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 18
diff changeset
1903 color = UploadInstance(_REMOTE, 'ColorTestImageJ.dcm')['ID']
2a29bcff60a7 tests of image decoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 18
diff changeset
1904 phenix = UploadInstance(_REMOTE, 'Phenix/IM-0001-0001.dcm')['ID']
2a29bcff60a7 tests of image decoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 18
diff changeset
1905
2a29bcff60a7 tests of image decoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 18
diff changeset
1906 phenixSize = 358 * 512 * 2
2a29bcff60a7 tests of image decoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 18
diff changeset
1907 colorSize = 1000 * 1000 * 3
2a29bcff60a7 tests of image decoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 18
diff changeset
1908 jpegSize = 51918
2a29bcff60a7 tests of image decoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 18
diff changeset
1909
2a29bcff60a7 tests of image decoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 18
diff changeset
1910 self.assertEqual(1, len(DoGet(_REMOTE, '/instances/%s/content/7fe0-0010' % phenix)))
2a29bcff60a7 tests of image decoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 18
diff changeset
1911 self.assertEqual(1, len(DoGet(_REMOTE, '/instances/%s/content/7fe0-0010' % color)))
2a29bcff60a7 tests of image decoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 18
diff changeset
1912 self.assertEqual(2, len(DoGet(_REMOTE, '/instances/%s/content/7fe0-0010' % jpeg)))
2a29bcff60a7 tests of image decoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 18
diff changeset
1913
2a29bcff60a7 tests of image decoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 18
diff changeset
1914 self.assertEqual(0, len(DoGet(_REMOTE, '/instances/%s/content/7fe0-0010/0' % jpeg)))
2a29bcff60a7 tests of image decoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 18
diff changeset
1915 self.assertEqual(jpegSize, len(DoGet(_REMOTE, '/instances/%s/content/7fe0-0010/1' % jpeg)))
2a29bcff60a7 tests of image decoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 18
diff changeset
1916
2a29bcff60a7 tests of image decoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 18
diff changeset
1917 self.assertEqual(phenixSize, len(DoGet(_REMOTE, '/instances/%s/content/7fe0-0010/0' % phenix)))
2a29bcff60a7 tests of image decoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 18
diff changeset
1918 self.assertEqual(colorSize, len(DoGet(_REMOTE, '/instances/%s/content/7fe0-0010/0' % color)))
2a29bcff60a7 tests of image decoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 18
diff changeset
1919
2a29bcff60a7 tests of image decoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 18
diff changeset
1920
2a29bcff60a7 tests of image decoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 18
diff changeset
1921 def test_decode_brainix(self):
2a29bcff60a7 tests of image decoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 18
diff changeset
1922 brainix = [
2a29bcff60a7 tests of image decoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 18
diff changeset
1923 UploadInstance(_REMOTE, 'Brainix/Epi/IM-0001-0001.dcm')['ID'], # (*)
2a29bcff60a7 tests of image decoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 18
diff changeset
1924 UploadInstance(_REMOTE, 'Formats/JpegLossless.dcm')['ID'], # JPEG-LS, same as (*) (since Orthanc 0.7.6)
2a29bcff60a7 tests of image decoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 18
diff changeset
1925 UploadInstance(_REMOTE, 'Formats/Jpeg.dcm')['ID'], # JPEG, same as (*) (since Orthanc 0.7.6)
2a29bcff60a7 tests of image decoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 18
diff changeset
1926 ]
2a29bcff60a7 tests of image decoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 18
diff changeset
1927 h = '6fb11b932d535c2be04beabd99793ff8'
2a29bcff60a7 tests of image decoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 18
diff changeset
1928 maxValue = 426.0
2a29bcff60a7 tests of image decoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 18
diff changeset
1929
2a29bcff60a7 tests of image decoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 18
diff changeset
1930 truth = Image.open(GetDatabasePath('Formats/Brainix.png'))
2a29bcff60a7 tests of image decoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 18
diff changeset
1931 for i in brainix:
2a29bcff60a7 tests of image decoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 18
diff changeset
1932 self.AssertSameImages(truth.getdata(), '/instances/%s/image-int16' % i)
2a29bcff60a7 tests of image decoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 18
diff changeset
1933 self.AssertSameImages(truth.getdata(), '/instances/%s/image-uint16' % i)
2a29bcff60a7 tests of image decoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 18
diff changeset
1934
2a29bcff60a7 tests of image decoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 18
diff changeset
1935 truth2 = map(lambda x: min(255, x), truth.getdata())
2a29bcff60a7 tests of image decoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 18
diff changeset
1936 for i in brainix:
2a29bcff60a7 tests of image decoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 18
diff changeset
1937 self.AssertSameImages(truth2, '/instances/%s/image-uint8' % i)
2a29bcff60a7 tests of image decoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 18
diff changeset
1938
2a29bcff60a7 tests of image decoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 18
diff changeset
1939 truth2 = map(lambda x: x * 255.0 / maxValue, truth.getdata())
2a29bcff60a7 tests of image decoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 18
diff changeset
1940 for i in brainix:
2a29bcff60a7 tests of image decoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 18
diff changeset
1941 self.AssertSameImages(truth2, '/instances/%s/preview' % i)
2a29bcff60a7 tests of image decoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 18
diff changeset
1942
2a29bcff60a7 tests of image decoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 18
diff changeset
1943 for i in brainix:
2a29bcff60a7 tests of image decoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 18
diff changeset
1944 self.assertEqual(h, ComputeMD5(DoGet(_REMOTE, '/instances/%s/matlab' % i)))
2a29bcff60a7 tests of image decoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 18
diff changeset
1945
2a29bcff60a7 tests of image decoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 18
diff changeset
1946
2a29bcff60a7 tests of image decoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 18
diff changeset
1947 def test_decode_color(self):
2a29bcff60a7 tests of image decoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 18
diff changeset
1948 imagej = UploadInstance(_REMOTE, 'ColorTestImageJ.dcm')['ID']
2a29bcff60a7 tests of image decoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 18
diff changeset
1949 color = UploadInstance(_REMOTE, 'ColorTestMalaterre.dcm')['ID']
2a29bcff60a7 tests of image decoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 18
diff changeset
1950
2a29bcff60a7 tests of image decoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 18
diff changeset
1951 for i in [ imagej, color ]:
2a29bcff60a7 tests of image decoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 18
diff changeset
1952 for j in [ 'image-uint8', 'image-uint16', 'image-int16' ]:
2a29bcff60a7 tests of image decoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 18
diff changeset
1953 self.assertRaises(Exception, lambda: DoGet(_REMOTE, '/instances/%s/%s' % (i, j)))
2a29bcff60a7 tests of image decoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 18
diff changeset
1954
2a29bcff60a7 tests of image decoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 18
diff changeset
1955 self.assertEqual('c14c687f7a1ea9fe022479fc87c67274', ComputeMD5(DoGet(_REMOTE, '/instances/%s/preview' % imagej)))
2a29bcff60a7 tests of image decoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 18
diff changeset
1956 self.assertEqual('a87d122918a56f803bcfe9d2586b9125', ComputeMD5(DoGet(_REMOTE, '/instances/%s/preview' % color)))
2a29bcff60a7 tests of image decoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 18
diff changeset
1957
2a29bcff60a7 tests of image decoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 18
diff changeset
1958 self.assertEqual('30cc46bfa7aba77a40e4178f6184c25a', ComputeMD5(DoGet(_REMOTE, '/instances/%s/matlab' % imagej)))
2a29bcff60a7 tests of image decoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 18
diff changeset
1959 self.assertEqual('ff195005cef06b59666fd220a9b4cd9a', ComputeMD5(DoGet(_REMOTE, '/instances/%s/matlab' % color)))
2a29bcff60a7 tests of image decoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 18
diff changeset
1960
2a29bcff60a7 tests of image decoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 18
diff changeset
1961
2a29bcff60a7 tests of image decoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 18
diff changeset
1962 def test_decode_rf(self):
2a29bcff60a7 tests of image decoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 18
diff changeset
1963 rf = UploadInstance(_REMOTE, 'KarstenHilbertRF.dcm')['ID']
2a29bcff60a7 tests of image decoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 18
diff changeset
1964 truth = Image.open(GetDatabasePath('Formats/KarstenHilbertRF.png'))
2a29bcff60a7 tests of image decoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 18
diff changeset
1965
2a29bcff60a7 tests of image decoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 18
diff changeset
1966 self.AssertSameImages(truth.getdata(), '/instances/%s/image-uint8' % rf)
2a29bcff60a7 tests of image decoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 18
diff changeset
1967 self.AssertSameImages(truth.getdata(), '/instances/%s/image-uint16' % rf)
2a29bcff60a7 tests of image decoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 18
diff changeset
1968 self.AssertSameImages(truth.getdata(), '/instances/%s/image-int16' % rf)
2a29bcff60a7 tests of image decoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 18
diff changeset
1969 self.AssertSameImages(truth.getdata(), '/instances/%s/preview' % rf)
2a29bcff60a7 tests of image decoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 18
diff changeset
1970
2a29bcff60a7 tests of image decoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 18
diff changeset
1971 self.assertEqual('42254d70efd2f4a1b8f3455909689f0e', ComputeMD5(DoGet(_REMOTE, '/instances/%s/matlab' % rf)))
2a29bcff60a7 tests of image decoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 18
diff changeset
1972
2a29bcff60a7 tests of image decoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 18
diff changeset
1973
2a29bcff60a7 tests of image decoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 18
diff changeset
1974 def test_decode_multiframe(self):
2a29bcff60a7 tests of image decoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 18
diff changeset
1975 mf = UploadInstance(_REMOTE, 'Multiframe.dcm')['ID']
2a29bcff60a7 tests of image decoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 18
diff changeset
1976
2a29bcff60a7 tests of image decoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 18
diff changeset
1977 # Test the first frame
2a29bcff60a7 tests of image decoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 18
diff changeset
1978 truth = Image.open(GetDatabasePath('Formats/Multiframe0.png'))
2a29bcff60a7 tests of image decoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 18
diff changeset
1979 self.AssertSameImages(truth.getdata(), '/instances/%s/image-uint8' % mf)
2a29bcff60a7 tests of image decoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 18
diff changeset
1980 self.AssertSameImages(truth.getdata(), '/instances/%s/image-uint16' % mf)
2a29bcff60a7 tests of image decoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 18
diff changeset
1981 self.AssertSameImages(truth.getdata(), '/instances/%s/image-int16' % mf)
2a29bcff60a7 tests of image decoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 18
diff changeset
1982 self.AssertSameImages(truth.getdata(), '/instances/%s/preview' % mf)
2a29bcff60a7 tests of image decoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 18
diff changeset
1983 self.assertEqual('9812b99d93bbcd4e7684ded089b5dfb3', ComputeMD5(DoGet(_REMOTE, '/instances/%s/matlab' % mf)))
2a29bcff60a7 tests of image decoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 18
diff changeset
1984
2a29bcff60a7 tests of image decoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 18
diff changeset
1985 self.AssertSameImages(truth.getdata(), '/instances/%s/frames/0/image-uint16' % mf)
2a29bcff60a7 tests of image decoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 18
diff changeset
1986
2a29bcff60a7 tests of image decoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 18
diff changeset
1987 # Test the last frame
2a29bcff60a7 tests of image decoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 18
diff changeset
1988 truth = Image.open(GetDatabasePath('Formats/Multiframe75.png'))
2a29bcff60a7 tests of image decoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 18
diff changeset
1989 self.AssertSameImages(truth.getdata(), '/instances/%s/frames/75/image-uint16' % mf)
2a29bcff60a7 tests of image decoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 18
diff changeset
1990
2a29bcff60a7 tests of image decoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 18
diff changeset
1991
2a29bcff60a7 tests of image decoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 18
diff changeset
1992 def test_decode_signed(self):
2a29bcff60a7 tests of image decoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 18
diff changeset
1993 signed = UploadInstance(_REMOTE, 'SignedCT.dcm')['ID']
2a29bcff60a7 tests of image decoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 18
diff changeset
1994 minValue = -2000
2a29bcff60a7 tests of image decoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 18
diff changeset
1995 maxValue = 4042
2a29bcff60a7 tests of image decoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 18
diff changeset
1996
2a29bcff60a7 tests of image decoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 18
diff changeset
1997 truth = Image.open(GetDatabasePath('Formats/SignedCT.png'))
2a29bcff60a7 tests of image decoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 18
diff changeset
1998 self.AssertSameImages(truth.getdata(), '/instances/%s/image-int16' % signed)
2a29bcff60a7 tests of image decoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 18
diff changeset
1999
2a29bcff60a7 tests of image decoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 18
diff changeset
2000 truth2 = map(lambda x: 0 if x >= 32768 else x, truth.getdata())
2a29bcff60a7 tests of image decoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 18
diff changeset
2001 self.AssertSameImages(truth2, '/instances/%s/image-uint16' % signed)
2a29bcff60a7 tests of image decoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 18
diff changeset
2002
2a29bcff60a7 tests of image decoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 18
diff changeset
2003 truth3 = map(lambda x: 255 if x >= 256 else x, truth2)
2a29bcff60a7 tests of image decoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 18
diff changeset
2004 self.AssertSameImages(truth3, '/instances/%s/image-uint8' % signed)
2a29bcff60a7 tests of image decoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 18
diff changeset
2005
2a29bcff60a7 tests of image decoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 18
diff changeset
2006 tmp = map(lambda x: x - 65536 if x >= 32768 else x, truth.getdata())
2a29bcff60a7 tests of image decoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 18
diff changeset
2007 tmp = map(lambda x: (255.0 * (x - minValue)) / (maxValue - minValue), tmp)
2a29bcff60a7 tests of image decoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 18
diff changeset
2008 self.AssertSameImages(tmp, '/instances/%s/preview' % signed)
2a29bcff60a7 tests of image decoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 18
diff changeset
2009
2a29bcff60a7 tests of image decoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 18
diff changeset
2010 self.assertEqual('b57e6c872a3da50877c7da689b03a444', ComputeMD5(DoGet(_REMOTE, '/instances/%s/matlab' % signed)))
22
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 21
diff changeset
2011
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 21
diff changeset
2012
46
85b2e36ed392 explicit GoogleCode source
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 45
diff changeset
2013 def test_googlecode_issue_32(self):
22
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 21
diff changeset
2014 f = UploadInstance(_REMOTE, 'Issue32.dcm')['ID']
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 21
diff changeset
2015 tags = DoGet(_REMOTE, '/instances/%s/tags?simplify' % f)
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 21
diff changeset
2016 self.assertEqual(u'Рентгенография', tags['SeriesDescription'])
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 21
diff changeset
2017 self.assertEqual(u'Таз', tags['BodyPartExamined'])
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 21
diff changeset
2018 self.assertEqual(u'Прямая', tags['ViewPosition'])
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 21
diff changeset
2019
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 21
diff changeset
2020
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 21
diff changeset
2021 def test_encodings(self):
23
30ecc857fa07 test latin-2
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 22
diff changeset
2022 # Latin-1 (ISO_IR 100)
22
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 21
diff changeset
2023 brainix = UploadInstance(_REMOTE, 'Brainix/Epi/IM-0001-0001.dcm')['ID']
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 21
diff changeset
2024 tags = DoGet(_REMOTE, '/instances/%s/tags?simplify' % brainix)
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 21
diff changeset
2025 self.assertEqual(u'IRM cérébrale, neuro-crâne', tags['StudyDescription'])
23
30ecc857fa07 test latin-2
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 22
diff changeset
2026
30ecc857fa07 test latin-2
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 22
diff changeset
2027 # Latin-2 (ISO_IR 101)
30ecc857fa07 test latin-2
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 22
diff changeset
2028 a = UploadInstance(_REMOTE, 'MarekLatin2.dcm')['ID']
30ecc857fa07 test latin-2
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 22
diff changeset
2029 i = DoGet(_REMOTE, '/instances/%s/simplified-tags' % a)
30ecc857fa07 test latin-2
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 22
diff changeset
2030 # dcm2xml MarekLatin2.dcm | iconv -f latin2 -t utf-8 | xmllint --format -
30ecc857fa07 test latin-2
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 22
diff changeset
2031 self.assertEqual('Imię i Nazwisko osoby opisującej',
30ecc857fa07 test latin-2
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 22
diff changeset
2032 i['ContentSequence'][4]['ConceptNameCodeSequence'][0]['CodeMeaning'].encode('utf-8'))
30ecc857fa07 test latin-2
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 22
diff changeset
2033
26
040f6ef1394a test_storescu_custom_aet
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 23
diff changeset
2034
040f6ef1394a test_storescu_custom_aet
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 23
diff changeset
2035 def test_storescu_custom_aet(self):
040f6ef1394a test_storescu_custom_aet
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 23
diff changeset
2036 # This tests a feature introduced in Orthanc 0.9.1: "Custom
040f6ef1394a test_storescu_custom_aet
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 23
diff changeset
2037 # setting of the local AET during C-Store SCU (both in Lua and
040f6ef1394a test_storescu_custom_aet
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 23
diff changeset
2038 # in the REST API)."
040f6ef1394a test_storescu_custom_aet
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 23
diff changeset
2039 # https://groups.google.com/forum/#!msg/orthanc-users/o5qMULformU/wZjW2iSaMcAJ
040f6ef1394a test_storescu_custom_aet
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 23
diff changeset
2040
040f6ef1394a test_storescu_custom_aet
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 23
diff changeset
2041 self.assertEqual(0, len(DoGet(_LOCAL, '/patients')))
040f6ef1394a test_storescu_custom_aet
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 23
diff changeset
2042
040f6ef1394a test_storescu_custom_aet
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 23
diff changeset
2043 a = UploadInstance(_REMOTE, 'Knee/T1/IM-0001-0001.dcm')
040f6ef1394a test_storescu_custom_aet
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 23
diff changeset
2044 b = UploadInstance(_REMOTE, 'Knee/T1/IM-0001-0002.dcm')
040f6ef1394a test_storescu_custom_aet
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 23
diff changeset
2045 c = UploadInstance(_REMOTE, 'Knee/T1/IM-0001-0003.dcm')
040f6ef1394a test_storescu_custom_aet
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 23
diff changeset
2046
040f6ef1394a test_storescu_custom_aet
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 23
diff changeset
2047 j = DoPost(_REMOTE, '/modalities/orthanctest/store', {
040f6ef1394a test_storescu_custom_aet
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 23
diff changeset
2048 'LocalAet' : 'YOP',
040f6ef1394a test_storescu_custom_aet
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 23
diff changeset
2049 'Resources' : [ a['ID'], b['ID'] ]
040f6ef1394a test_storescu_custom_aet
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 23
diff changeset
2050 })
040f6ef1394a test_storescu_custom_aet
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 23
diff changeset
2051
040f6ef1394a test_storescu_custom_aet
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 23
diff changeset
2052 self.assertEqual(2, len(DoGet(_LOCAL, '/instances')))
040f6ef1394a test_storescu_custom_aet
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 23
diff changeset
2053 self.assertEqual('YOP', DoGet(_LOCAL, '/instances/%s/metadata/RemoteAET' % a['ID']))
040f6ef1394a test_storescu_custom_aet
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 23
diff changeset
2054
040f6ef1394a test_storescu_custom_aet
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 23
diff changeset
2055 DropOrthanc(_LOCAL)
040f6ef1394a test_storescu_custom_aet
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 23
diff changeset
2056 self.assertEqual(0, len(DoGet(_LOCAL, '/instances')))
040f6ef1394a test_storescu_custom_aet
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 23
diff changeset
2057
040f6ef1394a test_storescu_custom_aet
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 23
diff changeset
2058 j = DoPost(_REMOTE, '/modalities/orthanctest/store', {
040f6ef1394a test_storescu_custom_aet
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 23
diff changeset
2059 'Resources' : [ c['ID'] ]
040f6ef1394a test_storescu_custom_aet
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 23
diff changeset
2060 })
040f6ef1394a test_storescu_custom_aet
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 23
diff changeset
2061
040f6ef1394a test_storescu_custom_aet
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 23
diff changeset
2062 self.assertEqual(1, len(DoGet(_LOCAL, '/instances')))
040f6ef1394a test_storescu_custom_aet
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 23
diff changeset
2063 self.assertEqual('ORTHANC', DoGet(_LOCAL, '/instances/%s/metadata/RemoteAET' % c['ID']))
040f6ef1394a test_storescu_custom_aet
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 23
diff changeset
2064
040f6ef1394a test_storescu_custom_aet
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 23
diff changeset
2065 DropOrthanc(_REMOTE)
040f6ef1394a test_storescu_custom_aet
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 23
diff changeset
2066 DropOrthanc(_LOCAL)
040f6ef1394a test_storescu_custom_aet
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 23
diff changeset
2067
040f6ef1394a test_storescu_custom_aet
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 23
diff changeset
2068 InstallLuaScript('Lua/AutoroutingChangeAet.lua')
040f6ef1394a test_storescu_custom_aet
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 23
diff changeset
2069 DoPost(_REMOTE, '/tools/execute-script', 'aet = "HELLO"', 'application/lua')
040f6ef1394a test_storescu_custom_aet
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 23
diff changeset
2070
040f6ef1394a test_storescu_custom_aet
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 23
diff changeset
2071 self.assertEqual(0, len(DoGet(_LOCAL, '/instances')))
040f6ef1394a test_storescu_custom_aet
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 23
diff changeset
2072 UploadInstance(_REMOTE, 'Knee/T1/IM-0001-0001.dcm')
040f6ef1394a test_storescu_custom_aet
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 23
diff changeset
2073 WaitEmpty(_REMOTE)
040f6ef1394a test_storescu_custom_aet
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 23
diff changeset
2074 self.assertEqual(1, len(DoGet(_LOCAL, '/instances')))
040f6ef1394a test_storescu_custom_aet
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 23
diff changeset
2075 self.assertEqual('HELLO', DoGet(_LOCAL, '/instances/%s/metadata/RemoteAET' % a['ID']))
040f6ef1394a test_storescu_custom_aet
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 23
diff changeset
2076
040f6ef1394a test_storescu_custom_aet
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 23
diff changeset
2077 DoPost(_REMOTE, '/tools/execute-script', 'aet = nill', 'application/lua')
040f6ef1394a test_storescu_custom_aet
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 23
diff changeset
2078 UploadInstance(_REMOTE, 'Knee/T1/IM-0001-0002.dcm')
040f6ef1394a test_storescu_custom_aet
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 23
diff changeset
2079 WaitEmpty(_REMOTE)
040f6ef1394a test_storescu_custom_aet
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 23
diff changeset
2080 self.assertEqual(2, len(DoGet(_LOCAL, '/instances')))
040f6ef1394a test_storescu_custom_aet
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 23
diff changeset
2081 self.assertEqual('ORTHANC', DoGet(_LOCAL, '/instances/%s/metadata/RemoteAET' % b['ID']))
34
1047d7bc5210 test limit and since arguments while retrieving DICOM resources in the REST API
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 28
diff changeset
2082
1047d7bc5210 test limit and since arguments while retrieving DICOM resources in the REST API
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 28
diff changeset
2083 def test_resources_since_limit(self):
1047d7bc5210 test limit and since arguments while retrieving DICOM resources in the REST API
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 28
diff changeset
2084 # Upload 16 instances
1047d7bc5210 test limit and since arguments while retrieving DICOM resources in the REST API
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 28
diff changeset
2085 for i in range(4):
1047d7bc5210 test limit and since arguments while retrieving DICOM resources in the REST API
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 28
diff changeset
2086 UploadInstance(_REMOTE, 'Brainix/Flair/IM-0001-000%d.dcm' % (i + 1))
1047d7bc5210 test limit and since arguments while retrieving DICOM resources in the REST API
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 28
diff changeset
2087 UploadInstance(_REMOTE, 'Brainix/Epi/IM-0001-000%d.dcm' % (i + 1))
1047d7bc5210 test limit and since arguments while retrieving DICOM resources in the REST API
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 28
diff changeset
2088 UploadInstance(_REMOTE, 'Knee/T1/IM-0001-000%d.dcm' % (i + 1))
1047d7bc5210 test limit and since arguments while retrieving DICOM resources in the REST API
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 28
diff changeset
2089 UploadInstance(_REMOTE, 'Knee/T2/IM-0001-000%d.dcm' % (i + 1))
1047d7bc5210 test limit and since arguments while retrieving DICOM resources in the REST API
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 28
diff changeset
2090
1047d7bc5210 test limit and since arguments while retrieving DICOM resources in the REST API
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 28
diff changeset
2091 self.assertEqual(2, len(DoGet(_REMOTE, '/patients')))
1047d7bc5210 test limit and since arguments while retrieving DICOM resources in the REST API
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 28
diff changeset
2092 self.assertEqual(2, len(DoGet(_REMOTE, '/studies')))
1047d7bc5210 test limit and since arguments while retrieving DICOM resources in the REST API
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 28
diff changeset
2093 self.assertEqual(4, len(DoGet(_REMOTE, '/series')))
1047d7bc5210 test limit and since arguments while retrieving DICOM resources in the REST API
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 28
diff changeset
2094 self.assertEqual(16, len(DoGet(_REMOTE, '/instances')))
1047d7bc5210 test limit and since arguments while retrieving DICOM resources in the REST API
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 28
diff changeset
2095
1047d7bc5210 test limit and since arguments while retrieving DICOM resources in the REST API
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 28
diff changeset
2096 self.assertRaises(Exception, lambda: DoGet(_REMOTE, '/patients&since=10' % i))
1047d7bc5210 test limit and since arguments while retrieving DICOM resources in the REST API
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 28
diff changeset
2097 self.assertRaises(Exception, lambda: DoGet(_REMOTE, '/patients&limit=10' % i))
1047d7bc5210 test limit and since arguments while retrieving DICOM resources in the REST API
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 28
diff changeset
2098
1047d7bc5210 test limit and since arguments while retrieving DICOM resources in the REST API
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 28
diff changeset
2099 self.assertEqual(0, len(DoGet(_REMOTE, '/patients?since=0&limit=0')))
1047d7bc5210 test limit and since arguments while retrieving DICOM resources in the REST API
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 28
diff changeset
2100 self.assertEqual(2, len(DoGet(_REMOTE, '/patients?since=0&limit=100')))
1047d7bc5210 test limit and since arguments while retrieving DICOM resources in the REST API
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 28
diff changeset
2101 self.assertEqual(2, len(DoGet(_REMOTE, '/studies?since=0&limit=100')))
1047d7bc5210 test limit and since arguments while retrieving DICOM resources in the REST API
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 28
diff changeset
2102 self.assertEqual(4, len(DoGet(_REMOTE, '/series?since=0&limit=100')))
1047d7bc5210 test limit and since arguments while retrieving DICOM resources in the REST API
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 28
diff changeset
2103 self.assertEqual(16, len(DoGet(_REMOTE, '/instances?since=0&limit=100')))
1047d7bc5210 test limit and since arguments while retrieving DICOM resources in the REST API
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 28
diff changeset
2104 self.assertEqual(1, len(DoGet(_REMOTE, '/patients?since=1&limit=100')))
1047d7bc5210 test limit and since arguments while retrieving DICOM resources in the REST API
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 28
diff changeset
2105 self.assertEqual(0, len(DoGet(_REMOTE, '/patients?since=2&limit=100')))
1047d7bc5210 test limit and since arguments while retrieving DICOM resources in the REST API
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 28
diff changeset
2106 self.assertEqual(0, len(DoGet(_REMOTE, '/patients?since=3&limit=100')))
1047d7bc5210 test limit and since arguments while retrieving DICOM resources in the REST API
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 28
diff changeset
2107 self.assertEqual(1, len(DoGet(_REMOTE, '/studies?since=1&limit=100')))
1047d7bc5210 test limit and since arguments while retrieving DICOM resources in the REST API
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 28
diff changeset
2108 self.assertEqual(3, len(DoGet(_REMOTE, '/series?since=1&limit=100')))
1047d7bc5210 test limit and since arguments while retrieving DICOM resources in the REST API
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 28
diff changeset
2109 self.assertEqual(2, len(DoGet(_REMOTE, '/series?since=2&limit=100')))
1047d7bc5210 test limit and since arguments while retrieving DICOM resources in the REST API
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 28
diff changeset
2110 self.assertEqual(1, len(DoGet(_REMOTE, '/series?since=3&limit=100')))
1047d7bc5210 test limit and since arguments while retrieving DICOM resources in the REST API
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 28
diff changeset
2111 self.assertEqual(0, len(DoGet(_REMOTE, '/series?since=4&limit=100')))
1047d7bc5210 test limit and since arguments while retrieving DICOM resources in the REST API
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 28
diff changeset
2112 self.assertEqual(0, len(DoGet(_REMOTE, '/series?since=100&limit=100')))
1047d7bc5210 test limit and since arguments while retrieving DICOM resources in the REST API
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 28
diff changeset
2113 self.assertEqual(15, len(DoGet(_REMOTE, '/instances?since=1&limit=100')))
1047d7bc5210 test limit and since arguments while retrieving DICOM resources in the REST API
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 28
diff changeset
2114
1047d7bc5210 test limit and since arguments while retrieving DICOM resources in the REST API
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 28
diff changeset
2115 for limit in [ 1, 2, 3, 7, 16, 17 ]:
1047d7bc5210 test limit and since arguments while retrieving DICOM resources in the REST API
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 28
diff changeset
2116 s = {}
1047d7bc5210 test limit and since arguments while retrieving DICOM resources in the REST API
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 28
diff changeset
2117 since = 0
1047d7bc5210 test limit and since arguments while retrieving DICOM resources in the REST API
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 28
diff changeset
2118 while True:
1047d7bc5210 test limit and since arguments while retrieving DICOM resources in the REST API
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 28
diff changeset
2119 t = DoGet(_REMOTE, '/instances?since=%d&limit=%d' % (since, limit))
1047d7bc5210 test limit and since arguments while retrieving DICOM resources in the REST API
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 28
diff changeset
2120 if len(t) == 0:
1047d7bc5210 test limit and since arguments while retrieving DICOM resources in the REST API
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 28
diff changeset
2121 break
1047d7bc5210 test limit and since arguments while retrieving DICOM resources in the REST API
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 28
diff changeset
2122
1047d7bc5210 test limit and since arguments while retrieving DICOM resources in the REST API
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 28
diff changeset
2123 since += len(t)
1047d7bc5210 test limit and since arguments while retrieving DICOM resources in the REST API
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 28
diff changeset
2124 for i in t:
1047d7bc5210 test limit and since arguments while retrieving DICOM resources in the REST API
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 28
diff changeset
2125 s[i] = None
1047d7bc5210 test limit and since arguments while retrieving DICOM resources in the REST API
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 28
diff changeset
2126
1047d7bc5210 test limit and since arguments while retrieving DICOM resources in the REST API
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 28
diff changeset
2127 self.assertEqual(16, len(s))
1047d7bc5210 test limit and since arguments while retrieving DICOM resources in the REST API
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 28
diff changeset
2128 for instance in DoGet(_REMOTE, '/instances'):
1047d7bc5210 test limit and since arguments while retrieving DICOM resources in the REST API
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 28
diff changeset
2129 self.assertTrue(instance in s)
36
42ad759ef40a test PDF embedding
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 34
diff changeset
2130
42ad759ef40a test PDF embedding
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 34
diff changeset
2131
42ad759ef40a test PDF embedding
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 34
diff changeset
2132 def test_create_pdf(self):
42ad759ef40a test PDF embedding
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 34
diff changeset
2133 # Upload 4 instances
42ad759ef40a test PDF embedding
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 34
diff changeset
2134 brainixInstance = UploadInstance(_REMOTE, 'Brainix/Flair/IM-0001-0001.dcm')['ID']
42ad759ef40a test PDF embedding
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 34
diff changeset
2135 UploadInstance(_REMOTE, 'Brainix/Epi/IM-0001-0001.dcm')
42ad759ef40a test PDF embedding
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 34
diff changeset
2136 UploadInstance(_REMOTE, 'Knee/T1/IM-0001-0001.dcm')
42ad759ef40a test PDF embedding
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 34
diff changeset
2137 UploadInstance(_REMOTE, 'Knee/T2/IM-0001-0001.dcm')
42ad759ef40a test PDF embedding
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 34
diff changeset
2138
42ad759ef40a test PDF embedding
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 34
diff changeset
2139 brainixPatient = '16738bc3-e47ed42a-43ce044c-a3414a45-cb069bd0'
42ad759ef40a test PDF embedding
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 34
diff changeset
2140 brainixStudy = '27f7126f-4f66fb14-03f4081b-f9341db2-53925988'
42ad759ef40a test PDF embedding
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 34
diff changeset
2141 brainixEpi = '2ac1316d-3e432022-62eabff2-c59f5475-9b1ac3f8'
42ad759ef40a test PDF embedding
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 34
diff changeset
2142
42ad759ef40a test PDF embedding
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 34
diff changeset
2143 with open(GetDatabasePath('HelloWorld.pdf'), 'rb') as f:
42ad759ef40a test PDF embedding
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 34
diff changeset
2144 pdf = f.read()
42ad759ef40a test PDF embedding
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 34
diff changeset
2145
42ad759ef40a test PDF embedding
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 34
diff changeset
2146 i = DoPost(_REMOTE, '/tools/create-dicom',
42ad759ef40a test PDF embedding
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 34
diff changeset
2147 json.dumps({
42ad759ef40a test PDF embedding
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 34
diff changeset
2148 'Tags' : {
42ad759ef40a test PDF embedding
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 34
diff changeset
2149 'PatientName' : 'Jodogne',
42ad759ef40a test PDF embedding
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 34
diff changeset
2150 'Modality' : 'CT',
42ad759ef40a test PDF embedding
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 34
diff changeset
2151 },
42ad759ef40a test PDF embedding
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 34
diff changeset
2152 'Content' : 'data:application/pdf;base64,' + base64.b64encode(pdf)
42ad759ef40a test PDF embedding
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 34
diff changeset
2153 }))
42ad759ef40a test PDF embedding
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 34
diff changeset
2154
42ad759ef40a test PDF embedding
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 34
diff changeset
2155 self.assertEqual('Jodogne', DoGet(_REMOTE, '/instances/%s/content/PatientName' % i['ID']).strip())
42ad759ef40a test PDF embedding
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 34
diff changeset
2156 self.assertEqual('OT', DoGet(_REMOTE, '/instances/%s/content/Modality' % i['ID']).strip())
42ad759ef40a test PDF embedding
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 34
diff changeset
2157
42ad759ef40a test PDF embedding
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 34
diff changeset
2158 b = DoGet(_REMOTE, '/instances/%s/content/0042-0011' % i['ID'])
42ad759ef40a test PDF embedding
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 34
diff changeset
2159 self.assertEqual(len(b), len(pdf) + 1)
42ad759ef40a test PDF embedding
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 34
diff changeset
2160 self.assertEqual(ComputeMD5(b), ComputeMD5(pdf + '\0'))
42ad759ef40a test PDF embedding
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 34
diff changeset
2161
42ad759ef40a test PDF embedding
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 34
diff changeset
2162 self.assertRaises(Exception, lambda: DoPost(_REMOTE, '/tools/create-dicom',
42ad759ef40a test PDF embedding
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 34
diff changeset
2163 json.dumps({
42ad759ef40a test PDF embedding
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 34
diff changeset
2164 'Parent' : brainixPatient,
42ad759ef40a test PDF embedding
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 34
diff changeset
2165 'Tags' : {
42ad759ef40a test PDF embedding
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 34
diff changeset
2166 'PatientName' : 'Jodogne',
42ad759ef40a test PDF embedding
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 34
diff changeset
2167 }
42ad759ef40a test PDF embedding
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 34
diff changeset
2168 })))
42ad759ef40a test PDF embedding
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 34
diff changeset
2169
42ad759ef40a test PDF embedding
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 34
diff changeset
2170 i = DoPost(_REMOTE, '/tools/create-dicom',
42ad759ef40a test PDF embedding
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 34
diff changeset
2171 json.dumps({
42ad759ef40a test PDF embedding
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 34
diff changeset
2172 'Parent' : brainixPatient,
42ad759ef40a test PDF embedding
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 34
diff changeset
2173 'Tags' : { 'StudyDescription' : 'PDF^Patient' },
42ad759ef40a test PDF embedding
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 34
diff changeset
2174 'Content' : 'data:application/pdf;base64,' + base64.b64encode(pdf)
42ad759ef40a test PDF embedding
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 34
diff changeset
2175 }))
42ad759ef40a test PDF embedding
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 34
diff changeset
2176
42ad759ef40a test PDF embedding
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 34
diff changeset
2177 self.assertEqual(brainixPatient, DoGet(_REMOTE, '/instances/%s/patient' % i['ID'])['ID'])
42ad759ef40a test PDF embedding
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 34
diff changeset
2178
42ad759ef40a test PDF embedding
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 34
diff changeset
2179 i = DoPost(_REMOTE, '/tools/create-dicom',
42ad759ef40a test PDF embedding
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 34
diff changeset
2180 json.dumps({
42ad759ef40a test PDF embedding
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 34
diff changeset
2181 'Parent' : brainixStudy,
42ad759ef40a test PDF embedding
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 34
diff changeset
2182 'Tags' : { 'SeriesDescription' : 'PDF^Study' },
42ad759ef40a test PDF embedding
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 34
diff changeset
2183 'Content' : 'data:application/pdf;base64,' + base64.b64encode(pdf)
42ad759ef40a test PDF embedding
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 34
diff changeset
2184 }))
42ad759ef40a test PDF embedding
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 34
diff changeset
2185
42ad759ef40a test PDF embedding
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 34
diff changeset
2186 self.assertEqual(brainixStudy, DoGet(_REMOTE, '/instances/%s/study' % i['ID'])['ID'])
42ad759ef40a test PDF embedding
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 34
diff changeset
2187
42ad759ef40a test PDF embedding
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 34
diff changeset
2188 i = DoPost(_REMOTE, '/tools/create-dicom',
42ad759ef40a test PDF embedding
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 34
diff changeset
2189 json.dumps({
42ad759ef40a test PDF embedding
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 34
diff changeset
2190 'Parent' : brainixEpi,
37
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 36
diff changeset
2191 'Tags' : { 'SpecificCharacterSet' : 'ISO_IR 13' },
36
42ad759ef40a test PDF embedding
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 34
diff changeset
2192 'Content' : 'data:application/pdf;base64,' + base64.b64encode(pdf)
42ad759ef40a test PDF embedding
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 34
diff changeset
2193 }))
42ad759ef40a test PDF embedding
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 34
diff changeset
2194
42ad759ef40a test PDF embedding
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 34
diff changeset
2195 self.assertEqual(brainixEpi, DoGet(_REMOTE, '/instances/%s/series' % i['ID'])['ID'])
42ad759ef40a test PDF embedding
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 34
diff changeset
2196
42ad759ef40a test PDF embedding
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 34
diff changeset
2197 b = DoGet(_REMOTE, '/instances/%s/pdf' % i['ID'])
42ad759ef40a test PDF embedding
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 34
diff changeset
2198 self.assertEqual(len(b), len(pdf))
42ad759ef40a test PDF embedding
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 34
diff changeset
2199 self.assertEqual(ComputeMD5(b), ComputeMD5(pdf))
42ad759ef40a test PDF embedding
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 34
diff changeset
2200
42ad759ef40a test PDF embedding
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 34
diff changeset
2201 self.assertRaises(Exception, lambda: DoGet(_REMOTE, '/instances/%s/pdf' % brainixInstance))
38
d147e36c6d18 test_create_series
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 37
diff changeset
2202
d147e36c6d18 test_create_series
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 37
diff changeset
2203
d147e36c6d18 test_create_series
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 37
diff changeset
2204 def test_create_series(self):
d147e36c6d18 test_create_series
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 37
diff changeset
2205 i = DoPost(_REMOTE, '/tools/create-dicom',
d147e36c6d18 test_create_series
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 37
diff changeset
2206 json.dumps({
d147e36c6d18 test_create_series
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 37
diff changeset
2207 'Tags' : {
40
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 39
diff changeset
2208 'SpecificCharacterSet' : 'ISO_IR 100',
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 39
diff changeset
2209 'PatientName' : 'Sébastien Jodogne',
38
d147e36c6d18 test_create_series
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 37
diff changeset
2210 'Modality' : 'CT',
d147e36c6d18 test_create_series
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 37
diff changeset
2211 },
d147e36c6d18 test_create_series
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 37
diff changeset
2212 'Content' : [
40
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 39
diff changeset
2213 {
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 39
diff changeset
2214 'Content': 'data:image/png;base64,iVBORw0KGgoAAAANSUhEUgAAAAUAAAAFCAYAAACNbyblAAAAHElEQVQI12P4//8/w38GIAXDIBKE0DHxgljNBAAO9TXL0Y4OHwAAAABJRU5ErkJggg==', # red dot in RGBA
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 39
diff changeset
2215 'Tags' : { 'ImageComments' : 'Tutu' }
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 39
diff changeset
2216 },
38
d147e36c6d18 test_create_series
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 37
diff changeset
2217 'data:image/png;base64,iVBORw0KGgoAAAANSUhEUgAAABAAAAAQCAYAAAAf8/9hAAAAoUlEQVQ4jZ2SWw3EIBREjwUsYAELa2EtoAULFUCyXAtroRZqoRbox254BdLC/DZnZjoXWJFgCDg8egW2CBEhEnDzyRk+Ecxz2KP/0AL8S99T+jQccAVs22qKwAuPuq0uyNg9cPLh3am+pe/dkHLZtqJHj6vXJrZ7nvzvxxgemXgUwnGfXqpee09mUwp8m022OYP6bLF7mVuVe0y/umxinsAXRd9z0k1ubWsAAAAASUVORK5CYII=',
d147e36c6d18 test_create_series
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 37
diff changeset
2218 ]
d147e36c6d18 test_create_series
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 37
diff changeset
2219 }))
d147e36c6d18 test_create_series
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 37
diff changeset
2220
d147e36c6d18 test_create_series
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 37
diff changeset
2221 s = DoGet(_REMOTE, i['Path'])
d147e36c6d18 test_create_series
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 37
diff changeset
2222 self.assertEqual('Series', s['Type'])
d147e36c6d18 test_create_series
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 37
diff changeset
2223 self.assertEqual(s['ID'], i['ID'])
d147e36c6d18 test_create_series
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 37
diff changeset
2224 self.assertEqual(2, len(s['Instances']))
39
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 38
diff changeset
2225 self.assertEqual(2, s['ExpectedNumberOfInstances'])
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 38
diff changeset
2226 self.assertEqual('Complete', s['Status'])
40
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 39
diff changeset
2227
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 39
diff changeset
2228 a = DoGet(_REMOTE, '/instances/%s/tags?simplify' % s['Instances'][0])
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 39
diff changeset
2229 b = DoGet(_REMOTE, '/instances/%s/tags?simplify' % s['Instances'][1])
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 39
diff changeset
2230 self.assertTrue('ImageComments' in a or 'ImageComments' in b)
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 39
diff changeset
2231 if 'ImageComments' in a:
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 39
diff changeset
2232 self.assertEqual('Tutu', a['ImageComments'])
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 39
diff changeset
2233 else:
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 39
diff changeset
2234 self.assertEqual('Tutu', b['ImageComments'])
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 39
diff changeset
2235
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 39
diff changeset
2236 patient = DoGet(_REMOTE, '/instances/%s/patient' % s['Instances'][0])
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 39
diff changeset
2237 self.assertEqual(patient['MainDicomTags']['PatientName'].encode('utf-8'),
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 39
diff changeset
2238 'Sébastien Jodogne')
47
f610491f74c3 test_create_binary
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 46
diff changeset
2239
f610491f74c3 test_create_binary
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 46
diff changeset
2240
f610491f74c3 test_create_binary
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 46
diff changeset
2241 def test_create_binary(self):
f610491f74c3 test_create_binary
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 46
diff changeset
2242 binary = ''.join(map(chr, range(256)))
f610491f74c3 test_create_binary
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 46
diff changeset
2243 encoded = 'data:application/octet-stream;base64,' + base64.b64encode(binary)
f610491f74c3 test_create_binary
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 46
diff changeset
2244 tags = {
f610491f74c3 test_create_binary
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 46
diff changeset
2245 'PatientName' : 'Jodogne',
f610491f74c3 test_create_binary
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 46
diff changeset
2246 '8899-8899' : encoded
f610491f74c3 test_create_binary
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 46
diff changeset
2247 }
f610491f74c3 test_create_binary
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 46
diff changeset
2248
f610491f74c3 test_create_binary
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 46
diff changeset
2249 i = DoPost(_REMOTE, '/tools/create-dicom',
f610491f74c3 test_create_binary
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 46
diff changeset
2250 json.dumps({
f610491f74c3 test_create_binary
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 46
diff changeset
2251 'Tags' : tags
f610491f74c3 test_create_binary
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 46
diff changeset
2252 }))
f610491f74c3 test_create_binary
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 46
diff changeset
2253
f610491f74c3 test_create_binary
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 46
diff changeset
2254 self.assertEqual('Jodogne', DoGet(_REMOTE, '/instances/%s/content/PatientName' % i['ID']).strip())
f610491f74c3 test_create_binary
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 46
diff changeset
2255 self.assertEqual(binary, DoGet(_REMOTE, '/instances/%s/content/8899-8899' % i['ID']).strip())
f610491f74c3 test_create_binary
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 46
diff changeset
2256
f610491f74c3 test_create_binary
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 46
diff changeset
2257 i = DoPost(_REMOTE, '/tools/create-dicom',
f610491f74c3 test_create_binary
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 46
diff changeset
2258 json.dumps({
f610491f74c3 test_create_binary
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 46
diff changeset
2259 'InterpretBinaryTags' : False,
f610491f74c3 test_create_binary
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 46
diff changeset
2260 'Tags' : tags
f610491f74c3 test_create_binary
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 46
diff changeset
2261 }))
f610491f74c3 test_create_binary
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 46
diff changeset
2262
f610491f74c3 test_create_binary
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 46
diff changeset
2263 self.assertEqual('Jodogne', DoGet(_REMOTE, '/instances/%s/content/PatientName' % i['ID']).strip())
f610491f74c3 test_create_binary
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 46
diff changeset
2264 self.assertEqual(encoded, DoGet(_REMOTE, '/instances/%s/content/8899-8899' % i['ID'])[0:-1])
48
e4352463ff74 test_patient_ids_collision
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 47
diff changeset
2265
e4352463ff74 test_patient_ids_collision
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 47
diff changeset
2266
e4352463ff74 test_patient_ids_collision
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 47
diff changeset
2267 def test_patient_ids_collision(self):
e4352463ff74 test_patient_ids_collision
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 47
diff changeset
2268 # Upload 3 instances from 3 different studies, but with the
e4352463ff74 test_patient_ids_collision
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 47
diff changeset
2269 # same PatientID
e4352463ff74 test_patient_ids_collision
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 47
diff changeset
2270 for i in range(3):
e4352463ff74 test_patient_ids_collision
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 47
diff changeset
2271 UploadInstance(_REMOTE, 'PatientIdsCollision/Image%d.dcm' % (i + 1))
e4352463ff74 test_patient_ids_collision
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 47
diff changeset
2272
e4352463ff74 test_patient_ids_collision
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 47
diff changeset
2273 a = DoPost(_REMOTE, '/tools/find', { 'Level' : 'Patient',
e4352463ff74 test_patient_ids_collision
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 47
diff changeset
2274 'Query' : { 'PatientName' : '*' }})
e4352463ff74 test_patient_ids_collision
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 47
diff changeset
2275 self.assertEqual(1, len(a))
e4352463ff74 test_patient_ids_collision
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 47
diff changeset
2276 self.assertEqual('COMMON', DoGet(_REMOTE, '/patients/%s' % a[0]) ['MainDicomTags']['PatientID'])
e4352463ff74 test_patient_ids_collision
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 47
diff changeset
2277
e4352463ff74 test_patient_ids_collision
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 47
diff changeset
2278 a = DoPost(_REMOTE, '/tools/find', { 'Level' : 'Study',
e4352463ff74 test_patient_ids_collision
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 47
diff changeset
2279 'CaseSensitive' : True,
e4352463ff74 test_patient_ids_collision
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 47
diff changeset
2280 'Query' : { 'PatientName' : 'FOO\\HELLO' }})
e4352463ff74 test_patient_ids_collision
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 47
diff changeset
2281 self.assertEqual(2, len(a))
e4352463ff74 test_patient_ids_collision
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 47
diff changeset
2282
e4352463ff74 test_patient_ids_collision
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 47
diff changeset
2283 a = DoPost(_REMOTE, '/tools/find', { 'Level' : 'Series',
e4352463ff74 test_patient_ids_collision
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 47
diff changeset
2284 'CaseSensitive' : False,
e4352463ff74 test_patient_ids_collision
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 47
diff changeset
2285 'Query' : { 'PatientName' : 'Foo' }})
e4352463ff74 test_patient_ids_collision
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 47
diff changeset
2286 self.assertEqual(1, len(a))
e4352463ff74 test_patient_ids_collision
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 47
diff changeset
2287 self.assertEqual('FOO^SERIES', DoGet(_REMOTE, '/series/%s/study' % a[0]) ['MainDicomTags']['StudyDescription'])
e4352463ff74 test_patient_ids_collision
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 47
diff changeset
2288 self.assertEqual('FOO', DoGet(_REMOTE, '/series/%s/study' % a[0]) ['PatientMainDicomTags']['PatientName'])
e4352463ff74 test_patient_ids_collision
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 47
diff changeset
2289 self.assertEqual('COMMON', DoGet(_REMOTE, '/series/%s/study' % a[0]) ['PatientMainDicomTags']['PatientID'])
e4352463ff74 test_patient_ids_collision
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 47
diff changeset
2290
e4352463ff74 test_patient_ids_collision
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 47
diff changeset
2291 a = DoPost(_REMOTE, '/tools/find', { 'Level' : 'Study',
e4352463ff74 test_patient_ids_collision
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 47
diff changeset
2292 'Query' : { 'PatientName' : '*' }})
e4352463ff74 test_patient_ids_collision
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 47
diff changeset
2293 self.assertEqual(3, len(a))
e4352463ff74 test_patient_ids_collision
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 47
diff changeset
2294 d = map(lambda x: DoGet(_REMOTE, '/studies/%s' % x) ['MainDicomTags']['StudyDescription'], a)
e4352463ff74 test_patient_ids_collision
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 47
diff changeset
2295 self.assertTrue('FOO^SERIES' in d)
e4352463ff74 test_patient_ids_collision
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 47
diff changeset
2296 self.assertTrue('HELLO^SERIES' in d)
e4352463ff74 test_patient_ids_collision
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 47
diff changeset
2297 self.assertTrue('WORLD^SERIES' in d)
e4352463ff74 test_patient_ids_collision
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 47
diff changeset
2298
e4352463ff74 test_patient_ids_collision
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 47
diff changeset
2299 d = map(lambda x: DoGet(_REMOTE, '/studies/%s' % x) ['PatientMainDicomTags']['PatientID'], a)
e4352463ff74 test_patient_ids_collision
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 47
diff changeset
2300 self.assertEqual(1, len(set(d)))
e4352463ff74 test_patient_ids_collision
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 47
diff changeset
2301 self.assertEqual('COMMON', d[0])
e4352463ff74 test_patient_ids_collision
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 47
diff changeset
2302
e4352463ff74 test_patient_ids_collision
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 47
diff changeset
2303 for i in a:
e4352463ff74 test_patient_ids_collision
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 47
diff changeset
2304 d = DoGet(_REMOTE, '/studies/%s' % i) ['MainDicomTags']['StudyDescription']
e4352463ff74 test_patient_ids_collision
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 47
diff changeset
2305 p = DoGet(_REMOTE, '/studies/%s' % i) ['PatientMainDicomTags']['PatientName']
e4352463ff74 test_patient_ids_collision
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 47
diff changeset
2306 self.assertEqual('%s^SERIES' % p, d)
49
e7f9b8199545 test_bitbucket_issue_4
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 48
diff changeset
2307
e7f9b8199545 test_bitbucket_issue_4
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 48
diff changeset
2308
e7f9b8199545 test_bitbucket_issue_4
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 48
diff changeset
2309 def test_bitbucket_issue_4(self):
e7f9b8199545 test_bitbucket_issue_4
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 48
diff changeset
2310 UploadInstance(_REMOTE, 'Brainix/Epi/IM-0001-0001.dcm')
e7f9b8199545 test_bitbucket_issue_4
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 48
diff changeset
2311 UploadInstance(_REMOTE, 'Brainix/Epi/IM-0001-0002.dcm')
e7f9b8199545 test_bitbucket_issue_4
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 48
diff changeset
2312 UploadInstance(_REMOTE, 'Brainix/Epi/IM-0001-0003.dcm')
e7f9b8199545 test_bitbucket_issue_4
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 48
diff changeset
2313 UploadInstance(_REMOTE, 'Formats/Jpeg.dcm')
e7f9b8199545 test_bitbucket_issue_4
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 48
diff changeset
2314 UploadInstance(_REMOTE, 'Formats/JpegLossless.dcm')
e7f9b8199545 test_bitbucket_issue_4
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 48
diff changeset
2315 UploadInstance(_REMOTE, 'Formats/Rle.dcm')
e7f9b8199545 test_bitbucket_issue_4
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 48
diff changeset
2316
e7f9b8199545 test_bitbucket_issue_4
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 48
diff changeset
2317 self.assertEqual(0, len(DoGet(_LOCAL, '/instances')))
e7f9b8199545 test_bitbucket_issue_4
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 48
diff changeset
2318 self.assertEqual(6, len(DoGet(_REMOTE, '/instances')))
e7f9b8199545 test_bitbucket_issue_4
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 48
diff changeset
2319
e7f9b8199545 test_bitbucket_issue_4
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 48
diff changeset
2320 p = DoGet(_REMOTE, '/patients')
e7f9b8199545 test_bitbucket_issue_4
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 48
diff changeset
2321 self.assertEqual(2, len(p))
e7f9b8199545 test_bitbucket_issue_4
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 48
diff changeset
2322 i1 = map(lambda x: x['ID'], DoGet(_REMOTE, '/patients/%s/instances' % p[0]))
e7f9b8199545 test_bitbucket_issue_4
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 48
diff changeset
2323 i2 = map(lambda x: x['ID'], DoGet(_REMOTE, '/patients/%s/instances' % p[1]))
e7f9b8199545 test_bitbucket_issue_4
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 48
diff changeset
2324 self.assertEqual(3, len(i1))
e7f9b8199545 test_bitbucket_issue_4
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 48
diff changeset
2325 self.assertEqual(3, len(i2))
e7f9b8199545 test_bitbucket_issue_4
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 48
diff changeset
2326
e7f9b8199545 test_bitbucket_issue_4
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 48
diff changeset
2327 j = DoPost(_REMOTE, '/modalities/orthanctest/store', i2[0:1] + i1 + i2[1:3])
e7f9b8199545 test_bitbucket_issue_4
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 48
diff changeset
2328
e7f9b8199545 test_bitbucket_issue_4
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 48
diff changeset
2329 self.assertEqual(6, len(DoGet(_LOCAL, '/instances')))
50
8de63d56cf11 test_create_sequence
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 49
diff changeset
2330
8de63d56cf11 test_create_sequence
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 49
diff changeset
2331
8de63d56cf11 test_create_sequence
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 49
diff changeset
2332 def test_create_sequence(self):
8de63d56cf11 test_create_sequence
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 49
diff changeset
2333 i = DoPost(_REMOTE, '/tools/create-dicom',
8de63d56cf11 test_create_sequence
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 49
diff changeset
2334 json.dumps({
8de63d56cf11 test_create_sequence
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 49
diff changeset
2335 'Tags' : {
8de63d56cf11 test_create_sequence
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 49
diff changeset
2336 'SpecificCharacterSet': 'ISO_IR 100', # Encode using Latin1
8de63d56cf11 test_create_sequence
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 49
diff changeset
2337 'PatientName': 'Jodogne^',
51
264a20a0276d test_modify_sequence
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 50
diff changeset
2338 'ReferencedStudySequence': GenerateTestSequence(),
50
8de63d56cf11 test_create_sequence
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 49
diff changeset
2339 }
8de63d56cf11 test_create_sequence
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 49
diff changeset
2340 }))['ID']
8de63d56cf11 test_create_sequence
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 49
diff changeset
2341
8de63d56cf11 test_create_sequence
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 49
diff changeset
2342 self.assertEqual('Jodogne^', DoGet(_REMOTE, '/instances/%s/content/PatientName' % i))
8de63d56cf11 test_create_sequence
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 49
diff changeset
2343 self.assertEqual('Hello^', DoGet(_REMOTE, '/instances/%s/content/ReferencedStudySequence/0/StudyDescription' % i))
8de63d56cf11 test_create_sequence
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 49
diff changeset
2344 self.assertEqual('Toto', DoGet(_REMOTE, '/instances/%s/content/ReferencedStudySequence/0/ReferencedStudySequence/0/StudyDescription' % i))
8de63d56cf11 test_create_sequence
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 49
diff changeset
2345 self.assertEqual('Tata', DoGet(_REMOTE, '/instances/%s/content/ReferencedStudySequence/0/ReferencedStudySequence/1/StudyDescription' % i))
8de63d56cf11 test_create_sequence
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 49
diff changeset
2346 self.assertEqual(u'Sébastien^'.encode('latin-1'),
8de63d56cf11 test_create_sequence
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 49
diff changeset
2347 DoGet(_REMOTE, '/instances/%s/content/ReferencedStudySequence/1/StudyDescription' % i))
51
264a20a0276d test_modify_sequence
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 50
diff changeset
2348
264a20a0276d test_modify_sequence
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 50
diff changeset
2349
264a20a0276d test_modify_sequence
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 50
diff changeset
2350 def test_modify_sequence(self):
264a20a0276d test_modify_sequence
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 50
diff changeset
2351 i = UploadInstance(_REMOTE, 'PrivateTags.dcm')['ID']
264a20a0276d test_modify_sequence
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 50
diff changeset
2352 self.assertRaises(Exception, lambda: DoGet(_REMOTE, '/instances/%s/content/ReferencedStudySequence' % i))
264a20a0276d test_modify_sequence
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 50
diff changeset
2353
264a20a0276d test_modify_sequence
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 50
diff changeset
2354 j = DoPost(_REMOTE, '/instances/%s/modify' % i,
264a20a0276d test_modify_sequence
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 50
diff changeset
2355 json.dumps({
264a20a0276d test_modify_sequence
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 50
diff changeset
2356 "Replace" : {
264a20a0276d test_modify_sequence
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 50
diff changeset
2357 "PatientName" : "hello",
264a20a0276d test_modify_sequence
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 50
diff changeset
2358 'ReferencedStudySequence': GenerateTestSequence(),
264a20a0276d test_modify_sequence
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 50
diff changeset
2359 },
264a20a0276d test_modify_sequence
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 50
diff changeset
2360 }),
264a20a0276d test_modify_sequence
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 50
diff changeset
2361 'application/json')
264a20a0276d test_modify_sequence
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 50
diff changeset
2362 j = DoPost(_REMOTE, '/instances', j, 'application/dicom')['ID']
264a20a0276d test_modify_sequence
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 50
diff changeset
2363 DoDelete(_REMOTE, '/instances/%s' % i)
264a20a0276d test_modify_sequence
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 50
diff changeset
2364
52
7c08e542db23 test_compression
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 51
diff changeset
2365 self.assertEqual(2, len(DoGet(_REMOTE, '/instances/%s/content/ReferencedStudySequence' % j)))
7c08e542db23 test_compression
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 51
diff changeset
2366
7c08e542db23 test_compression
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 51
diff changeset
2367
7c08e542db23 test_compression
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 51
diff changeset
2368 def test_compression(self):
7c08e542db23 test_compression
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 51
diff changeset
2369 i = UploadInstance(_REMOTE, 'DummyCT.dcm')['ID']
7c08e542db23 test_compression
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 51
diff changeset
2370
7c08e542db23 test_compression
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 51
diff changeset
2371 data = DoGetRaw(_REMOTE, '/instances/%s/attachments/dicom-as-json/data' % i)[1]
7c08e542db23 test_compression
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 51
diff changeset
2372
7c08e542db23 test_compression
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 51
diff changeset
2373 # "StorageCompression" is enabled in the Orthanc to be tested,
7c08e542db23 test_compression
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 51
diff changeset
2374 # uncompress the data before running the test
7c08e542db23 test_compression
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 51
diff changeset
2375 if DoGet(_REMOTE, '/instances/%s/attachments/dicom-as-json/is-compressed' % i) != 0:
7c08e542db23 test_compression
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 51
diff changeset
2376 DoPost(_REMOTE, '/instances/%s/attachments/dicom-as-json/uncompress' % i)
7c08e542db23 test_compression
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 51
diff changeset
2377
7c08e542db23 test_compression
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 51
diff changeset
2378 cs = DoGet(_REMOTE, '/statistics')['TotalDiskSize']
7c08e542db23 test_compression
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 51
diff changeset
2379 us = DoGet(_REMOTE, '/statistics')['TotalUncompressedSize']
7c08e542db23 test_compression
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 51
diff changeset
2380 size = DoGet(_REMOTE, '/instances/%s/attachments/dicom-as-json/size' % i)
7c08e542db23 test_compression
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 51
diff changeset
2381 md5 = DoGet(_REMOTE, '/instances/%s/attachments/dicom-as-json/md5' % i)
7c08e542db23 test_compression
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 51
diff changeset
2382 self.assertEqual(data, DoGetRaw(_REMOTE, '/instances/%s/attachments/dicom-as-json/compressed-data' % i)[1])
7c08e542db23 test_compression
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 51
diff changeset
2383 self.assertEqual(md5, DoGet(_REMOTE, '/instances/%s/attachments/dicom-as-json/compressed-md5' % i))
7c08e542db23 test_compression
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 51
diff changeset
2384 self.assertEqual(size, DoGet(_REMOTE, '/instances/%s/attachments/dicom-as-json/compressed-size' % i))
7c08e542db23 test_compression
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 51
diff changeset
2385
7c08e542db23 test_compression
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 51
diff changeset
2386 ops = DoGet(_REMOTE, '/instances/%s/attachments/dicom-as-json' % i)
7c08e542db23 test_compression
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 51
diff changeset
2387 self.assertTrue('compress' in ops)
7c08e542db23 test_compression
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 51
diff changeset
2388 self.assertTrue('uncompress' in ops)
7c08e542db23 test_compression
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 51
diff changeset
2389 self.assertTrue('is-compressed' in ops)
7c08e542db23 test_compression
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 51
diff changeset
2390 self.assertEqual(0, DoGet(_REMOTE, '/instances/%s/attachments/dicom-as-json/is-compressed' % i))
7c08e542db23 test_compression
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 51
diff changeset
2391 DoPost(_REMOTE, '/instances/%s/attachments/dicom-as-json/verify-md5' % i)
7c08e542db23 test_compression
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 51
diff changeset
2392
7c08e542db23 test_compression
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 51
diff changeset
2393 DoPost(_REMOTE, '/instances/%s/attachments/dicom-as-json/compress' % i)
7c08e542db23 test_compression
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 51
diff changeset
2394 DoPost(_REMOTE, '/instances/%s/attachments/dicom-as-json/verify-md5' % i)
7c08e542db23 test_compression
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 51
diff changeset
2395 self.assertEqual(1, DoGet(_REMOTE, '/instances/%s/attachments/dicom-as-json/is-compressed' % i))
7c08e542db23 test_compression
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 51
diff changeset
2396 self.assertLess(cs, DoGet(_REMOTE, '/statistics')['TotalDiskSize'])
7c08e542db23 test_compression
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 51
diff changeset
2397 self.assertEqual(us, DoGet(_REMOTE, '/statistics')['TotalUncompressedSize'])
7c08e542db23 test_compression
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 51
diff changeset
2398 self.assertGreater(len(data), len(DoGetRaw(_REMOTE, '/instances/%s/attachments/dicom-as-json/compressed-data' % i)[1]))
7c08e542db23 test_compression
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 51
diff changeset
2399 self.assertGreater(size, DoGet(_REMOTE, '/instances/%s/attachments/dicom-as-json/compressed-size' % i))
7c08e542db23 test_compression
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 51
diff changeset
2400 self.assertEqual(size, DoGet(_REMOTE, '/instances/%s/attachments/dicom-as-json/size' % i))
7c08e542db23 test_compression
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 51
diff changeset
2401 self.assertEqual(md5, DoGet(_REMOTE, '/instances/%s/attachments/dicom-as-json/md5' % i))
7c08e542db23 test_compression
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 51
diff changeset
2402 self.assertNotEqual(md5, DoGet(_REMOTE, '/instances/%s/attachments/dicom-as-json/compressed-md5' % i))
7c08e542db23 test_compression
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 51
diff changeset
2403
7c08e542db23 test_compression
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 51
diff changeset
2404 DoPost(_REMOTE, '/instances/%s/attachments/dicom-as-json/uncompress' % i)
7c08e542db23 test_compression
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 51
diff changeset
2405 DoPost(_REMOTE, '/instances/%s/attachments/dicom-as-json/verify-md5' % i)
7c08e542db23 test_compression
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 51
diff changeset
2406 self.assertEqual(0, DoGet(_REMOTE, '/instances/%s/attachments/dicom-as-json/is-compressed' % i))
7c08e542db23 test_compression
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 51
diff changeset
2407 self.assertEqual(data, DoGetRaw(_REMOTE, '/instances/%s/attachments/dicom-as-json/compressed-data' % i)[1])
7c08e542db23 test_compression
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 51
diff changeset
2408 self.assertEqual(size, DoGet(_REMOTE, '/instances/%s/attachments/dicom-as-json/compressed-size' % i))
7c08e542db23 test_compression
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 51
diff changeset
2409 self.assertEqual(size, DoGet(_REMOTE, '/instances/%s/attachments/dicom-as-json/size' % i))
7c08e542db23 test_compression
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 51
diff changeset
2410 self.assertEqual(md5, DoGet(_REMOTE, '/instances/%s/attachments/dicom-as-json/md5' % i))
7c08e542db23 test_compression
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 51
diff changeset
2411 self.assertEqual(md5, DoGet(_REMOTE, '/instances/%s/attachments/dicom-as-json/compressed-md5' % i))
7c08e542db23 test_compression
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 51
diff changeset
2412 self.assertEqual(cs, DoGet(_REMOTE, '/statistics')['TotalDiskSize'])
7c08e542db23 test_compression
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 51
diff changeset
2413 self.assertEqual(us, DoGet(_REMOTE, '/statistics')['TotalUncompressedSize'])
53
e0d1ee04119f test_ordered_slices
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 52
diff changeset
2414
e0d1ee04119f test_ordered_slices
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 52
diff changeset
2415
e0d1ee04119f test_ordered_slices
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 52
diff changeset
2416 def test_ordered_slices(self):
e0d1ee04119f test_ordered_slices
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 52
diff changeset
2417 i = UploadInstance(_REMOTE, 'Multiframe.dcm')['ID']
e0d1ee04119f test_ordered_slices
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 52
diff changeset
2418 s = DoGet(_REMOTE, '/instances/%s' % i)['ParentSeries']
e0d1ee04119f test_ordered_slices
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 52
diff changeset
2419 o = DoGet(_REMOTE, '/series/%s/ordered-slices' % s)
e0d1ee04119f test_ordered_slices
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 52
diff changeset
2420 self.assertEqual('Sequence', o['Type'])
e0d1ee04119f test_ordered_slices
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 52
diff changeset
2421 self.assertEqual(1, len(o['Dicom']))
e0d1ee04119f test_ordered_slices
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 52
diff changeset
2422 self.assertEqual('/instances/9e05eb0a-18b6268c-e0d36085-8ddab517-3b5aec02/file', o['Dicom'][0])
e0d1ee04119f test_ordered_slices
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 52
diff changeset
2423 self.assertEqual(76, len(o['Slices']))
e0d1ee04119f test_ordered_slices
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 52
diff changeset
2424 for j in range(76):
e0d1ee04119f test_ordered_slices
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 52
diff changeset
2425 self.assertEqual('/instances/9e05eb0a-18b6268c-e0d36085-8ddab517-3b5aec02/frames/%d' % j, o['Slices'][j])
e0d1ee04119f test_ordered_slices
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 52
diff changeset
2426
e0d1ee04119f test_ordered_slices
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 52
diff changeset
2427 i = UploadInstance(_REMOTE, 'Brainix/Epi/IM-0001-0001.dcm')['ID']
e0d1ee04119f test_ordered_slices
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 52
diff changeset
2428 j = UploadInstance(_REMOTE, 'Brainix/Epi/IM-0001-0002.dcm')['ID']
e0d1ee04119f test_ordered_slices
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 52
diff changeset
2429 k = UploadInstance(_REMOTE, 'Brainix/Epi/IM-0001-0003.dcm')['ID']
e0d1ee04119f test_ordered_slices
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 52
diff changeset
2430 s = DoGet(_REMOTE, '/instances/%s' % i)['ParentSeries']
e0d1ee04119f test_ordered_slices
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 52
diff changeset
2431 o = DoGet(_REMOTE, '/series/%s/ordered-slices' % s)
e0d1ee04119f test_ordered_slices
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 52
diff changeset
2432
e0d1ee04119f test_ordered_slices
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 52
diff changeset
2433 self.assertEqual('Volume', o['Type'])
e0d1ee04119f test_ordered_slices
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 52
diff changeset
2434 self.assertEqual(3, len(o['Dicom']))
e0d1ee04119f test_ordered_slices
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 52
diff changeset
2435 self.assertEqual(3, len(o['Slices']))
e0d1ee04119f test_ordered_slices
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 52
diff changeset
2436 self.assertEqual('/instances/%s/file' % i, o['Dicom'][2])
e0d1ee04119f test_ordered_slices
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 52
diff changeset
2437 self.assertEqual('/instances/%s/file' % j, o['Dicom'][1])
e0d1ee04119f test_ordered_slices
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 52
diff changeset
2438 self.assertEqual('/instances/%s/file' % k, o['Dicom'][0])
e0d1ee04119f test_ordered_slices
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 52
diff changeset
2439 self.assertEqual('/instances/%s/frames/0' % i, o['Slices'][2])
e0d1ee04119f test_ordered_slices
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 52
diff changeset
2440 self.assertEqual('/instances/%s/frames/0' % j, o['Slices'][1])
e0d1ee04119f test_ordered_slices
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 52
diff changeset
2441 self.assertEqual('/instances/%s/frames/0' % k, o['Slices'][0])
e0d1ee04119f test_ordered_slices
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 52
diff changeset
2442
e0d1ee04119f test_ordered_slices
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 52
diff changeset
2443 i = UploadInstance(_REMOTE, 'Beaufix/IM-0001-0001.dcm')['ID']
e0d1ee04119f test_ordered_slices
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 52
diff changeset
2444 j = UploadInstance(_REMOTE, 'Beaufix/IM-0001-0002.dcm')['ID']
e0d1ee04119f test_ordered_slices
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 52
diff changeset
2445 s = DoGet(_REMOTE, '/instances/%s' % i)['ParentSeries']
e0d1ee04119f test_ordered_slices
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 52
diff changeset
2446 o = DoGet(_REMOTE, '/series/%s/ordered-slices' % s)
e0d1ee04119f test_ordered_slices
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 52
diff changeset
2447
e0d1ee04119f test_ordered_slices
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 52
diff changeset
2448 self.assertEqual('Sequence', o['Type'])
e0d1ee04119f test_ordered_slices
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 52
diff changeset
2449 self.assertEqual(2, len(o['Dicom']))
e0d1ee04119f test_ordered_slices
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 52
diff changeset
2450 self.assertEqual(2, len(o['Slices']))
e0d1ee04119f test_ordered_slices
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 52
diff changeset
2451 self.assertEqual('/instances/%s/file' % i, o['Dicom'][0])
e0d1ee04119f test_ordered_slices
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 52
diff changeset
2452 self.assertEqual('/instances/%s/file' % j, o['Dicom'][1])
e0d1ee04119f test_ordered_slices
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 52
diff changeset
2453 self.assertEqual('/instances/%s/frames/0' % i, o['Slices'][0])
e0d1ee04119f test_ordered_slices
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 52
diff changeset
2454 self.assertEqual('/instances/%s/frames/0' % j, o['Slices'][1])