Mercurial > hg > orthanc-tests
annotate Tests/Tests.py @ 341:66a36befb208
extending Toolbox.DoPropFind()
author | Sebastien Jodogne <s.jodogne@gmail.com> |
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date | Wed, 14 Oct 2020 19:55:26 +0200 |
parents | ec13ace43bde |
children | bf8369ea3ff1 |
rev | line source |
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22 | 1 #!/usr/bin/env python |
2 # -*- coding: utf-8 -*- | |
3 | |
4 | |
3 | 5 # Orthanc - A Lightweight, RESTful DICOM Store |
73 | 6 # Copyright (C) 2012-2016 Sebastien Jodogne, Medical Physics |
3 | 7 # Department, University Hospital of Liege, Belgium |
260
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8 # Copyright (C) 2017-2020 Osimis S.A., Belgium |
3 | 9 # |
10 # This program is free software: you can redistribute it and/or | |
11 # modify it under the terms of the GNU General Public License as | |
12 # published by the Free Software Foundation, either version 3 of the | |
13 # License, or (at your option) any later version. | |
14 # | |
15 # This program is distributed in the hope that it will be useful, but | |
16 # WITHOUT ANY WARRANTY; without even the implied warranty of | |
17 # MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU | |
18 # General Public License for more details. | |
19 # | |
20 # You should have received a copy of the GNU General Public License | |
21 # along with this program. If not, see <http://www.gnu.org/licenses/>. | |
22 | |
23 | |
202
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24 import base64 |
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25 import bz2 |
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26 import copy |
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27 import pprint |
14 | 28 import tempfile |
3 | 29 import unittest |
295 | 30 import shutil |
3 | 31 |
11 | 32 from PIL import ImageChops |
3 | 33 from Toolbox import * |
13 | 34 from xml.dom import minidom |
312 | 35 from datetime import datetime |
3 | 36 |
37 _LOCAL = None | |
38 _REMOTE = None | |
306
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39 _DOCKER = False |
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40 |
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41 |
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42 def SetOrthancParameters(local, remote, withinDocker): |
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43 global _LOCAL, _REMOTE, _DOCKER |
3 | 44 _LOCAL = local |
45 _REMOTE = remote | |
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46 _DOCKER = withinDocker |
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47 |
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48 |
14 | 49 def ExtractDicomTags(rawDicom, tags): |
50 with tempfile.NamedTemporaryFile(delete = True) as f: | |
51 f.write(rawDicom) | |
52 f.flush() | |
45 | 53 data = subprocess.check_output([ FindExecutable('dcm2xml'), f.name ]) |
14 | 54 |
55 result = [] | |
56 for tag in tags: | |
57 match = re.search('<element[^>]+name="%s">([^>]*)</element>' % tag, data) | |
58 if match == None: | |
59 result.append('') | |
60 else: | |
61 result.append(match.group(1)) | |
62 | |
63 return result | |
64 | |
65 | |
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66 def CompareLists(a, b): |
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67 if len(a) != len(b): |
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68 return False |
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69 |
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70 for i in range(len(a)): |
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71 d = a[i] - b[i] |
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72 if abs(d) >= 0.51: # Add some tolerance for rounding errors |
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73 return False |
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74 |
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75 return True |
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76 |
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77 |
80
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78 def CompareTags(a, b, tagsToIgnore): |
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79 for i in tagsToIgnore: |
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80 if i in a: |
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81 del a[i] |
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82 if i in b: |
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83 del b[i] |
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84 |
123 | 85 if a.keys() == b.keys(): |
86 return True | |
87 else: | |
88 print('Mismatch in tags: %s' % str(set(a.keys()) ^ set(b.keys()))) | |
89 return False | |
80
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90 |
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91 |
71
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92 def CallFindScu(args): |
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93 p = subprocess.Popen([ FindExecutable('findscu'), |
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94 '-P', '-aec', _REMOTE['DicomAet'], '-aet', _LOCAL['DicomAet'], |
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95 _REMOTE['Server'], str(_REMOTE['DicomPort']) ] + args, |
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96 stderr=subprocess.PIPE) |
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97 return p.communicate()[1] |
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98 |
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99 |
142 | 100 def GetMoveScuCommand(): |
101 return [ | |
102 FindExecutable('movescu'), | |
103 '--move', _LOCAL['DicomAet'], # Target AET (i.e. storescp) | |
104 '--call', _REMOTE['DicomAet'], # Called AET (i.e. Orthanc) | |
105 '--aetitle', _LOCAL['DicomAet'], # Calling AET (i.e. storescp) | |
106 _REMOTE['Server'], | |
107 str(_REMOTE['DicomPort']) | |
108 ] | |
109 | |
231
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110 |
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111 def CallMoveScu(args): |
231
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112 try: |
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113 subprocess.check_call(GetMoveScuCommand() + args, |
318
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114 stderr = subprocess.PIPE) |
231
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115 except subprocess.CalledProcessError as e: |
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116 # The error code "69" corresponds to "EXITCODE_CMOVE_ERROR", |
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117 # that has been introduced in DCMTK 3.6.2. This error code is |
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118 # expected by some tests that try and C-MOVE non-existing |
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119 # DICOM instances. |
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120 # https://groups.google.com/d/msg/orthanc-users/DCRc5NeSCbM/DG-pSWj-BwAJ |
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121 if e.returncode != 69: |
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122 raise e |
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123 |
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124 |
51
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125 def GenerateTestSequence(): |
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126 return [ |
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127 { |
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128 'StudyDescription': 'Hello^', |
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129 'ReferencedStudySequence' : [ |
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130 { |
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131 'StudyDescription': 'Toto', |
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132 }, |
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133 { |
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134 'StudyDescription': 'Tata', |
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135 }, |
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136 ] |
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137 }, |
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138 { |
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139 'StudyDescription': 'Sébastien^', |
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140 'StudyDate' : '19700202', |
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141 } |
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142 ] |
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143 |
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144 |
3 | 145 class Orthanc(unittest.TestCase): |
146 def setUp(self): | |
83 | 147 if (sys.version_info >= (3, 0)): |
148 # Remove annoying warnings about unclosed socket in Python 3 | |
149 import warnings | |
150 warnings.simplefilter("ignore", ResourceWarning) | |
151 | |
3 | 152 DropOrthanc(_LOCAL) |
153 DropOrthanc(_REMOTE) | |
174 | 154 UninstallLuaCallbacks(_REMOTE) |
312 | 155 #print("%s: In test %s" % (datetime.now(), self._testMethodName)) |
44
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156 |
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157 def AssertSameImages(self, truth, url): |
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158 im = GetImage(_REMOTE, url) |
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159 self.assertTrue(CompareLists(truth, im.getdata())) |
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160 |
3 | 161 |
162 def test_system(self): | |
177 | 163 self.assertTrue('Version' in DoGet(_REMOTE, '/system')) |
164 self.assertEqual('0', DoGet(_REMOTE, '/statistics')['TotalDiskSize']) | |
165 self.assertEqual('0', DoGet(_REMOTE, '/statistics')['TotalUncompressedSize']) | |
166 | |
167 systemInfo = DoGet(_REMOTE, '/system') | |
168 if systemInfo["Version"] == "mainline": | |
169 print "Skipping version checks since you're currently in mainline" | |
170 return | |
171 | |
173 | 172 self.assertTrue(IsOrthancVersionAbove(_LOCAL, 0, 8, 6)) |
173 self.assertFalse(IsOrthancVersionAbove(_LOCAL, 0, 8, 7)) | |
174 self.assertTrue(IsOrthancVersionAbove(_LOCAL, 0, 7, 6)) | |
175 self.assertFalse(IsOrthancVersionAbove(_LOCAL, 0, 9, 6)) | |
176 self.assertFalse(IsOrthancVersionAbove(_LOCAL, 1, 8, 6)) | |
3 | 177 |
178 def test_upload(self): | |
173 | 179 self.assertEqual('0', DoGet(_REMOTE, '/statistics')['TotalDiskSize']) |
180 self.assertEqual('0', DoGet(_REMOTE, '/statistics')['TotalUncompressedSize']) | |
181 | |
182 sizeDummyCT = 2472 | |
183 sizeOverwrite = 2476 | |
184 instance = '66a662ce-7430e543-bad44d47-0dc5a943-ec7a538d' | |
185 | |
3 | 186 u = UploadInstance(_REMOTE, 'DummyCT.dcm') |
183 | 187 self.assertEqual(instance, u['ID']) |
3 | 188 self.assertEqual('Success', u['Status']) |
173 | 189 |
183 | 190 if True: |
191 # New test for Orthanc 1.4.3 | |
192 self.assertEqual('f2635388-f01d497a-15f7c06b-ad7dba06-c4c599fe', u['ParentSeries']) | |
193 self.assertEqual('b9c08539-26f93bde-c81ab0d7-bffaf2cb-a4d0bdd0', u['ParentStudy']) | |
194 self.assertEqual('6816cb19-844d5aee-85245eba-28e841e6-2414fae2', u['ParentPatient']) | |
195 | |
173 | 196 j = int(DoGet(_REMOTE, '/instances/%s/attachments/dicom-as-json/size' % instance)) |
197 s = sizeDummyCT + j | |
198 self.assertEqual('%d' % s, DoGet(_REMOTE, '/statistics')['TotalDiskSize']) | |
199 self.assertEqual('%d' % s, DoGet(_REMOTE, '/statistics')['TotalUncompressedSize']) | |
200 | |
3 | 201 u = UploadInstance(_REMOTE, 'DummyCT.dcm') |
202 self.assertEqual(1, len(DoGet(_REMOTE, '/patients'))) | |
203 self.assertEqual(1, len(DoGet(_REMOTE, '/studies'))) | |
204 self.assertEqual(1, len(DoGet(_REMOTE, '/series'))) | |
205 self.assertEqual(1, len(DoGet(_REMOTE, '/instances'))) | |
173 | 206 self.assertEqual('%d' % s, DoGet(_REMOTE, '/statistics')['TotalDiskSize']) |
207 self.assertEqual('%d' % s, DoGet(_REMOTE, '/statistics')['TotalUncompressedSize']) | |
208 | |
209 i = DoGet(_REMOTE, '/instances/%s/simplified-tags' % instance) | |
3 | 210 self.assertEqual('20070101', i['StudyDate']) |
173 | 211 self.assertEqual('KNIX', i['PatientName']) |
212 | |
213 if IsOrthancVersionAbove(_REMOTE, 1, 4, 2): | |
214 # Overwriting | |
215 self.assertEqual('Success', u['Status']) | |
216 else: | |
217 self.assertEqual('AlreadyStored', u['Status']) | |
218 | |
219 u = UploadInstance(_REMOTE, 'DummyCT-overwrite.dcm') | |
220 self.assertEqual(1, len(DoGet(_REMOTE, '/patients'))) | |
221 self.assertEqual(1, len(DoGet(_REMOTE, '/studies'))) | |
222 self.assertEqual(1, len(DoGet(_REMOTE, '/series'))) | |
223 self.assertEqual(1, len(DoGet(_REMOTE, '/instances'))) | |
224 | |
225 if IsOrthancVersionAbove(_REMOTE, 1, 4, 2): | |
226 # Overwriting | |
227 self.assertEqual('Success', u['Status']) | |
228 j2 = int(DoGet(_REMOTE, '/instances/%s/attachments/dicom-as-json/size' % instance)) | |
229 s2 = sizeOverwrite + j2 | |
230 self.assertNotEqual(s, s2) | |
231 self.assertNotEqual(j, j2) | |
232 self.assertEqual('%d' % s2, DoGet(_REMOTE, '/statistics')['TotalDiskSize']) | |
233 self.assertEqual('%d' % s2, DoGet(_REMOTE, '/statistics')['TotalUncompressedSize']) | |
234 i = DoGet(_REMOTE, '/instances/%s/simplified-tags' % instance) | |
235 self.assertEqual('ANOTHER', i['PatientName']) | |
236 else: | |
237 self.assertEqual('AlreadyStored', u['Status']) | |
238 self.assertEqual('%d' % s, DoGet(_REMOTE, '/statistics')['TotalDiskSize']) | |
239 self.assertEqual('%d' % s, DoGet(_REMOTE, '/statistics')['TotalUncompressedSize']) | |
3 | 240 |
5 | 241 def test_upload_2(self): |
3 | 242 i = UploadInstance(_REMOTE, 'DummyCT.dcm')['ID'] |
243 instance = DoGet(_REMOTE, '/instances/%s' % i) | |
244 self.assertEqual(i, instance['ID']) | |
245 self.assertEqual('1.2.840.113619.2.176.2025.1499492.7040.1171286242.109', | |
246 instance['MainDicomTags']['SOPInstanceUID']) | |
247 | |
248 series = DoGet(_REMOTE, '/series/%s' % instance['ParentSeries']) | |
249 self.assertEqual('1.2.840.113619.2.176.2025.1499492.7391.1171285944.394', | |
250 series['MainDicomTags']['SeriesInstanceUID']) | |
251 | |
252 study = DoGet(_REMOTE, '/studies/%s' % series['ParentStudy']) | |
253 self.assertEqual('1.2.840.113619.2.176.2025.1499492.7391.1171285944.390', | |
254 study['MainDicomTags']['StudyInstanceUID']) | |
255 | |
256 patient = DoGet(_REMOTE, '/patients/%s' % study['ParentPatient']) | |
257 self.assertEqual('ozp00SjY2xG', | |
258 patient['MainDicomTags']['PatientID']) | |
259 | |
260 dicom = DoGet(_REMOTE, '/instances/%s/file' % instance['ID']) | |
261 self.assertEqual(2472, len(dicom)) | |
262 self.assertEqual('3e29b869978b6db4886355a2b1132124', ComputeMD5(dicom)) | |
263 self.assertEqual(1, len(DoGet(_REMOTE, '/instances/%s/frames' % i))) | |
264 self.assertEqual('TWINOW', DoGet(_REMOTE, '/instances/%s/simplified-tags' % i)['StationName']) | |
265 self.assertEqual('TWINOW', DoGet(_REMOTE, '/instances/%s/tags' % i)['0008,1010']['Value']) | |
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266 self.assertEqual('TWINOW', DoGet(_REMOTE, '/instances/%s/tags?simplify' % i)['StationName']) |
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267 self.assertEqual('TWINOW', DoGet(_REMOTE, '/instances/%s/tags?short' % i)['0008,1010']) |
3 | 268 |
269 | |
5 | 270 def test_images(self): |
271 i = UploadInstance(_REMOTE, 'Phenix/IM-0001-0001.dcm')['ID'] | |
272 self.assertEqual(1, len(DoGet(_REMOTE, '/instances/%s/frames' % i))) | |
3 | 273 |
5 | 274 im = GetImage(_REMOTE, '/instances/%s/preview' % i) |
275 self.assertEqual("L", im.mode) | |
276 self.assertEqual(512, im.size[0]) | |
277 self.assertEqual(358, im.size[1]) | |
278 | |
279 im = GetImage(_REMOTE, '/instances/%s/image-uint8' % i) | |
280 self.assertEqual("L", im.mode) | |
281 self.assertEqual(512, im.size[0]) | |
282 self.assertEqual(358, im.size[1]) | |
283 | |
284 im = GetImage(_REMOTE, '/instances/%s/image-uint16' % i) | |
285 self.assertEqual(512, im.size[0]) | |
286 self.assertEqual(358, im.size[1]) | |
287 | |
288 im = GetImage(_REMOTE, '/instances/%s/frames/0/preview' % i) | |
289 self.assertEqual("L", im.mode) | |
290 self.assertEqual(512, im.size[0]) | |
291 self.assertEqual(358, im.size[1]) | |
292 | |
293 im = GetImage(_REMOTE, '/instances/%s/frames/0/image-uint8' % i) | |
294 self.assertEqual("L", im.mode) | |
295 self.assertEqual(512, im.size[0]) | |
296 self.assertEqual(358, im.size[1]) | |
297 | |
298 im = GetImage(_REMOTE, '/instances/%s/frames/0/image-uint16' % i) | |
299 self.assertEqual(512, im.size[0]) | |
300 self.assertEqual(358, im.size[1]) | |
64 | 301 |
302 # This is Little Endian Explicit | |
303 self.assertEqual('1.2.840.10008.1.2.1', DoGet(_REMOTE, '/instances/%s/header?simplify' % i)['TransferSyntaxUID']) | |
304 | |
6 | 305 |
306 def test_hierarchy(self): | |
307 UploadFolder(_REMOTE, 'Brainix/Epi') | |
308 UploadFolder(_REMOTE, 'Brainix/Flair') | |
309 UploadFolder(_REMOTE, 'Knee/T1') | |
310 UploadFolder(_REMOTE, 'Knee/T2') | |
311 | |
312 p = DoGet(_REMOTE, '/patients') | |
313 s = DoGet(_REMOTE, '/studies') | |
314 t = DoGet(_REMOTE, '/series') | |
315 self.assertEqual(2, len(p)) | |
316 self.assertEqual(2, len(s)) | |
317 self.assertEqual(4, len(t)) | |
318 self.assertEqual(94, len(DoGet(_REMOTE, '/instances'))) | |
319 | |
320 brainixPatient = '16738bc3-e47ed42a-43ce044c-a3414a45-cb069bd0' | |
321 brainixStudy = '27f7126f-4f66fb14-03f4081b-f9341db2-53925988' | |
322 brainixEpi = '2ac1316d-3e432022-62eabff2-c59f5475-9b1ac3f8' | |
323 brainixFlair = '1e2c125c-411b8e86-3f4fe68e-a7584dd3-c6da78f0' | |
324 | |
325 kneePatient = 'ca29faea-b6a0e17f-067743a1-8b778011-a48b2a17' | |
326 kneeStudy = '0a9b3153-2512774b-2d9580de-1fc3dcf6-3bd83918' | |
327 kneeT1 = '6de73705-c4e65c1b-9d9ea1b5-cabcd8e7-f15e4285' | |
328 kneeT2 = 'bbf7a453-0d34251a-03663b55-46bb31b9-ffd74c59' | |
329 | |
330 self.assertTrue(brainixPatient in p) | |
331 self.assertTrue(kneePatient in p) | |
332 self.assertTrue(brainixStudy in s) | |
333 self.assertTrue(kneeStudy in s) | |
334 self.assertTrue(brainixEpi in t) | |
335 self.assertTrue(brainixFlair in t) | |
336 self.assertTrue(kneeT1 in t) | |
337 self.assertTrue(kneeT2 in t) | |
338 | |
339 self.assertEqual(44, len(DoGet(_REMOTE, '/patients/%s/instances' % brainixPatient))) | |
340 self.assertEqual(2, len(DoGet(_REMOTE, '/patients/%s/series' % brainixPatient))) | |
341 self.assertEqual(1, len(DoGet(_REMOTE, '/patients/%s/studies' % brainixPatient))) | |
342 | |
343 self.assertEqual(50, len(DoGet(_REMOTE, '/patients/%s/instances' % kneePatient))) | |
344 self.assertEqual(2, len(DoGet(_REMOTE, '/patients/%s/series' % kneePatient))) | |
345 self.assertEqual(1, len(DoGet(_REMOTE, '/patients/%s/studies' % kneePatient))) | |
346 | |
347 self.assertEqual(2, len(DoGet(_REMOTE, '/studies/%s/series' % brainixStudy))) | |
348 self.assertEqual(44, len(DoGet(_REMOTE, '/studies/%s/instances' % brainixStudy))) | |
349 | |
350 self.assertEqual(2, len(DoGet(_REMOTE, '/studies/%s/series' % kneeStudy))) | |
351 self.assertEqual(50, len(DoGet(_REMOTE, '/studies/%s/instances' % kneeStudy))) | |
352 | |
353 self.assertEqual(22, len(DoGet(_REMOTE, '/series/%s/instances' % brainixEpi))) | |
354 self.assertEqual(22, len(DoGet(_REMOTE, '/series/%s/instances' % brainixFlair))) | |
355 self.assertEqual(24, len(DoGet(_REMOTE, '/series/%s/instances' % kneeT1))) | |
356 self.assertEqual(26, len(DoGet(_REMOTE, '/series/%s/instances' % kneeT2))) | |
357 | |
358 for patient in p: | |
359 for study in DoGet(_REMOTE, '/patients/%s/studies' % patient): | |
360 self.assertEqual(patient, study['ParentPatient']) | |
361 for series in DoGet(_REMOTE, '/studies/%s/series' % study['ID']): | |
362 self.assertEqual(study['ID'], series['ParentStudy']) | |
211 | 363 self.assertEqual('Unknown', series['Status']) |
6 | 364 for instance in DoGet(_REMOTE, '/series/%s/instances' % series['ID']): |
365 self.assertEqual(series['ID'], instance['ParentSeries']) | |
366 | |
367 self.assertEqual(json.dumps(DoGet(_REMOTE, '/instances/%s/attachments/dicom-as-json/data' % instance['ID'])), | |
368 json.dumps(DoGet(_REMOTE, '/instances/%s/tags' % instance['ID']))) | |
369 | |
370 | |
371 r = DoDelete(_REMOTE, "/studies/%s" % brainixStudy)['RemainingAncestor'] | |
372 self.assertEqual(1, len(DoGet(_REMOTE, '/patients'))) | |
373 self.assertEqual(1, len(DoGet(_REMOTE, '/studies'))) | |
374 self.assertEqual(2, len(DoGet(_REMOTE, '/series'))) | |
375 self.assertEqual(50, len(DoGet(_REMOTE, '/instances'))) | |
376 self.assertEqual(None, r) | |
377 | |
378 r = DoDelete(_REMOTE, "/series/%s" % kneeT2)['RemainingAncestor'] | |
379 self.assertEqual(1, len(DoGet(_REMOTE, '/patients'))) | |
380 self.assertEqual(1, len(DoGet(_REMOTE, '/studies'))) | |
381 self.assertEqual(1, len(DoGet(_REMOTE, '/series'))) | |
382 self.assertEqual(24, len(DoGet(_REMOTE, '/instances'))) | |
383 self.assertEqual('Study', r['Type']) | |
384 self.assertEqual(kneeStudy, r['ID']) | |
385 | |
386 r = DoDelete(_REMOTE, "/instances/%s" % DoGet(_REMOTE, '/instances')[0])['RemainingAncestor'] | |
387 self.assertEqual(1, len(DoGet(_REMOTE, '/patients'))) | |
388 self.assertEqual(1, len(DoGet(_REMOTE, '/studies'))) | |
389 self.assertEqual(1, len(DoGet(_REMOTE, '/series'))) | |
390 self.assertEqual(23, len(DoGet(_REMOTE, '/instances'))) | |
391 self.assertEqual('Series', r['Type']) | |
392 self.assertEqual(kneeT1, r['ID']) | |
393 | |
394 r = DoDelete(_REMOTE, "/patients/%s" % kneePatient)['RemainingAncestor'] | |
395 self.assertEqual(0, len(DoGet(_REMOTE, '/patients'))) | |
396 self.assertEqual(0, len(DoGet(_REMOTE, '/studies'))) | |
397 self.assertEqual(0, len(DoGet(_REMOTE, '/series'))) | |
398 self.assertEqual(0, len(DoGet(_REMOTE, '/instances'))) | |
399 self.assertEqual(None, r) | |
400 | |
401 DropOrthanc(_REMOTE) | |
402 self.assertEqual('0', DoGet(_REMOTE, '/statistics')['TotalDiskSize']) | |
403 self.assertEqual('0', DoGet(_REMOTE, '/statistics')['TotalUncompressedSize']) | |
7 | 404 |
213
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405 def test_delete_cascade(self): |
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406 # make sure deleting the last instance of a study deletes the series, study and patient |
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407 |
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408 self.assertEqual(0, len(DoGet(_REMOTE, '/instances'))) # make sure orthanc is empty when starting the test |
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409 a = UploadInstance(_REMOTE, 'DummyCT.dcm')['ID'] |
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410 self.assertEqual(1, len(DoGet(_REMOTE, '/instances'))) |
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411 self.assertEqual(1, len(DoGet(_REMOTE, '/series'))) |
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412 self.assertEqual(1, len(DoGet(_REMOTE, '/studies'))) |
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413 self.assertEqual(1, len(DoGet(_REMOTE, '/patients'))) |
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414 |
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415 DoDelete(_REMOTE, '/instances/%s' % a) |
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416 |
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417 self.assertEqual(0, len(DoGet(_REMOTE, '/instances'))) |
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418 self.assertEqual(0, len(DoGet(_REMOTE, '/series'))) |
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419 self.assertEqual(0, len(DoGet(_REMOTE, '/studies'))) |
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420 self.assertEqual(0, len(DoGet(_REMOTE, '/patients'))) |
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421 |
7 | 422 |
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423 def test_multiframe(self): |
7 | 424 i = UploadInstance(_REMOTE, 'Multiframe.dcm')['ID'] |
425 self.assertEqual(76, len(DoGet(_REMOTE, '/instances/%s/frames' % i))) | |
426 | |
427 im = GetImage(_REMOTE, '/instances/%s/frames/0/preview' % i) | |
428 self.assertEqual("L", im.mode) | |
429 self.assertEqual(512, im.size[0]) | |
430 self.assertEqual(512, im.size[1]) | |
431 | |
432 DoGet(_REMOTE, '/instances/%s/frames/0/image-uint8' % i) | |
433 DoGet(_REMOTE, '/instances/%s/frames/0/image-uint16' % i) | |
434 DoGet(_REMOTE, '/instances/%s/frames/75/preview' % i) | |
435 self.assertRaises(Exception, lambda: DoGet(_REMOTE, '/instances/%s/frames/aaa/preview' % i)) | |
436 self.assertRaises(Exception, lambda: DoGet(_REMOTE, '/instances/%s/frames/76/preview' % i)) | |
437 | |
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438 |
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439 def test_changes(self): |
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440 # Check emptiness |
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441 c = DoGet(_REMOTE, '/changes') |
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442 self.assertEqual(0, len(c['Changes'])) |
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443 #self.assertEqual(0, c['Last']) # Not true anymore for Orthanc >= 1.5.2 |
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444 self.assertTrue(c['Done']) |
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445 c = DoGet(_REMOTE, '/changes?last') |
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446 self.assertEqual(0, len(c['Changes'])) |
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447 #self.assertEqual(0, c['Last']) # Not true anymore for Orthanc >= 1.5.2 |
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448 self.assertTrue(c['Done']) |
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449 |
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450 # Add 1 instance |
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451 i = UploadInstance(_REMOTE, 'Brainix/Flair/IM-0001-0001.dcm')['ID'] |
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452 c = DoGet(_REMOTE, '/changes') |
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453 begin = c['Last'] |
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454 self.assertEqual(4, len(c['Changes'])) |
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455 self.assertTrue(c['Done']) |
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456 self.assertEqual(c['Changes'][-1]['Seq'], c['Last']) |
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457 |
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458 c = DoGet(_REMOTE, '/changes?last') |
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459 self.assertEqual(1, len(c['Changes'])) |
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460 self.assertEqual(begin, c['Last']) |
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461 self.assertTrue(c['Done']) |
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462 c = DoGet(_REMOTE, '/changes?limit=1&since=' + str(begin - 1)) |
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463 self.assertEqual(1, len(c['Changes'])) |
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464 self.assertEqual(begin, c['Last']) |
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465 self.assertTrue(c['Done']) |
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466 c = DoGet(_REMOTE, '/changes?limit=1&since=' + str(begin - 2)) |
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467 self.assertEqual(1, len(c['Changes'])) |
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468 self.assertEqual(begin - 1, c['Last']) |
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469 self.assertFalse(c['Done']) |
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470 c = DoGet(_REMOTE, '/changes?limit=1&since=' + str(begin - 3)) |
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471 self.assertEqual(1, len(c['Changes'])) |
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472 self.assertEqual(begin - 2, c['Last']) |
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473 self.assertFalse(c['Done']) |
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474 |
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475 UploadFolder(_REMOTE, 'Knee/T1') |
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476 UploadFolder(_REMOTE, 'Knee/T2') |
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477 since = begin |
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478 countPatients = 0 |
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479 countStudies = 0 |
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480 countSeries = 0 |
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481 countInstances = 0 |
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482 completed = 0 |
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483 while True: |
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484 c = DoGet(_REMOTE, '/changes', { 'since' : since, 'limit' : 3 }) |
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485 since = c['Last'] |
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486 for i in c['Changes']: |
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487 if i['ResourceType'] == 'Instance': |
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488 countInstances += 1 |
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489 if i['ResourceType'] == 'Patient': |
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490 countPatients += 1 |
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491 if i['ResourceType'] == 'Study': |
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492 countStudies += 1 |
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493 if i['ResourceType'] == 'Series': |
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494 countSeries += 1 |
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495 if i['ChangeType'] == 'NewInstance': |
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496 countInstances += 1 |
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497 if i['ChangeType'] == 'NewPatient': |
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498 countPatients += 1 |
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499 if i['ChangeType'] == 'NewStudy': |
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500 countStudies += 1 |
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501 if i['ChangeType'] == 'NewSeries': |
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502 countSeries += 1 |
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503 if i['ChangeType'] == 'CompletedSeries': |
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504 completed += 1 |
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505 self.assertTrue('ID' in i) |
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506 self.assertTrue('Path' in i) |
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507 self.assertTrue('Seq' in i) |
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508 if c['Done']: |
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509 break |
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510 |
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511 self.assertEqual(2 * 50, countInstances) |
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512 self.assertEqual(2 * 1, countPatients) |
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513 self.assertEqual(2 * 1, countStudies) |
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514 self.assertEqual(2 * 2, countSeries) |
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515 self.assertEqual(0, completed) |
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516 |
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517 |
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518 def test_archive(self): |
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519 UploadInstance(_REMOTE, 'Knee/T1/IM-0001-0001.dcm') |
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520 UploadInstance(_REMOTE, 'Knee/T2/IM-0001-0001.dcm') |
192 | 521 knee = 'ca29faea-b6a0e17f-067743a1-8b778011-a48b2a17' |
522 | |
523 z = GetArchive(_REMOTE, '/patients/%s/archive' % knee) | |
8
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524 self.assertEqual(2, len(z.namelist())) |
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525 |
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526 z = GetArchive(_REMOTE, '/studies/%s/archive' % DoGet(_REMOTE, '/studies')[0]) |
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527 self.assertEqual(2, len(z.namelist())) |
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528 |
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529 z = GetArchive(_REMOTE, '/series/%s/archive' % DoGet(_REMOTE, '/series')[0]) |
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530 self.assertEqual(1, len(z.namelist())) |
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531 |
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532 UploadInstance(_REMOTE, 'Brainix/Flair/IM-0001-0001.dcm') |
192 | 533 brainix = '16738bc3-e47ed42a-43ce044c-a3414a45-cb069bd0' |
534 | |
535 z = GetArchive(_REMOTE, '/patients/%s/archive' % knee) | |
8
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536 self.assertEqual(2, len(z.namelist())) |
192 | 537 |
538 z = PostArchive(_REMOTE, '/tools/create-archive', { | |
539 'Resources' : [ brainix, knee ] | |
540 }) | |
541 self.assertEqual(3, len(z.namelist())) | |
542 | |
8
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543 |
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544 def test_media_archive(self): |
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545 UploadInstance(_REMOTE, 'Knee/T1/IM-0001-0001.dcm') |
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546 UploadInstance(_REMOTE, 'Knee/T2/IM-0001-0001.dcm') |
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547 |
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548 z = GetArchive(_REMOTE, '/patients/%s/media' % DoGet(_REMOTE, '/patients')[0]) |
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549 self.assertEqual(3, len(z.namelist())) |
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550 self.assertTrue('IMAGES/IM0' in z.namelist()) |
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551 self.assertTrue('IMAGES/IM1' in z.namelist()) |
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552 self.assertTrue('DICOMDIR' in z.namelist()) |
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553 |
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554 try: |
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555 os.remove('/tmp/DICOMDIR') |
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|
556 except: |
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557 # The file does not exist |
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558 pass |
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559 |
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560 z.extract('DICOMDIR', '/tmp') |
45 | 561 a = subprocess.check_output([ FindExecutable('dciodvfy'), '/tmp/DICOMDIR' ], |
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562 stderr = subprocess.STDOUT).split('\n') |
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563 self.assertEqual(3, len(a)) |
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564 self.assertTrue(a[0].startswith('Warning')) |
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565 self.assertEqual('BasicDirectory', a[1]) |
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566 self.assertEqual('', a[2]) |
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567 |
45 | 568 a = subprocess.check_output([ FindExecutable('dcentvfy'), '/tmp/DICOMDIR' ], |
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569 stderr = subprocess.STDOUT).split('\n') |
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570 self.assertEqual(1, len(a)) |
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571 self.assertEqual('', a[0]) |
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572 |
45 | 573 a = subprocess.check_output([ FindExecutable('dcm2xml'), '/tmp/DICOMDIR' ]) |
8
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574 self.assertTrue(re.search('1.3.46.670589.11.17521.5.0.3124.2008081908590448738', a) != None) |
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575 self.assertTrue(re.search('1.3.46.670589.11.17521.5.0.3124.2008081909113806560', a) != None) |
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576 |
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577 os.remove('/tmp/DICOMDIR') |
10 | 578 |
579 | |
580 def test_protection(self): | |
581 UploadInstance(_REMOTE, 'Knee/T1/IM-0001-0001.dcm') | |
582 UploadInstance(_REMOTE, 'Brainix/Flair/IM-0001-0001.dcm') | |
583 self.assertEqual(2, len(DoGet(_REMOTE, '/patients'))) | |
584 a = DoGet(_REMOTE, '/patients')[0] | |
585 b = DoGet(_REMOTE, '/patients')[1] | |
586 self.assertEqual(0, DoGet(_REMOTE, '/patients/%s/protected' % a)) | |
587 DoPut(_REMOTE, '/patients/%s/protected' % a, '0', 'text/plain') | |
588 self.assertEqual(0, DoGet(_REMOTE, '/patients/%s/protected' % a)) | |
589 DoPut(_REMOTE, '/patients/%s/protected' % a, '1', 'text/plain') | |
590 self.assertEqual(1, DoGet(_REMOTE, '/patients/%s/protected' % a)) | |
591 DoPut(_REMOTE, '/patients/%s/protected' % a, '0', 'text/plain') | |
592 self.assertEqual(0, DoGet(_REMOTE, '/patients/%s/protected' % a)) | |
593 | |
594 | |
12 | 595 def test_raw_tags(self): |
10 | 596 i = UploadInstance(_REMOTE, 'PrivateTags.dcm')['ID'] |
597 | |
598 dicom = DoGet(_REMOTE, '/instances/%s/file' % i) | |
599 self.assertEqual('1a7c56cb02d6e742cc9c856a8ac182e3', ComputeMD5(dicom)) | |
600 | |
601 s = '/instances/%s/content/' % i | |
602 | |
603 self.assertEqual('LOGIQBOOK', DoGet(_REMOTE, s + '0008-1010').strip()) | |
604 self.assertRaises(Exception, lambda: DoGet(_REMOTE, s + '0008-1011')) | |
605 | |
606 self.assertEqual('Abdomen', DoGet(_REMOTE, s + '7fe1-1001/0/7fe1-1008/0/7fe1-1057').strip()) | |
607 self.assertEqual('cla_3c', DoGet(_REMOTE, s + '7fe1-1001/0/7fe1-1008/8/7fe1-1057').strip()) | |
608 | |
609 UploadInstance(_REMOTE, 'Brainix/Epi/IM-0001-0001.dcm') | |
610 UploadInstance(_REMOTE, 'Brainix/Flair/IM-0001-0001.dcm') | |
611 UploadInstance(_REMOTE, 'Knee/T1/IM-0001-0001.dcm') | |
612 UploadInstance(_REMOTE, 'Knee/T2/IM-0001-0001.dcm') | |
613 | |
614 for i in DoGet(_REMOTE, '/instances'): | |
615 aid = DoGet(_REMOTE, '/instances/%s' % i)['MainDicomTags']['SOPInstanceUID'] | |
616 self.assertEqual(aid, DoGet(_REMOTE, '/instances/%s/content/0008-0018' % i).replace(chr(0), '')) | |
617 | |
618 | |
619 def test_raw_tags_mdn(self): | |
620 # Bug reported by Cyril Paulus | |
621 i = UploadInstance(_REMOTE, 'PrivateMDNTags.dcm')['ID'] | |
622 self.assertAlmostEqual(0.000027, DoGet(_REMOTE, '/instances/%s/content/7053-1000' % i)) | |
623 | |
624 | |
625 def test_modify_instance(self): | |
626 i = UploadInstance(_REMOTE, 'PrivateTags.dcm')['ID'] | |
627 modified = DoPost(_REMOTE, '/instances/%s/modify' % i, | |
628 json.dumps({ | |
629 "Replace" : { | |
630 "PatientName" : "hello", | |
631 #"PatientID" : "world" | |
632 }, | |
633 "Remove" : [ "StationName" ], | |
118
a954c535fef6
test_bitbucket_issue_55
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
117
diff
changeset
|
634 "RemovePrivateTags" : True |
10 | 635 }), |
636 'application/json') | |
637 j = DoPost(_REMOTE, '/instances', modified, 'application/dicom')['ID'] | |
638 | |
639 self.assertNotEqual('hello', DoGet(_REMOTE, '/instances/%s/content/0010-0010' % i).strip()) | |
640 #self.assertNotEqual('world', DoGet(_REMOTE, '/instances/%s/content/0010-0020' % i).strip()) | |
83 | 641 self.assertEqual('LOGIQBOOK', DoGet(_REMOTE, '/instances/%s/content/0008-1010' % i).strip()) |
10 | 642 DoGet(_REMOTE, '/instances/%s/content/6003-1010' % i) # Some private tag |
643 | |
644 self.assertEqual('hello', DoGet(_REMOTE, '/instances/%s/content/0010-0010' % j).strip()) | |
645 #self.assertEqual('world', DoGet(_REMOTE, '/instances/%s/content/0010-0020' % j).strip()) | |
646 self.assertRaises(Exception, lambda: DoGet(_REMOTE, '/instances/%s/content/0008-1010' % j)) | |
647 self.assertRaises(Exception, lambda: DoGet(_REMOTE, '/instances/%s/content/6003-1010' % j)) | |
648 | |
649 | |
650 def test_modify_series(self): | |
651 # Upload 4 images from the same series | |
652 for i in range(4): | |
653 UploadInstance(_REMOTE, 'Brainix/Epi/IM-0001-000%d.dcm' % (i + 1)) | |
654 | |
655 origSeries = DoGet(_REMOTE, '/series')[0] | |
656 newSeries = DoPost(_REMOTE, '/series/%s/modify' % origSeries, | |
657 '{"Replace":{"PatientName":"Jodogne"}}', | |
658 'application/json')['ID'] | |
659 | |
660 self.assertEqual(origSeries, DoGet(_REMOTE, '/series/%s' % newSeries)['ModifiedFrom']) | |
661 instances = DoGet(_REMOTE, '/series/%s' % newSeries)['Instances'] | |
662 self.assertEqual(4, len(instances)) | |
663 for i in instances: | |
664 j = DoGet(_REMOTE, '/instances/%s' % i)['ModifiedFrom'] | |
665 self.assertEqual(newSeries, DoGet(_REMOTE, '/instances/%s' % i)['ParentSeries']) | |
666 self.assertEqual(origSeries, DoGet(_REMOTE, '/instances/%s' % j)['ParentSeries']) | |
667 | |
668 self.assertEqual('Jodogne', DoGet(_REMOTE, '/instances/%s/content/0010-0010' % i).strip()) | |
669 self.assertNotEqual('Jodogne', DoGet(_REMOTE, '/instances/%s/content/0010-0010' % j).strip()) | |
670 | |
671 | |
672 def test_modify_study(self): | |
673 # Upload 4 images from the 2 series of the same study | |
674 for i in range(4): | |
675 UploadInstance(_REMOTE, 'Brainix/Flair/IM-0001-000%d.dcm' % (i + 1)) | |
676 UploadInstance(_REMOTE, 'Brainix/Epi/IM-0001-000%d.dcm' % (i + 1)) | |
677 | |
678 origStudy = DoGet(_REMOTE, '/studies')[0] | |
679 newStudy = DoPost(_REMOTE, '/studies/%s/modify' % origStudy, | |
680 '{"Replace":{"PatientName":"Jodogne"}}', | |
681 'application/json')['ID'] | |
682 | |
683 self.assertEqual(origStudy, DoGet(_REMOTE, '/studies/%s' % newStudy)['ModifiedFrom']) | |
684 series = DoGet(_REMOTE, '/studies/%s' % newStudy)['Series'] | |
685 self.assertEqual(2, len(series)) | |
686 for s in series: | |
687 ss = DoGet(_REMOTE, '/series/%s' % s)['ModifiedFrom'] | |
688 self.assertEqual(newStudy, DoGet(_REMOTE, '/series/%s' % s)['ParentStudy']) | |
689 self.assertEqual(origStudy, DoGet(_REMOTE, '/series/%s' % ss)['ParentStudy']) | |
690 | |
691 instances = DoGet(_REMOTE, '/series/%s' % s)['Instances'] | |
692 for i in instances: | |
693 j = DoGet(_REMOTE, '/instances/%s' % i)['ModifiedFrom'] | |
694 self.assertEqual(s, DoGet(_REMOTE, '/instances/%s' % i)['ParentSeries']) | |
695 self.assertEqual(ss, DoGet(_REMOTE, '/instances/%s' % j)['ParentSeries']) | |
696 | |
697 self.assertEqual('Jodogne', DoGet(_REMOTE, '/instances/%s/content/0010-0010' % i).strip()) | |
698 self.assertNotEqual('Jodogne', DoGet(_REMOTE, '/instances/%s/content/0010-0010' % j).strip()) | |
699 | |
700 | |
701 def test_anonymize_series(self): | |
702 # Upload 4 images from the same series | |
703 for i in range(4): | |
704 UploadInstance(_REMOTE, 'Brainix/Epi/IM-0001-000%d.dcm' % (i + 1)) | |
705 | |
706 origSeries = DoGet(_REMOTE, '/series')[0] | |
707 newSeries = DoPost(_REMOTE, '/series/%s/anonymize' % origSeries, | |
708 '{}', | |
709 'application/json')['ID'] | |
710 | |
711 self.assertEqual(origSeries, DoGet(_REMOTE, '/series/%s' % newSeries)['AnonymizedFrom']) | |
712 instances = DoGet(_REMOTE, '/series/%s' % newSeries)['Instances'] | |
713 self.assertEqual(4, len(instances)) | |
714 for i in instances: | |
715 j = DoGet(_REMOTE, '/instances/%s' % i)['AnonymizedFrom'] | |
716 self.assertEqual(newSeries, DoGet(_REMOTE, '/instances/%s' % i)['ParentSeries']) | |
717 self.assertEqual(origSeries, DoGet(_REMOTE, '/instances/%s' % j)['ParentSeries']) | |
718 | |
719 DoGet(_REMOTE, '/instances/%s/content/0008-1010' % j) | |
720 self.assertRaises(Exception, lambda: DoGet(_REMOTE, '/instances/%s/content/0008-1010' % i)) | |
721 | |
722 | |
723 def test_anonymize_study(self): | |
724 # Upload 4 images from the 2 series of the same study | |
725 for i in range(4): | |
726 UploadInstance(_REMOTE, 'Brainix/Flair/IM-0001-000%d.dcm' % (i + 1)) | |
727 UploadInstance(_REMOTE, 'Brainix/Epi/IM-0001-000%d.dcm' % (i + 1)) | |
728 | |
729 origStudy = DoGet(_REMOTE, '/studies')[0] | |
730 newStudy = DoPost(_REMOTE,'/studies/%s/anonymize' % origStudy, | |
731 '{"Replace":{"PatientName":"Jodogne"}}', | |
732 'application/json')['ID'] | |
733 | |
734 self.assertEqual(origStudy, DoGet(_REMOTE, '/studies/%s' % newStudy)['AnonymizedFrom']) | |
735 series = DoGet(_REMOTE, '/studies/%s' % newStudy)['Series'] | |
736 self.assertEqual(2, len(series)) | |
737 for s in series: | |
738 ss = DoGet(_REMOTE, '/series/%s' % s)['AnonymizedFrom'] | |
739 self.assertEqual(newStudy, DoGet(_REMOTE, '/series/%s' % s)['ParentStudy']) | |
740 self.assertEqual(origStudy, DoGet(_REMOTE, '/series/%s' % ss)['ParentStudy']) | |
741 | |
742 instances = DoGet(_REMOTE, '/series/%s' % s)['Instances'] | |
743 for i in instances: | |
744 j = DoGet(_REMOTE, '/instances/%s' % i)['AnonymizedFrom'] | |
745 self.assertEqual(s, DoGet(_REMOTE, '/instances/%s' % i)['ParentSeries']) | |
746 self.assertEqual(ss, DoGet(_REMOTE, '/instances/%s' % j)['ParentSeries']) | |
747 | |
748 self.assertEqual('Jodogne', DoGet(_REMOTE, '/instances/%s/content/0010-0010' % i).strip()) | |
749 self.assertNotEqual('Jodogne', DoGet(_REMOTE, '/instances/%s/content/0010-0010' % j).strip()) | |
11 | 750 |
751 | |
752 | |
753 def test_storescu(self): | |
754 # Check emptiness | |
755 e = DoGet(_REMOTE, '/exports') | |
756 self.assertEqual(0, len(e['Exports'])) | |
757 self.assertEqual(0, e['Last']) | |
758 self.assertTrue(e['Done']) | |
759 e = DoGet(_REMOTE, '/exports?last') | |
760 self.assertEqual(0, len(e['Exports'])) | |
761 self.assertEqual(0, e['Last']) | |
762 self.assertTrue(e['Done']) | |
763 | |
764 # Add 1 instance | |
765 i = UploadInstance(_REMOTE, 'DummyCT.dcm')['ID'] | |
766 self.assertEqual(0, len(DoGet(_LOCAL, '/patients'))) | |
767 | |
768 # Export the instance | |
769 j = DoPost(_REMOTE, '/modalities/orthanctest/store', str(i), 'text/plain') # instance | |
770 self.assertEqual(1, len(DoGet(_LOCAL, '/patients'))) | |
771 self.assertEqual(1, len(DoGet(_LOCAL, '/studies'))) | |
772 self.assertEqual(1, len(DoGet(_LOCAL, '/series'))) | |
773 self.assertEqual(1, len(DoGet(_LOCAL, '/instances'))) | |
774 | |
775 e = DoGet(_REMOTE, '/exports') | |
776 self.assertEqual(1, len(e['Exports'])) | |
777 self.assertTrue(e['Done']) | |
778 self.assertEqual(e['Exports'][-1]['Seq'], e['Last']) | |
779 e = DoGet(_REMOTE, '/exports?limit=1') | |
780 self.assertEqual(1, len(e['Exports'])) | |
781 self.assertTrue(e['Done']) | |
782 self.assertEqual(e['Exports'][-1]['Seq'], e['Last']) | |
783 e = DoGet(_REMOTE, '/exports?last') | |
784 self.assertEqual(1, len(e['Exports'])) | |
785 self.assertTrue(e['Done']) | |
786 self.assertEqual(e['Exports'][-1]['Seq'], e['Last']) | |
787 seqInstance = e['Last'] | |
788 | |
789 # Export the series | |
790 j = DoPost(_REMOTE, '/modalities/orthanctest/store', 'f2635388-f01d497a-15f7c06b-ad7dba06-c4c599fe', 'text/plain') | |
791 | |
792 e = DoGet(_REMOTE, '/exports') | |
793 self.assertEqual(2, len(e['Exports'])) | |
794 self.assertTrue(e['Done']) | |
795 self.assertEqual(e['Exports'][-1]['Seq'], e['Last']) | |
796 seqSeries = e['Last'] | |
797 self.assertNotEqual(seqInstance, seqSeries) | |
798 e = DoGet(_REMOTE, '/exports?limit=1&since=0') | |
799 self.assertEqual(1, len(e['Exports'])) | |
800 self.assertFalse(e['Done']) | |
801 self.assertEqual(e['Exports'][-1]['Seq'], seqInstance) | |
802 e = DoGet(_REMOTE, '/exports?limit=1&since=' + str(seqInstance)) | |
803 self.assertEqual(1, len(e['Exports'])) | |
804 self.assertTrue(e['Done']) | |
805 self.assertEqual(e['Exports'][-1]['Seq'], seqSeries) | |
806 e = DoGet(_REMOTE, '/exports?last') | |
807 self.assertEqual(1, len(e['Exports'])) | |
808 self.assertTrue(e['Done']) | |
809 self.assertEqual(e['Exports'][-1]['Seq'], seqSeries) | |
810 | |
811 # Export the study | |
812 j = DoPost(_REMOTE, '/modalities/orthanctest/store', 'b9c08539-26f93bde-c81ab0d7-bffaf2cb-a4d0bdd0', 'text/plain') | |
813 seqStudy = DoGet(_REMOTE, '/exports')['Last'] | |
814 | |
815 # Export the patient | |
816 j = DoPost(_REMOTE, '/modalities/orthanctest/store', '6816cb19-844d5aee-85245eba-28e841e6-2414fae2', 'text/plain') | |
817 self.assertEqual(1, len(DoGet(_LOCAL, '/patients'))) | |
818 self.assertEqual(1, len(DoGet(_LOCAL, '/studies'))) | |
819 self.assertEqual(1, len(DoGet(_LOCAL, '/series'))) | |
820 self.assertEqual(1, len(DoGet(_LOCAL, '/instances'))) | |
821 | |
822 e = DoGet(_REMOTE, '/exports') | |
823 self.assertEqual(4, len(e['Exports'])) | |
824 self.assertTrue(e['Done']) | |
825 self.assertEqual(e['Exports'][-1]['Seq'], e['Last']) | |
826 seqPatient = e['Last'] | |
827 self.assertNotEqual(seqInstance, seqSeries) | |
828 self.assertNotEqual(seqSeries, seqStudy) | |
829 self.assertNotEqual(seqStudy, seqPatient) | |
830 self.assertTrue(seqInstance < seqSeries) | |
831 self.assertTrue(seqSeries < seqStudy) | |
832 self.assertTrue(seqStudy < seqPatient) | |
833 e = DoGet(_REMOTE, '/exports?limit=1&since=0') | |
834 self.assertEqual(1, len(e['Exports'])) | |
835 self.assertFalse(e['Done']) | |
836 self.assertEqual(e['Exports'][-1]['Seq'], seqInstance) | |
837 e = DoGet(_REMOTE, '/exports?limit=1&since=' + str(seqInstance)) | |
838 self.assertEqual(1, len(e['Exports'])) | |
839 self.assertFalse(e['Done']) | |
840 self.assertEqual(e['Exports'][-1]['Seq'], seqSeries) | |
841 e = DoGet(_REMOTE, '/exports?limit=1&since=' + str(seqSeries)) | |
842 self.assertEqual(1, len(e['Exports'])) | |
843 self.assertFalse(e['Done']) | |
844 self.assertEqual(e['Exports'][-1]['Seq'], seqStudy) | |
845 e = DoGet(_REMOTE, '/exports?limit=1&since=' + str(seqStudy)) | |
846 self.assertEqual(1, len(e['Exports'])) | |
847 self.assertTrue(e['Done']) | |
848 self.assertEqual(e['Exports'][-1]['Seq'], seqPatient) | |
849 e = DoGet(_REMOTE, '/exports?last') | |
850 self.assertEqual(1, len(e['Exports'])) | |
851 self.assertTrue(e['Done']) | |
852 self.assertEqual(e['Exports'][-1]['Seq'], seqPatient) | |
853 | |
854 | |
855 # Check the content of the logged information | |
856 e = DoGet(_REMOTE, '/exports')['Exports'] | |
857 | |
858 if 'PatientID' in e[0]: | |
859 # Since Orthanc 0.8.6 | |
860 patient = 'PatientID' | |
861 study = 'StudyInstanceUID' | |
862 series = 'SeriesInstanceUID' | |
863 instance = 'SOPInstanceUID' | |
864 else: | |
865 # Up to Orthanc 0.8.5 | |
866 patient = 'PatientId' | |
867 study = 'StudyInstanceUid' | |
868 series = 'SeriesInstanceUid' | |
869 instance = 'SopInstanceUid' | |
870 | |
871 for k in range(4): | |
872 self.assertTrue('Date' in e[k]) | |
873 self.assertTrue('Seq' in e[k]) | |
874 self.assertEqual('orthanctest', e[k]['RemoteModality']) | |
875 | |
876 self.assertEqual(10, len(e[0])) | |
877 self.assertEqual('Instance', e[0]['ResourceType']) | |
878 self.assertEqual('66a662ce-7430e543-bad44d47-0dc5a943-ec7a538d', e[0]['ID']) | |
879 self.assertEqual('/instances/66a662ce-7430e543-bad44d47-0dc5a943-ec7a538d', e[0]['Path']) | |
880 self.assertEqual('1.2.840.113619.2.176.2025.1499492.7040.1171286242.109', e[0][instance]) | |
881 self.assertEqual('1.2.840.113619.2.176.2025.1499492.7391.1171285944.394', e[0][series]) | |
882 self.assertEqual('1.2.840.113619.2.176.2025.1499492.7391.1171285944.390', e[0][study]) | |
883 self.assertEqual('ozp00SjY2xG', e[0][patient]) | |
884 | |
885 self.assertEqual(9, len(e[1])) | |
886 self.assertEqual('Series', e[1]['ResourceType']) | |
887 self.assertEqual('f2635388-f01d497a-15f7c06b-ad7dba06-c4c599fe', e[1]['ID']) | |
888 self.assertEqual('/series/f2635388-f01d497a-15f7c06b-ad7dba06-c4c599fe', e[1]['Path']) | |
889 self.assertEqual('1.2.840.113619.2.176.2025.1499492.7391.1171285944.394', e[1][series]) | |
890 self.assertEqual('1.2.840.113619.2.176.2025.1499492.7391.1171285944.390', e[1][study]) | |
891 self.assertEqual('ozp00SjY2xG', e[1][patient]) | |
892 | |
893 self.assertEqual(8, len(e[2])) | |
894 self.assertEqual('Study', e[2]['ResourceType']) | |
895 self.assertEqual('b9c08539-26f93bde-c81ab0d7-bffaf2cb-a4d0bdd0', e[2]['ID']) | |
896 self.assertEqual('/studies/b9c08539-26f93bde-c81ab0d7-bffaf2cb-a4d0bdd0', e[2]['Path']) | |
897 self.assertEqual('1.2.840.113619.2.176.2025.1499492.7391.1171285944.390', e[2][study]) | |
898 self.assertEqual('ozp00SjY2xG', e[2][patient]) | |
899 | |
900 self.assertEqual(7, len(e[3])) | |
901 self.assertEqual('Patient', e[3]['ResourceType']) | |
902 self.assertEqual('6816cb19-844d5aee-85245eba-28e841e6-2414fae2', e[3]['ID']) | |
903 self.assertEqual('/patients/6816cb19-844d5aee-85245eba-28e841e6-2414fae2', e[3]['Path']) | |
904 self.assertEqual('ozp00SjY2xG', e[3][patient]) | |
905 | |
906 DropOrthanc(_REMOTE) | |
907 self.assertEqual(0, len(DoGet(_REMOTE, '/exports')['Exports'])) | |
908 | |
909 | |
910 def test_store_peer(self): | |
911 self.assertEqual(0, len(DoGet(_LOCAL, '/exports')['Exports'])) | |
912 self.assertEqual(0, len(DoGet(_REMOTE, '/exports')['Exports'])) | |
913 | |
914 i = UploadInstance(_REMOTE, 'DummyCT.dcm')['ID'] | |
915 self.assertEqual(0, len(DoGet(_LOCAL, '/patients'))) | |
916 self.assertEqual(1, len(DoGet(_REMOTE, '/patients'))) | |
917 | |
918 j = DoPost(_REMOTE, '/peers/peer/store', str(i), 'text/plain') | |
919 self.assertEqual(1, len(DoGet(_LOCAL, '/patients'))) | |
920 self.assertEqual(1, len(DoGet(_REMOTE, '/patients'))) | |
921 | |
922 self.assertEqual(1, len(DoGet(_REMOTE, '/exports')['Exports'])) | |
923 | |
924 DropOrthanc(_REMOTE) | |
925 self.assertEqual(0, len(DoGet(_REMOTE, '/exports')['Exports'])) | |
926 | |
927 | |
928 def test_bulk_storescu(self): | |
929 self.assertEqual(0, len(DoGet(_LOCAL, '/patients'))) | |
930 | |
931 a = UploadInstance(_REMOTE, 'Knee/T1/IM-0001-0001.dcm') | |
932 b = UploadInstance(_REMOTE, 'Knee/T2/IM-0001-0001.dcm') | |
933 | |
934 j = DoPost(_REMOTE, '/modalities/orthanctest/store', [ a['ID'], b['ID'] ], 'application/json') | |
935 self.assertEqual(2, len(DoGet(_LOCAL, '/instances'))) | |
936 | |
937 DropOrthanc(_LOCAL) | |
938 | |
939 # Send using patient's UUID | |
940 self.assertEqual(0, len(DoGet(_LOCAL, '/instances'))) | |
941 j = DoPost(_REMOTE, '/modalities/orthanctest/store', | |
942 [ 'ca29faea-b6a0e17f-067743a1-8b778011-a48b2a17' ], 'application/json') | |
943 self.assertEqual(2, len(DoGet(_LOCAL, '/instances'))) | |
944 | |
945 | |
946 def test_color(self): | |
947 i = UploadInstance(_REMOTE, 'ColorTestMalaterre.dcm')['ID'] | |
948 im = GetImage(_REMOTE, '/instances/%s/preview' % i) | |
949 self.assertEqual("RGB", im.mode) | |
950 self.assertEqual(41, im.size[0]) | |
951 self.assertEqual(41, im.size[1]) | |
952 | |
953 # http://effbot.org/zone/pil-comparing-images.htm | |
13 | 954 truth = Image.open(GetDatabasePath('ColorTestMalaterre.png')) |
11 | 955 self.assertTrue(ImageChops.difference(im, truth).getbbox() is None) |
956 | |
957 | |
12 | 958 def test_faking_ruby_put(self): |
959 UploadInstance(_REMOTE, 'Knee/T1/IM-0001-0001.dcm') | |
960 UploadInstance(_REMOTE, 'Brainix/Flair/IM-0001-0001.dcm') | |
961 self.assertEqual(2, len(DoGet(_REMOTE, '/patients'))) | |
962 a = DoGet(_REMOTE, '/patients')[0] | |
963 b = DoGet(_REMOTE, '/patients')[1] | |
964 self.assertEqual(0, DoGet(_REMOTE, '/patients/%s/protected' % a)) | |
965 DoGet(_REMOTE, '/patients/%s/protected' % a, data = { '_method' : 'PUT' }, body = '0') | |
966 self.assertEqual(0, DoGet(_REMOTE, '/patients/%s/protected' % a)) | |
967 DoGet(_REMOTE, '/patients/%s/protected' % a, data = { '_method' : 'PUT' }, body = '1') | |
968 self.assertEqual(1, DoGet(_REMOTE, '/patients/%s/protected' % a)) | |
969 DoGet(_REMOTE, '/patients/%s/protected' % a, data = { '_method' : 'PUT' }, body = '0') | |
970 self.assertEqual(0, DoGet(_REMOTE, '/patients/%s/protected' % a)) | |
971 | |
972 | |
973 def test_faking_ruby_delete(self): | |
974 UploadInstance(_REMOTE, 'Knee/T1/IM-0001-0001.dcm') | |
975 UploadInstance(_REMOTE, 'Brainix/Flair/IM-0001-0001.dcm') | |
976 self.assertEqual(2, len(DoGet(_REMOTE, '/patients'))) | |
977 a = DoGet(_REMOTE, '/patients')[0] | |
978 b = DoGet(_REMOTE, '/patients')[1] | |
979 DoGet(_REMOTE, '/patients/%s' % a, data = { '_method' : 'DELETE' }) | |
980 self.assertEqual(1, len(DoGet(_REMOTE, '/patients'))) | |
981 DoGet(_REMOTE, '/patients/%s' % b, data = { '_method' : 'DELETE' }) | |
982 self.assertEqual(0, len(DoGet(_REMOTE, '/patients'))) | |
983 | |
984 | |
985 def test_faking_google_put(self): | |
986 UploadInstance(_REMOTE, 'Knee/T1/IM-0001-0001.dcm') | |
987 UploadInstance(_REMOTE, 'Brainix/Flair/IM-0001-0001.dcm') | |
988 self.assertEqual(2, len(DoGet(_REMOTE, '/patients'))) | |
989 a = DoGet(_REMOTE, '/patients')[0] | |
990 b = DoGet(_REMOTE, '/patients')[1] | |
991 self.assertEqual(0, DoGet(_REMOTE, '/patients/%s/protected' % a)) | |
992 DoPost(_REMOTE, '/patients/%s/protected' % a, headers = { 'X-HTTP-Method-Override' : 'PUT' }, data = '0') | |
993 self.assertEqual(0, DoGet(_REMOTE, '/patients/%s/protected' % a)) | |
994 DoPost(_REMOTE, '/patients/%s/protected' % a, headers = { 'X-HTTP-Method-Override' : 'PUT' }, data = '1') | |
995 self.assertEqual(1, DoGet(_REMOTE, '/patients/%s/protected' % a)) | |
996 DoPost(_REMOTE, '/patients/%s/protected' % a, headers = { 'X-HTTP-Method-Override' : 'PUT' }, data = '0') | |
997 self.assertEqual(0, DoGet(_REMOTE, '/patients/%s/protected' % a)) | |
998 | |
999 | |
1000 def test_faking_google_delete(self): | |
1001 UploadInstance(_REMOTE, 'Knee/T1/IM-0001-0001.dcm') | |
1002 UploadInstance(_REMOTE, 'Brainix/Flair/IM-0001-0001.dcm') | |
1003 self.assertEqual(2, len(DoGet(_REMOTE, '/patients'))) | |
1004 a = DoGet(_REMOTE, '/patients')[0] | |
1005 b = DoGet(_REMOTE, '/patients')[1] | |
1006 DoPost(_REMOTE, '/patients/%s' % a, headers = { 'X-HTTP-Method-Override' : 'DELETE' }) | |
1007 self.assertEqual(1, len(DoGet(_REMOTE, '/patients'))) | |
1008 DoPost(_REMOTE, '/patients/%s' % b, headers = { 'X-HTTP-Method-Override' : 'DELETE' }) | |
1009 self.assertEqual(0, len(DoGet(_REMOTE, '/patients'))) | |
1010 | |
1011 | |
1012 def test_lua(self): | |
1013 self.assertEqual(42, DoPost(_REMOTE, '/tools/execute-script', 'print(42)')) | |
1014 self.assertTrue(IsDefinedInLua(_REMOTE, 'PrintRecursive')) | |
1015 self.assertFalse(IsDefinedInLua(_REMOTE, 'HelloWorld')) | |
1016 | |
1017 | |
1018 def test_metadata(self): | |
1019 UploadInstance(_REMOTE, 'Knee/T1/IM-0001-0001.dcm') | |
1020 p = DoGet(_REMOTE, '/patients')[0] | |
1021 i = DoGet(_REMOTE, '/instances')[0] | |
1022 | |
1023 m = DoGet(_REMOTE, '/patients/%s/metadata' % p) | |
1024 self.assertEqual(1, len(m)) | |
1025 self.assertEqual('LastUpdate', m[0]) | |
1026 | |
1027 m = DoGet(_REMOTE, '/instances/%s/metadata' % i) | |
145 | 1028 self.assertEqual(8, len(m)) |
12 | 1029 self.assertTrue('IndexInSeries' in m) |
1030 self.assertTrue('ReceptionDate' in m) | |
1031 self.assertTrue('RemoteAET' in m) | |
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1032 self.assertTrue('Origin' in m) |
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1033 self.assertTrue('TransferSyntax' in m) |
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1034 self.assertTrue('SopClassUid' in m) |
145 | 1035 self.assertTrue('RemoteIP' in m) |
1036 self.assertTrue('HttpUsername' in m) | |
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1037 self.assertEqual(DoGet(_REMOTE, '/instances/%s/metadata/IndexInSeries' % i), 1) |
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1038 self.assertEqual(DoGet(_REMOTE, '/instances/%s/metadata/Origin' % i), 'RestApi') |
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1039 self.assertEqual(DoGet(_REMOTE, '/instances/%s/metadata/RemoteAET' % i), '') # None, received by REST API |
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1040 self.assertEqual(DoGet(_REMOTE, '/instances/%s/metadata/TransferSyntax' % i), '1.2.840.10008.1.2.4.91') # JPEG2k |
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1041 self.assertEqual(DoGet(_REMOTE, '/instances/%s/metadata/SopClassUid' % i), '1.2.840.10008.5.1.4.1.1.4') |
12 | 1042 |
1043 # Play with custom metadata | |
1044 DoPut(_REMOTE, '/patients/%s/metadata/5555' % p, 'coucou') | |
1045 m = DoGet(_REMOTE, '/patients/%s/metadata' % p) | |
1046 self.assertEqual(2, len(m)) | |
1047 self.assertTrue('LastUpdate' in m) | |
1048 self.assertTrue('5555' in m) | |
1049 self.assertEqual('coucou', DoGet(_REMOTE, '/patients/%s/metadata/5555' % p)) | |
1050 DoPut(_REMOTE, '/patients/%s/metadata/5555' % p, 'hello') | |
1051 self.assertEqual('hello', DoGet(_REMOTE, '/patients/%s/metadata/5555' % p)) | |
1052 DoDelete(_REMOTE, '/patients/%s/metadata/5555' % p) | |
1053 m = DoGet(_REMOTE, '/patients/%s/metadata' % p) | |
1054 self.assertEqual(1, len(m)) | |
1055 self.assertTrue('LastUpdate' in m) | |
13 | 1056 |
1057 | |
1058 def test_statistics(self): | |
1059 # Upload 16 instances | |
1060 for i in range(4): | |
1061 UploadInstance(_REMOTE, 'Brainix/Flair/IM-0001-000%d.dcm' % (i + 1)) | |
1062 UploadInstance(_REMOTE, 'Brainix/Epi/IM-0001-000%d.dcm' % (i + 1)) | |
1063 UploadInstance(_REMOTE, 'Knee/T1/IM-0001-000%d.dcm' % (i + 1)) | |
1064 UploadInstance(_REMOTE, 'Knee/T2/IM-0001-000%d.dcm' % (i + 1)) | |
1065 | |
1066 s = DoGet(_REMOTE, '/statistics') | |
1067 self.assertEqual(16, s['CountInstances']) | |
1068 self.assertEqual(2, s['CountPatients']) | |
1069 self.assertEqual(2, s['CountStudies']) | |
1070 self.assertEqual(4, s['CountSeries']) | |
1071 d = int(s['TotalUncompressedSize']) | |
1072 | |
1073 e = 0 | |
1074 for patient in DoGet(_REMOTE, '/patients'): | |
1075 s = DoGet(_REMOTE, '/patients/%s/statistics' % patient) | |
1076 self.assertEqual(8, s['CountInstances']) | |
1077 self.assertEqual(1, s['CountStudies']) | |
1078 self.assertEqual(2, s['CountSeries']) | |
1079 e += int(s['UncompressedSize']) | |
1080 | |
1081 for study in DoGet(_REMOTE, '/studies'): | |
1082 s = DoGet(_REMOTE, '/studies/%s/statistics' % study) | |
1083 self.assertEqual(8, s['CountInstances']) | |
1084 self.assertEqual(2, s['CountSeries']) | |
1085 e += int(s['UncompressedSize']) | |
1086 | |
1087 for series in DoGet(_REMOTE, '/series'): | |
1088 s = DoGet(_REMOTE, '/series/%s/statistics' % series) | |
1089 self.assertEqual(4, s['CountInstances']) | |
1090 e += int(s['UncompressedSize']) | |
1091 | |
1092 self.assertEqual(3 * d, e) | |
1093 | |
1094 | |
1095 def test_custom_attachment(self): | |
1096 UploadInstance(_REMOTE, 'Brainix/Flair/IM-0001-0001.dcm') | |
1097 patient = DoGet(_REMOTE, '/patients')[0] | |
1098 instance = DoGet(_REMOTE, '/instances')[0] | |
1099 size = int(DoGet(_REMOTE, '/patients/%s/statistics' % patient)['DiskSize']) | |
1100 self.assertEqual(size, int(DoGet(_REMOTE, '/statistics')['TotalDiskSize'])) | |
1101 | |
1102 self.assertEqual(0, len(DoGet(_REMOTE, '/patients/%s/attachments' % patient))) | |
1103 self.assertEqual(2, len(DoGet(_REMOTE, '/instances/%s/attachments' % instance))) | |
1104 self.assertTrue('dicom' in DoGet(_REMOTE, '/instances/%s/attachments' % instance)) | |
1105 self.assertTrue('dicom-as-json' in DoGet(_REMOTE, '/instances/%s/attachments' % instance)) | |
1106 | |
1107 self.assertRaises(Exception, lambda: DoPut(_REMOTE, '/patients/%s/attachments/22' % patient, 'hello')) | |
1108 hello = 'hellohellohellohellohellohellohellohellohello' | |
1109 DoPut(_REMOTE, '/patients/%s/attachments/1025' % patient, hello) | |
1110 self.assertEqual(int(DoGet(_REMOTE, '/patients/%s/statistics' % patient)['DiskSize']), | |
1111 int(DoGet(_REMOTE, '/statistics')['TotalDiskSize'])) | |
1112 self.assertEqual(int(DoGet(_REMOTE, '/patients/%s/statistics' % patient)['DiskSize']), | |
1113 size + int(DoGet(_REMOTE, '/patients/%s/attachments/1025/compressed-size' % patient))) | |
1114 | |
1115 DoPut(_REMOTE, '/patients/%s/attachments/1026' % patient, 'world') | |
1116 self.assertEqual(int(DoGet(_REMOTE, '/patients/%s/statistics' % patient)['DiskSize']), | |
1117 int(DoGet(_REMOTE, '/statistics')['TotalDiskSize'])) | |
1118 self.assertEqual(int(DoGet(_REMOTE, '/patients/%s/statistics' % patient)['DiskSize']), | |
1119 size + | |
1120 int(DoGet(_REMOTE, '/patients/%s/attachments/1025/compressed-size' % patient)) + | |
1121 int(DoGet(_REMOTE, '/patients/%s/attachments/1026/compressed-size' % patient))) | |
1122 | |
1123 self.assertEqual(2, len(DoGet(_REMOTE, '/patients/%s/attachments' % patient))) | |
1124 self.assertEqual(hello, DoGet(_REMOTE, '/patients/%s/attachments/1025/data' % patient)) | |
1125 self.assertEqual('world', DoGet(_REMOTE, '/patients/%s/attachments/1026/data' % patient)) | |
1126 DoPost(_REMOTE, '/patients/%s/attachments/1025/verify-md5' % patient) | |
1127 DoPost(_REMOTE, '/patients/%s/attachments/1026/verify-md5' % patient) | |
1128 DoPut(_REMOTE, '/patients/%s/attachments/1026' % patient, 'world2') | |
1129 self.assertEqual('world2', DoGet(_REMOTE, '/patients/%s/attachments/1026/data' % patient)) | |
1130 | |
1131 self.assertRaises(Exception, lambda: DoDelete(_REMOTE, '/instances/%s/attachments/dicom' % instance)) | |
1132 DoDelete(_REMOTE, '/patients/%s/attachments/1025' % patient) | |
1133 self.assertEqual(int(DoGet(_REMOTE, '/patients/%s/statistics' % patient)['DiskSize']), | |
1134 int(DoGet(_REMOTE, '/statistics')['TotalDiskSize'])) | |
1135 self.assertEqual(int(DoGet(_REMOTE, '/patients/%s/statistics' % patient)['DiskSize']), | |
1136 size + int(DoGet(_REMOTE, '/patients/%s/attachments/1026/compressed-size' % patient))) | |
1137 | |
1138 self.assertEqual(1, len(DoGet(_REMOTE, '/patients/%s/attachments' % patient))) | |
1139 DoDelete(_REMOTE, '/patients/%s/attachments/1026' % patient) | |
1140 self.assertEqual(0, len(DoGet(_REMOTE, '/patients/%s/attachments' % patient))) | |
1141 | |
1142 self.assertEqual(int(DoGet(_REMOTE, '/patients/%s/statistics' % patient)['DiskSize']), size) | |
1143 self.assertEqual(size, int(DoGet(_REMOTE, '/statistics')['TotalDiskSize'])) | |
1144 | |
1145 | |
1146 def test_incoming_storescu(self): | |
1147 self.assertEqual(0, len(DoGet(_REMOTE, '/patients'))) | |
45 | 1148 subprocess.check_call([ FindExecutable('storescu'), |
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1149 _REMOTE['Server'], str(_REMOTE['DicomPort']), |
13 | 1150 GetDatabasePath('ColorTestImageJ.dcm') ]) |
1151 self.assertEqual(1, len(DoGet(_REMOTE, '/patients'))) | |
1152 | |
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1153 i = DoGet(_REMOTE, '/instances') |
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1154 self.assertEqual(1, len(i)) |
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1155 m = DoGet(_REMOTE, '/instances/%s/metadata' % i[0]) |
145 | 1156 self.assertEqual(8, len(m)) |
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1157 self.assertTrue('IndexInSeries' in m) |
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1158 self.assertTrue('ReceptionDate' in m) |
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1159 self.assertTrue('RemoteAET' in m) |
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1160 self.assertTrue('Origin' in m) |
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1161 self.assertTrue('TransferSyntax' in m) |
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1162 self.assertTrue('SopClassUid' in m) |
145 | 1163 self.assertTrue('RemoteIP' in m) |
1164 self.assertTrue('CalledAET' in m) | |
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1165 self.assertEqual(DoGet(_REMOTE, '/instances/%s/metadata/IndexInSeries' % i[0]), 1) |
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1166 self.assertEqual(DoGet(_REMOTE, '/instances/%s/metadata/Origin' % i[0]), 'DicomProtocol') |
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1167 self.assertEqual(DoGet(_REMOTE, '/instances/%s/metadata/RemoteAET' % i[0]), 'STORESCU') |
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1168 self.assertEqual(DoGet(_REMOTE, '/instances/%s/metadata/TransferSyntax' % i[0]), '1.2.840.10008.1.2.1') |
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1169 self.assertEqual(DoGet(_REMOTE, '/instances/%s/metadata/SopClassUid' % i[0]), '1.2.840.10008.5.1.4.1.1.7') |
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1170 |
13 | 1171 |
1172 def test_incoming_findscu(self): | |
1173 UploadInstance(_REMOTE, 'Multiframe.dcm') | |
1174 UploadInstance(_REMOTE, 'ColorTestImageJ.dcm') | |
1175 | |
1176 i = CallFindScu([ '-k', '0008,0052=PATIENT', '-k', '0010,0010' ]) | |
1177 patientNames = re.findall('\(0010,0010\).*?\[(.*?)\]', i) | |
1178 self.assertEqual(2, len(patientNames)) | |
1179 self.assertTrue('Test Patient BG ' in patientNames) | |
1180 self.assertTrue('Anonymized' in patientNames) | |
1181 | |
1182 i = CallFindScu([ '-k', '0008,0052=SERIES', '-k', '0008,0021' ]) | |
1183 series = re.findall('\(0008,0021\).*?\[\s*(.*?)\s*\]', i) | |
1184 self.assertEqual(2, len(series)) | |
1185 self.assertTrue('20070208' in series) | |
1186 self.assertTrue('19980312' in series) | |
1187 | |
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1188 i = CallFindScu([ '-k', '0008,0052=SERIES', '-k', '0008,0021', '-k', 'Modality=MR\\XA' ]) |
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1189 series = re.findall('\(0008,0021\).*?\[\s*(.*?)\s*\]', i) |
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1190 self.assertEqual(1, len(series)) |
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1191 self.assertTrue('19980312' in series) |
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1192 |
13 | 1193 i = CallFindScu([ '-k', '0008,0052=SERIES', '-k', 'PatientName=Anonymized' ]) |
1194 series = re.findall('\(0010,0010\).*?\[\s*(.*?)\s*\]', i) | |
1195 self.assertEqual(1, len(series)) | |
1196 | |
1197 # Test the "CaseSentitivePN" flag (false by default) | |
1198 i = CallFindScu([ '-k', '0008,0052=SERIES', '-k', 'PatientName=anonymized' ]) | |
1199 series = re.findall('\(0010,0010\).*?\[\s*(.*?)\s*\]', i) | |
1200 self.assertEqual(1, len(series)) | |
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1201 |
70 | 1202 # Test range search (buggy if Orthanc <= 0.9.6) |
1203 i = CallFindScu([ '-k', '0008,0052=STUDY', '-k', 'StudyDate=19980312-' ]) | |
1204 studies = re.findall('\(0008,0020\).*?\[\s*(.*?)\s*\]', i) | |
1205 self.assertEqual(2, len(studies)) | |
1206 self.assertTrue('20070208' in studies) | |
1207 self.assertTrue('19980312' in studies) | |
1208 i = CallFindScu([ '-k', '0008,0052=STUDY', '-k', 'StudyDate=19980312-19980312' ]) | |
1209 studies = re.findall('\(0008,0020\).*?\[\s*(.*?)\s*\]', i) | |
1210 self.assertEqual(1, len(studies)) | |
1211 self.assertTrue('19980312' in studies) | |
1212 i = CallFindScu([ '-k', '0008,0052=STUDY', '-k', 'StudyDate=-19980312' ]) | |
1213 studies = re.findall('\(0008,0020\).*?\[\s*(.*?)\s*\]', i) | |
1214 self.assertEqual(1, len(studies)) | |
1215 self.assertTrue('19980312' in studies) | |
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1216 |
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1217 # Test that "Retrieve AE Title (0008,0054)" is present, which |
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1218 # was *not* the case in Orthanc <= 1.7.2 |
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1219 i = CallFindScu([ '-k', '0008,0052=INSTANCE' ]) |
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1220 instances = re.findall('\(0008,0054\).*?\[\s*(.*?)\s*\]', i) |
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1221 self.assertEqual(2, len(instances)) |
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1222 self.assertEqual('ORTHANC', instances[0].strip()) |
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1223 self.assertEqual('ORTHANC', instances[1].strip()) |
13 | 1224 |
1225 | |
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1226 def test_incoming_findscu_2(self): |
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1227 # This test fails if "LookupMode_DatabaseOnly" is used |
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1228 # (sequences are not available in this mode, and only main |
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1229 # DICOM tags are returned) |
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1230 UploadInstance(_REMOTE, 'Multiframe.dcm') |
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1231 UploadInstance(_REMOTE, 'ColorTestImageJ.dcm') |
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1232 |
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1233 # Test returning sequence values (only since Orthanc 0.9.5) |
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1234 i = CallFindScu([ '-k', '0008,0052=SERIES', '-k', '0008,2112' ]) # "ColorTestImageJ" has this sequence tag |
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1235 sequences = re.findall('\(0008,2112\)', i) |
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1236 self.assertEqual(1, len(sequences)) |
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1237 |
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1238 # Test returning a non-main DICOM tag, |
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1239 # "SecondaryCaptureDeviceID" (0018,1010), whose value is |
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1240 # "MEDPC" in "ColorTestImageJ.dcm" |
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1241 i = CallFindScu([ '-k', '0008,0052=SERIES', '-k', '0018,1010' ]) |
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1242 tags = re.findall('\(0018,1010\).*MEDPC', i) |
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1243 self.assertEqual(1, len(tags)) |
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1244 |
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1245 |
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1246 def test_incoming_findscu_3(self): |
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1247 # This test fails if "LookupMode_DatabaseOnly" or |
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1248 # "LookupMode_DiskOnAnswer" is used, as |
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1249 # "SecondaryCaptureDeviceID" (0018,1010) is not a main DICOM |
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1250 # tag, as thus a constraint cannot be applied to it |
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1251 UploadInstance(_REMOTE, 'ColorTestImageJ.dcm') |
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1252 |
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1253 i = CallFindScu([ '-k', '0008,0052=SERIES', '-k', '0018,1010=MEDPC' ]) |
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1254 sequences = re.findall('\(0018,1010\)', i) |
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1255 self.assertEqual(1, len(sequences)) |
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1256 |
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1257 |
13 | 1258 def test_incoming_movescu(self): |
1259 UploadInstance(_REMOTE, 'Multiframe.dcm') | |
137
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1260 |
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1261 # No matching patient, so no job is created |
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1262 self.assertEqual(0, len(DoGet(_LOCAL, '/patients'))) |
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1263 CallMoveScu([ '--patient', '-k', '0008,0052=PATIENT', '-k', 'PatientID=none' ]) |
13 | 1264 self.assertEqual(0, len(DoGet(_LOCAL, '/patients'))) |
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1265 |
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1266 # 1 Matching patient, track the job |
138 | 1267 self.assertTrue(MonitorJob(_REMOTE, lambda: CallMoveScu([ |
1268 '--patient', | |
1269 '-k', '0008,0052=PATIENT', | |
1270 '-k', 'PatientID=12345678' | |
1271 ]))) | |
13 | 1272 self.assertEqual(1, len(DoGet(_LOCAL, '/patients'))) |
1273 | |
1274 | |
1275 def test_findscu(self): | |
1276 i = UploadInstance(_REMOTE, 'DummyCT.dcm')['ID'] | |
1277 j = UploadInstance(_REMOTE, 'Issue22.dcm')['ID'] | |
1278 k = UploadInstance(_REMOTE, 'ColorTestImageJ.dcm')['ID'] | |
1279 DoPost(_REMOTE, '/modalities/orthanctest/store', str(i), 'text/plain') | |
1280 | |
1281 # Test the "find-patient" level | |
1282 p = DoPost(_REMOTE, '/modalities/orthanctest/find-patient', { }) | |
1283 self.assertEqual(1, len(p)) | |
1284 self.assertEqual('ozp00SjY2xG', p[0]['PatientID']) | |
1285 | |
1286 # Test wildcards constraints. The "LO" value representation | |
1287 # for PatientID is always case-sensitive, but the "PN" for | |
1288 # PatientName might depend on the implementation: | |
1289 # "GenerateConfigurationForTests.py" will force it to be case | |
1290 # insensitive (which was the default until Orthanc 0.8.6). | |
1291 p = DoPost(_REMOTE, '/modalities/orthanctest/find-patient', { 'PatientName' : 'K*' }) | |
1292 self.assertEqual(1, len(p)) | |
1293 | |
1294 p = DoPost(_REMOTE, '/modalities/orthanctest/find-patient', { 'PatientName' : 'k*' }) | |
1295 self.assertEqual(1, len(p)) | |
1296 | |
1297 p = DoPost(_REMOTE, '/modalities/orthanctest/find-patient', { 'PatientID' : 'ozp*' }) | |
1298 self.assertEqual(1, len(p)) | |
1299 | |
1300 p = DoPost(_REMOTE, '/modalities/orthanctest/find-patient', { 'PatientID' : 'o?p*' }) | |
1301 self.assertEqual(1, len(p)) | |
1302 | |
1303 p = DoPost(_REMOTE, '/modalities/orthanctest/find-patient', { 'PatientID' : '0?q*' }) | |
1304 self.assertEqual(0, len(p)) | |
1305 | |
1306 p = DoPost(_REMOTE, '/modalities/orthanctest/find-patient', { 'PatientName' : 'B*' }) | |
1307 self.assertEqual(0, len(p)) | |
1308 | |
1309 p = DoPost(_REMOTE, '/modalities/orthanctest/find-patient', { 'PatientName' : 'b*' }) | |
1310 self.assertEqual(0, len(p)) | |
1311 | |
1312 DoPost(_REMOTE, '/modalities/orthanctest/store', str(j), 'text/plain') | |
1313 DoPost(_REMOTE, '/modalities/orthanctest/store', str(k), 'text/plain') | |
1314 DoPost(_REMOTE, '/modalities/orthanctest/find-patient', { }) | |
1315 self.assertEqual(3, len(DoPost(_REMOTE, '/modalities/orthanctest/find-patient', { }))) | |
1316 | |
1317 p = DoPost(_REMOTE, '/modalities/orthanctest/find-patient', { 'PatientName' : 'A*' }) | |
1318 self.assertEqual(2, len(p)) | |
1319 | |
1320 # Test the "find-study" level. This is the instance "ColorTestImageJ.dcm" | |
1321 s = DoPost(_REMOTE, '/modalities/orthanctest/find-study', { 'PatientID' : 'B9uTHKOZ' }) | |
1322 self.assertEqual(1, len(s)) | |
1323 self.assertEqual('20070208', s[0]['StudyDate']) | |
1324 | |
1325 # Test range searches | |
1326 t = DoPost(_REMOTE, '/modalities/orthanctest/find-study', { 'PatientID' : 'B9uTHKOZ', | |
1327 'StudyDate' : '-20070101' }) | |
1328 self.assertEqual(0, len(t)) | |
1329 | |
1330 t = DoPost(_REMOTE, '/modalities/orthanctest/find-study', { 'PatientID' : 'B9uTHKOZ', | |
1331 'StudyDate' : '20090101-' }) | |
1332 self.assertEqual(0, len(t)) | |
1333 | |
1334 t = DoPost(_REMOTE, '/modalities/orthanctest/find-study', { 'PatientID' : 'B9uTHKOZ', | |
1335 'StudyDate' : '20070101-' }) | |
1336 self.assertEqual(1, len(t)) | |
1337 | |
1338 t = DoPost(_REMOTE, '/modalities/orthanctest/find-study', { 'PatientID' : 'B9uTHKOZ', | |
1339 'StudyDate' : '-20090101' }) | |
1340 self.assertEqual(1, len(t)) | |
1341 | |
1342 t = DoPost(_REMOTE, '/modalities/orthanctest/find-study', { 'PatientID' : 'B9uTHKOZ', | |
1343 'StudyDate' : '20070207-20070207' }) | |
1344 self.assertEqual(0, len(t)) | |
1345 | |
1346 t = DoPost(_REMOTE, '/modalities/orthanctest/find-study', { 'PatientID' : 'B9uTHKOZ', | |
1347 'StudyDate' : '20070208-20070208' }) | |
1348 self.assertEqual(1, len(t)) | |
1349 | |
1350 t = DoPost(_REMOTE, '/modalities/orthanctest/find-study', { 'PatientID' : 'B9uTHKOZ', | |
1351 'StudyDate' : '20070209-20070209' }) | |
1352 self.assertEqual(0, len(t)) | |
1353 | |
1354 # Test the ModalitiesInStudy tag | |
1355 t = DoPost(_REMOTE, '/modalities/orthanctest/find-study', { | |
1356 'PatientID' : 'B9uTHKOZ', | |
1357 'ModalitiesInStudy' : 'US' }) | |
1358 self.assertEqual(0, len(t)) | |
1359 | |
1360 t = DoPost(_REMOTE, '/modalities/orthanctest/find-study', { | |
1361 'PatientID' : 'B9uTHKOZ', | |
1362 'ModalitiesInStudy' : 'CT' }) | |
1363 self.assertEqual(1, len(t)) | |
1364 | |
1365 t = DoPost(_REMOTE, '/modalities/orthanctest/find-study', { | |
1366 'PatientID' : 'B9uTHKOZ', | |
1367 'ModalitiesInStudy' : 'US\\CT' }) | |
1368 self.assertEqual(1, len(t)) | |
1369 | |
1370 # Test the "find-series" level | |
1371 t = DoPost(_REMOTE, '/modalities/orthanctest/find-series', { | |
1372 'PatientID' : 'B9uTHKOZ', | |
1373 'StudyInstanceUID' : s[0]['StudyInstanceUID'] }) | |
1374 self.assertEqual(1, len(t)) | |
1375 | |
1376 # Test "\" separator | |
1377 t = DoPost(_REMOTE, '/modalities/orthanctest/find-series', { | |
1378 'PatientID' : 'B9uTHKOZ', | |
1379 'StudyInstanceUID' : s[0]['StudyInstanceUID'], | |
1380 'Modality' : 'MR\\CT\\US' }) | |
1381 self.assertEqual(1, len(t)) | |
1382 | |
1383 t = DoPost(_REMOTE, '/modalities/orthanctest/find-series', { | |
1384 'PatientID' : 'B9uTHKOZ', | |
1385 'StudyInstanceUID' : s[0]['StudyInstanceUID'], | |
1386 'Modality' : 'MR\\US' }) | |
1387 self.assertEqual(0, len(t)) | |
1388 | |
1389 | |
1390 def test_update_modalities(self): | |
1391 try: | |
1392 DoDelete(_REMOTE, '/modalities/toto') | |
1393 except: | |
1394 pass | |
1395 try: | |
1396 DoDelete(_REMOTE, '/modalities/tata') | |
1397 except: | |
1398 pass | |
1399 self.assertRaises(Exception, lambda: DoGet(_REMOTE, '/modalities/toto')) | |
1400 DoPut(_REMOTE, '/modalities/toto', [ "STORESCP", "localhost", 2000 ]) | |
116 | 1401 DoPut(_REMOTE, '/modalities/tata', [ "STORESCP", "localhost", 2000, 'MedInria' ]) # check backward compatiblity with obsolete manufacturer |
1402 DoDelete(_REMOTE, '/modalities/tata') | |
124 | 1403 DoPut(_REMOTE, '/modalities/tata', [ "STORESCP", "localhost", 2000, 'GenericNoUniversalWildcard' ]) |
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1404 DoDelete(_REMOTE, '/modalities/tata') |
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1405 DoPut(_REMOTE, '/modalities/tata', [ "STORESCP", "localhost", 2000, 'GenericNoWildcardInDates' ]) |
128 | 1406 modalitiesReadback = DoGet(_REMOTE, '/modalities?expand') |
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1407 self.assertEqual('STORESCP', modalitiesReadback['tata']['AET']) |
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1408 self.assertEqual('localhost', modalitiesReadback['tata']['Host']) |
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1409 self.assertEqual(2000, modalitiesReadback['tata']['Port']) |
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1410 self.assertEqual('GenericNoWildcardInDates', modalitiesReadback['tata']['Manufacturer']) |
116 | 1411 self.assertRaises(Exception, lambda: DoPut(_REMOTE, '/modalities/toto', [ "STORESCP", "localhost", 2000, 'InvalidManufacturerName' ])) |
13 | 1412 self.assertTrue('store' in DoGet(_REMOTE, '/modalities/toto')) |
1413 self.assertTrue('store' in DoGet(_REMOTE, '/modalities/tata')) | |
1414 DoDelete(_REMOTE, '/modalities/toto') | |
1415 DoDelete(_REMOTE, '/modalities/tata') | |
1416 self.assertRaises(Exception, lambda: DoGet(_REMOTE, '/modalities/toto')) | |
1417 self.assertRaises(Exception, lambda: DoGet(_REMOTE, '/modalities/tata')) | |
1418 | |
1419 | |
1420 def test_update_peers(self): | |
1421 # curl -X PUT http://localhost:8042/peers/toto -d '["http://localhost:8042/"]' -v | |
1422 try: | |
1423 DoDelete(_REMOTE, '/peers/toto') | |
1424 except: | |
1425 pass | |
1426 try: | |
1427 DoDelete(_REMOTE, '/peers/tata') | |
1428 except: | |
1429 pass | |
1430 self.assertRaises(Exception, lambda: DoGet(_REMOTE, '/peers/toto')) | |
1431 DoPut(_REMOTE, '/peers/toto', [ 'http://localhost:8042/' ]) | |
214 | 1432 DoPut(_REMOTE, '/peers/tata', { 'Url': 'http://localhost:8042/', |
1433 'Username': 'user', | |
1434 'Password' : 'pass', | |
1435 'RemoteSelf' : 'self' }) | |
128 | 1436 self.assertTrue('tata' in DoGet(_REMOTE, '/peers')) |
1437 peersReadback = DoGet(_REMOTE, '/peers?expand') | |
1438 self.assertEqual('http://localhost:8042/', peersReadback['tata']['Url']) | |
1439 self.assertEqual('user', peersReadback['tata']['Username']) | |
214 | 1440 |
1441 if IsOrthancVersionAbove(_REMOTE, 1, 5, 4): | |
1442 self.assertEqual(None, peersReadback['tata']['Password']) # make sure no sensitive data is included | |
1443 self.assertFalse(peersReadback['tata']['Pkcs11']) # make sure no sensitive data is included | |
1444 self.assertEqual('self', peersReadback['tata']['RemoteSelf']) | |
1445 else: | |
1446 self.assertFalse('Password' in peersReadback['tata']) # make sure no sensitive data is included | |
1447 self.assertFalse('Pkcs11' in peersReadback['tata']) # make sure no sensitive data is included | |
1448 self.assertFalse('RemoteSelf' in peersReadback['tata']) | |
1449 | |
128 | 1450 self.assertFalse('CertificateFile' in peersReadback['tata']) # make sure no sensitive data is included |
1451 self.assertFalse('CertificateKeyFile' in peersReadback['tata']) # make sure no sensitive data is included | |
1452 self.assertFalse('CertificateKeyPassword' in peersReadback['tata']) # make sure no sensitive data is included | |
214 | 1453 |
13 | 1454 self.assertRaises(Exception, lambda: DoPut(_REMOTE, '/peers/toto', [ 'http://localhost:8042/', 'a' ])) |
1455 self.assertRaises(Exception, lambda: DoPut(_REMOTE, '/peers/toto', [ 'http://localhost:8042/', 'a', 'b', 'c' ])) | |
1456 self.assertTrue('store' in DoGet(_REMOTE, '/peers/toto')) | |
1457 self.assertTrue('store' in DoGet(_REMOTE, '/peers/tata')) | |
1458 DoDelete(_REMOTE, '/peers/toto') | |
1459 DoDelete(_REMOTE, '/peers/tata') | |
1460 self.assertRaises(Exception, lambda: DoGet(_REMOTE, '/peers/toto')) | |
1461 self.assertRaises(Exception, lambda: DoGet(_REMOTE, '/peers/tata')) | |
1462 | |
1463 | |
1464 def test_mesterhazy_modification(self): | |
1465 # When I modify a series ( eg. curl | |
1466 # http://localhost:8042/series/uidhere/modify -X POST -d | |
1467 # '{"Replace":{"SeriesDate":"19990101"}}' ) the modified | |
1468 # series is added to a new Study, instead of the existing | |
1469 # Study. Fixed in Orthanc 0.7.5 | |
1470 | |
1471 u = UploadInstance(_REMOTE, 'DummyCT.dcm') | |
1472 study = 'b9c08539-26f93bde-c81ab0d7-bffaf2cb-a4d0bdd0' | |
1473 series = 'f2635388-f01d497a-15f7c06b-ad7dba06-c4c599fe' | |
1474 | |
1475 modified = DoPost(_REMOTE, '/series/%s/modify' % series, | |
1476 json.dumps({ "Replace" : { "SeriesDate" : "19990101" }})) | |
1477 | |
1478 self.assertEqual(study, DoGet(_REMOTE, '/series/%s' % modified['ID']) ['ParentStudy']) | |
1479 | |
1480 | |
1481 def test_create(self): | |
1482 i = DoPost(_REMOTE, '/tools/create-dicom', | |
1483 json.dumps({ | |
1484 'PatientName' : 'Jodogne', | |
1485 'Modality' : 'CT', | |
58 | 1486 'SOPClassUID' : '1.2.840.10008.5.1.4.1.1.1', |
13 | 1487 'PixelData' : 'data:image/png;base64,iVBORw0KGgoAAAANSUhEUgAAAAUAAAAFCAYAAACNbyblAAAAHElEQVQI12P4//8/w38GIAXDIBKE0DHxgljNBAAO9TXL0Y4OHwAAAABJRU5ErkJggg==' # red dot in RGBA |
1488 })) | |
1489 | |
1490 self.assertEqual('Jodogne', DoGet(_REMOTE, '/instances/%s/content/PatientName' % i['ID']).strip()) | |
1491 self.assertEqual('CT', DoGet(_REMOTE, '/instances/%s/content/Modality' % i['ID']).strip()) | |
1492 | |
1493 png = GetImage(_REMOTE, '/instances/%s/preview' % i['ID']) | |
1494 self.assertEqual((5, 5), png.size) | |
1495 | |
38 | 1496 j = DoGet(_REMOTE, i['Path']) |
1497 self.assertEqual('Instance', j['Type']) | |
1498 self.assertEqual(j['ID'], i['ID']) | |
1499 | |
13 | 1500 |
1501 def test_pilates(self): | |
1502 # "SCU failed error when accessing orthanc with osirix" by | |
1503 # Pilates Agentur (Mar 10, 2014 at 9:33 PM) | |
1504 i = UploadInstance(_REMOTE, 'PilatesArgenturGEUltrasoundOsiriX.dcm')['ID'] | |
1505 self.assertEqual(0, len(DoGet(_LOCAL, '/patients'))) | |
1506 j = DoPost(_REMOTE, '/modalities/orthanctest/store', str(i), 'text/plain') | |
1507 self.assertEqual(1, len(DoGet(_LOCAL, '/patients'))) | |
1508 | |
1509 | |
1510 def test_shared_tags(self): | |
1511 a = UploadInstance(_REMOTE, 'Knee/T1/IM-0001-0001.dcm')['ID'] | |
1512 b = UploadInstance(_REMOTE, 'Knee/T1/IM-0001-0002.dcm')['ID'] | |
1513 p = DoGet(_REMOTE, '/patients')[0] | |
1514 | |
1515 self.assertTrue('0010,0010' in DoGet(_REMOTE, '/patients/%s/shared-tags' % p)) | |
1516 self.assertTrue('PatientName' in DoGet(_REMOTE, '/patients/%s/shared-tags?simplify' % p)) | |
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1517 self.assertTrue('0010,0010' in DoGet(_REMOTE, '/patients/%s/shared-tags?short' % p)) |
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1518 |
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1519 self.assertEqual('KNEE', DoGet(_REMOTE, '/patients/%s/shared-tags' % p)['0010,0010']['Value']) |
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1520 self.assertEqual('KNEE', DoGet(_REMOTE, '/patients/%s/shared-tags?simplify' % p)['PatientName']) |
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1521 self.assertEqual('KNEE', DoGet(_REMOTE, '/patients/%s/shared-tags?short' % p)['0010,0010']) |
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1522 |
13 | 1523 self.assertTrue('0008,1030' in DoGet(_REMOTE, '/patients/%s/shared-tags' % p)) |
1524 self.assertTrue('StudyDescription' in DoGet(_REMOTE, '/patients/%s/shared-tags?simplify' % p)) | |
1525 self.assertTrue('0008,103e' in DoGet(_REMOTE, '/patients/%s/shared-tags' % p)) | |
1526 self.assertTrue('SeriesDescription' in DoGet(_REMOTE, '/patients/%s/shared-tags?simplify' % p)) | |
1527 self.assertFalse('0008,0018' in DoGet(_REMOTE, '/patients/%s/shared-tags' % p)) | |
1528 self.assertFalse('SOPInstanceUID' in DoGet(_REMOTE, '/patients/%s/shared-tags?simplify' % p)) | |
1529 | |
1530 self.assertTrue('0008,0018' in DoGet(_REMOTE, '/instances/%s/tags' % a)) | |
1531 self.assertTrue('SOPInstanceUID' in DoGet(_REMOTE, '/instances/%s/tags?simplify' % a)) | |
1532 | |
1533 | |
1534 def test_modules(self): | |
1535 a = UploadInstance(_REMOTE, 'Knee/T1/IM-0001-0001.dcm')['ID'] | |
1536 p = DoGet(_REMOTE, '/patients')[0] | |
1537 s = DoGet(_REMOTE, '/studies')[0] | |
1538 t = DoGet(_REMOTE, '/series')[0] | |
1539 | |
1540 self.assertTrue('0010,0010' in DoGet(_REMOTE, '/patients/%s/module' % p)) | |
1541 self.assertTrue('PatientName' in DoGet(_REMOTE, '/patients/%s/module?simplify' % p)) | |
1542 self.assertTrue('0010,0010' in DoGet(_REMOTE, '/studies/%s/module-patient' % p)) | |
1543 self.assertTrue('PatientName' in DoGet(_REMOTE, '/studies/%s/module-patient?simplify' % p)) | |
1544 self.assertTrue('0008,1030' in DoGet(_REMOTE, '/studies/%s/module' % s)) | |
1545 self.assertTrue('StudyDescription' in DoGet(_REMOTE, '/studies/%s/module?simplify' % s)) | |
1546 self.assertTrue('0008,103e' in DoGet(_REMOTE, '/series/%s/module' % p)) | |
1547 self.assertTrue('SeriesDescription' in DoGet(_REMOTE, '/series/%s/module?simplify' % p)) | |
1548 self.assertTrue('0008,0018' in DoGet(_REMOTE, '/instances/%s/module' % a)) | |
1549 self.assertTrue('SOPInstanceUID' in DoGet(_REMOTE, '/instances/%s/module?simplify' % a)) | |
1550 | |
1551 | |
1552 def test_auto_directory(self): | |
1553 a = UploadInstance(_REMOTE, 'Knee/T1/IM-0001-0001.dcm')['ID'] | |
1554 self.assertTrue('now' in DoGet(_REMOTE, '/tools')) | |
1555 self.assertTrue('dicom-conformance' in DoGet(_REMOTE, '/tools')) | |
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1556 self.assertTrue('invalidate-tags' in DoGet(_REMOTE, '/tools')) |
13 | 1557 self.assertTrue(len(DoGet(_REMOTE, '/tools/dicom-conformance')) > 1000) |
1558 self.assertTrue('orthanctest' in DoGet(_REMOTE, '/modalities')) | |
1559 self.assertTrue('echo' in DoGet(_REMOTE, '/modalities/orthanctest')) | |
1560 self.assertTrue('find' in DoGet(_REMOTE, '/modalities/orthanctest')) | |
1561 self.assertTrue('find-instance' in DoGet(_REMOTE, '/modalities/orthanctest')) | |
1562 self.assertTrue('find-patient' in DoGet(_REMOTE, '/modalities/orthanctest')) | |
1563 self.assertTrue('find-series' in DoGet(_REMOTE, '/modalities/orthanctest')) | |
1564 self.assertTrue('find-study' in DoGet(_REMOTE, '/modalities/orthanctest')) | |
1565 self.assertTrue('store' in DoGet(_REMOTE, '/modalities/orthanctest')) | |
1566 self.assertTrue('store' in DoGet(_REMOTE, '/peers/peer')) | |
1567 self.assertTrue('matlab' in DoGet(_REMOTE, '/instances/%s/frames/0' % a)) | |
79 | 1568 self.assertTrue('raw' in DoGet(_REMOTE, '/instances/%s/frames/0' % a)) |
13 | 1569 self.assertRaises(Exception, lambda: DoGet(_REMOTE, '/tools/nope')) |
28 | 1570 self.assertRaises(Exception, lambda: DoGet(_REMOTE, '/nope')) |
1571 self.assertRaises(Exception, lambda: DoGet(_REMOTE, '/nope/nope.html')) | |
1572 self.assertEqual(404, DoGetRaw(_REMOTE, '/nope')[0].status) | |
1573 self.assertEqual(404, DoGetRaw(_REMOTE, '/nope/nope.html')[0].status) | |
13 | 1574 |
1575 | |
1576 def test_echo(self): | |
1577 DoPost(_REMOTE, '/modalities/orthanctest/echo') | |
1578 | |
1579 | |
1580 def test_xml(self): | |
1581 json = DoGet(_REMOTE, '/tools', headers = { 'accept' : 'application/json' }) | |
1582 xml = minidom.parseString(DoGet(_REMOTE, '/tools', headers = { 'accept' : 'application/xml' })) | |
1583 items = xml.getElementsByTagName('root')[0].getElementsByTagName('item') | |
1584 self.assertEqual(len(items), len(json)) | |
1585 | |
1586 self.assertTrue('dicom-conformance' in json) | |
1587 | |
1588 ok = False | |
1589 for i in items: | |
1590 if i.childNodes[0].data == 'dicom-conformance': | |
1591 ok = True | |
1592 self.assertTrue(ok) | |
1593 | |
1594 | |
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1595 def test_googlecode_issue_16(self): |
13 | 1596 i = UploadInstance(_REMOTE, 'Issue16.dcm')['ID'] |
1597 t = DoGet(_REMOTE, '/instances/%s/tags?simplify' % i)['FrameIncrementPointer'] | |
1598 self.assertEqual('0018,1063', t) | |
1599 | |
1600 | |
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1601 def test_googlecode_issue_22(self): |
13 | 1602 s = UploadInstance(_REMOTE, 'Issue22.dcm')['ID'] |
1603 a = [ | |
1604 "f804691f62197040438f4627c6b994f1", # Frame 0 | |
1605 "c69eee9a51eea3e8611e82e578897254", | |
1606 "315666be83e2d0111c77bc0996d84901", | |
1607 "3e27aa959d911172c48a1436443c72b1", | |
1608 "958642c9e7e9d232d3869faff546058c", | |
1609 "5e7ea8e3e4230cae707d143481355c59", | |
1610 "eda37f83558d858a596175aed8b2ad47", | |
1611 "486713bd2895c4ecbe0e97715ac7f80a", | |
1612 "091ef729eb169e67da8a0faa9631f9a8", | |
1613 "5aa2b8c7ffe0a483efaa8e12417686ca", | |
1614 "e2f39e85896fe58876654b94cd0b5013", | |
1615 "6fd2129e4950abbe1be053bc814d5da8", | |
1616 "c3331a8ba7a757f3d423735ab7fa81f9", | |
1617 "746f808582156734dd6b6fdfd3a0b72c", | |
1618 "8075ea2b227a70c60ea6b7b75a6bb190", | |
1619 "806b8b3e300c615099c11a5ec23465aa", | |
1620 "7c836aa298ba6eef96434579af631a11", | |
1621 "a0357dc9f4f72d73a885c33d7c287446", | |
1622 "f25ba3be1cc7d7fad95706adc199ea7d", | |
1623 "8b114c526b8cbed6cad8a3248b7b480c", | |
1624 "44e6670f127e612a2b4aa60a0d207698", | |
1625 "b8945f90fe02facf2ace24ca1ecbe0a5", | |
1626 "95c796c2fa8f59018b15cf2987b1f79b", | |
1627 "ce0a51ab30224205b44920221dc27351", # Frame 23 | |
1628 ] | |
1629 | |
1630 self.assertEqual(24, len(DoGet(_REMOTE, '/instances/%s/frames' % s))) | |
1631 self.assertRaises(Exception, lambda: DoGet(_REMOTE, '/instances/%s/frames/24/preview' % s)) | |
1632 | |
1633 for i in range(len(a)): | |
1634 self.assertEqual(a[i], ComputeMD5(DoGet(_REMOTE, '/instances/%s/frames/%d/preview' % (s, i)))) | |
1635 | |
1636 | |
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1637 def test_googlecode_issue_19(self): |
21
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tests of image decoding
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1638 # This is an image with "YBR_FULL" photometric interpretation, it is not supported by Orthanc |
13 | 1639 # gdcmconv -i /home/jodogne/DICOM/GdcmDatabase/US_DataSet/HDI5000_US/3EAF5E01 -w -o Issue19.dcm |
1640 | |
1641 a = UploadInstance(_REMOTE, 'Issue19.dcm')['ID'] | |
304 | 1642 if not HasGdcmPlugin(_REMOTE): |
299
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1643 self.assertRaises(Exception, lambda: DoGet(_REMOTE, '/instances/941ad3c8-05d05b88-560459f9-0eae0e20-6cddd533/preview')) |
13 | 1644 |
1645 | |
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1646 def test_googlecode_issue_37(self): |
13 | 1647 # Same test for issues 35 and 37. Fixed in Orthanc 0.9.1 |
1648 u = UploadInstance(_REMOTE, 'Beaufix/IM-0001-0001.dcm')['ID'] | |
1649 | |
1650 a = DoPost(_REMOTE, '/tools/find', { 'Level' : 'Series', | |
1651 'CaseSensitive' : True, | |
1652 'Query' : { 'StationName' : 'SMR4-MP3' }}) | |
1653 self.assertEqual(1, len(a)) | |
14 | 1654 |
1655 | |
1656 def test_rest_find(self): | |
1657 # Upload 8 instances | |
1658 for i in range(2): | |
1659 UploadInstance(_REMOTE, 'Brainix/Flair/IM-0001-000%d.dcm' % (i + 1)) | |
1660 UploadInstance(_REMOTE, 'Brainix/Epi/IM-0001-000%d.dcm' % (i + 1)) | |
1661 UploadInstance(_REMOTE, 'Knee/T1/IM-0001-000%d.dcm' % (i + 1)) | |
1662 UploadInstance(_REMOTE, 'Knee/T2/IM-0001-000%d.dcm' % (i + 1)) | |
1663 | |
1664 a = DoPost(_REMOTE, '/tools/find', { 'Level' : 'Patient', | |
1665 'CaseSensitive' : False, | |
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1666 'Query' : { 'PatientName' : 'BRAINIX' }}) |
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1667 self.assertEqual(1, len(a)) |
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1668 |
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1669 a = DoPost(_REMOTE, '/tools/find', { 'Level' : 'Patient', |
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1670 'CaseSensitive' : False, |
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1671 'Query' : { 'PatientName' : 'BRAINIX\\KNEE\\NOPE' }}) |
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1672 self.assertEqual(2, len(a)) |
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1673 |
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1674 a = DoPost(_REMOTE, '/tools/find', { 'Level' : 'Patient', |
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1675 'CaseSensitive' : False, |
14 | 1676 'Query' : { 'PatientName' : '*n*' }}) |
1677 self.assertEqual(2, len(a)) | |
1678 | |
1679 a = DoPost(_REMOTE, '/tools/find', { 'Level' : 'Patient', | |
1680 'CaseSensitive' : True, | |
1681 'Query' : { 'PatientName' : '*n*' }}) | |
1682 self.assertEqual(0, len(a)) | |
1683 | |
1684 a = DoPost(_REMOTE, '/tools/find', { 'Expand' : True, | |
1685 'Level' : 'Patient', | |
1686 'CaseSensitive' : False, | |
1687 'Query' : { 'PatientName' : '*ne*' }}) | |
1688 self.assertEqual(1, len(a)) | |
1689 self.assertEqual('20080822', a[0]['MainDicomTags']['PatientBirthDate']) | |
1690 | |
1691 a = DoPost(_REMOTE, '/tools/find', { 'Level' : 'Patient', | |
1692 'CaseSensitive' : True, | |
1693 'Query' : { 'PatientName' : '*ne*' }}) | |
1694 self.assertEqual(0, len(a)) | |
1695 | |
1696 a = DoPost(_REMOTE, '/tools/find', { 'Level' : 'Study', | |
1697 'CaseSensitive' : True, | |
1698 'Query' : { 'PatientName' : '*NE*' }}) | |
1699 self.assertEqual(1, len(a)) | |
1700 | |
1701 a = DoPost(_REMOTE, '/tools/find', { 'Level' : 'Series', | |
1702 'CaseSensitive' : True, | |
1703 'Query' : { 'PatientName' : '*NE*' }}) | |
1704 self.assertEqual(2, len(a)) | |
1705 | |
1706 a = DoPost(_REMOTE, '/tools/find', { 'Level' : 'Instance', | |
1707 'CaseSensitive' : True, | |
1708 'Query' : { 'PatientName' : '*NE*' }}) | |
1709 self.assertEqual(4, len(a)) | |
1710 | |
1711 a = DoPost(_REMOTE, '/tools/find', { 'Level' : 'Patient', 'Query' : { }}) | |
1712 self.assertEqual(2, len(a)) | |
1713 | |
1714 a = DoPost(_REMOTE, '/tools/find', { 'Level' : 'Study', 'Query' : { }}) | |
1715 self.assertEqual(2, len(a)) | |
1716 | |
1717 a = DoPost(_REMOTE, '/tools/find', { 'Level' : 'Series', 'Query' : { }}) | |
1718 self.assertEqual(4, len(a)) | |
1719 | |
1720 a = DoPost(_REMOTE, '/tools/find', { 'Level' : 'Instance', 'Query' : { }}) | |
1721 self.assertEqual(8, len(a)) | |
1722 | |
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1723 a = DoPost(_REMOTE, '/tools/find', { 'Level' : 'Study', |
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1724 'Expand' : True, |
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1725 'Query' : { 'StudyDate' : '20061201-20061201' }}) |
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1726 self.assertEqual(1, len(a)) |
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1727 self.assertEqual('BRAINIX', a[0]['PatientMainDicomTags']['PatientName']) |
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1728 |
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1729 a = DoPost(_REMOTE, '/tools/find', { 'Level' : 'Study', |
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1730 'Expand' : True, |
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1731 'Query' : { 'StudyDate' : '20061201-20091201' }}) |
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1732 self.assertEqual(2, len(a)) |
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1733 for i in range(2): |
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1734 self.assertTrue(a[i]['PatientMainDicomTags']['PatientName'] in ['BRAINIX', 'KNEE']) |
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1735 |
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1736 a = DoPost(_REMOTE, '/tools/find', { 'Level' : 'Study', |
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1737 'Query' : { 'StudyDate' : '20061202-20061202' }}) |
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1738 self.assertEqual(0, len(a)) |
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1739 |
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1740 a = DoPost(_REMOTE, '/tools/find', { 'Level' : 'Study', |
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1741 'Expand' : True, |
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1742 'Query' : { 'StudyDate' : '-20061201' }}) |
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1743 self.assertEqual(1, len(a)) |
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1744 self.assertEqual('BRAINIX', a[0]['PatientMainDicomTags']['PatientName']) |
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1745 |
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1746 a = DoPost(_REMOTE, '/tools/find', { 'Level' : 'Study', |
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1747 'Expand' : True, |
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1748 'Query' : { 'StudyDate' : '-20051201' }}) |
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1749 self.assertEqual(0, len(a)) |
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1750 |
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1751 a = DoPost(_REMOTE, '/tools/find', { 'Level' : 'Study', |
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1752 'Expand' : True, |
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1753 'Query' : { 'StudyDate' : '20061201-' }}) |
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1754 self.assertEqual(2, len(a)) |
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1755 for i in range(2): |
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1756 self.assertTrue(a[i]['PatientMainDicomTags']['PatientName'] in ['BRAINIX', 'KNEE']) |
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1757 |
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1758 a = DoPost(_REMOTE, '/tools/find', { 'Level' : 'Study', |
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1759 'Expand' : True, |
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1760 'Query' : { 'StudyDate' : '20061202-' }}) |
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1761 self.assertEqual(1, len(a)) |
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1762 self.assertEqual('KNEE', a[0]['PatientMainDicomTags']['PatientName']) |
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1763 |
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1764 a = DoPost(_REMOTE, '/tools/find', { 'Level' : 'Study', |
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1765 'Expand' : True, |
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1766 'Query' : { 'StudyDate' : '20080819-' }}) |
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1767 self.assertEqual(1, len(a)) |
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1768 self.assertEqual('KNEE', a[0]['PatientMainDicomTags']['PatientName']) |
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1769 |
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1770 a = DoPost(_REMOTE, '/tools/find', { 'Level' : 'Study', |
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1771 'Expand' : True, |
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1772 'Query' : { 'StudyDate' : '20080820-' }}) |
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1773 self.assertEqual(0, len(a)) |
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14 | 1776 |
1777 def test_rest_query_retrieve(self): | |
1778 self.assertEqual(0, len(DoGet(_REMOTE, '/patients'))) | |
1779 | |
1780 # Upload 8 instances | |
1781 for i in range(2): | |
1782 UploadInstance(_REMOTE, 'Brainix/Flair/IM-0001-000%d.dcm' % (i + 1)) | |
1783 UploadInstance(_REMOTE, 'Brainix/Epi/IM-0001-000%d.dcm' % (i + 1)) | |
1784 UploadInstance(_REMOTE, 'Knee/T1/IM-0001-000%d.dcm' % (i + 1)) | |
1785 UploadInstance(_REMOTE, 'Knee/T2/IM-0001-000%d.dcm' % (i + 1)) | |
1786 | |
1787 self.assertEqual(2, len(DoGet(_REMOTE, '/patients'))) | |
1788 for p in DoGet(_REMOTE, '/patients'): | |
1789 DoPost(_REMOTE, '/modalities/orthanctest/store', p) | |
1790 DoDelete(_REMOTE, '/patients/%s' % p) | |
1791 | |
1792 for q in DoGet(_REMOTE, '/queries'): | |
1793 DoDelete(_REMOTE, '/queries/%s' % q) | |
1794 | |
1795 self.assertEqual(0, len(DoGet(_REMOTE, '/patients'))) | |
1796 self.assertEqual(0, len(DoGet(_REMOTE, '/queries'))) | |
1797 a = DoPost(_REMOTE, '/modalities/orthanctest/query', { 'Level' : 'Series', | |
27 | 1798 'Query' : { |
1799 'PatientName' : '*NE*', | |
1800 'StudyDate' : '*', | |
1801 }})['ID'] | |
14 | 1802 self.assertEqual(1, len(DoGet(_REMOTE, '/queries'))) |
1803 | |
1804 b = DoGet(_REMOTE, '/queries/%s' % a) | |
1805 self.assertTrue('answers' in b) | |
1806 self.assertTrue('level' in b) | |
1807 self.assertTrue('modality' in b) | |
1808 self.assertTrue('query' in b) | |
1809 self.assertTrue('retrieve' in b) | |
1810 self.assertEqual('Series', DoGet(_REMOTE, '/queries/%s/level' % a)) | |
1811 self.assertEqual('orthanctest', DoGet(_REMOTE, '/queries/%s/modality' % a)) | |
1812 | |
1813 q = DoGet(_REMOTE, '/queries/%s/query?simplify' % a) | |
27 | 1814 self.assertEqual(2, len(q)) |
14 | 1815 self.assertTrue('PatientName' in q) |
27 | 1816 self.assertTrue('StudyDate' in q) |
14 | 1817 self.assertEqual('*NE*', q['PatientName']) |
27 | 1818 self.assertEqual('*', q['StudyDate']) |
14 | 1819 |
1820 self.assertEqual(2, len(DoGet(_REMOTE, '/queries/%s/answers' % a))) | |
1821 | |
1822 s = DoGet(_REMOTE, '/queries/%s/answers/0' % a) | |
1823 self.assertTrue('content' in s) | |
1824 self.assertTrue('retrieve' in s) | |
1825 | |
1826 s = DoGet(_REMOTE, '/queries/%s/answers/0/content?simplify' % a) | |
1827 self.assertEqual('887', s['PatientID']) | |
1828 self.assertEqual('2.16.840.1.113669.632.20.121711.10000160881', s['StudyInstanceUID']) | |
1829 | |
1830 self.assertEqual(0, len(DoGet(_REMOTE, '/patients'))) | |
1831 DoPost(_REMOTE, '/queries/%s/answers/0/retrieve' % a, 'ORTHANC') | |
1832 self.assertEqual(1, len(DoGet(_REMOTE, '/patients'))) | |
1833 self.assertEqual(1, len(DoGet(_REMOTE, '/studies'))) | |
1834 self.assertEqual(1, len(DoGet(_REMOTE, '/series'))) | |
1835 self.assertEqual(2, len(DoGet(_REMOTE, '/instances'))) | |
1836 | |
112 | 1837 DoPost(_REMOTE, '/queries/%s/answers/1/retrieve' % a, 'ORTHANC', 'application/json') # make sure the issue #36 is fixed (query/retrieve Rest API: /retrieve route shall accept application/json content type) |
14 | 1838 self.assertEqual(1, len(DoGet(_REMOTE, '/patients'))) |
1839 self.assertEqual(1, len(DoGet(_REMOTE, '/studies'))) | |
1840 self.assertEqual(2, len(DoGet(_REMOTE, '/series'))) | |
1841 self.assertEqual(4, len(DoGet(_REMOTE, '/instances'))) | |
1842 | |
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1843 # New in Orthanc 1.4.3 |
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1844 s = DoGet(_REMOTE, '/queries/%s/answers?expand&simplify' % a) |
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1845 self.assertEqual(2, len(s)) |
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1846 for i in range(2): |
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1847 self.assertEqual('SERIES', s[i]['QueryRetrieveLevel']) |
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1848 self.assertEqual('887', s[i]['PatientID']) |
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1849 self.assertEqual('2.16.840.1.113669.632.20.121711.10000160881', s[i]['StudyInstanceUID']) |
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1850 |
14 | 1851 DoDelete(_REMOTE, '/queries/%s' % a) |
1852 self.assertEqual(0, len(DoGet(_REMOTE, '/queries'))) | |
1853 | |
1854 | |
1855 def test_parent(self): | |
1856 u = UploadInstance(_REMOTE, 'DummyCT.dcm')['ID'] | |
1857 patient = '6816cb19-844d5aee-85245eba-28e841e6-2414fae2' | |
1858 study = 'b9c08539-26f93bde-c81ab0d7-bffaf2cb-a4d0bdd0' | |
1859 series = 'f2635388-f01d497a-15f7c06b-ad7dba06-c4c599fe' | |
1860 instance = '66a662ce-7430e543-bad44d47-0dc5a943-ec7a538d' | |
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1861 self.assertEqual(instance, u) |
14 | 1862 |
1863 a = DoGet(_REMOTE, '/studies/%s/patient' % study) | |
1864 self.assertEqual('Patient', a['Type']) | |
1865 self.assertEqual(patient, a['ID']) | |
1866 | |
1867 a = DoGet(_REMOTE, '/series/%s/patient' % series) | |
1868 self.assertEqual('Patient', a['Type']) | |
1869 self.assertEqual(patient, a['ID']) | |
1870 | |
1871 a = DoGet(_REMOTE, '/series/%s/study' % series) | |
1872 self.assertEqual('Study', a['Type']) | |
1873 self.assertEqual(study, a['ID']) | |
1874 | |
1875 a = DoGet(_REMOTE, '/instances/%s/patient' % instance) | |
1876 self.assertEqual('Patient', a['Type']) | |
1877 self.assertEqual(patient, a['ID']) | |
1878 | |
1879 a = DoGet(_REMOTE, '/instances/%s/study' % instance) | |
1880 self.assertEqual('Study', a['Type']) | |
1881 self.assertEqual(study, a['ID']) | |
1882 | |
1883 a = DoGet(_REMOTE, '/instances/%s/series' % instance) | |
1884 self.assertEqual('Series', a['Type']) | |
1885 self.assertEqual(series, a['ID']) | |
1886 | |
1887 | |
1888 def test_shanon(self): | |
1889 def Anonymize(instance, replacements = {}): | |
119 | 1890 return DoPost(_REMOTE, '/instances/%s/anonymize' % instance, { |
1891 'Replace' : replacements, | |
1892 'Force' : True, | |
1893 }, 'application/json') | |
14 | 1894 |
1895 self.assertEqual(0, len(DoGet(_REMOTE, '/instances'))) | |
1896 u = UploadInstance(_REMOTE, 'DummyCT.dcm')['ID'] | |
1897 self.assertEqual(1, len(DoGet(_REMOTE, '/instances'))) | |
1898 | |
1899 tags = [ 'PatientID', 'StudyInstanceUID', 'SeriesInstanceUID', 'SOPInstanceUID', 'DeidentificationMethod' ] | |
1900 ids = [ 'ozp00SjY2xG', | |
1901 '1.2.840.113619.2.176.2025.1499492.7391.1171285944.390', | |
1902 '1.2.840.113619.2.176.2025.1499492.7391.1171285944.394', | |
1903 '1.2.840.113619.2.176.2025.1499492.7040.1171286242.109' ] | |
1904 | |
1905 a = ExtractDicomTags(Anonymize(u), tags) | |
1906 for i in range(4): | |
1907 self.assertNotEqual(ids[i], a[i]) | |
1908 self.assertTrue(a[4].startswith('Orthanc')) | |
1909 | |
1910 a = ExtractDicomTags(Anonymize(u, { 'PatientName' : 'toto' }), tags) | |
1911 for i in range(4): | |
1912 self.assertNotEqual(ids[i], a[i]) | |
1913 self.assertFalse(a[4].startswith('Orthanc')) | |
1914 | |
1915 a = ExtractDicomTags(Anonymize(u, { 'SOPInstanceUID' : 'instance' }), tags) | |
1916 self.assertEqual('instance', a[3]) | |
1917 self.assertFalse(a[4].startswith('Orthanc')) | |
1918 | |
1919 a = ExtractDicomTags(Anonymize(u, { 'SeriesInstanceUID' : 'series' }), tags) | |
1920 self.assertEqual('series', a[2]) | |
1921 self.assertFalse(a[4].startswith('Orthanc')) | |
1922 | |
1923 a = ExtractDicomTags(Anonymize(u, { 'StudyInstanceUID' : 'study' }), tags) | |
1924 self.assertEqual('study', a[1]) | |
1925 self.assertFalse(a[4].startswith('Orthanc')) | |
1926 | |
1927 a = ExtractDicomTags(Anonymize(u, { 'PatientID' : 'patient' }), tags) | |
1928 self.assertEqual('patient', a[0]) | |
1929 self.assertFalse(a[4].startswith('Orthanc')) | |
1930 | |
1931 a = ExtractDicomTags(Anonymize(u, { 'PatientID' : 'patient', | |
1932 'StudyInstanceUID' : 'study', | |
1933 'SeriesInstanceUID' : 'series', | |
1934 'SOPInstanceUID' : 'instance' }), tags) | |
1935 self.assertEqual('patient', a[0]) | |
1936 self.assertFalse(a[4].startswith('Orthanc')) | |
1937 | |
1938 self.assertEqual(1, len(DoGet(_REMOTE, '/instances'))) | |
1939 | |
1940 | |
1941 def test_shanon_2(self): | |
1942 def Modify(instance, replacements = {}): | |
119 | 1943 return DoPost(_REMOTE, '/instances/%s/modify' % instance, { |
1944 'Replace' : replacements, | |
1945 'Force': True, | |
1946 }, 'application/json') | |
14 | 1947 |
1948 self.assertEqual(0, len(DoGet(_REMOTE, '/instances'))) | |
1949 u = UploadInstance(_REMOTE, 'DummyCT.dcm')['ID'] | |
1950 self.assertEqual(1, len(DoGet(_REMOTE, '/instances'))) | |
1951 | |
1952 tags = [ 'PatientID', 'StudyInstanceUID', 'SeriesInstanceUID', 'SOPInstanceUID', 'DeidentificationMethod' ] | |
1953 ids = [ 'ozp00SjY2xG', | |
1954 '1.2.840.113619.2.176.2025.1499492.7391.1171285944.390', | |
1955 '1.2.840.113619.2.176.2025.1499492.7391.1171285944.394', | |
1956 '1.2.840.113619.2.176.2025.1499492.7040.1171286242.109' ] | |
1957 | |
1958 a = ExtractDicomTags(Modify(u), tags) | |
1959 self.assertEqual(ids[0], a[0]) | |
1960 self.assertEqual(ids[1], a[1]) | |
1961 self.assertEqual(ids[2], a[2]) | |
1962 self.assertNotEqual(ids[3], a[3]) | |
1963 self.assertEqual(0, len(a[4])) | |
1964 | |
1965 a = ExtractDicomTags(Modify(u, { 'SOPInstanceUID' : 'instance' }), tags) | |
1966 self.assertEqual(ids[0], a[0]) | |
1967 self.assertEqual(ids[1], a[1]) | |
1968 self.assertEqual(ids[2], a[2]) | |
1969 self.assertEqual('instance', a[3]) | |
1970 | |
1971 a = ExtractDicomTags(Modify(u, { 'SeriesInstanceUID' : 'series' }), tags) | |
1972 self.assertEqual(ids[0], a[0]) | |
1973 self.assertEqual(ids[1], a[1]) | |
1974 self.assertEqual('series', a[2]) | |
1975 self.assertNotEqual(ids[3], a[3]) | |
1976 | |
1977 a = ExtractDicomTags(Modify(u, { 'StudyInstanceUID' : 'study' }), tags) | |
1978 self.assertEqual(ids[0], a[0]) | |
1979 self.assertEqual('study', a[1]) | |
1980 self.assertNotEqual(ids[2], a[2]) | |
1981 self.assertNotEqual(ids[3], a[3]) | |
1982 | |
1983 a = ExtractDicomTags(Modify(u, { 'PatientID' : 'patient' }), tags) | |
1984 self.assertEqual('patient', a[0]) | |
1985 self.assertNotEqual(ids[1], a[1]) | |
1986 self.assertNotEqual(ids[2], a[2]) | |
1987 self.assertNotEqual(ids[3], a[3]) | |
1988 | |
1989 a = ExtractDicomTags(Modify(u, { 'PatientID' : 'patient', | |
1990 'StudyInstanceUID' : 'study', | |
1991 'SeriesInstanceUID' : 'series', | |
1992 'SOPInstanceUID' : 'instance' }), tags) | |
1993 self.assertEqual('patient', a[0]) | |
1994 self.assertEqual('study', a[1]) | |
1995 self.assertEqual('series', a[2]) | |
1996 self.assertEqual('instance', a[3]) | |
1997 | |
1998 self.assertEqual(1, len(DoGet(_REMOTE, '/instances'))) | |
1999 | |
2000 | |
2001 def test_instances_tags(self): | |
2002 a = UploadInstance(_REMOTE, 'Knee/T1/IM-0001-0001.dcm')['ID'] | |
2003 b = UploadInstance(_REMOTE, 'Knee/T2/IM-0001-0001.dcm')['ID'] | |
2004 #a = UploadInstance(_REMOTE, 'Cardiac/MR.X.1.2.276.0.7230010.3.1.4.2831157719.2256.1336386937.676343')['ID'] | |
2005 #b = UploadInstance(_REMOTE, 'Cardiac/MR.X.1.2.276.0.7230010.3.1.4.2831157719.2256.1336386925.676329')['ID'] | |
2006 | |
2007 i = DoGet(_REMOTE, '/patients/%s/instances-tags?simplify' % DoGet(_REMOTE, '/patients')[0]) | |
2008 self.assertEqual(2, len(i)) | |
2009 self.assertEqual('887', i[i.keys()[0]]['PatientID']) | |
2010 self.assertEqual('887', i[i.keys()[1]]['PatientID']) | |
2011 | |
2012 i = DoGet(_REMOTE, '/patients/%s/instances-tags?simplify' % DoGet(_REMOTE, '/studies')[0]) | |
2013 self.assertEqual(2, len(i)) | |
2014 self.assertEqual('887', i[i.keys()[0]]['PatientID']) | |
2015 self.assertEqual('887', i[i.keys()[1]]['PatientID']) | |
2016 | |
2017 self.assertEqual(2, len(DoGet(_REMOTE, '/series'))) | |
2018 i = DoGet(_REMOTE, '/patients/%s/instances-tags?simplify' % DoGet(_REMOTE, '/series')[0]) | |
2019 self.assertEqual(1, len(i)) | |
2020 self.assertEqual('887', i[i.keys()[0]]['PatientID']) | |
2021 | |
2022 i = DoGet(_REMOTE, '/patients/%s/instances-tags?simplify' % DoGet(_REMOTE, '/series')[1]) | |
2023 self.assertEqual(1, len(i)) | |
2024 self.assertEqual('887', i[i.keys()[0]]['PatientID']) | |
2025 | |
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2026 i = DoGet(_REMOTE, '/patients/%s/instances-tags?short' % DoGet(_REMOTE, '/series')[1]) |
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2027 self.assertEqual(1, len(i)) |
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2028 self.assertEqual('887', i[i.keys()[0]]['0010,0020']) |
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2029 |
14 | 2030 |
2031 def test_lookup(self): | |
2032 a = DoPost(_REMOTE, '/tools/lookup', 'ozp00SjY2xG') | |
2033 self.assertEqual(0, len(a)) | |
2034 | |
2035 UploadInstance(_REMOTE, 'DummyCT.dcm') | |
2036 | |
2037 a = DoPost(_REMOTE, '/tools/lookup', 'ozp00SjY2xG') | |
2038 self.assertEqual(1, len(a)) | |
2039 self.assertEqual('Patient', a[0]['Type']) | |
2040 self.assertEqual('6816cb19-844d5aee-85245eba-28e841e6-2414fae2', a[0]['ID']) | |
2041 self.assertEqual('/patients/%s' % a[0]['ID'], a[0]['Path']) | |
2042 | |
2043 a = DoPost(_REMOTE, '/tools/lookup', '1.2.840.113619.2.176.2025.1499492.7391.1171285944.390') | |
2044 self.assertEqual(1, len(a)) | |
2045 self.assertEqual('Study', a[0]['Type']) | |
2046 self.assertEqual('b9c08539-26f93bde-c81ab0d7-bffaf2cb-a4d0bdd0', a[0]['ID']) | |
2047 self.assertEqual('/studies/%s' % a[0]['ID'], a[0]['Path']) | |
2048 | |
2049 a = DoPost(_REMOTE, '/tools/lookup', '1.2.840.113619.2.176.2025.1499492.7391.1171285944.394') | |
2050 self.assertEqual(1, len(a)) | |
2051 self.assertEqual('Series', a[0]['Type']) | |
2052 self.assertEqual('f2635388-f01d497a-15f7c06b-ad7dba06-c4c599fe', a[0]['ID']) | |
2053 self.assertEqual('/series/%s' % a[0]['ID'], a[0]['Path']) | |
2054 | |
2055 a = DoPost(_REMOTE, '/tools/lookup', '1.2.840.113619.2.176.2025.1499492.7040.1171286242.109') | |
2056 self.assertEqual(1, len(a)) | |
2057 self.assertEqual('Instance', a[0]['Type']) | |
2058 self.assertEqual('66a662ce-7430e543-bad44d47-0dc5a943-ec7a538d', a[0]['ID']) | |
2059 self.assertEqual('/instances/%s' % a[0]['ID'], a[0]['Path']) | |
2060 | |
2061 DropOrthanc(_REMOTE) | |
2062 a = DoPost(_REMOTE, '/tools/lookup', '3113719P') | |
2063 self.assertEqual(0, len(a)) | |
2064 | |
15 | 2065 |
2066 def test_autorouting(self): | |
2067 knee1 = 'Knee/T1/IM-0001-0001.dcm' | |
2068 knee2 = 'Knee/T2/IM-0001-0002.dcm' | |
2069 other = 'Brainix/Flair/IM-0001-0001.dcm' | |
2070 | |
2071 # Check that this version is >= 0.8.0 | |
2072 self.assertTrue(IsDefinedInLua(_REMOTE, '_InitializeJob')) | |
2073 self.assertTrue('orthanctest' in DoGet(_REMOTE, '/modalities')) | |
2074 | |
2075 UploadInstance(_REMOTE, knee1) | |
2076 self.assertEqual(0, len(DoGet(_LOCAL, '/instances'))) | |
2077 | |
2078 DropOrthanc(_REMOTE) | |
2079 DropOrthanc(_LOCAL) | |
174 | 2080 InstallLuaScriptFromPath(_REMOTE, 'Lua/Autorouting.lua') |
15 | 2081 UploadInstance(_REMOTE, knee1) |
2082 UploadInstance(_REMOTE, knee2) | |
2083 UploadInstance(_REMOTE, other) | |
2084 WaitEmpty(_REMOTE) | |
174 | 2085 UninstallLuaCallbacks(_REMOTE) |
15 | 2086 self.assertEqual(3, len(DoGet(_LOCAL, '/instances'))) |
2087 | |
2088 DropOrthanc(_REMOTE) | |
2089 DropOrthanc(_LOCAL) | |
174 | 2090 InstallLuaScriptFromPath(_REMOTE, 'Lua/AutoroutingConditional.lua') |
15 | 2091 UploadInstance(_REMOTE, knee1) |
2092 UploadInstance(_REMOTE, knee2) | |
2093 UploadInstance(_REMOTE, other) | |
2094 WaitEmpty(_REMOTE) | |
174 | 2095 UninstallLuaCallbacks(_REMOTE) |
15 | 2096 self.assertEqual(2, len(DoGet(_LOCAL, '/instances'))) |
2097 | |
2098 DropOrthanc(_REMOTE) | |
2099 DropOrthanc(_LOCAL) | |
174 | 2100 InstallLuaScriptFromPath(_REMOTE, 'Lua/AutoroutingModification.lua') |
15 | 2101 UploadInstance(_REMOTE, knee1) |
2102 WaitEmpty(_REMOTE) | |
174 | 2103 UninstallLuaCallbacks(_REMOTE) |
15 | 2104 i = DoGet(_LOCAL, '/instances') |
2105 self.assertEqual(1, len(i)) | |
2106 | |
2107 with tempfile.NamedTemporaryFile(delete = True) as f: | |
2108 f.write(DoGet(_LOCAL, '/instances/%s/file' % i[0])) | |
2109 f.flush() | |
45 | 2110 routed = subprocess.check_output([ FindExecutable('dcm2xml'), f.name ]) |
15 | 2111 self.assertEqual('My Medical Device', re.search('"StationName">(.*?)<', routed).group(1).strip()) |
2112 self.assertEqual(None, re.search('"MilitaryRank"', routed)) | |
2113 self.assertEqual(None, re.search('"0051,0010"', routed)) # A private tag | |
17 | 2114 |
2115 | |
2116 def test_storescu_rf(self): | |
2117 i = UploadInstance(_REMOTE, 'KarstenHilbertRF.dcm')['ID'] | |
2118 self.assertEqual(0, len(DoGet(_LOCAL, '/instances'))) | |
2119 j = DoPost(_REMOTE, '/modalities/orthanctest/store', str(i), 'text/plain') | |
2120 self.assertEqual(1, len(DoGet(_LOCAL, '/instances'))) | |
18 | 2121 |
2122 | |
2123 def test_anonymize_instance(self): | |
2124 def AnonymizeAndUpload(instanceId, parameters): | |
2125 return DoPost(_REMOTE, '/instances', DoPost(_REMOTE, '/instances/%s/anonymize' % instanceId, parameters, | |
2126 'application/json'), 'application/dicom')['ID'] | |
2127 | |
2128 def ModifyAndUpload(instanceId, parameters): | |
2129 return DoPost(_REMOTE, '/instances', DoPost(_REMOTE, '/instances/%s/modify' % instanceId, parameters, | |
2130 'application/json'), 'application/dicom')['ID'] | |
2131 | |
2132 a = UploadInstance(_REMOTE, 'PrivateMDNTags.dcm')['ID'] | |
2133 s1 = DoGet(_REMOTE, '/instances/%s/content/PatientName' % a) | |
2134 s2 = DoGet(_REMOTE, '/instances/%s/content/00e1-10c2' % a) # Some private tag | |
2135 s3 = DoGet(_REMOTE, '/instances/%s/content/StudyDescription' % a) | |
2136 s4 = DoGet(_REMOTE, '/instances/%s/content/SeriesDescription' % a) | |
2137 s5 = DoGet(_REMOTE, '/instances/%s/content/InstitutionName' % a) | |
2138 | |
2139 b = AnonymizeAndUpload(a, '{}') | |
2140 self.assertNotEqual(s1, DoGet(_REMOTE, '/instances/%s/content/PatientName' % b)) | |
2141 self.assertRaises(Exception, lambda: DoGet(_REMOTE, '/instances/%s/content/00e1-10c2' % b)) | |
2142 | |
2143 # Keep private tag (only OK since Orthanc 0.8.0) | |
2144 b = AnonymizeAndUpload(a, '{"Keep":["00e1-10c2"]}') | |
2145 self.assertNotEqual(s1, DoGet(_REMOTE, '/instances/%s/content/PatientName' % b)) | |
2146 self.assertEqual(s2, DoGet(_REMOTE, '/instances/%s/content/00e1-10c2' % b)) | |
2147 | |
2148 b = AnonymizeAndUpload(a, '{"Keep":["00e1,10c2","PatientName"]}') | |
2149 self.assertEqual(s1, DoGet(_REMOTE, '/instances/%s/content/PatientName' % b)) | |
2150 self.assertEqual(s2, DoGet(_REMOTE, '/instances/%s/content/00e1-10c2' % b)) | |
2151 | |
2152 b = AnonymizeAndUpload(a, '{"Keep":["PatientName"],"Replace":{"00e1,10c2":"Hello"}}') | |
2153 self.assertEqual(s1, DoGet(_REMOTE, '/instances/%s/content/PatientName' % b)) | |
2154 self.assertTrue(DoGet(_REMOTE, '/instances/%s/content/00e1-10c2' % b).startswith('Hello')) | |
2155 | |
2156 # Examples from the Wiki | |
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2157 b = AnonymizeAndUpload(a, '{"Replace":{"PatientName":"hello","0010-0020":"world"},"Keep":["StudyDescription", "SeriesDescription"],"KeepPrivateTags": true,"Force":true}') |
18 | 2158 self.assertEqual('hello', DoGet(_REMOTE, '/instances/%s/content/0010-0010' % b).strip()) |
2159 self.assertEqual('world', DoGet(_REMOTE, '/instances/%s/content/PatientID' % b).strip()) | |
2160 self.assertEqual(s3, DoGet(_REMOTE, '/instances/%s/content/0008,1030' % b)) | |
2161 self.assertEqual(s4, DoGet(_REMOTE, '/instances/%s/content/0008,103e' % b)) | |
2162 self.assertEqual(s4, DoGet(_REMOTE, '/instances/%s/content/0008-103E' % b)) | |
2163 self.assertEqual(s2, DoGet(_REMOTE, '/instances/%s/content/00e1-10c2' % b)) | |
2164 DoGet(_REMOTE, '/instances/%s/content/InstitutionName' % a) | |
2165 self.assertRaises(Exception, lambda: DoGet(_REMOTE, '/instances/%s/content/InstitutionName' % b)) | |
2166 | |
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2167 b = ModifyAndUpload(a, '{"Replace":{"PatientName":"hello","PatientID":"world"},"Remove":["InstitutionName"],"RemovePrivateTags": true,"Force":true}') |
18 | 2168 self.assertEqual('hello', DoGet(_REMOTE, '/instances/%s/content/0010-0010' % b).strip()) |
2169 self.assertEqual('world', DoGet(_REMOTE, '/instances/%s/content/PatientID' % b).strip()) | |
2170 self.assertEqual(s3, DoGet(_REMOTE, '/instances/%s/content/0008,1030' % b)) | |
2171 self.assertEqual(s4, DoGet(_REMOTE, '/instances/%s/content/0008,103e' % b)) | |
2172 self.assertRaises(Exception, lambda: DoGet(_REMOTE, '/instances/%s/content/00e1-10c2' % b)) | |
2173 self.assertRaises(Exception, lambda: DoGet(_REMOTE, '/instances/%s/content/InstitutionName' % b)) | |
2174 | |
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2175 b = ModifyAndUpload(a, '{"Replace":{"PatientName":"hello","PatientID":"world"},"Force":true}') |
18 | 2176 self.assertEqual('hello', DoGet(_REMOTE, '/instances/%s/content/0010-0010' % b).strip()) |
2177 self.assertEqual('world', DoGet(_REMOTE, '/instances/%s/content/PatientID' % b).strip()) | |
2178 self.assertEqual(s2, DoGet(_REMOTE, '/instances/%s/content/00e1,10c2' % b)) | |
2179 self.assertEqual(s3, DoGet(_REMOTE, '/instances/%s/content/0008,1030' % b)) | |
2180 self.assertEqual(s4, DoGet(_REMOTE, '/instances/%s/content/0008-103E' % b)) | |
2181 self.assertEqual(s5, DoGet(_REMOTE, '/instances/%s/content/InstitutionName' % b)) | |
2182 | |
2183 | |
2184 # Test modify non-existing | |
2185 i = DoPost(_REMOTE, '/tools/create-dicom', | |
2186 json.dumps({ | |
2187 'PatientName' : 'Jodogne', | |
2188 'Modality' : 'CT', | |
2189 }))['ID'] | |
2190 | |
2191 self.assertEqual('Jodogne', DoGet(_REMOTE, '/instances/%s/content/PatientName' % i).strip()) | |
2192 self.assertRaises(Exception, lambda: DoGet(_REMOTE, '/instances/%s/content/StudyDescription' % i)) | |
2193 self.assertEqual('CT', DoGet(_REMOTE, '/instances/%s/content/Modality' % i).strip()) | |
2194 | |
2195 b = ModifyAndUpload(i, '{"Replace":{"StudyDescription":"hello","Modality":"world"}}') | |
2196 self.assertEqual('Jodogne', DoGet(_REMOTE, '/instances/%s/content/PatientName' % b).strip()) | |
2197 self.assertEqual('hello', DoGet(_REMOTE, '/instances/%s/content/StudyDescription' % b).strip()) | |
2198 self.assertEqual('world', DoGet(_REMOTE, '/instances/%s/content/Modality' % b).strip()) | |
2199 | |
21
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2200 |
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2201 def test_incoming_jpeg(self): |
61
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2202 def storescu(image, acceptUnknownSopClassUid): |
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2203 if acceptUnknownSopClassUid: |
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2204 tmp = [ '-xf', GetDatabasePath('UnknownSopClassUid.cfg'), 'Default' ] |
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2205 else: |
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2206 tmp = [ '-xs' ] |
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2207 |
21
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2208 with open(os.devnull, 'w') as FNULL: |
61
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2209 subprocess.check_call([ FindExecutable('storescu') ] + tmp + |
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2210 [ _REMOTE['Server'], str(_REMOTE['DicomPort']), |
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2211 GetDatabasePath(image) ], |
21
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2212 stderr = FNULL) |
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2213 |
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2214 self.assertEqual(0, len(DoGet(_REMOTE, '/patients'))) |
174 | 2215 InstallLuaScriptFromPath(_REMOTE, 'Lua/TransferSyntaxDisable.lua') |
61
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2216 self.assertRaises(Exception, lambda: storescu('Knix/Loc/IM-0001-0001.dcm', False)) |
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2217 self.assertRaises(Exception, lambda: storescu('UnknownSopClassUid.dcm', True)) |
21
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2218 self.assertEqual(0, len(DoGet(_REMOTE, '/patients'))) |
174 | 2219 InstallLuaScriptFromPath(_REMOTE, 'Lua/TransferSyntaxEnable.lua') |
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2220 DoPost(_REMOTE, '/tools/execute-script', "print('All special transfer syntaxes are now accepted')") |
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2221 storescu('Knix/Loc/IM-0001-0001.dcm', False) |
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2222 storescu('UnknownSopClassUid.dcm', True) |
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2223 self.assertEqual(2, len(DoGet(_REMOTE, '/patients'))) |
21
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2224 |
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2225 |
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2226 def test_storescu_jpeg(self): |
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2227 self.assertEqual(0, len(DoGet(_REMOTE, '/exports')['Exports'])) |
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2228 |
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2229 knixStudy = 'b9c08539-26f93bde-c81ab0d7-bffaf2cb-a4d0bdd0' |
64 | 2230 i = UploadInstance(_REMOTE, 'Knix/Loc/IM-0001-0001.dcm')['ID'] |
2231 | |
2232 # This is JPEG lossless | |
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2233 self.assertEqual('1.2.840.10008.1.2.4.70', DoGet(_REMOTE, '/instances/%s/header' % i)['0002,0010']['Value']) |
64 | 2234 self.assertEqual('1.2.840.10008.1.2.4.70', DoGet(_REMOTE, '/instances/%s/header?simplify' % i)['TransferSyntaxUID']) |
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2235 self.assertEqual('1.2.840.10008.1.2.4.70', DoGet(_REMOTE, '/instances/%s/header?short' % i)['0002,0010']) |
64 | 2236 |
21
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2237 UploadInstance(_REMOTE, 'Knix/Loc/IM-0001-0002.dcm') |
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2238 UploadInstance(_REMOTE, 'Knix/Loc/IM-0001-0003.dcm') |
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2239 |
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2240 a = UploadInstance(_REMOTE, 'Brainix/Flair/IM-0001-0001.dcm')['ID'] |
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2241 b = UploadInstance(_REMOTE, 'ColorTestImageJ.dcm')['ID'] |
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2242 self.assertEqual(0, len(DoGet(_LOCAL, '/instances'))) |
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2243 DoPost(_REMOTE, '/modalities/orthanctest/store', [ knixStudy, a, b ]) |
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2244 self.assertEqual(5, len(DoGet(_LOCAL, '/instances'))) |
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2245 |
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2246 self.assertEqual(3, len(DoGet(_REMOTE, '/exports')['Exports'])) |
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2247 |
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2248 DropOrthanc(_REMOTE) |
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2249 self.assertEqual(0, len(DoGet(_REMOTE, '/exports')['Exports'])) |
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2250 |
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2251 |
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2252 def test_pixel_data(self): |
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2253 jpeg = UploadInstance(_REMOTE, 'Knix/Loc/IM-0001-0001.dcm')['ID'] |
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2254 color = UploadInstance(_REMOTE, 'ColorTestImageJ.dcm')['ID'] |
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2255 phenix = UploadInstance(_REMOTE, 'Phenix/IM-0001-0001.dcm')['ID'] |
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2256 |
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2257 phenixSize = 358 * 512 * 2 |
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2258 colorSize = 1000 * 1000 * 3 |
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2259 jpegSize = 51918 |
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2260 |
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2261 self.assertEqual(1, len(DoGet(_REMOTE, '/instances/%s/content/7fe0-0010' % phenix))) |
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2262 self.assertEqual(1, len(DoGet(_REMOTE, '/instances/%s/content/7fe0-0010' % color))) |
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2263 self.assertEqual(2, len(DoGet(_REMOTE, '/instances/%s/content/7fe0-0010' % jpeg))) |
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2264 |
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2265 self.assertEqual(0, len(DoGet(_REMOTE, '/instances/%s/content/7fe0-0010/0' % jpeg))) |
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2266 self.assertEqual(jpegSize, len(DoGet(_REMOTE, '/instances/%s/content/7fe0-0010/1' % jpeg))) |
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2267 |
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2268 self.assertEqual(phenixSize, len(DoGet(_REMOTE, '/instances/%s/content/7fe0-0010/0' % phenix))) |
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2269 self.assertEqual(colorSize, len(DoGet(_REMOTE, '/instances/%s/content/7fe0-0010/0' % color))) |
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2270 |
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2271 |
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2272 def test_decode_brainix(self): |
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2273 brainix = [ |
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2274 UploadInstance(_REMOTE, 'Brainix/Epi/IM-0001-0001.dcm')['ID'], # (*) |
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2275 UploadInstance(_REMOTE, 'Formats/JpegLossless.dcm')['ID'], # JPEG-LS, same as (*) (since Orthanc 0.7.6) |
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2276 UploadInstance(_REMOTE, 'Formats/Jpeg.dcm')['ID'], # JPEG, same as (*) (since Orthanc 0.7.6) |
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2277 ] |
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2278 h = '6fb11b932d535c2be04beabd99793ff8' |
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2279 maxValue = 426.0 |
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2280 |
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2281 truth = Image.open(GetDatabasePath('Formats/Brainix.png')) |
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2282 for i in brainix: |
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2283 self.AssertSameImages(truth.getdata(), '/instances/%s/image-int16' % i) |
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2284 self.AssertSameImages(truth.getdata(), '/instances/%s/image-uint16' % i) |
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2285 |
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2286 truth2 = map(lambda x: min(255, x), truth.getdata()) |
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2287 for i in brainix: |
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diff
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|
2288 self.AssertSameImages(truth2, '/instances/%s/image-uint8' % i) |
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diff
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2289 |
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diff
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2290 truth2 = map(lambda x: x * 255.0 / maxValue, truth.getdata()) |
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diff
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|
2291 for i in brainix: |
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18
diff
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|
2292 self.AssertSameImages(truth2, '/instances/%s/preview' % i) |
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parents:
18
diff
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|
2293 |
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diff
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|
2294 for i in brainix: |
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diff
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2295 self.assertEqual(h, ComputeMD5(DoGet(_REMOTE, '/instances/%s/matlab' % i))) |
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diff
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|
2296 |
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diff
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|
2297 |
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diff
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|
2298 def test_decode_color(self): |
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diff
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2299 imagej = UploadInstance(_REMOTE, 'ColorTestImageJ.dcm')['ID'] |
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diff
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2300 color = UploadInstance(_REMOTE, 'ColorTestMalaterre.dcm')['ID'] |
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diff
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|
2301 |
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diff
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|
2302 for i in [ imagej, color ]: |
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parents:
18
diff
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|
2303 for j in [ 'image-uint8', 'image-uint16', 'image-int16' ]: |
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diff
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2304 self.assertRaises(Exception, lambda: DoGet(_REMOTE, '/instances/%s/%s' % (i, j))) |
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diff
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|
2305 |
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diff
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2306 self.assertEqual('c14c687f7a1ea9fe022479fc87c67274', ComputeMD5(DoGet(_REMOTE, '/instances/%s/preview' % imagej))) |
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tests of image decoding
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diff
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|
2307 self.assertEqual('a87d122918a56f803bcfe9d2586b9125', ComputeMD5(DoGet(_REMOTE, '/instances/%s/preview' % color))) |
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diff
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|
2308 |
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diff
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2309 self.assertEqual('30cc46bfa7aba77a40e4178f6184c25a', ComputeMD5(DoGet(_REMOTE, '/instances/%s/matlab' % imagej))) |
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tests of image decoding
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parents:
18
diff
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|
2310 self.assertEqual('ff195005cef06b59666fd220a9b4cd9a', ComputeMD5(DoGet(_REMOTE, '/instances/%s/matlab' % color))) |
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parents:
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diff
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|
2311 |
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parents:
18
diff
changeset
|
2312 |
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diff
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|
2313 def test_decode_rf(self): |
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diff
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2314 rf = UploadInstance(_REMOTE, 'KarstenHilbertRF.dcm')['ID'] |
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parents:
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diff
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|
2315 truth = Image.open(GetDatabasePath('Formats/KarstenHilbertRF.png')) |
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diff
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|
2316 |
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18
diff
changeset
|
2317 self.AssertSameImages(truth.getdata(), '/instances/%s/image-uint8' % rf) |
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diff
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|
2318 self.AssertSameImages(truth.getdata(), '/instances/%s/image-uint16' % rf) |
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diff
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|
2319 self.AssertSameImages(truth.getdata(), '/instances/%s/image-int16' % rf) |
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tests of image decoding
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diff
changeset
|
2320 self.AssertSameImages(truth.getdata(), '/instances/%s/preview' % rf) |
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diff
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|
2321 |
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diff
changeset
|
2322 self.assertEqual('42254d70efd2f4a1b8f3455909689f0e', ComputeMD5(DoGet(_REMOTE, '/instances/%s/matlab' % rf))) |
2a29bcff60a7
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parents:
18
diff
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|
2323 |
2a29bcff60a7
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parents:
18
diff
changeset
|
2324 |
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Sebastien Jodogne <s.jodogne@gmail.com>
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diff
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|
2325 def test_decode_multiframe(self): |
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18
diff
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2326 mf = UploadInstance(_REMOTE, 'Multiframe.dcm')['ID'] |
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parents:
18
diff
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|
2327 |
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2328 # Test the first frame |
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parents:
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diff
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|
2329 truth = Image.open(GetDatabasePath('Formats/Multiframe0.png')) |
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parents:
18
diff
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|
2330 self.AssertSameImages(truth.getdata(), '/instances/%s/image-uint8' % mf) |
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diff
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2331 self.AssertSameImages(truth.getdata(), '/instances/%s/image-uint16' % mf) |
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18
diff
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|
2332 self.AssertSameImages(truth.getdata(), '/instances/%s/image-int16' % mf) |
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18
diff
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|
2333 self.AssertSameImages(truth.getdata(), '/instances/%s/preview' % mf) |
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Sebastien Jodogne <s.jodogne@gmail.com>
parents:
18
diff
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|
2334 self.assertEqual('9812b99d93bbcd4e7684ded089b5dfb3', ComputeMD5(DoGet(_REMOTE, '/instances/%s/matlab' % mf))) |
2a29bcff60a7
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parents:
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diff
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|
2335 |
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|
2336 self.AssertSameImages(truth.getdata(), '/instances/%s/frames/0/image-uint16' % mf) |
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diff
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|
2337 |
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2338 # Test the last frame |
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18
diff
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|
2339 truth = Image.open(GetDatabasePath('Formats/Multiframe75.png')) |
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parents:
18
diff
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|
2340 self.AssertSameImages(truth.getdata(), '/instances/%s/frames/75/image-uint16' % mf) |
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|
2341 |
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|
2342 |
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|
2343 def test_decode_signed(self): |
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18
diff
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|
2344 signed = UploadInstance(_REMOTE, 'SignedCT.dcm')['ID'] |
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18
diff
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|
2345 minValue = -2000 |
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18
diff
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|
2346 maxValue = 4042 |
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diff
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|
2347 |
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|
2348 truth = Image.open(GetDatabasePath('Formats/SignedCT.png')) |
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18
diff
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|
2349 self.AssertSameImages(truth.getdata(), '/instances/%s/image-int16' % signed) |
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|
2350 |
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|
2351 truth2 = map(lambda x: 0 if x >= 32768 else x, truth.getdata()) |
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diff
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|
2352 self.AssertSameImages(truth2, '/instances/%s/image-uint16' % signed) |
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|
2353 |
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2354 truth3 = map(lambda x: 255 if x >= 256 else x, truth2) |
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18
diff
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2355 self.AssertSameImages(truth3, '/instances/%s/image-uint8' % signed) |
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diff
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|
2356 |
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18
diff
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|
2357 tmp = map(lambda x: x - 65536 if x >= 32768 else x, truth.getdata()) |
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diff
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|
2358 tmp = map(lambda x: (255.0 * (x - minValue)) / (maxValue - minValue), tmp) |
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diff
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|
2359 self.AssertSameImages(tmp, '/instances/%s/preview' % signed) |
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|
2360 |
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|
2361 self.assertEqual('b57e6c872a3da50877c7da689b03a444', ComputeMD5(DoGet(_REMOTE, '/instances/%s/matlab' % signed))) |
22 | 2362 |
2363 | |
46
85b2e36ed392
explicit GoogleCode source
Sebastien Jodogne <s.jodogne@gmail.com>
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45
diff
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|
2364 def test_googlecode_issue_32(self): |
92
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diff
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2365 self.assertRaises(Exception, lambda: DoPut(_REMOTE, '/tools/default-encoding', 'nope')) |
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2366 self.assertEqual('Windows1251', DoPut(_REMOTE, '/tools/default-encoding', 'Windows1251')) |
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2367 self.assertEqual('Windows1251', DoGet(_REMOTE, '/tools/default-encoding')) |
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2368 |
22 | 2369 f = UploadInstance(_REMOTE, 'Issue32.dcm')['ID'] |
2370 tags = DoGet(_REMOTE, '/instances/%s/tags?simplify' % f) | |
2371 self.assertEqual(u'Рентгенография', tags['SeriesDescription']) | |
2372 self.assertEqual(u'Таз', tags['BodyPartExamined']) | |
2373 self.assertEqual(u'Прямая', tags['ViewPosition']) | |
2374 | |
92
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|
2375 # Replay the same test using Latin1 as default encoding: This must fail |
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2376 self.assertEqual('Latin1', DoPut(_REMOTE, '/tools/default-encoding', 'Latin1')) |
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|
2377 |
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2378 DoDelete(_REMOTE, '/instances/%s' % f) |
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2379 f = UploadInstance(_REMOTE, 'Issue32.dcm')['ID'] |
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2380 tags = DoGet(_REMOTE, '/instances/%s/tags?simplify' % f) |
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2381 self.assertNotEqual(u'Рентгенография', tags['SeriesDescription']) |
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2382 |
314 | 2383 # Back to UTF-8 |
2384 self.assertEqual('Utf8', DoPut(_REMOTE, '/tools/default-encoding', 'Utf8')) | |
2385 | |
92
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|
2386 |
22 | 2387 def test_encodings(self): |
23 | 2388 # Latin-1 (ISO_IR 100) |
22 | 2389 brainix = UploadInstance(_REMOTE, 'Brainix/Epi/IM-0001-0001.dcm')['ID'] |
2390 tags = DoGet(_REMOTE, '/instances/%s/tags?simplify' % brainix) | |
2391 self.assertEqual(u'IRM cérébrale, neuro-crâne', tags['StudyDescription']) | |
23 | 2392 |
2393 # Latin-2 (ISO_IR 101) | |
2394 a = UploadInstance(_REMOTE, 'MarekLatin2.dcm')['ID'] | |
2395 i = DoGet(_REMOTE, '/instances/%s/simplified-tags' % a) | |
2396 # dcm2xml MarekLatin2.dcm | iconv -f latin2 -t utf-8 | xmllint --format - | |
2397 self.assertEqual('Imię i Nazwisko osoby opisującej', | |
2398 i['ContentSequence'][4]['ConceptNameCodeSequence'][0]['CodeMeaning'].encode('utf-8')) | |
2399 | |
26
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2400 |
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diff
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|
2401 def test_storescu_custom_aet(self): |
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diff
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|
2402 # This tests a feature introduced in Orthanc 0.9.1: "Custom |
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diff
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2403 # setting of the local AET during C-Store SCU (both in Lua and |
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diff
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|
2404 # in the REST API)." |
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diff
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|
2405 # https://groups.google.com/forum/#!msg/orthanc-users/o5qMULformU/wZjW2iSaMcAJ |
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2406 |
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diff
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|
2407 self.assertEqual(0, len(DoGet(_LOCAL, '/patients'))) |
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2408 |
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diff
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|
2409 a = UploadInstance(_REMOTE, 'Knee/T1/IM-0001-0001.dcm') |
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diff
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2410 b = UploadInstance(_REMOTE, 'Knee/T1/IM-0001-0002.dcm') |
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diff
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|
2411 c = UploadInstance(_REMOTE, 'Knee/T1/IM-0001-0003.dcm') |
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2412 |
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2413 j = DoPost(_REMOTE, '/modalities/orthanctest/store', { |
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2414 'LocalAet' : 'YOP', |
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2415 'Resources' : [ a['ID'], b['ID'] ] |
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2416 }) |
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2417 |
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2418 self.assertEqual(2, len(DoGet(_LOCAL, '/instances'))) |
040f6ef1394a
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2419 self.assertEqual('YOP', DoGet(_LOCAL, '/instances/%s/metadata/RemoteAET' % a['ID'])) |
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2420 |
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|
2421 DropOrthanc(_LOCAL) |
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test_storescu_custom_aet
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2422 self.assertEqual(0, len(DoGet(_LOCAL, '/instances'))) |
040f6ef1394a
test_storescu_custom_aet
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|
2423 |
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2424 j = DoPost(_REMOTE, '/modalities/orthanctest/store', { |
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diff
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|
2425 'Resources' : [ c['ID'] ] |
040f6ef1394a
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diff
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|
2426 }) |
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diff
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|
2427 |
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diff
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|
2428 self.assertEqual(1, len(DoGet(_LOCAL, '/instances'))) |
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diff
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|
2429 self.assertEqual('ORTHANC', DoGet(_LOCAL, '/instances/%s/metadata/RemoteAET' % c['ID'])) |
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|
2430 |
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test_storescu_custom_aet
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|
2431 DropOrthanc(_REMOTE) |
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test_storescu_custom_aet
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diff
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|
2432 DropOrthanc(_LOCAL) |
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test_storescu_custom_aet
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2433 |
174 | 2434 InstallLuaScriptFromPath(_REMOTE, 'Lua/AutoroutingChangeAet.lua') |
26
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2435 DoPost(_REMOTE, '/tools/execute-script', 'aet = "HELLO"', 'application/lua') |
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|
2436 |
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2437 self.assertEqual(0, len(DoGet(_LOCAL, '/instances'))) |
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2438 UploadInstance(_REMOTE, 'Knee/T1/IM-0001-0001.dcm') |
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test_storescu_custom_aet
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|
2439 WaitEmpty(_REMOTE) |
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2440 self.assertEqual(1, len(DoGet(_LOCAL, '/instances'))) |
040f6ef1394a
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2441 self.assertEqual('HELLO', DoGet(_LOCAL, '/instances/%s/metadata/RemoteAET' % a['ID'])) |
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2442 |
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test_storescu_custom_aet
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|
2443 DoPost(_REMOTE, '/tools/execute-script', 'aet = nill', 'application/lua') |
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2444 UploadInstance(_REMOTE, 'Knee/T1/IM-0001-0002.dcm') |
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test_storescu_custom_aet
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2445 WaitEmpty(_REMOTE) |
040f6ef1394a
test_storescu_custom_aet
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diff
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2446 self.assertEqual(2, len(DoGet(_LOCAL, '/instances'))) |
040f6ef1394a
test_storescu_custom_aet
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diff
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2447 self.assertEqual('ORTHANC', DoGet(_LOCAL, '/instances/%s/metadata/RemoteAET' % b['ID'])) |
34
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2448 |
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2449 def test_resources_since_limit(self): |
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2450 # Upload 16 instances |
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2451 for i in range(4): |
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2452 UploadInstance(_REMOTE, 'Brainix/Flair/IM-0001-000%d.dcm' % (i + 1)) |
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2453 UploadInstance(_REMOTE, 'Brainix/Epi/IM-0001-000%d.dcm' % (i + 1)) |
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2454 UploadInstance(_REMOTE, 'Knee/T1/IM-0001-000%d.dcm' % (i + 1)) |
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2455 UploadInstance(_REMOTE, 'Knee/T2/IM-0001-000%d.dcm' % (i + 1)) |
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2456 |
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2457 self.assertEqual(2, len(DoGet(_REMOTE, '/patients'))) |
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2458 self.assertEqual(2, len(DoGet(_REMOTE, '/studies'))) |
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2459 self.assertEqual(4, len(DoGet(_REMOTE, '/series'))) |
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2460 self.assertEqual(16, len(DoGet(_REMOTE, '/instances'))) |
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2461 |
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2462 self.assertRaises(Exception, lambda: DoGet(_REMOTE, '/patients&since=10' % i)) |
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2463 self.assertRaises(Exception, lambda: DoGet(_REMOTE, '/patients&limit=10' % i)) |
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2464 |
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2465 self.assertEqual(0, len(DoGet(_REMOTE, '/patients?since=0&limit=0'))) |
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2466 self.assertEqual(2, len(DoGet(_REMOTE, '/patients?since=0&limit=100'))) |
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2467 self.assertEqual(2, len(DoGet(_REMOTE, '/studies?since=0&limit=100'))) |
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2468 self.assertEqual(4, len(DoGet(_REMOTE, '/series?since=0&limit=100'))) |
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2469 self.assertEqual(16, len(DoGet(_REMOTE, '/instances?since=0&limit=100'))) |
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2470 self.assertEqual(1, len(DoGet(_REMOTE, '/patients?since=1&limit=100'))) |
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2471 self.assertEqual(0, len(DoGet(_REMOTE, '/patients?since=2&limit=100'))) |
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2472 self.assertEqual(0, len(DoGet(_REMOTE, '/patients?since=3&limit=100'))) |
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2473 self.assertEqual(1, len(DoGet(_REMOTE, '/studies?since=1&limit=100'))) |
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2474 self.assertEqual(3, len(DoGet(_REMOTE, '/series?since=1&limit=100'))) |
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2475 self.assertEqual(2, len(DoGet(_REMOTE, '/series?since=2&limit=100'))) |
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2476 self.assertEqual(1, len(DoGet(_REMOTE, '/series?since=3&limit=100'))) |
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2477 self.assertEqual(0, len(DoGet(_REMOTE, '/series?since=4&limit=100'))) |
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2478 self.assertEqual(0, len(DoGet(_REMOTE, '/series?since=100&limit=100'))) |
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2479 self.assertEqual(15, len(DoGet(_REMOTE, '/instances?since=1&limit=100'))) |
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|
2480 |
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|
2481 for limit in [ 1, 2, 3, 7, 16, 17 ]: |
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|
2482 s = {} |
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|
2483 since = 0 |
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|
2484 while True: |
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diff
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|
2485 t = DoGet(_REMOTE, '/instances?since=%d&limit=%d' % (since, limit)) |
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|
2486 if len(t) == 0: |
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|
2487 break |
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|
2488 |
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|
2489 since += len(t) |
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|
2490 for i in t: |
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|
2491 s[i] = None |
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|
2492 |
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|
2493 self.assertEqual(16, len(s)) |
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|
2494 for instance in DoGet(_REMOTE, '/instances'): |
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|
2495 self.assertTrue(instance in s) |
36 | 2496 |
2497 | |
2498 def test_create_pdf(self): | |
2499 # Upload 4 instances | |
2500 brainixInstance = UploadInstance(_REMOTE, 'Brainix/Flair/IM-0001-0001.dcm')['ID'] | |
2501 UploadInstance(_REMOTE, 'Brainix/Epi/IM-0001-0001.dcm') | |
2502 UploadInstance(_REMOTE, 'Knee/T1/IM-0001-0001.dcm') | |
2503 UploadInstance(_REMOTE, 'Knee/T2/IM-0001-0001.dcm') | |
2504 | |
2505 brainixPatient = '16738bc3-e47ed42a-43ce044c-a3414a45-cb069bd0' | |
2506 brainixStudy = '27f7126f-4f66fb14-03f4081b-f9341db2-53925988' | |
2507 brainixEpi = '2ac1316d-3e432022-62eabff2-c59f5475-9b1ac3f8' | |
2508 | |
2509 with open(GetDatabasePath('HelloWorld.pdf'), 'rb') as f: | |
2510 pdf = f.read() | |
2511 | |
2512 i = DoPost(_REMOTE, '/tools/create-dicom', | |
2513 json.dumps({ | |
2514 'Tags' : { | |
2515 'PatientName' : 'Jodogne', | |
2516 'Modality' : 'CT', | |
2517 }, | |
2518 'Content' : 'data:application/pdf;base64,' + base64.b64encode(pdf) | |
2519 })) | |
2520 | |
2521 self.assertEqual('Jodogne', DoGet(_REMOTE, '/instances/%s/content/PatientName' % i['ID']).strip()) | |
2522 self.assertEqual('OT', DoGet(_REMOTE, '/instances/%s/content/Modality' % i['ID']).strip()) | |
2523 | |
2524 b = DoGet(_REMOTE, '/instances/%s/content/0042-0011' % i['ID']) | |
2525 self.assertEqual(len(b), len(pdf) + 1) | |
2526 self.assertEqual(ComputeMD5(b), ComputeMD5(pdf + '\0')) | |
2527 | |
2528 self.assertRaises(Exception, lambda: DoPost(_REMOTE, '/tools/create-dicom', | |
2529 json.dumps({ | |
2530 'Parent' : brainixPatient, | |
2531 'Tags' : { | |
2532 'PatientName' : 'Jodogne', | |
2533 } | |
2534 }))) | |
2535 | |
2536 i = DoPost(_REMOTE, '/tools/create-dicom', | |
2537 json.dumps({ | |
2538 'Parent' : brainixPatient, | |
2539 'Tags' : { 'StudyDescription' : 'PDF^Patient' }, | |
2540 'Content' : 'data:application/pdf;base64,' + base64.b64encode(pdf) | |
2541 })) | |
2542 | |
2543 self.assertEqual(brainixPatient, DoGet(_REMOTE, '/instances/%s/patient' % i['ID'])['ID']) | |
2544 | |
2545 i = DoPost(_REMOTE, '/tools/create-dicom', | |
2546 json.dumps({ | |
2547 'Parent' : brainixStudy, | |
2548 'Tags' : { 'SeriesDescription' : 'PDF^Study' }, | |
2549 'Content' : 'data:application/pdf;base64,' + base64.b64encode(pdf) | |
2550 })) | |
2551 | |
2552 self.assertEqual(brainixStudy, DoGet(_REMOTE, '/instances/%s/study' % i['ID'])['ID']) | |
2553 | |
2554 i = DoPost(_REMOTE, '/tools/create-dicom', | |
2555 json.dumps({ | |
2556 'Parent' : brainixEpi, | |
37 | 2557 'Tags' : { 'SpecificCharacterSet' : 'ISO_IR 13' }, |
36 | 2558 'Content' : 'data:application/pdf;base64,' + base64.b64encode(pdf) |
2559 })) | |
2560 | |
2561 self.assertEqual(brainixEpi, DoGet(_REMOTE, '/instances/%s/series' % i['ID'])['ID']) | |
2562 | |
2563 b = DoGet(_REMOTE, '/instances/%s/pdf' % i['ID']) | |
2564 self.assertEqual(len(b), len(pdf)) | |
2565 self.assertEqual(ComputeMD5(b), ComputeMD5(pdf)) | |
2566 | |
2567 self.assertRaises(Exception, lambda: DoGet(_REMOTE, '/instances/%s/pdf' % brainixInstance)) | |
38 | 2568 |
2569 | |
2570 def test_create_series(self): | |
2571 i = DoPost(_REMOTE, '/tools/create-dicom', | |
2572 json.dumps({ | |
2573 'Tags' : { | |
40 | 2574 'SpecificCharacterSet' : 'ISO_IR 100', |
2575 'PatientName' : 'Sébastien Jodogne', | |
38 | 2576 'Modality' : 'CT', |
2577 }, | |
2578 'Content' : [ | |
40 | 2579 { |
2580 'Content': 'data:image/png;base64,iVBORw0KGgoAAAANSUhEUgAAAAUAAAAFCAYAAACNbyblAAAAHElEQVQI12P4//8/w38GIAXDIBKE0DHxgljNBAAO9TXL0Y4OHwAAAABJRU5ErkJggg==', # red dot in RGBA | |
2581 'Tags' : { 'ImageComments' : 'Tutu' } | |
2582 }, | |
38 | 2583 'data:image/png;base64,iVBORw0KGgoAAAANSUhEUgAAABAAAAAQCAYAAAAf8/9hAAAAoUlEQVQ4jZ2SWw3EIBREjwUsYAELa2EtoAULFUCyXAtroRZqoRbox254BdLC/DZnZjoXWJFgCDg8egW2CBEhEnDzyRk+Ecxz2KP/0AL8S99T+jQccAVs22qKwAuPuq0uyNg9cPLh3am+pe/dkHLZtqJHj6vXJrZ7nvzvxxgemXgUwnGfXqpee09mUwp8m022OYP6bLF7mVuVe0y/umxinsAXRd9z0k1ubWsAAAAASUVORK5CYII=', |
2584 ] | |
2585 })) | |
2586 | |
2587 s = DoGet(_REMOTE, i['Path']) | |
2588 self.assertEqual('Series', s['Type']) | |
2589 self.assertEqual(s['ID'], i['ID']) | |
2590 self.assertEqual(2, len(s['Instances'])) | |
39 | 2591 self.assertEqual(2, s['ExpectedNumberOfInstances']) |
2592 self.assertEqual('Complete', s['Status']) | |
40 | 2593 |
2594 a = DoGet(_REMOTE, '/instances/%s/tags?simplify' % s['Instances'][0]) | |
2595 b = DoGet(_REMOTE, '/instances/%s/tags?simplify' % s['Instances'][1]) | |
2596 self.assertTrue('ImageComments' in a or 'ImageComments' in b) | |
2597 if 'ImageComments' in a: | |
2598 self.assertEqual('Tutu', a['ImageComments']) | |
2599 else: | |
2600 self.assertEqual('Tutu', b['ImageComments']) | |
2601 | |
2602 patient = DoGet(_REMOTE, '/instances/%s/patient' % s['Instances'][0]) | |
2603 self.assertEqual(patient['MainDicomTags']['PatientName'].encode('utf-8'), | |
2604 'Sébastien Jodogne') | |
47 | 2605 |
2606 | |
2607 def test_create_binary(self): | |
2608 binary = ''.join(map(chr, range(256))) | |
2609 encoded = 'data:application/octet-stream;base64,' + base64.b64encode(binary) | |
2610 tags = { | |
2611 'PatientName' : 'Jodogne', | |
2612 '8899-8899' : encoded | |
2613 } | |
2614 | |
2615 i = DoPost(_REMOTE, '/tools/create-dicom', | |
2616 json.dumps({ | |
266 | 2617 'Tags' : tags, |
2618 'PrivateCreator' : 'TestBinary', | |
47 | 2619 })) |
2620 | |
2621 self.assertEqual('Jodogne', DoGet(_REMOTE, '/instances/%s/content/PatientName' % i['ID']).strip()) | |
2622 self.assertEqual(binary, DoGet(_REMOTE, '/instances/%s/content/8899-8899' % i['ID']).strip()) | |
2623 | |
2624 i = DoPost(_REMOTE, '/tools/create-dicom', | |
2625 json.dumps({ | |
2626 'InterpretBinaryTags' : False, | |
266 | 2627 'Tags' : tags, |
2628 'PrivateCreator' : 'TestBinary', | |
47 | 2629 })) |
2630 | |
2631 self.assertEqual('Jodogne', DoGet(_REMOTE, '/instances/%s/content/PatientName' % i['ID']).strip()) | |
2632 self.assertEqual(encoded, DoGet(_REMOTE, '/instances/%s/content/8899-8899' % i['ID'])[0:-1]) | |
48
e4352463ff74
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Sebastien Jodogne <s.jodogne@gmail.com>
parents:
47
diff
changeset
|
2633 |
e4352463ff74
test_patient_ids_collision
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
47
diff
changeset
|
2634 |
e4352463ff74
test_patient_ids_collision
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
47
diff
changeset
|
2635 def test_patient_ids_collision(self): |
e4352463ff74
test_patient_ids_collision
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
47
diff
changeset
|
2636 # Upload 3 instances from 3 different studies, but with the |
e4352463ff74
test_patient_ids_collision
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
47
diff
changeset
|
2637 # same PatientID |
e4352463ff74
test_patient_ids_collision
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
47
diff
changeset
|
2638 for i in range(3): |
e4352463ff74
test_patient_ids_collision
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
47
diff
changeset
|
2639 UploadInstance(_REMOTE, 'PatientIdsCollision/Image%d.dcm' % (i + 1)) |
e4352463ff74
test_patient_ids_collision
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
47
diff
changeset
|
2640 |
e4352463ff74
test_patient_ids_collision
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
47
diff
changeset
|
2641 a = DoPost(_REMOTE, '/tools/find', { 'Level' : 'Patient', |
e4352463ff74
test_patient_ids_collision
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
47
diff
changeset
|
2642 'Query' : { 'PatientName' : '*' }}) |
e4352463ff74
test_patient_ids_collision
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
47
diff
changeset
|
2643 self.assertEqual(1, len(a)) |
e4352463ff74
test_patient_ids_collision
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
47
diff
changeset
|
2644 self.assertEqual('COMMON', DoGet(_REMOTE, '/patients/%s' % a[0]) ['MainDicomTags']['PatientID']) |
e4352463ff74
test_patient_ids_collision
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
47
diff
changeset
|
2645 |
e4352463ff74
test_patient_ids_collision
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
47
diff
changeset
|
2646 a = DoPost(_REMOTE, '/tools/find', { 'Level' : 'Study', |
e4352463ff74
test_patient_ids_collision
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
47
diff
changeset
|
2647 'CaseSensitive' : True, |
e4352463ff74
test_patient_ids_collision
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
47
diff
changeset
|
2648 'Query' : { 'PatientName' : 'FOO\\HELLO' }}) |
e4352463ff74
test_patient_ids_collision
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
47
diff
changeset
|
2649 self.assertEqual(2, len(a)) |
e4352463ff74
test_patient_ids_collision
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
47
diff
changeset
|
2650 |
e4352463ff74
test_patient_ids_collision
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
47
diff
changeset
|
2651 a = DoPost(_REMOTE, '/tools/find', { 'Level' : 'Series', |
e4352463ff74
test_patient_ids_collision
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
47
diff
changeset
|
2652 'CaseSensitive' : False, |
e4352463ff74
test_patient_ids_collision
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
47
diff
changeset
|
2653 'Query' : { 'PatientName' : 'Foo' }}) |
e4352463ff74
test_patient_ids_collision
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
47
diff
changeset
|
2654 self.assertEqual(1, len(a)) |
e4352463ff74
test_patient_ids_collision
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
47
diff
changeset
|
2655 self.assertEqual('FOO^SERIES', DoGet(_REMOTE, '/series/%s/study' % a[0]) ['MainDicomTags']['StudyDescription']) |
e4352463ff74
test_patient_ids_collision
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
47
diff
changeset
|
2656 self.assertEqual('FOO', DoGet(_REMOTE, '/series/%s/study' % a[0]) ['PatientMainDicomTags']['PatientName']) |
e4352463ff74
test_patient_ids_collision
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
47
diff
changeset
|
2657 self.assertEqual('COMMON', DoGet(_REMOTE, '/series/%s/study' % a[0]) ['PatientMainDicomTags']['PatientID']) |
e4352463ff74
test_patient_ids_collision
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
47
diff
changeset
|
2658 |
e4352463ff74
test_patient_ids_collision
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
47
diff
changeset
|
2659 a = DoPost(_REMOTE, '/tools/find', { 'Level' : 'Study', |
e4352463ff74
test_patient_ids_collision
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
47
diff
changeset
|
2660 'Query' : { 'PatientName' : '*' }}) |
e4352463ff74
test_patient_ids_collision
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
47
diff
changeset
|
2661 self.assertEqual(3, len(a)) |
e4352463ff74
test_patient_ids_collision
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
47
diff
changeset
|
2662 d = map(lambda x: DoGet(_REMOTE, '/studies/%s' % x) ['MainDicomTags']['StudyDescription'], a) |
e4352463ff74
test_patient_ids_collision
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
47
diff
changeset
|
2663 self.assertTrue('FOO^SERIES' in d) |
e4352463ff74
test_patient_ids_collision
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
47
diff
changeset
|
2664 self.assertTrue('HELLO^SERIES' in d) |
e4352463ff74
test_patient_ids_collision
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
47
diff
changeset
|
2665 self.assertTrue('WORLD^SERIES' in d) |
e4352463ff74
test_patient_ids_collision
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
47
diff
changeset
|
2666 |
e4352463ff74
test_patient_ids_collision
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
47
diff
changeset
|
2667 d = map(lambda x: DoGet(_REMOTE, '/studies/%s' % x) ['PatientMainDicomTags']['PatientID'], a) |
e4352463ff74
test_patient_ids_collision
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
47
diff
changeset
|
2668 self.assertEqual(1, len(set(d))) |
e4352463ff74
test_patient_ids_collision
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
47
diff
changeset
|
2669 self.assertEqual('COMMON', d[0]) |
e4352463ff74
test_patient_ids_collision
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
47
diff
changeset
|
2670 |
e4352463ff74
test_patient_ids_collision
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
47
diff
changeset
|
2671 for i in a: |
e4352463ff74
test_patient_ids_collision
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
47
diff
changeset
|
2672 d = DoGet(_REMOTE, '/studies/%s' % i) ['MainDicomTags']['StudyDescription'] |
e4352463ff74
test_patient_ids_collision
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
47
diff
changeset
|
2673 p = DoGet(_REMOTE, '/studies/%s' % i) ['PatientMainDicomTags']['PatientName'] |
e4352463ff74
test_patient_ids_collision
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
47
diff
changeset
|
2674 self.assertEqual('%s^SERIES' % p, d) |
49
e7f9b8199545
test_bitbucket_issue_4
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
48
diff
changeset
|
2675 |
e7f9b8199545
test_bitbucket_issue_4
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
48
diff
changeset
|
2676 |
e7f9b8199545
test_bitbucket_issue_4
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
48
diff
changeset
|
2677 def test_bitbucket_issue_4(self): |
e7f9b8199545
test_bitbucket_issue_4
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
48
diff
changeset
|
2678 UploadInstance(_REMOTE, 'Brainix/Epi/IM-0001-0001.dcm') |
e7f9b8199545
test_bitbucket_issue_4
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
48
diff
changeset
|
2679 UploadInstance(_REMOTE, 'Brainix/Epi/IM-0001-0002.dcm') |
e7f9b8199545
test_bitbucket_issue_4
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
48
diff
changeset
|
2680 UploadInstance(_REMOTE, 'Brainix/Epi/IM-0001-0003.dcm') |
e7f9b8199545
test_bitbucket_issue_4
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
48
diff
changeset
|
2681 UploadInstance(_REMOTE, 'Formats/Jpeg.dcm') |
e7f9b8199545
test_bitbucket_issue_4
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
48
diff
changeset
|
2682 UploadInstance(_REMOTE, 'Formats/JpegLossless.dcm') |
e7f9b8199545
test_bitbucket_issue_4
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
48
diff
changeset
|
2683 UploadInstance(_REMOTE, 'Formats/Rle.dcm') |
e7f9b8199545
test_bitbucket_issue_4
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
48
diff
changeset
|
2684 |
e7f9b8199545
test_bitbucket_issue_4
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
48
diff
changeset
|
2685 self.assertEqual(0, len(DoGet(_LOCAL, '/instances'))) |
e7f9b8199545
test_bitbucket_issue_4
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
48
diff
changeset
|
2686 self.assertEqual(6, len(DoGet(_REMOTE, '/instances'))) |
e7f9b8199545
test_bitbucket_issue_4
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
48
diff
changeset
|
2687 |
e7f9b8199545
test_bitbucket_issue_4
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
48
diff
changeset
|
2688 p = DoGet(_REMOTE, '/patients') |
e7f9b8199545
test_bitbucket_issue_4
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
48
diff
changeset
|
2689 self.assertEqual(2, len(p)) |
e7f9b8199545
test_bitbucket_issue_4
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
48
diff
changeset
|
2690 i1 = map(lambda x: x['ID'], DoGet(_REMOTE, '/patients/%s/instances' % p[0])) |
e7f9b8199545
test_bitbucket_issue_4
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
48
diff
changeset
|
2691 i2 = map(lambda x: x['ID'], DoGet(_REMOTE, '/patients/%s/instances' % p[1])) |
e7f9b8199545
test_bitbucket_issue_4
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
48
diff
changeset
|
2692 self.assertEqual(3, len(i1)) |
e7f9b8199545
test_bitbucket_issue_4
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
48
diff
changeset
|
2693 self.assertEqual(3, len(i2)) |
e7f9b8199545
test_bitbucket_issue_4
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
48
diff
changeset
|
2694 |
e7f9b8199545
test_bitbucket_issue_4
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
48
diff
changeset
|
2695 j = DoPost(_REMOTE, '/modalities/orthanctest/store', i2[0:1] + i1 + i2[1:3]) |
e7f9b8199545
test_bitbucket_issue_4
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
48
diff
changeset
|
2696 |
e7f9b8199545
test_bitbucket_issue_4
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
48
diff
changeset
|
2697 self.assertEqual(6, len(DoGet(_LOCAL, '/instances'))) |
50
8de63d56cf11
test_create_sequence
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parents:
49
diff
changeset
|
2698 |
8de63d56cf11
test_create_sequence
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
49
diff
changeset
|
2699 |
8de63d56cf11
test_create_sequence
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
49
diff
changeset
|
2700 def test_create_sequence(self): |
8de63d56cf11
test_create_sequence
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
49
diff
changeset
|
2701 i = DoPost(_REMOTE, '/tools/create-dicom', |
8de63d56cf11
test_create_sequence
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
49
diff
changeset
|
2702 json.dumps({ |
8de63d56cf11
test_create_sequence
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
49
diff
changeset
|
2703 'Tags' : { |
8de63d56cf11
test_create_sequence
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parents:
49
diff
changeset
|
2704 'SpecificCharacterSet': 'ISO_IR 100', # Encode using Latin1 |
8de63d56cf11
test_create_sequence
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parents:
49
diff
changeset
|
2705 'PatientName': 'Jodogne^', |
51
264a20a0276d
test_modify_sequence
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
50
diff
changeset
|
2706 'ReferencedStudySequence': GenerateTestSequence(), |
50
8de63d56cf11
test_create_sequence
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parents:
49
diff
changeset
|
2707 } |
8de63d56cf11
test_create_sequence
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
49
diff
changeset
|
2708 }))['ID'] |
8de63d56cf11
test_create_sequence
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
49
diff
changeset
|
2709 |
8de63d56cf11
test_create_sequence
Sebastien Jodogne <s.jodogne@gmail.com>
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49
diff
changeset
|
2710 self.assertEqual('Jodogne^', DoGet(_REMOTE, '/instances/%s/content/PatientName' % i)) |
8de63d56cf11
test_create_sequence
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
49
diff
changeset
|
2711 self.assertEqual('Hello^', DoGet(_REMOTE, '/instances/%s/content/ReferencedStudySequence/0/StudyDescription' % i)) |
8de63d56cf11
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Sebastien Jodogne <s.jodogne@gmail.com>
parents:
49
diff
changeset
|
2712 self.assertEqual('Toto', DoGet(_REMOTE, '/instances/%s/content/ReferencedStudySequence/0/ReferencedStudySequence/0/StudyDescription' % i)) |
8de63d56cf11
test_create_sequence
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
49
diff
changeset
|
2713 self.assertEqual('Tata', DoGet(_REMOTE, '/instances/%s/content/ReferencedStudySequence/0/ReferencedStudySequence/1/StudyDescription' % i)) |
8de63d56cf11
test_create_sequence
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
49
diff
changeset
|
2714 self.assertEqual(u'Sébastien^'.encode('latin-1'), |
8de63d56cf11
test_create_sequence
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
49
diff
changeset
|
2715 DoGet(_REMOTE, '/instances/%s/content/ReferencedStudySequence/1/StudyDescription' % i)) |
51
264a20a0276d
test_modify_sequence
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50
diff
changeset
|
2716 |
264a20a0276d
test_modify_sequence
Sebastien Jodogne <s.jodogne@gmail.com>
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50
diff
changeset
|
2717 |
264a20a0276d
test_modify_sequence
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
50
diff
changeset
|
2718 def test_modify_sequence(self): |
264a20a0276d
test_modify_sequence
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
50
diff
changeset
|
2719 i = UploadInstance(_REMOTE, 'PrivateTags.dcm')['ID'] |
264a20a0276d
test_modify_sequence
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
50
diff
changeset
|
2720 self.assertRaises(Exception, lambda: DoGet(_REMOTE, '/instances/%s/content/ReferencedStudySequence' % i)) |
264a20a0276d
test_modify_sequence
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
50
diff
changeset
|
2721 |
264a20a0276d
test_modify_sequence
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
50
diff
changeset
|
2722 j = DoPost(_REMOTE, '/instances/%s/modify' % i, |
264a20a0276d
test_modify_sequence
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
50
diff
changeset
|
2723 json.dumps({ |
264a20a0276d
test_modify_sequence
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
50
diff
changeset
|
2724 "Replace" : { |
264a20a0276d
test_modify_sequence
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
50
diff
changeset
|
2725 "PatientName" : "hello", |
264a20a0276d
test_modify_sequence
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parents:
50
diff
changeset
|
2726 'ReferencedStudySequence': GenerateTestSequence(), |
264a20a0276d
test_modify_sequence
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
50
diff
changeset
|
2727 }, |
264a20a0276d
test_modify_sequence
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
50
diff
changeset
|
2728 }), |
264a20a0276d
test_modify_sequence
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
50
diff
changeset
|
2729 'application/json') |
264a20a0276d
test_modify_sequence
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
50
diff
changeset
|
2730 j = DoPost(_REMOTE, '/instances', j, 'application/dicom')['ID'] |
264a20a0276d
test_modify_sequence
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
50
diff
changeset
|
2731 DoDelete(_REMOTE, '/instances/%s' % i) |
264a20a0276d
test_modify_sequence
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parents:
50
diff
changeset
|
2732 |
52 | 2733 self.assertEqual(2, len(DoGet(_REMOTE, '/instances/%s/content/ReferencedStudySequence' % j))) |
2734 | |
2735 | |
2736 def test_compression(self): | |
2737 i = UploadInstance(_REMOTE, 'DummyCT.dcm')['ID'] | |
2738 | |
2739 data = DoGetRaw(_REMOTE, '/instances/%s/attachments/dicom-as-json/data' % i)[1] | |
2740 | |
2741 # "StorageCompression" is enabled in the Orthanc to be tested, | |
2742 # uncompress the data before running the test | |
2743 if DoGet(_REMOTE, '/instances/%s/attachments/dicom-as-json/is-compressed' % i) != 0: | |
2744 DoPost(_REMOTE, '/instances/%s/attachments/dicom-as-json/uncompress' % i) | |
2745 | |
2746 cs = DoGet(_REMOTE, '/statistics')['TotalDiskSize'] | |
2747 us = DoGet(_REMOTE, '/statistics')['TotalUncompressedSize'] | |
2748 size = DoGet(_REMOTE, '/instances/%s/attachments/dicom-as-json/size' % i) | |
2749 md5 = DoGet(_REMOTE, '/instances/%s/attachments/dicom-as-json/md5' % i) | |
2750 self.assertEqual(data, DoGetRaw(_REMOTE, '/instances/%s/attachments/dicom-as-json/compressed-data' % i)[1]) | |
2751 self.assertEqual(md5, DoGet(_REMOTE, '/instances/%s/attachments/dicom-as-json/compressed-md5' % i)) | |
2752 self.assertEqual(size, DoGet(_REMOTE, '/instances/%s/attachments/dicom-as-json/compressed-size' % i)) | |
2753 | |
2754 ops = DoGet(_REMOTE, '/instances/%s/attachments/dicom-as-json' % i) | |
2755 self.assertTrue('compress' in ops) | |
2756 self.assertTrue('uncompress' in ops) | |
2757 self.assertTrue('is-compressed' in ops) | |
2758 self.assertEqual(0, DoGet(_REMOTE, '/instances/%s/attachments/dicom-as-json/is-compressed' % i)) | |
2759 DoPost(_REMOTE, '/instances/%s/attachments/dicom-as-json/verify-md5' % i) | |
2760 | |
2761 DoPost(_REMOTE, '/instances/%s/attachments/dicom-as-json/compress' % i) | |
2762 DoPost(_REMOTE, '/instances/%s/attachments/dicom-as-json/verify-md5' % i) | |
2763 self.assertEqual(1, DoGet(_REMOTE, '/instances/%s/attachments/dicom-as-json/is-compressed' % i)) | |
2764 self.assertLess(cs, DoGet(_REMOTE, '/statistics')['TotalDiskSize']) | |
2765 self.assertEqual(us, DoGet(_REMOTE, '/statistics')['TotalUncompressedSize']) | |
2766 self.assertGreater(len(data), len(DoGetRaw(_REMOTE, '/instances/%s/attachments/dicom-as-json/compressed-data' % i)[1])) | |
2767 self.assertGreater(size, DoGet(_REMOTE, '/instances/%s/attachments/dicom-as-json/compressed-size' % i)) | |
2768 self.assertEqual(size, DoGet(_REMOTE, '/instances/%s/attachments/dicom-as-json/size' % i)) | |
2769 self.assertEqual(md5, DoGet(_REMOTE, '/instances/%s/attachments/dicom-as-json/md5' % i)) | |
2770 self.assertNotEqual(md5, DoGet(_REMOTE, '/instances/%s/attachments/dicom-as-json/compressed-md5' % i)) | |
2771 | |
2772 DoPost(_REMOTE, '/instances/%s/attachments/dicom-as-json/uncompress' % i) | |
2773 DoPost(_REMOTE, '/instances/%s/attachments/dicom-as-json/verify-md5' % i) | |
2774 self.assertEqual(0, DoGet(_REMOTE, '/instances/%s/attachments/dicom-as-json/is-compressed' % i)) | |
2775 self.assertEqual(data, DoGetRaw(_REMOTE, '/instances/%s/attachments/dicom-as-json/compressed-data' % i)[1]) | |
2776 self.assertEqual(size, DoGet(_REMOTE, '/instances/%s/attachments/dicom-as-json/compressed-size' % i)) | |
2777 self.assertEqual(size, DoGet(_REMOTE, '/instances/%s/attachments/dicom-as-json/size' % i)) | |
2778 self.assertEqual(md5, DoGet(_REMOTE, '/instances/%s/attachments/dicom-as-json/md5' % i)) | |
2779 self.assertEqual(md5, DoGet(_REMOTE, '/instances/%s/attachments/dicom-as-json/compressed-md5' % i)) | |
2780 self.assertEqual(cs, DoGet(_REMOTE, '/statistics')['TotalDiskSize']) | |
2781 self.assertEqual(us, DoGet(_REMOTE, '/statistics')['TotalUncompressedSize']) | |
53 | 2782 |
2783 | |
2784 def test_ordered_slices(self): | |
2785 i = UploadInstance(_REMOTE, 'Multiframe.dcm')['ID'] | |
2786 s = DoGet(_REMOTE, '/instances/%s' % i)['ParentSeries'] | |
2787 o = DoGet(_REMOTE, '/series/%s/ordered-slices' % s) | |
2788 self.assertEqual('Sequence', o['Type']) | |
2789 self.assertEqual(1, len(o['Dicom'])) | |
2790 self.assertEqual('/instances/9e05eb0a-18b6268c-e0d36085-8ddab517-3b5aec02/file', o['Dicom'][0]) | |
2791 self.assertEqual(76, len(o['Slices'])) | |
2792 for j in range(76): | |
2793 self.assertEqual('/instances/9e05eb0a-18b6268c-e0d36085-8ddab517-3b5aec02/frames/%d' % j, o['Slices'][j]) | |
2794 | |
68 | 2795 self.assertEqual(1, len(o['SlicesShort'])) |
2796 self.assertEqual('9e05eb0a-18b6268c-e0d36085-8ddab517-3b5aec02', o['SlicesShort'][0][0]) | |
2797 self.assertEqual(0, o['SlicesShort'][0][1]) | |
2798 self.assertEqual(76, o['SlicesShort'][0][2]) | |
2799 | |
53 | 2800 i = UploadInstance(_REMOTE, 'Brainix/Epi/IM-0001-0001.dcm')['ID'] |
2801 j = UploadInstance(_REMOTE, 'Brainix/Epi/IM-0001-0002.dcm')['ID'] | |
2802 k = UploadInstance(_REMOTE, 'Brainix/Epi/IM-0001-0003.dcm')['ID'] | |
2803 s = DoGet(_REMOTE, '/instances/%s' % i)['ParentSeries'] | |
2804 o = DoGet(_REMOTE, '/series/%s/ordered-slices' % s) | |
2805 | |
2806 self.assertEqual('Volume', o['Type']) | |
2807 self.assertEqual(3, len(o['Dicom'])) | |
2808 self.assertEqual(3, len(o['Slices'])) | |
2809 self.assertEqual('/instances/%s/file' % i, o['Dicom'][2]) | |
2810 self.assertEqual('/instances/%s/file' % j, o['Dicom'][1]) | |
2811 self.assertEqual('/instances/%s/file' % k, o['Dicom'][0]) | |
2812 self.assertEqual('/instances/%s/frames/0' % i, o['Slices'][2]) | |
2813 self.assertEqual('/instances/%s/frames/0' % j, o['Slices'][1]) | |
2814 self.assertEqual('/instances/%s/frames/0' % k, o['Slices'][0]) | |
2815 | |
68 | 2816 self.assertEqual(3, len(o['SlicesShort'])) |
2817 self.assertEqual(k, o['SlicesShort'][0][0]) | |
2818 self.assertEqual(0, o['SlicesShort'][0][1]) | |
2819 self.assertEqual(1, o['SlicesShort'][0][2]) | |
2820 self.assertEqual(j, o['SlicesShort'][1][0]) | |
2821 self.assertEqual(0, o['SlicesShort'][1][1]) | |
2822 self.assertEqual(1, o['SlicesShort'][1][2]) | |
2823 self.assertEqual(i, o['SlicesShort'][2][0]) | |
2824 self.assertEqual(0, o['SlicesShort'][2][1]) | |
2825 self.assertEqual(1, o['SlicesShort'][2][2]) | |
2826 | |
53 | 2827 i = UploadInstance(_REMOTE, 'Beaufix/IM-0001-0001.dcm')['ID'] |
2828 j = UploadInstance(_REMOTE, 'Beaufix/IM-0001-0002.dcm')['ID'] | |
2829 s = DoGet(_REMOTE, '/instances/%s' % i)['ParentSeries'] | |
2830 o = DoGet(_REMOTE, '/series/%s/ordered-slices' % s) | |
2831 | |
2832 self.assertEqual('Sequence', o['Type']) | |
2833 self.assertEqual(2, len(o['Dicom'])) | |
2834 self.assertEqual(2, len(o['Slices'])) | |
2835 self.assertEqual('/instances/%s/file' % i, o['Dicom'][0]) | |
2836 self.assertEqual('/instances/%s/file' % j, o['Dicom'][1]) | |
2837 self.assertEqual('/instances/%s/frames/0' % i, o['Slices'][0]) | |
2838 self.assertEqual('/instances/%s/frames/0' % j, o['Slices'][1]) | |
54
c5f8a6b0d85e
test_incoming_movescu_accession
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
53
diff
changeset
|
2839 |
68 | 2840 self.assertEqual(2, len(o['SlicesShort'])) |
2841 self.assertEqual(i, o['SlicesShort'][0][0]) | |
2842 self.assertEqual(0, o['SlicesShort'][0][1]) | |
2843 self.assertEqual(1, o['SlicesShort'][0][2]) | |
2844 self.assertEqual(j, o['SlicesShort'][1][0]) | |
2845 self.assertEqual(0, o['SlicesShort'][1][1]) | |
2846 self.assertEqual(1, o['SlicesShort'][1][2]) | |
2847 | |
2848 | |
54
c5f8a6b0d85e
test_incoming_movescu_accession
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parents:
53
diff
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|
2849 |
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test_incoming_movescu_accession
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
53
diff
changeset
|
2850 def test_incoming_movescu_accession(self): |
c5f8a6b0d85e
test_incoming_movescu_accession
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
53
diff
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|
2851 UploadInstance(_REMOTE, 'Knee/T1/IM-0001-0001.dcm') |
c5f8a6b0d85e
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diff
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|
2852 |
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diff
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|
2853 # No matching patient, so no job is created |
54
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test_incoming_movescu_accession
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
53
diff
changeset
|
2854 self.assertEqual(0, len(DoGet(_LOCAL, '/patients'))) |
c5f8a6b0d85e
test_incoming_movescu_accession
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parents:
53
diff
changeset
|
2855 CallMoveScu([ '--study', '-k', '0008,0052=STUDY', '-k', 'AccessionNumber=nope' ]) |
c5f8a6b0d85e
test_incoming_movescu_accession
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parents:
53
diff
changeset
|
2856 self.assertEqual(0, len(DoGet(_LOCAL, '/patients'))) |
c5f8a6b0d85e
test_incoming_movescu_accession
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
53
diff
changeset
|
2857 CallMoveScu([ '--study', '-k', '0008,0052=PATIENT', '-k', 'AccessionNumber=A10003245599' ]) |
c5f8a6b0d85e
test_incoming_movescu_accession
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parents:
53
diff
changeset
|
2858 self.assertEqual(0, len(DoGet(_LOCAL, '/patients'))) |
137
412d5f70447e
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diff
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|
2859 |
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diff
changeset
|
2860 # 1 Matching patient, track the job |
138 | 2861 self.assertTrue(MonitorJob(_REMOTE, lambda: CallMoveScu([ |
2862 '--study', | |
2863 '-k', '0008,0052=STUDY', | |
2864 '-k', 'AccessionNumber=A10003245599' | |
2865 ]))) | |
137
412d5f70447e
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parents:
136
diff
changeset
|
2866 |
54
c5f8a6b0d85e
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parents:
53
diff
changeset
|
2867 self.assertEqual(1, len(DoGet(_LOCAL, '/patients'))) |
c5f8a6b0d85e
test_incoming_movescu_accession
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parents:
53
diff
changeset
|
2868 |
55 | 2869 |
2870 def test_dicom_to_json(self): | |
2871 i = UploadInstance(_REMOTE, 'PrivateMDNTags.dcm')['ID'] | |
60
cd3c7f70f139
test backward compatibility with Orthanc 0.9.4
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
59
diff
changeset
|
2872 j = UploadInstance(_REMOTE, 'PrivateTags.dcm')['ID'] |
cd3c7f70f139
test backward compatibility with Orthanc 0.9.4
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parents:
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diff
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|
2873 |
cd3c7f70f139
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Sebastien Jodogne <s.jodogne@gmail.com>
parents:
59
diff
changeset
|
2874 t = DoGet(_REMOTE, '/instances/%s/tags?simplify' % i) |
cd3c7f70f139
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Sebastien Jodogne <s.jodogne@gmail.com>
parents:
59
diff
changeset
|
2875 with open(GetDatabasePath('PrivateMDNTagsSimplify.json'), 'r') as f: |
80
8466dbfcb22b
fix test against dcmtk 3.6.1
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
79
diff
changeset
|
2876 self.assertTrue(CompareTags(t, json.loads(f.read()), [ |
123 | 2877 # Tags for compatibility with DCMTK 3.6.0 |
2878 'RETIRED_OtherPatientIDs', | |
2879 'OtherPatientIDs', | |
2880 'ACR_NEMA_2C_VariablePixelDataGroupLength', | |
80
8466dbfcb22b
fix test against dcmtk 3.6.1
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
79
diff
changeset
|
2881 ])) |
55 | 2882 |
2883 t = DoGet(_REMOTE, '/instances/%s/tags' % i) | |
2884 with open(GetDatabasePath('PrivateMDNTagsFull.json'), 'r') as f: | |
87
4b24faec842b
test_reconstruct_json2 + test_private_tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
86
diff
changeset
|
2885 self.assertTrue(CompareTags(t, json.loads(f.read()), [ |
4b24faec842b
test_reconstruct_json2 + test_private_tags
Sebastien Jodogne <s.jodogne@gmail.com>
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86
diff
changeset
|
2886 ])) |
55 | 2887 |
60
cd3c7f70f139
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diff
changeset
|
2888 t = DoGet(_REMOTE, '/instances/%s/tags?simplify' % j) |
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diff
changeset
|
2889 with open(GetDatabasePath('PrivateTagsSimplify.json'), 'r') as f: |
80
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diff
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|
2890 self.assertTrue(CompareTags(t, json.loads(f.read()), [ |
8466dbfcb22b
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diff
changeset
|
2891 ])) |
60
cd3c7f70f139
test backward compatibility with Orthanc 0.9.4
Sebastien Jodogne <s.jodogne@gmail.com>
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59
diff
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|
2892 |
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test backward compatibility with Orthanc 0.9.4
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59
diff
changeset
|
2893 t = DoGet(_REMOTE, '/instances/%s/tags' % j) |
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diff
changeset
|
2894 with open(GetDatabasePath('PrivateTagsFull.json'), 'r') as f: |
cd3c7f70f139
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diff
changeset
|
2895 a = json.loads(f.read()) |
65
09fc27e0899a
patch for testing windows builds
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
64
diff
changeset
|
2896 aa = json.dumps(a).replace('2e+022', '2e+22') |
09fc27e0899a
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Sebastien Jodogne <s.jodogne@gmail.com>
parents:
64
diff
changeset
|
2897 tt = json.dumps(t).replace('2e+022', '2e+22') |
09fc27e0899a
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Sebastien Jodogne <s.jodogne@gmail.com>
parents:
64
diff
changeset
|
2898 self.assertEqual(aa, tt) |
57 | 2899 |
2900 | |
2901 def test_batch_archive(self): | |
2902 UploadInstance(_REMOTE, 'Knee/T1/IM-0001-0001.dcm') | |
2903 UploadInstance(_REMOTE, 'Knee/T1/IM-0001-0002.dcm') | |
2904 UploadInstance(_REMOTE, 'Knee/T2/IM-0001-0001.dcm') | |
2905 UploadInstance(_REMOTE, 'Knee/T2/IM-0001-0002.dcm') | |
2906 UploadInstance(_REMOTE, 'Brainix/Epi/IM-0001-0001.dcm') | |
2907 UploadInstance(_REMOTE, 'Brainix/Epi/IM-0001-0002.dcm') | |
2908 UploadInstance(_REMOTE, 'Brainix/Flair/IM-0001-0001.dcm') | |
2909 UploadInstance(_REMOTE, 'Brainix/Flair/IM-0001-0002.dcm') | |
2910 | |
2911 s = DoPost(_REMOTE, '/tools/create-archive', [ ]) | |
2912 z = zipfile.ZipFile(StringIO(s), "r") | |
2913 self.assertEqual(0, len(z.namelist())) | |
2914 | |
2915 # One patient | |
2916 s = DoPost(_REMOTE, '/tools/create-archive', [ 'ca29faea-b6a0e17f-067743a1-8b778011-a48b2a17' ]) | |
2917 z = zipfile.ZipFile(StringIO(s), "r") | |
2918 self.assertEqual(4, len(z.namelist())) | |
2919 | |
2920 # One patient + twice its study + one series from other patient | |
2921 s = DoPost(_REMOTE, '/tools/create-archive', [ | |
2922 'ca29faea-b6a0e17f-067743a1-8b778011-a48b2a17', | |
2923 '0a9b3153-2512774b-2d9580de-1fc3dcf6-3bd83918', | |
2924 '1e2c125c-411b8e86-3f4fe68e-a7584dd3-c6da78f0' | |
2925 ]) | |
2926 z = zipfile.ZipFile(StringIO(s), "r") | |
2927 self.assertEqual(6, len(z.namelist())) | |
2928 | |
2929 # One patient + one series + one instance | |
2930 s = DoPost(_REMOTE, '/tools/create-archive', [ | |
2931 'ca29faea-b6a0e17f-067743a1-8b778011-a48b2a17', | |
2932 '1e2c125c-411b8e86-3f4fe68e-a7584dd3-c6da78f0', | |
2933 '1d429ccb-bdcc78a1-7d129d6a-ba4966ed-fe4dbd87' | |
2934 ]) | |
2935 z = zipfile.ZipFile(StringIO(s), "r") | |
2936 self.assertEqual(7, len(z.namelist())) | |
59
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test_decode_brainix_as_jpeg
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parents:
58
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|
2937 |
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test_decode_brainix_as_jpeg
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58
diff
changeset
|
2938 |
84378ada15ab
test_decode_brainix_as_jpeg
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
58
diff
changeset
|
2939 def test_decode_brainix_as_jpeg(self): |
84378ada15ab
test_decode_brainix_as_jpeg
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parents:
58
diff
changeset
|
2940 i = UploadInstance(_REMOTE, 'Brainix/Epi/IM-0001-0001.dcm')['ID'] |
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test_decode_brainix_as_jpeg
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
58
diff
changeset
|
2941 |
84378ada15ab
test_decode_brainix_as_jpeg
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
58
diff
changeset
|
2942 j = GetImage(_REMOTE, '/instances/%s/preview' % i) |
84378ada15ab
test_decode_brainix_as_jpeg
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
58
diff
changeset
|
2943 self.assertEqual('PNG', j.format) |
84378ada15ab
test_decode_brainix_as_jpeg
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
58
diff
changeset
|
2944 self.assertEqual(j.size[0], 256) |
84378ada15ab
test_decode_brainix_as_jpeg
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
58
diff
changeset
|
2945 self.assertEqual(j.size[1], 256) |
84378ada15ab
test_decode_brainix_as_jpeg
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
58
diff
changeset
|
2946 |
84378ada15ab
test_decode_brainix_as_jpeg
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
58
diff
changeset
|
2947 j = GetImage(_REMOTE, '/instances/%s/preview' % i, headers = { 'Accept' : '*/*' }) |
84378ada15ab
test_decode_brainix_as_jpeg
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
58
diff
changeset
|
2948 self.assertEqual('PNG', j.format) |
84378ada15ab
test_decode_brainix_as_jpeg
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
58
diff
changeset
|
2949 |
84378ada15ab
test_decode_brainix_as_jpeg
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
58
diff
changeset
|
2950 j = GetImage(_REMOTE, '/instances/%s/preview' % i, headers = { 'Accept' : 'image/*' }) |
84378ada15ab
test_decode_brainix_as_jpeg
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
58
diff
changeset
|
2951 self.assertEqual('PNG', j.format) |
84378ada15ab
test_decode_brainix_as_jpeg
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
58
diff
changeset
|
2952 |
84378ada15ab
test_decode_brainix_as_jpeg
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
58
diff
changeset
|
2953 j = GetImage(_REMOTE, '/instances/%s/preview' % i, headers = { 'Accept' : 'image/png' }) |
84378ada15ab
test_decode_brainix_as_jpeg
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
58
diff
changeset
|
2954 self.assertEqual('PNG', j.format) |
84378ada15ab
test_decode_brainix_as_jpeg
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
58
diff
changeset
|
2955 |
84378ada15ab
test_decode_brainix_as_jpeg
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
58
diff
changeset
|
2956 j = GetImage(_REMOTE, '/instances/%s/preview' % i, headers = { 'Accept' : 'image/jpeg' }) |
84378ada15ab
test_decode_brainix_as_jpeg
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
58
diff
changeset
|
2957 self.assertEqual('JPEG', j.format) |
84378ada15ab
test_decode_brainix_as_jpeg
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
58
diff
changeset
|
2958 self.assertEqual(j.size[0], 256) |
84378ada15ab
test_decode_brainix_as_jpeg
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
58
diff
changeset
|
2959 self.assertEqual(j.size[1], 256) |
84378ada15ab
test_decode_brainix_as_jpeg
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
58
diff
changeset
|
2960 |
84378ada15ab
test_decode_brainix_as_jpeg
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
58
diff
changeset
|
2961 a = len(DoGet(_REMOTE, '/instances/%s/preview?quality=50' % i, headers = { 'Accept' : 'image/jpeg' })) |
84378ada15ab
test_decode_brainix_as_jpeg
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
58
diff
changeset
|
2962 b = len(DoGet(_REMOTE, '/instances/%s/preview' % i, headers = { 'Accept' : 'image/jpeg' })) |
84378ada15ab
test_decode_brainix_as_jpeg
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
58
diff
changeset
|
2963 self.assertLess(a, b) |
84378ada15ab
test_decode_brainix_as_jpeg
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
58
diff
changeset
|
2964 |
84378ada15ab
test_decode_brainix_as_jpeg
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
58
diff
changeset
|
2965 j = GetImage(_REMOTE, '/instances/%s/image-uint8' % i, headers = { 'Accept' : 'image/jpeg' }) |
84378ada15ab
test_decode_brainix_as_jpeg
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
58
diff
changeset
|
2966 self.assertEqual('JPEG', j.format) |
84378ada15ab
test_decode_brainix_as_jpeg
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
58
diff
changeset
|
2967 |
84378ada15ab
test_decode_brainix_as_jpeg
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
58
diff
changeset
|
2968 # 16bit encoding is not supported with JPEG |
84378ada15ab
test_decode_brainix_as_jpeg
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
58
diff
changeset
|
2969 self.assertRaises(Exception, lambda: GetImage(_REMOTE, '/instances/%s/image-uint16' % i, headers = { 'Accept' : 'image/jpeg' })) |
84378ada15ab
test_decode_brainix_as_jpeg
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
58
diff
changeset
|
2970 self.assertRaises(Exception, lambda: GetImage(_REMOTE, '/instances/%s/image-int16' % i, headers = { 'Accept' : 'image/jpeg' })) |
84378ada15ab
test_decode_brainix_as_jpeg
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
58
diff
changeset
|
2971 |
84378ada15ab
test_decode_brainix_as_jpeg
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
58
diff
changeset
|
2972 # No matching content type |
84378ada15ab
test_decode_brainix_as_jpeg
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
58
diff
changeset
|
2973 self.assertRaises(Exception, lambda: GetImage(_REMOTE, '/instances/%s/preview' % i, headers = { 'Accept' : 'application/pdf' })) |
69
83fd88230097
test_media_encodings
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
68
diff
changeset
|
2974 |
83fd88230097
test_media_encodings
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
68
diff
changeset
|
2975 |
83fd88230097
test_media_encodings
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
68
diff
changeset
|
2976 |
83fd88230097
test_media_encodings
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
68
diff
changeset
|
2977 def test_media_encodings(self): |
83fd88230097
test_media_encodings
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
68
diff
changeset
|
2978 ascii = UploadInstance(_REMOTE, 'Knee/T1/IM-0001-0001.dcm')['ID'] |
83fd88230097
test_media_encodings
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
68
diff
changeset
|
2979 latin1 = UploadInstance(_REMOTE, 'Brainix/Epi/IM-0001-0001.dcm')['ID'] |
83fd88230097
test_media_encodings
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
68
diff
changeset
|
2980 latin2 = UploadInstance(_REMOTE, 'MarekLatin2.dcm')['ID'] |
83fd88230097
test_media_encodings
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
68
diff
changeset
|
2981 |
83fd88230097
test_media_encodings
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
68
diff
changeset
|
2982 tmp = DoPost(_REMOTE, '/tools/create-media', [ascii,latin1,latin2]) |
83fd88230097
test_media_encodings
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
68
diff
changeset
|
2983 z = zipfile.ZipFile(StringIO(tmp), "r") |
83fd88230097
test_media_encodings
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
68
diff
changeset
|
2984 |
83fd88230097
test_media_encodings
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
68
diff
changeset
|
2985 self.assertEqual(4, len(z.namelist())) |
83fd88230097
test_media_encodings
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
68
diff
changeset
|
2986 self.assertTrue('IMAGES/IM0' in z.namelist()) |
83fd88230097
test_media_encodings
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
68
diff
changeset
|
2987 self.assertTrue('IMAGES/IM1' in z.namelist()) |
83fd88230097
test_media_encodings
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
68
diff
changeset
|
2988 self.assertTrue('IMAGES/IM2' in z.namelist()) |
83fd88230097
test_media_encodings
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
68
diff
changeset
|
2989 self.assertTrue('DICOMDIR' in z.namelist()) |
83fd88230097
test_media_encodings
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
68
diff
changeset
|
2990 |
83fd88230097
test_media_encodings
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
68
diff
changeset
|
2991 try: |
83fd88230097
test_media_encodings
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
68
diff
changeset
|
2992 os.remove('/tmp/DICOMDIR') |
83fd88230097
test_media_encodings
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
68
diff
changeset
|
2993 except: |
83fd88230097
test_media_encodings
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
68
diff
changeset
|
2994 # The file does not exist |
83fd88230097
test_media_encodings
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
68
diff
changeset
|
2995 pass |
83fd88230097
test_media_encodings
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
68
diff
changeset
|
2996 |
83fd88230097
test_media_encodings
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
68
diff
changeset
|
2997 z.extract('DICOMDIR', '/tmp') |
83fd88230097
test_media_encodings
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
68
diff
changeset
|
2998 a = subprocess.check_output([ FindExecutable('dciodvfy'), '/tmp/DICOMDIR' ], |
83fd88230097
test_media_encodings
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
68
diff
changeset
|
2999 stderr = subprocess.STDOUT).split('\n') |
83fd88230097
test_media_encodings
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
68
diff
changeset
|
3000 |
83fd88230097
test_media_encodings
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
68
diff
changeset
|
3001 a = subprocess.check_output([ FindExecutable('dcentvfy'), '/tmp/DICOMDIR' ], |
83fd88230097
test_media_encodings
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
68
diff
changeset
|
3002 stderr = subprocess.STDOUT).split('\n') |
83fd88230097
test_media_encodings
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
68
diff
changeset
|
3003 self.assertEqual(1, len(a)) |
83fd88230097
test_media_encodings
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
68
diff
changeset
|
3004 self.assertEqual('', a[0]) |
83fd88230097
test_media_encodings
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
68
diff
changeset
|
3005 |
83fd88230097
test_media_encodings
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
68
diff
changeset
|
3006 a = subprocess.check_output([ FindExecutable('dcm2xml'), '/tmp/DICOMDIR' ]) |
83fd88230097
test_media_encodings
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
68
diff
changeset
|
3007 self.assertTrue(re.search('1.3.46.670589.11.17521.5.0.3124.2008081908590448738', a) != None) |
83fd88230097
test_media_encodings
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
68
diff
changeset
|
3008 self.assertTrue(re.search('1.3.46.670589.11.0.0.11.4.2.0.8743.5.5396.2006120114333648576', a) != None) |
83fd88230097
test_media_encodings
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
68
diff
changeset
|
3009 self.assertTrue(re.search('1.2.826.0.1.3680043.2.1569.1.4.323026757.1700.1399452091.57', a) != None) |
83fd88230097
test_media_encodings
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
68
diff
changeset
|
3010 |
83fd88230097
test_media_encodings
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
68
diff
changeset
|
3011 os.remove('/tmp/DICOMDIR') |
71
48740070cbf1
TDD: tests for ongoing development of counter tags in C-Find
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
70
diff
changeset
|
3012 |
48740070cbf1
TDD: tests for ongoing development of counter tags in C-Find
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
70
diff
changeset
|
3013 |
48740070cbf1
TDD: tests for ongoing development of counter tags in C-Find
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
70
diff
changeset
|
3014 def test_findscu_counters(self): |
48740070cbf1
TDD: tests for ongoing development of counter tags in C-Find
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
70
diff
changeset
|
3015 UploadInstance(_REMOTE, 'Comunix/Ct/IM-0001-0001.dcm') |
48740070cbf1
TDD: tests for ongoing development of counter tags in C-Find
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
70
diff
changeset
|
3016 UploadInstance(_REMOTE, 'Comunix/Pet/IM-0001-0001.dcm') |
48740070cbf1
TDD: tests for ongoing development of counter tags in C-Find
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
70
diff
changeset
|
3017 UploadInstance(_REMOTE, 'Comunix/Pet/IM-0001-0002.dcm') |
48740070cbf1
TDD: tests for ongoing development of counter tags in C-Find
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
70
diff
changeset
|
3018 |
48740070cbf1
TDD: tests for ongoing development of counter tags in C-Find
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
70
diff
changeset
|
3019 i = CallFindScu([ '-k', '0008,0052=PATIENT', '-k', 'NumberOfPatientRelatedStudies' ]) |
48740070cbf1
TDD: tests for ongoing development of counter tags in C-Find
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
70
diff
changeset
|
3020 s = re.findall('\(0020,1200\).*?\[(.*?)\]', i) |
48740070cbf1
TDD: tests for ongoing development of counter tags in C-Find
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
70
diff
changeset
|
3021 self.assertEqual(1, len(s)) |
48740070cbf1
TDD: tests for ongoing development of counter tags in C-Find
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
70
diff
changeset
|
3022 self.assertTrue('1 ' in s) |
48740070cbf1
TDD: tests for ongoing development of counter tags in C-Find
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
70
diff
changeset
|
3023 |
48740070cbf1
TDD: tests for ongoing development of counter tags in C-Find
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
70
diff
changeset
|
3024 i = CallFindScu([ '-k', '0008,0052=PATIENT', '-k', 'NumberOfPatientRelatedSeries' ]) |
48740070cbf1
TDD: tests for ongoing development of counter tags in C-Find
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
70
diff
changeset
|
3025 s = re.findall('\(0020,1202\).*?\[(.*?)\]', i) |
48740070cbf1
TDD: tests for ongoing development of counter tags in C-Find
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
70
diff
changeset
|
3026 self.assertEqual(1, len(s)) |
48740070cbf1
TDD: tests for ongoing development of counter tags in C-Find
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
70
diff
changeset
|
3027 self.assertTrue('2 ' in s) |
48740070cbf1
TDD: tests for ongoing development of counter tags in C-Find
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
70
diff
changeset
|
3028 |
48740070cbf1
TDD: tests for ongoing development of counter tags in C-Find
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
70
diff
changeset
|
3029 i = CallFindScu([ '-k', '0008,0052=PATIENT', '-k', 'NumberOfPatientRelatedInstances' ]) |
48740070cbf1
TDD: tests for ongoing development of counter tags in C-Find
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
70
diff
changeset
|
3030 s = re.findall('\(0020,1204\).*?\[(.*?)\]', i) |
48740070cbf1
TDD: tests for ongoing development of counter tags in C-Find
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
70
diff
changeset
|
3031 self.assertEqual(1, len(s)) |
48740070cbf1
TDD: tests for ongoing development of counter tags in C-Find
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
70
diff
changeset
|
3032 self.assertTrue('3 ' in s) |
48740070cbf1
TDD: tests for ongoing development of counter tags in C-Find
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
70
diff
changeset
|
3033 |
48740070cbf1
TDD: tests for ongoing development of counter tags in C-Find
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
70
diff
changeset
|
3034 i = CallFindScu([ '-k', '0008,0052=STUDY', '-k', 'NumberOfStudyRelatedSeries' ]) |
48740070cbf1
TDD: tests for ongoing development of counter tags in C-Find
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
70
diff
changeset
|
3035 s = re.findall('\(0020,1206\).*?\[(.*?)\]', i) |
48740070cbf1
TDD: tests for ongoing development of counter tags in C-Find
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
70
diff
changeset
|
3036 self.assertEqual(1, len(s)) |
48740070cbf1
TDD: tests for ongoing development of counter tags in C-Find
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
70
diff
changeset
|
3037 self.assertTrue('2 ' in s) |
48740070cbf1
TDD: tests for ongoing development of counter tags in C-Find
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
70
diff
changeset
|
3038 |
48740070cbf1
TDD: tests for ongoing development of counter tags in C-Find
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
70
diff
changeset
|
3039 i = CallFindScu([ '-k', '0008,0052=STUDY', '-k', 'NumberOfStudyRelatedInstances' ]) |
48740070cbf1
TDD: tests for ongoing development of counter tags in C-Find
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
70
diff
changeset
|
3040 s = re.findall('\(0020,1208\).*?\[(.*?)\]', i) |
48740070cbf1
TDD: tests for ongoing development of counter tags in C-Find
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
70
diff
changeset
|
3041 self.assertEqual(1, len(s)) |
48740070cbf1
TDD: tests for ongoing development of counter tags in C-Find
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
70
diff
changeset
|
3042 self.assertTrue('3 ' in s) |
48740070cbf1
TDD: tests for ongoing development of counter tags in C-Find
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
70
diff
changeset
|
3043 |
48740070cbf1
TDD: tests for ongoing development of counter tags in C-Find
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
70
diff
changeset
|
3044 i = CallFindScu([ '-k', '0008,0052=SERIES', '-k', 'NumberOfSeriesRelatedInstances' ]) |
48740070cbf1
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parents:
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diff
changeset
|
3045 s = re.findall('\(0020,1209\).*?\[(.*?)\]', i) |
48740070cbf1
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diff
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|
3046 self.assertEqual(2, len(s)) |
48740070cbf1
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parents:
70
diff
changeset
|
3047 self.assertTrue('1 ' in s) |
48740070cbf1
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parents:
70
diff
changeset
|
3048 self.assertTrue('2 ' in s) |
48740070cbf1
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parents:
70
diff
changeset
|
3049 |
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parents:
70
diff
changeset
|
3050 i = CallFindScu([ '-k', '0008,0052=STUDY', '-k', 'ModalitiesInStudy' ]) |
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parents:
70
diff
changeset
|
3051 s = re.findall('\(0008,0061\).*?\[(.*?)\]', i) |
48740070cbf1
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Sebastien Jodogne <s.jodogne@gmail.com>
parents:
70
diff
changeset
|
3052 self.assertEqual(1, len(s)) |
48740070cbf1
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Sebastien Jodogne <s.jodogne@gmail.com>
parents:
70
diff
changeset
|
3053 t = map(lambda x: x.strip(), s[0].split('\\')) |
48740070cbf1
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Sebastien Jodogne <s.jodogne@gmail.com>
parents:
70
diff
changeset
|
3054 self.assertTrue('PT' in t) |
48740070cbf1
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Sebastien Jodogne <s.jodogne@gmail.com>
parents:
70
diff
changeset
|
3055 self.assertTrue('CT' in t) |
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Sebastien Jodogne <s.jodogne@gmail.com>
parents:
70
diff
changeset
|
3056 |
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parents:
70
diff
changeset
|
3057 i = CallFindScu([ '-k', '0008,0052=STUDY', '-k', 'SOPClassesInStudy' ]) |
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parents:
70
diff
changeset
|
3058 s = re.findall('\(0008,0062\).*?\[(.*?)\]', i) |
48740070cbf1
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parents:
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diff
changeset
|
3059 self.assertEqual(1, len(s)) |
176
48cc188ffb09
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am@osimis.io
parents:
175
diff
changeset
|
3060 t = map(lambda x: x.strip('\x00'), s[0].split('\\')) |
71
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diff
changeset
|
3061 self.assertTrue('1.2.840.10008.5.1.4.1.1.2' in t) |
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parents:
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diff
changeset
|
3062 self.assertTrue('1.2.840.10008.5.1.4.1.1.128' in t) |
48740070cbf1
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parents:
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diff
changeset
|
3063 |
48740070cbf1
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diff
changeset
|
3064 |
78
b89af51797ff
test_decode_transfer_syntax
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
74
diff
changeset
|
3065 def test_decode_transfer_syntax(self): |
b89af51797ff
test_decode_transfer_syntax
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
changeset
|
3066 def Check(t, md5): |
b89af51797ff
test_decode_transfer_syntax
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parents:
74
diff
changeset
|
3067 i = UploadInstance(_REMOTE, 'TransferSyntaxes/%s.dcm' % t)['ID'] |
b89af51797ff
test_decode_transfer_syntax
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parents:
74
diff
changeset
|
3068 |
89
74b7b9aed5f8
test TransferSyntax metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
87
diff
changeset
|
3069 if t != '1.2.840.10008.1.2': # This file has no meta header |
74b7b9aed5f8
test TransferSyntax metadata
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diff
changeset
|
3070 transferSyntax = DoGet(_REMOTE, '/instances/%s/metadata/TransferSyntax' % i) |
74b7b9aed5f8
test TransferSyntax metadata
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diff
changeset
|
3071 self.assertEqual(t, transferSyntax) |
74b7b9aed5f8
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Sebastien Jodogne <s.jodogne@gmail.com>
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diff
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3072 |
78
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diff
changeset
|
3073 if md5 == None: |
b89af51797ff
test_decode_transfer_syntax
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parents:
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diff
changeset
|
3074 self.assertRaises(Exception, lambda: DoGet(_REMOTE, '/instances/%s/preview' % i)) |
b89af51797ff
test_decode_transfer_syntax
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
changeset
|
3075 else: |
b89af51797ff
test_decode_transfer_syntax
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
74
diff
changeset
|
3076 m = ComputeMD5(DoGet(_REMOTE, '/instances/%s/preview' % i)) |
b89af51797ff
test_decode_transfer_syntax
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parents:
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diff
changeset
|
3077 self.assertEqual(m, md5) |
b89af51797ff
test_decode_transfer_syntax
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
74
diff
changeset
|
3078 |
b89af51797ff
test_decode_transfer_syntax
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
74
diff
changeset
|
3079 Check('1.2.840.10008.1.2.1', 'fae08d5415c4c0cd2cdbae4522408631') |
b89af51797ff
test_decode_transfer_syntax
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parents:
74
diff
changeset
|
3080 Check('1.2.840.10008.1.2.2', 'f3d9784768b8feb54d6a50b6d5c37682') |
323 | 3081 Check('1.2.840.10008.1.2.4.50', '496326046974eea718dbc16b997c646b') # TODO - Doesn't work with GDCM 3.0.7 alone |
78
b89af51797ff
test_decode_transfer_syntax
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
74
diff
changeset
|
3082 Check('1.2.840.10008.1.2.4.51', 'ccbe75909fe5c9f7361b48416a53fc41') |
b89af51797ff
test_decode_transfer_syntax
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
74
diff
changeset
|
3083 Check('1.2.840.10008.1.2.4.57', '7bbefe11d976b1be4e568915c6a82fc3') |
b89af51797ff
test_decode_transfer_syntax
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
74
diff
changeset
|
3084 Check('1.2.840.10008.1.2.4.70', '7132cfbc457305b04b59787030c785d2') |
b89af51797ff
test_decode_transfer_syntax
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
74
diff
changeset
|
3085 Check('1.2.840.10008.1.2.4.80', '6ff51ae525d362e0d04f550a64075a0e') |
b89af51797ff
test_decode_transfer_syntax
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
74
diff
changeset
|
3086 Check('1.2.840.10008.1.2.4.81', '801579ae7cbf28e604ea74f2c99fa2ca') |
b89af51797ff
test_decode_transfer_syntax
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
74
diff
changeset
|
3087 Check('1.2.840.10008.1.2.5', '6ff51ae525d362e0d04f550a64075a0e') # RLE, supported since Orthanc 1.0.1 |
b89af51797ff
test_decode_transfer_syntax
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
74
diff
changeset
|
3088 Check('1.2.840.10008.1.2', 'd54aed9f67a100984b42942cc2e9939b') |
299
c2144cf4bd83
HasGdcmPlugin() test
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
293
diff
changeset
|
3089 |
c2144cf4bd83
HasGdcmPlugin() test
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293
diff
changeset
|
3090 # JPEG2k image, not supported without GDCM plugin |
304 | 3091 if not HasGdcmPlugin(_REMOTE): |
299
c2144cf4bd83
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diff
changeset
|
3092 Check('1.2.840.10008.1.2.4.90', None) |
c2144cf4bd83
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changeset
|
3093 Check('1.2.840.10008.1.2.4.91', None) |
79 | 3094 |
3095 | |
3096 def test_raw_frame(self): | |
3097 s = UploadInstance(_REMOTE, 'Issue22.dcm')['ID'] | |
3098 self.assertEqual(24, len(DoGet(_REMOTE, '/instances/%s/frames' % s))) | |
3099 a = DoGet(_REMOTE, '/instances/%s/frames/0/raw' % s) | |
3100 self.assertEqual(512 * 512 * 2, len(a)) | |
3101 self.assertEqual(512 * 512 * 2, len(DoGet(_REMOTE, '/instances/%s/frames/23/raw' % s))) | |
3102 self.assertRaises(Exception, lambda: DoGet(_REMOTE, '/instances/%s/frames/24/raw' % s)) | |
3103 self.assertEqual('1914287dc4d958eca21fdaacfb3482fa', ComputeMD5(a)) | |
3104 | |
3105 s = UploadInstance(_REMOTE, 'Multiframe.dcm')['ID'] | |
3106 self.assertEqual(76, len(DoGet(_REMOTE, '/instances/%s/frames' % s))) | |
3107 self.assertEqual(186274, len(DoGet(_REMOTE, '/instances/%s/frames/0/raw' % s))) | |
3108 self.assertEqual(189424, len(DoGet(_REMOTE, '/instances/%s/frames/75/raw' % s))) | |
3109 self.assertRaises(Exception, lambda: DoGet(_REMOTE, '/instances/%s/frames/76/raw' % s)) | |
3110 im = GetImage(_REMOTE, '/instances/%s/frames/0/raw' % s) | |
3111 self.assertEqual("L", im.mode) | |
3112 self.assertEqual(512, im.size[0]) | |
3113 self.assertEqual(512, im.size[1]) | |
3114 | |
3115 # Test an image with 2 JPEG frames spread over multiple fragments | |
3116 s = UploadInstance(_REMOTE, 'LenaTwiceWithFragments.dcm')['ID'] | |
3117 self.assertEqual(2, len(DoGet(_REMOTE, '/instances/%s/frames' % s))) | |
3118 a = DoGet(_REMOTE, '/instances/%s/frames/0/raw' % s) | |
3119 b = DoGet(_REMOTE, '/instances/%s/frames/1/raw' % s) | |
3120 self.assertEqual(69214, len(a)) | |
3121 self.assertEqual(ComputeMD5(a), ComputeMD5(b)) | |
3122 self.assertRaises(Exception, lambda: DoGet(_REMOTE, '/instances/%s/frames/2/raw' % s)) | |
3123 im = GetImage(_REMOTE, '/instances/%s/frames/0/raw' % s) | |
3124 self.assertEqual("RGB", im.mode) | |
3125 self.assertEqual(512, im.size[0]) | |
3126 self.assertEqual(512, im.size[1]) | |
323 | 3127 im = GetImage(_REMOTE, '/instances/%s/frames/0/preview' % s) # TODO - Doesn't work with GDCM 3.0.7 alone |
79 | 3128 self.assertEqual("RGB", im.mode) |
3129 self.assertEqual(512, im.size[0]) | |
3130 self.assertEqual(512, im.size[1]) | |
81 | 3131 |
3132 | |
3133 | |
3134 def test_rest_movescu(self): | |
3135 self.assertEqual(0, len(DoGet(_REMOTE, '/patients'))) | |
3136 | |
3137 # Upload 4 instances | |
3138 UploadInstance(_REMOTE, 'Brainix/Flair/IM-0001-0001.dcm') | |
3139 UploadInstance(_REMOTE, 'Brainix/Flair/IM-0001-0002.dcm') | |
3140 UploadInstance(_REMOTE, 'Brainix/Epi/IM-0001-0001.dcm') | |
3141 UploadInstance(_REMOTE, 'Knee/T2/IM-0001-0001.dcm') | |
3142 | |
3143 self.assertEqual(2, len(DoGet(_REMOTE, '/patients'))) | |
3144 for p in DoGet(_REMOTE, '/patients'): | |
3145 DoPost(_REMOTE, '/modalities/orthanctest/store', p) | |
3146 DoDelete(_REMOTE, '/patients/%s' % p) | |
3147 | |
3148 self.assertEqual(0, len(DoGet(_REMOTE, '/patients'))) | |
3149 | |
3150 # Upload instance Brainix/Flair/IM-0001-0001.dcm | |
3151 DoPost(_REMOTE, '/modalities/orthanctest/move', { 'Level' : 'Instance', | |
3152 'Resources' : [ | |
3153 { | |
3154 'StudyInstanceUID' : '2.16.840.1.113669.632.20.1211.10000357775', | |
3155 'SeriesInstanceUID' : '1.3.46.670589.11.0.0.11.4.2.0.8743.5.5396.2006120114285654497', | |
3156 'SOPInstanceUID' : '1.3.46.670589.11.0.0.11.4.2.0.8743.5.5396.2006120114314079549', | |
3157 } | |
3158 ]}) | |
3159 | |
3160 # Upload series Brainix/Flair/* | |
3161 self.assertEqual(1, len(DoGet(_REMOTE, '/patients'))) | |
3162 self.assertEqual(1, len(DoGet(_REMOTE, '/studies'))) | |
3163 self.assertEqual(1, len(DoGet(_REMOTE, '/series'))) | |
3164 self.assertEqual(1, len(DoGet(_REMOTE, '/instances'))) | |
3165 | |
3166 DoPost(_REMOTE, '/modalities/orthanctest/move', { 'Level' : 'Series', | |
3167 'Resources' : [ | |
3168 { | |
3169 'StudyInstanceUID' : '2.16.840.1.113669.632.20.1211.10000357775', | |
3170 'SeriesInstanceUID' : '1.3.46.670589.11.0.0.11.4.2.0.8743.5.5396.2006120114285654497', | |
3171 } | |
3172 ]}) | |
3173 self.assertEqual(1, len(DoGet(_REMOTE, '/patients'))) | |
3174 self.assertEqual(1, len(DoGet(_REMOTE, '/studies'))) | |
3175 self.assertEqual(1, len(DoGet(_REMOTE, '/series'))) | |
3176 self.assertEqual(2, len(DoGet(_REMOTE, '/instances'))) | |
3177 | |
3178 # Upload series Brainix/Epi/* | |
3179 DoPost(_REMOTE, '/modalities/orthanctest/move', { 'Level' : 'Series', | |
3180 'Resources' : [ | |
3181 { | |
3182 'StudyInstanceUID' : '2.16.840.1.113669.632.20.1211.10000357775', | |
3183 'SeriesInstanceUID' : '1.3.46.670589.11.0.0.11.4.2.0.8743.5.5396.2006120114314125550', | |
3184 } | |
3185 ]}) | |
3186 self.assertEqual(1, len(DoGet(_REMOTE, '/patients'))) | |
3187 self.assertEqual(1, len(DoGet(_REMOTE, '/studies'))) | |
3188 self.assertEqual(2, len(DoGet(_REMOTE, '/series'))) | |
3189 self.assertEqual(3, len(DoGet(_REMOTE, '/instances'))) | |
3190 | |
3191 # Upload study Knee/* | |
3192 DoPost(_REMOTE, '/modalities/orthanctest/move', { 'Level' : 'Study', | |
3193 'Resources' : [ | |
3194 { | |
3195 'StudyInstanceUID' : '2.16.840.1.113669.632.20.121711.10000160881', | |
3196 } | |
3197 ]}) | |
3198 self.assertEqual(2, len(DoGet(_REMOTE, '/patients'))) | |
3199 self.assertEqual(2, len(DoGet(_REMOTE, '/studies'))) | |
3200 self.assertEqual(3, len(DoGet(_REMOTE, '/series'))) | |
3201 self.assertEqual(4, len(DoGet(_REMOTE, '/instances'))) | |
3202 | |
3203 # Reset | |
3204 for p in DoGet(_REMOTE, '/patients'): | |
3205 DoDelete(_REMOTE, '/patients/%s' % p) | |
3206 | |
3207 self.assertEqual(0, len(DoGet(_REMOTE, '/patients'))) | |
3208 | |
3209 | |
3210 # Upload all at once | |
3211 DoPost(_REMOTE, '/modalities/orthanctest/move', { 'Level' : 'Study', | |
3212 'Resources' : [ | |
3213 { | |
3214 'StudyInstanceUID' : '2.16.840.1.113669.632.20.121711.10000160881', | |
3215 }, | |
3216 { | |
3217 'StudyInstanceUID' : '2.16.840.1.113669.632.20.1211.10000357775', | |
3218 } | |
3219 ]}) | |
3220 self.assertEqual(2, len(DoGet(_REMOTE, '/patients'))) | |
3221 self.assertEqual(2, len(DoGet(_REMOTE, '/studies'))) | |
3222 self.assertEqual(3, len(DoGet(_REMOTE, '/series'))) | |
3223 self.assertEqual(4, len(DoGet(_REMOTE, '/instances'))) | |
3224 | |
86
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diff
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|
3225 |
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diff
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|
3226 |
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parents:
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diff
changeset
|
3227 def test_reconstruct_json(self): |
0401ef51f5c1
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parents:
83
diff
changeset
|
3228 self.assertEqual(0, len(DoGet(_REMOTE, '/patients'))) |
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diff
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|
3229 |
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diff
changeset
|
3230 instance = UploadInstance(_REMOTE, 'DummyCT.dcm')['ID'] |
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Sebastien Jodogne <s.jodogne@gmail.com>
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diff
changeset
|
3231 first = DoGet(_REMOTE, '/instances/%s/tags' % instance) |
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diff
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|
3232 |
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parents:
83
diff
changeset
|
3233 self.assertEqual('TWINOW', first['0008,1010']['Value']) |
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Sebastien Jodogne <s.jodogne@gmail.com>
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diff
changeset
|
3234 self.assertEqual(2, len(DoGet(_REMOTE, '/instances/%s/attachments' % instance))) |
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diff
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|
3235 |
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parents:
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diff
changeset
|
3236 # Cannot delete the "DICOM" attachment |
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Sebastien Jodogne <s.jodogne@gmail.com>
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diff
changeset
|
3237 self.assertRaises(Exception, lambda: DoDelete(_REMOTE, '/instances/%s/attachments/dicom' % instance)) |
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Sebastien Jodogne <s.jodogne@gmail.com>
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|
3238 |
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parents:
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diff
changeset
|
3239 # Can delete the "DICOM as JSON" attachment |
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Sebastien Jodogne <s.jodogne@gmail.com>
parents:
83
diff
changeset
|
3240 r = DoDelete(_REMOTE, '/instances/%s/attachments/dicom-as-json' % instance) |
0401ef51f5c1
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Sebastien Jodogne <s.jodogne@gmail.com>
parents:
83
diff
changeset
|
3241 self.assertTrue(type(r) is dict and len(r) == 0) |
0401ef51f5c1
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|
3242 |
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diff
changeset
|
3243 # Only the "DICOM" attachment subsists |
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changeset
|
3244 self.assertEqual(1, len(DoGet(_REMOTE, '/instances/%s/attachments' % instance))) |
0401ef51f5c1
test_reconstruct_json
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
83
diff
changeset
|
3245 |
0401ef51f5c1
test_reconstruct_json
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
83
diff
changeset
|
3246 # Cannot manually reconstruct the "DICOM as JSON" attachment |
0401ef51f5c1
test_reconstruct_json
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
83
diff
changeset
|
3247 self.assertRaises(Exception, lambda: DoPut(_REMOTE, '/patients/%s/attachments/dicom-as-json' % patient, 'hello')) |
0401ef51f5c1
test_reconstruct_json
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
83
diff
changeset
|
3248 |
0401ef51f5c1
test_reconstruct_json
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
83
diff
changeset
|
3249 # Transparently reconstruct the "DICOM as JSON" attachment |
0401ef51f5c1
test_reconstruct_json
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
83
diff
changeset
|
3250 self.assertRaises(Exception, lambda: DoGet(_REMOTE, '/instances/%s/attachments/dicom-as-json' % instance)) |
0401ef51f5c1
test_reconstruct_json
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
83
diff
changeset
|
3251 second = DoGet(_REMOTE, '/instances/%s/tags' % instance) |
0401ef51f5c1
test_reconstruct_json
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
83
diff
changeset
|
3252 self.assertEqual(2, len(DoGet(_REMOTE, '/instances/%s/attachments' % instance))) |
0401ef51f5c1
test_reconstruct_json
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
83
diff
changeset
|
3253 |
0401ef51f5c1
test_reconstruct_json
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
83
diff
changeset
|
3254 third = DoGet(_REMOTE, '/instances/%s/attachments/dicom-as-json/data' % instance) |
0401ef51f5c1
test_reconstruct_json
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
83
diff
changeset
|
3255 self.assertEqual(str(first), str(second)) |
0401ef51f5c1
test_reconstruct_json
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
83
diff
changeset
|
3256 self.assertEqual(str(first), str(third)) |
87
4b24faec842b
test_reconstruct_json2 + test_private_tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
86
diff
changeset
|
3257 |
4b24faec842b
test_reconstruct_json2 + test_private_tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
86
diff
changeset
|
3258 |
4b24faec842b
test_reconstruct_json2 + test_private_tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
86
diff
changeset
|
3259 def test_reconstruct_json2(self): |
4b24faec842b
test_reconstruct_json2 + test_private_tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
86
diff
changeset
|
3260 self.assertEqual(0, len(DoGet(_REMOTE, '/patients'))) |
4b24faec842b
test_reconstruct_json2 + test_private_tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
86
diff
changeset
|
3261 |
4b24faec842b
test_reconstruct_json2 + test_private_tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
86
diff
changeset
|
3262 a = UploadInstance(_REMOTE, 'Brainix/Flair/IM-0001-0001.dcm')['ID'] |
4b24faec842b
test_reconstruct_json2 + test_private_tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
86
diff
changeset
|
3263 b = UploadInstance(_REMOTE, 'Knee/T2/IM-0001-0001.dcm')['ID'] |
4b24faec842b
test_reconstruct_json2 + test_private_tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
86
diff
changeset
|
3264 |
4b24faec842b
test_reconstruct_json2 + test_private_tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
86
diff
changeset
|
3265 self.assertEqual('BRAINIX', DoGet(_REMOTE, '/instances/%s/tags?simplify' % a)['PatientName']) |
4b24faec842b
test_reconstruct_json2 + test_private_tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
86
diff
changeset
|
3266 self.assertEqual('KNEE', DoGet(_REMOTE, '/instances/%s/tags?simplify' % b)['PatientName']) |
4b24faec842b
test_reconstruct_json2 + test_private_tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
86
diff
changeset
|
3267 |
4b24faec842b
test_reconstruct_json2 + test_private_tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
86
diff
changeset
|
3268 self.assertEqual(2, len(DoGet(_REMOTE, '/instances/%s/attachments' % a))) |
4b24faec842b
test_reconstruct_json2 + test_private_tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
86
diff
changeset
|
3269 self.assertEqual(2, len(DoGet(_REMOTE, '/instances/%s/attachments' % b))) |
4b24faec842b
test_reconstruct_json2 + test_private_tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
86
diff
changeset
|
3270 |
4b24faec842b
test_reconstruct_json2 + test_private_tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
86
diff
changeset
|
3271 DoPost(_REMOTE, '/tools/invalidate-tags', '', 'text/plain') |
4b24faec842b
test_reconstruct_json2 + test_private_tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
86
diff
changeset
|
3272 |
4b24faec842b
test_reconstruct_json2 + test_private_tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
86
diff
changeset
|
3273 self.assertEqual(1, len(DoGet(_REMOTE, '/instances/%s/attachments' % a))) |
4b24faec842b
test_reconstruct_json2 + test_private_tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
86
diff
changeset
|
3274 self.assertEqual(1, len(DoGet(_REMOTE, '/instances/%s/attachments' % b))) |
4b24faec842b
test_reconstruct_json2 + test_private_tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
86
diff
changeset
|
3275 |
4b24faec842b
test_reconstruct_json2 + test_private_tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
86
diff
changeset
|
3276 self.assertEqual('BRAINIX', DoGet(_REMOTE, '/instances/%s/tags?simplify' % a)['PatientName']) |
4b24faec842b
test_reconstruct_json2 + test_private_tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
86
diff
changeset
|
3277 self.assertEqual('KNEE', DoGet(_REMOTE, '/instances/%s/tags?simplify' % b)['PatientName']) |
4b24faec842b
test_reconstruct_json2 + test_private_tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
86
diff
changeset
|
3278 |
4b24faec842b
test_reconstruct_json2 + test_private_tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
86
diff
changeset
|
3279 self.assertEqual(2, len(DoGet(_REMOTE, '/instances/%s/attachments' % a))) |
4b24faec842b
test_reconstruct_json2 + test_private_tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
86
diff
changeset
|
3280 self.assertEqual(2, len(DoGet(_REMOTE, '/instances/%s/attachments' % b))) |
4b24faec842b
test_reconstruct_json2 + test_private_tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
86
diff
changeset
|
3281 |
4b24faec842b
test_reconstruct_json2 + test_private_tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
86
diff
changeset
|
3282 |
4b24faec842b
test_reconstruct_json2 + test_private_tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
86
diff
changeset
|
3283 def test_private_tags(self): |
4b24faec842b
test_reconstruct_json2 + test_private_tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
86
diff
changeset
|
3284 i = UploadInstance(_REMOTE, 'PrivateMDNTags.dcm')['ID'] |
4b24faec842b
test_reconstruct_json2 + test_private_tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
86
diff
changeset
|
3285 t = DoGet(_REMOTE, '/instances/%s/tags?simplify' % i) |
4b24faec842b
test_reconstruct_json2 + test_private_tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
86
diff
changeset
|
3286 self.assertEqual('1.2.840.113704.1.111.6320.1342451261.21', t['PET-CT Multi Modality Name']) |
4b24faec842b
test_reconstruct_json2 + test_private_tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
86
diff
changeset
|
3287 self.assertEqual('p37s0_na_ctac.img', t['Original Image Filename']) |
4b24faec842b
test_reconstruct_json2 + test_private_tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
86
diff
changeset
|
3288 |
92
dbcbffb889da
test_findscu_encoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
89
diff
changeset
|
3289 |
dbcbffb889da
test_findscu_encoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
89
diff
changeset
|
3290 def test_findscu_encoding(self): |
dbcbffb889da
test_findscu_encoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
89
diff
changeset
|
3291 # Check out ../Database/Encodings/Generate.sh |
dbcbffb889da
test_findscu_encoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
89
diff
changeset
|
3292 TEST = u'Test-éüäöòДΘĝדصķћ๛ネİ' |
dbcbffb889da
test_findscu_encoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
89
diff
changeset
|
3293 ENCODINGS = { |
dbcbffb889da
test_findscu_encoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
89
diff
changeset
|
3294 'Arabic' : [ 'ISO_IR 127' ], |
dbcbffb889da
test_findscu_encoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
89
diff
changeset
|
3295 'Ascii' : [ 'ISO_IR 6' ], # More accurately, ISO 646 |
dbcbffb889da
test_findscu_encoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
89
diff
changeset
|
3296 'Cyrillic' : [ 'ISO_IR 144' ], |
dbcbffb889da
test_findscu_encoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
89
diff
changeset
|
3297 'Greek' : [ 'ISO_IR 126' ], |
dbcbffb889da
test_findscu_encoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
89
diff
changeset
|
3298 'Hebrew' : [ 'ISO_IR 138' ], |
dbcbffb889da
test_findscu_encoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
89
diff
changeset
|
3299 'Japanese' : [ 'ISO_IR 13', 'shift-jis' ], |
dbcbffb889da
test_findscu_encoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
89
diff
changeset
|
3300 'Latin1' : [ 'ISO_IR 100' ], |
dbcbffb889da
test_findscu_encoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
89
diff
changeset
|
3301 'Latin2' : [ 'ISO_IR 101' ], |
dbcbffb889da
test_findscu_encoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
89
diff
changeset
|
3302 'Latin3' : [ 'ISO_IR 109' ], |
dbcbffb889da
test_findscu_encoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
89
diff
changeset
|
3303 'Latin4' : [ 'ISO_IR 110' ], |
dbcbffb889da
test_findscu_encoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
89
diff
changeset
|
3304 'Latin5' : [ 'ISO_IR 148' ], |
dbcbffb889da
test_findscu_encoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
89
diff
changeset
|
3305 'Thai' : [ 'ISO_IR 166', 'tis-620' ], |
dbcbffb889da
test_findscu_encoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
89
diff
changeset
|
3306 'Utf8' : [ 'ISO_IR 192' ], |
dbcbffb889da
test_findscu_encoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
89
diff
changeset
|
3307 } |
dbcbffb889da
test_findscu_encoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
89
diff
changeset
|
3308 |
dbcbffb889da
test_findscu_encoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
89
diff
changeset
|
3309 for name in ENCODINGS.iterkeys(): |
dbcbffb889da
test_findscu_encoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
89
diff
changeset
|
3310 if len(ENCODINGS[name]) == 1: |
dbcbffb889da
test_findscu_encoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
89
diff
changeset
|
3311 ENCODINGS[name].append(name.lower()) |
dbcbffb889da
test_findscu_encoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
89
diff
changeset
|
3312 |
dbcbffb889da
test_findscu_encoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
89
diff
changeset
|
3313 UploadInstance(_REMOTE, 'Encodings/Lena-utf8.dcm') |
dbcbffb889da
test_findscu_encoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
89
diff
changeset
|
3314 |
dbcbffb889da
test_findscu_encoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
89
diff
changeset
|
3315 for name in ENCODINGS.iterkeys(): |
dbcbffb889da
test_findscu_encoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
89
diff
changeset
|
3316 self.assertEqual(name, DoPut(_REMOTE, '/tools/default-encoding', name)) |
dbcbffb889da
test_findscu_encoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
89
diff
changeset
|
3317 self.assertEqual(name, DoGet(_REMOTE, '/tools/default-encoding')) |
dbcbffb889da
test_findscu_encoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
89
diff
changeset
|
3318 |
dbcbffb889da
test_findscu_encoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
89
diff
changeset
|
3319 i = CallFindScu([ '-k', '0008,0052=STUDY', |
dbcbffb889da
test_findscu_encoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
89
diff
changeset
|
3320 '-k', 'SpecificCharacterSet', |
dbcbffb889da
test_findscu_encoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
89
diff
changeset
|
3321 '-k', 'PatientName' ]) |
dbcbffb889da
test_findscu_encoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
89
diff
changeset
|
3322 |
dbcbffb889da
test_findscu_encoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
89
diff
changeset
|
3323 characterSet = re.findall('\(0008,0005\).*?\[(.*?)\]', i) |
dbcbffb889da
test_findscu_encoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
89
diff
changeset
|
3324 self.assertEqual(1, len(characterSet)) |
dbcbffb889da
test_findscu_encoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
89
diff
changeset
|
3325 self.assertEqual(ENCODINGS[name][0], characterSet[0].strip()) |
dbcbffb889da
test_findscu_encoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
89
diff
changeset
|
3326 |
dbcbffb889da
test_findscu_encoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
89
diff
changeset
|
3327 patientName = re.findall('\(0010,0010\).*?\[(.*?)\]', i) |
dbcbffb889da
test_findscu_encoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
89
diff
changeset
|
3328 self.assertEqual(1, len(patientName)) |
dbcbffb889da
test_findscu_encoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
89
diff
changeset
|
3329 |
dbcbffb889da
test_findscu_encoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
89
diff
changeset
|
3330 expected = TEST.encode(ENCODINGS[name][1], 'ignore') |
dbcbffb889da
test_findscu_encoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
89
diff
changeset
|
3331 self.assertEqual(expected, patientName[0].strip()) |
dbcbffb889da
test_findscu_encoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
89
diff
changeset
|
3332 |
dbcbffb889da
test_findscu_encoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
89
diff
changeset
|
3333 |
dbcbffb889da
test_findscu_encoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
89
diff
changeset
|
3334 #for master in ENCODINGS: |
dbcbffb889da
test_findscu_encoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
89
diff
changeset
|
3335 for master in [ 'Latin1', 'Utf8', 'Cyrillic' ]: # Shortcut to speedup tests |
dbcbffb889da
test_findscu_encoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
89
diff
changeset
|
3336 self.assertEqual(master, DoPut(_REMOTE, '/tools/default-encoding', master)) |
dbcbffb889da
test_findscu_encoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
89
diff
changeset
|
3337 self.assertEqual(master, DoGet(_REMOTE, '/tools/default-encoding')) |
dbcbffb889da
test_findscu_encoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
89
diff
changeset
|
3338 |
dbcbffb889da
test_findscu_encoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
89
diff
changeset
|
3339 for name in ENCODINGS: |
dbcbffb889da
test_findscu_encoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
89
diff
changeset
|
3340 DropOrthanc(_REMOTE) |
dbcbffb889da
test_findscu_encoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
89
diff
changeset
|
3341 UploadInstance(_REMOTE, 'Encodings/Lena-%s.dcm' % ENCODINGS[name][1]) |
dbcbffb889da
test_findscu_encoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
89
diff
changeset
|
3342 |
dbcbffb889da
test_findscu_encoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
89
diff
changeset
|
3343 i = CallFindScu([ '-k', '0008,0052=STUDY', |
dbcbffb889da
test_findscu_encoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
89
diff
changeset
|
3344 '-k', 'PatientID', |
dbcbffb889da
test_findscu_encoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
89
diff
changeset
|
3345 '-k', 'SpecificCharacterSet', |
dbcbffb889da
test_findscu_encoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
89
diff
changeset
|
3346 '-k', 'PatientName' ]) |
dbcbffb889da
test_findscu_encoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
89
diff
changeset
|
3347 i = i.decode(ENCODINGS[master][1]) |
dbcbffb889da
test_findscu_encoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
89
diff
changeset
|
3348 |
dbcbffb889da
test_findscu_encoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
89
diff
changeset
|
3349 characterSet = re.findall('\(0008,0005\).*?\[(.*?)\]', i) |
dbcbffb889da
test_findscu_encoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
89
diff
changeset
|
3350 self.assertEqual(1, len(characterSet)) |
dbcbffb889da
test_findscu_encoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
89
diff
changeset
|
3351 self.assertEqual(ENCODINGS[master][0], characterSet[0].strip()) |
dbcbffb889da
test_findscu_encoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
89
diff
changeset
|
3352 |
dbcbffb889da
test_findscu_encoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
89
diff
changeset
|
3353 patientId = re.findall('\(0010,0020\).*?\[(.*?)\]', i) |
dbcbffb889da
test_findscu_encoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
89
diff
changeset
|
3354 self.assertEqual(1, len(patientId)) |
dbcbffb889da
test_findscu_encoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
89
diff
changeset
|
3355 self.assertEqual(ENCODINGS[name][1], patientId[0].strip()) |
dbcbffb889da
test_findscu_encoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
89
diff
changeset
|
3356 |
dbcbffb889da
test_findscu_encoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
89
diff
changeset
|
3357 patientName = re.findall('\(0010,0010\).*?\[(.*?)\]', i) |
dbcbffb889da
test_findscu_encoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
89
diff
changeset
|
3358 self.assertEqual(1, len(patientName)) |
dbcbffb889da
test_findscu_encoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
89
diff
changeset
|
3359 |
dbcbffb889da
test_findscu_encoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
89
diff
changeset
|
3360 tmp = ENCODINGS[name][1] |
dbcbffb889da
test_findscu_encoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
89
diff
changeset
|
3361 expected = TEST.encode(tmp, 'ignore').decode(tmp) |
dbcbffb889da
test_findscu_encoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
89
diff
changeset
|
3362 tmp = ENCODINGS[master][1] |
dbcbffb889da
test_findscu_encoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
89
diff
changeset
|
3363 expected = expected.encode(tmp, 'ignore').decode(tmp) |
dbcbffb889da
test_findscu_encoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
89
diff
changeset
|
3364 |
dbcbffb889da
test_findscu_encoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
89
diff
changeset
|
3365 self.assertEqual(expected, patientName[0].strip()) |
dbcbffb889da
test_findscu_encoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
89
diff
changeset
|
3366 |
dbcbffb889da
test_findscu_encoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
89
diff
changeset
|
3367 |
dbcbffb889da
test_findscu_encoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
89
diff
changeset
|
3368 a = DoPost(_REMOTE, '/tools/find', { 'Expand' : True, |
dbcbffb889da
test_findscu_encoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
89
diff
changeset
|
3369 'Level' : 'Study', |
dbcbffb889da
test_findscu_encoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
89
diff
changeset
|
3370 'Query' : { }}) |
dbcbffb889da
test_findscu_encoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
89
diff
changeset
|
3371 self.assertEqual(1, len(a)) |
dbcbffb889da
test_findscu_encoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
89
diff
changeset
|
3372 |
dbcbffb889da
test_findscu_encoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
89
diff
changeset
|
3373 tmp = ENCODINGS[name][1] |
dbcbffb889da
test_findscu_encoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
89
diff
changeset
|
3374 self.assertEqual(TEST.encode(tmp, 'ignore').decode(tmp), a[0]["PatientMainDicomTags"]["PatientName"]) |
96
272d1229cb49
test reconstruction of tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
95
diff
changeset
|
3375 |
314 | 3376 # Back to UTF-8 |
3377 self.assertEqual('Utf8', DoPut(_REMOTE, '/tools/default-encoding', 'Utf8')) | |
3378 | |
96
272d1229cb49
test reconstruction of tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
95
diff
changeset
|
3379 |
272d1229cb49
test reconstruction of tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
95
diff
changeset
|
3380 def test_reconstruct(self): |
272d1229cb49
test reconstruction of tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
95
diff
changeset
|
3381 def CompareMainDicomTag(expected, instance, level, tag): |
272d1229cb49
test reconstruction of tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
95
diff
changeset
|
3382 self.assertEqual(expected, DoGet(_REMOTE, '/instances/%s/%s' % (instance, level))['MainDicomTags'][tag].strip()) |
272d1229cb49
test reconstruction of tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
95
diff
changeset
|
3383 |
272d1229cb49
test reconstruction of tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
95
diff
changeset
|
3384 a = UploadInstance(_REMOTE, 'DummyCT.dcm')['ID'] |
272d1229cb49
test reconstruction of tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
95
diff
changeset
|
3385 |
272d1229cb49
test reconstruction of tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
95
diff
changeset
|
3386 studies = DoGet(_REMOTE, '/studies/') |
272d1229cb49
test reconstruction of tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
95
diff
changeset
|
3387 self.assertEqual(1, len(DoGet(_REMOTE, '/patients/'))) |
272d1229cb49
test reconstruction of tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
95
diff
changeset
|
3388 self.assertEqual(1, len(studies)) |
272d1229cb49
test reconstruction of tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
95
diff
changeset
|
3389 self.assertEqual(1, len(DoGet(_REMOTE, '/series/'))) |
272d1229cb49
test reconstruction of tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
95
diff
changeset
|
3390 self.assertEqual(1, len(DoGet(_REMOTE, '/instances/'))) |
272d1229cb49
test reconstruction of tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
95
diff
changeset
|
3391 |
272d1229cb49
test reconstruction of tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
95
diff
changeset
|
3392 modified = DoPost(_REMOTE, '/studies/%s/modify' % studies[0], { |
272d1229cb49
test reconstruction of tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
95
diff
changeset
|
3393 "Replace" : { |
272d1229cb49
test reconstruction of tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
95
diff
changeset
|
3394 "StudyDescription" : "hello", |
272d1229cb49
test reconstruction of tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
95
diff
changeset
|
3395 "SeriesDescription" : "world", |
272d1229cb49
test reconstruction of tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
95
diff
changeset
|
3396 "SOPClassUID" : "test", |
272d1229cb49
test reconstruction of tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
95
diff
changeset
|
3397 "SOPInstanceUID" : "myid", |
272d1229cb49
test reconstruction of tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
95
diff
changeset
|
3398 }, |
119 | 3399 "Keep" : [ "StudyInstanceUID", "SeriesInstanceUID" ], |
3400 "Force" : True | |
96
272d1229cb49
test reconstruction of tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
95
diff
changeset
|
3401 }) |
272d1229cb49
test reconstruction of tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
95
diff
changeset
|
3402 |
272d1229cb49
test reconstruction of tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
95
diff
changeset
|
3403 instances = DoGet(_REMOTE, '/instances/') |
272d1229cb49
test reconstruction of tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
95
diff
changeset
|
3404 self.assertEqual(1, len(DoGet(_REMOTE, '/patients/'))) |
272d1229cb49
test reconstruction of tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
95
diff
changeset
|
3405 self.assertEqual(1, len(DoGet(_REMOTE, '/studies/'))) |
272d1229cb49
test reconstruction of tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
95
diff
changeset
|
3406 self.assertEqual(1, len(DoGet(_REMOTE, '/series/'))) |
272d1229cb49
test reconstruction of tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
95
diff
changeset
|
3407 self.assertEqual(2, len(instances)) |
272d1229cb49
test reconstruction of tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
95
diff
changeset
|
3408 |
272d1229cb49
test reconstruction of tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
95
diff
changeset
|
3409 b = instances[0] if instances[1] == a else instances[1] |
272d1229cb49
test reconstruction of tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
95
diff
changeset
|
3410 |
272d1229cb49
test reconstruction of tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
95
diff
changeset
|
3411 CompareMainDicomTag('Knee (R)', a, 'study', 'StudyDescription') |
272d1229cb49
test reconstruction of tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
95
diff
changeset
|
3412 CompareMainDicomTag('AX. FSE PD', a, 'series', 'SeriesDescription') |
272d1229cb49
test reconstruction of tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
95
diff
changeset
|
3413 CompareMainDicomTag('1.2.840.113619.2.176.2025.1499492.7040.1171286242.109', a, '', 'SOPInstanceUID') |
272d1229cb49
test reconstruction of tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
95
diff
changeset
|
3414 CompareMainDicomTag('myid', b, '', 'SOPInstanceUID') |
272d1229cb49
test reconstruction of tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
95
diff
changeset
|
3415 self.assertEqual('1.2.840.10008.5.1.4.1.1.4', DoGet(_REMOTE, '/instances/%s/metadata/SopClassUid' % a).strip()) |
272d1229cb49
test reconstruction of tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
95
diff
changeset
|
3416 self.assertEqual('test', DoGet(_REMOTE, '/instances/%s/metadata/SopClassUid' % b).strip()) |
272d1229cb49
test reconstruction of tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
95
diff
changeset
|
3417 |
272d1229cb49
test reconstruction of tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
95
diff
changeset
|
3418 DoPost(_REMOTE, '/instances/%s/reconstruct' % b, {}) |
272d1229cb49
test reconstruction of tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
95
diff
changeset
|
3419 |
272d1229cb49
test reconstruction of tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
95
diff
changeset
|
3420 CompareMainDicomTag('hello', a, 'study', 'StudyDescription') |
272d1229cb49
test reconstruction of tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
95
diff
changeset
|
3421 CompareMainDicomTag('world', a, 'series', 'SeriesDescription') |
272d1229cb49
test reconstruction of tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
95
diff
changeset
|
3422 CompareMainDicomTag('1.2.840.113619.2.176.2025.1499492.7040.1171286242.109', a, '', 'SOPInstanceUID') |
102 | 3423 |
104 | 3424 def test_httpClient_lua(self): |
3425 with open(GetDatabasePath('Lua/HttpClient.lua'), 'r') as f: | |
102 | 3426 result = DoPost(_REMOTE, '/tools/execute-script', f.read(), 'application/lua') |
3427 | |
3428 self.assertIn('OK', result) | |
107
fddb35f7289d
test_bitbucket_issue_44
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
104
diff
changeset
|
3429 |
fddb35f7289d
test_bitbucket_issue_44
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
104
diff
changeset
|
3430 |
fddb35f7289d
test_bitbucket_issue_44
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
104
diff
changeset
|
3431 def test_bitbucket_issue_44(self): |
319 | 3432 # https://bugs.orthanc-server.com/show_bug.cgi?id=44 |
107
fddb35f7289d
test_bitbucket_issue_44
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
104
diff
changeset
|
3433 UploadInstance(_REMOTE, 'Issue44/Monochrome1.dcm') |
fddb35f7289d
test_bitbucket_issue_44
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
104
diff
changeset
|
3434 UploadInstance(_REMOTE, 'Issue44/Monochrome2.dcm') |
fddb35f7289d
test_bitbucket_issue_44
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
104
diff
changeset
|
3435 |
fddb35f7289d
test_bitbucket_issue_44
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
104
diff
changeset
|
3436 # dcmcjpeg +ua +eb Monochrome1.dcm Monochrome1-Jpeg.dcm |
fddb35f7289d
test_bitbucket_issue_44
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
104
diff
changeset
|
3437 UploadInstance(_REMOTE, 'Issue44/Monochrome1-Jpeg.dcm') |
fddb35f7289d
test_bitbucket_issue_44
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
104
diff
changeset
|
3438 |
fddb35f7289d
test_bitbucket_issue_44
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
104
diff
changeset
|
3439 # dcmcjpeg +ua Monochrome1.dcm Monochrome1-JpegLS.dcm |
fddb35f7289d
test_bitbucket_issue_44
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
104
diff
changeset
|
3440 UploadInstance(_REMOTE, 'Issue44/Monochrome1-JpegLS.dcm') |
fddb35f7289d
test_bitbucket_issue_44
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
104
diff
changeset
|
3441 |
fddb35f7289d
test_bitbucket_issue_44
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
104
diff
changeset
|
3442 monochrome1 = 'bcdd600a-a6a9c522-5f0a6e84-8657c9f3-b76e59b7' |
fddb35f7289d
test_bitbucket_issue_44
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
104
diff
changeset
|
3443 monochrome1_jpeg = '9df82121-208a2da8-0038674a-3d7a773b-b7008cd2' |
fddb35f7289d
test_bitbucket_issue_44
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
104
diff
changeset
|
3444 monochrome1_jpegls = '0486d1a2-9165573f-b1976b20-e927b016-6b8d67ab' |
fddb35f7289d
test_bitbucket_issue_44
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
104
diff
changeset
|
3445 monochrome2 = 'f00947b7-f61f7164-c93414d1-c6fbda6a-9e92ed20' |
fddb35f7289d
test_bitbucket_issue_44
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
104
diff
changeset
|
3446 |
fddb35f7289d
test_bitbucket_issue_44
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
104
diff
changeset
|
3447 for i in [ monochrome1, monochrome1_jpeg, monochrome1_jpegls ]: |
fddb35f7289d
test_bitbucket_issue_44
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
104
diff
changeset
|
3448 im = GetImage(_REMOTE, '/instances/%s/preview' % i) |
fddb35f7289d
test_bitbucket_issue_44
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
104
diff
changeset
|
3449 self.assertEqual("L", im.mode) |
fddb35f7289d
test_bitbucket_issue_44
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
104
diff
changeset
|
3450 self.assertEqual(2010, im.size[0]) |
fddb35f7289d
test_bitbucket_issue_44
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
104
diff
changeset
|
3451 self.assertEqual(2446, im.size[1]) |
fddb35f7289d
test_bitbucket_issue_44
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
104
diff
changeset
|
3452 |
fddb35f7289d
test_bitbucket_issue_44
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
104
diff
changeset
|
3453 # This is the chest image, with MONOCHROME1. Raw background is |
fddb35f7289d
test_bitbucket_issue_44
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
104
diff
changeset
|
3454 # white (255), should be rendered as black (0) => invert |
fddb35f7289d
test_bitbucket_issue_44
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
104
diff
changeset
|
3455 if i == monochrome1_jpeg: |
fddb35f7289d
test_bitbucket_issue_44
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
104
diff
changeset
|
3456 # Add some tolerance because of JPEG destructive compression |
fddb35f7289d
test_bitbucket_issue_44
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
104
diff
changeset
|
3457 self.assertGreater(10, im.getpixel((0,0))) |
fddb35f7289d
test_bitbucket_issue_44
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
104
diff
changeset
|
3458 else: |
fddb35f7289d
test_bitbucket_issue_44
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
104
diff
changeset
|
3459 self.assertEqual(0, im.getpixel((0,0))) |
fddb35f7289d
test_bitbucket_issue_44
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
104
diff
changeset
|
3460 |
fddb35f7289d
test_bitbucket_issue_44
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
104
diff
changeset
|
3461 im = GetImage(_REMOTE, '/instances/%s/preview' % monochrome2) |
fddb35f7289d
test_bitbucket_issue_44
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
104
diff
changeset
|
3462 self.assertEqual("L", im.mode) |
fddb35f7289d
test_bitbucket_issue_44
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
104
diff
changeset
|
3463 self.assertEqual(1572, im.size[0]) |
fddb35f7289d
test_bitbucket_issue_44
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
104
diff
changeset
|
3464 self.assertEqual(2010, im.size[1]) |
fddb35f7289d
test_bitbucket_issue_44
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
104
diff
changeset
|
3465 |
fddb35f7289d
test_bitbucket_issue_44
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
104
diff
changeset
|
3466 # This is the key image, with MONOCHROME2. Raw background is |
fddb35f7289d
test_bitbucket_issue_44
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
104
diff
changeset
|
3467 # white (255), should be rendered as white (255) |
fddb35f7289d
test_bitbucket_issue_44
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
104
diff
changeset
|
3468 self.assertEqual(255, im.getpixel((0,0))) |
111
7005cdeeb704
test_bitbucket_issue_42
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
107
diff
changeset
|
3469 |
7005cdeeb704
test_bitbucket_issue_42
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
107
diff
changeset
|
3470 |
7005cdeeb704
test_bitbucket_issue_42
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
107
diff
changeset
|
3471 def test_bitbucket_issue_42(self): |
319 | 3472 # https://bugs.orthanc-server.com/show_bug.cgi?id=42 |
123 | 3473 # This test fails on DCMTK 3.6.0, but succeeds in DCMTK 3.6.1 snapshots and DCMTK 3.6.2 |
111
7005cdeeb704
test_bitbucket_issue_42
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parents:
107
diff
changeset
|
3474 UploadInstance(_REMOTE, 'Issue42.dcm')['ID'] |
7005cdeeb704
test_bitbucket_issue_42
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
107
diff
changeset
|
3475 modified = DoPost(_REMOTE, |
7005cdeeb704
test_bitbucket_issue_42
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
107
diff
changeset
|
3476 '/patients/da128605-e040d0c4-310615d2-3475da63-df2d1ef4/modify', |
119 | 3477 '{"Replace":{"PatientID":"Hello","PatientName":"Sample patient name"},"Force":true}', |
111
7005cdeeb704
test_bitbucket_issue_42
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
107
diff
changeset
|
3478 'application/json') |
7005cdeeb704
test_bitbucket_issue_42
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
107
diff
changeset
|
3479 self.assertTrue('PatientID' in modified) |
113
3e5934363e76
test_rest_find_limitµ
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
112
diff
changeset
|
3480 |
3e5934363e76
test_rest_find_limitµ
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
112
diff
changeset
|
3481 |
3e5934363e76
test_rest_find_limitµ
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
112
diff
changeset
|
3482 def test_rest_find_limit(self): |
3e5934363e76
test_rest_find_limitµ
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
112
diff
changeset
|
3483 # Check the "Since" and "Limit" parameters in URI "/tools/find" |
319 | 3484 # Related to issue 53: https://bugs.orthanc-server.com/show_bug.cgi?id=53 |
111
7005cdeeb704
test_bitbucket_issue_42
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
107
diff
changeset
|
3485 |
113
3e5934363e76
test_rest_find_limitµ
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
112
diff
changeset
|
3486 # Upload 6 instances |
3e5934363e76
test_rest_find_limitµ
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
112
diff
changeset
|
3487 brainix = [] |
3e5934363e76
test_rest_find_limitµ
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
112
diff
changeset
|
3488 knee = [] |
3e5934363e76
test_rest_find_limitµ
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
112
diff
changeset
|
3489 for i in range(2): |
3e5934363e76
test_rest_find_limitµ
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
112
diff
changeset
|
3490 brainix.append(UploadInstance(_REMOTE, 'Brainix/Flair/IM-0001-000%d.dcm' % (i + 1)) ['ID']) |
3e5934363e76
test_rest_find_limitµ
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
112
diff
changeset
|
3491 brainix.append(UploadInstance(_REMOTE, 'Brainix/Epi/IM-0001-000%d.dcm' % (i + 1)) ['ID']) |
3e5934363e76
test_rest_find_limitµ
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
112
diff
changeset
|
3492 knee.append(UploadInstance(_REMOTE, 'Knee/T1/IM-0001-000%d.dcm' % (i + 1)) ['ID']) |
3e5934363e76
test_rest_find_limitµ
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
112
diff
changeset
|
3493 |
3e5934363e76
test_rest_find_limitµ
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
112
diff
changeset
|
3494 # Check using BRAINIX |
3e5934363e76
test_rest_find_limitµ
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
112
diff
changeset
|
3495 a = DoPost(_REMOTE, '/tools/find', { 'Level' : 'Instance', |
3e5934363e76
test_rest_find_limitµ
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
112
diff
changeset
|
3496 'Query' : { 'PatientName' : 'B*' }, |
3e5934363e76
test_rest_find_limitµ
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
112
diff
changeset
|
3497 'Limit' : 10 }) |
3e5934363e76
test_rest_find_limitµ
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
112
diff
changeset
|
3498 self.assertEqual(4, len(a)) |
3e5934363e76
test_rest_find_limitµ
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
112
diff
changeset
|
3499 |
3e5934363e76
test_rest_find_limitµ
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
112
diff
changeset
|
3500 a = DoPost(_REMOTE, '/tools/find', { 'Level' : 'Instance', |
3e5934363e76
test_rest_find_limitµ
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
112
diff
changeset
|
3501 'Query' : { 'PatientName' : 'B*' }, |
3e5934363e76
test_rest_find_limitµ
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
112
diff
changeset
|
3502 'Limit' : 4 }) |
3e5934363e76
test_rest_find_limitµ
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
112
diff
changeset
|
3503 self.assertEqual(4, len(a)) |
3e5934363e76
test_rest_find_limitµ
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
112
diff
changeset
|
3504 |
3e5934363e76
test_rest_find_limitµ
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
112
diff
changeset
|
3505 a = DoPost(_REMOTE, '/tools/find', { 'Level' : 'Instance', |
3e5934363e76
test_rest_find_limitµ
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
112
diff
changeset
|
3506 'Query' : { 'PatientName' : 'B*' }, |
3e5934363e76
test_rest_find_limitµ
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
112
diff
changeset
|
3507 'Since' : 2, |
3e5934363e76
test_rest_find_limitµ
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
112
diff
changeset
|
3508 'Limit' : 4 }) |
3e5934363e76
test_rest_find_limitµ
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
112
diff
changeset
|
3509 self.assertEqual(2, len(a)) |
3e5934363e76
test_rest_find_limitµ
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
112
diff
changeset
|
3510 |
3e5934363e76
test_rest_find_limitµ
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
112
diff
changeset
|
3511 a = DoPost(_REMOTE, '/tools/find', { 'Level' : 'Instance', |
3e5934363e76
test_rest_find_limitµ
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
112
diff
changeset
|
3512 'Query' : { 'PatientName' : 'B*' }, |
3e5934363e76
test_rest_find_limitµ
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
112
diff
changeset
|
3513 'Limit' : 3 }) |
3e5934363e76
test_rest_find_limitµ
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
112
diff
changeset
|
3514 self.assertEqual(3, len(a)) |
3e5934363e76
test_rest_find_limitµ
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
112
diff
changeset
|
3515 |
3e5934363e76
test_rest_find_limitµ
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
112
diff
changeset
|
3516 b = [] |
3e5934363e76
test_rest_find_limitµ
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
112
diff
changeset
|
3517 for i in range(4): |
3e5934363e76
test_rest_find_limitµ
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
112
diff
changeset
|
3518 a = DoPost(_REMOTE, '/tools/find', { 'Level' : 'Instance', |
3e5934363e76
test_rest_find_limitµ
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
112
diff
changeset
|
3519 'Query' : { 'PatientName' : 'B*' }, |
3e5934363e76
test_rest_find_limitµ
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
112
diff
changeset
|
3520 'Limit' : 1, |
3e5934363e76
test_rest_find_limitµ
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
112
diff
changeset
|
3521 'Since' : i }) |
3e5934363e76
test_rest_find_limitµ
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
112
diff
changeset
|
3522 self.assertEqual(1, len(a)) |
3e5934363e76
test_rest_find_limitµ
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
112
diff
changeset
|
3523 b.append(a[0]) |
3e5934363e76
test_rest_find_limitµ
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
112
diff
changeset
|
3524 |
3e5934363e76
test_rest_find_limitµ
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
112
diff
changeset
|
3525 # Check whether the two sets are equal through symmetric difference |
3e5934363e76
test_rest_find_limitµ
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
112
diff
changeset
|
3526 self.assertEqual(0, len(set(b) ^ set(brainix))) |
3e5934363e76
test_rest_find_limitµ
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
112
diff
changeset
|
3527 |
3e5934363e76
test_rest_find_limitµ
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
112
diff
changeset
|
3528 # Check using KNEE |
3e5934363e76
test_rest_find_limitµ
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
112
diff
changeset
|
3529 a = DoPost(_REMOTE, '/tools/find', { 'Level' : 'Instance', |
3e5934363e76
test_rest_find_limitµ
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
112
diff
changeset
|
3530 'Query' : { 'PatientName' : 'K*' }, |
3e5934363e76
test_rest_find_limitµ
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
112
diff
changeset
|
3531 'Limit' : 10 }) |
3e5934363e76
test_rest_find_limitµ
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
112
diff
changeset
|
3532 self.assertEqual(2, len(a)) |
3e5934363e76
test_rest_find_limitµ
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
112
diff
changeset
|
3533 |
3e5934363e76
test_rest_find_limitµ
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
112
diff
changeset
|
3534 a = DoPost(_REMOTE, '/tools/find', { 'Level' : 'Instance', |
3e5934363e76
test_rest_find_limitµ
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
112
diff
changeset
|
3535 'Query' : { 'PatientName' : 'K*' }, |
3e5934363e76
test_rest_find_limitµ
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
112
diff
changeset
|
3536 'Limit' : 2 }) |
3e5934363e76
test_rest_find_limitµ
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
112
diff
changeset
|
3537 self.assertEqual(2, len(a)) |
3e5934363e76
test_rest_find_limitµ
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
112
diff
changeset
|
3538 |
3e5934363e76
test_rest_find_limitµ
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
112
diff
changeset
|
3539 b = [] |
3e5934363e76
test_rest_find_limitµ
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
112
diff
changeset
|
3540 for i in range(2): |
3e5934363e76
test_rest_find_limitµ
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
112
diff
changeset
|
3541 a = DoPost(_REMOTE, '/tools/find', { 'Level' : 'Instance', |
3e5934363e76
test_rest_find_limitµ
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
112
diff
changeset
|
3542 'Query' : { 'PatientName' : 'K*' }, |
3e5934363e76
test_rest_find_limitµ
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
112
diff
changeset
|
3543 'Limit' : 1, |
3e5934363e76
test_rest_find_limitµ
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
112
diff
changeset
|
3544 'Since' : i }) |
3e5934363e76
test_rest_find_limitµ
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
112
diff
changeset
|
3545 self.assertEqual(1, len(a)) |
3e5934363e76
test_rest_find_limitµ
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
112
diff
changeset
|
3546 b.append(a[0]) |
3e5934363e76
test_rest_find_limitµ
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
112
diff
changeset
|
3547 |
3e5934363e76
test_rest_find_limitµ
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
112
diff
changeset
|
3548 self.assertEqual(0, len(set(b) ^ set(knee))) |
115
45ebfab035b7
test_bitbucket_issue_46
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
113
diff
changeset
|
3549 |
45ebfab035b7
test_bitbucket_issue_46
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
113
diff
changeset
|
3550 |
45ebfab035b7
test_bitbucket_issue_46
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
113
diff
changeset
|
3551 def test_bitbucket_issue_46(self): |
45ebfab035b7
test_bitbucket_issue_46
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
113
diff
changeset
|
3552 # "PHI remaining after anonymization" |
319 | 3553 # https://bugs.orthanc-server.com/show_bug.cgi?id=46 |
115
45ebfab035b7
test_bitbucket_issue_46
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
113
diff
changeset
|
3554 |
45ebfab035b7
test_bitbucket_issue_46
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
113
diff
changeset
|
3555 def GetAnonymizedTags(study, version): |
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test_bitbucket_issue_46
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113
diff
changeset
|
3556 anonymized = DoPost(_REMOTE, '/studies/%s/anonymize' % study, |
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113
diff
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|
3557 { 'DicomVersion' : version }, |
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113
diff
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|
3558 'application/json') ['ID'] |
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113
diff
changeset
|
3559 a = DoGet(_REMOTE, '/studies/%s/instances' % anonymized) |
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diff
changeset
|
3560 self.assertEqual(1, len(a)) |
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113
diff
changeset
|
3561 |
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test_bitbucket_issue_46
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113
diff
changeset
|
3562 instance = a[0]['ID'] |
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diff
changeset
|
3563 |
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diff
changeset
|
3564 return (instance, DoGet(_REMOTE, '/instances/%s/tags' % instance)) |
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diff
changeset
|
3565 |
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test_bitbucket_issue_46
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113
diff
changeset
|
3566 UploadInstance(_REMOTE, 'Issue44/Monochrome1.dcm') |
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diff
changeset
|
3567 origStudy = '6068a14b-d4df27af-9ec22145-538772d8-74f228ff' |
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diff
changeset
|
3568 |
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diff
changeset
|
3569 # Add the 0032,1033 (Requesting Service) and the 0010,1060 |
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|
3570 # (Patient's Mother's Birth Name) tags |
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|
3571 newStudy = DoPost(_REMOTE, '/studies/%s/modify' % origStudy, |
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diff
changeset
|
3572 '{"Replace":{"0010,1060":"OSIMIS","0032,1033":"MOTHER"}}', |
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|
3573 'application/json')['ID'] |
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diff
changeset
|
3574 |
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diff
changeset
|
3575 # Use Table E.1-1 from PS 3.15-2008 |
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|
3576 # https://raw.githubusercontent.com/jodogne/dicom-specification/master/2008/08_15pu.pdf |
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|
3577 (instance, tags) = GetAnonymizedTags(newStudy, "2008") |
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|
3578 self.assertTrue('0032,1033' in tags) |
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changeset
|
3579 self.assertTrue('0010,1060' in tags) |
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diff
changeset
|
3580 |
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diff
changeset
|
3581 # Use Table E.1-1 from PS 3.15-2011 (only if Orthanc >= 1.2.1) |
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|
3582 # https://raw.githubusercontent.com/jodogne/dicom-specification/master/2008/08_15pu.pdf |
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3583 (instance, tags) = GetAnonymizedTags(newStudy, "2017c") |
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3584 self.assertFalse('0032,1033' in tags) |
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3585 self.assertFalse('0010,1060' in tags) |
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3586 |
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3587 t = {} |
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3588 for (key, value) in tags.iteritems(): |
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3589 t[value['Name']] = value['Value'] |
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3590 |
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3591 self.assertEqual('', t['StudyDate']) # Type 1 tag => cleared |
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3592 self.assertEqual('', t['StudyTime']) # Type 1 tag => cleared |
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3593 self.assertEqual('', t['PatientSex']) # Type 1 tag => cleared |
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3594 self.assertFalse('SeriesDate' in t) # Type 3 tag => null |
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3595 self.assertFalse('SeriesTime' in t) # Type 3 tag => null |
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3596 |
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3597 with tempfile.NamedTemporaryFile(delete = True) as f: |
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3598 # Run "dciodvfy" on the anonymized file to be sure it is still valid |
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3599 f.write(DoGet(_REMOTE, '/instances/%s/file' % instance)) |
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3600 f.flush() |
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3601 subprocess.check_output([ FindExecutable('dciodvfy'), f.name ], |
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3602 stderr = subprocess.STDOUT).split('\n') |
118
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3603 |
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3604 |
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3605 def test_bitbucket_issue_55(self): |
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3606 def Run(modify, query): |
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3607 self.assertEqual(1, len(DoGet(_REMOTE, '/instances'))) |
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3608 |
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3609 operation = 'modify' if modify else 'anonymize' |
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3610 |
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3611 self.assertRaises(Exception, lambda: DoPost( |
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3612 _REMOTE, '/studies/%s/%s' % (study, operation), query)) |
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3613 self.assertEqual(1, len(DoGet(_REMOTE, '/instances'))) |
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3614 |
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3615 query["Force"] = True |
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3616 a = DoPost(_REMOTE, '/studies/%s/%s' % (study, operation), query)['Path'] |
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3617 self.assertEqual(2, len(DoGet(_REMOTE, '/instances'))) |
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3618 DoDelete(_REMOTE, a) |
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3619 |
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3620 self.assertEqual(1, len(DoGet(_REMOTE, '/instances'))) |
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3621 |
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3622 UploadInstance(_REMOTE, 'DummyCT.dcm') |
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3623 study = 'b9c08539-26f93bde-c81ab0d7-bffaf2cb-a4d0bdd0' |
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3624 |
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3625 Run(True, { "Replace" : { "StudyInstanceUID" : "world" } }) |
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3626 Run(True, { "Replace" : { "SeriesInstanceUID" : "world" } }) |
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3627 Run(True, { "Replace" : { "SOPInstanceUID" : "world" } }) |
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3628 |
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3629 Run(False, { "Keep" : [ "StudyInstanceUID" ]}) |
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3630 Run(False, { "Keep" : [ "SeriesInstanceUID" ]}) |
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3631 Run(False, { "Keep" : [ "SOPInstanceUID" ]}) |
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3632 |
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3633 Run(False, { "Replace" : { "StudyInstanceUID" : "world" } }) |
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3634 Run(False, { "Replace" : { "SeriesInstanceUID" : "world" } }) |
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3635 Run(False, { "Replace" : { "SOPInstanceUID" : "world" } }) |
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3636 |
120
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3637 |
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3638 def test_bitbucket_issue_56(self): |
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3639 # Case-insensitive matching over accents. This test assumes |
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3640 # that the "CaseSensitivePN" configuration option of Orthanc |
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3641 # is set to "false" (default value). |
319 | 3642 # https://bugs.orthanc-server.com/show_bug.cgi?id=56 |
120
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3643 |
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3644 def Check(name, expected, expectedSensitive): |
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3645 a = CallFindScu([ '-k', '0008,0005=ISO_IR 192', # Use UTF-8 |
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3646 '-k', '0008,0052=PATIENT', |
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3647 '-k', 'PatientName=%s' % name ]) |
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3648 patientNames = re.findall('\(0010,0010\).*?\[(.*?)\]', a) |
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3649 self.assertEqual(expected, len(patientNames)) |
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3650 |
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3651 a = DoPost(_REMOTE, '/tools/find', { 'Level' : 'Patient', |
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3652 'CaseSensitive' : False, |
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3653 'Query' : { 'PatientName' : name }}) |
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3654 self.assertEqual(expected, len(a)) |
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3655 |
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3656 a = DoPost(_REMOTE, '/tools/find', { 'Level' : 'Patient', |
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3657 'CaseSensitive' : True, |
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3658 'Query' : { 'PatientName' : name }}) |
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3659 self.assertEqual(expectedSensitive, len(a)) |
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3660 |
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3661 UploadInstance(_REMOTE, 'Encodings/Lena-latin1.dcm') |
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3662 |
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3663 # WildcardConstraint |
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3664 Check('TeSt*', 1, 0) |
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3665 Check('TeSt-a*', 0, 0) |
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3666 Check('TeSt-É*', 1, 0) |
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3667 Check('TeSt-é*', 1, 0) |
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3668 Check('Test-é*', 1, 1) |
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3669 |
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3670 # ListConstraint |
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3671 Check('Test-éüäöò\\nope', 1, 1) |
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3672 Check('Test-ÉÜÄÖÒ\\nope', 1, 0) |
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3673 |
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3674 # ValueConstraint |
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3675 Check('Test-éüäöò', 1, 1) |
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3676 Check('Test-ÉÜÄÖÒ', 1, 0) |
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3677 |
125 | 3678 |
3679 def test_gbk_alias(self): | |
3680 # https://groups.google.com/d/msg/orthanc-users/WMM8LMbjpUc/02-1f_yFCgAJ | |
3681 # This test fails on Orthanc <= 1.3.0 | |
3682 i = UploadInstance(_REMOTE, '2017-09-19-GBK-Tumashu.dcm')['ID'] | |
3683 tags = DoGet(_REMOTE, '/instances/%s/tags?simplify' % i) | |
3684 self.assertEqual(tags['PatientName'], u'徐浩凯') | |
3685 self.assertEqual(tags['InstitutionName'], u'灌云县疾病预防控制中心') | |
126 | 3686 |
3687 | |
3688 def test_long_tag(self): | |
3689 i = UploadInstance(_REMOTE, 'DummyCTWithLongTag.dcm')['ID'] | |
3690 series = 'f2635388-f01d497a-15f7c06b-ad7dba06-c4c599fe' | |
3691 | |
3692 tags = DoGet(_REMOTE, '/instances/%s/tags' % i) | |
3693 self.assertTrue('0018,1020' in tags) | |
3694 self.assertEqual('SoftwareVersions', tags['0018,1020']['Name']) | |
3695 self.assertEqual('TooLong', tags['0018,1020']['Type']) | |
3696 self.assertEqual(None, tags['0018,1020']['Value']) | |
3697 | |
3698 tags = DoGet(_REMOTE, '/instances/%s/tags?ignore-length=0018-1020' % i) | |
3699 self.assertTrue('0018,1020' in tags) | |
3700 self.assertEqual('SoftwareVersions', tags['0018,1020']['Name']) | |
3701 self.assertEqual('String', tags['0018,1020']['Type']) | |
3702 self.assertTrue(tags['0018,1020']['Value'].startswith('Lorem ipsum dolor sit amet')) | |
3703 | |
3704 tags = DoGet(_REMOTE, '/instances/%s/tags?simplify' % i) | |
3705 self.assertTrue('SoftwareVersions' in tags) | |
3706 self.assertEqual(None, tags['SoftwareVersions']) | |
3707 self.assertTrue('HeartRate' in tags) | |
3708 self.assertEqual(474, int(tags['HeartRate'])) | |
3709 | |
3710 tags = DoGet(_REMOTE, '/instances/%s/simplified-tags' % i) | |
3711 self.assertTrue('SoftwareVersions' in tags) | |
3712 self.assertEqual(None, tags['SoftwareVersions']) | |
3713 | |
3714 tags = DoGet(_REMOTE, '/instances/%s/tags?simplify&ignore-length=0018-1020' % i) | |
3715 self.assertTrue('SoftwareVersions' in tags) | |
3716 self.assertTrue(tags['SoftwareVersions'].startswith('Lorem ipsum dolor sit amet')) | |
3717 | |
3718 tags = DoGet(_REMOTE, '/instances/%s/tags?simplify&ignore-length=SoftwareVersions' % i) | |
3719 self.assertTrue('SoftwareVersions' in tags) | |
3720 self.assertTrue(tags['SoftwareVersions'].startswith('Lorem ipsum dolor sit amet')) | |
3721 | |
3722 tags = DoGet(_REMOTE, '/series/%s/instances-tags' % series) | |
3723 self.assertEqual(1, len(tags)) | |
3724 self.assertTrue(i in tags.keys()) | |
3725 self.assertTrue('0018,1020' in tags[i]) | |
3726 self.assertEqual('TooLong', tags[i]['0018,1020']['Type']) | |
3727 | |
3728 tags = DoGet(_REMOTE, '/series/%s/instances-tags?ignore-length=SoftwareVersions' % series) | |
3729 self.assertEqual(1, len(tags)) | |
3730 self.assertTrue(i in tags.keys()) | |
3731 self.assertTrue('0018,1020' in tags[i]) | |
3732 self.assertEqual('String', tags[i]['0018,1020']['Type']) | |
3733 self.assertTrue(tags[i]['0018,1020']['Value'].startswith('Lorem ipsum dolor sit amet')) | |
3734 | |
127
1eea4d3a1ba9
test_extended_media
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
126
diff
changeset
|
3735 |
1eea4d3a1ba9
test_extended_media
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
126
diff
changeset
|
3736 def test_extended_media(self): |
1eea4d3a1ba9
test_extended_media
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
126
diff
changeset
|
3737 UploadInstance(_REMOTE, 'Knee/T1/IM-0001-0001.dcm') |
1eea4d3a1ba9
test_extended_media
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
126
diff
changeset
|
3738 |
1eea4d3a1ba9
test_extended_media
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
126
diff
changeset
|
3739 z = GetArchive(_REMOTE, '/patients/%s/media?extended' % DoGet(_REMOTE, '/patients')[0]) |
1eea4d3a1ba9
test_extended_media
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
126
diff
changeset
|
3740 self.assertEqual(2, len(z.namelist())) |
1eea4d3a1ba9
test_extended_media
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
126
diff
changeset
|
3741 self.assertTrue('IMAGES/IM0' in z.namelist()) |
1eea4d3a1ba9
test_extended_media
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
126
diff
changeset
|
3742 self.assertTrue('DICOMDIR' in z.namelist()) |
1eea4d3a1ba9
test_extended_media
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
126
diff
changeset
|
3743 |
1eea4d3a1ba9
test_extended_media
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
126
diff
changeset
|
3744 try: |
1eea4d3a1ba9
test_extended_media
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
126
diff
changeset
|
3745 os.remove('/tmp/DICOMDIR') |
1eea4d3a1ba9
test_extended_media
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
126
diff
changeset
|
3746 except: |
1eea4d3a1ba9
test_extended_media
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
126
diff
changeset
|
3747 # The file does not exist |
1eea4d3a1ba9
test_extended_media
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
126
diff
changeset
|
3748 pass |
1eea4d3a1ba9
test_extended_media
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
126
diff
changeset
|
3749 |
1eea4d3a1ba9
test_extended_media
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
126
diff
changeset
|
3750 z.extract('DICOMDIR', '/tmp') |
1eea4d3a1ba9
test_extended_media
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
126
diff
changeset
|
3751 a = subprocess.check_output([ FindExecutable('dciodvfy'), '/tmp/DICOMDIR' ], |
1eea4d3a1ba9
test_extended_media
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
126
diff
changeset
|
3752 stderr = subprocess.STDOUT).split('\n') |
1eea4d3a1ba9
test_extended_media
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
126
diff
changeset
|
3753 self.assertEqual(5, len(a)) |
1eea4d3a1ba9
test_extended_media
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
126
diff
changeset
|
3754 self.assertTrue(a[0].startswith('Warning')) |
1eea4d3a1ba9
test_extended_media
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
126
diff
changeset
|
3755 self.assertEqual('BasicDirectory', a[1]) |
1eea4d3a1ba9
test_extended_media
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
126
diff
changeset
|
3756 self.assertTrue('not present in standard DICOM IOD' in a[2]) |
1eea4d3a1ba9
test_extended_media
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
126
diff
changeset
|
3757 self.assertTrue('not present in standard DICOM IOD' in a[3]) |
1eea4d3a1ba9
test_extended_media
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
126
diff
changeset
|
3758 self.assertEqual('', a[4]) |
1eea4d3a1ba9
test_extended_media
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
126
diff
changeset
|
3759 |
1eea4d3a1ba9
test_extended_media
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
126
diff
changeset
|
3760 a = subprocess.check_output([ FindExecutable('dcentvfy'), '/tmp/DICOMDIR' ], |
1eea4d3a1ba9
test_extended_media
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
126
diff
changeset
|
3761 stderr = subprocess.STDOUT).split('\n') |
1eea4d3a1ba9
test_extended_media
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
126
diff
changeset
|
3762 self.assertEqual(1, len(a)) |
1eea4d3a1ba9
test_extended_media
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
126
diff
changeset
|
3763 self.assertEqual('', a[0]) |
1eea4d3a1ba9
test_extended_media
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
126
diff
changeset
|
3764 |
1eea4d3a1ba9
test_extended_media
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
126
diff
changeset
|
3765 a = subprocess.check_output([ FindExecutable('dcm2xml'), '/tmp/DICOMDIR' ]) |
1eea4d3a1ba9
test_extended_media
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
126
diff
changeset
|
3766 self.assertTrue(re.search('1.3.46.670589.11.17521.5.0.3124.2008081908590448738', a) != None) |
1eea4d3a1ba9
test_extended_media
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
126
diff
changeset
|
3767 |
1eea4d3a1ba9
test_extended_media
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
126
diff
changeset
|
3768 # Check the presence of the series description (extended tag) |
1eea4d3a1ba9
test_extended_media
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
126
diff
changeset
|
3769 self.assertTrue(re.search('T1W_aTSE', a) != None) |
1eea4d3a1ba9
test_extended_media
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
126
diff
changeset
|
3770 |
1eea4d3a1ba9
test_extended_media
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
126
diff
changeset
|
3771 os.remove('/tmp/DICOMDIR') |
1eea4d3a1ba9
test_extended_media
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
126
diff
changeset
|
3772 |
1eea4d3a1ba9
test_extended_media
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
126
diff
changeset
|
3773 |
132
149144d854bb
Orthanc.test_anonymize_relationships_1/2
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
130
diff
changeset
|
3774 def test_anonymize_relationships_1(self): |
133
f0d4c4707e64
test_anonymize_relationships_3
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
132
diff
changeset
|
3775 UploadInstance(_REMOTE, 'Knee/T1/IM-0001-0001.dcm') |
f0d4c4707e64
test_anonymize_relationships_3
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
132
diff
changeset
|
3776 UploadInstance(_REMOTE, 'Knee/T1/IM-0001-0002.dcm') |
132
149144d854bb
Orthanc.test_anonymize_relationships_1/2
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
130
diff
changeset
|
3777 study = '0a9b3153-2512774b-2d9580de-1fc3dcf6-3bd83918' |
149144d854bb
Orthanc.test_anonymize_relationships_1/2
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
130
diff
changeset
|
3778 |
149144d854bb
Orthanc.test_anonymize_relationships_1/2
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
130
diff
changeset
|
3779 anonymized = DoPost(_REMOTE, '/studies/%s/anonymize' % study, |
149144d854bb
Orthanc.test_anonymize_relationships_1/2
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
130
diff
changeset
|
3780 '{}', |
149144d854bb
Orthanc.test_anonymize_relationships_1/2
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
130
diff
changeset
|
3781 'application/json')['ID'] |
149144d854bb
Orthanc.test_anonymize_relationships_1/2
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
130
diff
changeset
|
3782 |
149144d854bb
Orthanc.test_anonymize_relationships_1/2
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
130
diff
changeset
|
3783 a = DoGet(_REMOTE, '/studies/%s/instances' % study) |
149144d854bb
Orthanc.test_anonymize_relationships_1/2
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
130
diff
changeset
|
3784 self.assertEqual(2, len(a)) |
149144d854bb
Orthanc.test_anonymize_relationships_1/2
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
130
diff
changeset
|
3785 a1 = a[0]['ID'] |
149144d854bb
Orthanc.test_anonymize_relationships_1/2
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
130
diff
changeset
|
3786 a2 = a[1]['ID'] |
149144d854bb
Orthanc.test_anonymize_relationships_1/2
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
130
diff
changeset
|
3787 |
149144d854bb
Orthanc.test_anonymize_relationships_1/2
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
130
diff
changeset
|
3788 b = DoGet(_REMOTE, '/studies/%s/instances' % anonymized) |
149144d854bb
Orthanc.test_anonymize_relationships_1/2
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
130
diff
changeset
|
3789 self.assertEqual(2, len(b)) |
149144d854bb
Orthanc.test_anonymize_relationships_1/2
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
130
diff
changeset
|
3790 b1 = b[0]['ID'] |
149144d854bb
Orthanc.test_anonymize_relationships_1/2
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
130
diff
changeset
|
3791 b2 = b[1]['ID'] |
149144d854bb
Orthanc.test_anonymize_relationships_1/2
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
130
diff
changeset
|
3792 |
149144d854bb
Orthanc.test_anonymize_relationships_1/2
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
130
diff
changeset
|
3793 SEQUENCE = '/instances/%s/content/ReferencedImageSequence' |
149144d854bb
Orthanc.test_anonymize_relationships_1/2
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
130
diff
changeset
|
3794 SOP = '/instances/%s/content/ReferencedImageSequence/%d/ReferencedSOPInstanceUID' |
149144d854bb
Orthanc.test_anonymize_relationships_1/2
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
130
diff
changeset
|
3795 CLASS = '/instances/%s/content/ReferencedImageSequence/%d/ReferencedSOPClassUID' |
149144d854bb
Orthanc.test_anonymize_relationships_1/2
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
130
diff
changeset
|
3796 FRAME = '/instances/%s/content/FrameOfReferenceUID' |
149144d854bb
Orthanc.test_anonymize_relationships_1/2
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
130
diff
changeset
|
3797 |
149144d854bb
Orthanc.test_anonymize_relationships_1/2
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
130
diff
changeset
|
3798 self.assertEqual(DoGet(_REMOTE, FRAME % a1), |
149144d854bb
Orthanc.test_anonymize_relationships_1/2
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
130
diff
changeset
|
3799 DoGet(_REMOTE, FRAME % a2)) |
149144d854bb
Orthanc.test_anonymize_relationships_1/2
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
130
diff
changeset
|
3800 self.assertEqual(DoGet(_REMOTE, FRAME % b1), |
149144d854bb
Orthanc.test_anonymize_relationships_1/2
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
130
diff
changeset
|
3801 DoGet(_REMOTE, FRAME % b2)) |
149144d854bb
Orthanc.test_anonymize_relationships_1/2
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
130
diff
changeset
|
3802 self.assertNotEqual(DoGet(_REMOTE, FRAME % a1), |
149144d854bb
Orthanc.test_anonymize_relationships_1/2
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
130
diff
changeset
|
3803 DoGet(_REMOTE, FRAME % b1)) |
149144d854bb
Orthanc.test_anonymize_relationships_1/2
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
130
diff
changeset
|
3804 self.assertNotEqual(DoGet(_REMOTE, FRAME % a2), |
149144d854bb
Orthanc.test_anonymize_relationships_1/2
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
130
diff
changeset
|
3805 DoGet(_REMOTE, FRAME % b2)) |
149144d854bb
Orthanc.test_anonymize_relationships_1/2
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
130
diff
changeset
|
3806 |
149144d854bb
Orthanc.test_anonymize_relationships_1/2
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
130
diff
changeset
|
3807 self.assertEqual(3, len(DoGet(_REMOTE, SEQUENCE % a1))) |
149144d854bb
Orthanc.test_anonymize_relationships_1/2
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
130
diff
changeset
|
3808 self.assertEqual(3, len(DoGet(_REMOTE, SEQUENCE % a2))) |
149144d854bb
Orthanc.test_anonymize_relationships_1/2
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
130
diff
changeset
|
3809 self.assertEqual(3, len(DoGet(_REMOTE, SEQUENCE % b1))) |
149144d854bb
Orthanc.test_anonymize_relationships_1/2
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
130
diff
changeset
|
3810 self.assertEqual(3, len(DoGet(_REMOTE, SEQUENCE % b2))) |
149144d854bb
Orthanc.test_anonymize_relationships_1/2
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
130
diff
changeset
|
3811 |
149144d854bb
Orthanc.test_anonymize_relationships_1/2
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
130
diff
changeset
|
3812 for i in range(3): |
149144d854bb
Orthanc.test_anonymize_relationships_1/2
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
130
diff
changeset
|
3813 self.assertEqual(DoGet(_REMOTE, SOP % (a1, i)), |
149144d854bb
Orthanc.test_anonymize_relationships_1/2
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
130
diff
changeset
|
3814 DoGet(_REMOTE, SOP % (a2, i))) |
149144d854bb
Orthanc.test_anonymize_relationships_1/2
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
130
diff
changeset
|
3815 self.assertEqual(DoGet(_REMOTE, SOP % (b1, i)), |
149144d854bb
Orthanc.test_anonymize_relationships_1/2
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
130
diff
changeset
|
3816 DoGet(_REMOTE, SOP % (b2, i))) |
149144d854bb
Orthanc.test_anonymize_relationships_1/2
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
130
diff
changeset
|
3817 self.assertNotEqual(DoGet(_REMOTE, SOP % (a1, i)), |
149144d854bb
Orthanc.test_anonymize_relationships_1/2
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
130
diff
changeset
|
3818 DoGet(_REMOTE, SOP % (b1, i))) |
149144d854bb
Orthanc.test_anonymize_relationships_1/2
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
130
diff
changeset
|
3819 self.assertNotEqual(DoGet(_REMOTE, SOP % (a2, i)), |
149144d854bb
Orthanc.test_anonymize_relationships_1/2
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
130
diff
changeset
|
3820 DoGet(_REMOTE, SOP % (b2, i))) |
149144d854bb
Orthanc.test_anonymize_relationships_1/2
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
130
diff
changeset
|
3821 self.assertEqual(DoGet(_REMOTE, CLASS % (a1, i)), |
149144d854bb
Orthanc.test_anonymize_relationships_1/2
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
130
diff
changeset
|
3822 DoGet(_REMOTE, CLASS % (b1, i))) |
149144d854bb
Orthanc.test_anonymize_relationships_1/2
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
130
diff
changeset
|
3823 self.assertEqual(DoGet(_REMOTE, CLASS % (a2, i)), |
149144d854bb
Orthanc.test_anonymize_relationships_1/2
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
130
diff
changeset
|
3824 DoGet(_REMOTE, CLASS % (b2, i))) |
149144d854bb
Orthanc.test_anonymize_relationships_1/2
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
130
diff
changeset
|
3825 |
149144d854bb
Orthanc.test_anonymize_relationships_1/2
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
130
diff
changeset
|
3826 |
149144d854bb
Orthanc.test_anonymize_relationships_1/2
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
130
diff
changeset
|
3827 def test_anonymize_relationships_2(self): |
133
f0d4c4707e64
test_anonymize_relationships_3
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
132
diff
changeset
|
3828 UploadInstance(_REMOTE, 'Comunix/Ct/IM-0001-0001.dcm') |
f0d4c4707e64
test_anonymize_relationships_3
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
132
diff
changeset
|
3829 UploadInstance(_REMOTE, 'Comunix/Ct/IM-0001-0002.dcm') |
132
149144d854bb
Orthanc.test_anonymize_relationships_1/2
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
130
diff
changeset
|
3830 study = '6c65289b-db2fcb71-7eaf73f4-8e12470c-a4d6d7cf' |
149144d854bb
Orthanc.test_anonymize_relationships_1/2
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
130
diff
changeset
|
3831 |
149144d854bb
Orthanc.test_anonymize_relationships_1/2
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
130
diff
changeset
|
3832 anonymized = DoPost(_REMOTE, '/studies/%s/anonymize' % study, |
149144d854bb
Orthanc.test_anonymize_relationships_1/2
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
130
diff
changeset
|
3833 '{}', |
149144d854bb
Orthanc.test_anonymize_relationships_1/2
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
130
diff
changeset
|
3834 'application/json')['ID'] |
149144d854bb
Orthanc.test_anonymize_relationships_1/2
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
130
diff
changeset
|
3835 |
149144d854bb
Orthanc.test_anonymize_relationships_1/2
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
130
diff
changeset
|
3836 a = DoGet(_REMOTE, '/studies/%s/instances' % study) |
149144d854bb
Orthanc.test_anonymize_relationships_1/2
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parents:
130
diff
changeset
|
3837 self.assertEqual(2, len(a)) |
149144d854bb
Orthanc.test_anonymize_relationships_1/2
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
130
diff
changeset
|
3838 a1 = a[0]['ID'] |
149144d854bb
Orthanc.test_anonymize_relationships_1/2
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
130
diff
changeset
|
3839 a2 = a[1]['ID'] |
149144d854bb
Orthanc.test_anonymize_relationships_1/2
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
130
diff
changeset
|
3840 |
149144d854bb
Orthanc.test_anonymize_relationships_1/2
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
130
diff
changeset
|
3841 b = DoGet(_REMOTE, '/studies/%s/instances' % anonymized) |
149144d854bb
Orthanc.test_anonymize_relationships_1/2
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
130
diff
changeset
|
3842 self.assertEqual(2, len(b)) |
149144d854bb
Orthanc.test_anonymize_relationships_1/2
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
130
diff
changeset
|
3843 b1 = b[0]['ID'] |
149144d854bb
Orthanc.test_anonymize_relationships_1/2
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
130
diff
changeset
|
3844 b2 = b[1]['ID'] |
149144d854bb
Orthanc.test_anonymize_relationships_1/2
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
130
diff
changeset
|
3845 |
149144d854bb
Orthanc.test_anonymize_relationships_1/2
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
130
diff
changeset
|
3846 SEQUENCE = '/instances/%s/content/SourceImageSequence' |
149144d854bb
Orthanc.test_anonymize_relationships_1/2
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
130
diff
changeset
|
3847 SOP = '/instances/%s/content/SourceImageSequence/%d/ReferencedSOPInstanceUID' |
149144d854bb
Orthanc.test_anonymize_relationships_1/2
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
130
diff
changeset
|
3848 CLASS = '/instances/%s/content/SourceImageSequence/%d/ReferencedSOPClassUID' |
149144d854bb
Orthanc.test_anonymize_relationships_1/2
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
130
diff
changeset
|
3849 |
149144d854bb
Orthanc.test_anonymize_relationships_1/2
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
130
diff
changeset
|
3850 self.assertEqual(1, len(DoGet(_REMOTE, SEQUENCE % a1))) |
149144d854bb
Orthanc.test_anonymize_relationships_1/2
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
130
diff
changeset
|
3851 self.assertEqual(1, len(DoGet(_REMOTE, SEQUENCE % a2))) |
149144d854bb
Orthanc.test_anonymize_relationships_1/2
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
130
diff
changeset
|
3852 self.assertEqual(1, len(DoGet(_REMOTE, SEQUENCE % b1))) |
149144d854bb
Orthanc.test_anonymize_relationships_1/2
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
130
diff
changeset
|
3853 self.assertEqual(1, len(DoGet(_REMOTE, SEQUENCE % b2))) |
149144d854bb
Orthanc.test_anonymize_relationships_1/2
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
130
diff
changeset
|
3854 self.assertEqual(DoGet(_REMOTE, SOP % (a1, 0)), |
149144d854bb
Orthanc.test_anonymize_relationships_1/2
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
130
diff
changeset
|
3855 DoGet(_REMOTE, SOP % (a2, 0))) |
149144d854bb
Orthanc.test_anonymize_relationships_1/2
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
130
diff
changeset
|
3856 self.assertEqual(DoGet(_REMOTE, SOP % (b1, 0)), |
149144d854bb
Orthanc.test_anonymize_relationships_1/2
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
130
diff
changeset
|
3857 DoGet(_REMOTE, SOP % (b2, 0))) |
149144d854bb
Orthanc.test_anonymize_relationships_1/2
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
130
diff
changeset
|
3858 self.assertNotEqual(DoGet(_REMOTE, SOP % (a1, 0)), |
149144d854bb
Orthanc.test_anonymize_relationships_1/2
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
130
diff
changeset
|
3859 DoGet(_REMOTE, SOP % (b1, 0))) |
149144d854bb
Orthanc.test_anonymize_relationships_1/2
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
130
diff
changeset
|
3860 self.assertNotEqual(DoGet(_REMOTE, SOP % (a2, 0)), |
149144d854bb
Orthanc.test_anonymize_relationships_1/2
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
130
diff
changeset
|
3861 DoGet(_REMOTE, SOP % (b2, 0))) |
149144d854bb
Orthanc.test_anonymize_relationships_1/2
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
130
diff
changeset
|
3862 self.assertEqual(DoGet(_REMOTE, CLASS % (a1, 0)), |
149144d854bb
Orthanc.test_anonymize_relationships_1/2
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
130
diff
changeset
|
3863 DoGet(_REMOTE, CLASS % (b1, 0))) |
149144d854bb
Orthanc.test_anonymize_relationships_1/2
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
130
diff
changeset
|
3864 self.assertEqual(DoGet(_REMOTE, CLASS % (a2, 0)), |
149144d854bb
Orthanc.test_anonymize_relationships_1/2
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
130
diff
changeset
|
3865 DoGet(_REMOTE, CLASS % (b2, 0))) |
133
f0d4c4707e64
test_anonymize_relationships_3
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
132
diff
changeset
|
3866 |
f0d4c4707e64
test_anonymize_relationships_3
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
132
diff
changeset
|
3867 |
f0d4c4707e64
test_anonymize_relationships_3
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
132
diff
changeset
|
3868 def test_anonymize_relationships_3(self): |
f0d4c4707e64
test_anonymize_relationships_3
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
132
diff
changeset
|
3869 sr1 = UploadInstance(_REMOTE, 'HierarchicalAnonymization/StructuredReports/IM0')['ID'] |
f0d4c4707e64
test_anonymize_relationships_3
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
132
diff
changeset
|
3870 mr1 = UploadInstance(_REMOTE, 'HierarchicalAnonymization/StructuredReports/IM631')['ID'] |
f0d4c4707e64
test_anonymize_relationships_3
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
132
diff
changeset
|
3871 study = 'ef351eb2-c1147229-062736b8-35a151e3-e32d526b' |
f0d4c4707e64
test_anonymize_relationships_3
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
132
diff
changeset
|
3872 |
f0d4c4707e64
test_anonymize_relationships_3
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
132
diff
changeset
|
3873 anonymized = DoPost(_REMOTE, '/studies/%s/anonymize' % study, |
f0d4c4707e64
test_anonymize_relationships_3
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
132
diff
changeset
|
3874 { "Keep" : [ "ContentSequence" ] }) ['ID'] |
f0d4c4707e64
test_anonymize_relationships_3
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
132
diff
changeset
|
3875 |
f0d4c4707e64
test_anonymize_relationships_3
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
132
diff
changeset
|
3876 a = DoGet(_REMOTE, '/studies/%s/instances' % anonymized) |
f0d4c4707e64
test_anonymize_relationships_3
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
132
diff
changeset
|
3877 self.assertEqual(2, len(a)) |
f0d4c4707e64
test_anonymize_relationships_3
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
132
diff
changeset
|
3878 |
f0d4c4707e64
test_anonymize_relationships_3
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
132
diff
changeset
|
3879 if DoGet(_REMOTE, '/instances/%s/content/Modality' % a[0]['ID']) == 'SR': |
f0d4c4707e64
test_anonymize_relationships_3
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
132
diff
changeset
|
3880 sr2 = a[0]['ID'] |
f0d4c4707e64
test_anonymize_relationships_3
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
132
diff
changeset
|
3881 mr2 = a[1]['ID'] |
f0d4c4707e64
test_anonymize_relationships_3
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
132
diff
changeset
|
3882 else: |
f0d4c4707e64
test_anonymize_relationships_3
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
132
diff
changeset
|
3883 sr2 = a[1]['ID'] |
f0d4c4707e64
test_anonymize_relationships_3
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
132
diff
changeset
|
3884 mr2 = a[0]['ID'] |
f0d4c4707e64
test_anonymize_relationships_3
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
132
diff
changeset
|
3885 |
f0d4c4707e64
test_anonymize_relationships_3
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
132
diff
changeset
|
3886 self.assertEqual(DoGet(_REMOTE, '/instances/%s/content/Modality' % sr1), |
f0d4c4707e64
test_anonymize_relationships_3
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
132
diff
changeset
|
3887 DoGet(_REMOTE, '/instances/%s/content/Modality' % sr2)) |
f0d4c4707e64
test_anonymize_relationships_3
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
132
diff
changeset
|
3888 self.assertEqual(DoGet(_REMOTE, '/instances/%s/content/Modality' % mr1), |
f0d4c4707e64
test_anonymize_relationships_3
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
132
diff
changeset
|
3889 DoGet(_REMOTE, '/instances/%s/content/Modality' % mr2)) |
f0d4c4707e64
test_anonymize_relationships_3
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
132
diff
changeset
|
3890 |
f0d4c4707e64
test_anonymize_relationships_3
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
132
diff
changeset
|
3891 mrUid1 = DoGet(_REMOTE, '/instances/%s' % mr1)['MainDicomTags']['SOPInstanceUID'] |
f0d4c4707e64
test_anonymize_relationships_3
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
132
diff
changeset
|
3892 mrUid2 = DoGet(_REMOTE, '/instances/%s' % mr2)['MainDicomTags']['SOPInstanceUID'] |
f0d4c4707e64
test_anonymize_relationships_3
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
132
diff
changeset
|
3893 mrSeries1 = DoGet(_REMOTE, '/instances/%s/content/SeriesInstanceUID' % mr1).strip('\x00') |
f0d4c4707e64
test_anonymize_relationships_3
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
132
diff
changeset
|
3894 mrSeries2 = DoGet(_REMOTE, '/instances/%s/content/SeriesInstanceUID' % mr2).strip('\x00') |
f0d4c4707e64
test_anonymize_relationships_3
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
132
diff
changeset
|
3895 mrStudy1 = DoGet(_REMOTE, '/instances/%s/content/StudyInstanceUID' % mr1).strip('\x00') |
f0d4c4707e64
test_anonymize_relationships_3
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
132
diff
changeset
|
3896 mrStudy2 = DoGet(_REMOTE, '/instances/%s/content/StudyInstanceUID' % mr2).strip('\x00') |
f0d4c4707e64
test_anonymize_relationships_3
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
132
diff
changeset
|
3897 |
f0d4c4707e64
test_anonymize_relationships_3
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
132
diff
changeset
|
3898 PATH1 = '/instances/%s/content/CurrentRequestedProcedureEvidenceSequence' |
f0d4c4707e64
test_anonymize_relationships_3
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
132
diff
changeset
|
3899 PATH2 = PATH1 + '/0/ReferencedSeriesSequence' |
f0d4c4707e64
test_anonymize_relationships_3
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
132
diff
changeset
|
3900 PATH3 = PATH2 + '/0/ReferencedSOPSequence' |
f0d4c4707e64
test_anonymize_relationships_3
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
132
diff
changeset
|
3901 PATH4 = PATH3 + '/0/ReferencedSOPInstanceUID' |
f0d4c4707e64
test_anonymize_relationships_3
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
132
diff
changeset
|
3902 PATH5 = PATH3 + '/0/ReferencedSOPClassUID' |
f0d4c4707e64
test_anonymize_relationships_3
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
132
diff
changeset
|
3903 |
f0d4c4707e64
test_anonymize_relationships_3
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
132
diff
changeset
|
3904 self.assertEqual(1, len(DoGet(_REMOTE, PATH1 % sr1))) |
f0d4c4707e64
test_anonymize_relationships_3
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
132
diff
changeset
|
3905 self.assertEqual(1, len(DoGet(_REMOTE, PATH2 % sr1))) |
f0d4c4707e64
test_anonymize_relationships_3
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
132
diff
changeset
|
3906 self.assertEqual(1, len(DoGet(_REMOTE, PATH3 % sr1))) |
f0d4c4707e64
test_anonymize_relationships_3
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
132
diff
changeset
|
3907 self.assertEqual(DoGet(_REMOTE, PATH4 % sr1), mrUid1) |
f0d4c4707e64
test_anonymize_relationships_3
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
132
diff
changeset
|
3908 self.assertEqual(mrSeries1, DoGet(_REMOTE, (PATH2 + '/0/SeriesInstanceUID') % sr1).strip('\x00')) |
f0d4c4707e64
test_anonymize_relationships_3
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
132
diff
changeset
|
3909 self.assertEqual(mrStudy1, DoGet(_REMOTE, (PATH1 + '/0/StudyInstanceUID') % sr1).strip('\x00')) |
f0d4c4707e64
test_anonymize_relationships_3
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
132
diff
changeset
|
3910 |
f0d4c4707e64
test_anonymize_relationships_3
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
132
diff
changeset
|
3911 self.assertEqual(1, len(DoGet(_REMOTE, PATH1 % sr2))) |
f0d4c4707e64
test_anonymize_relationships_3
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
132
diff
changeset
|
3912 self.assertEqual(1, len(DoGet(_REMOTE, PATH2 % sr2))) |
f0d4c4707e64
test_anonymize_relationships_3
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
132
diff
changeset
|
3913 self.assertEqual(1, len(DoGet(_REMOTE, PATH3 % sr2))) |
f0d4c4707e64
test_anonymize_relationships_3
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
132
diff
changeset
|
3914 self.assertEqual(DoGet(_REMOTE, PATH5 % sr1), DoGet(_REMOTE, PATH5 % sr2)) |
f0d4c4707e64
test_anonymize_relationships_3
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
132
diff
changeset
|
3915 |
f0d4c4707e64
test_anonymize_relationships_3
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
132
diff
changeset
|
3916 self.assertEqual(mrUid2, DoGet(_REMOTE, PATH4 % sr2).strip('\x00')) |
f0d4c4707e64
test_anonymize_relationships_3
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
132
diff
changeset
|
3917 self.assertEqual(mrSeries2, DoGet(_REMOTE, (PATH2 + '/0/SeriesInstanceUID') % sr2).strip('\x00')) |
f0d4c4707e64
test_anonymize_relationships_3
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
132
diff
changeset
|
3918 self.assertEqual(mrStudy2, DoGet(_REMOTE, (PATH1 + '/0/StudyInstanceUID') % sr2).strip('\x00')) |
f0d4c4707e64
test_anonymize_relationships_3
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
132
diff
changeset
|
3919 |
f0d4c4707e64
test_anonymize_relationships_3
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
132
diff
changeset
|
3920 content1 = DoGet(_REMOTE, '/instances/%s/tags?simplify' % sr1) ['ContentSequence'] |
f0d4c4707e64
test_anonymize_relationships_3
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
132
diff
changeset
|
3921 content2 = DoGet(_REMOTE, '/instances/%s/tags?simplify' % sr2) ['ContentSequence'] |
f0d4c4707e64
test_anonymize_relationships_3
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
132
diff
changeset
|
3922 self.assertEqual(str(content1), str(content2)) |
141
5de178abe4d8
test_bitbucket_issue_94
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
138
diff
changeset
|
3923 |
5de178abe4d8
test_bitbucket_issue_94
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
138
diff
changeset
|
3924 |
5de178abe4d8
test_bitbucket_issue_94
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
138
diff
changeset
|
3925 def test_bitbucket_issue_94(self): |
5de178abe4d8
test_bitbucket_issue_94
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
138
diff
changeset
|
3926 # "a simple instance modification should not modify FrameOfReferenceUID + ..." |
319 | 3927 # https://bugs.orthanc-server.com/show_bug.cgi?id=94 |
141
5de178abe4d8
test_bitbucket_issue_94
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
138
diff
changeset
|
3928 i = UploadInstance(_REMOTE, 'Issue94.dcm')['ID'] |
5de178abe4d8
test_bitbucket_issue_94
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
138
diff
changeset
|
3929 |
5de178abe4d8
test_bitbucket_issue_94
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
138
diff
changeset
|
3930 source = DoGet(_REMOTE, '/instances/%s/attachments/dicom/data' % i) |
5de178abe4d8
test_bitbucket_issue_94
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
138
diff
changeset
|
3931 |
5de178abe4d8
test_bitbucket_issue_94
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
138
diff
changeset
|
3932 modified = DoPost(_REMOTE, '/instances/%s/modify' % i, |
5de178abe4d8
test_bitbucket_issue_94
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
138
diff
changeset
|
3933 { "Replace" : {"PatientID" : "toto"}, "Force": True}) |
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test_bitbucket_issue_94
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3934 |
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test_bitbucket_issue_94
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3935 anonymized = DoPost(_REMOTE, '/instances/%s/anonymize' % i) |
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test_bitbucket_issue_94
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3936 |
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test_bitbucket_issue_94
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3937 a = ExtractDicomTags(source, [ 'FrameOfReferenceUID' ]) |
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3938 self.assertEqual(1, len(a)) |
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3939 |
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test_bitbucket_issue_94
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3940 b = ExtractDicomTags(modified, [ 'FrameOfReferenceUID' ]) |
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3941 self.assertEqual(1, len(b)) |
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3942 |
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test_bitbucket_issue_94
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3943 c = ExtractDicomTags(anonymized, [ 'FrameOfReferenceUID' ]) |
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3944 self.assertEqual(1, len(c)) |
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3945 |
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3946 self.assertEqual(a, b) # Modified DICOM |
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3947 self.assertNotEqual(a, c) # Anonymized DICOM |
143
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test_metadata_origin
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3948 |
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3949 |
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3950 def test_metadata_origin(self): |
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3951 # Upload using the REST API |
144
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3952 i = UploadInstance(_REMOTE, 'Knee/T1/IM-0001-0001.dcm')['ID'] |
143
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3953 self.assertEqual('RestApi', DoGet(_REMOTE, '/instances/%s/metadata/Origin' % i)) |
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3954 self.assertEqual('', DoGet(_REMOTE, '/instances/%s/metadata/RemoteAET' % i)) |
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3955 self.assertNotEqual('', DoGet(_REMOTE, '/instances/%s/metadata/RemoteIP' % i)) |
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3956 self.assertRaises(Exception, lambda: DoGet(_REMOTE, '/instances/%s/metadata/CalledAET' % i)) |
315 | 3957 |
3958 # "HttpUsername" is empty iff "AuthenticationEnabled" is "false" | |
3959 self.assertTrue(DoGet(_REMOTE, '/instances/%s/metadata/HttpUsername' % i) in [ '', 'alice' ]) | |
3960 | |
144
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3961 m = DoGet(_REMOTE, '/instances/%s/metadata?expand' % i) |
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3962 self.assertEqual('RestApi', m['Origin']) |
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3963 self.assertEqual('', m['RemoteAET']) |
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3964 self.assertNotEqual('', m['RemoteIP']) |
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3965 self.assertFalse('CalledAET' in m) |
315 | 3966 self.assertTrue('HttpUsername' in m) |
3967 self.assertTrue(m['HttpUsername'] in [ '', 'alice' ]) | |
144
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3968 |
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3969 self.assertEqual('1.2.840.10008.1.2.4.91', m['TransferSyntax']) |
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3970 self.assertEqual('1.2.840.10008.5.1.4.1.1.4', m['SopClassUid']) |
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3971 self.assertEqual('1', m['IndexInSeries']) |
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3972 self.assertTrue('ReceptionDate' in m) |
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3973 |
143
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3974 DoDelete(_REMOTE, '/instances/%s' % i) |
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3975 |
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3976 # Upload using the DICOM protocol |
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3977 subprocess.check_call([ FindExecutable('storescu'), |
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3978 _REMOTE['Server'], str(_REMOTE['DicomPort']), |
144
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diff
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3979 GetDatabasePath('Knee/T1/IM-0001-0001.dcm'), |
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3980 '-xw' ]) # Propose JPEG2000 |
143
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3981 self.assertEqual('DicomProtocol', DoGet(_REMOTE, '/instances/%s/metadata/Origin' % i)) |
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3982 self.assertEqual('STORESCU', DoGet(_REMOTE, '/instances/%s/metadata/RemoteAET' % i)) |
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3983 self.assertNotEqual('', DoGet(_REMOTE, '/instances/%s/metadata/RemoteIP' % i)) |
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3984 self.assertEqual('ANY-SCP', DoGet(_REMOTE, '/instances/%s/metadata/CalledAET' % i)) |
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3985 self.assertRaises(Exception, lambda: DoGet(_REMOTE, '/instances/%s/metadata/HttpUsername' % i)) |
144
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3986 |
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3987 m = DoGet(_REMOTE, '/instances/%s/metadata?expand' % i) |
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3988 self.assertEqual('DicomProtocol', m['Origin']) |
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3989 self.assertEqual('STORESCU', m['RemoteAET']) |
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3990 self.assertNotEqual('', m['RemoteIP']) |
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3991 self.assertEqual('ANY-SCP', m['CalledAET']) |
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3992 self.assertFalse('HttpUsername' in m) |
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3993 |
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3994 self.assertEqual('1.2.840.10008.1.2.4.91', m['TransferSyntax']) |
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3995 self.assertEqual('1.2.840.10008.5.1.4.1.1.4', m['SopClassUid']) |
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3996 self.assertEqual('1', m['IndexInSeries']) |
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3997 self.assertTrue('ReceptionDate' in m) |
147 | 3998 |
3999 | |
4000 def test_lua_deadlock(self): | |
4001 # Rana Asim Wajid (2018-07-14): "It does seem that the issue | |
4002 # is with the lua script I'm using for conversion of images to | |
4003 # JPEG2000. When the script is used with 1.4.0 the first | |
4004 # instance appears to be stored and then everything just | |
4005 # halts, ie Orthanc wont respond to anything after that." | |
4006 # https://groups.google.com/d/msg/orthanc-users/Rc-Beb42xc8/JUgdzrmCAgAJ | |
174 | 4007 InstallLuaScriptFromPath(_REMOTE, 'Lua/Jpeg2000Conversion.lua') |
147 | 4008 |
4009 subprocess.check_call([ FindExecutable('storescu'), | |
4010 _REMOTE['Server'], str(_REMOTE['DicomPort']), | |
4011 GetDatabasePath('Brainix/Flair/IM-0001-0001.dcm'), | |
4012 GetDatabasePath('Brainix/Flair/IM-0001-0002.dcm'), | |
4013 ]) | |
4014 | |
4015 instances = DoGet(_REMOTE, '/instances') | |
4016 self.assertEqual(2, len(instances)) | |
4017 | |
4018 t1 = DoGet(_REMOTE, '/instances/%s/metadata/TransferSyntax' % instances[0]) | |
4019 t2 = DoGet(_REMOTE, '/instances/%s/metadata/TransferSyntax' % instances[1]) | |
175 | 4020 self.assertEqual('1.2.840.10008.1.2.4.90', t1) # this will fail if libgdcm-tools is not installed |
147 | 4021 self.assertEqual(t1, t2); |
154
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diff
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4022 |
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test_find_group_length
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diff
changeset
|
4023 |
4a533d003080
test_find_group_length
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diff
changeset
|
4024 def test_find_group_length(self): |
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test_find_group_length
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diff
changeset
|
4025 # Orthanc <= 1.4.1 fails to answer C-FIND queries that contain |
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test_find_group_length
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diff
changeset
|
4026 # one of the Generic Group Length tags (*, 0x0000) |
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test_find_group_length
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diff
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|
4027 a = UploadInstance(_REMOTE, 'Brainix/Flair/IM-0001-0001.dcm')['ID'] |
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test_find_group_length
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diff
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|
4028 result = CallFindScu([ '-k', '0008,0052=STUDY', '-k', '0008,0000=80' ]) |
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|
4029 self.assertFalse('UnableToProcess' in result) |
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test_find_group_length
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diff
changeset
|
4030 self.assertFalse('E:' in result) |
179
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4031 |
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diff
changeset
|
4032 |
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changeset
|
4033 def test_split(self): |
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diff
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4034 UploadInstance(_REMOTE, 'Knee/T1/IM-0001-0001.dcm') |
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|
4035 UploadInstance(_REMOTE, 'Knee/T2/IM-0001-0001.dcm') |
254
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diff
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|
4036 knee1Sop = '1.3.46.670589.11.17521.5.0.3124.2008081908590448738' |
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diff
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|
4037 knee2Sop = '1.3.46.670589.11.17521.5.0.3124.2008081909113806560' |
179
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diff
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|
4038 study = '0a9b3153-2512774b-2d9580de-1fc3dcf6-3bd83918' |
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diff
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4039 t1 = '6de73705-c4e65c1b-9d9ea1b5-cabcd8e7-f15e4285' |
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diff
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4040 t2 = 'bbf7a453-0d34251a-03663b55-46bb31b9-ffd74c59' |
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diff
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4041 |
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4042 self.assertEqual(1, len(DoGet(_REMOTE, '/studies'))) |
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4043 self.assertEqual(2, len(DoGet(_REMOTE, '/series'))) |
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4044 |
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4045 info = DoGet(_REMOTE, '/studies/%s' % study) |
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diff
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4046 self.assertTrue('ReferringPhysicianName' in info['MainDicomTags']) |
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diff
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|
4047 |
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|
4048 job = MonitorJob2(_REMOTE, lambda: DoPost |
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diff
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|
4049 (_REMOTE, '/studies/%s/split' % study, { |
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diff
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4050 'Series' : [ t2 ], |
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diff
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4051 'Replace' : { 'PatientName' : 'Hello' }, |
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|
4052 'Remove' : [ 'ReferringPhysicianName' ], |
181 | 4053 'KeepSource' : False, |
4054 'Asynchronous' : True | |
179
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|
4055 })) |
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diff
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4056 |
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|
4057 self.assertNotEqual(None, job) |
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diff
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|
4058 |
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changeset
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4059 studies = set(DoGet(_REMOTE, '/studies')) |
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4060 self.assertEqual(2, len(studies)) |
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diff
changeset
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4061 |
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changeset
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4062 series = set(DoGet(_REMOTE, '/series')) |
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4063 self.assertEqual(2, len(series)) |
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4064 self.assertTrue(t1 in series) |
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changeset
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4065 |
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|
4066 study2 = DoGet(_REMOTE, '/jobs/%s' % job)['Content']['TargetStudy'] |
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4067 self.assertTrue(study in studies) |
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4068 self.assertTrue(study2 in studies) |
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4069 |
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4070 info = DoGet(_REMOTE, '/studies/%s' % study2) |
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4071 self.assertTrue('Hello', info['PatientMainDicomTags']['PatientName']) |
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4072 self.assertFalse('ReferringPhysicianName' in info['MainDicomTags']) |
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4073 |
254
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4074 sopInstanceUids = set() |
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4075 for i in DoGet(_REMOTE, '/instances?expand'): |
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4076 sopInstanceUids.add(i['MainDicomTags']['SOPInstanceUID']) |
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4077 |
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4078 self.assertTrue(knee1Sop in sopInstanceUids) |
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4079 |
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4080 # Fails if Orthanc <= 1.5.7 |
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4081 self.assertFalse(knee2Sop in sopInstanceUids) # Because "KeepSource" is False |
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4082 |
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4083 # One original instance is kept, another one is added because of the split |
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4084 self.assertEqual(2, len(sopInstanceUids)) |
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4085 |
179
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4086 |
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4087 def test_merge(self): |
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4088 UploadInstance(_REMOTE, 'Knee/T1/IM-0001-0001.dcm') |
254
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4089 UploadInstance(_REMOTE, 'Brainix/Flair/IM-0001-0001.dcm') |
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4090 kneeSop = '1.3.46.670589.11.17521.5.0.3124.2008081908590448738' |
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4091 brainixSop = '1.3.46.670589.11.0.0.11.4.2.0.8743.5.5396.2006120114314079549' |
179
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4092 knee = '0a9b3153-2512774b-2d9580de-1fc3dcf6-3bd83918' |
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4093 t1 = '6de73705-c4e65c1b-9d9ea1b5-cabcd8e7-f15e4285' |
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4094 brainix = '27f7126f-4f66fb14-03f4081b-f9341db2-53925988' |
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4095 flair = '1e2c125c-411b8e86-3f4fe68e-a7584dd3-c6da78f0' |
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4096 |
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4097 self.assertEqual(2, len(DoGet(_REMOTE, '/studies'))) |
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4098 self.assertEqual(2, len(DoGet(_REMOTE, '/series'))) |
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4099 |
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4100 job = MonitorJob2(_REMOTE, lambda: DoPost |
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4101 (_REMOTE, '/studies/%s/merge' % knee, { |
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4102 'Resources' : [ brainix ], |
181 | 4103 'KeepSource' : True, |
4104 'Synchronous' : False | |
179
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4105 })) |
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4106 |
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4107 self.assertNotEqual(None, job) |
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4108 |
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4109 studies = set(DoGet(_REMOTE, '/studies')) |
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4110 self.assertEqual(2, len(studies)) |
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4111 self.assertTrue(knee in studies) |
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4112 self.assertTrue(brainix in studies) |
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4113 |
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4114 series = set(DoGet(_REMOTE, '/studies/%s' % knee)['Series']) |
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4115 self.assertTrue(t1 in series) |
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4116 series.remove(t1) |
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4117 self.assertEqual(1, len(series)) |
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4118 |
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4119 instances = DoGet(_REMOTE, '/series/%s' % list(series)[0])['Instances'] |
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4120 self.assertEqual(1, len(instances)) |
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4121 merged = DoGet(_REMOTE, '/instances/%s/tags?simplify' % instances[0]) |
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4122 |
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4123 instances = DoGet(_REMOTE, '/series/%s' % t1)['Instances'] |
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4124 self.assertEqual(1, len(instances)) |
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4125 a = DoGet(_REMOTE, '/instances/%s/tags?simplify' % instances[0]) |
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4126 |
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4127 instances = DoGet(_REMOTE, '/series/%s' % flair)['Instances'] |
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4128 self.assertEqual(1, len(instances)) |
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4129 b = DoGet(_REMOTE, '/instances/%s/tags?simplify' % instances[0]) |
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4130 |
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4131 tags = DoGet(_REMOTE, '/studies/%s' % knee) |
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4132 |
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4133 for key in tags['PatientMainDicomTags']: |
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4134 self.assertEqual(a[key], merged[key]) |
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4135 if (key in b and key != 'PatientSex'): |
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4136 self.assertNotEqual(a[key], b[key]) |
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4137 |
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4138 for key in tags['MainDicomTags']: |
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4139 # Not in the patient/study module |
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4140 if (not key in [ 'InstitutionName', |
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4141 'RequestingPhysician', |
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4142 'RequestedProcedureDescription', ]): |
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4143 self.assertEqual(a[key], merged[key]) |
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4144 if (key in b): |
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4145 self.assertNotEqual(a[key], b[key]) |
254
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4146 |
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4147 sopInstanceUids = set() |
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4148 for i in DoGet(_REMOTE, '/instances?expand'): |
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4149 sopInstanceUids.add(i['MainDicomTags']['SOPInstanceUID']) |
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4150 |
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4151 self.assertTrue(kneeSop in sopInstanceUids) |
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4152 self.assertTrue(brainixSop in sopInstanceUids) |
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4153 |
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4154 # Fails if Orthanc <= 1.5.7 |
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4155 # The 2 original instances are kept, another one is added because of the merge |
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4156 self.assertEqual(3, len(sopInstanceUids)) |
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4157 |
187 | 4158 |
4159 def test_async_archive(self): | |
4160 # Testing the asynchronous generation of archives/medias (new | |
4161 # in Orthanc 1.4.3) | |
4162 UploadInstance(_REMOTE, 'Knee/T1/IM-0001-0001.dcm') | |
4163 UploadInstance(_REMOTE, 'Knee/T2/IM-0001-0001.dcm') | |
4164 | |
4165 kneeT1 = '6de73705-c4e65c1b-9d9ea1b5-cabcd8e7-f15e4285' | |
4166 kneeT2 = 'bbf7a453-0d34251a-03663b55-46bb31b9-ffd74c59' | |
4167 | |
4168 job = MonitorJob2(_REMOTE, lambda: DoPost | |
4169 (_REMOTE, '/studies/%s/archive' % kneeT1, { | |
4170 'Synchronous' : False | |
4171 })) | |
4172 | |
4173 z = GetArchive(_REMOTE, '/jobs/%s/archive' % job) | |
4174 self.assertEqual(1, len(z.namelist())) | |
4175 self.assertFalse('DICOMDIR' in z.namelist()) | |
4176 | |
4177 job2 = MonitorJob2(_REMOTE, lambda: DoPost | |
4178 (_REMOTE, '/studies/%s/media' % kneeT1, { | |
4179 'Synchronous' : False | |
4180 })) | |
4181 | |
4182 # The archive from the first job has been replaced by the | |
4183 # archive from second job (as MediaArchiveSize == 1) | |
4184 self.assertRaises(Exception, lambda: GetArchive(_REMOTE, '/jobs/%s/archive' % job)) | |
4185 | |
4186 z = GetArchive(_REMOTE, '/jobs/%s/archive' % job2) | |
4187 self.assertEqual(2, len(z.namelist())) | |
4188 self.assertTrue('DICOMDIR' in z.namelist()) | |
4189 | |
4190 job = MonitorJob2(_REMOTE, lambda: DoPost | |
4191 (_REMOTE, '/tools/create-archive', { | |
4192 'Synchronous' : False, | |
4193 'Resources' : [ kneeT1, kneeT2 ], | |
4194 })) | |
4195 | |
4196 z = GetArchive(_REMOTE, '/jobs/%s/archive' % job) | |
4197 self.assertEqual(2, len(z.namelist())) | |
4198 self.assertFalse('DICOMDIR' in z.namelist()) | |
4199 | |
4200 job = MonitorJob2(_REMOTE, lambda: DoPost | |
4201 (_REMOTE, '/tools/create-media', { | |
4202 'Synchronous' : False, | |
4203 'Resources' : [ kneeT1, kneeT2 ], | |
4204 })) | |
4205 | |
4206 z = GetArchive(_REMOTE, '/jobs/%s/archive' % job) | |
4207 self.assertEqual(3, len(z.namelist())) | |
4208 self.assertTrue('DICOMDIR' in z.namelist()) | |
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4209 |
187 | 4210 |
188
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4211 def test_queries_hierarchy(self): |
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4212 UploadInstance(_REMOTE, 'Knee/T1/IM-0001-0001.dcm') |
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4213 UploadInstance(_REMOTE, 'Brainix/Flair/IM-0001-0001.dcm') |
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4214 |
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4215 tags = { |
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4216 'NumberOfPatientRelatedInstances' : '', |
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4217 'NumberOfPatientRelatedSeries' : '', |
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changeset
|
4218 'NumberOfPatientRelatedStudies' : '', |
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diff
changeset
|
4219 'NumberOfStudyRelatedInstances' : '', |
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diff
changeset
|
4220 'NumberOfStudyRelatedSeries' : '', |
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diff
changeset
|
4221 'NumberOfSeriesRelatedInstances' : '', |
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diff
changeset
|
4222 } |
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diff
changeset
|
4223 |
189
11719f19bd62
test_dicom_disk_size
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diff
changeset
|
4224 tags2 = copy.copy(tags) |
11719f19bd62
test_dicom_disk_size
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diff
changeset
|
4225 tags2['PatientID'] = '887' # Only consider the "Knee" patient |
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test_dicom_disk_size
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diff
changeset
|
4226 |
188
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diff
changeset
|
4227 patient = DoPost(_REMOTE, '/modalities/self/query', { |
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|
4228 'Level' : 'Patient', |
189
11719f19bd62
test_dicom_disk_size
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diff
changeset
|
4229 'Query' : tags2 |
188
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diff
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|
4230 }) ['ID'] |
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diff
changeset
|
4231 |
7d585263808b
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diff
changeset
|
4232 study = DoPost(_REMOTE, '/modalities/self/query', { |
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diff
changeset
|
4233 'Level' : 'Study', |
189
11719f19bd62
test_dicom_disk_size
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diff
changeset
|
4234 'Query' : tags2 |
188
7d585263808b
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diff
changeset
|
4235 }) ['ID'] |
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diff
changeset
|
4236 |
7d585263808b
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diff
changeset
|
4237 series = DoPost(_REMOTE, '/modalities/self/query', { |
7d585263808b
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diff
changeset
|
4238 'Level' : 'Series', |
189
11719f19bd62
test_dicom_disk_size
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188
diff
changeset
|
4239 'Query' : tags2 |
188
7d585263808b
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diff
changeset
|
4240 }) ['ID'] |
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diff
changeset
|
4241 |
7d585263808b
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diff
changeset
|
4242 instance = DoPost(_REMOTE, '/modalities/self/query', { |
7d585263808b
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diff
changeset
|
4243 'Level' : 'Instance', |
189
11719f19bd62
test_dicom_disk_size
Sebastien Jodogne <s.jodogne@gmail.com>
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188
diff
changeset
|
4244 'Query' : tags2 |
188
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diff
changeset
|
4245 }) ['ID'] |
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diff
changeset
|
4246 |
7d585263808b
new test: test_queries_hierarchy
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diff
changeset
|
4247 p = DoGet(_REMOTE, '/queries/%s/answers?expand&simplify' % patient) |
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diff
changeset
|
4248 self.assertEqual(1, len(p)) |
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changeset
|
4249 self.assertEqual('887', p[0]['PatientID']) |
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diff
changeset
|
4250 self.assertEqual('1', p[0]['NumberOfPatientRelatedInstances']) |
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diff
changeset
|
4251 self.assertEqual('1', p[0]['NumberOfPatientRelatedSeries']) |
7d585263808b
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diff
changeset
|
4252 self.assertEqual('1', p[0]['NumberOfPatientRelatedStudies']) |
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diff
changeset
|
4253 self.assertFalse('NumberOfStudyRelatedInstances' in p[0]) |
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diff
changeset
|
4254 self.assertFalse('NumberOfStudyRelatedSeries' in p[0]) |
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diff
changeset
|
4255 self.assertFalse('NumberOfSeriesRelatedInstances' in p[0]) |
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diff
changeset
|
4256 |
7d585263808b
new test: test_queries_hierarchy
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diff
changeset
|
4257 p = DoGet(_REMOTE, '/queries/%s/answers?expand&simplify' % study) |
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diff
changeset
|
4258 self.assertEqual(1, len(p)) |
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|
4259 self.assertEqual('2.16.840.1.113669.632.20.121711.10000160881', p[0]['StudyInstanceUID']) |
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diff
changeset
|
4260 self.assertEqual('1', p[0]['NumberOfStudyRelatedInstances']) |
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diff
changeset
|
4261 self.assertEqual('1', p[0]['NumberOfStudyRelatedSeries']) |
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diff
changeset
|
4262 self.assertFalse('NumberOfPatientRelatedInstances' in p[0]) |
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new test: test_queries_hierarchy
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diff
changeset
|
4263 self.assertFalse('NumberOfPatientRelatedSeries' in p[0]) |
7d585263808b
new test: test_queries_hierarchy
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diff
changeset
|
4264 self.assertFalse('NumberOfPatientRelatedInstances' in p[0]) |
7d585263808b
new test: test_queries_hierarchy
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diff
changeset
|
4265 self.assertFalse('NumberOfSeriesRelatedInstances' in p[0]) |
7d585263808b
new test: test_queries_hierarchy
Sebastien Jodogne <s.jodogne@gmail.com>
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diff
changeset
|
4266 |
7d585263808b
new test: test_queries_hierarchy
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diff
changeset
|
4267 p = DoGet(_REMOTE, '/queries/%s/answers?expand&simplify' % series) |
7d585263808b
new test: test_queries_hierarchy
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diff
changeset
|
4268 self.assertEqual(1, len(p)) |
7d585263808b
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diff
changeset
|
4269 self.assertEqual('1.3.46.670589.11.17521.5.0.3124.2008081908564160709', p[0]['SeriesInstanceUID']) |
7d585263808b
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Sebastien Jodogne <s.jodogne@gmail.com>
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diff
changeset
|
4270 self.assertEqual('1', p[0]['NumberOfSeriesRelatedInstances']) |
7d585263808b
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diff
changeset
|
4271 self.assertFalse('NumberOfPatientRelatedInstances' in p[0]) |
7d585263808b
new test: test_queries_hierarchy
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diff
changeset
|
4272 self.assertFalse('NumberOfPatientRelatedSeries' in p[0]) |
7d585263808b
new test: test_queries_hierarchy
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
changeset
|
4273 self.assertFalse('NumberOfPatientRelatedInstances' in p[0]) |
7d585263808b
new test: test_queries_hierarchy
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
changeset
|
4274 self.assertFalse('NumberOfStudyRelatedInstances' in p[0]) |
7d585263808b
new test: test_queries_hierarchy
Sebastien Jodogne <s.jodogne@gmail.com>
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diff
changeset
|
4275 self.assertFalse('NumberOfStudyRelatedSeries' in p[0]) |
7d585263808b
new test: test_queries_hierarchy
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
changeset
|
4276 |
7d585263808b
new test: test_queries_hierarchy
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diff
changeset
|
4277 p = DoGet(_REMOTE, '/queries/%s/answers?expand&simplify' % instance) |
7d585263808b
new test: test_queries_hierarchy
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diff
changeset
|
4278 self.assertEqual(1, len(p)) |
7d585263808b
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187
diff
changeset
|
4279 self.assertEqual('1.3.46.670589.11.17521.5.0.3124.2008081908590448738', p[0]['SOPInstanceUID']) |
7d585263808b
new test: test_queries_hierarchy
Sebastien Jodogne <s.jodogne@gmail.com>
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diff
changeset
|
4280 |
7d585263808b
new test: test_queries_hierarchy
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diff
changeset
|
4281 j = DoPost(_REMOTE, '/queries/%s/answers/0/query-studies' % patient, |
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new test: test_queries_hierarchy
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diff
changeset
|
4282 { 'Query' : tags }) ['ID'] |
7d585263808b
new test: test_queries_hierarchy
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parents:
187
diff
changeset
|
4283 self.assertEqual(DoGet(_REMOTE, '/queries/%s/answers?expand&simplify' % j), |
7d585263808b
new test: test_queries_hierarchy
Sebastien Jodogne <s.jodogne@gmail.com>
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187
diff
changeset
|
4284 DoGet(_REMOTE, '/queries/%s/answers?expand&simplify' % study)) |
189
11719f19bd62
test_dicom_disk_size
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
188
diff
changeset
|
4285 |
188
7d585263808b
new test: test_queries_hierarchy
Sebastien Jodogne <s.jodogne@gmail.com>
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diff
changeset
|
4286 j = DoPost(_REMOTE, '/queries/%s/answers/0/query-series' % patient, |
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diff
changeset
|
4287 { 'Query' : tags }) ['ID'] |
7d585263808b
new test: test_queries_hierarchy
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
187
diff
changeset
|
4288 self.assertEqual(DoGet(_REMOTE, '/queries/%s/answers?expand&simplify' % j), |
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Sebastien Jodogne <s.jodogne@gmail.com>
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diff
changeset
|
4289 DoGet(_REMOTE, '/queries/%s/answers?expand&simplify' % series)) |
7d585263808b
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Sebastien Jodogne <s.jodogne@gmail.com>
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diff
changeset
|
4290 |
7d585263808b
new test: test_queries_hierarchy
Sebastien Jodogne <s.jodogne@gmail.com>
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diff
changeset
|
4291 j = DoPost(_REMOTE, '/queries/%s/answers/0/query-instances' % patient, |
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diff
changeset
|
4292 { 'Query' : tags }) ['ID'] |
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diff
changeset
|
4293 self.assertEqual(DoGet(_REMOTE, '/queries/%s/answers?expand&simplify' % j), |
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Sebastien Jodogne <s.jodogne@gmail.com>
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diff
changeset
|
4294 DoGet(_REMOTE, '/queries/%s/answers?expand&simplify' % instance)) |
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diff
changeset
|
4295 |
7d585263808b
new test: test_queries_hierarchy
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diff
changeset
|
4296 j = DoPost(_REMOTE, '/queries/%s/answers/0/query-series' % study, |
7d585263808b
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Sebastien Jodogne <s.jodogne@gmail.com>
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diff
changeset
|
4297 { 'Query' : tags }) ['ID'] |
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diff
changeset
|
4298 self.assertEqual(DoGet(_REMOTE, '/queries/%s/answers?expand&simplify' % j), |
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diff
changeset
|
4299 DoGet(_REMOTE, '/queries/%s/answers?expand&simplify' % series)) |
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diff
changeset
|
4300 |
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diff
changeset
|
4301 j = DoPost(_REMOTE, '/queries/%s/answers/0/query-instances' % study, |
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diff
changeset
|
4302 { 'Query' : tags }) ['ID'] |
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diff
changeset
|
4303 self.assertEqual(DoGet(_REMOTE, '/queries/%s/answers?expand&simplify' % j), |
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diff
changeset
|
4304 DoGet(_REMOTE, '/queries/%s/answers?expand&simplify' % instance)) |
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diff
changeset
|
4305 |
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new test: test_queries_hierarchy
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diff
changeset
|
4306 j = DoPost(_REMOTE, '/queries/%s/answers/0/query-instances' % series, |
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diff
changeset
|
4307 { 'Query' : tags }) ['ID'] |
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diff
changeset
|
4308 self.assertEqual(DoGet(_REMOTE, '/queries/%s/answers?expand&simplify' % j), |
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diff
changeset
|
4309 DoGet(_REMOTE, '/queries/%s/answers?expand&simplify' % instance)) |
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diff
changeset
|
4310 |
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diff
changeset
|
4311 |
189
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test_dicom_disk_size
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diff
changeset
|
4312 def test_dicom_disk_size(self): |
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|
4313 dicomSize = 0 |
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changeset
|
4314 |
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test_dicom_disk_size
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diff
changeset
|
4315 UploadInstance(_REMOTE, 'Brainix/Flair/IM-0001-0001.dcm') |
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test_dicom_disk_size
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diff
changeset
|
4316 |
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test_dicom_disk_size
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diff
changeset
|
4317 for i in range(2): |
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test_dicom_disk_size
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diff
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|
4318 p = 'Knee/T%d/IM-0001-0001.dcm' % (i + 1) |
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diff
changeset
|
4319 UploadInstance(_REMOTE, p) |
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test_dicom_disk_size
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diff
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|
4320 dicomSize += os.path.getsize(GetDatabasePath(p)) |
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test_dicom_disk_size
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diff
changeset
|
4321 |
11719f19bd62
test_dicom_disk_size
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
188
diff
changeset
|
4322 s = DoGet(_REMOTE, '/patients/ca29faea-b6a0e17f-067743a1-8b778011-a48b2a17/statistics') # Consider Knee patient |
11719f19bd62
test_dicom_disk_size
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
188
diff
changeset
|
4323 self.assertEqual(2, s['CountInstances']) |
11719f19bd62
test_dicom_disk_size
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
188
diff
changeset
|
4324 self.assertEqual(2, s['CountSeries']) |
11719f19bd62
test_dicom_disk_size
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
188
diff
changeset
|
4325 self.assertEqual(1, s['CountStudies']) |
11719f19bd62
test_dicom_disk_size
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
188
diff
changeset
|
4326 self.assertEqual(dicomSize, int(s['DicomDiskSize'])) |
11719f19bd62
test_dicom_disk_size
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
188
diff
changeset
|
4327 self.assertEqual(dicomSize, int(s['DicomUncompressedSize'])) |
11719f19bd62
test_dicom_disk_size
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
188
diff
changeset
|
4328 self.assertLess(dicomSize, int(s['UncompressedSize'])) |
11719f19bd62
test_dicom_disk_size
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
188
diff
changeset
|
4329 self.assertEqual(s['UncompressedSize'], s['DiskSize']) |
11719f19bd62
test_dicom_disk_size
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
188
diff
changeset
|
4330 |
202
f26f9ae9c599
test_changes_2 and test_bitbucket_issue_124
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
195
diff
changeset
|
4331 |
f26f9ae9c599
test_changes_2 and test_bitbucket_issue_124
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
195
diff
changeset
|
4332 def test_changes_2(self): |
f26f9ae9c599
test_changes_2 and test_bitbucket_issue_124
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
195
diff
changeset
|
4333 # More consistent behavior since Orthanc 1.5.2 |
f26f9ae9c599
test_changes_2 and test_bitbucket_issue_124
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
195
diff
changeset
|
4334 # https://groups.google.com/d/msg/orthanc-users/QhzB6vxYeZ0/YxabgqpfBAAJ |
f26f9ae9c599
test_changes_2 and test_bitbucket_issue_124
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
195
diff
changeset
|
4335 |
f26f9ae9c599
test_changes_2 and test_bitbucket_issue_124
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
195
diff
changeset
|
4336 # Make sure that this is not the first change |
f26f9ae9c599
test_changes_2 and test_bitbucket_issue_124
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
195
diff
changeset
|
4337 self.assertEqual(0, len(DoGet(_REMOTE, '/instances'))) |
f26f9ae9c599
test_changes_2 and test_bitbucket_issue_124
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
195
diff
changeset
|
4338 a = UploadInstance(_REMOTE, 'DummyCT.dcm')['ID'] |
f26f9ae9c599
test_changes_2 and test_bitbucket_issue_124
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
195
diff
changeset
|
4339 self.assertEqual(1, len(DoGet(_REMOTE, '/instances'))) |
f26f9ae9c599
test_changes_2 and test_bitbucket_issue_124
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
195
diff
changeset
|
4340 DoDelete(_REMOTE, '/instances/%s' % a) |
f26f9ae9c599
test_changes_2 and test_bitbucket_issue_124
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
195
diff
changeset
|
4341 |
f26f9ae9c599
test_changes_2 and test_bitbucket_issue_124
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
195
diff
changeset
|
4342 # No more instance, but there were previous changes |
f26f9ae9c599
test_changes_2 and test_bitbucket_issue_124
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
195
diff
changeset
|
4343 self.assertEqual(0, len(DoGet(_REMOTE, '/instances'))) |
f26f9ae9c599
test_changes_2 and test_bitbucket_issue_124
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
195
diff
changeset
|
4344 |
f26f9ae9c599
test_changes_2 and test_bitbucket_issue_124
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
195
diff
changeset
|
4345 c = DoGet(_REMOTE, '/changes') |
f26f9ae9c599
test_changes_2 and test_bitbucket_issue_124
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
195
diff
changeset
|
4346 self.assertEqual(0, len(c['Changes'])) |
f26f9ae9c599
test_changes_2 and test_bitbucket_issue_124
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
195
diff
changeset
|
4347 self.assertTrue(c['Done']) |
f26f9ae9c599
test_changes_2 and test_bitbucket_issue_124
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
195
diff
changeset
|
4348 seq = c['Last'] |
f26f9ae9c599
test_changes_2 and test_bitbucket_issue_124
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
195
diff
changeset
|
4349 |
f26f9ae9c599
test_changes_2 and test_bitbucket_issue_124
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
195
diff
changeset
|
4350 c = DoGet(_REMOTE, '/changes?last') |
f26f9ae9c599
test_changes_2 and test_bitbucket_issue_124
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
195
diff
changeset
|
4351 self.assertEqual(0, len(c['Changes'])) |
f26f9ae9c599
test_changes_2 and test_bitbucket_issue_124
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
195
diff
changeset
|
4352 self.assertTrue(c['Done']) |
f26f9ae9c599
test_changes_2 and test_bitbucket_issue_124
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
195
diff
changeset
|
4353 self.assertEqual(seq, c['Last']) |
f26f9ae9c599
test_changes_2 and test_bitbucket_issue_124
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
195
diff
changeset
|
4354 |
f26f9ae9c599
test_changes_2 and test_bitbucket_issue_124
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
195
diff
changeset
|
4355 c = DoGet(_REMOTE, '/changes?since=%d' % (seq + 1000)) |
f26f9ae9c599
test_changes_2 and test_bitbucket_issue_124
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
195
diff
changeset
|
4356 self.assertEqual(0, len(c['Changes'])) |
f26f9ae9c599
test_changes_2 and test_bitbucket_issue_124
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
195
diff
changeset
|
4357 self.assertTrue(c['Done']) |
f26f9ae9c599
test_changes_2 and test_bitbucket_issue_124
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
195
diff
changeset
|
4358 self.assertEqual(seq, c['Last']) |
f26f9ae9c599
test_changes_2 and test_bitbucket_issue_124
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
195
diff
changeset
|
4359 |
f26f9ae9c599
test_changes_2 and test_bitbucket_issue_124
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
195
diff
changeset
|
4360 # Add one instance |
f26f9ae9c599
test_changes_2 and test_bitbucket_issue_124
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
195
diff
changeset
|
4361 UploadInstance(_REMOTE, 'DummyCT.dcm') |
f26f9ae9c599
test_changes_2 and test_bitbucket_issue_124
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
195
diff
changeset
|
4362 self.assertEqual(1, len(DoGet(_REMOTE, '/instances'))) |
f26f9ae9c599
test_changes_2 and test_bitbucket_issue_124
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
195
diff
changeset
|
4363 |
f26f9ae9c599
test_changes_2 and test_bitbucket_issue_124
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
195
diff
changeset
|
4364 c = DoGet(_REMOTE, '/changes') |
f26f9ae9c599
test_changes_2 and test_bitbucket_issue_124
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
195
diff
changeset
|
4365 self.assertEqual(4, len(c['Changes'])) |
f26f9ae9c599
test_changes_2 and test_bitbucket_issue_124
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
195
diff
changeset
|
4366 self.assertTrue(c['Done']) |
f26f9ae9c599
test_changes_2 and test_bitbucket_issue_124
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
195
diff
changeset
|
4367 self.assertEqual(seq + 4, c['Last']) |
f26f9ae9c599
test_changes_2 and test_bitbucket_issue_124
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
195
diff
changeset
|
4368 |
f26f9ae9c599
test_changes_2 and test_bitbucket_issue_124
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
195
diff
changeset
|
4369 c = DoGet(_REMOTE, '/changes?last') |
f26f9ae9c599
test_changes_2 and test_bitbucket_issue_124
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
195
diff
changeset
|
4370 self.assertEqual(1, len(c['Changes'])) |
f26f9ae9c599
test_changes_2 and test_bitbucket_issue_124
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
195
diff
changeset
|
4371 self.assertTrue(c['Done']) |
f26f9ae9c599
test_changes_2 and test_bitbucket_issue_124
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
195
diff
changeset
|
4372 self.assertEqual(seq + 4, c['Last']) |
f26f9ae9c599
test_changes_2 and test_bitbucket_issue_124
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
195
diff
changeset
|
4373 |
f26f9ae9c599
test_changes_2 and test_bitbucket_issue_124
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
195
diff
changeset
|
4374 c = DoGet(_REMOTE, '/changes?since=%d' % (seq + 1000)) |
f26f9ae9c599
test_changes_2 and test_bitbucket_issue_124
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
195
diff
changeset
|
4375 self.assertEqual(0, len(c['Changes'])) |
f26f9ae9c599
test_changes_2 and test_bitbucket_issue_124
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
195
diff
changeset
|
4376 self.assertTrue(c['Done']) |
f26f9ae9c599
test_changes_2 and test_bitbucket_issue_124
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
195
diff
changeset
|
4377 self.assertEqual(seq + 4, c['Last']) |
f26f9ae9c599
test_changes_2 and test_bitbucket_issue_124
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
195
diff
changeset
|
4378 |
f26f9ae9c599
test_changes_2 and test_bitbucket_issue_124
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
195
diff
changeset
|
4379 # Remove the uploaded instance |
f26f9ae9c599
test_changes_2 and test_bitbucket_issue_124
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
195
diff
changeset
|
4380 DoDelete(_REMOTE, '/instances/%s' % a) |
f26f9ae9c599
test_changes_2 and test_bitbucket_issue_124
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
195
diff
changeset
|
4381 self.assertEqual(0, len(DoGet(_REMOTE, '/instances'))) |
f26f9ae9c599
test_changes_2 and test_bitbucket_issue_124
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
195
diff
changeset
|
4382 |
f26f9ae9c599
test_changes_2 and test_bitbucket_issue_124
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
195
diff
changeset
|
4383 c = DoGet(_REMOTE, '/changes') |
f26f9ae9c599
test_changes_2 and test_bitbucket_issue_124
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
195
diff
changeset
|
4384 self.assertEqual(0, len(c['Changes'])) |
f26f9ae9c599
test_changes_2 and test_bitbucket_issue_124
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
195
diff
changeset
|
4385 self.assertTrue(c['Done']) |
f26f9ae9c599
test_changes_2 and test_bitbucket_issue_124
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
195
diff
changeset
|
4386 self.assertEqual(seq + 4, c['Last']) |
f26f9ae9c599
test_changes_2 and test_bitbucket_issue_124
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
195
diff
changeset
|
4387 |
f26f9ae9c599
test_changes_2 and test_bitbucket_issue_124
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
195
diff
changeset
|
4388 c = DoGet(_REMOTE, '/changes?last') |
f26f9ae9c599
test_changes_2 and test_bitbucket_issue_124
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
195
diff
changeset
|
4389 self.assertEqual(0, len(c['Changes'])) |
f26f9ae9c599
test_changes_2 and test_bitbucket_issue_124
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
195
diff
changeset
|
4390 self.assertTrue(c['Done']) |
f26f9ae9c599
test_changes_2 and test_bitbucket_issue_124
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
195
diff
changeset
|
4391 self.assertEqual(seq + 4, c['Last']) |
f26f9ae9c599
test_changes_2 and test_bitbucket_issue_124
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
195
diff
changeset
|
4392 |
f26f9ae9c599
test_changes_2 and test_bitbucket_issue_124
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
195
diff
changeset
|
4393 c = DoGet(_REMOTE, '/changes?since=%d' % (seq + 1000)) |
f26f9ae9c599
test_changes_2 and test_bitbucket_issue_124
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
195
diff
changeset
|
4394 self.assertEqual(0, len(c['Changes'])) |
f26f9ae9c599
test_changes_2 and test_bitbucket_issue_124
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
195
diff
changeset
|
4395 self.assertTrue(c['Done']) |
f26f9ae9c599
test_changes_2 and test_bitbucket_issue_124
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
195
diff
changeset
|
4396 self.assertEqual(seq + 4, c['Last']) |
f26f9ae9c599
test_changes_2 and test_bitbucket_issue_124
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
195
diff
changeset
|
4397 |
f26f9ae9c599
test_changes_2 and test_bitbucket_issue_124
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
195
diff
changeset
|
4398 |
f26f9ae9c599
test_changes_2 and test_bitbucket_issue_124
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
195
diff
changeset
|
4399 def test_bitbucket_issue_124(self): |
f26f9ae9c599
test_changes_2 and test_bitbucket_issue_124
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
195
diff
changeset
|
4400 a = UploadInstance(_REMOTE, 'Issue124.dcm')['ID'] |
f26f9ae9c599
test_changes_2 and test_bitbucket_issue_124
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
195
diff
changeset
|
4401 |
f26f9ae9c599
test_changes_2 and test_bitbucket_issue_124
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
195
diff
changeset
|
4402 z = GetArchive(_REMOTE, '/patients/%s/media' % a) |
f26f9ae9c599
test_changes_2 and test_bitbucket_issue_124
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
195
diff
changeset
|
4403 self.assertEqual(2, len(z.namelist())) |
207
a515eec74078
test_invalid_findscp
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
202
diff
changeset
|
4404 |
a515eec74078
test_invalid_findscp
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
202
diff
changeset
|
4405 |
a515eec74078
test_invalid_findscp
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
202
diff
changeset
|
4406 def test_invalid_findscp(self): |
a515eec74078
test_invalid_findscp
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
202
diff
changeset
|
4407 UploadInstance(_REMOTE, 'DummyCT.dcm') |
a515eec74078
test_invalid_findscp
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
202
diff
changeset
|
4408 findscu = CallFindScu([ '-S', '-k', '8,52=IMAGE', '-k', '8,16', '-k', '2,2' ]) |
a515eec74078
test_invalid_findscp
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
202
diff
changeset
|
4409 self.assertEqual(0, len(re.findall('\(0002,0002\)', findscu))) |
208
2444c9a7c422
test_bitbucket_issue_90
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
207
diff
changeset
|
4410 |
2444c9a7c422
test_bitbucket_issue_90
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
207
diff
changeset
|
4411 |
2444c9a7c422
test_bitbucket_issue_90
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
207
diff
changeset
|
4412 def test_bitbucket_issue_90(self): |
2444c9a7c422
test_bitbucket_issue_90
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
207
diff
changeset
|
4413 def CountDicomResults(sex): |
2444c9a7c422
test_bitbucket_issue_90
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
207
diff
changeset
|
4414 a = CallFindScu([ '-S', '-k', '8,52=STUDY', '-k', sex ]) |
2444c9a7c422
test_bitbucket_issue_90
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
207
diff
changeset
|
4415 return len(re.findall('\(0010,0040\)', a)) |
2444c9a7c422
test_bitbucket_issue_90
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
207
diff
changeset
|
4416 |
2444c9a7c422
test_bitbucket_issue_90
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
207
diff
changeset
|
4417 def CountRestResults(sex): |
2444c9a7c422
test_bitbucket_issue_90
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
207
diff
changeset
|
4418 a = DoPost(_REMOTE, '/tools/find', |
2444c9a7c422
test_bitbucket_issue_90
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
207
diff
changeset
|
4419 { 'Level' : 'Study', 'Query' : { 'PatientSex' : sex } }) |
2444c9a7c422
test_bitbucket_issue_90
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
207
diff
changeset
|
4420 return len(a) |
2444c9a7c422
test_bitbucket_issue_90
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
207
diff
changeset
|
4421 |
2444c9a7c422
test_bitbucket_issue_90
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
207
diff
changeset
|
4422 # Just like the "CR000000.dcm" of the issue, the test image |
2444c9a7c422
test_bitbucket_issue_90
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
207
diff
changeset
|
4423 # "DummyCT.dcm" has the tag PatientSex (0010,0040) unset |
2444c9a7c422
test_bitbucket_issue_90
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
207
diff
changeset
|
4424 UploadInstance(_REMOTE, 'DummyCT.dcm') |
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test_bitbucket_issue_90
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4425 |
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4426 # Test that the behavior of DICOM vs. REST API is consistent on missing tags |
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4427 |
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4428 # In wildcard constraints, the patient sex must be set for a match to occur |
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4429 self.assertEqual(0, CountDicomResults('PatientSex=*')) |
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4430 self.assertEqual(0, CountRestResults('*')) |
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4431 |
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4432 # In single-valued constraints, the patient sex must be set |
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4433 self.assertEqual(0, CountDicomResults('PatientSex=F')) |
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4434 self.assertEqual(0, CountDicomResults('PatientSex=M')) |
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4435 self.assertEqual(0, CountRestResults('F')) |
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4436 self.assertEqual(0, CountRestResults('M')) |
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4437 |
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4438 # Empty constraints are only used to ask the actual value of |
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4439 # the tag to be added to the *answer*. The tag should not used |
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4440 # as a filter in such a situation. |
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4441 self.assertEqual(1, CountDicomResults('PatientSex')) |
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4442 self.assertEqual(1, CountDicomResults('PatientSex=')) |
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4443 self.assertEqual(1, CountRestResults('')) # This check fails on Orthanc <= 1.5.2 (issue 90) |
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4444 |
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4445 |
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4446 def test_rest_modalities_in_study(self): |
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4447 # Tests a regression that is present in Orthanc 1.5.2 and 1.5.3 |
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4448 # https://groups.google.com/d/msg/orthanc-users/7lZyG3wpx-M/uOXzAzVCFwAJ |
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4449 UploadInstance(_REMOTE, 'ColorTestImageJ.dcm') |
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4450 |
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4451 a = DoPost(_REMOTE, '/tools/find', { 'Level' : 'Study', |
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4452 'Query' : { 'ModalitiesInStudy' : 'US' }}) |
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4453 self.assertEqual(0, len(a)) |
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4454 |
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4455 a = DoPost(_REMOTE, '/tools/find', { 'Level' : 'Study', |
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4456 'Query' : { 'ModalitiesInStudy' : 'US\\CT' }}) |
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4457 self.assertEqual(1, len(a)) |
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4458 |
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4459 a = DoPost(_REMOTE, '/tools/find', { 'Level' : 'Study', |
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4460 'Query' : { 'ModalitiesInStudy' : 'CT' }}) |
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4461 self.assertEqual(1, len(a)) |
211 | 4462 |
4463 | |
4464 def test_series_status(self): | |
4465 def HasCompletedInChanges(): | |
4466 for c in DoGet(_REMOTE, '/changes?limit=1000&since=0')['Changes']: | |
4467 if c['ChangeType'] == 'CompletedSeries': | |
4468 return True; | |
4469 | |
4470 return False | |
4471 | |
4472 UploadInstance(_REMOTE, 'Knix/Loc/IM-0001-0001.dcm') | |
4473 series = '8ea120d7-5057d919-837dfbcc-ccd04e0f-7f3a94aa' | |
4474 self.assertEqual('Unknown', DoGet(_REMOTE, '/series/%s' % series)['Status']) | |
4475 self.assertFalse(HasCompletedInChanges()) | |
4476 | |
4477 series = 'ce25ecb6-ed79d004-5ae43ca7-3fc89bc5-67511614' | |
4478 | |
4479 for i in range(3): | |
4480 UploadInstance(_REMOTE, 'Series/Lena-%d.dcm' % (i + 1)) | |
4481 self.assertEqual('Missing', DoGet(_REMOTE, '/series/%s' % series)['Status']) | |
4482 self.assertFalse(HasCompletedInChanges()) | |
4483 | |
4484 UploadInstance(_REMOTE, 'Series/Lena-4.dcm') | |
4485 self.assertEqual('Complete', DoGet(_REMOTE, '/series/%s' % series)['Status']) | |
4486 self.assertTrue(HasCompletedInChanges()) | |
4487 | |
4488 DoDelete(_REMOTE, '/changes') | |
4489 self.assertFalse(HasCompletedInChanges()) | |
4490 | |
4491 UploadInstance(_REMOTE, 'Series/Lena-5.dcm') | |
4492 self.assertEqual('Inconsistent', DoGet(_REMOTE, '/series/%s' % series)['Status']) | |
4493 self.assertFalse(HasCompletedInChanges()) | |
4494 | |
215 | 4495 |
4496 def test_dicomweb(self): | |
4497 def Compare(dicom, reference): | |
4498 a = UploadInstance(_REMOTE, dicom) ['ID'] | |
4499 b = DoGet(_REMOTE, '/instances/%s/file' % a, | |
4500 headers = { 'Accept' : 'application/dicom+json' }) | |
4501 with open(GetDatabasePath(reference), 'rb') as c: | |
4502 d = json.load(c) | |
220 | 4503 AssertAlmostEqualRecursive(self, d, b) |
215 | 4504 |
4505 Compare('DummyCT.dcm', 'DummyCT.json') | |
4506 Compare('MarekLatin2.dcm', 'MarekLatin2.json') | |
4507 Compare('HierarchicalAnonymization/StructuredReports/IM0', | |
4508 'HierarchicalAnonymization/StructuredReports/IM0.json') | |
217 | 4509 |
4510 | |
4511 def test_issue_95_encodings(self): | |
319 | 4512 # https://bugs.orthanc-server.com/show_bug.cgi?id=95 |
217 | 4513 # Check out image: "../Database/Encodings/DavidClunie/charsettests.screenshot.png" |
4514 | |
4515 # Very useful tool: "file2" from package "file-kanji" | |
4516 | |
4517 def GetPatientName(dicom): | |
4518 i = UploadInstance(_REMOTE, dicom) ['ID'] | |
4519 j = DoGet(_REMOTE, '/instances/%s/tags?simplify' % i) | |
4520 return j['PatientName'] | |
4521 | |
4522 def ComparePatientName(name, dicom): | |
4523 self.assertEqual(name, GetPatientName(dicom)) | |
4524 | |
4525 # gdcmraw -t 10,10 -i SCSFREN -o /tmp/tag && uconv -f ISO-IR-100 -t UTF-8 /tmp/tag && echo | |
4526 ComparePatientName(u'Buc^Jérôme', 'Encodings/DavidClunie/SCSFREN') | |
4527 | |
4528 # gdcmraw -t 10,10 -i SCSI2 -o /tmp/tag && uconv -f KOREAN -t UTF-8 /tmp/tag && echo | |
4529 ComparePatientName(u'Hong^Gildong=洪^吉洞=홍^길동', 'Encodings/DavidClunie/SCSI2') # Since Orthanc 1.5.5 | |
4530 | |
4531 # gdcmraw -t 10,10 -i SCSX2 -o /tmp/tag && uconv -f GB18030 -t UTF-8 /tmp/tag && echo | |
4532 ComparePatientName(u'Wang^XiaoDong=王^小东=', 'Encodings/DavidClunie/SCSX2') | |
4533 | |
4534 # gdcmraw -t 10,10 -i SCSX1 -o /tmp/tag && cat /tmp/tag && echo | |
4535 ComparePatientName(u'Wang^XiaoDong=王^小東=', 'Encodings/DavidClunie/SCSX1') | |
4536 | |
4537 # gdcmraw -t 10,10 -i SCSH31 -o /tmp/tag && uconv -f JIS -t UTF-8 /tmp/tag && echo | |
4538 ComparePatientName(u'Yamada^Tarou=山田^太郎=やまだ^たろう', 'Encodings/DavidClunie/SCSH31') | |
4539 | |
4540 # gdcmraw -t 10,10 -i SCSGERM -o /tmp/tag && uconv -f ISO-IR-100 -t UTF-8 /tmp/tag && echo | |
4541 ComparePatientName(u'Äneas^Rüdiger', 'Encodings/DavidClunie/SCSGERM') | |
4542 | |
4543 # gdcmraw -t 10,10 -i SCSGREEK -o /tmp/tag && uconv -f ISO-IR-126 -t UTF-8 /tmp/tag && echo | |
4544 ComparePatientName(u'Διονυσιος', 'Encodings/DavidClunie/SCSGREEK') | |
4545 | |
4546 # gdcmraw -t 10,10 -i SCSRUSS -o /tmp/tag && uconv -f ISO-IR-144 -t UTF-8 /tmp/tag && echo | |
4547 ComparePatientName(u'Люкceмбypг', 'Encodings/DavidClunie/SCSRUSS') | |
4548 | |
4549 # gdcmraw -t 10,10 -i SCSHBRW -o /tmp/tag && uconv -f ISO-IR-138 -t UTF-8 /tmp/tag && echo | |
4550 # NB: Hebrew is a right-to-left encoding, copying/pasting from | |
4551 # Linux console into Emacs automatically reverse the string | |
4552 ComparePatientName(u'שרון^דבורה', 'Encodings/DavidClunie/SCSHBRW') | |
4553 | |
4554 # gdcmraw -t 10,10 -i SCSARAB -o /tmp/tag && uconv -f ISO-IR-127 -t UTF-8 /tmp/tag && echo | |
4555 # NB: Right-to-left as for Hebrew (SCSHBRW), and the Ubuntu console can't display such | |
4556 # characters by default, but copy/paste works with Emacs | |
4557 ComparePatientName(u'قباني^لنزار', 'Encodings/DavidClunie/SCSARAB') | |
4558 | |
4559 # SCSH32: This SpecificCharacterSet is composed of 2 | |
4560 # codepages: "ISO 2022 IR 13" (i.e. "SHIFT_JIS") until the | |
4561 # first equal, then "ISO 2022 IR 87" (i.e. "JIS") for the | |
4562 # remainer. Orthanc only takes into consideration the first | |
4563 # codepage: This is a limitation. | |
4564 # gdcmraw -t 10,10 -i SCSH32 -o /tmp/tag && cut -d '=' -f 1 /tmp/tag | uconv -f SHIFT_JIS -t UTF-8 | |
4565 self.assertTrue(GetPatientName('Encodings/DavidClunie/SCSH32').startswith(u'ヤマダ^タロウ=')) | |
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4566 |
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4567 |
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4568 def test_findscu_missing_tags(self): |
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4569 # dcmodify -e Rows DummyCTInvalidRows.dcm -gst -gse -gin |
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4570 UploadInstance(_REMOTE, 'DummyCT.dcm') |
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4571 UploadInstance(_REMOTE, 'DummyCTInvalidRows.dcm') |
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4572 |
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4573 i = CallFindScu([ '-k', '0008,0052=IMAGES', '-k', 'Rows', '-k', 'PatientName' ]) |
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4574 |
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4575 # We have 2 instances... |
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4576 patientNames = re.findall('\(0010,0010\).*?\[(.*?)\]', i) |
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4577 self.assertEqual(2, len(patientNames)) |
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4578 self.assertEqual('KNIX', patientNames[0]) |
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4579 self.assertEqual('KNIX', patientNames[1]) |
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4580 |
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4581 # ...but only 1 value for the "Rows" tag |
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4582 rows = re.findall('\(0028,0010\) US ([0-9]+)', i) |
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4583 self.assertEqual(1, len(rows)) |
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4584 self.assertEqual('512', rows[0]) |
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4585 |
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4586 |
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4587 |
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4588 def test_bitbucket_issue_131(self): |
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4589 # "Orthanc PACS silently fails to C-MOVE due to duplicate |
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4590 # StudyInstanceUID in it's database." |
319 | 4591 # https://bugs.orthanc-server.com/show_bug.cgi?id=131 |
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4592 |
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4593 # Insert 2 instances, with the same StudyInstanceUID, but with |
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4594 # different patient IDs. Orthanc will create 2 distincts |
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4595 # patients, and the hierarchy of resources above the two |
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4596 # instances will be fully disjoint. |
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4597 UploadInstance(_REMOTE, 'PatientIdsCollision/Issue131-a.dcm') |
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4598 UploadInstance(_REMOTE, 'PatientIdsCollision/Issue131-b.dcm') |
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4599 |
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4600 self.assertEqual(2, len(DoGet(_REMOTE, '/patients'))) |
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4601 self.assertEqual(2, len(DoGet(_REMOTE, '/studies'))) |
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4602 |
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4603 a = DoPost(_REMOTE, '/modalities/self/query', { |
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4604 'Level' : 'Study', |
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4605 'Query' : {"PatientID": "A" }})['ID'] |
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|
4606 |
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4607 # 1 study is matched |
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4608 self.assertEqual(1, len(DoGet(_REMOTE, '/queries/%s/answers' % a))) |
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|
4609 |
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4610 self.assertEqual(0, len(DoGet(_LOCAL, '/instances'))) |
220 | 4611 WaitAllNewJobsDone(_REMOTE, lambda: DoPost |
4612 (_REMOTE, '/queries/%s/retrieve' % a, | |
4613 '{"TargetAet":"ORTHANCTEST","Synchronous":false}')) | |
219
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|
4614 |
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|
4615 # The two studies are matched, as we made the request at the |
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4616 # Study level, thus the shared StudyInstanceUID is used as the key |
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4617 self.assertEqual(2, len(DoGet(_LOCAL, '/instances'))) |
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|
4618 |
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|
4619 |
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|
4620 # Match the 2 studies |
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4621 a = DoPost(_REMOTE, '/modalities/self/query', { |
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4622 'Level' : 'Study', |
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4623 'Query' : {"StudyInstanceUID": "2.25.123" }})['ID'] |
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4624 self.assertEqual(2, len(DoGet(_REMOTE, '/queries/%s/answers' % a))) |
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4625 DropOrthanc(_LOCAL) |
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4626 self.assertEqual(0, len(DoGet(_LOCAL, '/instances'))) |
220 | 4627 WaitAllNewJobsDone(_REMOTE, lambda: DoPost |
4628 (_REMOTE, '/queries/%s/retrieve' % a, | |
4629 '{"TargetAet":"ORTHANCTEST","Synchronous":false}')) | |
219
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4630 self.assertEqual(2, len(DoGet(_LOCAL, '/instances'))) |
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|
4631 |
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|
4632 |
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|
4633 # Same test, at the patient level => only 1 instance is transfered |
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4634 a = DoPost(_REMOTE, '/modalities/self/query', { |
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4635 'Level' : 'Patient', |
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|
4636 'Query' : {"PatientID": "A" }})['ID'] |
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4637 self.assertEqual(1, len(DoGet(_REMOTE, '/queries/%s/answers' % a))) |
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|
4638 DropOrthanc(_LOCAL) |
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diff
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|
4639 self.assertEqual(0, len(DoGet(_LOCAL, '/instances'))) |
220 | 4640 WaitAllNewJobsDone(_REMOTE, lambda: DoPost |
4641 (_REMOTE, '/queries/%s/retrieve' % a, | |
4642 '{"TargetAet":"ORTHANCTEST","Synchronous":false}')) | |
219
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|
4643 self.assertEqual(1, len(DoGet(_LOCAL, '/instances'))) |
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|
4644 |
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diff
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|
4645 |
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|
4646 # Same test, at the series level => only 1 instance is transfered |
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|
4647 a = DoPost(_REMOTE, '/modalities/self/query', { |
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|
4648 'Level' : 'Series', |
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diff
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|
4649 'Query' : {"PatientID": "A" }})['ID'] |
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diff
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|
4650 self.assertEqual(1, len(DoGet(_REMOTE, '/queries/%s/answers' % a))) |
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diff
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|
4651 DropOrthanc(_LOCAL) |
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218
diff
changeset
|
4652 self.assertEqual(0, len(DoGet(_LOCAL, '/instances'))) |
220 | 4653 WaitAllNewJobsDone(_REMOTE, lambda: DoPost |
4654 (_REMOTE, '/queries/%s/retrieve' % a, | |
4655 '{"TargetAet":"ORTHANCTEST","Synchronous":false}')) | |
219
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diff
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|
4656 self.assertEqual(1, len(DoGet(_LOCAL, '/instances'))) |
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|
4657 |
233
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diff
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|
4658 |
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test_bitbucket_issue_136
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diff
changeset
|
4659 def test_bitbucket_issue_136(self): |
ce0b19a2c807
test_bitbucket_issue_136
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diff
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|
4660 UploadInstance(_REMOTE, 'Issue137.dcm') |
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test_bitbucket_issue_136
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231
diff
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|
4661 i = CallFindScu([ '-k', '0008,0052=STUDY', '-k', '0010,0010', '-k', '0028,0010', '-k', '0040,0275' ]) |
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test_bitbucket_issue_136
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231
diff
changeset
|
4662 patientNames = re.findall('\(0010,0010\).*?\[(.*?)\]', i) |
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231
diff
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|
4663 self.assertEqual(1, len(patientNames)) |
ce0b19a2c807
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231
diff
changeset
|
4664 self.assertEqual('John Doe', patientNames[0]) |
234
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diff
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|
4665 |
93cd4fdd4a67
test_anonymize_relationships_4
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diff
changeset
|
4666 |
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test_anonymize_relationships_4
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233
diff
changeset
|
4667 def test_anonymize_relationships_4(self): |
93cd4fdd4a67
test_anonymize_relationships_4
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233
diff
changeset
|
4668 # https://groups.google.com/d/msg/orthanc-users/UkcsqyTpszE/bXUpzU0vAAAJ |
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test_anonymize_relationships_4
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233
diff
changeset
|
4669 sr1 = UploadInstance(_REMOTE, 'HierarchicalAnonymization/2019-03-28/CR000000.dcm')['ID'] |
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test_anonymize_relationships_4
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233
diff
changeset
|
4670 mr1 = UploadInstance(_REMOTE, 'HierarchicalAnonymization/2019-03-28/PR000000.dcm')['ID'] |
93cd4fdd4a67
test_anonymize_relationships_4
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233
diff
changeset
|
4671 study = '0c923249-d52121a9-2b7167f7-6b85534f-0943697e' |
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test_anonymize_relationships_4
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diff
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|
4672 |
93cd4fdd4a67
test_anonymize_relationships_4
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233
diff
changeset
|
4673 anonymized = DoPost(_REMOTE, '/studies/%s/anonymize' % study, '{}', |
93cd4fdd4a67
test_anonymize_relationships_4
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233
diff
changeset
|
4674 'application/json')['ID'] |
93cd4fdd4a67
test_anonymize_relationships_4
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233
diff
changeset
|
4675 series = DoGet(_REMOTE, '/studies/%s/series' % anonymized) |
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test_anonymize_relationships_4
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diff
changeset
|
4676 self.assertEqual(2, len(series)) |
93cd4fdd4a67
test_anonymize_relationships_4
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233
diff
changeset
|
4677 |
93cd4fdd4a67
test_anonymize_relationships_4
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233
diff
changeset
|
4678 cr = list(filter(lambda x: x['MainDicomTags']['Modality'] == 'CR', series)) |
93cd4fdd4a67
test_anonymize_relationships_4
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parents:
233
diff
changeset
|
4679 pr = list(filter(lambda x: x['MainDicomTags']['Modality'] == 'PR', series)) |
93cd4fdd4a67
test_anonymize_relationships_4
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233
diff
changeset
|
4680 self.assertEqual(1, len(cr)) |
93cd4fdd4a67
test_anonymize_relationships_4
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233
diff
changeset
|
4681 self.assertEqual(1, len(pr)) |
93cd4fdd4a67
test_anonymize_relationships_4
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233
diff
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|
4682 self.assertEqual(1, len(cr[0]['Instances'])) |
93cd4fdd4a67
test_anonymize_relationships_4
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233
diff
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|
4683 self.assertEqual(1, len(pr[0]['Instances'])) |
93cd4fdd4a67
test_anonymize_relationships_4
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233
diff
changeset
|
4684 |
93cd4fdd4a67
test_anonymize_relationships_4
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233
diff
changeset
|
4685 crinstance = DoGet(_REMOTE, '/instances/%s' % cr[0]['Instances'][0]) |
93cd4fdd4a67
test_anonymize_relationships_4
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diff
changeset
|
4686 tags = DoGet(_REMOTE, '/instances/%s/tags?short' % pr[0]['Instances'][0]) |
93cd4fdd4a67
test_anonymize_relationships_4
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233
diff
changeset
|
4687 |
93cd4fdd4a67
test_anonymize_relationships_4
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233
diff
changeset
|
4688 self.assertEqual(tags['0008,1115'][0]['0008,1140'][0]['0008,1155'], |
93cd4fdd4a67
test_anonymize_relationships_4
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233
diff
changeset
|
4689 crinstance['MainDicomTags']['SOPInstanceUID']) |
93cd4fdd4a67
test_anonymize_relationships_4
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233
diff
changeset
|
4690 self.assertEqual(tags['0008,1115'][0]['0008,1140'][0]['0008,1150'], |
93cd4fdd4a67
test_anonymize_relationships_4
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diff
changeset
|
4691 '1.2.840.10008.5.1.4.1.1.1') # SOP class for CR Image Storage |
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diff
changeset
|
4692 |
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test_anonymize_relationships_4
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233
diff
changeset
|
4693 # This fails on Orthanc <= 1.5.6 |
93cd4fdd4a67
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diff
changeset
|
4694 self.assertEqual(tags['0008,1115'][0]['0020,000e'], |
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233
diff
changeset
|
4695 cr[0]['MainDicomTags']['SeriesInstanceUID']) |
235
9929e4af2b7a
test_bitbucket_issue_140
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parents:
234
diff
changeset
|
4696 |
9929e4af2b7a
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234
diff
changeset
|
4697 |
255
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diff
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|
4698 def test_anonymize_relationships_5(self): |
02c3d91b155c
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254
diff
changeset
|
4699 ct1 = UploadInstance(_REMOTE, 'HierarchicalAnonymization/RTH/CT01.dcm') |
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diff
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|
4700 rt1 = UploadInstance(_REMOTE, 'HierarchicalAnonymization/RTH/RT.dcm') |
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diff
changeset
|
4701 oStudyId = ct1['ParentStudy'] |
02c3d91b155c
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254
diff
changeset
|
4702 oCtInstanceId = ct1['ID'] |
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254
diff
changeset
|
4703 oRtInstanceId = rt1['ID'] |
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parents:
254
diff
changeset
|
4704 |
02c3d91b155c
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254
diff
changeset
|
4705 oCtTags = DoGet(_REMOTE, '/instances/%s/tags?simplify' % oCtInstanceId) |
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254
diff
changeset
|
4706 oRtTags = DoGet(_REMOTE, '/instances/%s/tags?simplify' % oRtInstanceId) |
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diff
changeset
|
4707 |
02c3d91b155c
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254
diff
changeset
|
4708 # first validate the relationships in the source data |
02c3d91b155c
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254
diff
changeset
|
4709 oStudyUID = oCtTags['StudyInstanceUID'] |
02c3d91b155c
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254
diff
changeset
|
4710 oRtSeriesUID = oRtTags['SeriesInstanceUID'] |
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diff
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|
4711 oRtInstanceUID = oRtTags['SOPInstanceUID'] |
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diff
changeset
|
4712 oRtFrameOfReferenceUID = oRtTags['ReferencedFrameOfReferenceSequence'][0]['FrameOfReferenceUID'] |
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254
diff
changeset
|
4713 oCtSeriesUID = oCtTags['SeriesInstanceUID'] |
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254
diff
changeset
|
4714 oCtInstanceUID = oCtTags['SOPInstanceUID'] |
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diff
changeset
|
4715 oCtFrameOfReferenceUID = oCtTags['FrameOfReferenceUID'] |
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diff
changeset
|
4716 |
02c3d91b155c
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254
diff
changeset
|
4717 oContourSequenceCount = len(oRtTags['ROIContourSequence'][0]['ContourSequence']) |
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diff
changeset
|
4718 self.assertEqual(oCtFrameOfReferenceUID, oRtFrameOfReferenceUID) |
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diff
changeset
|
4719 self.assertEqual(oStudyUID, oRtTags['ReferencedFrameOfReferenceSequence'][0]['RTReferencedStudySequence'][0]['ReferencedSOPInstanceUID']) |
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diff
changeset
|
4720 self.assertEqual(oCtSeriesUID, oRtTags['ReferencedFrameOfReferenceSequence'][0]['RTReferencedStudySequence'][0]['RTReferencedSeriesSequence'][0]['SeriesInstanceUID']) |
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diff
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|
4721 self.assertEqual(oCtInstanceUID, oRtTags['ReferencedFrameOfReferenceSequence'][0]['RTReferencedStudySequence'][0]['RTReferencedSeriesSequence'][0]['ContourImageSequence'][0]['ReferencedSOPInstanceUID']) |
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4722 self.assertEqual(oCtInstanceUID, oRtTags['ROIContourSequence'][0]['ContourSequence'][oContourSequenceCount-1]['ContourImageSequence'][0]['ReferencedSOPInstanceUID']) |
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4723 |
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4724 ### anonymize |
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4725 |
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4726 aStudyId = DoPost(_REMOTE, '/studies/%s/anonymize' % oStudyId, '{}', |
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4727 'application/json')['ID'] |
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4728 |
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4729 ### validate |
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4730 |
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4731 aSeries = DoGet(_REMOTE, '/studies/%s/series' % aStudyId) |
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4732 self.assertEqual(2, len(aSeries)) |
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4733 |
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4734 aCt = list(filter(lambda x: x['MainDicomTags']['Modality'] == 'CT', aSeries)) |
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4735 aRt = list(filter(lambda x: x['MainDicomTags']['Modality'] == 'RTSTRUCT', aSeries)) |
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4736 aCtInstanceId = aCt[0]['Instances'][0] |
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4737 aRtInstanceId = aRt[0]['Instances'][0] |
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4738 aCtTags = DoGet(_REMOTE, '/instances/%s/tags?simplify' % aCtInstanceId) |
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4739 aRtTags = DoGet(_REMOTE, '/instances/%s/tags?simplify' % aRtInstanceId) |
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4740 |
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4741 # now validate the relationships in the anonymized data |
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4742 aStudyUID = aCtTags['StudyInstanceUID'] |
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4743 aRtSeriesUID = aRtTags['SeriesInstanceUID'] |
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4744 aRtInstanceUID = aRtTags['SOPInstanceUID'] |
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4745 aRtFrameOfReferenceUID = aRtTags['ReferencedFrameOfReferenceSequence'][0]['FrameOfReferenceUID'] |
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4746 aCtSeriesUID = aCtTags['SeriesInstanceUID'] |
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4747 aCtInstanceUID = aCtTags['SOPInstanceUID'] |
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4748 aCtFrameOfReferenceUID = aCtTags['FrameOfReferenceUID'] |
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4749 |
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4750 aContourSequenceCount = len(aRtTags['ROIContourSequence'][0]['ContourSequence']) |
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4751 # make sure all UIDs have been updated |
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4752 self.assertNotEqual(oStudyUID, aStudyUID) |
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4753 self.assertNotEqual(oRtSeriesUID, aRtSeriesUID) |
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4754 self.assertNotEqual(oRtInstanceUID, aRtInstanceUID) |
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4755 self.assertNotEqual(oRtFrameOfReferenceUID, aRtFrameOfReferenceUID) |
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4756 self.assertNotEqual(oCtSeriesUID, aCtSeriesUID) |
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4757 self.assertNotEqual(oCtInstanceUID, aCtInstanceUID) |
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4758 self.assertNotEqual(oCtFrameOfReferenceUID, aCtFrameOfReferenceUID) |
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4759 |
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4760 # validate the relationships |
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4761 self.assertEqual(oContourSequenceCount, aContourSequenceCount) |
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4762 self.assertEqual(aCtFrameOfReferenceUID, aRtFrameOfReferenceUID) |
256 | 4763 self.assertEqual(aStudyUID, aRtTags['ReferencedFrameOfReferenceSequence'][0]['RTReferencedStudySequence'][0]['ReferencedSOPInstanceUID']) |
4764 self.assertEqual(aCtSeriesUID, aRtTags['ReferencedFrameOfReferenceSequence'][0]['RTReferencedStudySequence'][0]['RTReferencedSeriesSequence'][0]['SeriesInstanceUID']) | |
255
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4765 self.assertEqual(aCtInstanceUID, aRtTags['ReferencedFrameOfReferenceSequence'][0]['RTReferencedStudySequence'][0]['RTReferencedSeriesSequence'][0]['ContourImageSequence'][0]['ReferencedSOPInstanceUID']) |
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4766 self.assertEqual(aCtInstanceUID, aRtTags['ROIContourSequence'][0]['ContourSequence'][aContourSequenceCount-1]['ContourImageSequence'][0]['ReferencedSOPInstanceUID']) |
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4767 |
256 | 4768 def test_anonymize_relationships_5b(self): |
4769 # same test as previous one but, this time, we force the StudyInstanceUID | |
4770 ct1 = UploadInstance(_REMOTE, 'HierarchicalAnonymization/RTH/CT01.dcm') | |
4771 rt1 = UploadInstance(_REMOTE, 'HierarchicalAnonymization/RTH/RT.dcm') | |
4772 oStudyId = ct1['ParentStudy'] | |
4773 oCtInstanceId = ct1['ID'] | |
4774 oRtInstanceId = rt1['ID'] | |
4775 | |
4776 oCtTags = DoGet(_REMOTE, '/instances/%s/tags?simplify' % oCtInstanceId) | |
4777 oRtTags = DoGet(_REMOTE, '/instances/%s/tags?simplify' % oRtInstanceId) | |
4778 | |
4779 ### anonymize while forcing the StudyInstanceUID | |
4780 | |
4781 aStudyId = DoPost(_REMOTE, '/studies/%s/anonymize' % oStudyId, '{ "Replace" : { "StudyInstanceUID" : "1.2.3.4"}, "Force": true}', | |
4782 'application/json')['ID'] | |
4783 | |
4784 ### validate | |
4785 | |
4786 aSeries = DoGet(_REMOTE, '/studies/%s/series' % aStudyId) | |
4787 self.assertEqual(2, len(aSeries)) | |
4788 | |
4789 aCt = list(filter(lambda x: x['MainDicomTags']['Modality'] == 'CT', aSeries)) | |
4790 aRt = list(filter(lambda x: x['MainDicomTags']['Modality'] == 'RTSTRUCT', aSeries)) | |
4791 aCtInstanceId = aCt[0]['Instances'][0] | |
4792 aRtInstanceId = aRt[0]['Instances'][0] | |
4793 aCtTags = DoGet(_REMOTE, '/instances/%s/tags?simplify' % aCtInstanceId) | |
4794 aRtTags = DoGet(_REMOTE, '/instances/%s/tags?simplify' % aRtInstanceId) | |
4795 | |
4796 self.assertEqual("1.2.3.4", aCtTags['StudyInstanceUID']) | |
4797 self.assertEqual("1.2.3.4", aRtTags['StudyInstanceUID']) | |
4798 self.assertEqual("1.2.3.4", aRtTags['ReferencedFrameOfReferenceSequence'][0]['RTReferencedStudySequence'][0]['ReferencedSOPInstanceUID']) | |
255
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4799 |
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4800 |
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4801 def test_bitbucket_issue_140(self): |
266 | 4802 # "Modifying private tags with REST API changes VR from LO to |
267 | 4803 # UN." This test fails if DCMTK <= 3.6.1 (e.g. fails on Ubuntu 16.04). |
319 | 4804 # https://bugs.orthanc-server.com/show_bug.cgi?id=140 |
235
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4805 source = UploadInstance(_REMOTE, 'Issue140.dcm') ['ID'] |
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4806 series = DoGet(_REMOTE, '/instances/%s' % source) ['ParentSeries'] |
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4807 |
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4808 target = DoPost(_REMOTE, '/series/%s/modify' % series, { |
266 | 4809 'Replace' : { 'RadioButton3' : 'aaabbbccc' }, |
4810 'PrivateCreator' : 'RadioLogic', # <= the trick is here | |
235
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4811 }, 'application/json') ['ID'] |
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4812 |
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4813 instances = DoGet(_REMOTE, '/series/%s/instances' % target) |
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4814 self.assertEqual(1, len(instances)) |
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4815 |
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4816 tags = DoGet(_REMOTE, '/instances/%s/tags' % source) |
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4817 t = tags['4321,1012'] |
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4818 self.assertEqual('String', t['Type']) |
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4819 self.assertEqual('RadioButton3', t['Name']) |
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4820 self.assertEqual('RadioLogic', t['PrivateCreator']) |
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4821 self.assertEqual('jklmopq', t['Value']) |
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4822 |
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4823 tags = DoGet(_REMOTE, '/instances/%s/tags' % instances[0]['ID']) |
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4824 t = tags['4321,1012'] |
327 | 4825 self.assertEqual('String', t['Type']) # This fails if DCMTK <= 3.6.1 |
235
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4826 self.assertEqual('RadioButton3', t['Name']) |
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4827 self.assertEqual('RadioLogic', t['PrivateCreator']) |
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4828 self.assertEqual('aaabbbccc', t['Value']) |
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4829 |
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4830 |
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4831 def test_find_normalize(self): |
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4832 # https://groups.google.com/d/msg/orthanc-users/AIwooGjsh94/YL28MNY4AgAJ |
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4833 |
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4834 UploadInstance(_REMOTE, 'Knee/T1/IM-0001-0001.dcm') |
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4835 |
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4836 a = DoPost(_REMOTE, '/modalities/self/query', { |
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4837 'Level' : 'Instance', |
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4838 'Query' : { 'Rows' : '42' } |
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4839 }) ['ID'] |
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4840 |
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4841 b = DoGet(_REMOTE, '/queries/%s/answers?expand&simplify' % a) |
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4842 self.assertEqual(1, len(b)) |
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4843 self.assertFalse('Rows' in b[0]) |
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4844 |
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4845 a = DoPost(_REMOTE, '/modalities/self/query', { |
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4846 'Level' : 'Instance', |
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4847 'Query' : { 'Rows' : '42' }, |
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4848 'Normalize' : False |
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4849 }) ['ID'] |
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4850 |
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4851 b = DoGet(_REMOTE, '/queries/%s/answers' % a) |
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4852 self.assertEqual(0, len(b)) |
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4853 |
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4854 a = DoPost(_REMOTE, '/modalities/self/query', { |
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4855 'Level' : 'Instance', |
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4856 'Query' : { 'Rows' : '512' }, |
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4857 'Normalize' : False |
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4858 }) ['ID'] |
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4859 |
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4860 b = DoGet(_REMOTE, '/queries/%s/answers?expand&simplify' % a) |
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4861 self.assertEqual(1, len(b)) |
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4862 self.assertTrue('Rows' in b[0]) |
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|
4863 self.assertEqual('512', b[0]['Rows']) |
237 | 4864 |
4865 a = DoPost(_REMOTE, '/modalities/self/query', { | |
4866 'Level' : 'Instance', | |
4867 'Query' : { 'Rows' : '' }, | |
4868 'Normalize' : False | |
4869 }) ['ID'] | |
4870 | |
4871 b = DoGet(_REMOTE, '/queries/%s/answers?expand&simplify' % a) | |
4872 self.assertEqual(1, len(b)) | |
4873 self.assertTrue('Rows' in b[0]) | |
4874 self.assertEqual('512', b[0]['Rows']) | |
4875 | |
4876 self.assertRaises(Exception, lambda: DoPost( | |
4877 _REMOTE, '/modalities/self/query', { | |
4878 'Level' : 'Instance', | |
4879 'Query' : { 'Rows' : '*' }, # Out-of-range value | |
4880 'Normalize' : False | |
4881 })) | |
243
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|
4882 |
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|
4883 |
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|
4884 def test_bitbucket_issue_141(self): |
319 | 4885 # https://bugs.orthanc-server.com/show_bug.cgi?id=141 |
243
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diff
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|
4886 a = UploadInstance(_REMOTE, 'Issue141.dcm') ['ID'] |
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diff
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|
4887 study = '494c8037-b237f263-d8f15075-c8cb2280-daf39bd1' |
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diff
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|
4888 |
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diff
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|
4889 with open(GetDatabasePath('HelloWorld.pdf'), 'rb') as f: |
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diff
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|
4890 pdf = f.read() |
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diff
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|
4891 |
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test_bitbucket_issue_141
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diff
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|
4892 b = DoPost(_REMOTE, '/tools/create-dicom', { |
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|
4893 'Parent' : study, |
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4894 'Tags' : {}, |
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4895 'Content' : 'data:application/pdf;base64,' + base64.b64encode(pdf) |
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4896 }) ['ID'] |
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|
4897 |
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diff
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|
4898 tagsA = DoGet(_REMOTE, '/instances/%s/tags?short' % a) |
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4899 tagsB = DoGet(_REMOTE, '/instances/%s/tags?short' % b) |
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4900 self.assertEqual(tagsA['0008,0005'], tagsB['0008,0005']) |
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|
4901 self.assertEqual(tagsA['0008,1030'], tagsB['0008,1030']) |
247
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4902 |
1abdab0ba0e6
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|
4903 |
1abdab0ba0e6
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|
4904 def test_modifying_missing_patientid(self): |
1abdab0ba0e6
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|
4905 # https://groups.google.com/d/msg/orthanc-users/aphG_h1AHVg/rfOTtTPTAgAJ |
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|
4906 UploadInstance(_REMOTE, '2019-06-17-VedranZdesic.dcm') |
1abdab0ba0e6
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|
4907 DoPost(_REMOTE, '/studies/0c4aca1d-c107a241-6659d6aa-594c674a-a468b94a/modify', {}) |
262 | 4908 |
4909 | |
4910 def test_log_level(self): | |
319 | 4911 # https://bugs.orthanc-server.com/show_bug.cgi?id=65 |
262 | 4912 original = DoGet(_REMOTE, '/tools/log-level') |
4913 | |
4914 DoPut(_REMOTE, '/tools/log-level', 'default') | |
4915 self.assertEqual('default', DoGet(_REMOTE, '/tools/log-level')) | |
4916 DoGet(_REMOTE, '/system') | |
4917 | |
4918 DoPut(_REMOTE, '/tools/log-level', 'verbose') | |
4919 self.assertEqual('verbose', DoGet(_REMOTE, '/tools/log-level')) | |
4920 DoGet(_REMOTE, '/system') | |
4921 | |
4922 DoPut(_REMOTE, '/tools/log-level', 'trace') | |
4923 self.assertEqual('trace', DoGet(_REMOTE, '/tools/log-level')) | |
4924 DoGet(_REMOTE, '/system') | |
4925 | |
4926 self.assertRaises(Exception, lambda: DoPut(_REMOTE, '/tools/log-level', 'nope')) | |
4927 | |
4928 # Switch back to the original log level | |
4929 DoPut(_REMOTE, '/tools/log-level', original) | |
264
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|
4930 |
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|
4931 |
445f498bc1d4
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|
4932 def test_upload_compressed(self): |
265 | 4933 # New in Orthanc 1.6.0 |
264
445f498bc1d4
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|
4934 with open(GetDatabasePath('DummyCT.dcm.gz'), 'rb') as f: |
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|
4935 d = f.read() |
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|
4936 |
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|
4937 self.assertRaises(Exception, lambda: DoPost(_REMOTE, '/instances', d, 'application/dicom')) |
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|
4938 |
445f498bc1d4
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|
4939 self.assertRaises(Exception, lambda: DoPost(_REMOTE, '/instances', d, 'application/dicom', |
445f498bc1d4
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|
4940 headers = { 'Content-Encoding' : 'nope' })) |
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diff
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|
4941 |
445f498bc1d4
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|
4942 a = DoPost(_REMOTE, '/instances', d, 'application/dicom', |
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|
4943 headers = { 'Content-Encoding' : 'gzip' }) |
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|
4944 self.assertEqual('66a662ce-7430e543-bad44d47-0dc5a943-ec7a538d', a['ID']) |
262 | 4945 |
4946 | |
263
a2719263fd04
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262
diff
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|
4947 def test_study_series_find_inconsistency(self): |
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diff
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|
4948 # https://groups.google.com/forum/#!topic/orthanc-users/bLv6Z11COy0 |
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|
4949 |
a2719263fd04
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diff
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|
4950 def CountAnswers(query): |
a2719263fd04
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diff
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|
4951 a = DoPost(_REMOTE, 'modalities/self/query', query) |
a2719263fd04
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diff
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|
4952 return len(DoGet(_REMOTE, '%s/answers' % a['Path'])) |
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|
4953 |
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diff
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|
4954 # This instance has "SeriesDescription" (0008,103e) tag, but no |
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262
diff
changeset
|
4955 # "ProtocolName" (0018,1030). Both of those tags are part of |
a2719263fd04
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262
diff
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|
4956 # the "main DICOM tags" of Orthanc. |
a2719263fd04
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262
diff
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|
4957 UploadInstance(_REMOTE, 'Issue137.dcm') |
a2719263fd04
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diff
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|
4958 |
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|
4959 |
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diff
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|
4960 self.assertEqual(1, CountAnswers({ |
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diff
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|
4961 'Level' : 'Study', |
a2719263fd04
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diff
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|
4962 })) |
a2719263fd04
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diff
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|
4963 |
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diff
changeset
|
4964 self.assertEqual(1, CountAnswers({ |
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|
4965 'Level' : 'Series', |
a2719263fd04
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diff
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|
4966 })) |
a2719263fd04
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diff
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|
4967 |
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|
4968 |
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diff
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|
4969 ## |
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diff
changeset
|
4970 ## "SeriesDescription" is present, and has VR "CS" => wildcard is allowed |
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diff
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|
4971 ## http://dicom.nema.org/medical/dicom/2019e/output/chtml/part04/sect_C.2.2.2.4.html |
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|
4972 ## |
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|
4973 |
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diff
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|
4974 # At the study level, the "SeriesDescription" tag is not allowed, but |
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|
4975 # is wiped out by the normalization |
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|
4976 self.assertEqual(0, CountAnswers({ |
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|
4977 'Level' : 'Study', |
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|
4978 'Query' : { |
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|
4979 'SeriesDescription' : 'NOPE' |
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|
4980 }, |
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|
4981 'Normalize' : False |
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|
4982 })) |
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diff
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|
4983 self.assertEqual(0, CountAnswers({ |
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changeset
|
4984 # This test fails on Orthanc <= 1.5.8 |
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|
4985 'Level' : 'Study', |
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|
4986 'Query' : { |
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changeset
|
4987 'SeriesDescription' : '*' # Wildcard matching => no match, as the tag is absent |
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|
4988 }, |
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|
4989 'Normalize' : False |
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|
4990 })) |
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|
4991 self.assertEqual(1, CountAnswers({ |
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|
4992 'Level' : 'Study', |
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4993 'Query' : { |
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4994 'SeriesDescription' : 'THIS^VALUE^IS^WIPED^OUT' |
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|
4995 }, |
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|
4996 'Normalize' : True |
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|
4997 })) |
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|
4998 self.assertEqual(1, CountAnswers({ |
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|
4999 'Level' : 'Study', |
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|
5000 'Query' : { |
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|
5001 'SeriesDescription' : '*' # Matches, as wiped out by the normalization |
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|
5002 }, |
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5003 'Normalize' : True |
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5004 })) |
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|
5005 |
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|
5006 for normalize in [ True, False ]: |
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changeset
|
5007 # At the series level, the "SeriesDescription" tag is allowed, and |
a2719263fd04
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Sebastien Jodogne <s.jodogne@gmail.com>
parents:
262
diff
changeset
|
5008 # normalization has no effect |
a2719263fd04
test_study_series_find_inconsistency
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
262
diff
changeset
|
5009 |
a2719263fd04
test_study_series_find_inconsistency
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
262
diff
changeset
|
5010 # "Universal matching" will match all entities, including |
a2719263fd04
test_study_series_find_inconsistency
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
262
diff
changeset
|
5011 # those with the missing tag |
a2719263fd04
test_study_series_find_inconsistency
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
262
diff
changeset
|
5012 # http://dicom.nema.org/medical/dicom/2019e/output/chtml/part04/sect_C.2.2.2.3.html |
a2719263fd04
test_study_series_find_inconsistency
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
262
diff
changeset
|
5013 self.assertEqual(1, CountAnswers({ |
a2719263fd04
test_study_series_find_inconsistency
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
262
diff
changeset
|
5014 'Level' : 'Series', |
a2719263fd04
test_study_series_find_inconsistency
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
262
diff
changeset
|
5015 'Query' : { |
a2719263fd04
test_study_series_find_inconsistency
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
262
diff
changeset
|
5016 'SeriesDescription' : '' # Universal matching |
a2719263fd04
test_study_series_find_inconsistency
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
262
diff
changeset
|
5017 }, |
a2719263fd04
test_study_series_find_inconsistency
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
262
diff
changeset
|
5018 'Normalize' : normalize, |
a2719263fd04
test_study_series_find_inconsistency
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
262
diff
changeset
|
5019 })) |
a2719263fd04
test_study_series_find_inconsistency
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
262
diff
changeset
|
5020 # "Universal matching" will match all entities, including |
a2719263fd04
test_study_series_find_inconsistency
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
262
diff
changeset
|
5021 # those with the missing tag |
a2719263fd04
test_study_series_find_inconsistency
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
262
diff
changeset
|
5022 # http://dicom.nema.org/medical/dicom/2019e/output/chtml/part04/sect_C.2.2.2.3.html |
a2719263fd04
test_study_series_find_inconsistency
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
262
diff
changeset
|
5023 self.assertEqual(1, CountAnswers({ |
a2719263fd04
test_study_series_find_inconsistency
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
262
diff
changeset
|
5024 'Level' : 'Series', |
a2719263fd04
test_study_series_find_inconsistency
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
262
diff
changeset
|
5025 'Query' : { |
a2719263fd04
test_study_series_find_inconsistency
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
262
diff
changeset
|
5026 'SeriesDescription' : '*' # Wildcard matching |
a2719263fd04
test_study_series_find_inconsistency
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
262
diff
changeset
|
5027 }, |
a2719263fd04
test_study_series_find_inconsistency
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
262
diff
changeset
|
5028 'Normalize' : normalize, |
a2719263fd04
test_study_series_find_inconsistency
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
262
diff
changeset
|
5029 })) |
a2719263fd04
test_study_series_find_inconsistency
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
262
diff
changeset
|
5030 self.assertEqual(1, CountAnswers({ |
a2719263fd04
test_study_series_find_inconsistency
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
262
diff
changeset
|
5031 'Level' : 'Series', |
a2719263fd04
test_study_series_find_inconsistency
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
262
diff
changeset
|
5032 'Query' : { |
a2719263fd04
test_study_series_find_inconsistency
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
262
diff
changeset
|
5033 'SeriesDescription' : '*model*' # The actual value is "STL model: intraop Report" |
a2719263fd04
test_study_series_find_inconsistency
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
262
diff
changeset
|
5034 }, |
a2719263fd04
test_study_series_find_inconsistency
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
262
diff
changeset
|
5035 'Normalize' : normalize, |
a2719263fd04
test_study_series_find_inconsistency
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
262
diff
changeset
|
5036 })) |
a2719263fd04
test_study_series_find_inconsistency
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
262
diff
changeset
|
5037 self.assertEqual(0, CountAnswers({ |
a2719263fd04
test_study_series_find_inconsistency
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
262
diff
changeset
|
5038 'Level' : 'Series', |
a2719263fd04
test_study_series_find_inconsistency
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
262
diff
changeset
|
5039 'Query' : { |
a2719263fd04
test_study_series_find_inconsistency
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
262
diff
changeset
|
5040 'SeriesDescription' : '*MISMATCHED^VALUE*' |
a2719263fd04
test_study_series_find_inconsistency
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
262
diff
changeset
|
5041 }, |
a2719263fd04
test_study_series_find_inconsistency
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
262
diff
changeset
|
5042 'Normalize' : normalize, |
a2719263fd04
test_study_series_find_inconsistency
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
262
diff
changeset
|
5043 })) |
a2719263fd04
test_study_series_find_inconsistency
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
262
diff
changeset
|
5044 |
a2719263fd04
test_study_series_find_inconsistency
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
262
diff
changeset
|
5045 # Universal matching matches any instance, even if the |
a2719263fd04
test_study_series_find_inconsistency
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
262
diff
changeset
|
5046 # query is at the study-level, and thus if "SeriesDescription" |
a2719263fd04
test_study_series_find_inconsistency
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
262
diff
changeset
|
5047 # makes no sense |
a2719263fd04
test_study_series_find_inconsistency
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
262
diff
changeset
|
5048 self.assertEqual(1, CountAnswers({ |
a2719263fd04
test_study_series_find_inconsistency
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
262
diff
changeset
|
5049 'Level' : 'Study', |
a2719263fd04
test_study_series_find_inconsistency
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
262
diff
changeset
|
5050 'Query' : { |
a2719263fd04
test_study_series_find_inconsistency
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
262
diff
changeset
|
5051 'SeriesDescription' : '' # Universal matching |
a2719263fd04
test_study_series_find_inconsistency
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
262
diff
changeset
|
5052 }, |
a2719263fd04
test_study_series_find_inconsistency
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
262
diff
changeset
|
5053 'Normalize' : normalize, |
a2719263fd04
test_study_series_find_inconsistency
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
262
diff
changeset
|
5054 })) |
a2719263fd04
test_study_series_find_inconsistency
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
262
diff
changeset
|
5055 |
a2719263fd04
test_study_series_find_inconsistency
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
262
diff
changeset
|
5056 |
a2719263fd04
test_study_series_find_inconsistency
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
262
diff
changeset
|
5057 |
a2719263fd04
test_study_series_find_inconsistency
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
262
diff
changeset
|
5058 ## |
a2719263fd04
test_study_series_find_inconsistency
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
262
diff
changeset
|
5059 ## "ProtocolName" is absent, and has VR "CS" => wildcard is allowed |
a2719263fd04
test_study_series_find_inconsistency
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
262
diff
changeset
|
5060 ## |
a2719263fd04
test_study_series_find_inconsistency
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
262
diff
changeset
|
5061 |
a2719263fd04
test_study_series_find_inconsistency
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
262
diff
changeset
|
5062 # At the study level, the "ProtocolName" tag is not allowed, but |
a2719263fd04
test_study_series_find_inconsistency
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
262
diff
changeset
|
5063 # is wiped out by the normalization |
a2719263fd04
test_study_series_find_inconsistency
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
262
diff
changeset
|
5064 self.assertEqual(0, CountAnswers({ |
a2719263fd04
test_study_series_find_inconsistency
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
262
diff
changeset
|
5065 'Level' : 'Study', |
a2719263fd04
test_study_series_find_inconsistency
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
262
diff
changeset
|
5066 'Query' : { |
a2719263fd04
test_study_series_find_inconsistency
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
262
diff
changeset
|
5067 'ProtocolName' : 'NOPE' |
a2719263fd04
test_study_series_find_inconsistency
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
262
diff
changeset
|
5068 }, |
a2719263fd04
test_study_series_find_inconsistency
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
262
diff
changeset
|
5069 'Normalize' : False |
a2719263fd04
test_study_series_find_inconsistency
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
262
diff
changeset
|
5070 })) |
a2719263fd04
test_study_series_find_inconsistency
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
262
diff
changeset
|
5071 self.assertEqual(0, CountAnswers({ |
a2719263fd04
test_study_series_find_inconsistency
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
262
diff
changeset
|
5072 'Level' : 'Study', |
a2719263fd04
test_study_series_find_inconsistency
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
262
diff
changeset
|
5073 'Query' : { |
a2719263fd04
test_study_series_find_inconsistency
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
262
diff
changeset
|
5074 'ProtocolName' : '*' # Wildcard matching => no match, as the tag is absent |
a2719263fd04
test_study_series_find_inconsistency
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
262
diff
changeset
|
5075 }, |
a2719263fd04
test_study_series_find_inconsistency
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
262
diff
changeset
|
5076 'Normalize' : False |
a2719263fd04
test_study_series_find_inconsistency
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
262
diff
changeset
|
5077 })) |
a2719263fd04
test_study_series_find_inconsistency
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
262
diff
changeset
|
5078 self.assertEqual(1, CountAnswers({ |
a2719263fd04
test_study_series_find_inconsistency
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
262
diff
changeset
|
5079 'Level' : 'Study', |
a2719263fd04
test_study_series_find_inconsistency
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
262
diff
changeset
|
5080 'Query' : { |
a2719263fd04
test_study_series_find_inconsistency
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
262
diff
changeset
|
5081 'ProtocolName' : 'THIS^VALUE^IS^WIPED^OUT' |
a2719263fd04
test_study_series_find_inconsistency
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
262
diff
changeset
|
5082 }, |
a2719263fd04
test_study_series_find_inconsistency
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
262
diff
changeset
|
5083 'Normalize' : True |
a2719263fd04
test_study_series_find_inconsistency
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
262
diff
changeset
|
5084 })) |
a2719263fd04
test_study_series_find_inconsistency
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
262
diff
changeset
|
5085 self.assertEqual(1, CountAnswers({ |
a2719263fd04
test_study_series_find_inconsistency
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
262
diff
changeset
|
5086 'Level' : 'Study', |
a2719263fd04
test_study_series_find_inconsistency
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
262
diff
changeset
|
5087 'Query' : { |
a2719263fd04
test_study_series_find_inconsistency
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
262
diff
changeset
|
5088 'ProtocolName' : '*' # Matches, as wiped out by the normalization |
a2719263fd04
test_study_series_find_inconsistency
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
262
diff
changeset
|
5089 }, |
a2719263fd04
test_study_series_find_inconsistency
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
262
diff
changeset
|
5090 'Normalize' : True |
a2719263fd04
test_study_series_find_inconsistency
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
262
diff
changeset
|
5091 })) |
a2719263fd04
test_study_series_find_inconsistency
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
262
diff
changeset
|
5092 |
a2719263fd04
test_study_series_find_inconsistency
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
262
diff
changeset
|
5093 for normalize in [ True, False ]: |
a2719263fd04
test_study_series_find_inconsistency
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
262
diff
changeset
|
5094 # At the series level, the "ProtocolName" tag is allowed, and |
a2719263fd04
test_study_series_find_inconsistency
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
262
diff
changeset
|
5095 # normalization has no effect |
a2719263fd04
test_study_series_find_inconsistency
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
262
diff
changeset
|
5096 |
a2719263fd04
test_study_series_find_inconsistency
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
262
diff
changeset
|
5097 self.assertEqual(1, CountAnswers({ |
a2719263fd04
test_study_series_find_inconsistency
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
262
diff
changeset
|
5098 'Level' : 'Series', |
a2719263fd04
test_study_series_find_inconsistency
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
262
diff
changeset
|
5099 'Query' : { |
a2719263fd04
test_study_series_find_inconsistency
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
262
diff
changeset
|
5100 'ProtocolName' : '' # Universal matching |
a2719263fd04
test_study_series_find_inconsistency
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
262
diff
changeset
|
5101 }, |
a2719263fd04
test_study_series_find_inconsistency
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
262
diff
changeset
|
5102 'Normalize' : normalize, |
a2719263fd04
test_study_series_find_inconsistency
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
262
diff
changeset
|
5103 })) |
a2719263fd04
test_study_series_find_inconsistency
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
262
diff
changeset
|
5104 self.assertEqual(0, CountAnswers({ |
a2719263fd04
test_study_series_find_inconsistency
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
262
diff
changeset
|
5105 'Level' : 'Series', |
a2719263fd04
test_study_series_find_inconsistency
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
262
diff
changeset
|
5106 'Query' : { |
a2719263fd04
test_study_series_find_inconsistency
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
262
diff
changeset
|
5107 'ProtocolName' : '*' # Wildcard matching => no match, as the tag is absent |
a2719263fd04
test_study_series_find_inconsistency
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
262
diff
changeset
|
5108 }, |
a2719263fd04
test_study_series_find_inconsistency
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
262
diff
changeset
|
5109 'Normalize' : normalize, |
a2719263fd04
test_study_series_find_inconsistency
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
262
diff
changeset
|
5110 })) |
a2719263fd04
test_study_series_find_inconsistency
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
262
diff
changeset
|
5111 self.assertEqual(0, CountAnswers({ |
a2719263fd04
test_study_series_find_inconsistency
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
262
diff
changeset
|
5112 'Level' : 'Series', |
a2719263fd04
test_study_series_find_inconsistency
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
262
diff
changeset
|
5113 'Query' : { |
a2719263fd04
test_study_series_find_inconsistency
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
262
diff
changeset
|
5114 'ProtocolName' : '*MISMATCHED^VALUE*' |
a2719263fd04
test_study_series_find_inconsistency
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
262
diff
changeset
|
5115 }, |
a2719263fd04
test_study_series_find_inconsistency
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
262
diff
changeset
|
5116 'Normalize' : normalize, |
a2719263fd04
test_study_series_find_inconsistency
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
262
diff
changeset
|
5117 })) |
a2719263fd04
test_study_series_find_inconsistency
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
262
diff
changeset
|
5118 |
a2719263fd04
test_study_series_find_inconsistency
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
262
diff
changeset
|
5119 self.assertEqual(1, CountAnswers({ |
a2719263fd04
test_study_series_find_inconsistency
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
262
diff
changeset
|
5120 'Level' : 'Study', |
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5121 'Query' : { |
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5122 'ProtocolName' : '' # Universal matching |
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5123 }, |
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5124 'Normalize' : normalize, |
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5125 })) |
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5126 |
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5127 |
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5128 ## |
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5129 ## "StudyInstanceUID" is present, and has VR "UI" => wildcard is not allowed |
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5130 ## |
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5131 |
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5132 for level in [ 'Study', 'Series' ] : |
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5133 for normalize in [ True, False ]: |
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5134 self.assertEqual(1, CountAnswers({ |
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5135 'Level' : level, |
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5136 'Query' : { |
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5137 'StudyInstanceUID' : '' # Universal matching |
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5138 }, |
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5139 'Normalize' : normalize, |
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5140 })) |
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5141 self.assertEqual(0, CountAnswers({ |
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5142 'Level' : level, |
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5143 'Query' : { |
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5144 'StudyInstanceUID' : 'MISMATCHED^VALUE' |
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5145 }, |
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5146 'Normalize' : normalize, |
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5147 })) |
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5148 self.assertEqual(1, CountAnswers({ |
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5149 'Level' : level, |
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5150 'Query' : { |
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5151 'StudyInstanceUID' : '4.5.6' # This is the actual value |
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5152 }, |
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5153 'Normalize' : normalize, |
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5154 })) |
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5155 |
269 | 5156 # Wildcard matching is not allowed for this VR |
263
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5157 # This test fails on Orthanc <= 1.5.8 |
269 | 5158 self.assertRaises(Exception, lambda: CountAnswers({ |
263
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5159 'Level' : level, |
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5160 'Query' : { |
269 | 5161 'StudyInstanceUID' : '*' |
263
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5162 }, |
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5163 'Normalize' : normalize, |
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5164 })) |
265 | 5165 |
5166 | |
5167 def test_rendered(self): | |
5168 # New in Orthanc 1.6.0 | |
5169 i = UploadInstance(_REMOTE, 'ColorTestMalaterre.dcm')['ID'] | |
5170 im = GetImage(_REMOTE, '/instances/%s/rendered' % i) | |
5171 self.assertEqual("RGB", im.mode) | |
5172 self.assertEqual(41, im.size[0]) | |
5173 self.assertEqual(41, im.size[1]) | |
5174 | |
5175 # http://effbot.org/zone/pil-comparing-images.htm | |
5176 truth = Image.open(GetDatabasePath('ColorTestMalaterre.png')) | |
5177 self.assertTrue(ImageChops.difference(im, truth).getbbox() is None) | |
5178 | |
5179 im = GetImage(_REMOTE, '/instances/%s/rendered?width=10' % i) | |
5180 self.assertEqual("RGB", im.mode) | |
5181 self.assertEqual(10, im.size[0]) | |
5182 self.assertEqual(10, im.size[1]) | |
5183 | |
5184 im = GetImage(_REMOTE, '/instances/%s/rendered?height=10' % i) | |
5185 self.assertEqual("RGB", im.mode) | |
5186 self.assertEqual(10, im.size[0]) | |
5187 self.assertEqual(10, im.size[1]) | |
5188 | |
5189 im = GetImage(_REMOTE, '/instances/%s/rendered?height=128' % i) | |
5190 self.assertEqual("RGB", im.mode) | |
5191 self.assertEqual(128, im.size[0]) | |
5192 self.assertEqual(128, im.size[1]) | |
5193 | |
5194 im = GetImage(_REMOTE, '/instances/%s/rendered?height=10&smooth=0' % i) | |
5195 self.assertEqual("RGB", im.mode) | |
5196 self.assertEqual(10, im.size[0]) | |
5197 self.assertEqual(10, im.size[1]) | |
5198 | |
5199 im = GetImage(_REMOTE, '/instances/%s/rendered?height=10&smooth=1' % i) | |
5200 self.assertEqual("RGB", im.mode) | |
5201 self.assertEqual(10, im.size[0]) | |
5202 self.assertEqual(10, im.size[1]) | |
5203 | |
5204 im = GetImage(_REMOTE, '/instances/%s/rendered?height=5&width=10' % i) | |
5205 self.assertEqual("RGB", im.mode) | |
5206 self.assertEqual(5, im.size[0]) | |
5207 self.assertEqual(5, im.size[1]) | |
5208 | |
5209 | |
5210 # Grayscale image | |
5211 i = UploadInstance(_REMOTE, 'Brainix/Flair/IM-0001-0001.dcm')['ID'] | |
5212 im = GetImage(_REMOTE, '/instances/%s/rendered' % i) | |
5213 self.assertEqual("L", im.mode) | |
5214 self.assertEqual(288, im.size[0]) | |
5215 self.assertEqual(288, im.size[1]) | |
5216 self.assertEqual(0, im.getpixel((0, 0))) | |
5217 | |
5218 # Those are the original windowing parameters that are written | |
5219 # inside the DICOM file | |
5220 im2 = GetImage(_REMOTE, '/instances/%s/rendered?window-center=248.009544468547&window-width=431.351843817788' % i) | |
5221 self.assertEqual("L", im2.mode) | |
5222 self.assertEqual(288, im2.size[0]) | |
5223 self.assertEqual(288, im2.size[1]) | |
5224 self.assertTrue(ImageChops.difference(im, im2).getbbox() is None) | |
5225 | |
5226 im = GetImage(_REMOTE, '/instances/%s/rendered?width=512&smooth=0' % i) | |
5227 self.assertEqual("L", im.mode) | |
5228 self.assertEqual(512, im.size[0]) | |
5229 self.assertEqual(512, im.size[1]) | |
5230 | |
5231 im = GetImage(_REMOTE, '/instances/%s/rendered?width=10&smooth=0' % i) | |
5232 self.assertEqual("L", im.mode) | |
5233 self.assertEqual(10, im.size[0]) | |
5234 self.assertEqual(10, im.size[1]) | |
5235 | |
5236 im = GetImage(_REMOTE, '/instances/%s/rendered?width=10&smooth=1' % i) | |
5237 self.assertEqual("L", im.mode) | |
5238 self.assertEqual(10, im.size[0]) | |
5239 self.assertEqual(10, im.size[1]) | |
5240 | |
5241 im = GetImage(_REMOTE, '/instances/%s/rendered?width=1&window-center=-1000' % i) | |
5242 self.assertEqual("L", im.mode) | |
5243 self.assertEqual(1, im.size[0]) | |
5244 self.assertEqual(1, im.size[1]) | |
5245 self.assertEqual(255, im.getpixel((0, 0))) | |
5246 | |
5247 im = GetImage(_REMOTE, '/instances/%s/rendered?width=1&window-center=1000' % i) | |
5248 self.assertEqual("L", im.mode) | |
5249 self.assertEqual(1, im.size[0]) | |
5250 self.assertEqual(1, im.size[1]) | |
5251 self.assertEqual(0, im.getpixel((0, 0))) | |
5252 | |
5253 | |
5254 # Test monochrome 1 | |
5255 i = UploadInstance(_REMOTE, 'Issue44/Monochrome1.dcm')['ID'] | |
5256 im = GetImage(_REMOTE, '/instances/%s/rendered' % i) | |
5257 self.assertEqual("L", im.mode) | |
5258 self.assertEqual(2010, im.size[0]) | |
5259 self.assertEqual(2446, im.size[1]) | |
5260 self.assertEqual(0, im.getpixel((0, 0))) | |
5261 im = GetImage(_REMOTE, '/instances/%s/rendered?width=20' % i) | |
5262 self.assertEqual("L", im.mode) | |
5263 self.assertEqual(20, im.size[0]) | |
5264 self.assertEqual(24, im.size[1]) | |
5265 im = GetImage(_REMOTE, '/instances/%s/rendered?height=24' % i) | |
5266 self.assertEqual("L", im.mode) | |
5267 self.assertEqual(20, im.size[0]) | |
5268 self.assertEqual(24, im.size[1]) | |
5269 im = GetImage(_REMOTE, '/instances/%s/rendered?width=10&height=24' % i) | |
5270 self.assertEqual("L", im.mode) | |
5271 self.assertEqual(10, im.size[0]) | |
5272 self.assertEqual(12, im.size[1]) | |
5273 im = GetImage(_REMOTE, '/instances/%s/rendered?width=40&height=24' % i) | |
5274 self.assertEqual("L", im.mode) | |
5275 self.assertEqual(20, im.size[0]) | |
5276 self.assertEqual(24, im.size[1]) | |
268
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5277 |
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5278 |
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5279 def test_bitbucket_issue_154(self): |
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5280 # "Matching against list of UID-s by C-MOVE" |
319 | 5281 # https://bugs.orthanc-server.com/show_bug.cgi?id=154 |
268
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5282 a = UploadInstance(_REMOTE, 'Issue154-d1.dcm') ['ID'] |
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5283 b = UploadInstance(_REMOTE, 'Issue154-d2.dcm') ['ID'] |
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5284 |
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5285 study = '1.2.826.0.1.3680043.8.498.35214236271657363033644818354280454731' |
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5286 series1 = '1.2.826.0.1.3680043.8.498.12243321927795467590791662266352305113' |
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5287 series2 = '1.2.826.0.1.3680043.8.498.43769499931624584079690260699536473555' |
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5288 |
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5289 # C-FIND is working on list of UIDs |
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5290 i = CallFindScu([ '-k', 'QueryRetrieveLevel=SERIES', |
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5291 '-k', 'StudyInstanceUID=%s' % study, |
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5292 '-k', 'SeriesInstanceUID=%s\\%s' % (series1, series2) ]) |
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5293 series = re.findall('\(0020,000e\).*?\[(.*?)\]', i) |
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5294 self.assertEqual(2, len(series)) |
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5295 self.assertTrue(series1 in series) |
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5296 self.assertTrue(series2 in series) |
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5297 |
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5298 # Individual retrieval is working in Orthanc < 1.6.0 |
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5299 self.assertEqual(0, len(DoGet(_LOCAL, '/instances'))) |
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5300 self.assertTrue(MonitorJob(_REMOTE, lambda: CallMoveScu([ |
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5301 '--study', '-k', 'QueryRetrieveLevel=SERIES', |
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5302 '-k', 'StudyInstanceUID=%s' % study, |
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5303 '-k', 'SeriesInstanceUID=%s' % series1, |
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5304 ]))) |
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5305 self.assertTrue(MonitorJob(_REMOTE, lambda: CallMoveScu([ |
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5306 '--study', '-k', 'QueryRetrieveLevel=SERIES', |
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5307 '-k', 'StudyInstanceUID=%s' % study, |
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5308 '-k', 'SeriesInstanceUID=%s' % series2, |
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5309 ]))) |
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5310 self.assertEqual(2, len(DoGet(_LOCAL, '/instances'))) |
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5311 |
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5312 DropOrthanc(_LOCAL) |
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5313 |
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5314 # But list matching is working only in Orthanc >= 1.6.0 |
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5315 self.assertEqual(0, len(DoGet(_LOCAL, '/instances'))) |
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5316 self.assertTrue(MonitorJob(_REMOTE, lambda: CallMoveScu([ |
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5317 '--study', '-k', 'QueryRetrieveLevel=SERIES', |
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5318 '-k', 'StudyInstanceUID=%s' % study, |
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5319 '-k', 'SeriesInstanceUID=%s\\%s' % (series1, series2), |
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5320 ]))) |
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5321 self.assertEqual(2, len(DoGet(_LOCAL, '/instances'))) |
279
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5322 |
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5323 |
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5324 def test_storage_commitment_api(self): |
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5325 # Storage commitment is available since Orthanc 1.6.0 |
280
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5326 |
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5327 def WaitTransaction(uid): |
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5328 while True: |
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5329 s = DoGet(_REMOTE, '/storage-commitment/%s' % uid) |
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5330 if s['Status'] != 'Pending': |
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5331 return s |
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5332 else: |
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|
5333 time.sleep(0.1) |
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5334 |
281 | 5335 instance = UploadInstance(_REMOTE, 'DummyCT.dcm') |
279
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5336 sopClassUid = '1.2.840.10008.5.1.4.1.1.4' |
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5337 sopInstanceUid = '1.2.840.113619.2.176.2025.1499492.7040.1171286242.109' |
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5338 |
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5339 # Against self |
281 | 5340 transaction = DoPost(_REMOTE, '/modalities/self/storage-commitment', { |
5341 "DicomInstances" : [ [ sopClassUid, sopInstanceUid ] ], | |
5342 }) ['ID'] | |
279
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5343 self.assertTrue(transaction.startswith('2.25.')) |
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5344 |
280
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5345 result = WaitTransaction(transaction) |
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|
5346 self.assertEqual('ORTHANC', result['RemoteAET']) |
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5347 self.assertEqual('Success', result['Status']) |
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5348 self.assertEqual(1, len(result['Success'])) |
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5349 self.assertEqual(0, len(result['Failures'])) |
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5350 self.assertEqual(sopClassUid, result['Success'][0]['SOPClassUID']) |
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5351 self.assertEqual(sopInstanceUid, result['Success'][0]['SOPInstanceUID']) |
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5352 |
281 | 5353 tmp = DoPost(_REMOTE, '/modalities/self/storage-commitment', { |
5354 "DicomInstances" : [ | |
5355 { 'SOPClassUID' : sopClassUid, | |
5356 'SOPInstanceUID' : sopInstanceUid }, | |
5357 ], | |
5358 }) | |
5359 self.assertEqual(tmp['Path'], '/storage-commitment/%s' % tmp['ID']) | |
5360 self.assertEqual(result, WaitTransaction(transaction)) | |
5361 | |
5362 tmp = DoPost(_REMOTE, '/modalities/self/storage-commitment', { | |
5363 "Resources" : [ | |
5364 instance['ID'], | |
5365 instance['ParentSeries'], | |
5366 instance['ParentStudy'], | |
5367 instance['ParentPatient'], | |
5368 ] | |
5369 }) | |
280
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5370 self.assertEqual(tmp['Path'], '/storage-commitment/%s' % tmp['ID']) |
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5371 self.assertEqual(result, WaitTransaction(transaction)) |
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|
5372 |
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5373 |
281 | 5374 transaction = DoPost(_REMOTE, '/modalities/self/storage-commitment', { |
5375 "DicomInstances" : [ | |
5376 [ 'nope', 'nope2' ], | |
5377 [ sopClassUid, sopInstanceUid ], | |
5378 ], | |
5379 }) ['ID'] | |
279
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5380 self.assertTrue(transaction.startswith('2.25.')) |
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|
5381 |
280
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|
5382 result = WaitTransaction(transaction) |
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|
5383 self.assertEqual('ORTHANC', result['RemoteAET']) |
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|
5384 self.assertEqual('Failure', result['Status']) |
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5385 self.assertEqual(1, len(result['Success'])) |
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|
5386 self.assertEqual(1, len(result['Failures'])) |
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|
5387 self.assertEqual(sopClassUid, result['Success'][0]['SOPClassUID']) |
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|
5388 self.assertEqual(sopInstanceUid, result['Success'][0]['SOPInstanceUID']) |
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|
5389 self.assertEqual('nope', result['Failures'][0]['SOPClassUID']) |
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5390 self.assertEqual('nope2', result['Failures'][0]['SOPInstanceUID']) |
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|
5391 self.assertEqual(274, result['Failures'][0]['FailureReason']) |
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|
5392 |
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|
5393 # Cannot remove items from a failed storage commitment transaction |
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|
5394 self.assertRaises(Exception, lambda: |
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|
5395 DoPost(_REMOTE, '/storage-commitment/%s/remove' % transaction)) |
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|
5396 |
279
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|
5397 |
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|
5398 # Against Orthanc 0.8.6, that does not support storage commitment |
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|
5399 self.assertRaises(Exception, lambda: |
281 | 5400 DoPost(_REMOTE, '/modalities/orthanctest/storage-commitment', { |
5401 "DicomInstances" : [ | |
5402 [ sopClassUid, sopInstanceUid ], | |
5403 ] | |
5404 })) | |
279
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|
5405 |
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|
5406 |
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|
5407 |
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|
5408 def test_storage_commitment_store(self): |
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5409 # Storage commitment is available since Orthanc 1.6.0 |
280
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|
5410 |
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|
5411 def WaitTransaction(uid): |
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5412 while True: |
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|
5413 s = DoGet(_REMOTE, '/storage-commitment/%s' % uid) |
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|
5414 if s['Status'] != 'Pending': |
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|
5415 return s |
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|
5416 else: |
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|
5417 time.sleep(0.1) |
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|
5418 |
279
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5419 i = UploadInstance(_REMOTE, 'DummyCT.dcm')['ID'] |
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5420 self.assertEqual(1, len(DoGet(_REMOTE, '/instances'))) |
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5421 self.assertEqual(0, len(DoGet(_LOCAL, '/instances'))) |
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|
5422 |
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5423 # The Orthanc 0.8.6 from "_LOCAL" does not support storage commitment |
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5424 self.assertRaises(Exception, lambda: DoPost(_REMOTE, '/modalities/orthanctest/store', { |
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5425 'Resources' : [ i ], |
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5426 'StorageCommitment' : True, |
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|
5427 })) |
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|
5428 |
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5429 j = DoPost(_REMOTE, '/modalities/orthanctest/store', { |
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5430 'Resources' : [ i ], |
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5431 'StorageCommitment' : False, |
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5432 }) |
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5433 self.assertEqual(1, len(DoGet(_LOCAL, '/instances'))) |
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5434 |
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5435 j = DoPost(_REMOTE, '/modalities/self/store', { |
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5436 'Resources' : [ i ], |
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5437 'StorageCommitment' : True, |
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5438 }) |
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5439 |
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5440 transaction = j['StorageCommitmentTransactionUID'] |
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5441 self.assertTrue(transaction.startswith('2.25.')) |
280
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|
5442 |
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|
5443 result = WaitTransaction(transaction) |
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5444 self.assertEqual('ORTHANC', result['RemoteAET']) |
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5445 self.assertEqual('Success', result['Status']) |
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|
5446 self.assertEqual(1, len(result['Success'])) |
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5447 self.assertEqual(0, len(result['Failures'])) |
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5448 self.assertEqual('1.2.840.10008.5.1.4.1.1.4', result['Success'][0]['SOPClassUID']) |
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5449 self.assertEqual('1.2.840.113619.2.176.2025.1499492.7040.1171286242.109', |
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|
5450 result['Success'][0]['SOPInstanceUID']) |
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|
5451 |
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|
5452 self.assertEqual(1, len(DoGet(_REMOTE, '/instances'))) |
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|
5453 DoPost(_REMOTE, '/storage-commitment/%s/remove' % transaction) |
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|
5454 self.assertEqual(0, len(DoGet(_REMOTE, '/instances'))) |
285
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5455 |
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5456 |
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5457 def test_store_straight(self): # New in Orthanc 1.6.1 |
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changeset
|
5458 self.assertEqual(0, len(DoGet(_LOCAL, '/instances'))) |
281a32ecc5c1
test_store_straight
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diff
changeset
|
5459 self.assertEqual(0, len(DoGet(_REMOTE, '/instances'))) |
281a32ecc5c1
test_store_straight
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
281
diff
changeset
|
5460 |
281a32ecc5c1
test_store_straight
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
281
diff
changeset
|
5461 with open(GetDatabasePath('DummyCT.dcm'), 'rb') as f: |
281a32ecc5c1
test_store_straight
Sebastien Jodogne <s.jodogne@gmail.com>
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281
diff
changeset
|
5462 dicom = f.read() |
281a32ecc5c1
test_store_straight
Sebastien Jodogne <s.jodogne@gmail.com>
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281
diff
changeset
|
5463 |
281a32ecc5c1
test_store_straight
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
281
diff
changeset
|
5464 self.assertRaises(Exception, lambda: DoPost( |
281a32ecc5c1
test_store_straight
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
281
diff
changeset
|
5465 _REMOTE, '/modalities/orthanctest/store-straight', 'nope', 'nope')) |
281a32ecc5c1
test_store_straight
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
281
diff
changeset
|
5466 |
281a32ecc5c1
test_store_straight
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
281
diff
changeset
|
5467 answer = DoPost(_REMOTE, '/modalities/orthanctest/store-straight', dicom, 'nope') |
281a32ecc5c1
test_store_straight
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
281
diff
changeset
|
5468 |
281a32ecc5c1
test_store_straight
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
281
diff
changeset
|
5469 self.assertEqual('1.2.840.10008.5.1.4.1.1.4', |
281a32ecc5c1
test_store_straight
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
281
diff
changeset
|
5470 answer['SOPClassUID']) |
281a32ecc5c1
test_store_straight
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
281
diff
changeset
|
5471 self.assertEqual('1.2.840.113619.2.176.2025.1499492.7040.1171286242.109', |
281a32ecc5c1
test_store_straight
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
281
diff
changeset
|
5472 answer['SOPInstanceUID']) |
281a32ecc5c1
test_store_straight
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
281
diff
changeset
|
5473 |
281a32ecc5c1
test_store_straight
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
281
diff
changeset
|
5474 self.assertEqual(1, len(DoGet(_LOCAL, '/instances'))) |
281a32ecc5c1
test_store_straight
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
281
diff
changeset
|
5475 self.assertEqual(0, len(DoGet(_REMOTE, '/instances'))) |
289
4a70411ac9ad
test_storescu_transcoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
285
diff
changeset
|
5476 |
4a70411ac9ad
test_storescu_transcoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
285
diff
changeset
|
5477 |
4a70411ac9ad
test_storescu_transcoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
285
diff
changeset
|
5478 def test_storescu_transcoding(self): # New in Orthanc 1.7.0 |
4a70411ac9ad
test_storescu_transcoding
Sebastien Jodogne <s.jodogne@gmail.com>
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diff
changeset
|
5479 # Add a RLE-encoded DICOM file |
4a70411ac9ad
test_storescu_transcoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
285
diff
changeset
|
5480 i = UploadInstance(_REMOTE, 'TransferSyntaxes/1.2.840.10008.1.2.5.dcm')['ID'] |
4a70411ac9ad
test_storescu_transcoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
285
diff
changeset
|
5481 self.assertEqual(0, len(DoGet(_LOCAL, '/instances'))) |
4a70411ac9ad
test_storescu_transcoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
285
diff
changeset
|
5482 self.assertEqual(1, len(DoGet(_REMOTE, '/instances'))) |
4a70411ac9ad
test_storescu_transcoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
285
diff
changeset
|
5483 rleSize = len(DoGet(_REMOTE, '/instances/%s/file' % i)) |
4a70411ac9ad
test_storescu_transcoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
285
diff
changeset
|
5484 |
4a70411ac9ad
test_storescu_transcoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
285
diff
changeset
|
5485 # Export the instance, with transcoding: "_REMOTE" is the |
4a70411ac9ad
test_storescu_transcoding
Sebastien Jodogne <s.jodogne@gmail.com>
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285
diff
changeset
|
5486 # Orthanc server being tested |
4a70411ac9ad
test_storescu_transcoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
285
diff
changeset
|
5487 try: |
4a70411ac9ad
test_storescu_transcoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
285
diff
changeset
|
5488 DoDelete(_REMOTE, '/modalities/toto') |
4a70411ac9ad
test_storescu_transcoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
285
diff
changeset
|
5489 except: |
4a70411ac9ad
test_storescu_transcoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
285
diff
changeset
|
5490 pass |
4a70411ac9ad
test_storescu_transcoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
285
diff
changeset
|
5491 |
4a70411ac9ad
test_storescu_transcoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
285
diff
changeset
|
5492 params = DoGet(_REMOTE, '/modalities?expand') ['orthanctest'] |
4a70411ac9ad
test_storescu_transcoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
285
diff
changeset
|
5493 DoPut(_REMOTE, '/modalities/toto', params) |
4a70411ac9ad
test_storescu_transcoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
285
diff
changeset
|
5494 DoPost(_REMOTE, '/modalities/toto/store', str(i), 'text/plain') |
4a70411ac9ad
test_storescu_transcoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
285
diff
changeset
|
5495 j = DoGet(_LOCAL, '/instances') |
4a70411ac9ad
test_storescu_transcoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
285
diff
changeset
|
5496 self.assertEqual(1, len(j)) |
4a70411ac9ad
test_storescu_transcoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
285
diff
changeset
|
5497 uncompressedSize = len(DoGet(_LOCAL, '/instances/%s/file' % j[0])) |
4a70411ac9ad
test_storescu_transcoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
285
diff
changeset
|
5498 self.assertTrue(uncompressedSize > rleSize / 2) |
4a70411ac9ad
test_storescu_transcoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
285
diff
changeset
|
5499 |
4a70411ac9ad
test_storescu_transcoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
285
diff
changeset
|
5500 # Export, with transcoding disabled => this fails |
4a70411ac9ad
test_storescu_transcoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
285
diff
changeset
|
5501 params['AllowTranscoding'] = False |
4a70411ac9ad
test_storescu_transcoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
285
diff
changeset
|
5502 DoPut(_REMOTE, '/modalities/toto', params) |
4a70411ac9ad
test_storescu_transcoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
285
diff
changeset
|
5503 self.assertRaises(Exception, lambda: DoPost(_REMOTE, '/modalities/toto/store', str(i), 'text/plain')) |
290
b5333f87065b
test_bitbucket_issue_169
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
289
diff
changeset
|
5504 |
b5333f87065b
test_bitbucket_issue_169
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
289
diff
changeset
|
5505 |
b5333f87065b
test_bitbucket_issue_169
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
289
diff
changeset
|
5506 def test_bitbucket_issue_169(self): |
b5333f87065b
test_bitbucket_issue_169
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
289
diff
changeset
|
5507 with open(GetDatabasePath('Issue169.dcm.bz2'), 'rb') as f: |
b5333f87065b
test_bitbucket_issue_169
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
289
diff
changeset
|
5508 dicom = bz2.decompress(f.read()) |
b5333f87065b
test_bitbucket_issue_169
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
289
diff
changeset
|
5509 |
b5333f87065b
test_bitbucket_issue_169
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
289
diff
changeset
|
5510 self.assertEqual('1.2.840.10008.1.2.1', GetTransferSyntax(dicom)) |
b5333f87065b
test_bitbucket_issue_169
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
289
diff
changeset
|
5511 |
b5333f87065b
test_bitbucket_issue_169
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
289
diff
changeset
|
5512 self.assertEqual(44350560, len(dicom)) |
b5333f87065b
test_bitbucket_issue_169
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
289
diff
changeset
|
5513 i = DoPost(_REMOTE, '/instances', dicom, 'application/dicom') ['ID'] |
b5333f87065b
test_bitbucket_issue_169
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
289
diff
changeset
|
5514 |
b5333f87065b
test_bitbucket_issue_169
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
289
diff
changeset
|
5515 tags = DoGet(_REMOTE, '/instances/%s/tags' % i) |
b5333f87065b
test_bitbucket_issue_169
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
289
diff
changeset
|
5516 self.assertEqual('NORMAL', tags['1337,1001']['Value']) |
b5333f87065b
test_bitbucket_issue_169
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
289
diff
changeset
|
5517 |
b5333f87065b
test_bitbucket_issue_169
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
289
diff
changeset
|
5518 self.assertEqual(0, len(DoGet(_LOCAL, '/instances'))) |
b5333f87065b
test_bitbucket_issue_169
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
289
diff
changeset
|
5519 DoPost(_REMOTE, '/modalities/orthanctest/store', str(i), 'text/plain') |
b5333f87065b
test_bitbucket_issue_169
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
289
diff
changeset
|
5520 j = DoGet(_LOCAL, '/instances') |
b5333f87065b
test_bitbucket_issue_169
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
289
diff
changeset
|
5521 self.assertEqual(1, len(j)) |
b5333f87065b
test_bitbucket_issue_169
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
289
diff
changeset
|
5522 |
b5333f87065b
test_bitbucket_issue_169
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
289
diff
changeset
|
5523 # In Orthanc <= 1.6.1, transfer syntax changed from "Explicit |
b5333f87065b
test_bitbucket_issue_169
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
289
diff
changeset
|
5524 # VR Little Endian" (1.2.840.10008.1.2.1) to "Implicit VR |
b5333f87065b
test_bitbucket_issue_169
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
289
diff
changeset
|
5525 # Little Endian" (1.2.840.10008.1.2) |
291
cfa785074c64
test_modify_transcode
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
290
diff
changeset
|
5526 self.assertEqual('1.2.840.10008.1.2.1', GetTransferSyntax( |
cfa785074c64
test_modify_transcode
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
290
diff
changeset
|
5527 DoGet(_LOCAL, '/instances/%s/file' % j[0]))) |
290
b5333f87065b
test_bitbucket_issue_169
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
289
diff
changeset
|
5528 |
b5333f87065b
test_bitbucket_issue_169
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
289
diff
changeset
|
5529 # In Orthanc <= 1.6.1, the value of the private tags was lost |
b5333f87065b
test_bitbucket_issue_169
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
289
diff
changeset
|
5530 # because of this transcoding |
b5333f87065b
test_bitbucket_issue_169
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
289
diff
changeset
|
5531 tags = DoGet(_LOCAL, '/instances/%s/tags' % j[0]) |
b5333f87065b
test_bitbucket_issue_169
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
289
diff
changeset
|
5532 self.assertEqual('NORMAL', tags['1337,1001']['Value']) |
291
cfa785074c64
test_modify_transcode
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
290
diff
changeset
|
5533 |
cfa785074c64
test_modify_transcode
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
290
diff
changeset
|
5534 |
302
22b6dd0f8c84
test_modify_transcode_study
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
301
diff
changeset
|
5535 def test_modify_transcode_instance(self): |
291
cfa785074c64
test_modify_transcode
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
290
diff
changeset
|
5536 i = UploadInstance(_REMOTE, 'KarstenHilbertRF.dcm')['ID'] |
cfa785074c64
test_modify_transcode
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
290
diff
changeset
|
5537 self.assertEqual('1.2.840.10008.1.2.1', GetTransferSyntax( |
cfa785074c64
test_modify_transcode
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
290
diff
changeset
|
5538 DoGet(_REMOTE, '/instances/%s/file' % i))) |
cfa785074c64
test_modify_transcode
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
290
diff
changeset
|
5539 |
299
c2144cf4bd83
HasGdcmPlugin() test
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
293
diff
changeset
|
5540 a = ExtractDicomTags(DoGet(_REMOTE, '/instances/%s/file' % i), [ 'SOPInstanceUID' ]) [0] |
c2144cf4bd83
HasGdcmPlugin() test
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
293
diff
changeset
|
5541 self.assertTrue(len(a) > 20) |
c2144cf4bd83
HasGdcmPlugin() test
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
293
diff
changeset
|
5542 |
c2144cf4bd83
HasGdcmPlugin() test
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
293
diff
changeset
|
5543 SYNTAXES = [ |
c2144cf4bd83
HasGdcmPlugin() test
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
293
diff
changeset
|
5544 '1.2.840.10008.1.2', |
c2144cf4bd83
HasGdcmPlugin() test
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
293
diff
changeset
|
5545 '1.2.840.10008.1.2.1', |
300
d6c2eb5a2603
disabling test on Deflated Explicit VR Little Endian
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
299
diff
changeset
|
5546 #'1.2.840.10008.1.2.1.99', # Deflated Explicit VR Little Endian (cannot be decoded in debug mode if Orthanc is statically linked against DCMTK 3.6.5) |
299
c2144cf4bd83
HasGdcmPlugin() test
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
293
diff
changeset
|
5547 '1.2.840.10008.1.2.2', |
c2144cf4bd83
HasGdcmPlugin() test
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
293
diff
changeset
|
5548 '1.2.840.10008.1.2.4.50', |
c2144cf4bd83
HasGdcmPlugin() test
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
293
diff
changeset
|
5549 '1.2.840.10008.1.2.4.51', |
c2144cf4bd83
HasGdcmPlugin() test
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
293
diff
changeset
|
5550 '1.2.840.10008.1.2.4.57', |
c2144cf4bd83
HasGdcmPlugin() test
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
293
diff
changeset
|
5551 '1.2.840.10008.1.2.4.70', |
c2144cf4bd83
HasGdcmPlugin() test
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
293
diff
changeset
|
5552 ] |
c2144cf4bd83
HasGdcmPlugin() test
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
293
diff
changeset
|
5553 |
304 | 5554 if HasGdcmPlugin(_REMOTE): |
299
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HasGdcmPlugin() test
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
293
diff
changeset
|
5555 SYNTAXES = SYNTAXES + [ |
c2144cf4bd83
HasGdcmPlugin() test
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
293
diff
changeset
|
5556 '1.2.840.10008.1.2.4.80', # This makes DCMTK 3.6.2 crash |
c2144cf4bd83
HasGdcmPlugin() test
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
293
diff
changeset
|
5557 '1.2.840.10008.1.2.4.81', # This makes DCMTK 3.6.2 crash |
c2144cf4bd83
HasGdcmPlugin() test
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
293
diff
changeset
|
5558 '1.2.840.10008.1.2.4.90', # JPEG2k, unavailable without GDCM |
c2144cf4bd83
HasGdcmPlugin() test
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
293
diff
changeset
|
5559 '1.2.840.10008.1.2.4.91', # JPEG2k, unavailable without GDCM |
c2144cf4bd83
HasGdcmPlugin() test
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
293
diff
changeset
|
5560 ] |
c2144cf4bd83
HasGdcmPlugin() test
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
293
diff
changeset
|
5561 |
c2144cf4bd83
HasGdcmPlugin() test
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
293
diff
changeset
|
5562 for syntax in SYNTAXES: |
291
cfa785074c64
test_modify_transcode
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
290
diff
changeset
|
5563 transcoded = DoPost(_REMOTE, '/instances/%s/modify' % i, { |
cfa785074c64
test_modify_transcode
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
290
diff
changeset
|
5564 'Transcode' : syntax, |
299
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HasGdcmPlugin() test
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parents:
293
diff
changeset
|
5565 'Keep' : [ 'SOPInstanceUID' ], |
c2144cf4bd83
HasGdcmPlugin() test
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
293
diff
changeset
|
5566 'Force' : True, |
291
cfa785074c64
test_modify_transcode
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
290
diff
changeset
|
5567 }) |
cfa785074c64
test_modify_transcode
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
290
diff
changeset
|
5568 |
cfa785074c64
test_modify_transcode
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
290
diff
changeset
|
5569 self.assertEqual(syntax, GetTransferSyntax(transcoded)) |
292
e1827a4f5d3b
test_archive_transcode
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
291
diff
changeset
|
5570 |
299
c2144cf4bd83
HasGdcmPlugin() test
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
293
diff
changeset
|
5571 b = ExtractDicomTags(transcoded, [ 'SOPInstanceUID' ]) [0] |
c2144cf4bd83
HasGdcmPlugin() test
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
293
diff
changeset
|
5572 self.assertTrue(len(b) > 20) |
c2144cf4bd83
HasGdcmPlugin() test
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
293
diff
changeset
|
5573 if syntax in [ '1.2.840.10008.1.2.4.50', |
c2144cf4bd83
HasGdcmPlugin() test
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
293
diff
changeset
|
5574 '1.2.840.10008.1.2.4.51', |
c2144cf4bd83
HasGdcmPlugin() test
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
293
diff
changeset
|
5575 '1.2.840.10008.1.2.4.81', |
c2144cf4bd83
HasGdcmPlugin() test
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
293
diff
changeset
|
5576 '1.2.840.10008.1.2.4.91' ]: |
c2144cf4bd83
HasGdcmPlugin() test
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
293
diff
changeset
|
5577 # Lossy transcoding: The SOP instance UID must have changed |
c2144cf4bd83
HasGdcmPlugin() test
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
293
diff
changeset
|
5578 self.assertNotEqual(a, b) |
c2144cf4bd83
HasGdcmPlugin() test
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
293
diff
changeset
|
5579 else: |
c2144cf4bd83
HasGdcmPlugin() test
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
293
diff
changeset
|
5580 self.assertEqual(a, b) |
292
e1827a4f5d3b
test_archive_transcode
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
291
diff
changeset
|
5581 |
e1827a4f5d3b
test_archive_transcode
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
291
diff
changeset
|
5582 def test_archive_transcode(self): |
e1827a4f5d3b
test_archive_transcode
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
291
diff
changeset
|
5583 info = UploadInstance(_REMOTE, 'KarstenHilbertRF.dcm') |
e1827a4f5d3b
test_archive_transcode
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
291
diff
changeset
|
5584 |
293
032722c3e919
extended test_archive_transcode
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
292
diff
changeset
|
5585 # GET on "/media" |
292
e1827a4f5d3b
test_archive_transcode
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
291
diff
changeset
|
5586 z = GetArchive(_REMOTE, '/patients/%s/media' % info['ParentPatient']) |
e1827a4f5d3b
test_archive_transcode
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
291
diff
changeset
|
5587 self.assertEqual(2, len(z.namelist())) |
e1827a4f5d3b
test_archive_transcode
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
291
diff
changeset
|
5588 self.assertEqual('1.2.840.10008.1.2.1', GetTransferSyntax(z.read('IMAGES/IM0'))) |
e1827a4f5d3b
test_archive_transcode
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
291
diff
changeset
|
5589 |
e1827a4f5d3b
test_archive_transcode
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
291
diff
changeset
|
5590 self.assertRaises(Exception, lambda: DoGet(_REMOTE, '/patients/%s/media?transcode=nope' % info['ParentPatient'])) |
e1827a4f5d3b
test_archive_transcode
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
291
diff
changeset
|
5591 |
e1827a4f5d3b
test_archive_transcode
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
291
diff
changeset
|
5592 z = GetArchive(_REMOTE, '/patients/%s/media?transcode=1.2.840.10008.1.2.4.50' % info['ParentPatient']) |
e1827a4f5d3b
test_archive_transcode
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
291
diff
changeset
|
5593 self.assertEqual('1.2.840.10008.1.2.4.50', GetTransferSyntax(z.read('IMAGES/IM0'))) |
e1827a4f5d3b
test_archive_transcode
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
291
diff
changeset
|
5594 |
e1827a4f5d3b
test_archive_transcode
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
291
diff
changeset
|
5595 z = GetArchive(_REMOTE, '/studies/%s/media?transcode=1.2.840.10008.1.2.4.51' % info['ParentStudy']) |
e1827a4f5d3b
test_archive_transcode
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
291
diff
changeset
|
5596 self.assertEqual('1.2.840.10008.1.2.4.51', GetTransferSyntax(z.read('IMAGES/IM0'))) |
e1827a4f5d3b
test_archive_transcode
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
291
diff
changeset
|
5597 |
e1827a4f5d3b
test_archive_transcode
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
291
diff
changeset
|
5598 z = GetArchive(_REMOTE, '/series/%s/media?transcode=1.2.840.10008.1.2.4.57' % info['ParentSeries']) |
e1827a4f5d3b
test_archive_transcode
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
291
diff
changeset
|
5599 self.assertEqual('1.2.840.10008.1.2.4.57', GetTransferSyntax(z.read('IMAGES/IM0'))) |
e1827a4f5d3b
test_archive_transcode
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
291
diff
changeset
|
5600 |
293
032722c3e919
extended test_archive_transcode
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
292
diff
changeset
|
5601 |
032722c3e919
extended test_archive_transcode
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
292
diff
changeset
|
5602 # POST on "/media" |
032722c3e919
extended test_archive_transcode
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
292
diff
changeset
|
5603 self.assertRaises(Exception, lambda: PostArchive( |
032722c3e919
extended test_archive_transcode
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
292
diff
changeset
|
5604 _REMOTE, '/patients/%s/media' % info['ParentPatient'], { 'Transcode' : 'nope' })) |
032722c3e919
extended test_archive_transcode
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
292
diff
changeset
|
5605 |
032722c3e919
extended test_archive_transcode
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
292
diff
changeset
|
5606 z = PostArchive(_REMOTE, '/patients/%s/media' % info['ParentPatient'], { |
032722c3e919
extended test_archive_transcode
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
292
diff
changeset
|
5607 'Transcode' : '1.2.840.10008.1.2.4.50', |
032722c3e919
extended test_archive_transcode
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
292
diff
changeset
|
5608 }) |
032722c3e919
extended test_archive_transcode
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
292
diff
changeset
|
5609 self.assertEqual('1.2.840.10008.1.2.4.50', GetTransferSyntax(z.read('IMAGES/IM0'))) |
032722c3e919
extended test_archive_transcode
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
292
diff
changeset
|
5610 |
032722c3e919
extended test_archive_transcode
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
292
diff
changeset
|
5611 z = PostArchive(_REMOTE, '/studies/%s/media' % info['ParentStudy'], { |
032722c3e919
extended test_archive_transcode
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
292
diff
changeset
|
5612 'Transcode' : '1.2.840.10008.1.2.4.51', |
032722c3e919
extended test_archive_transcode
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
292
diff
changeset
|
5613 }) |
032722c3e919
extended test_archive_transcode
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
292
diff
changeset
|
5614 self.assertEqual('1.2.840.10008.1.2.4.51', GetTransferSyntax(z.read('IMAGES/IM0'))) |
032722c3e919
extended test_archive_transcode
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
292
diff
changeset
|
5615 |
032722c3e919
extended test_archive_transcode
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
292
diff
changeset
|
5616 z = PostArchive(_REMOTE, '/series/%s/media' % info['ParentSeries'], { |
032722c3e919
extended test_archive_transcode
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
292
diff
changeset
|
5617 'Transcode' : '1.2.840.10008.1.2.4.57', |
032722c3e919
extended test_archive_transcode
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
292
diff
changeset
|
5618 }) |
032722c3e919
extended test_archive_transcode
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
292
diff
changeset
|
5619 self.assertEqual('1.2.840.10008.1.2.4.57', GetTransferSyntax(z.read('IMAGES/IM0'))) |
032722c3e919
extended test_archive_transcode
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
292
diff
changeset
|
5620 |
032722c3e919
extended test_archive_transcode
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
292
diff
changeset
|
5621 |
032722c3e919
extended test_archive_transcode
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
292
diff
changeset
|
5622 # GET on "/archive" |
292
e1827a4f5d3b
test_archive_transcode
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
291
diff
changeset
|
5623 z = GetArchive(_REMOTE, '/patients/%s/archive' % info['ParentPatient']) |
e1827a4f5d3b
test_archive_transcode
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
291
diff
changeset
|
5624 self.assertEqual(1, len(z.namelist())) |
e1827a4f5d3b
test_archive_transcode
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
291
diff
changeset
|
5625 self.assertEqual('1.2.840.10008.1.2.1', GetTransferSyntax(z.read(z.namelist()[0]))) |
e1827a4f5d3b
test_archive_transcode
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
291
diff
changeset
|
5626 |
e1827a4f5d3b
test_archive_transcode
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
291
diff
changeset
|
5627 self.assertRaises(Exception, lambda: DoGet(_REMOTE, '/patients/%s/archive?transcode=nope' % info['ParentPatient'])) |
e1827a4f5d3b
test_archive_transcode
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
291
diff
changeset
|
5628 |
e1827a4f5d3b
test_archive_transcode
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
291
diff
changeset
|
5629 z = GetArchive(_REMOTE, '/patients/%s/archive?transcode=1.2.840.10008.1.2' % info['ParentPatient']) |
e1827a4f5d3b
test_archive_transcode
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
291
diff
changeset
|
5630 self.assertEqual('1.2.840.10008.1.2', GetTransferSyntax(z.read(z.namelist()[0]))) |
e1827a4f5d3b
test_archive_transcode
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
291
diff
changeset
|
5631 |
e1827a4f5d3b
test_archive_transcode
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
291
diff
changeset
|
5632 z = GetArchive(_REMOTE, '/studies/%s/archive?transcode=1.2.840.10008.1.2.2' % info['ParentStudy']) |
e1827a4f5d3b
test_archive_transcode
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
291
diff
changeset
|
5633 self.assertEqual('1.2.840.10008.1.2.2', GetTransferSyntax(z.read(z.namelist()[0]))) |
e1827a4f5d3b
test_archive_transcode
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
291
diff
changeset
|
5634 |
e1827a4f5d3b
test_archive_transcode
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
291
diff
changeset
|
5635 z = GetArchive(_REMOTE, '/series/%s/archive?transcode=1.2.840.10008.1.2.4.70' % info['ParentSeries']) |
e1827a4f5d3b
test_archive_transcode
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
291
diff
changeset
|
5636 self.assertEqual('1.2.840.10008.1.2.4.70', GetTransferSyntax(z.read(z.namelist()[0]))) |
293
032722c3e919
extended test_archive_transcode
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
292
diff
changeset
|
5637 |
032722c3e919
extended test_archive_transcode
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
292
diff
changeset
|
5638 |
032722c3e919
extended test_archive_transcode
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
292
diff
changeset
|
5639 # POST on "/archive" |
032722c3e919
extended test_archive_transcode
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
292
diff
changeset
|
5640 self.assertRaises(Exception, lambda: PostArchive( |
032722c3e919
extended test_archive_transcode
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
292
diff
changeset
|
5641 _REMOTE, '/patients/%s/archive' % info['ParentPatient'], { 'Transcode' : 'nope' })) |
032722c3e919
extended test_archive_transcode
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
292
diff
changeset
|
5642 |
032722c3e919
extended test_archive_transcode
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
292
diff
changeset
|
5643 z = PostArchive(_REMOTE, '/patients/%s/archive' % info['ParentPatient'], { |
032722c3e919
extended test_archive_transcode
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
292
diff
changeset
|
5644 'Transcode' : '1.2.840.10008.1.2.4.50', |
032722c3e919
extended test_archive_transcode
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
292
diff
changeset
|
5645 }) |
032722c3e919
extended test_archive_transcode
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
292
diff
changeset
|
5646 self.assertEqual('1.2.840.10008.1.2.4.50', GetTransferSyntax(z.read(z.namelist()[0]))) |
032722c3e919
extended test_archive_transcode
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
292
diff
changeset
|
5647 |
032722c3e919
extended test_archive_transcode
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
292
diff
changeset
|
5648 z = PostArchive(_REMOTE, '/studies/%s/archive' % info['ParentStudy'], { |
032722c3e919
extended test_archive_transcode
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
292
diff
changeset
|
5649 'Transcode' : '1.2.840.10008.1.2.4.51', |
032722c3e919
extended test_archive_transcode
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
292
diff
changeset
|
5650 }) |
032722c3e919
extended test_archive_transcode
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
292
diff
changeset
|
5651 self.assertEqual('1.2.840.10008.1.2.4.51', GetTransferSyntax(z.read(z.namelist()[0]))) |
032722c3e919
extended test_archive_transcode
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
292
diff
changeset
|
5652 |
032722c3e919
extended test_archive_transcode
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
292
diff
changeset
|
5653 z = PostArchive(_REMOTE, '/series/%s/archive' % info['ParentSeries'], { |
032722c3e919
extended test_archive_transcode
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
292
diff
changeset
|
5654 'Transcode' : '1.2.840.10008.1.2.4.57', |
032722c3e919
extended test_archive_transcode
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
292
diff
changeset
|
5655 }) |
032722c3e919
extended test_archive_transcode
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
292
diff
changeset
|
5656 self.assertEqual('1.2.840.10008.1.2.4.57', GetTransferSyntax(z.read(z.namelist()[0]))) |
292
e1827a4f5d3b
test_archive_transcode
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
291
diff
changeset
|
5657 |
293
032722c3e919
extended test_archive_transcode
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
292
diff
changeset
|
5658 |
032722c3e919
extended test_archive_transcode
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
292
diff
changeset
|
5659 # "/tools/create-*" |
032722c3e919
extended test_archive_transcode
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
292
diff
changeset
|
5660 z = PostArchive(_REMOTE, '/tools/create-archive', { |
032722c3e919
extended test_archive_transcode
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
292
diff
changeset
|
5661 'Resources' : [ info['ParentStudy'] ], |
032722c3e919
extended test_archive_transcode
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
292
diff
changeset
|
5662 'Transcode' : '1.2.840.10008.1.2.4.50', |
032722c3e919
extended test_archive_transcode
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
292
diff
changeset
|
5663 }) |
032722c3e919
extended test_archive_transcode
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
292
diff
changeset
|
5664 self.assertEqual(1, len(z.namelist())) |
032722c3e919
extended test_archive_transcode
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
292
diff
changeset
|
5665 self.assertEqual('1.2.840.10008.1.2.4.50', GetTransferSyntax(z.read(z.namelist()[0]))) |
032722c3e919
extended test_archive_transcode
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
292
diff
changeset
|
5666 |
032722c3e919
extended test_archive_transcode
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
292
diff
changeset
|
5667 z = PostArchive(_REMOTE, '/tools/create-media', { |
032722c3e919
extended test_archive_transcode
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
292
diff
changeset
|
5668 'Resources' : [ info['ParentStudy'] ], |
032722c3e919
extended test_archive_transcode
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
292
diff
changeset
|
5669 'Transcode' : '1.2.840.10008.1.2.4.51', |
032722c3e919
extended test_archive_transcode
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
292
diff
changeset
|
5670 }) |
032722c3e919
extended test_archive_transcode
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
292
diff
changeset
|
5671 self.assertEqual(2, len(z.namelist())) |
032722c3e919
extended test_archive_transcode
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
292
diff
changeset
|
5672 self.assertEqual('1.2.840.10008.1.2.4.51', GetTransferSyntax(z.read('IMAGES/IM0'))) |
032722c3e919
extended test_archive_transcode
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
292
diff
changeset
|
5673 |
032722c3e919
extended test_archive_transcode
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
292
diff
changeset
|
5674 z = PostArchive(_REMOTE, '/tools/create-media-extended', { |
032722c3e919
extended test_archive_transcode
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
292
diff
changeset
|
5675 'Resources' : [ info['ParentStudy'] ], |
032722c3e919
extended test_archive_transcode
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
292
diff
changeset
|
5676 'Transcode' : '1.2.840.10008.1.2.4.57', |
032722c3e919
extended test_archive_transcode
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
292
diff
changeset
|
5677 }) |
032722c3e919
extended test_archive_transcode
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
292
diff
changeset
|
5678 self.assertEqual(2, len(z.namelist())) |
032722c3e919
extended test_archive_transcode
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
292
diff
changeset
|
5679 self.assertEqual('1.2.840.10008.1.2.4.57', GetTransferSyntax(z.read('IMAGES/IM0'))) |
032722c3e919
extended test_archive_transcode
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
292
diff
changeset
|
5680 |
308 | 5681 |
301
6652d5720a45
test_modify_keep_source
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
300
diff
changeset
|
5682 def test_modify_keep_source(self): |
6652d5720a45
test_modify_keep_source
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
300
diff
changeset
|
5683 # https://groups.google.com/d/msg/orthanc-users/CgU-Wg8vDio/BY5ZWcDEAgAJ |
6652d5720a45
test_modify_keep_source
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
300
diff
changeset
|
5684 i = UploadInstance(_REMOTE, 'DummyCT.dcm') |
6652d5720a45
test_modify_keep_source
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
300
diff
changeset
|
5685 self.assertEqual(1, len(DoGet(_REMOTE, '/studies'))) |
6652d5720a45
test_modify_keep_source
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
300
diff
changeset
|
5686 |
6652d5720a45
test_modify_keep_source
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
300
diff
changeset
|
5687 j = DoPost(_REMOTE, '/studies/%s/modify' % i['ParentStudy'], { |
6652d5720a45
test_modify_keep_source
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
300
diff
changeset
|
5688 'Replace' : { |
6652d5720a45
test_modify_keep_source
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
300
diff
changeset
|
5689 'StationName' : 'TEST', |
6652d5720a45
test_modify_keep_source
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
300
diff
changeset
|
5690 }, |
6652d5720a45
test_modify_keep_source
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
300
diff
changeset
|
5691 'KeepSource' : True, |
6652d5720a45
test_modify_keep_source
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
300
diff
changeset
|
5692 }) |
6652d5720a45
test_modify_keep_source
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
300
diff
changeset
|
5693 |
6652d5720a45
test_modify_keep_source
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
300
diff
changeset
|
5694 s = DoGet(_REMOTE, '/studies') |
6652d5720a45
test_modify_keep_source
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
300
diff
changeset
|
5695 self.assertEqual(2, len(s)) |
6652d5720a45
test_modify_keep_source
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
300
diff
changeset
|
5696 self.assertTrue(i['ParentStudy'] in s) |
6652d5720a45
test_modify_keep_source
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
300
diff
changeset
|
5697 self.assertTrue(j['ID'] in s) |
6652d5720a45
test_modify_keep_source
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
300
diff
changeset
|
5698 |
6652d5720a45
test_modify_keep_source
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
300
diff
changeset
|
5699 DoDelete(_REMOTE, '/studies/%s' % j['ID']) |
6652d5720a45
test_modify_keep_source
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
300
diff
changeset
|
5700 self.assertEqual(1, len(DoGet(_REMOTE, '/studies'))) |
6652d5720a45
test_modify_keep_source
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
300
diff
changeset
|
5701 |
6652d5720a45
test_modify_keep_source
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
300
diff
changeset
|
5702 j = DoPost(_REMOTE, '/studies/%s/modify' % i['ParentStudy'], { |
6652d5720a45
test_modify_keep_source
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
300
diff
changeset
|
5703 'Replace' : { |
6652d5720a45
test_modify_keep_source
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
300
diff
changeset
|
5704 'StationName' : 'TEST', |
6652d5720a45
test_modify_keep_source
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
300
diff
changeset
|
5705 }, |
6652d5720a45
test_modify_keep_source
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
300
diff
changeset
|
5706 'KeepSource' : False, |
6652d5720a45
test_modify_keep_source
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
300
diff
changeset
|
5707 }) |
6652d5720a45
test_modify_keep_source
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
300
diff
changeset
|
5708 |
6652d5720a45
test_modify_keep_source
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
300
diff
changeset
|
5709 s = DoGet(_REMOTE, '/studies') |
6652d5720a45
test_modify_keep_source
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
300
diff
changeset
|
5710 self.assertEqual(1, len(s)) |
6652d5720a45
test_modify_keep_source
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
300
diff
changeset
|
5711 self.assertFalse(i['ParentStudy'] in s) |
6652d5720a45
test_modify_keep_source
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
300
diff
changeset
|
5712 self.assertTrue(j['ID'] in s) |
302
22b6dd0f8c84
test_modify_transcode_study
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
301
diff
changeset
|
5713 |
22b6dd0f8c84
test_modify_transcode_study
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
301
diff
changeset
|
5714 |
22b6dd0f8c84
test_modify_transcode_study
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
301
diff
changeset
|
5715 def test_modify_transcode_study(self): |
22b6dd0f8c84
test_modify_transcode_study
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
301
diff
changeset
|
5716 i = UploadInstance(_REMOTE, 'KarstenHilbertRF.dcm') |
22b6dd0f8c84
test_modify_transcode_study
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
301
diff
changeset
|
5717 self.assertEqual('1.2.840.10008.1.2.1', GetTransferSyntax( |
22b6dd0f8c84
test_modify_transcode_study
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
301
diff
changeset
|
5718 DoGet(_REMOTE, '/instances/%s/file' % i['ID']))) |
22b6dd0f8c84
test_modify_transcode_study
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
301
diff
changeset
|
5719 |
22b6dd0f8c84
test_modify_transcode_study
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
301
diff
changeset
|
5720 self.assertEqual(1, len(DoGet(_REMOTE, '/instances'))) |
22b6dd0f8c84
test_modify_transcode_study
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
301
diff
changeset
|
5721 j = DoPost(_REMOTE, '/studies/%s/modify' % i['ParentStudy'], { |
22b6dd0f8c84
test_modify_transcode_study
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
301
diff
changeset
|
5722 'Transcode' : '1.2.840.10008.1.2.4.50', |
22b6dd0f8c84
test_modify_transcode_study
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
301
diff
changeset
|
5723 'KeepSource' : False |
22b6dd0f8c84
test_modify_transcode_study
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
301
diff
changeset
|
5724 }) |
22b6dd0f8c84
test_modify_transcode_study
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
301
diff
changeset
|
5725 |
22b6dd0f8c84
test_modify_transcode_study
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
301
diff
changeset
|
5726 k = DoGet(_REMOTE, '/instances') |
22b6dd0f8c84
test_modify_transcode_study
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
301
diff
changeset
|
5727 self.assertEqual(1, len(k)) |
22b6dd0f8c84
test_modify_transcode_study
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
301
diff
changeset
|
5728 self.assertEqual(i['ID'], DoGet(_REMOTE, '/instances/%s/metadata?expand' % k[0]) ['ModifiedFrom']) |
22b6dd0f8c84
test_modify_transcode_study
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
301
diff
changeset
|
5729 self.assertEqual('1.2.840.10008.1.2.4.50', GetTransferSyntax( |
22b6dd0f8c84
test_modify_transcode_study
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
301
diff
changeset
|
5730 DoGet(_REMOTE, '/instances/%s/file' % k[0]))) |
22b6dd0f8c84
test_modify_transcode_study
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
301
diff
changeset
|
5731 |
305
ed20ead1a8b6
test_store_peer_transcoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
304
diff
changeset
|
5732 |
ed20ead1a8b6
test_store_peer_transcoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
304
diff
changeset
|
5733 def test_store_peer_transcoding(self): |
ed20ead1a8b6
test_store_peer_transcoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
304
diff
changeset
|
5734 i = UploadInstance(_REMOTE, 'KarstenHilbertRF.dcm')['ID'] |
ed20ead1a8b6
test_store_peer_transcoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
304
diff
changeset
|
5735 |
ed20ead1a8b6
test_store_peer_transcoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
304
diff
changeset
|
5736 SYNTAXES = [ |
ed20ead1a8b6
test_store_peer_transcoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
304
diff
changeset
|
5737 '1.2.840.10008.1.2', |
ed20ead1a8b6
test_store_peer_transcoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
304
diff
changeset
|
5738 '1.2.840.10008.1.2.1', |
ed20ead1a8b6
test_store_peer_transcoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
304
diff
changeset
|
5739 #'1.2.840.10008.1.2.1.99', # Deflated Explicit VR Little Endian (cannot be decoded in debug mode if Orthanc is statically linked against DCMTK 3.6.5) |
ed20ead1a8b6
test_store_peer_transcoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
304
diff
changeset
|
5740 '1.2.840.10008.1.2.2', |
ed20ead1a8b6
test_store_peer_transcoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
304
diff
changeset
|
5741 '1.2.840.10008.1.2.4.50', |
ed20ead1a8b6
test_store_peer_transcoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
304
diff
changeset
|
5742 '1.2.840.10008.1.2.4.51', |
ed20ead1a8b6
test_store_peer_transcoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
304
diff
changeset
|
5743 '1.2.840.10008.1.2.4.57', |
ed20ead1a8b6
test_store_peer_transcoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
304
diff
changeset
|
5744 '1.2.840.10008.1.2.4.70', |
ed20ead1a8b6
test_store_peer_transcoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
304
diff
changeset
|
5745 ] |
ed20ead1a8b6
test_store_peer_transcoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
304
diff
changeset
|
5746 |
ed20ead1a8b6
test_store_peer_transcoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
304
diff
changeset
|
5747 if HasGdcmPlugin(_REMOTE): |
ed20ead1a8b6
test_store_peer_transcoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
304
diff
changeset
|
5748 SYNTAXES = SYNTAXES + [ |
ed20ead1a8b6
test_store_peer_transcoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
304
diff
changeset
|
5749 '1.2.840.10008.1.2.4.80', # This makes DCMTK 3.6.2 crash |
ed20ead1a8b6
test_store_peer_transcoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
304
diff
changeset
|
5750 '1.2.840.10008.1.2.4.81', # This makes DCMTK 3.6.2 crash |
ed20ead1a8b6
test_store_peer_transcoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
304
diff
changeset
|
5751 '1.2.840.10008.1.2.4.90', # JPEG2k, unavailable without GDCM |
ed20ead1a8b6
test_store_peer_transcoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
304
diff
changeset
|
5752 '1.2.840.10008.1.2.4.91', # JPEG2k, unavailable without GDCM |
ed20ead1a8b6
test_store_peer_transcoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
304
diff
changeset
|
5753 ] |
ed20ead1a8b6
test_store_peer_transcoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
304
diff
changeset
|
5754 |
ed20ead1a8b6
test_store_peer_transcoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
304
diff
changeset
|
5755 for syntax in SYNTAXES: |
ed20ead1a8b6
test_store_peer_transcoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
304
diff
changeset
|
5756 body = { |
ed20ead1a8b6
test_store_peer_transcoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
304
diff
changeset
|
5757 'Resources' : [ i ], |
ed20ead1a8b6
test_store_peer_transcoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
304
diff
changeset
|
5758 } |
ed20ead1a8b6
test_store_peer_transcoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
304
diff
changeset
|
5759 |
ed20ead1a8b6
test_store_peer_transcoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
304
diff
changeset
|
5760 if syntax != '1.2.840.10008.1.2.1': |
ed20ead1a8b6
test_store_peer_transcoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
304
diff
changeset
|
5761 body['Transcode'] = syntax |
ed20ead1a8b6
test_store_peer_transcoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
304
diff
changeset
|
5762 |
ed20ead1a8b6
test_store_peer_transcoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
304
diff
changeset
|
5763 self.assertEqual(0, len(DoGet(_LOCAL, '/instances'))) |
ed20ead1a8b6
test_store_peer_transcoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
304
diff
changeset
|
5764 self.assertEqual(1, len(DoGet(_REMOTE, '/instances'))) |
ed20ead1a8b6
test_store_peer_transcoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
304
diff
changeset
|
5765 DoPost(_REMOTE, '/peers/peer/store', body, 'text/plain') |
ed20ead1a8b6
test_store_peer_transcoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
304
diff
changeset
|
5766 self.assertEqual(1, len(DoGet(_LOCAL, '/instances'))) |
ed20ead1a8b6
test_store_peer_transcoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
304
diff
changeset
|
5767 self.assertEqual(1, len(DoGet(_REMOTE, '/instances'))) |
ed20ead1a8b6
test_store_peer_transcoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
304
diff
changeset
|
5768 self.assertEqual(syntax, GetTransferSyntax( |
ed20ead1a8b6
test_store_peer_transcoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
304
diff
changeset
|
5769 DoGet(_LOCAL, '/instances/%s/file' % DoGet(_LOCAL, '/instances') [0]))) |
ed20ead1a8b6
test_store_peer_transcoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
304
diff
changeset
|
5770 |
ed20ead1a8b6
test_store_peer_transcoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
304
diff
changeset
|
5771 DropOrthanc(_LOCAL) |
308 | 5772 |
5773 | |
295 | 5774 def test_getscu(self): |
307 | 5775 def CleanTarget(): |
5776 if os.path.isdir('/tmp/GETSCU'): | |
5777 shutil.rmtree('/tmp/GETSCU') | |
5778 os.makedirs('/tmp/GETSCU') | |
5779 | |
306
da2be3ff2db5
fix getscu binaries
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
296
diff
changeset
|
5780 env = {} |
da2be3ff2db5
fix getscu binaries
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
296
diff
changeset
|
5781 if _DOCKER: |
da2be3ff2db5
fix getscu binaries
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
296
diff
changeset
|
5782 # This is "getscu" from DCMTK 3.6.5 compiled using LSB, |
da2be3ff2db5
fix getscu binaries
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
296
diff
changeset
|
5783 # and running in a GNU/Linux distribution running DCMTK |
da2be3ff2db5
fix getscu binaries
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
296
diff
changeset
|
5784 # 3.6.0. Tell "getscu" where it can find the DICOM dictionary. |
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5785 env['DCMDICTPATH'] = '/usr/share/libdcmtk2/dicom.dic' |
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5786 |
295 | 5787 # no transcoding required |
307 | 5788 UploadInstance(_REMOTE, 'Brainix/Flair/IM-0001-0001.dcm')['ID'] |
5789 | |
5790 CleanTarget() | |
295 | 5791 |
306
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5792 subprocess.check_call([ |
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5793 FindExecutable('getscu'), |
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5794 _REMOTE['Server'], |
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5795 str(_REMOTE['DicomPort']), |
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5796 '-aec', 'ORTHANC', |
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5797 '-aet', 'ORTHANCTEST', # pretend to be the other orthanc |
307 | 5798 '-k', '0020,000d=2.16.840.1.113669.632.20.1211.10000357775', |
306
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5799 '-k', '0008,0052=STUDY', |
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5800 '--output-directory', '/tmp/GETSCU/' |
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5801 ], env = env) |
295 | 5802 |
311 | 5803 f1 = '/tmp/GETSCU/MR.1.3.46.670589.11.0.0.11.4.2.0.8743.5.5396.2006120114314079549' |
5804 self.assertTrue(os.path.isfile(f1)) | |
5805 with open(f1, 'rb') as f: | |
5806 self.assertEqual('1.2.840.10008.1.2.1', GetTransferSyntax(f.read())) | |
5807 | |
307 | 5808 CleanTarget() |
295 | 5809 |
5810 # transcoding required | |
311 | 5811 UploadInstance(_REMOTE, 'TransferSyntaxes/1.2.840.10008.1.2.4.50.dcm') |
307 | 5812 |
5813 subprocess.check_call([ | |
5814 FindExecutable('getscu'), | |
5815 _REMOTE['Server'], | |
5816 str(_REMOTE['DicomPort']), | |
5817 '-aec', 'ORTHANC', | |
5818 '-aet', 'ORTHANCTEST', # pretend to be the other orthanc | |
311 | 5819 '-k', '0020,000d=2.16.840.1.113669.632.20.1211.10000357775\\1.2.840.113663.1298.6234813.1.298.20000329.1115122', |
307 | 5820 '-k', '0008,0052=STUDY', |
5821 '--output-directory', '/tmp/GETSCU/' | |
5822 ], env = env) | |
5823 | |
311 | 5824 self.assertTrue(os.path.isfile(f1)) |
5825 with open(f1, 'rb') as f: | |
5826 self.assertEqual('1.2.840.10008.1.2.1', GetTransferSyntax(f.read())) | |
5827 | |
5828 # This file is transcoded from "1.2.840.10008.1.2.4.50" to "1.2.840.10008.1.2.1" | |
5829 # (LittleEndianExplicit is proposed by default by "getscu") | |
5830 f2 = '/tmp/GETSCU/US.1.2.840.113663.1298.1.3.715.20000329.1115326' | |
5831 self.assertTrue(os.path.isfile(f2)) | |
5832 with open(f2, 'rb') as f: | |
5833 self.assertEqual('1.2.840.10008.1.2.1', GetTransferSyntax(f.read())) | |
324
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5834 |
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5835 |
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5836 def test_findscu_truncation(self): |
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5837 # https://groups.google.com/forum/#!msg/orthanc-users/FkckWAHvso8/UbRBAhQ5CwAJ |
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5838 # Fixed by: https://hg.orthanc-server.com/orthanc/rev/2724977419fb |
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5839 UploadInstance(_REMOTE, 'Multiframe.dcm') |
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5840 UploadInstance(_REMOTE, 'ColorTestImageJ.dcm') |
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5841 |
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5842 study = '1.3.46.670589.7.5.8.80001255161.20000323.151537.1' |
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5843 |
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5844 i = CallFindScu([ '-k', '0008,0052=STUDY', '-k', 'StudyInstanceUID' ]) |
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5845 result = re.findall('\(0020,000d\).*?\[(.*?)\]', i) |
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5846 self.assertEqual(2, len(result)) |
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5847 |
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5848 # The "StudyInstanceUID" is set as a list of 5 times the same |
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5849 # study, leading to a string of 249 characters |
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5850 i = CallFindScu([ '-k', '0008,0052=STUDY', '-k', |
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5851 'StudyInstanceUID=%s\\%s\\%s\\%s\\%s' % (( study, ) * 5) ]) |
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5852 result = re.findall('\(0020,000d\).*?\[(.*?)\]', i) |
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5853 self.assertEqual(1, len(result)) |
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5854 |
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5855 # The "StudyInstanceUID" is set as a list of 6 times the same |
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5856 # study, leading to a string of 299 characters. In Orthanc <= |
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5857 # 1.7.2, this is above the value of ORTHANC_MAXIMUM_TAG_LENGTH |
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5858 # == 256, and is thus wiped out by C-FIND SCP. As a |
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5859 # consequence, Orthanc <= 1.7.2 doesn't apply the filter on |
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5860 # "StudyInstanceUID" and returns all the available |
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5861 # studies (i.e. 2). This issue was fixed in Orthanc 1.7.3. |
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5862 i = CallFindScu([ '-k', '0008,0052=STUDY', '-k', |
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5863 'StudyInstanceUID=%s\\%s\\%s\\%s\\%s\\%s' % (( study, ) * 6) ]) |
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5864 result = re.findall('\(0020,000d\).*?\[(.*?)\]', i) |
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5865 self.assertEqual(1, len(result)) |
328
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5866 |
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|
5867 |
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5868 def test_store_compressed(self): |
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5869 with open(GetDatabasePath('DummyCT.dcm'), 'rb') as f: |
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5870 dicom = f.read() |
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5871 i = DoPost(_REMOTE, '/instances', dicom) ['ID'] |
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5872 sourceSize = len(dicom) |
324
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5873 |
328
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5874 self.assertEqual(0, len(DoGet(_LOCAL, '/instances'))) |
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5875 self.assertEqual(1, len(DoGet(_REMOTE, '/instances'))) |
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|
5876 |
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5877 # Sending to the local Orthanc 0.8.6 server, without compression: OK |
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5878 jobId = MonitorJob2(_REMOTE, lambda: DoPost( |
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5879 _REMOTE, '/peers/peer/store', { |
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5880 'Resources' : [ i ], |
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5881 'Synchronous' : False, |
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|
5882 })) |
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changeset
|
5883 |
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5884 job = DoGet(_REMOTE, '/jobs/%s' % jobId) |
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5885 self.assertFalse(job['Content']['Compress']) |
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5886 self.assertEqual('', job['Content']['Peer'][2]) # Password must not be reported |
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5887 self.assertEqual(str(sourceSize), job['Content']['Size']) |
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|
5888 |
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5889 self.assertEqual(1, len(DoGet(_LOCAL, '/instances'))) |
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5890 DropOrthanc(_LOCAL) |
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5891 |
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5892 # Sending to the local Orthanc 0.8.6 server, with compression: |
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5893 # Not supported by Orthanc 0.8.6 => failure |
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5894 self.assertRaises(Exception, lambda: DoPost(_REMOTE, '/peers/peer/store', { |
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5895 'Resources' : [ i ], |
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5896 'Compress' : True, |
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5897 })) |
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5898 self.assertEqual(0, len(DoGet(_LOCAL, '/instances'))) |
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|
5899 |
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5900 # Sending to the tested remote server, with compression: OK |
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5901 jobId = MonitorJob2(_REMOTE, lambda: DoPost( |
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5902 _REMOTE, '/peers/self/store', { |
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5903 'Resources' : [ i ], |
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5904 'Compress' : True, |
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5905 'Synchronous' : False, |
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5906 })) |
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|
5907 |
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5908 job = DoGet(_REMOTE, '/jobs/%s' % jobId) |
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5909 self.assertTrue(job['Content']['Compress']) |
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5910 |
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5911 # Compression must have divided the size of the sent data at least twice |
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5912 self.assertLess(int(job['Content']['Size']), sourceSize / 2) |
332 | 5913 |
5914 | |
5915 def test_move_ambra(self): | |
5916 # "Orthanc + Ambra: Query/Retrieve" (2020-08-25) | |
5917 # https://groups.google.com/g/orthanc-users/c/yIUnZ9v9-Zs/m/GQPXiAOiCQAJ | |
5918 | |
5919 UploadInstance(_REMOTE, '2019-06-17-VedranZdesic.dcm') | |
5920 | |
5921 self.assertFalse(MonitorJob(_REMOTE, lambda: CallMoveScu([ | |
5922 '--study', | |
5923 '-k', 'StudyInstanceUID=' | |
5924 ]))) | |
5925 | |
5926 self.assertFalse(MonitorJob(_REMOTE, lambda: CallMoveScu([ | |
5927 '--study', | |
5928 '-k', 'AccessionNumber=', | |
5929 ]))) | |
5930 | |
5931 self.assertFalse(MonitorJob(_REMOTE, lambda: CallMoveScu([ | |
5932 '--study', | |
5933 '-k', 'AccessionNumber=', | |
5934 '-k', 'StudyInstanceUID=' | |
5935 ]))) | |
5936 | |
5937 self.assertEqual(0, len(DoGet(_LOCAL, '/instances'))) | |
5938 self.assertTrue(MonitorJob(_REMOTE, lambda: CallMoveScu([ | |
5939 '--study', | |
5940 '-k', 'AccessionNumber=CT16000988', | |
5941 '-k', 'StudyInstanceUID=', | |
5942 ]))) | |
5943 self.assertEqual(1, len(DoGet(_LOCAL, '/instances'))) | |
5944 DropOrthanc(_LOCAL) | |
5945 | |
5946 self.assertEqual(0, len(DoGet(_LOCAL, '/instances'))) | |
5947 self.assertTrue(MonitorJob(_REMOTE, lambda: CallMoveScu([ | |
5948 '--study', | |
5949 '-k', 'AccessionNumber=CT16000988', | |
5950 '-k', 'StudyInstanceUID=1.2.840.113619.2.278.3.4194965761.659.1468842739.39', | |
5951 ]))) | |
5952 self.assertEqual(1, len(DoGet(_LOCAL, '/instances'))) | |
5953 DropOrthanc(_LOCAL) | |
5954 | |
5955 # This fails on Orthanc <= 1.7.3 | |
5956 self.assertEqual(0, len(DoGet(_LOCAL, '/instances'))) | |
5957 self.assertTrue(MonitorJob(_REMOTE, lambda: CallMoveScu([ | |
5958 '--study', | |
5959 '-k', 'AccessionNumber=', | |
5960 '-k', 'StudyInstanceUID=1.2.840.113619.2.278.3.4194965761.659.1468842739.39' | |
5961 ]))) | |
5962 self.assertEqual(1, len(DoGet(_LOCAL, '/instances'))) | |
5963 DropOrthanc(_LOCAL) | |
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5964 |
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5965 |
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5966 def test_decode_elscint(self): |
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5967 # https://groups.google.com/g/orthanc-users/c/d9anAx6lSis/m/qEzm1x3PAAAJ |
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5968 a = UploadInstance(_REMOTE, '2020-09-12-ELSCINT1-PMSCT_RLE1.dcm')['ID'] |
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5969 b = UploadInstance(_REMOTE, '2020-09-11-Christopher-ELSCINT1-Raw.dcm')['ID'] |
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5970 |
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5971 im = GetImage(_REMOTE, '/instances/%s/frames/0/preview' % a) |
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5972 self.assertEqual("L", im.mode) |
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5973 self.assertEqual(512, im.size[0]) |
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5974 self.assertEqual(512, im.size[1]) |
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5975 |
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5976 im = GetImage(_REMOTE, '/instances/%s/frames/0/preview' % b) |
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5977 self.assertEqual("L", im.mode) |
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5978 self.assertEqual(512, im.size[0]) |
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5979 self.assertEqual(512, im.size[1]) |
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5980 |
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5981 # The two tests below fail on Orthanc <= 1.7.3 |
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5982 raw = DoGet(_REMOTE, '/instances/%s/frames/0/raw' % a) |
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5983 self.assertEqual(512 * 512 * 2, len(raw)) |
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5984 |
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5985 raw = DoGet(_REMOTE, '/instances/%s/frames/0/raw' % b) |
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5986 self.assertEqual(512 * 512 * 2, len(raw)) |
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5987 |
334
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5988 |
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5989 def test_rest_modalities_in_study_2(self): |
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5990 # Problem reported by Alain Mazy on 2020-09-15 |
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5991 UploadInstance(_REMOTE, 'Comunix/Ct/IM-0001-0001.dcm') |
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5992 UploadInstance(_REMOTE, 'Comunix/Pet/IM-0001-0001.dcm') |
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5993 |
335
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5994 i = CallFindScu([ '-k', '0008,0052=STUDY', '-k', '0020,000d=', '-k', '0008,0061=' ]) |
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5995 modalitiesInStudy = re.findall('\(0008,0061\).*?\[(.*?)\]', i) |
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5996 self.assertEqual(1, len(modalitiesInStudy)) |
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5997 self.assertEqual('CT\\PT ', modalitiesInStudy[0]) |
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5998 |
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5999 for i in [ '', 'CT', 'PT', 'UX', 'UX\\MR', 'CT\\PT', 'UX\\PT', 'CT\\PT', 'UX\\CT\\PT' ]: |
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6000 # The empty string '' corresponds to universal matching. |
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6001 # The case where "i == 'CT'" failed in Orthanc <= 1.7.3. |
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6002 |
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6003 if i in [ 'UX', 'UX\\MR' ]: |
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6004 expected = 0 |
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6005 else: |
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6006 expected = 1 |
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6007 |
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6008 a = DoPost(_REMOTE, '/tools/find', { 'Level' : 'Study', |
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6009 'Query' : { 'ModalitiesInStudy' : i }}) |
335
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6010 self.assertEqual(expected, len(a)) |
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6011 |
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6012 i = CallFindScu([ '-k', '0008,0052=STUDY', '-k', '0020,000d=', '-k', '0008,0061=%s' % i ]) |
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6013 studyInstanceUid = re.findall('\(0020,000d\).*?\[(.*?)\]', i) |
335
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6014 self.assertEqual(expected, len(studyInstanceUid)) |
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6015 |
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6016 |
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6017 def test_webdav(self): |
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6018 self.assertRaises(Exception, lambda: DoPropFind(_REMOTE, '/webdav/', 2)) |
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6019 |
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6020 xml = DoPropFind(_REMOTE, '/webdav/', 1) |
341
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6021 pprint.pprint(xml.keys()) |
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6022 print(xml['/webdav/'].toprettyxml()) |
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6023 |
337
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6024 #print(xml.toprettyxml()) |
341
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6025 #for i in xml.getElementsByTagName('D:response'): |
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6026 # print(i.getElementsByTagName('D:href')[0].childNodes[0].data) |
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6027 # print(i.getElementsByTagName('D:prop')[0].toprettyxml()) |
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6028 |
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|
6029 |
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|
6030 |
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6031 self.assertEqual(0, len(DoGet(_REMOTE, '/patients'))) |
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6032 UploadInstance(_REMOTE, 'Comunix/Ct/IM-0001-0001.dcm') |