Mercurial > hg > orthanc-tests
annotate Tests/Tests.py @ 377:cc79fa4945da
test_pixel_data_offset
| author | Sebastien Jodogne <s.jodogne@gmail.com> |
|---|---|
| date | Thu, 04 Feb 2021 15:31:11 +0100 |
| parents | 78bef07c4118 |
| children | a4b8450a1158 |
| rev | line source |
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| 22 | 1 #!/usr/bin/env python |
| 2 # -*- coding: utf-8 -*- | |
| 3 | |
| 4 | |
| 3 | 5 # Orthanc - A Lightweight, RESTful DICOM Store |
| 73 | 6 # Copyright (C) 2012-2016 Sebastien Jodogne, Medical Physics |
| 3 | 7 # Department, University Hospital of Liege, Belgium |
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8 # Copyright (C) 2017-2021 Osimis S.A., Belgium |
| 3 | 9 # |
| 10 # This program is free software: you can redistribute it and/or | |
| 11 # modify it under the terms of the GNU General Public License as | |
| 12 # published by the Free Software Foundation, either version 3 of the | |
| 13 # License, or (at your option) any later version. | |
| 14 # | |
| 15 # This program is distributed in the hope that it will be useful, but | |
| 16 # WITHOUT ANY WARRANTY; without even the implied warranty of | |
| 17 # MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU | |
| 18 # General Public License for more details. | |
| 19 # | |
| 20 # You should have received a copy of the GNU General Public License | |
| 21 # along with this program. If not, see <http://www.gnu.org/licenses/>. | |
| 22 | |
| 23 | |
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24 import base64 |
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25 import bz2 |
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26 import copy |
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27 import pprint |
| 14 | 28 import tempfile |
| 3 | 29 import unittest |
| 295 | 30 import shutil |
| 3 | 31 |
| 11 | 32 from PIL import ImageChops |
| 3 | 33 from Toolbox import * |
| 13 | 34 from xml.dom import minidom |
| 312 | 35 from datetime import datetime |
| 3 | 36 |
| 37 _LOCAL = None | |
| 38 _REMOTE = None | |
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39 _DOCKER = False |
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40 |
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41 |
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42 def SetOrthancParameters(local, remote, withinDocker): |
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43 global _LOCAL, _REMOTE, _DOCKER |
| 3 | 44 _LOCAL = local |
| 45 _REMOTE = remote | |
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46 _DOCKER = withinDocker |
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47 |
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48 |
| 14 | 49 def ExtractDicomTags(rawDicom, tags): |
| 50 with tempfile.NamedTemporaryFile(delete = True) as f: | |
| 51 f.write(rawDicom) | |
| 52 f.flush() | |
| 45 | 53 data = subprocess.check_output([ FindExecutable('dcm2xml'), f.name ]) |
| 14 | 54 |
| 55 result = [] | |
| 56 for tag in tags: | |
| 57 match = re.search('<element[^>]+name="%s">([^>]*)</element>' % tag, data) | |
| 58 if match == None: | |
| 59 result.append('') | |
| 60 else: | |
| 61 result.append(match.group(1)) | |
| 62 | |
| 63 return result | |
| 64 | |
| 65 | |
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66 def CompareLists(a, b): |
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67 if len(a) != len(b): |
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68 return False |
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69 |
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70 for i in range(len(a)): |
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71 d = a[i] - b[i] |
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72 if abs(d) >= 0.51: # Add some tolerance for rounding errors |
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73 return False |
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74 |
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75 return True |
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76 |
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77 |
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78 def CompareTags(a, b, tagsToIgnore): |
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79 for i in tagsToIgnore: |
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80 if i in a: |
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81 del a[i] |
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82 if i in b: |
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83 del b[i] |
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84 |
| 123 | 85 if a.keys() == b.keys(): |
| 86 return True | |
| 87 else: | |
| 88 print('Mismatch in tags: %s' % str(set(a.keys()) ^ set(b.keys()))) | |
| 89 return False | |
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90 |
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91 |
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92 def CallFindScu(args): |
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93 p = subprocess.Popen([ FindExecutable('findscu'), |
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94 '-P', '-aec', _REMOTE['DicomAet'], '-aet', _LOCAL['DicomAet'], |
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95 _REMOTE['Server'], str(_REMOTE['DicomPort']) ] + args, |
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96 stderr=subprocess.PIPE) |
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97 return p.communicate()[1] |
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98 |
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99 |
| 142 | 100 def GetMoveScuCommand(): |
| 101 return [ | |
| 102 FindExecutable('movescu'), | |
| 103 '--move', _LOCAL['DicomAet'], # Target AET (i.e. storescp) | |
| 104 '--call', _REMOTE['DicomAet'], # Called AET (i.e. Orthanc) | |
| 105 '--aetitle', _LOCAL['DicomAet'], # Calling AET (i.e. storescp) | |
| 106 _REMOTE['Server'], | |
| 107 str(_REMOTE['DicomPort']) | |
| 108 ] | |
| 109 | |
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110 |
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111 def CallMoveScu(args): |
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112 try: |
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113 subprocess.check_call(GetMoveScuCommand() + args, |
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114 stderr = subprocess.PIPE) |
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115 except subprocess.CalledProcessError as e: |
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116 # The error code "69" corresponds to "EXITCODE_CMOVE_ERROR", |
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117 # that has been introduced in DCMTK 3.6.2. This error code is |
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118 # expected by some tests that try and C-MOVE non-existing |
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119 # DICOM instances. |
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120 # https://groups.google.com/d/msg/orthanc-users/DCRc5NeSCbM/DG-pSWj-BwAJ |
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121 if e.returncode != 69: |
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122 raise e |
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123 |
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124 |
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125 def GenerateTestSequence(): |
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126 return [ |
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127 { |
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128 'StudyDescription': 'Hello^', |
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129 'ReferencedStudySequence' : [ |
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130 { |
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131 'StudyDescription': 'Toto', |
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132 }, |
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133 { |
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134 'StudyDescription': 'Tata', |
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135 }, |
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136 ] |
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137 }, |
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138 { |
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139 'StudyDescription': 'Sébastien^', |
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140 'StudyDate' : '19700202', |
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141 } |
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142 ] |
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143 |
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144 |
| 3 | 145 class Orthanc(unittest.TestCase): |
| 146 def setUp(self): | |
| 83 | 147 if (sys.version_info >= (3, 0)): |
| 148 # Remove annoying warnings about unclosed socket in Python 3 | |
| 149 import warnings | |
| 150 warnings.simplefilter("ignore", ResourceWarning) | |
| 151 | |
| 3 | 152 DropOrthanc(_LOCAL) |
| 153 DropOrthanc(_REMOTE) | |
| 174 | 154 UninstallLuaCallbacks(_REMOTE) |
| 312 | 155 #print("%s: In test %s" % (datetime.now(), self._testMethodName)) |
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156 |
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157 def AssertSameImages(self, truth, url): |
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158 im = GetImage(_REMOTE, url) |
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159 self.assertTrue(CompareLists(truth, im.getdata())) |
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160 |
| 3 | 161 |
| 162 def test_system(self): | |
| 177 | 163 self.assertTrue('Version' in DoGet(_REMOTE, '/system')) |
| 164 self.assertEqual('0', DoGet(_REMOTE, '/statistics')['TotalDiskSize']) | |
| 165 self.assertEqual('0', DoGet(_REMOTE, '/statistics')['TotalUncompressedSize']) | |
| 166 | |
| 167 systemInfo = DoGet(_REMOTE, '/system') | |
| 168 if systemInfo["Version"] == "mainline": | |
| 169 print "Skipping version checks since you're currently in mainline" | |
| 170 return | |
| 171 | |
| 173 | 172 self.assertTrue(IsOrthancVersionAbove(_LOCAL, 0, 8, 6)) |
| 173 self.assertFalse(IsOrthancVersionAbove(_LOCAL, 0, 8, 7)) | |
| 174 self.assertTrue(IsOrthancVersionAbove(_LOCAL, 0, 7, 6)) | |
| 175 self.assertFalse(IsOrthancVersionAbove(_LOCAL, 0, 9, 6)) | |
| 176 self.assertFalse(IsOrthancVersionAbove(_LOCAL, 1, 8, 6)) | |
| 3 | 177 |
| 178 def test_upload(self): | |
| 173 | 179 self.assertEqual('0', DoGet(_REMOTE, '/statistics')['TotalDiskSize']) |
| 180 self.assertEqual('0', DoGet(_REMOTE, '/statistics')['TotalUncompressedSize']) | |
| 181 | |
| 182 sizeDummyCT = 2472 | |
| 183 sizeOverwrite = 2476 | |
| 184 instance = '66a662ce-7430e543-bad44d47-0dc5a943-ec7a538d' | |
| 185 | |
| 3 | 186 u = UploadInstance(_REMOTE, 'DummyCT.dcm') |
| 183 | 187 self.assertEqual(instance, u['ID']) |
| 3 | 188 self.assertEqual('Success', u['Status']) |
| 173 | 189 |
| 183 | 190 if True: |
| 191 # New test for Orthanc 1.4.3 | |
| 192 self.assertEqual('f2635388-f01d497a-15f7c06b-ad7dba06-c4c599fe', u['ParentSeries']) | |
| 193 self.assertEqual('b9c08539-26f93bde-c81ab0d7-bffaf2cb-a4d0bdd0', u['ParentStudy']) | |
| 194 self.assertEqual('6816cb19-844d5aee-85245eba-28e841e6-2414fae2', u['ParentPatient']) | |
| 195 | |
| 173 | 196 j = int(DoGet(_REMOTE, '/instances/%s/attachments/dicom-as-json/size' % instance)) |
| 197 s = sizeDummyCT + j | |
| 198 self.assertEqual('%d' % s, DoGet(_REMOTE, '/statistics')['TotalDiskSize']) | |
| 199 self.assertEqual('%d' % s, DoGet(_REMOTE, '/statistics')['TotalUncompressedSize']) | |
| 200 | |
| 3 | 201 u = UploadInstance(_REMOTE, 'DummyCT.dcm') |
| 202 self.assertEqual(1, len(DoGet(_REMOTE, '/patients'))) | |
| 203 self.assertEqual(1, len(DoGet(_REMOTE, '/studies'))) | |
| 204 self.assertEqual(1, len(DoGet(_REMOTE, '/series'))) | |
| 205 self.assertEqual(1, len(DoGet(_REMOTE, '/instances'))) | |
| 173 | 206 self.assertEqual('%d' % s, DoGet(_REMOTE, '/statistics')['TotalDiskSize']) |
| 207 self.assertEqual('%d' % s, DoGet(_REMOTE, '/statistics')['TotalUncompressedSize']) | |
| 208 | |
| 209 i = DoGet(_REMOTE, '/instances/%s/simplified-tags' % instance) | |
| 3 | 210 self.assertEqual('20070101', i['StudyDate']) |
| 173 | 211 self.assertEqual('KNIX', i['PatientName']) |
| 212 | |
| 213 if IsOrthancVersionAbove(_REMOTE, 1, 4, 2): | |
| 214 # Overwriting | |
| 215 self.assertEqual('Success', u['Status']) | |
| 216 else: | |
| 217 self.assertEqual('AlreadyStored', u['Status']) | |
| 218 | |
| 219 u = UploadInstance(_REMOTE, 'DummyCT-overwrite.dcm') | |
| 220 self.assertEqual(1, len(DoGet(_REMOTE, '/patients'))) | |
| 221 self.assertEqual(1, len(DoGet(_REMOTE, '/studies'))) | |
| 222 self.assertEqual(1, len(DoGet(_REMOTE, '/series'))) | |
| 223 self.assertEqual(1, len(DoGet(_REMOTE, '/instances'))) | |
| 224 | |
| 225 if IsOrthancVersionAbove(_REMOTE, 1, 4, 2): | |
| 226 # Overwriting | |
| 227 self.assertEqual('Success', u['Status']) | |
| 228 j2 = int(DoGet(_REMOTE, '/instances/%s/attachments/dicom-as-json/size' % instance)) | |
| 229 s2 = sizeOverwrite + j2 | |
| 230 self.assertNotEqual(s, s2) | |
| 231 self.assertNotEqual(j, j2) | |
| 232 self.assertEqual('%d' % s2, DoGet(_REMOTE, '/statistics')['TotalDiskSize']) | |
| 233 self.assertEqual('%d' % s2, DoGet(_REMOTE, '/statistics')['TotalUncompressedSize']) | |
| 234 i = DoGet(_REMOTE, '/instances/%s/simplified-tags' % instance) | |
| 235 self.assertEqual('ANOTHER', i['PatientName']) | |
| 236 else: | |
| 237 self.assertEqual('AlreadyStored', u['Status']) | |
| 238 self.assertEqual('%d' % s, DoGet(_REMOTE, '/statistics')['TotalDiskSize']) | |
| 239 self.assertEqual('%d' % s, DoGet(_REMOTE, '/statistics')['TotalUncompressedSize']) | |
| 3 | 240 |
| 5 | 241 def test_upload_2(self): |
| 3 | 242 i = UploadInstance(_REMOTE, 'DummyCT.dcm')['ID'] |
| 243 instance = DoGet(_REMOTE, '/instances/%s' % i) | |
| 244 self.assertEqual(i, instance['ID']) | |
| 245 self.assertEqual('1.2.840.113619.2.176.2025.1499492.7040.1171286242.109', | |
| 246 instance['MainDicomTags']['SOPInstanceUID']) | |
| 247 | |
| 248 series = DoGet(_REMOTE, '/series/%s' % instance['ParentSeries']) | |
| 249 self.assertEqual('1.2.840.113619.2.176.2025.1499492.7391.1171285944.394', | |
| 250 series['MainDicomTags']['SeriesInstanceUID']) | |
| 251 | |
| 252 study = DoGet(_REMOTE, '/studies/%s' % series['ParentStudy']) | |
| 253 self.assertEqual('1.2.840.113619.2.176.2025.1499492.7391.1171285944.390', | |
| 254 study['MainDicomTags']['StudyInstanceUID']) | |
| 255 | |
| 256 patient = DoGet(_REMOTE, '/patients/%s' % study['ParentPatient']) | |
| 257 self.assertEqual('ozp00SjY2xG', | |
| 258 patient['MainDicomTags']['PatientID']) | |
| 259 | |
| 260 dicom = DoGet(_REMOTE, '/instances/%s/file' % instance['ID']) | |
| 261 self.assertEqual(2472, len(dicom)) | |
| 262 self.assertEqual('3e29b869978b6db4886355a2b1132124', ComputeMD5(dicom)) | |
| 263 self.assertEqual(1, len(DoGet(_REMOTE, '/instances/%s/frames' % i))) | |
| 264 self.assertEqual('TWINOW', DoGet(_REMOTE, '/instances/%s/simplified-tags' % i)['StationName']) | |
| 265 self.assertEqual('TWINOW', DoGet(_REMOTE, '/instances/%s/tags' % i)['0008,1010']['Value']) | |
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266 self.assertEqual('TWINOW', DoGet(_REMOTE, '/instances/%s/tags?simplify' % i)['StationName']) |
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267 self.assertEqual('TWINOW', DoGet(_REMOTE, '/instances/%s/tags?short' % i)['0008,1010']) |
| 3 | 268 |
| 269 | |
| 5 | 270 def test_images(self): |
| 271 i = UploadInstance(_REMOTE, 'Phenix/IM-0001-0001.dcm')['ID'] | |
| 272 self.assertEqual(1, len(DoGet(_REMOTE, '/instances/%s/frames' % i))) | |
| 3 | 273 |
| 5 | 274 im = GetImage(_REMOTE, '/instances/%s/preview' % i) |
| 275 self.assertEqual("L", im.mode) | |
| 276 self.assertEqual(512, im.size[0]) | |
| 277 self.assertEqual(358, im.size[1]) | |
| 278 | |
| 279 im = GetImage(_REMOTE, '/instances/%s/image-uint8' % i) | |
| 280 self.assertEqual("L", im.mode) | |
| 281 self.assertEqual(512, im.size[0]) | |
| 282 self.assertEqual(358, im.size[1]) | |
| 283 | |
| 284 im = GetImage(_REMOTE, '/instances/%s/image-uint16' % i) | |
| 285 self.assertEqual(512, im.size[0]) | |
| 286 self.assertEqual(358, im.size[1]) | |
| 287 | |
| 288 im = GetImage(_REMOTE, '/instances/%s/frames/0/preview' % i) | |
| 289 self.assertEqual("L", im.mode) | |
| 290 self.assertEqual(512, im.size[0]) | |
| 291 self.assertEqual(358, im.size[1]) | |
| 292 | |
| 293 im = GetImage(_REMOTE, '/instances/%s/frames/0/image-uint8' % i) | |
| 294 self.assertEqual("L", im.mode) | |
| 295 self.assertEqual(512, im.size[0]) | |
| 296 self.assertEqual(358, im.size[1]) | |
| 297 | |
| 298 im = GetImage(_REMOTE, '/instances/%s/frames/0/image-uint16' % i) | |
| 299 self.assertEqual(512, im.size[0]) | |
| 300 self.assertEqual(358, im.size[1]) | |
| 64 | 301 |
| 302 # This is Little Endian Explicit | |
| 303 self.assertEqual('1.2.840.10008.1.2.1', DoGet(_REMOTE, '/instances/%s/header?simplify' % i)['TransferSyntaxUID']) | |
| 304 | |
| 6 | 305 |
| 306 def test_hierarchy(self): | |
| 307 UploadFolder(_REMOTE, 'Brainix/Epi') | |
| 308 UploadFolder(_REMOTE, 'Brainix/Flair') | |
| 309 UploadFolder(_REMOTE, 'Knee/T1') | |
| 310 UploadFolder(_REMOTE, 'Knee/T2') | |
| 311 | |
| 312 p = DoGet(_REMOTE, '/patients') | |
| 313 s = DoGet(_REMOTE, '/studies') | |
| 314 t = DoGet(_REMOTE, '/series') | |
| 315 self.assertEqual(2, len(p)) | |
| 316 self.assertEqual(2, len(s)) | |
| 317 self.assertEqual(4, len(t)) | |
| 318 self.assertEqual(94, len(DoGet(_REMOTE, '/instances'))) | |
| 319 | |
| 320 brainixPatient = '16738bc3-e47ed42a-43ce044c-a3414a45-cb069bd0' | |
| 321 brainixStudy = '27f7126f-4f66fb14-03f4081b-f9341db2-53925988' | |
| 322 brainixEpi = '2ac1316d-3e432022-62eabff2-c59f5475-9b1ac3f8' | |
| 323 brainixFlair = '1e2c125c-411b8e86-3f4fe68e-a7584dd3-c6da78f0' | |
| 324 | |
| 325 kneePatient = 'ca29faea-b6a0e17f-067743a1-8b778011-a48b2a17' | |
| 326 kneeStudy = '0a9b3153-2512774b-2d9580de-1fc3dcf6-3bd83918' | |
| 327 kneeT1 = '6de73705-c4e65c1b-9d9ea1b5-cabcd8e7-f15e4285' | |
| 328 kneeT2 = 'bbf7a453-0d34251a-03663b55-46bb31b9-ffd74c59' | |
| 329 | |
| 330 self.assertTrue(brainixPatient in p) | |
| 331 self.assertTrue(kneePatient in p) | |
| 332 self.assertTrue(brainixStudy in s) | |
| 333 self.assertTrue(kneeStudy in s) | |
| 334 self.assertTrue(brainixEpi in t) | |
| 335 self.assertTrue(brainixFlair in t) | |
| 336 self.assertTrue(kneeT1 in t) | |
| 337 self.assertTrue(kneeT2 in t) | |
| 338 | |
| 339 self.assertEqual(44, len(DoGet(_REMOTE, '/patients/%s/instances' % brainixPatient))) | |
| 340 self.assertEqual(2, len(DoGet(_REMOTE, '/patients/%s/series' % brainixPatient))) | |
| 341 self.assertEqual(1, len(DoGet(_REMOTE, '/patients/%s/studies' % brainixPatient))) | |
| 342 | |
| 343 self.assertEqual(50, len(DoGet(_REMOTE, '/patients/%s/instances' % kneePatient))) | |
| 344 self.assertEqual(2, len(DoGet(_REMOTE, '/patients/%s/series' % kneePatient))) | |
| 345 self.assertEqual(1, len(DoGet(_REMOTE, '/patients/%s/studies' % kneePatient))) | |
| 346 | |
| 347 self.assertEqual(2, len(DoGet(_REMOTE, '/studies/%s/series' % brainixStudy))) | |
| 348 self.assertEqual(44, len(DoGet(_REMOTE, '/studies/%s/instances' % brainixStudy))) | |
| 349 | |
| 350 self.assertEqual(2, len(DoGet(_REMOTE, '/studies/%s/series' % kneeStudy))) | |
| 351 self.assertEqual(50, len(DoGet(_REMOTE, '/studies/%s/instances' % kneeStudy))) | |
| 352 | |
| 353 self.assertEqual(22, len(DoGet(_REMOTE, '/series/%s/instances' % brainixEpi))) | |
| 354 self.assertEqual(22, len(DoGet(_REMOTE, '/series/%s/instances' % brainixFlair))) | |
| 355 self.assertEqual(24, len(DoGet(_REMOTE, '/series/%s/instances' % kneeT1))) | |
| 356 self.assertEqual(26, len(DoGet(_REMOTE, '/series/%s/instances' % kneeT2))) | |
| 357 | |
| 358 for patient in p: | |
| 359 for study in DoGet(_REMOTE, '/patients/%s/studies' % patient): | |
| 360 self.assertEqual(patient, study['ParentPatient']) | |
| 361 for series in DoGet(_REMOTE, '/studies/%s/series' % study['ID']): | |
| 362 self.assertEqual(study['ID'], series['ParentStudy']) | |
| 211 | 363 self.assertEqual('Unknown', series['Status']) |
| 6 | 364 for instance in DoGet(_REMOTE, '/series/%s/instances' % series['ID']): |
| 365 self.assertEqual(series['ID'], instance['ParentSeries']) | |
| 366 | |
| 367 self.assertEqual(json.dumps(DoGet(_REMOTE, '/instances/%s/attachments/dicom-as-json/data' % instance['ID'])), | |
| 368 json.dumps(DoGet(_REMOTE, '/instances/%s/tags' % instance['ID']))) | |
| 369 | |
| 370 | |
| 371 r = DoDelete(_REMOTE, "/studies/%s" % brainixStudy)['RemainingAncestor'] | |
| 372 self.assertEqual(1, len(DoGet(_REMOTE, '/patients'))) | |
| 373 self.assertEqual(1, len(DoGet(_REMOTE, '/studies'))) | |
| 374 self.assertEqual(2, len(DoGet(_REMOTE, '/series'))) | |
| 375 self.assertEqual(50, len(DoGet(_REMOTE, '/instances'))) | |
| 376 self.assertEqual(None, r) | |
| 377 | |
| 378 r = DoDelete(_REMOTE, "/series/%s" % kneeT2)['RemainingAncestor'] | |
| 379 self.assertEqual(1, len(DoGet(_REMOTE, '/patients'))) | |
| 380 self.assertEqual(1, len(DoGet(_REMOTE, '/studies'))) | |
| 381 self.assertEqual(1, len(DoGet(_REMOTE, '/series'))) | |
| 382 self.assertEqual(24, len(DoGet(_REMOTE, '/instances'))) | |
| 383 self.assertEqual('Study', r['Type']) | |
| 384 self.assertEqual(kneeStudy, r['ID']) | |
| 385 | |
| 386 r = DoDelete(_REMOTE, "/instances/%s" % DoGet(_REMOTE, '/instances')[0])['RemainingAncestor'] | |
| 387 self.assertEqual(1, len(DoGet(_REMOTE, '/patients'))) | |
| 388 self.assertEqual(1, len(DoGet(_REMOTE, '/studies'))) | |
| 389 self.assertEqual(1, len(DoGet(_REMOTE, '/series'))) | |
| 390 self.assertEqual(23, len(DoGet(_REMOTE, '/instances'))) | |
| 391 self.assertEqual('Series', r['Type']) | |
| 392 self.assertEqual(kneeT1, r['ID']) | |
| 393 | |
| 394 r = DoDelete(_REMOTE, "/patients/%s" % kneePatient)['RemainingAncestor'] | |
| 395 self.assertEqual(0, len(DoGet(_REMOTE, '/patients'))) | |
| 396 self.assertEqual(0, len(DoGet(_REMOTE, '/studies'))) | |
| 397 self.assertEqual(0, len(DoGet(_REMOTE, '/series'))) | |
| 398 self.assertEqual(0, len(DoGet(_REMOTE, '/instances'))) | |
| 399 self.assertEqual(None, r) | |
| 400 | |
| 401 DropOrthanc(_REMOTE) | |
| 402 self.assertEqual('0', DoGet(_REMOTE, '/statistics')['TotalDiskSize']) | |
| 403 self.assertEqual('0', DoGet(_REMOTE, '/statistics')['TotalUncompressedSize']) | |
| 7 | 404 |
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405 def test_delete_cascade(self): |
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406 # make sure deleting the last instance of a study deletes the series, study and patient |
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407 |
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408 self.assertEqual(0, len(DoGet(_REMOTE, '/instances'))) # make sure orthanc is empty when starting the test |
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409 a = UploadInstance(_REMOTE, 'DummyCT.dcm')['ID'] |
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410 self.assertEqual(1, len(DoGet(_REMOTE, '/instances'))) |
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411 self.assertEqual(1, len(DoGet(_REMOTE, '/series'))) |
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412 self.assertEqual(1, len(DoGet(_REMOTE, '/studies'))) |
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413 self.assertEqual(1, len(DoGet(_REMOTE, '/patients'))) |
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414 |
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415 DoDelete(_REMOTE, '/instances/%s' % a) |
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416 |
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417 self.assertEqual(0, len(DoGet(_REMOTE, '/instances'))) |
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418 self.assertEqual(0, len(DoGet(_REMOTE, '/series'))) |
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419 self.assertEqual(0, len(DoGet(_REMOTE, '/studies'))) |
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420 self.assertEqual(0, len(DoGet(_REMOTE, '/patients'))) |
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421 |
| 7 | 422 |
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423 def test_multiframe(self): |
| 7 | 424 i = UploadInstance(_REMOTE, 'Multiframe.dcm')['ID'] |
| 425 self.assertEqual(76, len(DoGet(_REMOTE, '/instances/%s/frames' % i))) | |
| 426 | |
| 427 im = GetImage(_REMOTE, '/instances/%s/frames/0/preview' % i) | |
| 428 self.assertEqual("L", im.mode) | |
| 429 self.assertEqual(512, im.size[0]) | |
| 430 self.assertEqual(512, im.size[1]) | |
| 431 | |
| 432 DoGet(_REMOTE, '/instances/%s/frames/0/image-uint8' % i) | |
| 433 DoGet(_REMOTE, '/instances/%s/frames/0/image-uint16' % i) | |
| 434 DoGet(_REMOTE, '/instances/%s/frames/75/preview' % i) | |
| 435 self.assertRaises(Exception, lambda: DoGet(_REMOTE, '/instances/%s/frames/aaa/preview' % i)) | |
| 436 self.assertRaises(Exception, lambda: DoGet(_REMOTE, '/instances/%s/frames/76/preview' % i)) | |
| 437 | |
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438 |
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439 def test_changes(self): |
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440 # Check emptiness |
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441 c = DoGet(_REMOTE, '/changes') |
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442 self.assertEqual(0, len(c['Changes'])) |
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443 #self.assertEqual(0, c['Last']) # Not true anymore for Orthanc >= 1.5.2 |
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444 self.assertTrue(c['Done']) |
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445 c = DoGet(_REMOTE, '/changes?last') |
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446 self.assertEqual(0, len(c['Changes'])) |
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447 #self.assertEqual(0, c['Last']) # Not true anymore for Orthanc >= 1.5.2 |
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448 self.assertTrue(c['Done']) |
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449 |
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450 # Add 1 instance |
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451 i = UploadInstance(_REMOTE, 'Brainix/Flair/IM-0001-0001.dcm')['ID'] |
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452 c = DoGet(_REMOTE, '/changes') |
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453 begin = c['Last'] |
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454 self.assertEqual(4, len(c['Changes'])) |
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455 self.assertTrue(c['Done']) |
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456 self.assertEqual(c['Changes'][-1]['Seq'], c['Last']) |
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457 |
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458 c = DoGet(_REMOTE, '/changes?last') |
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459 self.assertEqual(1, len(c['Changes'])) |
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460 self.assertEqual(begin, c['Last']) |
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461 self.assertTrue(c['Done']) |
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462 c = DoGet(_REMOTE, '/changes?limit=1&since=' + str(begin - 1)) |
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463 self.assertEqual(1, len(c['Changes'])) |
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464 self.assertEqual(begin, c['Last']) |
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465 self.assertTrue(c['Done']) |
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466 c = DoGet(_REMOTE, '/changes?limit=1&since=' + str(begin - 2)) |
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changeset
|
467 self.assertEqual(1, len(c['Changes'])) |
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changeset
|
468 self.assertEqual(begin - 1, c['Last']) |
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changeset
|
469 self.assertFalse(c['Done']) |
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diff
changeset
|
470 c = DoGet(_REMOTE, '/changes?limit=1&since=' + str(begin - 3)) |
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changeset
|
471 self.assertEqual(1, len(c['Changes'])) |
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diff
changeset
|
472 self.assertEqual(begin - 2, c['Last']) |
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changeset
|
473 self.assertFalse(c['Done']) |
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diff
changeset
|
474 |
|
f8d781d1d267
test_changes, test_archive, test_media_archive
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changeset
|
475 UploadFolder(_REMOTE, 'Knee/T1') |
|
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diff
changeset
|
476 UploadFolder(_REMOTE, 'Knee/T2') |
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diff
changeset
|
477 since = begin |
|
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diff
changeset
|
478 countPatients = 0 |
|
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479 countStudies = 0 |
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changeset
|
480 countSeries = 0 |
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diff
changeset
|
481 countInstances = 0 |
|
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diff
changeset
|
482 completed = 0 |
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parents:
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diff
changeset
|
483 while True: |
|
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changeset
|
484 c = DoGet(_REMOTE, '/changes', { 'since' : since, 'limit' : 3 }) |
|
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diff
changeset
|
485 since = c['Last'] |
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changeset
|
486 for i in c['Changes']: |
|
f8d781d1d267
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changeset
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487 if i['ResourceType'] == 'Instance': |
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changeset
|
488 countInstances += 1 |
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changeset
|
489 if i['ResourceType'] == 'Patient': |
|
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changeset
|
490 countPatients += 1 |
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changeset
|
491 if i['ResourceType'] == 'Study': |
|
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test_changes, test_archive, test_media_archive
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changeset
|
492 countStudies += 1 |
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changeset
|
493 if i['ResourceType'] == 'Series': |
|
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test_changes, test_archive, test_media_archive
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changeset
|
494 countSeries += 1 |
|
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diff
changeset
|
495 if i['ChangeType'] == 'NewInstance': |
|
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changeset
|
496 countInstances += 1 |
|
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changeset
|
497 if i['ChangeType'] == 'NewPatient': |
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changeset
|
498 countPatients += 1 |
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changeset
|
499 if i['ChangeType'] == 'NewStudy': |
|
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test_changes, test_archive, test_media_archive
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changeset
|
500 countStudies += 1 |
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changeset
|
501 if i['ChangeType'] == 'NewSeries': |
|
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test_changes, test_archive, test_media_archive
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changeset
|
502 countSeries += 1 |
|
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test_changes, test_archive, test_media_archive
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changeset
|
503 if i['ChangeType'] == 'CompletedSeries': |
|
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test_changes, test_archive, test_media_archive
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parents:
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diff
changeset
|
504 completed += 1 |
|
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test_changes, test_archive, test_media_archive
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diff
changeset
|
505 self.assertTrue('ID' in i) |
|
f8d781d1d267
test_changes, test_archive, test_media_archive
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diff
changeset
|
506 self.assertTrue('Path' in i) |
|
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parents:
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diff
changeset
|
507 self.assertTrue('Seq' in i) |
|
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test_changes, test_archive, test_media_archive
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changeset
|
508 if c['Done']: |
|
f8d781d1d267
test_changes, test_archive, test_media_archive
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
changeset
|
509 break |
|
f8d781d1d267
test_changes, test_archive, test_media_archive
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
7
diff
changeset
|
510 |
|
f8d781d1d267
test_changes, test_archive, test_media_archive
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diff
changeset
|
511 self.assertEqual(2 * 50, countInstances) |
|
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test_changes, test_archive, test_media_archive
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changeset
|
512 self.assertEqual(2 * 1, countPatients) |
|
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changeset
|
513 self.assertEqual(2 * 1, countStudies) |
|
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changeset
|
514 self.assertEqual(2 * 2, countSeries) |
|
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changeset
|
515 self.assertEqual(0, completed) |
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parents:
7
diff
changeset
|
516 |
|
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parents:
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diff
changeset
|
517 |
|
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changeset
|
518 def test_archive(self): |
|
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changeset
|
519 UploadInstance(_REMOTE, 'Knee/T1/IM-0001-0001.dcm') |
|
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test_changes, test_archive, test_media_archive
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diff
changeset
|
520 UploadInstance(_REMOTE, 'Knee/T2/IM-0001-0001.dcm') |
| 192 | 521 knee = 'ca29faea-b6a0e17f-067743a1-8b778011-a48b2a17' |
| 522 | |
| 523 z = GetArchive(_REMOTE, '/patients/%s/archive' % knee) | |
|
8
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changeset
|
524 self.assertEqual(2, len(z.namelist())) |
|
f8d781d1d267
test_changes, test_archive, test_media_archive
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parents:
7
diff
changeset
|
525 |
|
f8d781d1d267
test_changes, test_archive, test_media_archive
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7
diff
changeset
|
526 z = GetArchive(_REMOTE, '/studies/%s/archive' % DoGet(_REMOTE, '/studies')[0]) |
|
f8d781d1d267
test_changes, test_archive, test_media_archive
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diff
changeset
|
527 self.assertEqual(2, len(z.namelist())) |
|
f8d781d1d267
test_changes, test_archive, test_media_archive
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parents:
7
diff
changeset
|
528 |
|
f8d781d1d267
test_changes, test_archive, test_media_archive
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parents:
7
diff
changeset
|
529 z = GetArchive(_REMOTE, '/series/%s/archive' % DoGet(_REMOTE, '/series')[0]) |
|
f8d781d1d267
test_changes, test_archive, test_media_archive
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7
diff
changeset
|
530 self.assertEqual(1, len(z.namelist())) |
|
f8d781d1d267
test_changes, test_archive, test_media_archive
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parents:
7
diff
changeset
|
531 |
|
f8d781d1d267
test_changes, test_archive, test_media_archive
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
7
diff
changeset
|
532 UploadInstance(_REMOTE, 'Brainix/Flair/IM-0001-0001.dcm') |
| 192 | 533 brainix = '16738bc3-e47ed42a-43ce044c-a3414a45-cb069bd0' |
| 534 | |
| 535 z = GetArchive(_REMOTE, '/patients/%s/archive' % knee) | |
|
8
f8d781d1d267
test_changes, test_archive, test_media_archive
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
7
diff
changeset
|
536 self.assertEqual(2, len(z.namelist())) |
| 192 | 537 |
| 538 z = PostArchive(_REMOTE, '/tools/create-archive', { | |
| 539 'Resources' : [ brainix, knee ] | |
| 540 }) | |
| 541 self.assertEqual(3, len(z.namelist())) | |
| 542 | |
|
8
f8d781d1d267
test_changes, test_archive, test_media_archive
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
7
diff
changeset
|
543 |
|
f8d781d1d267
test_changes, test_archive, test_media_archive
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
7
diff
changeset
|
544 def test_media_archive(self): |
|
f8d781d1d267
test_changes, test_archive, test_media_archive
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
7
diff
changeset
|
545 UploadInstance(_REMOTE, 'Knee/T1/IM-0001-0001.dcm') |
|
f8d781d1d267
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parents:
7
diff
changeset
|
546 UploadInstance(_REMOTE, 'Knee/T2/IM-0001-0001.dcm') |
|
f8d781d1d267
test_changes, test_archive, test_media_archive
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
7
diff
changeset
|
547 |
|
f8d781d1d267
test_changes, test_archive, test_media_archive
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
7
diff
changeset
|
548 z = GetArchive(_REMOTE, '/patients/%s/media' % DoGet(_REMOTE, '/patients')[0]) |
|
f8d781d1d267
test_changes, test_archive, test_media_archive
Sebastien Jodogne <s.jodogne@gmail.com>
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7
diff
changeset
|
549 self.assertEqual(3, len(z.namelist())) |
|
f8d781d1d267
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parents:
7
diff
changeset
|
550 self.assertTrue('IMAGES/IM0' in z.namelist()) |
|
f8d781d1d267
test_changes, test_archive, test_media_archive
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
7
diff
changeset
|
551 self.assertTrue('IMAGES/IM1' in z.namelist()) |
|
f8d781d1d267
test_changes, test_archive, test_media_archive
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
7
diff
changeset
|
552 self.assertTrue('DICOMDIR' in z.namelist()) |
|
f8d781d1d267
test_changes, test_archive, test_media_archive
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
7
diff
changeset
|
553 |
|
f8d781d1d267
test_changes, test_archive, test_media_archive
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
7
diff
changeset
|
554 try: |
|
f8d781d1d267
test_changes, test_archive, test_media_archive
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
7
diff
changeset
|
555 os.remove('/tmp/DICOMDIR') |
|
f8d781d1d267
test_changes, test_archive, test_media_archive
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
7
diff
changeset
|
556 except: |
|
f8d781d1d267
test_changes, test_archive, test_media_archive
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
7
diff
changeset
|
557 # The file does not exist |
|
f8d781d1d267
test_changes, test_archive, test_media_archive
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
7
diff
changeset
|
558 pass |
|
f8d781d1d267
test_changes, test_archive, test_media_archive
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
7
diff
changeset
|
559 |
|
f8d781d1d267
test_changes, test_archive, test_media_archive
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
7
diff
changeset
|
560 z.extract('DICOMDIR', '/tmp') |
| 45 | 561 a = subprocess.check_output([ FindExecutable('dciodvfy'), '/tmp/DICOMDIR' ], |
|
8
f8d781d1d267
test_changes, test_archive, test_media_archive
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
7
diff
changeset
|
562 stderr = subprocess.STDOUT).split('\n') |
|
f8d781d1d267
test_changes, test_archive, test_media_archive
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
7
diff
changeset
|
563 self.assertEqual(3, len(a)) |
|
f8d781d1d267
test_changes, test_archive, test_media_archive
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
7
diff
changeset
|
564 self.assertTrue(a[0].startswith('Warning')) |
|
f8d781d1d267
test_changes, test_archive, test_media_archive
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
7
diff
changeset
|
565 self.assertEqual('BasicDirectory', a[1]) |
|
f8d781d1d267
test_changes, test_archive, test_media_archive
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parents:
7
diff
changeset
|
566 self.assertEqual('', a[2]) |
|
f8d781d1d267
test_changes, test_archive, test_media_archive
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
7
diff
changeset
|
567 |
| 45 | 568 a = subprocess.check_output([ FindExecutable('dcentvfy'), '/tmp/DICOMDIR' ], |
|
8
f8d781d1d267
test_changes, test_archive, test_media_archive
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
7
diff
changeset
|
569 stderr = subprocess.STDOUT).split('\n') |
|
f8d781d1d267
test_changes, test_archive, test_media_archive
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
7
diff
changeset
|
570 self.assertEqual(1, len(a)) |
|
f8d781d1d267
test_changes, test_archive, test_media_archive
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
7
diff
changeset
|
571 self.assertEqual('', a[0]) |
|
f8d781d1d267
test_changes, test_archive, test_media_archive
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
7
diff
changeset
|
572 |
| 45 | 573 a = subprocess.check_output([ FindExecutable('dcm2xml'), '/tmp/DICOMDIR' ]) |
|
8
f8d781d1d267
test_changes, test_archive, test_media_archive
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
7
diff
changeset
|
574 self.assertTrue(re.search('1.3.46.670589.11.17521.5.0.3124.2008081908590448738', a) != None) |
|
f8d781d1d267
test_changes, test_archive, test_media_archive
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
7
diff
changeset
|
575 self.assertTrue(re.search('1.3.46.670589.11.17521.5.0.3124.2008081909113806560', a) != None) |
|
f8d781d1d267
test_changes, test_archive, test_media_archive
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
7
diff
changeset
|
576 |
|
f8d781d1d267
test_changes, test_archive, test_media_archive
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
7
diff
changeset
|
577 os.remove('/tmp/DICOMDIR') |
| 10 | 578 |
| 579 | |
| 580 def test_protection(self): | |
| 581 UploadInstance(_REMOTE, 'Knee/T1/IM-0001-0001.dcm') | |
| 582 UploadInstance(_REMOTE, 'Brainix/Flair/IM-0001-0001.dcm') | |
| 583 self.assertEqual(2, len(DoGet(_REMOTE, '/patients'))) | |
| 584 a = DoGet(_REMOTE, '/patients')[0] | |
| 585 b = DoGet(_REMOTE, '/patients')[1] | |
| 586 self.assertEqual(0, DoGet(_REMOTE, '/patients/%s/protected' % a)) | |
| 587 DoPut(_REMOTE, '/patients/%s/protected' % a, '0', 'text/plain') | |
| 588 self.assertEqual(0, DoGet(_REMOTE, '/patients/%s/protected' % a)) | |
| 589 DoPut(_REMOTE, '/patients/%s/protected' % a, '1', 'text/plain') | |
| 590 self.assertEqual(1, DoGet(_REMOTE, '/patients/%s/protected' % a)) | |
| 591 DoPut(_REMOTE, '/patients/%s/protected' % a, '0', 'text/plain') | |
| 592 self.assertEqual(0, DoGet(_REMOTE, '/patients/%s/protected' % a)) | |
| 593 | |
| 594 | |
| 12 | 595 def test_raw_tags(self): |
| 10 | 596 i = UploadInstance(_REMOTE, 'PrivateTags.dcm')['ID'] |
| 597 | |
| 598 dicom = DoGet(_REMOTE, '/instances/%s/file' % i) | |
| 599 self.assertEqual('1a7c56cb02d6e742cc9c856a8ac182e3', ComputeMD5(dicom)) | |
| 600 | |
| 601 s = '/instances/%s/content/' % i | |
| 602 | |
| 603 self.assertEqual('LOGIQBOOK', DoGet(_REMOTE, s + '0008-1010').strip()) | |
| 604 self.assertRaises(Exception, lambda: DoGet(_REMOTE, s + '0008-1011')) | |
| 605 | |
| 606 self.assertEqual('Abdomen', DoGet(_REMOTE, s + '7fe1-1001/0/7fe1-1008/0/7fe1-1057').strip()) | |
| 607 self.assertEqual('cla_3c', DoGet(_REMOTE, s + '7fe1-1001/0/7fe1-1008/8/7fe1-1057').strip()) | |
| 608 | |
| 609 UploadInstance(_REMOTE, 'Brainix/Epi/IM-0001-0001.dcm') | |
| 610 UploadInstance(_REMOTE, 'Brainix/Flair/IM-0001-0001.dcm') | |
| 611 UploadInstance(_REMOTE, 'Knee/T1/IM-0001-0001.dcm') | |
| 612 UploadInstance(_REMOTE, 'Knee/T2/IM-0001-0001.dcm') | |
| 613 | |
| 614 for i in DoGet(_REMOTE, '/instances'): | |
| 615 aid = DoGet(_REMOTE, '/instances/%s' % i)['MainDicomTags']['SOPInstanceUID'] | |
| 616 self.assertEqual(aid, DoGet(_REMOTE, '/instances/%s/content/0008-0018' % i).replace(chr(0), '')) | |
| 617 | |
| 618 | |
| 619 def test_raw_tags_mdn(self): | |
| 620 # Bug reported by Cyril Paulus | |
| 621 i = UploadInstance(_REMOTE, 'PrivateMDNTags.dcm')['ID'] | |
| 622 self.assertAlmostEqual(0.000027, DoGet(_REMOTE, '/instances/%s/content/7053-1000' % i)) | |
| 623 | |
| 624 | |
| 625 def test_modify_instance(self): | |
| 626 i = UploadInstance(_REMOTE, 'PrivateTags.dcm')['ID'] | |
| 627 modified = DoPost(_REMOTE, '/instances/%s/modify' % i, | |
| 628 json.dumps({ | |
| 629 "Replace" : { | |
| 630 "PatientName" : "hello", | |
| 631 #"PatientID" : "world" | |
| 632 }, | |
| 633 "Remove" : [ "StationName" ], | |
|
118
a954c535fef6
test_bitbucket_issue_55
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
117
diff
changeset
|
634 "RemovePrivateTags" : True |
| 10 | 635 }), |
| 636 'application/json') | |
| 637 j = DoPost(_REMOTE, '/instances', modified, 'application/dicom')['ID'] | |
| 638 | |
| 639 self.assertNotEqual('hello', DoGet(_REMOTE, '/instances/%s/content/0010-0010' % i).strip()) | |
| 640 #self.assertNotEqual('world', DoGet(_REMOTE, '/instances/%s/content/0010-0020' % i).strip()) | |
| 83 | 641 self.assertEqual('LOGIQBOOK', DoGet(_REMOTE, '/instances/%s/content/0008-1010' % i).strip()) |
| 10 | 642 DoGet(_REMOTE, '/instances/%s/content/6003-1010' % i) # Some private tag |
| 643 | |
| 644 self.assertEqual('hello', DoGet(_REMOTE, '/instances/%s/content/0010-0010' % j).strip()) | |
| 645 #self.assertEqual('world', DoGet(_REMOTE, '/instances/%s/content/0010-0020' % j).strip()) | |
| 646 self.assertRaises(Exception, lambda: DoGet(_REMOTE, '/instances/%s/content/0008-1010' % j)) | |
| 647 self.assertRaises(Exception, lambda: DoGet(_REMOTE, '/instances/%s/content/6003-1010' % j)) | |
| 648 | |
| 649 | |
| 650 def test_modify_series(self): | |
| 651 # Upload 4 images from the same series | |
| 652 for i in range(4): | |
| 653 UploadInstance(_REMOTE, 'Brainix/Epi/IM-0001-000%d.dcm' % (i + 1)) | |
| 654 | |
| 655 origSeries = DoGet(_REMOTE, '/series')[0] | |
| 656 newSeries = DoPost(_REMOTE, '/series/%s/modify' % origSeries, | |
| 657 '{"Replace":{"PatientName":"Jodogne"}}', | |
| 658 'application/json')['ID'] | |
| 659 | |
| 660 self.assertEqual(origSeries, DoGet(_REMOTE, '/series/%s' % newSeries)['ModifiedFrom']) | |
| 661 instances = DoGet(_REMOTE, '/series/%s' % newSeries)['Instances'] | |
| 662 self.assertEqual(4, len(instances)) | |
| 663 for i in instances: | |
| 664 j = DoGet(_REMOTE, '/instances/%s' % i)['ModifiedFrom'] | |
| 665 self.assertEqual(newSeries, DoGet(_REMOTE, '/instances/%s' % i)['ParentSeries']) | |
| 666 self.assertEqual(origSeries, DoGet(_REMOTE, '/instances/%s' % j)['ParentSeries']) | |
| 667 | |
| 668 self.assertEqual('Jodogne', DoGet(_REMOTE, '/instances/%s/content/0010-0010' % i).strip()) | |
| 669 self.assertNotEqual('Jodogne', DoGet(_REMOTE, '/instances/%s/content/0010-0010' % j).strip()) | |
| 670 | |
| 671 | |
| 672 def test_modify_study(self): | |
| 673 # Upload 4 images from the 2 series of the same study | |
| 674 for i in range(4): | |
| 675 UploadInstance(_REMOTE, 'Brainix/Flair/IM-0001-000%d.dcm' % (i + 1)) | |
| 676 UploadInstance(_REMOTE, 'Brainix/Epi/IM-0001-000%d.dcm' % (i + 1)) | |
| 677 | |
| 678 origStudy = DoGet(_REMOTE, '/studies')[0] | |
| 679 newStudy = DoPost(_REMOTE, '/studies/%s/modify' % origStudy, | |
| 680 '{"Replace":{"PatientName":"Jodogne"}}', | |
| 681 'application/json')['ID'] | |
| 682 | |
| 683 self.assertEqual(origStudy, DoGet(_REMOTE, '/studies/%s' % newStudy)['ModifiedFrom']) | |
| 684 series = DoGet(_REMOTE, '/studies/%s' % newStudy)['Series'] | |
| 685 self.assertEqual(2, len(series)) | |
| 686 for s in series: | |
| 687 ss = DoGet(_REMOTE, '/series/%s' % s)['ModifiedFrom'] | |
| 688 self.assertEqual(newStudy, DoGet(_REMOTE, '/series/%s' % s)['ParentStudy']) | |
| 689 self.assertEqual(origStudy, DoGet(_REMOTE, '/series/%s' % ss)['ParentStudy']) | |
| 690 | |
| 691 instances = DoGet(_REMOTE, '/series/%s' % s)['Instances'] | |
| 692 for i in instances: | |
| 693 j = DoGet(_REMOTE, '/instances/%s' % i)['ModifiedFrom'] | |
| 694 self.assertEqual(s, DoGet(_REMOTE, '/instances/%s' % i)['ParentSeries']) | |
| 695 self.assertEqual(ss, DoGet(_REMOTE, '/instances/%s' % j)['ParentSeries']) | |
| 696 | |
| 697 self.assertEqual('Jodogne', DoGet(_REMOTE, '/instances/%s/content/0010-0010' % i).strip()) | |
| 698 self.assertNotEqual('Jodogne', DoGet(_REMOTE, '/instances/%s/content/0010-0010' % j).strip()) | |
| 699 | |
| 700 | |
| 701 def test_anonymize_series(self): | |
| 702 # Upload 4 images from the same series | |
| 703 for i in range(4): | |
| 704 UploadInstance(_REMOTE, 'Brainix/Epi/IM-0001-000%d.dcm' % (i + 1)) | |
| 705 | |
| 706 origSeries = DoGet(_REMOTE, '/series')[0] | |
| 707 newSeries = DoPost(_REMOTE, '/series/%s/anonymize' % origSeries, | |
| 708 '{}', | |
| 709 'application/json')['ID'] | |
| 710 | |
| 711 self.assertEqual(origSeries, DoGet(_REMOTE, '/series/%s' % newSeries)['AnonymizedFrom']) | |
| 712 instances = DoGet(_REMOTE, '/series/%s' % newSeries)['Instances'] | |
| 713 self.assertEqual(4, len(instances)) | |
| 714 for i in instances: | |
| 715 j = DoGet(_REMOTE, '/instances/%s' % i)['AnonymizedFrom'] | |
| 716 self.assertEqual(newSeries, DoGet(_REMOTE, '/instances/%s' % i)['ParentSeries']) | |
| 717 self.assertEqual(origSeries, DoGet(_REMOTE, '/instances/%s' % j)['ParentSeries']) | |
| 718 | |
| 719 DoGet(_REMOTE, '/instances/%s/content/0008-1010' % j) | |
| 720 self.assertRaises(Exception, lambda: DoGet(_REMOTE, '/instances/%s/content/0008-1010' % i)) | |
| 721 | |
| 722 | |
| 723 def test_anonymize_study(self): | |
| 724 # Upload 4 images from the 2 series of the same study | |
| 725 for i in range(4): | |
| 726 UploadInstance(_REMOTE, 'Brainix/Flair/IM-0001-000%d.dcm' % (i + 1)) | |
| 727 UploadInstance(_REMOTE, 'Brainix/Epi/IM-0001-000%d.dcm' % (i + 1)) | |
| 728 | |
| 729 origStudy = DoGet(_REMOTE, '/studies')[0] | |
| 730 newStudy = DoPost(_REMOTE,'/studies/%s/anonymize' % origStudy, | |
| 731 '{"Replace":{"PatientName":"Jodogne"}}', | |
| 732 'application/json')['ID'] | |
| 733 | |
| 734 self.assertEqual(origStudy, DoGet(_REMOTE, '/studies/%s' % newStudy)['AnonymizedFrom']) | |
| 735 series = DoGet(_REMOTE, '/studies/%s' % newStudy)['Series'] | |
| 736 self.assertEqual(2, len(series)) | |
| 737 for s in series: | |
| 738 ss = DoGet(_REMOTE, '/series/%s' % s)['AnonymizedFrom'] | |
| 739 self.assertEqual(newStudy, DoGet(_REMOTE, '/series/%s' % s)['ParentStudy']) | |
| 740 self.assertEqual(origStudy, DoGet(_REMOTE, '/series/%s' % ss)['ParentStudy']) | |
| 741 | |
| 742 instances = DoGet(_REMOTE, '/series/%s' % s)['Instances'] | |
| 743 for i in instances: | |
| 744 j = DoGet(_REMOTE, '/instances/%s' % i)['AnonymizedFrom'] | |
| 745 self.assertEqual(s, DoGet(_REMOTE, '/instances/%s' % i)['ParentSeries']) | |
| 746 self.assertEqual(ss, DoGet(_REMOTE, '/instances/%s' % j)['ParentSeries']) | |
| 747 | |
| 748 self.assertEqual('Jodogne', DoGet(_REMOTE, '/instances/%s/content/0010-0010' % i).strip()) | |
| 749 self.assertNotEqual('Jodogne', DoGet(_REMOTE, '/instances/%s/content/0010-0010' % j).strip()) | |
| 11 | 750 |
| 751 | |
| 752 | |
| 753 def test_storescu(self): | |
| 754 # Check emptiness | |
| 755 e = DoGet(_REMOTE, '/exports') | |
| 756 self.assertEqual(0, len(e['Exports'])) | |
| 757 self.assertEqual(0, e['Last']) | |
| 758 self.assertTrue(e['Done']) | |
| 759 e = DoGet(_REMOTE, '/exports?last') | |
| 760 self.assertEqual(0, len(e['Exports'])) | |
| 761 self.assertEqual(0, e['Last']) | |
| 762 self.assertTrue(e['Done']) | |
| 763 | |
| 764 # Add 1 instance | |
| 765 i = UploadInstance(_REMOTE, 'DummyCT.dcm')['ID'] | |
| 766 self.assertEqual(0, len(DoGet(_LOCAL, '/patients'))) | |
| 767 | |
| 768 # Export the instance | |
| 769 j = DoPost(_REMOTE, '/modalities/orthanctest/store', str(i), 'text/plain') # instance | |
| 770 self.assertEqual(1, len(DoGet(_LOCAL, '/patients'))) | |
| 771 self.assertEqual(1, len(DoGet(_LOCAL, '/studies'))) | |
| 772 self.assertEqual(1, len(DoGet(_LOCAL, '/series'))) | |
| 773 self.assertEqual(1, len(DoGet(_LOCAL, '/instances'))) | |
| 774 | |
| 775 e = DoGet(_REMOTE, '/exports') | |
| 776 self.assertEqual(1, len(e['Exports'])) | |
| 777 self.assertTrue(e['Done']) | |
| 778 self.assertEqual(e['Exports'][-1]['Seq'], e['Last']) | |
| 779 e = DoGet(_REMOTE, '/exports?limit=1') | |
| 780 self.assertEqual(1, len(e['Exports'])) | |
| 781 self.assertTrue(e['Done']) | |
| 782 self.assertEqual(e['Exports'][-1]['Seq'], e['Last']) | |
| 783 e = DoGet(_REMOTE, '/exports?last') | |
| 784 self.assertEqual(1, len(e['Exports'])) | |
| 785 self.assertTrue(e['Done']) | |
| 786 self.assertEqual(e['Exports'][-1]['Seq'], e['Last']) | |
| 787 seqInstance = e['Last'] | |
| 788 | |
| 789 # Export the series | |
| 790 j = DoPost(_REMOTE, '/modalities/orthanctest/store', 'f2635388-f01d497a-15f7c06b-ad7dba06-c4c599fe', 'text/plain') | |
| 791 | |
| 792 e = DoGet(_REMOTE, '/exports') | |
| 793 self.assertEqual(2, len(e['Exports'])) | |
| 794 self.assertTrue(e['Done']) | |
| 795 self.assertEqual(e['Exports'][-1]['Seq'], e['Last']) | |
| 796 seqSeries = e['Last'] | |
| 797 self.assertNotEqual(seqInstance, seqSeries) | |
| 798 e = DoGet(_REMOTE, '/exports?limit=1&since=0') | |
| 799 self.assertEqual(1, len(e['Exports'])) | |
| 800 self.assertFalse(e['Done']) | |
| 801 self.assertEqual(e['Exports'][-1]['Seq'], seqInstance) | |
| 802 e = DoGet(_REMOTE, '/exports?limit=1&since=' + str(seqInstance)) | |
| 803 self.assertEqual(1, len(e['Exports'])) | |
| 804 self.assertTrue(e['Done']) | |
| 805 self.assertEqual(e['Exports'][-1]['Seq'], seqSeries) | |
| 806 e = DoGet(_REMOTE, '/exports?last') | |
| 807 self.assertEqual(1, len(e['Exports'])) | |
| 808 self.assertTrue(e['Done']) | |
| 809 self.assertEqual(e['Exports'][-1]['Seq'], seqSeries) | |
| 810 | |
| 811 # Export the study | |
| 812 j = DoPost(_REMOTE, '/modalities/orthanctest/store', 'b9c08539-26f93bde-c81ab0d7-bffaf2cb-a4d0bdd0', 'text/plain') | |
| 813 seqStudy = DoGet(_REMOTE, '/exports')['Last'] | |
| 814 | |
| 815 # Export the patient | |
| 816 j = DoPost(_REMOTE, '/modalities/orthanctest/store', '6816cb19-844d5aee-85245eba-28e841e6-2414fae2', 'text/plain') | |
| 817 self.assertEqual(1, len(DoGet(_LOCAL, '/patients'))) | |
| 818 self.assertEqual(1, len(DoGet(_LOCAL, '/studies'))) | |
| 819 self.assertEqual(1, len(DoGet(_LOCAL, '/series'))) | |
| 820 self.assertEqual(1, len(DoGet(_LOCAL, '/instances'))) | |
| 821 | |
| 822 e = DoGet(_REMOTE, '/exports') | |
| 823 self.assertEqual(4, len(e['Exports'])) | |
| 824 self.assertTrue(e['Done']) | |
| 825 self.assertEqual(e['Exports'][-1]['Seq'], e['Last']) | |
| 826 seqPatient = e['Last'] | |
| 827 self.assertNotEqual(seqInstance, seqSeries) | |
| 828 self.assertNotEqual(seqSeries, seqStudy) | |
| 829 self.assertNotEqual(seqStudy, seqPatient) | |
| 830 self.assertTrue(seqInstance < seqSeries) | |
| 831 self.assertTrue(seqSeries < seqStudy) | |
| 832 self.assertTrue(seqStudy < seqPatient) | |
| 833 e = DoGet(_REMOTE, '/exports?limit=1&since=0') | |
| 834 self.assertEqual(1, len(e['Exports'])) | |
| 835 self.assertFalse(e['Done']) | |
| 836 self.assertEqual(e['Exports'][-1]['Seq'], seqInstance) | |
| 837 e = DoGet(_REMOTE, '/exports?limit=1&since=' + str(seqInstance)) | |
| 838 self.assertEqual(1, len(e['Exports'])) | |
| 839 self.assertFalse(e['Done']) | |
| 840 self.assertEqual(e['Exports'][-1]['Seq'], seqSeries) | |
| 841 e = DoGet(_REMOTE, '/exports?limit=1&since=' + str(seqSeries)) | |
| 842 self.assertEqual(1, len(e['Exports'])) | |
| 843 self.assertFalse(e['Done']) | |
| 844 self.assertEqual(e['Exports'][-1]['Seq'], seqStudy) | |
| 845 e = DoGet(_REMOTE, '/exports?limit=1&since=' + str(seqStudy)) | |
| 846 self.assertEqual(1, len(e['Exports'])) | |
| 847 self.assertTrue(e['Done']) | |
| 848 self.assertEqual(e['Exports'][-1]['Seq'], seqPatient) | |
| 849 e = DoGet(_REMOTE, '/exports?last') | |
| 850 self.assertEqual(1, len(e['Exports'])) | |
| 851 self.assertTrue(e['Done']) | |
| 852 self.assertEqual(e['Exports'][-1]['Seq'], seqPatient) | |
| 853 | |
| 854 | |
| 855 # Check the content of the logged information | |
| 856 e = DoGet(_REMOTE, '/exports')['Exports'] | |
| 857 | |
| 858 if 'PatientID' in e[0]: | |
| 859 # Since Orthanc 0.8.6 | |
| 860 patient = 'PatientID' | |
| 861 study = 'StudyInstanceUID' | |
| 862 series = 'SeriesInstanceUID' | |
| 863 instance = 'SOPInstanceUID' | |
| 864 else: | |
| 865 # Up to Orthanc 0.8.5 | |
| 866 patient = 'PatientId' | |
| 867 study = 'StudyInstanceUid' | |
| 868 series = 'SeriesInstanceUid' | |
| 869 instance = 'SopInstanceUid' | |
| 870 | |
| 871 for k in range(4): | |
| 872 self.assertTrue('Date' in e[k]) | |
| 873 self.assertTrue('Seq' in e[k]) | |
| 874 self.assertEqual('orthanctest', e[k]['RemoteModality']) | |
| 875 | |
| 876 self.assertEqual(10, len(e[0])) | |
| 877 self.assertEqual('Instance', e[0]['ResourceType']) | |
| 878 self.assertEqual('66a662ce-7430e543-bad44d47-0dc5a943-ec7a538d', e[0]['ID']) | |
| 879 self.assertEqual('/instances/66a662ce-7430e543-bad44d47-0dc5a943-ec7a538d', e[0]['Path']) | |
| 880 self.assertEqual('1.2.840.113619.2.176.2025.1499492.7040.1171286242.109', e[0][instance]) | |
| 881 self.assertEqual('1.2.840.113619.2.176.2025.1499492.7391.1171285944.394', e[0][series]) | |
| 882 self.assertEqual('1.2.840.113619.2.176.2025.1499492.7391.1171285944.390', e[0][study]) | |
| 883 self.assertEqual('ozp00SjY2xG', e[0][patient]) | |
| 884 | |
| 885 self.assertEqual(9, len(e[1])) | |
| 886 self.assertEqual('Series', e[1]['ResourceType']) | |
| 887 self.assertEqual('f2635388-f01d497a-15f7c06b-ad7dba06-c4c599fe', e[1]['ID']) | |
| 888 self.assertEqual('/series/f2635388-f01d497a-15f7c06b-ad7dba06-c4c599fe', e[1]['Path']) | |
| 889 self.assertEqual('1.2.840.113619.2.176.2025.1499492.7391.1171285944.394', e[1][series]) | |
| 890 self.assertEqual('1.2.840.113619.2.176.2025.1499492.7391.1171285944.390', e[1][study]) | |
| 891 self.assertEqual('ozp00SjY2xG', e[1][patient]) | |
| 892 | |
| 893 self.assertEqual(8, len(e[2])) | |
| 894 self.assertEqual('Study', e[2]['ResourceType']) | |
| 895 self.assertEqual('b9c08539-26f93bde-c81ab0d7-bffaf2cb-a4d0bdd0', e[2]['ID']) | |
| 896 self.assertEqual('/studies/b9c08539-26f93bde-c81ab0d7-bffaf2cb-a4d0bdd0', e[2]['Path']) | |
| 897 self.assertEqual('1.2.840.113619.2.176.2025.1499492.7391.1171285944.390', e[2][study]) | |
| 898 self.assertEqual('ozp00SjY2xG', e[2][patient]) | |
| 899 | |
| 900 self.assertEqual(7, len(e[3])) | |
| 901 self.assertEqual('Patient', e[3]['ResourceType']) | |
| 902 self.assertEqual('6816cb19-844d5aee-85245eba-28e841e6-2414fae2', e[3]['ID']) | |
| 903 self.assertEqual('/patients/6816cb19-844d5aee-85245eba-28e841e6-2414fae2', e[3]['Path']) | |
| 904 self.assertEqual('ozp00SjY2xG', e[3][patient]) | |
| 905 | |
| 906 DropOrthanc(_REMOTE) | |
| 907 self.assertEqual(0, len(DoGet(_REMOTE, '/exports')['Exports'])) | |
| 908 | |
| 909 | |
| 910 def test_store_peer(self): | |
| 911 self.assertEqual(0, len(DoGet(_LOCAL, '/exports')['Exports'])) | |
| 912 self.assertEqual(0, len(DoGet(_REMOTE, '/exports')['Exports'])) | |
| 913 | |
| 914 i = UploadInstance(_REMOTE, 'DummyCT.dcm')['ID'] | |
| 915 self.assertEqual(0, len(DoGet(_LOCAL, '/patients'))) | |
| 916 self.assertEqual(1, len(DoGet(_REMOTE, '/patients'))) | |
| 917 | |
| 918 j = DoPost(_REMOTE, '/peers/peer/store', str(i), 'text/plain') | |
| 919 self.assertEqual(1, len(DoGet(_LOCAL, '/patients'))) | |
| 920 self.assertEqual(1, len(DoGet(_REMOTE, '/patients'))) | |
| 921 | |
| 922 self.assertEqual(1, len(DoGet(_REMOTE, '/exports')['Exports'])) | |
| 923 | |
| 924 DropOrthanc(_REMOTE) | |
| 925 self.assertEqual(0, len(DoGet(_REMOTE, '/exports')['Exports'])) | |
| 926 | |
| 927 | |
| 928 def test_bulk_storescu(self): | |
| 929 self.assertEqual(0, len(DoGet(_LOCAL, '/patients'))) | |
| 930 | |
| 931 a = UploadInstance(_REMOTE, 'Knee/T1/IM-0001-0001.dcm') | |
| 932 b = UploadInstance(_REMOTE, 'Knee/T2/IM-0001-0001.dcm') | |
| 933 | |
| 934 j = DoPost(_REMOTE, '/modalities/orthanctest/store', [ a['ID'], b['ID'] ], 'application/json') | |
| 935 self.assertEqual(2, len(DoGet(_LOCAL, '/instances'))) | |
| 936 | |
| 937 DropOrthanc(_LOCAL) | |
| 938 | |
| 939 # Send using patient's UUID | |
| 940 self.assertEqual(0, len(DoGet(_LOCAL, '/instances'))) | |
| 941 j = DoPost(_REMOTE, '/modalities/orthanctest/store', | |
| 942 [ 'ca29faea-b6a0e17f-067743a1-8b778011-a48b2a17' ], 'application/json') | |
| 943 self.assertEqual(2, len(DoGet(_LOCAL, '/instances'))) | |
| 944 | |
| 945 | |
| 946 def test_color(self): | |
| 947 i = UploadInstance(_REMOTE, 'ColorTestMalaterre.dcm')['ID'] | |
| 948 im = GetImage(_REMOTE, '/instances/%s/preview' % i) | |
| 949 self.assertEqual("RGB", im.mode) | |
| 950 self.assertEqual(41, im.size[0]) | |
| 951 self.assertEqual(41, im.size[1]) | |
| 952 | |
| 953 # http://effbot.org/zone/pil-comparing-images.htm | |
| 13 | 954 truth = Image.open(GetDatabasePath('ColorTestMalaterre.png')) |
| 11 | 955 self.assertTrue(ImageChops.difference(im, truth).getbbox() is None) |
| 956 | |
| 957 | |
| 12 | 958 def test_faking_ruby_put(self): |
| 959 UploadInstance(_REMOTE, 'Knee/T1/IM-0001-0001.dcm') | |
| 960 UploadInstance(_REMOTE, 'Brainix/Flair/IM-0001-0001.dcm') | |
| 961 self.assertEqual(2, len(DoGet(_REMOTE, '/patients'))) | |
| 962 a = DoGet(_REMOTE, '/patients')[0] | |
| 963 b = DoGet(_REMOTE, '/patients')[1] | |
| 964 self.assertEqual(0, DoGet(_REMOTE, '/patients/%s/protected' % a)) | |
| 965 DoGet(_REMOTE, '/patients/%s/protected' % a, data = { '_method' : 'PUT' }, body = '0') | |
| 966 self.assertEqual(0, DoGet(_REMOTE, '/patients/%s/protected' % a)) | |
| 967 DoGet(_REMOTE, '/patients/%s/protected' % a, data = { '_method' : 'PUT' }, body = '1') | |
| 968 self.assertEqual(1, DoGet(_REMOTE, '/patients/%s/protected' % a)) | |
| 969 DoGet(_REMOTE, '/patients/%s/protected' % a, data = { '_method' : 'PUT' }, body = '0') | |
| 970 self.assertEqual(0, DoGet(_REMOTE, '/patients/%s/protected' % a)) | |
| 971 | |
| 972 | |
| 973 def test_faking_ruby_delete(self): | |
| 974 UploadInstance(_REMOTE, 'Knee/T1/IM-0001-0001.dcm') | |
| 975 UploadInstance(_REMOTE, 'Brainix/Flair/IM-0001-0001.dcm') | |
| 976 self.assertEqual(2, len(DoGet(_REMOTE, '/patients'))) | |
| 977 a = DoGet(_REMOTE, '/patients')[0] | |
| 978 b = DoGet(_REMOTE, '/patients')[1] | |
| 979 DoGet(_REMOTE, '/patients/%s' % a, data = { '_method' : 'DELETE' }) | |
| 980 self.assertEqual(1, len(DoGet(_REMOTE, '/patients'))) | |
| 981 DoGet(_REMOTE, '/patients/%s' % b, data = { '_method' : 'DELETE' }) | |
| 982 self.assertEqual(0, len(DoGet(_REMOTE, '/patients'))) | |
| 983 | |
| 984 | |
| 985 def test_faking_google_put(self): | |
| 986 UploadInstance(_REMOTE, 'Knee/T1/IM-0001-0001.dcm') | |
| 987 UploadInstance(_REMOTE, 'Brainix/Flair/IM-0001-0001.dcm') | |
| 988 self.assertEqual(2, len(DoGet(_REMOTE, '/patients'))) | |
| 989 a = DoGet(_REMOTE, '/patients')[0] | |
| 990 b = DoGet(_REMOTE, '/patients')[1] | |
| 991 self.assertEqual(0, DoGet(_REMOTE, '/patients/%s/protected' % a)) | |
| 992 DoPost(_REMOTE, '/patients/%s/protected' % a, headers = { 'X-HTTP-Method-Override' : 'PUT' }, data = '0') | |
| 993 self.assertEqual(0, DoGet(_REMOTE, '/patients/%s/protected' % a)) | |
| 994 DoPost(_REMOTE, '/patients/%s/protected' % a, headers = { 'X-HTTP-Method-Override' : 'PUT' }, data = '1') | |
| 995 self.assertEqual(1, DoGet(_REMOTE, '/patients/%s/protected' % a)) | |
| 996 DoPost(_REMOTE, '/patients/%s/protected' % a, headers = { 'X-HTTP-Method-Override' : 'PUT' }, data = '0') | |
| 997 self.assertEqual(0, DoGet(_REMOTE, '/patients/%s/protected' % a)) | |
| 998 | |
| 999 | |
| 1000 def test_faking_google_delete(self): | |
| 1001 UploadInstance(_REMOTE, 'Knee/T1/IM-0001-0001.dcm') | |
| 1002 UploadInstance(_REMOTE, 'Brainix/Flair/IM-0001-0001.dcm') | |
| 1003 self.assertEqual(2, len(DoGet(_REMOTE, '/patients'))) | |
| 1004 a = DoGet(_REMOTE, '/patients')[0] | |
| 1005 b = DoGet(_REMOTE, '/patients')[1] | |
| 1006 DoPost(_REMOTE, '/patients/%s' % a, headers = { 'X-HTTP-Method-Override' : 'DELETE' }) | |
| 1007 self.assertEqual(1, len(DoGet(_REMOTE, '/patients'))) | |
| 1008 DoPost(_REMOTE, '/patients/%s' % b, headers = { 'X-HTTP-Method-Override' : 'DELETE' }) | |
| 1009 self.assertEqual(0, len(DoGet(_REMOTE, '/patients'))) | |
| 1010 | |
| 1011 | |
| 1012 def test_lua(self): | |
| 1013 self.assertEqual(42, DoPost(_REMOTE, '/tools/execute-script', 'print(42)')) | |
| 1014 self.assertTrue(IsDefinedInLua(_REMOTE, 'PrintRecursive')) | |
| 1015 self.assertFalse(IsDefinedInLua(_REMOTE, 'HelloWorld')) | |
| 1016 | |
| 1017 | |
| 1018 def test_metadata(self): | |
| 1019 UploadInstance(_REMOTE, 'Knee/T1/IM-0001-0001.dcm') | |
| 1020 p = DoGet(_REMOTE, '/patients')[0] | |
| 1021 i = DoGet(_REMOTE, '/instances')[0] | |
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1022 series = DoGet(_REMOTE, '/series')[0] |
| 12 | 1023 |
| 1024 m = DoGet(_REMOTE, '/patients/%s/metadata' % p) | |
| 1025 self.assertEqual(1, len(m)) | |
| 1026 self.assertEqual('LastUpdate', m[0]) | |
| 1027 | |
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1028 # The lines below failed on Orthanc <= 1.8.2 |
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1029 self.assertRaises(Exception, lambda: DoGet(_REMOTE, '/studies/%s/metadata' % p)) |
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1030 self.assertRaises(Exception, lambda: DoGet(_REMOTE, '/series/%s/metadata' % p)) |
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1031 self.assertRaises(Exception, lambda: DoGet(_REMOTE, '/instances/%s/metadata' % p)) |
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1032 |
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1033 m = DoGet(_REMOTE, '/studies/%s/metadata' % DoGet(_REMOTE, '/studies')[0]) |
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1034 self.assertEqual(1, len(m)) |
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1035 self.assertEqual('LastUpdate', m[0]) |
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1036 |
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1037 m = DoGet(_REMOTE, '/series/%s/metadata' % series) |
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1038 self.assertEqual(2, len(m)) |
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1039 self.assertTrue('LastUpdate' in m) |
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1040 |
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1041 # New in Orthanc 1.9.0 |
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1042 self.assertTrue('RemoteAET' in m) |
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1043 self.assertEqual(DoGet(_REMOTE, '/series/%s/metadata/RemoteAET' % series), '') # None, received by REST API |
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1044 |
| 12 | 1045 m = DoGet(_REMOTE, '/instances/%s/metadata' % i) |
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1046 self.assertEqual(9, len(m)) |
| 12 | 1047 self.assertTrue('IndexInSeries' in m) |
| 1048 self.assertTrue('ReceptionDate' in m) | |
| 1049 self.assertTrue('RemoteAET' in m) | |
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1050 self.assertTrue('Origin' in m) |
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1051 self.assertTrue('TransferSyntax' in m) |
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1052 self.assertTrue('SopClassUid' in m) |
| 145 | 1053 self.assertTrue('RemoteIP' in m) |
| 1054 self.assertTrue('HttpUsername' in m) | |
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1055 self.assertTrue('PixelDataOffset' in m) # New in Orthanc 1.9.1 |
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1056 self.assertEqual(DoGet(_REMOTE, '/instances/%s/metadata/IndexInSeries' % i), 1) |
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1057 self.assertEqual(DoGet(_REMOTE, '/instances/%s/metadata/Origin' % i), 'RestApi') |
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1058 self.assertEqual(DoGet(_REMOTE, '/instances/%s/metadata/RemoteAET' % i), '') # None, received by REST API |
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1059 self.assertEqual(DoGet(_REMOTE, '/instances/%s/metadata/TransferSyntax' % i), '1.2.840.10008.1.2.4.91') # JPEG2k |
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1060 self.assertEqual(DoGet(_REMOTE, '/instances/%s/metadata/SopClassUid' % i), '1.2.840.10008.5.1.4.1.1.4') |
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1061 self.assertEqual(int(DoGet(_REMOTE, '/instances/%s/metadata/PixelDataOffset' % i)), 0x0c78) |
| 12 | 1062 |
| 1063 # Play with custom metadata | |
| 1064 DoPut(_REMOTE, '/patients/%s/metadata/5555' % p, 'coucou') | |
| 1065 m = DoGet(_REMOTE, '/patients/%s/metadata' % p) | |
| 1066 self.assertEqual(2, len(m)) | |
| 1067 self.assertTrue('LastUpdate' in m) | |
| 1068 self.assertTrue('5555' in m) | |
| 1069 self.assertEqual('coucou', DoGet(_REMOTE, '/patients/%s/metadata/5555' % p)) | |
| 1070 DoPut(_REMOTE, '/patients/%s/metadata/5555' % p, 'hello') | |
| 1071 self.assertEqual('hello', DoGet(_REMOTE, '/patients/%s/metadata/5555' % p)) | |
| 1072 DoDelete(_REMOTE, '/patients/%s/metadata/5555' % p) | |
| 1073 m = DoGet(_REMOTE, '/patients/%s/metadata' % p) | |
| 1074 self.assertEqual(1, len(m)) | |
| 1075 self.assertTrue('LastUpdate' in m) | |
| 13 | 1076 |
| 1077 | |
| 1078 def test_statistics(self): | |
| 1079 # Upload 16 instances | |
| 1080 for i in range(4): | |
| 1081 UploadInstance(_REMOTE, 'Brainix/Flair/IM-0001-000%d.dcm' % (i + 1)) | |
| 1082 UploadInstance(_REMOTE, 'Brainix/Epi/IM-0001-000%d.dcm' % (i + 1)) | |
| 1083 UploadInstance(_REMOTE, 'Knee/T1/IM-0001-000%d.dcm' % (i + 1)) | |
| 1084 UploadInstance(_REMOTE, 'Knee/T2/IM-0001-000%d.dcm' % (i + 1)) | |
| 1085 | |
| 1086 s = DoGet(_REMOTE, '/statistics') | |
| 1087 self.assertEqual(16, s['CountInstances']) | |
| 1088 self.assertEqual(2, s['CountPatients']) | |
| 1089 self.assertEqual(2, s['CountStudies']) | |
| 1090 self.assertEqual(4, s['CountSeries']) | |
| 1091 d = int(s['TotalUncompressedSize']) | |
| 1092 | |
| 1093 e = 0 | |
| 1094 for patient in DoGet(_REMOTE, '/patients'): | |
| 1095 s = DoGet(_REMOTE, '/patients/%s/statistics' % patient) | |
| 1096 self.assertEqual(8, s['CountInstances']) | |
| 1097 self.assertEqual(1, s['CountStudies']) | |
| 1098 self.assertEqual(2, s['CountSeries']) | |
| 1099 e += int(s['UncompressedSize']) | |
| 1100 | |
| 1101 for study in DoGet(_REMOTE, '/studies'): | |
| 1102 s = DoGet(_REMOTE, '/studies/%s/statistics' % study) | |
| 1103 self.assertEqual(8, s['CountInstances']) | |
| 1104 self.assertEqual(2, s['CountSeries']) | |
| 1105 e += int(s['UncompressedSize']) | |
| 1106 | |
| 1107 for series in DoGet(_REMOTE, '/series'): | |
| 1108 s = DoGet(_REMOTE, '/series/%s/statistics' % series) | |
| 1109 self.assertEqual(4, s['CountInstances']) | |
| 1110 e += int(s['UncompressedSize']) | |
| 1111 | |
| 1112 self.assertEqual(3 * d, e) | |
| 1113 | |
| 1114 | |
| 1115 def test_custom_attachment(self): | |
| 1116 UploadInstance(_REMOTE, 'Brainix/Flair/IM-0001-0001.dcm') | |
| 1117 patient = DoGet(_REMOTE, '/patients')[0] | |
| 1118 instance = DoGet(_REMOTE, '/instances')[0] | |
| 1119 size = int(DoGet(_REMOTE, '/patients/%s/statistics' % patient)['DiskSize']) | |
| 1120 self.assertEqual(size, int(DoGet(_REMOTE, '/statistics')['TotalDiskSize'])) | |
| 1121 | |
| 1122 self.assertEqual(0, len(DoGet(_REMOTE, '/patients/%s/attachments' % patient))) | |
| 1123 self.assertEqual(2, len(DoGet(_REMOTE, '/instances/%s/attachments' % instance))) | |
| 1124 self.assertTrue('dicom' in DoGet(_REMOTE, '/instances/%s/attachments' % instance)) | |
| 1125 self.assertTrue('dicom-as-json' in DoGet(_REMOTE, '/instances/%s/attachments' % instance)) | |
| 1126 | |
| 1127 self.assertRaises(Exception, lambda: DoPut(_REMOTE, '/patients/%s/attachments/22' % patient, 'hello')) | |
| 1128 hello = 'hellohellohellohellohellohellohellohellohello' | |
| 1129 DoPut(_REMOTE, '/patients/%s/attachments/1025' % patient, hello) | |
| 1130 self.assertEqual(int(DoGet(_REMOTE, '/patients/%s/statistics' % patient)['DiskSize']), | |
| 1131 int(DoGet(_REMOTE, '/statistics')['TotalDiskSize'])) | |
| 1132 self.assertEqual(int(DoGet(_REMOTE, '/patients/%s/statistics' % patient)['DiskSize']), | |
| 1133 size + int(DoGet(_REMOTE, '/patients/%s/attachments/1025/compressed-size' % patient))) | |
| 1134 | |
| 1135 DoPut(_REMOTE, '/patients/%s/attachments/1026' % patient, 'world') | |
| 1136 self.assertEqual(int(DoGet(_REMOTE, '/patients/%s/statistics' % patient)['DiskSize']), | |
| 1137 int(DoGet(_REMOTE, '/statistics')['TotalDiskSize'])) | |
| 1138 self.assertEqual(int(DoGet(_REMOTE, '/patients/%s/statistics' % patient)['DiskSize']), | |
| 1139 size + | |
| 1140 int(DoGet(_REMOTE, '/patients/%s/attachments/1025/compressed-size' % patient)) + | |
| 1141 int(DoGet(_REMOTE, '/patients/%s/attachments/1026/compressed-size' % patient))) | |
| 1142 | |
| 1143 self.assertEqual(2, len(DoGet(_REMOTE, '/patients/%s/attachments' % patient))) | |
| 1144 self.assertEqual(hello, DoGet(_REMOTE, '/patients/%s/attachments/1025/data' % patient)) | |
| 1145 self.assertEqual('world', DoGet(_REMOTE, '/patients/%s/attachments/1026/data' % patient)) | |
| 1146 DoPost(_REMOTE, '/patients/%s/attachments/1025/verify-md5' % patient) | |
| 1147 DoPost(_REMOTE, '/patients/%s/attachments/1026/verify-md5' % patient) | |
| 1148 DoPut(_REMOTE, '/patients/%s/attachments/1026' % patient, 'world2') | |
| 1149 self.assertEqual('world2', DoGet(_REMOTE, '/patients/%s/attachments/1026/data' % patient)) | |
| 1150 | |
| 1151 self.assertRaises(Exception, lambda: DoDelete(_REMOTE, '/instances/%s/attachments/dicom' % instance)) | |
| 1152 DoDelete(_REMOTE, '/patients/%s/attachments/1025' % patient) | |
| 1153 self.assertEqual(int(DoGet(_REMOTE, '/patients/%s/statistics' % patient)['DiskSize']), | |
| 1154 int(DoGet(_REMOTE, '/statistics')['TotalDiskSize'])) | |
| 1155 self.assertEqual(int(DoGet(_REMOTE, '/patients/%s/statistics' % patient)['DiskSize']), | |
| 1156 size + int(DoGet(_REMOTE, '/patients/%s/attachments/1026/compressed-size' % patient))) | |
| 1157 | |
| 1158 self.assertEqual(1, len(DoGet(_REMOTE, '/patients/%s/attachments' % patient))) | |
| 1159 DoDelete(_REMOTE, '/patients/%s/attachments/1026' % patient) | |
| 1160 self.assertEqual(0, len(DoGet(_REMOTE, '/patients/%s/attachments' % patient))) | |
| 1161 | |
| 1162 self.assertEqual(int(DoGet(_REMOTE, '/patients/%s/statistics' % patient)['DiskSize']), size) | |
| 1163 self.assertEqual(size, int(DoGet(_REMOTE, '/statistics')['TotalDiskSize'])) | |
| 1164 | |
| 1165 | |
| 1166 def test_incoming_storescu(self): | |
| 1167 self.assertEqual(0, len(DoGet(_REMOTE, '/patients'))) | |
| 45 | 1168 subprocess.check_call([ FindExecutable('storescu'), |
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1169 _REMOTE['Server'], str(_REMOTE['DicomPort']), |
| 13 | 1170 GetDatabasePath('ColorTestImageJ.dcm') ]) |
| 1171 self.assertEqual(1, len(DoGet(_REMOTE, '/patients'))) | |
| 1172 | |
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1173 i = DoGet(_REMOTE, '/instances') |
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1174 self.assertEqual(1, len(i)) |
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1175 m = DoGet(_REMOTE, '/instances/%s/metadata' % i[0]) |
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1176 self.assertEqual(9, len(m)) |
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1177 self.assertTrue('IndexInSeries' in m) |
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1178 self.assertTrue('ReceptionDate' in m) |
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1179 self.assertTrue('RemoteAET' in m) |
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1180 self.assertTrue('Origin' in m) |
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1181 self.assertTrue('TransferSyntax' in m) |
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1182 self.assertTrue('SopClassUid' in m) |
| 145 | 1183 self.assertTrue('RemoteIP' in m) |
| 1184 self.assertTrue('CalledAET' in m) | |
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1186 self.assertEqual(DoGet(_REMOTE, '/instances/%s/metadata/IndexInSeries' % i[0]), 1) |
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1187 self.assertEqual(DoGet(_REMOTE, '/instances/%s/metadata/Origin' % i[0]), 'DicomProtocol') |
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1188 self.assertEqual(DoGet(_REMOTE, '/instances/%s/metadata/RemoteAET' % i[0]), 'STORESCU') |
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1189 self.assertEqual(DoGet(_REMOTE, '/instances/%s/metadata/TransferSyntax' % i[0]), '1.2.840.10008.1.2.1') |
|
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1190 self.assertEqual(DoGet(_REMOTE, '/instances/%s/metadata/SopClassUid' % i[0]), '1.2.840.10008.5.1.4.1.1.7') |
|
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1191 |
|
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1192 series = DoGet(_REMOTE, '/series')[0] |
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1193 m = DoGet(_REMOTE, '/series/%s/metadata' % series) |
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1194 self.assertEqual(2, len(m)) |
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1195 self.assertTrue('LastUpdate' in m) |
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1196 self.assertTrue('RemoteAET' in m) |
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1197 self.assertEqual(DoGet(_REMOTE, '/series/%s/metadata/RemoteAET' % series), 'STORESCU') |
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1198 self.assertEqual(DoGet(_REMOTE, '/series/%s/metadata/LastUpdate' % series), |
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1199 DoGet(_REMOTE, '/instances/%s/metadata/ReceptionDate' % i[0])) |
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1200 |
| 13 | 1201 |
| 1202 def test_incoming_findscu(self): | |
| 1203 UploadInstance(_REMOTE, 'Multiframe.dcm') | |
| 1204 UploadInstance(_REMOTE, 'ColorTestImageJ.dcm') | |
| 1205 | |
| 1206 i = CallFindScu([ '-k', '0008,0052=PATIENT', '-k', '0010,0010' ]) | |
| 1207 patientNames = re.findall('\(0010,0010\).*?\[(.*?)\]', i) | |
| 1208 self.assertEqual(2, len(patientNames)) | |
| 1209 self.assertTrue('Test Patient BG ' in patientNames) | |
| 1210 self.assertTrue('Anonymized' in patientNames) | |
| 1211 | |
| 1212 i = CallFindScu([ '-k', '0008,0052=SERIES', '-k', '0008,0021' ]) | |
| 1213 series = re.findall('\(0008,0021\).*?\[\s*(.*?)\s*\]', i) | |
| 1214 self.assertEqual(2, len(series)) | |
| 1215 self.assertTrue('20070208' in series) | |
| 1216 self.assertTrue('19980312' in series) | |
| 1217 | |
|
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1218 i = CallFindScu([ '-k', '0008,0052=SERIES', '-k', '0008,0021', '-k', 'Modality=MR\\XA' ]) |
|
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1219 series = re.findall('\(0008,0021\).*?\[\s*(.*?)\s*\]', i) |
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1220 self.assertEqual(1, len(series)) |
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1221 self.assertTrue('19980312' in series) |
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1222 |
| 13 | 1223 i = CallFindScu([ '-k', '0008,0052=SERIES', '-k', 'PatientName=Anonymized' ]) |
| 1224 series = re.findall('\(0010,0010\).*?\[\s*(.*?)\s*\]', i) | |
| 1225 self.assertEqual(1, len(series)) | |
| 1226 | |
| 1227 # Test the "CaseSentitivePN" flag (false by default) | |
| 1228 i = CallFindScu([ '-k', '0008,0052=SERIES', '-k', 'PatientName=anonymized' ]) | |
| 1229 series = re.findall('\(0010,0010\).*?\[\s*(.*?)\s*\]', i) | |
| 1230 self.assertEqual(1, len(series)) | |
|
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|
1231 |
| 70 | 1232 # Test range search (buggy if Orthanc <= 0.9.6) |
| 1233 i = CallFindScu([ '-k', '0008,0052=STUDY', '-k', 'StudyDate=19980312-' ]) | |
| 1234 studies = re.findall('\(0008,0020\).*?\[\s*(.*?)\s*\]', i) | |
| 1235 self.assertEqual(2, len(studies)) | |
| 1236 self.assertTrue('20070208' in studies) | |
| 1237 self.assertTrue('19980312' in studies) | |
| 1238 i = CallFindScu([ '-k', '0008,0052=STUDY', '-k', 'StudyDate=19980312-19980312' ]) | |
| 1239 studies = re.findall('\(0008,0020\).*?\[\s*(.*?)\s*\]', i) | |
| 1240 self.assertEqual(1, len(studies)) | |
| 1241 self.assertTrue('19980312' in studies) | |
| 1242 i = CallFindScu([ '-k', '0008,0052=STUDY', '-k', 'StudyDate=-19980312' ]) | |
| 1243 studies = re.findall('\(0008,0020\).*?\[\s*(.*?)\s*\]', i) | |
| 1244 self.assertEqual(1, len(studies)) | |
| 1245 self.assertTrue('19980312' in studies) | |
|
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1246 |
|
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1247 # Test that "Retrieve AE Title (0008,0054)" is present, which |
|
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1248 # was *not* the case in Orthanc <= 1.7.2 |
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1249 i = CallFindScu([ '-k', '0008,0052=INSTANCE' ]) |
|
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|
1250 instances = re.findall('\(0008,0054\).*?\[\s*(.*?)\s*\]', i) |
|
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1251 self.assertEqual(2, len(instances)) |
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1252 self.assertEqual('ORTHANC', instances[0].strip()) |
|
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1253 self.assertEqual('ORTHANC', instances[1].strip()) |
| 13 | 1254 |
| 1255 | |
|
191
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1256 def test_incoming_findscu_2(self): |
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1257 # This test fails if "LookupMode_DatabaseOnly" is used |
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1258 # (sequences are not available in this mode, and only main |
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1259 # DICOM tags are returned) |
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1260 UploadInstance(_REMOTE, 'Multiframe.dcm') |
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1261 UploadInstance(_REMOTE, 'ColorTestImageJ.dcm') |
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1262 |
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1263 # Test returning sequence values (only since Orthanc 0.9.5) |
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1264 i = CallFindScu([ '-k', '0008,0052=SERIES', '-k', '0008,2112' ]) # "ColorTestImageJ" has this sequence tag |
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1265 sequences = re.findall('\(0008,2112\)', i) |
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1266 self.assertEqual(1, len(sequences)) |
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1267 |
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1268 # Test returning a non-main DICOM tag, |
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1269 # "SecondaryCaptureDeviceID" (0018,1010), whose value is |
|
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1270 # "MEDPC" in "ColorTestImageJ.dcm" |
|
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1271 i = CallFindScu([ '-k', '0008,0052=SERIES', '-k', '0018,1010' ]) |
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1272 tags = re.findall('\(0018,1010\).*MEDPC', i) |
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1273 self.assertEqual(1, len(tags)) |
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1274 |
|
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1275 |
|
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1276 def test_incoming_findscu_3(self): |
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1277 # This test fails if "LookupMode_DatabaseOnly" or |
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1278 # "LookupMode_DiskOnAnswer" is used, as |
|
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1279 # "SecondaryCaptureDeviceID" (0018,1010) is not a main DICOM |
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1280 # tag, as thus a constraint cannot be applied to it |
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1281 UploadInstance(_REMOTE, 'ColorTestImageJ.dcm') |
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1282 |
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1283 i = CallFindScu([ '-k', '0008,0052=SERIES', '-k', '0018,1010=MEDPC' ]) |
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1284 sequences = re.findall('\(0018,1010\)', i) |
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1285 self.assertEqual(1, len(sequences)) |
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1286 |
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1287 |
| 13 | 1288 def test_incoming_movescu(self): |
| 1289 UploadInstance(_REMOTE, 'Multiframe.dcm') | |
|
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1290 |
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1291 # No matching patient, so no job is created |
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1292 self.assertEqual(0, len(DoGet(_LOCAL, '/patients'))) |
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1293 CallMoveScu([ '--patient', '-k', '0008,0052=PATIENT', '-k', 'PatientID=none' ]) |
| 13 | 1294 self.assertEqual(0, len(DoGet(_LOCAL, '/patients'))) |
|
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1295 |
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1296 # 1 Matching patient, track the job |
| 138 | 1297 self.assertTrue(MonitorJob(_REMOTE, lambda: CallMoveScu([ |
| 1298 '--patient', | |
| 1299 '-k', '0008,0052=PATIENT', | |
| 1300 '-k', 'PatientID=12345678' | |
| 1301 ]))) | |
| 13 | 1302 self.assertEqual(1, len(DoGet(_LOCAL, '/patients'))) |
| 1303 | |
| 1304 | |
| 1305 def test_findscu(self): | |
| 1306 i = UploadInstance(_REMOTE, 'DummyCT.dcm')['ID'] | |
| 1307 j = UploadInstance(_REMOTE, 'Issue22.dcm')['ID'] | |
| 1308 k = UploadInstance(_REMOTE, 'ColorTestImageJ.dcm')['ID'] | |
| 1309 DoPost(_REMOTE, '/modalities/orthanctest/store', str(i), 'text/plain') | |
| 1310 | |
| 1311 # Test the "find-patient" level | |
| 1312 p = DoPost(_REMOTE, '/modalities/orthanctest/find-patient', { }) | |
| 1313 self.assertEqual(1, len(p)) | |
| 1314 self.assertEqual('ozp00SjY2xG', p[0]['PatientID']) | |
| 1315 | |
| 1316 # Test wildcards constraints. The "LO" value representation | |
| 1317 # for PatientID is always case-sensitive, but the "PN" for | |
| 1318 # PatientName might depend on the implementation: | |
| 1319 # "GenerateConfigurationForTests.py" will force it to be case | |
| 1320 # insensitive (which was the default until Orthanc 0.8.6). | |
| 1321 p = DoPost(_REMOTE, '/modalities/orthanctest/find-patient', { 'PatientName' : 'K*' }) | |
| 1322 self.assertEqual(1, len(p)) | |
| 1323 | |
| 1324 p = DoPost(_REMOTE, '/modalities/orthanctest/find-patient', { 'PatientName' : 'k*' }) | |
| 1325 self.assertEqual(1, len(p)) | |
| 1326 | |
| 1327 p = DoPost(_REMOTE, '/modalities/orthanctest/find-patient', { 'PatientID' : 'ozp*' }) | |
| 1328 self.assertEqual(1, len(p)) | |
| 1329 | |
| 1330 p = DoPost(_REMOTE, '/modalities/orthanctest/find-patient', { 'PatientID' : 'o?p*' }) | |
| 1331 self.assertEqual(1, len(p)) | |
| 1332 | |
| 1333 p = DoPost(_REMOTE, '/modalities/orthanctest/find-patient', { 'PatientID' : '0?q*' }) | |
| 1334 self.assertEqual(0, len(p)) | |
| 1335 | |
| 1336 p = DoPost(_REMOTE, '/modalities/orthanctest/find-patient', { 'PatientName' : 'B*' }) | |
| 1337 self.assertEqual(0, len(p)) | |
| 1338 | |
| 1339 p = DoPost(_REMOTE, '/modalities/orthanctest/find-patient', { 'PatientName' : 'b*' }) | |
| 1340 self.assertEqual(0, len(p)) | |
| 1341 | |
| 1342 DoPost(_REMOTE, '/modalities/orthanctest/store', str(j), 'text/plain') | |
| 1343 DoPost(_REMOTE, '/modalities/orthanctest/store', str(k), 'text/plain') | |
| 1344 DoPost(_REMOTE, '/modalities/orthanctest/find-patient', { }) | |
| 1345 self.assertEqual(3, len(DoPost(_REMOTE, '/modalities/orthanctest/find-patient', { }))) | |
| 1346 | |
| 1347 p = DoPost(_REMOTE, '/modalities/orthanctest/find-patient', { 'PatientName' : 'A*' }) | |
| 1348 self.assertEqual(2, len(p)) | |
| 1349 | |
| 1350 # Test the "find-study" level. This is the instance "ColorTestImageJ.dcm" | |
| 1351 s = DoPost(_REMOTE, '/modalities/orthanctest/find-study', { 'PatientID' : 'B9uTHKOZ' }) | |
| 1352 self.assertEqual(1, len(s)) | |
| 1353 self.assertEqual('20070208', s[0]['StudyDate']) | |
| 1354 | |
| 1355 # Test range searches | |
| 1356 t = DoPost(_REMOTE, '/modalities/orthanctest/find-study', { 'PatientID' : 'B9uTHKOZ', | |
| 1357 'StudyDate' : '-20070101' }) | |
| 1358 self.assertEqual(0, len(t)) | |
| 1359 | |
| 1360 t = DoPost(_REMOTE, '/modalities/orthanctest/find-study', { 'PatientID' : 'B9uTHKOZ', | |
| 1361 'StudyDate' : '20090101-' }) | |
| 1362 self.assertEqual(0, len(t)) | |
| 1363 | |
| 1364 t = DoPost(_REMOTE, '/modalities/orthanctest/find-study', { 'PatientID' : 'B9uTHKOZ', | |
| 1365 'StudyDate' : '20070101-' }) | |
| 1366 self.assertEqual(1, len(t)) | |
| 1367 | |
| 1368 t = DoPost(_REMOTE, '/modalities/orthanctest/find-study', { 'PatientID' : 'B9uTHKOZ', | |
| 1369 'StudyDate' : '-20090101' }) | |
| 1370 self.assertEqual(1, len(t)) | |
| 1371 | |
| 1372 t = DoPost(_REMOTE, '/modalities/orthanctest/find-study', { 'PatientID' : 'B9uTHKOZ', | |
| 1373 'StudyDate' : '20070207-20070207' }) | |
| 1374 self.assertEqual(0, len(t)) | |
| 1375 | |
| 1376 t = DoPost(_REMOTE, '/modalities/orthanctest/find-study', { 'PatientID' : 'B9uTHKOZ', | |
| 1377 'StudyDate' : '20070208-20070208' }) | |
| 1378 self.assertEqual(1, len(t)) | |
| 1379 | |
| 1380 t = DoPost(_REMOTE, '/modalities/orthanctest/find-study', { 'PatientID' : 'B9uTHKOZ', | |
| 1381 'StudyDate' : '20070209-20070209' }) | |
| 1382 self.assertEqual(0, len(t)) | |
| 1383 | |
| 1384 # Test the ModalitiesInStudy tag | |
| 1385 t = DoPost(_REMOTE, '/modalities/orthanctest/find-study', { | |
| 1386 'PatientID' : 'B9uTHKOZ', | |
| 1387 'ModalitiesInStudy' : 'US' }) | |
| 1388 self.assertEqual(0, len(t)) | |
| 1389 | |
| 1390 t = DoPost(_REMOTE, '/modalities/orthanctest/find-study', { | |
| 1391 'PatientID' : 'B9uTHKOZ', | |
| 1392 'ModalitiesInStudy' : 'CT' }) | |
| 1393 self.assertEqual(1, len(t)) | |
| 1394 | |
| 1395 t = DoPost(_REMOTE, '/modalities/orthanctest/find-study', { | |
| 1396 'PatientID' : 'B9uTHKOZ', | |
| 1397 'ModalitiesInStudy' : 'US\\CT' }) | |
| 1398 self.assertEqual(1, len(t)) | |
| 1399 | |
| 1400 # Test the "find-series" level | |
| 1401 t = DoPost(_REMOTE, '/modalities/orthanctest/find-series', { | |
| 1402 'PatientID' : 'B9uTHKOZ', | |
| 1403 'StudyInstanceUID' : s[0]['StudyInstanceUID'] }) | |
| 1404 self.assertEqual(1, len(t)) | |
| 1405 | |
| 1406 # Test "\" separator | |
| 1407 t = DoPost(_REMOTE, '/modalities/orthanctest/find-series', { | |
| 1408 'PatientID' : 'B9uTHKOZ', | |
| 1409 'StudyInstanceUID' : s[0]['StudyInstanceUID'], | |
| 1410 'Modality' : 'MR\\CT\\US' }) | |
| 1411 self.assertEqual(1, len(t)) | |
| 1412 | |
| 1413 t = DoPost(_REMOTE, '/modalities/orthanctest/find-series', { | |
| 1414 'PatientID' : 'B9uTHKOZ', | |
| 1415 'StudyInstanceUID' : s[0]['StudyInstanceUID'], | |
| 1416 'Modality' : 'MR\\US' }) | |
| 1417 self.assertEqual(0, len(t)) | |
| 1418 | |
| 1419 | |
| 1420 def test_update_modalities(self): | |
| 1421 try: | |
| 1422 DoDelete(_REMOTE, '/modalities/toto') | |
| 1423 except: | |
| 1424 pass | |
| 1425 try: | |
| 1426 DoDelete(_REMOTE, '/modalities/tata') | |
| 1427 except: | |
| 1428 pass | |
| 1429 self.assertRaises(Exception, lambda: DoGet(_REMOTE, '/modalities/toto')) | |
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1430 self.assertRaises(Exception, lambda: DoDelete(_REMOTE, '/modalities/toto')) |
| 13 | 1431 DoPut(_REMOTE, '/modalities/toto', [ "STORESCP", "localhost", 2000 ]) |
| 116 | 1432 DoPut(_REMOTE, '/modalities/tata', [ "STORESCP", "localhost", 2000, 'MedInria' ]) # check backward compatiblity with obsolete manufacturer |
| 1433 DoDelete(_REMOTE, '/modalities/tata') | |
| 124 | 1434 DoPut(_REMOTE, '/modalities/tata', [ "STORESCP", "localhost", 2000, 'GenericNoUniversalWildcard' ]) |
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1435 DoDelete(_REMOTE, '/modalities/tata') |
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1436 DoPut(_REMOTE, '/modalities/tata', [ "STORESCP", "localhost", 2000, 'GenericNoWildcardInDates' ]) |
| 128 | 1437 modalitiesReadback = DoGet(_REMOTE, '/modalities?expand') |
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1438 self.assertEqual('STORESCP', modalitiesReadback['tata']['AET']) |
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1439 self.assertEqual('localhost', modalitiesReadback['tata']['Host']) |
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1440 self.assertEqual(2000, modalitiesReadback['tata']['Port']) |
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1441 self.assertEqual('GenericNoWildcardInDates', modalitiesReadback['tata']['Manufacturer']) |
| 116 | 1442 self.assertRaises(Exception, lambda: DoPut(_REMOTE, '/modalities/toto', [ "STORESCP", "localhost", 2000, 'InvalidManufacturerName' ])) |
| 13 | 1443 self.assertTrue('store' in DoGet(_REMOTE, '/modalities/toto')) |
| 1444 self.assertTrue('store' in DoGet(_REMOTE, '/modalities/tata')) | |
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1445 |
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1446 # New in Orthanc 1.8.1 |
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1447 self.assertTrue('configuration' in DoGet(_REMOTE, '/modalities/tata')) |
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1448 self.assertEqual(modalitiesReadback['tata'], DoGet(_REMOTE, '/modalities/tata/configuration')) |
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1449 |
| 13 | 1450 DoDelete(_REMOTE, '/modalities/toto') |
| 1451 DoDelete(_REMOTE, '/modalities/tata') | |
| 1452 self.assertRaises(Exception, lambda: DoGet(_REMOTE, '/modalities/toto')) | |
| 1453 self.assertRaises(Exception, lambda: DoGet(_REMOTE, '/modalities/tata')) | |
| 1454 | |
| 1455 | |
| 1456 def test_update_peers(self): | |
| 1457 # curl -X PUT http://localhost:8042/peers/toto -d '["http://localhost:8042/"]' -v | |
| 1458 try: | |
| 1459 DoDelete(_REMOTE, '/peers/toto') | |
| 1460 except: | |
| 1461 pass | |
| 1462 try: | |
| 1463 DoDelete(_REMOTE, '/peers/tata') | |
| 1464 except: | |
| 1465 pass | |
| 1466 self.assertRaises(Exception, lambda: DoGet(_REMOTE, '/peers/toto')) | |
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1467 self.assertRaises(Exception, lambda: DoDelete(_REMOTE, '/peers/toto')) |
| 13 | 1468 DoPut(_REMOTE, '/peers/toto', [ 'http://localhost:8042/' ]) |
| 214 | 1469 DoPut(_REMOTE, '/peers/tata', { 'Url': 'http://localhost:8042/', |
| 1470 'Username': 'user', | |
| 1471 'Password' : 'pass', | |
| 1472 'RemoteSelf' : 'self' }) | |
| 128 | 1473 self.assertTrue('tata' in DoGet(_REMOTE, '/peers')) |
| 1474 peersReadback = DoGet(_REMOTE, '/peers?expand') | |
| 1475 self.assertEqual('http://localhost:8042/', peersReadback['tata']['Url']) | |
| 1476 self.assertEqual('user', peersReadback['tata']['Username']) | |
| 214 | 1477 |
| 1478 if IsOrthancVersionAbove(_REMOTE, 1, 5, 4): | |
| 1479 self.assertEqual(None, peersReadback['tata']['Password']) # make sure no sensitive data is included | |
| 1480 self.assertFalse(peersReadback['tata']['Pkcs11']) # make sure no sensitive data is included | |
| 1481 self.assertEqual('self', peersReadback['tata']['RemoteSelf']) | |
| 1482 else: | |
| 1483 self.assertFalse('Password' in peersReadback['tata']) # make sure no sensitive data is included | |
| 1484 self.assertFalse('Pkcs11' in peersReadback['tata']) # make sure no sensitive data is included | |
| 1485 self.assertFalse('RemoteSelf' in peersReadback['tata']) | |
| 1486 | |
| 128 | 1487 self.assertFalse('CertificateFile' in peersReadback['tata']) # make sure no sensitive data is included |
| 1488 self.assertFalse('CertificateKeyFile' in peersReadback['tata']) # make sure no sensitive data is included | |
| 1489 self.assertFalse('CertificateKeyPassword' in peersReadback['tata']) # make sure no sensitive data is included | |
| 214 | 1490 |
| 13 | 1491 self.assertRaises(Exception, lambda: DoPut(_REMOTE, '/peers/toto', [ 'http://localhost:8042/', 'a' ])) |
| 1492 self.assertRaises(Exception, lambda: DoPut(_REMOTE, '/peers/toto', [ 'http://localhost:8042/', 'a', 'b', 'c' ])) | |
| 1493 self.assertTrue('store' in DoGet(_REMOTE, '/peers/toto')) | |
| 1494 self.assertTrue('store' in DoGet(_REMOTE, '/peers/tata')) | |
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1495 |
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1496 # New in Orthanc 1.8.1 |
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1497 self.assertTrue('configuration' in DoGet(_REMOTE, '/peers/tata')) |
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1498 self.assertEqual(peersReadback['tata'], DoGet(_REMOTE, '/peers/tata/configuration')) |
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1499 |
| 13 | 1500 DoDelete(_REMOTE, '/peers/toto') |
| 1501 DoDelete(_REMOTE, '/peers/tata') | |
| 1502 self.assertRaises(Exception, lambda: DoGet(_REMOTE, '/peers/toto')) | |
| 1503 self.assertRaises(Exception, lambda: DoGet(_REMOTE, '/peers/tata')) | |
| 1504 | |
| 1505 | |
| 1506 def test_mesterhazy_modification(self): | |
| 1507 # When I modify a series ( eg. curl | |
| 1508 # http://localhost:8042/series/uidhere/modify -X POST -d | |
| 1509 # '{"Replace":{"SeriesDate":"19990101"}}' ) the modified | |
| 1510 # series is added to a new Study, instead of the existing | |
| 1511 # Study. Fixed in Orthanc 0.7.5 | |
| 1512 | |
| 1513 u = UploadInstance(_REMOTE, 'DummyCT.dcm') | |
| 1514 study = 'b9c08539-26f93bde-c81ab0d7-bffaf2cb-a4d0bdd0' | |
| 1515 series = 'f2635388-f01d497a-15f7c06b-ad7dba06-c4c599fe' | |
| 1516 | |
| 1517 modified = DoPost(_REMOTE, '/series/%s/modify' % series, | |
| 1518 json.dumps({ "Replace" : { "SeriesDate" : "19990101" }})) | |
| 1519 | |
| 1520 self.assertEqual(study, DoGet(_REMOTE, '/series/%s' % modified['ID']) ['ParentStudy']) | |
| 1521 | |
| 1522 | |
| 1523 def test_create(self): | |
| 1524 i = DoPost(_REMOTE, '/tools/create-dicom', | |
| 1525 json.dumps({ | |
| 1526 'PatientName' : 'Jodogne', | |
| 1527 'Modality' : 'CT', | |
| 58 | 1528 'SOPClassUID' : '1.2.840.10008.5.1.4.1.1.1', |
| 13 | 1529 'PixelData' : 'data:image/png;base64,iVBORw0KGgoAAAANSUhEUgAAAAUAAAAFCAYAAACNbyblAAAAHElEQVQI12P4//8/w38GIAXDIBKE0DHxgljNBAAO9TXL0Y4OHwAAAABJRU5ErkJggg==' # red dot in RGBA |
| 1530 })) | |
| 1531 | |
| 1532 self.assertEqual('Jodogne', DoGet(_REMOTE, '/instances/%s/content/PatientName' % i['ID']).strip()) | |
| 1533 self.assertEqual('CT', DoGet(_REMOTE, '/instances/%s/content/Modality' % i['ID']).strip()) | |
| 1534 | |
| 1535 png = GetImage(_REMOTE, '/instances/%s/preview' % i['ID']) | |
| 1536 self.assertEqual((5, 5), png.size) | |
| 1537 | |
| 38 | 1538 j = DoGet(_REMOTE, i['Path']) |
| 1539 self.assertEqual('Instance', j['Type']) | |
| 1540 self.assertEqual(j['ID'], i['ID']) | |
| 1541 | |
| 13 | 1542 |
| 1543 def test_pilates(self): | |
| 1544 # "SCU failed error when accessing orthanc with osirix" by | |
| 1545 # Pilates Agentur (Mar 10, 2014 at 9:33 PM) | |
| 1546 i = UploadInstance(_REMOTE, 'PilatesArgenturGEUltrasoundOsiriX.dcm')['ID'] | |
| 1547 self.assertEqual(0, len(DoGet(_LOCAL, '/patients'))) | |
| 1548 j = DoPost(_REMOTE, '/modalities/orthanctest/store', str(i), 'text/plain') | |
| 1549 self.assertEqual(1, len(DoGet(_LOCAL, '/patients'))) | |
| 1550 | |
| 1551 | |
| 1552 def test_shared_tags(self): | |
| 1553 a = UploadInstance(_REMOTE, 'Knee/T1/IM-0001-0001.dcm')['ID'] | |
| 1554 b = UploadInstance(_REMOTE, 'Knee/T1/IM-0001-0002.dcm')['ID'] | |
| 1555 p = DoGet(_REMOTE, '/patients')[0] | |
| 1556 | |
| 1557 self.assertTrue('0010,0010' in DoGet(_REMOTE, '/patients/%s/shared-tags' % p)) | |
| 1558 self.assertTrue('PatientName' in DoGet(_REMOTE, '/patients/%s/shared-tags?simplify' % p)) | |
|
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1559 self.assertTrue('0010,0010' in DoGet(_REMOTE, '/patients/%s/shared-tags?short' % p)) |
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1560 |
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1561 self.assertEqual('KNEE', DoGet(_REMOTE, '/patients/%s/shared-tags' % p)['0010,0010']['Value']) |
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1562 self.assertEqual('KNEE', DoGet(_REMOTE, '/patients/%s/shared-tags?simplify' % p)['PatientName']) |
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1563 self.assertEqual('KNEE', DoGet(_REMOTE, '/patients/%s/shared-tags?short' % p)['0010,0010']) |
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1564 |
| 13 | 1565 self.assertTrue('0008,1030' in DoGet(_REMOTE, '/patients/%s/shared-tags' % p)) |
| 1566 self.assertTrue('StudyDescription' in DoGet(_REMOTE, '/patients/%s/shared-tags?simplify' % p)) | |
| 1567 self.assertTrue('0008,103e' in DoGet(_REMOTE, '/patients/%s/shared-tags' % p)) | |
| 1568 self.assertTrue('SeriesDescription' in DoGet(_REMOTE, '/patients/%s/shared-tags?simplify' % p)) | |
| 1569 self.assertFalse('0008,0018' in DoGet(_REMOTE, '/patients/%s/shared-tags' % p)) | |
| 1570 self.assertFalse('SOPInstanceUID' in DoGet(_REMOTE, '/patients/%s/shared-tags?simplify' % p)) | |
| 1571 | |
| 1572 self.assertTrue('0008,0018' in DoGet(_REMOTE, '/instances/%s/tags' % a)) | |
| 1573 self.assertTrue('SOPInstanceUID' in DoGet(_REMOTE, '/instances/%s/tags?simplify' % a)) | |
| 1574 | |
| 1575 | |
| 1576 def test_modules(self): | |
| 1577 a = UploadInstance(_REMOTE, 'Knee/T1/IM-0001-0001.dcm')['ID'] | |
| 1578 p = DoGet(_REMOTE, '/patients')[0] | |
| 1579 s = DoGet(_REMOTE, '/studies')[0] | |
| 1580 t = DoGet(_REMOTE, '/series')[0] | |
| 1581 | |
| 1582 self.assertTrue('0010,0010' in DoGet(_REMOTE, '/patients/%s/module' % p)) | |
| 1583 self.assertTrue('PatientName' in DoGet(_REMOTE, '/patients/%s/module?simplify' % p)) | |
| 1584 self.assertTrue('0010,0010' in DoGet(_REMOTE, '/studies/%s/module-patient' % p)) | |
| 1585 self.assertTrue('PatientName' in DoGet(_REMOTE, '/studies/%s/module-patient?simplify' % p)) | |
| 1586 self.assertTrue('0008,1030' in DoGet(_REMOTE, '/studies/%s/module' % s)) | |
| 1587 self.assertTrue('StudyDescription' in DoGet(_REMOTE, '/studies/%s/module?simplify' % s)) | |
| 1588 self.assertTrue('0008,103e' in DoGet(_REMOTE, '/series/%s/module' % p)) | |
| 1589 self.assertTrue('SeriesDescription' in DoGet(_REMOTE, '/series/%s/module?simplify' % p)) | |
| 1590 self.assertTrue('0008,0018' in DoGet(_REMOTE, '/instances/%s/module' % a)) | |
| 1591 self.assertTrue('SOPInstanceUID' in DoGet(_REMOTE, '/instances/%s/module?simplify' % a)) | |
| 1592 | |
| 1593 | |
| 1594 def test_auto_directory(self): | |
| 1595 a = UploadInstance(_REMOTE, 'Knee/T1/IM-0001-0001.dcm')['ID'] | |
| 1596 self.assertTrue('now' in DoGet(_REMOTE, '/tools')) | |
| 1597 self.assertTrue('dicom-conformance' in DoGet(_REMOTE, '/tools')) | |
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1598 self.assertTrue('invalidate-tags' in DoGet(_REMOTE, '/tools')) |
| 13 | 1599 self.assertTrue(len(DoGet(_REMOTE, '/tools/dicom-conformance')) > 1000) |
| 1600 self.assertTrue('orthanctest' in DoGet(_REMOTE, '/modalities')) | |
| 1601 self.assertTrue('echo' in DoGet(_REMOTE, '/modalities/orthanctest')) | |
| 1602 self.assertTrue('find' in DoGet(_REMOTE, '/modalities/orthanctest')) | |
| 1603 self.assertTrue('find-instance' in DoGet(_REMOTE, '/modalities/orthanctest')) | |
| 1604 self.assertTrue('find-patient' in DoGet(_REMOTE, '/modalities/orthanctest')) | |
| 1605 self.assertTrue('find-series' in DoGet(_REMOTE, '/modalities/orthanctest')) | |
| 1606 self.assertTrue('find-study' in DoGet(_REMOTE, '/modalities/orthanctest')) | |
| 1607 self.assertTrue('store' in DoGet(_REMOTE, '/modalities/orthanctest')) | |
| 1608 self.assertTrue('store' in DoGet(_REMOTE, '/peers/peer')) | |
| 1609 self.assertTrue('matlab' in DoGet(_REMOTE, '/instances/%s/frames/0' % a)) | |
| 79 | 1610 self.assertTrue('raw' in DoGet(_REMOTE, '/instances/%s/frames/0' % a)) |
| 13 | 1611 self.assertRaises(Exception, lambda: DoGet(_REMOTE, '/tools/nope')) |
| 28 | 1612 self.assertRaises(Exception, lambda: DoGet(_REMOTE, '/nope')) |
| 1613 self.assertRaises(Exception, lambda: DoGet(_REMOTE, '/nope/nope.html')) | |
| 1614 self.assertEqual(404, DoGetRaw(_REMOTE, '/nope')[0].status) | |
| 1615 self.assertEqual(404, DoGetRaw(_REMOTE, '/nope/nope.html')[0].status) | |
| 13 | 1616 |
| 1617 | |
| 1618 def test_echo(self): | |
| 1619 DoPost(_REMOTE, '/modalities/orthanctest/echo') | |
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1620 DoPost(_REMOTE, '/modalities/orthanctest/echo', '{}') |
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1621 |
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1622 # The following was not working in Orthanc 1.7.0 -> 1.8.1 |
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1623 DoPost(_REMOTE, '/modalities/orthanctest/echo', '') |
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1624 self.assertRaises(Exception, lambda: DoGet(_REMOTE, '/modalities/nope/echo')) |
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1625 |
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1626 # New in Orthanc 1.8.1 |
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1627 DoPost(_REMOTE, '/tools/dicom-echo', [ |
| 355 | 1628 _REMOTE['DicomAet'], _REMOTE['Server'], _REMOTE['DicomPort'] ]) |
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1629 DoPost(_REMOTE, '/tools/dicom-echo', DoGet(_REMOTE, '/modalities/orthanctest/configuration')) |
| 13 | 1630 |
| 353 | 1631 # Use the 'CheckFind' new option in Orthanc 1.8.1 |
| 1632 DoPost(_REMOTE, '/modalities/self/echo', { 'CheckFind' : True }) | |
| 1633 DoPost(_REMOTE, '/tools/dicom-echo', { | |
| 1634 'AET' : _REMOTE['DicomAet'], | |
| 1635 'Host' : _REMOTE['Server'], | |
| 1636 'Port' : _REMOTE['DicomPort'], | |
| 1637 'CheckFind' : True | |
| 1638 }) | |
| 1639 | |
| 13 | 1640 |
| 1641 def test_xml(self): | |
| 1642 json = DoGet(_REMOTE, '/tools', headers = { 'accept' : 'application/json' }) | |
| 1643 xml = minidom.parseString(DoGet(_REMOTE, '/tools', headers = { 'accept' : 'application/xml' })) | |
| 1644 items = xml.getElementsByTagName('root')[0].getElementsByTagName('item') | |
| 1645 self.assertEqual(len(items), len(json)) | |
| 1646 | |
| 1647 self.assertTrue('dicom-conformance' in json) | |
| 1648 | |
| 1649 ok = False | |
| 1650 for i in items: | |
| 1651 if i.childNodes[0].data == 'dicom-conformance': | |
| 1652 ok = True | |
| 1653 self.assertTrue(ok) | |
| 1654 | |
| 1655 | |
|
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1656 def test_googlecode_issue_16(self): |
| 13 | 1657 i = UploadInstance(_REMOTE, 'Issue16.dcm')['ID'] |
| 1658 t = DoGet(_REMOTE, '/instances/%s/tags?simplify' % i)['FrameIncrementPointer'] | |
| 1659 self.assertEqual('0018,1063', t) | |
| 1660 | |
| 1661 | |
|
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1662 def test_googlecode_issue_22(self): |
| 13 | 1663 s = UploadInstance(_REMOTE, 'Issue22.dcm')['ID'] |
| 1664 a = [ | |
| 1665 "f804691f62197040438f4627c6b994f1", # Frame 0 | |
| 1666 "c69eee9a51eea3e8611e82e578897254", | |
| 1667 "315666be83e2d0111c77bc0996d84901", | |
| 1668 "3e27aa959d911172c48a1436443c72b1", | |
| 1669 "958642c9e7e9d232d3869faff546058c", | |
| 1670 "5e7ea8e3e4230cae707d143481355c59", | |
| 1671 "eda37f83558d858a596175aed8b2ad47", | |
| 1672 "486713bd2895c4ecbe0e97715ac7f80a", | |
| 1673 "091ef729eb169e67da8a0faa9631f9a8", | |
| 1674 "5aa2b8c7ffe0a483efaa8e12417686ca", | |
| 1675 "e2f39e85896fe58876654b94cd0b5013", | |
| 1676 "6fd2129e4950abbe1be053bc814d5da8", | |
| 1677 "c3331a8ba7a757f3d423735ab7fa81f9", | |
| 1678 "746f808582156734dd6b6fdfd3a0b72c", | |
| 1679 "8075ea2b227a70c60ea6b7b75a6bb190", | |
| 1680 "806b8b3e300c615099c11a5ec23465aa", | |
| 1681 "7c836aa298ba6eef96434579af631a11", | |
| 1682 "a0357dc9f4f72d73a885c33d7c287446", | |
| 1683 "f25ba3be1cc7d7fad95706adc199ea7d", | |
| 1684 "8b114c526b8cbed6cad8a3248b7b480c", | |
| 1685 "44e6670f127e612a2b4aa60a0d207698", | |
| 1686 "b8945f90fe02facf2ace24ca1ecbe0a5", | |
| 1687 "95c796c2fa8f59018b15cf2987b1f79b", | |
| 1688 "ce0a51ab30224205b44920221dc27351", # Frame 23 | |
| 1689 ] | |
| 1690 | |
| 1691 self.assertEqual(24, len(DoGet(_REMOTE, '/instances/%s/frames' % s))) | |
| 1692 self.assertRaises(Exception, lambda: DoGet(_REMOTE, '/instances/%s/frames/24/preview' % s)) | |
| 1693 | |
| 1694 for i in range(len(a)): | |
| 1695 self.assertEqual(a[i], ComputeMD5(DoGet(_REMOTE, '/instances/%s/frames/%d/preview' % (s, i)))) | |
| 1696 | |
| 1697 | |
|
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1698 def test_googlecode_issue_19(self): |
|
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1699 # This is an image with "YBR_FULL" photometric interpretation, it is not supported by Orthanc |
| 13 | 1700 # gdcmconv -i /home/jodogne/DICOM/GdcmDatabase/US_DataSet/HDI5000_US/3EAF5E01 -w -o Issue19.dcm |
| 1701 | |
| 1702 a = UploadInstance(_REMOTE, 'Issue19.dcm')['ID'] | |
| 304 | 1703 if not HasGdcmPlugin(_REMOTE): |
|
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1704 self.assertRaises(Exception, lambda: DoGet(_REMOTE, '/instances/941ad3c8-05d05b88-560459f9-0eae0e20-6cddd533/preview')) |
| 13 | 1705 |
| 1706 | |
|
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1707 def test_googlecode_issue_37(self): |
| 13 | 1708 # Same test for issues 35 and 37. Fixed in Orthanc 0.9.1 |
| 1709 u = UploadInstance(_REMOTE, 'Beaufix/IM-0001-0001.dcm')['ID'] | |
| 1710 | |
| 1711 a = DoPost(_REMOTE, '/tools/find', { 'Level' : 'Series', | |
| 1712 'CaseSensitive' : True, | |
| 1713 'Query' : { 'StationName' : 'SMR4-MP3' }}) | |
| 1714 self.assertEqual(1, len(a)) | |
| 14 | 1715 |
| 1716 | |
| 1717 def test_rest_find(self): | |
| 1718 # Upload 8 instances | |
| 1719 for i in range(2): | |
| 1720 UploadInstance(_REMOTE, 'Brainix/Flair/IM-0001-000%d.dcm' % (i + 1)) | |
| 1721 UploadInstance(_REMOTE, 'Brainix/Epi/IM-0001-000%d.dcm' % (i + 1)) | |
| 1722 UploadInstance(_REMOTE, 'Knee/T1/IM-0001-000%d.dcm' % (i + 1)) | |
| 1723 UploadInstance(_REMOTE, 'Knee/T2/IM-0001-000%d.dcm' % (i + 1)) | |
| 1724 | |
| 1725 a = DoPost(_REMOTE, '/tools/find', { 'Level' : 'Patient', | |
| 1726 'CaseSensitive' : False, | |
|
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1727 'Query' : { 'PatientName' : 'BRAINIX' }}) |
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1728 self.assertEqual(1, len(a)) |
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1729 |
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1730 a = DoPost(_REMOTE, '/tools/find', { 'Level' : 'Patient', |
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1731 'CaseSensitive' : False, |
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1732 'Query' : { 'PatientName' : 'BRAINIX\\KNEE\\NOPE' }}) |
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1733 self.assertEqual(2, len(a)) |
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1734 |
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1735 a = DoPost(_REMOTE, '/tools/find', { 'Level' : 'Patient', |
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1736 'CaseSensitive' : False, |
| 14 | 1737 'Query' : { 'PatientName' : '*n*' }}) |
| 1738 self.assertEqual(2, len(a)) | |
| 1739 | |
| 1740 a = DoPost(_REMOTE, '/tools/find', { 'Level' : 'Patient', | |
| 1741 'CaseSensitive' : True, | |
| 1742 'Query' : { 'PatientName' : '*n*' }}) | |
| 1743 self.assertEqual(0, len(a)) | |
| 1744 | |
| 1745 a = DoPost(_REMOTE, '/tools/find', { 'Expand' : True, | |
| 1746 'Level' : 'Patient', | |
| 1747 'CaseSensitive' : False, | |
| 1748 'Query' : { 'PatientName' : '*ne*' }}) | |
| 1749 self.assertEqual(1, len(a)) | |
| 1750 self.assertEqual('20080822', a[0]['MainDicomTags']['PatientBirthDate']) | |
| 1751 | |
| 1752 a = DoPost(_REMOTE, '/tools/find', { 'Level' : 'Patient', | |
| 1753 'CaseSensitive' : True, | |
| 1754 'Query' : { 'PatientName' : '*ne*' }}) | |
| 1755 self.assertEqual(0, len(a)) | |
| 1756 | |
| 1757 a = DoPost(_REMOTE, '/tools/find', { 'Level' : 'Study', | |
| 1758 'CaseSensitive' : True, | |
| 1759 'Query' : { 'PatientName' : '*NE*' }}) | |
| 1760 self.assertEqual(1, len(a)) | |
| 1761 | |
| 1762 a = DoPost(_REMOTE, '/tools/find', { 'Level' : 'Series', | |
| 1763 'CaseSensitive' : True, | |
| 1764 'Query' : { 'PatientName' : '*NE*' }}) | |
| 1765 self.assertEqual(2, len(a)) | |
| 1766 | |
| 1767 a = DoPost(_REMOTE, '/tools/find', { 'Level' : 'Instance', | |
| 1768 'CaseSensitive' : True, | |
| 1769 'Query' : { 'PatientName' : '*NE*' }}) | |
| 1770 self.assertEqual(4, len(a)) | |
| 1771 | |
| 1772 a = DoPost(_REMOTE, '/tools/find', { 'Level' : 'Patient', 'Query' : { }}) | |
| 1773 self.assertEqual(2, len(a)) | |
| 1774 | |
| 1775 a = DoPost(_REMOTE, '/tools/find', { 'Level' : 'Study', 'Query' : { }}) | |
| 1776 self.assertEqual(2, len(a)) | |
| 1777 | |
| 1778 a = DoPost(_REMOTE, '/tools/find', { 'Level' : 'Series', 'Query' : { }}) | |
| 1779 self.assertEqual(4, len(a)) | |
| 1780 | |
| 1781 a = DoPost(_REMOTE, '/tools/find', { 'Level' : 'Instance', 'Query' : { }}) | |
| 1782 self.assertEqual(8, len(a)) | |
| 1783 | |
|
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1784 a = DoPost(_REMOTE, '/tools/find', { 'Level' : 'Study', |
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1785 'Expand' : True, |
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1786 'Query' : { 'StudyDate' : '20061201-20061201' }}) |
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1787 self.assertEqual(1, len(a)) |
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1788 self.assertEqual('BRAINIX', a[0]['PatientMainDicomTags']['PatientName']) |
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1789 |
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1790 a = DoPost(_REMOTE, '/tools/find', { 'Level' : 'Study', |
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1791 'Expand' : True, |
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1792 'Query' : { 'StudyDate' : '20061201-20091201' }}) |
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1793 self.assertEqual(2, len(a)) |
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1794 for i in range(2): |
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1795 self.assertTrue(a[i]['PatientMainDicomTags']['PatientName'] in ['BRAINIX', 'KNEE']) |
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1796 |
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1797 a = DoPost(_REMOTE, '/tools/find', { 'Level' : 'Study', |
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1798 'Query' : { 'StudyDate' : '20061202-20061202' }}) |
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1799 self.assertEqual(0, len(a)) |
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1800 |
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1801 a = DoPost(_REMOTE, '/tools/find', { 'Level' : 'Study', |
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1802 'Expand' : True, |
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1803 'Query' : { 'StudyDate' : '-20061201' }}) |
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1804 self.assertEqual(1, len(a)) |
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1805 self.assertEqual('BRAINIX', a[0]['PatientMainDicomTags']['PatientName']) |
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1806 |
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1807 a = DoPost(_REMOTE, '/tools/find', { 'Level' : 'Study', |
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1808 'Expand' : True, |
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1809 'Query' : { 'StudyDate' : '-20051201' }}) |
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1810 self.assertEqual(0, len(a)) |
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1811 |
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1812 a = DoPost(_REMOTE, '/tools/find', { 'Level' : 'Study', |
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1813 'Expand' : True, |
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1814 'Query' : { 'StudyDate' : '20061201-' }}) |
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1815 self.assertEqual(2, len(a)) |
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1816 for i in range(2): |
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1817 self.assertTrue(a[i]['PatientMainDicomTags']['PatientName'] in ['BRAINIX', 'KNEE']) |
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1818 |
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1819 a = DoPost(_REMOTE, '/tools/find', { 'Level' : 'Study', |
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1820 'Expand' : True, |
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1821 'Query' : { 'StudyDate' : '20061202-' }}) |
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1822 self.assertEqual(1, len(a)) |
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1823 self.assertEqual('KNEE', a[0]['PatientMainDicomTags']['PatientName']) |
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1824 |
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1825 a = DoPost(_REMOTE, '/tools/find', { 'Level' : 'Study', |
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1826 'Expand' : True, |
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1827 'Query' : { 'StudyDate' : '20080819-' }}) |
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1828 self.assertEqual(1, len(a)) |
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1829 self.assertEqual('KNEE', a[0]['PatientMainDicomTags']['PatientName']) |
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1830 |
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1831 a = DoPost(_REMOTE, '/tools/find', { 'Level' : 'Study', |
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1832 'Expand' : True, |
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1833 'Query' : { 'StudyDate' : '20080820-' }}) |
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1834 self.assertEqual(0, len(a)) |
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1835 |
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1836 |
| 14 | 1837 |
| 1838 def test_rest_query_retrieve(self): | |
| 1839 self.assertEqual(0, len(DoGet(_REMOTE, '/patients'))) | |
| 1840 | |
| 1841 # Upload 8 instances | |
| 1842 for i in range(2): | |
| 1843 UploadInstance(_REMOTE, 'Brainix/Flair/IM-0001-000%d.dcm' % (i + 1)) | |
| 1844 UploadInstance(_REMOTE, 'Brainix/Epi/IM-0001-000%d.dcm' % (i + 1)) | |
| 1845 UploadInstance(_REMOTE, 'Knee/T1/IM-0001-000%d.dcm' % (i + 1)) | |
| 1846 UploadInstance(_REMOTE, 'Knee/T2/IM-0001-000%d.dcm' % (i + 1)) | |
| 1847 | |
| 1848 self.assertEqual(2, len(DoGet(_REMOTE, '/patients'))) | |
| 1849 for p in DoGet(_REMOTE, '/patients'): | |
| 1850 DoPost(_REMOTE, '/modalities/orthanctest/store', p) | |
| 1851 DoDelete(_REMOTE, '/patients/%s' % p) | |
| 1852 | |
| 1853 for q in DoGet(_REMOTE, '/queries'): | |
| 1854 DoDelete(_REMOTE, '/queries/%s' % q) | |
| 1855 | |
| 1856 self.assertEqual(0, len(DoGet(_REMOTE, '/patients'))) | |
| 1857 self.assertEqual(0, len(DoGet(_REMOTE, '/queries'))) | |
| 1858 a = DoPost(_REMOTE, '/modalities/orthanctest/query', { 'Level' : 'Series', | |
| 27 | 1859 'Query' : { |
| 1860 'PatientName' : '*NE*', | |
| 1861 'StudyDate' : '*', | |
| 1862 }})['ID'] | |
| 14 | 1863 self.assertEqual(1, len(DoGet(_REMOTE, '/queries'))) |
| 1864 | |
| 1865 b = DoGet(_REMOTE, '/queries/%s' % a) | |
| 1866 self.assertTrue('answers' in b) | |
| 1867 self.assertTrue('level' in b) | |
| 1868 self.assertTrue('modality' in b) | |
| 1869 self.assertTrue('query' in b) | |
| 1870 self.assertTrue('retrieve' in b) | |
| 1871 self.assertEqual('Series', DoGet(_REMOTE, '/queries/%s/level' % a)) | |
| 1872 self.assertEqual('orthanctest', DoGet(_REMOTE, '/queries/%s/modality' % a)) | |
| 1873 | |
| 1874 q = DoGet(_REMOTE, '/queries/%s/query?simplify' % a) | |
| 27 | 1875 self.assertEqual(2, len(q)) |
| 14 | 1876 self.assertTrue('PatientName' in q) |
| 27 | 1877 self.assertTrue('StudyDate' in q) |
| 14 | 1878 self.assertEqual('*NE*', q['PatientName']) |
| 27 | 1879 self.assertEqual('*', q['StudyDate']) |
| 14 | 1880 |
| 1881 self.assertEqual(2, len(DoGet(_REMOTE, '/queries/%s/answers' % a))) | |
| 1882 | |
| 1883 s = DoGet(_REMOTE, '/queries/%s/answers/0' % a) | |
| 1884 self.assertTrue('content' in s) | |
| 1885 self.assertTrue('retrieve' in s) | |
| 1886 | |
| 1887 s = DoGet(_REMOTE, '/queries/%s/answers/0/content?simplify' % a) | |
| 1888 self.assertEqual('887', s['PatientID']) | |
| 1889 self.assertEqual('2.16.840.1.113669.632.20.121711.10000160881', s['StudyInstanceUID']) | |
| 1890 | |
| 1891 self.assertEqual(0, len(DoGet(_REMOTE, '/patients'))) | |
| 1892 DoPost(_REMOTE, '/queries/%s/answers/0/retrieve' % a, 'ORTHANC') | |
| 1893 self.assertEqual(1, len(DoGet(_REMOTE, '/patients'))) | |
| 1894 self.assertEqual(1, len(DoGet(_REMOTE, '/studies'))) | |
| 1895 self.assertEqual(1, len(DoGet(_REMOTE, '/series'))) | |
| 1896 self.assertEqual(2, len(DoGet(_REMOTE, '/instances'))) | |
| 1897 | |
| 112 | 1898 DoPost(_REMOTE, '/queries/%s/answers/1/retrieve' % a, 'ORTHANC', 'application/json') # make sure the issue #36 is fixed (query/retrieve Rest API: /retrieve route shall accept application/json content type) |
| 14 | 1899 self.assertEqual(1, len(DoGet(_REMOTE, '/patients'))) |
| 1900 self.assertEqual(1, len(DoGet(_REMOTE, '/studies'))) | |
| 1901 self.assertEqual(2, len(DoGet(_REMOTE, '/series'))) | |
| 1902 self.assertEqual(4, len(DoGet(_REMOTE, '/instances'))) | |
| 1903 | |
|
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1904 # New in Orthanc 1.4.3 |
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1905 s = DoGet(_REMOTE, '/queries/%s/answers?expand&simplify' % a) |
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1906 self.assertEqual(2, len(s)) |
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1907 for i in range(2): |
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1908 self.assertEqual('SERIES', s[i]['QueryRetrieveLevel']) |
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1909 self.assertEqual('887', s[i]['PatientID']) |
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1910 self.assertEqual('2.16.840.1.113669.632.20.121711.10000160881', s[i]['StudyInstanceUID']) |
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1911 |
| 14 | 1912 DoDelete(_REMOTE, '/queries/%s' % a) |
| 1913 self.assertEqual(0, len(DoGet(_REMOTE, '/queries'))) | |
| 1914 | |
| 1915 | |
| 1916 def test_parent(self): | |
| 1917 u = UploadInstance(_REMOTE, 'DummyCT.dcm')['ID'] | |
| 1918 patient = '6816cb19-844d5aee-85245eba-28e841e6-2414fae2' | |
| 1919 study = 'b9c08539-26f93bde-c81ab0d7-bffaf2cb-a4d0bdd0' | |
| 1920 series = 'f2635388-f01d497a-15f7c06b-ad7dba06-c4c599fe' | |
| 1921 instance = '66a662ce-7430e543-bad44d47-0dc5a943-ec7a538d' | |
|
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|
1922 self.assertEqual(instance, u) |
| 14 | 1923 |
| 1924 a = DoGet(_REMOTE, '/studies/%s/patient' % study) | |
| 1925 self.assertEqual('Patient', a['Type']) | |
| 1926 self.assertEqual(patient, a['ID']) | |
| 1927 | |
| 1928 a = DoGet(_REMOTE, '/series/%s/patient' % series) | |
| 1929 self.assertEqual('Patient', a['Type']) | |
| 1930 self.assertEqual(patient, a['ID']) | |
| 1931 | |
| 1932 a = DoGet(_REMOTE, '/series/%s/study' % series) | |
| 1933 self.assertEqual('Study', a['Type']) | |
| 1934 self.assertEqual(study, a['ID']) | |
| 1935 | |
| 1936 a = DoGet(_REMOTE, '/instances/%s/patient' % instance) | |
| 1937 self.assertEqual('Patient', a['Type']) | |
| 1938 self.assertEqual(patient, a['ID']) | |
| 1939 | |
| 1940 a = DoGet(_REMOTE, '/instances/%s/study' % instance) | |
| 1941 self.assertEqual('Study', a['Type']) | |
| 1942 self.assertEqual(study, a['ID']) | |
| 1943 | |
| 1944 a = DoGet(_REMOTE, '/instances/%s/series' % instance) | |
| 1945 self.assertEqual('Series', a['Type']) | |
| 1946 self.assertEqual(series, a['ID']) | |
| 1947 | |
| 1948 | |
| 1949 def test_shanon(self): | |
| 1950 def Anonymize(instance, replacements = {}): | |
| 119 | 1951 return DoPost(_REMOTE, '/instances/%s/anonymize' % instance, { |
| 1952 'Replace' : replacements, | |
| 1953 'Force' : True, | |
| 1954 }, 'application/json') | |
| 14 | 1955 |
| 1956 self.assertEqual(0, len(DoGet(_REMOTE, '/instances'))) | |
| 1957 u = UploadInstance(_REMOTE, 'DummyCT.dcm')['ID'] | |
| 1958 self.assertEqual(1, len(DoGet(_REMOTE, '/instances'))) | |
| 1959 | |
| 1960 tags = [ 'PatientID', 'StudyInstanceUID', 'SeriesInstanceUID', 'SOPInstanceUID', 'DeidentificationMethod' ] | |
| 1961 ids = [ 'ozp00SjY2xG', | |
| 1962 '1.2.840.113619.2.176.2025.1499492.7391.1171285944.390', | |
| 1963 '1.2.840.113619.2.176.2025.1499492.7391.1171285944.394', | |
| 1964 '1.2.840.113619.2.176.2025.1499492.7040.1171286242.109' ] | |
| 1965 | |
| 1966 a = ExtractDicomTags(Anonymize(u), tags) | |
| 1967 for i in range(4): | |
| 1968 self.assertNotEqual(ids[i], a[i]) | |
| 1969 self.assertTrue(a[4].startswith('Orthanc')) | |
| 1970 | |
| 1971 a = ExtractDicomTags(Anonymize(u, { 'PatientName' : 'toto' }), tags) | |
| 1972 for i in range(4): | |
| 1973 self.assertNotEqual(ids[i], a[i]) | |
| 1974 self.assertFalse(a[4].startswith('Orthanc')) | |
| 1975 | |
| 1976 a = ExtractDicomTags(Anonymize(u, { 'SOPInstanceUID' : 'instance' }), tags) | |
| 1977 self.assertEqual('instance', a[3]) | |
| 1978 self.assertFalse(a[4].startswith('Orthanc')) | |
| 1979 | |
| 1980 a = ExtractDicomTags(Anonymize(u, { 'SeriesInstanceUID' : 'series' }), tags) | |
| 1981 self.assertEqual('series', a[2]) | |
| 1982 self.assertFalse(a[4].startswith('Orthanc')) | |
| 1983 | |
| 1984 a = ExtractDicomTags(Anonymize(u, { 'StudyInstanceUID' : 'study' }), tags) | |
| 1985 self.assertEqual('study', a[1]) | |
| 1986 self.assertFalse(a[4].startswith('Orthanc')) | |
| 1987 | |
| 1988 a = ExtractDicomTags(Anonymize(u, { 'PatientID' : 'patient' }), tags) | |
| 1989 self.assertEqual('patient', a[0]) | |
| 1990 self.assertFalse(a[4].startswith('Orthanc')) | |
| 1991 | |
| 1992 a = ExtractDicomTags(Anonymize(u, { 'PatientID' : 'patient', | |
| 1993 'StudyInstanceUID' : 'study', | |
| 1994 'SeriesInstanceUID' : 'series', | |
| 1995 'SOPInstanceUID' : 'instance' }), tags) | |
| 1996 self.assertEqual('patient', a[0]) | |
| 1997 self.assertFalse(a[4].startswith('Orthanc')) | |
| 1998 | |
| 1999 self.assertEqual(1, len(DoGet(_REMOTE, '/instances'))) | |
| 2000 | |
| 2001 | |
| 2002 def test_shanon_2(self): | |
| 2003 def Modify(instance, replacements = {}): | |
| 119 | 2004 return DoPost(_REMOTE, '/instances/%s/modify' % instance, { |
| 2005 'Replace' : replacements, | |
| 2006 'Force': True, | |
| 2007 }, 'application/json') | |
| 14 | 2008 |
| 2009 self.assertEqual(0, len(DoGet(_REMOTE, '/instances'))) | |
| 2010 u = UploadInstance(_REMOTE, 'DummyCT.dcm')['ID'] | |
| 2011 self.assertEqual(1, len(DoGet(_REMOTE, '/instances'))) | |
| 2012 | |
| 2013 tags = [ 'PatientID', 'StudyInstanceUID', 'SeriesInstanceUID', 'SOPInstanceUID', 'DeidentificationMethod' ] | |
| 2014 ids = [ 'ozp00SjY2xG', | |
| 2015 '1.2.840.113619.2.176.2025.1499492.7391.1171285944.390', | |
| 2016 '1.2.840.113619.2.176.2025.1499492.7391.1171285944.394', | |
| 2017 '1.2.840.113619.2.176.2025.1499492.7040.1171286242.109' ] | |
| 2018 | |
| 2019 a = ExtractDicomTags(Modify(u), tags) | |
| 2020 self.assertEqual(ids[0], a[0]) | |
| 2021 self.assertEqual(ids[1], a[1]) | |
| 2022 self.assertEqual(ids[2], a[2]) | |
| 2023 self.assertNotEqual(ids[3], a[3]) | |
| 2024 self.assertEqual(0, len(a[4])) | |
| 2025 | |
| 2026 a = ExtractDicomTags(Modify(u, { 'SOPInstanceUID' : 'instance' }), tags) | |
| 2027 self.assertEqual(ids[0], a[0]) | |
| 2028 self.assertEqual(ids[1], a[1]) | |
| 2029 self.assertEqual(ids[2], a[2]) | |
| 2030 self.assertEqual('instance', a[3]) | |
| 2031 | |
| 2032 a = ExtractDicomTags(Modify(u, { 'SeriesInstanceUID' : 'series' }), tags) | |
| 2033 self.assertEqual(ids[0], a[0]) | |
| 2034 self.assertEqual(ids[1], a[1]) | |
| 2035 self.assertEqual('series', a[2]) | |
| 2036 self.assertNotEqual(ids[3], a[3]) | |
| 2037 | |
| 2038 a = ExtractDicomTags(Modify(u, { 'StudyInstanceUID' : 'study' }), tags) | |
| 2039 self.assertEqual(ids[0], a[0]) | |
| 2040 self.assertEqual('study', a[1]) | |
| 2041 self.assertNotEqual(ids[2], a[2]) | |
| 2042 self.assertNotEqual(ids[3], a[3]) | |
| 2043 | |
| 2044 a = ExtractDicomTags(Modify(u, { 'PatientID' : 'patient' }), tags) | |
| 2045 self.assertEqual('patient', a[0]) | |
| 2046 self.assertNotEqual(ids[1], a[1]) | |
| 2047 self.assertNotEqual(ids[2], a[2]) | |
| 2048 self.assertNotEqual(ids[3], a[3]) | |
| 2049 | |
| 2050 a = ExtractDicomTags(Modify(u, { 'PatientID' : 'patient', | |
| 2051 'StudyInstanceUID' : 'study', | |
| 2052 'SeriesInstanceUID' : 'series', | |
| 2053 'SOPInstanceUID' : 'instance' }), tags) | |
| 2054 self.assertEqual('patient', a[0]) | |
| 2055 self.assertEqual('study', a[1]) | |
| 2056 self.assertEqual('series', a[2]) | |
| 2057 self.assertEqual('instance', a[3]) | |
| 2058 | |
| 2059 self.assertEqual(1, len(DoGet(_REMOTE, '/instances'))) | |
| 2060 | |
| 2061 | |
| 2062 def test_instances_tags(self): | |
| 2063 a = UploadInstance(_REMOTE, 'Knee/T1/IM-0001-0001.dcm')['ID'] | |
| 2064 b = UploadInstance(_REMOTE, 'Knee/T2/IM-0001-0001.dcm')['ID'] | |
| 2065 #a = UploadInstance(_REMOTE, 'Cardiac/MR.X.1.2.276.0.7230010.3.1.4.2831157719.2256.1336386937.676343')['ID'] | |
| 2066 #b = UploadInstance(_REMOTE, 'Cardiac/MR.X.1.2.276.0.7230010.3.1.4.2831157719.2256.1336386925.676329')['ID'] | |
| 2067 | |
| 2068 i = DoGet(_REMOTE, '/patients/%s/instances-tags?simplify' % DoGet(_REMOTE, '/patients')[0]) | |
| 2069 self.assertEqual(2, len(i)) | |
| 2070 self.assertEqual('887', i[i.keys()[0]]['PatientID']) | |
| 2071 self.assertEqual('887', i[i.keys()[1]]['PatientID']) | |
| 2072 | |
| 2073 i = DoGet(_REMOTE, '/patients/%s/instances-tags?simplify' % DoGet(_REMOTE, '/studies')[0]) | |
| 2074 self.assertEqual(2, len(i)) | |
| 2075 self.assertEqual('887', i[i.keys()[0]]['PatientID']) | |
| 2076 self.assertEqual('887', i[i.keys()[1]]['PatientID']) | |
| 2077 | |
| 2078 self.assertEqual(2, len(DoGet(_REMOTE, '/series'))) | |
| 2079 i = DoGet(_REMOTE, '/patients/%s/instances-tags?simplify' % DoGet(_REMOTE, '/series')[0]) | |
| 2080 self.assertEqual(1, len(i)) | |
| 2081 self.assertEqual('887', i[i.keys()[0]]['PatientID']) | |
| 2082 | |
| 2083 i = DoGet(_REMOTE, '/patients/%s/instances-tags?simplify' % DoGet(_REMOTE, '/series')[1]) | |
| 2084 self.assertEqual(1, len(i)) | |
| 2085 self.assertEqual('887', i[i.keys()[0]]['PatientID']) | |
| 2086 | |
|
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2087 i = DoGet(_REMOTE, '/patients/%s/instances-tags?short' % DoGet(_REMOTE, '/series')[1]) |
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2088 self.assertEqual(1, len(i)) |
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2089 self.assertEqual('887', i[i.keys()[0]]['0010,0020']) |
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2090 |
| 14 | 2091 |
| 2092 def test_lookup(self): | |
| 2093 a = DoPost(_REMOTE, '/tools/lookup', 'ozp00SjY2xG') | |
| 2094 self.assertEqual(0, len(a)) | |
| 2095 | |
| 2096 UploadInstance(_REMOTE, 'DummyCT.dcm') | |
| 2097 | |
| 2098 a = DoPost(_REMOTE, '/tools/lookup', 'ozp00SjY2xG') | |
| 2099 self.assertEqual(1, len(a)) | |
| 2100 self.assertEqual('Patient', a[0]['Type']) | |
| 2101 self.assertEqual('6816cb19-844d5aee-85245eba-28e841e6-2414fae2', a[0]['ID']) | |
| 2102 self.assertEqual('/patients/%s' % a[0]['ID'], a[0]['Path']) | |
| 2103 | |
| 2104 a = DoPost(_REMOTE, '/tools/lookup', '1.2.840.113619.2.176.2025.1499492.7391.1171285944.390') | |
| 2105 self.assertEqual(1, len(a)) | |
| 2106 self.assertEqual('Study', a[0]['Type']) | |
| 2107 self.assertEqual('b9c08539-26f93bde-c81ab0d7-bffaf2cb-a4d0bdd0', a[0]['ID']) | |
| 2108 self.assertEqual('/studies/%s' % a[0]['ID'], a[0]['Path']) | |
| 2109 | |
| 2110 a = DoPost(_REMOTE, '/tools/lookup', '1.2.840.113619.2.176.2025.1499492.7391.1171285944.394') | |
| 2111 self.assertEqual(1, len(a)) | |
| 2112 self.assertEqual('Series', a[0]['Type']) | |
| 2113 self.assertEqual('f2635388-f01d497a-15f7c06b-ad7dba06-c4c599fe', a[0]['ID']) | |
| 2114 self.assertEqual('/series/%s' % a[0]['ID'], a[0]['Path']) | |
| 2115 | |
| 2116 a = DoPost(_REMOTE, '/tools/lookup', '1.2.840.113619.2.176.2025.1499492.7040.1171286242.109') | |
| 2117 self.assertEqual(1, len(a)) | |
| 2118 self.assertEqual('Instance', a[0]['Type']) | |
| 2119 self.assertEqual('66a662ce-7430e543-bad44d47-0dc5a943-ec7a538d', a[0]['ID']) | |
| 2120 self.assertEqual('/instances/%s' % a[0]['ID'], a[0]['Path']) | |
| 2121 | |
| 2122 DropOrthanc(_REMOTE) | |
| 2123 a = DoPost(_REMOTE, '/tools/lookup', '3113719P') | |
| 2124 self.assertEqual(0, len(a)) | |
| 2125 | |
| 15 | 2126 |
| 2127 def test_autorouting(self): | |
| 2128 knee1 = 'Knee/T1/IM-0001-0001.dcm' | |
| 2129 knee2 = 'Knee/T2/IM-0001-0002.dcm' | |
| 2130 other = 'Brainix/Flair/IM-0001-0001.dcm' | |
| 2131 | |
| 2132 # Check that this version is >= 0.8.0 | |
| 2133 self.assertTrue(IsDefinedInLua(_REMOTE, '_InitializeJob')) | |
| 2134 self.assertTrue('orthanctest' in DoGet(_REMOTE, '/modalities')) | |
| 2135 | |
| 2136 UploadInstance(_REMOTE, knee1) | |
| 2137 self.assertEqual(0, len(DoGet(_LOCAL, '/instances'))) | |
| 2138 | |
| 2139 DropOrthanc(_REMOTE) | |
| 2140 DropOrthanc(_LOCAL) | |
| 174 | 2141 InstallLuaScriptFromPath(_REMOTE, 'Lua/Autorouting.lua') |
| 15 | 2142 UploadInstance(_REMOTE, knee1) |
| 2143 UploadInstance(_REMOTE, knee2) | |
| 2144 UploadInstance(_REMOTE, other) | |
| 2145 WaitEmpty(_REMOTE) | |
| 174 | 2146 UninstallLuaCallbacks(_REMOTE) |
| 15 | 2147 self.assertEqual(3, len(DoGet(_LOCAL, '/instances'))) |
| 2148 | |
| 2149 DropOrthanc(_REMOTE) | |
| 2150 DropOrthanc(_LOCAL) | |
| 174 | 2151 InstallLuaScriptFromPath(_REMOTE, 'Lua/AutoroutingConditional.lua') |
| 15 | 2152 UploadInstance(_REMOTE, knee1) |
| 2153 UploadInstance(_REMOTE, knee2) | |
| 2154 UploadInstance(_REMOTE, other) | |
| 2155 WaitEmpty(_REMOTE) | |
| 174 | 2156 UninstallLuaCallbacks(_REMOTE) |
| 15 | 2157 self.assertEqual(2, len(DoGet(_LOCAL, '/instances'))) |
| 2158 | |
| 2159 DropOrthanc(_REMOTE) | |
| 2160 DropOrthanc(_LOCAL) | |
| 174 | 2161 InstallLuaScriptFromPath(_REMOTE, 'Lua/AutoroutingModification.lua') |
| 15 | 2162 UploadInstance(_REMOTE, knee1) |
| 2163 WaitEmpty(_REMOTE) | |
| 174 | 2164 UninstallLuaCallbacks(_REMOTE) |
| 15 | 2165 i = DoGet(_LOCAL, '/instances') |
| 2166 self.assertEqual(1, len(i)) | |
| 2167 | |
| 2168 with tempfile.NamedTemporaryFile(delete = True) as f: | |
| 2169 f.write(DoGet(_LOCAL, '/instances/%s/file' % i[0])) | |
| 2170 f.flush() | |
| 45 | 2171 routed = subprocess.check_output([ FindExecutable('dcm2xml'), f.name ]) |
| 15 | 2172 self.assertEqual('My Medical Device', re.search('"StationName">(.*?)<', routed).group(1).strip()) |
| 2173 self.assertEqual(None, re.search('"MilitaryRank"', routed)) | |
| 2174 self.assertEqual(None, re.search('"0051,0010"', routed)) # A private tag | |
| 17 | 2175 |
| 2176 | |
| 2177 def test_storescu_rf(self): | |
| 2178 i = UploadInstance(_REMOTE, 'KarstenHilbertRF.dcm')['ID'] | |
| 2179 self.assertEqual(0, len(DoGet(_LOCAL, '/instances'))) | |
| 2180 j = DoPost(_REMOTE, '/modalities/orthanctest/store', str(i), 'text/plain') | |
| 2181 self.assertEqual(1, len(DoGet(_LOCAL, '/instances'))) | |
| 18 | 2182 |
| 2183 | |
| 2184 def test_anonymize_instance(self): | |
| 2185 def AnonymizeAndUpload(instanceId, parameters): | |
| 2186 return DoPost(_REMOTE, '/instances', DoPost(_REMOTE, '/instances/%s/anonymize' % instanceId, parameters, | |
| 2187 'application/json'), 'application/dicom')['ID'] | |
| 2188 | |
| 2189 def ModifyAndUpload(instanceId, parameters): | |
| 2190 return DoPost(_REMOTE, '/instances', DoPost(_REMOTE, '/instances/%s/modify' % instanceId, parameters, | |
| 2191 'application/json'), 'application/dicom')['ID'] | |
| 2192 | |
| 2193 a = UploadInstance(_REMOTE, 'PrivateMDNTags.dcm')['ID'] | |
| 2194 s1 = DoGet(_REMOTE, '/instances/%s/content/PatientName' % a) | |
| 2195 s2 = DoGet(_REMOTE, '/instances/%s/content/00e1-10c2' % a) # Some private tag | |
| 2196 s3 = DoGet(_REMOTE, '/instances/%s/content/StudyDescription' % a) | |
| 2197 s4 = DoGet(_REMOTE, '/instances/%s/content/SeriesDescription' % a) | |
| 2198 s5 = DoGet(_REMOTE, '/instances/%s/content/InstitutionName' % a) | |
| 2199 | |
| 2200 b = AnonymizeAndUpload(a, '{}') | |
| 2201 self.assertNotEqual(s1, DoGet(_REMOTE, '/instances/%s/content/PatientName' % b)) | |
| 2202 self.assertRaises(Exception, lambda: DoGet(_REMOTE, '/instances/%s/content/00e1-10c2' % b)) | |
| 2203 | |
| 2204 # Keep private tag (only OK since Orthanc 0.8.0) | |
| 2205 b = AnonymizeAndUpload(a, '{"Keep":["00e1-10c2"]}') | |
| 2206 self.assertNotEqual(s1, DoGet(_REMOTE, '/instances/%s/content/PatientName' % b)) | |
| 2207 self.assertEqual(s2, DoGet(_REMOTE, '/instances/%s/content/00e1-10c2' % b)) | |
| 2208 | |
| 2209 b = AnonymizeAndUpload(a, '{"Keep":["00e1,10c2","PatientName"]}') | |
| 2210 self.assertEqual(s1, DoGet(_REMOTE, '/instances/%s/content/PatientName' % b)) | |
| 2211 self.assertEqual(s2, DoGet(_REMOTE, '/instances/%s/content/00e1-10c2' % b)) | |
| 2212 | |
| 2213 b = AnonymizeAndUpload(a, '{"Keep":["PatientName"],"Replace":{"00e1,10c2":"Hello"}}') | |
| 2214 self.assertEqual(s1, DoGet(_REMOTE, '/instances/%s/content/PatientName' % b)) | |
| 2215 self.assertTrue(DoGet(_REMOTE, '/instances/%s/content/00e1-10c2' % b).startswith('Hello')) | |
| 2216 | |
| 2217 # Examples from the Wiki | |
|
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|
2218 b = AnonymizeAndUpload(a, '{"Replace":{"PatientName":"hello","0010-0020":"world"},"Keep":["StudyDescription", "SeriesDescription"],"KeepPrivateTags": true,"Force":true}') |
| 18 | 2219 self.assertEqual('hello', DoGet(_REMOTE, '/instances/%s/content/0010-0010' % b).strip()) |
| 2220 self.assertEqual('world', DoGet(_REMOTE, '/instances/%s/content/PatientID' % b).strip()) | |
| 2221 self.assertEqual(s3, DoGet(_REMOTE, '/instances/%s/content/0008,1030' % b)) | |
| 2222 self.assertEqual(s4, DoGet(_REMOTE, '/instances/%s/content/0008,103e' % b)) | |
| 2223 self.assertEqual(s4, DoGet(_REMOTE, '/instances/%s/content/0008-103E' % b)) | |
| 2224 self.assertEqual(s2, DoGet(_REMOTE, '/instances/%s/content/00e1-10c2' % b)) | |
| 2225 DoGet(_REMOTE, '/instances/%s/content/InstitutionName' % a) | |
| 2226 self.assertRaises(Exception, lambda: DoGet(_REMOTE, '/instances/%s/content/InstitutionName' % b)) | |
| 2227 | |
|
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|
2228 b = ModifyAndUpload(a, '{"Replace":{"PatientName":"hello","PatientID":"world"},"Remove":["InstitutionName"],"RemovePrivateTags": true,"Force":true}') |
| 18 | 2229 self.assertEqual('hello', DoGet(_REMOTE, '/instances/%s/content/0010-0010' % b).strip()) |
| 2230 self.assertEqual('world', DoGet(_REMOTE, '/instances/%s/content/PatientID' % b).strip()) | |
| 2231 self.assertEqual(s3, DoGet(_REMOTE, '/instances/%s/content/0008,1030' % b)) | |
| 2232 self.assertEqual(s4, DoGet(_REMOTE, '/instances/%s/content/0008,103e' % b)) | |
| 2233 self.assertRaises(Exception, lambda: DoGet(_REMOTE, '/instances/%s/content/00e1-10c2' % b)) | |
| 2234 self.assertRaises(Exception, lambda: DoGet(_REMOTE, '/instances/%s/content/InstitutionName' % b)) | |
| 2235 | |
|
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|
2236 b = ModifyAndUpload(a, '{"Replace":{"PatientName":"hello","PatientID":"world"},"Force":true}') |
| 18 | 2237 self.assertEqual('hello', DoGet(_REMOTE, '/instances/%s/content/0010-0010' % b).strip()) |
| 2238 self.assertEqual('world', DoGet(_REMOTE, '/instances/%s/content/PatientID' % b).strip()) | |
| 2239 self.assertEqual(s2, DoGet(_REMOTE, '/instances/%s/content/00e1,10c2' % b)) | |
| 2240 self.assertEqual(s3, DoGet(_REMOTE, '/instances/%s/content/0008,1030' % b)) | |
| 2241 self.assertEqual(s4, DoGet(_REMOTE, '/instances/%s/content/0008-103E' % b)) | |
| 2242 self.assertEqual(s5, DoGet(_REMOTE, '/instances/%s/content/InstitutionName' % b)) | |
| 2243 | |
| 2244 | |
| 2245 # Test modify non-existing | |
| 2246 i = DoPost(_REMOTE, '/tools/create-dicom', | |
| 2247 json.dumps({ | |
| 2248 'PatientName' : 'Jodogne', | |
| 2249 'Modality' : 'CT', | |
| 2250 }))['ID'] | |
| 2251 | |
| 2252 self.assertEqual('Jodogne', DoGet(_REMOTE, '/instances/%s/content/PatientName' % i).strip()) | |
| 2253 self.assertRaises(Exception, lambda: DoGet(_REMOTE, '/instances/%s/content/StudyDescription' % i)) | |
| 2254 self.assertEqual('CT', DoGet(_REMOTE, '/instances/%s/content/Modality' % i).strip()) | |
| 2255 | |
| 2256 b = ModifyAndUpload(i, '{"Replace":{"StudyDescription":"hello","Modality":"world"}}') | |
| 2257 self.assertEqual('Jodogne', DoGet(_REMOTE, '/instances/%s/content/PatientName' % b).strip()) | |
| 2258 self.assertEqual('hello', DoGet(_REMOTE, '/instances/%s/content/StudyDescription' % b).strip()) | |
| 2259 self.assertEqual('world', DoGet(_REMOTE, '/instances/%s/content/Modality' % b).strip()) | |
| 2260 | |
|
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2261 |
|
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|
2262 def test_incoming_jpeg(self): |
|
61
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|
2263 def storescu(image, acceptUnknownSopClassUid): |
|
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|
2264 if acceptUnknownSopClassUid: |
|
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2265 tmp = [ '-xf', GetDatabasePath('UnknownSopClassUid.cfg'), 'Default' ] |
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2266 else: |
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2267 tmp = [ '-xs' ] |
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2268 |
|
21
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|
2269 with open(os.devnull, 'w') as FNULL: |
|
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|
2270 subprocess.check_call([ FindExecutable('storescu') ] + tmp + |
|
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|
2271 [ _REMOTE['Server'], str(_REMOTE['DicomPort']), |
|
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|
2272 GetDatabasePath(image) ], |
|
21
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|
2273 stderr = FNULL) |
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|
2274 |
|
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|
2275 self.assertEqual(0, len(DoGet(_REMOTE, '/patients'))) |
|
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2276 |
|
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2277 if IsOrthancVersionAbove(_REMOTE, 1, 9, 0): |
|
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2278 a = DoPut(_REMOTE, '/tools/accepted-transfer-syntaxes', [ |
|
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2279 '1.2.840.10008.1.2', '1.2.840.10008.1.2.1', '1.2.840.10008.1.2.2' |
|
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2280 ]) |
|
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2281 self.assertTrue('1.2.840.10008.1.2' in a) |
|
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2282 self.assertTrue('1.2.840.10008.1.2.1' in a) |
|
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2283 self.assertTrue('1.2.840.10008.1.2.2' in a) |
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2284 self.assertEqual(3, len(a)) |
|
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2285 self.assertRaises(Exception, lambda: DoPut(_REMOTE, '/tools/unknown-sop-class-accepted', 'nope')) |
|
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2286 DoPut(_REMOTE, '/tools/unknown-sop-class-accepted', '0') |
|
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2287 self.assertEqual(0, DoGet(_REMOTE, '/tools/unknown-sop-class-accepted')) |
|
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2288 else: |
|
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2289 InstallLuaScriptFromPath(_REMOTE, 'Lua/TransferSyntaxDisable.lua') |
|
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|
2290 |
|
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|
2291 self.assertRaises(Exception, lambda: storescu('Knix/Loc/IM-0001-0001.dcm', False)) |
|
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|
2292 self.assertRaises(Exception, lambda: storescu('UnknownSopClassUid.dcm', True)) |
|
21
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2293 self.assertEqual(0, len(DoGet(_REMOTE, '/patients'))) |
|
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2294 |
|
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|
2295 if IsOrthancVersionAbove(_REMOTE, 1, 9, 0): |
| 374 | 2296 a = DoPut(_REMOTE, '/tools/accepted-transfer-syntaxes', '*', 'text/plain') |
|
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2297 self.assertGreaterEqual(42, len(a)) |
|
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2298 DoPut(_REMOTE, '/tools/unknown-sop-class-accepted', 'true') |
|
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|
2299 self.assertEqual(1, DoGet(_REMOTE, '/tools/unknown-sop-class-accepted')) |
|
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2300 else: |
|
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2301 InstallLuaScriptFromPath(_REMOTE, 'Lua/TransferSyntaxEnable.lua') |
|
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|
2302 |
|
62
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|
2303 DoPost(_REMOTE, '/tools/execute-script', "print('All special transfer syntaxes are now accepted')") |
|
61
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|
2304 storescu('Knix/Loc/IM-0001-0001.dcm', False) |
|
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|
2305 storescu('UnknownSopClassUid.dcm', True) |
|
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|
2306 self.assertEqual(2, len(DoGet(_REMOTE, '/patients'))) |
|
21
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|
2307 |
|
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|
2308 |
|
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|
2309 def test_storescu_jpeg(self): |
|
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2310 self.assertEqual(0, len(DoGet(_REMOTE, '/exports')['Exports'])) |
|
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|
2311 |
|
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|
2312 knixStudy = 'b9c08539-26f93bde-c81ab0d7-bffaf2cb-a4d0bdd0' |
| 64 | 2313 i = UploadInstance(_REMOTE, 'Knix/Loc/IM-0001-0001.dcm')['ID'] |
| 2314 | |
| 2315 # This is JPEG lossless | |
|
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|
2316 self.assertEqual('1.2.840.10008.1.2.4.70', DoGet(_REMOTE, '/instances/%s/header' % i)['0002,0010']['Value']) |
| 64 | 2317 self.assertEqual('1.2.840.10008.1.2.4.70', DoGet(_REMOTE, '/instances/%s/header?simplify' % i)['TransferSyntaxUID']) |
|
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2318 self.assertEqual('1.2.840.10008.1.2.4.70', DoGet(_REMOTE, '/instances/%s/header?short' % i)['0002,0010']) |
| 64 | 2319 |
|
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2320 UploadInstance(_REMOTE, 'Knix/Loc/IM-0001-0002.dcm') |
|
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|
2321 UploadInstance(_REMOTE, 'Knix/Loc/IM-0001-0003.dcm') |
|
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2322 |
|
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|
2323 a = UploadInstance(_REMOTE, 'Brainix/Flair/IM-0001-0001.dcm')['ID'] |
|
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2324 b = UploadInstance(_REMOTE, 'ColorTestImageJ.dcm')['ID'] |
|
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2325 self.assertEqual(0, len(DoGet(_LOCAL, '/instances'))) |
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|
2326 DoPost(_REMOTE, '/modalities/orthanctest/store', [ knixStudy, a, b ]) |
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2327 self.assertEqual(5, len(DoGet(_LOCAL, '/instances'))) |
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|
2328 |
|
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|
2329 self.assertEqual(3, len(DoGet(_REMOTE, '/exports')['Exports'])) |
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2330 |
|
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|
2331 DropOrthanc(_REMOTE) |
|
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|
2332 self.assertEqual(0, len(DoGet(_REMOTE, '/exports')['Exports'])) |
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2333 |
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|
2334 |
|
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|
2335 def test_pixel_data(self): |
|
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2336 jpeg = UploadInstance(_REMOTE, 'Knix/Loc/IM-0001-0001.dcm')['ID'] |
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2337 color = UploadInstance(_REMOTE, 'ColorTestImageJ.dcm')['ID'] |
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|
2338 phenix = UploadInstance(_REMOTE, 'Phenix/IM-0001-0001.dcm')['ID'] |
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|
2339 |
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|
2340 phenixSize = 358 * 512 * 2 |
|
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|
2341 colorSize = 1000 * 1000 * 3 |
|
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|
2342 jpegSize = 51918 |
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2343 |
|
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changeset
|
2344 self.assertEqual(1, len(DoGet(_REMOTE, '/instances/%s/content/7fe0-0010' % phenix))) |
|
2a29bcff60a7
tests of image decoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
18
diff
changeset
|
2345 self.assertEqual(1, len(DoGet(_REMOTE, '/instances/%s/content/7fe0-0010' % color))) |
|
2a29bcff60a7
tests of image decoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
18
diff
changeset
|
2346 self.assertEqual(2, len(DoGet(_REMOTE, '/instances/%s/content/7fe0-0010' % jpeg))) |
|
2a29bcff60a7
tests of image decoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
18
diff
changeset
|
2347 |
|
2a29bcff60a7
tests of image decoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
18
diff
changeset
|
2348 self.assertEqual(0, len(DoGet(_REMOTE, '/instances/%s/content/7fe0-0010/0' % jpeg))) |
|
2a29bcff60a7
tests of image decoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
18
diff
changeset
|
2349 self.assertEqual(jpegSize, len(DoGet(_REMOTE, '/instances/%s/content/7fe0-0010/1' % jpeg))) |
|
2a29bcff60a7
tests of image decoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
18
diff
changeset
|
2350 |
|
2a29bcff60a7
tests of image decoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
18
diff
changeset
|
2351 self.assertEqual(phenixSize, len(DoGet(_REMOTE, '/instances/%s/content/7fe0-0010/0' % phenix))) |
|
2a29bcff60a7
tests of image decoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
18
diff
changeset
|
2352 self.assertEqual(colorSize, len(DoGet(_REMOTE, '/instances/%s/content/7fe0-0010/0' % color))) |
|
2a29bcff60a7
tests of image decoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
18
diff
changeset
|
2353 |
|
2a29bcff60a7
tests of image decoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
18
diff
changeset
|
2354 |
|
2a29bcff60a7
tests of image decoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
18
diff
changeset
|
2355 def test_decode_brainix(self): |
|
2a29bcff60a7
tests of image decoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
18
diff
changeset
|
2356 brainix = [ |
|
2a29bcff60a7
tests of image decoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
18
diff
changeset
|
2357 UploadInstance(_REMOTE, 'Brainix/Epi/IM-0001-0001.dcm')['ID'], # (*) |
|
2a29bcff60a7
tests of image decoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
18
diff
changeset
|
2358 UploadInstance(_REMOTE, 'Formats/JpegLossless.dcm')['ID'], # JPEG-LS, same as (*) (since Orthanc 0.7.6) |
|
2a29bcff60a7
tests of image decoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
18
diff
changeset
|
2359 UploadInstance(_REMOTE, 'Formats/Jpeg.dcm')['ID'], # JPEG, same as (*) (since Orthanc 0.7.6) |
|
2a29bcff60a7
tests of image decoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
18
diff
changeset
|
2360 ] |
|
2a29bcff60a7
tests of image decoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
18
diff
changeset
|
2361 h = '6fb11b932d535c2be04beabd99793ff8' |
|
2a29bcff60a7
tests of image decoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
18
diff
changeset
|
2362 maxValue = 426.0 |
|
2a29bcff60a7
tests of image decoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
18
diff
changeset
|
2363 |
|
2a29bcff60a7
tests of image decoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
18
diff
changeset
|
2364 truth = Image.open(GetDatabasePath('Formats/Brainix.png')) |
|
2a29bcff60a7
tests of image decoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
18
diff
changeset
|
2365 for i in brainix: |
|
2a29bcff60a7
tests of image decoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
18
diff
changeset
|
2366 self.AssertSameImages(truth.getdata(), '/instances/%s/image-int16' % i) |
|
2a29bcff60a7
tests of image decoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
18
diff
changeset
|
2367 self.AssertSameImages(truth.getdata(), '/instances/%s/image-uint16' % i) |
|
2a29bcff60a7
tests of image decoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
18
diff
changeset
|
2368 |
|
2a29bcff60a7
tests of image decoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
18
diff
changeset
|
2369 truth2 = map(lambda x: min(255, x), truth.getdata()) |
|
2a29bcff60a7
tests of image decoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
18
diff
changeset
|
2370 for i in brainix: |
|
2a29bcff60a7
tests of image decoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
18
diff
changeset
|
2371 self.AssertSameImages(truth2, '/instances/%s/image-uint8' % i) |
|
2a29bcff60a7
tests of image decoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
18
diff
changeset
|
2372 |
|
2a29bcff60a7
tests of image decoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
18
diff
changeset
|
2373 truth2 = map(lambda x: x * 255.0 / maxValue, truth.getdata()) |
|
2a29bcff60a7
tests of image decoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
18
diff
changeset
|
2374 for i in brainix: |
|
2a29bcff60a7
tests of image decoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
18
diff
changeset
|
2375 self.AssertSameImages(truth2, '/instances/%s/preview' % i) |
|
2a29bcff60a7
tests of image decoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
18
diff
changeset
|
2376 |
|
2a29bcff60a7
tests of image decoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
18
diff
changeset
|
2377 for i in brainix: |
|
2a29bcff60a7
tests of image decoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
18
diff
changeset
|
2378 self.assertEqual(h, ComputeMD5(DoGet(_REMOTE, '/instances/%s/matlab' % i))) |
|
2a29bcff60a7
tests of image decoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
18
diff
changeset
|
2379 |
|
2a29bcff60a7
tests of image decoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
18
diff
changeset
|
2380 |
|
2a29bcff60a7
tests of image decoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
18
diff
changeset
|
2381 def test_decode_color(self): |
|
2a29bcff60a7
tests of image decoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
18
diff
changeset
|
2382 imagej = UploadInstance(_REMOTE, 'ColorTestImageJ.dcm')['ID'] |
|
2a29bcff60a7
tests of image decoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
18
diff
changeset
|
2383 color = UploadInstance(_REMOTE, 'ColorTestMalaterre.dcm')['ID'] |
|
2a29bcff60a7
tests of image decoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
18
diff
changeset
|
2384 |
|
2a29bcff60a7
tests of image decoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
18
diff
changeset
|
2385 for i in [ imagej, color ]: |
|
2a29bcff60a7
tests of image decoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
18
diff
changeset
|
2386 for j in [ 'image-uint8', 'image-uint16', 'image-int16' ]: |
|
2a29bcff60a7
tests of image decoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
18
diff
changeset
|
2387 self.assertRaises(Exception, lambda: DoGet(_REMOTE, '/instances/%s/%s' % (i, j))) |
|
2a29bcff60a7
tests of image decoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
18
diff
changeset
|
2388 |
|
2a29bcff60a7
tests of image decoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
18
diff
changeset
|
2389 self.assertEqual('c14c687f7a1ea9fe022479fc87c67274', ComputeMD5(DoGet(_REMOTE, '/instances/%s/preview' % imagej))) |
|
2a29bcff60a7
tests of image decoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
18
diff
changeset
|
2390 self.assertEqual('a87d122918a56f803bcfe9d2586b9125', ComputeMD5(DoGet(_REMOTE, '/instances/%s/preview' % color))) |
|
2a29bcff60a7
tests of image decoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
18
diff
changeset
|
2391 |
|
2a29bcff60a7
tests of image decoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
18
diff
changeset
|
2392 self.assertEqual('30cc46bfa7aba77a40e4178f6184c25a', ComputeMD5(DoGet(_REMOTE, '/instances/%s/matlab' % imagej))) |
|
2a29bcff60a7
tests of image decoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
18
diff
changeset
|
2393 self.assertEqual('ff195005cef06b59666fd220a9b4cd9a', ComputeMD5(DoGet(_REMOTE, '/instances/%s/matlab' % color))) |
|
2a29bcff60a7
tests of image decoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
18
diff
changeset
|
2394 |
|
2a29bcff60a7
tests of image decoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
18
diff
changeset
|
2395 |
|
2a29bcff60a7
tests of image decoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
18
diff
changeset
|
2396 def test_decode_rf(self): |
|
2a29bcff60a7
tests of image decoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
18
diff
changeset
|
2397 rf = UploadInstance(_REMOTE, 'KarstenHilbertRF.dcm')['ID'] |
|
2a29bcff60a7
tests of image decoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
18
diff
changeset
|
2398 truth = Image.open(GetDatabasePath('Formats/KarstenHilbertRF.png')) |
|
2a29bcff60a7
tests of image decoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
18
diff
changeset
|
2399 |
|
2a29bcff60a7
tests of image decoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
18
diff
changeset
|
2400 self.AssertSameImages(truth.getdata(), '/instances/%s/image-uint8' % rf) |
|
2a29bcff60a7
tests of image decoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
18
diff
changeset
|
2401 self.AssertSameImages(truth.getdata(), '/instances/%s/image-uint16' % rf) |
|
2a29bcff60a7
tests of image decoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
18
diff
changeset
|
2402 self.AssertSameImages(truth.getdata(), '/instances/%s/image-int16' % rf) |
|
2a29bcff60a7
tests of image decoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
18
diff
changeset
|
2403 self.AssertSameImages(truth.getdata(), '/instances/%s/preview' % rf) |
|
2a29bcff60a7
tests of image decoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
18
diff
changeset
|
2404 |
|
2a29bcff60a7
tests of image decoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
18
diff
changeset
|
2405 self.assertEqual('42254d70efd2f4a1b8f3455909689f0e', ComputeMD5(DoGet(_REMOTE, '/instances/%s/matlab' % rf))) |
|
2a29bcff60a7
tests of image decoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
18
diff
changeset
|
2406 |
|
2a29bcff60a7
tests of image decoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
18
diff
changeset
|
2407 |
|
2a29bcff60a7
tests of image decoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
18
diff
changeset
|
2408 def test_decode_multiframe(self): |
|
2a29bcff60a7
tests of image decoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
18
diff
changeset
|
2409 mf = UploadInstance(_REMOTE, 'Multiframe.dcm')['ID'] |
|
2a29bcff60a7
tests of image decoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
18
diff
changeset
|
2410 |
|
2a29bcff60a7
tests of image decoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
18
diff
changeset
|
2411 # Test the first frame |
|
2a29bcff60a7
tests of image decoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
18
diff
changeset
|
2412 truth = Image.open(GetDatabasePath('Formats/Multiframe0.png')) |
|
2a29bcff60a7
tests of image decoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
18
diff
changeset
|
2413 self.AssertSameImages(truth.getdata(), '/instances/%s/image-uint8' % mf) |
|
2a29bcff60a7
tests of image decoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
18
diff
changeset
|
2414 self.AssertSameImages(truth.getdata(), '/instances/%s/image-uint16' % mf) |
|
2a29bcff60a7
tests of image decoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
18
diff
changeset
|
2415 self.AssertSameImages(truth.getdata(), '/instances/%s/image-int16' % mf) |
|
2a29bcff60a7
tests of image decoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
18
diff
changeset
|
2416 self.AssertSameImages(truth.getdata(), '/instances/%s/preview' % mf) |
|
2a29bcff60a7
tests of image decoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
18
diff
changeset
|
2417 self.assertEqual('9812b99d93bbcd4e7684ded089b5dfb3', ComputeMD5(DoGet(_REMOTE, '/instances/%s/matlab' % mf))) |
|
2a29bcff60a7
tests of image decoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
18
diff
changeset
|
2418 |
|
2a29bcff60a7
tests of image decoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
18
diff
changeset
|
2419 self.AssertSameImages(truth.getdata(), '/instances/%s/frames/0/image-uint16' % mf) |
|
2a29bcff60a7
tests of image decoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
18
diff
changeset
|
2420 |
|
2a29bcff60a7
tests of image decoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
18
diff
changeset
|
2421 # Test the last frame |
|
2a29bcff60a7
tests of image decoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
18
diff
changeset
|
2422 truth = Image.open(GetDatabasePath('Formats/Multiframe75.png')) |
|
2a29bcff60a7
tests of image decoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
18
diff
changeset
|
2423 self.AssertSameImages(truth.getdata(), '/instances/%s/frames/75/image-uint16' % mf) |
|
2a29bcff60a7
tests of image decoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
18
diff
changeset
|
2424 |
|
2a29bcff60a7
tests of image decoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
18
diff
changeset
|
2425 |
|
2a29bcff60a7
tests of image decoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
18
diff
changeset
|
2426 def test_decode_signed(self): |
|
2a29bcff60a7
tests of image decoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
18
diff
changeset
|
2427 signed = UploadInstance(_REMOTE, 'SignedCT.dcm')['ID'] |
|
2a29bcff60a7
tests of image decoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
18
diff
changeset
|
2428 minValue = -2000 |
|
2a29bcff60a7
tests of image decoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
18
diff
changeset
|
2429 maxValue = 4042 |
|
2a29bcff60a7
tests of image decoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
18
diff
changeset
|
2430 |
|
2a29bcff60a7
tests of image decoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
18
diff
changeset
|
2431 truth = Image.open(GetDatabasePath('Formats/SignedCT.png')) |
|
2a29bcff60a7
tests of image decoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
18
diff
changeset
|
2432 self.AssertSameImages(truth.getdata(), '/instances/%s/image-int16' % signed) |
|
2a29bcff60a7
tests of image decoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
18
diff
changeset
|
2433 |
|
2a29bcff60a7
tests of image decoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
18
diff
changeset
|
2434 truth2 = map(lambda x: 0 if x >= 32768 else x, truth.getdata()) |
|
2a29bcff60a7
tests of image decoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
18
diff
changeset
|
2435 self.AssertSameImages(truth2, '/instances/%s/image-uint16' % signed) |
|
2a29bcff60a7
tests of image decoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
18
diff
changeset
|
2436 |
|
2a29bcff60a7
tests of image decoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
18
diff
changeset
|
2437 truth3 = map(lambda x: 255 if x >= 256 else x, truth2) |
|
2a29bcff60a7
tests of image decoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
18
diff
changeset
|
2438 self.AssertSameImages(truth3, '/instances/%s/image-uint8' % signed) |
|
2a29bcff60a7
tests of image decoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
18
diff
changeset
|
2439 |
|
2a29bcff60a7
tests of image decoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
18
diff
changeset
|
2440 tmp = map(lambda x: x - 65536 if x >= 32768 else x, truth.getdata()) |
|
2a29bcff60a7
tests of image decoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
18
diff
changeset
|
2441 tmp = map(lambda x: (255.0 * (x - minValue)) / (maxValue - minValue), tmp) |
|
2a29bcff60a7
tests of image decoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
18
diff
changeset
|
2442 self.AssertSameImages(tmp, '/instances/%s/preview' % signed) |
|
2a29bcff60a7
tests of image decoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
18
diff
changeset
|
2443 |
|
2a29bcff60a7
tests of image decoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
18
diff
changeset
|
2444 self.assertEqual('b57e6c872a3da50877c7da689b03a444', ComputeMD5(DoGet(_REMOTE, '/instances/%s/matlab' % signed))) |
| 22 | 2445 |
| 2446 | |
|
46
85b2e36ed392
explicit GoogleCode source
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
45
diff
changeset
|
2447 def test_googlecode_issue_32(self): |
|
92
dbcbffb889da
test_findscu_encoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
89
diff
changeset
|
2448 self.assertRaises(Exception, lambda: DoPut(_REMOTE, '/tools/default-encoding', 'nope')) |
|
dbcbffb889da
test_findscu_encoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
89
diff
changeset
|
2449 self.assertEqual('Windows1251', DoPut(_REMOTE, '/tools/default-encoding', 'Windows1251')) |
|
dbcbffb889da
test_findscu_encoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
89
diff
changeset
|
2450 self.assertEqual('Windows1251', DoGet(_REMOTE, '/tools/default-encoding')) |
|
dbcbffb889da
test_findscu_encoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
89
diff
changeset
|
2451 |
| 22 | 2452 f = UploadInstance(_REMOTE, 'Issue32.dcm')['ID'] |
| 2453 tags = DoGet(_REMOTE, '/instances/%s/tags?simplify' % f) | |
| 2454 self.assertEqual(u'Рентгенография', tags['SeriesDescription']) | |
| 2455 self.assertEqual(u'Таз', tags['BodyPartExamined']) | |
| 2456 self.assertEqual(u'Прямая', tags['ViewPosition']) | |
| 2457 | |
|
92
dbcbffb889da
test_findscu_encoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
89
diff
changeset
|
2458 # Replay the same test using Latin1 as default encoding: This must fail |
|
dbcbffb889da
test_findscu_encoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
89
diff
changeset
|
2459 self.assertEqual('Latin1', DoPut(_REMOTE, '/tools/default-encoding', 'Latin1')) |
|
dbcbffb889da
test_findscu_encoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
89
diff
changeset
|
2460 |
|
dbcbffb889da
test_findscu_encoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
89
diff
changeset
|
2461 DoDelete(_REMOTE, '/instances/%s' % f) |
|
dbcbffb889da
test_findscu_encoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
89
diff
changeset
|
2462 f = UploadInstance(_REMOTE, 'Issue32.dcm')['ID'] |
|
dbcbffb889da
test_findscu_encoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
89
diff
changeset
|
2463 tags = DoGet(_REMOTE, '/instances/%s/tags?simplify' % f) |
|
dbcbffb889da
test_findscu_encoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
89
diff
changeset
|
2464 self.assertNotEqual(u'Рентгенография', tags['SeriesDescription']) |
|
dbcbffb889da
test_findscu_encoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
89
diff
changeset
|
2465 |
| 314 | 2466 # Back to UTF-8 |
| 2467 self.assertEqual('Utf8', DoPut(_REMOTE, '/tools/default-encoding', 'Utf8')) | |
| 2468 | |
|
92
dbcbffb889da
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Sebastien Jodogne <s.jodogne@gmail.com>
parents:
89
diff
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|
2469 |
| 22 | 2470 def test_encodings(self): |
| 23 | 2471 # Latin-1 (ISO_IR 100) |
| 22 | 2472 brainix = UploadInstance(_REMOTE, 'Brainix/Epi/IM-0001-0001.dcm')['ID'] |
| 2473 tags = DoGet(_REMOTE, '/instances/%s/tags?simplify' % brainix) | |
| 2474 self.assertEqual(u'IRM cérébrale, neuro-crâne', tags['StudyDescription']) | |
| 23 | 2475 |
| 2476 # Latin-2 (ISO_IR 101) | |
| 2477 a = UploadInstance(_REMOTE, 'MarekLatin2.dcm')['ID'] | |
| 2478 i = DoGet(_REMOTE, '/instances/%s/simplified-tags' % a) | |
| 2479 # dcm2xml MarekLatin2.dcm | iconv -f latin2 -t utf-8 | xmllint --format - | |
| 2480 self.assertEqual('Imię i Nazwisko osoby opisującej', | |
| 2481 i['ContentSequence'][4]['ConceptNameCodeSequence'][0]['CodeMeaning'].encode('utf-8')) | |
| 2482 | |
|
26
040f6ef1394a
test_storescu_custom_aet
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
23
diff
changeset
|
2483 |
|
040f6ef1394a
test_storescu_custom_aet
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
23
diff
changeset
|
2484 def test_storescu_custom_aet(self): |
|
040f6ef1394a
test_storescu_custom_aet
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
23
diff
changeset
|
2485 # This tests a feature introduced in Orthanc 0.9.1: "Custom |
|
040f6ef1394a
test_storescu_custom_aet
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
23
diff
changeset
|
2486 # setting of the local AET during C-Store SCU (both in Lua and |
|
040f6ef1394a
test_storescu_custom_aet
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
23
diff
changeset
|
2487 # in the REST API)." |
|
040f6ef1394a
test_storescu_custom_aet
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
23
diff
changeset
|
2488 # https://groups.google.com/forum/#!msg/orthanc-users/o5qMULformU/wZjW2iSaMcAJ |
|
040f6ef1394a
test_storescu_custom_aet
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
23
diff
changeset
|
2489 |
|
040f6ef1394a
test_storescu_custom_aet
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
23
diff
changeset
|
2490 self.assertEqual(0, len(DoGet(_LOCAL, '/patients'))) |
|
040f6ef1394a
test_storescu_custom_aet
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
23
diff
changeset
|
2491 |
|
040f6ef1394a
test_storescu_custom_aet
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
23
diff
changeset
|
2492 a = UploadInstance(_REMOTE, 'Knee/T1/IM-0001-0001.dcm') |
|
040f6ef1394a
test_storescu_custom_aet
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
23
diff
changeset
|
2493 b = UploadInstance(_REMOTE, 'Knee/T1/IM-0001-0002.dcm') |
|
040f6ef1394a
test_storescu_custom_aet
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
23
diff
changeset
|
2494 c = UploadInstance(_REMOTE, 'Knee/T1/IM-0001-0003.dcm') |
|
040f6ef1394a
test_storescu_custom_aet
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
23
diff
changeset
|
2495 |
|
040f6ef1394a
test_storescu_custom_aet
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
23
diff
changeset
|
2496 j = DoPost(_REMOTE, '/modalities/orthanctest/store', { |
|
040f6ef1394a
test_storescu_custom_aet
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
23
diff
changeset
|
2497 'LocalAet' : 'YOP', |
|
040f6ef1394a
test_storescu_custom_aet
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
23
diff
changeset
|
2498 'Resources' : [ a['ID'], b['ID'] ] |
|
040f6ef1394a
test_storescu_custom_aet
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
23
diff
changeset
|
2499 }) |
|
040f6ef1394a
test_storescu_custom_aet
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
23
diff
changeset
|
2500 |
|
040f6ef1394a
test_storescu_custom_aet
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
23
diff
changeset
|
2501 self.assertEqual(2, len(DoGet(_LOCAL, '/instances'))) |
|
040f6ef1394a
test_storescu_custom_aet
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
23
diff
changeset
|
2502 self.assertEqual('YOP', DoGet(_LOCAL, '/instances/%s/metadata/RemoteAET' % a['ID'])) |
|
040f6ef1394a
test_storescu_custom_aet
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
23
diff
changeset
|
2503 |
|
040f6ef1394a
test_storescu_custom_aet
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
23
diff
changeset
|
2504 DropOrthanc(_LOCAL) |
|
040f6ef1394a
test_storescu_custom_aet
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
23
diff
changeset
|
2505 self.assertEqual(0, len(DoGet(_LOCAL, '/instances'))) |
|
040f6ef1394a
test_storescu_custom_aet
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
23
diff
changeset
|
2506 |
|
040f6ef1394a
test_storescu_custom_aet
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
23
diff
changeset
|
2507 j = DoPost(_REMOTE, '/modalities/orthanctest/store', { |
|
040f6ef1394a
test_storescu_custom_aet
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
23
diff
changeset
|
2508 'Resources' : [ c['ID'] ] |
|
040f6ef1394a
test_storescu_custom_aet
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
23
diff
changeset
|
2509 }) |
|
040f6ef1394a
test_storescu_custom_aet
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
23
diff
changeset
|
2510 |
|
040f6ef1394a
test_storescu_custom_aet
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
23
diff
changeset
|
2511 self.assertEqual(1, len(DoGet(_LOCAL, '/instances'))) |
|
040f6ef1394a
test_storescu_custom_aet
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
23
diff
changeset
|
2512 self.assertEqual('ORTHANC', DoGet(_LOCAL, '/instances/%s/metadata/RemoteAET' % c['ID'])) |
|
040f6ef1394a
test_storescu_custom_aet
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
23
diff
changeset
|
2513 |
|
040f6ef1394a
test_storescu_custom_aet
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
23
diff
changeset
|
2514 DropOrthanc(_REMOTE) |
|
040f6ef1394a
test_storescu_custom_aet
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
23
diff
changeset
|
2515 DropOrthanc(_LOCAL) |
|
040f6ef1394a
test_storescu_custom_aet
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
23
diff
changeset
|
2516 |
| 174 | 2517 InstallLuaScriptFromPath(_REMOTE, 'Lua/AutoroutingChangeAet.lua') |
|
26
040f6ef1394a
test_storescu_custom_aet
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
23
diff
changeset
|
2518 DoPost(_REMOTE, '/tools/execute-script', 'aet = "HELLO"', 'application/lua') |
|
040f6ef1394a
test_storescu_custom_aet
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
23
diff
changeset
|
2519 |
|
040f6ef1394a
test_storescu_custom_aet
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
23
diff
changeset
|
2520 self.assertEqual(0, len(DoGet(_LOCAL, '/instances'))) |
|
040f6ef1394a
test_storescu_custom_aet
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
23
diff
changeset
|
2521 UploadInstance(_REMOTE, 'Knee/T1/IM-0001-0001.dcm') |
|
040f6ef1394a
test_storescu_custom_aet
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
23
diff
changeset
|
2522 WaitEmpty(_REMOTE) |
|
040f6ef1394a
test_storescu_custom_aet
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
23
diff
changeset
|
2523 self.assertEqual(1, len(DoGet(_LOCAL, '/instances'))) |
|
040f6ef1394a
test_storescu_custom_aet
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
23
diff
changeset
|
2524 self.assertEqual('HELLO', DoGet(_LOCAL, '/instances/%s/metadata/RemoteAET' % a['ID'])) |
|
040f6ef1394a
test_storescu_custom_aet
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
23
diff
changeset
|
2525 |
|
040f6ef1394a
test_storescu_custom_aet
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
23
diff
changeset
|
2526 DoPost(_REMOTE, '/tools/execute-script', 'aet = nill', 'application/lua') |
|
040f6ef1394a
test_storescu_custom_aet
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
23
diff
changeset
|
2527 UploadInstance(_REMOTE, 'Knee/T1/IM-0001-0002.dcm') |
|
040f6ef1394a
test_storescu_custom_aet
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
23
diff
changeset
|
2528 WaitEmpty(_REMOTE) |
|
040f6ef1394a
test_storescu_custom_aet
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
23
diff
changeset
|
2529 self.assertEqual(2, len(DoGet(_LOCAL, '/instances'))) |
|
040f6ef1394a
test_storescu_custom_aet
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
23
diff
changeset
|
2530 self.assertEqual('ORTHANC', DoGet(_LOCAL, '/instances/%s/metadata/RemoteAET' % b['ID'])) |
|
34
1047d7bc5210
test limit and since arguments while retrieving DICOM resources in the REST API
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
28
diff
changeset
|
2531 |
|
1047d7bc5210
test limit and since arguments while retrieving DICOM resources in the REST API
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
28
diff
changeset
|
2532 def test_resources_since_limit(self): |
|
1047d7bc5210
test limit and since arguments while retrieving DICOM resources in the REST API
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
28
diff
changeset
|
2533 # Upload 16 instances |
|
1047d7bc5210
test limit and since arguments while retrieving DICOM resources in the REST API
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
28
diff
changeset
|
2534 for i in range(4): |
|
1047d7bc5210
test limit and since arguments while retrieving DICOM resources in the REST API
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
28
diff
changeset
|
2535 UploadInstance(_REMOTE, 'Brainix/Flair/IM-0001-000%d.dcm' % (i + 1)) |
|
1047d7bc5210
test limit and since arguments while retrieving DICOM resources in the REST API
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
28
diff
changeset
|
2536 UploadInstance(_REMOTE, 'Brainix/Epi/IM-0001-000%d.dcm' % (i + 1)) |
|
1047d7bc5210
test limit and since arguments while retrieving DICOM resources in the REST API
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
changeset
|
2537 UploadInstance(_REMOTE, 'Knee/T1/IM-0001-000%d.dcm' % (i + 1)) |
|
1047d7bc5210
test limit and since arguments while retrieving DICOM resources in the REST API
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
28
diff
changeset
|
2538 UploadInstance(_REMOTE, 'Knee/T2/IM-0001-000%d.dcm' % (i + 1)) |
|
1047d7bc5210
test limit and since arguments while retrieving DICOM resources in the REST API
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
28
diff
changeset
|
2539 |
|
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test limit and since arguments while retrieving DICOM resources in the REST API
Sebastien Jodogne <s.jodogne@gmail.com>
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28
diff
changeset
|
2540 self.assertEqual(2, len(DoGet(_REMOTE, '/patients'))) |
|
1047d7bc5210
test limit and since arguments while retrieving DICOM resources in the REST API
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
changeset
|
2541 self.assertEqual(2, len(DoGet(_REMOTE, '/studies'))) |
|
1047d7bc5210
test limit and since arguments while retrieving DICOM resources in the REST API
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
28
diff
changeset
|
2542 self.assertEqual(4, len(DoGet(_REMOTE, '/series'))) |
|
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test limit and since arguments while retrieving DICOM resources in the REST API
Sebastien Jodogne <s.jodogne@gmail.com>
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diff
changeset
|
2543 self.assertEqual(16, len(DoGet(_REMOTE, '/instances'))) |
|
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test limit and since arguments while retrieving DICOM resources in the REST API
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diff
changeset
|
2544 |
|
1047d7bc5210
test limit and since arguments while retrieving DICOM resources in the REST API
Sebastien Jodogne <s.jodogne@gmail.com>
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diff
changeset
|
2545 self.assertRaises(Exception, lambda: DoGet(_REMOTE, '/patients&since=10' % i)) |
|
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test limit and since arguments while retrieving DICOM resources in the REST API
Sebastien Jodogne <s.jodogne@gmail.com>
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diff
changeset
|
2546 self.assertRaises(Exception, lambda: DoGet(_REMOTE, '/patients&limit=10' % i)) |
|
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test limit and since arguments while retrieving DICOM resources in the REST API
Sebastien Jodogne <s.jodogne@gmail.com>
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diff
changeset
|
2547 |
|
1047d7bc5210
test limit and since arguments while retrieving DICOM resources in the REST API
Sebastien Jodogne <s.jodogne@gmail.com>
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28
diff
changeset
|
2548 self.assertEqual(0, len(DoGet(_REMOTE, '/patients?since=0&limit=0'))) |
|
1047d7bc5210
test limit and since arguments while retrieving DICOM resources in the REST API
Sebastien Jodogne <s.jodogne@gmail.com>
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diff
changeset
|
2549 self.assertEqual(2, len(DoGet(_REMOTE, '/patients?since=0&limit=100'))) |
|
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test limit and since arguments while retrieving DICOM resources in the REST API
Sebastien Jodogne <s.jodogne@gmail.com>
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diff
changeset
|
2550 self.assertEqual(2, len(DoGet(_REMOTE, '/studies?since=0&limit=100'))) |
|
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test limit and since arguments while retrieving DICOM resources in the REST API
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diff
changeset
|
2551 self.assertEqual(4, len(DoGet(_REMOTE, '/series?since=0&limit=100'))) |
|
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test limit and since arguments while retrieving DICOM resources in the REST API
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diff
changeset
|
2552 self.assertEqual(16, len(DoGet(_REMOTE, '/instances?since=0&limit=100'))) |
|
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test limit and since arguments while retrieving DICOM resources in the REST API
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diff
changeset
|
2553 self.assertEqual(1, len(DoGet(_REMOTE, '/patients?since=1&limit=100'))) |
|
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diff
changeset
|
2554 self.assertEqual(0, len(DoGet(_REMOTE, '/patients?since=2&limit=100'))) |
|
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test limit and since arguments while retrieving DICOM resources in the REST API
Sebastien Jodogne <s.jodogne@gmail.com>
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diff
changeset
|
2555 self.assertEqual(0, len(DoGet(_REMOTE, '/patients?since=3&limit=100'))) |
|
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diff
changeset
|
2556 self.assertEqual(1, len(DoGet(_REMOTE, '/studies?since=1&limit=100'))) |
|
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test limit and since arguments while retrieving DICOM resources in the REST API
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diff
changeset
|
2557 self.assertEqual(3, len(DoGet(_REMOTE, '/series?since=1&limit=100'))) |
|
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test limit and since arguments while retrieving DICOM resources in the REST API
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diff
changeset
|
2558 self.assertEqual(2, len(DoGet(_REMOTE, '/series?since=2&limit=100'))) |
|
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diff
changeset
|
2559 self.assertEqual(1, len(DoGet(_REMOTE, '/series?since=3&limit=100'))) |
|
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test limit and since arguments while retrieving DICOM resources in the REST API
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diff
changeset
|
2560 self.assertEqual(0, len(DoGet(_REMOTE, '/series?since=4&limit=100'))) |
|
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test limit and since arguments while retrieving DICOM resources in the REST API
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diff
changeset
|
2561 self.assertEqual(0, len(DoGet(_REMOTE, '/series?since=100&limit=100'))) |
|
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test limit and since arguments while retrieving DICOM resources in the REST API
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parents:
28
diff
changeset
|
2562 self.assertEqual(15, len(DoGet(_REMOTE, '/instances?since=1&limit=100'))) |
|
1047d7bc5210
test limit and since arguments while retrieving DICOM resources in the REST API
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
28
diff
changeset
|
2563 |
|
1047d7bc5210
test limit and since arguments while retrieving DICOM resources in the REST API
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
28
diff
changeset
|
2564 for limit in [ 1, 2, 3, 7, 16, 17 ]: |
|
1047d7bc5210
test limit and since arguments while retrieving DICOM resources in the REST API
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
28
diff
changeset
|
2565 s = {} |
|
1047d7bc5210
test limit and since arguments while retrieving DICOM resources in the REST API
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
28
diff
changeset
|
2566 since = 0 |
|
1047d7bc5210
test limit and since arguments while retrieving DICOM resources in the REST API
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
28
diff
changeset
|
2567 while True: |
|
1047d7bc5210
test limit and since arguments while retrieving DICOM resources in the REST API
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
28
diff
changeset
|
2568 t = DoGet(_REMOTE, '/instances?since=%d&limit=%d' % (since, limit)) |
|
1047d7bc5210
test limit and since arguments while retrieving DICOM resources in the REST API
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
28
diff
changeset
|
2569 if len(t) == 0: |
|
1047d7bc5210
test limit and since arguments while retrieving DICOM resources in the REST API
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
28
diff
changeset
|
2570 break |
|
1047d7bc5210
test limit and since arguments while retrieving DICOM resources in the REST API
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
28
diff
changeset
|
2571 |
|
1047d7bc5210
test limit and since arguments while retrieving DICOM resources in the REST API
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
28
diff
changeset
|
2572 since += len(t) |
|
1047d7bc5210
test limit and since arguments while retrieving DICOM resources in the REST API
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
28
diff
changeset
|
2573 for i in t: |
|
1047d7bc5210
test limit and since arguments while retrieving DICOM resources in the REST API
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
28
diff
changeset
|
2574 s[i] = None |
|
1047d7bc5210
test limit and since arguments while retrieving DICOM resources in the REST API
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
28
diff
changeset
|
2575 |
|
1047d7bc5210
test limit and since arguments while retrieving DICOM resources in the REST API
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
28
diff
changeset
|
2576 self.assertEqual(16, len(s)) |
|
1047d7bc5210
test limit and since arguments while retrieving DICOM resources in the REST API
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
28
diff
changeset
|
2577 for instance in DoGet(_REMOTE, '/instances'): |
|
1047d7bc5210
test limit and since arguments while retrieving DICOM resources in the REST API
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
28
diff
changeset
|
2578 self.assertTrue(instance in s) |
| 36 | 2579 |
| 2580 | |
| 2581 def test_create_pdf(self): | |
| 2582 # Upload 4 instances | |
| 2583 brainixInstance = UploadInstance(_REMOTE, 'Brainix/Flair/IM-0001-0001.dcm')['ID'] | |
| 2584 UploadInstance(_REMOTE, 'Brainix/Epi/IM-0001-0001.dcm') | |
| 2585 UploadInstance(_REMOTE, 'Knee/T1/IM-0001-0001.dcm') | |
| 2586 UploadInstance(_REMOTE, 'Knee/T2/IM-0001-0001.dcm') | |
| 2587 | |
| 2588 brainixPatient = '16738bc3-e47ed42a-43ce044c-a3414a45-cb069bd0' | |
| 2589 brainixStudy = '27f7126f-4f66fb14-03f4081b-f9341db2-53925988' | |
| 2590 brainixEpi = '2ac1316d-3e432022-62eabff2-c59f5475-9b1ac3f8' | |
| 2591 | |
| 2592 with open(GetDatabasePath('HelloWorld.pdf'), 'rb') as f: | |
| 2593 pdf = f.read() | |
| 2594 | |
| 2595 i = DoPost(_REMOTE, '/tools/create-dicom', | |
| 2596 json.dumps({ | |
| 2597 'Tags' : { | |
| 2598 'PatientName' : 'Jodogne', | |
| 2599 'Modality' : 'CT', | |
| 2600 }, | |
| 2601 'Content' : 'data:application/pdf;base64,' + base64.b64encode(pdf) | |
| 2602 })) | |
| 2603 | |
| 2604 self.assertEqual('Jodogne', DoGet(_REMOTE, '/instances/%s/content/PatientName' % i['ID']).strip()) | |
| 2605 self.assertEqual('OT', DoGet(_REMOTE, '/instances/%s/content/Modality' % i['ID']).strip()) | |
| 2606 | |
| 2607 b = DoGet(_REMOTE, '/instances/%s/content/0042-0011' % i['ID']) | |
| 2608 self.assertEqual(len(b), len(pdf) + 1) | |
| 2609 self.assertEqual(ComputeMD5(b), ComputeMD5(pdf + '\0')) | |
| 2610 | |
| 2611 self.assertRaises(Exception, lambda: DoPost(_REMOTE, '/tools/create-dicom', | |
| 2612 json.dumps({ | |
| 2613 'Parent' : brainixPatient, | |
| 2614 'Tags' : { | |
| 2615 'PatientName' : 'Jodogne', | |
| 2616 } | |
| 2617 }))) | |
| 2618 | |
| 2619 i = DoPost(_REMOTE, '/tools/create-dicom', | |
| 2620 json.dumps({ | |
| 2621 'Parent' : brainixPatient, | |
| 2622 'Tags' : { 'StudyDescription' : 'PDF^Patient' }, | |
| 2623 'Content' : 'data:application/pdf;base64,' + base64.b64encode(pdf) | |
| 2624 })) | |
| 2625 | |
| 2626 self.assertEqual(brainixPatient, DoGet(_REMOTE, '/instances/%s/patient' % i['ID'])['ID']) | |
| 2627 | |
| 2628 i = DoPost(_REMOTE, '/tools/create-dicom', | |
| 2629 json.dumps({ | |
| 2630 'Parent' : brainixStudy, | |
| 2631 'Tags' : { 'SeriesDescription' : 'PDF^Study' }, | |
| 2632 'Content' : 'data:application/pdf;base64,' + base64.b64encode(pdf) | |
| 2633 })) | |
| 2634 | |
| 2635 self.assertEqual(brainixStudy, DoGet(_REMOTE, '/instances/%s/study' % i['ID'])['ID']) | |
| 2636 | |
| 2637 i = DoPost(_REMOTE, '/tools/create-dicom', | |
| 2638 json.dumps({ | |
| 2639 'Parent' : brainixEpi, | |
| 37 | 2640 'Tags' : { 'SpecificCharacterSet' : 'ISO_IR 13' }, |
| 36 | 2641 'Content' : 'data:application/pdf;base64,' + base64.b64encode(pdf) |
| 2642 })) | |
| 2643 | |
| 2644 self.assertEqual(brainixEpi, DoGet(_REMOTE, '/instances/%s/series' % i['ID'])['ID']) | |
| 2645 | |
| 2646 b = DoGet(_REMOTE, '/instances/%s/pdf' % i['ID']) | |
| 2647 self.assertEqual(len(b), len(pdf)) | |
| 2648 self.assertEqual(ComputeMD5(b), ComputeMD5(pdf)) | |
| 2649 | |
| 2650 self.assertRaises(Exception, lambda: DoGet(_REMOTE, '/instances/%s/pdf' % brainixInstance)) | |
| 38 | 2651 |
| 2652 | |
| 2653 def test_create_series(self): | |
| 2654 i = DoPost(_REMOTE, '/tools/create-dicom', | |
| 2655 json.dumps({ | |
| 2656 'Tags' : { | |
| 40 | 2657 'SpecificCharacterSet' : 'ISO_IR 100', |
| 2658 'PatientName' : 'Sébastien Jodogne', | |
| 38 | 2659 'Modality' : 'CT', |
| 2660 }, | |
| 2661 'Content' : [ | |
| 40 | 2662 { |
| 2663 'Content': 'data:image/png;base64,iVBORw0KGgoAAAANSUhEUgAAAAUAAAAFCAYAAACNbyblAAAAHElEQVQI12P4//8/w38GIAXDIBKE0DHxgljNBAAO9TXL0Y4OHwAAAABJRU5ErkJggg==', # red dot in RGBA | |
| 2664 'Tags' : { 'ImageComments' : 'Tutu' } | |
| 2665 }, | |
| 38 | 2666 'data:image/png;base64,iVBORw0KGgoAAAANSUhEUgAAABAAAAAQCAYAAAAf8/9hAAAAoUlEQVQ4jZ2SWw3EIBREjwUsYAELa2EtoAULFUCyXAtroRZqoRbox254BdLC/DZnZjoXWJFgCDg8egW2CBEhEnDzyRk+Ecxz2KP/0AL8S99T+jQccAVs22qKwAuPuq0uyNg9cPLh3am+pe/dkHLZtqJHj6vXJrZ7nvzvxxgemXgUwnGfXqpee09mUwp8m022OYP6bLF7mVuVe0y/umxinsAXRd9z0k1ubWsAAAAASUVORK5CYII=', |
| 2667 ] | |
| 2668 })) | |
| 2669 | |
| 2670 s = DoGet(_REMOTE, i['Path']) | |
| 2671 self.assertEqual('Series', s['Type']) | |
| 2672 self.assertEqual(s['ID'], i['ID']) | |
| 2673 self.assertEqual(2, len(s['Instances'])) | |
| 39 | 2674 self.assertEqual(2, s['ExpectedNumberOfInstances']) |
| 2675 self.assertEqual('Complete', s['Status']) | |
| 40 | 2676 |
| 2677 a = DoGet(_REMOTE, '/instances/%s/tags?simplify' % s['Instances'][0]) | |
| 2678 b = DoGet(_REMOTE, '/instances/%s/tags?simplify' % s['Instances'][1]) | |
| 2679 self.assertTrue('ImageComments' in a or 'ImageComments' in b) | |
| 2680 if 'ImageComments' in a: | |
| 2681 self.assertEqual('Tutu', a['ImageComments']) | |
| 2682 else: | |
| 2683 self.assertEqual('Tutu', b['ImageComments']) | |
| 2684 | |
| 2685 patient = DoGet(_REMOTE, '/instances/%s/patient' % s['Instances'][0]) | |
| 2686 self.assertEqual(patient['MainDicomTags']['PatientName'].encode('utf-8'), | |
| 2687 'Sébastien Jodogne') | |
| 47 | 2688 |
| 2689 | |
| 2690 def test_create_binary(self): | |
| 2691 binary = ''.join(map(chr, range(256))) | |
| 2692 encoded = 'data:application/octet-stream;base64,' + base64.b64encode(binary) | |
| 2693 tags = { | |
| 2694 'PatientName' : 'Jodogne', | |
| 2695 '8899-8899' : encoded | |
| 2696 } | |
| 2697 | |
| 2698 i = DoPost(_REMOTE, '/tools/create-dicom', | |
| 2699 json.dumps({ | |
| 266 | 2700 'Tags' : tags, |
| 2701 'PrivateCreator' : 'TestBinary', | |
| 47 | 2702 })) |
| 2703 | |
| 2704 self.assertEqual('Jodogne', DoGet(_REMOTE, '/instances/%s/content/PatientName' % i['ID']).strip()) | |
| 2705 self.assertEqual(binary, DoGet(_REMOTE, '/instances/%s/content/8899-8899' % i['ID']).strip()) | |
| 2706 | |
| 2707 i = DoPost(_REMOTE, '/tools/create-dicom', | |
| 2708 json.dumps({ | |
| 2709 'InterpretBinaryTags' : False, | |
| 266 | 2710 'Tags' : tags, |
| 2711 'PrivateCreator' : 'TestBinary', | |
| 47 | 2712 })) |
| 2713 | |
| 2714 self.assertEqual('Jodogne', DoGet(_REMOTE, '/instances/%s/content/PatientName' % i['ID']).strip()) | |
| 2715 self.assertEqual(encoded, DoGet(_REMOTE, '/instances/%s/content/8899-8899' % i['ID'])[0:-1]) | |
|
48
e4352463ff74
test_patient_ids_collision
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
47
diff
changeset
|
2716 |
|
e4352463ff74
test_patient_ids_collision
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
47
diff
changeset
|
2717 |
|
e4352463ff74
test_patient_ids_collision
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
47
diff
changeset
|
2718 def test_patient_ids_collision(self): |
|
e4352463ff74
test_patient_ids_collision
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
47
diff
changeset
|
2719 # Upload 3 instances from 3 different studies, but with the |
|
e4352463ff74
test_patient_ids_collision
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
47
diff
changeset
|
2720 # same PatientID |
|
e4352463ff74
test_patient_ids_collision
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
47
diff
changeset
|
2721 for i in range(3): |
|
e4352463ff74
test_patient_ids_collision
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
47
diff
changeset
|
2722 UploadInstance(_REMOTE, 'PatientIdsCollision/Image%d.dcm' % (i + 1)) |
|
e4352463ff74
test_patient_ids_collision
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
47
diff
changeset
|
2723 |
|
e4352463ff74
test_patient_ids_collision
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
47
diff
changeset
|
2724 a = DoPost(_REMOTE, '/tools/find', { 'Level' : 'Patient', |
|
e4352463ff74
test_patient_ids_collision
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
47
diff
changeset
|
2725 'Query' : { 'PatientName' : '*' }}) |
|
e4352463ff74
test_patient_ids_collision
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
47
diff
changeset
|
2726 self.assertEqual(1, len(a)) |
|
e4352463ff74
test_patient_ids_collision
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
47
diff
changeset
|
2727 self.assertEqual('COMMON', DoGet(_REMOTE, '/patients/%s' % a[0]) ['MainDicomTags']['PatientID']) |
|
e4352463ff74
test_patient_ids_collision
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
47
diff
changeset
|
2728 |
|
e4352463ff74
test_patient_ids_collision
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
47
diff
changeset
|
2729 a = DoPost(_REMOTE, '/tools/find', { 'Level' : 'Study', |
|
e4352463ff74
test_patient_ids_collision
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
47
diff
changeset
|
2730 'CaseSensitive' : True, |
|
e4352463ff74
test_patient_ids_collision
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
47
diff
changeset
|
2731 'Query' : { 'PatientName' : 'FOO\\HELLO' }}) |
|
e4352463ff74
test_patient_ids_collision
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
47
diff
changeset
|
2732 self.assertEqual(2, len(a)) |
|
e4352463ff74
test_patient_ids_collision
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
47
diff
changeset
|
2733 |
|
e4352463ff74
test_patient_ids_collision
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
47
diff
changeset
|
2734 a = DoPost(_REMOTE, '/tools/find', { 'Level' : 'Series', |
|
e4352463ff74
test_patient_ids_collision
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
47
diff
changeset
|
2735 'CaseSensitive' : False, |
|
e4352463ff74
test_patient_ids_collision
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
47
diff
changeset
|
2736 'Query' : { 'PatientName' : 'Foo' }}) |
|
e4352463ff74
test_patient_ids_collision
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
47
diff
changeset
|
2737 self.assertEqual(1, len(a)) |
|
e4352463ff74
test_patient_ids_collision
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
47
diff
changeset
|
2738 self.assertEqual('FOO^SERIES', DoGet(_REMOTE, '/series/%s/study' % a[0]) ['MainDicomTags']['StudyDescription']) |
|
e4352463ff74
test_patient_ids_collision
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
47
diff
changeset
|
2739 self.assertEqual('FOO', DoGet(_REMOTE, '/series/%s/study' % a[0]) ['PatientMainDicomTags']['PatientName']) |
|
e4352463ff74
test_patient_ids_collision
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
47
diff
changeset
|
2740 self.assertEqual('COMMON', DoGet(_REMOTE, '/series/%s/study' % a[0]) ['PatientMainDicomTags']['PatientID']) |
|
e4352463ff74
test_patient_ids_collision
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
47
diff
changeset
|
2741 |
|
e4352463ff74
test_patient_ids_collision
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
47
diff
changeset
|
2742 a = DoPost(_REMOTE, '/tools/find', { 'Level' : 'Study', |
|
e4352463ff74
test_patient_ids_collision
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
47
diff
changeset
|
2743 'Query' : { 'PatientName' : '*' }}) |
|
e4352463ff74
test_patient_ids_collision
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
47
diff
changeset
|
2744 self.assertEqual(3, len(a)) |
|
e4352463ff74
test_patient_ids_collision
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
47
diff
changeset
|
2745 d = map(lambda x: DoGet(_REMOTE, '/studies/%s' % x) ['MainDicomTags']['StudyDescription'], a) |
|
e4352463ff74
test_patient_ids_collision
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
47
diff
changeset
|
2746 self.assertTrue('FOO^SERIES' in d) |
|
e4352463ff74
test_patient_ids_collision
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
47
diff
changeset
|
2747 self.assertTrue('HELLO^SERIES' in d) |
|
e4352463ff74
test_patient_ids_collision
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
47
diff
changeset
|
2748 self.assertTrue('WORLD^SERIES' in d) |
|
e4352463ff74
test_patient_ids_collision
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
47
diff
changeset
|
2749 |
|
e4352463ff74
test_patient_ids_collision
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
47
diff
changeset
|
2750 d = map(lambda x: DoGet(_REMOTE, '/studies/%s' % x) ['PatientMainDicomTags']['PatientID'], a) |
|
e4352463ff74
test_patient_ids_collision
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
47
diff
changeset
|
2751 self.assertEqual(1, len(set(d))) |
|
e4352463ff74
test_patient_ids_collision
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
47
diff
changeset
|
2752 self.assertEqual('COMMON', d[0]) |
|
e4352463ff74
test_patient_ids_collision
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
47
diff
changeset
|
2753 |
|
e4352463ff74
test_patient_ids_collision
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
47
diff
changeset
|
2754 for i in a: |
|
e4352463ff74
test_patient_ids_collision
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
47
diff
changeset
|
2755 d = DoGet(_REMOTE, '/studies/%s' % i) ['MainDicomTags']['StudyDescription'] |
|
e4352463ff74
test_patient_ids_collision
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
47
diff
changeset
|
2756 p = DoGet(_REMOTE, '/studies/%s' % i) ['PatientMainDicomTags']['PatientName'] |
|
e4352463ff74
test_patient_ids_collision
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
47
diff
changeset
|
2757 self.assertEqual('%s^SERIES' % p, d) |
|
49
e7f9b8199545
test_bitbucket_issue_4
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
48
diff
changeset
|
2758 |
|
e7f9b8199545
test_bitbucket_issue_4
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
48
diff
changeset
|
2759 |
|
e7f9b8199545
test_bitbucket_issue_4
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
48
diff
changeset
|
2760 def test_bitbucket_issue_4(self): |
|
e7f9b8199545
test_bitbucket_issue_4
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
48
diff
changeset
|
2761 UploadInstance(_REMOTE, 'Brainix/Epi/IM-0001-0001.dcm') |
|
e7f9b8199545
test_bitbucket_issue_4
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
48
diff
changeset
|
2762 UploadInstance(_REMOTE, 'Brainix/Epi/IM-0001-0002.dcm') |
|
e7f9b8199545
test_bitbucket_issue_4
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
48
diff
changeset
|
2763 UploadInstance(_REMOTE, 'Brainix/Epi/IM-0001-0003.dcm') |
|
e7f9b8199545
test_bitbucket_issue_4
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
48
diff
changeset
|
2764 UploadInstance(_REMOTE, 'Formats/Jpeg.dcm') |
|
e7f9b8199545
test_bitbucket_issue_4
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
48
diff
changeset
|
2765 UploadInstance(_REMOTE, 'Formats/JpegLossless.dcm') |
|
e7f9b8199545
test_bitbucket_issue_4
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
48
diff
changeset
|
2766 UploadInstance(_REMOTE, 'Formats/Rle.dcm') |
|
e7f9b8199545
test_bitbucket_issue_4
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
48
diff
changeset
|
2767 |
|
e7f9b8199545
test_bitbucket_issue_4
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
48
diff
changeset
|
2768 self.assertEqual(0, len(DoGet(_LOCAL, '/instances'))) |
|
e7f9b8199545
test_bitbucket_issue_4
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
48
diff
changeset
|
2769 self.assertEqual(6, len(DoGet(_REMOTE, '/instances'))) |
|
e7f9b8199545
test_bitbucket_issue_4
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
48
diff
changeset
|
2770 |
|
e7f9b8199545
test_bitbucket_issue_4
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
48
diff
changeset
|
2771 p = DoGet(_REMOTE, '/patients') |
|
e7f9b8199545
test_bitbucket_issue_4
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
48
diff
changeset
|
2772 self.assertEqual(2, len(p)) |
|
e7f9b8199545
test_bitbucket_issue_4
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
48
diff
changeset
|
2773 i1 = map(lambda x: x['ID'], DoGet(_REMOTE, '/patients/%s/instances' % p[0])) |
|
e7f9b8199545
test_bitbucket_issue_4
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
48
diff
changeset
|
2774 i2 = map(lambda x: x['ID'], DoGet(_REMOTE, '/patients/%s/instances' % p[1])) |
|
e7f9b8199545
test_bitbucket_issue_4
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
48
diff
changeset
|
2775 self.assertEqual(3, len(i1)) |
|
e7f9b8199545
test_bitbucket_issue_4
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
48
diff
changeset
|
2776 self.assertEqual(3, len(i2)) |
|
e7f9b8199545
test_bitbucket_issue_4
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
48
diff
changeset
|
2777 |
|
e7f9b8199545
test_bitbucket_issue_4
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
48
diff
changeset
|
2778 j = DoPost(_REMOTE, '/modalities/orthanctest/store', i2[0:1] + i1 + i2[1:3]) |
|
e7f9b8199545
test_bitbucket_issue_4
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
48
diff
changeset
|
2779 |
|
e7f9b8199545
test_bitbucket_issue_4
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
48
diff
changeset
|
2780 self.assertEqual(6, len(DoGet(_LOCAL, '/instances'))) |
|
50
8de63d56cf11
test_create_sequence
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
49
diff
changeset
|
2781 |
|
8de63d56cf11
test_create_sequence
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
49
diff
changeset
|
2782 |
|
8de63d56cf11
test_create_sequence
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
49
diff
changeset
|
2783 def test_create_sequence(self): |
|
8de63d56cf11
test_create_sequence
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
49
diff
changeset
|
2784 i = DoPost(_REMOTE, '/tools/create-dicom', |
|
8de63d56cf11
test_create_sequence
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
49
diff
changeset
|
2785 json.dumps({ |
|
8de63d56cf11
test_create_sequence
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
49
diff
changeset
|
2786 'Tags' : { |
|
8de63d56cf11
test_create_sequence
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
49
diff
changeset
|
2787 'SpecificCharacterSet': 'ISO_IR 100', # Encode using Latin1 |
|
8de63d56cf11
test_create_sequence
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
49
diff
changeset
|
2788 'PatientName': 'Jodogne^', |
|
51
264a20a0276d
test_modify_sequence
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
50
diff
changeset
|
2789 'ReferencedStudySequence': GenerateTestSequence(), |
|
50
8de63d56cf11
test_create_sequence
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
49
diff
changeset
|
2790 } |
|
8de63d56cf11
test_create_sequence
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
49
diff
changeset
|
2791 }))['ID'] |
|
8de63d56cf11
test_create_sequence
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
49
diff
changeset
|
2792 |
|
8de63d56cf11
test_create_sequence
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
49
diff
changeset
|
2793 self.assertEqual('Jodogne^', DoGet(_REMOTE, '/instances/%s/content/PatientName' % i)) |
|
8de63d56cf11
test_create_sequence
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
49
diff
changeset
|
2794 self.assertEqual('Hello^', DoGet(_REMOTE, '/instances/%s/content/ReferencedStudySequence/0/StudyDescription' % i)) |
|
8de63d56cf11
test_create_sequence
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
49
diff
changeset
|
2795 self.assertEqual('Toto', DoGet(_REMOTE, '/instances/%s/content/ReferencedStudySequence/0/ReferencedStudySequence/0/StudyDescription' % i)) |
|
8de63d56cf11
test_create_sequence
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
49
diff
changeset
|
2796 self.assertEqual('Tata', DoGet(_REMOTE, '/instances/%s/content/ReferencedStudySequence/0/ReferencedStudySequence/1/StudyDescription' % i)) |
|
8de63d56cf11
test_create_sequence
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
49
diff
changeset
|
2797 self.assertEqual(u'Sébastien^'.encode('latin-1'), |
|
8de63d56cf11
test_create_sequence
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
49
diff
changeset
|
2798 DoGet(_REMOTE, '/instances/%s/content/ReferencedStudySequence/1/StudyDescription' % i)) |
|
51
264a20a0276d
test_modify_sequence
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
50
diff
changeset
|
2799 |
|
264a20a0276d
test_modify_sequence
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
50
diff
changeset
|
2800 |
|
264a20a0276d
test_modify_sequence
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
50
diff
changeset
|
2801 def test_modify_sequence(self): |
|
264a20a0276d
test_modify_sequence
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
50
diff
changeset
|
2802 i = UploadInstance(_REMOTE, 'PrivateTags.dcm')['ID'] |
|
264a20a0276d
test_modify_sequence
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
50
diff
changeset
|
2803 self.assertRaises(Exception, lambda: DoGet(_REMOTE, '/instances/%s/content/ReferencedStudySequence' % i)) |
|
264a20a0276d
test_modify_sequence
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
50
diff
changeset
|
2804 |
|
264a20a0276d
test_modify_sequence
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
50
diff
changeset
|
2805 j = DoPost(_REMOTE, '/instances/%s/modify' % i, |
|
264a20a0276d
test_modify_sequence
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
50
diff
changeset
|
2806 json.dumps({ |
|
264a20a0276d
test_modify_sequence
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
50
diff
changeset
|
2807 "Replace" : { |
|
264a20a0276d
test_modify_sequence
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
50
diff
changeset
|
2808 "PatientName" : "hello", |
|
264a20a0276d
test_modify_sequence
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
50
diff
changeset
|
2809 'ReferencedStudySequence': GenerateTestSequence(), |
|
264a20a0276d
test_modify_sequence
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
50
diff
changeset
|
2810 }, |
|
264a20a0276d
test_modify_sequence
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
50
diff
changeset
|
2811 }), |
|
264a20a0276d
test_modify_sequence
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
50
diff
changeset
|
2812 'application/json') |
|
264a20a0276d
test_modify_sequence
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
50
diff
changeset
|
2813 j = DoPost(_REMOTE, '/instances', j, 'application/dicom')['ID'] |
|
264a20a0276d
test_modify_sequence
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
50
diff
changeset
|
2814 DoDelete(_REMOTE, '/instances/%s' % i) |
|
264a20a0276d
test_modify_sequence
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
50
diff
changeset
|
2815 |
| 52 | 2816 self.assertEqual(2, len(DoGet(_REMOTE, '/instances/%s/content/ReferencedStudySequence' % j))) |
| 2817 | |
| 2818 | |
| 2819 def test_compression(self): | |
| 2820 i = UploadInstance(_REMOTE, 'DummyCT.dcm')['ID'] | |
| 2821 | |
| 2822 data = DoGetRaw(_REMOTE, '/instances/%s/attachments/dicom-as-json/data' % i)[1] | |
| 2823 | |
| 2824 # "StorageCompression" is enabled in the Orthanc to be tested, | |
| 2825 # uncompress the data before running the test | |
| 2826 if DoGet(_REMOTE, '/instances/%s/attachments/dicom-as-json/is-compressed' % i) != 0: | |
| 2827 DoPost(_REMOTE, '/instances/%s/attachments/dicom-as-json/uncompress' % i) | |
| 2828 | |
| 2829 cs = DoGet(_REMOTE, '/statistics')['TotalDiskSize'] | |
| 2830 us = DoGet(_REMOTE, '/statistics')['TotalUncompressedSize'] | |
| 2831 size = DoGet(_REMOTE, '/instances/%s/attachments/dicom-as-json/size' % i) | |
| 2832 md5 = DoGet(_REMOTE, '/instances/%s/attachments/dicom-as-json/md5' % i) | |
| 2833 self.assertEqual(data, DoGetRaw(_REMOTE, '/instances/%s/attachments/dicom-as-json/compressed-data' % i)[1]) | |
| 2834 self.assertEqual(md5, DoGet(_REMOTE, '/instances/%s/attachments/dicom-as-json/compressed-md5' % i)) | |
| 2835 self.assertEqual(size, DoGet(_REMOTE, '/instances/%s/attachments/dicom-as-json/compressed-size' % i)) | |
| 2836 | |
| 2837 ops = DoGet(_REMOTE, '/instances/%s/attachments/dicom-as-json' % i) | |
| 2838 self.assertTrue('compress' in ops) | |
| 2839 self.assertTrue('uncompress' in ops) | |
| 2840 self.assertTrue('is-compressed' in ops) | |
| 2841 self.assertEqual(0, DoGet(_REMOTE, '/instances/%s/attachments/dicom-as-json/is-compressed' % i)) | |
| 2842 DoPost(_REMOTE, '/instances/%s/attachments/dicom-as-json/verify-md5' % i) | |
| 2843 | |
| 2844 DoPost(_REMOTE, '/instances/%s/attachments/dicom-as-json/compress' % i) | |
| 2845 DoPost(_REMOTE, '/instances/%s/attachments/dicom-as-json/verify-md5' % i) | |
| 2846 self.assertEqual(1, DoGet(_REMOTE, '/instances/%s/attachments/dicom-as-json/is-compressed' % i)) | |
| 2847 self.assertLess(cs, DoGet(_REMOTE, '/statistics')['TotalDiskSize']) | |
| 2848 self.assertEqual(us, DoGet(_REMOTE, '/statistics')['TotalUncompressedSize']) | |
| 2849 self.assertGreater(len(data), len(DoGetRaw(_REMOTE, '/instances/%s/attachments/dicom-as-json/compressed-data' % i)[1])) | |
| 2850 self.assertGreater(size, DoGet(_REMOTE, '/instances/%s/attachments/dicom-as-json/compressed-size' % i)) | |
| 2851 self.assertEqual(size, DoGet(_REMOTE, '/instances/%s/attachments/dicom-as-json/size' % i)) | |
| 2852 self.assertEqual(md5, DoGet(_REMOTE, '/instances/%s/attachments/dicom-as-json/md5' % i)) | |
| 2853 self.assertNotEqual(md5, DoGet(_REMOTE, '/instances/%s/attachments/dicom-as-json/compressed-md5' % i)) | |
| 2854 | |
| 2855 DoPost(_REMOTE, '/instances/%s/attachments/dicom-as-json/uncompress' % i) | |
| 2856 DoPost(_REMOTE, '/instances/%s/attachments/dicom-as-json/verify-md5' % i) | |
| 2857 self.assertEqual(0, DoGet(_REMOTE, '/instances/%s/attachments/dicom-as-json/is-compressed' % i)) | |
| 2858 self.assertEqual(data, DoGetRaw(_REMOTE, '/instances/%s/attachments/dicom-as-json/compressed-data' % i)[1]) | |
| 2859 self.assertEqual(size, DoGet(_REMOTE, '/instances/%s/attachments/dicom-as-json/compressed-size' % i)) | |
| 2860 self.assertEqual(size, DoGet(_REMOTE, '/instances/%s/attachments/dicom-as-json/size' % i)) | |
| 2861 self.assertEqual(md5, DoGet(_REMOTE, '/instances/%s/attachments/dicom-as-json/md5' % i)) | |
| 2862 self.assertEqual(md5, DoGet(_REMOTE, '/instances/%s/attachments/dicom-as-json/compressed-md5' % i)) | |
| 2863 self.assertEqual(cs, DoGet(_REMOTE, '/statistics')['TotalDiskSize']) | |
| 2864 self.assertEqual(us, DoGet(_REMOTE, '/statistics')['TotalUncompressedSize']) | |
| 53 | 2865 |
| 2866 | |
| 2867 def test_ordered_slices(self): | |
| 2868 i = UploadInstance(_REMOTE, 'Multiframe.dcm')['ID'] | |
| 2869 s = DoGet(_REMOTE, '/instances/%s' % i)['ParentSeries'] | |
| 2870 o = DoGet(_REMOTE, '/series/%s/ordered-slices' % s) | |
| 2871 self.assertEqual('Sequence', o['Type']) | |
| 2872 self.assertEqual(1, len(o['Dicom'])) | |
| 2873 self.assertEqual('/instances/9e05eb0a-18b6268c-e0d36085-8ddab517-3b5aec02/file', o['Dicom'][0]) | |
| 2874 self.assertEqual(76, len(o['Slices'])) | |
| 2875 for j in range(76): | |
| 2876 self.assertEqual('/instances/9e05eb0a-18b6268c-e0d36085-8ddab517-3b5aec02/frames/%d' % j, o['Slices'][j]) | |
| 2877 | |
| 68 | 2878 self.assertEqual(1, len(o['SlicesShort'])) |
| 2879 self.assertEqual('9e05eb0a-18b6268c-e0d36085-8ddab517-3b5aec02', o['SlicesShort'][0][0]) | |
| 2880 self.assertEqual(0, o['SlicesShort'][0][1]) | |
| 2881 self.assertEqual(76, o['SlicesShort'][0][2]) | |
| 2882 | |
| 53 | 2883 i = UploadInstance(_REMOTE, 'Brainix/Epi/IM-0001-0001.dcm')['ID'] |
| 2884 j = UploadInstance(_REMOTE, 'Brainix/Epi/IM-0001-0002.dcm')['ID'] | |
| 2885 k = UploadInstance(_REMOTE, 'Brainix/Epi/IM-0001-0003.dcm')['ID'] | |
| 2886 s = DoGet(_REMOTE, '/instances/%s' % i)['ParentSeries'] | |
| 2887 o = DoGet(_REMOTE, '/series/%s/ordered-slices' % s) | |
| 2888 | |
| 2889 self.assertEqual('Volume', o['Type']) | |
| 2890 self.assertEqual(3, len(o['Dicom'])) | |
| 2891 self.assertEqual(3, len(o['Slices'])) | |
| 2892 self.assertEqual('/instances/%s/file' % i, o['Dicom'][2]) | |
| 2893 self.assertEqual('/instances/%s/file' % j, o['Dicom'][1]) | |
| 2894 self.assertEqual('/instances/%s/file' % k, o['Dicom'][0]) | |
| 2895 self.assertEqual('/instances/%s/frames/0' % i, o['Slices'][2]) | |
| 2896 self.assertEqual('/instances/%s/frames/0' % j, o['Slices'][1]) | |
| 2897 self.assertEqual('/instances/%s/frames/0' % k, o['Slices'][0]) | |
| 2898 | |
| 68 | 2899 self.assertEqual(3, len(o['SlicesShort'])) |
| 2900 self.assertEqual(k, o['SlicesShort'][0][0]) | |
| 2901 self.assertEqual(0, o['SlicesShort'][0][1]) | |
| 2902 self.assertEqual(1, o['SlicesShort'][0][2]) | |
| 2903 self.assertEqual(j, o['SlicesShort'][1][0]) | |
| 2904 self.assertEqual(0, o['SlicesShort'][1][1]) | |
| 2905 self.assertEqual(1, o['SlicesShort'][1][2]) | |
| 2906 self.assertEqual(i, o['SlicesShort'][2][0]) | |
| 2907 self.assertEqual(0, o['SlicesShort'][2][1]) | |
| 2908 self.assertEqual(1, o['SlicesShort'][2][2]) | |
| 2909 | |
| 53 | 2910 i = UploadInstance(_REMOTE, 'Beaufix/IM-0001-0001.dcm')['ID'] |
| 2911 j = UploadInstance(_REMOTE, 'Beaufix/IM-0001-0002.dcm')['ID'] | |
| 2912 s = DoGet(_REMOTE, '/instances/%s' % i)['ParentSeries'] | |
| 2913 o = DoGet(_REMOTE, '/series/%s/ordered-slices' % s) | |
| 2914 | |
| 2915 self.assertEqual('Sequence', o['Type']) | |
| 2916 self.assertEqual(2, len(o['Dicom'])) | |
| 2917 self.assertEqual(2, len(o['Slices'])) | |
| 2918 self.assertEqual('/instances/%s/file' % i, o['Dicom'][0]) | |
| 2919 self.assertEqual('/instances/%s/file' % j, o['Dicom'][1]) | |
| 2920 self.assertEqual('/instances/%s/frames/0' % i, o['Slices'][0]) | |
| 2921 self.assertEqual('/instances/%s/frames/0' % j, o['Slices'][1]) | |
|
54
c5f8a6b0d85e
test_incoming_movescu_accession
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
53
diff
changeset
|
2922 |
| 68 | 2923 self.assertEqual(2, len(o['SlicesShort'])) |
| 2924 self.assertEqual(i, o['SlicesShort'][0][0]) | |
| 2925 self.assertEqual(0, o['SlicesShort'][0][1]) | |
| 2926 self.assertEqual(1, o['SlicesShort'][0][2]) | |
| 2927 self.assertEqual(j, o['SlicesShort'][1][0]) | |
| 2928 self.assertEqual(0, o['SlicesShort'][1][1]) | |
| 2929 self.assertEqual(1, o['SlicesShort'][1][2]) | |
| 2930 | |
| 2931 | |
|
54
c5f8a6b0d85e
test_incoming_movescu_accession
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
53
diff
changeset
|
2932 |
|
c5f8a6b0d85e
test_incoming_movescu_accession
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
53
diff
changeset
|
2933 def test_incoming_movescu_accession(self): |
|
c5f8a6b0d85e
test_incoming_movescu_accession
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
53
diff
changeset
|
2934 UploadInstance(_REMOTE, 'Knee/T1/IM-0001-0001.dcm') |
|
c5f8a6b0d85e
test_incoming_movescu_accession
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
53
diff
changeset
|
2935 |
|
137
412d5f70447e
testing asynchronous c-move
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
136
diff
changeset
|
2936 # No matching patient, so no job is created |
|
54
c5f8a6b0d85e
test_incoming_movescu_accession
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
53
diff
changeset
|
2937 self.assertEqual(0, len(DoGet(_LOCAL, '/patients'))) |
|
c5f8a6b0d85e
test_incoming_movescu_accession
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
53
diff
changeset
|
2938 CallMoveScu([ '--study', '-k', '0008,0052=STUDY', '-k', 'AccessionNumber=nope' ]) |
|
c5f8a6b0d85e
test_incoming_movescu_accession
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
53
diff
changeset
|
2939 self.assertEqual(0, len(DoGet(_LOCAL, '/patients'))) |
|
c5f8a6b0d85e
test_incoming_movescu_accession
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
53
diff
changeset
|
2940 CallMoveScu([ '--study', '-k', '0008,0052=PATIENT', '-k', 'AccessionNumber=A10003245599' ]) |
|
c5f8a6b0d85e
test_incoming_movescu_accession
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
53
diff
changeset
|
2941 self.assertEqual(0, len(DoGet(_LOCAL, '/patients'))) |
|
137
412d5f70447e
testing asynchronous c-move
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
136
diff
changeset
|
2942 |
|
412d5f70447e
testing asynchronous c-move
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
136
diff
changeset
|
2943 # 1 Matching patient, track the job |
| 138 | 2944 self.assertTrue(MonitorJob(_REMOTE, lambda: CallMoveScu([ |
| 2945 '--study', | |
| 2946 '-k', '0008,0052=STUDY', | |
| 2947 '-k', 'AccessionNumber=A10003245599' | |
| 2948 ]))) | |
|
137
412d5f70447e
testing asynchronous c-move
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
136
diff
changeset
|
2949 |
|
54
c5f8a6b0d85e
test_incoming_movescu_accession
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
53
diff
changeset
|
2950 self.assertEqual(1, len(DoGet(_LOCAL, '/patients'))) |
|
c5f8a6b0d85e
test_incoming_movescu_accession
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
53
diff
changeset
|
2951 |
| 55 | 2952 |
| 2953 def test_dicom_to_json(self): | |
| 2954 i = UploadInstance(_REMOTE, 'PrivateMDNTags.dcm')['ID'] | |
|
60
cd3c7f70f139
test backward compatibility with Orthanc 0.9.4
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
59
diff
changeset
|
2955 j = UploadInstance(_REMOTE, 'PrivateTags.dcm')['ID'] |
|
cd3c7f70f139
test backward compatibility with Orthanc 0.9.4
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
59
diff
changeset
|
2956 |
|
cd3c7f70f139
test backward compatibility with Orthanc 0.9.4
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
59
diff
changeset
|
2957 t = DoGet(_REMOTE, '/instances/%s/tags?simplify' % i) |
|
cd3c7f70f139
test backward compatibility with Orthanc 0.9.4
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
59
diff
changeset
|
2958 with open(GetDatabasePath('PrivateMDNTagsSimplify.json'), 'r') as f: |
|
80
8466dbfcb22b
fix test against dcmtk 3.6.1
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
79
diff
changeset
|
2959 self.assertTrue(CompareTags(t, json.loads(f.read()), [ |
| 123 | 2960 # Tags for compatibility with DCMTK 3.6.0 |
| 2961 'RETIRED_OtherPatientIDs', | |
| 2962 'OtherPatientIDs', | |
| 2963 'ACR_NEMA_2C_VariablePixelDataGroupLength', | |
|
80
8466dbfcb22b
fix test against dcmtk 3.6.1
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
79
diff
changeset
|
2964 ])) |
| 55 | 2965 |
| 2966 t = DoGet(_REMOTE, '/instances/%s/tags' % i) | |
| 2967 with open(GetDatabasePath('PrivateMDNTagsFull.json'), 'r') as f: | |
|
87
4b24faec842b
test_reconstruct_json2 + test_private_tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
86
diff
changeset
|
2968 self.assertTrue(CompareTags(t, json.loads(f.read()), [ |
|
4b24faec842b
test_reconstruct_json2 + test_private_tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
86
diff
changeset
|
2969 ])) |
| 55 | 2970 |
|
60
cd3c7f70f139
test backward compatibility with Orthanc 0.9.4
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
59
diff
changeset
|
2971 t = DoGet(_REMOTE, '/instances/%s/tags?simplify' % j) |
|
cd3c7f70f139
test backward compatibility with Orthanc 0.9.4
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
59
diff
changeset
|
2972 with open(GetDatabasePath('PrivateTagsSimplify.json'), 'r') as f: |
|
80
8466dbfcb22b
fix test against dcmtk 3.6.1
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
79
diff
changeset
|
2973 self.assertTrue(CompareTags(t, json.loads(f.read()), [ |
|
8466dbfcb22b
fix test against dcmtk 3.6.1
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
79
diff
changeset
|
2974 ])) |
|
60
cd3c7f70f139
test backward compatibility with Orthanc 0.9.4
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
59
diff
changeset
|
2975 |
|
372
e9b03d8f3b78
fix for DCMTK 3.6.6
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
369
diff
changeset
|
2976 |
|
e9b03d8f3b78
fix for DCMTK 3.6.6
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
369
diff
changeset
|
2977 # NB: To get the actual value of the "tags" JSON file, use the |
|
e9b03d8f3b78
fix for DCMTK 3.6.6
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
369
diff
changeset
|
2978 # following command: |
|
e9b03d8f3b78
fix for DCMTK 3.6.6
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
369
diff
changeset
|
2979 # $ curl http://alice:orthanctest@localhost:8042/instances/d29ead49-43e8601d-72f1e922-7de676ee-ea77c2b4/tags |
|
60
cd3c7f70f139
test backward compatibility with Orthanc 0.9.4
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
59
diff
changeset
|
2980 t = DoGet(_REMOTE, '/instances/%s/tags' % j) |
|
cd3c7f70f139
test backward compatibility with Orthanc 0.9.4
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
59
diff
changeset
|
2981 with open(GetDatabasePath('PrivateTagsFull.json'), 'r') as f: |
|
cd3c7f70f139
test backward compatibility with Orthanc 0.9.4
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
59
diff
changeset
|
2982 a = json.loads(f.read()) |
|
65
09fc27e0899a
patch for testing windows builds
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
64
diff
changeset
|
2983 aa = json.dumps(a).replace('2e+022', '2e+22') |
|
372
e9b03d8f3b78
fix for DCMTK 3.6.6
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
369
diff
changeset
|
2984 tt = (json.dumps(t) |
|
e9b03d8f3b78
fix for DCMTK 3.6.6
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
369
diff
changeset
|
2985 .replace('2e+022', '2e+22') |
|
e9b03d8f3b78
fix for DCMTK 3.6.6
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
369
diff
changeset
|
2986 # The "IllegalPrivatePixelSequence" tag was introduced in DCMTK 3.6.6 dictionary |
|
e9b03d8f3b78
fix for DCMTK 3.6.6
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
369
diff
changeset
|
2987 .replace('IllegalPrivatePixelSequence', 'Unknown Tag & Data')) |
|
65
09fc27e0899a
patch for testing windows builds
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
64
diff
changeset
|
2988 self.assertEqual(aa, tt) |
| 57 | 2989 |
| 2990 | |
| 2991 def test_batch_archive(self): | |
| 2992 UploadInstance(_REMOTE, 'Knee/T1/IM-0001-0001.dcm') | |
| 2993 UploadInstance(_REMOTE, 'Knee/T1/IM-0001-0002.dcm') | |
| 2994 UploadInstance(_REMOTE, 'Knee/T2/IM-0001-0001.dcm') | |
| 2995 UploadInstance(_REMOTE, 'Knee/T2/IM-0001-0002.dcm') | |
| 2996 UploadInstance(_REMOTE, 'Brainix/Epi/IM-0001-0001.dcm') | |
| 2997 UploadInstance(_REMOTE, 'Brainix/Epi/IM-0001-0002.dcm') | |
| 2998 UploadInstance(_REMOTE, 'Brainix/Flair/IM-0001-0001.dcm') | |
| 2999 UploadInstance(_REMOTE, 'Brainix/Flair/IM-0001-0002.dcm') | |
| 3000 | |
| 3001 s = DoPost(_REMOTE, '/tools/create-archive', [ ]) | |
| 3002 z = zipfile.ZipFile(StringIO(s), "r") | |
| 3003 self.assertEqual(0, len(z.namelist())) | |
| 3004 | |
| 3005 # One patient | |
| 3006 s = DoPost(_REMOTE, '/tools/create-archive', [ 'ca29faea-b6a0e17f-067743a1-8b778011-a48b2a17' ]) | |
| 3007 z = zipfile.ZipFile(StringIO(s), "r") | |
| 3008 self.assertEqual(4, len(z.namelist())) | |
| 3009 | |
| 3010 # One patient + twice its study + one series from other patient | |
| 3011 s = DoPost(_REMOTE, '/tools/create-archive', [ | |
| 3012 'ca29faea-b6a0e17f-067743a1-8b778011-a48b2a17', | |
| 3013 '0a9b3153-2512774b-2d9580de-1fc3dcf6-3bd83918', | |
| 3014 '1e2c125c-411b8e86-3f4fe68e-a7584dd3-c6da78f0' | |
| 3015 ]) | |
| 3016 z = zipfile.ZipFile(StringIO(s), "r") | |
| 3017 self.assertEqual(6, len(z.namelist())) | |
| 3018 | |
| 3019 # One patient + one series + one instance | |
| 3020 s = DoPost(_REMOTE, '/tools/create-archive', [ | |
| 3021 'ca29faea-b6a0e17f-067743a1-8b778011-a48b2a17', | |
| 3022 '1e2c125c-411b8e86-3f4fe68e-a7584dd3-c6da78f0', | |
| 3023 '1d429ccb-bdcc78a1-7d129d6a-ba4966ed-fe4dbd87' | |
| 3024 ]) | |
| 3025 z = zipfile.ZipFile(StringIO(s), "r") | |
| 3026 self.assertEqual(7, len(z.namelist())) | |
|
59
84378ada15ab
test_decode_brainix_as_jpeg
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
58
diff
changeset
|
3027 |
|
84378ada15ab
test_decode_brainix_as_jpeg
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
58
diff
changeset
|
3028 |
|
84378ada15ab
test_decode_brainix_as_jpeg
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
58
diff
changeset
|
3029 def test_decode_brainix_as_jpeg(self): |
|
84378ada15ab
test_decode_brainix_as_jpeg
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
58
diff
changeset
|
3030 i = UploadInstance(_REMOTE, 'Brainix/Epi/IM-0001-0001.dcm')['ID'] |
|
84378ada15ab
test_decode_brainix_as_jpeg
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
58
diff
changeset
|
3031 |
|
84378ada15ab
test_decode_brainix_as_jpeg
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
58
diff
changeset
|
3032 j = GetImage(_REMOTE, '/instances/%s/preview' % i) |
|
84378ada15ab
test_decode_brainix_as_jpeg
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
58
diff
changeset
|
3033 self.assertEqual('PNG', j.format) |
|
84378ada15ab
test_decode_brainix_as_jpeg
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
58
diff
changeset
|
3034 self.assertEqual(j.size[0], 256) |
|
84378ada15ab
test_decode_brainix_as_jpeg
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
58
diff
changeset
|
3035 self.assertEqual(j.size[1], 256) |
|
84378ada15ab
test_decode_brainix_as_jpeg
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
58
diff
changeset
|
3036 |
|
84378ada15ab
test_decode_brainix_as_jpeg
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
58
diff
changeset
|
3037 j = GetImage(_REMOTE, '/instances/%s/preview' % i, headers = { 'Accept' : '*/*' }) |
|
84378ada15ab
test_decode_brainix_as_jpeg
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
58
diff
changeset
|
3038 self.assertEqual('PNG', j.format) |
|
84378ada15ab
test_decode_brainix_as_jpeg
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
58
diff
changeset
|
3039 |
|
84378ada15ab
test_decode_brainix_as_jpeg
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
58
diff
changeset
|
3040 j = GetImage(_REMOTE, '/instances/%s/preview' % i, headers = { 'Accept' : 'image/*' }) |
|
84378ada15ab
test_decode_brainix_as_jpeg
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
58
diff
changeset
|
3041 self.assertEqual('PNG', j.format) |
|
84378ada15ab
test_decode_brainix_as_jpeg
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
58
diff
changeset
|
3042 |
|
84378ada15ab
test_decode_brainix_as_jpeg
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
58
diff
changeset
|
3043 j = GetImage(_REMOTE, '/instances/%s/preview' % i, headers = { 'Accept' : 'image/png' }) |
|
84378ada15ab
test_decode_brainix_as_jpeg
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
58
diff
changeset
|
3044 self.assertEqual('PNG', j.format) |
|
84378ada15ab
test_decode_brainix_as_jpeg
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
58
diff
changeset
|
3045 |
|
84378ada15ab
test_decode_brainix_as_jpeg
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
58
diff
changeset
|
3046 j = GetImage(_REMOTE, '/instances/%s/preview' % i, headers = { 'Accept' : 'image/jpeg' }) |
|
84378ada15ab
test_decode_brainix_as_jpeg
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
58
diff
changeset
|
3047 self.assertEqual('JPEG', j.format) |
|
84378ada15ab
test_decode_brainix_as_jpeg
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
58
diff
changeset
|
3048 self.assertEqual(j.size[0], 256) |
|
84378ada15ab
test_decode_brainix_as_jpeg
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
58
diff
changeset
|
3049 self.assertEqual(j.size[1], 256) |
|
84378ada15ab
test_decode_brainix_as_jpeg
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
58
diff
changeset
|
3050 |
|
84378ada15ab
test_decode_brainix_as_jpeg
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
58
diff
changeset
|
3051 a = len(DoGet(_REMOTE, '/instances/%s/preview?quality=50' % i, headers = { 'Accept' : 'image/jpeg' })) |
|
84378ada15ab
test_decode_brainix_as_jpeg
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
58
diff
changeset
|
3052 b = len(DoGet(_REMOTE, '/instances/%s/preview' % i, headers = { 'Accept' : 'image/jpeg' })) |
|
84378ada15ab
test_decode_brainix_as_jpeg
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
58
diff
changeset
|
3053 self.assertLess(a, b) |
|
84378ada15ab
test_decode_brainix_as_jpeg
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
58
diff
changeset
|
3054 |
|
84378ada15ab
test_decode_brainix_as_jpeg
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
58
diff
changeset
|
3055 j = GetImage(_REMOTE, '/instances/%s/image-uint8' % i, headers = { 'Accept' : 'image/jpeg' }) |
|
84378ada15ab
test_decode_brainix_as_jpeg
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
58
diff
changeset
|
3056 self.assertEqual('JPEG', j.format) |
|
84378ada15ab
test_decode_brainix_as_jpeg
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
58
diff
changeset
|
3057 |
|
84378ada15ab
test_decode_brainix_as_jpeg
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
58
diff
changeset
|
3058 # 16bit encoding is not supported with JPEG |
|
84378ada15ab
test_decode_brainix_as_jpeg
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
58
diff
changeset
|
3059 self.assertRaises(Exception, lambda: GetImage(_REMOTE, '/instances/%s/image-uint16' % i, headers = { 'Accept' : 'image/jpeg' })) |
|
84378ada15ab
test_decode_brainix_as_jpeg
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
58
diff
changeset
|
3060 self.assertRaises(Exception, lambda: GetImage(_REMOTE, '/instances/%s/image-int16' % i, headers = { 'Accept' : 'image/jpeg' })) |
|
84378ada15ab
test_decode_brainix_as_jpeg
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
58
diff
changeset
|
3061 |
|
84378ada15ab
test_decode_brainix_as_jpeg
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
58
diff
changeset
|
3062 # No matching content type |
|
84378ada15ab
test_decode_brainix_as_jpeg
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
58
diff
changeset
|
3063 self.assertRaises(Exception, lambda: GetImage(_REMOTE, '/instances/%s/preview' % i, headers = { 'Accept' : 'application/pdf' })) |
|
69
83fd88230097
test_media_encodings
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
68
diff
changeset
|
3064 |
|
83fd88230097
test_media_encodings
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
68
diff
changeset
|
3065 |
|
83fd88230097
test_media_encodings
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
68
diff
changeset
|
3066 |
|
83fd88230097
test_media_encodings
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
68
diff
changeset
|
3067 def test_media_encodings(self): |
|
83fd88230097
test_media_encodings
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
68
diff
changeset
|
3068 ascii = UploadInstance(_REMOTE, 'Knee/T1/IM-0001-0001.dcm')['ID'] |
|
83fd88230097
test_media_encodings
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
68
diff
changeset
|
3069 latin1 = UploadInstance(_REMOTE, 'Brainix/Epi/IM-0001-0001.dcm')['ID'] |
|
83fd88230097
test_media_encodings
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
68
diff
changeset
|
3070 latin2 = UploadInstance(_REMOTE, 'MarekLatin2.dcm')['ID'] |
|
83fd88230097
test_media_encodings
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
68
diff
changeset
|
3071 |
|
83fd88230097
test_media_encodings
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
68
diff
changeset
|
3072 tmp = DoPost(_REMOTE, '/tools/create-media', [ascii,latin1,latin2]) |
|
83fd88230097
test_media_encodings
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
68
diff
changeset
|
3073 z = zipfile.ZipFile(StringIO(tmp), "r") |
|
83fd88230097
test_media_encodings
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
68
diff
changeset
|
3074 |
|
83fd88230097
test_media_encodings
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
68
diff
changeset
|
3075 self.assertEqual(4, len(z.namelist())) |
|
83fd88230097
test_media_encodings
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
68
diff
changeset
|
3076 self.assertTrue('IMAGES/IM0' in z.namelist()) |
|
83fd88230097
test_media_encodings
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
68
diff
changeset
|
3077 self.assertTrue('IMAGES/IM1' in z.namelist()) |
|
83fd88230097
test_media_encodings
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
68
diff
changeset
|
3078 self.assertTrue('IMAGES/IM2' in z.namelist()) |
|
83fd88230097
test_media_encodings
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
68
diff
changeset
|
3079 self.assertTrue('DICOMDIR' in z.namelist()) |
|
83fd88230097
test_media_encodings
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
68
diff
changeset
|
3080 |
|
83fd88230097
test_media_encodings
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
68
diff
changeset
|
3081 try: |
|
83fd88230097
test_media_encodings
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
68
diff
changeset
|
3082 os.remove('/tmp/DICOMDIR') |
|
83fd88230097
test_media_encodings
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
68
diff
changeset
|
3083 except: |
|
83fd88230097
test_media_encodings
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
68
diff
changeset
|
3084 # The file does not exist |
|
83fd88230097
test_media_encodings
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
68
diff
changeset
|
3085 pass |
|
83fd88230097
test_media_encodings
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
68
diff
changeset
|
3086 |
|
83fd88230097
test_media_encodings
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
68
diff
changeset
|
3087 z.extract('DICOMDIR', '/tmp') |
|
83fd88230097
test_media_encodings
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
68
diff
changeset
|
3088 a = subprocess.check_output([ FindExecutable('dciodvfy'), '/tmp/DICOMDIR' ], |
|
83fd88230097
test_media_encodings
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
68
diff
changeset
|
3089 stderr = subprocess.STDOUT).split('\n') |
|
83fd88230097
test_media_encodings
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
68
diff
changeset
|
3090 |
|
83fd88230097
test_media_encodings
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
68
diff
changeset
|
3091 a = subprocess.check_output([ FindExecutable('dcentvfy'), '/tmp/DICOMDIR' ], |
|
83fd88230097
test_media_encodings
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
68
diff
changeset
|
3092 stderr = subprocess.STDOUT).split('\n') |
|
83fd88230097
test_media_encodings
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
68
diff
changeset
|
3093 self.assertEqual(1, len(a)) |
|
83fd88230097
test_media_encodings
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
68
diff
changeset
|
3094 self.assertEqual('', a[0]) |
|
83fd88230097
test_media_encodings
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
68
diff
changeset
|
3095 |
|
83fd88230097
test_media_encodings
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
68
diff
changeset
|
3096 a = subprocess.check_output([ FindExecutable('dcm2xml'), '/tmp/DICOMDIR' ]) |
|
83fd88230097
test_media_encodings
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
68
diff
changeset
|
3097 self.assertTrue(re.search('1.3.46.670589.11.17521.5.0.3124.2008081908590448738', a) != None) |
|
83fd88230097
test_media_encodings
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
68
diff
changeset
|
3098 self.assertTrue(re.search('1.3.46.670589.11.0.0.11.4.2.0.8743.5.5396.2006120114333648576', a) != None) |
|
83fd88230097
test_media_encodings
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
68
diff
changeset
|
3099 self.assertTrue(re.search('1.2.826.0.1.3680043.2.1569.1.4.323026757.1700.1399452091.57', a) != None) |
|
83fd88230097
test_media_encodings
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
68
diff
changeset
|
3100 |
|
83fd88230097
test_media_encodings
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
68
diff
changeset
|
3101 os.remove('/tmp/DICOMDIR') |
|
71
48740070cbf1
TDD: tests for ongoing development of counter tags in C-Find
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
70
diff
changeset
|
3102 |
|
48740070cbf1
TDD: tests for ongoing development of counter tags in C-Find
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
70
diff
changeset
|
3103 |
|
48740070cbf1
TDD: tests for ongoing development of counter tags in C-Find
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
70
diff
changeset
|
3104 def test_findscu_counters(self): |
|
48740070cbf1
TDD: tests for ongoing development of counter tags in C-Find
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
70
diff
changeset
|
3105 UploadInstance(_REMOTE, 'Comunix/Ct/IM-0001-0001.dcm') |
|
48740070cbf1
TDD: tests for ongoing development of counter tags in C-Find
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
70
diff
changeset
|
3106 UploadInstance(_REMOTE, 'Comunix/Pet/IM-0001-0001.dcm') |
|
48740070cbf1
TDD: tests for ongoing development of counter tags in C-Find
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
70
diff
changeset
|
3107 UploadInstance(_REMOTE, 'Comunix/Pet/IM-0001-0002.dcm') |
|
48740070cbf1
TDD: tests for ongoing development of counter tags in C-Find
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
70
diff
changeset
|
3108 |
|
48740070cbf1
TDD: tests for ongoing development of counter tags in C-Find
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
70
diff
changeset
|
3109 i = CallFindScu([ '-k', '0008,0052=PATIENT', '-k', 'NumberOfPatientRelatedStudies' ]) |
|
48740070cbf1
TDD: tests for ongoing development of counter tags in C-Find
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
70
diff
changeset
|
3110 s = re.findall('\(0020,1200\).*?\[(.*?)\]', i) |
|
48740070cbf1
TDD: tests for ongoing development of counter tags in C-Find
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
70
diff
changeset
|
3111 self.assertEqual(1, len(s)) |
|
48740070cbf1
TDD: tests for ongoing development of counter tags in C-Find
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
70
diff
changeset
|
3112 self.assertTrue('1 ' in s) |
|
48740070cbf1
TDD: tests for ongoing development of counter tags in C-Find
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
70
diff
changeset
|
3113 |
|
48740070cbf1
TDD: tests for ongoing development of counter tags in C-Find
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
70
diff
changeset
|
3114 i = CallFindScu([ '-k', '0008,0052=PATIENT', '-k', 'NumberOfPatientRelatedSeries' ]) |
|
48740070cbf1
TDD: tests for ongoing development of counter tags in C-Find
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
70
diff
changeset
|
3115 s = re.findall('\(0020,1202\).*?\[(.*?)\]', i) |
|
48740070cbf1
TDD: tests for ongoing development of counter tags in C-Find
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
70
diff
changeset
|
3116 self.assertEqual(1, len(s)) |
|
48740070cbf1
TDD: tests for ongoing development of counter tags in C-Find
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
70
diff
changeset
|
3117 self.assertTrue('2 ' in s) |
|
48740070cbf1
TDD: tests for ongoing development of counter tags in C-Find
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
70
diff
changeset
|
3118 |
|
48740070cbf1
TDD: tests for ongoing development of counter tags in C-Find
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
70
diff
changeset
|
3119 i = CallFindScu([ '-k', '0008,0052=PATIENT', '-k', 'NumberOfPatientRelatedInstances' ]) |
|
48740070cbf1
TDD: tests for ongoing development of counter tags in C-Find
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
70
diff
changeset
|
3120 s = re.findall('\(0020,1204\).*?\[(.*?)\]', i) |
|
48740070cbf1
TDD: tests for ongoing development of counter tags in C-Find
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
70
diff
changeset
|
3121 self.assertEqual(1, len(s)) |
|
48740070cbf1
TDD: tests for ongoing development of counter tags in C-Find
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
70
diff
changeset
|
3122 self.assertTrue('3 ' in s) |
|
48740070cbf1
TDD: tests for ongoing development of counter tags in C-Find
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
70
diff
changeset
|
3123 |
|
48740070cbf1
TDD: tests for ongoing development of counter tags in C-Find
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
70
diff
changeset
|
3124 i = CallFindScu([ '-k', '0008,0052=STUDY', '-k', 'NumberOfStudyRelatedSeries' ]) |
|
48740070cbf1
TDD: tests for ongoing development of counter tags in C-Find
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
70
diff
changeset
|
3125 s = re.findall('\(0020,1206\).*?\[(.*?)\]', i) |
|
48740070cbf1
TDD: tests for ongoing development of counter tags in C-Find
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
70
diff
changeset
|
3126 self.assertEqual(1, len(s)) |
|
48740070cbf1
TDD: tests for ongoing development of counter tags in C-Find
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
70
diff
changeset
|
3127 self.assertTrue('2 ' in s) |
|
48740070cbf1
TDD: tests for ongoing development of counter tags in C-Find
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
70
diff
changeset
|
3128 |
|
48740070cbf1
TDD: tests for ongoing development of counter tags in C-Find
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
70
diff
changeset
|
3129 i = CallFindScu([ '-k', '0008,0052=STUDY', '-k', 'NumberOfStudyRelatedInstances' ]) |
|
48740070cbf1
TDD: tests for ongoing development of counter tags in C-Find
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
70
diff
changeset
|
3130 s = re.findall('\(0020,1208\).*?\[(.*?)\]', i) |
|
48740070cbf1
TDD: tests for ongoing development of counter tags in C-Find
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
70
diff
changeset
|
3131 self.assertEqual(1, len(s)) |
|
48740070cbf1
TDD: tests for ongoing development of counter tags in C-Find
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
70
diff
changeset
|
3132 self.assertTrue('3 ' in s) |
|
48740070cbf1
TDD: tests for ongoing development of counter tags in C-Find
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
70
diff
changeset
|
3133 |
|
48740070cbf1
TDD: tests for ongoing development of counter tags in C-Find
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
70
diff
changeset
|
3134 i = CallFindScu([ '-k', '0008,0052=SERIES', '-k', 'NumberOfSeriesRelatedInstances' ]) |
|
48740070cbf1
TDD: tests for ongoing development of counter tags in C-Find
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
70
diff
changeset
|
3135 s = re.findall('\(0020,1209\).*?\[(.*?)\]', i) |
|
48740070cbf1
TDD: tests for ongoing development of counter tags in C-Find
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
70
diff
changeset
|
3136 self.assertEqual(2, len(s)) |
|
48740070cbf1
TDD: tests for ongoing development of counter tags in C-Find
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
70
diff
changeset
|
3137 self.assertTrue('1 ' in s) |
|
48740070cbf1
TDD: tests for ongoing development of counter tags in C-Find
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
70
diff
changeset
|
3138 self.assertTrue('2 ' in s) |
|
48740070cbf1
TDD: tests for ongoing development of counter tags in C-Find
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
70
diff
changeset
|
3139 |
|
48740070cbf1
TDD: tests for ongoing development of counter tags in C-Find
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
70
diff
changeset
|
3140 i = CallFindScu([ '-k', '0008,0052=STUDY', '-k', 'ModalitiesInStudy' ]) |
|
48740070cbf1
TDD: tests for ongoing development of counter tags in C-Find
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
70
diff
changeset
|
3141 s = re.findall('\(0008,0061\).*?\[(.*?)\]', i) |
|
48740070cbf1
TDD: tests for ongoing development of counter tags in C-Find
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
70
diff
changeset
|
3142 self.assertEqual(1, len(s)) |
|
48740070cbf1
TDD: tests for ongoing development of counter tags in C-Find
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
70
diff
changeset
|
3143 t = map(lambda x: x.strip(), s[0].split('\\')) |
|
48740070cbf1
TDD: tests for ongoing development of counter tags in C-Find
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
70
diff
changeset
|
3144 self.assertTrue('PT' in t) |
|
48740070cbf1
TDD: tests for ongoing development of counter tags in C-Find
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
70
diff
changeset
|
3145 self.assertTrue('CT' in t) |
|
48740070cbf1
TDD: tests for ongoing development of counter tags in C-Find
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
70
diff
changeset
|
3146 |
|
48740070cbf1
TDD: tests for ongoing development of counter tags in C-Find
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
70
diff
changeset
|
3147 i = CallFindScu([ '-k', '0008,0052=STUDY', '-k', 'SOPClassesInStudy' ]) |
|
48740070cbf1
TDD: tests for ongoing development of counter tags in C-Find
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
70
diff
changeset
|
3148 s = re.findall('\(0008,0062\).*?\[(.*?)\]', i) |
|
48740070cbf1
TDD: tests for ongoing development of counter tags in C-Find
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
70
diff
changeset
|
3149 self.assertEqual(1, len(s)) |
|
176
48cc188ffb09
strip trailing 0 char that appears with some findscu versions
am@osimis.io
parents:
175
diff
changeset
|
3150 t = map(lambda x: x.strip('\x00'), s[0].split('\\')) |
|
71
48740070cbf1
TDD: tests for ongoing development of counter tags in C-Find
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
70
diff
changeset
|
3151 self.assertTrue('1.2.840.10008.5.1.4.1.1.2' in t) |
|
48740070cbf1
TDD: tests for ongoing development of counter tags in C-Find
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
70
diff
changeset
|
3152 self.assertTrue('1.2.840.10008.5.1.4.1.1.128' in t) |
|
48740070cbf1
TDD: tests for ongoing development of counter tags in C-Find
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
70
diff
changeset
|
3153 |
|
48740070cbf1
TDD: tests for ongoing development of counter tags in C-Find
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
70
diff
changeset
|
3154 |
|
78
b89af51797ff
test_decode_transfer_syntax
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
74
diff
changeset
|
3155 def test_decode_transfer_syntax(self): |
|
b89af51797ff
test_decode_transfer_syntax
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
74
diff
changeset
|
3156 def Check(t, md5): |
|
b89af51797ff
test_decode_transfer_syntax
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
74
diff
changeset
|
3157 i = UploadInstance(_REMOTE, 'TransferSyntaxes/%s.dcm' % t)['ID'] |
|
b89af51797ff
test_decode_transfer_syntax
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
74
diff
changeset
|
3158 |
|
89
74b7b9aed5f8
test TransferSyntax metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
87
diff
changeset
|
3159 if t != '1.2.840.10008.1.2': # This file has no meta header |
|
74b7b9aed5f8
test TransferSyntax metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
87
diff
changeset
|
3160 transferSyntax = DoGet(_REMOTE, '/instances/%s/metadata/TransferSyntax' % i) |
|
74b7b9aed5f8
test TransferSyntax metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
87
diff
changeset
|
3161 self.assertEqual(t, transferSyntax) |
|
74b7b9aed5f8
test TransferSyntax metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
87
diff
changeset
|
3162 |
|
78
b89af51797ff
test_decode_transfer_syntax
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
74
diff
changeset
|
3163 if md5 == None: |
|
b89af51797ff
test_decode_transfer_syntax
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
74
diff
changeset
|
3164 self.assertRaises(Exception, lambda: DoGet(_REMOTE, '/instances/%s/preview' % i)) |
|
b89af51797ff
test_decode_transfer_syntax
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
74
diff
changeset
|
3165 else: |
|
b89af51797ff
test_decode_transfer_syntax
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
74
diff
changeset
|
3166 m = ComputeMD5(DoGet(_REMOTE, '/instances/%s/preview' % i)) |
|
b89af51797ff
test_decode_transfer_syntax
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
74
diff
changeset
|
3167 self.assertEqual(m, md5) |
|
b89af51797ff
test_decode_transfer_syntax
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
74
diff
changeset
|
3168 |
|
b89af51797ff
test_decode_transfer_syntax
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
74
diff
changeset
|
3169 Check('1.2.840.10008.1.2.1', 'fae08d5415c4c0cd2cdbae4522408631') |
|
b89af51797ff
test_decode_transfer_syntax
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
74
diff
changeset
|
3170 Check('1.2.840.10008.1.2.2', 'f3d9784768b8feb54d6a50b6d5c37682') |
| 323 | 3171 Check('1.2.840.10008.1.2.4.50', '496326046974eea718dbc16b997c646b') # TODO - Doesn't work with GDCM 3.0.7 alone |
|
78
b89af51797ff
test_decode_transfer_syntax
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
74
diff
changeset
|
3172 Check('1.2.840.10008.1.2.4.51', 'ccbe75909fe5c9f7361b48416a53fc41') |
|
b89af51797ff
test_decode_transfer_syntax
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
74
diff
changeset
|
3173 Check('1.2.840.10008.1.2.4.57', '7bbefe11d976b1be4e568915c6a82fc3') |
|
b89af51797ff
test_decode_transfer_syntax
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
74
diff
changeset
|
3174 Check('1.2.840.10008.1.2.4.70', '7132cfbc457305b04b59787030c785d2') |
|
b89af51797ff
test_decode_transfer_syntax
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
74
diff
changeset
|
3175 Check('1.2.840.10008.1.2.4.80', '6ff51ae525d362e0d04f550a64075a0e') |
|
b89af51797ff
test_decode_transfer_syntax
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
74
diff
changeset
|
3176 Check('1.2.840.10008.1.2.4.81', '801579ae7cbf28e604ea74f2c99fa2ca') |
|
b89af51797ff
test_decode_transfer_syntax
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
74
diff
changeset
|
3177 Check('1.2.840.10008.1.2.5', '6ff51ae525d362e0d04f550a64075a0e') # RLE, supported since Orthanc 1.0.1 |
|
b89af51797ff
test_decode_transfer_syntax
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
74
diff
changeset
|
3178 Check('1.2.840.10008.1.2', 'd54aed9f67a100984b42942cc2e9939b') |
|
299
c2144cf4bd83
HasGdcmPlugin() test
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293
diff
changeset
|
3179 |
|
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parents:
293
diff
changeset
|
3180 # JPEG2k image, not supported without GDCM plugin |
| 304 | 3181 if not HasGdcmPlugin(_REMOTE): |
|
299
c2144cf4bd83
HasGdcmPlugin() test
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parents:
293
diff
changeset
|
3182 Check('1.2.840.10008.1.2.4.90', None) |
|
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diff
changeset
|
3183 Check('1.2.840.10008.1.2.4.91', None) |
| 79 | 3184 |
| 3185 | |
| 3186 def test_raw_frame(self): | |
| 3187 s = UploadInstance(_REMOTE, 'Issue22.dcm')['ID'] | |
| 3188 self.assertEqual(24, len(DoGet(_REMOTE, '/instances/%s/frames' % s))) | |
| 3189 a = DoGet(_REMOTE, '/instances/%s/frames/0/raw' % s) | |
| 3190 self.assertEqual(512 * 512 * 2, len(a)) | |
| 3191 self.assertEqual(512 * 512 * 2, len(DoGet(_REMOTE, '/instances/%s/frames/23/raw' % s))) | |
| 3192 self.assertRaises(Exception, lambda: DoGet(_REMOTE, '/instances/%s/frames/24/raw' % s)) | |
| 3193 self.assertEqual('1914287dc4d958eca21fdaacfb3482fa', ComputeMD5(a)) | |
| 3194 | |
| 3195 s = UploadInstance(_REMOTE, 'Multiframe.dcm')['ID'] | |
| 3196 self.assertEqual(76, len(DoGet(_REMOTE, '/instances/%s/frames' % s))) | |
| 3197 self.assertEqual(186274, len(DoGet(_REMOTE, '/instances/%s/frames/0/raw' % s))) | |
| 3198 self.assertEqual(189424, len(DoGet(_REMOTE, '/instances/%s/frames/75/raw' % s))) | |
| 3199 self.assertRaises(Exception, lambda: DoGet(_REMOTE, '/instances/%s/frames/76/raw' % s)) | |
| 3200 im = GetImage(_REMOTE, '/instances/%s/frames/0/raw' % s) | |
| 3201 self.assertEqual("L", im.mode) | |
| 3202 self.assertEqual(512, im.size[0]) | |
| 3203 self.assertEqual(512, im.size[1]) | |
| 3204 | |
| 3205 # Test an image with 2 JPEG frames spread over multiple fragments | |
| 3206 s = UploadInstance(_REMOTE, 'LenaTwiceWithFragments.dcm')['ID'] | |
| 3207 self.assertEqual(2, len(DoGet(_REMOTE, '/instances/%s/frames' % s))) | |
| 3208 a = DoGet(_REMOTE, '/instances/%s/frames/0/raw' % s) | |
| 3209 b = DoGet(_REMOTE, '/instances/%s/frames/1/raw' % s) | |
| 3210 self.assertEqual(69214, len(a)) | |
| 3211 self.assertEqual(ComputeMD5(a), ComputeMD5(b)) | |
| 3212 self.assertRaises(Exception, lambda: DoGet(_REMOTE, '/instances/%s/frames/2/raw' % s)) | |
| 3213 im = GetImage(_REMOTE, '/instances/%s/frames/0/raw' % s) | |
| 3214 self.assertEqual("RGB", im.mode) | |
| 3215 self.assertEqual(512, im.size[0]) | |
| 3216 self.assertEqual(512, im.size[1]) | |
| 323 | 3217 im = GetImage(_REMOTE, '/instances/%s/frames/0/preview' % s) # TODO - Doesn't work with GDCM 3.0.7 alone |
| 79 | 3218 self.assertEqual("RGB", im.mode) |
| 3219 self.assertEqual(512, im.size[0]) | |
| 3220 self.assertEqual(512, im.size[1]) | |
| 81 | 3221 |
| 3222 | |
| 3223 | |
| 3224 def test_rest_movescu(self): | |
| 3225 self.assertEqual(0, len(DoGet(_REMOTE, '/patients'))) | |
| 3226 | |
| 3227 # Upload 4 instances | |
| 3228 UploadInstance(_REMOTE, 'Brainix/Flair/IM-0001-0001.dcm') | |
| 3229 UploadInstance(_REMOTE, 'Brainix/Flair/IM-0001-0002.dcm') | |
| 3230 UploadInstance(_REMOTE, 'Brainix/Epi/IM-0001-0001.dcm') | |
| 3231 UploadInstance(_REMOTE, 'Knee/T2/IM-0001-0001.dcm') | |
| 3232 | |
| 3233 self.assertEqual(2, len(DoGet(_REMOTE, '/patients'))) | |
| 3234 for p in DoGet(_REMOTE, '/patients'): | |
| 3235 DoPost(_REMOTE, '/modalities/orthanctest/store', p) | |
| 3236 DoDelete(_REMOTE, '/patients/%s' % p) | |
| 3237 | |
| 3238 self.assertEqual(0, len(DoGet(_REMOTE, '/patients'))) | |
| 3239 | |
| 3240 # Upload instance Brainix/Flair/IM-0001-0001.dcm | |
| 3241 DoPost(_REMOTE, '/modalities/orthanctest/move', { 'Level' : 'Instance', | |
| 3242 'Resources' : [ | |
| 3243 { | |
| 3244 'StudyInstanceUID' : '2.16.840.1.113669.632.20.1211.10000357775', | |
| 3245 'SeriesInstanceUID' : '1.3.46.670589.11.0.0.11.4.2.0.8743.5.5396.2006120114285654497', | |
| 3246 'SOPInstanceUID' : '1.3.46.670589.11.0.0.11.4.2.0.8743.5.5396.2006120114314079549', | |
| 3247 } | |
| 3248 ]}) | |
| 3249 | |
| 3250 # Upload series Brainix/Flair/* | |
| 3251 self.assertEqual(1, len(DoGet(_REMOTE, '/patients'))) | |
| 3252 self.assertEqual(1, len(DoGet(_REMOTE, '/studies'))) | |
| 3253 self.assertEqual(1, len(DoGet(_REMOTE, '/series'))) | |
| 3254 self.assertEqual(1, len(DoGet(_REMOTE, '/instances'))) | |
| 3255 | |
| 3256 DoPost(_REMOTE, '/modalities/orthanctest/move', { 'Level' : 'Series', | |
| 3257 'Resources' : [ | |
| 3258 { | |
| 3259 'StudyInstanceUID' : '2.16.840.1.113669.632.20.1211.10000357775', | |
| 3260 'SeriesInstanceUID' : '1.3.46.670589.11.0.0.11.4.2.0.8743.5.5396.2006120114285654497', | |
| 3261 } | |
| 3262 ]}) | |
| 3263 self.assertEqual(1, len(DoGet(_REMOTE, '/patients'))) | |
| 3264 self.assertEqual(1, len(DoGet(_REMOTE, '/studies'))) | |
| 3265 self.assertEqual(1, len(DoGet(_REMOTE, '/series'))) | |
| 3266 self.assertEqual(2, len(DoGet(_REMOTE, '/instances'))) | |
| 3267 | |
| 3268 # Upload series Brainix/Epi/* | |
| 3269 DoPost(_REMOTE, '/modalities/orthanctest/move', { 'Level' : 'Series', | |
| 3270 'Resources' : [ | |
| 3271 { | |
| 3272 'StudyInstanceUID' : '2.16.840.1.113669.632.20.1211.10000357775', | |
| 3273 'SeriesInstanceUID' : '1.3.46.670589.11.0.0.11.4.2.0.8743.5.5396.2006120114314125550', | |
| 3274 } | |
| 3275 ]}) | |
| 3276 self.assertEqual(1, len(DoGet(_REMOTE, '/patients'))) | |
| 3277 self.assertEqual(1, len(DoGet(_REMOTE, '/studies'))) | |
| 3278 self.assertEqual(2, len(DoGet(_REMOTE, '/series'))) | |
| 3279 self.assertEqual(3, len(DoGet(_REMOTE, '/instances'))) | |
| 3280 | |
| 3281 # Upload study Knee/* | |
| 3282 DoPost(_REMOTE, '/modalities/orthanctest/move', { 'Level' : 'Study', | |
| 3283 'Resources' : [ | |
| 3284 { | |
| 3285 'StudyInstanceUID' : '2.16.840.1.113669.632.20.121711.10000160881', | |
| 3286 } | |
| 3287 ]}) | |
| 3288 self.assertEqual(2, len(DoGet(_REMOTE, '/patients'))) | |
| 3289 self.assertEqual(2, len(DoGet(_REMOTE, '/studies'))) | |
| 3290 self.assertEqual(3, len(DoGet(_REMOTE, '/series'))) | |
| 3291 self.assertEqual(4, len(DoGet(_REMOTE, '/instances'))) | |
| 3292 | |
| 3293 # Reset | |
| 3294 for p in DoGet(_REMOTE, '/patients'): | |
| 3295 DoDelete(_REMOTE, '/patients/%s' % p) | |
| 3296 | |
| 3297 self.assertEqual(0, len(DoGet(_REMOTE, '/patients'))) | |
| 3298 | |
| 3299 | |
| 3300 # Upload all at once | |
| 3301 DoPost(_REMOTE, '/modalities/orthanctest/move', { 'Level' : 'Study', | |
| 3302 'Resources' : [ | |
| 3303 { | |
| 3304 'StudyInstanceUID' : '2.16.840.1.113669.632.20.121711.10000160881', | |
| 3305 }, | |
| 3306 { | |
| 3307 'StudyInstanceUID' : '2.16.840.1.113669.632.20.1211.10000357775', | |
| 3308 } | |
| 3309 ]}) | |
| 3310 self.assertEqual(2, len(DoGet(_REMOTE, '/patients'))) | |
| 3311 self.assertEqual(2, len(DoGet(_REMOTE, '/studies'))) | |
| 3312 self.assertEqual(3, len(DoGet(_REMOTE, '/series'))) | |
| 3313 self.assertEqual(4, len(DoGet(_REMOTE, '/instances'))) | |
| 3314 | |
|
86
0401ef51f5c1
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parents:
83
diff
changeset
|
3315 |
|
0401ef51f5c1
test_reconstruct_json
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
83
diff
changeset
|
3316 |
|
0401ef51f5c1
test_reconstruct_json
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
83
diff
changeset
|
3317 def test_reconstruct_json(self): |
|
0401ef51f5c1
test_reconstruct_json
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
83
diff
changeset
|
3318 self.assertEqual(0, len(DoGet(_REMOTE, '/patients'))) |
|
0401ef51f5c1
test_reconstruct_json
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
83
diff
changeset
|
3319 |
|
0401ef51f5c1
test_reconstruct_json
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parents:
83
diff
changeset
|
3320 instance = UploadInstance(_REMOTE, 'DummyCT.dcm')['ID'] |
|
0401ef51f5c1
test_reconstruct_json
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
83
diff
changeset
|
3321 first = DoGet(_REMOTE, '/instances/%s/tags' % instance) |
|
0401ef51f5c1
test_reconstruct_json
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
83
diff
changeset
|
3322 |
|
0401ef51f5c1
test_reconstruct_json
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
83
diff
changeset
|
3323 self.assertEqual('TWINOW', first['0008,1010']['Value']) |
|
0401ef51f5c1
test_reconstruct_json
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
83
diff
changeset
|
3324 self.assertEqual(2, len(DoGet(_REMOTE, '/instances/%s/attachments' % instance))) |
|
0401ef51f5c1
test_reconstruct_json
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
83
diff
changeset
|
3325 |
|
0401ef51f5c1
test_reconstruct_json
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
83
diff
changeset
|
3326 # Cannot delete the "DICOM" attachment |
|
0401ef51f5c1
test_reconstruct_json
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
83
diff
changeset
|
3327 self.assertRaises(Exception, lambda: DoDelete(_REMOTE, '/instances/%s/attachments/dicom' % instance)) |
|
0401ef51f5c1
test_reconstruct_json
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
83
diff
changeset
|
3328 |
|
0401ef51f5c1
test_reconstruct_json
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
83
diff
changeset
|
3329 # Can delete the "DICOM as JSON" attachment |
|
0401ef51f5c1
test_reconstruct_json
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
83
diff
changeset
|
3330 r = DoDelete(_REMOTE, '/instances/%s/attachments/dicom-as-json' % instance) |
|
0401ef51f5c1
test_reconstruct_json
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
83
diff
changeset
|
3331 self.assertTrue(type(r) is dict and len(r) == 0) |
|
0401ef51f5c1
test_reconstruct_json
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
83
diff
changeset
|
3332 |
|
0401ef51f5c1
test_reconstruct_json
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
83
diff
changeset
|
3333 # Only the "DICOM" attachment subsists |
|
0401ef51f5c1
test_reconstruct_json
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
83
diff
changeset
|
3334 self.assertEqual(1, len(DoGet(_REMOTE, '/instances/%s/attachments' % instance))) |
|
0401ef51f5c1
test_reconstruct_json
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
83
diff
changeset
|
3335 |
|
0401ef51f5c1
test_reconstruct_json
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
83
diff
changeset
|
3336 # Cannot manually reconstruct the "DICOM as JSON" attachment |
|
0401ef51f5c1
test_reconstruct_json
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
83
diff
changeset
|
3337 self.assertRaises(Exception, lambda: DoPut(_REMOTE, '/patients/%s/attachments/dicom-as-json' % patient, 'hello')) |
|
0401ef51f5c1
test_reconstruct_json
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
83
diff
changeset
|
3338 |
|
0401ef51f5c1
test_reconstruct_json
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
83
diff
changeset
|
3339 # Transparently reconstruct the "DICOM as JSON" attachment |
|
0401ef51f5c1
test_reconstruct_json
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
83
diff
changeset
|
3340 self.assertRaises(Exception, lambda: DoGet(_REMOTE, '/instances/%s/attachments/dicom-as-json' % instance)) |
|
0401ef51f5c1
test_reconstruct_json
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
83
diff
changeset
|
3341 second = DoGet(_REMOTE, '/instances/%s/tags' % instance) |
|
0401ef51f5c1
test_reconstruct_json
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
83
diff
changeset
|
3342 self.assertEqual(2, len(DoGet(_REMOTE, '/instances/%s/attachments' % instance))) |
|
0401ef51f5c1
test_reconstruct_json
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
83
diff
changeset
|
3343 |
|
0401ef51f5c1
test_reconstruct_json
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
83
diff
changeset
|
3344 third = DoGet(_REMOTE, '/instances/%s/attachments/dicom-as-json/data' % instance) |
|
0401ef51f5c1
test_reconstruct_json
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
83
diff
changeset
|
3345 self.assertEqual(str(first), str(second)) |
|
0401ef51f5c1
test_reconstruct_json
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
83
diff
changeset
|
3346 self.assertEqual(str(first), str(third)) |
|
87
4b24faec842b
test_reconstruct_json2 + test_private_tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
86
diff
changeset
|
3347 |
|
4b24faec842b
test_reconstruct_json2 + test_private_tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
86
diff
changeset
|
3348 |
|
4b24faec842b
test_reconstruct_json2 + test_private_tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
86
diff
changeset
|
3349 def test_reconstruct_json2(self): |
|
4b24faec842b
test_reconstruct_json2 + test_private_tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
86
diff
changeset
|
3350 self.assertEqual(0, len(DoGet(_REMOTE, '/patients'))) |
|
4b24faec842b
test_reconstruct_json2 + test_private_tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
86
diff
changeset
|
3351 |
|
4b24faec842b
test_reconstruct_json2 + test_private_tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
86
diff
changeset
|
3352 a = UploadInstance(_REMOTE, 'Brainix/Flair/IM-0001-0001.dcm')['ID'] |
|
4b24faec842b
test_reconstruct_json2 + test_private_tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
86
diff
changeset
|
3353 b = UploadInstance(_REMOTE, 'Knee/T2/IM-0001-0001.dcm')['ID'] |
|
4b24faec842b
test_reconstruct_json2 + test_private_tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
86
diff
changeset
|
3354 |
|
4b24faec842b
test_reconstruct_json2 + test_private_tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
86
diff
changeset
|
3355 self.assertEqual('BRAINIX', DoGet(_REMOTE, '/instances/%s/tags?simplify' % a)['PatientName']) |
|
4b24faec842b
test_reconstruct_json2 + test_private_tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
86
diff
changeset
|
3356 self.assertEqual('KNEE', DoGet(_REMOTE, '/instances/%s/tags?simplify' % b)['PatientName']) |
|
4b24faec842b
test_reconstruct_json2 + test_private_tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
86
diff
changeset
|
3357 |
|
4b24faec842b
test_reconstruct_json2 + test_private_tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
86
diff
changeset
|
3358 self.assertEqual(2, len(DoGet(_REMOTE, '/instances/%s/attachments' % a))) |
|
4b24faec842b
test_reconstruct_json2 + test_private_tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
86
diff
changeset
|
3359 self.assertEqual(2, len(DoGet(_REMOTE, '/instances/%s/attachments' % b))) |
|
4b24faec842b
test_reconstruct_json2 + test_private_tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
86
diff
changeset
|
3360 |
|
4b24faec842b
test_reconstruct_json2 + test_private_tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
86
diff
changeset
|
3361 DoPost(_REMOTE, '/tools/invalidate-tags', '', 'text/plain') |
|
4b24faec842b
test_reconstruct_json2 + test_private_tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
86
diff
changeset
|
3362 |
|
4b24faec842b
test_reconstruct_json2 + test_private_tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
86
diff
changeset
|
3363 self.assertEqual(1, len(DoGet(_REMOTE, '/instances/%s/attachments' % a))) |
|
4b24faec842b
test_reconstruct_json2 + test_private_tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
86
diff
changeset
|
3364 self.assertEqual(1, len(DoGet(_REMOTE, '/instances/%s/attachments' % b))) |
|
4b24faec842b
test_reconstruct_json2 + test_private_tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
86
diff
changeset
|
3365 |
|
4b24faec842b
test_reconstruct_json2 + test_private_tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
86
diff
changeset
|
3366 self.assertEqual('BRAINIX', DoGet(_REMOTE, '/instances/%s/tags?simplify' % a)['PatientName']) |
|
4b24faec842b
test_reconstruct_json2 + test_private_tags
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parents:
86
diff
changeset
|
3367 self.assertEqual('KNEE', DoGet(_REMOTE, '/instances/%s/tags?simplify' % b)['PatientName']) |
|
4b24faec842b
test_reconstruct_json2 + test_private_tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
86
diff
changeset
|
3368 |
|
4b24faec842b
test_reconstruct_json2 + test_private_tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
86
diff
changeset
|
3369 self.assertEqual(2, len(DoGet(_REMOTE, '/instances/%s/attachments' % a))) |
|
4b24faec842b
test_reconstruct_json2 + test_private_tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
86
diff
changeset
|
3370 self.assertEqual(2, len(DoGet(_REMOTE, '/instances/%s/attachments' % b))) |
|
4b24faec842b
test_reconstruct_json2 + test_private_tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
86
diff
changeset
|
3371 |
|
4b24faec842b
test_reconstruct_json2 + test_private_tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
86
diff
changeset
|
3372 |
|
4b24faec842b
test_reconstruct_json2 + test_private_tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
86
diff
changeset
|
3373 def test_private_tags(self): |
|
4b24faec842b
test_reconstruct_json2 + test_private_tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
86
diff
changeset
|
3374 i = UploadInstance(_REMOTE, 'PrivateMDNTags.dcm')['ID'] |
|
4b24faec842b
test_reconstruct_json2 + test_private_tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
86
diff
changeset
|
3375 t = DoGet(_REMOTE, '/instances/%s/tags?simplify' % i) |
|
4b24faec842b
test_reconstruct_json2 + test_private_tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
86
diff
changeset
|
3376 self.assertEqual('1.2.840.113704.1.111.6320.1342451261.21', t['PET-CT Multi Modality Name']) |
|
4b24faec842b
test_reconstruct_json2 + test_private_tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
86
diff
changeset
|
3377 self.assertEqual('p37s0_na_ctac.img', t['Original Image Filename']) |
|
4b24faec842b
test_reconstruct_json2 + test_private_tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
86
diff
changeset
|
3378 |
|
92
dbcbffb889da
test_findscu_encoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
89
diff
changeset
|
3379 |
|
dbcbffb889da
test_findscu_encoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
89
diff
changeset
|
3380 def test_findscu_encoding(self): |
|
dbcbffb889da
test_findscu_encoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
89
diff
changeset
|
3381 # Check out ../Database/Encodings/Generate.sh |
|
dbcbffb889da
test_findscu_encoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
89
diff
changeset
|
3382 TEST = u'Test-éüäöòДΘĝדصķћ๛ﾈİ' |
|
dbcbffb889da
test_findscu_encoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
89
diff
changeset
|
3383 ENCODINGS = { |
|
dbcbffb889da
test_findscu_encoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
89
diff
changeset
|
3384 'Arabic' : [ 'ISO_IR 127' ], |
|
dbcbffb889da
test_findscu_encoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
89
diff
changeset
|
3385 'Ascii' : [ 'ISO_IR 6' ], # More accurately, ISO 646 |
|
dbcbffb889da
test_findscu_encoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
89
diff
changeset
|
3386 'Cyrillic' : [ 'ISO_IR 144' ], |
|
dbcbffb889da
test_findscu_encoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
89
diff
changeset
|
3387 'Greek' : [ 'ISO_IR 126' ], |
|
dbcbffb889da
test_findscu_encoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
89
diff
changeset
|
3388 'Hebrew' : [ 'ISO_IR 138' ], |
|
dbcbffb889da
test_findscu_encoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
89
diff
changeset
|
3389 'Japanese' : [ 'ISO_IR 13', 'shift-jis' ], |
|
dbcbffb889da
test_findscu_encoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
89
diff
changeset
|
3390 'Latin1' : [ 'ISO_IR 100' ], |
|
dbcbffb889da
test_findscu_encoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
89
diff
changeset
|
3391 'Latin2' : [ 'ISO_IR 101' ], |
|
dbcbffb889da
test_findscu_encoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
89
diff
changeset
|
3392 'Latin3' : [ 'ISO_IR 109' ], |
|
dbcbffb889da
test_findscu_encoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
89
diff
changeset
|
3393 'Latin4' : [ 'ISO_IR 110' ], |
|
dbcbffb889da
test_findscu_encoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
89
diff
changeset
|
3394 'Latin5' : [ 'ISO_IR 148' ], |
|
dbcbffb889da
test_findscu_encoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
89
diff
changeset
|
3395 'Thai' : [ 'ISO_IR 166', 'tis-620' ], |
|
dbcbffb889da
test_findscu_encoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
89
diff
changeset
|
3396 'Utf8' : [ 'ISO_IR 192' ], |
|
dbcbffb889da
test_findscu_encoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
89
diff
changeset
|
3397 } |
|
dbcbffb889da
test_findscu_encoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
89
diff
changeset
|
3398 |
|
dbcbffb889da
test_findscu_encoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
89
diff
changeset
|
3399 for name in ENCODINGS.iterkeys(): |
|
dbcbffb889da
test_findscu_encoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
89
diff
changeset
|
3400 if len(ENCODINGS[name]) == 1: |
|
dbcbffb889da
test_findscu_encoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
89
diff
changeset
|
3401 ENCODINGS[name].append(name.lower()) |
|
dbcbffb889da
test_findscu_encoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
89
diff
changeset
|
3402 |
|
dbcbffb889da
test_findscu_encoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
89
diff
changeset
|
3403 UploadInstance(_REMOTE, 'Encodings/Lena-utf8.dcm') |
|
dbcbffb889da
test_findscu_encoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
89
diff
changeset
|
3404 |
|
dbcbffb889da
test_findscu_encoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
89
diff
changeset
|
3405 for name in ENCODINGS.iterkeys(): |
|
dbcbffb889da
test_findscu_encoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
89
diff
changeset
|
3406 self.assertEqual(name, DoPut(_REMOTE, '/tools/default-encoding', name)) |
|
dbcbffb889da
test_findscu_encoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
89
diff
changeset
|
3407 self.assertEqual(name, DoGet(_REMOTE, '/tools/default-encoding')) |
|
dbcbffb889da
test_findscu_encoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
89
diff
changeset
|
3408 |
|
dbcbffb889da
test_findscu_encoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
89
diff
changeset
|
3409 i = CallFindScu([ '-k', '0008,0052=STUDY', |
|
dbcbffb889da
test_findscu_encoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
89
diff
changeset
|
3410 '-k', 'SpecificCharacterSet', |
|
dbcbffb889da
test_findscu_encoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
89
diff
changeset
|
3411 '-k', 'PatientName' ]) |
|
dbcbffb889da
test_findscu_encoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
89
diff
changeset
|
3412 |
|
dbcbffb889da
test_findscu_encoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
89
diff
changeset
|
3413 characterSet = re.findall('\(0008,0005\).*?\[(.*?)\]', i) |
|
dbcbffb889da
test_findscu_encoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
89
diff
changeset
|
3414 self.assertEqual(1, len(characterSet)) |
|
dbcbffb889da
test_findscu_encoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
89
diff
changeset
|
3415 self.assertEqual(ENCODINGS[name][0], characterSet[0].strip()) |
|
dbcbffb889da
test_findscu_encoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
89
diff
changeset
|
3416 |
|
dbcbffb889da
test_findscu_encoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
89
diff
changeset
|
3417 patientName = re.findall('\(0010,0010\).*?\[(.*?)\]', i) |
|
dbcbffb889da
test_findscu_encoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
89
diff
changeset
|
3418 self.assertEqual(1, len(patientName)) |
|
dbcbffb889da
test_findscu_encoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
89
diff
changeset
|
3419 |
|
dbcbffb889da
test_findscu_encoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
89
diff
changeset
|
3420 expected = TEST.encode(ENCODINGS[name][1], 'ignore') |
|
dbcbffb889da
test_findscu_encoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
89
diff
changeset
|
3421 self.assertEqual(expected, patientName[0].strip()) |
|
dbcbffb889da
test_findscu_encoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
89
diff
changeset
|
3422 |
|
dbcbffb889da
test_findscu_encoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
89
diff
changeset
|
3423 |
|
dbcbffb889da
test_findscu_encoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
89
diff
changeset
|
3424 #for master in ENCODINGS: |
|
dbcbffb889da
test_findscu_encoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
89
diff
changeset
|
3425 for master in [ 'Latin1', 'Utf8', 'Cyrillic' ]: # Shortcut to speedup tests |
|
dbcbffb889da
test_findscu_encoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
89
diff
changeset
|
3426 self.assertEqual(master, DoPut(_REMOTE, '/tools/default-encoding', master)) |
|
dbcbffb889da
test_findscu_encoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
89
diff
changeset
|
3427 self.assertEqual(master, DoGet(_REMOTE, '/tools/default-encoding')) |
|
dbcbffb889da
test_findscu_encoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
89
diff
changeset
|
3428 |
|
dbcbffb889da
test_findscu_encoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
89
diff
changeset
|
3429 for name in ENCODINGS: |
|
dbcbffb889da
test_findscu_encoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
89
diff
changeset
|
3430 DropOrthanc(_REMOTE) |
|
dbcbffb889da
test_findscu_encoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
89
diff
changeset
|
3431 UploadInstance(_REMOTE, 'Encodings/Lena-%s.dcm' % ENCODINGS[name][1]) |
|
dbcbffb889da
test_findscu_encoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
89
diff
changeset
|
3432 |
|
dbcbffb889da
test_findscu_encoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
89
diff
changeset
|
3433 i = CallFindScu([ '-k', '0008,0052=STUDY', |
|
dbcbffb889da
test_findscu_encoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
89
diff
changeset
|
3434 '-k', 'PatientID', |
|
dbcbffb889da
test_findscu_encoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
89
diff
changeset
|
3435 '-k', 'SpecificCharacterSet', |
|
dbcbffb889da
test_findscu_encoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
89
diff
changeset
|
3436 '-k', 'PatientName' ]) |
|
dbcbffb889da
test_findscu_encoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
89
diff
changeset
|
3437 i = i.decode(ENCODINGS[master][1]) |
|
dbcbffb889da
test_findscu_encoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
89
diff
changeset
|
3438 |
|
dbcbffb889da
test_findscu_encoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
89
diff
changeset
|
3439 characterSet = re.findall('\(0008,0005\).*?\[(.*?)\]', i) |
|
dbcbffb889da
test_findscu_encoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
89
diff
changeset
|
3440 self.assertEqual(1, len(characterSet)) |
|
dbcbffb889da
test_findscu_encoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
89
diff
changeset
|
3441 self.assertEqual(ENCODINGS[master][0], characterSet[0].strip()) |
|
dbcbffb889da
test_findscu_encoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
89
diff
changeset
|
3442 |
|
dbcbffb889da
test_findscu_encoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
89
diff
changeset
|
3443 patientId = re.findall('\(0010,0020\).*?\[(.*?)\]', i) |
|
dbcbffb889da
test_findscu_encoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
89
diff
changeset
|
3444 self.assertEqual(1, len(patientId)) |
|
dbcbffb889da
test_findscu_encoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
89
diff
changeset
|
3445 self.assertEqual(ENCODINGS[name][1], patientId[0].strip()) |
|
dbcbffb889da
test_findscu_encoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
89
diff
changeset
|
3446 |
|
dbcbffb889da
test_findscu_encoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
89
diff
changeset
|
3447 patientName = re.findall('\(0010,0010\).*?\[(.*?)\]', i) |
|
dbcbffb889da
test_findscu_encoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
89
diff
changeset
|
3448 self.assertEqual(1, len(patientName)) |
|
dbcbffb889da
test_findscu_encoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
89
diff
changeset
|
3449 |
|
dbcbffb889da
test_findscu_encoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
89
diff
changeset
|
3450 tmp = ENCODINGS[name][1] |
|
dbcbffb889da
test_findscu_encoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
89
diff
changeset
|
3451 expected = TEST.encode(tmp, 'ignore').decode(tmp) |
|
dbcbffb889da
test_findscu_encoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
89
diff
changeset
|
3452 tmp = ENCODINGS[master][1] |
|
dbcbffb889da
test_findscu_encoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
89
diff
changeset
|
3453 expected = expected.encode(tmp, 'ignore').decode(tmp) |
|
dbcbffb889da
test_findscu_encoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
89
diff
changeset
|
3454 |
|
dbcbffb889da
test_findscu_encoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
89
diff
changeset
|
3455 self.assertEqual(expected, patientName[0].strip()) |
|
dbcbffb889da
test_findscu_encoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
89
diff
changeset
|
3456 |
|
dbcbffb889da
test_findscu_encoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
89
diff
changeset
|
3457 |
|
dbcbffb889da
test_findscu_encoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
89
diff
changeset
|
3458 a = DoPost(_REMOTE, '/tools/find', { 'Expand' : True, |
|
dbcbffb889da
test_findscu_encoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
89
diff
changeset
|
3459 'Level' : 'Study', |
|
dbcbffb889da
test_findscu_encoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
89
diff
changeset
|
3460 'Query' : { }}) |
|
dbcbffb889da
test_findscu_encoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
89
diff
changeset
|
3461 self.assertEqual(1, len(a)) |
|
dbcbffb889da
test_findscu_encoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
89
diff
changeset
|
3462 |
|
dbcbffb889da
test_findscu_encoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
89
diff
changeset
|
3463 tmp = ENCODINGS[name][1] |
|
dbcbffb889da
test_findscu_encoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
89
diff
changeset
|
3464 self.assertEqual(TEST.encode(tmp, 'ignore').decode(tmp), a[0]["PatientMainDicomTags"]["PatientName"]) |
|
96
272d1229cb49
test reconstruction of tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
95
diff
changeset
|
3465 |
| 314 | 3466 # Back to UTF-8 |
| 3467 self.assertEqual('Utf8', DoPut(_REMOTE, '/tools/default-encoding', 'Utf8')) | |
| 3468 | |
|
96
272d1229cb49
test reconstruction of tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
95
diff
changeset
|
3469 |
|
272d1229cb49
test reconstruction of tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
95
diff
changeset
|
3470 def test_reconstruct(self): |
|
272d1229cb49
test reconstruction of tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
95
diff
changeset
|
3471 def CompareMainDicomTag(expected, instance, level, tag): |
|
272d1229cb49
test reconstruction of tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
95
diff
changeset
|
3472 self.assertEqual(expected, DoGet(_REMOTE, '/instances/%s/%s' % (instance, level))['MainDicomTags'][tag].strip()) |
|
272d1229cb49
test reconstruction of tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
95
diff
changeset
|
3473 |
|
272d1229cb49
test reconstruction of tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
95
diff
changeset
|
3474 a = UploadInstance(_REMOTE, 'DummyCT.dcm')['ID'] |
|
272d1229cb49
test reconstruction of tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
95
diff
changeset
|
3475 |
|
272d1229cb49
test reconstruction of tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
95
diff
changeset
|
3476 studies = DoGet(_REMOTE, '/studies/') |
|
272d1229cb49
test reconstruction of tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
95
diff
changeset
|
3477 self.assertEqual(1, len(DoGet(_REMOTE, '/patients/'))) |
|
272d1229cb49
test reconstruction of tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
95
diff
changeset
|
3478 self.assertEqual(1, len(studies)) |
|
272d1229cb49
test reconstruction of tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
95
diff
changeset
|
3479 self.assertEqual(1, len(DoGet(_REMOTE, '/series/'))) |
|
272d1229cb49
test reconstruction of tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
95
diff
changeset
|
3480 self.assertEqual(1, len(DoGet(_REMOTE, '/instances/'))) |
|
272d1229cb49
test reconstruction of tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
95
diff
changeset
|
3481 |
|
272d1229cb49
test reconstruction of tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
95
diff
changeset
|
3482 modified = DoPost(_REMOTE, '/studies/%s/modify' % studies[0], { |
|
272d1229cb49
test reconstruction of tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
95
diff
changeset
|
3483 "Replace" : { |
|
272d1229cb49
test reconstruction of tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
95
diff
changeset
|
3484 "StudyDescription" : "hello", |
|
272d1229cb49
test reconstruction of tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
95
diff
changeset
|
3485 "SeriesDescription" : "world", |
|
272d1229cb49
test reconstruction of tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
95
diff
changeset
|
3486 "SOPClassUID" : "test", |
|
272d1229cb49
test reconstruction of tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
95
diff
changeset
|
3487 "SOPInstanceUID" : "myid", |
|
272d1229cb49
test reconstruction of tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
95
diff
changeset
|
3488 }, |
| 119 | 3489 "Keep" : [ "StudyInstanceUID", "SeriesInstanceUID" ], |
| 3490 "Force" : True | |
|
96
272d1229cb49
test reconstruction of tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
95
diff
changeset
|
3491 }) |
|
272d1229cb49
test reconstruction of tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
95
diff
changeset
|
3492 |
|
272d1229cb49
test reconstruction of tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
95
diff
changeset
|
3493 instances = DoGet(_REMOTE, '/instances/') |
|
272d1229cb49
test reconstruction of tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
95
diff
changeset
|
3494 self.assertEqual(1, len(DoGet(_REMOTE, '/patients/'))) |
|
272d1229cb49
test reconstruction of tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
95
diff
changeset
|
3495 self.assertEqual(1, len(DoGet(_REMOTE, '/studies/'))) |
|
272d1229cb49
test reconstruction of tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
95
diff
changeset
|
3496 self.assertEqual(1, len(DoGet(_REMOTE, '/series/'))) |
|
272d1229cb49
test reconstruction of tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
95
diff
changeset
|
3497 self.assertEqual(2, len(instances)) |
|
272d1229cb49
test reconstruction of tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
95
diff
changeset
|
3498 |
|
272d1229cb49
test reconstruction of tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
95
diff
changeset
|
3499 b = instances[0] if instances[1] == a else instances[1] |
|
272d1229cb49
test reconstruction of tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
95
diff
changeset
|
3500 |
|
272d1229cb49
test reconstruction of tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
95
diff
changeset
|
3501 CompareMainDicomTag('Knee (R)', a, 'study', 'StudyDescription') |
|
272d1229cb49
test reconstruction of tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
95
diff
changeset
|
3502 CompareMainDicomTag('AX. FSE PD', a, 'series', 'SeriesDescription') |
|
272d1229cb49
test reconstruction of tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
95
diff
changeset
|
3503 CompareMainDicomTag('1.2.840.113619.2.176.2025.1499492.7040.1171286242.109', a, '', 'SOPInstanceUID') |
|
272d1229cb49
test reconstruction of tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
95
diff
changeset
|
3504 CompareMainDicomTag('myid', b, '', 'SOPInstanceUID') |
|
272d1229cb49
test reconstruction of tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
95
diff
changeset
|
3505 self.assertEqual('1.2.840.10008.5.1.4.1.1.4', DoGet(_REMOTE, '/instances/%s/metadata/SopClassUid' % a).strip()) |
|
272d1229cb49
test reconstruction of tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
95
diff
changeset
|
3506 self.assertEqual('test', DoGet(_REMOTE, '/instances/%s/metadata/SopClassUid' % b).strip()) |
|
272d1229cb49
test reconstruction of tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
95
diff
changeset
|
3507 |
|
272d1229cb49
test reconstruction of tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
95
diff
changeset
|
3508 DoPost(_REMOTE, '/instances/%s/reconstruct' % b, {}) |
|
272d1229cb49
test reconstruction of tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
95
diff
changeset
|
3509 |
|
272d1229cb49
test reconstruction of tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
95
diff
changeset
|
3510 CompareMainDicomTag('hello', a, 'study', 'StudyDescription') |
|
272d1229cb49
test reconstruction of tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
95
diff
changeset
|
3511 CompareMainDicomTag('world', a, 'series', 'SeriesDescription') |
|
272d1229cb49
test reconstruction of tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
95
diff
changeset
|
3512 CompareMainDicomTag('1.2.840.113619.2.176.2025.1499492.7040.1171286242.109', a, '', 'SOPInstanceUID') |
| 102 | 3513 |
| 104 | 3514 def test_httpClient_lua(self): |
| 3515 with open(GetDatabasePath('Lua/HttpClient.lua'), 'r') as f: | |
| 102 | 3516 result = DoPost(_REMOTE, '/tools/execute-script', f.read(), 'application/lua') |
| 3517 | |
| 3518 self.assertIn('OK', result) | |
|
107
fddb35f7289d
test_bitbucket_issue_44
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
104
diff
changeset
|
3519 |
|
fddb35f7289d
test_bitbucket_issue_44
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
104
diff
changeset
|
3520 |
|
fddb35f7289d
test_bitbucket_issue_44
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
104
diff
changeset
|
3521 def test_bitbucket_issue_44(self): |
| 319 | 3522 # https://bugs.orthanc-server.com/show_bug.cgi?id=44 |
|
107
fddb35f7289d
test_bitbucket_issue_44
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
104
diff
changeset
|
3523 UploadInstance(_REMOTE, 'Issue44/Monochrome1.dcm') |
|
fddb35f7289d
test_bitbucket_issue_44
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
104
diff
changeset
|
3524 UploadInstance(_REMOTE, 'Issue44/Monochrome2.dcm') |
|
fddb35f7289d
test_bitbucket_issue_44
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
104
diff
changeset
|
3525 |
|
fddb35f7289d
test_bitbucket_issue_44
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
104
diff
changeset
|
3526 # dcmcjpeg +ua +eb Monochrome1.dcm Monochrome1-Jpeg.dcm |
|
fddb35f7289d
test_bitbucket_issue_44
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
104
diff
changeset
|
3527 UploadInstance(_REMOTE, 'Issue44/Monochrome1-Jpeg.dcm') |
|
fddb35f7289d
test_bitbucket_issue_44
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
104
diff
changeset
|
3528 |
|
fddb35f7289d
test_bitbucket_issue_44
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
104
diff
changeset
|
3529 # dcmcjpeg +ua Monochrome1.dcm Monochrome1-JpegLS.dcm |
|
fddb35f7289d
test_bitbucket_issue_44
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
104
diff
changeset
|
3530 UploadInstance(_REMOTE, 'Issue44/Monochrome1-JpegLS.dcm') |
|
fddb35f7289d
test_bitbucket_issue_44
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
104
diff
changeset
|
3531 |
|
fddb35f7289d
test_bitbucket_issue_44
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
104
diff
changeset
|
3532 monochrome1 = 'bcdd600a-a6a9c522-5f0a6e84-8657c9f3-b76e59b7' |
|
fddb35f7289d
test_bitbucket_issue_44
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
104
diff
changeset
|
3533 monochrome1_jpeg = '9df82121-208a2da8-0038674a-3d7a773b-b7008cd2' |
|
fddb35f7289d
test_bitbucket_issue_44
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
104
diff
changeset
|
3534 monochrome1_jpegls = '0486d1a2-9165573f-b1976b20-e927b016-6b8d67ab' |
|
fddb35f7289d
test_bitbucket_issue_44
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
104
diff
changeset
|
3535 monochrome2 = 'f00947b7-f61f7164-c93414d1-c6fbda6a-9e92ed20' |
|
fddb35f7289d
test_bitbucket_issue_44
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
104
diff
changeset
|
3536 |
|
fddb35f7289d
test_bitbucket_issue_44
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
104
diff
changeset
|
3537 for i in [ monochrome1, monochrome1_jpeg, monochrome1_jpegls ]: |
|
fddb35f7289d
test_bitbucket_issue_44
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
104
diff
changeset
|
3538 im = GetImage(_REMOTE, '/instances/%s/preview' % i) |
|
fddb35f7289d
test_bitbucket_issue_44
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
104
diff
changeset
|
3539 self.assertEqual("L", im.mode) |
|
fddb35f7289d
test_bitbucket_issue_44
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
104
diff
changeset
|
3540 self.assertEqual(2010, im.size[0]) |
|
fddb35f7289d
test_bitbucket_issue_44
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
104
diff
changeset
|
3541 self.assertEqual(2446, im.size[1]) |
|
fddb35f7289d
test_bitbucket_issue_44
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
104
diff
changeset
|
3542 |
|
fddb35f7289d
test_bitbucket_issue_44
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
104
diff
changeset
|
3543 # This is the chest image, with MONOCHROME1. Raw background is |
|
fddb35f7289d
test_bitbucket_issue_44
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
104
diff
changeset
|
3544 # white (255), should be rendered as black (0) => invert |
|
fddb35f7289d
test_bitbucket_issue_44
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
104
diff
changeset
|
3545 if i == monochrome1_jpeg: |
|
fddb35f7289d
test_bitbucket_issue_44
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
104
diff
changeset
|
3546 # Add some tolerance because of JPEG destructive compression |
|
fddb35f7289d
test_bitbucket_issue_44
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
104
diff
changeset
|
3547 self.assertGreater(10, im.getpixel((0,0))) |
|
fddb35f7289d
test_bitbucket_issue_44
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
104
diff
changeset
|
3548 else: |
|
fddb35f7289d
test_bitbucket_issue_44
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
104
diff
changeset
|
3549 self.assertEqual(0, im.getpixel((0,0))) |
|
fddb35f7289d
test_bitbucket_issue_44
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
104
diff
changeset
|
3550 |
|
fddb35f7289d
test_bitbucket_issue_44
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
104
diff
changeset
|
3551 im = GetImage(_REMOTE, '/instances/%s/preview' % monochrome2) |
|
fddb35f7289d
test_bitbucket_issue_44
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
104
diff
changeset
|
3552 self.assertEqual("L", im.mode) |
|
fddb35f7289d
test_bitbucket_issue_44
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
104
diff
changeset
|
3553 self.assertEqual(1572, im.size[0]) |
|
fddb35f7289d
test_bitbucket_issue_44
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
104
diff
changeset
|
3554 self.assertEqual(2010, im.size[1]) |
|
fddb35f7289d
test_bitbucket_issue_44
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
104
diff
changeset
|
3555 |
|
fddb35f7289d
test_bitbucket_issue_44
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
104
diff
changeset
|
3556 # This is the key image, with MONOCHROME2. Raw background is |
|
fddb35f7289d
test_bitbucket_issue_44
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
104
diff
changeset
|
3557 # white (255), should be rendered as white (255) |
|
fddb35f7289d
test_bitbucket_issue_44
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
104
diff
changeset
|
3558 self.assertEqual(255, im.getpixel((0,0))) |
|
111
7005cdeeb704
test_bitbucket_issue_42
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
107
diff
changeset
|
3559 |
|
7005cdeeb704
test_bitbucket_issue_42
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
107
diff
changeset
|
3560 |
|
7005cdeeb704
test_bitbucket_issue_42
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
107
diff
changeset
|
3561 def test_bitbucket_issue_42(self): |
| 319 | 3562 # https://bugs.orthanc-server.com/show_bug.cgi?id=42 |
| 123 | 3563 # This test fails on DCMTK 3.6.0, but succeeds in DCMTK 3.6.1 snapshots and DCMTK 3.6.2 |
|
111
7005cdeeb704
test_bitbucket_issue_42
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
107
diff
changeset
|
3564 UploadInstance(_REMOTE, 'Issue42.dcm')['ID'] |
|
7005cdeeb704
test_bitbucket_issue_42
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
107
diff
changeset
|
3565 modified = DoPost(_REMOTE, |
|
7005cdeeb704
test_bitbucket_issue_42
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
107
diff
changeset
|
3566 '/patients/da128605-e040d0c4-310615d2-3475da63-df2d1ef4/modify', |
| 119 | 3567 '{"Replace":{"PatientID":"Hello","PatientName":"Sample patient name"},"Force":true}', |
|
111
7005cdeeb704
test_bitbucket_issue_42
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
107
diff
changeset
|
3568 'application/json') |
|
7005cdeeb704
test_bitbucket_issue_42
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
107
diff
changeset
|
3569 self.assertTrue('PatientID' in modified) |
|
113
3e5934363e76
test_rest_find_limitµ
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
112
diff
changeset
|
3570 |
|
3e5934363e76
test_rest_find_limitµ
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
112
diff
changeset
|
3571 |
|
3e5934363e76
test_rest_find_limitµ
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
112
diff
changeset
|
3572 def test_rest_find_limit(self): |
|
3e5934363e76
test_rest_find_limitµ
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parents:
112
diff
changeset
|
3573 # Check the "Since" and "Limit" parameters in URI "/tools/find" |
| 319 | 3574 # Related to issue 53: https://bugs.orthanc-server.com/show_bug.cgi?id=53 |
|
111
7005cdeeb704
test_bitbucket_issue_42
Sebastien Jodogne <s.jodogne@gmail.com>
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107
diff
changeset
|
3575 |
|
113
3e5934363e76
test_rest_find_limitµ
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112
diff
changeset
|
3576 # Upload 6 instances |
|
3e5934363e76
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Sebastien Jodogne <s.jodogne@gmail.com>
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112
diff
changeset
|
3577 brainix = [] |
|
3e5934363e76
test_rest_find_limitµ
Sebastien Jodogne <s.jodogne@gmail.com>
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112
diff
changeset
|
3578 knee = [] |
|
3e5934363e76
test_rest_find_limitµ
Sebastien Jodogne <s.jodogne@gmail.com>
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112
diff
changeset
|
3579 for i in range(2): |
|
3e5934363e76
test_rest_find_limitµ
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
112
diff
changeset
|
3580 brainix.append(UploadInstance(_REMOTE, 'Brainix/Flair/IM-0001-000%d.dcm' % (i + 1)) ['ID']) |
|
3e5934363e76
test_rest_find_limitµ
Sebastien Jodogne <s.jodogne@gmail.com>
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diff
changeset
|
3581 brainix.append(UploadInstance(_REMOTE, 'Brainix/Epi/IM-0001-000%d.dcm' % (i + 1)) ['ID']) |
|
3e5934363e76
test_rest_find_limitµ
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112
diff
changeset
|
3582 knee.append(UploadInstance(_REMOTE, 'Knee/T1/IM-0001-000%d.dcm' % (i + 1)) ['ID']) |
|
3e5934363e76
test_rest_find_limitµ
Sebastien Jodogne <s.jodogne@gmail.com>
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diff
changeset
|
3583 |
|
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diff
changeset
|
3584 # Check using BRAINIX |
|
3e5934363e76
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Sebastien Jodogne <s.jodogne@gmail.com>
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112
diff
changeset
|
3585 a = DoPost(_REMOTE, '/tools/find', { 'Level' : 'Instance', |
|
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test_rest_find_limitµ
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diff
changeset
|
3586 'Query' : { 'PatientName' : 'B*' }, |
|
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diff
changeset
|
3587 'Limit' : 10 }) |
|
3e5934363e76
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diff
changeset
|
3588 self.assertEqual(4, len(a)) |
|
3e5934363e76
test_rest_find_limitµ
Sebastien Jodogne <s.jodogne@gmail.com>
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112
diff
changeset
|
3589 |
|
3e5934363e76
test_rest_find_limitµ
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
112
diff
changeset
|
3590 a = DoPost(_REMOTE, '/tools/find', { 'Level' : 'Instance', |
|
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diff
changeset
|
3591 'Query' : { 'PatientName' : 'B*' }, |
|
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diff
changeset
|
3592 'Limit' : 4 }) |
|
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diff
changeset
|
3593 self.assertEqual(4, len(a)) |
|
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diff
changeset
|
3594 |
|
3e5934363e76
test_rest_find_limitµ
Sebastien Jodogne <s.jodogne@gmail.com>
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112
diff
changeset
|
3595 a = DoPost(_REMOTE, '/tools/find', { 'Level' : 'Instance', |
|
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test_rest_find_limitµ
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diff
changeset
|
3596 'Query' : { 'PatientName' : 'B*' }, |
|
3e5934363e76
test_rest_find_limitµ
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diff
changeset
|
3597 'Since' : 2, |
|
3e5934363e76
test_rest_find_limitµ
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
112
diff
changeset
|
3598 'Limit' : 4 }) |
|
3e5934363e76
test_rest_find_limitµ
Sebastien Jodogne <s.jodogne@gmail.com>
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112
diff
changeset
|
3599 self.assertEqual(2, len(a)) |
|
3e5934363e76
test_rest_find_limitµ
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
112
diff
changeset
|
3600 |
|
3e5934363e76
test_rest_find_limitµ
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
112
diff
changeset
|
3601 a = DoPost(_REMOTE, '/tools/find', { 'Level' : 'Instance', |
|
3e5934363e76
test_rest_find_limitµ
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
112
diff
changeset
|
3602 'Query' : { 'PatientName' : 'B*' }, |
|
3e5934363e76
test_rest_find_limitµ
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parents:
112
diff
changeset
|
3603 'Limit' : 3 }) |
|
3e5934363e76
test_rest_find_limitµ
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
112
diff
changeset
|
3604 self.assertEqual(3, len(a)) |
|
3e5934363e76
test_rest_find_limitµ
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
112
diff
changeset
|
3605 |
|
3e5934363e76
test_rest_find_limitµ
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
112
diff
changeset
|
3606 b = [] |
|
3e5934363e76
test_rest_find_limitµ
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
112
diff
changeset
|
3607 for i in range(4): |
|
3e5934363e76
test_rest_find_limitµ
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
112
diff
changeset
|
3608 a = DoPost(_REMOTE, '/tools/find', { 'Level' : 'Instance', |
|
3e5934363e76
test_rest_find_limitµ
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
112
diff
changeset
|
3609 'Query' : { 'PatientName' : 'B*' }, |
|
3e5934363e76
test_rest_find_limitµ
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
112
diff
changeset
|
3610 'Limit' : 1, |
|
3e5934363e76
test_rest_find_limitµ
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
112
diff
changeset
|
3611 'Since' : i }) |
|
3e5934363e76
test_rest_find_limitµ
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
112
diff
changeset
|
3612 self.assertEqual(1, len(a)) |
|
3e5934363e76
test_rest_find_limitµ
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
112
diff
changeset
|
3613 b.append(a[0]) |
|
3e5934363e76
test_rest_find_limitµ
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
112
diff
changeset
|
3614 |
|
3e5934363e76
test_rest_find_limitµ
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
112
diff
changeset
|
3615 # Check whether the two sets are equal through symmetric difference |
|
3e5934363e76
test_rest_find_limitµ
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parents:
112
diff
changeset
|
3616 self.assertEqual(0, len(set(b) ^ set(brainix))) |
|
3e5934363e76
test_rest_find_limitµ
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
112
diff
changeset
|
3617 |
|
3e5934363e76
test_rest_find_limitµ
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
112
diff
changeset
|
3618 # Check using KNEE |
|
3e5934363e76
test_rest_find_limitµ
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parents:
112
diff
changeset
|
3619 a = DoPost(_REMOTE, '/tools/find', { 'Level' : 'Instance', |
|
3e5934363e76
test_rest_find_limitµ
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
112
diff
changeset
|
3620 'Query' : { 'PatientName' : 'K*' }, |
|
3e5934363e76
test_rest_find_limitµ
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
112
diff
changeset
|
3621 'Limit' : 10 }) |
|
3e5934363e76
test_rest_find_limitµ
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
112
diff
changeset
|
3622 self.assertEqual(2, len(a)) |
|
3e5934363e76
test_rest_find_limitµ
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
112
diff
changeset
|
3623 |
|
3e5934363e76
test_rest_find_limitµ
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
112
diff
changeset
|
3624 a = DoPost(_REMOTE, '/tools/find', { 'Level' : 'Instance', |
|
3e5934363e76
test_rest_find_limitµ
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
112
diff
changeset
|
3625 'Query' : { 'PatientName' : 'K*' }, |
|
3e5934363e76
test_rest_find_limitµ
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
112
diff
changeset
|
3626 'Limit' : 2 }) |
|
3e5934363e76
test_rest_find_limitµ
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
112
diff
changeset
|
3627 self.assertEqual(2, len(a)) |
|
3e5934363e76
test_rest_find_limitµ
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
112
diff
changeset
|
3628 |
|
3e5934363e76
test_rest_find_limitµ
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
112
diff
changeset
|
3629 b = [] |
|
3e5934363e76
test_rest_find_limitµ
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
112
diff
changeset
|
3630 for i in range(2): |
|
3e5934363e76
test_rest_find_limitµ
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
112
diff
changeset
|
3631 a = DoPost(_REMOTE, '/tools/find', { 'Level' : 'Instance', |
|
3e5934363e76
test_rest_find_limitµ
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
112
diff
changeset
|
3632 'Query' : { 'PatientName' : 'K*' }, |
|
3e5934363e76
test_rest_find_limitµ
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
112
diff
changeset
|
3633 'Limit' : 1, |
|
3e5934363e76
test_rest_find_limitµ
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
112
diff
changeset
|
3634 'Since' : i }) |
|
3e5934363e76
test_rest_find_limitµ
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
112
diff
changeset
|
3635 self.assertEqual(1, len(a)) |
|
3e5934363e76
test_rest_find_limitµ
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
112
diff
changeset
|
3636 b.append(a[0]) |
|
3e5934363e76
test_rest_find_limitµ
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
112
diff
changeset
|
3637 |
|
3e5934363e76
test_rest_find_limitµ
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
112
diff
changeset
|
3638 self.assertEqual(0, len(set(b) ^ set(knee))) |
|
115
45ebfab035b7
test_bitbucket_issue_46
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
113
diff
changeset
|
3639 |
|
45ebfab035b7
test_bitbucket_issue_46
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
113
diff
changeset
|
3640 |
|
45ebfab035b7
test_bitbucket_issue_46
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
113
diff
changeset
|
3641 def test_bitbucket_issue_46(self): |
|
45ebfab035b7
test_bitbucket_issue_46
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parents:
113
diff
changeset
|
3642 # "PHI remaining after anonymization" |
| 319 | 3643 # https://bugs.orthanc-server.com/show_bug.cgi?id=46 |
|
115
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test_bitbucket_issue_46
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parents:
113
diff
changeset
|
3644 |
|
45ebfab035b7
test_bitbucket_issue_46
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
113
diff
changeset
|
3645 def GetAnonymizedTags(study, version): |
|
45ebfab035b7
test_bitbucket_issue_46
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
113
diff
changeset
|
3646 anonymized = DoPost(_REMOTE, '/studies/%s/anonymize' % study, |
|
45ebfab035b7
test_bitbucket_issue_46
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
113
diff
changeset
|
3647 { 'DicomVersion' : version }, |
|
45ebfab035b7
test_bitbucket_issue_46
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
113
diff
changeset
|
3648 'application/json') ['ID'] |
|
45ebfab035b7
test_bitbucket_issue_46
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
113
diff
changeset
|
3649 a = DoGet(_REMOTE, '/studies/%s/instances' % anonymized) |
|
45ebfab035b7
test_bitbucket_issue_46
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
113
diff
changeset
|
3650 self.assertEqual(1, len(a)) |
|
45ebfab035b7
test_bitbucket_issue_46
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
113
diff
changeset
|
3651 |
|
45ebfab035b7
test_bitbucket_issue_46
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
113
diff
changeset
|
3652 instance = a[0]['ID'] |
|
45ebfab035b7
test_bitbucket_issue_46
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
113
diff
changeset
|
3653 |
|
45ebfab035b7
test_bitbucket_issue_46
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
113
diff
changeset
|
3654 return (instance, DoGet(_REMOTE, '/instances/%s/tags' % instance)) |
|
45ebfab035b7
test_bitbucket_issue_46
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
113
diff
changeset
|
3655 |
|
45ebfab035b7
test_bitbucket_issue_46
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
113
diff
changeset
|
3656 UploadInstance(_REMOTE, 'Issue44/Monochrome1.dcm') |
|
45ebfab035b7
test_bitbucket_issue_46
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
113
diff
changeset
|
3657 origStudy = '6068a14b-d4df27af-9ec22145-538772d8-74f228ff' |
|
45ebfab035b7
test_bitbucket_issue_46
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
113
diff
changeset
|
3658 |
|
45ebfab035b7
test_bitbucket_issue_46
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
113
diff
changeset
|
3659 # Add the 0032,1033 (Requesting Service) and the 0010,1060 |
|
45ebfab035b7
test_bitbucket_issue_46
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
113
diff
changeset
|
3660 # (Patient's Mother's Birth Name) tags |
|
45ebfab035b7
test_bitbucket_issue_46
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
113
diff
changeset
|
3661 newStudy = DoPost(_REMOTE, '/studies/%s/modify' % origStudy, |
|
45ebfab035b7
test_bitbucket_issue_46
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
113
diff
changeset
|
3662 '{"Replace":{"0010,1060":"OSIMIS","0032,1033":"MOTHER"}}', |
|
45ebfab035b7
test_bitbucket_issue_46
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
113
diff
changeset
|
3663 'application/json')['ID'] |
|
45ebfab035b7
test_bitbucket_issue_46
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
113
diff
changeset
|
3664 |
|
45ebfab035b7
test_bitbucket_issue_46
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
113
diff
changeset
|
3665 # Use Table E.1-1 from PS 3.15-2008 |
|
45ebfab035b7
test_bitbucket_issue_46
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
113
diff
changeset
|
3666 # https://raw.githubusercontent.com/jodogne/dicom-specification/master/2008/08_15pu.pdf |
|
45ebfab035b7
test_bitbucket_issue_46
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
113
diff
changeset
|
3667 (instance, tags) = GetAnonymizedTags(newStudy, "2008") |
|
45ebfab035b7
test_bitbucket_issue_46
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
113
diff
changeset
|
3668 self.assertTrue('0032,1033' in tags) |
|
45ebfab035b7
test_bitbucket_issue_46
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
113
diff
changeset
|
3669 self.assertTrue('0010,1060' in tags) |
|
45ebfab035b7
test_bitbucket_issue_46
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
113
diff
changeset
|
3670 |
|
45ebfab035b7
test_bitbucket_issue_46
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
113
diff
changeset
|
3671 # Use Table E.1-1 from PS 3.15-2011 (only if Orthanc >= 1.2.1) |
|
45ebfab035b7
test_bitbucket_issue_46
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
113
diff
changeset
|
3672 # https://raw.githubusercontent.com/jodogne/dicom-specification/master/2008/08_15pu.pdf |
|
45ebfab035b7
test_bitbucket_issue_46
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
113
diff
changeset
|
3673 (instance, tags) = GetAnonymizedTags(newStudy, "2017c") |
|
45ebfab035b7
test_bitbucket_issue_46
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
113
diff
changeset
|
3674 self.assertFalse('0032,1033' in tags) |
|
45ebfab035b7
test_bitbucket_issue_46
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
113
diff
changeset
|
3675 self.assertFalse('0010,1060' in tags) |
|
45ebfab035b7
test_bitbucket_issue_46
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
113
diff
changeset
|
3676 |
|
45ebfab035b7
test_bitbucket_issue_46
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
113
diff
changeset
|
3677 t = {} |
|
45ebfab035b7
test_bitbucket_issue_46
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
113
diff
changeset
|
3678 for (key, value) in tags.iteritems(): |
|
45ebfab035b7
test_bitbucket_issue_46
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parents:
113
diff
changeset
|
3679 t[value['Name']] = value['Value'] |
|
45ebfab035b7
test_bitbucket_issue_46
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
113
diff
changeset
|
3680 |
|
45ebfab035b7
test_bitbucket_issue_46
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parents:
113
diff
changeset
|
3681 self.assertEqual('', t['StudyDate']) # Type 1 tag => cleared |
|
45ebfab035b7
test_bitbucket_issue_46
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parents:
113
diff
changeset
|
3682 self.assertEqual('', t['StudyTime']) # Type 1 tag => cleared |
|
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test_bitbucket_issue_46
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parents:
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diff
changeset
|
3683 self.assertEqual('', t['PatientSex']) # Type 1 tag => cleared |
|
45ebfab035b7
test_bitbucket_issue_46
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parents:
113
diff
changeset
|
3684 self.assertFalse('SeriesDate' in t) # Type 3 tag => null |
|
45ebfab035b7
test_bitbucket_issue_46
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
113
diff
changeset
|
3685 self.assertFalse('SeriesTime' in t) # Type 3 tag => null |
|
45ebfab035b7
test_bitbucket_issue_46
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
113
diff
changeset
|
3686 |
|
45ebfab035b7
test_bitbucket_issue_46
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parents:
113
diff
changeset
|
3687 with tempfile.NamedTemporaryFile(delete = True) as f: |
|
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test_bitbucket_issue_46
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parents:
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diff
changeset
|
3688 # Run "dciodvfy" on the anonymized file to be sure it is still valid |
|
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test_bitbucket_issue_46
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diff
changeset
|
3689 f.write(DoGet(_REMOTE, '/instances/%s/file' % instance)) |
|
45ebfab035b7
test_bitbucket_issue_46
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diff
changeset
|
3690 f.flush() |
|
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diff
changeset
|
3691 subprocess.check_output([ FindExecutable('dciodvfy'), f.name ], |
|
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test_bitbucket_issue_46
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parents:
113
diff
changeset
|
3692 stderr = subprocess.STDOUT).split('\n') |
|
118
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test_bitbucket_issue_55
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
117
diff
changeset
|
3693 |
|
a954c535fef6
test_bitbucket_issue_55
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parents:
117
diff
changeset
|
3694 |
|
a954c535fef6
test_bitbucket_issue_55
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parents:
117
diff
changeset
|
3695 def test_bitbucket_issue_55(self): |
|
a954c535fef6
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diff
changeset
|
3696 def Run(modify, query): |
|
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diff
changeset
|
3697 self.assertEqual(1, len(DoGet(_REMOTE, '/instances'))) |
|
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test_bitbucket_issue_55
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diff
changeset
|
3698 |
|
a954c535fef6
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diff
changeset
|
3699 operation = 'modify' if modify else 'anonymize' |
|
a954c535fef6
test_bitbucket_issue_55
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diff
changeset
|
3700 |
|
a954c535fef6
test_bitbucket_issue_55
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117
diff
changeset
|
3701 self.assertRaises(Exception, lambda: DoPost( |
|
a954c535fef6
test_bitbucket_issue_55
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diff
changeset
|
3702 _REMOTE, '/studies/%s/%s' % (study, operation), query)) |
|
a954c535fef6
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diff
changeset
|
3703 self.assertEqual(1, len(DoGet(_REMOTE, '/instances'))) |
|
a954c535fef6
test_bitbucket_issue_55
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
changeset
|
3704 |
|
a954c535fef6
test_bitbucket_issue_55
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parents:
117
diff
changeset
|
3705 query["Force"] = True |
|
a954c535fef6
test_bitbucket_issue_55
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
117
diff
changeset
|
3706 a = DoPost(_REMOTE, '/studies/%s/%s' % (study, operation), query)['Path'] |
|
a954c535fef6
test_bitbucket_issue_55
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
117
diff
changeset
|
3707 self.assertEqual(2, len(DoGet(_REMOTE, '/instances'))) |
|
a954c535fef6
test_bitbucket_issue_55
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
117
diff
changeset
|
3708 DoDelete(_REMOTE, a) |
|
a954c535fef6
test_bitbucket_issue_55
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
117
diff
changeset
|
3709 |
|
a954c535fef6
test_bitbucket_issue_55
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
117
diff
changeset
|
3710 self.assertEqual(1, len(DoGet(_REMOTE, '/instances'))) |
|
a954c535fef6
test_bitbucket_issue_55
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
117
diff
changeset
|
3711 |
|
a954c535fef6
test_bitbucket_issue_55
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
117
diff
changeset
|
3712 UploadInstance(_REMOTE, 'DummyCT.dcm') |
|
a954c535fef6
test_bitbucket_issue_55
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
117
diff
changeset
|
3713 study = 'b9c08539-26f93bde-c81ab0d7-bffaf2cb-a4d0bdd0' |
|
a954c535fef6
test_bitbucket_issue_55
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
117
diff
changeset
|
3714 |
|
a954c535fef6
test_bitbucket_issue_55
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
117
diff
changeset
|
3715 Run(True, { "Replace" : { "StudyInstanceUID" : "world" } }) |
|
a954c535fef6
test_bitbucket_issue_55
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
117
diff
changeset
|
3716 Run(True, { "Replace" : { "SeriesInstanceUID" : "world" } }) |
|
a954c535fef6
test_bitbucket_issue_55
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
117
diff
changeset
|
3717 Run(True, { "Replace" : { "SOPInstanceUID" : "world" } }) |
|
a954c535fef6
test_bitbucket_issue_55
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
117
diff
changeset
|
3718 |
|
a954c535fef6
test_bitbucket_issue_55
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
117
diff
changeset
|
3719 Run(False, { "Keep" : [ "StudyInstanceUID" ]}) |
|
a954c535fef6
test_bitbucket_issue_55
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
117
diff
changeset
|
3720 Run(False, { "Keep" : [ "SeriesInstanceUID" ]}) |
|
a954c535fef6
test_bitbucket_issue_55
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
117
diff
changeset
|
3721 Run(False, { "Keep" : [ "SOPInstanceUID" ]}) |
|
a954c535fef6
test_bitbucket_issue_55
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
117
diff
changeset
|
3722 |
|
a954c535fef6
test_bitbucket_issue_55
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
117
diff
changeset
|
3723 Run(False, { "Replace" : { "StudyInstanceUID" : "world" } }) |
|
a954c535fef6
test_bitbucket_issue_55
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
117
diff
changeset
|
3724 Run(False, { "Replace" : { "SeriesInstanceUID" : "world" } }) |
|
a954c535fef6
test_bitbucket_issue_55
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
117
diff
changeset
|
3725 Run(False, { "Replace" : { "SOPInstanceUID" : "world" } }) |
|
a954c535fef6
test_bitbucket_issue_55
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
117
diff
changeset
|
3726 |
|
120
fce08afe6b2d
test_bitbucket_issue_56
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
119
diff
changeset
|
3727 |
|
fce08afe6b2d
test_bitbucket_issue_56
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
119
diff
changeset
|
3728 def test_bitbucket_issue_56(self): |
|
fce08afe6b2d
test_bitbucket_issue_56
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
119
diff
changeset
|
3729 # Case-insensitive matching over accents. This test assumes |
|
fce08afe6b2d
test_bitbucket_issue_56
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
119
diff
changeset
|
3730 # that the "CaseSensitivePN" configuration option of Orthanc |
|
fce08afe6b2d
test_bitbucket_issue_56
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
119
diff
changeset
|
3731 # is set to "false" (default value). |
| 319 | 3732 # https://bugs.orthanc-server.com/show_bug.cgi?id=56 |
|
120
fce08afe6b2d
test_bitbucket_issue_56
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
119
diff
changeset
|
3733 |
|
fce08afe6b2d
test_bitbucket_issue_56
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
119
diff
changeset
|
3734 def Check(name, expected, expectedSensitive): |
|
fce08afe6b2d
test_bitbucket_issue_56
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
119
diff
changeset
|
3735 a = CallFindScu([ '-k', '0008,0005=ISO_IR 192', # Use UTF-8 |
|
fce08afe6b2d
test_bitbucket_issue_56
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
119
diff
changeset
|
3736 '-k', '0008,0052=PATIENT', |
|
fce08afe6b2d
test_bitbucket_issue_56
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
119
diff
changeset
|
3737 '-k', 'PatientName=%s' % name ]) |
|
fce08afe6b2d
test_bitbucket_issue_56
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
119
diff
changeset
|
3738 patientNames = re.findall('\(0010,0010\).*?\[(.*?)\]', a) |
|
fce08afe6b2d
test_bitbucket_issue_56
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
119
diff
changeset
|
3739 self.assertEqual(expected, len(patientNames)) |
|
fce08afe6b2d
test_bitbucket_issue_56
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
119
diff
changeset
|
3740 |
|
fce08afe6b2d
test_bitbucket_issue_56
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
119
diff
changeset
|
3741 a = DoPost(_REMOTE, '/tools/find', { 'Level' : 'Patient', |
|
fce08afe6b2d
test_bitbucket_issue_56
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
119
diff
changeset
|
3742 'CaseSensitive' : False, |
|
fce08afe6b2d
test_bitbucket_issue_56
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
119
diff
changeset
|
3743 'Query' : { 'PatientName' : name }}) |
|
fce08afe6b2d
test_bitbucket_issue_56
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
119
diff
changeset
|
3744 self.assertEqual(expected, len(a)) |
|
fce08afe6b2d
test_bitbucket_issue_56
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
119
diff
changeset
|
3745 |
|
fce08afe6b2d
test_bitbucket_issue_56
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
119
diff
changeset
|
3746 a = DoPost(_REMOTE, '/tools/find', { 'Level' : 'Patient', |
|
fce08afe6b2d
test_bitbucket_issue_56
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
119
diff
changeset
|
3747 'CaseSensitive' : True, |
|
fce08afe6b2d
test_bitbucket_issue_56
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
119
diff
changeset
|
3748 'Query' : { 'PatientName' : name }}) |
|
fce08afe6b2d
test_bitbucket_issue_56
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
119
diff
changeset
|
3749 self.assertEqual(expectedSensitive, len(a)) |
|
fce08afe6b2d
test_bitbucket_issue_56
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
119
diff
changeset
|
3750 |
|
fce08afe6b2d
test_bitbucket_issue_56
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
119
diff
changeset
|
3751 UploadInstance(_REMOTE, 'Encodings/Lena-latin1.dcm') |
|
fce08afe6b2d
test_bitbucket_issue_56
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
119
diff
changeset
|
3752 |
|
fce08afe6b2d
test_bitbucket_issue_56
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
119
diff
changeset
|
3753 # WildcardConstraint |
|
fce08afe6b2d
test_bitbucket_issue_56
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
119
diff
changeset
|
3754 Check('TeSt*', 1, 0) |
|
fce08afe6b2d
test_bitbucket_issue_56
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
119
diff
changeset
|
3755 Check('TeSt-a*', 0, 0) |
|
fce08afe6b2d
test_bitbucket_issue_56
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
119
diff
changeset
|
3756 Check('TeSt-É*', 1, 0) |
|
fce08afe6b2d
test_bitbucket_issue_56
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
119
diff
changeset
|
3757 Check('TeSt-é*', 1, 0) |
|
fce08afe6b2d
test_bitbucket_issue_56
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
119
diff
changeset
|
3758 Check('Test-é*', 1, 1) |
|
fce08afe6b2d
test_bitbucket_issue_56
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
119
diff
changeset
|
3759 |
|
fce08afe6b2d
test_bitbucket_issue_56
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
119
diff
changeset
|
3760 # ListConstraint |
|
fce08afe6b2d
test_bitbucket_issue_56
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
119
diff
changeset
|
3761 Check('Test-éüäöò\\nope', 1, 1) |
|
fce08afe6b2d
test_bitbucket_issue_56
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
119
diff
changeset
|
3762 Check('Test-ÉÜÄÖÒ\\nope', 1, 0) |
|
fce08afe6b2d
test_bitbucket_issue_56
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
119
diff
changeset
|
3763 |
|
fce08afe6b2d
test_bitbucket_issue_56
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
119
diff
changeset
|
3764 # ValueConstraint |
|
fce08afe6b2d
test_bitbucket_issue_56
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
119
diff
changeset
|
3765 Check('Test-éüäöò', 1, 1) |
|
fce08afe6b2d
test_bitbucket_issue_56
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
119
diff
changeset
|
3766 Check('Test-ÉÜÄÖÒ', 1, 0) |
|
fce08afe6b2d
test_bitbucket_issue_56
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
119
diff
changeset
|
3767 |
| 125 | 3768 |
| 3769 def test_gbk_alias(self): | |
| 3770 # https://groups.google.com/d/msg/orthanc-users/WMM8LMbjpUc/02-1f_yFCgAJ | |
| 3771 # This test fails on Orthanc <= 1.3.0 | |
| 3772 i = UploadInstance(_REMOTE, '2017-09-19-GBK-Tumashu.dcm')['ID'] | |
| 3773 tags = DoGet(_REMOTE, '/instances/%s/tags?simplify' % i) | |
| 3774 self.assertEqual(tags['PatientName'], u'徐浩凯') | |
| 3775 self.assertEqual(tags['InstitutionName'], u'灌云县疾病预防控制中心') | |
| 126 | 3776 |
| 3777 | |
| 3778 def test_long_tag(self): | |
| 3779 i = UploadInstance(_REMOTE, 'DummyCTWithLongTag.dcm')['ID'] | |
| 3780 series = 'f2635388-f01d497a-15f7c06b-ad7dba06-c4c599fe' | |
| 3781 | |
| 3782 tags = DoGet(_REMOTE, '/instances/%s/tags' % i) | |
| 3783 self.assertTrue('0018,1020' in tags) | |
| 3784 self.assertEqual('SoftwareVersions', tags['0018,1020']['Name']) | |
| 3785 self.assertEqual('TooLong', tags['0018,1020']['Type']) | |
| 3786 self.assertEqual(None, tags['0018,1020']['Value']) | |
| 3787 | |
| 3788 tags = DoGet(_REMOTE, '/instances/%s/tags?ignore-length=0018-1020' % i) | |
| 3789 self.assertTrue('0018,1020' in tags) | |
| 3790 self.assertEqual('SoftwareVersions', tags['0018,1020']['Name']) | |
| 3791 self.assertEqual('String', tags['0018,1020']['Type']) | |
| 3792 self.assertTrue(tags['0018,1020']['Value'].startswith('Lorem ipsum dolor sit amet')) | |
| 3793 | |
| 3794 tags = DoGet(_REMOTE, '/instances/%s/tags?simplify' % i) | |
| 3795 self.assertTrue('SoftwareVersions' in tags) | |
| 3796 self.assertEqual(None, tags['SoftwareVersions']) | |
| 3797 self.assertTrue('HeartRate' in tags) | |
| 3798 self.assertEqual(474, int(tags['HeartRate'])) | |
| 3799 | |
| 3800 tags = DoGet(_REMOTE, '/instances/%s/simplified-tags' % i) | |
| 3801 self.assertTrue('SoftwareVersions' in tags) | |
| 3802 self.assertEqual(None, tags['SoftwareVersions']) | |
| 3803 | |
| 3804 tags = DoGet(_REMOTE, '/instances/%s/tags?simplify&ignore-length=0018-1020' % i) | |
| 3805 self.assertTrue('SoftwareVersions' in tags) | |
| 3806 self.assertTrue(tags['SoftwareVersions'].startswith('Lorem ipsum dolor sit amet')) | |
| 3807 | |
| 3808 tags = DoGet(_REMOTE, '/instances/%s/tags?simplify&ignore-length=SoftwareVersions' % i) | |
| 3809 self.assertTrue('SoftwareVersions' in tags) | |
| 3810 self.assertTrue(tags['SoftwareVersions'].startswith('Lorem ipsum dolor sit amet')) | |
| 3811 | |
| 3812 tags = DoGet(_REMOTE, '/series/%s/instances-tags' % series) | |
| 3813 self.assertEqual(1, len(tags)) | |
| 3814 self.assertTrue(i in tags.keys()) | |
| 3815 self.assertTrue('0018,1020' in tags[i]) | |
| 3816 self.assertEqual('TooLong', tags[i]['0018,1020']['Type']) | |
| 3817 | |
| 3818 tags = DoGet(_REMOTE, '/series/%s/instances-tags?ignore-length=SoftwareVersions' % series) | |
| 3819 self.assertEqual(1, len(tags)) | |
| 3820 self.assertTrue(i in tags.keys()) | |
| 3821 self.assertTrue('0018,1020' in tags[i]) | |
| 3822 self.assertEqual('String', tags[i]['0018,1020']['Type']) | |
| 3823 self.assertTrue(tags[i]['0018,1020']['Value'].startswith('Lorem ipsum dolor sit amet')) | |
| 3824 | |
|
127
1eea4d3a1ba9
test_extended_media
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
126
diff
changeset
|
3825 |
|
1eea4d3a1ba9
test_extended_media
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
126
diff
changeset
|
3826 def test_extended_media(self): |
|
1eea4d3a1ba9
test_extended_media
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
126
diff
changeset
|
3827 UploadInstance(_REMOTE, 'Knee/T1/IM-0001-0001.dcm') |
|
1eea4d3a1ba9
test_extended_media
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
126
diff
changeset
|
3828 |
|
1eea4d3a1ba9
test_extended_media
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
126
diff
changeset
|
3829 z = GetArchive(_REMOTE, '/patients/%s/media?extended' % DoGet(_REMOTE, '/patients')[0]) |
|
1eea4d3a1ba9
test_extended_media
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
126
diff
changeset
|
3830 self.assertEqual(2, len(z.namelist())) |
|
1eea4d3a1ba9
test_extended_media
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
126
diff
changeset
|
3831 self.assertTrue('IMAGES/IM0' in z.namelist()) |
|
1eea4d3a1ba9
test_extended_media
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
126
diff
changeset
|
3832 self.assertTrue('DICOMDIR' in z.namelist()) |
|
1eea4d3a1ba9
test_extended_media
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
126
diff
changeset
|
3833 |
|
1eea4d3a1ba9
test_extended_media
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
126
diff
changeset
|
3834 try: |
|
1eea4d3a1ba9
test_extended_media
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
126
diff
changeset
|
3835 os.remove('/tmp/DICOMDIR') |
|
1eea4d3a1ba9
test_extended_media
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
126
diff
changeset
|
3836 except: |
|
1eea4d3a1ba9
test_extended_media
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
126
diff
changeset
|
3837 # The file does not exist |
|
1eea4d3a1ba9
test_extended_media
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
126
diff
changeset
|
3838 pass |
|
1eea4d3a1ba9
test_extended_media
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
126
diff
changeset
|
3839 |
|
1eea4d3a1ba9
test_extended_media
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
126
diff
changeset
|
3840 z.extract('DICOMDIR', '/tmp') |
|
1eea4d3a1ba9
test_extended_media
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
126
diff
changeset
|
3841 a = subprocess.check_output([ FindExecutable('dciodvfy'), '/tmp/DICOMDIR' ], |
|
1eea4d3a1ba9
test_extended_media
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
126
diff
changeset
|
3842 stderr = subprocess.STDOUT).split('\n') |
|
1eea4d3a1ba9
test_extended_media
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
126
diff
changeset
|
3843 self.assertEqual(5, len(a)) |
|
1eea4d3a1ba9
test_extended_media
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
126
diff
changeset
|
3844 self.assertTrue(a[0].startswith('Warning')) |
|
1eea4d3a1ba9
test_extended_media
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
126
diff
changeset
|
3845 self.assertEqual('BasicDirectory', a[1]) |
|
1eea4d3a1ba9
test_extended_media
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
126
diff
changeset
|
3846 self.assertTrue('not present in standard DICOM IOD' in a[2]) |
|
1eea4d3a1ba9
test_extended_media
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
126
diff
changeset
|
3847 self.assertTrue('not present in standard DICOM IOD' in a[3]) |
|
1eea4d3a1ba9
test_extended_media
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
126
diff
changeset
|
3848 self.assertEqual('', a[4]) |
|
1eea4d3a1ba9
test_extended_media
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
126
diff
changeset
|
3849 |
|
1eea4d3a1ba9
test_extended_media
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
126
diff
changeset
|
3850 a = subprocess.check_output([ FindExecutable('dcentvfy'), '/tmp/DICOMDIR' ], |
|
1eea4d3a1ba9
test_extended_media
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
126
diff
changeset
|
3851 stderr = subprocess.STDOUT).split('\n') |
|
1eea4d3a1ba9
test_extended_media
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
126
diff
changeset
|
3852 self.assertEqual(1, len(a)) |
|
1eea4d3a1ba9
test_extended_media
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
126
diff
changeset
|
3853 self.assertEqual('', a[0]) |
|
1eea4d3a1ba9
test_extended_media
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
126
diff
changeset
|
3854 |
|
1eea4d3a1ba9
test_extended_media
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
126
diff
changeset
|
3855 a = subprocess.check_output([ FindExecutable('dcm2xml'), '/tmp/DICOMDIR' ]) |
|
1eea4d3a1ba9
test_extended_media
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
126
diff
changeset
|
3856 self.assertTrue(re.search('1.3.46.670589.11.17521.5.0.3124.2008081908590448738', a) != None) |
|
1eea4d3a1ba9
test_extended_media
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
126
diff
changeset
|
3857 |
|
1eea4d3a1ba9
test_extended_media
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
126
diff
changeset
|
3858 # Check the presence of the series description (extended tag) |
|
1eea4d3a1ba9
test_extended_media
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
126
diff
changeset
|
3859 self.assertTrue(re.search('T1W_aTSE', a) != None) |
|
1eea4d3a1ba9
test_extended_media
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
126
diff
changeset
|
3860 |
|
1eea4d3a1ba9
test_extended_media
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
126
diff
changeset
|
3861 os.remove('/tmp/DICOMDIR') |
|
1eea4d3a1ba9
test_extended_media
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
126
diff
changeset
|
3862 |
|
1eea4d3a1ba9
test_extended_media
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
126
diff
changeset
|
3863 |
|
132
149144d854bb
Orthanc.test_anonymize_relationships_1/2
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
130
diff
changeset
|
3864 def test_anonymize_relationships_1(self): |
|
133
f0d4c4707e64
test_anonymize_relationships_3
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
132
diff
changeset
|
3865 UploadInstance(_REMOTE, 'Knee/T1/IM-0001-0001.dcm') |
|
f0d4c4707e64
test_anonymize_relationships_3
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
132
diff
changeset
|
3866 UploadInstance(_REMOTE, 'Knee/T1/IM-0001-0002.dcm') |
|
132
149144d854bb
Orthanc.test_anonymize_relationships_1/2
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
130
diff
changeset
|
3867 study = '0a9b3153-2512774b-2d9580de-1fc3dcf6-3bd83918' |
|
149144d854bb
Orthanc.test_anonymize_relationships_1/2
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
130
diff
changeset
|
3868 |
|
149144d854bb
Orthanc.test_anonymize_relationships_1/2
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
130
diff
changeset
|
3869 anonymized = DoPost(_REMOTE, '/studies/%s/anonymize' % study, |
|
149144d854bb
Orthanc.test_anonymize_relationships_1/2
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
130
diff
changeset
|
3870 '{}', |
|
149144d854bb
Orthanc.test_anonymize_relationships_1/2
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
130
diff
changeset
|
3871 'application/json')['ID'] |
|
149144d854bb
Orthanc.test_anonymize_relationships_1/2
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
130
diff
changeset
|
3872 |
|
149144d854bb
Orthanc.test_anonymize_relationships_1/2
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
130
diff
changeset
|
3873 a = DoGet(_REMOTE, '/studies/%s/instances' % study) |
|
149144d854bb
Orthanc.test_anonymize_relationships_1/2
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
130
diff
changeset
|
3874 self.assertEqual(2, len(a)) |
|
149144d854bb
Orthanc.test_anonymize_relationships_1/2
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
130
diff
changeset
|
3875 a1 = a[0]['ID'] |
|
149144d854bb
Orthanc.test_anonymize_relationships_1/2
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
130
diff
changeset
|
3876 a2 = a[1]['ID'] |
|
149144d854bb
Orthanc.test_anonymize_relationships_1/2
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
130
diff
changeset
|
3877 |
|
149144d854bb
Orthanc.test_anonymize_relationships_1/2
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
130
diff
changeset
|
3878 b = DoGet(_REMOTE, '/studies/%s/instances' % anonymized) |
|
149144d854bb
Orthanc.test_anonymize_relationships_1/2
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
130
diff
changeset
|
3879 self.assertEqual(2, len(b)) |
|
149144d854bb
Orthanc.test_anonymize_relationships_1/2
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
130
diff
changeset
|
3880 b1 = b[0]['ID'] |
|
149144d854bb
Orthanc.test_anonymize_relationships_1/2
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
130
diff
changeset
|
3881 b2 = b[1]['ID'] |
|
149144d854bb
Orthanc.test_anonymize_relationships_1/2
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
130
diff
changeset
|
3882 |
|
149144d854bb
Orthanc.test_anonymize_relationships_1/2
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
130
diff
changeset
|
3883 SEQUENCE = '/instances/%s/content/ReferencedImageSequence' |
|
149144d854bb
Orthanc.test_anonymize_relationships_1/2
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
130
diff
changeset
|
3884 SOP = '/instances/%s/content/ReferencedImageSequence/%d/ReferencedSOPInstanceUID' |
|
149144d854bb
Orthanc.test_anonymize_relationships_1/2
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
130
diff
changeset
|
3885 CLASS = '/instances/%s/content/ReferencedImageSequence/%d/ReferencedSOPClassUID' |
|
149144d854bb
Orthanc.test_anonymize_relationships_1/2
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
130
diff
changeset
|
3886 FRAME = '/instances/%s/content/FrameOfReferenceUID' |
|
149144d854bb
Orthanc.test_anonymize_relationships_1/2
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
130
diff
changeset
|
3887 |
|
149144d854bb
Orthanc.test_anonymize_relationships_1/2
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
130
diff
changeset
|
3888 self.assertEqual(DoGet(_REMOTE, FRAME % a1), |
|
149144d854bb
Orthanc.test_anonymize_relationships_1/2
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
130
diff
changeset
|
3889 DoGet(_REMOTE, FRAME % a2)) |
|
149144d854bb
Orthanc.test_anonymize_relationships_1/2
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
130
diff
changeset
|
3890 self.assertEqual(DoGet(_REMOTE, FRAME % b1), |
|
149144d854bb
Orthanc.test_anonymize_relationships_1/2
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
130
diff
changeset
|
3891 DoGet(_REMOTE, FRAME % b2)) |
|
149144d854bb
Orthanc.test_anonymize_relationships_1/2
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
130
diff
changeset
|
3892 self.assertNotEqual(DoGet(_REMOTE, FRAME % a1), |
|
149144d854bb
Orthanc.test_anonymize_relationships_1/2
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
130
diff
changeset
|
3893 DoGet(_REMOTE, FRAME % b1)) |
|
149144d854bb
Orthanc.test_anonymize_relationships_1/2
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
130
diff
changeset
|
3894 self.assertNotEqual(DoGet(_REMOTE, FRAME % a2), |
|
149144d854bb
Orthanc.test_anonymize_relationships_1/2
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
130
diff
changeset
|
3895 DoGet(_REMOTE, FRAME % b2)) |
|
149144d854bb
Orthanc.test_anonymize_relationships_1/2
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
130
diff
changeset
|
3896 |
|
149144d854bb
Orthanc.test_anonymize_relationships_1/2
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
130
diff
changeset
|
3897 self.assertEqual(3, len(DoGet(_REMOTE, SEQUENCE % a1))) |
|
149144d854bb
Orthanc.test_anonymize_relationships_1/2
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
130
diff
changeset
|
3898 self.assertEqual(3, len(DoGet(_REMOTE, SEQUENCE % a2))) |
|
149144d854bb
Orthanc.test_anonymize_relationships_1/2
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
130
diff
changeset
|
3899 self.assertEqual(3, len(DoGet(_REMOTE, SEQUENCE % b1))) |
|
149144d854bb
Orthanc.test_anonymize_relationships_1/2
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
130
diff
changeset
|
3900 self.assertEqual(3, len(DoGet(_REMOTE, SEQUENCE % b2))) |
|
149144d854bb
Orthanc.test_anonymize_relationships_1/2
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
130
diff
changeset
|
3901 |
|
149144d854bb
Orthanc.test_anonymize_relationships_1/2
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
130
diff
changeset
|
3902 for i in range(3): |
|
149144d854bb
Orthanc.test_anonymize_relationships_1/2
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
130
diff
changeset
|
3903 self.assertEqual(DoGet(_REMOTE, SOP % (a1, i)), |
|
149144d854bb
Orthanc.test_anonymize_relationships_1/2
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
130
diff
changeset
|
3904 DoGet(_REMOTE, SOP % (a2, i))) |
|
149144d854bb
Orthanc.test_anonymize_relationships_1/2
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
130
diff
changeset
|
3905 self.assertEqual(DoGet(_REMOTE, SOP % (b1, i)), |
|
149144d854bb
Orthanc.test_anonymize_relationships_1/2
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
130
diff
changeset
|
3906 DoGet(_REMOTE, SOP % (b2, i))) |
|
149144d854bb
Orthanc.test_anonymize_relationships_1/2
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
130
diff
changeset
|
3907 self.assertNotEqual(DoGet(_REMOTE, SOP % (a1, i)), |
|
149144d854bb
Orthanc.test_anonymize_relationships_1/2
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
130
diff
changeset
|
3908 DoGet(_REMOTE, SOP % (b1, i))) |
|
149144d854bb
Orthanc.test_anonymize_relationships_1/2
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
130
diff
changeset
|
3909 self.assertNotEqual(DoGet(_REMOTE, SOP % (a2, i)), |
|
149144d854bb
Orthanc.test_anonymize_relationships_1/2
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
130
diff
changeset
|
3910 DoGet(_REMOTE, SOP % (b2, i))) |
|
149144d854bb
Orthanc.test_anonymize_relationships_1/2
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
130
diff
changeset
|
3911 self.assertEqual(DoGet(_REMOTE, CLASS % (a1, i)), |
|
149144d854bb
Orthanc.test_anonymize_relationships_1/2
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
130
diff
changeset
|
3912 DoGet(_REMOTE, CLASS % (b1, i))) |
|
149144d854bb
Orthanc.test_anonymize_relationships_1/2
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
130
diff
changeset
|
3913 self.assertEqual(DoGet(_REMOTE, CLASS % (a2, i)), |
|
149144d854bb
Orthanc.test_anonymize_relationships_1/2
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
130
diff
changeset
|
3914 DoGet(_REMOTE, CLASS % (b2, i))) |
|
149144d854bb
Orthanc.test_anonymize_relationships_1/2
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
130
diff
changeset
|
3915 |
|
149144d854bb
Orthanc.test_anonymize_relationships_1/2
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
130
diff
changeset
|
3916 |
|
149144d854bb
Orthanc.test_anonymize_relationships_1/2
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
130
diff
changeset
|
3917 def test_anonymize_relationships_2(self): |
|
133
f0d4c4707e64
test_anonymize_relationships_3
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
132
diff
changeset
|
3918 UploadInstance(_REMOTE, 'Comunix/Ct/IM-0001-0001.dcm') |
|
f0d4c4707e64
test_anonymize_relationships_3
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
132
diff
changeset
|
3919 UploadInstance(_REMOTE, 'Comunix/Ct/IM-0001-0002.dcm') |
|
132
149144d854bb
Orthanc.test_anonymize_relationships_1/2
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
130
diff
changeset
|
3920 study = '6c65289b-db2fcb71-7eaf73f4-8e12470c-a4d6d7cf' |
|
149144d854bb
Orthanc.test_anonymize_relationships_1/2
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
130
diff
changeset
|
3921 |
|
149144d854bb
Orthanc.test_anonymize_relationships_1/2
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
130
diff
changeset
|
3922 anonymized = DoPost(_REMOTE, '/studies/%s/anonymize' % study, |
|
149144d854bb
Orthanc.test_anonymize_relationships_1/2
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
130
diff
changeset
|
3923 '{}', |
|
149144d854bb
Orthanc.test_anonymize_relationships_1/2
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
130
diff
changeset
|
3924 'application/json')['ID'] |
|
149144d854bb
Orthanc.test_anonymize_relationships_1/2
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
130
diff
changeset
|
3925 |
|
149144d854bb
Orthanc.test_anonymize_relationships_1/2
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
130
diff
changeset
|
3926 a = DoGet(_REMOTE, '/studies/%s/instances' % study) |
|
149144d854bb
Orthanc.test_anonymize_relationships_1/2
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
130
diff
changeset
|
3927 self.assertEqual(2, len(a)) |
|
149144d854bb
Orthanc.test_anonymize_relationships_1/2
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
130
diff
changeset
|
3928 a1 = a[0]['ID'] |
|
149144d854bb
Orthanc.test_anonymize_relationships_1/2
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
130
diff
changeset
|
3929 a2 = a[1]['ID'] |
|
149144d854bb
Orthanc.test_anonymize_relationships_1/2
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
130
diff
changeset
|
3930 |
|
149144d854bb
Orthanc.test_anonymize_relationships_1/2
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
130
diff
changeset
|
3931 b = DoGet(_REMOTE, '/studies/%s/instances' % anonymized) |
|
149144d854bb
Orthanc.test_anonymize_relationships_1/2
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
130
diff
changeset
|
3932 self.assertEqual(2, len(b)) |
|
149144d854bb
Orthanc.test_anonymize_relationships_1/2
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
130
diff
changeset
|
3933 b1 = b[0]['ID'] |
|
149144d854bb
Orthanc.test_anonymize_relationships_1/2
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
130
diff
changeset
|
3934 b2 = b[1]['ID'] |
|
149144d854bb
Orthanc.test_anonymize_relationships_1/2
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
130
diff
changeset
|
3935 |
|
149144d854bb
Orthanc.test_anonymize_relationships_1/2
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
130
diff
changeset
|
3936 SEQUENCE = '/instances/%s/content/SourceImageSequence' |
|
149144d854bb
Orthanc.test_anonymize_relationships_1/2
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
130
diff
changeset
|
3937 SOP = '/instances/%s/content/SourceImageSequence/%d/ReferencedSOPInstanceUID' |
|
149144d854bb
Orthanc.test_anonymize_relationships_1/2
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
130
diff
changeset
|
3938 CLASS = '/instances/%s/content/SourceImageSequence/%d/ReferencedSOPClassUID' |
|
149144d854bb
Orthanc.test_anonymize_relationships_1/2
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
130
diff
changeset
|
3939 |
|
149144d854bb
Orthanc.test_anonymize_relationships_1/2
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
130
diff
changeset
|
3940 self.assertEqual(1, len(DoGet(_REMOTE, SEQUENCE % a1))) |
|
149144d854bb
Orthanc.test_anonymize_relationships_1/2
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
130
diff
changeset
|
3941 self.assertEqual(1, len(DoGet(_REMOTE, SEQUENCE % a2))) |
|
149144d854bb
Orthanc.test_anonymize_relationships_1/2
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
130
diff
changeset
|
3942 self.assertEqual(1, len(DoGet(_REMOTE, SEQUENCE % b1))) |
|
149144d854bb
Orthanc.test_anonymize_relationships_1/2
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
130
diff
changeset
|
3943 self.assertEqual(1, len(DoGet(_REMOTE, SEQUENCE % b2))) |
|
149144d854bb
Orthanc.test_anonymize_relationships_1/2
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
130
diff
changeset
|
3944 self.assertEqual(DoGet(_REMOTE, SOP % (a1, 0)), |
|
149144d854bb
Orthanc.test_anonymize_relationships_1/2
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
130
diff
changeset
|
3945 DoGet(_REMOTE, SOP % (a2, 0))) |
|
149144d854bb
Orthanc.test_anonymize_relationships_1/2
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
130
diff
changeset
|
3946 self.assertEqual(DoGet(_REMOTE, SOP % (b1, 0)), |
|
149144d854bb
Orthanc.test_anonymize_relationships_1/2
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
130
diff
changeset
|
3947 DoGet(_REMOTE, SOP % (b2, 0))) |
|
149144d854bb
Orthanc.test_anonymize_relationships_1/2
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
130
diff
changeset
|
3948 self.assertNotEqual(DoGet(_REMOTE, SOP % (a1, 0)), |
|
149144d854bb
Orthanc.test_anonymize_relationships_1/2
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
130
diff
changeset
|
3949 DoGet(_REMOTE, SOP % (b1, 0))) |
|
149144d854bb
Orthanc.test_anonymize_relationships_1/2
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
130
diff
changeset
|
3950 self.assertNotEqual(DoGet(_REMOTE, SOP % (a2, 0)), |
|
149144d854bb
Orthanc.test_anonymize_relationships_1/2
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
130
diff
changeset
|
3951 DoGet(_REMOTE, SOP % (b2, 0))) |
|
149144d854bb
Orthanc.test_anonymize_relationships_1/2
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
130
diff
changeset
|
3952 self.assertEqual(DoGet(_REMOTE, CLASS % (a1, 0)), |
|
149144d854bb
Orthanc.test_anonymize_relationships_1/2
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
130
diff
changeset
|
3953 DoGet(_REMOTE, CLASS % (b1, 0))) |
|
149144d854bb
Orthanc.test_anonymize_relationships_1/2
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
130
diff
changeset
|
3954 self.assertEqual(DoGet(_REMOTE, CLASS % (a2, 0)), |
|
149144d854bb
Orthanc.test_anonymize_relationships_1/2
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
130
diff
changeset
|
3955 DoGet(_REMOTE, CLASS % (b2, 0))) |
|
133
f0d4c4707e64
test_anonymize_relationships_3
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
132
diff
changeset
|
3956 |
|
f0d4c4707e64
test_anonymize_relationships_3
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
132
diff
changeset
|
3957 |
|
f0d4c4707e64
test_anonymize_relationships_3
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
132
diff
changeset
|
3958 def test_anonymize_relationships_3(self): |
|
f0d4c4707e64
test_anonymize_relationships_3
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
132
diff
changeset
|
3959 sr1 = UploadInstance(_REMOTE, 'HierarchicalAnonymization/StructuredReports/IM0')['ID'] |
|
f0d4c4707e64
test_anonymize_relationships_3
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
132
diff
changeset
|
3960 mr1 = UploadInstance(_REMOTE, 'HierarchicalAnonymization/StructuredReports/IM631')['ID'] |
|
f0d4c4707e64
test_anonymize_relationships_3
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
132
diff
changeset
|
3961 study = 'ef351eb2-c1147229-062736b8-35a151e3-e32d526b' |
|
f0d4c4707e64
test_anonymize_relationships_3
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
132
diff
changeset
|
3962 |
|
f0d4c4707e64
test_anonymize_relationships_3
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
132
diff
changeset
|
3963 anonymized = DoPost(_REMOTE, '/studies/%s/anonymize' % study, |
|
f0d4c4707e64
test_anonymize_relationships_3
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
132
diff
changeset
|
3964 { "Keep" : [ "ContentSequence" ] }) ['ID'] |
|
f0d4c4707e64
test_anonymize_relationships_3
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
132
diff
changeset
|
3965 |
|
f0d4c4707e64
test_anonymize_relationships_3
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
132
diff
changeset
|
3966 a = DoGet(_REMOTE, '/studies/%s/instances' % anonymized) |
|
f0d4c4707e64
test_anonymize_relationships_3
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
132
diff
changeset
|
3967 self.assertEqual(2, len(a)) |
|
f0d4c4707e64
test_anonymize_relationships_3
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
132
diff
changeset
|
3968 |
|
f0d4c4707e64
test_anonymize_relationships_3
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
132
diff
changeset
|
3969 if DoGet(_REMOTE, '/instances/%s/content/Modality' % a[0]['ID']) == 'SR': |
|
f0d4c4707e64
test_anonymize_relationships_3
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
132
diff
changeset
|
3970 sr2 = a[0]['ID'] |
|
f0d4c4707e64
test_anonymize_relationships_3
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
132
diff
changeset
|
3971 mr2 = a[1]['ID'] |
|
f0d4c4707e64
test_anonymize_relationships_3
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
132
diff
changeset
|
3972 else: |
|
f0d4c4707e64
test_anonymize_relationships_3
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
132
diff
changeset
|
3973 sr2 = a[1]['ID'] |
|
f0d4c4707e64
test_anonymize_relationships_3
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
132
diff
changeset
|
3974 mr2 = a[0]['ID'] |
|
f0d4c4707e64
test_anonymize_relationships_3
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
132
diff
changeset
|
3975 |
|
f0d4c4707e64
test_anonymize_relationships_3
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
132
diff
changeset
|
3976 self.assertEqual(DoGet(_REMOTE, '/instances/%s/content/Modality' % sr1), |
|
f0d4c4707e64
test_anonymize_relationships_3
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
132
diff
changeset
|
3977 DoGet(_REMOTE, '/instances/%s/content/Modality' % sr2)) |
|
f0d4c4707e64
test_anonymize_relationships_3
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
132
diff
changeset
|
3978 self.assertEqual(DoGet(_REMOTE, '/instances/%s/content/Modality' % mr1), |
|
f0d4c4707e64
test_anonymize_relationships_3
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
132
diff
changeset
|
3979 DoGet(_REMOTE, '/instances/%s/content/Modality' % mr2)) |
|
f0d4c4707e64
test_anonymize_relationships_3
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
132
diff
changeset
|
3980 |
|
f0d4c4707e64
test_anonymize_relationships_3
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
132
diff
changeset
|
3981 mrUid1 = DoGet(_REMOTE, '/instances/%s' % mr1)['MainDicomTags']['SOPInstanceUID'] |
|
f0d4c4707e64
test_anonymize_relationships_3
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
132
diff
changeset
|
3982 mrUid2 = DoGet(_REMOTE, '/instances/%s' % mr2)['MainDicomTags']['SOPInstanceUID'] |
|
f0d4c4707e64
test_anonymize_relationships_3
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
132
diff
changeset
|
3983 mrSeries1 = DoGet(_REMOTE, '/instances/%s/content/SeriesInstanceUID' % mr1).strip('\x00') |
|
f0d4c4707e64
test_anonymize_relationships_3
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
132
diff
changeset
|
3984 mrSeries2 = DoGet(_REMOTE, '/instances/%s/content/SeriesInstanceUID' % mr2).strip('\x00') |
|
f0d4c4707e64
test_anonymize_relationships_3
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
132
diff
changeset
|
3985 mrStudy1 = DoGet(_REMOTE, '/instances/%s/content/StudyInstanceUID' % mr1).strip('\x00') |
|
f0d4c4707e64
test_anonymize_relationships_3
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
132
diff
changeset
|
3986 mrStudy2 = DoGet(_REMOTE, '/instances/%s/content/StudyInstanceUID' % mr2).strip('\x00') |
|
f0d4c4707e64
test_anonymize_relationships_3
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
132
diff
changeset
|
3987 |
|
f0d4c4707e64
test_anonymize_relationships_3
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
132
diff
changeset
|
3988 PATH1 = '/instances/%s/content/CurrentRequestedProcedureEvidenceSequence' |
|
f0d4c4707e64
test_anonymize_relationships_3
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
132
diff
changeset
|
3989 PATH2 = PATH1 + '/0/ReferencedSeriesSequence' |
|
f0d4c4707e64
test_anonymize_relationships_3
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
132
diff
changeset
|
3990 PATH3 = PATH2 + '/0/ReferencedSOPSequence' |
|
f0d4c4707e64
test_anonymize_relationships_3
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
132
diff
changeset
|
3991 PATH4 = PATH3 + '/0/ReferencedSOPInstanceUID' |
|
f0d4c4707e64
test_anonymize_relationships_3
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
132
diff
changeset
|
3992 PATH5 = PATH3 + '/0/ReferencedSOPClassUID' |
|
f0d4c4707e64
test_anonymize_relationships_3
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
132
diff
changeset
|
3993 |
|
f0d4c4707e64
test_anonymize_relationships_3
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
132
diff
changeset
|
3994 self.assertEqual(1, len(DoGet(_REMOTE, PATH1 % sr1))) |
|
f0d4c4707e64
test_anonymize_relationships_3
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
132
diff
changeset
|
3995 self.assertEqual(1, len(DoGet(_REMOTE, PATH2 % sr1))) |
|
f0d4c4707e64
test_anonymize_relationships_3
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
132
diff
changeset
|
3996 self.assertEqual(1, len(DoGet(_REMOTE, PATH3 % sr1))) |
|
f0d4c4707e64
test_anonymize_relationships_3
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
132
diff
changeset
|
3997 self.assertEqual(DoGet(_REMOTE, PATH4 % sr1), mrUid1) |
|
f0d4c4707e64
test_anonymize_relationships_3
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
132
diff
changeset
|
3998 self.assertEqual(mrSeries1, DoGet(_REMOTE, (PATH2 + '/0/SeriesInstanceUID') % sr1).strip('\x00')) |
|
f0d4c4707e64
test_anonymize_relationships_3
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
132
diff
changeset
|
3999 self.assertEqual(mrStudy1, DoGet(_REMOTE, (PATH1 + '/0/StudyInstanceUID') % sr1).strip('\x00')) |
|
f0d4c4707e64
test_anonymize_relationships_3
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
132
diff
changeset
|
4000 |
|
f0d4c4707e64
test_anonymize_relationships_3
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
132
diff
changeset
|
4001 self.assertEqual(1, len(DoGet(_REMOTE, PATH1 % sr2))) |
|
f0d4c4707e64
test_anonymize_relationships_3
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
132
diff
changeset
|
4002 self.assertEqual(1, len(DoGet(_REMOTE, PATH2 % sr2))) |
|
f0d4c4707e64
test_anonymize_relationships_3
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
132
diff
changeset
|
4003 self.assertEqual(1, len(DoGet(_REMOTE, PATH3 % sr2))) |
|
f0d4c4707e64
test_anonymize_relationships_3
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
132
diff
changeset
|
4004 self.assertEqual(DoGet(_REMOTE, PATH5 % sr1), DoGet(_REMOTE, PATH5 % sr2)) |
|
f0d4c4707e64
test_anonymize_relationships_3
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
132
diff
changeset
|
4005 |
|
f0d4c4707e64
test_anonymize_relationships_3
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
132
diff
changeset
|
4006 self.assertEqual(mrUid2, DoGet(_REMOTE, PATH4 % sr2).strip('\x00')) |
|
f0d4c4707e64
test_anonymize_relationships_3
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
132
diff
changeset
|
4007 self.assertEqual(mrSeries2, DoGet(_REMOTE, (PATH2 + '/0/SeriesInstanceUID') % sr2).strip('\x00')) |
|
f0d4c4707e64
test_anonymize_relationships_3
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
132
diff
changeset
|
4008 self.assertEqual(mrStudy2, DoGet(_REMOTE, (PATH1 + '/0/StudyInstanceUID') % sr2).strip('\x00')) |
|
f0d4c4707e64
test_anonymize_relationships_3
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
132
diff
changeset
|
4009 |
|
f0d4c4707e64
test_anonymize_relationships_3
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
132
diff
changeset
|
4010 content1 = DoGet(_REMOTE, '/instances/%s/tags?simplify' % sr1) ['ContentSequence'] |
|
f0d4c4707e64
test_anonymize_relationships_3
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
132
diff
changeset
|
4011 content2 = DoGet(_REMOTE, '/instances/%s/tags?simplify' % sr2) ['ContentSequence'] |
|
f0d4c4707e64
test_anonymize_relationships_3
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
132
diff
changeset
|
4012 self.assertEqual(str(content1), str(content2)) |
|
141
5de178abe4d8
test_bitbucket_issue_94
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
138
diff
changeset
|
4013 |
|
5de178abe4d8
test_bitbucket_issue_94
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
138
diff
changeset
|
4014 |
|
5de178abe4d8
test_bitbucket_issue_94
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
138
diff
changeset
|
4015 def test_bitbucket_issue_94(self): |
|
5de178abe4d8
test_bitbucket_issue_94
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
138
diff
changeset
|
4016 # "a simple instance modification should not modify FrameOfReferenceUID + ..." |
| 319 | 4017 # https://bugs.orthanc-server.com/show_bug.cgi?id=94 |
|
141
5de178abe4d8
test_bitbucket_issue_94
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
138
diff
changeset
|
4018 i = UploadInstance(_REMOTE, 'Issue94.dcm')['ID'] |
|
5de178abe4d8
test_bitbucket_issue_94
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
138
diff
changeset
|
4019 |
|
5de178abe4d8
test_bitbucket_issue_94
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
138
diff
changeset
|
4020 source = DoGet(_REMOTE, '/instances/%s/attachments/dicom/data' % i) |
|
5de178abe4d8
test_bitbucket_issue_94
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
138
diff
changeset
|
4021 |
|
5de178abe4d8
test_bitbucket_issue_94
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
138
diff
changeset
|
4022 modified = DoPost(_REMOTE, '/instances/%s/modify' % i, |
|
5de178abe4d8
test_bitbucket_issue_94
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
138
diff
changeset
|
4023 { "Replace" : {"PatientID" : "toto"}, "Force": True}) |
|
5de178abe4d8
test_bitbucket_issue_94
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
138
diff
changeset
|
4024 |
|
5de178abe4d8
test_bitbucket_issue_94
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
138
diff
changeset
|
4025 anonymized = DoPost(_REMOTE, '/instances/%s/anonymize' % i) |
|
5de178abe4d8
test_bitbucket_issue_94
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
138
diff
changeset
|
4026 |
|
5de178abe4d8
test_bitbucket_issue_94
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
138
diff
changeset
|
4027 a = ExtractDicomTags(source, [ 'FrameOfReferenceUID' ]) |
|
5de178abe4d8
test_bitbucket_issue_94
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
138
diff
changeset
|
4028 self.assertEqual(1, len(a)) |
|
5de178abe4d8
test_bitbucket_issue_94
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
138
diff
changeset
|
4029 |
|
5de178abe4d8
test_bitbucket_issue_94
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
138
diff
changeset
|
4030 b = ExtractDicomTags(modified, [ 'FrameOfReferenceUID' ]) |
|
5de178abe4d8
test_bitbucket_issue_94
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
138
diff
changeset
|
4031 self.assertEqual(1, len(b)) |
|
5de178abe4d8
test_bitbucket_issue_94
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
138
diff
changeset
|
4032 |
|
5de178abe4d8
test_bitbucket_issue_94
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
138
diff
changeset
|
4033 c = ExtractDicomTags(anonymized, [ 'FrameOfReferenceUID' ]) |
|
5de178abe4d8
test_bitbucket_issue_94
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
138
diff
changeset
|
4034 self.assertEqual(1, len(c)) |
|
5de178abe4d8
test_bitbucket_issue_94
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
138
diff
changeset
|
4035 |
|
5de178abe4d8
test_bitbucket_issue_94
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
138
diff
changeset
|
4036 self.assertEqual(a, b) # Modified DICOM |
|
5de178abe4d8
test_bitbucket_issue_94
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
138
diff
changeset
|
4037 self.assertNotEqual(a, c) # Anonymized DICOM |
|
143
28d50ffac07d
test_metadata_origin
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
142
diff
changeset
|
4038 |
|
28d50ffac07d
test_metadata_origin
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
142
diff
changeset
|
4039 |
|
28d50ffac07d
test_metadata_origin
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
142
diff
changeset
|
4040 def test_metadata_origin(self): |
|
28d50ffac07d
test_metadata_origin
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
142
diff
changeset
|
4041 # Upload using the REST API |
|
144
7809fdf8056f
testing metadata?expand
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
143
diff
changeset
|
4042 i = UploadInstance(_REMOTE, 'Knee/T1/IM-0001-0001.dcm')['ID'] |
|
143
28d50ffac07d
test_metadata_origin
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
142
diff
changeset
|
4043 self.assertEqual('RestApi', DoGet(_REMOTE, '/instances/%s/metadata/Origin' % i)) |
|
28d50ffac07d
test_metadata_origin
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
142
diff
changeset
|
4044 self.assertEqual('', DoGet(_REMOTE, '/instances/%s/metadata/RemoteAET' % i)) |
|
28d50ffac07d
test_metadata_origin
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4045 self.assertNotEqual('', DoGet(_REMOTE, '/instances/%s/metadata/RemoteIP' % i)) |
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4046 self.assertRaises(Exception, lambda: DoGet(_REMOTE, '/instances/%s/metadata/CalledAET' % i)) |
| 315 | 4047 |
| 4048 # "HttpUsername" is empty iff "AuthenticationEnabled" is "false" | |
| 4049 self.assertTrue(DoGet(_REMOTE, '/instances/%s/metadata/HttpUsername' % i) in [ '', 'alice' ]) | |
| 4050 | |
|
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4051 m = DoGet(_REMOTE, '/instances/%s/metadata?expand' % i) |
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4052 self.assertEqual('RestApi', m['Origin']) |
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4053 self.assertEqual('', m['RemoteAET']) |
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4054 self.assertNotEqual('', m['RemoteIP']) |
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4055 self.assertFalse('CalledAET' in m) |
| 315 | 4056 self.assertTrue('HttpUsername' in m) |
| 4057 self.assertTrue(m['HttpUsername'] in [ '', 'alice' ]) | |
|
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4058 |
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4059 self.assertEqual('1.2.840.10008.1.2.4.91', m['TransferSyntax']) |
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4060 self.assertEqual('1.2.840.10008.5.1.4.1.1.4', m['SopClassUid']) |
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4061 self.assertEqual('1', m['IndexInSeries']) |
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4062 self.assertTrue('ReceptionDate' in m) |
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4063 |
|
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4064 DoDelete(_REMOTE, '/instances/%s' % i) |
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4065 |
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4066 # Upload using the DICOM protocol |
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4067 subprocess.check_call([ FindExecutable('storescu'), |
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4068 _REMOTE['Server'], str(_REMOTE['DicomPort']), |
|
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4069 GetDatabasePath('Knee/T1/IM-0001-0001.dcm'), |
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4070 '-xw' ]) # Propose JPEG2000 |
|
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4071 self.assertEqual('DicomProtocol', DoGet(_REMOTE, '/instances/%s/metadata/Origin' % i)) |
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4072 self.assertEqual('STORESCU', DoGet(_REMOTE, '/instances/%s/metadata/RemoteAET' % i)) |
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4073 self.assertNotEqual('', DoGet(_REMOTE, '/instances/%s/metadata/RemoteIP' % i)) |
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4074 self.assertEqual('ANY-SCP', DoGet(_REMOTE, '/instances/%s/metadata/CalledAET' % i)) |
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4075 self.assertRaises(Exception, lambda: DoGet(_REMOTE, '/instances/%s/metadata/HttpUsername' % i)) |
|
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4076 |
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4077 m = DoGet(_REMOTE, '/instances/%s/metadata?expand' % i) |
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4078 self.assertEqual('DicomProtocol', m['Origin']) |
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4079 self.assertEqual('STORESCU', m['RemoteAET']) |
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4080 self.assertNotEqual('', m['RemoteIP']) |
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4081 self.assertEqual('ANY-SCP', m['CalledAET']) |
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4082 self.assertFalse('HttpUsername' in m) |
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4083 |
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4084 self.assertEqual('1.2.840.10008.1.2.4.91', m['TransferSyntax']) |
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4085 self.assertEqual('1.2.840.10008.5.1.4.1.1.4', m['SopClassUid']) |
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4086 self.assertEqual('1', m['IndexInSeries']) |
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4087 self.assertTrue('ReceptionDate' in m) |
| 147 | 4088 |
| 4089 | |
| 4090 def test_lua_deadlock(self): | |
| 4091 # Rana Asim Wajid (2018-07-14): "It does seem that the issue | |
| 4092 # is with the lua script I'm using for conversion of images to | |
| 4093 # JPEG2000. When the script is used with 1.4.0 the first | |
| 4094 # instance appears to be stored and then everything just | |
| 4095 # halts, ie Orthanc wont respond to anything after that." | |
| 4096 # https://groups.google.com/d/msg/orthanc-users/Rc-Beb42xc8/JUgdzrmCAgAJ | |
| 174 | 4097 InstallLuaScriptFromPath(_REMOTE, 'Lua/Jpeg2000Conversion.lua') |
| 147 | 4098 |
| 4099 subprocess.check_call([ FindExecutable('storescu'), | |
| 4100 _REMOTE['Server'], str(_REMOTE['DicomPort']), | |
| 4101 GetDatabasePath('Brainix/Flair/IM-0001-0001.dcm'), | |
| 4102 GetDatabasePath('Brainix/Flair/IM-0001-0002.dcm'), | |
| 4103 ]) | |
| 4104 | |
| 4105 instances = DoGet(_REMOTE, '/instances') | |
| 4106 self.assertEqual(2, len(instances)) | |
| 4107 | |
| 4108 t1 = DoGet(_REMOTE, '/instances/%s/metadata/TransferSyntax' % instances[0]) | |
| 4109 t2 = DoGet(_REMOTE, '/instances/%s/metadata/TransferSyntax' % instances[1]) | |
| 175 | 4110 self.assertEqual('1.2.840.10008.1.2.4.90', t1) # this will fail if libgdcm-tools is not installed |
| 147 | 4111 self.assertEqual(t1, t2); |
|
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4112 |
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4113 |
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4114 def test_find_group_length(self): |
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4115 # Orthanc <= 1.4.1 fails to answer C-FIND queries that contain |
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4116 # one of the Generic Group Length tags (*, 0x0000) |
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4117 a = UploadInstance(_REMOTE, 'Brainix/Flair/IM-0001-0001.dcm')['ID'] |
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4118 result = CallFindScu([ '-k', '0008,0052=STUDY', '-k', '0008,0000=80' ]) |
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4119 self.assertFalse('UnableToProcess' in result) |
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4120 self.assertFalse('E:' in result) |
|
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4121 |
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4122 |
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|
4123 def test_split(self): |
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4124 UploadInstance(_REMOTE, 'Knee/T1/IM-0001-0001.dcm') |
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4125 UploadInstance(_REMOTE, 'Knee/T2/IM-0001-0001.dcm') |
|
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4126 knee1Sop = '1.3.46.670589.11.17521.5.0.3124.2008081908590448738' |
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4127 knee2Sop = '1.3.46.670589.11.17521.5.0.3124.2008081909113806560' |
|
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4128 study = '0a9b3153-2512774b-2d9580de-1fc3dcf6-3bd83918' |
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4129 t1 = '6de73705-c4e65c1b-9d9ea1b5-cabcd8e7-f15e4285' |
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4130 t2 = 'bbf7a453-0d34251a-03663b55-46bb31b9-ffd74c59' |
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4131 |
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4132 self.assertEqual(1, len(DoGet(_REMOTE, '/studies'))) |
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4133 self.assertEqual(2, len(DoGet(_REMOTE, '/series'))) |
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4134 |
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4135 info = DoGet(_REMOTE, '/studies/%s' % study) |
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4136 self.assertTrue('ReferringPhysicianName' in info['MainDicomTags']) |
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4137 |
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4138 job = MonitorJob2(_REMOTE, lambda: DoPost |
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4139 (_REMOTE, '/studies/%s/split' % study, { |
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|
4140 'Series' : [ t2 ], |
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4141 'Replace' : { 'PatientName' : 'Hello' }, |
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|
4142 'Remove' : [ 'ReferringPhysicianName' ], |
| 181 | 4143 'KeepSource' : False, |
| 4144 'Asynchronous' : True | |
|
179
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4145 })) |
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4146 |
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|
4147 self.assertNotEqual(None, job) |
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4148 |
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|
4149 studies = set(DoGet(_REMOTE, '/studies')) |
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4150 self.assertEqual(2, len(studies)) |
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4151 |
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|
4152 series = set(DoGet(_REMOTE, '/series')) |
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4153 self.assertEqual(2, len(series)) |
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4154 self.assertTrue(t1 in series) |
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4155 |
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4156 study2 = DoGet(_REMOTE, '/jobs/%s' % job)['Content']['TargetStudy'] |
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4157 self.assertTrue(study in studies) |
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4158 self.assertTrue(study2 in studies) |
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4159 |
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|
4160 info = DoGet(_REMOTE, '/studies/%s' % study2) |
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4161 self.assertTrue('Hello', info['PatientMainDicomTags']['PatientName']) |
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4162 self.assertFalse('ReferringPhysicianName' in info['MainDicomTags']) |
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4163 |
|
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4164 sopInstanceUids = set() |
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4165 for i in DoGet(_REMOTE, '/instances?expand'): |
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4166 sopInstanceUids.add(i['MainDicomTags']['SOPInstanceUID']) |
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4167 |
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4168 self.assertTrue(knee1Sop in sopInstanceUids) |
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4169 |
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4170 # Fails if Orthanc <= 1.5.7 |
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4171 self.assertFalse(knee2Sop in sopInstanceUids) # Because "KeepSource" is False |
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4172 |
|
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4173 # One original instance is kept, another one is added because of the split |
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4174 self.assertEqual(2, len(sopInstanceUids)) |
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4175 |
|
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4176 |
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4177 def test_merge(self): |
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4178 UploadInstance(_REMOTE, 'Knee/T1/IM-0001-0001.dcm') |
|
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4179 UploadInstance(_REMOTE, 'Brainix/Flair/IM-0001-0001.dcm') |
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4180 kneeSop = '1.3.46.670589.11.17521.5.0.3124.2008081908590448738' |
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4181 brainixSop = '1.3.46.670589.11.0.0.11.4.2.0.8743.5.5396.2006120114314079549' |
|
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4182 knee = '0a9b3153-2512774b-2d9580de-1fc3dcf6-3bd83918' |
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4183 t1 = '6de73705-c4e65c1b-9d9ea1b5-cabcd8e7-f15e4285' |
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4184 brainix = '27f7126f-4f66fb14-03f4081b-f9341db2-53925988' |
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4185 flair = '1e2c125c-411b8e86-3f4fe68e-a7584dd3-c6da78f0' |
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4186 |
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4187 self.assertEqual(2, len(DoGet(_REMOTE, '/studies'))) |
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4188 self.assertEqual(2, len(DoGet(_REMOTE, '/series'))) |
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4189 |
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4190 job = MonitorJob2(_REMOTE, lambda: DoPost |
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4191 (_REMOTE, '/studies/%s/merge' % knee, { |
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4192 'Resources' : [ brainix ], |
| 181 | 4193 'KeepSource' : True, |
| 4194 'Synchronous' : False | |
|
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4195 })) |
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4196 |
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4197 self.assertNotEqual(None, job) |
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4198 |
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4199 studies = set(DoGet(_REMOTE, '/studies')) |
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4200 self.assertEqual(2, len(studies)) |
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4201 self.assertTrue(knee in studies) |
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4202 self.assertTrue(brainix in studies) |
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4203 |
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4204 series = set(DoGet(_REMOTE, '/studies/%s' % knee)['Series']) |
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4205 self.assertTrue(t1 in series) |
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4206 series.remove(t1) |
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4207 self.assertEqual(1, len(series)) |
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4208 |
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4209 instances = DoGet(_REMOTE, '/series/%s' % list(series)[0])['Instances'] |
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4210 self.assertEqual(1, len(instances)) |
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4211 merged = DoGet(_REMOTE, '/instances/%s/tags?simplify' % instances[0]) |
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4212 |
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4213 instances = DoGet(_REMOTE, '/series/%s' % t1)['Instances'] |
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4214 self.assertEqual(1, len(instances)) |
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4215 a = DoGet(_REMOTE, '/instances/%s/tags?simplify' % instances[0]) |
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4216 |
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4217 instances = DoGet(_REMOTE, '/series/%s' % flair)['Instances'] |
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4218 self.assertEqual(1, len(instances)) |
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4219 b = DoGet(_REMOTE, '/instances/%s/tags?simplify' % instances[0]) |
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4220 |
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4221 tags = DoGet(_REMOTE, '/studies/%s' % knee) |
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4222 |
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4223 for key in tags['PatientMainDicomTags']: |
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4224 self.assertEqual(a[key], merged[key]) |
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4225 if (key in b and key != 'PatientSex'): |
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4226 self.assertNotEqual(a[key], b[key]) |
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4227 |
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4228 for key in tags['MainDicomTags']: |
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4229 # Not in the patient/study module |
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4230 if (not key in [ 'InstitutionName', |
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4231 'RequestingPhysician', |
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4232 'RequestedProcedureDescription', ]): |
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4233 self.assertEqual(a[key], merged[key]) |
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4234 if (key in b): |
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4235 self.assertNotEqual(a[key], b[key]) |
|
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4236 |
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4237 sopInstanceUids = set() |
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4238 for i in DoGet(_REMOTE, '/instances?expand'): |
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4239 sopInstanceUids.add(i['MainDicomTags']['SOPInstanceUID']) |
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4240 |
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4241 self.assertTrue(kneeSop in sopInstanceUids) |
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4242 self.assertTrue(brainixSop in sopInstanceUids) |
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4243 |
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4244 # Fails if Orthanc <= 1.5.7 |
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4245 # The 2 original instances are kept, another one is added because of the merge |
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4246 self.assertEqual(3, len(sopInstanceUids)) |
|
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4247 |
| 187 | 4248 |
| 4249 def test_async_archive(self): | |
| 4250 # Testing the asynchronous generation of archives/medias (new | |
| 4251 # in Orthanc 1.4.3) | |
| 4252 UploadInstance(_REMOTE, 'Knee/T1/IM-0001-0001.dcm') | |
| 4253 UploadInstance(_REMOTE, 'Knee/T2/IM-0001-0001.dcm') | |
| 4254 | |
| 4255 kneeT1 = '6de73705-c4e65c1b-9d9ea1b5-cabcd8e7-f15e4285' | |
| 4256 kneeT2 = 'bbf7a453-0d34251a-03663b55-46bb31b9-ffd74c59' | |
| 4257 | |
| 4258 job = MonitorJob2(_REMOTE, lambda: DoPost | |
| 4259 (_REMOTE, '/studies/%s/archive' % kneeT1, { | |
| 4260 'Synchronous' : False | |
| 4261 })) | |
| 4262 | |
| 4263 z = GetArchive(_REMOTE, '/jobs/%s/archive' % job) | |
| 4264 self.assertEqual(1, len(z.namelist())) | |
| 4265 self.assertFalse('DICOMDIR' in z.namelist()) | |
| 4266 | |
|
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|
4267 info = DoGet(_REMOTE, '/jobs/%s' % job) |
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4268 self.assertEqual(0, info['Content']['ArchiveSizeMB']) # New in Orthanc 1.8.1 |
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|
4269 self.assertEqual(1, info['Content']['InstancesCount']) |
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|
4270 self.assertEqual(0, info['Content']['UncompressedSizeMB']) |
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4271 |
| 187 | 4272 job2 = MonitorJob2(_REMOTE, lambda: DoPost |
| 4273 (_REMOTE, '/studies/%s/media' % kneeT1, { | |
| 4274 'Synchronous' : False | |
| 4275 })) | |
| 4276 | |
| 4277 # The archive from the first job has been replaced by the | |
| 4278 # archive from second job (as MediaArchiveSize == 1) | |
| 4279 self.assertRaises(Exception, lambda: GetArchive(_REMOTE, '/jobs/%s/archive' % job)) | |
| 4280 | |
| 4281 z = GetArchive(_REMOTE, '/jobs/%s/archive' % job2) | |
| 4282 self.assertEqual(2, len(z.namelist())) | |
| 4283 self.assertTrue('DICOMDIR' in z.namelist()) | |
| 4284 | |
|
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|
4285 info = DoGet(_REMOTE, '/jobs/%s' % job2) |
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|
4286 self.assertEqual(0, info['Content']['ArchiveSizeMB']) # New in Orthanc 1.8.1 |
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4287 self.assertEqual(1, info['Content']['InstancesCount']) |
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4288 self.assertEqual(0, info['Content']['UncompressedSizeMB']) |
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|
4289 |
| 187 | 4290 job = MonitorJob2(_REMOTE, lambda: DoPost |
| 4291 (_REMOTE, '/tools/create-archive', { | |
| 4292 'Synchronous' : False, | |
| 4293 'Resources' : [ kneeT1, kneeT2 ], | |
| 4294 })) | |
| 4295 | |
| 4296 z = GetArchive(_REMOTE, '/jobs/%s/archive' % job) | |
| 4297 self.assertEqual(2, len(z.namelist())) | |
| 4298 self.assertFalse('DICOMDIR' in z.namelist()) | |
| 4299 | |
|
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4300 info = DoGet(_REMOTE, '/jobs/%s' % job) |
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|
4301 self.assertEqual(0, info['Content']['ArchiveSizeMB']) # New in Orthanc 1.8.1 |
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|
4302 self.assertEqual(2, info['Content']['InstancesCount']) |
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|
4303 self.assertEqual(0, info['Content']['UncompressedSizeMB']) |
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4304 |
| 187 | 4305 job = MonitorJob2(_REMOTE, lambda: DoPost |
| 4306 (_REMOTE, '/tools/create-media', { | |
| 4307 'Synchronous' : False, | |
| 4308 'Resources' : [ kneeT1, kneeT2 ], | |
| 4309 })) | |
| 4310 | |
| 4311 z = GetArchive(_REMOTE, '/jobs/%s/archive' % job) | |
| 4312 self.assertEqual(3, len(z.namelist())) | |
| 4313 self.assertTrue('DICOMDIR' in z.namelist()) | |
|
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4314 |
|
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4315 self.assertEqual(0, info['Content']['ArchiveSizeMB']) # New in Orthanc 1.8.1 |
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4316 self.assertEqual(2, info['Content']['InstancesCount']) |
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4317 self.assertEqual(0, info['Content']['UncompressedSizeMB']) |
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4318 |
| 187 | 4319 |
|
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|
4320 def test_queries_hierarchy(self): |
|
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|
4321 UploadInstance(_REMOTE, 'Knee/T1/IM-0001-0001.dcm') |
|
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|
4322 UploadInstance(_REMOTE, 'Brainix/Flair/IM-0001-0001.dcm') |
|
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changeset
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4323 |
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|
4324 tags = { |
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4325 'NumberOfPatientRelatedInstances' : '', |
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|
4326 'NumberOfPatientRelatedSeries' : '', |
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|
4327 'NumberOfPatientRelatedStudies' : '', |
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|
4328 'NumberOfStudyRelatedInstances' : '', |
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diff
changeset
|
4329 'NumberOfStudyRelatedSeries' : '', |
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diff
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|
4330 'NumberOfSeriesRelatedInstances' : '', |
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|
4331 } |
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4332 |
|
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test_dicom_disk_size
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|
4333 tags2 = copy.copy(tags) |
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|
4334 tags2['PatientID'] = '887' # Only consider the "Knee" patient |
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4335 |
|
188
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4336 patient = DoPost(_REMOTE, '/modalities/self/query', { |
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4337 'Level' : 'Patient', |
|
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4338 'Query' : tags2 |
|
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4339 }) ['ID'] |
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diff
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4340 |
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diff
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|
4341 study = DoPost(_REMOTE, '/modalities/self/query', { |
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|
4342 'Level' : 'Study', |
|
189
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|
4343 'Query' : tags2 |
|
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|
4344 }) ['ID'] |
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diff
changeset
|
4345 |
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diff
changeset
|
4346 series = DoPost(_REMOTE, '/modalities/self/query', { |
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|
4347 'Level' : 'Series', |
|
189
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|
4348 'Query' : tags2 |
|
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changeset
|
4349 }) ['ID'] |
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diff
changeset
|
4350 |
|
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diff
changeset
|
4351 instance = DoPost(_REMOTE, '/modalities/self/query', { |
|
7d585263808b
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diff
changeset
|
4352 'Level' : 'Instance', |
|
189
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test_dicom_disk_size
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changeset
|
4353 'Query' : tags2 |
|
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changeset
|
4354 }) ['ID'] |
|
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diff
changeset
|
4355 |
|
7d585263808b
new test: test_queries_hierarchy
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diff
changeset
|
4356 p = DoGet(_REMOTE, '/queries/%s/answers?expand&simplify' % patient) |
|
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changeset
|
4357 self.assertEqual(1, len(p)) |
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changeset
|
4358 self.assertEqual('887', p[0]['PatientID']) |
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diff
changeset
|
4359 self.assertEqual('1', p[0]['NumberOfPatientRelatedInstances']) |
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7d585263808b
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diff
changeset
|
4360 self.assertEqual('1', p[0]['NumberOfPatientRelatedSeries']) |
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7d585263808b
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diff
changeset
|
4361 self.assertEqual('1', p[0]['NumberOfPatientRelatedStudies']) |
|
7d585263808b
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diff
changeset
|
4362 self.assertFalse('NumberOfStudyRelatedInstances' in p[0]) |
|
7d585263808b
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diff
changeset
|
4363 self.assertFalse('NumberOfStudyRelatedSeries' in p[0]) |
|
7d585263808b
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diff
changeset
|
4364 self.assertFalse('NumberOfSeriesRelatedInstances' in p[0]) |
|
7d585263808b
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diff
changeset
|
4365 |
|
7d585263808b
new test: test_queries_hierarchy
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diff
changeset
|
4366 p = DoGet(_REMOTE, '/queries/%s/answers?expand&simplify' % study) |
|
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new test: test_queries_hierarchy
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diff
changeset
|
4367 self.assertEqual(1, len(p)) |
|
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diff
changeset
|
4368 self.assertEqual('2.16.840.1.113669.632.20.121711.10000160881', p[0]['StudyInstanceUID']) |
|
7d585263808b
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diff
changeset
|
4369 self.assertEqual('1', p[0]['NumberOfStudyRelatedInstances']) |
|
7d585263808b
new test: test_queries_hierarchy
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diff
changeset
|
4370 self.assertEqual('1', p[0]['NumberOfStudyRelatedSeries']) |
|
7d585263808b
new test: test_queries_hierarchy
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parents:
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diff
changeset
|
4371 self.assertFalse('NumberOfPatientRelatedInstances' in p[0]) |
|
7d585263808b
new test: test_queries_hierarchy
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diff
changeset
|
4372 self.assertFalse('NumberOfPatientRelatedSeries' in p[0]) |
|
7d585263808b
new test: test_queries_hierarchy
Sebastien Jodogne <s.jodogne@gmail.com>
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diff
changeset
|
4373 self.assertFalse('NumberOfPatientRelatedInstances' in p[0]) |
|
7d585263808b
new test: test_queries_hierarchy
Sebastien Jodogne <s.jodogne@gmail.com>
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diff
changeset
|
4374 self.assertFalse('NumberOfSeriesRelatedInstances' in p[0]) |
|
7d585263808b
new test: test_queries_hierarchy
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diff
changeset
|
4375 |
|
7d585263808b
new test: test_queries_hierarchy
Sebastien Jodogne <s.jodogne@gmail.com>
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187
diff
changeset
|
4376 p = DoGet(_REMOTE, '/queries/%s/answers?expand&simplify' % series) |
|
7d585263808b
new test: test_queries_hierarchy
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diff
changeset
|
4377 self.assertEqual(1, len(p)) |
|
7d585263808b
new test: test_queries_hierarchy
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diff
changeset
|
4378 self.assertEqual('1.3.46.670589.11.17521.5.0.3124.2008081908564160709', p[0]['SeriesInstanceUID']) |
|
7d585263808b
new test: test_queries_hierarchy
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
187
diff
changeset
|
4379 self.assertEqual('1', p[0]['NumberOfSeriesRelatedInstances']) |
|
7d585263808b
new test: test_queries_hierarchy
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
187
diff
changeset
|
4380 self.assertFalse('NumberOfPatientRelatedInstances' in p[0]) |
|
7d585263808b
new test: test_queries_hierarchy
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
changeset
|
4381 self.assertFalse('NumberOfPatientRelatedSeries' in p[0]) |
|
7d585263808b
new test: test_queries_hierarchy
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
187
diff
changeset
|
4382 self.assertFalse('NumberOfPatientRelatedInstances' in p[0]) |
|
7d585263808b
new test: test_queries_hierarchy
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
changeset
|
4383 self.assertFalse('NumberOfStudyRelatedInstances' in p[0]) |
|
7d585263808b
new test: test_queries_hierarchy
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
187
diff
changeset
|
4384 self.assertFalse('NumberOfStudyRelatedSeries' in p[0]) |
|
7d585263808b
new test: test_queries_hierarchy
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
187
diff
changeset
|
4385 |
|
7d585263808b
new test: test_queries_hierarchy
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
187
diff
changeset
|
4386 p = DoGet(_REMOTE, '/queries/%s/answers?expand&simplify' % instance) |
|
7d585263808b
new test: test_queries_hierarchy
Sebastien Jodogne <s.jodogne@gmail.com>
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diff
changeset
|
4387 self.assertEqual(1, len(p)) |
|
7d585263808b
new test: test_queries_hierarchy
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
changeset
|
4388 self.assertEqual('1.3.46.670589.11.17521.5.0.3124.2008081908590448738', p[0]['SOPInstanceUID']) |
|
7d585263808b
new test: test_queries_hierarchy
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diff
changeset
|
4389 |
|
7d585263808b
new test: test_queries_hierarchy
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diff
changeset
|
4390 j = DoPost(_REMOTE, '/queries/%s/answers/0/query-studies' % patient, |
|
7d585263808b
new test: test_queries_hierarchy
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187
diff
changeset
|
4391 { 'Query' : tags }) ['ID'] |
|
7d585263808b
new test: test_queries_hierarchy
Sebastien Jodogne <s.jodogne@gmail.com>
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187
diff
changeset
|
4392 self.assertEqual(DoGet(_REMOTE, '/queries/%s/answers?expand&simplify' % j), |
|
7d585263808b
new test: test_queries_hierarchy
Sebastien Jodogne <s.jodogne@gmail.com>
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diff
changeset
|
4393 DoGet(_REMOTE, '/queries/%s/answers?expand&simplify' % study)) |
|
189
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test_dicom_disk_size
Sebastien Jodogne <s.jodogne@gmail.com>
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188
diff
changeset
|
4394 |
|
188
7d585263808b
new test: test_queries_hierarchy
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diff
changeset
|
4395 j = DoPost(_REMOTE, '/queries/%s/answers/0/query-series' % patient, |
|
7d585263808b
new test: test_queries_hierarchy
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diff
changeset
|
4396 { 'Query' : tags }) ['ID'] |
|
7d585263808b
new test: test_queries_hierarchy
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diff
changeset
|
4397 self.assertEqual(DoGet(_REMOTE, '/queries/%s/answers?expand&simplify' % j), |
|
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new test: test_queries_hierarchy
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diff
changeset
|
4398 DoGet(_REMOTE, '/queries/%s/answers?expand&simplify' % series)) |
|
7d585263808b
new test: test_queries_hierarchy
Sebastien Jodogne <s.jodogne@gmail.com>
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diff
changeset
|
4399 |
|
7d585263808b
new test: test_queries_hierarchy
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diff
changeset
|
4400 j = DoPost(_REMOTE, '/queries/%s/answers/0/query-instances' % patient, |
|
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diff
changeset
|
4401 { 'Query' : tags }) ['ID'] |
|
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new test: test_queries_hierarchy
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diff
changeset
|
4402 self.assertEqual(DoGet(_REMOTE, '/queries/%s/answers?expand&simplify' % j), |
|
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diff
changeset
|
4403 DoGet(_REMOTE, '/queries/%s/answers?expand&simplify' % instance)) |
|
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Sebastien Jodogne <s.jodogne@gmail.com>
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diff
changeset
|
4404 |
|
7d585263808b
new test: test_queries_hierarchy
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diff
changeset
|
4405 j = DoPost(_REMOTE, '/queries/%s/answers/0/query-series' % study, |
|
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diff
changeset
|
4406 { 'Query' : tags }) ['ID'] |
|
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diff
changeset
|
4407 self.assertEqual(DoGet(_REMOTE, '/queries/%s/answers?expand&simplify' % j), |
|
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diff
changeset
|
4408 DoGet(_REMOTE, '/queries/%s/answers?expand&simplify' % series)) |
|
7d585263808b
new test: test_queries_hierarchy
Sebastien Jodogne <s.jodogne@gmail.com>
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diff
changeset
|
4409 |
|
7d585263808b
new test: test_queries_hierarchy
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diff
changeset
|
4410 j = DoPost(_REMOTE, '/queries/%s/answers/0/query-instances' % study, |
|
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diff
changeset
|
4411 { 'Query' : tags }) ['ID'] |
|
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diff
changeset
|
4412 self.assertEqual(DoGet(_REMOTE, '/queries/%s/answers?expand&simplify' % j), |
|
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diff
changeset
|
4413 DoGet(_REMOTE, '/queries/%s/answers?expand&simplify' % instance)) |
|
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diff
changeset
|
4414 |
|
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diff
changeset
|
4415 j = DoPost(_REMOTE, '/queries/%s/answers/0/query-instances' % series, |
|
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diff
changeset
|
4416 { 'Query' : tags }) ['ID'] |
|
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diff
changeset
|
4417 self.assertEqual(DoGet(_REMOTE, '/queries/%s/answers?expand&simplify' % j), |
|
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diff
changeset
|
4418 DoGet(_REMOTE, '/queries/%s/answers?expand&simplify' % instance)) |
|
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diff
changeset
|
4419 |
|
7d585263808b
new test: test_queries_hierarchy
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187
diff
changeset
|
4420 |
|
189
11719f19bd62
test_dicom_disk_size
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
188
diff
changeset
|
4421 def test_dicom_disk_size(self): |
|
11719f19bd62
test_dicom_disk_size
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
188
diff
changeset
|
4422 dicomSize = 0 |
|
11719f19bd62
test_dicom_disk_size
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
188
diff
changeset
|
4423 |
|
11719f19bd62
test_dicom_disk_size
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
188
diff
changeset
|
4424 UploadInstance(_REMOTE, 'Brainix/Flair/IM-0001-0001.dcm') |
|
11719f19bd62
test_dicom_disk_size
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
188
diff
changeset
|
4425 |
|
11719f19bd62
test_dicom_disk_size
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
188
diff
changeset
|
4426 for i in range(2): |
|
11719f19bd62
test_dicom_disk_size
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
188
diff
changeset
|
4427 p = 'Knee/T%d/IM-0001-0001.dcm' % (i + 1) |
|
11719f19bd62
test_dicom_disk_size
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
188
diff
changeset
|
4428 UploadInstance(_REMOTE, p) |
|
11719f19bd62
test_dicom_disk_size
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
188
diff
changeset
|
4429 dicomSize += os.path.getsize(GetDatabasePath(p)) |
|
11719f19bd62
test_dicom_disk_size
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
188
diff
changeset
|
4430 |
|
11719f19bd62
test_dicom_disk_size
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
188
diff
changeset
|
4431 s = DoGet(_REMOTE, '/patients/ca29faea-b6a0e17f-067743a1-8b778011-a48b2a17/statistics') # Consider Knee patient |
|
11719f19bd62
test_dicom_disk_size
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
188
diff
changeset
|
4432 self.assertEqual(2, s['CountInstances']) |
|
11719f19bd62
test_dicom_disk_size
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
188
diff
changeset
|
4433 self.assertEqual(2, s['CountSeries']) |
|
11719f19bd62
test_dicom_disk_size
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
188
diff
changeset
|
4434 self.assertEqual(1, s['CountStudies']) |
|
11719f19bd62
test_dicom_disk_size
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
188
diff
changeset
|
4435 self.assertEqual(dicomSize, int(s['DicomDiskSize'])) |
|
11719f19bd62
test_dicom_disk_size
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
188
diff
changeset
|
4436 self.assertEqual(dicomSize, int(s['DicomUncompressedSize'])) |
|
11719f19bd62
test_dicom_disk_size
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
188
diff
changeset
|
4437 self.assertLess(dicomSize, int(s['UncompressedSize'])) |
|
11719f19bd62
test_dicom_disk_size
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
188
diff
changeset
|
4438 self.assertEqual(s['UncompressedSize'], s['DiskSize']) |
|
11719f19bd62
test_dicom_disk_size
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
188
diff
changeset
|
4439 |
|
202
f26f9ae9c599
test_changes_2 and test_bitbucket_issue_124
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
195
diff
changeset
|
4440 |
|
f26f9ae9c599
test_changes_2 and test_bitbucket_issue_124
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
195
diff
changeset
|
4441 def test_changes_2(self): |
|
f26f9ae9c599
test_changes_2 and test_bitbucket_issue_124
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
195
diff
changeset
|
4442 # More consistent behavior since Orthanc 1.5.2 |
|
f26f9ae9c599
test_changes_2 and test_bitbucket_issue_124
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
195
diff
changeset
|
4443 # https://groups.google.com/d/msg/orthanc-users/QhzB6vxYeZ0/YxabgqpfBAAJ |
|
f26f9ae9c599
test_changes_2 and test_bitbucket_issue_124
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
195
diff
changeset
|
4444 |
|
f26f9ae9c599
test_changes_2 and test_bitbucket_issue_124
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
195
diff
changeset
|
4445 # Make sure that this is not the first change |
|
f26f9ae9c599
test_changes_2 and test_bitbucket_issue_124
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
195
diff
changeset
|
4446 self.assertEqual(0, len(DoGet(_REMOTE, '/instances'))) |
|
f26f9ae9c599
test_changes_2 and test_bitbucket_issue_124
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
195
diff
changeset
|
4447 a = UploadInstance(_REMOTE, 'DummyCT.dcm')['ID'] |
|
f26f9ae9c599
test_changes_2 and test_bitbucket_issue_124
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
195
diff
changeset
|
4448 self.assertEqual(1, len(DoGet(_REMOTE, '/instances'))) |
|
f26f9ae9c599
test_changes_2 and test_bitbucket_issue_124
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
195
diff
changeset
|
4449 DoDelete(_REMOTE, '/instances/%s' % a) |
|
f26f9ae9c599
test_changes_2 and test_bitbucket_issue_124
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
195
diff
changeset
|
4450 |
|
f26f9ae9c599
test_changes_2 and test_bitbucket_issue_124
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
195
diff
changeset
|
4451 # No more instance, but there were previous changes |
|
f26f9ae9c599
test_changes_2 and test_bitbucket_issue_124
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
195
diff
changeset
|
4452 self.assertEqual(0, len(DoGet(_REMOTE, '/instances'))) |
|
f26f9ae9c599
test_changes_2 and test_bitbucket_issue_124
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
195
diff
changeset
|
4453 |
|
f26f9ae9c599
test_changes_2 and test_bitbucket_issue_124
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
195
diff
changeset
|
4454 c = DoGet(_REMOTE, '/changes') |
|
f26f9ae9c599
test_changes_2 and test_bitbucket_issue_124
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
195
diff
changeset
|
4455 self.assertEqual(0, len(c['Changes'])) |
|
f26f9ae9c599
test_changes_2 and test_bitbucket_issue_124
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
195
diff
changeset
|
4456 self.assertTrue(c['Done']) |
|
f26f9ae9c599
test_changes_2 and test_bitbucket_issue_124
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
195
diff
changeset
|
4457 seq = c['Last'] |
|
f26f9ae9c599
test_changes_2 and test_bitbucket_issue_124
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
195
diff
changeset
|
4458 |
|
f26f9ae9c599
test_changes_2 and test_bitbucket_issue_124
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
195
diff
changeset
|
4459 c = DoGet(_REMOTE, '/changes?last') |
|
f26f9ae9c599
test_changes_2 and test_bitbucket_issue_124
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
195
diff
changeset
|
4460 self.assertEqual(0, len(c['Changes'])) |
|
f26f9ae9c599
test_changes_2 and test_bitbucket_issue_124
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
195
diff
changeset
|
4461 self.assertTrue(c['Done']) |
|
f26f9ae9c599
test_changes_2 and test_bitbucket_issue_124
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
195
diff
changeset
|
4462 self.assertEqual(seq, c['Last']) |
|
f26f9ae9c599
test_changes_2 and test_bitbucket_issue_124
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
195
diff
changeset
|
4463 |
|
f26f9ae9c599
test_changes_2 and test_bitbucket_issue_124
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
195
diff
changeset
|
4464 c = DoGet(_REMOTE, '/changes?since=%d' % (seq + 1000)) |
|
f26f9ae9c599
test_changes_2 and test_bitbucket_issue_124
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
195
diff
changeset
|
4465 self.assertEqual(0, len(c['Changes'])) |
|
f26f9ae9c599
test_changes_2 and test_bitbucket_issue_124
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
195
diff
changeset
|
4466 self.assertTrue(c['Done']) |
|
f26f9ae9c599
test_changes_2 and test_bitbucket_issue_124
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
195
diff
changeset
|
4467 self.assertEqual(seq, c['Last']) |
|
f26f9ae9c599
test_changes_2 and test_bitbucket_issue_124
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
195
diff
changeset
|
4468 |
|
f26f9ae9c599
test_changes_2 and test_bitbucket_issue_124
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
195
diff
changeset
|
4469 # Add one instance |
|
f26f9ae9c599
test_changes_2 and test_bitbucket_issue_124
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
195
diff
changeset
|
4470 UploadInstance(_REMOTE, 'DummyCT.dcm') |
|
f26f9ae9c599
test_changes_2 and test_bitbucket_issue_124
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
195
diff
changeset
|
4471 self.assertEqual(1, len(DoGet(_REMOTE, '/instances'))) |
|
f26f9ae9c599
test_changes_2 and test_bitbucket_issue_124
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
195
diff
changeset
|
4472 |
|
f26f9ae9c599
test_changes_2 and test_bitbucket_issue_124
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
195
diff
changeset
|
4473 c = DoGet(_REMOTE, '/changes') |
|
f26f9ae9c599
test_changes_2 and test_bitbucket_issue_124
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
195
diff
changeset
|
4474 self.assertEqual(4, len(c['Changes'])) |
|
f26f9ae9c599
test_changes_2 and test_bitbucket_issue_124
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
195
diff
changeset
|
4475 self.assertTrue(c['Done']) |
|
f26f9ae9c599
test_changes_2 and test_bitbucket_issue_124
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
195
diff
changeset
|
4476 self.assertEqual(seq + 4, c['Last']) |
|
f26f9ae9c599
test_changes_2 and test_bitbucket_issue_124
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
195
diff
changeset
|
4477 |
|
f26f9ae9c599
test_changes_2 and test_bitbucket_issue_124
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
195
diff
changeset
|
4478 c = DoGet(_REMOTE, '/changes?last') |
|
f26f9ae9c599
test_changes_2 and test_bitbucket_issue_124
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
195
diff
changeset
|
4479 self.assertEqual(1, len(c['Changes'])) |
|
f26f9ae9c599
test_changes_2 and test_bitbucket_issue_124
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
195
diff
changeset
|
4480 self.assertTrue(c['Done']) |
|
f26f9ae9c599
test_changes_2 and test_bitbucket_issue_124
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
195
diff
changeset
|
4481 self.assertEqual(seq + 4, c['Last']) |
|
f26f9ae9c599
test_changes_2 and test_bitbucket_issue_124
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
195
diff
changeset
|
4482 |
|
f26f9ae9c599
test_changes_2 and test_bitbucket_issue_124
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
195
diff
changeset
|
4483 c = DoGet(_REMOTE, '/changes?since=%d' % (seq + 1000)) |
|
f26f9ae9c599
test_changes_2 and test_bitbucket_issue_124
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
195
diff
changeset
|
4484 self.assertEqual(0, len(c['Changes'])) |
|
f26f9ae9c599
test_changes_2 and test_bitbucket_issue_124
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
195
diff
changeset
|
4485 self.assertTrue(c['Done']) |
|
f26f9ae9c599
test_changes_2 and test_bitbucket_issue_124
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
195
diff
changeset
|
4486 self.assertEqual(seq + 4, c['Last']) |
|
f26f9ae9c599
test_changes_2 and test_bitbucket_issue_124
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
195
diff
changeset
|
4487 |
|
f26f9ae9c599
test_changes_2 and test_bitbucket_issue_124
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
195
diff
changeset
|
4488 # Remove the uploaded instance |
|
f26f9ae9c599
test_changes_2 and test_bitbucket_issue_124
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
195
diff
changeset
|
4489 DoDelete(_REMOTE, '/instances/%s' % a) |
|
f26f9ae9c599
test_changes_2 and test_bitbucket_issue_124
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
195
diff
changeset
|
4490 self.assertEqual(0, len(DoGet(_REMOTE, '/instances'))) |
|
f26f9ae9c599
test_changes_2 and test_bitbucket_issue_124
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
195
diff
changeset
|
4491 |
|
f26f9ae9c599
test_changes_2 and test_bitbucket_issue_124
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
195
diff
changeset
|
4492 c = DoGet(_REMOTE, '/changes') |
|
f26f9ae9c599
test_changes_2 and test_bitbucket_issue_124
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
195
diff
changeset
|
4493 self.assertEqual(0, len(c['Changes'])) |
|
f26f9ae9c599
test_changes_2 and test_bitbucket_issue_124
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
195
diff
changeset
|
4494 self.assertTrue(c['Done']) |
|
f26f9ae9c599
test_changes_2 and test_bitbucket_issue_124
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
195
diff
changeset
|
4495 self.assertEqual(seq + 4, c['Last']) |
|
f26f9ae9c599
test_changes_2 and test_bitbucket_issue_124
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
195
diff
changeset
|
4496 |
|
f26f9ae9c599
test_changes_2 and test_bitbucket_issue_124
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
195
diff
changeset
|
4497 c = DoGet(_REMOTE, '/changes?last') |
|
f26f9ae9c599
test_changes_2 and test_bitbucket_issue_124
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
195
diff
changeset
|
4498 self.assertEqual(0, len(c['Changes'])) |
|
f26f9ae9c599
test_changes_2 and test_bitbucket_issue_124
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
195
diff
changeset
|
4499 self.assertTrue(c['Done']) |
|
f26f9ae9c599
test_changes_2 and test_bitbucket_issue_124
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
195
diff
changeset
|
4500 self.assertEqual(seq + 4, c['Last']) |
|
f26f9ae9c599
test_changes_2 and test_bitbucket_issue_124
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
195
diff
changeset
|
4501 |
|
f26f9ae9c599
test_changes_2 and test_bitbucket_issue_124
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
195
diff
changeset
|
4502 c = DoGet(_REMOTE, '/changes?since=%d' % (seq + 1000)) |
|
f26f9ae9c599
test_changes_2 and test_bitbucket_issue_124
Sebastien Jodogne <s.jodogne@gmail.com>
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195
diff
changeset
|
4503 self.assertEqual(0, len(c['Changes'])) |
|
f26f9ae9c599
test_changes_2 and test_bitbucket_issue_124
Sebastien Jodogne <s.jodogne@gmail.com>
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195
diff
changeset
|
4504 self.assertTrue(c['Done']) |
|
f26f9ae9c599
test_changes_2 and test_bitbucket_issue_124
Sebastien Jodogne <s.jodogne@gmail.com>
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195
diff
changeset
|
4505 self.assertEqual(seq + 4, c['Last']) |
|
f26f9ae9c599
test_changes_2 and test_bitbucket_issue_124
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
195
diff
changeset
|
4506 |
|
f26f9ae9c599
test_changes_2 and test_bitbucket_issue_124
Sebastien Jodogne <s.jodogne@gmail.com>
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195
diff
changeset
|
4507 |
|
f26f9ae9c599
test_changes_2 and test_bitbucket_issue_124
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
195
diff
changeset
|
4508 def test_bitbucket_issue_124(self): |
|
f26f9ae9c599
test_changes_2 and test_bitbucket_issue_124
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
195
diff
changeset
|
4509 a = UploadInstance(_REMOTE, 'Issue124.dcm')['ID'] |
|
f26f9ae9c599
test_changes_2 and test_bitbucket_issue_124
Sebastien Jodogne <s.jodogne@gmail.com>
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diff
changeset
|
4510 |
|
f26f9ae9c599
test_changes_2 and test_bitbucket_issue_124
Sebastien Jodogne <s.jodogne@gmail.com>
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diff
changeset
|
4511 z = GetArchive(_REMOTE, '/patients/%s/media' % a) |
|
f26f9ae9c599
test_changes_2 and test_bitbucket_issue_124
Sebastien Jodogne <s.jodogne@gmail.com>
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diff
changeset
|
4512 self.assertEqual(2, len(z.namelist())) |
|
207
a515eec74078
test_invalid_findscp
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
202
diff
changeset
|
4513 |
|
a515eec74078
test_invalid_findscp
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
202
diff
changeset
|
4514 |
|
a515eec74078
test_invalid_findscp
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
202
diff
changeset
|
4515 def test_invalid_findscp(self): |
|
a515eec74078
test_invalid_findscp
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
202
diff
changeset
|
4516 UploadInstance(_REMOTE, 'DummyCT.dcm') |
|
a515eec74078
test_invalid_findscp
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
202
diff
changeset
|
4517 findscu = CallFindScu([ '-S', '-k', '8,52=IMAGE', '-k', '8,16', '-k', '2,2' ]) |
|
a515eec74078
test_invalid_findscp
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
202
diff
changeset
|
4518 self.assertEqual(0, len(re.findall('\(0002,0002\)', findscu))) |
|
208
2444c9a7c422
test_bitbucket_issue_90
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4519 |
|
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4520 |
|
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4521 def test_bitbucket_issue_90(self): |
|
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4522 def CountDicomResults(sex): |
|
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4523 a = CallFindScu([ '-S', '-k', '8,52=STUDY', '-k', sex ]) |
|
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4524 return len(re.findall('\(0010,0040\)', a)) |
|
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4525 |
|
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diff
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|
4526 def CountRestResults(sex): |
|
2444c9a7c422
test_bitbucket_issue_90
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parents:
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diff
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4527 a = DoPost(_REMOTE, '/tools/find', |
|
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diff
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4528 { 'Level' : 'Study', 'Query' : { 'PatientSex' : sex } }) |
|
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4529 return len(a) |
|
2444c9a7c422
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diff
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|
4530 |
|
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diff
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|
4531 # Just like the "CR000000.dcm" of the issue, the test image |
|
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diff
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4532 # "DummyCT.dcm" has the tag PatientSex (0010,0040) unset |
|
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diff
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|
4533 UploadInstance(_REMOTE, 'DummyCT.dcm') |
|
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|
4534 |
|
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diff
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4535 # Test that the behavior of DICOM vs. REST API is consistent on missing tags |
|
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diff
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|
4536 |
|
2444c9a7c422
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diff
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|
4537 # In wildcard constraints, the patient sex must be set for a match to occur |
|
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diff
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4538 self.assertEqual(0, CountDicomResults('PatientSex=*')) |
|
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4539 self.assertEqual(0, CountRestResults('*')) |
|
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4540 |
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diff
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|
4541 # In single-valued constraints, the patient sex must be set |
|
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4542 self.assertEqual(0, CountDicomResults('PatientSex=F')) |
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4543 self.assertEqual(0, CountDicomResults('PatientSex=M')) |
|
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4544 self.assertEqual(0, CountRestResults('F')) |
|
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4545 self.assertEqual(0, CountRestResults('M')) |
|
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4546 |
|
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4547 # Empty constraints are only used to ask the actual value of |
|
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4548 # the tag to be added to the *answer*. The tag should not used |
|
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4549 # as a filter in such a situation. |
|
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4550 self.assertEqual(1, CountDicomResults('PatientSex')) |
|
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|
4551 self.assertEqual(1, CountDicomResults('PatientSex=')) |
|
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|
4552 self.assertEqual(1, CountRestResults('')) # This check fails on Orthanc <= 1.5.2 (issue 90) |
|
210
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diff
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|
4553 |
|
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diff
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|
4554 |
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test_rest_modalities_in_study
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|
4555 def test_rest_modalities_in_study(self): |
|
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4556 # Tests a regression that is present in Orthanc 1.5.2 and 1.5.3 |
|
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4557 # https://groups.google.com/d/msg/orthanc-users/7lZyG3wpx-M/uOXzAzVCFwAJ |
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|
4558 UploadInstance(_REMOTE, 'ColorTestImageJ.dcm') |
|
2c50c8f340c2
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|
4559 |
|
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test_rest_modalities_in_study
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diff
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|
4560 a = DoPost(_REMOTE, '/tools/find', { 'Level' : 'Study', |
|
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diff
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|
4561 'Query' : { 'ModalitiesInStudy' : 'US' }}) |
|
2c50c8f340c2
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diff
changeset
|
4562 self.assertEqual(0, len(a)) |
|
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|
4563 |
|
2c50c8f340c2
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208
diff
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|
4564 a = DoPost(_REMOTE, '/tools/find', { 'Level' : 'Study', |
|
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|
4565 'Query' : { 'ModalitiesInStudy' : 'US\\CT' }}) |
|
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|
4566 self.assertEqual(1, len(a)) |
|
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|
4567 |
|
2c50c8f340c2
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|
4568 a = DoPost(_REMOTE, '/tools/find', { 'Level' : 'Study', |
|
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diff
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|
4569 'Query' : { 'ModalitiesInStudy' : 'CT' }}) |
|
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|
4570 self.assertEqual(1, len(a)) |
| 211 | 4571 |
| 4572 | |
| 4573 def test_series_status(self): | |
| 4574 def HasCompletedInChanges(): | |
| 4575 for c in DoGet(_REMOTE, '/changes?limit=1000&since=0')['Changes']: | |
| 4576 if c['ChangeType'] == 'CompletedSeries': | |
| 4577 return True; | |
| 4578 | |
| 4579 return False | |
| 4580 | |
| 4581 UploadInstance(_REMOTE, 'Knix/Loc/IM-0001-0001.dcm') | |
| 4582 series = '8ea120d7-5057d919-837dfbcc-ccd04e0f-7f3a94aa' | |
| 4583 self.assertEqual('Unknown', DoGet(_REMOTE, '/series/%s' % series)['Status']) | |
| 4584 self.assertFalse(HasCompletedInChanges()) | |
| 4585 | |
| 4586 series = 'ce25ecb6-ed79d004-5ae43ca7-3fc89bc5-67511614' | |
| 4587 | |
| 4588 for i in range(3): | |
| 4589 UploadInstance(_REMOTE, 'Series/Lena-%d.dcm' % (i + 1)) | |
| 4590 self.assertEqual('Missing', DoGet(_REMOTE, '/series/%s' % series)['Status']) | |
| 4591 self.assertFalse(HasCompletedInChanges()) | |
| 4592 | |
| 4593 UploadInstance(_REMOTE, 'Series/Lena-4.dcm') | |
| 4594 self.assertEqual('Complete', DoGet(_REMOTE, '/series/%s' % series)['Status']) | |
| 4595 self.assertTrue(HasCompletedInChanges()) | |
| 4596 | |
| 4597 DoDelete(_REMOTE, '/changes') | |
| 4598 self.assertFalse(HasCompletedInChanges()) | |
| 4599 | |
| 4600 UploadInstance(_REMOTE, 'Series/Lena-5.dcm') | |
| 4601 self.assertEqual('Inconsistent', DoGet(_REMOTE, '/series/%s' % series)['Status']) | |
| 4602 self.assertFalse(HasCompletedInChanges()) | |
| 4603 | |
| 215 | 4604 |
| 4605 def test_dicomweb(self): | |
| 4606 def Compare(dicom, reference): | |
| 4607 a = UploadInstance(_REMOTE, dicom) ['ID'] | |
| 4608 b = DoGet(_REMOTE, '/instances/%s/file' % a, | |
| 4609 headers = { 'Accept' : 'application/dicom+json' }) | |
| 4610 with open(GetDatabasePath(reference), 'rb') as c: | |
| 4611 d = json.load(c) | |
| 220 | 4612 AssertAlmostEqualRecursive(self, d, b) |
| 215 | 4613 |
| 4614 Compare('DummyCT.dcm', 'DummyCT.json') | |
| 4615 Compare('MarekLatin2.dcm', 'MarekLatin2.json') | |
| 4616 Compare('HierarchicalAnonymization/StructuredReports/IM0', | |
| 4617 'HierarchicalAnonymization/StructuredReports/IM0.json') | |
| 217 | 4618 |
| 4619 | |
| 4620 def test_issue_95_encodings(self): | |
| 319 | 4621 # https://bugs.orthanc-server.com/show_bug.cgi?id=95 |
| 217 | 4622 # Check out image: "../Database/Encodings/DavidClunie/charsettests.screenshot.png" |
| 4623 | |
| 4624 # Very useful tool: "file2" from package "file-kanji" | |
| 4625 | |
| 4626 def GetPatientName(dicom): | |
| 4627 i = UploadInstance(_REMOTE, dicom) ['ID'] | |
| 4628 j = DoGet(_REMOTE, '/instances/%s/tags?simplify' % i) | |
| 4629 return j['PatientName'] | |
| 4630 | |
| 4631 def ComparePatientName(name, dicom): | |
| 4632 self.assertEqual(name, GetPatientName(dicom)) | |
| 4633 | |
| 4634 # gdcmraw -t 10,10 -i SCSFREN -o /tmp/tag && uconv -f ISO-IR-100 -t UTF-8 /tmp/tag && echo | |
| 4635 ComparePatientName(u'Buc^Jérôme', 'Encodings/DavidClunie/SCSFREN') | |
| 4636 | |
| 4637 # gdcmraw -t 10,10 -i SCSI2 -o /tmp/tag && uconv -f KOREAN -t UTF-8 /tmp/tag && echo | |
| 4638 ComparePatientName(u'Hong^Gildong=洪^吉洞=홍^길동', 'Encodings/DavidClunie/SCSI2') # Since Orthanc 1.5.5 | |
| 4639 | |
| 4640 # gdcmraw -t 10,10 -i SCSX2 -o /tmp/tag && uconv -f GB18030 -t UTF-8 /tmp/tag && echo | |
| 4641 ComparePatientName(u'Wang^XiaoDong=王^小东=', 'Encodings/DavidClunie/SCSX2') | |
| 4642 | |
| 4643 # gdcmraw -t 10,10 -i SCSX1 -o /tmp/tag && cat /tmp/tag && echo | |
| 4644 ComparePatientName(u'Wang^XiaoDong=王^小東=', 'Encodings/DavidClunie/SCSX1') | |
| 4645 | |
| 4646 # gdcmraw -t 10,10 -i SCSH31 -o /tmp/tag && uconv -f JIS -t UTF-8 /tmp/tag && echo | |
| 4647 ComparePatientName(u'Yamada^Tarou=山田^太郎=やまだ^たろう', 'Encodings/DavidClunie/SCSH31') | |
| 4648 | |
| 4649 # gdcmraw -t 10,10 -i SCSGERM -o /tmp/tag && uconv -f ISO-IR-100 -t UTF-8 /tmp/tag && echo | |
| 4650 ComparePatientName(u'Äneas^Rüdiger', 'Encodings/DavidClunie/SCSGERM') | |
| 4651 | |
| 4652 # gdcmraw -t 10,10 -i SCSGREEK -o /tmp/tag && uconv -f ISO-IR-126 -t UTF-8 /tmp/tag && echo | |
| 4653 ComparePatientName(u'Διονυσιος', 'Encodings/DavidClunie/SCSGREEK') | |
| 4654 | |
| 4655 # gdcmraw -t 10,10 -i SCSRUSS -o /tmp/tag && uconv -f ISO-IR-144 -t UTF-8 /tmp/tag && echo | |
| 4656 ComparePatientName(u'Люкceмбypг', 'Encodings/DavidClunie/SCSRUSS') | |
| 4657 | |
| 4658 # gdcmraw -t 10,10 -i SCSHBRW -o /tmp/tag && uconv -f ISO-IR-138 -t UTF-8 /tmp/tag && echo | |
| 4659 # NB: Hebrew is a right-to-left encoding, copying/pasting from | |
| 4660 # Linux console into Emacs automatically reverse the string | |
| 4661 ComparePatientName(u'שרון^דבורה', 'Encodings/DavidClunie/SCSHBRW') | |
| 4662 | |
| 4663 # gdcmraw -t 10,10 -i SCSARAB -o /tmp/tag && uconv -f ISO-IR-127 -t UTF-8 /tmp/tag && echo | |
| 4664 # NB: Right-to-left as for Hebrew (SCSHBRW), and the Ubuntu console can't display such | |
| 4665 # characters by default, but copy/paste works with Emacs | |
| 4666 ComparePatientName(u'قباني^لنزار', 'Encodings/DavidClunie/SCSARAB') | |
| 4667 | |
| 4668 # SCSH32: This SpecificCharacterSet is composed of 2 | |
| 4669 # codepages: "ISO 2022 IR 13" (i.e. "SHIFT_JIS") until the | |
| 4670 # first equal, then "ISO 2022 IR 87" (i.e. "JIS") for the | |
| 4671 # remainer. Orthanc only takes into consideration the first | |
| 4672 # codepage: This is a limitation. | |
| 4673 # gdcmraw -t 10,10 -i SCSH32 -o /tmp/tag && cut -d '=' -f 1 /tmp/tag | uconv -f SHIFT_JIS -t UTF-8 | |
| 4674 self.assertTrue(GetPatientName('Encodings/DavidClunie/SCSH32').startswith(u'ﾔﾏﾀﾞ^ﾀﾛｳ=')) | |
|
218
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4675 |
|
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|
4676 |
|
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diff
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|
4677 def test_findscu_missing_tags(self): |
|
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diff
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|
4678 # dcmodify -e Rows DummyCTInvalidRows.dcm -gst -gse -gin |
|
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diff
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|
4679 UploadInstance(_REMOTE, 'DummyCT.dcm') |
|
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diff
changeset
|
4680 UploadInstance(_REMOTE, 'DummyCTInvalidRows.dcm') |
|
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diff
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|
4681 |
|
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test_findscu_missing_tags
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diff
changeset
|
4682 i = CallFindScu([ '-k', '0008,0052=IMAGES', '-k', 'Rows', '-k', 'PatientName' ]) |
|
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diff
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|
4683 |
|
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diff
changeset
|
4684 # We have 2 instances... |
|
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diff
changeset
|
4685 patientNames = re.findall('\(0010,0010\).*?\[(.*?)\]', i) |
|
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diff
changeset
|
4686 self.assertEqual(2, len(patientNames)) |
|
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diff
changeset
|
4687 self.assertEqual('KNIX', patientNames[0]) |
|
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diff
changeset
|
4688 self.assertEqual('KNIX', patientNames[1]) |
|
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diff
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|
4689 |
|
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217
diff
changeset
|
4690 # ...but only 1 value for the "Rows" tag |
|
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217
diff
changeset
|
4691 rows = re.findall('\(0028,0010\) US ([0-9]+)', i) |
|
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diff
changeset
|
4692 self.assertEqual(1, len(rows)) |
|
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217
diff
changeset
|
4693 self.assertEqual('512', rows[0]) |
|
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4694 |
|
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diff
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|
4695 |
|
00e5aeea33dd
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diff
changeset
|
4696 |
|
00e5aeea33dd
test_bitbucket_issue_131
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diff
changeset
|
4697 def test_bitbucket_issue_131(self): |
|
00e5aeea33dd
test_bitbucket_issue_131
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diff
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|
4698 # "Orthanc PACS silently fails to C-MOVE due to duplicate |
|
00e5aeea33dd
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diff
changeset
|
4699 # StudyInstanceUID in it's database." |
| 319 | 4700 # https://bugs.orthanc-server.com/show_bug.cgi?id=131 |
|
219
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218
diff
changeset
|
4701 |
|
00e5aeea33dd
test_bitbucket_issue_131
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diff
changeset
|
4702 # Insert 2 instances, with the same StudyInstanceUID, but with |
|
00e5aeea33dd
test_bitbucket_issue_131
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diff
changeset
|
4703 # different patient IDs. Orthanc will create 2 distincts |
|
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test_bitbucket_issue_131
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diff
changeset
|
4704 # patients, and the hierarchy of resources above the two |
|
00e5aeea33dd
test_bitbucket_issue_131
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diff
changeset
|
4705 # instances will be fully disjoint. |
|
00e5aeea33dd
test_bitbucket_issue_131
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diff
changeset
|
4706 UploadInstance(_REMOTE, 'PatientIdsCollision/Issue131-a.dcm') |
|
00e5aeea33dd
test_bitbucket_issue_131
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parents:
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diff
changeset
|
4707 UploadInstance(_REMOTE, 'PatientIdsCollision/Issue131-b.dcm') |
|
00e5aeea33dd
test_bitbucket_issue_131
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diff
changeset
|
4708 |
|
00e5aeea33dd
test_bitbucket_issue_131
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diff
changeset
|
4709 self.assertEqual(2, len(DoGet(_REMOTE, '/patients'))) |
|
00e5aeea33dd
test_bitbucket_issue_131
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diff
changeset
|
4710 self.assertEqual(2, len(DoGet(_REMOTE, '/studies'))) |
|
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test_bitbucket_issue_131
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diff
changeset
|
4711 |
|
00e5aeea33dd
test_bitbucket_issue_131
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diff
changeset
|
4712 a = DoPost(_REMOTE, '/modalities/self/query', { |
|
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test_bitbucket_issue_131
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diff
changeset
|
4713 'Level' : 'Study', |
|
00e5aeea33dd
test_bitbucket_issue_131
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diff
changeset
|
4714 'Query' : {"PatientID": "A" }})['ID'] |
|
00e5aeea33dd
test_bitbucket_issue_131
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218
diff
changeset
|
4715 |
|
00e5aeea33dd
test_bitbucket_issue_131
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diff
changeset
|
4716 # 1 study is matched |
|
00e5aeea33dd
test_bitbucket_issue_131
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diff
changeset
|
4717 self.assertEqual(1, len(DoGet(_REMOTE, '/queries/%s/answers' % a))) |
|
00e5aeea33dd
test_bitbucket_issue_131
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diff
changeset
|
4718 |
|
00e5aeea33dd
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diff
changeset
|
4719 self.assertEqual(0, len(DoGet(_LOCAL, '/instances'))) |
| 220 | 4720 WaitAllNewJobsDone(_REMOTE, lambda: DoPost |
| 4721 (_REMOTE, '/queries/%s/retrieve' % a, | |
| 4722 '{"TargetAet":"ORTHANCTEST","Synchronous":false}')) | |
|
219
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test_bitbucket_issue_131
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218
diff
changeset
|
4723 |
|
00e5aeea33dd
test_bitbucket_issue_131
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218
diff
changeset
|
4724 # The two studies are matched, as we made the request at the |
|
00e5aeea33dd
test_bitbucket_issue_131
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diff
changeset
|
4725 # Study level, thus the shared StudyInstanceUID is used as the key |
|
00e5aeea33dd
test_bitbucket_issue_131
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diff
changeset
|
4726 self.assertEqual(2, len(DoGet(_LOCAL, '/instances'))) |
|
00e5aeea33dd
test_bitbucket_issue_131
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218
diff
changeset
|
4727 |
|
00e5aeea33dd
test_bitbucket_issue_131
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218
diff
changeset
|
4728 |
|
00e5aeea33dd
test_bitbucket_issue_131
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diff
changeset
|
4729 # Match the 2 studies |
|
00e5aeea33dd
test_bitbucket_issue_131
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diff
changeset
|
4730 a = DoPost(_REMOTE, '/modalities/self/query', { |
|
00e5aeea33dd
test_bitbucket_issue_131
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parents:
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diff
changeset
|
4731 'Level' : 'Study', |
|
00e5aeea33dd
test_bitbucket_issue_131
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218
diff
changeset
|
4732 'Query' : {"StudyInstanceUID": "2.25.123" }})['ID'] |
|
00e5aeea33dd
test_bitbucket_issue_131
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diff
changeset
|
4733 self.assertEqual(2, len(DoGet(_REMOTE, '/queries/%s/answers' % a))) |
|
00e5aeea33dd
test_bitbucket_issue_131
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diff
changeset
|
4734 DropOrthanc(_LOCAL) |
|
00e5aeea33dd
test_bitbucket_issue_131
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diff
changeset
|
4735 self.assertEqual(0, len(DoGet(_LOCAL, '/instances'))) |
| 220 | 4736 WaitAllNewJobsDone(_REMOTE, lambda: DoPost |
| 4737 (_REMOTE, '/queries/%s/retrieve' % a, | |
| 4738 '{"TargetAet":"ORTHANCTEST","Synchronous":false}')) | |
|
219
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test_bitbucket_issue_131
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diff
changeset
|
4739 self.assertEqual(2, len(DoGet(_LOCAL, '/instances'))) |
|
00e5aeea33dd
test_bitbucket_issue_131
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diff
changeset
|
4740 |
|
00e5aeea33dd
test_bitbucket_issue_131
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218
diff
changeset
|
4741 |
|
00e5aeea33dd
test_bitbucket_issue_131
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218
diff
changeset
|
4742 # Same test, at the patient level => only 1 instance is transfered |
|
00e5aeea33dd
test_bitbucket_issue_131
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diff
changeset
|
4743 a = DoPost(_REMOTE, '/modalities/self/query', { |
|
00e5aeea33dd
test_bitbucket_issue_131
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218
diff
changeset
|
4744 'Level' : 'Patient', |
|
00e5aeea33dd
test_bitbucket_issue_131
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parents:
218
diff
changeset
|
4745 'Query' : {"PatientID": "A" }})['ID'] |
|
00e5aeea33dd
test_bitbucket_issue_131
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
218
diff
changeset
|
4746 self.assertEqual(1, len(DoGet(_REMOTE, '/queries/%s/answers' % a))) |
|
00e5aeea33dd
test_bitbucket_issue_131
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parents:
218
diff
changeset
|
4747 DropOrthanc(_LOCAL) |
|
00e5aeea33dd
test_bitbucket_issue_131
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parents:
218
diff
changeset
|
4748 self.assertEqual(0, len(DoGet(_LOCAL, '/instances'))) |
| 220 | 4749 WaitAllNewJobsDone(_REMOTE, lambda: DoPost |
| 4750 (_REMOTE, '/queries/%s/retrieve' % a, | |
| 4751 '{"TargetAet":"ORTHANCTEST","Synchronous":false}')) | |
|
219
00e5aeea33dd
test_bitbucket_issue_131
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parents:
218
diff
changeset
|
4752 self.assertEqual(1, len(DoGet(_LOCAL, '/instances'))) |
|
00e5aeea33dd
test_bitbucket_issue_131
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parents:
218
diff
changeset
|
4753 |
|
00e5aeea33dd
test_bitbucket_issue_131
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
218
diff
changeset
|
4754 |
|
00e5aeea33dd
test_bitbucket_issue_131
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parents:
218
diff
changeset
|
4755 # Same test, at the series level => only 1 instance is transfered |
|
00e5aeea33dd
test_bitbucket_issue_131
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
218
diff
changeset
|
4756 a = DoPost(_REMOTE, '/modalities/self/query', { |
|
00e5aeea33dd
test_bitbucket_issue_131
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
218
diff
changeset
|
4757 'Level' : 'Series', |
|
00e5aeea33dd
test_bitbucket_issue_131
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
218
diff
changeset
|
4758 'Query' : {"PatientID": "A" }})['ID'] |
|
00e5aeea33dd
test_bitbucket_issue_131
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
218
diff
changeset
|
4759 self.assertEqual(1, len(DoGet(_REMOTE, '/queries/%s/answers' % a))) |
|
00e5aeea33dd
test_bitbucket_issue_131
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
218
diff
changeset
|
4760 DropOrthanc(_LOCAL) |
|
00e5aeea33dd
test_bitbucket_issue_131
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
218
diff
changeset
|
4761 self.assertEqual(0, len(DoGet(_LOCAL, '/instances'))) |
| 220 | 4762 WaitAllNewJobsDone(_REMOTE, lambda: DoPost |
| 4763 (_REMOTE, '/queries/%s/retrieve' % a, | |
| 4764 '{"TargetAet":"ORTHANCTEST","Synchronous":false}')) | |
|
219
00e5aeea33dd
test_bitbucket_issue_131
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
218
diff
changeset
|
4765 self.assertEqual(1, len(DoGet(_LOCAL, '/instances'))) |
|
00e5aeea33dd
test_bitbucket_issue_131
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
218
diff
changeset
|
4766 |
|
233
ce0b19a2c807
test_bitbucket_issue_136
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
231
diff
changeset
|
4767 |
|
ce0b19a2c807
test_bitbucket_issue_136
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
231
diff
changeset
|
4768 def test_bitbucket_issue_136(self): |
|
ce0b19a2c807
test_bitbucket_issue_136
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
231
diff
changeset
|
4769 UploadInstance(_REMOTE, 'Issue137.dcm') |
|
ce0b19a2c807
test_bitbucket_issue_136
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
231
diff
changeset
|
4770 i = CallFindScu([ '-k', '0008,0052=STUDY', '-k', '0010,0010', '-k', '0028,0010', '-k', '0040,0275' ]) |
|
ce0b19a2c807
test_bitbucket_issue_136
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
231
diff
changeset
|
4771 patientNames = re.findall('\(0010,0010\).*?\[(.*?)\]', i) |
|
ce0b19a2c807
test_bitbucket_issue_136
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
231
diff
changeset
|
4772 self.assertEqual(1, len(patientNames)) |
|
ce0b19a2c807
test_bitbucket_issue_136
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
231
diff
changeset
|
4773 self.assertEqual('John Doe', patientNames[0]) |
|
234
93cd4fdd4a67
test_anonymize_relationships_4
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
233
diff
changeset
|
4774 |
|
93cd4fdd4a67
test_anonymize_relationships_4
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
233
diff
changeset
|
4775 |
|
93cd4fdd4a67
test_anonymize_relationships_4
Sebastien Jodogne <s.jodogne@gmail.com>
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233
diff
changeset
|
4776 def test_anonymize_relationships_4(self): |
|
93cd4fdd4a67
test_anonymize_relationships_4
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233
diff
changeset
|
4777 # https://groups.google.com/d/msg/orthanc-users/UkcsqyTpszE/bXUpzU0vAAAJ |
|
93cd4fdd4a67
test_anonymize_relationships_4
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parents:
233
diff
changeset
|
4778 sr1 = UploadInstance(_REMOTE, 'HierarchicalAnonymization/2019-03-28/CR000000.dcm')['ID'] |
|
93cd4fdd4a67
test_anonymize_relationships_4
Sebastien Jodogne <s.jodogne@gmail.com>
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233
diff
changeset
|
4779 mr1 = UploadInstance(_REMOTE, 'HierarchicalAnonymization/2019-03-28/PR000000.dcm')['ID'] |
|
93cd4fdd4a67
test_anonymize_relationships_4
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233
diff
changeset
|
4780 study = '0c923249-d52121a9-2b7167f7-6b85534f-0943697e' |
|
93cd4fdd4a67
test_anonymize_relationships_4
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233
diff
changeset
|
4781 |
|
93cd4fdd4a67
test_anonymize_relationships_4
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233
diff
changeset
|
4782 anonymized = DoPost(_REMOTE, '/studies/%s/anonymize' % study, '{}', |
|
93cd4fdd4a67
test_anonymize_relationships_4
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diff
changeset
|
4783 'application/json')['ID'] |
|
93cd4fdd4a67
test_anonymize_relationships_4
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diff
changeset
|
4784 series = DoGet(_REMOTE, '/studies/%s/series' % anonymized) |
|
93cd4fdd4a67
test_anonymize_relationships_4
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diff
changeset
|
4785 self.assertEqual(2, len(series)) |
|
93cd4fdd4a67
test_anonymize_relationships_4
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diff
changeset
|
4786 |
|
93cd4fdd4a67
test_anonymize_relationships_4
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233
diff
changeset
|
4787 cr = list(filter(lambda x: x['MainDicomTags']['Modality'] == 'CR', series)) |
|
93cd4fdd4a67
test_anonymize_relationships_4
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diff
changeset
|
4788 pr = list(filter(lambda x: x['MainDicomTags']['Modality'] == 'PR', series)) |
|
93cd4fdd4a67
test_anonymize_relationships_4
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diff
changeset
|
4789 self.assertEqual(1, len(cr)) |
|
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test_anonymize_relationships_4
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diff
changeset
|
4790 self.assertEqual(1, len(pr)) |
|
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test_anonymize_relationships_4
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diff
changeset
|
4791 self.assertEqual(1, len(cr[0]['Instances'])) |
|
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test_anonymize_relationships_4
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diff
changeset
|
4792 self.assertEqual(1, len(pr[0]['Instances'])) |
|
93cd4fdd4a67
test_anonymize_relationships_4
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diff
changeset
|
4793 |
|
93cd4fdd4a67
test_anonymize_relationships_4
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diff
changeset
|
4794 crinstance = DoGet(_REMOTE, '/instances/%s' % cr[0]['Instances'][0]) |
|
93cd4fdd4a67
test_anonymize_relationships_4
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diff
changeset
|
4795 tags = DoGet(_REMOTE, '/instances/%s/tags?short' % pr[0]['Instances'][0]) |
|
93cd4fdd4a67
test_anonymize_relationships_4
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diff
changeset
|
4796 |
|
93cd4fdd4a67
test_anonymize_relationships_4
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diff
changeset
|
4797 self.assertEqual(tags['0008,1115'][0]['0008,1140'][0]['0008,1155'], |
|
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test_anonymize_relationships_4
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diff
changeset
|
4798 crinstance['MainDicomTags']['SOPInstanceUID']) |
|
93cd4fdd4a67
test_anonymize_relationships_4
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diff
changeset
|
4799 self.assertEqual(tags['0008,1115'][0]['0008,1140'][0]['0008,1150'], |
|
93cd4fdd4a67
test_anonymize_relationships_4
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diff
changeset
|
4800 '1.2.840.10008.5.1.4.1.1.1') # SOP class for CR Image Storage |
|
93cd4fdd4a67
test_anonymize_relationships_4
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diff
changeset
|
4801 |
|
93cd4fdd4a67
test_anonymize_relationships_4
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diff
changeset
|
4802 # This fails on Orthanc <= 1.5.6 |
|
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test_anonymize_relationships_4
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diff
changeset
|
4803 self.assertEqual(tags['0008,1115'][0]['0020,000e'], |
|
93cd4fdd4a67
test_anonymize_relationships_4
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diff
changeset
|
4804 cr[0]['MainDicomTags']['SeriesInstanceUID']) |
|
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4805 |
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4806 |
|
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4807 def test_anonymize_relationships_5(self): |
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4808 ct1 = UploadInstance(_REMOTE, 'HierarchicalAnonymization/RTH/CT01.dcm') |
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4809 rt1 = UploadInstance(_REMOTE, 'HierarchicalAnonymization/RTH/RT.dcm') |
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4810 oStudyId = ct1['ParentStudy'] |
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4811 oCtInstanceId = ct1['ID'] |
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4812 oRtInstanceId = rt1['ID'] |
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4813 |
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4814 oCtTags = DoGet(_REMOTE, '/instances/%s/tags?simplify' % oCtInstanceId) |
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4815 oRtTags = DoGet(_REMOTE, '/instances/%s/tags?simplify' % oRtInstanceId) |
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4816 |
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4817 # first validate the relationships in the source data |
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4818 oStudyUID = oCtTags['StudyInstanceUID'] |
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4819 oRtSeriesUID = oRtTags['SeriesInstanceUID'] |
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4820 oRtInstanceUID = oRtTags['SOPInstanceUID'] |
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4821 oRtFrameOfReferenceUID = oRtTags['ReferencedFrameOfReferenceSequence'][0]['FrameOfReferenceUID'] |
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4822 oCtSeriesUID = oCtTags['SeriesInstanceUID'] |
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4823 oCtInstanceUID = oCtTags['SOPInstanceUID'] |
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4824 oCtFrameOfReferenceUID = oCtTags['FrameOfReferenceUID'] |
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4825 |
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4826 oContourSequenceCount = len(oRtTags['ROIContourSequence'][0]['ContourSequence']) |
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4827 self.assertEqual(oCtFrameOfReferenceUID, oRtFrameOfReferenceUID) |
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4828 self.assertEqual(oStudyUID, oRtTags['ReferencedFrameOfReferenceSequence'][0]['RTReferencedStudySequence'][0]['ReferencedSOPInstanceUID']) |
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4829 self.assertEqual(oCtSeriesUID, oRtTags['ReferencedFrameOfReferenceSequence'][0]['RTReferencedStudySequence'][0]['RTReferencedSeriesSequence'][0]['SeriesInstanceUID']) |
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4830 self.assertEqual(oCtInstanceUID, oRtTags['ReferencedFrameOfReferenceSequence'][0]['RTReferencedStudySequence'][0]['RTReferencedSeriesSequence'][0]['ContourImageSequence'][0]['ReferencedSOPInstanceUID']) |
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4831 self.assertEqual(oCtInstanceUID, oRtTags['ROIContourSequence'][0]['ContourSequence'][oContourSequenceCount-1]['ContourImageSequence'][0]['ReferencedSOPInstanceUID']) |
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4832 |
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4833 ### anonymize |
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4834 |
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4835 aStudyId = DoPost(_REMOTE, '/studies/%s/anonymize' % oStudyId, '{}', |
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4836 'application/json')['ID'] |
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4837 |
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4838 ### validate |
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4839 |
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4840 aSeries = DoGet(_REMOTE, '/studies/%s/series' % aStudyId) |
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4841 self.assertEqual(2, len(aSeries)) |
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4842 |
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4843 aCt = list(filter(lambda x: x['MainDicomTags']['Modality'] == 'CT', aSeries)) |
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4844 aRt = list(filter(lambda x: x['MainDicomTags']['Modality'] == 'RTSTRUCT', aSeries)) |
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4845 aCtInstanceId = aCt[0]['Instances'][0] |
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4846 aRtInstanceId = aRt[0]['Instances'][0] |
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4847 aCtTags = DoGet(_REMOTE, '/instances/%s/tags?simplify' % aCtInstanceId) |
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4848 aRtTags = DoGet(_REMOTE, '/instances/%s/tags?simplify' % aRtInstanceId) |
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4849 |
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4850 # now validate the relationships in the anonymized data |
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4851 aStudyUID = aCtTags['StudyInstanceUID'] |
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4852 aRtSeriesUID = aRtTags['SeriesInstanceUID'] |
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4853 aRtInstanceUID = aRtTags['SOPInstanceUID'] |
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4854 aRtFrameOfReferenceUID = aRtTags['ReferencedFrameOfReferenceSequence'][0]['FrameOfReferenceUID'] |
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4855 aCtSeriesUID = aCtTags['SeriesInstanceUID'] |
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4856 aCtInstanceUID = aCtTags['SOPInstanceUID'] |
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4857 aCtFrameOfReferenceUID = aCtTags['FrameOfReferenceUID'] |
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4858 |
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4859 aContourSequenceCount = len(aRtTags['ROIContourSequence'][0]['ContourSequence']) |
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4860 # make sure all UIDs have been updated |
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4861 self.assertNotEqual(oStudyUID, aStudyUID) |
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4862 self.assertNotEqual(oRtSeriesUID, aRtSeriesUID) |
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4863 self.assertNotEqual(oRtInstanceUID, aRtInstanceUID) |
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4864 self.assertNotEqual(oRtFrameOfReferenceUID, aRtFrameOfReferenceUID) |
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4865 self.assertNotEqual(oCtSeriesUID, aCtSeriesUID) |
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4866 self.assertNotEqual(oCtInstanceUID, aCtInstanceUID) |
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4867 self.assertNotEqual(oCtFrameOfReferenceUID, aCtFrameOfReferenceUID) |
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4868 |
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4869 # validate the relationships |
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|
4870 self.assertEqual(oContourSequenceCount, aContourSequenceCount) |
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|
4871 self.assertEqual(aCtFrameOfReferenceUID, aRtFrameOfReferenceUID) |
| 256 | 4872 self.assertEqual(aStudyUID, aRtTags['ReferencedFrameOfReferenceSequence'][0]['RTReferencedStudySequence'][0]['ReferencedSOPInstanceUID']) |
| 4873 self.assertEqual(aCtSeriesUID, aRtTags['ReferencedFrameOfReferenceSequence'][0]['RTReferencedStudySequence'][0]['RTReferencedSeriesSequence'][0]['SeriesInstanceUID']) | |
|
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|
4874 self.assertEqual(aCtInstanceUID, aRtTags['ReferencedFrameOfReferenceSequence'][0]['RTReferencedStudySequence'][0]['RTReferencedSeriesSequence'][0]['ContourImageSequence'][0]['ReferencedSOPInstanceUID']) |
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|
4875 self.assertEqual(aCtInstanceUID, aRtTags['ROIContourSequence'][0]['ContourSequence'][aContourSequenceCount-1]['ContourImageSequence'][0]['ReferencedSOPInstanceUID']) |
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4876 |
| 256 | 4877 def test_anonymize_relationships_5b(self): |
| 4878 # same test as previous one but, this time, we force the StudyInstanceUID | |
| 4879 ct1 = UploadInstance(_REMOTE, 'HierarchicalAnonymization/RTH/CT01.dcm') | |
| 4880 rt1 = UploadInstance(_REMOTE, 'HierarchicalAnonymization/RTH/RT.dcm') | |
| 4881 oStudyId = ct1['ParentStudy'] | |
| 4882 oCtInstanceId = ct1['ID'] | |
| 4883 oRtInstanceId = rt1['ID'] | |
| 4884 | |
| 4885 oCtTags = DoGet(_REMOTE, '/instances/%s/tags?simplify' % oCtInstanceId) | |
| 4886 oRtTags = DoGet(_REMOTE, '/instances/%s/tags?simplify' % oRtInstanceId) | |
| 4887 | |
| 4888 ### anonymize while forcing the StudyInstanceUID | |
| 4889 | |
| 4890 aStudyId = DoPost(_REMOTE, '/studies/%s/anonymize' % oStudyId, '{ "Replace" : { "StudyInstanceUID" : "1.2.3.4"}, "Force": true}', | |
| 4891 'application/json')['ID'] | |
| 4892 | |
| 4893 ### validate | |
| 4894 | |
| 4895 aSeries = DoGet(_REMOTE, '/studies/%s/series' % aStudyId) | |
| 4896 self.assertEqual(2, len(aSeries)) | |
| 4897 | |
| 4898 aCt = list(filter(lambda x: x['MainDicomTags']['Modality'] == 'CT', aSeries)) | |
| 4899 aRt = list(filter(lambda x: x['MainDicomTags']['Modality'] == 'RTSTRUCT', aSeries)) | |
| 4900 aCtInstanceId = aCt[0]['Instances'][0] | |
| 4901 aRtInstanceId = aRt[0]['Instances'][0] | |
| 4902 aCtTags = DoGet(_REMOTE, '/instances/%s/tags?simplify' % aCtInstanceId) | |
| 4903 aRtTags = DoGet(_REMOTE, '/instances/%s/tags?simplify' % aRtInstanceId) | |
| 4904 | |
| 4905 self.assertEqual("1.2.3.4", aCtTags['StudyInstanceUID']) | |
| 4906 self.assertEqual("1.2.3.4", aRtTags['StudyInstanceUID']) | |
| 4907 self.assertEqual("1.2.3.4", aRtTags['ReferencedFrameOfReferenceSequence'][0]['RTReferencedStudySequence'][0]['ReferencedSOPInstanceUID']) | |
|
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4908 |
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4909 |
|
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|
4910 def test_bitbucket_issue_140(self): |
| 266 | 4911 # "Modifying private tags with REST API changes VR from LO to |
| 267 | 4912 # UN." This test fails if DCMTK <= 3.6.1 (e.g. fails on Ubuntu 16.04). |
| 319 | 4913 # https://bugs.orthanc-server.com/show_bug.cgi?id=140 |
|
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4914 source = UploadInstance(_REMOTE, 'Issue140.dcm') ['ID'] |
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|
4915 series = DoGet(_REMOTE, '/instances/%s' % source) ['ParentSeries'] |
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4916 |
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|
4917 target = DoPost(_REMOTE, '/series/%s/modify' % series, { |
| 266 | 4918 'Replace' : { 'RadioButton3' : 'aaabbbccc' }, |
| 4919 'PrivateCreator' : 'RadioLogic', # <= the trick is here | |
|
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4920 }, 'application/json') ['ID'] |
|
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4921 |
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|
4922 instances = DoGet(_REMOTE, '/series/%s/instances' % target) |
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4923 self.assertEqual(1, len(instances)) |
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4924 |
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|
4925 tags = DoGet(_REMOTE, '/instances/%s/tags' % source) |
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|
4926 t = tags['4321,1012'] |
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4927 self.assertEqual('String', t['Type']) |
|
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4928 self.assertEqual('RadioButton3', t['Name']) |
|
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4929 self.assertEqual('RadioLogic', t['PrivateCreator']) |
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|
4930 self.assertEqual('jklmopq', t['Value']) |
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4931 |
|
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|
4932 tags = DoGet(_REMOTE, '/instances/%s/tags' % instances[0]['ID']) |
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|
4933 t = tags['4321,1012'] |
| 327 | 4934 self.assertEqual('String', t['Type']) # This fails if DCMTK <= 3.6.1 |
|
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|
4935 self.assertEqual('RadioButton3', t['Name']) |
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|
4936 self.assertEqual('RadioLogic', t['PrivateCreator']) |
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4937 self.assertEqual('aaabbbccc', t['Value']) |
|
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4938 |
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4939 |
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4940 def test_find_normalize(self): |
|
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4941 # https://groups.google.com/d/msg/orthanc-users/AIwooGjsh94/YL28MNY4AgAJ |
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4942 |
|
2de1aec255ae
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Sebastien Jodogne <s.jodogne@gmail.com>
parents:
235
diff
changeset
|
4943 UploadInstance(_REMOTE, 'Knee/T1/IM-0001-0001.dcm') |
|
2de1aec255ae
test_find_normalize
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parents:
235
diff
changeset
|
4944 |
|
2de1aec255ae
test_find_normalize
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
235
diff
changeset
|
4945 a = DoPost(_REMOTE, '/modalities/self/query', { |
|
2de1aec255ae
test_find_normalize
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parents:
235
diff
changeset
|
4946 'Level' : 'Instance', |
|
2de1aec255ae
test_find_normalize
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235
diff
changeset
|
4947 'Query' : { 'Rows' : '42' } |
|
2de1aec255ae
test_find_normalize
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parents:
235
diff
changeset
|
4948 }) ['ID'] |
|
2de1aec255ae
test_find_normalize
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parents:
235
diff
changeset
|
4949 |
|
2de1aec255ae
test_find_normalize
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
235
diff
changeset
|
4950 b = DoGet(_REMOTE, '/queries/%s/answers?expand&simplify' % a) |
|
2de1aec255ae
test_find_normalize
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235
diff
changeset
|
4951 self.assertEqual(1, len(b)) |
|
2de1aec255ae
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parents:
235
diff
changeset
|
4952 self.assertFalse('Rows' in b[0]) |
|
2de1aec255ae
test_find_normalize
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
235
diff
changeset
|
4953 |
|
2de1aec255ae
test_find_normalize
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
235
diff
changeset
|
4954 a = DoPost(_REMOTE, '/modalities/self/query', { |
|
2de1aec255ae
test_find_normalize
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
235
diff
changeset
|
4955 'Level' : 'Instance', |
|
2de1aec255ae
test_find_normalize
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parents:
235
diff
changeset
|
4956 'Query' : { 'Rows' : '42' }, |
|
2de1aec255ae
test_find_normalize
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parents:
235
diff
changeset
|
4957 'Normalize' : False |
|
2de1aec255ae
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235
diff
changeset
|
4958 }) ['ID'] |
|
2de1aec255ae
test_find_normalize
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
235
diff
changeset
|
4959 |
|
2de1aec255ae
test_find_normalize
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
235
diff
changeset
|
4960 b = DoGet(_REMOTE, '/queries/%s/answers' % a) |
|
2de1aec255ae
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parents:
235
diff
changeset
|
4961 self.assertEqual(0, len(b)) |
|
2de1aec255ae
test_find_normalize
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parents:
235
diff
changeset
|
4962 |
|
2de1aec255ae
test_find_normalize
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
235
diff
changeset
|
4963 a = DoPost(_REMOTE, '/modalities/self/query', { |
|
2de1aec255ae
test_find_normalize
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parents:
235
diff
changeset
|
4964 'Level' : 'Instance', |
|
2de1aec255ae
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parents:
235
diff
changeset
|
4965 'Query' : { 'Rows' : '512' }, |
|
2de1aec255ae
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Sebastien Jodogne <s.jodogne@gmail.com>
parents:
235
diff
changeset
|
4966 'Normalize' : False |
|
2de1aec255ae
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parents:
235
diff
changeset
|
4967 }) ['ID'] |
|
2de1aec255ae
test_find_normalize
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
235
diff
changeset
|
4968 |
|
2de1aec255ae
test_find_normalize
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
235
diff
changeset
|
4969 b = DoGet(_REMOTE, '/queries/%s/answers?expand&simplify' % a) |
|
2de1aec255ae
test_find_normalize
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
235
diff
changeset
|
4970 self.assertEqual(1, len(b)) |
|
2de1aec255ae
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Sebastien Jodogne <s.jodogne@gmail.com>
parents:
235
diff
changeset
|
4971 self.assertTrue('Rows' in b[0]) |
|
2de1aec255ae
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parents:
235
diff
changeset
|
4972 self.assertEqual('512', b[0]['Rows']) |
| 237 | 4973 |
| 4974 a = DoPost(_REMOTE, '/modalities/self/query', { | |
| 4975 'Level' : 'Instance', | |
| 4976 'Query' : { 'Rows' : '' }, | |
| 4977 'Normalize' : False | |
| 4978 }) ['ID'] | |
| 4979 | |
| 4980 b = DoGet(_REMOTE, '/queries/%s/answers?expand&simplify' % a) | |
| 4981 self.assertEqual(1, len(b)) | |
| 4982 self.assertTrue('Rows' in b[0]) | |
| 4983 self.assertEqual('512', b[0]['Rows']) | |
| 4984 | |
| 4985 self.assertRaises(Exception, lambda: DoPost( | |
| 4986 _REMOTE, '/modalities/self/query', { | |
| 4987 'Level' : 'Instance', | |
| 4988 'Query' : { 'Rows' : '*' }, # Out-of-range value | |
| 4989 'Normalize' : False | |
| 4990 })) | |
|
243
cccf697a4e13
test_bitbucket_issue_141
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
237
diff
changeset
|
4991 |
|
cccf697a4e13
test_bitbucket_issue_141
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
237
diff
changeset
|
4992 |
|
cccf697a4e13
test_bitbucket_issue_141
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parents:
237
diff
changeset
|
4993 def test_bitbucket_issue_141(self): |
| 319 | 4994 # https://bugs.orthanc-server.com/show_bug.cgi?id=141 |
|
243
cccf697a4e13
test_bitbucket_issue_141
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
237
diff
changeset
|
4995 a = UploadInstance(_REMOTE, 'Issue141.dcm') ['ID'] |
|
cccf697a4e13
test_bitbucket_issue_141
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
237
diff
changeset
|
4996 study = '494c8037-b237f263-d8f15075-c8cb2280-daf39bd1' |
|
cccf697a4e13
test_bitbucket_issue_141
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
237
diff
changeset
|
4997 |
|
cccf697a4e13
test_bitbucket_issue_141
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
237
diff
changeset
|
4998 with open(GetDatabasePath('HelloWorld.pdf'), 'rb') as f: |
|
cccf697a4e13
test_bitbucket_issue_141
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
237
diff
changeset
|
4999 pdf = f.read() |
|
cccf697a4e13
test_bitbucket_issue_141
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
237
diff
changeset
|
5000 |
|
cccf697a4e13
test_bitbucket_issue_141
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
237
diff
changeset
|
5001 b = DoPost(_REMOTE, '/tools/create-dicom', { |
|
cccf697a4e13
test_bitbucket_issue_141
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
237
diff
changeset
|
5002 'Parent' : study, |
|
cccf697a4e13
test_bitbucket_issue_141
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
237
diff
changeset
|
5003 'Tags' : {}, |
|
cccf697a4e13
test_bitbucket_issue_141
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
237
diff
changeset
|
5004 'Content' : 'data:application/pdf;base64,' + base64.b64encode(pdf) |
|
cccf697a4e13
test_bitbucket_issue_141
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
237
diff
changeset
|
5005 }) ['ID'] |
|
cccf697a4e13
test_bitbucket_issue_141
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
237
diff
changeset
|
5006 |
|
cccf697a4e13
test_bitbucket_issue_141
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
237
diff
changeset
|
5007 tagsA = DoGet(_REMOTE, '/instances/%s/tags?short' % a) |
|
cccf697a4e13
test_bitbucket_issue_141
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
237
diff
changeset
|
5008 tagsB = DoGet(_REMOTE, '/instances/%s/tags?short' % b) |
|
cccf697a4e13
test_bitbucket_issue_141
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
237
diff
changeset
|
5009 self.assertEqual(tagsA['0008,0005'], tagsB['0008,0005']) |
|
cccf697a4e13
test_bitbucket_issue_141
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
237
diff
changeset
|
5010 self.assertEqual(tagsA['0008,1030'], tagsB['0008,1030']) |
|
247
1abdab0ba0e6
test_modifying_missing_patientid
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
243
diff
changeset
|
5011 |
|
1abdab0ba0e6
test_modifying_missing_patientid
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
243
diff
changeset
|
5012 |
|
1abdab0ba0e6
test_modifying_missing_patientid
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
243
diff
changeset
|
5013 def test_modifying_missing_patientid(self): |
|
1abdab0ba0e6
test_modifying_missing_patientid
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
243
diff
changeset
|
5014 # https://groups.google.com/d/msg/orthanc-users/aphG_h1AHVg/rfOTtTPTAgAJ |
|
1abdab0ba0e6
test_modifying_missing_patientid
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
243
diff
changeset
|
5015 UploadInstance(_REMOTE, '2019-06-17-VedranZdesic.dcm') |
|
1abdab0ba0e6
test_modifying_missing_patientid
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
243
diff
changeset
|
5016 DoPost(_REMOTE, '/studies/0c4aca1d-c107a241-6659d6aa-594c674a-a468b94a/modify', {}) |
| 262 | 5017 |
| 5018 | |
| 5019 def test_log_level(self): | |
| 319 | 5020 # https://bugs.orthanc-server.com/show_bug.cgi?id=65 |
| 262 | 5021 original = DoGet(_REMOTE, '/tools/log-level') |
| 5022 | |
| 5023 DoPut(_REMOTE, '/tools/log-level', 'default') | |
| 5024 self.assertEqual('default', DoGet(_REMOTE, '/tools/log-level')) | |
| 5025 DoGet(_REMOTE, '/system') | |
| 5026 | |
| 5027 DoPut(_REMOTE, '/tools/log-level', 'verbose') | |
| 5028 self.assertEqual('verbose', DoGet(_REMOTE, '/tools/log-level')) | |
| 5029 DoGet(_REMOTE, '/system') | |
| 5030 | |
| 5031 DoPut(_REMOTE, '/tools/log-level', 'trace') | |
| 5032 self.assertEqual('trace', DoGet(_REMOTE, '/tools/log-level')) | |
| 5033 DoGet(_REMOTE, '/system') | |
| 5034 | |
| 5035 self.assertRaises(Exception, lambda: DoPut(_REMOTE, '/tools/log-level', 'nope')) | |
| 5036 | |
| 5037 # Switch back to the original log level | |
| 5038 DoPut(_REMOTE, '/tools/log-level', original) | |
|
264
445f498bc1d4
test_upload_compressed
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
263
diff
changeset
|
5039 |
|
445f498bc1d4
test_upload_compressed
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
263
diff
changeset
|
5040 |
|
445f498bc1d4
test_upload_compressed
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
263
diff
changeset
|
5041 def test_upload_compressed(self): |
| 265 | 5042 # New in Orthanc 1.6.0 |
|
264
445f498bc1d4
test_upload_compressed
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
263
diff
changeset
|
5043 with open(GetDatabasePath('DummyCT.dcm.gz'), 'rb') as f: |
|
445f498bc1d4
test_upload_compressed
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
263
diff
changeset
|
5044 d = f.read() |
|
445f498bc1d4
test_upload_compressed
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
263
diff
changeset
|
5045 |
|
445f498bc1d4
test_upload_compressed
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
263
diff
changeset
|
5046 self.assertRaises(Exception, lambda: DoPost(_REMOTE, '/instances', d, 'application/dicom')) |
|
445f498bc1d4
test_upload_compressed
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
263
diff
changeset
|
5047 |
|
445f498bc1d4
test_upload_compressed
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
263
diff
changeset
|
5048 self.assertRaises(Exception, lambda: DoPost(_REMOTE, '/instances', d, 'application/dicom', |
|
445f498bc1d4
test_upload_compressed
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
263
diff
changeset
|
5049 headers = { 'Content-Encoding' : 'nope' })) |
|
445f498bc1d4
test_upload_compressed
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
263
diff
changeset
|
5050 |
|
445f498bc1d4
test_upload_compressed
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
263
diff
changeset
|
5051 a = DoPost(_REMOTE, '/instances', d, 'application/dicom', |
|
445f498bc1d4
test_upload_compressed
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
263
diff
changeset
|
5052 headers = { 'Content-Encoding' : 'gzip' }) |
|
445f498bc1d4
test_upload_compressed
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
263
diff
changeset
|
5053 self.assertEqual('66a662ce-7430e543-bad44d47-0dc5a943-ec7a538d', a['ID']) |
| 262 | 5054 |
| 5055 | |
|
263
a2719263fd04
test_study_series_find_inconsistency
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
262
diff
changeset
|
5056 def test_study_series_find_inconsistency(self): |
|
a2719263fd04
test_study_series_find_inconsistency
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
262
diff
changeset
|
5057 # https://groups.google.com/forum/#!topic/orthanc-users/bLv6Z11COy0 |
|
a2719263fd04
test_study_series_find_inconsistency
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
262
diff
changeset
|
5058 |
|
a2719263fd04
test_study_series_find_inconsistency
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
262
diff
changeset
|
5059 def CountAnswers(query): |
|
a2719263fd04
test_study_series_find_inconsistency
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
262
diff
changeset
|
5060 a = DoPost(_REMOTE, 'modalities/self/query', query) |
|
a2719263fd04
test_study_series_find_inconsistency
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
262
diff
changeset
|
5061 return len(DoGet(_REMOTE, '%s/answers' % a['Path'])) |
|
a2719263fd04
test_study_series_find_inconsistency
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
262
diff
changeset
|
5062 |
|
a2719263fd04
test_study_series_find_inconsistency
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
262
diff
changeset
|
5063 # This instance has "SeriesDescription" (0008,103e) tag, but no |
|
a2719263fd04
test_study_series_find_inconsistency
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
262
diff
changeset
|
5064 # "ProtocolName" (0018,1030). Both of those tags are part of |
|
a2719263fd04
test_study_series_find_inconsistency
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
262
diff
changeset
|
5065 # the "main DICOM tags" of Orthanc. |
|
a2719263fd04
test_study_series_find_inconsistency
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
262
diff
changeset
|
5066 UploadInstance(_REMOTE, 'Issue137.dcm') |
|
a2719263fd04
test_study_series_find_inconsistency
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
262
diff
changeset
|
5067 |
|
a2719263fd04
test_study_series_find_inconsistency
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
262
diff
changeset
|
5068 |
|
a2719263fd04
test_study_series_find_inconsistency
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
262
diff
changeset
|
5069 self.assertEqual(1, CountAnswers({ |
|
a2719263fd04
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Sebastien Jodogne <s.jodogne@gmail.com>
parents:
262
diff
changeset
|
5070 'Level' : 'Study', |
|
a2719263fd04
test_study_series_find_inconsistency
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
262
diff
changeset
|
5071 })) |
|
a2719263fd04
test_study_series_find_inconsistency
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
262
diff
changeset
|
5072 |
|
a2719263fd04
test_study_series_find_inconsistency
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
262
diff
changeset
|
5073 self.assertEqual(1, CountAnswers({ |
|
a2719263fd04
test_study_series_find_inconsistency
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
262
diff
changeset
|
5074 'Level' : 'Series', |
|
a2719263fd04
test_study_series_find_inconsistency
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
262
diff
changeset
|
5075 })) |
|
a2719263fd04
test_study_series_find_inconsistency
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
262
diff
changeset
|
5076 |
|
a2719263fd04
test_study_series_find_inconsistency
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
262
diff
changeset
|
5077 |
|
a2719263fd04
test_study_series_find_inconsistency
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
262
diff
changeset
|
5078 ## |
|
a2719263fd04
test_study_series_find_inconsistency
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
262
diff
changeset
|
5079 ## "SeriesDescription" is present, and has VR "CS" => wildcard is allowed |
|
a2719263fd04
test_study_series_find_inconsistency
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
changeset
|
5080 ## http://dicom.nema.org/medical/dicom/2019e/output/chtml/part04/sect_C.2.2.2.4.html |
|
a2719263fd04
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262
diff
changeset
|
5081 ## |
|
a2719263fd04
test_study_series_find_inconsistency
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
262
diff
changeset
|
5082 |
|
a2719263fd04
test_study_series_find_inconsistency
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
262
diff
changeset
|
5083 # At the study level, the "SeriesDescription" tag is not allowed, but |
|
a2719263fd04
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Sebastien Jodogne <s.jodogne@gmail.com>
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262
diff
changeset
|
5084 # is wiped out by the normalization |
|
a2719263fd04
test_study_series_find_inconsistency
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
262
diff
changeset
|
5085 self.assertEqual(0, CountAnswers({ |
|
a2719263fd04
test_study_series_find_inconsistency
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
262
diff
changeset
|
5086 'Level' : 'Study', |
|
a2719263fd04
test_study_series_find_inconsistency
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
262
diff
changeset
|
5087 'Query' : { |
|
a2719263fd04
test_study_series_find_inconsistency
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
262
diff
changeset
|
5088 'SeriesDescription' : 'NOPE' |
|
a2719263fd04
test_study_series_find_inconsistency
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
262
diff
changeset
|
5089 }, |
|
a2719263fd04
test_study_series_find_inconsistency
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
262
diff
changeset
|
5090 'Normalize' : False |
|
a2719263fd04
test_study_series_find_inconsistency
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
262
diff
changeset
|
5091 })) |
|
a2719263fd04
test_study_series_find_inconsistency
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
262
diff
changeset
|
5092 self.assertEqual(0, CountAnswers({ |
|
a2719263fd04
test_study_series_find_inconsistency
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
262
diff
changeset
|
5093 # This test fails on Orthanc <= 1.5.8 |
|
a2719263fd04
test_study_series_find_inconsistency
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
262
diff
changeset
|
5094 'Level' : 'Study', |
|
a2719263fd04
test_study_series_find_inconsistency
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
262
diff
changeset
|
5095 'Query' : { |
|
a2719263fd04
test_study_series_find_inconsistency
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
262
diff
changeset
|
5096 'SeriesDescription' : '*' # Wildcard matching => no match, as the tag is absent |
|
a2719263fd04
test_study_series_find_inconsistency
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
262
diff
changeset
|
5097 }, |
|
a2719263fd04
test_study_series_find_inconsistency
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
262
diff
changeset
|
5098 'Normalize' : False |
|
a2719263fd04
test_study_series_find_inconsistency
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
262
diff
changeset
|
5099 })) |
|
a2719263fd04
test_study_series_find_inconsistency
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
262
diff
changeset
|
5100 self.assertEqual(1, CountAnswers({ |
|
a2719263fd04
test_study_series_find_inconsistency
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
262
diff
changeset
|
5101 'Level' : 'Study', |
|
a2719263fd04
test_study_series_find_inconsistency
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
262
diff
changeset
|
5102 'Query' : { |
|
a2719263fd04
test_study_series_find_inconsistency
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
262
diff
changeset
|
5103 'SeriesDescription' : 'THIS^VALUE^IS^WIPED^OUT' |
|
a2719263fd04
test_study_series_find_inconsistency
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
262
diff
changeset
|
5104 }, |
|
a2719263fd04
test_study_series_find_inconsistency
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
262
diff
changeset
|
5105 'Normalize' : True |
|
a2719263fd04
test_study_series_find_inconsistency
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
262
diff
changeset
|
5106 })) |
|
a2719263fd04
test_study_series_find_inconsistency
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
262
diff
changeset
|
5107 self.assertEqual(1, CountAnswers({ |
|
a2719263fd04
test_study_series_find_inconsistency
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
262
diff
changeset
|
5108 'Level' : 'Study', |
|
a2719263fd04
test_study_series_find_inconsistency
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
262
diff
changeset
|
5109 'Query' : { |
|
a2719263fd04
test_study_series_find_inconsistency
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
262
diff
changeset
|
5110 'SeriesDescription' : '*' # Matches, as wiped out by the normalization |
|
a2719263fd04
test_study_series_find_inconsistency
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
262
diff
changeset
|
5111 }, |
|
a2719263fd04
test_study_series_find_inconsistency
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
262
diff
changeset
|
5112 'Normalize' : True |
|
a2719263fd04
test_study_series_find_inconsistency
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
262
diff
changeset
|
5113 })) |
|
a2719263fd04
test_study_series_find_inconsistency
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
262
diff
changeset
|
5114 |
|
a2719263fd04
test_study_series_find_inconsistency
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
262
diff
changeset
|
5115 for normalize in [ True, False ]: |
|
a2719263fd04
test_study_series_find_inconsistency
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
262
diff
changeset
|
5116 # At the series level, the "SeriesDescription" tag is allowed, and |
|
a2719263fd04
test_study_series_find_inconsistency
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
262
diff
changeset
|
5117 # normalization has no effect |
|
a2719263fd04
test_study_series_find_inconsistency
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
262
diff
changeset
|
5118 |
|
a2719263fd04
test_study_series_find_inconsistency
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
262
diff
changeset
|
5119 # "Universal matching" will match all entities, including |
|
a2719263fd04
test_study_series_find_inconsistency
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
262
diff
changeset
|
5120 # those with the missing tag |
|
a2719263fd04
test_study_series_find_inconsistency
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
262
diff
changeset
|
5121 # http://dicom.nema.org/medical/dicom/2019e/output/chtml/part04/sect_C.2.2.2.3.html |
|
a2719263fd04
test_study_series_find_inconsistency
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
262
diff
changeset
|
5122 self.assertEqual(1, CountAnswers({ |
|
a2719263fd04
test_study_series_find_inconsistency
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
262
diff
changeset
|
5123 'Level' : 'Series', |
|
a2719263fd04
test_study_series_find_inconsistency
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
262
diff
changeset
|
5124 'Query' : { |
|
a2719263fd04
test_study_series_find_inconsistency
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
262
diff
changeset
|
5125 'SeriesDescription' : '' # Universal matching |
|
a2719263fd04
test_study_series_find_inconsistency
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
262
diff
changeset
|
5126 }, |
|
a2719263fd04
test_study_series_find_inconsistency
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
262
diff
changeset
|
5127 'Normalize' : normalize, |
|
a2719263fd04
test_study_series_find_inconsistency
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
262
diff
changeset
|
5128 })) |
|
a2719263fd04
test_study_series_find_inconsistency
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
262
diff
changeset
|
5129 # "Universal matching" will match all entities, including |
|
a2719263fd04
test_study_series_find_inconsistency
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
262
diff
changeset
|
5130 # those with the missing tag |
|
a2719263fd04
test_study_series_find_inconsistency
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
262
diff
changeset
|
5131 # http://dicom.nema.org/medical/dicom/2019e/output/chtml/part04/sect_C.2.2.2.3.html |
|
a2719263fd04
test_study_series_find_inconsistency
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
262
diff
changeset
|
5132 self.assertEqual(1, CountAnswers({ |
|
a2719263fd04
test_study_series_find_inconsistency
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
262
diff
changeset
|
5133 'Level' : 'Series', |
|
a2719263fd04
test_study_series_find_inconsistency
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
262
diff
changeset
|
5134 'Query' : { |
|
a2719263fd04
test_study_series_find_inconsistency
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
262
diff
changeset
|
5135 'SeriesDescription' : '*' # Wildcard matching |
|
a2719263fd04
test_study_series_find_inconsistency
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
262
diff
changeset
|
5136 }, |
|
a2719263fd04
test_study_series_find_inconsistency
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
262
diff
changeset
|
5137 'Normalize' : normalize, |
|
a2719263fd04
test_study_series_find_inconsistency
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
262
diff
changeset
|
5138 })) |
|
a2719263fd04
test_study_series_find_inconsistency
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
262
diff
changeset
|
5139 self.assertEqual(1, CountAnswers({ |
|
a2719263fd04
test_study_series_find_inconsistency
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
262
diff
changeset
|
5140 'Level' : 'Series', |
|
a2719263fd04
test_study_series_find_inconsistency
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
262
diff
changeset
|
5141 'Query' : { |
|
a2719263fd04
test_study_series_find_inconsistency
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
262
diff
changeset
|
5142 'SeriesDescription' : '*model*' # The actual value is "STL model: intraop Report" |
|
a2719263fd04
test_study_series_find_inconsistency
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
262
diff
changeset
|
5143 }, |
|
a2719263fd04
test_study_series_find_inconsistency
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
262
diff
changeset
|
5144 'Normalize' : normalize, |
|
a2719263fd04
test_study_series_find_inconsistency
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
262
diff
changeset
|
5145 })) |
|
a2719263fd04
test_study_series_find_inconsistency
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
262
diff
changeset
|
5146 self.assertEqual(0, CountAnswers({ |
|
a2719263fd04
test_study_series_find_inconsistency
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
262
diff
changeset
|
5147 'Level' : 'Series', |
|
a2719263fd04
test_study_series_find_inconsistency
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
262
diff
changeset
|
5148 'Query' : { |
|
a2719263fd04
test_study_series_find_inconsistency
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
262
diff
changeset
|
5149 'SeriesDescription' : '*MISMATCHED^VALUE*' |
|
a2719263fd04
test_study_series_find_inconsistency
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
262
diff
changeset
|
5150 }, |
|
a2719263fd04
test_study_series_find_inconsistency
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
262
diff
changeset
|
5151 'Normalize' : normalize, |
|
a2719263fd04
test_study_series_find_inconsistency
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
262
diff
changeset
|
5152 })) |
|
a2719263fd04
test_study_series_find_inconsistency
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
262
diff
changeset
|
5153 |
|
a2719263fd04
test_study_series_find_inconsistency
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
262
diff
changeset
|
5154 # Universal matching matches any instance, even if the |
|
a2719263fd04
test_study_series_find_inconsistency
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
262
diff
changeset
|
5155 # query is at the study-level, and thus if "SeriesDescription" |
|
a2719263fd04
test_study_series_find_inconsistency
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
262
diff
changeset
|
5156 # makes no sense |
|
a2719263fd04
test_study_series_find_inconsistency
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
262
diff
changeset
|
5157 self.assertEqual(1, CountAnswers({ |
|
a2719263fd04
test_study_series_find_inconsistency
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
262
diff
changeset
|
5158 'Level' : 'Study', |
|
a2719263fd04
test_study_series_find_inconsistency
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
262
diff
changeset
|
5159 'Query' : { |
|
a2719263fd04
test_study_series_find_inconsistency
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
262
diff
changeset
|
5160 'SeriesDescription' : '' # Universal matching |
|
a2719263fd04
test_study_series_find_inconsistency
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
262
diff
changeset
|
5161 }, |
|
a2719263fd04
test_study_series_find_inconsistency
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
262
diff
changeset
|
5162 'Normalize' : normalize, |
|
a2719263fd04
test_study_series_find_inconsistency
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
262
diff
changeset
|
5163 })) |
|
a2719263fd04
test_study_series_find_inconsistency
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
262
diff
changeset
|
5164 |
|
a2719263fd04
test_study_series_find_inconsistency
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
262
diff
changeset
|
5165 |
|
a2719263fd04
test_study_series_find_inconsistency
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
262
diff
changeset
|
5166 |
|
a2719263fd04
test_study_series_find_inconsistency
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
262
diff
changeset
|
5167 ## |
|
a2719263fd04
test_study_series_find_inconsistency
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
262
diff
changeset
|
5168 ## "ProtocolName" is absent, and has VR "CS" => wildcard is allowed |
|
a2719263fd04
test_study_series_find_inconsistency
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
262
diff
changeset
|
5169 ## |
|
a2719263fd04
test_study_series_find_inconsistency
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
262
diff
changeset
|
5170 |
|
a2719263fd04
test_study_series_find_inconsistency
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
262
diff
changeset
|
5171 # At the study level, the "ProtocolName" tag is not allowed, but |
|
a2719263fd04
test_study_series_find_inconsistency
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
262
diff
changeset
|
5172 # is wiped out by the normalization |
|
a2719263fd04
test_study_series_find_inconsistency
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
262
diff
changeset
|
5173 self.assertEqual(0, CountAnswers({ |
|
a2719263fd04
test_study_series_find_inconsistency
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
262
diff
changeset
|
5174 'Level' : 'Study', |
|
a2719263fd04
test_study_series_find_inconsistency
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
262
diff
changeset
|
5175 'Query' : { |
|
a2719263fd04
test_study_series_find_inconsistency
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
262
diff
changeset
|
5176 'ProtocolName' : 'NOPE' |
|
a2719263fd04
test_study_series_find_inconsistency
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
262
diff
changeset
|
5177 }, |
|
a2719263fd04
test_study_series_find_inconsistency
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
262
diff
changeset
|
5178 'Normalize' : False |
|
a2719263fd04
test_study_series_find_inconsistency
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
262
diff
changeset
|
5179 })) |
|
a2719263fd04
test_study_series_find_inconsistency
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
262
diff
changeset
|
5180 self.assertEqual(0, CountAnswers({ |
|
a2719263fd04
test_study_series_find_inconsistency
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
262
diff
changeset
|
5181 'Level' : 'Study', |
|
a2719263fd04
test_study_series_find_inconsistency
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
262
diff
changeset
|
5182 'Query' : { |
|
a2719263fd04
test_study_series_find_inconsistency
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
262
diff
changeset
|
5183 'ProtocolName' : '*' # Wildcard matching => no match, as the tag is absent |
|
a2719263fd04
test_study_series_find_inconsistency
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
262
diff
changeset
|
5184 }, |
|
a2719263fd04
test_study_series_find_inconsistency
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
262
diff
changeset
|
5185 'Normalize' : False |
|
a2719263fd04
test_study_series_find_inconsistency
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
262
diff
changeset
|
5186 })) |
|
a2719263fd04
test_study_series_find_inconsistency
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
262
diff
changeset
|
5187 self.assertEqual(1, CountAnswers({ |
|
a2719263fd04
test_study_series_find_inconsistency
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
262
diff
changeset
|
5188 'Level' : 'Study', |
|
a2719263fd04
test_study_series_find_inconsistency
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
262
diff
changeset
|
5189 'Query' : { |
|
a2719263fd04
test_study_series_find_inconsistency
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
262
diff
changeset
|
5190 'ProtocolName' : 'THIS^VALUE^IS^WIPED^OUT' |
|
a2719263fd04
test_study_series_find_inconsistency
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
262
diff
changeset
|
5191 }, |
|
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5192 'Normalize' : True |
|
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|
5193 })) |
|
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5194 self.assertEqual(1, CountAnswers({ |
|
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5195 'Level' : 'Study', |
|
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5196 'Query' : { |
|
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5197 'ProtocolName' : '*' # Matches, as wiped out by the normalization |
|
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|
5198 }, |
|
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5199 'Normalize' : True |
|
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|
5200 })) |
|
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|
5201 |
|
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|
5202 for normalize in [ True, False ]: |
|
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5203 # At the series level, the "ProtocolName" tag is allowed, and |
|
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5204 # normalization has no effect |
|
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5205 |
|
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|
5206 self.assertEqual(1, CountAnswers({ |
|
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|
5207 'Level' : 'Series', |
|
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5208 'Query' : { |
|
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5209 'ProtocolName' : '' # Universal matching |
|
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|
5210 }, |
|
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diff
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|
5211 'Normalize' : normalize, |
|
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|
5212 })) |
|
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|
5213 self.assertEqual(0, CountAnswers({ |
|
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|
5214 'Level' : 'Series', |
|
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diff
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|
5215 'Query' : { |
|
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diff
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|
5216 'ProtocolName' : '*' # Wildcard matching => no match, as the tag is absent |
|
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|
5217 }, |
|
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|
5218 'Normalize' : normalize, |
|
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diff
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|
5219 })) |
|
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diff
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|
5220 self.assertEqual(0, CountAnswers({ |
|
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diff
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|
5221 'Level' : 'Series', |
|
a2719263fd04
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diff
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|
5222 'Query' : { |
|
a2719263fd04
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|
5223 'ProtocolName' : '*MISMATCHED^VALUE*' |
|
a2719263fd04
test_study_series_find_inconsistency
Sebastien Jodogne <s.jodogne@gmail.com>
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diff
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|
5224 }, |
|
a2719263fd04
test_study_series_find_inconsistency
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diff
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|
5225 'Normalize' : normalize, |
|
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diff
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|
5226 })) |
|
a2719263fd04
test_study_series_find_inconsistency
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|
5227 |
|
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|
5228 self.assertEqual(1, CountAnswers({ |
|
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|
5229 'Level' : 'Study', |
|
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test_study_series_find_inconsistency
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diff
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|
5230 'Query' : { |
|
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262
diff
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|
5231 'ProtocolName' : '' # Universal matching |
|
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test_study_series_find_inconsistency
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diff
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|
5232 }, |
|
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|
5233 'Normalize' : normalize, |
|
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|
5234 })) |
|
a2719263fd04
test_study_series_find_inconsistency
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diff
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|
5235 |
|
a2719263fd04
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|
5236 |
|
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|
5237 ## |
|
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|
5238 ## "StudyInstanceUID" is present, and has VR "UI" => wildcard is not allowed |
|
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|
5239 ## |
|
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|
5240 |
|
a2719263fd04
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|
5241 for level in [ 'Study', 'Series' ] : |
|
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|
5242 for normalize in [ True, False ]: |
|
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|
5243 self.assertEqual(1, CountAnswers({ |
|
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|
5244 'Level' : level, |
|
a2719263fd04
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diff
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|
5245 'Query' : { |
|
a2719263fd04
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diff
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|
5246 'StudyInstanceUID' : '' # Universal matching |
|
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|
5247 }, |
|
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|
5248 'Normalize' : normalize, |
|
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|
5249 })) |
|
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|
5250 self.assertEqual(0, CountAnswers({ |
|
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test_study_series_find_inconsistency
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262
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|
5251 'Level' : level, |
|
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|
5252 'Query' : { |
|
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|
5253 'StudyInstanceUID' : 'MISMATCHED^VALUE' |
|
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|
5254 }, |
|
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diff
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|
5255 'Normalize' : normalize, |
|
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262
diff
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|
5256 })) |
|
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diff
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|
5257 self.assertEqual(1, CountAnswers({ |
|
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262
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|
5258 'Level' : level, |
|
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|
5259 'Query' : { |
|
a2719263fd04
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262
diff
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|
5260 'StudyInstanceUID' : '4.5.6' # This is the actual value |
|
a2719263fd04
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Sebastien Jodogne <s.jodogne@gmail.com>
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262
diff
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|
5261 }, |
|
a2719263fd04
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262
diff
changeset
|
5262 'Normalize' : normalize, |
|
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262
diff
changeset
|
5263 })) |
|
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262
diff
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|
5264 |
| 269 | 5265 # Wildcard matching is not allowed for this VR |
|
263
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262
diff
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|
5266 # This test fails on Orthanc <= 1.5.8 |
| 269 | 5267 self.assertRaises(Exception, lambda: CountAnswers({ |
|
263
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|
5268 'Level' : level, |
|
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262
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|
5269 'Query' : { |
| 269 | 5270 'StudyInstanceUID' : '*' |
|
263
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|
5271 }, |
|
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262
diff
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|
5272 'Normalize' : normalize, |
|
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262
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|
5273 })) |
| 265 | 5274 |
| 5275 | |
| 5276 def test_rendered(self): | |
| 5277 # New in Orthanc 1.6.0 | |
| 5278 i = UploadInstance(_REMOTE, 'ColorTestMalaterre.dcm')['ID'] | |
| 5279 im = GetImage(_REMOTE, '/instances/%s/rendered' % i) | |
| 5280 self.assertEqual("RGB", im.mode) | |
| 5281 self.assertEqual(41, im.size[0]) | |
| 5282 self.assertEqual(41, im.size[1]) | |
| 5283 | |
| 5284 # http://effbot.org/zone/pil-comparing-images.htm | |
| 5285 truth = Image.open(GetDatabasePath('ColorTestMalaterre.png')) | |
| 5286 self.assertTrue(ImageChops.difference(im, truth).getbbox() is None) | |
| 5287 | |
| 5288 im = GetImage(_REMOTE, '/instances/%s/rendered?width=10' % i) | |
| 5289 self.assertEqual("RGB", im.mode) | |
| 5290 self.assertEqual(10, im.size[0]) | |
| 5291 self.assertEqual(10, im.size[1]) | |
| 5292 | |
| 5293 im = GetImage(_REMOTE, '/instances/%s/rendered?height=10' % i) | |
| 5294 self.assertEqual("RGB", im.mode) | |
| 5295 self.assertEqual(10, im.size[0]) | |
| 5296 self.assertEqual(10, im.size[1]) | |
| 5297 | |
| 5298 im = GetImage(_REMOTE, '/instances/%s/rendered?height=128' % i) | |
| 5299 self.assertEqual("RGB", im.mode) | |
| 5300 self.assertEqual(128, im.size[0]) | |
| 5301 self.assertEqual(128, im.size[1]) | |
| 5302 | |
| 5303 im = GetImage(_REMOTE, '/instances/%s/rendered?height=10&smooth=0' % i) | |
| 5304 self.assertEqual("RGB", im.mode) | |
| 5305 self.assertEqual(10, im.size[0]) | |
| 5306 self.assertEqual(10, im.size[1]) | |
| 5307 | |
| 5308 im = GetImage(_REMOTE, '/instances/%s/rendered?height=10&smooth=1' % i) | |
| 5309 self.assertEqual("RGB", im.mode) | |
| 5310 self.assertEqual(10, im.size[0]) | |
| 5311 self.assertEqual(10, im.size[1]) | |
| 5312 | |
| 5313 im = GetImage(_REMOTE, '/instances/%s/rendered?height=5&width=10' % i) | |
| 5314 self.assertEqual("RGB", im.mode) | |
| 5315 self.assertEqual(5, im.size[0]) | |
| 5316 self.assertEqual(5, im.size[1]) | |
| 5317 | |
| 5318 | |
| 5319 # Grayscale image | |
| 5320 i = UploadInstance(_REMOTE, 'Brainix/Flair/IM-0001-0001.dcm')['ID'] | |
| 5321 im = GetImage(_REMOTE, '/instances/%s/rendered' % i) | |
| 5322 self.assertEqual("L", im.mode) | |
| 5323 self.assertEqual(288, im.size[0]) | |
| 5324 self.assertEqual(288, im.size[1]) | |
| 5325 self.assertEqual(0, im.getpixel((0, 0))) | |
| 5326 | |
| 5327 # Those are the original windowing parameters that are written | |
| 5328 # inside the DICOM file | |
| 5329 im2 = GetImage(_REMOTE, '/instances/%s/rendered?window-center=248.009544468547&window-width=431.351843817788' % i) | |
| 5330 self.assertEqual("L", im2.mode) | |
| 5331 self.assertEqual(288, im2.size[0]) | |
| 5332 self.assertEqual(288, im2.size[1]) | |
| 5333 self.assertTrue(ImageChops.difference(im, im2).getbbox() is None) | |
| 5334 | |
| 5335 im = GetImage(_REMOTE, '/instances/%s/rendered?width=512&smooth=0' % i) | |
| 5336 self.assertEqual("L", im.mode) | |
| 5337 self.assertEqual(512, im.size[0]) | |
| 5338 self.assertEqual(512, im.size[1]) | |
| 5339 | |
| 5340 im = GetImage(_REMOTE, '/instances/%s/rendered?width=10&smooth=0' % i) | |
| 5341 self.assertEqual("L", im.mode) | |
| 5342 self.assertEqual(10, im.size[0]) | |
| 5343 self.assertEqual(10, im.size[1]) | |
| 5344 | |
| 5345 im = GetImage(_REMOTE, '/instances/%s/rendered?width=10&smooth=1' % i) | |
| 5346 self.assertEqual("L", im.mode) | |
| 5347 self.assertEqual(10, im.size[0]) | |
| 5348 self.assertEqual(10, im.size[1]) | |
| 5349 | |
| 5350 im = GetImage(_REMOTE, '/instances/%s/rendered?width=1&window-center=-1000' % i) | |
| 5351 self.assertEqual("L", im.mode) | |
| 5352 self.assertEqual(1, im.size[0]) | |
| 5353 self.assertEqual(1, im.size[1]) | |
| 5354 self.assertEqual(255, im.getpixel((0, 0))) | |
| 5355 | |
| 5356 im = GetImage(_REMOTE, '/instances/%s/rendered?width=1&window-center=1000' % i) | |
| 5357 self.assertEqual("L", im.mode) | |
| 5358 self.assertEqual(1, im.size[0]) | |
| 5359 self.assertEqual(1, im.size[1]) | |
| 5360 self.assertEqual(0, im.getpixel((0, 0))) | |
| 5361 | |
| 5362 | |
| 5363 # Test monochrome 1 | |
| 5364 i = UploadInstance(_REMOTE, 'Issue44/Monochrome1.dcm')['ID'] | |
| 5365 im = GetImage(_REMOTE, '/instances/%s/rendered' % i) | |
| 5366 self.assertEqual("L", im.mode) | |
| 5367 self.assertEqual(2010, im.size[0]) | |
| 5368 self.assertEqual(2446, im.size[1]) | |
| 5369 self.assertEqual(0, im.getpixel((0, 0))) | |
| 5370 im = GetImage(_REMOTE, '/instances/%s/rendered?width=20' % i) | |
| 5371 self.assertEqual("L", im.mode) | |
| 5372 self.assertEqual(20, im.size[0]) | |
| 5373 self.assertEqual(24, im.size[1]) | |
| 5374 im = GetImage(_REMOTE, '/instances/%s/rendered?height=24' % i) | |
| 5375 self.assertEqual("L", im.mode) | |
| 5376 self.assertEqual(20, im.size[0]) | |
| 5377 self.assertEqual(24, im.size[1]) | |
| 5378 im = GetImage(_REMOTE, '/instances/%s/rendered?width=10&height=24' % i) | |
| 5379 self.assertEqual("L", im.mode) | |
| 5380 self.assertEqual(10, im.size[0]) | |
| 5381 self.assertEqual(12, im.size[1]) | |
| 5382 im = GetImage(_REMOTE, '/instances/%s/rendered?width=40&height=24' % i) | |
| 5383 self.assertEqual("L", im.mode) | |
| 5384 self.assertEqual(20, im.size[0]) | |
| 5385 self.assertEqual(24, im.size[1]) | |
|
268
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|
5386 |
|
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5387 |
|
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|
5388 def test_bitbucket_issue_154(self): |
|
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5389 # "Matching against list of UID-s by C-MOVE" |
| 319 | 5390 # https://bugs.orthanc-server.com/show_bug.cgi?id=154 |
|
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5391 a = UploadInstance(_REMOTE, 'Issue154-d1.dcm') ['ID'] |
|
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5392 b = UploadInstance(_REMOTE, 'Issue154-d2.dcm') ['ID'] |
|
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5393 |
|
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5394 study = '1.2.826.0.1.3680043.8.498.35214236271657363033644818354280454731' |
|
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5395 series1 = '1.2.826.0.1.3680043.8.498.12243321927795467590791662266352305113' |
|
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5396 series2 = '1.2.826.0.1.3680043.8.498.43769499931624584079690260699536473555' |
|
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5397 |
|
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5398 # C-FIND is working on list of UIDs |
|
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5399 i = CallFindScu([ '-k', 'QueryRetrieveLevel=SERIES', |
|
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5400 '-k', 'StudyInstanceUID=%s' % study, |
|
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5401 '-k', 'SeriesInstanceUID=%s\\%s' % (series1, series2) ]) |
|
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5402 series = re.findall('\(0020,000e\).*?\[(.*?)\]', i) |
|
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5403 self.assertEqual(2, len(series)) |
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5404 self.assertTrue(series1 in series) |
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5405 self.assertTrue(series2 in series) |
|
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5406 |
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5407 # Individual retrieval is working in Orthanc < 1.6.0 |
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5408 self.assertEqual(0, len(DoGet(_LOCAL, '/instances'))) |
|
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5409 self.assertTrue(MonitorJob(_REMOTE, lambda: CallMoveScu([ |
|
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5410 '--study', '-k', 'QueryRetrieveLevel=SERIES', |
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5411 '-k', 'StudyInstanceUID=%s' % study, |
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5412 '-k', 'SeriesInstanceUID=%s' % series1, |
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5413 ]))) |
|
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5414 self.assertTrue(MonitorJob(_REMOTE, lambda: CallMoveScu([ |
|
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5415 '--study', '-k', 'QueryRetrieveLevel=SERIES', |
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5416 '-k', 'StudyInstanceUID=%s' % study, |
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5417 '-k', 'SeriesInstanceUID=%s' % series2, |
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|
5418 ]))) |
|
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5419 self.assertEqual(2, len(DoGet(_LOCAL, '/instances'))) |
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5420 |
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|
5421 DropOrthanc(_LOCAL) |
|
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5422 |
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5423 # But list matching is working only in Orthanc >= 1.6.0 |
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5424 self.assertEqual(0, len(DoGet(_LOCAL, '/instances'))) |
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5425 self.assertTrue(MonitorJob(_REMOTE, lambda: CallMoveScu([ |
|
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|
5426 '--study', '-k', 'QueryRetrieveLevel=SERIES', |
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5427 '-k', 'StudyInstanceUID=%s' % study, |
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5428 '-k', 'SeriesInstanceUID=%s\\%s' % (series1, series2), |
|
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|
5429 ]))) |
|
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5430 self.assertEqual(2, len(DoGet(_LOCAL, '/instances'))) |
|
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5431 |
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5432 |
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5433 def test_storage_commitment_api(self): |
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5434 # Storage commitment is available since Orthanc 1.6.0 |
|
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5435 |
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5436 def WaitTransaction(uid): |
|
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5437 while True: |
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5438 s = DoGet(_REMOTE, '/storage-commitment/%s' % uid) |
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5439 if s['Status'] != 'Pending': |
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5440 return s |
|
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|
5441 else: |
|
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5442 time.sleep(0.01) |
|
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5443 |
| 281 | 5444 instance = UploadInstance(_REMOTE, 'DummyCT.dcm') |
|
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5445 sopClassUid = '1.2.840.10008.5.1.4.1.1.4' |
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5446 sopInstanceUid = '1.2.840.113619.2.176.2025.1499492.7040.1171286242.109' |
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5447 |
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5448 # Against self |
| 281 | 5449 transaction = DoPost(_REMOTE, '/modalities/self/storage-commitment', { |
| 5450 "DicomInstances" : [ [ sopClassUid, sopInstanceUid ] ], | |
| 5451 }) ['ID'] | |
|
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5452 self.assertTrue(transaction.startswith('2.25.')) |
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5453 |
|
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5454 result = WaitTransaction(transaction) |
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|
5455 self.assertEqual('ORTHANC', result['RemoteAET']) |
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|
5456 self.assertEqual('Success', result['Status']) |
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|
5457 self.assertEqual(1, len(result['Success'])) |
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5458 self.assertEqual(0, len(result['Failures'])) |
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|
5459 self.assertEqual(sopClassUid, result['Success'][0]['SOPClassUID']) |
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5460 self.assertEqual(sopInstanceUid, result['Success'][0]['SOPInstanceUID']) |
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|
5461 |
| 281 | 5462 tmp = DoPost(_REMOTE, '/modalities/self/storage-commitment', { |
| 5463 "DicomInstances" : [ | |
| 5464 { 'SOPClassUID' : sopClassUid, | |
| 5465 'SOPInstanceUID' : sopInstanceUid }, | |
| 5466 ], | |
| 5467 }) | |
| 5468 self.assertEqual(tmp['Path'], '/storage-commitment/%s' % tmp['ID']) | |
| 5469 self.assertEqual(result, WaitTransaction(transaction)) | |
| 5470 | |
| 5471 tmp = DoPost(_REMOTE, '/modalities/self/storage-commitment', { | |
| 5472 "Resources" : [ | |
| 5473 instance['ID'], | |
| 5474 instance['ParentSeries'], | |
| 5475 instance['ParentStudy'], | |
| 5476 instance['ParentPatient'], | |
| 5477 ] | |
| 5478 }) | |
|
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5479 self.assertEqual(tmp['Path'], '/storage-commitment/%s' % tmp['ID']) |
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|
5480 self.assertEqual(result, WaitTransaction(transaction)) |
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5481 |
|
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5482 |
| 281 | 5483 transaction = DoPost(_REMOTE, '/modalities/self/storage-commitment', { |
| 5484 "DicomInstances" : [ | |
| 5485 [ 'nope', 'nope2' ], | |
| 5486 [ sopClassUid, sopInstanceUid ], | |
| 5487 ], | |
| 5488 }) ['ID'] | |
|
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5489 self.assertTrue(transaction.startswith('2.25.')) |
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5490 |
|
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5491 result = WaitTransaction(transaction) |
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5492 self.assertEqual('ORTHANC', result['RemoteAET']) |
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5493 self.assertEqual('Failure', result['Status']) |
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5494 self.assertEqual(1, len(result['Success'])) |
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|
5495 self.assertEqual(1, len(result['Failures'])) |
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5496 self.assertEqual(sopClassUid, result['Success'][0]['SOPClassUID']) |
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5497 self.assertEqual(sopInstanceUid, result['Success'][0]['SOPInstanceUID']) |
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5498 self.assertEqual('nope', result['Failures'][0]['SOPClassUID']) |
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|
5499 self.assertEqual('nope2', result['Failures'][0]['SOPInstanceUID']) |
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5500 self.assertEqual(274, result['Failures'][0]['FailureReason']) |
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5501 |
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5502 # Cannot remove items from a failed storage commitment transaction |
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|
5503 self.assertRaises(Exception, lambda: |
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5504 DoPost(_REMOTE, '/storage-commitment/%s/remove' % transaction)) |
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5505 |
|
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5506 |
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5507 # Against Orthanc 0.8.6, that does not support storage commitment |
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5508 self.assertRaises(Exception, lambda: |
| 281 | 5509 DoPost(_REMOTE, '/modalities/orthanctest/storage-commitment', { |
| 5510 "DicomInstances" : [ | |
| 5511 [ sopClassUid, sopInstanceUid ], | |
| 5512 ] | |
| 5513 })) | |
|
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5514 |
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5515 |
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5516 |
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5517 def test_storage_commitment_store(self): |
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5518 # Storage commitment is available since Orthanc 1.6.0 |
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parents:
279
diff
changeset
|
5519 |
|
5daa3896981c
testing storage commitment reports
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279
diff
changeset
|
5520 def WaitTransaction(uid): |
|
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testing storage commitment reports
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279
diff
changeset
|
5521 while True: |
|
5daa3896981c
testing storage commitment reports
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279
diff
changeset
|
5522 s = DoGet(_REMOTE, '/storage-commitment/%s' % uid) |
|
5daa3896981c
testing storage commitment reports
Sebastien Jodogne <s.jodogne@gmail.com>
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279
diff
changeset
|
5523 if s['Status'] != 'Pending': |
|
5daa3896981c
testing storage commitment reports
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
279
diff
changeset
|
5524 return s |
|
5daa3896981c
testing storage commitment reports
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
279
diff
changeset
|
5525 else: |
|
342
bf8369ea3ff1
more tests of webdav
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
341
diff
changeset
|
5526 time.sleep(0.01) |
|
280
5daa3896981c
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parents:
279
diff
changeset
|
5527 |
|
279
31e1e49df380
starting tests for storage commitment
Sebastien Jodogne <s.jodogne@gmail.com>
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269
diff
changeset
|
5528 i = UploadInstance(_REMOTE, 'DummyCT.dcm')['ID'] |
|
31e1e49df380
starting tests for storage commitment
Sebastien Jodogne <s.jodogne@gmail.com>
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269
diff
changeset
|
5529 self.assertEqual(1, len(DoGet(_REMOTE, '/instances'))) |
|
31e1e49df380
starting tests for storage commitment
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269
diff
changeset
|
5530 self.assertEqual(0, len(DoGet(_LOCAL, '/instances'))) |
|
31e1e49df380
starting tests for storage commitment
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parents:
269
diff
changeset
|
5531 |
|
31e1e49df380
starting tests for storage commitment
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
269
diff
changeset
|
5532 # The Orthanc 0.8.6 from "_LOCAL" does not support storage commitment |
|
31e1e49df380
starting tests for storage commitment
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269
diff
changeset
|
5533 self.assertRaises(Exception, lambda: DoPost(_REMOTE, '/modalities/orthanctest/store', { |
|
31e1e49df380
starting tests for storage commitment
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269
diff
changeset
|
5534 'Resources' : [ i ], |
|
31e1e49df380
starting tests for storage commitment
Sebastien Jodogne <s.jodogne@gmail.com>
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269
diff
changeset
|
5535 'StorageCommitment' : True, |
|
31e1e49df380
starting tests for storage commitment
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parents:
269
diff
changeset
|
5536 })) |
|
31e1e49df380
starting tests for storage commitment
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269
diff
changeset
|
5537 |
|
31e1e49df380
starting tests for storage commitment
Sebastien Jodogne <s.jodogne@gmail.com>
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269
diff
changeset
|
5538 j = DoPost(_REMOTE, '/modalities/orthanctest/store', { |
|
31e1e49df380
starting tests for storage commitment
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269
diff
changeset
|
5539 'Resources' : [ i ], |
|
31e1e49df380
starting tests for storage commitment
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269
diff
changeset
|
5540 'StorageCommitment' : False, |
|
31e1e49df380
starting tests for storage commitment
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
269
diff
changeset
|
5541 }) |
|
31e1e49df380
starting tests for storage commitment
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
269
diff
changeset
|
5542 self.assertEqual(1, len(DoGet(_LOCAL, '/instances'))) |
|
31e1e49df380
starting tests for storage commitment
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
269
diff
changeset
|
5543 |
|
31e1e49df380
starting tests for storage commitment
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
269
diff
changeset
|
5544 j = DoPost(_REMOTE, '/modalities/self/store', { |
|
31e1e49df380
starting tests for storage commitment
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
269
diff
changeset
|
5545 'Resources' : [ i ], |
|
31e1e49df380
starting tests for storage commitment
Sebastien Jodogne <s.jodogne@gmail.com>
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269
diff
changeset
|
5546 'StorageCommitment' : True, |
|
31e1e49df380
starting tests for storage commitment
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
269
diff
changeset
|
5547 }) |
|
31e1e49df380
starting tests for storage commitment
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
269
diff
changeset
|
5548 |
|
31e1e49df380
starting tests for storage commitment
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
269
diff
changeset
|
5549 transaction = j['StorageCommitmentTransactionUID'] |
|
31e1e49df380
starting tests for storage commitment
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parents:
269
diff
changeset
|
5550 self.assertTrue(transaction.startswith('2.25.')) |
|
280
5daa3896981c
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Sebastien Jodogne <s.jodogne@gmail.com>
parents:
279
diff
changeset
|
5551 |
|
5daa3896981c
testing storage commitment reports
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
279
diff
changeset
|
5552 result = WaitTransaction(transaction) |
|
5daa3896981c
testing storage commitment reports
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
279
diff
changeset
|
5553 self.assertEqual('ORTHANC', result['RemoteAET']) |
|
5daa3896981c
testing storage commitment reports
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
279
diff
changeset
|
5554 self.assertEqual('Success', result['Status']) |
|
5daa3896981c
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279
diff
changeset
|
5555 self.assertEqual(1, len(result['Success'])) |
|
5daa3896981c
testing storage commitment reports
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
279
diff
changeset
|
5556 self.assertEqual(0, len(result['Failures'])) |
|
5daa3896981c
testing storage commitment reports
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
279
diff
changeset
|
5557 self.assertEqual('1.2.840.10008.5.1.4.1.1.4', result['Success'][0]['SOPClassUID']) |
|
5daa3896981c
testing storage commitment reports
Sebastien Jodogne <s.jodogne@gmail.com>
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279
diff
changeset
|
5558 self.assertEqual('1.2.840.113619.2.176.2025.1499492.7040.1171286242.109', |
|
5daa3896981c
testing storage commitment reports
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parents:
279
diff
changeset
|
5559 result['Success'][0]['SOPInstanceUID']) |
|
5daa3896981c
testing storage commitment reports
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
279
diff
changeset
|
5560 |
|
5daa3896981c
testing storage commitment reports
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
279
diff
changeset
|
5561 self.assertEqual(1, len(DoGet(_REMOTE, '/instances'))) |
|
5daa3896981c
testing storage commitment reports
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
279
diff
changeset
|
5562 DoPost(_REMOTE, '/storage-commitment/%s/remove' % transaction) |
|
5daa3896981c
testing storage commitment reports
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
279
diff
changeset
|
5563 self.assertEqual(0, len(DoGet(_REMOTE, '/instances'))) |
|
285
281a32ecc5c1
test_store_straight
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
281
diff
changeset
|
5564 |
|
281a32ecc5c1
test_store_straight
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
281
diff
changeset
|
5565 |
|
281a32ecc5c1
test_store_straight
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
281
diff
changeset
|
5566 def test_store_straight(self): # New in Orthanc 1.6.1 |
|
281a32ecc5c1
test_store_straight
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
281
diff
changeset
|
5567 self.assertEqual(0, len(DoGet(_LOCAL, '/instances'))) |
|
281a32ecc5c1
test_store_straight
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
281
diff
changeset
|
5568 self.assertEqual(0, len(DoGet(_REMOTE, '/instances'))) |
|
281a32ecc5c1
test_store_straight
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
281
diff
changeset
|
5569 |
|
281a32ecc5c1
test_store_straight
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
281
diff
changeset
|
5570 with open(GetDatabasePath('DummyCT.dcm'), 'rb') as f: |
|
281a32ecc5c1
test_store_straight
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
281
diff
changeset
|
5571 dicom = f.read() |
|
281a32ecc5c1
test_store_straight
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
281
diff
changeset
|
5572 |
|
281a32ecc5c1
test_store_straight
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
281
diff
changeset
|
5573 self.assertRaises(Exception, lambda: DoPost( |
|
281a32ecc5c1
test_store_straight
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
281
diff
changeset
|
5574 _REMOTE, '/modalities/orthanctest/store-straight', 'nope', 'nope')) |
|
281a32ecc5c1
test_store_straight
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
281
diff
changeset
|
5575 |
|
281a32ecc5c1
test_store_straight
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
281
diff
changeset
|
5576 answer = DoPost(_REMOTE, '/modalities/orthanctest/store-straight', dicom, 'nope') |
|
281a32ecc5c1
test_store_straight
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
281
diff
changeset
|
5577 |
|
281a32ecc5c1
test_store_straight
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
281
diff
changeset
|
5578 self.assertEqual('1.2.840.10008.5.1.4.1.1.4', |
|
281a32ecc5c1
test_store_straight
Sebastien Jodogne <s.jodogne@gmail.com>
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281
diff
changeset
|
5579 answer['SOPClassUID']) |
|
281a32ecc5c1
test_store_straight
Sebastien Jodogne <s.jodogne@gmail.com>
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281
diff
changeset
|
5580 self.assertEqual('1.2.840.113619.2.176.2025.1499492.7040.1171286242.109', |
|
281a32ecc5c1
test_store_straight
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
281
diff
changeset
|
5581 answer['SOPInstanceUID']) |
|
281a32ecc5c1
test_store_straight
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
281
diff
changeset
|
5582 |
|
281a32ecc5c1
test_store_straight
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
281
diff
changeset
|
5583 self.assertEqual(1, len(DoGet(_LOCAL, '/instances'))) |
|
281a32ecc5c1
test_store_straight
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
281
diff
changeset
|
5584 self.assertEqual(0, len(DoGet(_REMOTE, '/instances'))) |
|
289
4a70411ac9ad
test_storescu_transcoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
285
diff
changeset
|
5585 |
|
4a70411ac9ad
test_storescu_transcoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
285
diff
changeset
|
5586 |
|
4a70411ac9ad
test_storescu_transcoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
285
diff
changeset
|
5587 def test_storescu_transcoding(self): # New in Orthanc 1.7.0 |
|
4a70411ac9ad
test_storescu_transcoding
Sebastien Jodogne <s.jodogne@gmail.com>
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285
diff
changeset
|
5588 # Add a RLE-encoded DICOM file |
|
4a70411ac9ad
test_storescu_transcoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
285
diff
changeset
|
5589 i = UploadInstance(_REMOTE, 'TransferSyntaxes/1.2.840.10008.1.2.5.dcm')['ID'] |
|
4a70411ac9ad
test_storescu_transcoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
285
diff
changeset
|
5590 self.assertEqual(0, len(DoGet(_LOCAL, '/instances'))) |
|
4a70411ac9ad
test_storescu_transcoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
285
diff
changeset
|
5591 self.assertEqual(1, len(DoGet(_REMOTE, '/instances'))) |
|
4a70411ac9ad
test_storescu_transcoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
285
diff
changeset
|
5592 rleSize = len(DoGet(_REMOTE, '/instances/%s/file' % i)) |
|
4a70411ac9ad
test_storescu_transcoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
285
diff
changeset
|
5593 |
|
4a70411ac9ad
test_storescu_transcoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
285
diff
changeset
|
5594 # Export the instance, with transcoding: "_REMOTE" is the |
|
4a70411ac9ad
test_storescu_transcoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
285
diff
changeset
|
5595 # Orthanc server being tested |
|
4a70411ac9ad
test_storescu_transcoding
Sebastien Jodogne <s.jodogne@gmail.com>
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285
diff
changeset
|
5596 try: |
|
4a70411ac9ad
test_storescu_transcoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
285
diff
changeset
|
5597 DoDelete(_REMOTE, '/modalities/toto') |
|
4a70411ac9ad
test_storescu_transcoding
Sebastien Jodogne <s.jodogne@gmail.com>
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285
diff
changeset
|
5598 except: |
|
4a70411ac9ad
test_storescu_transcoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
285
diff
changeset
|
5599 pass |
|
4a70411ac9ad
test_storescu_transcoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
285
diff
changeset
|
5600 |
|
4a70411ac9ad
test_storescu_transcoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
285
diff
changeset
|
5601 params = DoGet(_REMOTE, '/modalities?expand') ['orthanctest'] |
|
4a70411ac9ad
test_storescu_transcoding
Sebastien Jodogne <s.jodogne@gmail.com>
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diff
changeset
|
5602 DoPut(_REMOTE, '/modalities/toto', params) |
|
4a70411ac9ad
test_storescu_transcoding
Sebastien Jodogne <s.jodogne@gmail.com>
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diff
changeset
|
5603 DoPost(_REMOTE, '/modalities/toto/store', str(i), 'text/plain') |
|
4a70411ac9ad
test_storescu_transcoding
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diff
changeset
|
5604 j = DoGet(_LOCAL, '/instances') |
|
4a70411ac9ad
test_storescu_transcoding
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diff
changeset
|
5605 self.assertEqual(1, len(j)) |
|
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test_storescu_transcoding
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285
diff
changeset
|
5606 uncompressedSize = len(DoGet(_LOCAL, '/instances/%s/file' % j[0])) |
|
4a70411ac9ad
test_storescu_transcoding
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diff
changeset
|
5607 self.assertTrue(uncompressedSize > rleSize / 2) |
|
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test_storescu_transcoding
Sebastien Jodogne <s.jodogne@gmail.com>
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diff
changeset
|
5608 |
|
4a70411ac9ad
test_storescu_transcoding
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diff
changeset
|
5609 # Export, with transcoding disabled => this fails |
|
4a70411ac9ad
test_storescu_transcoding
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parents:
285
diff
changeset
|
5610 params['AllowTranscoding'] = False |
|
4a70411ac9ad
test_storescu_transcoding
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parents:
285
diff
changeset
|
5611 DoPut(_REMOTE, '/modalities/toto', params) |
|
4a70411ac9ad
test_storescu_transcoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
285
diff
changeset
|
5612 self.assertRaises(Exception, lambda: DoPost(_REMOTE, '/modalities/toto/store', str(i), 'text/plain')) |
|
290
b5333f87065b
test_bitbucket_issue_169
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
289
diff
changeset
|
5613 |
|
b5333f87065b
test_bitbucket_issue_169
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
289
diff
changeset
|
5614 |
|
b5333f87065b
test_bitbucket_issue_169
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
changeset
|
5615 def test_bitbucket_issue_169(self): |
|
b5333f87065b
test_bitbucket_issue_169
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
changeset
|
5616 with open(GetDatabasePath('Issue169.dcm.bz2'), 'rb') as f: |
|
b5333f87065b
test_bitbucket_issue_169
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
289
diff
changeset
|
5617 dicom = bz2.decompress(f.read()) |
|
b5333f87065b
test_bitbucket_issue_169
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
289
diff
changeset
|
5618 |
|
b5333f87065b
test_bitbucket_issue_169
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
changeset
|
5619 self.assertEqual('1.2.840.10008.1.2.1', GetTransferSyntax(dicom)) |
|
b5333f87065b
test_bitbucket_issue_169
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
289
diff
changeset
|
5620 |
|
b5333f87065b
test_bitbucket_issue_169
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
289
diff
changeset
|
5621 self.assertEqual(44350560, len(dicom)) |
|
b5333f87065b
test_bitbucket_issue_169
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
289
diff
changeset
|
5622 i = DoPost(_REMOTE, '/instances', dicom, 'application/dicom') ['ID'] |
|
b5333f87065b
test_bitbucket_issue_169
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
289
diff
changeset
|
5623 |
|
b5333f87065b
test_bitbucket_issue_169
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
289
diff
changeset
|
5624 tags = DoGet(_REMOTE, '/instances/%s/tags' % i) |
|
b5333f87065b
test_bitbucket_issue_169
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
289
diff
changeset
|
5625 self.assertEqual('NORMAL', tags['1337,1001']['Value']) |
|
b5333f87065b
test_bitbucket_issue_169
Sebastien Jodogne <s.jodogne@gmail.com>
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289
diff
changeset
|
5626 |
|
b5333f87065b
test_bitbucket_issue_169
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289
diff
changeset
|
5627 self.assertEqual(0, len(DoGet(_LOCAL, '/instances'))) |
|
b5333f87065b
test_bitbucket_issue_169
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parents:
289
diff
changeset
|
5628 DoPost(_REMOTE, '/modalities/orthanctest/store', str(i), 'text/plain') |
|
b5333f87065b
test_bitbucket_issue_169
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parents:
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diff
changeset
|
5629 j = DoGet(_LOCAL, '/instances') |
|
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test_bitbucket_issue_169
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parents:
289
diff
changeset
|
5630 self.assertEqual(1, len(j)) |
|
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test_bitbucket_issue_169
Sebastien Jodogne <s.jodogne@gmail.com>
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289
diff
changeset
|
5631 |
|
b5333f87065b
test_bitbucket_issue_169
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
289
diff
changeset
|
5632 # In Orthanc <= 1.6.1, transfer syntax changed from "Explicit |
|
b5333f87065b
test_bitbucket_issue_169
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289
diff
changeset
|
5633 # VR Little Endian" (1.2.840.10008.1.2.1) to "Implicit VR |
|
b5333f87065b
test_bitbucket_issue_169
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
289
diff
changeset
|
5634 # Little Endian" (1.2.840.10008.1.2) |
|
291
cfa785074c64
test_modify_transcode
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
290
diff
changeset
|
5635 self.assertEqual('1.2.840.10008.1.2.1', GetTransferSyntax( |
|
cfa785074c64
test_modify_transcode
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
290
diff
changeset
|
5636 DoGet(_LOCAL, '/instances/%s/file' % j[0]))) |
|
290
b5333f87065b
test_bitbucket_issue_169
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
289
diff
changeset
|
5637 |
|
b5333f87065b
test_bitbucket_issue_169
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
289
diff
changeset
|
5638 # In Orthanc <= 1.6.1, the value of the private tags was lost |
|
b5333f87065b
test_bitbucket_issue_169
Sebastien Jodogne <s.jodogne@gmail.com>
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289
diff
changeset
|
5639 # because of this transcoding |
|
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test_bitbucket_issue_169
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
289
diff
changeset
|
5640 tags = DoGet(_LOCAL, '/instances/%s/tags' % j[0]) |
|
b5333f87065b
test_bitbucket_issue_169
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
289
diff
changeset
|
5641 self.assertEqual('NORMAL', tags['1337,1001']['Value']) |
|
291
cfa785074c64
test_modify_transcode
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
290
diff
changeset
|
5642 |
|
cfa785074c64
test_modify_transcode
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
290
diff
changeset
|
5643 |
|
302
22b6dd0f8c84
test_modify_transcode_study
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
301
diff
changeset
|
5644 def test_modify_transcode_instance(self): |
|
291
cfa785074c64
test_modify_transcode
Sebastien Jodogne <s.jodogne@gmail.com>
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290
diff
changeset
|
5645 i = UploadInstance(_REMOTE, 'KarstenHilbertRF.dcm')['ID'] |
|
cfa785074c64
test_modify_transcode
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
290
diff
changeset
|
5646 self.assertEqual('1.2.840.10008.1.2.1', GetTransferSyntax( |
|
cfa785074c64
test_modify_transcode
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
290
diff
changeset
|
5647 DoGet(_REMOTE, '/instances/%s/file' % i))) |
|
cfa785074c64
test_modify_transcode
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
290
diff
changeset
|
5648 |
|
299
c2144cf4bd83
HasGdcmPlugin() test
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
293
diff
changeset
|
5649 a = ExtractDicomTags(DoGet(_REMOTE, '/instances/%s/file' % i), [ 'SOPInstanceUID' ]) [0] |
|
c2144cf4bd83
HasGdcmPlugin() test
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
293
diff
changeset
|
5650 self.assertTrue(len(a) > 20) |
|
c2144cf4bd83
HasGdcmPlugin() test
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
293
diff
changeset
|
5651 |
|
c2144cf4bd83
HasGdcmPlugin() test
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
293
diff
changeset
|
5652 SYNTAXES = [ |
|
c2144cf4bd83
HasGdcmPlugin() test
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
293
diff
changeset
|
5653 '1.2.840.10008.1.2', |
|
c2144cf4bd83
HasGdcmPlugin() test
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
293
diff
changeset
|
5654 '1.2.840.10008.1.2.1', |
|
300
d6c2eb5a2603
disabling test on Deflated Explicit VR Little Endian
Sebastien Jodogne <s.jodogne@gmail.com>
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299
diff
changeset
|
5655 #'1.2.840.10008.1.2.1.99', # Deflated Explicit VR Little Endian (cannot be decoded in debug mode if Orthanc is statically linked against DCMTK 3.6.5) |
|
299
c2144cf4bd83
HasGdcmPlugin() test
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
293
diff
changeset
|
5656 '1.2.840.10008.1.2.2', |
|
c2144cf4bd83
HasGdcmPlugin() test
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
293
diff
changeset
|
5657 '1.2.840.10008.1.2.4.50', |
|
c2144cf4bd83
HasGdcmPlugin() test
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
293
diff
changeset
|
5658 '1.2.840.10008.1.2.4.51', |
|
c2144cf4bd83
HasGdcmPlugin() test
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
293
diff
changeset
|
5659 '1.2.840.10008.1.2.4.57', |
|
c2144cf4bd83
HasGdcmPlugin() test
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
293
diff
changeset
|
5660 '1.2.840.10008.1.2.4.70', |
|
c2144cf4bd83
HasGdcmPlugin() test
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
293
diff
changeset
|
5661 ] |
|
c2144cf4bd83
HasGdcmPlugin() test
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
293
diff
changeset
|
5662 |
| 304 | 5663 if HasGdcmPlugin(_REMOTE): |
|
299
c2144cf4bd83
HasGdcmPlugin() test
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
293
diff
changeset
|
5664 SYNTAXES = SYNTAXES + [ |
|
c2144cf4bd83
HasGdcmPlugin() test
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
293
diff
changeset
|
5665 '1.2.840.10008.1.2.4.80', # This makes DCMTK 3.6.2 crash |
|
c2144cf4bd83
HasGdcmPlugin() test
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
293
diff
changeset
|
5666 '1.2.840.10008.1.2.4.81', # This makes DCMTK 3.6.2 crash |
|
c2144cf4bd83
HasGdcmPlugin() test
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
293
diff
changeset
|
5667 '1.2.840.10008.1.2.4.90', # JPEG2k, unavailable without GDCM |
|
c2144cf4bd83
HasGdcmPlugin() test
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
293
diff
changeset
|
5668 '1.2.840.10008.1.2.4.91', # JPEG2k, unavailable without GDCM |
|
c2144cf4bd83
HasGdcmPlugin() test
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
293
diff
changeset
|
5669 ] |
|
c2144cf4bd83
HasGdcmPlugin() test
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
293
diff
changeset
|
5670 |
|
c2144cf4bd83
HasGdcmPlugin() test
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
293
diff
changeset
|
5671 for syntax in SYNTAXES: |
|
291
cfa785074c64
test_modify_transcode
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
290
diff
changeset
|
5672 transcoded = DoPost(_REMOTE, '/instances/%s/modify' % i, { |
|
cfa785074c64
test_modify_transcode
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
290
diff
changeset
|
5673 'Transcode' : syntax, |
|
299
c2144cf4bd83
HasGdcmPlugin() test
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
293
diff
changeset
|
5674 'Keep' : [ 'SOPInstanceUID' ], |
|
c2144cf4bd83
HasGdcmPlugin() test
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
293
diff
changeset
|
5675 'Force' : True, |
|
291
cfa785074c64
test_modify_transcode
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
290
diff
changeset
|
5676 }) |
|
cfa785074c64
test_modify_transcode
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
290
diff
changeset
|
5677 |
|
cfa785074c64
test_modify_transcode
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
290
diff
changeset
|
5678 self.assertEqual(syntax, GetTransferSyntax(transcoded)) |
|
292
e1827a4f5d3b
test_archive_transcode
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
291
diff
changeset
|
5679 |
|
299
c2144cf4bd83
HasGdcmPlugin() test
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
293
diff
changeset
|
5680 b = ExtractDicomTags(transcoded, [ 'SOPInstanceUID' ]) [0] |
|
c2144cf4bd83
HasGdcmPlugin() test
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
293
diff
changeset
|
5681 self.assertTrue(len(b) > 20) |
|
c2144cf4bd83
HasGdcmPlugin() test
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
293
diff
changeset
|
5682 if syntax in [ '1.2.840.10008.1.2.4.50', |
|
c2144cf4bd83
HasGdcmPlugin() test
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
293
diff
changeset
|
5683 '1.2.840.10008.1.2.4.51', |
|
c2144cf4bd83
HasGdcmPlugin() test
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
293
diff
changeset
|
5684 '1.2.840.10008.1.2.4.81', |
|
c2144cf4bd83
HasGdcmPlugin() test
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
293
diff
changeset
|
5685 '1.2.840.10008.1.2.4.91' ]: |
|
c2144cf4bd83
HasGdcmPlugin() test
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
293
diff
changeset
|
5686 # Lossy transcoding: The SOP instance UID must have changed |
|
c2144cf4bd83
HasGdcmPlugin() test
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
293
diff
changeset
|
5687 self.assertNotEqual(a, b) |
|
c2144cf4bd83
HasGdcmPlugin() test
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
293
diff
changeset
|
5688 else: |
|
c2144cf4bd83
HasGdcmPlugin() test
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
293
diff
changeset
|
5689 self.assertEqual(a, b) |
|
292
e1827a4f5d3b
test_archive_transcode
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
291
diff
changeset
|
5690 |
|
e1827a4f5d3b
test_archive_transcode
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
291
diff
changeset
|
5691 def test_archive_transcode(self): |
|
e1827a4f5d3b
test_archive_transcode
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
291
diff
changeset
|
5692 info = UploadInstance(_REMOTE, 'KarstenHilbertRF.dcm') |
|
e1827a4f5d3b
test_archive_transcode
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
291
diff
changeset
|
5693 |
|
293
032722c3e919
extended test_archive_transcode
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
292
diff
changeset
|
5694 # GET on "/media" |
|
292
e1827a4f5d3b
test_archive_transcode
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
291
diff
changeset
|
5695 z = GetArchive(_REMOTE, '/patients/%s/media' % info['ParentPatient']) |
|
e1827a4f5d3b
test_archive_transcode
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
291
diff
changeset
|
5696 self.assertEqual(2, len(z.namelist())) |
|
e1827a4f5d3b
test_archive_transcode
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
291
diff
changeset
|
5697 self.assertEqual('1.2.840.10008.1.2.1', GetTransferSyntax(z.read('IMAGES/IM0'))) |
|
e1827a4f5d3b
test_archive_transcode
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
291
diff
changeset
|
5698 |
|
e1827a4f5d3b
test_archive_transcode
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
291
diff
changeset
|
5699 self.assertRaises(Exception, lambda: DoGet(_REMOTE, '/patients/%s/media?transcode=nope' % info['ParentPatient'])) |
|
e1827a4f5d3b
test_archive_transcode
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
291
diff
changeset
|
5700 |
|
e1827a4f5d3b
test_archive_transcode
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
291
diff
changeset
|
5701 z = GetArchive(_REMOTE, '/patients/%s/media?transcode=1.2.840.10008.1.2.4.50' % info['ParentPatient']) |
|
e1827a4f5d3b
test_archive_transcode
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
291
diff
changeset
|
5702 self.assertEqual('1.2.840.10008.1.2.4.50', GetTransferSyntax(z.read('IMAGES/IM0'))) |
|
e1827a4f5d3b
test_archive_transcode
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
291
diff
changeset
|
5703 |
|
e1827a4f5d3b
test_archive_transcode
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
291
diff
changeset
|
5704 z = GetArchive(_REMOTE, '/studies/%s/media?transcode=1.2.840.10008.1.2.4.51' % info['ParentStudy']) |
|
e1827a4f5d3b
test_archive_transcode
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
291
diff
changeset
|
5705 self.assertEqual('1.2.840.10008.1.2.4.51', GetTransferSyntax(z.read('IMAGES/IM0'))) |
|
e1827a4f5d3b
test_archive_transcode
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
291
diff
changeset
|
5706 |
|
e1827a4f5d3b
test_archive_transcode
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
291
diff
changeset
|
5707 z = GetArchive(_REMOTE, '/series/%s/media?transcode=1.2.840.10008.1.2.4.57' % info['ParentSeries']) |
|
e1827a4f5d3b
test_archive_transcode
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
291
diff
changeset
|
5708 self.assertEqual('1.2.840.10008.1.2.4.57', GetTransferSyntax(z.read('IMAGES/IM0'))) |
|
e1827a4f5d3b
test_archive_transcode
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
291
diff
changeset
|
5709 |
|
293
032722c3e919
extended test_archive_transcode
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
292
diff
changeset
|
5710 |
|
032722c3e919
extended test_archive_transcode
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
292
diff
changeset
|
5711 # POST on "/media" |
|
032722c3e919
extended test_archive_transcode
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
292
diff
changeset
|
5712 self.assertRaises(Exception, lambda: PostArchive( |
|
032722c3e919
extended test_archive_transcode
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
292
diff
changeset
|
5713 _REMOTE, '/patients/%s/media' % info['ParentPatient'], { 'Transcode' : 'nope' })) |
|
032722c3e919
extended test_archive_transcode
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
292
diff
changeset
|
5714 |
|
032722c3e919
extended test_archive_transcode
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
292
diff
changeset
|
5715 z = PostArchive(_REMOTE, '/patients/%s/media' % info['ParentPatient'], { |
|
032722c3e919
extended test_archive_transcode
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
292
diff
changeset
|
5716 'Transcode' : '1.2.840.10008.1.2.4.50', |
|
032722c3e919
extended test_archive_transcode
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
292
diff
changeset
|
5717 }) |
|
032722c3e919
extended test_archive_transcode
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
292
diff
changeset
|
5718 self.assertEqual('1.2.840.10008.1.2.4.50', GetTransferSyntax(z.read('IMAGES/IM0'))) |
|
032722c3e919
extended test_archive_transcode
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
292
diff
changeset
|
5719 |
|
032722c3e919
extended test_archive_transcode
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
292
diff
changeset
|
5720 z = PostArchive(_REMOTE, '/studies/%s/media' % info['ParentStudy'], { |
|
032722c3e919
extended test_archive_transcode
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
292
diff
changeset
|
5721 'Transcode' : '1.2.840.10008.1.2.4.51', |
|
032722c3e919
extended test_archive_transcode
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
292
diff
changeset
|
5722 }) |
|
032722c3e919
extended test_archive_transcode
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
292
diff
changeset
|
5723 self.assertEqual('1.2.840.10008.1.2.4.51', GetTransferSyntax(z.read('IMAGES/IM0'))) |
|
032722c3e919
extended test_archive_transcode
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
292
diff
changeset
|
5724 |
|
032722c3e919
extended test_archive_transcode
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
292
diff
changeset
|
5725 z = PostArchive(_REMOTE, '/series/%s/media' % info['ParentSeries'], { |
|
032722c3e919
extended test_archive_transcode
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
292
diff
changeset
|
5726 'Transcode' : '1.2.840.10008.1.2.4.57', |
|
032722c3e919
extended test_archive_transcode
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
292
diff
changeset
|
5727 }) |
|
032722c3e919
extended test_archive_transcode
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
292
diff
changeset
|
5728 self.assertEqual('1.2.840.10008.1.2.4.57', GetTransferSyntax(z.read('IMAGES/IM0'))) |
|
032722c3e919
extended test_archive_transcode
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
292
diff
changeset
|
5729 |
|
032722c3e919
extended test_archive_transcode
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
292
diff
changeset
|
5730 |
|
032722c3e919
extended test_archive_transcode
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
292
diff
changeset
|
5731 # GET on "/archive" |
|
292
e1827a4f5d3b
test_archive_transcode
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
291
diff
changeset
|
5732 z = GetArchive(_REMOTE, '/patients/%s/archive' % info['ParentPatient']) |
|
e1827a4f5d3b
test_archive_transcode
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
291
diff
changeset
|
5733 self.assertEqual(1, len(z.namelist())) |
|
e1827a4f5d3b
test_archive_transcode
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
291
diff
changeset
|
5734 self.assertEqual('1.2.840.10008.1.2.1', GetTransferSyntax(z.read(z.namelist()[0]))) |
|
e1827a4f5d3b
test_archive_transcode
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
291
diff
changeset
|
5735 |
|
e1827a4f5d3b
test_archive_transcode
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
291
diff
changeset
|
5736 self.assertRaises(Exception, lambda: DoGet(_REMOTE, '/patients/%s/archive?transcode=nope' % info['ParentPatient'])) |
|
e1827a4f5d3b
test_archive_transcode
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
291
diff
changeset
|
5737 |
|
e1827a4f5d3b
test_archive_transcode
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
291
diff
changeset
|
5738 z = GetArchive(_REMOTE, '/patients/%s/archive?transcode=1.2.840.10008.1.2' % info['ParentPatient']) |
|
e1827a4f5d3b
test_archive_transcode
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
291
diff
changeset
|
5739 self.assertEqual('1.2.840.10008.1.2', GetTransferSyntax(z.read(z.namelist()[0]))) |
|
e1827a4f5d3b
test_archive_transcode
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
291
diff
changeset
|
5740 |
|
e1827a4f5d3b
test_archive_transcode
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
291
diff
changeset
|
5741 z = GetArchive(_REMOTE, '/studies/%s/archive?transcode=1.2.840.10008.1.2.2' % info['ParentStudy']) |
|
e1827a4f5d3b
test_archive_transcode
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
291
diff
changeset
|
5742 self.assertEqual('1.2.840.10008.1.2.2', GetTransferSyntax(z.read(z.namelist()[0]))) |
|
e1827a4f5d3b
test_archive_transcode
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
291
diff
changeset
|
5743 |
|
e1827a4f5d3b
test_archive_transcode
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
291
diff
changeset
|
5744 z = GetArchive(_REMOTE, '/series/%s/archive?transcode=1.2.840.10008.1.2.4.70' % info['ParentSeries']) |
|
e1827a4f5d3b
test_archive_transcode
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
291
diff
changeset
|
5745 self.assertEqual('1.2.840.10008.1.2.4.70', GetTransferSyntax(z.read(z.namelist()[0]))) |
|
293
032722c3e919
extended test_archive_transcode
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
292
diff
changeset
|
5746 |
|
032722c3e919
extended test_archive_transcode
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
292
diff
changeset
|
5747 |
|
032722c3e919
extended test_archive_transcode
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
292
diff
changeset
|
5748 # POST on "/archive" |
|
032722c3e919
extended test_archive_transcode
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
292
diff
changeset
|
5749 self.assertRaises(Exception, lambda: PostArchive( |
|
032722c3e919
extended test_archive_transcode
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
292
diff
changeset
|
5750 _REMOTE, '/patients/%s/archive' % info['ParentPatient'], { 'Transcode' : 'nope' })) |
|
032722c3e919
extended test_archive_transcode
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
292
diff
changeset
|
5751 |
|
032722c3e919
extended test_archive_transcode
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
292
diff
changeset
|
5752 z = PostArchive(_REMOTE, '/patients/%s/archive' % info['ParentPatient'], { |
|
032722c3e919
extended test_archive_transcode
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
292
diff
changeset
|
5753 'Transcode' : '1.2.840.10008.1.2.4.50', |
|
032722c3e919
extended test_archive_transcode
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
292
diff
changeset
|
5754 }) |
|
032722c3e919
extended test_archive_transcode
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
292
diff
changeset
|
5755 self.assertEqual('1.2.840.10008.1.2.4.50', GetTransferSyntax(z.read(z.namelist()[0]))) |
|
032722c3e919
extended test_archive_transcode
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
292
diff
changeset
|
5756 |
|
032722c3e919
extended test_archive_transcode
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
292
diff
changeset
|
5757 z = PostArchive(_REMOTE, '/studies/%s/archive' % info['ParentStudy'], { |
|
032722c3e919
extended test_archive_transcode
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
292
diff
changeset
|
5758 'Transcode' : '1.2.840.10008.1.2.4.51', |
|
032722c3e919
extended test_archive_transcode
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
292
diff
changeset
|
5759 }) |
|
032722c3e919
extended test_archive_transcode
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
292
diff
changeset
|
5760 self.assertEqual('1.2.840.10008.1.2.4.51', GetTransferSyntax(z.read(z.namelist()[0]))) |
|
032722c3e919
extended test_archive_transcode
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
292
diff
changeset
|
5761 |
|
032722c3e919
extended test_archive_transcode
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
292
diff
changeset
|
5762 z = PostArchive(_REMOTE, '/series/%s/archive' % info['ParentSeries'], { |
|
032722c3e919
extended test_archive_transcode
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
292
diff
changeset
|
5763 'Transcode' : '1.2.840.10008.1.2.4.57', |
|
032722c3e919
extended test_archive_transcode
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
292
diff
changeset
|
5764 }) |
|
032722c3e919
extended test_archive_transcode
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
292
diff
changeset
|
5765 self.assertEqual('1.2.840.10008.1.2.4.57', GetTransferSyntax(z.read(z.namelist()[0]))) |
|
292
e1827a4f5d3b
test_archive_transcode
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
291
diff
changeset
|
5766 |
|
293
032722c3e919
extended test_archive_transcode
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
292
diff
changeset
|
5767 |
|
032722c3e919
extended test_archive_transcode
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
292
diff
changeset
|
5768 # "/tools/create-*" |
|
032722c3e919
extended test_archive_transcode
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
292
diff
changeset
|
5769 z = PostArchive(_REMOTE, '/tools/create-archive', { |
|
032722c3e919
extended test_archive_transcode
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
292
diff
changeset
|
5770 'Resources' : [ info['ParentStudy'] ], |
|
032722c3e919
extended test_archive_transcode
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
292
diff
changeset
|
5771 'Transcode' : '1.2.840.10008.1.2.4.50', |
|
032722c3e919
extended test_archive_transcode
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
292
diff
changeset
|
5772 }) |
|
032722c3e919
extended test_archive_transcode
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
292
diff
changeset
|
5773 self.assertEqual(1, len(z.namelist())) |
|
032722c3e919
extended test_archive_transcode
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
292
diff
changeset
|
5774 self.assertEqual('1.2.840.10008.1.2.4.50', GetTransferSyntax(z.read(z.namelist()[0]))) |
|
032722c3e919
extended test_archive_transcode
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
292
diff
changeset
|
5775 |
|
032722c3e919
extended test_archive_transcode
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
292
diff
changeset
|
5776 z = PostArchive(_REMOTE, '/tools/create-media', { |
|
032722c3e919
extended test_archive_transcode
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
292
diff
changeset
|
5777 'Resources' : [ info['ParentStudy'] ], |
|
032722c3e919
extended test_archive_transcode
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
292
diff
changeset
|
5778 'Transcode' : '1.2.840.10008.1.2.4.51', |
|
032722c3e919
extended test_archive_transcode
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
292
diff
changeset
|
5779 }) |
|
032722c3e919
extended test_archive_transcode
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
292
diff
changeset
|
5780 self.assertEqual(2, len(z.namelist())) |
|
032722c3e919
extended test_archive_transcode
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
292
diff
changeset
|
5781 self.assertEqual('1.2.840.10008.1.2.4.51', GetTransferSyntax(z.read('IMAGES/IM0'))) |
|
032722c3e919
extended test_archive_transcode
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
292
diff
changeset
|
5782 |
|
032722c3e919
extended test_archive_transcode
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
292
diff
changeset
|
5783 z = PostArchive(_REMOTE, '/tools/create-media-extended', { |
|
032722c3e919
extended test_archive_transcode
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
292
diff
changeset
|
5784 'Resources' : [ info['ParentStudy'] ], |
|
032722c3e919
extended test_archive_transcode
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
292
diff
changeset
|
5785 'Transcode' : '1.2.840.10008.1.2.4.57', |
|
032722c3e919
extended test_archive_transcode
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
292
diff
changeset
|
5786 }) |
|
032722c3e919
extended test_archive_transcode
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
292
diff
changeset
|
5787 self.assertEqual(2, len(z.namelist())) |
|
032722c3e919
extended test_archive_transcode
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
292
diff
changeset
|
5788 self.assertEqual('1.2.840.10008.1.2.4.57', GetTransferSyntax(z.read('IMAGES/IM0'))) |
|
032722c3e919
extended test_archive_transcode
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
292
diff
changeset
|
5789 |
| 308 | 5790 |
|
301
6652d5720a45
test_modify_keep_source
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
300
diff
changeset
|
5791 def test_modify_keep_source(self): |
|
6652d5720a45
test_modify_keep_source
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
300
diff
changeset
|
5792 # https://groups.google.com/d/msg/orthanc-users/CgU-Wg8vDio/BY5ZWcDEAgAJ |
|
6652d5720a45
test_modify_keep_source
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
300
diff
changeset
|
5793 i = UploadInstance(_REMOTE, 'DummyCT.dcm') |
|
6652d5720a45
test_modify_keep_source
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
300
diff
changeset
|
5794 self.assertEqual(1, len(DoGet(_REMOTE, '/studies'))) |
|
6652d5720a45
test_modify_keep_source
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
300
diff
changeset
|
5795 |
|
6652d5720a45
test_modify_keep_source
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
300
diff
changeset
|
5796 j = DoPost(_REMOTE, '/studies/%s/modify' % i['ParentStudy'], { |
|
6652d5720a45
test_modify_keep_source
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
300
diff
changeset
|
5797 'Replace' : { |
|
6652d5720a45
test_modify_keep_source
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
300
diff
changeset
|
5798 'StationName' : 'TEST', |
|
6652d5720a45
test_modify_keep_source
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
300
diff
changeset
|
5799 }, |
|
6652d5720a45
test_modify_keep_source
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
300
diff
changeset
|
5800 'KeepSource' : True, |
|
6652d5720a45
test_modify_keep_source
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
300
diff
changeset
|
5801 }) |
|
6652d5720a45
test_modify_keep_source
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
300
diff
changeset
|
5802 |
|
6652d5720a45
test_modify_keep_source
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
300
diff
changeset
|
5803 s = DoGet(_REMOTE, '/studies') |
|
6652d5720a45
test_modify_keep_source
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
300
diff
changeset
|
5804 self.assertEqual(2, len(s)) |
|
6652d5720a45
test_modify_keep_source
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
300
diff
changeset
|
5805 self.assertTrue(i['ParentStudy'] in s) |
|
6652d5720a45
test_modify_keep_source
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
300
diff
changeset
|
5806 self.assertTrue(j['ID'] in s) |
|
6652d5720a45
test_modify_keep_source
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
300
diff
changeset
|
5807 |
|
6652d5720a45
test_modify_keep_source
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
300
diff
changeset
|
5808 DoDelete(_REMOTE, '/studies/%s' % j['ID']) |
|
6652d5720a45
test_modify_keep_source
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
300
diff
changeset
|
5809 self.assertEqual(1, len(DoGet(_REMOTE, '/studies'))) |
|
6652d5720a45
test_modify_keep_source
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
300
diff
changeset
|
5810 |
|
6652d5720a45
test_modify_keep_source
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
300
diff
changeset
|
5811 j = DoPost(_REMOTE, '/studies/%s/modify' % i['ParentStudy'], { |
|
6652d5720a45
test_modify_keep_source
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
300
diff
changeset
|
5812 'Replace' : { |
|
6652d5720a45
test_modify_keep_source
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
300
diff
changeset
|
5813 'StationName' : 'TEST', |
|
6652d5720a45
test_modify_keep_source
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
300
diff
changeset
|
5814 }, |
|
6652d5720a45
test_modify_keep_source
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
300
diff
changeset
|
5815 'KeepSource' : False, |
|
6652d5720a45
test_modify_keep_source
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
300
diff
changeset
|
5816 }) |
|
6652d5720a45
test_modify_keep_source
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
300
diff
changeset
|
5817 |
|
6652d5720a45
test_modify_keep_source
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
300
diff
changeset
|
5818 s = DoGet(_REMOTE, '/studies') |
|
6652d5720a45
test_modify_keep_source
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
300
diff
changeset
|
5819 self.assertEqual(1, len(s)) |
|
6652d5720a45
test_modify_keep_source
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
300
diff
changeset
|
5820 self.assertFalse(i['ParentStudy'] in s) |
|
6652d5720a45
test_modify_keep_source
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
300
diff
changeset
|
5821 self.assertTrue(j['ID'] in s) |
|
302
22b6dd0f8c84
test_modify_transcode_study
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
301
diff
changeset
|
5822 |
|
22b6dd0f8c84
test_modify_transcode_study
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
301
diff
changeset
|
5823 |
|
22b6dd0f8c84
test_modify_transcode_study
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
301
diff
changeset
|
5824 def test_modify_transcode_study(self): |
|
22b6dd0f8c84
test_modify_transcode_study
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
301
diff
changeset
|
5825 i = UploadInstance(_REMOTE, 'KarstenHilbertRF.dcm') |
|
22b6dd0f8c84
test_modify_transcode_study
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
301
diff
changeset
|
5826 self.assertEqual('1.2.840.10008.1.2.1', GetTransferSyntax( |
|
22b6dd0f8c84
test_modify_transcode_study
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
301
diff
changeset
|
5827 DoGet(_REMOTE, '/instances/%s/file' % i['ID']))) |
|
22b6dd0f8c84
test_modify_transcode_study
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
301
diff
changeset
|
5828 |
|
22b6dd0f8c84
test_modify_transcode_study
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
301
diff
changeset
|
5829 self.assertEqual(1, len(DoGet(_REMOTE, '/instances'))) |
|
22b6dd0f8c84
test_modify_transcode_study
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
301
diff
changeset
|
5830 j = DoPost(_REMOTE, '/studies/%s/modify' % i['ParentStudy'], { |
|
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|
5831 'Transcode' : '1.2.840.10008.1.2.4.50', |
|
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|
5832 'KeepSource' : False |
|
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diff
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|
5833 }) |
|
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|
5834 |
|
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diff
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|
5835 k = DoGet(_REMOTE, '/instances') |
|
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|
5836 self.assertEqual(1, len(k)) |
|
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diff
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|
5837 self.assertEqual(i['ID'], DoGet(_REMOTE, '/instances/%s/metadata?expand' % k[0]) ['ModifiedFrom']) |
|
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diff
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|
5838 self.assertEqual('1.2.840.10008.1.2.4.50', GetTransferSyntax( |
|
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|
5839 DoGet(_REMOTE, '/instances/%s/file' % k[0]))) |
|
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|
5840 |
|
305
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diff
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|
5841 |
|
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diff
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|
5842 def test_store_peer_transcoding(self): |
|
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|
5843 i = UploadInstance(_REMOTE, 'KarstenHilbertRF.dcm')['ID'] |
|
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|
5844 |
|
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|
5845 SYNTAXES = [ |
|
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|
5846 '1.2.840.10008.1.2', |
|
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|
5847 '1.2.840.10008.1.2.1', |
|
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|
5848 #'1.2.840.10008.1.2.1.99', # Deflated Explicit VR Little Endian (cannot be decoded in debug mode if Orthanc is statically linked against DCMTK 3.6.5) |
|
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|
5849 '1.2.840.10008.1.2.2', |
|
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|
5850 '1.2.840.10008.1.2.4.50', |
|
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|
5851 '1.2.840.10008.1.2.4.51', |
|
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|
5852 '1.2.840.10008.1.2.4.57', |
|
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|
5853 '1.2.840.10008.1.2.4.70', |
|
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|
5854 ] |
|
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diff
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|
5855 |
|
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diff
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|
5856 if HasGdcmPlugin(_REMOTE): |
|
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|
5857 SYNTAXES = SYNTAXES + [ |
|
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|
5858 '1.2.840.10008.1.2.4.80', # This makes DCMTK 3.6.2 crash |
|
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|
5859 '1.2.840.10008.1.2.4.81', # This makes DCMTK 3.6.2 crash |
|
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|
5860 '1.2.840.10008.1.2.4.90', # JPEG2k, unavailable without GDCM |
|
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|
5861 '1.2.840.10008.1.2.4.91', # JPEG2k, unavailable without GDCM |
|
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|
5862 ] |
|
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diff
changeset
|
5863 |
|
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diff
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|
5864 for syntax in SYNTAXES: |
|
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diff
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|
5865 body = { |
|
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|
5866 'Resources' : [ i ], |
|
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diff
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|
5867 } |
|
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diff
changeset
|
5868 |
|
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diff
changeset
|
5869 if syntax != '1.2.840.10008.1.2.1': |
|
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diff
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|
5870 body['Transcode'] = syntax |
|
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diff
changeset
|
5871 |
|
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diff
changeset
|
5872 self.assertEqual(0, len(DoGet(_LOCAL, '/instances'))) |
|
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diff
changeset
|
5873 self.assertEqual(1, len(DoGet(_REMOTE, '/instances'))) |
|
ed20ead1a8b6
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diff
changeset
|
5874 DoPost(_REMOTE, '/peers/peer/store', body, 'text/plain') |
|
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diff
changeset
|
5875 self.assertEqual(1, len(DoGet(_LOCAL, '/instances'))) |
|
ed20ead1a8b6
test_store_peer_transcoding
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diff
changeset
|
5876 self.assertEqual(1, len(DoGet(_REMOTE, '/instances'))) |
|
ed20ead1a8b6
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diff
changeset
|
5877 self.assertEqual(syntax, GetTransferSyntax( |
|
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parents:
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diff
changeset
|
5878 DoGet(_LOCAL, '/instances/%s/file' % DoGet(_LOCAL, '/instances') [0]))) |
|
ed20ead1a8b6
test_store_peer_transcoding
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parents:
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diff
changeset
|
5879 |
|
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diff
changeset
|
5880 DropOrthanc(_LOCAL) |
| 308 | 5881 |
| 5882 | |
| 295 | 5883 def test_getscu(self): |
| 307 | 5884 def CleanTarget(): |
| 5885 if os.path.isdir('/tmp/GETSCU'): | |
| 5886 shutil.rmtree('/tmp/GETSCU') | |
| 5887 os.makedirs('/tmp/GETSCU') | |
| 5888 | |
|
306
da2be3ff2db5
fix getscu binaries
Sebastien Jodogne <s.jodogne@gmail.com>
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296
diff
changeset
|
5889 env = {} |
|
da2be3ff2db5
fix getscu binaries
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diff
changeset
|
5890 if _DOCKER: |
|
da2be3ff2db5
fix getscu binaries
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diff
changeset
|
5891 # This is "getscu" from DCMTK 3.6.5 compiled using LSB, |
|
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fix getscu binaries
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diff
changeset
|
5892 # and running in a GNU/Linux distribution running DCMTK |
|
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fix getscu binaries
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296
diff
changeset
|
5893 # 3.6.0. Tell "getscu" where it can find the DICOM dictionary. |
|
da2be3ff2db5
fix getscu binaries
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diff
changeset
|
5894 env['DCMDICTPATH'] = '/usr/share/libdcmtk2/dicom.dic' |
|
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fix getscu binaries
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diff
changeset
|
5895 |
| 295 | 5896 # no transcoding required |
| 307 | 5897 UploadInstance(_REMOTE, 'Brainix/Flair/IM-0001-0001.dcm')['ID'] |
| 5898 | |
| 5899 CleanTarget() | |
| 295 | 5900 |
|
306
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fix getscu binaries
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diff
changeset
|
5901 subprocess.check_call([ |
|
da2be3ff2db5
fix getscu binaries
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296
diff
changeset
|
5902 FindExecutable('getscu'), |
|
da2be3ff2db5
fix getscu binaries
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diff
changeset
|
5903 _REMOTE['Server'], |
|
da2be3ff2db5
fix getscu binaries
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296
diff
changeset
|
5904 str(_REMOTE['DicomPort']), |
|
da2be3ff2db5
fix getscu binaries
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296
diff
changeset
|
5905 '-aec', 'ORTHANC', |
|
da2be3ff2db5
fix getscu binaries
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296
diff
changeset
|
5906 '-aet', 'ORTHANCTEST', # pretend to be the other orthanc |
| 307 | 5907 '-k', '0020,000d=2.16.840.1.113669.632.20.1211.10000357775', |
|
306
da2be3ff2db5
fix getscu binaries
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296
diff
changeset
|
5908 '-k', '0008,0052=STUDY', |
|
da2be3ff2db5
fix getscu binaries
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296
diff
changeset
|
5909 '--output-directory', '/tmp/GETSCU/' |
|
da2be3ff2db5
fix getscu binaries
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296
diff
changeset
|
5910 ], env = env) |
| 295 | 5911 |
| 311 | 5912 f1 = '/tmp/GETSCU/MR.1.3.46.670589.11.0.0.11.4.2.0.8743.5.5396.2006120114314079549' |
| 5913 self.assertTrue(os.path.isfile(f1)) | |
| 5914 with open(f1, 'rb') as f: | |
| 5915 self.assertEqual('1.2.840.10008.1.2.1', GetTransferSyntax(f.read())) | |
| 5916 | |
| 307 | 5917 CleanTarget() |
| 295 | 5918 |
| 5919 # transcoding required | |
| 311 | 5920 UploadInstance(_REMOTE, 'TransferSyntaxes/1.2.840.10008.1.2.4.50.dcm') |
| 307 | 5921 |
| 5922 subprocess.check_call([ | |
| 5923 FindExecutable('getscu'), | |
| 5924 _REMOTE['Server'], | |
| 5925 str(_REMOTE['DicomPort']), | |
| 5926 '-aec', 'ORTHANC', | |
| 5927 '-aet', 'ORTHANCTEST', # pretend to be the other orthanc | |
| 311 | 5928 '-k', '0020,000d=2.16.840.1.113669.632.20.1211.10000357775\\1.2.840.113663.1298.6234813.1.298.20000329.1115122', |
| 307 | 5929 '-k', '0008,0052=STUDY', |
| 5930 '--output-directory', '/tmp/GETSCU/' | |
| 5931 ], env = env) | |
| 5932 | |
| 311 | 5933 self.assertTrue(os.path.isfile(f1)) |
| 5934 with open(f1, 'rb') as f: | |
| 5935 self.assertEqual('1.2.840.10008.1.2.1', GetTransferSyntax(f.read())) | |
| 5936 | |
| 5937 # This file is transcoded from "1.2.840.10008.1.2.4.50" to "1.2.840.10008.1.2.1" | |
| 5938 # (LittleEndianExplicit is proposed by default by "getscu") | |
| 5939 f2 = '/tmp/GETSCU/US.1.2.840.113663.1298.1.3.715.20000329.1115326' | |
| 5940 self.assertTrue(os.path.isfile(f2)) | |
| 5941 with open(f2, 'rb') as f: | |
| 5942 self.assertEqual('1.2.840.10008.1.2.1', GetTransferSyntax(f.read())) | |
|
324
6164d39399ad
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diff
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|
5943 |
|
6164d39399ad
test_findscu_truncation
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diff
changeset
|
5944 |
|
6164d39399ad
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Sebastien Jodogne <s.jodogne@gmail.com>
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diff
changeset
|
5945 def test_findscu_truncation(self): |
|
6164d39399ad
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diff
changeset
|
5946 # https://groups.google.com/forum/#!msg/orthanc-users/FkckWAHvso8/UbRBAhQ5CwAJ |
|
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diff
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|
5947 # Fixed by: https://hg.orthanc-server.com/orthanc/rev/2724977419fb |
|
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diff
changeset
|
5948 UploadInstance(_REMOTE, 'Multiframe.dcm') |
|
6164d39399ad
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diff
changeset
|
5949 UploadInstance(_REMOTE, 'ColorTestImageJ.dcm') |
|
6164d39399ad
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diff
changeset
|
5950 |
|
6164d39399ad
test_findscu_truncation
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diff
changeset
|
5951 study = '1.3.46.670589.7.5.8.80001255161.20000323.151537.1' |
|
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diff
changeset
|
5952 |
|
6164d39399ad
test_findscu_truncation
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diff
changeset
|
5953 i = CallFindScu([ '-k', '0008,0052=STUDY', '-k', 'StudyInstanceUID' ]) |
|
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changeset
|
5954 result = re.findall('\(0020,000d\).*?\[(.*?)\]', i) |
|
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changeset
|
5955 self.assertEqual(2, len(result)) |
|
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diff
changeset
|
5956 |
|
6164d39399ad
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diff
changeset
|
5957 # The "StudyInstanceUID" is set as a list of 5 times the same |
|
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changeset
|
5958 # study, leading to a string of 249 characters |
|
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diff
changeset
|
5959 i = CallFindScu([ '-k', '0008,0052=STUDY', '-k', |
|
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changeset
|
5960 'StudyInstanceUID=%s\\%s\\%s\\%s\\%s' % (( study, ) * 5) ]) |
|
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changeset
|
5961 result = re.findall('\(0020,000d\).*?\[(.*?)\]', i) |
|
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changeset
|
5962 self.assertEqual(1, len(result)) |
|
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diff
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|
5963 |
|
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changeset
|
5964 # The "StudyInstanceUID" is set as a list of 6 times the same |
|
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5965 # study, leading to a string of 299 characters. In Orthanc <= |
|
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changeset
|
5966 # 1.7.2, this is above the value of ORTHANC_MAXIMUM_TAG_LENGTH |
|
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5967 # == 256, and is thus wiped out by C-FIND SCP. As a |
|
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diff
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|
5968 # consequence, Orthanc <= 1.7.2 doesn't apply the filter on |
|
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|
5969 # "StudyInstanceUID" and returns all the available |
|
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diff
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|
5970 # studies (i.e. 2). This issue was fixed in Orthanc 1.7.3. |
|
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|
5971 i = CallFindScu([ '-k', '0008,0052=STUDY', '-k', |
|
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diff
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|
5972 'StudyInstanceUID=%s\\%s\\%s\\%s\\%s\\%s' % (( study, ) * 6) ]) |
|
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5973 result = re.findall('\(0020,000d\).*?\[(.*?)\]', i) |
|
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5974 self.assertEqual(1, len(result)) |
|
328
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|
5975 |
|
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diff
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|
5976 |
|
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|
5977 def test_store_compressed(self): |
|
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5978 with open(GetDatabasePath('DummyCT.dcm'), 'rb') as f: |
|
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diff
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|
5979 dicom = f.read() |
|
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diff
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|
5980 i = DoPost(_REMOTE, '/instances', dicom) ['ID'] |
|
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|
5981 sourceSize = len(dicom) |
|
324
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|
5982 |
|
328
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diff
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|
5983 self.assertEqual(0, len(DoGet(_LOCAL, '/instances'))) |
|
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|
5984 self.assertEqual(1, len(DoGet(_REMOTE, '/instances'))) |
|
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|
5985 |
|
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diff
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|
5986 # Sending to the local Orthanc 0.8.6 server, without compression: OK |
|
8a462f9c5a97
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|
5987 jobId = MonitorJob2(_REMOTE, lambda: DoPost( |
|
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diff
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|
5988 _REMOTE, '/peers/peer/store', { |
|
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|
5989 'Resources' : [ i ], |
|
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|
5990 'Synchronous' : False, |
|
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diff
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|
5991 })) |
|
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diff
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|
5992 |
|
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diff
changeset
|
5993 job = DoGet(_REMOTE, '/jobs/%s' % jobId) |
|
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changeset
|
5994 self.assertFalse(job['Content']['Compress']) |
|
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|
5995 self.assertEqual('', job['Content']['Peer'][2]) # Password must not be reported |
|
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diff
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|
5996 self.assertEqual(str(sourceSize), job['Content']['Size']) |
|
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|
5997 |
|
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diff
changeset
|
5998 self.assertEqual(1, len(DoGet(_LOCAL, '/instances'))) |
|
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diff
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|
5999 DropOrthanc(_LOCAL) |
|
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diff
changeset
|
6000 |
|
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diff
changeset
|
6001 # Sending to the local Orthanc 0.8.6 server, with compression: |
|
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diff
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|
6002 # Not supported by Orthanc 0.8.6 => failure |
|
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diff
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|
6003 self.assertRaises(Exception, lambda: DoPost(_REMOTE, '/peers/peer/store', { |
|
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diff
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|
6004 'Resources' : [ i ], |
|
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test_store_compressed
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diff
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|
6005 'Compress' : True, |
|
8a462f9c5a97
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diff
changeset
|
6006 })) |
|
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diff
changeset
|
6007 self.assertEqual(0, len(DoGet(_LOCAL, '/instances'))) |
|
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diff
changeset
|
6008 |
|
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test_store_compressed
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diff
changeset
|
6009 # Sending to the tested remote server, with compression: OK |
|
8a462f9c5a97
test_store_compressed
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parents:
327
diff
changeset
|
6010 jobId = MonitorJob2(_REMOTE, lambda: DoPost( |
|
8a462f9c5a97
test_store_compressed
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327
diff
changeset
|
6011 _REMOTE, '/peers/self/store', { |
|
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test_store_compressed
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327
diff
changeset
|
6012 'Resources' : [ i ], |
|
8a462f9c5a97
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diff
changeset
|
6013 'Compress' : True, |
|
8a462f9c5a97
test_store_compressed
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diff
changeset
|
6014 'Synchronous' : False, |
|
8a462f9c5a97
test_store_compressed
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parents:
327
diff
changeset
|
6015 })) |
|
8a462f9c5a97
test_store_compressed
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
327
diff
changeset
|
6016 |
|
8a462f9c5a97
test_store_compressed
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327
diff
changeset
|
6017 job = DoGet(_REMOTE, '/jobs/%s' % jobId) |
|
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diff
changeset
|
6018 self.assertTrue(job['Content']['Compress']) |
|
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327
diff
changeset
|
6019 |
|
8a462f9c5a97
test_store_compressed
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327
diff
changeset
|
6020 # Compression must have divided the size of the sent data at least twice |
|
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diff
changeset
|
6021 self.assertLess(int(job['Content']['Size']), sourceSize / 2) |
| 332 | 6022 |
| 6023 | |
| 6024 def test_move_ambra(self): | |
| 6025 # "Orthanc + Ambra: Query/Retrieve" (2020-08-25) | |
| 6026 # https://groups.google.com/g/orthanc-users/c/yIUnZ9v9-Zs/m/GQPXiAOiCQAJ | |
| 6027 | |
| 6028 UploadInstance(_REMOTE, '2019-06-17-VedranZdesic.dcm') | |
| 6029 | |
| 6030 self.assertFalse(MonitorJob(_REMOTE, lambda: CallMoveScu([ | |
| 6031 '--study', | |
| 6032 '-k', 'StudyInstanceUID=' | |
| 6033 ]))) | |
| 6034 | |
| 6035 self.assertFalse(MonitorJob(_REMOTE, lambda: CallMoveScu([ | |
| 6036 '--study', | |
| 6037 '-k', 'AccessionNumber=', | |
| 6038 ]))) | |
| 6039 | |
| 6040 self.assertFalse(MonitorJob(_REMOTE, lambda: CallMoveScu([ | |
| 6041 '--study', | |
| 6042 '-k', 'AccessionNumber=', | |
| 6043 '-k', 'StudyInstanceUID=' | |
| 6044 ]))) | |
| 6045 | |
| 6046 self.assertEqual(0, len(DoGet(_LOCAL, '/instances'))) | |
| 6047 self.assertTrue(MonitorJob(_REMOTE, lambda: CallMoveScu([ | |
| 6048 '--study', | |
| 6049 '-k', 'AccessionNumber=CT16000988', | |
| 6050 '-k', 'StudyInstanceUID=', | |
| 6051 ]))) | |
| 6052 self.assertEqual(1, len(DoGet(_LOCAL, '/instances'))) | |
| 6053 DropOrthanc(_LOCAL) | |
| 6054 | |
| 6055 self.assertEqual(0, len(DoGet(_LOCAL, '/instances'))) | |
| 6056 self.assertTrue(MonitorJob(_REMOTE, lambda: CallMoveScu([ | |
| 6057 '--study', | |
| 6058 '-k', 'AccessionNumber=CT16000988', | |
| 6059 '-k', 'StudyInstanceUID=1.2.840.113619.2.278.3.4194965761.659.1468842739.39', | |
| 6060 ]))) | |
| 6061 self.assertEqual(1, len(DoGet(_LOCAL, '/instances'))) | |
| 6062 DropOrthanc(_LOCAL) | |
| 6063 | |
| 6064 # This fails on Orthanc <= 1.7.3 | |
| 6065 self.assertEqual(0, len(DoGet(_LOCAL, '/instances'))) | |
| 6066 self.assertTrue(MonitorJob(_REMOTE, lambda: CallMoveScu([ | |
| 6067 '--study', | |
| 6068 '-k', 'AccessionNumber=', | |
| 6069 '-k', 'StudyInstanceUID=1.2.840.113619.2.278.3.4194965761.659.1468842739.39' | |
| 6070 ]))) | |
| 6071 self.assertEqual(1, len(DoGet(_LOCAL, '/instances'))) | |
| 6072 DropOrthanc(_LOCAL) | |
|
333
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parents:
332
diff
changeset
|
6073 |
|
695be643b0f4
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332
diff
changeset
|
6074 |
|
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diff
changeset
|
6075 def test_decode_elscint(self): |
|
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diff
changeset
|
6076 # https://groups.google.com/g/orthanc-users/c/d9anAx6lSis/m/qEzm1x3PAAAJ |
|
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diff
changeset
|
6077 a = UploadInstance(_REMOTE, '2020-09-12-ELSCINT1-PMSCT_RLE1.dcm')['ID'] |
|
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parents:
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diff
changeset
|
6078 b = UploadInstance(_REMOTE, '2020-09-11-Christopher-ELSCINT1-Raw.dcm')['ID'] |
|
695be643b0f4
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Sebastien Jodogne <s.jodogne@gmail.com>
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diff
changeset
|
6079 |
|
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test_decode_elscint
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parents:
332
diff
changeset
|
6080 im = GetImage(_REMOTE, '/instances/%s/frames/0/preview' % a) |
|
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diff
changeset
|
6081 self.assertEqual("L", im.mode) |
|
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diff
changeset
|
6082 self.assertEqual(512, im.size[0]) |
|
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diff
changeset
|
6083 self.assertEqual(512, im.size[1]) |
|
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diff
changeset
|
6084 |
|
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diff
changeset
|
6085 im = GetImage(_REMOTE, '/instances/%s/frames/0/preview' % b) |
|
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diff
changeset
|
6086 self.assertEqual("L", im.mode) |
|
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diff
changeset
|
6087 self.assertEqual(512, im.size[0]) |
|
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diff
changeset
|
6088 self.assertEqual(512, im.size[1]) |
|
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diff
changeset
|
6089 |
|
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diff
changeset
|
6090 # The two tests below fail on Orthanc <= 1.7.3 |
|
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diff
changeset
|
6091 raw = DoGet(_REMOTE, '/instances/%s/frames/0/raw' % a) |
|
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diff
changeset
|
6092 self.assertEqual(512 * 512 * 2, len(raw)) |
|
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diff
changeset
|
6093 |
|
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diff
changeset
|
6094 raw = DoGet(_REMOTE, '/instances/%s/frames/0/raw' % b) |
|
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diff
changeset
|
6095 self.assertEqual(512 * 512 * 2, len(raw)) |
|
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diff
changeset
|
6096 |
|
334
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diff
changeset
|
6097 |
|
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diff
changeset
|
6098 def test_rest_modalities_in_study_2(self): |
|
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changeset
|
6099 # Problem reported by Alain Mazy on 2020-09-15 |
|
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changeset
|
6100 UploadInstance(_REMOTE, 'Comunix/Ct/IM-0001-0001.dcm') |
|
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diff
changeset
|
6101 UploadInstance(_REMOTE, 'Comunix/Pet/IM-0001-0001.dcm') |
|
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diff
changeset
|
6102 |
|
335
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diff
changeset
|
6103 i = CallFindScu([ '-k', '0008,0052=STUDY', '-k', '0020,000d=', '-k', '0008,0061=' ]) |
|
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changeset
|
6104 modalitiesInStudy = re.findall('\(0008,0061\).*?\[(.*?)\]', i) |
|
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changeset
|
6105 self.assertEqual(1, len(modalitiesInStudy)) |
|
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diff
changeset
|
6106 self.assertEqual('CT\\PT ', modalitiesInStudy[0]) |
|
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changeset
|
6107 |
|
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diff
changeset
|
6108 for i in [ '', 'CT', 'PT', 'UX', 'UX\\MR', 'CT\\PT', 'UX\\PT', 'CT\\PT', 'UX\\CT\\PT' ]: |
|
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changeset
|
6109 # The empty string '' corresponds to universal matching. |
|
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|
6110 # The case where "i == 'CT'" failed in Orthanc <= 1.7.3. |
|
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|
6111 |
|
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changeset
|
6112 if i in [ 'UX', 'UX\\MR' ]: |
|
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|
6113 expected = 0 |
|
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|
6114 else: |
|
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|
6115 expected = 1 |
|
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|
6116 |
|
334
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test_rest_modalities_in_study_2
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diff
changeset
|
6117 a = DoPost(_REMOTE, '/tools/find', { 'Level' : 'Study', |
|
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|
6118 'Query' : { 'ModalitiesInStudy' : i }}) |
|
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|
6119 self.assertEqual(expected, len(a)) |
|
334
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test_rest_modalities_in_study_2
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diff
changeset
|
6120 |
|
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test_rest_modalities_in_study_2
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diff
changeset
|
6121 i = CallFindScu([ '-k', '0008,0052=STUDY', '-k', '0020,000d=', '-k', '0008,0061=%s' % i ]) |
|
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diff
changeset
|
6122 studyInstanceUid = re.findall('\(0020,000d\).*?\[(.*?)\]', i) |
|
335
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changeset
|
6123 self.assertEqual(expected, len(studyInstanceUid)) |
|
337
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diff
changeset
|
6124 |
|
ec13ace43bde
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diff
changeset
|
6125 |
|
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changeset
|
6126 def test_webdav(self): |
|
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|
6127 self.assertRaises(Exception, lambda: DoPropFind(_REMOTE, '/webdav/', 2)) |
|
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|
6128 |
|
342
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changeset
|
6129 for suffix in [ '', '/' ]: |
|
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|
6130 f = DoPropFind(_REMOTE, '/webdav' + suffix, 0) |
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changeset
|
6131 self.assertEqual(1, len(f)) |
|
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|
6132 self.assertTrue('/webdav/' in f.keys()) |
|
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|
6133 self.assertTrue(f['/webdav/']['folder']) |
|
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changeset
|
6134 self.assertEqual('webdav', f['/webdav/']['displayname']) |
|
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changeset
|
6135 |
|
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changeset
|
6136 f = DoPropFind(_REMOTE, '/webdav' + suffix, 1) |
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changeset
|
6137 self.assertEqual(6, len(f)) |
|
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|
6138 self.assertTrue(f['/webdav/']['folder']) |
|
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changeset
|
6139 self.assertEqual('webdav', f['/webdav/']['displayname']) |
|
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changeset
|
6140 |
|
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changeset
|
6141 for i in [ 'by-dates', 'by-patients', 'by-studies', 'by-uids', 'uploads' ]: |
|
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changeset
|
6142 self.assertTrue(f['/webdav/%s' % i]['folder']) |
|
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changeset
|
6143 self.assertEqual(i, f['/webdav/%s' % i]['displayname']) |
|
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changeset
|
6144 |
|
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changeset
|
6145 for depth in [ 0, 1 ]: |
|
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changeset
|
6146 for suffix2 in [ '', '/' ]: |
|
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changeset
|
6147 g = DoPropFind(_REMOTE, '/webdav/%s%s' % (i, suffix2), depth) |
|
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diff
changeset
|
6148 |
|
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changeset
|
6149 if i == 'uploads': |
|
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changeset
|
6150 # Empty folders might still exist in "/uploads/" |
|
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changeset
|
6151 self.assertTrue('/webdav/uploads/' in g) |
|
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changeset
|
6152 self.assertEqual('uploads', g['/webdav/uploads/']['displayname']) |
|
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changeset
|
6153 for j in g.items(): |
|
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|
6154 self.assertTrue(g.items()[0][1]['folder']) |
|
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|
6155 else: |
|
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changeset
|
6156 self.assertEqual(1, len(g)) |
|
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changeset
|
6157 self.assertEqual('/webdav/%s/' % i, g.items()[0][0]) |
|
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changeset
|
6158 self.assertTrue(g.items()[0][1]['folder']) |
|
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diff
changeset
|
6159 self.assertEqual(i, g.items()[0][1]['displayname']) |
|
341
66a36befb208
extending Toolbox.DoPropFind()
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337
diff
changeset
|
6160 |
|
342
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changeset
|
6161 self.assertEqual(0, len(DoGet(_REMOTE, '/patients'))) |
|
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changeset
|
6162 with open(GetDatabasePath('DummyCT.dcm'), 'rb') as f: |
|
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changeset
|
6163 DoPut(_REMOTE, '/webdav/uploads/dummy', f.read(), 'text/plain') |
|
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changeset
|
6164 |
|
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diff
changeset
|
6165 while len(DoGet(_REMOTE, '/patients')) == 0: |
|
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changeset
|
6166 time.sleep(0.01) |
|
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changeset
|
6167 self.assertEqual(1, len(DoGet(_REMOTE, '/patients'))) |
|
337
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diff
changeset
|
6168 |
|
349
698898a93a10
test_log_categories
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parents:
348
diff
changeset
|
6169 |
|
698898a93a10
test_log_categories
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diff
changeset
|
6170 def test_log_categories(self): |
| 350 | 6171 original = DoGet(_REMOTE, '/tools/log-level-http') |
|
349
698898a93a10
test_log_categories
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diff
changeset
|
6172 |
| 350 | 6173 DoPut(_REMOTE, '/tools/log-level-http', 'default') |
| 6174 self.assertEqual('default', DoGet(_REMOTE, '/tools/log-level-http')) | |
|
349
698898a93a10
test_log_categories
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diff
changeset
|
6175 DoGet(_REMOTE, '/system') |
|
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diff
changeset
|
6176 |
| 350 | 6177 DoPut(_REMOTE, '/tools/log-level-http', 'verbose') |
| 6178 self.assertEqual('verbose', DoGet(_REMOTE, '/tools/log-level-http')) | |
|
349
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test_log_categories
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diff
changeset
|
6179 DoGet(_REMOTE, '/system') |
|
698898a93a10
test_log_categories
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diff
changeset
|
6180 |
| 350 | 6181 DoPut(_REMOTE, '/tools/log-level-http', 'trace') |
| 6182 self.assertEqual('trace', DoGet(_REMOTE, '/tools/log-level-http')) | |
|
349
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test_log_categories
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diff
changeset
|
6183 DoGet(_REMOTE, '/system') |
|
698898a93a10
test_log_categories
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diff
changeset
|
6184 |
| 350 | 6185 self.assertRaises(Exception, lambda: DoPut(_REMOTE, '/tools/log-level-http', 'nope')) |
|
349
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test_log_categories
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diff
changeset
|
6186 |
|
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diff
changeset
|
6187 # Switch back to the original log level |
| 350 | 6188 DoPut(_REMOTE, '/tools/log-level-http', original) |
| 6189 | |
| 6190 for c in [ 'generic', 'http', 'dicom', 'plugins', 'sqlite', 'lua', 'jobs' ]: | |
|
349
698898a93a10
test_log_categories
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diff
changeset
|
6191 DoPut(_REMOTE, '/tools/log-level-%s' % c, DoGet(_REMOTE, '/tools/log-level-%s' % c)) |
|
698898a93a10
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diff
changeset
|
6192 |
|
698898a93a10
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diff
changeset
|
6193 self.assertRaises(Exception, lambda: DoPut(_REMOTE, '/tools/log-level-nope', 'default')) |
| 357 | 6194 |
| 6195 | |
| 6196 def test_upload_zip(self): | |
| 6197 f = StringIO() | |
| 6198 with zipfile.ZipFile(f, 'w') as z: | |
| 6199 z.writestr('hello/world/invalid.txt', 'Hello world') | |
| 6200 with open(GetDatabasePath('DummyCT.dcm'), 'rb') as g: | |
| 6201 c = g.read() | |
| 6202 z.writestr('hello/world/dicom1.dcm', c) | |
| 6203 z.writestr('hello/world/dicom2.dcm', c) | |
| 6204 | |
| 6205 f.seek(0) | |
| 6206 i = DoPost(_REMOTE, '/instances', f.read()) | |
| 6207 | |
| 6208 self.assertEqual(2, len(i)) | |
| 6209 self.assertEqual(i[0], i[1]) | |
| 6210 self.assertEqual(6, len(i[0])) | |
| 6211 self.assertEqual('66a662ce-7430e543-bad44d47-0dc5a943-ec7a538d', i[0]['ID']) | |
| 6212 self.assertEqual('f2635388-f01d497a-15f7c06b-ad7dba06-c4c599fe', i[0]['ParentSeries']) | |
| 6213 self.assertEqual('b9c08539-26f93bde-c81ab0d7-bffaf2cb-a4d0bdd0', i[0]['ParentStudy']) | |
| 6214 self.assertEqual('6816cb19-844d5aee-85245eba-28e841e6-2414fae2', i[0]['ParentPatient']) | |
| 6215 self.assertEqual('/instances/66a662ce-7430e543-bad44d47-0dc5a943-ec7a538d', i[0]['Path']) | |
| 6216 | |
| 6217 # Both are "Success" (instead of one "AlreadyStored"), because "OverwriteInstance" is true | |
| 6218 self.assertEqual('Success', i[0]['Status']) | |
|
361
6cf5cc4d0a99
test_transfer_syntax_no_metaheader
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diff
changeset
|
6219 |
|
6cf5cc4d0a99
test_transfer_syntax_no_metaheader
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diff
changeset
|
6220 |
|
6cf5cc4d0a99
test_transfer_syntax_no_metaheader
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359
diff
changeset
|
6221 def test_transfer_syntax_no_metaheader(self): |
|
6cf5cc4d0a99
test_transfer_syntax_no_metaheader
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diff
changeset
|
6222 a = UploadInstance(_REMOTE, 'TransferSyntaxes/1.2.840.10008.1.2.dcm')['ID'] |
|
6cf5cc4d0a99
test_transfer_syntax_no_metaheader
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diff
changeset
|
6223 m = DoGet(_REMOTE, '/instances/%s/metadata?expand' % a) |
|
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diff
changeset
|
6224 self.assertEqual('1.2.840.10008.5.1.4.1.1.4', m['SopClassUid']) |
|
6cf5cc4d0a99
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diff
changeset
|
6225 |
|
6cf5cc4d0a99
test_transfer_syntax_no_metaheader
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diff
changeset
|
6226 # This fails on Orthanc <= 1.8.1 |
|
6cf5cc4d0a99
test_transfer_syntax_no_metaheader
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diff
changeset
|
6227 self.assertTrue('TransferSyntax' in m) |
|
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diff
changeset
|
6228 self.assertEqual('1.2.840.10008.1.2', m['TransferSyntax']) |
|
368
2cc40121c3a8
test_upload_multipart_1 and test_upload_multipart_2
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diff
changeset
|
6229 |
|
2cc40121c3a8
test_upload_multipart_1 and test_upload_multipart_2
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diff
changeset
|
6230 |
|
2cc40121c3a8
test_upload_multipart_1 and test_upload_multipart_2
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diff
changeset
|
6231 def test_upload_multipart_1(self): |
|
2cc40121c3a8
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changeset
|
6232 # This tests the "Upload" button in Orthanc Explorer |
|
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changeset
|
6233 |
|
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test_upload_multipart_1 and test_upload_multipart_2
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diff
changeset
|
6234 def EncodeChunk(data, boundary, filename): |
|
2cc40121c3a8
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changeset
|
6235 return (('--%s\r\n' + |
|
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test_upload_multipart_1 and test_upload_multipart_2
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diff
changeset
|
6236 'Content-Disposition : form-data ; name ="files[]" ; filename = "%s" \r\n' + |
|
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test_upload_multipart_1 and test_upload_multipart_2
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diff
changeset
|
6237 '\r\n%s\r\n') % (boundary, filename, data)) |
|
2cc40121c3a8
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diff
changeset
|
6238 |
|
2cc40121c3a8
test_upload_multipart_1 and test_upload_multipart_2
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
363
diff
changeset
|
6239 with open(GetDatabasePath('DummyCT.dcm'), 'rb') as f: |
|
2cc40121c3a8
test_upload_multipart_1 and test_upload_multipart_2
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
363
diff
changeset
|
6240 dcm1 = f.read() |
|
2cc40121c3a8
test_upload_multipart_1 and test_upload_multipart_2
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
363
diff
changeset
|
6241 |
|
2cc40121c3a8
test_upload_multipart_1 and test_upload_multipart_2
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
363
diff
changeset
|
6242 with open(GetDatabasePath('ColorTestMalaterre.dcm'), 'rb') as f: |
|
2cc40121c3a8
test_upload_multipart_1 and test_upload_multipart_2
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
363
diff
changeset
|
6243 dcm2 = f.read() |
|
2cc40121c3a8
test_upload_multipart_1 and test_upload_multipart_2
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
363
diff
changeset
|
6244 |
|
2cc40121c3a8
test_upload_multipart_1 and test_upload_multipart_2
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
363
diff
changeset
|
6245 self.assertEqual(0, len(DoGet(_REMOTE, '/instances'))) |
|
2cc40121c3a8
test_upload_multipart_1 and test_upload_multipart_2
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
363
diff
changeset
|
6246 |
|
2cc40121c3a8
test_upload_multipart_1 and test_upload_multipart_2
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
363
diff
changeset
|
6247 boundary = '----WebKitFormBoundarypJDNQqJPoXiorRmQ' |
|
2cc40121c3a8
test_upload_multipart_1 and test_upload_multipart_2
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
363
diff
changeset
|
6248 m = DoPost(_REMOTE, '/instances', (EncodeChunk(dcm1, boundary, 'DummyCT.dcm') + |
|
2cc40121c3a8
test_upload_multipart_1 and test_upload_multipart_2
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
363
diff
changeset
|
6249 EncodeChunk(dcm2, boundary, 'ColorTestMalaterre.dcm') + |
|
2cc40121c3a8
test_upload_multipart_1 and test_upload_multipart_2
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
363
diff
changeset
|
6250 '--' + boundary + '--'), headers = { |
|
2cc40121c3a8
test_upload_multipart_1 and test_upload_multipart_2
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
363
diff
changeset
|
6251 'Content-Type' : 'multipart/form-data ; boundary = %s ' % boundary, |
|
2cc40121c3a8
test_upload_multipart_1 and test_upload_multipart_2
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
363
diff
changeset
|
6252 'X-Requested-With' : 'XMLHttpRequest', |
|
2cc40121c3a8
test_upload_multipart_1 and test_upload_multipart_2
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
363
diff
changeset
|
6253 }) |
|
2cc40121c3a8
test_upload_multipart_1 and test_upload_multipart_2
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
363
diff
changeset
|
6254 |
|
2cc40121c3a8
test_upload_multipart_1 and test_upload_multipart_2
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
363
diff
changeset
|
6255 self.assertEqual(2, len(DoGet(_REMOTE, '/instances'))) |
|
2cc40121c3a8
test_upload_multipart_1 and test_upload_multipart_2
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
363
diff
changeset
|
6256 |
|
2cc40121c3a8
test_upload_multipart_1 and test_upload_multipart_2
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
363
diff
changeset
|
6257 |
|
2cc40121c3a8
test_upload_multipart_1 and test_upload_multipart_2
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
363
diff
changeset
|
6258 def test_upload_multipart_2(self): |
|
2cc40121c3a8
test_upload_multipart_1 and test_upload_multipart_2
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
363
diff
changeset
|
6259 # This tests the "maxChunkSize" option of "jQuery File Upload |
|
2cc40121c3a8
test_upload_multipart_1 and test_upload_multipart_2
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
363
diff
changeset
|
6260 # 5.12", whose source code can be found in: |
|
2cc40121c3a8
test_upload_multipart_1 and test_upload_multipart_2
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
363
diff
changeset
|
6261 # "OrthancServer/OrthancExplorer/libs/jquery-file-upload/" |
|
2cc40121c3a8
test_upload_multipart_1 and test_upload_multipart_2
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
363
diff
changeset
|
6262 |
|
2cc40121c3a8
test_upload_multipart_1 and test_upload_multipart_2
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
363
diff
changeset
|
6263 def EncodeBody(data, boundary, filename): |
|
2cc40121c3a8
test_upload_multipart_1 and test_upload_multipart_2
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
363
diff
changeset
|
6264 return (('--%s\r\n' + |
|
2cc40121c3a8
test_upload_multipart_1 and test_upload_multipart_2
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
363
diff
changeset
|
6265 'Content-Disposition: form-data; name="files[]"; filename="%s"\r\n' + |
|
2cc40121c3a8
test_upload_multipart_1 and test_upload_multipart_2
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
363
diff
changeset
|
6266 '\r\n%s\r\n--%s') % (boundary, filename, data, boundary)) |
|
2cc40121c3a8
test_upload_multipart_1 and test_upload_multipart_2
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
363
diff
changeset
|
6267 |
|
2cc40121c3a8
test_upload_multipart_1 and test_upload_multipart_2
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
363
diff
changeset
|
6268 with open(GetDatabasePath('DummyCT.dcm'), 'rb') as f: |
|
2cc40121c3a8
test_upload_multipart_1 and test_upload_multipart_2
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
363
diff
changeset
|
6269 dcm = f.read() |
|
2cc40121c3a8
test_upload_multipart_1 and test_upload_multipart_2
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
363
diff
changeset
|
6270 |
|
2cc40121c3a8
test_upload_multipart_1 and test_upload_multipart_2
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
363
diff
changeset
|
6271 with open(GetDatabasePath('ColorTestMalaterre.dcm'), 'rb') as f: |
|
2cc40121c3a8
test_upload_multipart_1 and test_upload_multipart_2
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
363
diff
changeset
|
6272 dcm2 = f.read() |
|
2cc40121c3a8
test_upload_multipart_1 and test_upload_multipart_2
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
363
diff
changeset
|
6273 |
|
2cc40121c3a8
test_upload_multipart_1 and test_upload_multipart_2
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
363
diff
changeset
|
6274 boundary = '----WebKitFormBoundarypJDNQqJPoXiorRmQ' |
|
2cc40121c3a8
test_upload_multipart_1 and test_upload_multipart_2
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
363
diff
changeset
|
6275 |
|
2cc40121c3a8
test_upload_multipart_1 and test_upload_multipart_2
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
363
diff
changeset
|
6276 self.assertEqual(0, len(DoGet(_REMOTE, '/instances'))) |
|
2cc40121c3a8
test_upload_multipart_1 and test_upload_multipart_2
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
363
diff
changeset
|
6277 m = DoPost(_REMOTE, '/instances', |
|
2cc40121c3a8
test_upload_multipart_1 and test_upload_multipart_2
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
363
diff
changeset
|
6278 EncodeBody(dcm[0:1000], boundary, 'DummyCT.dcm'), |
|
2cc40121c3a8
test_upload_multipart_1 and test_upload_multipart_2
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
363
diff
changeset
|
6279 headers = { |
|
2cc40121c3a8
test_upload_multipart_1 and test_upload_multipart_2
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
363
diff
changeset
|
6280 'Content-Type' : 'multipart/form-data; boundary=%s' % boundary, |
|
2cc40121c3a8
test_upload_multipart_1 and test_upload_multipart_2
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
363
diff
changeset
|
6281 'X-Requested-With' : 'XMLHttpRequest', |
|
2cc40121c3a8
test_upload_multipart_1 and test_upload_multipart_2
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
363
diff
changeset
|
6282 'X-File-Name' : 'DummyCT.dcm', |
|
2cc40121c3a8
test_upload_multipart_1 and test_upload_multipart_2
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
363
diff
changeset
|
6283 'X-File-Size' : str(len(dcm)), |
|
2cc40121c3a8
test_upload_multipart_1 and test_upload_multipart_2
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
363
diff
changeset
|
6284 }) |
|
2cc40121c3a8
test_upload_multipart_1 and test_upload_multipart_2
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
363
diff
changeset
|
6285 |
|
2cc40121c3a8
test_upload_multipart_1 and test_upload_multipart_2
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
363
diff
changeset
|
6286 self.assertEqual(0, len(DoGet(_REMOTE, '/instances'))) |
|
2cc40121c3a8
test_upload_multipart_1 and test_upload_multipart_2
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
363
diff
changeset
|
6287 m = DoPost(_REMOTE, '/instances', |
|
2cc40121c3a8
test_upload_multipart_1 and test_upload_multipart_2
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
363
diff
changeset
|
6288 EncodeBody(dcm[1000:2000], boundary, 'DummyCT.dcm'), |
|
2cc40121c3a8
test_upload_multipart_1 and test_upload_multipart_2
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
363
diff
changeset
|
6289 headers = { |
|
2cc40121c3a8
test_upload_multipart_1 and test_upload_multipart_2
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
363
diff
changeset
|
6290 'Content-Type' : 'multipart/form-data; boundary=%s' % boundary, |
|
2cc40121c3a8
test_upload_multipart_1 and test_upload_multipart_2
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
363
diff
changeset
|
6291 'X-Requested-With' : 'XMLHttpRequest', |
|
2cc40121c3a8
test_upload_multipart_1 and test_upload_multipart_2
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
363
diff
changeset
|
6292 'X-File-Name' : 'DummyCT.dcm', |
|
2cc40121c3a8
test_upload_multipart_1 and test_upload_multipart_2
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
363
diff
changeset
|
6293 'X-File-Size' : str(len(dcm)), |
|
2cc40121c3a8
test_upload_multipart_1 and test_upload_multipart_2
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
363
diff
changeset
|
6294 }) |
|
2cc40121c3a8
test_upload_multipart_1 and test_upload_multipart_2
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
363
diff
changeset
|
6295 self.assertEqual(0, len(DoGet(_REMOTE, '/instances'))) |
|
2cc40121c3a8
test_upload_multipart_1 and test_upload_multipart_2
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
363
diff
changeset
|
6296 |
|
2cc40121c3a8
test_upload_multipart_1 and test_upload_multipart_2
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
363
diff
changeset
|
6297 m = DoPost(_REMOTE, '/instances', |
|
2cc40121c3a8
test_upload_multipart_1 and test_upload_multipart_2
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
363
diff
changeset
|
6298 EncodeBody(dcm2, boundary, 'ColorTestMalaterre.dcm'), |
|
2cc40121c3a8
test_upload_multipart_1 and test_upload_multipart_2
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
363
diff
changeset
|
6299 headers = { |
|
2cc40121c3a8
test_upload_multipart_1 and test_upload_multipart_2
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
363
diff
changeset
|
6300 'Content-Type' : 'multipart/form-data; boundary=%s' % boundary, |
|
2cc40121c3a8
test_upload_multipart_1 and test_upload_multipart_2
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
363
diff
changeset
|
6301 'X-Requested-With' : 'XMLHttpRequest', |
|
2cc40121c3a8
test_upload_multipart_1 and test_upload_multipart_2
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
363
diff
changeset
|
6302 'X-File-Name' : 'ColorTestMalaterre.dcm', |
|
2cc40121c3a8
test_upload_multipart_1 and test_upload_multipart_2
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
363
diff
changeset
|
6303 'X-File-Size' : str(len(dcm2)), |
|
2cc40121c3a8
test_upload_multipart_1 and test_upload_multipart_2
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
363
diff
changeset
|
6304 }) |
|
2cc40121c3a8
test_upload_multipart_1 and test_upload_multipart_2
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
363
diff
changeset
|
6305 |
|
2cc40121c3a8
test_upload_multipart_1 and test_upload_multipart_2
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
363
diff
changeset
|
6306 self.assertEqual(1, len(DoGet(_REMOTE, '/instances'))) |
|
2cc40121c3a8
test_upload_multipart_1 and test_upload_multipart_2
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
363
diff
changeset
|
6307 |
|
2cc40121c3a8
test_upload_multipart_1 and test_upload_multipart_2
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
363
diff
changeset
|
6308 # Upload the last chunk => the file is now entirely available |
|
2cc40121c3a8
test_upload_multipart_1 and test_upload_multipart_2
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
363
diff
changeset
|
6309 m = DoPost(_REMOTE, '/instances', |
|
2cc40121c3a8
test_upload_multipart_1 and test_upload_multipart_2
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
363
diff
changeset
|
6310 EncodeBody(dcm[2000:len(dcm)], boundary, 'DummyCT.dcm'), |
|
2cc40121c3a8
test_upload_multipart_1 and test_upload_multipart_2
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
363
diff
changeset
|
6311 headers = { |
|
2cc40121c3a8
test_upload_multipart_1 and test_upload_multipart_2
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
363
diff
changeset
|
6312 'Content-Type' : 'multipart/form-data; boundary=%s' % boundary, |
|
2cc40121c3a8
test_upload_multipart_1 and test_upload_multipart_2
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
363
diff
changeset
|
6313 'X-Requested-With' : 'XMLHttpRequest', |
|
2cc40121c3a8
test_upload_multipart_1 and test_upload_multipart_2
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
363
diff
changeset
|
6314 'X-File-Name' : 'DummyCT.dcm', |
|
2cc40121c3a8
test_upload_multipart_1 and test_upload_multipart_2
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
363
diff
changeset
|
6315 'X-File-Size' : str(len(dcm)), |
|
2cc40121c3a8
test_upload_multipart_1 and test_upload_multipart_2
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
363
diff
changeset
|
6316 }) |
|
2cc40121c3a8
test_upload_multipart_1 and test_upload_multipart_2
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
363
diff
changeset
|
6317 |
|
2cc40121c3a8
test_upload_multipart_1 and test_upload_multipart_2
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
363
diff
changeset
|
6318 self.assertEqual(2, len(DoGet(_REMOTE, '/instances'))) |
|
377
cc79fa4945da
test_pixel_data_offset
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
374
diff
changeset
|
6319 |
|
cc79fa4945da
test_pixel_data_offset
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
374
diff
changeset
|
6320 |
|
cc79fa4945da
test_pixel_data_offset
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
374
diff
changeset
|
6321 def test_pixel_data_offset(self): |
|
cc79fa4945da
test_pixel_data_offset
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
374
diff
changeset
|
6322 # New in Orthanc 1.9.1 |
|
cc79fa4945da
test_pixel_data_offset
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
374
diff
changeset
|
6323 def Check(path, offset): |
|
cc79fa4945da
test_pixel_data_offset
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
374
diff
changeset
|
6324 i = UploadInstance(_REMOTE, path) ['ID'] |
|
cc79fa4945da
test_pixel_data_offset
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
374
diff
changeset
|
6325 metadata = DoGetRaw(_REMOTE, '/instances/%s/metadata/PixelDataOffset' % i) [1] |
|
cc79fa4945da
test_pixel_data_offset
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
374
diff
changeset
|
6326 self.assertEqual(offset, metadata) |
|
cc79fa4945da
test_pixel_data_offset
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
374
diff
changeset
|
6327 |
|
cc79fa4945da
test_pixel_data_offset
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
374
diff
changeset
|
6328 Check('ColorTestMalaterre.dcm', str(0x03a0)) |
|
cc79fa4945da
test_pixel_data_offset
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
374
diff
changeset
|
6329 Check('TransferSyntaxes/1.2.840.10008.1.2.1.dcm', str(0x037c)) |
|
cc79fa4945da
test_pixel_data_offset
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
374
diff
changeset
|
6330 Check('TransferSyntaxes/1.2.840.10008.1.2.2.dcm', str(0x03e8)) # Big endian |
|
cc79fa4945da
test_pixel_data_offset
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
374
diff
changeset
|
6331 Check('TransferSyntaxes/1.2.840.10008.1.2.4.50.dcm', str(0x04ac)) |
|
cc79fa4945da
test_pixel_data_offset
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
374
diff
changeset
|
6332 Check('TransferSyntaxes/1.2.840.10008.1.2.4.51.dcm', str(0x072c)) |
|
cc79fa4945da
test_pixel_data_offset
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
374
diff
changeset
|
6333 Check('TransferSyntaxes/1.2.840.10008.1.2.4.57.dcm', str(0x0620)) |
|
cc79fa4945da
test_pixel_data_offset
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
374
diff
changeset
|
6334 Check('TransferSyntaxes/1.2.840.10008.1.2.4.70.dcm', str(0x065a)) |
|
cc79fa4945da
test_pixel_data_offset
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
374
diff
changeset
|
6335 Check('TransferSyntaxes/1.2.840.10008.1.2.4.80.dcm', str(0x0b46)) |
|
cc79fa4945da
test_pixel_data_offset
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
374
diff
changeset
|
6336 Check('TransferSyntaxes/1.2.840.10008.1.2.4.81.dcm', str(0x073e)) |
|
cc79fa4945da
test_pixel_data_offset
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
374
diff
changeset
|
6337 Check('TransferSyntaxes/1.2.840.10008.1.2.4.90.dcm', str(0x0b66)) |
|
cc79fa4945da
test_pixel_data_offset
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
374
diff
changeset
|
6338 Check('TransferSyntaxes/1.2.840.10008.1.2.4.91.dcm', str(0x19b8)) |
|
cc79fa4945da
test_pixel_data_offset
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
374
diff
changeset
|
6339 Check('TransferSyntaxes/1.2.840.10008.1.2.5.dcm', str(0x0b0a)) |
|
cc79fa4945da
test_pixel_data_offset
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
374
diff
changeset
|
6340 Check('TransferSyntaxes/1.2.840.10008.1.2.dcm', '') # No valid DICOM preamble |