Mercurial > hg > orthanc-tests
annotate Tests/Tests.py @ 8:f8d781d1d267
test_changes, test_archive, test_media_archive
| author | Sebastien Jodogne <s.jodogne@gmail.com> |
|---|---|
| date | Wed, 17 Jun 2015 13:45:54 +0200 |
| parents | 302f06f3bba2 |
| children | 5f73008bb873 |
| rev | line source |
|---|---|
| 3 | 1 # Orthanc - A Lightweight, RESTful DICOM Store |
| 2 # Copyright (C) 2012-2015 Sebastien Jodogne, Medical Physics | |
| 3 # Department, University Hospital of Liege, Belgium | |
| 4 # | |
| 5 # This program is free software: you can redistribute it and/or | |
| 6 # modify it under the terms of the GNU General Public License as | |
| 7 # published by the Free Software Foundation, either version 3 of the | |
| 8 # License, or (at your option) any later version. | |
| 9 # | |
| 10 # This program is distributed in the hope that it will be useful, but | |
| 11 # WITHOUT ANY WARRANTY; without even the implied warranty of | |
| 12 # MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU | |
| 13 # General Public License for more details. | |
| 14 # | |
| 15 # You should have received a copy of the GNU General Public License | |
| 16 # along with this program. If not, see <http://www.gnu.org/licenses/>. | |
| 17 | |
| 18 | |
| 19 import unittest | |
| 20 | |
| 21 from Toolbox import * | |
| 22 | |
| 23 _LOCAL = None | |
| 24 _REMOTE = None | |
| 25 | |
| 26 | |
| 27 def SetOrthancParameters(local, remote): | |
| 28 global _LOCAL, _REMOTE | |
| 29 _LOCAL = local | |
| 30 _REMOTE = remote | |
| 31 | |
| 32 | |
| 33 class Orthanc(unittest.TestCase): | |
| 34 def setUp(self): | |
| 35 DropOrthanc(_LOCAL) | |
| 36 DropOrthanc(_REMOTE) | |
| 37 | |
| 38 def test_system(self): | |
| 39 self.assertTrue('Version' in DoGet(_REMOTE, '/system')) | |
| 40 self.assertEqual('0', DoGet(_REMOTE, '/statistics')['TotalDiskSize']) | |
| 41 self.assertEqual('0', DoGet(_REMOTE, '/statistics')['TotalUncompressedSize']) | |
| 42 | |
| 43 def test_upload(self): | |
| 44 u = UploadInstance(_REMOTE, 'DummyCT.dcm') | |
| 45 self.assertEqual('Success', u['Status']) | |
| 46 u = UploadInstance(_REMOTE, 'DummyCT.dcm') | |
| 47 self.assertEqual('AlreadyStored', u['Status']) | |
| 48 self.assertEqual(1, len(DoGet(_REMOTE, '/patients'))) | |
| 49 self.assertEqual(1, len(DoGet(_REMOTE, '/studies'))) | |
| 50 self.assertEqual(1, len(DoGet(_REMOTE, '/series'))) | |
| 51 self.assertEqual(1, len(DoGet(_REMOTE, '/instances'))) | |
| 52 | |
| 53 i = DoGet(_REMOTE, '/instances/%s/simplified-tags' % u['ID']) | |
| 54 self.assertEqual('20070101', i['StudyDate']) | |
| 55 | |
| 56 | |
| 5 | 57 def test_upload_2(self): |
| 3 | 58 i = UploadInstance(_REMOTE, 'DummyCT.dcm')['ID'] |
| 59 instance = DoGet(_REMOTE, '/instances/%s' % i) | |
| 60 self.assertEqual(i, instance['ID']) | |
| 61 self.assertEqual('1.2.840.113619.2.176.2025.1499492.7040.1171286242.109', | |
| 62 instance['MainDicomTags']['SOPInstanceUID']) | |
| 63 | |
| 64 series = DoGet(_REMOTE, '/series/%s' % instance['ParentSeries']) | |
| 65 self.assertEqual('1.2.840.113619.2.176.2025.1499492.7391.1171285944.394', | |
| 66 series['MainDicomTags']['SeriesInstanceUID']) | |
| 67 | |
| 68 study = DoGet(_REMOTE, '/studies/%s' % series['ParentStudy']) | |
| 69 self.assertEqual('1.2.840.113619.2.176.2025.1499492.7391.1171285944.390', | |
| 70 study['MainDicomTags']['StudyInstanceUID']) | |
| 71 | |
| 72 patient = DoGet(_REMOTE, '/patients/%s' % study['ParentPatient']) | |
| 73 self.assertEqual('ozp00SjY2xG', | |
| 74 patient['MainDicomTags']['PatientID']) | |
| 75 | |
| 76 dicom = DoGet(_REMOTE, '/instances/%s/file' % instance['ID']) | |
| 77 self.assertEqual(2472, len(dicom)) | |
| 78 self.assertEqual('3e29b869978b6db4886355a2b1132124', ComputeMD5(dicom)) | |
| 79 self.assertEqual(1, len(DoGet(_REMOTE, '/instances/%s/frames' % i))) | |
| 80 self.assertEqual('TWINOW', DoGet(_REMOTE, '/instances/%s/simplified-tags' % i)['StationName']) | |
| 81 self.assertEqual('TWINOW', DoGet(_REMOTE, '/instances/%s/tags' % i)['0008,1010']['Value']) | |
| 82 | |
| 83 | |
| 5 | 84 def test_images(self): |
| 85 i = UploadInstance(_REMOTE, 'Phenix/IM-0001-0001.dcm')['ID'] | |
| 86 self.assertEqual(1, len(DoGet(_REMOTE, '/instances/%s/frames' % i))) | |
| 3 | 87 |
| 5 | 88 im = GetImage(_REMOTE, '/instances/%s/preview' % i) |
| 89 self.assertEqual("L", im.mode) | |
| 90 self.assertEqual(512, im.size[0]) | |
| 91 self.assertEqual(358, im.size[1]) | |
| 92 | |
| 93 im = GetImage(_REMOTE, '/instances/%s/image-uint8' % i) | |
| 94 self.assertEqual("L", im.mode) | |
| 95 self.assertEqual(512, im.size[0]) | |
| 96 self.assertEqual(358, im.size[1]) | |
| 97 | |
| 98 im = GetImage(_REMOTE, '/instances/%s/image-uint16' % i) | |
| 99 self.assertEqual(512, im.size[0]) | |
| 100 self.assertEqual(358, im.size[1]) | |
| 101 | |
| 102 im = GetImage(_REMOTE, '/instances/%s/frames/0/preview' % i) | |
| 103 self.assertEqual("L", im.mode) | |
| 104 self.assertEqual(512, im.size[0]) | |
| 105 self.assertEqual(358, im.size[1]) | |
| 106 | |
| 107 im = GetImage(_REMOTE, '/instances/%s/frames/0/image-uint8' % i) | |
| 108 self.assertEqual("L", im.mode) | |
| 109 self.assertEqual(512, im.size[0]) | |
| 110 self.assertEqual(358, im.size[1]) | |
| 111 | |
| 112 im = GetImage(_REMOTE, '/instances/%s/frames/0/image-uint16' % i) | |
| 113 self.assertEqual(512, im.size[0]) | |
| 114 self.assertEqual(358, im.size[1]) | |
| 115 | |
| 6 | 116 |
| 117 def test_hierarchy(self): | |
| 118 UploadFolder(_REMOTE, 'Brainix/Epi') | |
| 119 UploadFolder(_REMOTE, 'Brainix/Flair') | |
| 120 UploadFolder(_REMOTE, 'Knee/T1') | |
| 121 UploadFolder(_REMOTE, 'Knee/T2') | |
| 122 | |
| 123 p = DoGet(_REMOTE, '/patients') | |
| 124 s = DoGet(_REMOTE, '/studies') | |
| 125 t = DoGet(_REMOTE, '/series') | |
| 126 self.assertEqual(2, len(p)) | |
| 127 self.assertEqual(2, len(s)) | |
| 128 self.assertEqual(4, len(t)) | |
| 129 self.assertEqual(94, len(DoGet(_REMOTE, '/instances'))) | |
| 130 | |
| 131 brainixPatient = '16738bc3-e47ed42a-43ce044c-a3414a45-cb069bd0' | |
| 132 brainixStudy = '27f7126f-4f66fb14-03f4081b-f9341db2-53925988' | |
| 133 brainixEpi = '2ac1316d-3e432022-62eabff2-c59f5475-9b1ac3f8' | |
| 134 brainixFlair = '1e2c125c-411b8e86-3f4fe68e-a7584dd3-c6da78f0' | |
| 135 | |
| 136 kneePatient = 'ca29faea-b6a0e17f-067743a1-8b778011-a48b2a17' | |
| 137 kneeStudy = '0a9b3153-2512774b-2d9580de-1fc3dcf6-3bd83918' | |
| 138 kneeT1 = '6de73705-c4e65c1b-9d9ea1b5-cabcd8e7-f15e4285' | |
| 139 kneeT2 = 'bbf7a453-0d34251a-03663b55-46bb31b9-ffd74c59' | |
| 140 | |
| 141 self.assertTrue(brainixPatient in p) | |
| 142 self.assertTrue(kneePatient in p) | |
| 143 self.assertTrue(brainixStudy in s) | |
| 144 self.assertTrue(kneeStudy in s) | |
| 145 self.assertTrue(brainixEpi in t) | |
| 146 self.assertTrue(brainixFlair in t) | |
| 147 self.assertTrue(kneeT1 in t) | |
| 148 self.assertTrue(kneeT2 in t) | |
| 149 | |
| 150 self.assertEqual(44, len(DoGet(_REMOTE, '/patients/%s/instances' % brainixPatient))) | |
| 151 self.assertEqual(2, len(DoGet(_REMOTE, '/patients/%s/series' % brainixPatient))) | |
| 152 self.assertEqual(1, len(DoGet(_REMOTE, '/patients/%s/studies' % brainixPatient))) | |
| 153 | |
| 154 self.assertEqual(50, len(DoGet(_REMOTE, '/patients/%s/instances' % kneePatient))) | |
| 155 self.assertEqual(2, len(DoGet(_REMOTE, '/patients/%s/series' % kneePatient))) | |
| 156 self.assertEqual(1, len(DoGet(_REMOTE, '/patients/%s/studies' % kneePatient))) | |
| 157 | |
| 158 self.assertEqual(2, len(DoGet(_REMOTE, '/studies/%s/series' % brainixStudy))) | |
| 159 self.assertEqual(44, len(DoGet(_REMOTE, '/studies/%s/instances' % brainixStudy))) | |
| 160 | |
| 161 self.assertEqual(2, len(DoGet(_REMOTE, '/studies/%s/series' % kneeStudy))) | |
| 162 self.assertEqual(50, len(DoGet(_REMOTE, '/studies/%s/instances' % kneeStudy))) | |
| 163 | |
| 164 self.assertEqual(22, len(DoGet(_REMOTE, '/series/%s/instances' % brainixEpi))) | |
| 165 self.assertEqual(22, len(DoGet(_REMOTE, '/series/%s/instances' % brainixFlair))) | |
| 166 self.assertEqual(24, len(DoGet(_REMOTE, '/series/%s/instances' % kneeT1))) | |
| 167 self.assertEqual(26, len(DoGet(_REMOTE, '/series/%s/instances' % kneeT2))) | |
| 168 | |
| 169 for patient in p: | |
| 170 for study in DoGet(_REMOTE, '/patients/%s/studies' % patient): | |
| 171 self.assertEqual(patient, study['ParentPatient']) | |
| 172 for series in DoGet(_REMOTE, '/studies/%s/series' % study['ID']): | |
| 173 self.assertEqual(study['ID'], series['ParentStudy']) | |
| 174 for instance in DoGet(_REMOTE, '/series/%s/instances' % series['ID']): | |
| 175 self.assertEqual(series['ID'], instance['ParentSeries']) | |
| 176 | |
| 177 self.assertEqual(json.dumps(DoGet(_REMOTE, '/instances/%s/attachments/dicom-as-json/data' % instance['ID'])), | |
| 178 json.dumps(DoGet(_REMOTE, '/instances/%s/tags' % instance['ID']))) | |
| 179 | |
| 180 | |
| 181 r = DoDelete(_REMOTE, "/studies/%s" % brainixStudy)['RemainingAncestor'] | |
| 182 self.assertEqual(1, len(DoGet(_REMOTE, '/patients'))) | |
| 183 self.assertEqual(1, len(DoGet(_REMOTE, '/studies'))) | |
| 184 self.assertEqual(2, len(DoGet(_REMOTE, '/series'))) | |
| 185 self.assertEqual(50, len(DoGet(_REMOTE, '/instances'))) | |
| 186 self.assertEqual(None, r) | |
| 187 | |
| 188 r = DoDelete(_REMOTE, "/series/%s" % kneeT2)['RemainingAncestor'] | |
| 189 self.assertEqual(1, len(DoGet(_REMOTE, '/patients'))) | |
| 190 self.assertEqual(1, len(DoGet(_REMOTE, '/studies'))) | |
| 191 self.assertEqual(1, len(DoGet(_REMOTE, '/series'))) | |
| 192 self.assertEqual(24, len(DoGet(_REMOTE, '/instances'))) | |
| 193 self.assertEqual('Study', r['Type']) | |
| 194 self.assertEqual(kneeStudy, r['ID']) | |
| 195 | |
| 196 r = DoDelete(_REMOTE, "/instances/%s" % DoGet(_REMOTE, '/instances')[0])['RemainingAncestor'] | |
| 197 self.assertEqual(1, len(DoGet(_REMOTE, '/patients'))) | |
| 198 self.assertEqual(1, len(DoGet(_REMOTE, '/studies'))) | |
| 199 self.assertEqual(1, len(DoGet(_REMOTE, '/series'))) | |
| 200 self.assertEqual(23, len(DoGet(_REMOTE, '/instances'))) | |
| 201 self.assertEqual('Series', r['Type']) | |
| 202 self.assertEqual(kneeT1, r['ID']) | |
| 203 | |
| 204 r = DoDelete(_REMOTE, "/patients/%s" % kneePatient)['RemainingAncestor'] | |
| 205 self.assertEqual(0, len(DoGet(_REMOTE, '/patients'))) | |
| 206 self.assertEqual(0, len(DoGet(_REMOTE, '/studies'))) | |
| 207 self.assertEqual(0, len(DoGet(_REMOTE, '/series'))) | |
| 208 self.assertEqual(0, len(DoGet(_REMOTE, '/instances'))) | |
| 209 self.assertEqual(None, r) | |
| 210 | |
| 211 DropOrthanc(_REMOTE) | |
| 212 self.assertEqual('0', DoGet(_REMOTE, '/statistics')['TotalDiskSize']) | |
| 213 self.assertEqual('0', DoGet(_REMOTE, '/statistics')['TotalUncompressedSize']) | |
| 7 | 214 |
| 215 | |
| 216 def test_multi_frame(self): | |
| 217 i = UploadInstance(_REMOTE, 'Multiframe.dcm')['ID'] | |
| 218 self.assertEqual(76, len(DoGet(_REMOTE, '/instances/%s/frames' % i))) | |
| 219 | |
| 220 im = GetImage(_REMOTE, '/instances/%s/frames/0/preview' % i) | |
| 221 self.assertEqual("L", im.mode) | |
| 222 self.assertEqual(512, im.size[0]) | |
| 223 self.assertEqual(512, im.size[1]) | |
| 224 | |
| 225 DoGet(_REMOTE, '/instances/%s/frames/0/image-uint8' % i) | |
| 226 DoGet(_REMOTE, '/instances/%s/frames/0/image-uint16' % i) | |
| 227 DoGet(_REMOTE, '/instances/%s/frames/75/preview' % i) | |
| 228 self.assertRaises(Exception, lambda: DoGet(_REMOTE, '/instances/%s/frames/aaa/preview' % i)) | |
| 229 self.assertRaises(Exception, lambda: DoGet(_REMOTE, '/instances/%s/frames/76/preview' % i)) | |
| 230 | |
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231 |
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232 def test_changes(self): |
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233 # Check emptiness |
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234 c = DoGet(_REMOTE, '/changes') |
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235 self.assertEqual(0, len(c['Changes'])) |
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236 self.assertEqual(0, c['Last']) |
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237 self.assertTrue(c['Done']) |
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238 c = DoGet(_REMOTE, '/changes?last') |
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239 self.assertEqual(0, len(c['Changes'])) |
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240 self.assertEqual(0, c['Last']) |
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241 self.assertTrue(c['Done']) |
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242 |
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243 # Add 1 instance |
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244 i = UploadInstance(_REMOTE, 'Brainix/Flair/IM-0001-0001.dcm')['ID'] |
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245 c = DoGet(_REMOTE, '/changes') |
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246 begin = c['Last'] |
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247 self.assertEqual(4, len(c['Changes'])) |
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248 self.assertTrue(c['Done']) |
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249 self.assertEqual(c['Changes'][-1]['Seq'], c['Last']) |
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250 |
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251 c = DoGet(_REMOTE, '/changes?last') |
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252 self.assertEqual(1, len(c['Changes'])) |
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253 self.assertEqual(begin, c['Last']) |
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254 self.assertTrue(c['Done']) |
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255 c = DoGet(_REMOTE, '/changes?limit=1&since=' + str(begin - 1)) |
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256 self.assertEqual(1, len(c['Changes'])) |
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257 self.assertEqual(begin, c['Last']) |
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258 self.assertTrue(c['Done']) |
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259 c = DoGet(_REMOTE, '/changes?limit=1&since=' + str(begin - 2)) |
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260 self.assertEqual(1, len(c['Changes'])) |
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261 self.assertEqual(begin - 1, c['Last']) |
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262 self.assertFalse(c['Done']) |
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263 c = DoGet(_REMOTE, '/changes?limit=1&since=' + str(begin - 3)) |
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264 self.assertEqual(1, len(c['Changes'])) |
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265 self.assertEqual(begin - 2, c['Last']) |
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266 self.assertFalse(c['Done']) |
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267 |
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268 UploadFolder(_REMOTE, 'Knee/T1') |
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269 UploadFolder(_REMOTE, 'Knee/T2') |
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270 since = begin |
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271 countPatients = 0 |
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272 countStudies = 0 |
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273 countSeries = 0 |
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274 countInstances = 0 |
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275 completed = 0 |
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276 while True: |
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277 c = DoGet(_REMOTE, '/changes', { 'since' : since, 'limit' : 3 }) |
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278 since = c['Last'] |
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279 for i in c['Changes']: |
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280 if i['ResourceType'] == 'Instance': |
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281 countInstances += 1 |
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282 if i['ResourceType'] == 'Patient': |
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283 countPatients += 1 |
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284 if i['ResourceType'] == 'Study': |
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285 countStudies += 1 |
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286 if i['ResourceType'] == 'Series': |
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287 countSeries += 1 |
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288 if i['ChangeType'] == 'NewInstance': |
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289 countInstances += 1 |
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290 if i['ChangeType'] == 'NewPatient': |
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291 countPatients += 1 |
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292 if i['ChangeType'] == 'NewStudy': |
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293 countStudies += 1 |
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294 if i['ChangeType'] == 'NewSeries': |
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295 countSeries += 1 |
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296 if i['ChangeType'] == 'CompletedSeries': |
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297 completed += 1 |
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298 self.assertTrue('ID' in i) |
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299 self.assertTrue('Path' in i) |
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300 self.assertTrue('Seq' in i) |
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301 if c['Done']: |
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302 break |
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303 |
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304 self.assertEqual(2 * 50, countInstances) |
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305 self.assertEqual(2 * 1, countPatients) |
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306 self.assertEqual(2 * 1, countStudies) |
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307 self.assertEqual(2 * 2, countSeries) |
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308 self.assertEqual(0, completed) |
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309 |
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310 |
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311 def test_archive(self): |
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312 UploadInstance(_REMOTE, 'Knee/T1/IM-0001-0001.dcm') |
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313 UploadInstance(_REMOTE, 'Knee/T2/IM-0001-0001.dcm') |
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314 |
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315 z = GetArchive(_REMOTE, '/patients/%s/archive' % DoGet(_REMOTE, '/patients')[0]) |
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316 self.assertEqual(2, len(z.namelist())) |
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317 |
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318 z = GetArchive(_REMOTE, '/studies/%s/archive' % DoGet(_REMOTE, '/studies')[0]) |
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319 self.assertEqual(2, len(z.namelist())) |
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320 |
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321 z = GetArchive(_REMOTE, '/series/%s/archive' % DoGet(_REMOTE, '/series')[0]) |
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322 self.assertEqual(1, len(z.namelist())) |
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323 |
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324 UploadInstance(_REMOTE, 'Brainix/Flair/IM-0001-0001.dcm') |
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325 |
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326 z = GetArchive(_REMOTE, '/patients/%s/archive' % DoGet(_REMOTE, '/patients')[0]) |
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327 self.assertEqual(2, len(z.namelist())) |
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328 |
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329 |
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330 def test_media_archive(self): |
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331 UploadInstance(_REMOTE, 'Knee/T1/IM-0001-0001.dcm') |
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332 UploadInstance(_REMOTE, 'Knee/T2/IM-0001-0001.dcm') |
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333 |
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334 z = GetArchive(_REMOTE, '/patients/%s/media' % DoGet(_REMOTE, '/patients')[0]) |
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335 self.assertEqual(3, len(z.namelist())) |
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336 self.assertTrue('IMAGES/IM0' in z.namelist()) |
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337 self.assertTrue('IMAGES/IM1' in z.namelist()) |
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338 self.assertTrue('DICOMDIR' in z.namelist()) |
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339 |
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340 try: |
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341 os.remove('/tmp/DICOMDIR') |
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342 except: |
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343 # The file does not exist |
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344 pass |
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345 |
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346 z.extract('DICOMDIR', '/tmp') |
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347 a = subprocess.check_output([ 'dciodvfy', '/tmp/DICOMDIR' ], |
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348 stderr = subprocess.STDOUT).split('\n') |
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349 self.assertEqual(3, len(a)) |
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350 self.assertTrue(a[0].startswith('Warning')) |
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351 self.assertEqual('BasicDirectory', a[1]) |
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352 self.assertEqual('', a[2]) |
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353 |
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354 a = subprocess.check_output([ 'dcentvfy', '/tmp/DICOMDIR' ], |
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355 stderr = subprocess.STDOUT).split('\n') |
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356 self.assertEqual(1, len(a)) |
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357 self.assertEqual('', a[0]) |
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358 |
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359 a = subprocess.check_output([ 'dcm2xml', '/tmp/DICOMDIR' ]) |
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360 self.assertTrue(re.search('1.3.46.670589.11.17521.5.0.3124.2008081908590448738', a) != None) |
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361 self.assertTrue(re.search('1.3.46.670589.11.17521.5.0.3124.2008081909113806560', a) != None) |
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362 |
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363 os.remove('/tmp/DICOMDIR') |