Mercurial > hg > orthanc-tests
annotate Tests/Tests.py @ 374:78bef07c4118
fix
author | Sebastien Jodogne <s.jodogne@gmail.com> |
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date | Tue, 26 Jan 2021 15:26:45 +0100 |
parents | f673153f27a4 |
children | cc79fa4945da |
rev | line source |
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22 | 1 #!/usr/bin/env python |
2 # -*- coding: utf-8 -*- | |
3 | |
4 | |
3 | 5 # Orthanc - A Lightweight, RESTful DICOM Store |
73 | 6 # Copyright (C) 2012-2016 Sebastien Jodogne, Medical Physics |
3 | 7 # Department, University Hospital of Liege, Belgium |
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8 # Copyright (C) 2017-2021 Osimis S.A., Belgium |
3 | 9 # |
10 # This program is free software: you can redistribute it and/or | |
11 # modify it under the terms of the GNU General Public License as | |
12 # published by the Free Software Foundation, either version 3 of the | |
13 # License, or (at your option) any later version. | |
14 # | |
15 # This program is distributed in the hope that it will be useful, but | |
16 # WITHOUT ANY WARRANTY; without even the implied warranty of | |
17 # MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU | |
18 # General Public License for more details. | |
19 # | |
20 # You should have received a copy of the GNU General Public License | |
21 # along with this program. If not, see <http://www.gnu.org/licenses/>. | |
22 | |
23 | |
202
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24 import base64 |
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25 import bz2 |
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26 import copy |
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27 import pprint |
14 | 28 import tempfile |
3 | 29 import unittest |
295 | 30 import shutil |
3 | 31 |
11 | 32 from PIL import ImageChops |
3 | 33 from Toolbox import * |
13 | 34 from xml.dom import minidom |
312 | 35 from datetime import datetime |
3 | 36 |
37 _LOCAL = None | |
38 _REMOTE = None | |
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39 _DOCKER = False |
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40 |
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41 |
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42 def SetOrthancParameters(local, remote, withinDocker): |
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43 global _LOCAL, _REMOTE, _DOCKER |
3 | 44 _LOCAL = local |
45 _REMOTE = remote | |
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46 _DOCKER = withinDocker |
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47 |
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48 |
14 | 49 def ExtractDicomTags(rawDicom, tags): |
50 with tempfile.NamedTemporaryFile(delete = True) as f: | |
51 f.write(rawDicom) | |
52 f.flush() | |
45 | 53 data = subprocess.check_output([ FindExecutable('dcm2xml'), f.name ]) |
14 | 54 |
55 result = [] | |
56 for tag in tags: | |
57 match = re.search('<element[^>]+name="%s">([^>]*)</element>' % tag, data) | |
58 if match == None: | |
59 result.append('') | |
60 else: | |
61 result.append(match.group(1)) | |
62 | |
63 return result | |
64 | |
65 | |
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66 def CompareLists(a, b): |
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67 if len(a) != len(b): |
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68 return False |
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69 |
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70 for i in range(len(a)): |
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71 d = a[i] - b[i] |
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72 if abs(d) >= 0.51: # Add some tolerance for rounding errors |
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73 return False |
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74 |
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75 return True |
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76 |
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77 |
80
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78 def CompareTags(a, b, tagsToIgnore): |
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79 for i in tagsToIgnore: |
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80 if i in a: |
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81 del a[i] |
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82 if i in b: |
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83 del b[i] |
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84 |
123 | 85 if a.keys() == b.keys(): |
86 return True | |
87 else: | |
88 print('Mismatch in tags: %s' % str(set(a.keys()) ^ set(b.keys()))) | |
89 return False | |
80
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90 |
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91 |
71
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92 def CallFindScu(args): |
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93 p = subprocess.Popen([ FindExecutable('findscu'), |
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94 '-P', '-aec', _REMOTE['DicomAet'], '-aet', _LOCAL['DicomAet'], |
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95 _REMOTE['Server'], str(_REMOTE['DicomPort']) ] + args, |
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96 stderr=subprocess.PIPE) |
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97 return p.communicate()[1] |
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98 |
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99 |
142 | 100 def GetMoveScuCommand(): |
101 return [ | |
102 FindExecutable('movescu'), | |
103 '--move', _LOCAL['DicomAet'], # Target AET (i.e. storescp) | |
104 '--call', _REMOTE['DicomAet'], # Called AET (i.e. Orthanc) | |
105 '--aetitle', _LOCAL['DicomAet'], # Calling AET (i.e. storescp) | |
106 _REMOTE['Server'], | |
107 str(_REMOTE['DicomPort']) | |
108 ] | |
109 | |
231
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110 |
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111 def CallMoveScu(args): |
231
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112 try: |
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113 subprocess.check_call(GetMoveScuCommand() + args, |
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114 stderr = subprocess.PIPE) |
231
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115 except subprocess.CalledProcessError as e: |
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116 # The error code "69" corresponds to "EXITCODE_CMOVE_ERROR", |
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117 # that has been introduced in DCMTK 3.6.2. This error code is |
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118 # expected by some tests that try and C-MOVE non-existing |
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119 # DICOM instances. |
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120 # https://groups.google.com/d/msg/orthanc-users/DCRc5NeSCbM/DG-pSWj-BwAJ |
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121 if e.returncode != 69: |
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122 raise e |
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123 |
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124 |
51
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125 def GenerateTestSequence(): |
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126 return [ |
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127 { |
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128 'StudyDescription': 'Hello^', |
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129 'ReferencedStudySequence' : [ |
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130 { |
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131 'StudyDescription': 'Toto', |
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132 }, |
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133 { |
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134 'StudyDescription': 'Tata', |
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135 }, |
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136 ] |
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137 }, |
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138 { |
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139 'StudyDescription': 'Sébastien^', |
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140 'StudyDate' : '19700202', |
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141 } |
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142 ] |
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143 |
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144 |
3 | 145 class Orthanc(unittest.TestCase): |
146 def setUp(self): | |
83 | 147 if (sys.version_info >= (3, 0)): |
148 # Remove annoying warnings about unclosed socket in Python 3 | |
149 import warnings | |
150 warnings.simplefilter("ignore", ResourceWarning) | |
151 | |
3 | 152 DropOrthanc(_LOCAL) |
153 DropOrthanc(_REMOTE) | |
174 | 154 UninstallLuaCallbacks(_REMOTE) |
312 | 155 #print("%s: In test %s" % (datetime.now(), self._testMethodName)) |
44
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156 |
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157 def AssertSameImages(self, truth, url): |
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158 im = GetImage(_REMOTE, url) |
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159 self.assertTrue(CompareLists(truth, im.getdata())) |
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160 |
3 | 161 |
162 def test_system(self): | |
177 | 163 self.assertTrue('Version' in DoGet(_REMOTE, '/system')) |
164 self.assertEqual('0', DoGet(_REMOTE, '/statistics')['TotalDiskSize']) | |
165 self.assertEqual('0', DoGet(_REMOTE, '/statistics')['TotalUncompressedSize']) | |
166 | |
167 systemInfo = DoGet(_REMOTE, '/system') | |
168 if systemInfo["Version"] == "mainline": | |
169 print "Skipping version checks since you're currently in mainline" | |
170 return | |
171 | |
173 | 172 self.assertTrue(IsOrthancVersionAbove(_LOCAL, 0, 8, 6)) |
173 self.assertFalse(IsOrthancVersionAbove(_LOCAL, 0, 8, 7)) | |
174 self.assertTrue(IsOrthancVersionAbove(_LOCAL, 0, 7, 6)) | |
175 self.assertFalse(IsOrthancVersionAbove(_LOCAL, 0, 9, 6)) | |
176 self.assertFalse(IsOrthancVersionAbove(_LOCAL, 1, 8, 6)) | |
3 | 177 |
178 def test_upload(self): | |
173 | 179 self.assertEqual('0', DoGet(_REMOTE, '/statistics')['TotalDiskSize']) |
180 self.assertEqual('0', DoGet(_REMOTE, '/statistics')['TotalUncompressedSize']) | |
181 | |
182 sizeDummyCT = 2472 | |
183 sizeOverwrite = 2476 | |
184 instance = '66a662ce-7430e543-bad44d47-0dc5a943-ec7a538d' | |
185 | |
3 | 186 u = UploadInstance(_REMOTE, 'DummyCT.dcm') |
183 | 187 self.assertEqual(instance, u['ID']) |
3 | 188 self.assertEqual('Success', u['Status']) |
173 | 189 |
183 | 190 if True: |
191 # New test for Orthanc 1.4.3 | |
192 self.assertEqual('f2635388-f01d497a-15f7c06b-ad7dba06-c4c599fe', u['ParentSeries']) | |
193 self.assertEqual('b9c08539-26f93bde-c81ab0d7-bffaf2cb-a4d0bdd0', u['ParentStudy']) | |
194 self.assertEqual('6816cb19-844d5aee-85245eba-28e841e6-2414fae2', u['ParentPatient']) | |
195 | |
173 | 196 j = int(DoGet(_REMOTE, '/instances/%s/attachments/dicom-as-json/size' % instance)) |
197 s = sizeDummyCT + j | |
198 self.assertEqual('%d' % s, DoGet(_REMOTE, '/statistics')['TotalDiskSize']) | |
199 self.assertEqual('%d' % s, DoGet(_REMOTE, '/statistics')['TotalUncompressedSize']) | |
200 | |
3 | 201 u = UploadInstance(_REMOTE, 'DummyCT.dcm') |
202 self.assertEqual(1, len(DoGet(_REMOTE, '/patients'))) | |
203 self.assertEqual(1, len(DoGet(_REMOTE, '/studies'))) | |
204 self.assertEqual(1, len(DoGet(_REMOTE, '/series'))) | |
205 self.assertEqual(1, len(DoGet(_REMOTE, '/instances'))) | |
173 | 206 self.assertEqual('%d' % s, DoGet(_REMOTE, '/statistics')['TotalDiskSize']) |
207 self.assertEqual('%d' % s, DoGet(_REMOTE, '/statistics')['TotalUncompressedSize']) | |
208 | |
209 i = DoGet(_REMOTE, '/instances/%s/simplified-tags' % instance) | |
3 | 210 self.assertEqual('20070101', i['StudyDate']) |
173 | 211 self.assertEqual('KNIX', i['PatientName']) |
212 | |
213 if IsOrthancVersionAbove(_REMOTE, 1, 4, 2): | |
214 # Overwriting | |
215 self.assertEqual('Success', u['Status']) | |
216 else: | |
217 self.assertEqual('AlreadyStored', u['Status']) | |
218 | |
219 u = UploadInstance(_REMOTE, 'DummyCT-overwrite.dcm') | |
220 self.assertEqual(1, len(DoGet(_REMOTE, '/patients'))) | |
221 self.assertEqual(1, len(DoGet(_REMOTE, '/studies'))) | |
222 self.assertEqual(1, len(DoGet(_REMOTE, '/series'))) | |
223 self.assertEqual(1, len(DoGet(_REMOTE, '/instances'))) | |
224 | |
225 if IsOrthancVersionAbove(_REMOTE, 1, 4, 2): | |
226 # Overwriting | |
227 self.assertEqual('Success', u['Status']) | |
228 j2 = int(DoGet(_REMOTE, '/instances/%s/attachments/dicom-as-json/size' % instance)) | |
229 s2 = sizeOverwrite + j2 | |
230 self.assertNotEqual(s, s2) | |
231 self.assertNotEqual(j, j2) | |
232 self.assertEqual('%d' % s2, DoGet(_REMOTE, '/statistics')['TotalDiskSize']) | |
233 self.assertEqual('%d' % s2, DoGet(_REMOTE, '/statistics')['TotalUncompressedSize']) | |
234 i = DoGet(_REMOTE, '/instances/%s/simplified-tags' % instance) | |
235 self.assertEqual('ANOTHER', i['PatientName']) | |
236 else: | |
237 self.assertEqual('AlreadyStored', u['Status']) | |
238 self.assertEqual('%d' % s, DoGet(_REMOTE, '/statistics')['TotalDiskSize']) | |
239 self.assertEqual('%d' % s, DoGet(_REMOTE, '/statistics')['TotalUncompressedSize']) | |
3 | 240 |
5 | 241 def test_upload_2(self): |
3 | 242 i = UploadInstance(_REMOTE, 'DummyCT.dcm')['ID'] |
243 instance = DoGet(_REMOTE, '/instances/%s' % i) | |
244 self.assertEqual(i, instance['ID']) | |
245 self.assertEqual('1.2.840.113619.2.176.2025.1499492.7040.1171286242.109', | |
246 instance['MainDicomTags']['SOPInstanceUID']) | |
247 | |
248 series = DoGet(_REMOTE, '/series/%s' % instance['ParentSeries']) | |
249 self.assertEqual('1.2.840.113619.2.176.2025.1499492.7391.1171285944.394', | |
250 series['MainDicomTags']['SeriesInstanceUID']) | |
251 | |
252 study = DoGet(_REMOTE, '/studies/%s' % series['ParentStudy']) | |
253 self.assertEqual('1.2.840.113619.2.176.2025.1499492.7391.1171285944.390', | |
254 study['MainDicomTags']['StudyInstanceUID']) | |
255 | |
256 patient = DoGet(_REMOTE, '/patients/%s' % study['ParentPatient']) | |
257 self.assertEqual('ozp00SjY2xG', | |
258 patient['MainDicomTags']['PatientID']) | |
259 | |
260 dicom = DoGet(_REMOTE, '/instances/%s/file' % instance['ID']) | |
261 self.assertEqual(2472, len(dicom)) | |
262 self.assertEqual('3e29b869978b6db4886355a2b1132124', ComputeMD5(dicom)) | |
263 self.assertEqual(1, len(DoGet(_REMOTE, '/instances/%s/frames' % i))) | |
264 self.assertEqual('TWINOW', DoGet(_REMOTE, '/instances/%s/simplified-tags' % i)['StationName']) | |
265 self.assertEqual('TWINOW', DoGet(_REMOTE, '/instances/%s/tags' % i)['0008,1010']['Value']) | |
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266 self.assertEqual('TWINOW', DoGet(_REMOTE, '/instances/%s/tags?simplify' % i)['StationName']) |
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267 self.assertEqual('TWINOW', DoGet(_REMOTE, '/instances/%s/tags?short' % i)['0008,1010']) |
3 | 268 |
269 | |
5 | 270 def test_images(self): |
271 i = UploadInstance(_REMOTE, 'Phenix/IM-0001-0001.dcm')['ID'] | |
272 self.assertEqual(1, len(DoGet(_REMOTE, '/instances/%s/frames' % i))) | |
3 | 273 |
5 | 274 im = GetImage(_REMOTE, '/instances/%s/preview' % i) |
275 self.assertEqual("L", im.mode) | |
276 self.assertEqual(512, im.size[0]) | |
277 self.assertEqual(358, im.size[1]) | |
278 | |
279 im = GetImage(_REMOTE, '/instances/%s/image-uint8' % i) | |
280 self.assertEqual("L", im.mode) | |
281 self.assertEqual(512, im.size[0]) | |
282 self.assertEqual(358, im.size[1]) | |
283 | |
284 im = GetImage(_REMOTE, '/instances/%s/image-uint16' % i) | |
285 self.assertEqual(512, im.size[0]) | |
286 self.assertEqual(358, im.size[1]) | |
287 | |
288 im = GetImage(_REMOTE, '/instances/%s/frames/0/preview' % i) | |
289 self.assertEqual("L", im.mode) | |
290 self.assertEqual(512, im.size[0]) | |
291 self.assertEqual(358, im.size[1]) | |
292 | |
293 im = GetImage(_REMOTE, '/instances/%s/frames/0/image-uint8' % i) | |
294 self.assertEqual("L", im.mode) | |
295 self.assertEqual(512, im.size[0]) | |
296 self.assertEqual(358, im.size[1]) | |
297 | |
298 im = GetImage(_REMOTE, '/instances/%s/frames/0/image-uint16' % i) | |
299 self.assertEqual(512, im.size[0]) | |
300 self.assertEqual(358, im.size[1]) | |
64 | 301 |
302 # This is Little Endian Explicit | |
303 self.assertEqual('1.2.840.10008.1.2.1', DoGet(_REMOTE, '/instances/%s/header?simplify' % i)['TransferSyntaxUID']) | |
304 | |
6 | 305 |
306 def test_hierarchy(self): | |
307 UploadFolder(_REMOTE, 'Brainix/Epi') | |
308 UploadFolder(_REMOTE, 'Brainix/Flair') | |
309 UploadFolder(_REMOTE, 'Knee/T1') | |
310 UploadFolder(_REMOTE, 'Knee/T2') | |
311 | |
312 p = DoGet(_REMOTE, '/patients') | |
313 s = DoGet(_REMOTE, '/studies') | |
314 t = DoGet(_REMOTE, '/series') | |
315 self.assertEqual(2, len(p)) | |
316 self.assertEqual(2, len(s)) | |
317 self.assertEqual(4, len(t)) | |
318 self.assertEqual(94, len(DoGet(_REMOTE, '/instances'))) | |
319 | |
320 brainixPatient = '16738bc3-e47ed42a-43ce044c-a3414a45-cb069bd0' | |
321 brainixStudy = '27f7126f-4f66fb14-03f4081b-f9341db2-53925988' | |
322 brainixEpi = '2ac1316d-3e432022-62eabff2-c59f5475-9b1ac3f8' | |
323 brainixFlair = '1e2c125c-411b8e86-3f4fe68e-a7584dd3-c6da78f0' | |
324 | |
325 kneePatient = 'ca29faea-b6a0e17f-067743a1-8b778011-a48b2a17' | |
326 kneeStudy = '0a9b3153-2512774b-2d9580de-1fc3dcf6-3bd83918' | |
327 kneeT1 = '6de73705-c4e65c1b-9d9ea1b5-cabcd8e7-f15e4285' | |
328 kneeT2 = 'bbf7a453-0d34251a-03663b55-46bb31b9-ffd74c59' | |
329 | |
330 self.assertTrue(brainixPatient in p) | |
331 self.assertTrue(kneePatient in p) | |
332 self.assertTrue(brainixStudy in s) | |
333 self.assertTrue(kneeStudy in s) | |
334 self.assertTrue(brainixEpi in t) | |
335 self.assertTrue(brainixFlair in t) | |
336 self.assertTrue(kneeT1 in t) | |
337 self.assertTrue(kneeT2 in t) | |
338 | |
339 self.assertEqual(44, len(DoGet(_REMOTE, '/patients/%s/instances' % brainixPatient))) | |
340 self.assertEqual(2, len(DoGet(_REMOTE, '/patients/%s/series' % brainixPatient))) | |
341 self.assertEqual(1, len(DoGet(_REMOTE, '/patients/%s/studies' % brainixPatient))) | |
342 | |
343 self.assertEqual(50, len(DoGet(_REMOTE, '/patients/%s/instances' % kneePatient))) | |
344 self.assertEqual(2, len(DoGet(_REMOTE, '/patients/%s/series' % kneePatient))) | |
345 self.assertEqual(1, len(DoGet(_REMOTE, '/patients/%s/studies' % kneePatient))) | |
346 | |
347 self.assertEqual(2, len(DoGet(_REMOTE, '/studies/%s/series' % brainixStudy))) | |
348 self.assertEqual(44, len(DoGet(_REMOTE, '/studies/%s/instances' % brainixStudy))) | |
349 | |
350 self.assertEqual(2, len(DoGet(_REMOTE, '/studies/%s/series' % kneeStudy))) | |
351 self.assertEqual(50, len(DoGet(_REMOTE, '/studies/%s/instances' % kneeStudy))) | |
352 | |
353 self.assertEqual(22, len(DoGet(_REMOTE, '/series/%s/instances' % brainixEpi))) | |
354 self.assertEqual(22, len(DoGet(_REMOTE, '/series/%s/instances' % brainixFlair))) | |
355 self.assertEqual(24, len(DoGet(_REMOTE, '/series/%s/instances' % kneeT1))) | |
356 self.assertEqual(26, len(DoGet(_REMOTE, '/series/%s/instances' % kneeT2))) | |
357 | |
358 for patient in p: | |
359 for study in DoGet(_REMOTE, '/patients/%s/studies' % patient): | |
360 self.assertEqual(patient, study['ParentPatient']) | |
361 for series in DoGet(_REMOTE, '/studies/%s/series' % study['ID']): | |
362 self.assertEqual(study['ID'], series['ParentStudy']) | |
211 | 363 self.assertEqual('Unknown', series['Status']) |
6 | 364 for instance in DoGet(_REMOTE, '/series/%s/instances' % series['ID']): |
365 self.assertEqual(series['ID'], instance['ParentSeries']) | |
366 | |
367 self.assertEqual(json.dumps(DoGet(_REMOTE, '/instances/%s/attachments/dicom-as-json/data' % instance['ID'])), | |
368 json.dumps(DoGet(_REMOTE, '/instances/%s/tags' % instance['ID']))) | |
369 | |
370 | |
371 r = DoDelete(_REMOTE, "/studies/%s" % brainixStudy)['RemainingAncestor'] | |
372 self.assertEqual(1, len(DoGet(_REMOTE, '/patients'))) | |
373 self.assertEqual(1, len(DoGet(_REMOTE, '/studies'))) | |
374 self.assertEqual(2, len(DoGet(_REMOTE, '/series'))) | |
375 self.assertEqual(50, len(DoGet(_REMOTE, '/instances'))) | |
376 self.assertEqual(None, r) | |
377 | |
378 r = DoDelete(_REMOTE, "/series/%s" % kneeT2)['RemainingAncestor'] | |
379 self.assertEqual(1, len(DoGet(_REMOTE, '/patients'))) | |
380 self.assertEqual(1, len(DoGet(_REMOTE, '/studies'))) | |
381 self.assertEqual(1, len(DoGet(_REMOTE, '/series'))) | |
382 self.assertEqual(24, len(DoGet(_REMOTE, '/instances'))) | |
383 self.assertEqual('Study', r['Type']) | |
384 self.assertEqual(kneeStudy, r['ID']) | |
385 | |
386 r = DoDelete(_REMOTE, "/instances/%s" % DoGet(_REMOTE, '/instances')[0])['RemainingAncestor'] | |
387 self.assertEqual(1, len(DoGet(_REMOTE, '/patients'))) | |
388 self.assertEqual(1, len(DoGet(_REMOTE, '/studies'))) | |
389 self.assertEqual(1, len(DoGet(_REMOTE, '/series'))) | |
390 self.assertEqual(23, len(DoGet(_REMOTE, '/instances'))) | |
391 self.assertEqual('Series', r['Type']) | |
392 self.assertEqual(kneeT1, r['ID']) | |
393 | |
394 r = DoDelete(_REMOTE, "/patients/%s" % kneePatient)['RemainingAncestor'] | |
395 self.assertEqual(0, len(DoGet(_REMOTE, '/patients'))) | |
396 self.assertEqual(0, len(DoGet(_REMOTE, '/studies'))) | |
397 self.assertEqual(0, len(DoGet(_REMOTE, '/series'))) | |
398 self.assertEqual(0, len(DoGet(_REMOTE, '/instances'))) | |
399 self.assertEqual(None, r) | |
400 | |
401 DropOrthanc(_REMOTE) | |
402 self.assertEqual('0', DoGet(_REMOTE, '/statistics')['TotalDiskSize']) | |
403 self.assertEqual('0', DoGet(_REMOTE, '/statistics')['TotalUncompressedSize']) | |
7 | 404 |
213
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405 def test_delete_cascade(self): |
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406 # make sure deleting the last instance of a study deletes the series, study and patient |
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407 |
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408 self.assertEqual(0, len(DoGet(_REMOTE, '/instances'))) # make sure orthanc is empty when starting the test |
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409 a = UploadInstance(_REMOTE, 'DummyCT.dcm')['ID'] |
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410 self.assertEqual(1, len(DoGet(_REMOTE, '/instances'))) |
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411 self.assertEqual(1, len(DoGet(_REMOTE, '/series'))) |
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412 self.assertEqual(1, len(DoGet(_REMOTE, '/studies'))) |
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413 self.assertEqual(1, len(DoGet(_REMOTE, '/patients'))) |
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414 |
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415 DoDelete(_REMOTE, '/instances/%s' % a) |
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416 |
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417 self.assertEqual(0, len(DoGet(_REMOTE, '/instances'))) |
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418 self.assertEqual(0, len(DoGet(_REMOTE, '/series'))) |
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419 self.assertEqual(0, len(DoGet(_REMOTE, '/studies'))) |
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420 self.assertEqual(0, len(DoGet(_REMOTE, '/patients'))) |
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421 |
7 | 422 |
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423 def test_multiframe(self): |
7 | 424 i = UploadInstance(_REMOTE, 'Multiframe.dcm')['ID'] |
425 self.assertEqual(76, len(DoGet(_REMOTE, '/instances/%s/frames' % i))) | |
426 | |
427 im = GetImage(_REMOTE, '/instances/%s/frames/0/preview' % i) | |
428 self.assertEqual("L", im.mode) | |
429 self.assertEqual(512, im.size[0]) | |
430 self.assertEqual(512, im.size[1]) | |
431 | |
432 DoGet(_REMOTE, '/instances/%s/frames/0/image-uint8' % i) | |
433 DoGet(_REMOTE, '/instances/%s/frames/0/image-uint16' % i) | |
434 DoGet(_REMOTE, '/instances/%s/frames/75/preview' % i) | |
435 self.assertRaises(Exception, lambda: DoGet(_REMOTE, '/instances/%s/frames/aaa/preview' % i)) | |
436 self.assertRaises(Exception, lambda: DoGet(_REMOTE, '/instances/%s/frames/76/preview' % i)) | |
437 | |
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438 |
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439 def test_changes(self): |
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440 # Check emptiness |
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441 c = DoGet(_REMOTE, '/changes') |
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442 self.assertEqual(0, len(c['Changes'])) |
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443 #self.assertEqual(0, c['Last']) # Not true anymore for Orthanc >= 1.5.2 |
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444 self.assertTrue(c['Done']) |
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445 c = DoGet(_REMOTE, '/changes?last') |
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446 self.assertEqual(0, len(c['Changes'])) |
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447 #self.assertEqual(0, c['Last']) # Not true anymore for Orthanc >= 1.5.2 |
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448 self.assertTrue(c['Done']) |
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449 |
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450 # Add 1 instance |
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451 i = UploadInstance(_REMOTE, 'Brainix/Flair/IM-0001-0001.dcm')['ID'] |
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452 c = DoGet(_REMOTE, '/changes') |
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453 begin = c['Last'] |
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454 self.assertEqual(4, len(c['Changes'])) |
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455 self.assertTrue(c['Done']) |
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456 self.assertEqual(c['Changes'][-1]['Seq'], c['Last']) |
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457 |
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458 c = DoGet(_REMOTE, '/changes?last') |
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459 self.assertEqual(1, len(c['Changes'])) |
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460 self.assertEqual(begin, c['Last']) |
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461 self.assertTrue(c['Done']) |
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462 c = DoGet(_REMOTE, '/changes?limit=1&since=' + str(begin - 1)) |
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463 self.assertEqual(1, len(c['Changes'])) |
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464 self.assertEqual(begin, c['Last']) |
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465 self.assertTrue(c['Done']) |
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466 c = DoGet(_REMOTE, '/changes?limit=1&since=' + str(begin - 2)) |
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467 self.assertEqual(1, len(c['Changes'])) |
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468 self.assertEqual(begin - 1, c['Last']) |
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469 self.assertFalse(c['Done']) |
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470 c = DoGet(_REMOTE, '/changes?limit=1&since=' + str(begin - 3)) |
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471 self.assertEqual(1, len(c['Changes'])) |
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472 self.assertEqual(begin - 2, c['Last']) |
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473 self.assertFalse(c['Done']) |
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474 |
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475 UploadFolder(_REMOTE, 'Knee/T1') |
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476 UploadFolder(_REMOTE, 'Knee/T2') |
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477 since = begin |
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478 countPatients = 0 |
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479 countStudies = 0 |
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480 countSeries = 0 |
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481 countInstances = 0 |
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482 completed = 0 |
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483 while True: |
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484 c = DoGet(_REMOTE, '/changes', { 'since' : since, 'limit' : 3 }) |
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485 since = c['Last'] |
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486 for i in c['Changes']: |
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487 if i['ResourceType'] == 'Instance': |
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488 countInstances += 1 |
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489 if i['ResourceType'] == 'Patient': |
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490 countPatients += 1 |
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491 if i['ResourceType'] == 'Study': |
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492 countStudies += 1 |
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493 if i['ResourceType'] == 'Series': |
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494 countSeries += 1 |
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495 if i['ChangeType'] == 'NewInstance': |
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496 countInstances += 1 |
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497 if i['ChangeType'] == 'NewPatient': |
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498 countPatients += 1 |
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499 if i['ChangeType'] == 'NewStudy': |
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500 countStudies += 1 |
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501 if i['ChangeType'] == 'NewSeries': |
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502 countSeries += 1 |
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503 if i['ChangeType'] == 'CompletedSeries': |
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504 completed += 1 |
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505 self.assertTrue('ID' in i) |
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506 self.assertTrue('Path' in i) |
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507 self.assertTrue('Seq' in i) |
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508 if c['Done']: |
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509 break |
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510 |
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511 self.assertEqual(2 * 50, countInstances) |
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512 self.assertEqual(2 * 1, countPatients) |
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513 self.assertEqual(2 * 1, countStudies) |
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514 self.assertEqual(2 * 2, countSeries) |
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515 self.assertEqual(0, completed) |
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516 |
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517 |
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518 def test_archive(self): |
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519 UploadInstance(_REMOTE, 'Knee/T1/IM-0001-0001.dcm') |
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520 UploadInstance(_REMOTE, 'Knee/T2/IM-0001-0001.dcm') |
192 | 521 knee = 'ca29faea-b6a0e17f-067743a1-8b778011-a48b2a17' |
522 | |
523 z = GetArchive(_REMOTE, '/patients/%s/archive' % knee) | |
8
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524 self.assertEqual(2, len(z.namelist())) |
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525 |
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526 z = GetArchive(_REMOTE, '/studies/%s/archive' % DoGet(_REMOTE, '/studies')[0]) |
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527 self.assertEqual(2, len(z.namelist())) |
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528 |
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529 z = GetArchive(_REMOTE, '/series/%s/archive' % DoGet(_REMOTE, '/series')[0]) |
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530 self.assertEqual(1, len(z.namelist())) |
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531 |
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532 UploadInstance(_REMOTE, 'Brainix/Flair/IM-0001-0001.dcm') |
192 | 533 brainix = '16738bc3-e47ed42a-43ce044c-a3414a45-cb069bd0' |
534 | |
535 z = GetArchive(_REMOTE, '/patients/%s/archive' % knee) | |
8
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536 self.assertEqual(2, len(z.namelist())) |
192 | 537 |
538 z = PostArchive(_REMOTE, '/tools/create-archive', { | |
539 'Resources' : [ brainix, knee ] | |
540 }) | |
541 self.assertEqual(3, len(z.namelist())) | |
542 | |
8
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543 |
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544 def test_media_archive(self): |
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545 UploadInstance(_REMOTE, 'Knee/T1/IM-0001-0001.dcm') |
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546 UploadInstance(_REMOTE, 'Knee/T2/IM-0001-0001.dcm') |
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547 |
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548 z = GetArchive(_REMOTE, '/patients/%s/media' % DoGet(_REMOTE, '/patients')[0]) |
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549 self.assertEqual(3, len(z.namelist())) |
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550 self.assertTrue('IMAGES/IM0' in z.namelist()) |
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551 self.assertTrue('IMAGES/IM1' in z.namelist()) |
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552 self.assertTrue('DICOMDIR' in z.namelist()) |
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553 |
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554 try: |
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555 os.remove('/tmp/DICOMDIR') |
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|
556 except: |
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557 # The file does not exist |
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558 pass |
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559 |
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560 z.extract('DICOMDIR', '/tmp') |
45 | 561 a = subprocess.check_output([ FindExecutable('dciodvfy'), '/tmp/DICOMDIR' ], |
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562 stderr = subprocess.STDOUT).split('\n') |
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563 self.assertEqual(3, len(a)) |
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564 self.assertTrue(a[0].startswith('Warning')) |
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565 self.assertEqual('BasicDirectory', a[1]) |
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566 self.assertEqual('', a[2]) |
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567 |
45 | 568 a = subprocess.check_output([ FindExecutable('dcentvfy'), '/tmp/DICOMDIR' ], |
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569 stderr = subprocess.STDOUT).split('\n') |
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570 self.assertEqual(1, len(a)) |
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571 self.assertEqual('', a[0]) |
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572 |
45 | 573 a = subprocess.check_output([ FindExecutable('dcm2xml'), '/tmp/DICOMDIR' ]) |
8
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574 self.assertTrue(re.search('1.3.46.670589.11.17521.5.0.3124.2008081908590448738', a) != None) |
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575 self.assertTrue(re.search('1.3.46.670589.11.17521.5.0.3124.2008081909113806560', a) != None) |
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576 |
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577 os.remove('/tmp/DICOMDIR') |
10 | 578 |
579 | |
580 def test_protection(self): | |
581 UploadInstance(_REMOTE, 'Knee/T1/IM-0001-0001.dcm') | |
582 UploadInstance(_REMOTE, 'Brainix/Flair/IM-0001-0001.dcm') | |
583 self.assertEqual(2, len(DoGet(_REMOTE, '/patients'))) | |
584 a = DoGet(_REMOTE, '/patients')[0] | |
585 b = DoGet(_REMOTE, '/patients')[1] | |
586 self.assertEqual(0, DoGet(_REMOTE, '/patients/%s/protected' % a)) | |
587 DoPut(_REMOTE, '/patients/%s/protected' % a, '0', 'text/plain') | |
588 self.assertEqual(0, DoGet(_REMOTE, '/patients/%s/protected' % a)) | |
589 DoPut(_REMOTE, '/patients/%s/protected' % a, '1', 'text/plain') | |
590 self.assertEqual(1, DoGet(_REMOTE, '/patients/%s/protected' % a)) | |
591 DoPut(_REMOTE, '/patients/%s/protected' % a, '0', 'text/plain') | |
592 self.assertEqual(0, DoGet(_REMOTE, '/patients/%s/protected' % a)) | |
593 | |
594 | |
12 | 595 def test_raw_tags(self): |
10 | 596 i = UploadInstance(_REMOTE, 'PrivateTags.dcm')['ID'] |
597 | |
598 dicom = DoGet(_REMOTE, '/instances/%s/file' % i) | |
599 self.assertEqual('1a7c56cb02d6e742cc9c856a8ac182e3', ComputeMD5(dicom)) | |
600 | |
601 s = '/instances/%s/content/' % i | |
602 | |
603 self.assertEqual('LOGIQBOOK', DoGet(_REMOTE, s + '0008-1010').strip()) | |
604 self.assertRaises(Exception, lambda: DoGet(_REMOTE, s + '0008-1011')) | |
605 | |
606 self.assertEqual('Abdomen', DoGet(_REMOTE, s + '7fe1-1001/0/7fe1-1008/0/7fe1-1057').strip()) | |
607 self.assertEqual('cla_3c', DoGet(_REMOTE, s + '7fe1-1001/0/7fe1-1008/8/7fe1-1057').strip()) | |
608 | |
609 UploadInstance(_REMOTE, 'Brainix/Epi/IM-0001-0001.dcm') | |
610 UploadInstance(_REMOTE, 'Brainix/Flair/IM-0001-0001.dcm') | |
611 UploadInstance(_REMOTE, 'Knee/T1/IM-0001-0001.dcm') | |
612 UploadInstance(_REMOTE, 'Knee/T2/IM-0001-0001.dcm') | |
613 | |
614 for i in DoGet(_REMOTE, '/instances'): | |
615 aid = DoGet(_REMOTE, '/instances/%s' % i)['MainDicomTags']['SOPInstanceUID'] | |
616 self.assertEqual(aid, DoGet(_REMOTE, '/instances/%s/content/0008-0018' % i).replace(chr(0), '')) | |
617 | |
618 | |
619 def test_raw_tags_mdn(self): | |
620 # Bug reported by Cyril Paulus | |
621 i = UploadInstance(_REMOTE, 'PrivateMDNTags.dcm')['ID'] | |
622 self.assertAlmostEqual(0.000027, DoGet(_REMOTE, '/instances/%s/content/7053-1000' % i)) | |
623 | |
624 | |
625 def test_modify_instance(self): | |
626 i = UploadInstance(_REMOTE, 'PrivateTags.dcm')['ID'] | |
627 modified = DoPost(_REMOTE, '/instances/%s/modify' % i, | |
628 json.dumps({ | |
629 "Replace" : { | |
630 "PatientName" : "hello", | |
631 #"PatientID" : "world" | |
632 }, | |
633 "Remove" : [ "StationName" ], | |
118
a954c535fef6
test_bitbucket_issue_55
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
117
diff
changeset
|
634 "RemovePrivateTags" : True |
10 | 635 }), |
636 'application/json') | |
637 j = DoPost(_REMOTE, '/instances', modified, 'application/dicom')['ID'] | |
638 | |
639 self.assertNotEqual('hello', DoGet(_REMOTE, '/instances/%s/content/0010-0010' % i).strip()) | |
640 #self.assertNotEqual('world', DoGet(_REMOTE, '/instances/%s/content/0010-0020' % i).strip()) | |
83 | 641 self.assertEqual('LOGIQBOOK', DoGet(_REMOTE, '/instances/%s/content/0008-1010' % i).strip()) |
10 | 642 DoGet(_REMOTE, '/instances/%s/content/6003-1010' % i) # Some private tag |
643 | |
644 self.assertEqual('hello', DoGet(_REMOTE, '/instances/%s/content/0010-0010' % j).strip()) | |
645 #self.assertEqual('world', DoGet(_REMOTE, '/instances/%s/content/0010-0020' % j).strip()) | |
646 self.assertRaises(Exception, lambda: DoGet(_REMOTE, '/instances/%s/content/0008-1010' % j)) | |
647 self.assertRaises(Exception, lambda: DoGet(_REMOTE, '/instances/%s/content/6003-1010' % j)) | |
648 | |
649 | |
650 def test_modify_series(self): | |
651 # Upload 4 images from the same series | |
652 for i in range(4): | |
653 UploadInstance(_REMOTE, 'Brainix/Epi/IM-0001-000%d.dcm' % (i + 1)) | |
654 | |
655 origSeries = DoGet(_REMOTE, '/series')[0] | |
656 newSeries = DoPost(_REMOTE, '/series/%s/modify' % origSeries, | |
657 '{"Replace":{"PatientName":"Jodogne"}}', | |
658 'application/json')['ID'] | |
659 | |
660 self.assertEqual(origSeries, DoGet(_REMOTE, '/series/%s' % newSeries)['ModifiedFrom']) | |
661 instances = DoGet(_REMOTE, '/series/%s' % newSeries)['Instances'] | |
662 self.assertEqual(4, len(instances)) | |
663 for i in instances: | |
664 j = DoGet(_REMOTE, '/instances/%s' % i)['ModifiedFrom'] | |
665 self.assertEqual(newSeries, DoGet(_REMOTE, '/instances/%s' % i)['ParentSeries']) | |
666 self.assertEqual(origSeries, DoGet(_REMOTE, '/instances/%s' % j)['ParentSeries']) | |
667 | |
668 self.assertEqual('Jodogne', DoGet(_REMOTE, '/instances/%s/content/0010-0010' % i).strip()) | |
669 self.assertNotEqual('Jodogne', DoGet(_REMOTE, '/instances/%s/content/0010-0010' % j).strip()) | |
670 | |
671 | |
672 def test_modify_study(self): | |
673 # Upload 4 images from the 2 series of the same study | |
674 for i in range(4): | |
675 UploadInstance(_REMOTE, 'Brainix/Flair/IM-0001-000%d.dcm' % (i + 1)) | |
676 UploadInstance(_REMOTE, 'Brainix/Epi/IM-0001-000%d.dcm' % (i + 1)) | |
677 | |
678 origStudy = DoGet(_REMOTE, '/studies')[0] | |
679 newStudy = DoPost(_REMOTE, '/studies/%s/modify' % origStudy, | |
680 '{"Replace":{"PatientName":"Jodogne"}}', | |
681 'application/json')['ID'] | |
682 | |
683 self.assertEqual(origStudy, DoGet(_REMOTE, '/studies/%s' % newStudy)['ModifiedFrom']) | |
684 series = DoGet(_REMOTE, '/studies/%s' % newStudy)['Series'] | |
685 self.assertEqual(2, len(series)) | |
686 for s in series: | |
687 ss = DoGet(_REMOTE, '/series/%s' % s)['ModifiedFrom'] | |
688 self.assertEqual(newStudy, DoGet(_REMOTE, '/series/%s' % s)['ParentStudy']) | |
689 self.assertEqual(origStudy, DoGet(_REMOTE, '/series/%s' % ss)['ParentStudy']) | |
690 | |
691 instances = DoGet(_REMOTE, '/series/%s' % s)['Instances'] | |
692 for i in instances: | |
693 j = DoGet(_REMOTE, '/instances/%s' % i)['ModifiedFrom'] | |
694 self.assertEqual(s, DoGet(_REMOTE, '/instances/%s' % i)['ParentSeries']) | |
695 self.assertEqual(ss, DoGet(_REMOTE, '/instances/%s' % j)['ParentSeries']) | |
696 | |
697 self.assertEqual('Jodogne', DoGet(_REMOTE, '/instances/%s/content/0010-0010' % i).strip()) | |
698 self.assertNotEqual('Jodogne', DoGet(_REMOTE, '/instances/%s/content/0010-0010' % j).strip()) | |
699 | |
700 | |
701 def test_anonymize_series(self): | |
702 # Upload 4 images from the same series | |
703 for i in range(4): | |
704 UploadInstance(_REMOTE, 'Brainix/Epi/IM-0001-000%d.dcm' % (i + 1)) | |
705 | |
706 origSeries = DoGet(_REMOTE, '/series')[0] | |
707 newSeries = DoPost(_REMOTE, '/series/%s/anonymize' % origSeries, | |
708 '{}', | |
709 'application/json')['ID'] | |
710 | |
711 self.assertEqual(origSeries, DoGet(_REMOTE, '/series/%s' % newSeries)['AnonymizedFrom']) | |
712 instances = DoGet(_REMOTE, '/series/%s' % newSeries)['Instances'] | |
713 self.assertEqual(4, len(instances)) | |
714 for i in instances: | |
715 j = DoGet(_REMOTE, '/instances/%s' % i)['AnonymizedFrom'] | |
716 self.assertEqual(newSeries, DoGet(_REMOTE, '/instances/%s' % i)['ParentSeries']) | |
717 self.assertEqual(origSeries, DoGet(_REMOTE, '/instances/%s' % j)['ParentSeries']) | |
718 | |
719 DoGet(_REMOTE, '/instances/%s/content/0008-1010' % j) | |
720 self.assertRaises(Exception, lambda: DoGet(_REMOTE, '/instances/%s/content/0008-1010' % i)) | |
721 | |
722 | |
723 def test_anonymize_study(self): | |
724 # Upload 4 images from the 2 series of the same study | |
725 for i in range(4): | |
726 UploadInstance(_REMOTE, 'Brainix/Flair/IM-0001-000%d.dcm' % (i + 1)) | |
727 UploadInstance(_REMOTE, 'Brainix/Epi/IM-0001-000%d.dcm' % (i + 1)) | |
728 | |
729 origStudy = DoGet(_REMOTE, '/studies')[0] | |
730 newStudy = DoPost(_REMOTE,'/studies/%s/anonymize' % origStudy, | |
731 '{"Replace":{"PatientName":"Jodogne"}}', | |
732 'application/json')['ID'] | |
733 | |
734 self.assertEqual(origStudy, DoGet(_REMOTE, '/studies/%s' % newStudy)['AnonymizedFrom']) | |
735 series = DoGet(_REMOTE, '/studies/%s' % newStudy)['Series'] | |
736 self.assertEqual(2, len(series)) | |
737 for s in series: | |
738 ss = DoGet(_REMOTE, '/series/%s' % s)['AnonymizedFrom'] | |
739 self.assertEqual(newStudy, DoGet(_REMOTE, '/series/%s' % s)['ParentStudy']) | |
740 self.assertEqual(origStudy, DoGet(_REMOTE, '/series/%s' % ss)['ParentStudy']) | |
741 | |
742 instances = DoGet(_REMOTE, '/series/%s' % s)['Instances'] | |
743 for i in instances: | |
744 j = DoGet(_REMOTE, '/instances/%s' % i)['AnonymizedFrom'] | |
745 self.assertEqual(s, DoGet(_REMOTE, '/instances/%s' % i)['ParentSeries']) | |
746 self.assertEqual(ss, DoGet(_REMOTE, '/instances/%s' % j)['ParentSeries']) | |
747 | |
748 self.assertEqual('Jodogne', DoGet(_REMOTE, '/instances/%s/content/0010-0010' % i).strip()) | |
749 self.assertNotEqual('Jodogne', DoGet(_REMOTE, '/instances/%s/content/0010-0010' % j).strip()) | |
11 | 750 |
751 | |
752 | |
753 def test_storescu(self): | |
754 # Check emptiness | |
755 e = DoGet(_REMOTE, '/exports') | |
756 self.assertEqual(0, len(e['Exports'])) | |
757 self.assertEqual(0, e['Last']) | |
758 self.assertTrue(e['Done']) | |
759 e = DoGet(_REMOTE, '/exports?last') | |
760 self.assertEqual(0, len(e['Exports'])) | |
761 self.assertEqual(0, e['Last']) | |
762 self.assertTrue(e['Done']) | |
763 | |
764 # Add 1 instance | |
765 i = UploadInstance(_REMOTE, 'DummyCT.dcm')['ID'] | |
766 self.assertEqual(0, len(DoGet(_LOCAL, '/patients'))) | |
767 | |
768 # Export the instance | |
769 j = DoPost(_REMOTE, '/modalities/orthanctest/store', str(i), 'text/plain') # instance | |
770 self.assertEqual(1, len(DoGet(_LOCAL, '/patients'))) | |
771 self.assertEqual(1, len(DoGet(_LOCAL, '/studies'))) | |
772 self.assertEqual(1, len(DoGet(_LOCAL, '/series'))) | |
773 self.assertEqual(1, len(DoGet(_LOCAL, '/instances'))) | |
774 | |
775 e = DoGet(_REMOTE, '/exports') | |
776 self.assertEqual(1, len(e['Exports'])) | |
777 self.assertTrue(e['Done']) | |
778 self.assertEqual(e['Exports'][-1]['Seq'], e['Last']) | |
779 e = DoGet(_REMOTE, '/exports?limit=1') | |
780 self.assertEqual(1, len(e['Exports'])) | |
781 self.assertTrue(e['Done']) | |
782 self.assertEqual(e['Exports'][-1]['Seq'], e['Last']) | |
783 e = DoGet(_REMOTE, '/exports?last') | |
784 self.assertEqual(1, len(e['Exports'])) | |
785 self.assertTrue(e['Done']) | |
786 self.assertEqual(e['Exports'][-1]['Seq'], e['Last']) | |
787 seqInstance = e['Last'] | |
788 | |
789 # Export the series | |
790 j = DoPost(_REMOTE, '/modalities/orthanctest/store', 'f2635388-f01d497a-15f7c06b-ad7dba06-c4c599fe', 'text/plain') | |
791 | |
792 e = DoGet(_REMOTE, '/exports') | |
793 self.assertEqual(2, len(e['Exports'])) | |
794 self.assertTrue(e['Done']) | |
795 self.assertEqual(e['Exports'][-1]['Seq'], e['Last']) | |
796 seqSeries = e['Last'] | |
797 self.assertNotEqual(seqInstance, seqSeries) | |
798 e = DoGet(_REMOTE, '/exports?limit=1&since=0') | |
799 self.assertEqual(1, len(e['Exports'])) | |
800 self.assertFalse(e['Done']) | |
801 self.assertEqual(e['Exports'][-1]['Seq'], seqInstance) | |
802 e = DoGet(_REMOTE, '/exports?limit=1&since=' + str(seqInstance)) | |
803 self.assertEqual(1, len(e['Exports'])) | |
804 self.assertTrue(e['Done']) | |
805 self.assertEqual(e['Exports'][-1]['Seq'], seqSeries) | |
806 e = DoGet(_REMOTE, '/exports?last') | |
807 self.assertEqual(1, len(e['Exports'])) | |
808 self.assertTrue(e['Done']) | |
809 self.assertEqual(e['Exports'][-1]['Seq'], seqSeries) | |
810 | |
811 # Export the study | |
812 j = DoPost(_REMOTE, '/modalities/orthanctest/store', 'b9c08539-26f93bde-c81ab0d7-bffaf2cb-a4d0bdd0', 'text/plain') | |
813 seqStudy = DoGet(_REMOTE, '/exports')['Last'] | |
814 | |
815 # Export the patient | |
816 j = DoPost(_REMOTE, '/modalities/orthanctest/store', '6816cb19-844d5aee-85245eba-28e841e6-2414fae2', 'text/plain') | |
817 self.assertEqual(1, len(DoGet(_LOCAL, '/patients'))) | |
818 self.assertEqual(1, len(DoGet(_LOCAL, '/studies'))) | |
819 self.assertEqual(1, len(DoGet(_LOCAL, '/series'))) | |
820 self.assertEqual(1, len(DoGet(_LOCAL, '/instances'))) | |
821 | |
822 e = DoGet(_REMOTE, '/exports') | |
823 self.assertEqual(4, len(e['Exports'])) | |
824 self.assertTrue(e['Done']) | |
825 self.assertEqual(e['Exports'][-1]['Seq'], e['Last']) | |
826 seqPatient = e['Last'] | |
827 self.assertNotEqual(seqInstance, seqSeries) | |
828 self.assertNotEqual(seqSeries, seqStudy) | |
829 self.assertNotEqual(seqStudy, seqPatient) | |
830 self.assertTrue(seqInstance < seqSeries) | |
831 self.assertTrue(seqSeries < seqStudy) | |
832 self.assertTrue(seqStudy < seqPatient) | |
833 e = DoGet(_REMOTE, '/exports?limit=1&since=0') | |
834 self.assertEqual(1, len(e['Exports'])) | |
835 self.assertFalse(e['Done']) | |
836 self.assertEqual(e['Exports'][-1]['Seq'], seqInstance) | |
837 e = DoGet(_REMOTE, '/exports?limit=1&since=' + str(seqInstance)) | |
838 self.assertEqual(1, len(e['Exports'])) | |
839 self.assertFalse(e['Done']) | |
840 self.assertEqual(e['Exports'][-1]['Seq'], seqSeries) | |
841 e = DoGet(_REMOTE, '/exports?limit=1&since=' + str(seqSeries)) | |
842 self.assertEqual(1, len(e['Exports'])) | |
843 self.assertFalse(e['Done']) | |
844 self.assertEqual(e['Exports'][-1]['Seq'], seqStudy) | |
845 e = DoGet(_REMOTE, '/exports?limit=1&since=' + str(seqStudy)) | |
846 self.assertEqual(1, len(e['Exports'])) | |
847 self.assertTrue(e['Done']) | |
848 self.assertEqual(e['Exports'][-1]['Seq'], seqPatient) | |
849 e = DoGet(_REMOTE, '/exports?last') | |
850 self.assertEqual(1, len(e['Exports'])) | |
851 self.assertTrue(e['Done']) | |
852 self.assertEqual(e['Exports'][-1]['Seq'], seqPatient) | |
853 | |
854 | |
855 # Check the content of the logged information | |
856 e = DoGet(_REMOTE, '/exports')['Exports'] | |
857 | |
858 if 'PatientID' in e[0]: | |
859 # Since Orthanc 0.8.6 | |
860 patient = 'PatientID' | |
861 study = 'StudyInstanceUID' | |
862 series = 'SeriesInstanceUID' | |
863 instance = 'SOPInstanceUID' | |
864 else: | |
865 # Up to Orthanc 0.8.5 | |
866 patient = 'PatientId' | |
867 study = 'StudyInstanceUid' | |
868 series = 'SeriesInstanceUid' | |
869 instance = 'SopInstanceUid' | |
870 | |
871 for k in range(4): | |
872 self.assertTrue('Date' in e[k]) | |
873 self.assertTrue('Seq' in e[k]) | |
874 self.assertEqual('orthanctest', e[k]['RemoteModality']) | |
875 | |
876 self.assertEqual(10, len(e[0])) | |
877 self.assertEqual('Instance', e[0]['ResourceType']) | |
878 self.assertEqual('66a662ce-7430e543-bad44d47-0dc5a943-ec7a538d', e[0]['ID']) | |
879 self.assertEqual('/instances/66a662ce-7430e543-bad44d47-0dc5a943-ec7a538d', e[0]['Path']) | |
880 self.assertEqual('1.2.840.113619.2.176.2025.1499492.7040.1171286242.109', e[0][instance]) | |
881 self.assertEqual('1.2.840.113619.2.176.2025.1499492.7391.1171285944.394', e[0][series]) | |
882 self.assertEqual('1.2.840.113619.2.176.2025.1499492.7391.1171285944.390', e[0][study]) | |
883 self.assertEqual('ozp00SjY2xG', e[0][patient]) | |
884 | |
885 self.assertEqual(9, len(e[1])) | |
886 self.assertEqual('Series', e[1]['ResourceType']) | |
887 self.assertEqual('f2635388-f01d497a-15f7c06b-ad7dba06-c4c599fe', e[1]['ID']) | |
888 self.assertEqual('/series/f2635388-f01d497a-15f7c06b-ad7dba06-c4c599fe', e[1]['Path']) | |
889 self.assertEqual('1.2.840.113619.2.176.2025.1499492.7391.1171285944.394', e[1][series]) | |
890 self.assertEqual('1.2.840.113619.2.176.2025.1499492.7391.1171285944.390', e[1][study]) | |
891 self.assertEqual('ozp00SjY2xG', e[1][patient]) | |
892 | |
893 self.assertEqual(8, len(e[2])) | |
894 self.assertEqual('Study', e[2]['ResourceType']) | |
895 self.assertEqual('b9c08539-26f93bde-c81ab0d7-bffaf2cb-a4d0bdd0', e[2]['ID']) | |
896 self.assertEqual('/studies/b9c08539-26f93bde-c81ab0d7-bffaf2cb-a4d0bdd0', e[2]['Path']) | |
897 self.assertEqual('1.2.840.113619.2.176.2025.1499492.7391.1171285944.390', e[2][study]) | |
898 self.assertEqual('ozp00SjY2xG', e[2][patient]) | |
899 | |
900 self.assertEqual(7, len(e[3])) | |
901 self.assertEqual('Patient', e[3]['ResourceType']) | |
902 self.assertEqual('6816cb19-844d5aee-85245eba-28e841e6-2414fae2', e[3]['ID']) | |
903 self.assertEqual('/patients/6816cb19-844d5aee-85245eba-28e841e6-2414fae2', e[3]['Path']) | |
904 self.assertEqual('ozp00SjY2xG', e[3][patient]) | |
905 | |
906 DropOrthanc(_REMOTE) | |
907 self.assertEqual(0, len(DoGet(_REMOTE, '/exports')['Exports'])) | |
908 | |
909 | |
910 def test_store_peer(self): | |
911 self.assertEqual(0, len(DoGet(_LOCAL, '/exports')['Exports'])) | |
912 self.assertEqual(0, len(DoGet(_REMOTE, '/exports')['Exports'])) | |
913 | |
914 i = UploadInstance(_REMOTE, 'DummyCT.dcm')['ID'] | |
915 self.assertEqual(0, len(DoGet(_LOCAL, '/patients'))) | |
916 self.assertEqual(1, len(DoGet(_REMOTE, '/patients'))) | |
917 | |
918 j = DoPost(_REMOTE, '/peers/peer/store', str(i), 'text/plain') | |
919 self.assertEqual(1, len(DoGet(_LOCAL, '/patients'))) | |
920 self.assertEqual(1, len(DoGet(_REMOTE, '/patients'))) | |
921 | |
922 self.assertEqual(1, len(DoGet(_REMOTE, '/exports')['Exports'])) | |
923 | |
924 DropOrthanc(_REMOTE) | |
925 self.assertEqual(0, len(DoGet(_REMOTE, '/exports')['Exports'])) | |
926 | |
927 | |
928 def test_bulk_storescu(self): | |
929 self.assertEqual(0, len(DoGet(_LOCAL, '/patients'))) | |
930 | |
931 a = UploadInstance(_REMOTE, 'Knee/T1/IM-0001-0001.dcm') | |
932 b = UploadInstance(_REMOTE, 'Knee/T2/IM-0001-0001.dcm') | |
933 | |
934 j = DoPost(_REMOTE, '/modalities/orthanctest/store', [ a['ID'], b['ID'] ], 'application/json') | |
935 self.assertEqual(2, len(DoGet(_LOCAL, '/instances'))) | |
936 | |
937 DropOrthanc(_LOCAL) | |
938 | |
939 # Send using patient's UUID | |
940 self.assertEqual(0, len(DoGet(_LOCAL, '/instances'))) | |
941 j = DoPost(_REMOTE, '/modalities/orthanctest/store', | |
942 [ 'ca29faea-b6a0e17f-067743a1-8b778011-a48b2a17' ], 'application/json') | |
943 self.assertEqual(2, len(DoGet(_LOCAL, '/instances'))) | |
944 | |
945 | |
946 def test_color(self): | |
947 i = UploadInstance(_REMOTE, 'ColorTestMalaterre.dcm')['ID'] | |
948 im = GetImage(_REMOTE, '/instances/%s/preview' % i) | |
949 self.assertEqual("RGB", im.mode) | |
950 self.assertEqual(41, im.size[0]) | |
951 self.assertEqual(41, im.size[1]) | |
952 | |
953 # http://effbot.org/zone/pil-comparing-images.htm | |
13 | 954 truth = Image.open(GetDatabasePath('ColorTestMalaterre.png')) |
11 | 955 self.assertTrue(ImageChops.difference(im, truth).getbbox() is None) |
956 | |
957 | |
12 | 958 def test_faking_ruby_put(self): |
959 UploadInstance(_REMOTE, 'Knee/T1/IM-0001-0001.dcm') | |
960 UploadInstance(_REMOTE, 'Brainix/Flair/IM-0001-0001.dcm') | |
961 self.assertEqual(2, len(DoGet(_REMOTE, '/patients'))) | |
962 a = DoGet(_REMOTE, '/patients')[0] | |
963 b = DoGet(_REMOTE, '/patients')[1] | |
964 self.assertEqual(0, DoGet(_REMOTE, '/patients/%s/protected' % a)) | |
965 DoGet(_REMOTE, '/patients/%s/protected' % a, data = { '_method' : 'PUT' }, body = '0') | |
966 self.assertEqual(0, DoGet(_REMOTE, '/patients/%s/protected' % a)) | |
967 DoGet(_REMOTE, '/patients/%s/protected' % a, data = { '_method' : 'PUT' }, body = '1') | |
968 self.assertEqual(1, DoGet(_REMOTE, '/patients/%s/protected' % a)) | |
969 DoGet(_REMOTE, '/patients/%s/protected' % a, data = { '_method' : 'PUT' }, body = '0') | |
970 self.assertEqual(0, DoGet(_REMOTE, '/patients/%s/protected' % a)) | |
971 | |
972 | |
973 def test_faking_ruby_delete(self): | |
974 UploadInstance(_REMOTE, 'Knee/T1/IM-0001-0001.dcm') | |
975 UploadInstance(_REMOTE, 'Brainix/Flair/IM-0001-0001.dcm') | |
976 self.assertEqual(2, len(DoGet(_REMOTE, '/patients'))) | |
977 a = DoGet(_REMOTE, '/patients')[0] | |
978 b = DoGet(_REMOTE, '/patients')[1] | |
979 DoGet(_REMOTE, '/patients/%s' % a, data = { '_method' : 'DELETE' }) | |
980 self.assertEqual(1, len(DoGet(_REMOTE, '/patients'))) | |
981 DoGet(_REMOTE, '/patients/%s' % b, data = { '_method' : 'DELETE' }) | |
982 self.assertEqual(0, len(DoGet(_REMOTE, '/patients'))) | |
983 | |
984 | |
985 def test_faking_google_put(self): | |
986 UploadInstance(_REMOTE, 'Knee/T1/IM-0001-0001.dcm') | |
987 UploadInstance(_REMOTE, 'Brainix/Flair/IM-0001-0001.dcm') | |
988 self.assertEqual(2, len(DoGet(_REMOTE, '/patients'))) | |
989 a = DoGet(_REMOTE, '/patients')[0] | |
990 b = DoGet(_REMOTE, '/patients')[1] | |
991 self.assertEqual(0, DoGet(_REMOTE, '/patients/%s/protected' % a)) | |
992 DoPost(_REMOTE, '/patients/%s/protected' % a, headers = { 'X-HTTP-Method-Override' : 'PUT' }, data = '0') | |
993 self.assertEqual(0, DoGet(_REMOTE, '/patients/%s/protected' % a)) | |
994 DoPost(_REMOTE, '/patients/%s/protected' % a, headers = { 'X-HTTP-Method-Override' : 'PUT' }, data = '1') | |
995 self.assertEqual(1, DoGet(_REMOTE, '/patients/%s/protected' % a)) | |
996 DoPost(_REMOTE, '/patients/%s/protected' % a, headers = { 'X-HTTP-Method-Override' : 'PUT' }, data = '0') | |
997 self.assertEqual(0, DoGet(_REMOTE, '/patients/%s/protected' % a)) | |
998 | |
999 | |
1000 def test_faking_google_delete(self): | |
1001 UploadInstance(_REMOTE, 'Knee/T1/IM-0001-0001.dcm') | |
1002 UploadInstance(_REMOTE, 'Brainix/Flair/IM-0001-0001.dcm') | |
1003 self.assertEqual(2, len(DoGet(_REMOTE, '/patients'))) | |
1004 a = DoGet(_REMOTE, '/patients')[0] | |
1005 b = DoGet(_REMOTE, '/patients')[1] | |
1006 DoPost(_REMOTE, '/patients/%s' % a, headers = { 'X-HTTP-Method-Override' : 'DELETE' }) | |
1007 self.assertEqual(1, len(DoGet(_REMOTE, '/patients'))) | |
1008 DoPost(_REMOTE, '/patients/%s' % b, headers = { 'X-HTTP-Method-Override' : 'DELETE' }) | |
1009 self.assertEqual(0, len(DoGet(_REMOTE, '/patients'))) | |
1010 | |
1011 | |
1012 def test_lua(self): | |
1013 self.assertEqual(42, DoPost(_REMOTE, '/tools/execute-script', 'print(42)')) | |
1014 self.assertTrue(IsDefinedInLua(_REMOTE, 'PrintRecursive')) | |
1015 self.assertFalse(IsDefinedInLua(_REMOTE, 'HelloWorld')) | |
1016 | |
1017 | |
1018 def test_metadata(self): | |
1019 UploadInstance(_REMOTE, 'Knee/T1/IM-0001-0001.dcm') | |
1020 p = DoGet(_REMOTE, '/patients')[0] | |
1021 i = DoGet(_REMOTE, '/instances')[0] | |
369
24d93b42873a
test "RemoteAET" metadata at series level
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
368
diff
changeset
|
1022 series = DoGet(_REMOTE, '/series')[0] |
12 | 1023 |
1024 m = DoGet(_REMOTE, '/patients/%s/metadata' % p) | |
1025 self.assertEqual(1, len(m)) | |
1026 self.assertEqual('LastUpdate', m[0]) | |
1027 | |
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1028 # The lines below failed on Orthanc <= 1.8.2 |
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1029 self.assertRaises(Exception, lambda: DoGet(_REMOTE, '/studies/%s/metadata' % p)) |
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1030 self.assertRaises(Exception, lambda: DoGet(_REMOTE, '/series/%s/metadata' % p)) |
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1031 self.assertRaises(Exception, lambda: DoGet(_REMOTE, '/instances/%s/metadata' % p)) |
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1032 |
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1033 m = DoGet(_REMOTE, '/studies/%s/metadata' % DoGet(_REMOTE, '/studies')[0]) |
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1034 self.assertEqual(1, len(m)) |
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1035 self.assertEqual('LastUpdate', m[0]) |
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1036 |
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1037 m = DoGet(_REMOTE, '/series/%s/metadata' % series) |
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1038 self.assertEqual(2, len(m)) |
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1039 self.assertTrue('LastUpdate' in m) |
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1040 |
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1041 # New in Orthanc 1.9.0 |
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1042 self.assertTrue('RemoteAET' in m) |
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1043 self.assertEqual(DoGet(_REMOTE, '/series/%s/metadata/RemoteAET' % series), '') # None, received by REST API |
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1044 |
12 | 1045 m = DoGet(_REMOTE, '/instances/%s/metadata' % i) |
145 | 1046 self.assertEqual(8, len(m)) |
12 | 1047 self.assertTrue('IndexInSeries' in m) |
1048 self.assertTrue('ReceptionDate' in m) | |
1049 self.assertTrue('RemoteAET' in m) | |
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1050 self.assertTrue('Origin' in m) |
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1051 self.assertTrue('TransferSyntax' in m) |
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1052 self.assertTrue('SopClassUid' in m) |
145 | 1053 self.assertTrue('RemoteIP' in m) |
1054 self.assertTrue('HttpUsername' in m) | |
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1055 self.assertEqual(DoGet(_REMOTE, '/instances/%s/metadata/IndexInSeries' % i), 1) |
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1056 self.assertEqual(DoGet(_REMOTE, '/instances/%s/metadata/Origin' % i), 'RestApi') |
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1057 self.assertEqual(DoGet(_REMOTE, '/instances/%s/metadata/RemoteAET' % i), '') # None, received by REST API |
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1058 self.assertEqual(DoGet(_REMOTE, '/instances/%s/metadata/TransferSyntax' % i), '1.2.840.10008.1.2.4.91') # JPEG2k |
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1059 self.assertEqual(DoGet(_REMOTE, '/instances/%s/metadata/SopClassUid' % i), '1.2.840.10008.5.1.4.1.1.4') |
12 | 1060 |
1061 # Play with custom metadata | |
1062 DoPut(_REMOTE, '/patients/%s/metadata/5555' % p, 'coucou') | |
1063 m = DoGet(_REMOTE, '/patients/%s/metadata' % p) | |
1064 self.assertEqual(2, len(m)) | |
1065 self.assertTrue('LastUpdate' in m) | |
1066 self.assertTrue('5555' in m) | |
1067 self.assertEqual('coucou', DoGet(_REMOTE, '/patients/%s/metadata/5555' % p)) | |
1068 DoPut(_REMOTE, '/patients/%s/metadata/5555' % p, 'hello') | |
1069 self.assertEqual('hello', DoGet(_REMOTE, '/patients/%s/metadata/5555' % p)) | |
1070 DoDelete(_REMOTE, '/patients/%s/metadata/5555' % p) | |
1071 m = DoGet(_REMOTE, '/patients/%s/metadata' % p) | |
1072 self.assertEqual(1, len(m)) | |
1073 self.assertTrue('LastUpdate' in m) | |
13 | 1074 |
1075 | |
1076 def test_statistics(self): | |
1077 # Upload 16 instances | |
1078 for i in range(4): | |
1079 UploadInstance(_REMOTE, 'Brainix/Flair/IM-0001-000%d.dcm' % (i + 1)) | |
1080 UploadInstance(_REMOTE, 'Brainix/Epi/IM-0001-000%d.dcm' % (i + 1)) | |
1081 UploadInstance(_REMOTE, 'Knee/T1/IM-0001-000%d.dcm' % (i + 1)) | |
1082 UploadInstance(_REMOTE, 'Knee/T2/IM-0001-000%d.dcm' % (i + 1)) | |
1083 | |
1084 s = DoGet(_REMOTE, '/statistics') | |
1085 self.assertEqual(16, s['CountInstances']) | |
1086 self.assertEqual(2, s['CountPatients']) | |
1087 self.assertEqual(2, s['CountStudies']) | |
1088 self.assertEqual(4, s['CountSeries']) | |
1089 d = int(s['TotalUncompressedSize']) | |
1090 | |
1091 e = 0 | |
1092 for patient in DoGet(_REMOTE, '/patients'): | |
1093 s = DoGet(_REMOTE, '/patients/%s/statistics' % patient) | |
1094 self.assertEqual(8, s['CountInstances']) | |
1095 self.assertEqual(1, s['CountStudies']) | |
1096 self.assertEqual(2, s['CountSeries']) | |
1097 e += int(s['UncompressedSize']) | |
1098 | |
1099 for study in DoGet(_REMOTE, '/studies'): | |
1100 s = DoGet(_REMOTE, '/studies/%s/statistics' % study) | |
1101 self.assertEqual(8, s['CountInstances']) | |
1102 self.assertEqual(2, s['CountSeries']) | |
1103 e += int(s['UncompressedSize']) | |
1104 | |
1105 for series in DoGet(_REMOTE, '/series'): | |
1106 s = DoGet(_REMOTE, '/series/%s/statistics' % series) | |
1107 self.assertEqual(4, s['CountInstances']) | |
1108 e += int(s['UncompressedSize']) | |
1109 | |
1110 self.assertEqual(3 * d, e) | |
1111 | |
1112 | |
1113 def test_custom_attachment(self): | |
1114 UploadInstance(_REMOTE, 'Brainix/Flair/IM-0001-0001.dcm') | |
1115 patient = DoGet(_REMOTE, '/patients')[0] | |
1116 instance = DoGet(_REMOTE, '/instances')[0] | |
1117 size = int(DoGet(_REMOTE, '/patients/%s/statistics' % patient)['DiskSize']) | |
1118 self.assertEqual(size, int(DoGet(_REMOTE, '/statistics')['TotalDiskSize'])) | |
1119 | |
1120 self.assertEqual(0, len(DoGet(_REMOTE, '/patients/%s/attachments' % patient))) | |
1121 self.assertEqual(2, len(DoGet(_REMOTE, '/instances/%s/attachments' % instance))) | |
1122 self.assertTrue('dicom' in DoGet(_REMOTE, '/instances/%s/attachments' % instance)) | |
1123 self.assertTrue('dicom-as-json' in DoGet(_REMOTE, '/instances/%s/attachments' % instance)) | |
1124 | |
1125 self.assertRaises(Exception, lambda: DoPut(_REMOTE, '/patients/%s/attachments/22' % patient, 'hello')) | |
1126 hello = 'hellohellohellohellohellohellohellohellohello' | |
1127 DoPut(_REMOTE, '/patients/%s/attachments/1025' % patient, hello) | |
1128 self.assertEqual(int(DoGet(_REMOTE, '/patients/%s/statistics' % patient)['DiskSize']), | |
1129 int(DoGet(_REMOTE, '/statistics')['TotalDiskSize'])) | |
1130 self.assertEqual(int(DoGet(_REMOTE, '/patients/%s/statistics' % patient)['DiskSize']), | |
1131 size + int(DoGet(_REMOTE, '/patients/%s/attachments/1025/compressed-size' % patient))) | |
1132 | |
1133 DoPut(_REMOTE, '/patients/%s/attachments/1026' % patient, 'world') | |
1134 self.assertEqual(int(DoGet(_REMOTE, '/patients/%s/statistics' % patient)['DiskSize']), | |
1135 int(DoGet(_REMOTE, '/statistics')['TotalDiskSize'])) | |
1136 self.assertEqual(int(DoGet(_REMOTE, '/patients/%s/statistics' % patient)['DiskSize']), | |
1137 size + | |
1138 int(DoGet(_REMOTE, '/patients/%s/attachments/1025/compressed-size' % patient)) + | |
1139 int(DoGet(_REMOTE, '/patients/%s/attachments/1026/compressed-size' % patient))) | |
1140 | |
1141 self.assertEqual(2, len(DoGet(_REMOTE, '/patients/%s/attachments' % patient))) | |
1142 self.assertEqual(hello, DoGet(_REMOTE, '/patients/%s/attachments/1025/data' % patient)) | |
1143 self.assertEqual('world', DoGet(_REMOTE, '/patients/%s/attachments/1026/data' % patient)) | |
1144 DoPost(_REMOTE, '/patients/%s/attachments/1025/verify-md5' % patient) | |
1145 DoPost(_REMOTE, '/patients/%s/attachments/1026/verify-md5' % patient) | |
1146 DoPut(_REMOTE, '/patients/%s/attachments/1026' % patient, 'world2') | |
1147 self.assertEqual('world2', DoGet(_REMOTE, '/patients/%s/attachments/1026/data' % patient)) | |
1148 | |
1149 self.assertRaises(Exception, lambda: DoDelete(_REMOTE, '/instances/%s/attachments/dicom' % instance)) | |
1150 DoDelete(_REMOTE, '/patients/%s/attachments/1025' % patient) | |
1151 self.assertEqual(int(DoGet(_REMOTE, '/patients/%s/statistics' % patient)['DiskSize']), | |
1152 int(DoGet(_REMOTE, '/statistics')['TotalDiskSize'])) | |
1153 self.assertEqual(int(DoGet(_REMOTE, '/patients/%s/statistics' % patient)['DiskSize']), | |
1154 size + int(DoGet(_REMOTE, '/patients/%s/attachments/1026/compressed-size' % patient))) | |
1155 | |
1156 self.assertEqual(1, len(DoGet(_REMOTE, '/patients/%s/attachments' % patient))) | |
1157 DoDelete(_REMOTE, '/patients/%s/attachments/1026' % patient) | |
1158 self.assertEqual(0, len(DoGet(_REMOTE, '/patients/%s/attachments' % patient))) | |
1159 | |
1160 self.assertEqual(int(DoGet(_REMOTE, '/patients/%s/statistics' % patient)['DiskSize']), size) | |
1161 self.assertEqual(size, int(DoGet(_REMOTE, '/statistics')['TotalDiskSize'])) | |
1162 | |
1163 | |
1164 def test_incoming_storescu(self): | |
1165 self.assertEqual(0, len(DoGet(_REMOTE, '/patients'))) | |
45 | 1166 subprocess.check_call([ FindExecutable('storescu'), |
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1167 _REMOTE['Server'], str(_REMOTE['DicomPort']), |
13 | 1168 GetDatabasePath('ColorTestImageJ.dcm') ]) |
1169 self.assertEqual(1, len(DoGet(_REMOTE, '/patients'))) | |
1170 | |
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1171 i = DoGet(_REMOTE, '/instances') |
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1172 self.assertEqual(1, len(i)) |
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1173 m = DoGet(_REMOTE, '/instances/%s/metadata' % i[0]) |
145 | 1174 self.assertEqual(8, len(m)) |
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1175 self.assertTrue('IndexInSeries' in m) |
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1176 self.assertTrue('ReceptionDate' in m) |
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1177 self.assertTrue('RemoteAET' in m) |
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1178 self.assertTrue('Origin' in m) |
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1179 self.assertTrue('TransferSyntax' in m) |
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1180 self.assertTrue('SopClassUid' in m) |
145 | 1181 self.assertTrue('RemoteIP' in m) |
1182 self.assertTrue('CalledAET' in m) | |
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1183 self.assertEqual(DoGet(_REMOTE, '/instances/%s/metadata/IndexInSeries' % i[0]), 1) |
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1184 self.assertEqual(DoGet(_REMOTE, '/instances/%s/metadata/Origin' % i[0]), 'DicomProtocol') |
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1185 self.assertEqual(DoGet(_REMOTE, '/instances/%s/metadata/RemoteAET' % i[0]), 'STORESCU') |
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1186 self.assertEqual(DoGet(_REMOTE, '/instances/%s/metadata/TransferSyntax' % i[0]), '1.2.840.10008.1.2.1') |
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1187 self.assertEqual(DoGet(_REMOTE, '/instances/%s/metadata/SopClassUid' % i[0]), '1.2.840.10008.5.1.4.1.1.7') |
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1188 |
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1189 series = DoGet(_REMOTE, '/series')[0] |
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1190 m = DoGet(_REMOTE, '/series/%s/metadata' % series) |
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1191 self.assertEqual(2, len(m)) |
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1192 self.assertTrue('LastUpdate' in m) |
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1193 self.assertTrue('RemoteAET' in m) |
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1194 self.assertEqual(DoGet(_REMOTE, '/series/%s/metadata/RemoteAET' % series), 'STORESCU') |
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1195 self.assertEqual(DoGet(_REMOTE, '/series/%s/metadata/LastUpdate' % series), |
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1196 DoGet(_REMOTE, '/instances/%s/metadata/ReceptionDate' % i[0])) |
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1197 |
13 | 1198 |
1199 def test_incoming_findscu(self): | |
1200 UploadInstance(_REMOTE, 'Multiframe.dcm') | |
1201 UploadInstance(_REMOTE, 'ColorTestImageJ.dcm') | |
1202 | |
1203 i = CallFindScu([ '-k', '0008,0052=PATIENT', '-k', '0010,0010' ]) | |
1204 patientNames = re.findall('\(0010,0010\).*?\[(.*?)\]', i) | |
1205 self.assertEqual(2, len(patientNames)) | |
1206 self.assertTrue('Test Patient BG ' in patientNames) | |
1207 self.assertTrue('Anonymized' in patientNames) | |
1208 | |
1209 i = CallFindScu([ '-k', '0008,0052=SERIES', '-k', '0008,0021' ]) | |
1210 series = re.findall('\(0008,0021\).*?\[\s*(.*?)\s*\]', i) | |
1211 self.assertEqual(2, len(series)) | |
1212 self.assertTrue('20070208' in series) | |
1213 self.assertTrue('19980312' in series) | |
1214 | |
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1215 i = CallFindScu([ '-k', '0008,0052=SERIES', '-k', '0008,0021', '-k', 'Modality=MR\\XA' ]) |
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1216 series = re.findall('\(0008,0021\).*?\[\s*(.*?)\s*\]', i) |
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1217 self.assertEqual(1, len(series)) |
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1218 self.assertTrue('19980312' in series) |
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1219 |
13 | 1220 i = CallFindScu([ '-k', '0008,0052=SERIES', '-k', 'PatientName=Anonymized' ]) |
1221 series = re.findall('\(0010,0010\).*?\[\s*(.*?)\s*\]', i) | |
1222 self.assertEqual(1, len(series)) | |
1223 | |
1224 # Test the "CaseSentitivePN" flag (false by default) | |
1225 i = CallFindScu([ '-k', '0008,0052=SERIES', '-k', 'PatientName=anonymized' ]) | |
1226 series = re.findall('\(0010,0010\).*?\[\s*(.*?)\s*\]', i) | |
1227 self.assertEqual(1, len(series)) | |
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1228 |
70 | 1229 # Test range search (buggy if Orthanc <= 0.9.6) |
1230 i = CallFindScu([ '-k', '0008,0052=STUDY', '-k', 'StudyDate=19980312-' ]) | |
1231 studies = re.findall('\(0008,0020\).*?\[\s*(.*?)\s*\]', i) | |
1232 self.assertEqual(2, len(studies)) | |
1233 self.assertTrue('20070208' in studies) | |
1234 self.assertTrue('19980312' in studies) | |
1235 i = CallFindScu([ '-k', '0008,0052=STUDY', '-k', 'StudyDate=19980312-19980312' ]) | |
1236 studies = re.findall('\(0008,0020\).*?\[\s*(.*?)\s*\]', i) | |
1237 self.assertEqual(1, len(studies)) | |
1238 self.assertTrue('19980312' in studies) | |
1239 i = CallFindScu([ '-k', '0008,0052=STUDY', '-k', 'StudyDate=-19980312' ]) | |
1240 studies = re.findall('\(0008,0020\).*?\[\s*(.*?)\s*\]', i) | |
1241 self.assertEqual(1, len(studies)) | |
1242 self.assertTrue('19980312' in studies) | |
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1243 |
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1244 # Test that "Retrieve AE Title (0008,0054)" is present, which |
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1245 # was *not* the case in Orthanc <= 1.7.2 |
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1246 i = CallFindScu([ '-k', '0008,0052=INSTANCE' ]) |
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1247 instances = re.findall('\(0008,0054\).*?\[\s*(.*?)\s*\]', i) |
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1248 self.assertEqual(2, len(instances)) |
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1249 self.assertEqual('ORTHANC', instances[0].strip()) |
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1250 self.assertEqual('ORTHANC', instances[1].strip()) |
13 | 1251 |
1252 | |
191
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1253 def test_incoming_findscu_2(self): |
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1254 # This test fails if "LookupMode_DatabaseOnly" is used |
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1255 # (sequences are not available in this mode, and only main |
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1256 # DICOM tags are returned) |
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1257 UploadInstance(_REMOTE, 'Multiframe.dcm') |
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1258 UploadInstance(_REMOTE, 'ColorTestImageJ.dcm') |
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1259 |
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1260 # Test returning sequence values (only since Orthanc 0.9.5) |
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1261 i = CallFindScu([ '-k', '0008,0052=SERIES', '-k', '0008,2112' ]) # "ColorTestImageJ" has this sequence tag |
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1262 sequences = re.findall('\(0008,2112\)', i) |
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1263 self.assertEqual(1, len(sequences)) |
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1264 |
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1265 # Test returning a non-main DICOM tag, |
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1266 # "SecondaryCaptureDeviceID" (0018,1010), whose value is |
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1267 # "MEDPC" in "ColorTestImageJ.dcm" |
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1268 i = CallFindScu([ '-k', '0008,0052=SERIES', '-k', '0018,1010' ]) |
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1269 tags = re.findall('\(0018,1010\).*MEDPC', i) |
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1270 self.assertEqual(1, len(tags)) |
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1271 |
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1272 |
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1273 def test_incoming_findscu_3(self): |
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1274 # This test fails if "LookupMode_DatabaseOnly" or |
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1275 # "LookupMode_DiskOnAnswer" is used, as |
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1276 # "SecondaryCaptureDeviceID" (0018,1010) is not a main DICOM |
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1277 # tag, as thus a constraint cannot be applied to it |
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1278 UploadInstance(_REMOTE, 'ColorTestImageJ.dcm') |
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1279 |
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1280 i = CallFindScu([ '-k', '0008,0052=SERIES', '-k', '0018,1010=MEDPC' ]) |
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1281 sequences = re.findall('\(0018,1010\)', i) |
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1282 self.assertEqual(1, len(sequences)) |
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1283 |
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1284 |
13 | 1285 def test_incoming_movescu(self): |
1286 UploadInstance(_REMOTE, 'Multiframe.dcm') | |
137
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1287 |
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1288 # No matching patient, so no job is created |
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1289 self.assertEqual(0, len(DoGet(_LOCAL, '/patients'))) |
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1290 CallMoveScu([ '--patient', '-k', '0008,0052=PATIENT', '-k', 'PatientID=none' ]) |
13 | 1291 self.assertEqual(0, len(DoGet(_LOCAL, '/patients'))) |
137
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1292 |
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1293 # 1 Matching patient, track the job |
138 | 1294 self.assertTrue(MonitorJob(_REMOTE, lambda: CallMoveScu([ |
1295 '--patient', | |
1296 '-k', '0008,0052=PATIENT', | |
1297 '-k', 'PatientID=12345678' | |
1298 ]))) | |
13 | 1299 self.assertEqual(1, len(DoGet(_LOCAL, '/patients'))) |
1300 | |
1301 | |
1302 def test_findscu(self): | |
1303 i = UploadInstance(_REMOTE, 'DummyCT.dcm')['ID'] | |
1304 j = UploadInstance(_REMOTE, 'Issue22.dcm')['ID'] | |
1305 k = UploadInstance(_REMOTE, 'ColorTestImageJ.dcm')['ID'] | |
1306 DoPost(_REMOTE, '/modalities/orthanctest/store', str(i), 'text/plain') | |
1307 | |
1308 # Test the "find-patient" level | |
1309 p = DoPost(_REMOTE, '/modalities/orthanctest/find-patient', { }) | |
1310 self.assertEqual(1, len(p)) | |
1311 self.assertEqual('ozp00SjY2xG', p[0]['PatientID']) | |
1312 | |
1313 # Test wildcards constraints. The "LO" value representation | |
1314 # for PatientID is always case-sensitive, but the "PN" for | |
1315 # PatientName might depend on the implementation: | |
1316 # "GenerateConfigurationForTests.py" will force it to be case | |
1317 # insensitive (which was the default until Orthanc 0.8.6). | |
1318 p = DoPost(_REMOTE, '/modalities/orthanctest/find-patient', { 'PatientName' : 'K*' }) | |
1319 self.assertEqual(1, len(p)) | |
1320 | |
1321 p = DoPost(_REMOTE, '/modalities/orthanctest/find-patient', { 'PatientName' : 'k*' }) | |
1322 self.assertEqual(1, len(p)) | |
1323 | |
1324 p = DoPost(_REMOTE, '/modalities/orthanctest/find-patient', { 'PatientID' : 'ozp*' }) | |
1325 self.assertEqual(1, len(p)) | |
1326 | |
1327 p = DoPost(_REMOTE, '/modalities/orthanctest/find-patient', { 'PatientID' : 'o?p*' }) | |
1328 self.assertEqual(1, len(p)) | |
1329 | |
1330 p = DoPost(_REMOTE, '/modalities/orthanctest/find-patient', { 'PatientID' : '0?q*' }) | |
1331 self.assertEqual(0, len(p)) | |
1332 | |
1333 p = DoPost(_REMOTE, '/modalities/orthanctest/find-patient', { 'PatientName' : 'B*' }) | |
1334 self.assertEqual(0, len(p)) | |
1335 | |
1336 p = DoPost(_REMOTE, '/modalities/orthanctest/find-patient', { 'PatientName' : 'b*' }) | |
1337 self.assertEqual(0, len(p)) | |
1338 | |
1339 DoPost(_REMOTE, '/modalities/orthanctest/store', str(j), 'text/plain') | |
1340 DoPost(_REMOTE, '/modalities/orthanctest/store', str(k), 'text/plain') | |
1341 DoPost(_REMOTE, '/modalities/orthanctest/find-patient', { }) | |
1342 self.assertEqual(3, len(DoPost(_REMOTE, '/modalities/orthanctest/find-patient', { }))) | |
1343 | |
1344 p = DoPost(_REMOTE, '/modalities/orthanctest/find-patient', { 'PatientName' : 'A*' }) | |
1345 self.assertEqual(2, len(p)) | |
1346 | |
1347 # Test the "find-study" level. This is the instance "ColorTestImageJ.dcm" | |
1348 s = DoPost(_REMOTE, '/modalities/orthanctest/find-study', { 'PatientID' : 'B9uTHKOZ' }) | |
1349 self.assertEqual(1, len(s)) | |
1350 self.assertEqual('20070208', s[0]['StudyDate']) | |
1351 | |
1352 # Test range searches | |
1353 t = DoPost(_REMOTE, '/modalities/orthanctest/find-study', { 'PatientID' : 'B9uTHKOZ', | |
1354 'StudyDate' : '-20070101' }) | |
1355 self.assertEqual(0, len(t)) | |
1356 | |
1357 t = DoPost(_REMOTE, '/modalities/orthanctest/find-study', { 'PatientID' : 'B9uTHKOZ', | |
1358 'StudyDate' : '20090101-' }) | |
1359 self.assertEqual(0, len(t)) | |
1360 | |
1361 t = DoPost(_REMOTE, '/modalities/orthanctest/find-study', { 'PatientID' : 'B9uTHKOZ', | |
1362 'StudyDate' : '20070101-' }) | |
1363 self.assertEqual(1, len(t)) | |
1364 | |
1365 t = DoPost(_REMOTE, '/modalities/orthanctest/find-study', { 'PatientID' : 'B9uTHKOZ', | |
1366 'StudyDate' : '-20090101' }) | |
1367 self.assertEqual(1, len(t)) | |
1368 | |
1369 t = DoPost(_REMOTE, '/modalities/orthanctest/find-study', { 'PatientID' : 'B9uTHKOZ', | |
1370 'StudyDate' : '20070207-20070207' }) | |
1371 self.assertEqual(0, len(t)) | |
1372 | |
1373 t = DoPost(_REMOTE, '/modalities/orthanctest/find-study', { 'PatientID' : 'B9uTHKOZ', | |
1374 'StudyDate' : '20070208-20070208' }) | |
1375 self.assertEqual(1, len(t)) | |
1376 | |
1377 t = DoPost(_REMOTE, '/modalities/orthanctest/find-study', { 'PatientID' : 'B9uTHKOZ', | |
1378 'StudyDate' : '20070209-20070209' }) | |
1379 self.assertEqual(0, len(t)) | |
1380 | |
1381 # Test the ModalitiesInStudy tag | |
1382 t = DoPost(_REMOTE, '/modalities/orthanctest/find-study', { | |
1383 'PatientID' : 'B9uTHKOZ', | |
1384 'ModalitiesInStudy' : 'US' }) | |
1385 self.assertEqual(0, len(t)) | |
1386 | |
1387 t = DoPost(_REMOTE, '/modalities/orthanctest/find-study', { | |
1388 'PatientID' : 'B9uTHKOZ', | |
1389 'ModalitiesInStudy' : 'CT' }) | |
1390 self.assertEqual(1, len(t)) | |
1391 | |
1392 t = DoPost(_REMOTE, '/modalities/orthanctest/find-study', { | |
1393 'PatientID' : 'B9uTHKOZ', | |
1394 'ModalitiesInStudy' : 'US\\CT' }) | |
1395 self.assertEqual(1, len(t)) | |
1396 | |
1397 # Test the "find-series" level | |
1398 t = DoPost(_REMOTE, '/modalities/orthanctest/find-series', { | |
1399 'PatientID' : 'B9uTHKOZ', | |
1400 'StudyInstanceUID' : s[0]['StudyInstanceUID'] }) | |
1401 self.assertEqual(1, len(t)) | |
1402 | |
1403 # Test "\" separator | |
1404 t = DoPost(_REMOTE, '/modalities/orthanctest/find-series', { | |
1405 'PatientID' : 'B9uTHKOZ', | |
1406 'StudyInstanceUID' : s[0]['StudyInstanceUID'], | |
1407 'Modality' : 'MR\\CT\\US' }) | |
1408 self.assertEqual(1, len(t)) | |
1409 | |
1410 t = DoPost(_REMOTE, '/modalities/orthanctest/find-series', { | |
1411 'PatientID' : 'B9uTHKOZ', | |
1412 'StudyInstanceUID' : s[0]['StudyInstanceUID'], | |
1413 'Modality' : 'MR\\US' }) | |
1414 self.assertEqual(0, len(t)) | |
1415 | |
1416 | |
1417 def test_update_modalities(self): | |
1418 try: | |
1419 DoDelete(_REMOTE, '/modalities/toto') | |
1420 except: | |
1421 pass | |
1422 try: | |
1423 DoDelete(_REMOTE, '/modalities/tata') | |
1424 except: | |
1425 pass | |
1426 self.assertRaises(Exception, lambda: DoGet(_REMOTE, '/modalities/toto')) | |
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1427 self.assertRaises(Exception, lambda: DoDelete(_REMOTE, '/modalities/toto')) |
13 | 1428 DoPut(_REMOTE, '/modalities/toto', [ "STORESCP", "localhost", 2000 ]) |
116 | 1429 DoPut(_REMOTE, '/modalities/tata', [ "STORESCP", "localhost", 2000, 'MedInria' ]) # check backward compatiblity with obsolete manufacturer |
1430 DoDelete(_REMOTE, '/modalities/tata') | |
124 | 1431 DoPut(_REMOTE, '/modalities/tata', [ "STORESCP", "localhost", 2000, 'GenericNoUniversalWildcard' ]) |
121
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1432 DoDelete(_REMOTE, '/modalities/tata') |
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1433 DoPut(_REMOTE, '/modalities/tata', [ "STORESCP", "localhost", 2000, 'GenericNoWildcardInDates' ]) |
128 | 1434 modalitiesReadback = DoGet(_REMOTE, '/modalities?expand') |
182
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1435 self.assertEqual('STORESCP', modalitiesReadback['tata']['AET']) |
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1436 self.assertEqual('localhost', modalitiesReadback['tata']['Host']) |
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1437 self.assertEqual(2000, modalitiesReadback['tata']['Port']) |
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1438 self.assertEqual('GenericNoWildcardInDates', modalitiesReadback['tata']['Manufacturer']) |
116 | 1439 self.assertRaises(Exception, lambda: DoPut(_REMOTE, '/modalities/toto', [ "STORESCP", "localhost", 2000, 'InvalidManufacturerName' ])) |
13 | 1440 self.assertTrue('store' in DoGet(_REMOTE, '/modalities/toto')) |
1441 self.assertTrue('store' in DoGet(_REMOTE, '/modalities/tata')) | |
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1442 |
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1443 # New in Orthanc 1.8.1 |
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1444 self.assertTrue('configuration' in DoGet(_REMOTE, '/modalities/tata')) |
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1445 self.assertEqual(modalitiesReadback['tata'], DoGet(_REMOTE, '/modalities/tata/configuration')) |
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1446 |
13 | 1447 DoDelete(_REMOTE, '/modalities/toto') |
1448 DoDelete(_REMOTE, '/modalities/tata') | |
1449 self.assertRaises(Exception, lambda: DoGet(_REMOTE, '/modalities/toto')) | |
1450 self.assertRaises(Exception, lambda: DoGet(_REMOTE, '/modalities/tata')) | |
1451 | |
1452 | |
1453 def test_update_peers(self): | |
1454 # curl -X PUT http://localhost:8042/peers/toto -d '["http://localhost:8042/"]' -v | |
1455 try: | |
1456 DoDelete(_REMOTE, '/peers/toto') | |
1457 except: | |
1458 pass | |
1459 try: | |
1460 DoDelete(_REMOTE, '/peers/tata') | |
1461 except: | |
1462 pass | |
1463 self.assertRaises(Exception, lambda: DoGet(_REMOTE, '/peers/toto')) | |
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1464 self.assertRaises(Exception, lambda: DoDelete(_REMOTE, '/peers/toto')) |
13 | 1465 DoPut(_REMOTE, '/peers/toto', [ 'http://localhost:8042/' ]) |
214 | 1466 DoPut(_REMOTE, '/peers/tata', { 'Url': 'http://localhost:8042/', |
1467 'Username': 'user', | |
1468 'Password' : 'pass', | |
1469 'RemoteSelf' : 'self' }) | |
128 | 1470 self.assertTrue('tata' in DoGet(_REMOTE, '/peers')) |
1471 peersReadback = DoGet(_REMOTE, '/peers?expand') | |
1472 self.assertEqual('http://localhost:8042/', peersReadback['tata']['Url']) | |
1473 self.assertEqual('user', peersReadback['tata']['Username']) | |
214 | 1474 |
1475 if IsOrthancVersionAbove(_REMOTE, 1, 5, 4): | |
1476 self.assertEqual(None, peersReadback['tata']['Password']) # make sure no sensitive data is included | |
1477 self.assertFalse(peersReadback['tata']['Pkcs11']) # make sure no sensitive data is included | |
1478 self.assertEqual('self', peersReadback['tata']['RemoteSelf']) | |
1479 else: | |
1480 self.assertFalse('Password' in peersReadback['tata']) # make sure no sensitive data is included | |
1481 self.assertFalse('Pkcs11' in peersReadback['tata']) # make sure no sensitive data is included | |
1482 self.assertFalse('RemoteSelf' in peersReadback['tata']) | |
1483 | |
128 | 1484 self.assertFalse('CertificateFile' in peersReadback['tata']) # make sure no sensitive data is included |
1485 self.assertFalse('CertificateKeyFile' in peersReadback['tata']) # make sure no sensitive data is included | |
1486 self.assertFalse('CertificateKeyPassword' in peersReadback['tata']) # make sure no sensitive data is included | |
214 | 1487 |
13 | 1488 self.assertRaises(Exception, lambda: DoPut(_REMOTE, '/peers/toto', [ 'http://localhost:8042/', 'a' ])) |
1489 self.assertRaises(Exception, lambda: DoPut(_REMOTE, '/peers/toto', [ 'http://localhost:8042/', 'a', 'b', 'c' ])) | |
1490 self.assertTrue('store' in DoGet(_REMOTE, '/peers/toto')) | |
1491 self.assertTrue('store' in DoGet(_REMOTE, '/peers/tata')) | |
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1492 |
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1493 # New in Orthanc 1.8.1 |
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1494 self.assertTrue('configuration' in DoGet(_REMOTE, '/peers/tata')) |
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1495 self.assertEqual(peersReadback['tata'], DoGet(_REMOTE, '/peers/tata/configuration')) |
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1496 |
13 | 1497 DoDelete(_REMOTE, '/peers/toto') |
1498 DoDelete(_REMOTE, '/peers/tata') | |
1499 self.assertRaises(Exception, lambda: DoGet(_REMOTE, '/peers/toto')) | |
1500 self.assertRaises(Exception, lambda: DoGet(_REMOTE, '/peers/tata')) | |
1501 | |
1502 | |
1503 def test_mesterhazy_modification(self): | |
1504 # When I modify a series ( eg. curl | |
1505 # http://localhost:8042/series/uidhere/modify -X POST -d | |
1506 # '{"Replace":{"SeriesDate":"19990101"}}' ) the modified | |
1507 # series is added to a new Study, instead of the existing | |
1508 # Study. Fixed in Orthanc 0.7.5 | |
1509 | |
1510 u = UploadInstance(_REMOTE, 'DummyCT.dcm') | |
1511 study = 'b9c08539-26f93bde-c81ab0d7-bffaf2cb-a4d0bdd0' | |
1512 series = 'f2635388-f01d497a-15f7c06b-ad7dba06-c4c599fe' | |
1513 | |
1514 modified = DoPost(_REMOTE, '/series/%s/modify' % series, | |
1515 json.dumps({ "Replace" : { "SeriesDate" : "19990101" }})) | |
1516 | |
1517 self.assertEqual(study, DoGet(_REMOTE, '/series/%s' % modified['ID']) ['ParentStudy']) | |
1518 | |
1519 | |
1520 def test_create(self): | |
1521 i = DoPost(_REMOTE, '/tools/create-dicom', | |
1522 json.dumps({ | |
1523 'PatientName' : 'Jodogne', | |
1524 'Modality' : 'CT', | |
58 | 1525 'SOPClassUID' : '1.2.840.10008.5.1.4.1.1.1', |
13 | 1526 'PixelData' : 'data:image/png;base64,iVBORw0KGgoAAAANSUhEUgAAAAUAAAAFCAYAAACNbyblAAAAHElEQVQI12P4//8/w38GIAXDIBKE0DHxgljNBAAO9TXL0Y4OHwAAAABJRU5ErkJggg==' # red dot in RGBA |
1527 })) | |
1528 | |
1529 self.assertEqual('Jodogne', DoGet(_REMOTE, '/instances/%s/content/PatientName' % i['ID']).strip()) | |
1530 self.assertEqual('CT', DoGet(_REMOTE, '/instances/%s/content/Modality' % i['ID']).strip()) | |
1531 | |
1532 png = GetImage(_REMOTE, '/instances/%s/preview' % i['ID']) | |
1533 self.assertEqual((5, 5), png.size) | |
1534 | |
38 | 1535 j = DoGet(_REMOTE, i['Path']) |
1536 self.assertEqual('Instance', j['Type']) | |
1537 self.assertEqual(j['ID'], i['ID']) | |
1538 | |
13 | 1539 |
1540 def test_pilates(self): | |
1541 # "SCU failed error when accessing orthanc with osirix" by | |
1542 # Pilates Agentur (Mar 10, 2014 at 9:33 PM) | |
1543 i = UploadInstance(_REMOTE, 'PilatesArgenturGEUltrasoundOsiriX.dcm')['ID'] | |
1544 self.assertEqual(0, len(DoGet(_LOCAL, '/patients'))) | |
1545 j = DoPost(_REMOTE, '/modalities/orthanctest/store', str(i), 'text/plain') | |
1546 self.assertEqual(1, len(DoGet(_LOCAL, '/patients'))) | |
1547 | |
1548 | |
1549 def test_shared_tags(self): | |
1550 a = UploadInstance(_REMOTE, 'Knee/T1/IM-0001-0001.dcm')['ID'] | |
1551 b = UploadInstance(_REMOTE, 'Knee/T1/IM-0001-0002.dcm')['ID'] | |
1552 p = DoGet(_REMOTE, '/patients')[0] | |
1553 | |
1554 self.assertTrue('0010,0010' in DoGet(_REMOTE, '/patients/%s/shared-tags' % p)) | |
1555 self.assertTrue('PatientName' in DoGet(_REMOTE, '/patients/%s/shared-tags?simplify' % p)) | |
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1556 self.assertTrue('0010,0010' in DoGet(_REMOTE, '/patients/%s/shared-tags?short' % p)) |
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1557 |
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1558 self.assertEqual('KNEE', DoGet(_REMOTE, '/patients/%s/shared-tags' % p)['0010,0010']['Value']) |
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1559 self.assertEqual('KNEE', DoGet(_REMOTE, '/patients/%s/shared-tags?simplify' % p)['PatientName']) |
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1560 self.assertEqual('KNEE', DoGet(_REMOTE, '/patients/%s/shared-tags?short' % p)['0010,0010']) |
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1561 |
13 | 1562 self.assertTrue('0008,1030' in DoGet(_REMOTE, '/patients/%s/shared-tags' % p)) |
1563 self.assertTrue('StudyDescription' in DoGet(_REMOTE, '/patients/%s/shared-tags?simplify' % p)) | |
1564 self.assertTrue('0008,103e' in DoGet(_REMOTE, '/patients/%s/shared-tags' % p)) | |
1565 self.assertTrue('SeriesDescription' in DoGet(_REMOTE, '/patients/%s/shared-tags?simplify' % p)) | |
1566 self.assertFalse('0008,0018' in DoGet(_REMOTE, '/patients/%s/shared-tags' % p)) | |
1567 self.assertFalse('SOPInstanceUID' in DoGet(_REMOTE, '/patients/%s/shared-tags?simplify' % p)) | |
1568 | |
1569 self.assertTrue('0008,0018' in DoGet(_REMOTE, '/instances/%s/tags' % a)) | |
1570 self.assertTrue('SOPInstanceUID' in DoGet(_REMOTE, '/instances/%s/tags?simplify' % a)) | |
1571 | |
1572 | |
1573 def test_modules(self): | |
1574 a = UploadInstance(_REMOTE, 'Knee/T1/IM-0001-0001.dcm')['ID'] | |
1575 p = DoGet(_REMOTE, '/patients')[0] | |
1576 s = DoGet(_REMOTE, '/studies')[0] | |
1577 t = DoGet(_REMOTE, '/series')[0] | |
1578 | |
1579 self.assertTrue('0010,0010' in DoGet(_REMOTE, '/patients/%s/module' % p)) | |
1580 self.assertTrue('PatientName' in DoGet(_REMOTE, '/patients/%s/module?simplify' % p)) | |
1581 self.assertTrue('0010,0010' in DoGet(_REMOTE, '/studies/%s/module-patient' % p)) | |
1582 self.assertTrue('PatientName' in DoGet(_REMOTE, '/studies/%s/module-patient?simplify' % p)) | |
1583 self.assertTrue('0008,1030' in DoGet(_REMOTE, '/studies/%s/module' % s)) | |
1584 self.assertTrue('StudyDescription' in DoGet(_REMOTE, '/studies/%s/module?simplify' % s)) | |
1585 self.assertTrue('0008,103e' in DoGet(_REMOTE, '/series/%s/module' % p)) | |
1586 self.assertTrue('SeriesDescription' in DoGet(_REMOTE, '/series/%s/module?simplify' % p)) | |
1587 self.assertTrue('0008,0018' in DoGet(_REMOTE, '/instances/%s/module' % a)) | |
1588 self.assertTrue('SOPInstanceUID' in DoGet(_REMOTE, '/instances/%s/module?simplify' % a)) | |
1589 | |
1590 | |
1591 def test_auto_directory(self): | |
1592 a = UploadInstance(_REMOTE, 'Knee/T1/IM-0001-0001.dcm')['ID'] | |
1593 self.assertTrue('now' in DoGet(_REMOTE, '/tools')) | |
1594 self.assertTrue('dicom-conformance' in DoGet(_REMOTE, '/tools')) | |
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1595 self.assertTrue('invalidate-tags' in DoGet(_REMOTE, '/tools')) |
13 | 1596 self.assertTrue(len(DoGet(_REMOTE, '/tools/dicom-conformance')) > 1000) |
1597 self.assertTrue('orthanctest' in DoGet(_REMOTE, '/modalities')) | |
1598 self.assertTrue('echo' in DoGet(_REMOTE, '/modalities/orthanctest')) | |
1599 self.assertTrue('find' in DoGet(_REMOTE, '/modalities/orthanctest')) | |
1600 self.assertTrue('find-instance' in DoGet(_REMOTE, '/modalities/orthanctest')) | |
1601 self.assertTrue('find-patient' in DoGet(_REMOTE, '/modalities/orthanctest')) | |
1602 self.assertTrue('find-series' in DoGet(_REMOTE, '/modalities/orthanctest')) | |
1603 self.assertTrue('find-study' in DoGet(_REMOTE, '/modalities/orthanctest')) | |
1604 self.assertTrue('store' in DoGet(_REMOTE, '/modalities/orthanctest')) | |
1605 self.assertTrue('store' in DoGet(_REMOTE, '/peers/peer')) | |
1606 self.assertTrue('matlab' in DoGet(_REMOTE, '/instances/%s/frames/0' % a)) | |
79 | 1607 self.assertTrue('raw' in DoGet(_REMOTE, '/instances/%s/frames/0' % a)) |
13 | 1608 self.assertRaises(Exception, lambda: DoGet(_REMOTE, '/tools/nope')) |
28 | 1609 self.assertRaises(Exception, lambda: DoGet(_REMOTE, '/nope')) |
1610 self.assertRaises(Exception, lambda: DoGet(_REMOTE, '/nope/nope.html')) | |
1611 self.assertEqual(404, DoGetRaw(_REMOTE, '/nope')[0].status) | |
1612 self.assertEqual(404, DoGetRaw(_REMOTE, '/nope/nope.html')[0].status) | |
13 | 1613 |
1614 | |
1615 def test_echo(self): | |
1616 DoPost(_REMOTE, '/modalities/orthanctest/echo') | |
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1617 DoPost(_REMOTE, '/modalities/orthanctest/echo', '{}') |
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1618 |
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1619 # The following was not working in Orthanc 1.7.0 -> 1.8.1 |
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1620 DoPost(_REMOTE, '/modalities/orthanctest/echo', '') |
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1621 self.assertRaises(Exception, lambda: DoGet(_REMOTE, '/modalities/nope/echo')) |
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1622 |
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1623 # New in Orthanc 1.8.1 |
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1624 DoPost(_REMOTE, '/tools/dicom-echo', [ |
355 | 1625 _REMOTE['DicomAet'], _REMOTE['Server'], _REMOTE['DicomPort'] ]) |
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1626 DoPost(_REMOTE, '/tools/dicom-echo', DoGet(_REMOTE, '/modalities/orthanctest/configuration')) |
13 | 1627 |
353 | 1628 # Use the 'CheckFind' new option in Orthanc 1.8.1 |
1629 DoPost(_REMOTE, '/modalities/self/echo', { 'CheckFind' : True }) | |
1630 DoPost(_REMOTE, '/tools/dicom-echo', { | |
1631 'AET' : _REMOTE['DicomAet'], | |
1632 'Host' : _REMOTE['Server'], | |
1633 'Port' : _REMOTE['DicomPort'], | |
1634 'CheckFind' : True | |
1635 }) | |
1636 | |
13 | 1637 |
1638 def test_xml(self): | |
1639 json = DoGet(_REMOTE, '/tools', headers = { 'accept' : 'application/json' }) | |
1640 xml = minidom.parseString(DoGet(_REMOTE, '/tools', headers = { 'accept' : 'application/xml' })) | |
1641 items = xml.getElementsByTagName('root')[0].getElementsByTagName('item') | |
1642 self.assertEqual(len(items), len(json)) | |
1643 | |
1644 self.assertTrue('dicom-conformance' in json) | |
1645 | |
1646 ok = False | |
1647 for i in items: | |
1648 if i.childNodes[0].data == 'dicom-conformance': | |
1649 ok = True | |
1650 self.assertTrue(ok) | |
1651 | |
1652 | |
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1653 def test_googlecode_issue_16(self): |
13 | 1654 i = UploadInstance(_REMOTE, 'Issue16.dcm')['ID'] |
1655 t = DoGet(_REMOTE, '/instances/%s/tags?simplify' % i)['FrameIncrementPointer'] | |
1656 self.assertEqual('0018,1063', t) | |
1657 | |
1658 | |
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1659 def test_googlecode_issue_22(self): |
13 | 1660 s = UploadInstance(_REMOTE, 'Issue22.dcm')['ID'] |
1661 a = [ | |
1662 "f804691f62197040438f4627c6b994f1", # Frame 0 | |
1663 "c69eee9a51eea3e8611e82e578897254", | |
1664 "315666be83e2d0111c77bc0996d84901", | |
1665 "3e27aa959d911172c48a1436443c72b1", | |
1666 "958642c9e7e9d232d3869faff546058c", | |
1667 "5e7ea8e3e4230cae707d143481355c59", | |
1668 "eda37f83558d858a596175aed8b2ad47", | |
1669 "486713bd2895c4ecbe0e97715ac7f80a", | |
1670 "091ef729eb169e67da8a0faa9631f9a8", | |
1671 "5aa2b8c7ffe0a483efaa8e12417686ca", | |
1672 "e2f39e85896fe58876654b94cd0b5013", | |
1673 "6fd2129e4950abbe1be053bc814d5da8", | |
1674 "c3331a8ba7a757f3d423735ab7fa81f9", | |
1675 "746f808582156734dd6b6fdfd3a0b72c", | |
1676 "8075ea2b227a70c60ea6b7b75a6bb190", | |
1677 "806b8b3e300c615099c11a5ec23465aa", | |
1678 "7c836aa298ba6eef96434579af631a11", | |
1679 "a0357dc9f4f72d73a885c33d7c287446", | |
1680 "f25ba3be1cc7d7fad95706adc199ea7d", | |
1681 "8b114c526b8cbed6cad8a3248b7b480c", | |
1682 "44e6670f127e612a2b4aa60a0d207698", | |
1683 "b8945f90fe02facf2ace24ca1ecbe0a5", | |
1684 "95c796c2fa8f59018b15cf2987b1f79b", | |
1685 "ce0a51ab30224205b44920221dc27351", # Frame 23 | |
1686 ] | |
1687 | |
1688 self.assertEqual(24, len(DoGet(_REMOTE, '/instances/%s/frames' % s))) | |
1689 self.assertRaises(Exception, lambda: DoGet(_REMOTE, '/instances/%s/frames/24/preview' % s)) | |
1690 | |
1691 for i in range(len(a)): | |
1692 self.assertEqual(a[i], ComputeMD5(DoGet(_REMOTE, '/instances/%s/frames/%d/preview' % (s, i)))) | |
1693 | |
1694 | |
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1695 def test_googlecode_issue_19(self): |
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1696 # This is an image with "YBR_FULL" photometric interpretation, it is not supported by Orthanc |
13 | 1697 # gdcmconv -i /home/jodogne/DICOM/GdcmDatabase/US_DataSet/HDI5000_US/3EAF5E01 -w -o Issue19.dcm |
1698 | |
1699 a = UploadInstance(_REMOTE, 'Issue19.dcm')['ID'] | |
304 | 1700 if not HasGdcmPlugin(_REMOTE): |
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1701 self.assertRaises(Exception, lambda: DoGet(_REMOTE, '/instances/941ad3c8-05d05b88-560459f9-0eae0e20-6cddd533/preview')) |
13 | 1702 |
1703 | |
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1704 def test_googlecode_issue_37(self): |
13 | 1705 # Same test for issues 35 and 37. Fixed in Orthanc 0.9.1 |
1706 u = UploadInstance(_REMOTE, 'Beaufix/IM-0001-0001.dcm')['ID'] | |
1707 | |
1708 a = DoPost(_REMOTE, '/tools/find', { 'Level' : 'Series', | |
1709 'CaseSensitive' : True, | |
1710 'Query' : { 'StationName' : 'SMR4-MP3' }}) | |
1711 self.assertEqual(1, len(a)) | |
14 | 1712 |
1713 | |
1714 def test_rest_find(self): | |
1715 # Upload 8 instances | |
1716 for i in range(2): | |
1717 UploadInstance(_REMOTE, 'Brainix/Flair/IM-0001-000%d.dcm' % (i + 1)) | |
1718 UploadInstance(_REMOTE, 'Brainix/Epi/IM-0001-000%d.dcm' % (i + 1)) | |
1719 UploadInstance(_REMOTE, 'Knee/T1/IM-0001-000%d.dcm' % (i + 1)) | |
1720 UploadInstance(_REMOTE, 'Knee/T2/IM-0001-000%d.dcm' % (i + 1)) | |
1721 | |
1722 a = DoPost(_REMOTE, '/tools/find', { 'Level' : 'Patient', | |
1723 'CaseSensitive' : False, | |
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1724 'Query' : { 'PatientName' : 'BRAINIX' }}) |
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1725 self.assertEqual(1, len(a)) |
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1726 |
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1727 a = DoPost(_REMOTE, '/tools/find', { 'Level' : 'Patient', |
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1728 'CaseSensitive' : False, |
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1729 'Query' : { 'PatientName' : 'BRAINIX\\KNEE\\NOPE' }}) |
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1730 self.assertEqual(2, len(a)) |
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1731 |
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1732 a = DoPost(_REMOTE, '/tools/find', { 'Level' : 'Patient', |
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1733 'CaseSensitive' : False, |
14 | 1734 'Query' : { 'PatientName' : '*n*' }}) |
1735 self.assertEqual(2, len(a)) | |
1736 | |
1737 a = DoPost(_REMOTE, '/tools/find', { 'Level' : 'Patient', | |
1738 'CaseSensitive' : True, | |
1739 'Query' : { 'PatientName' : '*n*' }}) | |
1740 self.assertEqual(0, len(a)) | |
1741 | |
1742 a = DoPost(_REMOTE, '/tools/find', { 'Expand' : True, | |
1743 'Level' : 'Patient', | |
1744 'CaseSensitive' : False, | |
1745 'Query' : { 'PatientName' : '*ne*' }}) | |
1746 self.assertEqual(1, len(a)) | |
1747 self.assertEqual('20080822', a[0]['MainDicomTags']['PatientBirthDate']) | |
1748 | |
1749 a = DoPost(_REMOTE, '/tools/find', { 'Level' : 'Patient', | |
1750 'CaseSensitive' : True, | |
1751 'Query' : { 'PatientName' : '*ne*' }}) | |
1752 self.assertEqual(0, len(a)) | |
1753 | |
1754 a = DoPost(_REMOTE, '/tools/find', { 'Level' : 'Study', | |
1755 'CaseSensitive' : True, | |
1756 'Query' : { 'PatientName' : '*NE*' }}) | |
1757 self.assertEqual(1, len(a)) | |
1758 | |
1759 a = DoPost(_REMOTE, '/tools/find', { 'Level' : 'Series', | |
1760 'CaseSensitive' : True, | |
1761 'Query' : { 'PatientName' : '*NE*' }}) | |
1762 self.assertEqual(2, len(a)) | |
1763 | |
1764 a = DoPost(_REMOTE, '/tools/find', { 'Level' : 'Instance', | |
1765 'CaseSensitive' : True, | |
1766 'Query' : { 'PatientName' : '*NE*' }}) | |
1767 self.assertEqual(4, len(a)) | |
1768 | |
1769 a = DoPost(_REMOTE, '/tools/find', { 'Level' : 'Patient', 'Query' : { }}) | |
1770 self.assertEqual(2, len(a)) | |
1771 | |
1772 a = DoPost(_REMOTE, '/tools/find', { 'Level' : 'Study', 'Query' : { }}) | |
1773 self.assertEqual(2, len(a)) | |
1774 | |
1775 a = DoPost(_REMOTE, '/tools/find', { 'Level' : 'Series', 'Query' : { }}) | |
1776 self.assertEqual(4, len(a)) | |
1777 | |
1778 a = DoPost(_REMOTE, '/tools/find', { 'Level' : 'Instance', 'Query' : { }}) | |
1779 self.assertEqual(8, len(a)) | |
1780 | |
194
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1781 a = DoPost(_REMOTE, '/tools/find', { 'Level' : 'Study', |
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1782 'Expand' : True, |
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1783 'Query' : { 'StudyDate' : '20061201-20061201' }}) |
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1784 self.assertEqual(1, len(a)) |
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1785 self.assertEqual('BRAINIX', a[0]['PatientMainDicomTags']['PatientName']) |
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1786 |
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1787 a = DoPost(_REMOTE, '/tools/find', { 'Level' : 'Study', |
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1788 'Expand' : True, |
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1789 'Query' : { 'StudyDate' : '20061201-20091201' }}) |
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1790 self.assertEqual(2, len(a)) |
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1791 for i in range(2): |
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1792 self.assertTrue(a[i]['PatientMainDicomTags']['PatientName'] in ['BRAINIX', 'KNEE']) |
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1793 |
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1794 a = DoPost(_REMOTE, '/tools/find', { 'Level' : 'Study', |
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1795 'Query' : { 'StudyDate' : '20061202-20061202' }}) |
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1796 self.assertEqual(0, len(a)) |
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1797 |
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1798 a = DoPost(_REMOTE, '/tools/find', { 'Level' : 'Study', |
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1799 'Expand' : True, |
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1800 'Query' : { 'StudyDate' : '-20061201' }}) |
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1801 self.assertEqual(1, len(a)) |
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1802 self.assertEqual('BRAINIX', a[0]['PatientMainDicomTags']['PatientName']) |
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1803 |
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1804 a = DoPost(_REMOTE, '/tools/find', { 'Level' : 'Study', |
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1805 'Expand' : True, |
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1806 'Query' : { 'StudyDate' : '-20051201' }}) |
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1807 self.assertEqual(0, len(a)) |
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1808 |
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1809 a = DoPost(_REMOTE, '/tools/find', { 'Level' : 'Study', |
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1810 'Expand' : True, |
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1811 'Query' : { 'StudyDate' : '20061201-' }}) |
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1812 self.assertEqual(2, len(a)) |
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1813 for i in range(2): |
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1814 self.assertTrue(a[i]['PatientMainDicomTags']['PatientName'] in ['BRAINIX', 'KNEE']) |
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1815 |
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1816 a = DoPost(_REMOTE, '/tools/find', { 'Level' : 'Study', |
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1817 'Expand' : True, |
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1818 'Query' : { 'StudyDate' : '20061202-' }}) |
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1819 self.assertEqual(1, len(a)) |
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1820 self.assertEqual('KNEE', a[0]['PatientMainDicomTags']['PatientName']) |
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1821 |
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1822 a = DoPost(_REMOTE, '/tools/find', { 'Level' : 'Study', |
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1823 'Expand' : True, |
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1824 'Query' : { 'StudyDate' : '20080819-' }}) |
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1825 self.assertEqual(1, len(a)) |
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1826 self.assertEqual('KNEE', a[0]['PatientMainDicomTags']['PatientName']) |
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1827 |
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1828 a = DoPost(_REMOTE, '/tools/find', { 'Level' : 'Study', |
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1829 'Expand' : True, |
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1830 'Query' : { 'StudyDate' : '20080820-' }}) |
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1831 self.assertEqual(0, len(a)) |
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1832 |
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1833 |
14 | 1834 |
1835 def test_rest_query_retrieve(self): | |
1836 self.assertEqual(0, len(DoGet(_REMOTE, '/patients'))) | |
1837 | |
1838 # Upload 8 instances | |
1839 for i in range(2): | |
1840 UploadInstance(_REMOTE, 'Brainix/Flair/IM-0001-000%d.dcm' % (i + 1)) | |
1841 UploadInstance(_REMOTE, 'Brainix/Epi/IM-0001-000%d.dcm' % (i + 1)) | |
1842 UploadInstance(_REMOTE, 'Knee/T1/IM-0001-000%d.dcm' % (i + 1)) | |
1843 UploadInstance(_REMOTE, 'Knee/T2/IM-0001-000%d.dcm' % (i + 1)) | |
1844 | |
1845 self.assertEqual(2, len(DoGet(_REMOTE, '/patients'))) | |
1846 for p in DoGet(_REMOTE, '/patients'): | |
1847 DoPost(_REMOTE, '/modalities/orthanctest/store', p) | |
1848 DoDelete(_REMOTE, '/patients/%s' % p) | |
1849 | |
1850 for q in DoGet(_REMOTE, '/queries'): | |
1851 DoDelete(_REMOTE, '/queries/%s' % q) | |
1852 | |
1853 self.assertEqual(0, len(DoGet(_REMOTE, '/patients'))) | |
1854 self.assertEqual(0, len(DoGet(_REMOTE, '/queries'))) | |
1855 a = DoPost(_REMOTE, '/modalities/orthanctest/query', { 'Level' : 'Series', | |
27 | 1856 'Query' : { |
1857 'PatientName' : '*NE*', | |
1858 'StudyDate' : '*', | |
1859 }})['ID'] | |
14 | 1860 self.assertEqual(1, len(DoGet(_REMOTE, '/queries'))) |
1861 | |
1862 b = DoGet(_REMOTE, '/queries/%s' % a) | |
1863 self.assertTrue('answers' in b) | |
1864 self.assertTrue('level' in b) | |
1865 self.assertTrue('modality' in b) | |
1866 self.assertTrue('query' in b) | |
1867 self.assertTrue('retrieve' in b) | |
1868 self.assertEqual('Series', DoGet(_REMOTE, '/queries/%s/level' % a)) | |
1869 self.assertEqual('orthanctest', DoGet(_REMOTE, '/queries/%s/modality' % a)) | |
1870 | |
1871 q = DoGet(_REMOTE, '/queries/%s/query?simplify' % a) | |
27 | 1872 self.assertEqual(2, len(q)) |
14 | 1873 self.assertTrue('PatientName' in q) |
27 | 1874 self.assertTrue('StudyDate' in q) |
14 | 1875 self.assertEqual('*NE*', q['PatientName']) |
27 | 1876 self.assertEqual('*', q['StudyDate']) |
14 | 1877 |
1878 self.assertEqual(2, len(DoGet(_REMOTE, '/queries/%s/answers' % a))) | |
1879 | |
1880 s = DoGet(_REMOTE, '/queries/%s/answers/0' % a) | |
1881 self.assertTrue('content' in s) | |
1882 self.assertTrue('retrieve' in s) | |
1883 | |
1884 s = DoGet(_REMOTE, '/queries/%s/answers/0/content?simplify' % a) | |
1885 self.assertEqual('887', s['PatientID']) | |
1886 self.assertEqual('2.16.840.1.113669.632.20.121711.10000160881', s['StudyInstanceUID']) | |
1887 | |
1888 self.assertEqual(0, len(DoGet(_REMOTE, '/patients'))) | |
1889 DoPost(_REMOTE, '/queries/%s/answers/0/retrieve' % a, 'ORTHANC') | |
1890 self.assertEqual(1, len(DoGet(_REMOTE, '/patients'))) | |
1891 self.assertEqual(1, len(DoGet(_REMOTE, '/studies'))) | |
1892 self.assertEqual(1, len(DoGet(_REMOTE, '/series'))) | |
1893 self.assertEqual(2, len(DoGet(_REMOTE, '/instances'))) | |
1894 | |
112 | 1895 DoPost(_REMOTE, '/queries/%s/answers/1/retrieve' % a, 'ORTHANC', 'application/json') # make sure the issue #36 is fixed (query/retrieve Rest API: /retrieve route shall accept application/json content type) |
14 | 1896 self.assertEqual(1, len(DoGet(_REMOTE, '/patients'))) |
1897 self.assertEqual(1, len(DoGet(_REMOTE, '/studies'))) | |
1898 self.assertEqual(2, len(DoGet(_REMOTE, '/series'))) | |
1899 self.assertEqual(4, len(DoGet(_REMOTE, '/instances'))) | |
1900 | |
186
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1901 # New in Orthanc 1.4.3 |
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1902 s = DoGet(_REMOTE, '/queries/%s/answers?expand&simplify' % a) |
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1903 self.assertEqual(2, len(s)) |
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1904 for i in range(2): |
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1905 self.assertEqual('SERIES', s[i]['QueryRetrieveLevel']) |
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1906 self.assertEqual('887', s[i]['PatientID']) |
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1907 self.assertEqual('2.16.840.1.113669.632.20.121711.10000160881', s[i]['StudyInstanceUID']) |
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1908 |
14 | 1909 DoDelete(_REMOTE, '/queries/%s' % a) |
1910 self.assertEqual(0, len(DoGet(_REMOTE, '/queries'))) | |
1911 | |
1912 | |
1913 def test_parent(self): | |
1914 u = UploadInstance(_REMOTE, 'DummyCT.dcm')['ID'] | |
1915 patient = '6816cb19-844d5aee-85245eba-28e841e6-2414fae2' | |
1916 study = 'b9c08539-26f93bde-c81ab0d7-bffaf2cb-a4d0bdd0' | |
1917 series = 'f2635388-f01d497a-15f7c06b-ad7dba06-c4c599fe' | |
1918 instance = '66a662ce-7430e543-bad44d47-0dc5a943-ec7a538d' | |
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1919 self.assertEqual(instance, u) |
14 | 1920 |
1921 a = DoGet(_REMOTE, '/studies/%s/patient' % study) | |
1922 self.assertEqual('Patient', a['Type']) | |
1923 self.assertEqual(patient, a['ID']) | |
1924 | |
1925 a = DoGet(_REMOTE, '/series/%s/patient' % series) | |
1926 self.assertEqual('Patient', a['Type']) | |
1927 self.assertEqual(patient, a['ID']) | |
1928 | |
1929 a = DoGet(_REMOTE, '/series/%s/study' % series) | |
1930 self.assertEqual('Study', a['Type']) | |
1931 self.assertEqual(study, a['ID']) | |
1932 | |
1933 a = DoGet(_REMOTE, '/instances/%s/patient' % instance) | |
1934 self.assertEqual('Patient', a['Type']) | |
1935 self.assertEqual(patient, a['ID']) | |
1936 | |
1937 a = DoGet(_REMOTE, '/instances/%s/study' % instance) | |
1938 self.assertEqual('Study', a['Type']) | |
1939 self.assertEqual(study, a['ID']) | |
1940 | |
1941 a = DoGet(_REMOTE, '/instances/%s/series' % instance) | |
1942 self.assertEqual('Series', a['Type']) | |
1943 self.assertEqual(series, a['ID']) | |
1944 | |
1945 | |
1946 def test_shanon(self): | |
1947 def Anonymize(instance, replacements = {}): | |
119 | 1948 return DoPost(_REMOTE, '/instances/%s/anonymize' % instance, { |
1949 'Replace' : replacements, | |
1950 'Force' : True, | |
1951 }, 'application/json') | |
14 | 1952 |
1953 self.assertEqual(0, len(DoGet(_REMOTE, '/instances'))) | |
1954 u = UploadInstance(_REMOTE, 'DummyCT.dcm')['ID'] | |
1955 self.assertEqual(1, len(DoGet(_REMOTE, '/instances'))) | |
1956 | |
1957 tags = [ 'PatientID', 'StudyInstanceUID', 'SeriesInstanceUID', 'SOPInstanceUID', 'DeidentificationMethod' ] | |
1958 ids = [ 'ozp00SjY2xG', | |
1959 '1.2.840.113619.2.176.2025.1499492.7391.1171285944.390', | |
1960 '1.2.840.113619.2.176.2025.1499492.7391.1171285944.394', | |
1961 '1.2.840.113619.2.176.2025.1499492.7040.1171286242.109' ] | |
1962 | |
1963 a = ExtractDicomTags(Anonymize(u), tags) | |
1964 for i in range(4): | |
1965 self.assertNotEqual(ids[i], a[i]) | |
1966 self.assertTrue(a[4].startswith('Orthanc')) | |
1967 | |
1968 a = ExtractDicomTags(Anonymize(u, { 'PatientName' : 'toto' }), tags) | |
1969 for i in range(4): | |
1970 self.assertNotEqual(ids[i], a[i]) | |
1971 self.assertFalse(a[4].startswith('Orthanc')) | |
1972 | |
1973 a = ExtractDicomTags(Anonymize(u, { 'SOPInstanceUID' : 'instance' }), tags) | |
1974 self.assertEqual('instance', a[3]) | |
1975 self.assertFalse(a[4].startswith('Orthanc')) | |
1976 | |
1977 a = ExtractDicomTags(Anonymize(u, { 'SeriesInstanceUID' : 'series' }), tags) | |
1978 self.assertEqual('series', a[2]) | |
1979 self.assertFalse(a[4].startswith('Orthanc')) | |
1980 | |
1981 a = ExtractDicomTags(Anonymize(u, { 'StudyInstanceUID' : 'study' }), tags) | |
1982 self.assertEqual('study', a[1]) | |
1983 self.assertFalse(a[4].startswith('Orthanc')) | |
1984 | |
1985 a = ExtractDicomTags(Anonymize(u, { 'PatientID' : 'patient' }), tags) | |
1986 self.assertEqual('patient', a[0]) | |
1987 self.assertFalse(a[4].startswith('Orthanc')) | |
1988 | |
1989 a = ExtractDicomTags(Anonymize(u, { 'PatientID' : 'patient', | |
1990 'StudyInstanceUID' : 'study', | |
1991 'SeriesInstanceUID' : 'series', | |
1992 'SOPInstanceUID' : 'instance' }), tags) | |
1993 self.assertEqual('patient', a[0]) | |
1994 self.assertFalse(a[4].startswith('Orthanc')) | |
1995 | |
1996 self.assertEqual(1, len(DoGet(_REMOTE, '/instances'))) | |
1997 | |
1998 | |
1999 def test_shanon_2(self): | |
2000 def Modify(instance, replacements = {}): | |
119 | 2001 return DoPost(_REMOTE, '/instances/%s/modify' % instance, { |
2002 'Replace' : replacements, | |
2003 'Force': True, | |
2004 }, 'application/json') | |
14 | 2005 |
2006 self.assertEqual(0, len(DoGet(_REMOTE, '/instances'))) | |
2007 u = UploadInstance(_REMOTE, 'DummyCT.dcm')['ID'] | |
2008 self.assertEqual(1, len(DoGet(_REMOTE, '/instances'))) | |
2009 | |
2010 tags = [ 'PatientID', 'StudyInstanceUID', 'SeriesInstanceUID', 'SOPInstanceUID', 'DeidentificationMethod' ] | |
2011 ids = [ 'ozp00SjY2xG', | |
2012 '1.2.840.113619.2.176.2025.1499492.7391.1171285944.390', | |
2013 '1.2.840.113619.2.176.2025.1499492.7391.1171285944.394', | |
2014 '1.2.840.113619.2.176.2025.1499492.7040.1171286242.109' ] | |
2015 | |
2016 a = ExtractDicomTags(Modify(u), tags) | |
2017 self.assertEqual(ids[0], a[0]) | |
2018 self.assertEqual(ids[1], a[1]) | |
2019 self.assertEqual(ids[2], a[2]) | |
2020 self.assertNotEqual(ids[3], a[3]) | |
2021 self.assertEqual(0, len(a[4])) | |
2022 | |
2023 a = ExtractDicomTags(Modify(u, { 'SOPInstanceUID' : 'instance' }), tags) | |
2024 self.assertEqual(ids[0], a[0]) | |
2025 self.assertEqual(ids[1], a[1]) | |
2026 self.assertEqual(ids[2], a[2]) | |
2027 self.assertEqual('instance', a[3]) | |
2028 | |
2029 a = ExtractDicomTags(Modify(u, { 'SeriesInstanceUID' : 'series' }), tags) | |
2030 self.assertEqual(ids[0], a[0]) | |
2031 self.assertEqual(ids[1], a[1]) | |
2032 self.assertEqual('series', a[2]) | |
2033 self.assertNotEqual(ids[3], a[3]) | |
2034 | |
2035 a = ExtractDicomTags(Modify(u, { 'StudyInstanceUID' : 'study' }), tags) | |
2036 self.assertEqual(ids[0], a[0]) | |
2037 self.assertEqual('study', a[1]) | |
2038 self.assertNotEqual(ids[2], a[2]) | |
2039 self.assertNotEqual(ids[3], a[3]) | |
2040 | |
2041 a = ExtractDicomTags(Modify(u, { 'PatientID' : 'patient' }), tags) | |
2042 self.assertEqual('patient', a[0]) | |
2043 self.assertNotEqual(ids[1], a[1]) | |
2044 self.assertNotEqual(ids[2], a[2]) | |
2045 self.assertNotEqual(ids[3], a[3]) | |
2046 | |
2047 a = ExtractDicomTags(Modify(u, { 'PatientID' : 'patient', | |
2048 'StudyInstanceUID' : 'study', | |
2049 'SeriesInstanceUID' : 'series', | |
2050 'SOPInstanceUID' : 'instance' }), tags) | |
2051 self.assertEqual('patient', a[0]) | |
2052 self.assertEqual('study', a[1]) | |
2053 self.assertEqual('series', a[2]) | |
2054 self.assertEqual('instance', a[3]) | |
2055 | |
2056 self.assertEqual(1, len(DoGet(_REMOTE, '/instances'))) | |
2057 | |
2058 | |
2059 def test_instances_tags(self): | |
2060 a = UploadInstance(_REMOTE, 'Knee/T1/IM-0001-0001.dcm')['ID'] | |
2061 b = UploadInstance(_REMOTE, 'Knee/T2/IM-0001-0001.dcm')['ID'] | |
2062 #a = UploadInstance(_REMOTE, 'Cardiac/MR.X.1.2.276.0.7230010.3.1.4.2831157719.2256.1336386937.676343')['ID'] | |
2063 #b = UploadInstance(_REMOTE, 'Cardiac/MR.X.1.2.276.0.7230010.3.1.4.2831157719.2256.1336386925.676329')['ID'] | |
2064 | |
2065 i = DoGet(_REMOTE, '/patients/%s/instances-tags?simplify' % DoGet(_REMOTE, '/patients')[0]) | |
2066 self.assertEqual(2, len(i)) | |
2067 self.assertEqual('887', i[i.keys()[0]]['PatientID']) | |
2068 self.assertEqual('887', i[i.keys()[1]]['PatientID']) | |
2069 | |
2070 i = DoGet(_REMOTE, '/patients/%s/instances-tags?simplify' % DoGet(_REMOTE, '/studies')[0]) | |
2071 self.assertEqual(2, len(i)) | |
2072 self.assertEqual('887', i[i.keys()[0]]['PatientID']) | |
2073 self.assertEqual('887', i[i.keys()[1]]['PatientID']) | |
2074 | |
2075 self.assertEqual(2, len(DoGet(_REMOTE, '/series'))) | |
2076 i = DoGet(_REMOTE, '/patients/%s/instances-tags?simplify' % DoGet(_REMOTE, '/series')[0]) | |
2077 self.assertEqual(1, len(i)) | |
2078 self.assertEqual('887', i[i.keys()[0]]['PatientID']) | |
2079 | |
2080 i = DoGet(_REMOTE, '/patients/%s/instances-tags?simplify' % DoGet(_REMOTE, '/series')[1]) | |
2081 self.assertEqual(1, len(i)) | |
2082 self.assertEqual('887', i[i.keys()[0]]['PatientID']) | |
2083 | |
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2084 i = DoGet(_REMOTE, '/patients/%s/instances-tags?short' % DoGet(_REMOTE, '/series')[1]) |
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2085 self.assertEqual(1, len(i)) |
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2086 self.assertEqual('887', i[i.keys()[0]]['0010,0020']) |
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2087 |
14 | 2088 |
2089 def test_lookup(self): | |
2090 a = DoPost(_REMOTE, '/tools/lookup', 'ozp00SjY2xG') | |
2091 self.assertEqual(0, len(a)) | |
2092 | |
2093 UploadInstance(_REMOTE, 'DummyCT.dcm') | |
2094 | |
2095 a = DoPost(_REMOTE, '/tools/lookup', 'ozp00SjY2xG') | |
2096 self.assertEqual(1, len(a)) | |
2097 self.assertEqual('Patient', a[0]['Type']) | |
2098 self.assertEqual('6816cb19-844d5aee-85245eba-28e841e6-2414fae2', a[0]['ID']) | |
2099 self.assertEqual('/patients/%s' % a[0]['ID'], a[0]['Path']) | |
2100 | |
2101 a = DoPost(_REMOTE, '/tools/lookup', '1.2.840.113619.2.176.2025.1499492.7391.1171285944.390') | |
2102 self.assertEqual(1, len(a)) | |
2103 self.assertEqual('Study', a[0]['Type']) | |
2104 self.assertEqual('b9c08539-26f93bde-c81ab0d7-bffaf2cb-a4d0bdd0', a[0]['ID']) | |
2105 self.assertEqual('/studies/%s' % a[0]['ID'], a[0]['Path']) | |
2106 | |
2107 a = DoPost(_REMOTE, '/tools/lookup', '1.2.840.113619.2.176.2025.1499492.7391.1171285944.394') | |
2108 self.assertEqual(1, len(a)) | |
2109 self.assertEqual('Series', a[0]['Type']) | |
2110 self.assertEqual('f2635388-f01d497a-15f7c06b-ad7dba06-c4c599fe', a[0]['ID']) | |
2111 self.assertEqual('/series/%s' % a[0]['ID'], a[0]['Path']) | |
2112 | |
2113 a = DoPost(_REMOTE, '/tools/lookup', '1.2.840.113619.2.176.2025.1499492.7040.1171286242.109') | |
2114 self.assertEqual(1, len(a)) | |
2115 self.assertEqual('Instance', a[0]['Type']) | |
2116 self.assertEqual('66a662ce-7430e543-bad44d47-0dc5a943-ec7a538d', a[0]['ID']) | |
2117 self.assertEqual('/instances/%s' % a[0]['ID'], a[0]['Path']) | |
2118 | |
2119 DropOrthanc(_REMOTE) | |
2120 a = DoPost(_REMOTE, '/tools/lookup', '3113719P') | |
2121 self.assertEqual(0, len(a)) | |
2122 | |
15 | 2123 |
2124 def test_autorouting(self): | |
2125 knee1 = 'Knee/T1/IM-0001-0001.dcm' | |
2126 knee2 = 'Knee/T2/IM-0001-0002.dcm' | |
2127 other = 'Brainix/Flair/IM-0001-0001.dcm' | |
2128 | |
2129 # Check that this version is >= 0.8.0 | |
2130 self.assertTrue(IsDefinedInLua(_REMOTE, '_InitializeJob')) | |
2131 self.assertTrue('orthanctest' in DoGet(_REMOTE, '/modalities')) | |
2132 | |
2133 UploadInstance(_REMOTE, knee1) | |
2134 self.assertEqual(0, len(DoGet(_LOCAL, '/instances'))) | |
2135 | |
2136 DropOrthanc(_REMOTE) | |
2137 DropOrthanc(_LOCAL) | |
174 | 2138 InstallLuaScriptFromPath(_REMOTE, 'Lua/Autorouting.lua') |
15 | 2139 UploadInstance(_REMOTE, knee1) |
2140 UploadInstance(_REMOTE, knee2) | |
2141 UploadInstance(_REMOTE, other) | |
2142 WaitEmpty(_REMOTE) | |
174 | 2143 UninstallLuaCallbacks(_REMOTE) |
15 | 2144 self.assertEqual(3, len(DoGet(_LOCAL, '/instances'))) |
2145 | |
2146 DropOrthanc(_REMOTE) | |
2147 DropOrthanc(_LOCAL) | |
174 | 2148 InstallLuaScriptFromPath(_REMOTE, 'Lua/AutoroutingConditional.lua') |
15 | 2149 UploadInstance(_REMOTE, knee1) |
2150 UploadInstance(_REMOTE, knee2) | |
2151 UploadInstance(_REMOTE, other) | |
2152 WaitEmpty(_REMOTE) | |
174 | 2153 UninstallLuaCallbacks(_REMOTE) |
15 | 2154 self.assertEqual(2, len(DoGet(_LOCAL, '/instances'))) |
2155 | |
2156 DropOrthanc(_REMOTE) | |
2157 DropOrthanc(_LOCAL) | |
174 | 2158 InstallLuaScriptFromPath(_REMOTE, 'Lua/AutoroutingModification.lua') |
15 | 2159 UploadInstance(_REMOTE, knee1) |
2160 WaitEmpty(_REMOTE) | |
174 | 2161 UninstallLuaCallbacks(_REMOTE) |
15 | 2162 i = DoGet(_LOCAL, '/instances') |
2163 self.assertEqual(1, len(i)) | |
2164 | |
2165 with tempfile.NamedTemporaryFile(delete = True) as f: | |
2166 f.write(DoGet(_LOCAL, '/instances/%s/file' % i[0])) | |
2167 f.flush() | |
45 | 2168 routed = subprocess.check_output([ FindExecutable('dcm2xml'), f.name ]) |
15 | 2169 self.assertEqual('My Medical Device', re.search('"StationName">(.*?)<', routed).group(1).strip()) |
2170 self.assertEqual(None, re.search('"MilitaryRank"', routed)) | |
2171 self.assertEqual(None, re.search('"0051,0010"', routed)) # A private tag | |
17 | 2172 |
2173 | |
2174 def test_storescu_rf(self): | |
2175 i = UploadInstance(_REMOTE, 'KarstenHilbertRF.dcm')['ID'] | |
2176 self.assertEqual(0, len(DoGet(_LOCAL, '/instances'))) | |
2177 j = DoPost(_REMOTE, '/modalities/orthanctest/store', str(i), 'text/plain') | |
2178 self.assertEqual(1, len(DoGet(_LOCAL, '/instances'))) | |
18 | 2179 |
2180 | |
2181 def test_anonymize_instance(self): | |
2182 def AnonymizeAndUpload(instanceId, parameters): | |
2183 return DoPost(_REMOTE, '/instances', DoPost(_REMOTE, '/instances/%s/anonymize' % instanceId, parameters, | |
2184 'application/json'), 'application/dicom')['ID'] | |
2185 | |
2186 def ModifyAndUpload(instanceId, parameters): | |
2187 return DoPost(_REMOTE, '/instances', DoPost(_REMOTE, '/instances/%s/modify' % instanceId, parameters, | |
2188 'application/json'), 'application/dicom')['ID'] | |
2189 | |
2190 a = UploadInstance(_REMOTE, 'PrivateMDNTags.dcm')['ID'] | |
2191 s1 = DoGet(_REMOTE, '/instances/%s/content/PatientName' % a) | |
2192 s2 = DoGet(_REMOTE, '/instances/%s/content/00e1-10c2' % a) # Some private tag | |
2193 s3 = DoGet(_REMOTE, '/instances/%s/content/StudyDescription' % a) | |
2194 s4 = DoGet(_REMOTE, '/instances/%s/content/SeriesDescription' % a) | |
2195 s5 = DoGet(_REMOTE, '/instances/%s/content/InstitutionName' % a) | |
2196 | |
2197 b = AnonymizeAndUpload(a, '{}') | |
2198 self.assertNotEqual(s1, DoGet(_REMOTE, '/instances/%s/content/PatientName' % b)) | |
2199 self.assertRaises(Exception, lambda: DoGet(_REMOTE, '/instances/%s/content/00e1-10c2' % b)) | |
2200 | |
2201 # Keep private tag (only OK since Orthanc 0.8.0) | |
2202 b = AnonymizeAndUpload(a, '{"Keep":["00e1-10c2"]}') | |
2203 self.assertNotEqual(s1, DoGet(_REMOTE, '/instances/%s/content/PatientName' % b)) | |
2204 self.assertEqual(s2, DoGet(_REMOTE, '/instances/%s/content/00e1-10c2' % b)) | |
2205 | |
2206 b = AnonymizeAndUpload(a, '{"Keep":["00e1,10c2","PatientName"]}') | |
2207 self.assertEqual(s1, DoGet(_REMOTE, '/instances/%s/content/PatientName' % b)) | |
2208 self.assertEqual(s2, DoGet(_REMOTE, '/instances/%s/content/00e1-10c2' % b)) | |
2209 | |
2210 b = AnonymizeAndUpload(a, '{"Keep":["PatientName"],"Replace":{"00e1,10c2":"Hello"}}') | |
2211 self.assertEqual(s1, DoGet(_REMOTE, '/instances/%s/content/PatientName' % b)) | |
2212 self.assertTrue(DoGet(_REMOTE, '/instances/%s/content/00e1-10c2' % b).startswith('Hello')) | |
2213 | |
2214 # Examples from the Wiki | |
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2215 b = AnonymizeAndUpload(a, '{"Replace":{"PatientName":"hello","0010-0020":"world"},"Keep":["StudyDescription", "SeriesDescription"],"KeepPrivateTags": true,"Force":true}') |
18 | 2216 self.assertEqual('hello', DoGet(_REMOTE, '/instances/%s/content/0010-0010' % b).strip()) |
2217 self.assertEqual('world', DoGet(_REMOTE, '/instances/%s/content/PatientID' % b).strip()) | |
2218 self.assertEqual(s3, DoGet(_REMOTE, '/instances/%s/content/0008,1030' % b)) | |
2219 self.assertEqual(s4, DoGet(_REMOTE, '/instances/%s/content/0008,103e' % b)) | |
2220 self.assertEqual(s4, DoGet(_REMOTE, '/instances/%s/content/0008-103E' % b)) | |
2221 self.assertEqual(s2, DoGet(_REMOTE, '/instances/%s/content/00e1-10c2' % b)) | |
2222 DoGet(_REMOTE, '/instances/%s/content/InstitutionName' % a) | |
2223 self.assertRaises(Exception, lambda: DoGet(_REMOTE, '/instances/%s/content/InstitutionName' % b)) | |
2224 | |
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2225 b = ModifyAndUpload(a, '{"Replace":{"PatientName":"hello","PatientID":"world"},"Remove":["InstitutionName"],"RemovePrivateTags": true,"Force":true}') |
18 | 2226 self.assertEqual('hello', DoGet(_REMOTE, '/instances/%s/content/0010-0010' % b).strip()) |
2227 self.assertEqual('world', DoGet(_REMOTE, '/instances/%s/content/PatientID' % b).strip()) | |
2228 self.assertEqual(s3, DoGet(_REMOTE, '/instances/%s/content/0008,1030' % b)) | |
2229 self.assertEqual(s4, DoGet(_REMOTE, '/instances/%s/content/0008,103e' % b)) | |
2230 self.assertRaises(Exception, lambda: DoGet(_REMOTE, '/instances/%s/content/00e1-10c2' % b)) | |
2231 self.assertRaises(Exception, lambda: DoGet(_REMOTE, '/instances/%s/content/InstitutionName' % b)) | |
2232 | |
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2233 b = ModifyAndUpload(a, '{"Replace":{"PatientName":"hello","PatientID":"world"},"Force":true}') |
18 | 2234 self.assertEqual('hello', DoGet(_REMOTE, '/instances/%s/content/0010-0010' % b).strip()) |
2235 self.assertEqual('world', DoGet(_REMOTE, '/instances/%s/content/PatientID' % b).strip()) | |
2236 self.assertEqual(s2, DoGet(_REMOTE, '/instances/%s/content/00e1,10c2' % b)) | |
2237 self.assertEqual(s3, DoGet(_REMOTE, '/instances/%s/content/0008,1030' % b)) | |
2238 self.assertEqual(s4, DoGet(_REMOTE, '/instances/%s/content/0008-103E' % b)) | |
2239 self.assertEqual(s5, DoGet(_REMOTE, '/instances/%s/content/InstitutionName' % b)) | |
2240 | |
2241 | |
2242 # Test modify non-existing | |
2243 i = DoPost(_REMOTE, '/tools/create-dicom', | |
2244 json.dumps({ | |
2245 'PatientName' : 'Jodogne', | |
2246 'Modality' : 'CT', | |
2247 }))['ID'] | |
2248 | |
2249 self.assertEqual('Jodogne', DoGet(_REMOTE, '/instances/%s/content/PatientName' % i).strip()) | |
2250 self.assertRaises(Exception, lambda: DoGet(_REMOTE, '/instances/%s/content/StudyDescription' % i)) | |
2251 self.assertEqual('CT', DoGet(_REMOTE, '/instances/%s/content/Modality' % i).strip()) | |
2252 | |
2253 b = ModifyAndUpload(i, '{"Replace":{"StudyDescription":"hello","Modality":"world"}}') | |
2254 self.assertEqual('Jodogne', DoGet(_REMOTE, '/instances/%s/content/PatientName' % b).strip()) | |
2255 self.assertEqual('hello', DoGet(_REMOTE, '/instances/%s/content/StudyDescription' % b).strip()) | |
2256 self.assertEqual('world', DoGet(_REMOTE, '/instances/%s/content/Modality' % b).strip()) | |
2257 | |
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2258 |
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2259 def test_incoming_jpeg(self): |
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2260 def storescu(image, acceptUnknownSopClassUid): |
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2261 if acceptUnknownSopClassUid: |
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2262 tmp = [ '-xf', GetDatabasePath('UnknownSopClassUid.cfg'), 'Default' ] |
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2263 else: |
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2264 tmp = [ '-xs' ] |
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2265 |
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2266 with open(os.devnull, 'w') as FNULL: |
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2267 subprocess.check_call([ FindExecutable('storescu') ] + tmp + |
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2268 [ _REMOTE['Server'], str(_REMOTE['DicomPort']), |
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2269 GetDatabasePath(image) ], |
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2270 stderr = FNULL) |
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2271 |
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2272 self.assertEqual(0, len(DoGet(_REMOTE, '/patients'))) |
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2273 |
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2274 if IsOrthancVersionAbove(_REMOTE, 1, 9, 0): |
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2275 a = DoPut(_REMOTE, '/tools/accepted-transfer-syntaxes', [ |
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2276 '1.2.840.10008.1.2', '1.2.840.10008.1.2.1', '1.2.840.10008.1.2.2' |
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2277 ]) |
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2278 self.assertTrue('1.2.840.10008.1.2' in a) |
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2279 self.assertTrue('1.2.840.10008.1.2.1' in a) |
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2280 self.assertTrue('1.2.840.10008.1.2.2' in a) |
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2281 self.assertEqual(3, len(a)) |
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2282 self.assertRaises(Exception, lambda: DoPut(_REMOTE, '/tools/unknown-sop-class-accepted', 'nope')) |
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2283 DoPut(_REMOTE, '/tools/unknown-sop-class-accepted', '0') |
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2284 self.assertEqual(0, DoGet(_REMOTE, '/tools/unknown-sop-class-accepted')) |
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372
diff
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|
2285 else: |
f673153f27a4
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diff
changeset
|
2286 InstallLuaScriptFromPath(_REMOTE, 'Lua/TransferSyntaxDisable.lua') |
f673153f27a4
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372
diff
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|
2287 |
61
967d44407308
test UnknownSopClassAccepted option
Sebastien Jodogne <s.jodogne@gmail.com>
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60
diff
changeset
|
2288 self.assertRaises(Exception, lambda: storescu('Knix/Loc/IM-0001-0001.dcm', False)) |
967d44407308
test UnknownSopClassAccepted option
Sebastien Jodogne <s.jodogne@gmail.com>
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60
diff
changeset
|
2289 self.assertRaises(Exception, lambda: storescu('UnknownSopClassUid.dcm', True)) |
21
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tests of image decoding
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18
diff
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|
2290 self.assertEqual(0, len(DoGet(_REMOTE, '/patients'))) |
373
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diff
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2291 |
f673153f27a4
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diff
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|
2292 if IsOrthancVersionAbove(_REMOTE, 1, 9, 0): |
374 | 2293 a = DoPut(_REMOTE, '/tools/accepted-transfer-syntaxes', '*', 'text/plain') |
373
f673153f27a4
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diff
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|
2294 self.assertGreaterEqual(42, len(a)) |
f673153f27a4
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372
diff
changeset
|
2295 DoPut(_REMOTE, '/tools/unknown-sop-class-accepted', 'true') |
f673153f27a4
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372
diff
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|
2296 self.assertEqual(1, DoGet(_REMOTE, '/tools/unknown-sop-class-accepted')) |
f673153f27a4
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diff
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|
2297 else: |
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diff
changeset
|
2298 InstallLuaScriptFromPath(_REMOTE, 'Lua/TransferSyntaxEnable.lua') |
f673153f27a4
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372
diff
changeset
|
2299 |
62
f9c4ce95756f
removal of useless information
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
61
diff
changeset
|
2300 DoPost(_REMOTE, '/tools/execute-script', "print('All special transfer syntaxes are now accepted')") |
61
967d44407308
test UnknownSopClassAccepted option
Sebastien Jodogne <s.jodogne@gmail.com>
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60
diff
changeset
|
2301 storescu('Knix/Loc/IM-0001-0001.dcm', False) |
967d44407308
test UnknownSopClassAccepted option
Sebastien Jodogne <s.jodogne@gmail.com>
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60
diff
changeset
|
2302 storescu('UnknownSopClassUid.dcm', True) |
967d44407308
test UnknownSopClassAccepted option
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60
diff
changeset
|
2303 self.assertEqual(2, len(DoGet(_REMOTE, '/patients'))) |
21
2a29bcff60a7
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18
diff
changeset
|
2304 |
2a29bcff60a7
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parents:
18
diff
changeset
|
2305 |
2a29bcff60a7
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parents:
18
diff
changeset
|
2306 def test_storescu_jpeg(self): |
2a29bcff60a7
tests of image decoding
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18
diff
changeset
|
2307 self.assertEqual(0, len(DoGet(_REMOTE, '/exports')['Exports'])) |
2a29bcff60a7
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parents:
18
diff
changeset
|
2308 |
2a29bcff60a7
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parents:
18
diff
changeset
|
2309 knixStudy = 'b9c08539-26f93bde-c81ab0d7-bffaf2cb-a4d0bdd0' |
64 | 2310 i = UploadInstance(_REMOTE, 'Knix/Loc/IM-0001-0001.dcm')['ID'] |
2311 | |
2312 # This is JPEG lossless | |
136
5634ef96fcc5
testing "short" option
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133
diff
changeset
|
2313 self.assertEqual('1.2.840.10008.1.2.4.70', DoGet(_REMOTE, '/instances/%s/header' % i)['0002,0010']['Value']) |
64 | 2314 self.assertEqual('1.2.840.10008.1.2.4.70', DoGet(_REMOTE, '/instances/%s/header?simplify' % i)['TransferSyntaxUID']) |
136
5634ef96fcc5
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diff
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|
2315 self.assertEqual('1.2.840.10008.1.2.4.70', DoGet(_REMOTE, '/instances/%s/header?short' % i)['0002,0010']) |
64 | 2316 |
21
2a29bcff60a7
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18
diff
changeset
|
2317 UploadInstance(_REMOTE, 'Knix/Loc/IM-0001-0002.dcm') |
2a29bcff60a7
tests of image decoding
Sebastien Jodogne <s.jodogne@gmail.com>
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18
diff
changeset
|
2318 UploadInstance(_REMOTE, 'Knix/Loc/IM-0001-0003.dcm') |
2a29bcff60a7
tests of image decoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
18
diff
changeset
|
2319 |
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18
diff
changeset
|
2320 a = UploadInstance(_REMOTE, 'Brainix/Flair/IM-0001-0001.dcm')['ID'] |
2a29bcff60a7
tests of image decoding
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parents:
18
diff
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|
2321 b = UploadInstance(_REMOTE, 'ColorTestImageJ.dcm')['ID'] |
2a29bcff60a7
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parents:
18
diff
changeset
|
2322 self.assertEqual(0, len(DoGet(_LOCAL, '/instances'))) |
2a29bcff60a7
tests of image decoding
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parents:
18
diff
changeset
|
2323 DoPost(_REMOTE, '/modalities/orthanctest/store', [ knixStudy, a, b ]) |
2a29bcff60a7
tests of image decoding
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18
diff
changeset
|
2324 self.assertEqual(5, len(DoGet(_LOCAL, '/instances'))) |
2a29bcff60a7
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Sebastien Jodogne <s.jodogne@gmail.com>
parents:
18
diff
changeset
|
2325 |
2a29bcff60a7
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parents:
18
diff
changeset
|
2326 self.assertEqual(3, len(DoGet(_REMOTE, '/exports')['Exports'])) |
2a29bcff60a7
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Sebastien Jodogne <s.jodogne@gmail.com>
parents:
18
diff
changeset
|
2327 |
2a29bcff60a7
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Sebastien Jodogne <s.jodogne@gmail.com>
parents:
18
diff
changeset
|
2328 DropOrthanc(_REMOTE) |
2a29bcff60a7
tests of image decoding
Sebastien Jodogne <s.jodogne@gmail.com>
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18
diff
changeset
|
2329 self.assertEqual(0, len(DoGet(_REMOTE, '/exports')['Exports'])) |
2a29bcff60a7
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Sebastien Jodogne <s.jodogne@gmail.com>
parents:
18
diff
changeset
|
2330 |
2a29bcff60a7
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Sebastien Jodogne <s.jodogne@gmail.com>
parents:
18
diff
changeset
|
2331 |
2a29bcff60a7
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18
diff
changeset
|
2332 def test_pixel_data(self): |
2a29bcff60a7
tests of image decoding
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parents:
18
diff
changeset
|
2333 jpeg = UploadInstance(_REMOTE, 'Knix/Loc/IM-0001-0001.dcm')['ID'] |
2a29bcff60a7
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Sebastien Jodogne <s.jodogne@gmail.com>
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18
diff
changeset
|
2334 color = UploadInstance(_REMOTE, 'ColorTestImageJ.dcm')['ID'] |
2a29bcff60a7
tests of image decoding
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parents:
18
diff
changeset
|
2335 phenix = UploadInstance(_REMOTE, 'Phenix/IM-0001-0001.dcm')['ID'] |
2a29bcff60a7
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Sebastien Jodogne <s.jodogne@gmail.com>
parents:
18
diff
changeset
|
2336 |
2a29bcff60a7
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Sebastien Jodogne <s.jodogne@gmail.com>
parents:
18
diff
changeset
|
2337 phenixSize = 358 * 512 * 2 |
2a29bcff60a7
tests of image decoding
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parents:
18
diff
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|
2338 colorSize = 1000 * 1000 * 3 |
2a29bcff60a7
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18
diff
changeset
|
2339 jpegSize = 51918 |
2a29bcff60a7
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Sebastien Jodogne <s.jodogne@gmail.com>
parents:
18
diff
changeset
|
2340 |
2a29bcff60a7
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Sebastien Jodogne <s.jodogne@gmail.com>
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18
diff
changeset
|
2341 self.assertEqual(1, len(DoGet(_REMOTE, '/instances/%s/content/7fe0-0010' % phenix))) |
2a29bcff60a7
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18
diff
changeset
|
2342 self.assertEqual(1, len(DoGet(_REMOTE, '/instances/%s/content/7fe0-0010' % color))) |
2a29bcff60a7
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18
diff
changeset
|
2343 self.assertEqual(2, len(DoGet(_REMOTE, '/instances/%s/content/7fe0-0010' % jpeg))) |
2a29bcff60a7
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Sebastien Jodogne <s.jodogne@gmail.com>
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18
diff
changeset
|
2344 |
2a29bcff60a7
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Sebastien Jodogne <s.jodogne@gmail.com>
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18
diff
changeset
|
2345 self.assertEqual(0, len(DoGet(_REMOTE, '/instances/%s/content/7fe0-0010/0' % jpeg))) |
2a29bcff60a7
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Sebastien Jodogne <s.jodogne@gmail.com>
parents:
18
diff
changeset
|
2346 self.assertEqual(jpegSize, len(DoGet(_REMOTE, '/instances/%s/content/7fe0-0010/1' % jpeg))) |
2a29bcff60a7
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Sebastien Jodogne <s.jodogne@gmail.com>
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18
diff
changeset
|
2347 |
2a29bcff60a7
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18
diff
changeset
|
2348 self.assertEqual(phenixSize, len(DoGet(_REMOTE, '/instances/%s/content/7fe0-0010/0' % phenix))) |
2a29bcff60a7
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Sebastien Jodogne <s.jodogne@gmail.com>
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18
diff
changeset
|
2349 self.assertEqual(colorSize, len(DoGet(_REMOTE, '/instances/%s/content/7fe0-0010/0' % color))) |
2a29bcff60a7
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Sebastien Jodogne <s.jodogne@gmail.com>
parents:
18
diff
changeset
|
2350 |
2a29bcff60a7
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Sebastien Jodogne <s.jodogne@gmail.com>
parents:
18
diff
changeset
|
2351 |
2a29bcff60a7
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Sebastien Jodogne <s.jodogne@gmail.com>
parents:
18
diff
changeset
|
2352 def test_decode_brainix(self): |
2a29bcff60a7
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Sebastien Jodogne <s.jodogne@gmail.com>
parents:
18
diff
changeset
|
2353 brainix = [ |
2a29bcff60a7
tests of image decoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
18
diff
changeset
|
2354 UploadInstance(_REMOTE, 'Brainix/Epi/IM-0001-0001.dcm')['ID'], # (*) |
2a29bcff60a7
tests of image decoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
18
diff
changeset
|
2355 UploadInstance(_REMOTE, 'Formats/JpegLossless.dcm')['ID'], # JPEG-LS, same as (*) (since Orthanc 0.7.6) |
2a29bcff60a7
tests of image decoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
18
diff
changeset
|
2356 UploadInstance(_REMOTE, 'Formats/Jpeg.dcm')['ID'], # JPEG, same as (*) (since Orthanc 0.7.6) |
2a29bcff60a7
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Sebastien Jodogne <s.jodogne@gmail.com>
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18
diff
changeset
|
2357 ] |
2a29bcff60a7
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Sebastien Jodogne <s.jodogne@gmail.com>
parents:
18
diff
changeset
|
2358 h = '6fb11b932d535c2be04beabd99793ff8' |
2a29bcff60a7
tests of image decoding
Sebastien Jodogne <s.jodogne@gmail.com>
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18
diff
changeset
|
2359 maxValue = 426.0 |
2a29bcff60a7
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Sebastien Jodogne <s.jodogne@gmail.com>
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18
diff
changeset
|
2360 |
2a29bcff60a7
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Sebastien Jodogne <s.jodogne@gmail.com>
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18
diff
changeset
|
2361 truth = Image.open(GetDatabasePath('Formats/Brainix.png')) |
2a29bcff60a7
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Sebastien Jodogne <s.jodogne@gmail.com>
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18
diff
changeset
|
2362 for i in brainix: |
2a29bcff60a7
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parents:
18
diff
changeset
|
2363 self.AssertSameImages(truth.getdata(), '/instances/%s/image-int16' % i) |
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18
diff
changeset
|
2364 self.AssertSameImages(truth.getdata(), '/instances/%s/image-uint16' % i) |
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18
diff
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|
2365 |
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18
diff
changeset
|
2366 truth2 = map(lambda x: min(255, x), truth.getdata()) |
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Sebastien Jodogne <s.jodogne@gmail.com>
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18
diff
changeset
|
2367 for i in brainix: |
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18
diff
changeset
|
2368 self.AssertSameImages(truth2, '/instances/%s/image-uint8' % i) |
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18
diff
changeset
|
2369 |
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18
diff
changeset
|
2370 truth2 = map(lambda x: x * 255.0 / maxValue, truth.getdata()) |
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18
diff
changeset
|
2371 for i in brainix: |
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18
diff
changeset
|
2372 self.AssertSameImages(truth2, '/instances/%s/preview' % i) |
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18
diff
changeset
|
2373 |
2a29bcff60a7
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18
diff
changeset
|
2374 for i in brainix: |
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18
diff
changeset
|
2375 self.assertEqual(h, ComputeMD5(DoGet(_REMOTE, '/instances/%s/matlab' % i))) |
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18
diff
changeset
|
2376 |
2a29bcff60a7
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18
diff
changeset
|
2377 |
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diff
changeset
|
2378 def test_decode_color(self): |
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diff
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|
2379 imagej = UploadInstance(_REMOTE, 'ColorTestImageJ.dcm')['ID'] |
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18
diff
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|
2380 color = UploadInstance(_REMOTE, 'ColorTestMalaterre.dcm')['ID'] |
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18
diff
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|
2381 |
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18
diff
changeset
|
2382 for i in [ imagej, color ]: |
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18
diff
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|
2383 for j in [ 'image-uint8', 'image-uint16', 'image-int16' ]: |
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18
diff
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|
2384 self.assertRaises(Exception, lambda: DoGet(_REMOTE, '/instances/%s/%s' % (i, j))) |
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18
diff
changeset
|
2385 |
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18
diff
changeset
|
2386 self.assertEqual('c14c687f7a1ea9fe022479fc87c67274', ComputeMD5(DoGet(_REMOTE, '/instances/%s/preview' % imagej))) |
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diff
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|
2387 self.assertEqual('a87d122918a56f803bcfe9d2586b9125', ComputeMD5(DoGet(_REMOTE, '/instances/%s/preview' % color))) |
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diff
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|
2388 |
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18
diff
changeset
|
2389 self.assertEqual('30cc46bfa7aba77a40e4178f6184c25a', ComputeMD5(DoGet(_REMOTE, '/instances/%s/matlab' % imagej))) |
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18
diff
changeset
|
2390 self.assertEqual('ff195005cef06b59666fd220a9b4cd9a', ComputeMD5(DoGet(_REMOTE, '/instances/%s/matlab' % color))) |
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diff
changeset
|
2391 |
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18
diff
changeset
|
2392 |
2a29bcff60a7
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parents:
18
diff
changeset
|
2393 def test_decode_rf(self): |
2a29bcff60a7
tests of image decoding
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parents:
18
diff
changeset
|
2394 rf = UploadInstance(_REMOTE, 'KarstenHilbertRF.dcm')['ID'] |
2a29bcff60a7
tests of image decoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
18
diff
changeset
|
2395 truth = Image.open(GetDatabasePath('Formats/KarstenHilbertRF.png')) |
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tests of image decoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
18
diff
changeset
|
2396 |
2a29bcff60a7
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parents:
18
diff
changeset
|
2397 self.AssertSameImages(truth.getdata(), '/instances/%s/image-uint8' % rf) |
2a29bcff60a7
tests of image decoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
18
diff
changeset
|
2398 self.AssertSameImages(truth.getdata(), '/instances/%s/image-uint16' % rf) |
2a29bcff60a7
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parents:
18
diff
changeset
|
2399 self.AssertSameImages(truth.getdata(), '/instances/%s/image-int16' % rf) |
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tests of image decoding
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parents:
18
diff
changeset
|
2400 self.AssertSameImages(truth.getdata(), '/instances/%s/preview' % rf) |
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Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
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|
2401 |
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tests of image decoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
18
diff
changeset
|
2402 self.assertEqual('42254d70efd2f4a1b8f3455909689f0e', ComputeMD5(DoGet(_REMOTE, '/instances/%s/matlab' % rf))) |
2a29bcff60a7
tests of image decoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
18
diff
changeset
|
2403 |
2a29bcff60a7
tests of image decoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
18
diff
changeset
|
2404 |
2a29bcff60a7
tests of image decoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
18
diff
changeset
|
2405 def test_decode_multiframe(self): |
2a29bcff60a7
tests of image decoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
18
diff
changeset
|
2406 mf = UploadInstance(_REMOTE, 'Multiframe.dcm')['ID'] |
2a29bcff60a7
tests of image decoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
18
diff
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|
2407 |
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tests of image decoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
18
diff
changeset
|
2408 # Test the first frame |
2a29bcff60a7
tests of image decoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
18
diff
changeset
|
2409 truth = Image.open(GetDatabasePath('Formats/Multiframe0.png')) |
2a29bcff60a7
tests of image decoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
18
diff
changeset
|
2410 self.AssertSameImages(truth.getdata(), '/instances/%s/image-uint8' % mf) |
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tests of image decoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
18
diff
changeset
|
2411 self.AssertSameImages(truth.getdata(), '/instances/%s/image-uint16' % mf) |
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tests of image decoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
18
diff
changeset
|
2412 self.AssertSameImages(truth.getdata(), '/instances/%s/image-int16' % mf) |
2a29bcff60a7
tests of image decoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
18
diff
changeset
|
2413 self.AssertSameImages(truth.getdata(), '/instances/%s/preview' % mf) |
2a29bcff60a7
tests of image decoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
18
diff
changeset
|
2414 self.assertEqual('9812b99d93bbcd4e7684ded089b5dfb3', ComputeMD5(DoGet(_REMOTE, '/instances/%s/matlab' % mf))) |
2a29bcff60a7
tests of image decoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
18
diff
changeset
|
2415 |
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Sebastien Jodogne <s.jodogne@gmail.com>
parents:
18
diff
changeset
|
2416 self.AssertSameImages(truth.getdata(), '/instances/%s/frames/0/image-uint16' % mf) |
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Sebastien Jodogne <s.jodogne@gmail.com>
parents:
18
diff
changeset
|
2417 |
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tests of image decoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
18
diff
changeset
|
2418 # Test the last frame |
2a29bcff60a7
tests of image decoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
18
diff
changeset
|
2419 truth = Image.open(GetDatabasePath('Formats/Multiframe75.png')) |
2a29bcff60a7
tests of image decoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
18
diff
changeset
|
2420 self.AssertSameImages(truth.getdata(), '/instances/%s/frames/75/image-uint16' % mf) |
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tests of image decoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
18
diff
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|
2421 |
2a29bcff60a7
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Sebastien Jodogne <s.jodogne@gmail.com>
parents:
18
diff
changeset
|
2422 |
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tests of image decoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
18
diff
changeset
|
2423 def test_decode_signed(self): |
2a29bcff60a7
tests of image decoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
18
diff
changeset
|
2424 signed = UploadInstance(_REMOTE, 'SignedCT.dcm')['ID'] |
2a29bcff60a7
tests of image decoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
18
diff
changeset
|
2425 minValue = -2000 |
2a29bcff60a7
tests of image decoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
18
diff
changeset
|
2426 maxValue = 4042 |
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Sebastien Jodogne <s.jodogne@gmail.com>
parents:
18
diff
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|
2427 |
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Sebastien Jodogne <s.jodogne@gmail.com>
parents:
18
diff
changeset
|
2428 truth = Image.open(GetDatabasePath('Formats/SignedCT.png')) |
2a29bcff60a7
tests of image decoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
18
diff
changeset
|
2429 self.AssertSameImages(truth.getdata(), '/instances/%s/image-int16' % signed) |
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Sebastien Jodogne <s.jodogne@gmail.com>
parents:
18
diff
changeset
|
2430 |
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Sebastien Jodogne <s.jodogne@gmail.com>
parents:
18
diff
changeset
|
2431 truth2 = map(lambda x: 0 if x >= 32768 else x, truth.getdata()) |
2a29bcff60a7
tests of image decoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
18
diff
changeset
|
2432 self.AssertSameImages(truth2, '/instances/%s/image-uint16' % signed) |
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tests of image decoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
18
diff
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|
2433 |
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Sebastien Jodogne <s.jodogne@gmail.com>
parents:
18
diff
changeset
|
2434 truth3 = map(lambda x: 255 if x >= 256 else x, truth2) |
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tests of image decoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
18
diff
changeset
|
2435 self.AssertSameImages(truth3, '/instances/%s/image-uint8' % signed) |
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tests of image decoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
18
diff
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|
2436 |
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tests of image decoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
18
diff
changeset
|
2437 tmp = map(lambda x: x - 65536 if x >= 32768 else x, truth.getdata()) |
2a29bcff60a7
tests of image decoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
18
diff
changeset
|
2438 tmp = map(lambda x: (255.0 * (x - minValue)) / (maxValue - minValue), tmp) |
2a29bcff60a7
tests of image decoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
18
diff
changeset
|
2439 self.AssertSameImages(tmp, '/instances/%s/preview' % signed) |
2a29bcff60a7
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Sebastien Jodogne <s.jodogne@gmail.com>
parents:
18
diff
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|
2440 |
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Sebastien Jodogne <s.jodogne@gmail.com>
parents:
18
diff
changeset
|
2441 self.assertEqual('b57e6c872a3da50877c7da689b03a444', ComputeMD5(DoGet(_REMOTE, '/instances/%s/matlab' % signed))) |
22 | 2442 |
2443 | |
46
85b2e36ed392
explicit GoogleCode source
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
45
diff
changeset
|
2444 def test_googlecode_issue_32(self): |
92
dbcbffb889da
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Sebastien Jodogne <s.jodogne@gmail.com>
parents:
89
diff
changeset
|
2445 self.assertRaises(Exception, lambda: DoPut(_REMOTE, '/tools/default-encoding', 'nope')) |
dbcbffb889da
test_findscu_encoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
89
diff
changeset
|
2446 self.assertEqual('Windows1251', DoPut(_REMOTE, '/tools/default-encoding', 'Windows1251')) |
dbcbffb889da
test_findscu_encoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
89
diff
changeset
|
2447 self.assertEqual('Windows1251', DoGet(_REMOTE, '/tools/default-encoding')) |
dbcbffb889da
test_findscu_encoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
89
diff
changeset
|
2448 |
22 | 2449 f = UploadInstance(_REMOTE, 'Issue32.dcm')['ID'] |
2450 tags = DoGet(_REMOTE, '/instances/%s/tags?simplify' % f) | |
2451 self.assertEqual(u'Рентгенография', tags['SeriesDescription']) | |
2452 self.assertEqual(u'Таз', tags['BodyPartExamined']) | |
2453 self.assertEqual(u'Прямая', tags['ViewPosition']) | |
2454 | |
92
dbcbffb889da
test_findscu_encoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
89
diff
changeset
|
2455 # Replay the same test using Latin1 as default encoding: This must fail |
dbcbffb889da
test_findscu_encoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
89
diff
changeset
|
2456 self.assertEqual('Latin1', DoPut(_REMOTE, '/tools/default-encoding', 'Latin1')) |
dbcbffb889da
test_findscu_encoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
89
diff
changeset
|
2457 |
dbcbffb889da
test_findscu_encoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
89
diff
changeset
|
2458 DoDelete(_REMOTE, '/instances/%s' % f) |
dbcbffb889da
test_findscu_encoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
89
diff
changeset
|
2459 f = UploadInstance(_REMOTE, 'Issue32.dcm')['ID'] |
dbcbffb889da
test_findscu_encoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
89
diff
changeset
|
2460 tags = DoGet(_REMOTE, '/instances/%s/tags?simplify' % f) |
dbcbffb889da
test_findscu_encoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
89
diff
changeset
|
2461 self.assertNotEqual(u'Рентгенография', tags['SeriesDescription']) |
dbcbffb889da
test_findscu_encoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
89
diff
changeset
|
2462 |
314 | 2463 # Back to UTF-8 |
2464 self.assertEqual('Utf8', DoPut(_REMOTE, '/tools/default-encoding', 'Utf8')) | |
2465 | |
92
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Sebastien Jodogne <s.jodogne@gmail.com>
parents:
89
diff
changeset
|
2466 |
22 | 2467 def test_encodings(self): |
23 | 2468 # Latin-1 (ISO_IR 100) |
22 | 2469 brainix = UploadInstance(_REMOTE, 'Brainix/Epi/IM-0001-0001.dcm')['ID'] |
2470 tags = DoGet(_REMOTE, '/instances/%s/tags?simplify' % brainix) | |
2471 self.assertEqual(u'IRM cérébrale, neuro-crâne', tags['StudyDescription']) | |
23 | 2472 |
2473 # Latin-2 (ISO_IR 101) | |
2474 a = UploadInstance(_REMOTE, 'MarekLatin2.dcm')['ID'] | |
2475 i = DoGet(_REMOTE, '/instances/%s/simplified-tags' % a) | |
2476 # dcm2xml MarekLatin2.dcm | iconv -f latin2 -t utf-8 | xmllint --format - | |
2477 self.assertEqual('Imię i Nazwisko osoby opisującej', | |
2478 i['ContentSequence'][4]['ConceptNameCodeSequence'][0]['CodeMeaning'].encode('utf-8')) | |
2479 | |
26
040f6ef1394a
test_storescu_custom_aet
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
23
diff
changeset
|
2480 |
040f6ef1394a
test_storescu_custom_aet
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
23
diff
changeset
|
2481 def test_storescu_custom_aet(self): |
040f6ef1394a
test_storescu_custom_aet
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parents:
23
diff
changeset
|
2482 # This tests a feature introduced in Orthanc 0.9.1: "Custom |
040f6ef1394a
test_storescu_custom_aet
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
23
diff
changeset
|
2483 # setting of the local AET during C-Store SCU (both in Lua and |
040f6ef1394a
test_storescu_custom_aet
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
23
diff
changeset
|
2484 # in the REST API)." |
040f6ef1394a
test_storescu_custom_aet
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
23
diff
changeset
|
2485 # https://groups.google.com/forum/#!msg/orthanc-users/o5qMULformU/wZjW2iSaMcAJ |
040f6ef1394a
test_storescu_custom_aet
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
23
diff
changeset
|
2486 |
040f6ef1394a
test_storescu_custom_aet
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
23
diff
changeset
|
2487 self.assertEqual(0, len(DoGet(_LOCAL, '/patients'))) |
040f6ef1394a
test_storescu_custom_aet
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
23
diff
changeset
|
2488 |
040f6ef1394a
test_storescu_custom_aet
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
23
diff
changeset
|
2489 a = UploadInstance(_REMOTE, 'Knee/T1/IM-0001-0001.dcm') |
040f6ef1394a
test_storescu_custom_aet
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
23
diff
changeset
|
2490 b = UploadInstance(_REMOTE, 'Knee/T1/IM-0001-0002.dcm') |
040f6ef1394a
test_storescu_custom_aet
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
23
diff
changeset
|
2491 c = UploadInstance(_REMOTE, 'Knee/T1/IM-0001-0003.dcm') |
040f6ef1394a
test_storescu_custom_aet
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
23
diff
changeset
|
2492 |
040f6ef1394a
test_storescu_custom_aet
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
23
diff
changeset
|
2493 j = DoPost(_REMOTE, '/modalities/orthanctest/store', { |
040f6ef1394a
test_storescu_custom_aet
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
23
diff
changeset
|
2494 'LocalAet' : 'YOP', |
040f6ef1394a
test_storescu_custom_aet
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23
diff
changeset
|
2495 'Resources' : [ a['ID'], b['ID'] ] |
040f6ef1394a
test_storescu_custom_aet
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parents:
23
diff
changeset
|
2496 }) |
040f6ef1394a
test_storescu_custom_aet
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23
diff
changeset
|
2497 |
040f6ef1394a
test_storescu_custom_aet
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
23
diff
changeset
|
2498 self.assertEqual(2, len(DoGet(_LOCAL, '/instances'))) |
040f6ef1394a
test_storescu_custom_aet
Sebastien Jodogne <s.jodogne@gmail.com>
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23
diff
changeset
|
2499 self.assertEqual('YOP', DoGet(_LOCAL, '/instances/%s/metadata/RemoteAET' % a['ID'])) |
040f6ef1394a
test_storescu_custom_aet
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23
diff
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|
2500 |
040f6ef1394a
test_storescu_custom_aet
Sebastien Jodogne <s.jodogne@gmail.com>
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23
diff
changeset
|
2501 DropOrthanc(_LOCAL) |
040f6ef1394a
test_storescu_custom_aet
Sebastien Jodogne <s.jodogne@gmail.com>
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23
diff
changeset
|
2502 self.assertEqual(0, len(DoGet(_LOCAL, '/instances'))) |
040f6ef1394a
test_storescu_custom_aet
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23
diff
changeset
|
2503 |
040f6ef1394a
test_storescu_custom_aet
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
23
diff
changeset
|
2504 j = DoPost(_REMOTE, '/modalities/orthanctest/store', { |
040f6ef1394a
test_storescu_custom_aet
Sebastien Jodogne <s.jodogne@gmail.com>
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diff
changeset
|
2505 'Resources' : [ c['ID'] ] |
040f6ef1394a
test_storescu_custom_aet
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diff
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|
2506 }) |
040f6ef1394a
test_storescu_custom_aet
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23
diff
changeset
|
2507 |
040f6ef1394a
test_storescu_custom_aet
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
23
diff
changeset
|
2508 self.assertEqual(1, len(DoGet(_LOCAL, '/instances'))) |
040f6ef1394a
test_storescu_custom_aet
Sebastien Jodogne <s.jodogne@gmail.com>
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23
diff
changeset
|
2509 self.assertEqual('ORTHANC', DoGet(_LOCAL, '/instances/%s/metadata/RemoteAET' % c['ID'])) |
040f6ef1394a
test_storescu_custom_aet
Sebastien Jodogne <s.jodogne@gmail.com>
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diff
changeset
|
2510 |
040f6ef1394a
test_storescu_custom_aet
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diff
changeset
|
2511 DropOrthanc(_REMOTE) |
040f6ef1394a
test_storescu_custom_aet
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23
diff
changeset
|
2512 DropOrthanc(_LOCAL) |
040f6ef1394a
test_storescu_custom_aet
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
23
diff
changeset
|
2513 |
174 | 2514 InstallLuaScriptFromPath(_REMOTE, 'Lua/AutoroutingChangeAet.lua') |
26
040f6ef1394a
test_storescu_custom_aet
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
23
diff
changeset
|
2515 DoPost(_REMOTE, '/tools/execute-script', 'aet = "HELLO"', 'application/lua') |
040f6ef1394a
test_storescu_custom_aet
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
23
diff
changeset
|
2516 |
040f6ef1394a
test_storescu_custom_aet
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
changeset
|
2517 self.assertEqual(0, len(DoGet(_LOCAL, '/instances'))) |
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test_storescu_custom_aet
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2518 UploadInstance(_REMOTE, 'Knee/T1/IM-0001-0001.dcm') |
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test_storescu_custom_aet
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2519 WaitEmpty(_REMOTE) |
040f6ef1394a
test_storescu_custom_aet
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diff
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2520 self.assertEqual(1, len(DoGet(_LOCAL, '/instances'))) |
040f6ef1394a
test_storescu_custom_aet
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2521 self.assertEqual('HELLO', DoGet(_LOCAL, '/instances/%s/metadata/RemoteAET' % a['ID'])) |
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test_storescu_custom_aet
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diff
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|
2522 |
040f6ef1394a
test_storescu_custom_aet
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2523 DoPost(_REMOTE, '/tools/execute-script', 'aet = nill', 'application/lua') |
040f6ef1394a
test_storescu_custom_aet
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diff
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2524 UploadInstance(_REMOTE, 'Knee/T1/IM-0001-0002.dcm') |
040f6ef1394a
test_storescu_custom_aet
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|
2525 WaitEmpty(_REMOTE) |
040f6ef1394a
test_storescu_custom_aet
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diff
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2526 self.assertEqual(2, len(DoGet(_LOCAL, '/instances'))) |
040f6ef1394a
test_storescu_custom_aet
Sebastien Jodogne <s.jodogne@gmail.com>
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diff
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|
2527 self.assertEqual('ORTHANC', DoGet(_LOCAL, '/instances/%s/metadata/RemoteAET' % b['ID'])) |
34
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2528 |
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2529 def test_resources_since_limit(self): |
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2530 # Upload 16 instances |
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|
2531 for i in range(4): |
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2532 UploadInstance(_REMOTE, 'Brainix/Flair/IM-0001-000%d.dcm' % (i + 1)) |
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2533 UploadInstance(_REMOTE, 'Brainix/Epi/IM-0001-000%d.dcm' % (i + 1)) |
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2534 UploadInstance(_REMOTE, 'Knee/T1/IM-0001-000%d.dcm' % (i + 1)) |
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2535 UploadInstance(_REMOTE, 'Knee/T2/IM-0001-000%d.dcm' % (i + 1)) |
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2536 |
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2537 self.assertEqual(2, len(DoGet(_REMOTE, '/patients'))) |
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2538 self.assertEqual(2, len(DoGet(_REMOTE, '/studies'))) |
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diff
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2539 self.assertEqual(4, len(DoGet(_REMOTE, '/series'))) |
1047d7bc5210
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diff
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2540 self.assertEqual(16, len(DoGet(_REMOTE, '/instances'))) |
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diff
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|
2541 |
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diff
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2542 self.assertRaises(Exception, lambda: DoGet(_REMOTE, '/patients&since=10' % i)) |
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diff
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2543 self.assertRaises(Exception, lambda: DoGet(_REMOTE, '/patients&limit=10' % i)) |
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2544 |
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2545 self.assertEqual(0, len(DoGet(_REMOTE, '/patients?since=0&limit=0'))) |
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2546 self.assertEqual(2, len(DoGet(_REMOTE, '/patients?since=0&limit=100'))) |
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2547 self.assertEqual(2, len(DoGet(_REMOTE, '/studies?since=0&limit=100'))) |
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diff
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2548 self.assertEqual(4, len(DoGet(_REMOTE, '/series?since=0&limit=100'))) |
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diff
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2549 self.assertEqual(16, len(DoGet(_REMOTE, '/instances?since=0&limit=100'))) |
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2550 self.assertEqual(1, len(DoGet(_REMOTE, '/patients?since=1&limit=100'))) |
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diff
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2551 self.assertEqual(0, len(DoGet(_REMOTE, '/patients?since=2&limit=100'))) |
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2552 self.assertEqual(0, len(DoGet(_REMOTE, '/patients?since=3&limit=100'))) |
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2553 self.assertEqual(1, len(DoGet(_REMOTE, '/studies?since=1&limit=100'))) |
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2554 self.assertEqual(3, len(DoGet(_REMOTE, '/series?since=1&limit=100'))) |
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2555 self.assertEqual(2, len(DoGet(_REMOTE, '/series?since=2&limit=100'))) |
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2556 self.assertEqual(1, len(DoGet(_REMOTE, '/series?since=3&limit=100'))) |
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2557 self.assertEqual(0, len(DoGet(_REMOTE, '/series?since=4&limit=100'))) |
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2558 self.assertEqual(0, len(DoGet(_REMOTE, '/series?since=100&limit=100'))) |
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2559 self.assertEqual(15, len(DoGet(_REMOTE, '/instances?since=1&limit=100'))) |
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|
2560 |
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diff
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|
2561 for limit in [ 1, 2, 3, 7, 16, 17 ]: |
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|
2562 s = {} |
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|
2563 since = 0 |
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|
2564 while True: |
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|
2565 t = DoGet(_REMOTE, '/instances?since=%d&limit=%d' % (since, limit)) |
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Sebastien Jodogne <s.jodogne@gmail.com>
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diff
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|
2566 if len(t) == 0: |
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diff
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|
2567 break |
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diff
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|
2568 |
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|
2569 since += len(t) |
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diff
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|
2570 for i in t: |
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|
2571 s[i] = None |
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diff
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|
2572 |
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diff
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|
2573 self.assertEqual(16, len(s)) |
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|
2574 for instance in DoGet(_REMOTE, '/instances'): |
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|
2575 self.assertTrue(instance in s) |
36 | 2576 |
2577 | |
2578 def test_create_pdf(self): | |
2579 # Upload 4 instances | |
2580 brainixInstance = UploadInstance(_REMOTE, 'Brainix/Flair/IM-0001-0001.dcm')['ID'] | |
2581 UploadInstance(_REMOTE, 'Brainix/Epi/IM-0001-0001.dcm') | |
2582 UploadInstance(_REMOTE, 'Knee/T1/IM-0001-0001.dcm') | |
2583 UploadInstance(_REMOTE, 'Knee/T2/IM-0001-0001.dcm') | |
2584 | |
2585 brainixPatient = '16738bc3-e47ed42a-43ce044c-a3414a45-cb069bd0' | |
2586 brainixStudy = '27f7126f-4f66fb14-03f4081b-f9341db2-53925988' | |
2587 brainixEpi = '2ac1316d-3e432022-62eabff2-c59f5475-9b1ac3f8' | |
2588 | |
2589 with open(GetDatabasePath('HelloWorld.pdf'), 'rb') as f: | |
2590 pdf = f.read() | |
2591 | |
2592 i = DoPost(_REMOTE, '/tools/create-dicom', | |
2593 json.dumps({ | |
2594 'Tags' : { | |
2595 'PatientName' : 'Jodogne', | |
2596 'Modality' : 'CT', | |
2597 }, | |
2598 'Content' : 'data:application/pdf;base64,' + base64.b64encode(pdf) | |
2599 })) | |
2600 | |
2601 self.assertEqual('Jodogne', DoGet(_REMOTE, '/instances/%s/content/PatientName' % i['ID']).strip()) | |
2602 self.assertEqual('OT', DoGet(_REMOTE, '/instances/%s/content/Modality' % i['ID']).strip()) | |
2603 | |
2604 b = DoGet(_REMOTE, '/instances/%s/content/0042-0011' % i['ID']) | |
2605 self.assertEqual(len(b), len(pdf) + 1) | |
2606 self.assertEqual(ComputeMD5(b), ComputeMD5(pdf + '\0')) | |
2607 | |
2608 self.assertRaises(Exception, lambda: DoPost(_REMOTE, '/tools/create-dicom', | |
2609 json.dumps({ | |
2610 'Parent' : brainixPatient, | |
2611 'Tags' : { | |
2612 'PatientName' : 'Jodogne', | |
2613 } | |
2614 }))) | |
2615 | |
2616 i = DoPost(_REMOTE, '/tools/create-dicom', | |
2617 json.dumps({ | |
2618 'Parent' : brainixPatient, | |
2619 'Tags' : { 'StudyDescription' : 'PDF^Patient' }, | |
2620 'Content' : 'data:application/pdf;base64,' + base64.b64encode(pdf) | |
2621 })) | |
2622 | |
2623 self.assertEqual(brainixPatient, DoGet(_REMOTE, '/instances/%s/patient' % i['ID'])['ID']) | |
2624 | |
2625 i = DoPost(_REMOTE, '/tools/create-dicom', | |
2626 json.dumps({ | |
2627 'Parent' : brainixStudy, | |
2628 'Tags' : { 'SeriesDescription' : 'PDF^Study' }, | |
2629 'Content' : 'data:application/pdf;base64,' + base64.b64encode(pdf) | |
2630 })) | |
2631 | |
2632 self.assertEqual(brainixStudy, DoGet(_REMOTE, '/instances/%s/study' % i['ID'])['ID']) | |
2633 | |
2634 i = DoPost(_REMOTE, '/tools/create-dicom', | |
2635 json.dumps({ | |
2636 'Parent' : brainixEpi, | |
37 | 2637 'Tags' : { 'SpecificCharacterSet' : 'ISO_IR 13' }, |
36 | 2638 'Content' : 'data:application/pdf;base64,' + base64.b64encode(pdf) |
2639 })) | |
2640 | |
2641 self.assertEqual(brainixEpi, DoGet(_REMOTE, '/instances/%s/series' % i['ID'])['ID']) | |
2642 | |
2643 b = DoGet(_REMOTE, '/instances/%s/pdf' % i['ID']) | |
2644 self.assertEqual(len(b), len(pdf)) | |
2645 self.assertEqual(ComputeMD5(b), ComputeMD5(pdf)) | |
2646 | |
2647 self.assertRaises(Exception, lambda: DoGet(_REMOTE, '/instances/%s/pdf' % brainixInstance)) | |
38 | 2648 |
2649 | |
2650 def test_create_series(self): | |
2651 i = DoPost(_REMOTE, '/tools/create-dicom', | |
2652 json.dumps({ | |
2653 'Tags' : { | |
40 | 2654 'SpecificCharacterSet' : 'ISO_IR 100', |
2655 'PatientName' : 'Sébastien Jodogne', | |
38 | 2656 'Modality' : 'CT', |
2657 }, | |
2658 'Content' : [ | |
40 | 2659 { |
2660 'Content': 'data:image/png;base64,iVBORw0KGgoAAAANSUhEUgAAAAUAAAAFCAYAAACNbyblAAAAHElEQVQI12P4//8/w38GIAXDIBKE0DHxgljNBAAO9TXL0Y4OHwAAAABJRU5ErkJggg==', # red dot in RGBA | |
2661 'Tags' : { 'ImageComments' : 'Tutu' } | |
2662 }, | |
38 | 2663 'data:image/png;base64,iVBORw0KGgoAAAANSUhEUgAAABAAAAAQCAYAAAAf8/9hAAAAoUlEQVQ4jZ2SWw3EIBREjwUsYAELa2EtoAULFUCyXAtroRZqoRbox254BdLC/DZnZjoXWJFgCDg8egW2CBEhEnDzyRk+Ecxz2KP/0AL8S99T+jQccAVs22qKwAuPuq0uyNg9cPLh3am+pe/dkHLZtqJHj6vXJrZ7nvzvxxgemXgUwnGfXqpee09mUwp8m022OYP6bLF7mVuVe0y/umxinsAXRd9z0k1ubWsAAAAASUVORK5CYII=', |
2664 ] | |
2665 })) | |
2666 | |
2667 s = DoGet(_REMOTE, i['Path']) | |
2668 self.assertEqual('Series', s['Type']) | |
2669 self.assertEqual(s['ID'], i['ID']) | |
2670 self.assertEqual(2, len(s['Instances'])) | |
39 | 2671 self.assertEqual(2, s['ExpectedNumberOfInstances']) |
2672 self.assertEqual('Complete', s['Status']) | |
40 | 2673 |
2674 a = DoGet(_REMOTE, '/instances/%s/tags?simplify' % s['Instances'][0]) | |
2675 b = DoGet(_REMOTE, '/instances/%s/tags?simplify' % s['Instances'][1]) | |
2676 self.assertTrue('ImageComments' in a or 'ImageComments' in b) | |
2677 if 'ImageComments' in a: | |
2678 self.assertEqual('Tutu', a['ImageComments']) | |
2679 else: | |
2680 self.assertEqual('Tutu', b['ImageComments']) | |
2681 | |
2682 patient = DoGet(_REMOTE, '/instances/%s/patient' % s['Instances'][0]) | |
2683 self.assertEqual(patient['MainDicomTags']['PatientName'].encode('utf-8'), | |
2684 'Sébastien Jodogne') | |
47 | 2685 |
2686 | |
2687 def test_create_binary(self): | |
2688 binary = ''.join(map(chr, range(256))) | |
2689 encoded = 'data:application/octet-stream;base64,' + base64.b64encode(binary) | |
2690 tags = { | |
2691 'PatientName' : 'Jodogne', | |
2692 '8899-8899' : encoded | |
2693 } | |
2694 | |
2695 i = DoPost(_REMOTE, '/tools/create-dicom', | |
2696 json.dumps({ | |
266 | 2697 'Tags' : tags, |
2698 'PrivateCreator' : 'TestBinary', | |
47 | 2699 })) |
2700 | |
2701 self.assertEqual('Jodogne', DoGet(_REMOTE, '/instances/%s/content/PatientName' % i['ID']).strip()) | |
2702 self.assertEqual(binary, DoGet(_REMOTE, '/instances/%s/content/8899-8899' % i['ID']).strip()) | |
2703 | |
2704 i = DoPost(_REMOTE, '/tools/create-dicom', | |
2705 json.dumps({ | |
2706 'InterpretBinaryTags' : False, | |
266 | 2707 'Tags' : tags, |
2708 'PrivateCreator' : 'TestBinary', | |
47 | 2709 })) |
2710 | |
2711 self.assertEqual('Jodogne', DoGet(_REMOTE, '/instances/%s/content/PatientName' % i['ID']).strip()) | |
2712 self.assertEqual(encoded, DoGet(_REMOTE, '/instances/%s/content/8899-8899' % i['ID'])[0:-1]) | |
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2713 |
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2714 |
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2715 def test_patient_ids_collision(self): |
e4352463ff74
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diff
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2716 # Upload 3 instances from 3 different studies, but with the |
e4352463ff74
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2717 # same PatientID |
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2718 for i in range(3): |
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diff
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2719 UploadInstance(_REMOTE, 'PatientIdsCollision/Image%d.dcm' % (i + 1)) |
e4352463ff74
test_patient_ids_collision
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
47
diff
changeset
|
2720 |
e4352463ff74
test_patient_ids_collision
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
47
diff
changeset
|
2721 a = DoPost(_REMOTE, '/tools/find', { 'Level' : 'Patient', |
e4352463ff74
test_patient_ids_collision
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
47
diff
changeset
|
2722 'Query' : { 'PatientName' : '*' }}) |
e4352463ff74
test_patient_ids_collision
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
47
diff
changeset
|
2723 self.assertEqual(1, len(a)) |
e4352463ff74
test_patient_ids_collision
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
47
diff
changeset
|
2724 self.assertEqual('COMMON', DoGet(_REMOTE, '/patients/%s' % a[0]) ['MainDicomTags']['PatientID']) |
e4352463ff74
test_patient_ids_collision
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
47
diff
changeset
|
2725 |
e4352463ff74
test_patient_ids_collision
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
47
diff
changeset
|
2726 a = DoPost(_REMOTE, '/tools/find', { 'Level' : 'Study', |
e4352463ff74
test_patient_ids_collision
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
47
diff
changeset
|
2727 'CaseSensitive' : True, |
e4352463ff74
test_patient_ids_collision
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
47
diff
changeset
|
2728 'Query' : { 'PatientName' : 'FOO\\HELLO' }}) |
e4352463ff74
test_patient_ids_collision
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
47
diff
changeset
|
2729 self.assertEqual(2, len(a)) |
e4352463ff74
test_patient_ids_collision
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
47
diff
changeset
|
2730 |
e4352463ff74
test_patient_ids_collision
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
47
diff
changeset
|
2731 a = DoPost(_REMOTE, '/tools/find', { 'Level' : 'Series', |
e4352463ff74
test_patient_ids_collision
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
47
diff
changeset
|
2732 'CaseSensitive' : False, |
e4352463ff74
test_patient_ids_collision
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
47
diff
changeset
|
2733 'Query' : { 'PatientName' : 'Foo' }}) |
e4352463ff74
test_patient_ids_collision
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
47
diff
changeset
|
2734 self.assertEqual(1, len(a)) |
e4352463ff74
test_patient_ids_collision
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
47
diff
changeset
|
2735 self.assertEqual('FOO^SERIES', DoGet(_REMOTE, '/series/%s/study' % a[0]) ['MainDicomTags']['StudyDescription']) |
e4352463ff74
test_patient_ids_collision
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
47
diff
changeset
|
2736 self.assertEqual('FOO', DoGet(_REMOTE, '/series/%s/study' % a[0]) ['PatientMainDicomTags']['PatientName']) |
e4352463ff74
test_patient_ids_collision
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
47
diff
changeset
|
2737 self.assertEqual('COMMON', DoGet(_REMOTE, '/series/%s/study' % a[0]) ['PatientMainDicomTags']['PatientID']) |
e4352463ff74
test_patient_ids_collision
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
47
diff
changeset
|
2738 |
e4352463ff74
test_patient_ids_collision
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
47
diff
changeset
|
2739 a = DoPost(_REMOTE, '/tools/find', { 'Level' : 'Study', |
e4352463ff74
test_patient_ids_collision
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
47
diff
changeset
|
2740 'Query' : { 'PatientName' : '*' }}) |
e4352463ff74
test_patient_ids_collision
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
47
diff
changeset
|
2741 self.assertEqual(3, len(a)) |
e4352463ff74
test_patient_ids_collision
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
47
diff
changeset
|
2742 d = map(lambda x: DoGet(_REMOTE, '/studies/%s' % x) ['MainDicomTags']['StudyDescription'], a) |
e4352463ff74
test_patient_ids_collision
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
47
diff
changeset
|
2743 self.assertTrue('FOO^SERIES' in d) |
e4352463ff74
test_patient_ids_collision
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
47
diff
changeset
|
2744 self.assertTrue('HELLO^SERIES' in d) |
e4352463ff74
test_patient_ids_collision
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
47
diff
changeset
|
2745 self.assertTrue('WORLD^SERIES' in d) |
e4352463ff74
test_patient_ids_collision
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
47
diff
changeset
|
2746 |
e4352463ff74
test_patient_ids_collision
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
47
diff
changeset
|
2747 d = map(lambda x: DoGet(_REMOTE, '/studies/%s' % x) ['PatientMainDicomTags']['PatientID'], a) |
e4352463ff74
test_patient_ids_collision
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
47
diff
changeset
|
2748 self.assertEqual(1, len(set(d))) |
e4352463ff74
test_patient_ids_collision
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
47
diff
changeset
|
2749 self.assertEqual('COMMON', d[0]) |
e4352463ff74
test_patient_ids_collision
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
47
diff
changeset
|
2750 |
e4352463ff74
test_patient_ids_collision
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
47
diff
changeset
|
2751 for i in a: |
e4352463ff74
test_patient_ids_collision
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
47
diff
changeset
|
2752 d = DoGet(_REMOTE, '/studies/%s' % i) ['MainDicomTags']['StudyDescription'] |
e4352463ff74
test_patient_ids_collision
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
47
diff
changeset
|
2753 p = DoGet(_REMOTE, '/studies/%s' % i) ['PatientMainDicomTags']['PatientName'] |
e4352463ff74
test_patient_ids_collision
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
47
diff
changeset
|
2754 self.assertEqual('%s^SERIES' % p, d) |
49
e7f9b8199545
test_bitbucket_issue_4
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
48
diff
changeset
|
2755 |
e7f9b8199545
test_bitbucket_issue_4
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
48
diff
changeset
|
2756 |
e7f9b8199545
test_bitbucket_issue_4
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
48
diff
changeset
|
2757 def test_bitbucket_issue_4(self): |
e7f9b8199545
test_bitbucket_issue_4
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
48
diff
changeset
|
2758 UploadInstance(_REMOTE, 'Brainix/Epi/IM-0001-0001.dcm') |
e7f9b8199545
test_bitbucket_issue_4
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
48
diff
changeset
|
2759 UploadInstance(_REMOTE, 'Brainix/Epi/IM-0001-0002.dcm') |
e7f9b8199545
test_bitbucket_issue_4
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
48
diff
changeset
|
2760 UploadInstance(_REMOTE, 'Brainix/Epi/IM-0001-0003.dcm') |
e7f9b8199545
test_bitbucket_issue_4
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
48
diff
changeset
|
2761 UploadInstance(_REMOTE, 'Formats/Jpeg.dcm') |
e7f9b8199545
test_bitbucket_issue_4
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
48
diff
changeset
|
2762 UploadInstance(_REMOTE, 'Formats/JpegLossless.dcm') |
e7f9b8199545
test_bitbucket_issue_4
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
48
diff
changeset
|
2763 UploadInstance(_REMOTE, 'Formats/Rle.dcm') |
e7f9b8199545
test_bitbucket_issue_4
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
48
diff
changeset
|
2764 |
e7f9b8199545
test_bitbucket_issue_4
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
48
diff
changeset
|
2765 self.assertEqual(0, len(DoGet(_LOCAL, '/instances'))) |
e7f9b8199545
test_bitbucket_issue_4
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
48
diff
changeset
|
2766 self.assertEqual(6, len(DoGet(_REMOTE, '/instances'))) |
e7f9b8199545
test_bitbucket_issue_4
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
48
diff
changeset
|
2767 |
e7f9b8199545
test_bitbucket_issue_4
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
48
diff
changeset
|
2768 p = DoGet(_REMOTE, '/patients') |
e7f9b8199545
test_bitbucket_issue_4
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
48
diff
changeset
|
2769 self.assertEqual(2, len(p)) |
e7f9b8199545
test_bitbucket_issue_4
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
48
diff
changeset
|
2770 i1 = map(lambda x: x['ID'], DoGet(_REMOTE, '/patients/%s/instances' % p[0])) |
e7f9b8199545
test_bitbucket_issue_4
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
48
diff
changeset
|
2771 i2 = map(lambda x: x['ID'], DoGet(_REMOTE, '/patients/%s/instances' % p[1])) |
e7f9b8199545
test_bitbucket_issue_4
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
48
diff
changeset
|
2772 self.assertEqual(3, len(i1)) |
e7f9b8199545
test_bitbucket_issue_4
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
48
diff
changeset
|
2773 self.assertEqual(3, len(i2)) |
e7f9b8199545
test_bitbucket_issue_4
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
48
diff
changeset
|
2774 |
e7f9b8199545
test_bitbucket_issue_4
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
48
diff
changeset
|
2775 j = DoPost(_REMOTE, '/modalities/orthanctest/store', i2[0:1] + i1 + i2[1:3]) |
e7f9b8199545
test_bitbucket_issue_4
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
48
diff
changeset
|
2776 |
e7f9b8199545
test_bitbucket_issue_4
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
48
diff
changeset
|
2777 self.assertEqual(6, len(DoGet(_LOCAL, '/instances'))) |
50
8de63d56cf11
test_create_sequence
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
49
diff
changeset
|
2778 |
8de63d56cf11
test_create_sequence
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
49
diff
changeset
|
2779 |
8de63d56cf11
test_create_sequence
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
49
diff
changeset
|
2780 def test_create_sequence(self): |
8de63d56cf11
test_create_sequence
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
49
diff
changeset
|
2781 i = DoPost(_REMOTE, '/tools/create-dicom', |
8de63d56cf11
test_create_sequence
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
49
diff
changeset
|
2782 json.dumps({ |
8de63d56cf11
test_create_sequence
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
49
diff
changeset
|
2783 'Tags' : { |
8de63d56cf11
test_create_sequence
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
49
diff
changeset
|
2784 'SpecificCharacterSet': 'ISO_IR 100', # Encode using Latin1 |
8de63d56cf11
test_create_sequence
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
49
diff
changeset
|
2785 'PatientName': 'Jodogne^', |
51
264a20a0276d
test_modify_sequence
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
50
diff
changeset
|
2786 'ReferencedStudySequence': GenerateTestSequence(), |
50
8de63d56cf11
test_create_sequence
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
49
diff
changeset
|
2787 } |
8de63d56cf11
test_create_sequence
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
49
diff
changeset
|
2788 }))['ID'] |
8de63d56cf11
test_create_sequence
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
49
diff
changeset
|
2789 |
8de63d56cf11
test_create_sequence
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
49
diff
changeset
|
2790 self.assertEqual('Jodogne^', DoGet(_REMOTE, '/instances/%s/content/PatientName' % i)) |
8de63d56cf11
test_create_sequence
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
49
diff
changeset
|
2791 self.assertEqual('Hello^', DoGet(_REMOTE, '/instances/%s/content/ReferencedStudySequence/0/StudyDescription' % i)) |
8de63d56cf11
test_create_sequence
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
49
diff
changeset
|
2792 self.assertEqual('Toto', DoGet(_REMOTE, '/instances/%s/content/ReferencedStudySequence/0/ReferencedStudySequence/0/StudyDescription' % i)) |
8de63d56cf11
test_create_sequence
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
49
diff
changeset
|
2793 self.assertEqual('Tata', DoGet(_REMOTE, '/instances/%s/content/ReferencedStudySequence/0/ReferencedStudySequence/1/StudyDescription' % i)) |
8de63d56cf11
test_create_sequence
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
49
diff
changeset
|
2794 self.assertEqual(u'Sébastien^'.encode('latin-1'), |
8de63d56cf11
test_create_sequence
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
49
diff
changeset
|
2795 DoGet(_REMOTE, '/instances/%s/content/ReferencedStudySequence/1/StudyDescription' % i)) |
51
264a20a0276d
test_modify_sequence
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
50
diff
changeset
|
2796 |
264a20a0276d
test_modify_sequence
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
50
diff
changeset
|
2797 |
264a20a0276d
test_modify_sequence
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
50
diff
changeset
|
2798 def test_modify_sequence(self): |
264a20a0276d
test_modify_sequence
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
50
diff
changeset
|
2799 i = UploadInstance(_REMOTE, 'PrivateTags.dcm')['ID'] |
264a20a0276d
test_modify_sequence
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
50
diff
changeset
|
2800 self.assertRaises(Exception, lambda: DoGet(_REMOTE, '/instances/%s/content/ReferencedStudySequence' % i)) |
264a20a0276d
test_modify_sequence
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
50
diff
changeset
|
2801 |
264a20a0276d
test_modify_sequence
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
50
diff
changeset
|
2802 j = DoPost(_REMOTE, '/instances/%s/modify' % i, |
264a20a0276d
test_modify_sequence
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
50
diff
changeset
|
2803 json.dumps({ |
264a20a0276d
test_modify_sequence
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
50
diff
changeset
|
2804 "Replace" : { |
264a20a0276d
test_modify_sequence
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
50
diff
changeset
|
2805 "PatientName" : "hello", |
264a20a0276d
test_modify_sequence
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
50
diff
changeset
|
2806 'ReferencedStudySequence': GenerateTestSequence(), |
264a20a0276d
test_modify_sequence
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
50
diff
changeset
|
2807 }, |
264a20a0276d
test_modify_sequence
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
50
diff
changeset
|
2808 }), |
264a20a0276d
test_modify_sequence
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
50
diff
changeset
|
2809 'application/json') |
264a20a0276d
test_modify_sequence
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
50
diff
changeset
|
2810 j = DoPost(_REMOTE, '/instances', j, 'application/dicom')['ID'] |
264a20a0276d
test_modify_sequence
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
50
diff
changeset
|
2811 DoDelete(_REMOTE, '/instances/%s' % i) |
264a20a0276d
test_modify_sequence
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
50
diff
changeset
|
2812 |
52 | 2813 self.assertEqual(2, len(DoGet(_REMOTE, '/instances/%s/content/ReferencedStudySequence' % j))) |
2814 | |
2815 | |
2816 def test_compression(self): | |
2817 i = UploadInstance(_REMOTE, 'DummyCT.dcm')['ID'] | |
2818 | |
2819 data = DoGetRaw(_REMOTE, '/instances/%s/attachments/dicom-as-json/data' % i)[1] | |
2820 | |
2821 # "StorageCompression" is enabled in the Orthanc to be tested, | |
2822 # uncompress the data before running the test | |
2823 if DoGet(_REMOTE, '/instances/%s/attachments/dicom-as-json/is-compressed' % i) != 0: | |
2824 DoPost(_REMOTE, '/instances/%s/attachments/dicom-as-json/uncompress' % i) | |
2825 | |
2826 cs = DoGet(_REMOTE, '/statistics')['TotalDiskSize'] | |
2827 us = DoGet(_REMOTE, '/statistics')['TotalUncompressedSize'] | |
2828 size = DoGet(_REMOTE, '/instances/%s/attachments/dicom-as-json/size' % i) | |
2829 md5 = DoGet(_REMOTE, '/instances/%s/attachments/dicom-as-json/md5' % i) | |
2830 self.assertEqual(data, DoGetRaw(_REMOTE, '/instances/%s/attachments/dicom-as-json/compressed-data' % i)[1]) | |
2831 self.assertEqual(md5, DoGet(_REMOTE, '/instances/%s/attachments/dicom-as-json/compressed-md5' % i)) | |
2832 self.assertEqual(size, DoGet(_REMOTE, '/instances/%s/attachments/dicom-as-json/compressed-size' % i)) | |
2833 | |
2834 ops = DoGet(_REMOTE, '/instances/%s/attachments/dicom-as-json' % i) | |
2835 self.assertTrue('compress' in ops) | |
2836 self.assertTrue('uncompress' in ops) | |
2837 self.assertTrue('is-compressed' in ops) | |
2838 self.assertEqual(0, DoGet(_REMOTE, '/instances/%s/attachments/dicom-as-json/is-compressed' % i)) | |
2839 DoPost(_REMOTE, '/instances/%s/attachments/dicom-as-json/verify-md5' % i) | |
2840 | |
2841 DoPost(_REMOTE, '/instances/%s/attachments/dicom-as-json/compress' % i) | |
2842 DoPost(_REMOTE, '/instances/%s/attachments/dicom-as-json/verify-md5' % i) | |
2843 self.assertEqual(1, DoGet(_REMOTE, '/instances/%s/attachments/dicom-as-json/is-compressed' % i)) | |
2844 self.assertLess(cs, DoGet(_REMOTE, '/statistics')['TotalDiskSize']) | |
2845 self.assertEqual(us, DoGet(_REMOTE, '/statistics')['TotalUncompressedSize']) | |
2846 self.assertGreater(len(data), len(DoGetRaw(_REMOTE, '/instances/%s/attachments/dicom-as-json/compressed-data' % i)[1])) | |
2847 self.assertGreater(size, DoGet(_REMOTE, '/instances/%s/attachments/dicom-as-json/compressed-size' % i)) | |
2848 self.assertEqual(size, DoGet(_REMOTE, '/instances/%s/attachments/dicom-as-json/size' % i)) | |
2849 self.assertEqual(md5, DoGet(_REMOTE, '/instances/%s/attachments/dicom-as-json/md5' % i)) | |
2850 self.assertNotEqual(md5, DoGet(_REMOTE, '/instances/%s/attachments/dicom-as-json/compressed-md5' % i)) | |
2851 | |
2852 DoPost(_REMOTE, '/instances/%s/attachments/dicom-as-json/uncompress' % i) | |
2853 DoPost(_REMOTE, '/instances/%s/attachments/dicom-as-json/verify-md5' % i) | |
2854 self.assertEqual(0, DoGet(_REMOTE, '/instances/%s/attachments/dicom-as-json/is-compressed' % i)) | |
2855 self.assertEqual(data, DoGetRaw(_REMOTE, '/instances/%s/attachments/dicom-as-json/compressed-data' % i)[1]) | |
2856 self.assertEqual(size, DoGet(_REMOTE, '/instances/%s/attachments/dicom-as-json/compressed-size' % i)) | |
2857 self.assertEqual(size, DoGet(_REMOTE, '/instances/%s/attachments/dicom-as-json/size' % i)) | |
2858 self.assertEqual(md5, DoGet(_REMOTE, '/instances/%s/attachments/dicom-as-json/md5' % i)) | |
2859 self.assertEqual(md5, DoGet(_REMOTE, '/instances/%s/attachments/dicom-as-json/compressed-md5' % i)) | |
2860 self.assertEqual(cs, DoGet(_REMOTE, '/statistics')['TotalDiskSize']) | |
2861 self.assertEqual(us, DoGet(_REMOTE, '/statistics')['TotalUncompressedSize']) | |
53 | 2862 |
2863 | |
2864 def test_ordered_slices(self): | |
2865 i = UploadInstance(_REMOTE, 'Multiframe.dcm')['ID'] | |
2866 s = DoGet(_REMOTE, '/instances/%s' % i)['ParentSeries'] | |
2867 o = DoGet(_REMOTE, '/series/%s/ordered-slices' % s) | |
2868 self.assertEqual('Sequence', o['Type']) | |
2869 self.assertEqual(1, len(o['Dicom'])) | |
2870 self.assertEqual('/instances/9e05eb0a-18b6268c-e0d36085-8ddab517-3b5aec02/file', o['Dicom'][0]) | |
2871 self.assertEqual(76, len(o['Slices'])) | |
2872 for j in range(76): | |
2873 self.assertEqual('/instances/9e05eb0a-18b6268c-e0d36085-8ddab517-3b5aec02/frames/%d' % j, o['Slices'][j]) | |
2874 | |
68 | 2875 self.assertEqual(1, len(o['SlicesShort'])) |
2876 self.assertEqual('9e05eb0a-18b6268c-e0d36085-8ddab517-3b5aec02', o['SlicesShort'][0][0]) | |
2877 self.assertEqual(0, o['SlicesShort'][0][1]) | |
2878 self.assertEqual(76, o['SlicesShort'][0][2]) | |
2879 | |
53 | 2880 i = UploadInstance(_REMOTE, 'Brainix/Epi/IM-0001-0001.dcm')['ID'] |
2881 j = UploadInstance(_REMOTE, 'Brainix/Epi/IM-0001-0002.dcm')['ID'] | |
2882 k = UploadInstance(_REMOTE, 'Brainix/Epi/IM-0001-0003.dcm')['ID'] | |
2883 s = DoGet(_REMOTE, '/instances/%s' % i)['ParentSeries'] | |
2884 o = DoGet(_REMOTE, '/series/%s/ordered-slices' % s) | |
2885 | |
2886 self.assertEqual('Volume', o['Type']) | |
2887 self.assertEqual(3, len(o['Dicom'])) | |
2888 self.assertEqual(3, len(o['Slices'])) | |
2889 self.assertEqual('/instances/%s/file' % i, o['Dicom'][2]) | |
2890 self.assertEqual('/instances/%s/file' % j, o['Dicom'][1]) | |
2891 self.assertEqual('/instances/%s/file' % k, o['Dicom'][0]) | |
2892 self.assertEqual('/instances/%s/frames/0' % i, o['Slices'][2]) | |
2893 self.assertEqual('/instances/%s/frames/0' % j, o['Slices'][1]) | |
2894 self.assertEqual('/instances/%s/frames/0' % k, o['Slices'][0]) | |
2895 | |
68 | 2896 self.assertEqual(3, len(o['SlicesShort'])) |
2897 self.assertEqual(k, o['SlicesShort'][0][0]) | |
2898 self.assertEqual(0, o['SlicesShort'][0][1]) | |
2899 self.assertEqual(1, o['SlicesShort'][0][2]) | |
2900 self.assertEqual(j, o['SlicesShort'][1][0]) | |
2901 self.assertEqual(0, o['SlicesShort'][1][1]) | |
2902 self.assertEqual(1, o['SlicesShort'][1][2]) | |
2903 self.assertEqual(i, o['SlicesShort'][2][0]) | |
2904 self.assertEqual(0, o['SlicesShort'][2][1]) | |
2905 self.assertEqual(1, o['SlicesShort'][2][2]) | |
2906 | |
53 | 2907 i = UploadInstance(_REMOTE, 'Beaufix/IM-0001-0001.dcm')['ID'] |
2908 j = UploadInstance(_REMOTE, 'Beaufix/IM-0001-0002.dcm')['ID'] | |
2909 s = DoGet(_REMOTE, '/instances/%s' % i)['ParentSeries'] | |
2910 o = DoGet(_REMOTE, '/series/%s/ordered-slices' % s) | |
2911 | |
2912 self.assertEqual('Sequence', o['Type']) | |
2913 self.assertEqual(2, len(o['Dicom'])) | |
2914 self.assertEqual(2, len(o['Slices'])) | |
2915 self.assertEqual('/instances/%s/file' % i, o['Dicom'][0]) | |
2916 self.assertEqual('/instances/%s/file' % j, o['Dicom'][1]) | |
2917 self.assertEqual('/instances/%s/frames/0' % i, o['Slices'][0]) | |
2918 self.assertEqual('/instances/%s/frames/0' % j, o['Slices'][1]) | |
54
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diff
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|
2919 |
68 | 2920 self.assertEqual(2, len(o['SlicesShort'])) |
2921 self.assertEqual(i, o['SlicesShort'][0][0]) | |
2922 self.assertEqual(0, o['SlicesShort'][0][1]) | |
2923 self.assertEqual(1, o['SlicesShort'][0][2]) | |
2924 self.assertEqual(j, o['SlicesShort'][1][0]) | |
2925 self.assertEqual(0, o['SlicesShort'][1][1]) | |
2926 self.assertEqual(1, o['SlicesShort'][1][2]) | |
2927 | |
2928 | |
54
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diff
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|
2929 |
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test_incoming_movescu_accession
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diff
changeset
|
2930 def test_incoming_movescu_accession(self): |
c5f8a6b0d85e
test_incoming_movescu_accession
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diff
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|
2931 UploadInstance(_REMOTE, 'Knee/T1/IM-0001-0001.dcm') |
c5f8a6b0d85e
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2932 |
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2933 # No matching patient, so no job is created |
54
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diff
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2934 self.assertEqual(0, len(DoGet(_LOCAL, '/patients'))) |
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diff
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2935 CallMoveScu([ '--study', '-k', '0008,0052=STUDY', '-k', 'AccessionNumber=nope' ]) |
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diff
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2936 self.assertEqual(0, len(DoGet(_LOCAL, '/patients'))) |
c5f8a6b0d85e
test_incoming_movescu_accession
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|
2937 CallMoveScu([ '--study', '-k', '0008,0052=PATIENT', '-k', 'AccessionNumber=A10003245599' ]) |
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diff
changeset
|
2938 self.assertEqual(0, len(DoGet(_LOCAL, '/patients'))) |
137
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2939 |
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|
2940 # 1 Matching patient, track the job |
138 | 2941 self.assertTrue(MonitorJob(_REMOTE, lambda: CallMoveScu([ |
2942 '--study', | |
2943 '-k', '0008,0052=STUDY', | |
2944 '-k', 'AccessionNumber=A10003245599' | |
2945 ]))) | |
137
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2946 |
54
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diff
changeset
|
2947 self.assertEqual(1, len(DoGet(_LOCAL, '/patients'))) |
c5f8a6b0d85e
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|
2948 |
55 | 2949 |
2950 def test_dicom_to_json(self): | |
2951 i = UploadInstance(_REMOTE, 'PrivateMDNTags.dcm')['ID'] | |
60
cd3c7f70f139
test backward compatibility with Orthanc 0.9.4
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diff
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2952 j = UploadInstance(_REMOTE, 'PrivateTags.dcm')['ID'] |
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test backward compatibility with Orthanc 0.9.4
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2953 |
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|
2954 t = DoGet(_REMOTE, '/instances/%s/tags?simplify' % i) |
cd3c7f70f139
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diff
changeset
|
2955 with open(GetDatabasePath('PrivateMDNTagsSimplify.json'), 'r') as f: |
80
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fix test against dcmtk 3.6.1
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diff
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2956 self.assertTrue(CompareTags(t, json.loads(f.read()), [ |
123 | 2957 # Tags for compatibility with DCMTK 3.6.0 |
2958 'RETIRED_OtherPatientIDs', | |
2959 'OtherPatientIDs', | |
2960 'ACR_NEMA_2C_VariablePixelDataGroupLength', | |
80
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fix test against dcmtk 3.6.1
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2961 ])) |
55 | 2962 |
2963 t = DoGet(_REMOTE, '/instances/%s/tags' % i) | |
2964 with open(GetDatabasePath('PrivateMDNTagsFull.json'), 'r') as f: | |
87
4b24faec842b
test_reconstruct_json2 + test_private_tags
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diff
changeset
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2965 self.assertTrue(CompareTags(t, json.loads(f.read()), [ |
4b24faec842b
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2966 ])) |
55 | 2967 |
60
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diff
changeset
|
2968 t = DoGet(_REMOTE, '/instances/%s/tags?simplify' % j) |
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diff
changeset
|
2969 with open(GetDatabasePath('PrivateTagsSimplify.json'), 'r') as f: |
80
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2970 self.assertTrue(CompareTags(t, json.loads(f.read()), [ |
8466dbfcb22b
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|
2971 ])) |
60
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2972 |
372
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fix for DCMTK 3.6.6
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diff
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|
2973 |
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fix for DCMTK 3.6.6
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diff
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|
2974 # NB: To get the actual value of the "tags" JSON file, use the |
e9b03d8f3b78
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|
2975 # following command: |
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|
2976 # $ curl http://alice:orthanctest@localhost:8042/instances/d29ead49-43e8601d-72f1e922-7de676ee-ea77c2b4/tags |
60
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changeset
|
2977 t = DoGet(_REMOTE, '/instances/%s/tags' % j) |
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diff
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|
2978 with open(GetDatabasePath('PrivateTagsFull.json'), 'r') as f: |
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diff
changeset
|
2979 a = json.loads(f.read()) |
65
09fc27e0899a
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64
diff
changeset
|
2980 aa = json.dumps(a).replace('2e+022', '2e+22') |
372
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diff
changeset
|
2981 tt = (json.dumps(t) |
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|
2982 .replace('2e+022', '2e+22') |
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|
2983 # The "IllegalPrivatePixelSequence" tag was introduced in DCMTK 3.6.6 dictionary |
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|
2984 .replace('IllegalPrivatePixelSequence', 'Unknown Tag & Data')) |
65
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diff
changeset
|
2985 self.assertEqual(aa, tt) |
57 | 2986 |
2987 | |
2988 def test_batch_archive(self): | |
2989 UploadInstance(_REMOTE, 'Knee/T1/IM-0001-0001.dcm') | |
2990 UploadInstance(_REMOTE, 'Knee/T1/IM-0001-0002.dcm') | |
2991 UploadInstance(_REMOTE, 'Knee/T2/IM-0001-0001.dcm') | |
2992 UploadInstance(_REMOTE, 'Knee/T2/IM-0001-0002.dcm') | |
2993 UploadInstance(_REMOTE, 'Brainix/Epi/IM-0001-0001.dcm') | |
2994 UploadInstance(_REMOTE, 'Brainix/Epi/IM-0001-0002.dcm') | |
2995 UploadInstance(_REMOTE, 'Brainix/Flair/IM-0001-0001.dcm') | |
2996 UploadInstance(_REMOTE, 'Brainix/Flair/IM-0001-0002.dcm') | |
2997 | |
2998 s = DoPost(_REMOTE, '/tools/create-archive', [ ]) | |
2999 z = zipfile.ZipFile(StringIO(s), "r") | |
3000 self.assertEqual(0, len(z.namelist())) | |
3001 | |
3002 # One patient | |
3003 s = DoPost(_REMOTE, '/tools/create-archive', [ 'ca29faea-b6a0e17f-067743a1-8b778011-a48b2a17' ]) | |
3004 z = zipfile.ZipFile(StringIO(s), "r") | |
3005 self.assertEqual(4, len(z.namelist())) | |
3006 | |
3007 # One patient + twice its study + one series from other patient | |
3008 s = DoPost(_REMOTE, '/tools/create-archive', [ | |
3009 'ca29faea-b6a0e17f-067743a1-8b778011-a48b2a17', | |
3010 '0a9b3153-2512774b-2d9580de-1fc3dcf6-3bd83918', | |
3011 '1e2c125c-411b8e86-3f4fe68e-a7584dd3-c6da78f0' | |
3012 ]) | |
3013 z = zipfile.ZipFile(StringIO(s), "r") | |
3014 self.assertEqual(6, len(z.namelist())) | |
3015 | |
3016 # One patient + one series + one instance | |
3017 s = DoPost(_REMOTE, '/tools/create-archive', [ | |
3018 'ca29faea-b6a0e17f-067743a1-8b778011-a48b2a17', | |
3019 '1e2c125c-411b8e86-3f4fe68e-a7584dd3-c6da78f0', | |
3020 '1d429ccb-bdcc78a1-7d129d6a-ba4966ed-fe4dbd87' | |
3021 ]) | |
3022 z = zipfile.ZipFile(StringIO(s), "r") | |
3023 self.assertEqual(7, len(z.namelist())) | |
59
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|
3024 |
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diff
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|
3025 |
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test_decode_brainix_as_jpeg
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58
diff
changeset
|
3026 def test_decode_brainix_as_jpeg(self): |
84378ada15ab
test_decode_brainix_as_jpeg
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diff
changeset
|
3027 i = UploadInstance(_REMOTE, 'Brainix/Epi/IM-0001-0001.dcm')['ID'] |
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|
3028 |
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diff
changeset
|
3029 j = GetImage(_REMOTE, '/instances/%s/preview' % i) |
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|
3030 self.assertEqual('PNG', j.format) |
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diff
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|
3031 self.assertEqual(j.size[0], 256) |
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changeset
|
3032 self.assertEqual(j.size[1], 256) |
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3033 |
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|
3034 j = GetImage(_REMOTE, '/instances/%s/preview' % i, headers = { 'Accept' : '*/*' }) |
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|
3035 self.assertEqual('PNG', j.format) |
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3036 |
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|
3037 j = GetImage(_REMOTE, '/instances/%s/preview' % i, headers = { 'Accept' : 'image/*' }) |
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|
3038 self.assertEqual('PNG', j.format) |
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|
3039 |
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|
3040 j = GetImage(_REMOTE, '/instances/%s/preview' % i, headers = { 'Accept' : 'image/png' }) |
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|
3041 self.assertEqual('PNG', j.format) |
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3042 |
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|
3043 j = GetImage(_REMOTE, '/instances/%s/preview' % i, headers = { 'Accept' : 'image/jpeg' }) |
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test_decode_brainix_as_jpeg
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
58
diff
changeset
|
3044 self.assertEqual('JPEG', j.format) |
84378ada15ab
test_decode_brainix_as_jpeg
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
58
diff
changeset
|
3045 self.assertEqual(j.size[0], 256) |
84378ada15ab
test_decode_brainix_as_jpeg
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
58
diff
changeset
|
3046 self.assertEqual(j.size[1], 256) |
84378ada15ab
test_decode_brainix_as_jpeg
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
58
diff
changeset
|
3047 |
84378ada15ab
test_decode_brainix_as_jpeg
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
58
diff
changeset
|
3048 a = len(DoGet(_REMOTE, '/instances/%s/preview?quality=50' % i, headers = { 'Accept' : 'image/jpeg' })) |
84378ada15ab
test_decode_brainix_as_jpeg
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
58
diff
changeset
|
3049 b = len(DoGet(_REMOTE, '/instances/%s/preview' % i, headers = { 'Accept' : 'image/jpeg' })) |
84378ada15ab
test_decode_brainix_as_jpeg
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
58
diff
changeset
|
3050 self.assertLess(a, b) |
84378ada15ab
test_decode_brainix_as_jpeg
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
58
diff
changeset
|
3051 |
84378ada15ab
test_decode_brainix_as_jpeg
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
58
diff
changeset
|
3052 j = GetImage(_REMOTE, '/instances/%s/image-uint8' % i, headers = { 'Accept' : 'image/jpeg' }) |
84378ada15ab
test_decode_brainix_as_jpeg
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
58
diff
changeset
|
3053 self.assertEqual('JPEG', j.format) |
84378ada15ab
test_decode_brainix_as_jpeg
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
58
diff
changeset
|
3054 |
84378ada15ab
test_decode_brainix_as_jpeg
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
58
diff
changeset
|
3055 # 16bit encoding is not supported with JPEG |
84378ada15ab
test_decode_brainix_as_jpeg
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
58
diff
changeset
|
3056 self.assertRaises(Exception, lambda: GetImage(_REMOTE, '/instances/%s/image-uint16' % i, headers = { 'Accept' : 'image/jpeg' })) |
84378ada15ab
test_decode_brainix_as_jpeg
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
58
diff
changeset
|
3057 self.assertRaises(Exception, lambda: GetImage(_REMOTE, '/instances/%s/image-int16' % i, headers = { 'Accept' : 'image/jpeg' })) |
84378ada15ab
test_decode_brainix_as_jpeg
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
58
diff
changeset
|
3058 |
84378ada15ab
test_decode_brainix_as_jpeg
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
58
diff
changeset
|
3059 # No matching content type |
84378ada15ab
test_decode_brainix_as_jpeg
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
58
diff
changeset
|
3060 self.assertRaises(Exception, lambda: GetImage(_REMOTE, '/instances/%s/preview' % i, headers = { 'Accept' : 'application/pdf' })) |
69
83fd88230097
test_media_encodings
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
68
diff
changeset
|
3061 |
83fd88230097
test_media_encodings
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
68
diff
changeset
|
3062 |
83fd88230097
test_media_encodings
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
68
diff
changeset
|
3063 |
83fd88230097
test_media_encodings
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
68
diff
changeset
|
3064 def test_media_encodings(self): |
83fd88230097
test_media_encodings
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
68
diff
changeset
|
3065 ascii = UploadInstance(_REMOTE, 'Knee/T1/IM-0001-0001.dcm')['ID'] |
83fd88230097
test_media_encodings
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
68
diff
changeset
|
3066 latin1 = UploadInstance(_REMOTE, 'Brainix/Epi/IM-0001-0001.dcm')['ID'] |
83fd88230097
test_media_encodings
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
68
diff
changeset
|
3067 latin2 = UploadInstance(_REMOTE, 'MarekLatin2.dcm')['ID'] |
83fd88230097
test_media_encodings
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
68
diff
changeset
|
3068 |
83fd88230097
test_media_encodings
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
68
diff
changeset
|
3069 tmp = DoPost(_REMOTE, '/tools/create-media', [ascii,latin1,latin2]) |
83fd88230097
test_media_encodings
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
68
diff
changeset
|
3070 z = zipfile.ZipFile(StringIO(tmp), "r") |
83fd88230097
test_media_encodings
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
68
diff
changeset
|
3071 |
83fd88230097
test_media_encodings
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
68
diff
changeset
|
3072 self.assertEqual(4, len(z.namelist())) |
83fd88230097
test_media_encodings
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
68
diff
changeset
|
3073 self.assertTrue('IMAGES/IM0' in z.namelist()) |
83fd88230097
test_media_encodings
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
68
diff
changeset
|
3074 self.assertTrue('IMAGES/IM1' in z.namelist()) |
83fd88230097
test_media_encodings
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
68
diff
changeset
|
3075 self.assertTrue('IMAGES/IM2' in z.namelist()) |
83fd88230097
test_media_encodings
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
68
diff
changeset
|
3076 self.assertTrue('DICOMDIR' in z.namelist()) |
83fd88230097
test_media_encodings
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
68
diff
changeset
|
3077 |
83fd88230097
test_media_encodings
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
68
diff
changeset
|
3078 try: |
83fd88230097
test_media_encodings
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
68
diff
changeset
|
3079 os.remove('/tmp/DICOMDIR') |
83fd88230097
test_media_encodings
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
68
diff
changeset
|
3080 except: |
83fd88230097
test_media_encodings
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
68
diff
changeset
|
3081 # The file does not exist |
83fd88230097
test_media_encodings
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
68
diff
changeset
|
3082 pass |
83fd88230097
test_media_encodings
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
68
diff
changeset
|
3083 |
83fd88230097
test_media_encodings
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
68
diff
changeset
|
3084 z.extract('DICOMDIR', '/tmp') |
83fd88230097
test_media_encodings
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
68
diff
changeset
|
3085 a = subprocess.check_output([ FindExecutable('dciodvfy'), '/tmp/DICOMDIR' ], |
83fd88230097
test_media_encodings
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
68
diff
changeset
|
3086 stderr = subprocess.STDOUT).split('\n') |
83fd88230097
test_media_encodings
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
68
diff
changeset
|
3087 |
83fd88230097
test_media_encodings
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
68
diff
changeset
|
3088 a = subprocess.check_output([ FindExecutable('dcentvfy'), '/tmp/DICOMDIR' ], |
83fd88230097
test_media_encodings
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
68
diff
changeset
|
3089 stderr = subprocess.STDOUT).split('\n') |
83fd88230097
test_media_encodings
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
68
diff
changeset
|
3090 self.assertEqual(1, len(a)) |
83fd88230097
test_media_encodings
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
68
diff
changeset
|
3091 self.assertEqual('', a[0]) |
83fd88230097
test_media_encodings
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
68
diff
changeset
|
3092 |
83fd88230097
test_media_encodings
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
68
diff
changeset
|
3093 a = subprocess.check_output([ FindExecutable('dcm2xml'), '/tmp/DICOMDIR' ]) |
83fd88230097
test_media_encodings
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
68
diff
changeset
|
3094 self.assertTrue(re.search('1.3.46.670589.11.17521.5.0.3124.2008081908590448738', a) != None) |
83fd88230097
test_media_encodings
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
68
diff
changeset
|
3095 self.assertTrue(re.search('1.3.46.670589.11.0.0.11.4.2.0.8743.5.5396.2006120114333648576', a) != None) |
83fd88230097
test_media_encodings
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
68
diff
changeset
|
3096 self.assertTrue(re.search('1.2.826.0.1.3680043.2.1569.1.4.323026757.1700.1399452091.57', a) != None) |
83fd88230097
test_media_encodings
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
68
diff
changeset
|
3097 |
83fd88230097
test_media_encodings
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
68
diff
changeset
|
3098 os.remove('/tmp/DICOMDIR') |
71
48740070cbf1
TDD: tests for ongoing development of counter tags in C-Find
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
70
diff
changeset
|
3099 |
48740070cbf1
TDD: tests for ongoing development of counter tags in C-Find
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
70
diff
changeset
|
3100 |
48740070cbf1
TDD: tests for ongoing development of counter tags in C-Find
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
70
diff
changeset
|
3101 def test_findscu_counters(self): |
48740070cbf1
TDD: tests for ongoing development of counter tags in C-Find
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
70
diff
changeset
|
3102 UploadInstance(_REMOTE, 'Comunix/Ct/IM-0001-0001.dcm') |
48740070cbf1
TDD: tests for ongoing development of counter tags in C-Find
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
70
diff
changeset
|
3103 UploadInstance(_REMOTE, 'Comunix/Pet/IM-0001-0001.dcm') |
48740070cbf1
TDD: tests for ongoing development of counter tags in C-Find
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
70
diff
changeset
|
3104 UploadInstance(_REMOTE, 'Comunix/Pet/IM-0001-0002.dcm') |
48740070cbf1
TDD: tests for ongoing development of counter tags in C-Find
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
70
diff
changeset
|
3105 |
48740070cbf1
TDD: tests for ongoing development of counter tags in C-Find
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
70
diff
changeset
|
3106 i = CallFindScu([ '-k', '0008,0052=PATIENT', '-k', 'NumberOfPatientRelatedStudies' ]) |
48740070cbf1
TDD: tests for ongoing development of counter tags in C-Find
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
70
diff
changeset
|
3107 s = re.findall('\(0020,1200\).*?\[(.*?)\]', i) |
48740070cbf1
TDD: tests for ongoing development of counter tags in C-Find
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
70
diff
changeset
|
3108 self.assertEqual(1, len(s)) |
48740070cbf1
TDD: tests for ongoing development of counter tags in C-Find
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
70
diff
changeset
|
3109 self.assertTrue('1 ' in s) |
48740070cbf1
TDD: tests for ongoing development of counter tags in C-Find
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
70
diff
changeset
|
3110 |
48740070cbf1
TDD: tests for ongoing development of counter tags in C-Find
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
70
diff
changeset
|
3111 i = CallFindScu([ '-k', '0008,0052=PATIENT', '-k', 'NumberOfPatientRelatedSeries' ]) |
48740070cbf1
TDD: tests for ongoing development of counter tags in C-Find
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
70
diff
changeset
|
3112 s = re.findall('\(0020,1202\).*?\[(.*?)\]', i) |
48740070cbf1
TDD: tests for ongoing development of counter tags in C-Find
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
70
diff
changeset
|
3113 self.assertEqual(1, len(s)) |
48740070cbf1
TDD: tests for ongoing development of counter tags in C-Find
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
70
diff
changeset
|
3114 self.assertTrue('2 ' in s) |
48740070cbf1
TDD: tests for ongoing development of counter tags in C-Find
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
70
diff
changeset
|
3115 |
48740070cbf1
TDD: tests for ongoing development of counter tags in C-Find
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
70
diff
changeset
|
3116 i = CallFindScu([ '-k', '0008,0052=PATIENT', '-k', 'NumberOfPatientRelatedInstances' ]) |
48740070cbf1
TDD: tests for ongoing development of counter tags in C-Find
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
70
diff
changeset
|
3117 s = re.findall('\(0020,1204\).*?\[(.*?)\]', i) |
48740070cbf1
TDD: tests for ongoing development of counter tags in C-Find
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
70
diff
changeset
|
3118 self.assertEqual(1, len(s)) |
48740070cbf1
TDD: tests for ongoing development of counter tags in C-Find
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
70
diff
changeset
|
3119 self.assertTrue('3 ' in s) |
48740070cbf1
TDD: tests for ongoing development of counter tags in C-Find
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
70
diff
changeset
|
3120 |
48740070cbf1
TDD: tests for ongoing development of counter tags in C-Find
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
70
diff
changeset
|
3121 i = CallFindScu([ '-k', '0008,0052=STUDY', '-k', 'NumberOfStudyRelatedSeries' ]) |
48740070cbf1
TDD: tests for ongoing development of counter tags in C-Find
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
70
diff
changeset
|
3122 s = re.findall('\(0020,1206\).*?\[(.*?)\]', i) |
48740070cbf1
TDD: tests for ongoing development of counter tags in C-Find
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
70
diff
changeset
|
3123 self.assertEqual(1, len(s)) |
48740070cbf1
TDD: tests for ongoing development of counter tags in C-Find
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
70
diff
changeset
|
3124 self.assertTrue('2 ' in s) |
48740070cbf1
TDD: tests for ongoing development of counter tags in C-Find
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
70
diff
changeset
|
3125 |
48740070cbf1
TDD: tests for ongoing development of counter tags in C-Find
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
70
diff
changeset
|
3126 i = CallFindScu([ '-k', '0008,0052=STUDY', '-k', 'NumberOfStudyRelatedInstances' ]) |
48740070cbf1
TDD: tests for ongoing development of counter tags in C-Find
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
70
diff
changeset
|
3127 s = re.findall('\(0020,1208\).*?\[(.*?)\]', i) |
48740070cbf1
TDD: tests for ongoing development of counter tags in C-Find
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
70
diff
changeset
|
3128 self.assertEqual(1, len(s)) |
48740070cbf1
TDD: tests for ongoing development of counter tags in C-Find
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
70
diff
changeset
|
3129 self.assertTrue('3 ' in s) |
48740070cbf1
TDD: tests for ongoing development of counter tags in C-Find
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
70
diff
changeset
|
3130 |
48740070cbf1
TDD: tests for ongoing development of counter tags in C-Find
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
70
diff
changeset
|
3131 i = CallFindScu([ '-k', '0008,0052=SERIES', '-k', 'NumberOfSeriesRelatedInstances' ]) |
48740070cbf1
TDD: tests for ongoing development of counter tags in C-Find
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
70
diff
changeset
|
3132 s = re.findall('\(0020,1209\).*?\[(.*?)\]', i) |
48740070cbf1
TDD: tests for ongoing development of counter tags in C-Find
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
70
diff
changeset
|
3133 self.assertEqual(2, len(s)) |
48740070cbf1
TDD: tests for ongoing development of counter tags in C-Find
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
70
diff
changeset
|
3134 self.assertTrue('1 ' in s) |
48740070cbf1
TDD: tests for ongoing development of counter tags in C-Find
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
70
diff
changeset
|
3135 self.assertTrue('2 ' in s) |
48740070cbf1
TDD: tests for ongoing development of counter tags in C-Find
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
70
diff
changeset
|
3136 |
48740070cbf1
TDD: tests for ongoing development of counter tags in C-Find
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
70
diff
changeset
|
3137 i = CallFindScu([ '-k', '0008,0052=STUDY', '-k', 'ModalitiesInStudy' ]) |
48740070cbf1
TDD: tests for ongoing development of counter tags in C-Find
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
70
diff
changeset
|
3138 s = re.findall('\(0008,0061\).*?\[(.*?)\]', i) |
48740070cbf1
TDD: tests for ongoing development of counter tags in C-Find
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
70
diff
changeset
|
3139 self.assertEqual(1, len(s)) |
48740070cbf1
TDD: tests for ongoing development of counter tags in C-Find
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
70
diff
changeset
|
3140 t = map(lambda x: x.strip(), s[0].split('\\')) |
48740070cbf1
TDD: tests for ongoing development of counter tags in C-Find
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
70
diff
changeset
|
3141 self.assertTrue('PT' in t) |
48740070cbf1
TDD: tests for ongoing development of counter tags in C-Find
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
70
diff
changeset
|
3142 self.assertTrue('CT' in t) |
48740070cbf1
TDD: tests for ongoing development of counter tags in C-Find
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
70
diff
changeset
|
3143 |
48740070cbf1
TDD: tests for ongoing development of counter tags in C-Find
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
70
diff
changeset
|
3144 i = CallFindScu([ '-k', '0008,0052=STUDY', '-k', 'SOPClassesInStudy' ]) |
48740070cbf1
TDD: tests for ongoing development of counter tags in C-Find
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
70
diff
changeset
|
3145 s = re.findall('\(0008,0062\).*?\[(.*?)\]', i) |
48740070cbf1
TDD: tests for ongoing development of counter tags in C-Find
Sebastien Jodogne <s.jodogne@gmail.com>
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diff
changeset
|
3146 self.assertEqual(1, len(s)) |
176
48cc188ffb09
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am@osimis.io
parents:
175
diff
changeset
|
3147 t = map(lambda x: x.strip('\x00'), s[0].split('\\')) |
71
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TDD: tests for ongoing development of counter tags in C-Find
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70
diff
changeset
|
3148 self.assertTrue('1.2.840.10008.5.1.4.1.1.2' in t) |
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Sebastien Jodogne <s.jodogne@gmail.com>
parents:
70
diff
changeset
|
3149 self.assertTrue('1.2.840.10008.5.1.4.1.1.128' in t) |
48740070cbf1
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Sebastien Jodogne <s.jodogne@gmail.com>
parents:
70
diff
changeset
|
3150 |
48740070cbf1
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diff
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|
3151 |
78
b89af51797ff
test_decode_transfer_syntax
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parents:
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diff
changeset
|
3152 def test_decode_transfer_syntax(self): |
b89af51797ff
test_decode_transfer_syntax
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parents:
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diff
changeset
|
3153 def Check(t, md5): |
b89af51797ff
test_decode_transfer_syntax
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parents:
74
diff
changeset
|
3154 i = UploadInstance(_REMOTE, 'TransferSyntaxes/%s.dcm' % t)['ID'] |
b89af51797ff
test_decode_transfer_syntax
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
74
diff
changeset
|
3155 |
89
74b7b9aed5f8
test TransferSyntax metadata
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parents:
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diff
changeset
|
3156 if t != '1.2.840.10008.1.2': # This file has no meta header |
74b7b9aed5f8
test TransferSyntax metadata
Sebastien Jodogne <s.jodogne@gmail.com>
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87
diff
changeset
|
3157 transferSyntax = DoGet(_REMOTE, '/instances/%s/metadata/TransferSyntax' % i) |
74b7b9aed5f8
test TransferSyntax metadata
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diff
changeset
|
3158 self.assertEqual(t, transferSyntax) |
74b7b9aed5f8
test TransferSyntax metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
87
diff
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3159 |
78
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parents:
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diff
changeset
|
3160 if md5 == None: |
b89af51797ff
test_decode_transfer_syntax
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
74
diff
changeset
|
3161 self.assertRaises(Exception, lambda: DoGet(_REMOTE, '/instances/%s/preview' % i)) |
b89af51797ff
test_decode_transfer_syntax
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
74
diff
changeset
|
3162 else: |
b89af51797ff
test_decode_transfer_syntax
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
74
diff
changeset
|
3163 m = ComputeMD5(DoGet(_REMOTE, '/instances/%s/preview' % i)) |
b89af51797ff
test_decode_transfer_syntax
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
74
diff
changeset
|
3164 self.assertEqual(m, md5) |
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test_decode_transfer_syntax
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
74
diff
changeset
|
3165 |
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test_decode_transfer_syntax
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diff
changeset
|
3166 Check('1.2.840.10008.1.2.1', 'fae08d5415c4c0cd2cdbae4522408631') |
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test_decode_transfer_syntax
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
74
diff
changeset
|
3167 Check('1.2.840.10008.1.2.2', 'f3d9784768b8feb54d6a50b6d5c37682') |
323 | 3168 Check('1.2.840.10008.1.2.4.50', '496326046974eea718dbc16b997c646b') # TODO - Doesn't work with GDCM 3.0.7 alone |
78
b89af51797ff
test_decode_transfer_syntax
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
74
diff
changeset
|
3169 Check('1.2.840.10008.1.2.4.51', 'ccbe75909fe5c9f7361b48416a53fc41') |
b89af51797ff
test_decode_transfer_syntax
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
74
diff
changeset
|
3170 Check('1.2.840.10008.1.2.4.57', '7bbefe11d976b1be4e568915c6a82fc3') |
b89af51797ff
test_decode_transfer_syntax
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
74
diff
changeset
|
3171 Check('1.2.840.10008.1.2.4.70', '7132cfbc457305b04b59787030c785d2') |
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test_decode_transfer_syntax
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
74
diff
changeset
|
3172 Check('1.2.840.10008.1.2.4.80', '6ff51ae525d362e0d04f550a64075a0e') |
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test_decode_transfer_syntax
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
74
diff
changeset
|
3173 Check('1.2.840.10008.1.2.4.81', '801579ae7cbf28e604ea74f2c99fa2ca') |
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Sebastien Jodogne <s.jodogne@gmail.com>
parents:
74
diff
changeset
|
3174 Check('1.2.840.10008.1.2.5', '6ff51ae525d362e0d04f550a64075a0e') # RLE, supported since Orthanc 1.0.1 |
b89af51797ff
test_decode_transfer_syntax
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
74
diff
changeset
|
3175 Check('1.2.840.10008.1.2', 'd54aed9f67a100984b42942cc2e9939b') |
299
c2144cf4bd83
HasGdcmPlugin() test
Sebastien Jodogne <s.jodogne@gmail.com>
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293
diff
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|
3176 |
c2144cf4bd83
HasGdcmPlugin() test
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diff
changeset
|
3177 # JPEG2k image, not supported without GDCM plugin |
304 | 3178 if not HasGdcmPlugin(_REMOTE): |
299
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3179 Check('1.2.840.10008.1.2.4.90', None) |
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diff
changeset
|
3180 Check('1.2.840.10008.1.2.4.91', None) |
79 | 3181 |
3182 | |
3183 def test_raw_frame(self): | |
3184 s = UploadInstance(_REMOTE, 'Issue22.dcm')['ID'] | |
3185 self.assertEqual(24, len(DoGet(_REMOTE, '/instances/%s/frames' % s))) | |
3186 a = DoGet(_REMOTE, '/instances/%s/frames/0/raw' % s) | |
3187 self.assertEqual(512 * 512 * 2, len(a)) | |
3188 self.assertEqual(512 * 512 * 2, len(DoGet(_REMOTE, '/instances/%s/frames/23/raw' % s))) | |
3189 self.assertRaises(Exception, lambda: DoGet(_REMOTE, '/instances/%s/frames/24/raw' % s)) | |
3190 self.assertEqual('1914287dc4d958eca21fdaacfb3482fa', ComputeMD5(a)) | |
3191 | |
3192 s = UploadInstance(_REMOTE, 'Multiframe.dcm')['ID'] | |
3193 self.assertEqual(76, len(DoGet(_REMOTE, '/instances/%s/frames' % s))) | |
3194 self.assertEqual(186274, len(DoGet(_REMOTE, '/instances/%s/frames/0/raw' % s))) | |
3195 self.assertEqual(189424, len(DoGet(_REMOTE, '/instances/%s/frames/75/raw' % s))) | |
3196 self.assertRaises(Exception, lambda: DoGet(_REMOTE, '/instances/%s/frames/76/raw' % s)) | |
3197 im = GetImage(_REMOTE, '/instances/%s/frames/0/raw' % s) | |
3198 self.assertEqual("L", im.mode) | |
3199 self.assertEqual(512, im.size[0]) | |
3200 self.assertEqual(512, im.size[1]) | |
3201 | |
3202 # Test an image with 2 JPEG frames spread over multiple fragments | |
3203 s = UploadInstance(_REMOTE, 'LenaTwiceWithFragments.dcm')['ID'] | |
3204 self.assertEqual(2, len(DoGet(_REMOTE, '/instances/%s/frames' % s))) | |
3205 a = DoGet(_REMOTE, '/instances/%s/frames/0/raw' % s) | |
3206 b = DoGet(_REMOTE, '/instances/%s/frames/1/raw' % s) | |
3207 self.assertEqual(69214, len(a)) | |
3208 self.assertEqual(ComputeMD5(a), ComputeMD5(b)) | |
3209 self.assertRaises(Exception, lambda: DoGet(_REMOTE, '/instances/%s/frames/2/raw' % s)) | |
3210 im = GetImage(_REMOTE, '/instances/%s/frames/0/raw' % s) | |
3211 self.assertEqual("RGB", im.mode) | |
3212 self.assertEqual(512, im.size[0]) | |
3213 self.assertEqual(512, im.size[1]) | |
323 | 3214 im = GetImage(_REMOTE, '/instances/%s/frames/0/preview' % s) # TODO - Doesn't work with GDCM 3.0.7 alone |
79 | 3215 self.assertEqual("RGB", im.mode) |
3216 self.assertEqual(512, im.size[0]) | |
3217 self.assertEqual(512, im.size[1]) | |
81 | 3218 |
3219 | |
3220 | |
3221 def test_rest_movescu(self): | |
3222 self.assertEqual(0, len(DoGet(_REMOTE, '/patients'))) | |
3223 | |
3224 # Upload 4 instances | |
3225 UploadInstance(_REMOTE, 'Brainix/Flair/IM-0001-0001.dcm') | |
3226 UploadInstance(_REMOTE, 'Brainix/Flair/IM-0001-0002.dcm') | |
3227 UploadInstance(_REMOTE, 'Brainix/Epi/IM-0001-0001.dcm') | |
3228 UploadInstance(_REMOTE, 'Knee/T2/IM-0001-0001.dcm') | |
3229 | |
3230 self.assertEqual(2, len(DoGet(_REMOTE, '/patients'))) | |
3231 for p in DoGet(_REMOTE, '/patients'): | |
3232 DoPost(_REMOTE, '/modalities/orthanctest/store', p) | |
3233 DoDelete(_REMOTE, '/patients/%s' % p) | |
3234 | |
3235 self.assertEqual(0, len(DoGet(_REMOTE, '/patients'))) | |
3236 | |
3237 # Upload instance Brainix/Flair/IM-0001-0001.dcm | |
3238 DoPost(_REMOTE, '/modalities/orthanctest/move', { 'Level' : 'Instance', | |
3239 'Resources' : [ | |
3240 { | |
3241 'StudyInstanceUID' : '2.16.840.1.113669.632.20.1211.10000357775', | |
3242 'SeriesInstanceUID' : '1.3.46.670589.11.0.0.11.4.2.0.8743.5.5396.2006120114285654497', | |
3243 'SOPInstanceUID' : '1.3.46.670589.11.0.0.11.4.2.0.8743.5.5396.2006120114314079549', | |
3244 } | |
3245 ]}) | |
3246 | |
3247 # Upload series Brainix/Flair/* | |
3248 self.assertEqual(1, len(DoGet(_REMOTE, '/patients'))) | |
3249 self.assertEqual(1, len(DoGet(_REMOTE, '/studies'))) | |
3250 self.assertEqual(1, len(DoGet(_REMOTE, '/series'))) | |
3251 self.assertEqual(1, len(DoGet(_REMOTE, '/instances'))) | |
3252 | |
3253 DoPost(_REMOTE, '/modalities/orthanctest/move', { 'Level' : 'Series', | |
3254 'Resources' : [ | |
3255 { | |
3256 'StudyInstanceUID' : '2.16.840.1.113669.632.20.1211.10000357775', | |
3257 'SeriesInstanceUID' : '1.3.46.670589.11.0.0.11.4.2.0.8743.5.5396.2006120114285654497', | |
3258 } | |
3259 ]}) | |
3260 self.assertEqual(1, len(DoGet(_REMOTE, '/patients'))) | |
3261 self.assertEqual(1, len(DoGet(_REMOTE, '/studies'))) | |
3262 self.assertEqual(1, len(DoGet(_REMOTE, '/series'))) | |
3263 self.assertEqual(2, len(DoGet(_REMOTE, '/instances'))) | |
3264 | |
3265 # Upload series Brainix/Epi/* | |
3266 DoPost(_REMOTE, '/modalities/orthanctest/move', { 'Level' : 'Series', | |
3267 'Resources' : [ | |
3268 { | |
3269 'StudyInstanceUID' : '2.16.840.1.113669.632.20.1211.10000357775', | |
3270 'SeriesInstanceUID' : '1.3.46.670589.11.0.0.11.4.2.0.8743.5.5396.2006120114314125550', | |
3271 } | |
3272 ]}) | |
3273 self.assertEqual(1, len(DoGet(_REMOTE, '/patients'))) | |
3274 self.assertEqual(1, len(DoGet(_REMOTE, '/studies'))) | |
3275 self.assertEqual(2, len(DoGet(_REMOTE, '/series'))) | |
3276 self.assertEqual(3, len(DoGet(_REMOTE, '/instances'))) | |
3277 | |
3278 # Upload study Knee/* | |
3279 DoPost(_REMOTE, '/modalities/orthanctest/move', { 'Level' : 'Study', | |
3280 'Resources' : [ | |
3281 { | |
3282 'StudyInstanceUID' : '2.16.840.1.113669.632.20.121711.10000160881', | |
3283 } | |
3284 ]}) | |
3285 self.assertEqual(2, len(DoGet(_REMOTE, '/patients'))) | |
3286 self.assertEqual(2, len(DoGet(_REMOTE, '/studies'))) | |
3287 self.assertEqual(3, len(DoGet(_REMOTE, '/series'))) | |
3288 self.assertEqual(4, len(DoGet(_REMOTE, '/instances'))) | |
3289 | |
3290 # Reset | |
3291 for p in DoGet(_REMOTE, '/patients'): | |
3292 DoDelete(_REMOTE, '/patients/%s' % p) | |
3293 | |
3294 self.assertEqual(0, len(DoGet(_REMOTE, '/patients'))) | |
3295 | |
3296 | |
3297 # Upload all at once | |
3298 DoPost(_REMOTE, '/modalities/orthanctest/move', { 'Level' : 'Study', | |
3299 'Resources' : [ | |
3300 { | |
3301 'StudyInstanceUID' : '2.16.840.1.113669.632.20.121711.10000160881', | |
3302 }, | |
3303 { | |
3304 'StudyInstanceUID' : '2.16.840.1.113669.632.20.1211.10000357775', | |
3305 } | |
3306 ]}) | |
3307 self.assertEqual(2, len(DoGet(_REMOTE, '/patients'))) | |
3308 self.assertEqual(2, len(DoGet(_REMOTE, '/studies'))) | |
3309 self.assertEqual(3, len(DoGet(_REMOTE, '/series'))) | |
3310 self.assertEqual(4, len(DoGet(_REMOTE, '/instances'))) | |
3311 | |
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0401ef51f5c1
test_reconstruct_json
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diff
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|
3312 |
0401ef51f5c1
test_reconstruct_json
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diff
changeset
|
3313 |
0401ef51f5c1
test_reconstruct_json
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parents:
83
diff
changeset
|
3314 def test_reconstruct_json(self): |
0401ef51f5c1
test_reconstruct_json
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parents:
83
diff
changeset
|
3315 self.assertEqual(0, len(DoGet(_REMOTE, '/patients'))) |
0401ef51f5c1
test_reconstruct_json
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parents:
83
diff
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|
3316 |
0401ef51f5c1
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parents:
83
diff
changeset
|
3317 instance = UploadInstance(_REMOTE, 'DummyCT.dcm')['ID'] |
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diff
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|
3318 first = DoGet(_REMOTE, '/instances/%s/tags' % instance) |
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|
3319 |
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83
diff
changeset
|
3320 self.assertEqual('TWINOW', first['0008,1010']['Value']) |
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diff
changeset
|
3321 self.assertEqual(2, len(DoGet(_REMOTE, '/instances/%s/attachments' % instance))) |
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|
3322 |
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diff
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|
3323 # Cannot delete the "DICOM" attachment |
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diff
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|
3324 self.assertRaises(Exception, lambda: DoDelete(_REMOTE, '/instances/%s/attachments/dicom' % instance)) |
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|
3325 |
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diff
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|
3326 # Can delete the "DICOM as JSON" attachment |
0401ef51f5c1
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parents:
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diff
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|
3327 r = DoDelete(_REMOTE, '/instances/%s/attachments/dicom-as-json' % instance) |
0401ef51f5c1
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parents:
83
diff
changeset
|
3328 self.assertTrue(type(r) is dict and len(r) == 0) |
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|
3329 |
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|
3330 # Only the "DICOM" attachment subsists |
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Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
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|
3331 self.assertEqual(1, len(DoGet(_REMOTE, '/instances/%s/attachments' % instance))) |
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|
3332 |
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diff
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|
3333 # Cannot manually reconstruct the "DICOM as JSON" attachment |
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diff
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|
3334 self.assertRaises(Exception, lambda: DoPut(_REMOTE, '/patients/%s/attachments/dicom-as-json' % patient, 'hello')) |
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|
3335 |
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|
3336 # Transparently reconstruct the "DICOM as JSON" attachment |
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diff
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|
3337 self.assertRaises(Exception, lambda: DoGet(_REMOTE, '/instances/%s/attachments/dicom-as-json' % instance)) |
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diff
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|
3338 second = DoGet(_REMOTE, '/instances/%s/tags' % instance) |
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|
3339 self.assertEqual(2, len(DoGet(_REMOTE, '/instances/%s/attachments' % instance))) |
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3340 |
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|
3341 third = DoGet(_REMOTE, '/instances/%s/attachments/dicom-as-json/data' % instance) |
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diff
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|
3342 self.assertEqual(str(first), str(second)) |
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diff
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|
3343 self.assertEqual(str(first), str(third)) |
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3344 |
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3345 |
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diff
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|
3346 def test_reconstruct_json2(self): |
4b24faec842b
test_reconstruct_json2 + test_private_tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
86
diff
changeset
|
3347 self.assertEqual(0, len(DoGet(_REMOTE, '/patients'))) |
4b24faec842b
test_reconstruct_json2 + test_private_tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
86
diff
changeset
|
3348 |
4b24faec842b
test_reconstruct_json2 + test_private_tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
86
diff
changeset
|
3349 a = UploadInstance(_REMOTE, 'Brainix/Flair/IM-0001-0001.dcm')['ID'] |
4b24faec842b
test_reconstruct_json2 + test_private_tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
86
diff
changeset
|
3350 b = UploadInstance(_REMOTE, 'Knee/T2/IM-0001-0001.dcm')['ID'] |
4b24faec842b
test_reconstruct_json2 + test_private_tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
86
diff
changeset
|
3351 |
4b24faec842b
test_reconstruct_json2 + test_private_tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
86
diff
changeset
|
3352 self.assertEqual('BRAINIX', DoGet(_REMOTE, '/instances/%s/tags?simplify' % a)['PatientName']) |
4b24faec842b
test_reconstruct_json2 + test_private_tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
86
diff
changeset
|
3353 self.assertEqual('KNEE', DoGet(_REMOTE, '/instances/%s/tags?simplify' % b)['PatientName']) |
4b24faec842b
test_reconstruct_json2 + test_private_tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
86
diff
changeset
|
3354 |
4b24faec842b
test_reconstruct_json2 + test_private_tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
86
diff
changeset
|
3355 self.assertEqual(2, len(DoGet(_REMOTE, '/instances/%s/attachments' % a))) |
4b24faec842b
test_reconstruct_json2 + test_private_tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
86
diff
changeset
|
3356 self.assertEqual(2, len(DoGet(_REMOTE, '/instances/%s/attachments' % b))) |
4b24faec842b
test_reconstruct_json2 + test_private_tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
86
diff
changeset
|
3357 |
4b24faec842b
test_reconstruct_json2 + test_private_tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
86
diff
changeset
|
3358 DoPost(_REMOTE, '/tools/invalidate-tags', '', 'text/plain') |
4b24faec842b
test_reconstruct_json2 + test_private_tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
86
diff
changeset
|
3359 |
4b24faec842b
test_reconstruct_json2 + test_private_tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
86
diff
changeset
|
3360 self.assertEqual(1, len(DoGet(_REMOTE, '/instances/%s/attachments' % a))) |
4b24faec842b
test_reconstruct_json2 + test_private_tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
86
diff
changeset
|
3361 self.assertEqual(1, len(DoGet(_REMOTE, '/instances/%s/attachments' % b))) |
4b24faec842b
test_reconstruct_json2 + test_private_tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
86
diff
changeset
|
3362 |
4b24faec842b
test_reconstruct_json2 + test_private_tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
86
diff
changeset
|
3363 self.assertEqual('BRAINIX', DoGet(_REMOTE, '/instances/%s/tags?simplify' % a)['PatientName']) |
4b24faec842b
test_reconstruct_json2 + test_private_tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
86
diff
changeset
|
3364 self.assertEqual('KNEE', DoGet(_REMOTE, '/instances/%s/tags?simplify' % b)['PatientName']) |
4b24faec842b
test_reconstruct_json2 + test_private_tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
86
diff
changeset
|
3365 |
4b24faec842b
test_reconstruct_json2 + test_private_tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
86
diff
changeset
|
3366 self.assertEqual(2, len(DoGet(_REMOTE, '/instances/%s/attachments' % a))) |
4b24faec842b
test_reconstruct_json2 + test_private_tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
86
diff
changeset
|
3367 self.assertEqual(2, len(DoGet(_REMOTE, '/instances/%s/attachments' % b))) |
4b24faec842b
test_reconstruct_json2 + test_private_tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
86
diff
changeset
|
3368 |
4b24faec842b
test_reconstruct_json2 + test_private_tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
86
diff
changeset
|
3369 |
4b24faec842b
test_reconstruct_json2 + test_private_tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
86
diff
changeset
|
3370 def test_private_tags(self): |
4b24faec842b
test_reconstruct_json2 + test_private_tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
86
diff
changeset
|
3371 i = UploadInstance(_REMOTE, 'PrivateMDNTags.dcm')['ID'] |
4b24faec842b
test_reconstruct_json2 + test_private_tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
86
diff
changeset
|
3372 t = DoGet(_REMOTE, '/instances/%s/tags?simplify' % i) |
4b24faec842b
test_reconstruct_json2 + test_private_tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
86
diff
changeset
|
3373 self.assertEqual('1.2.840.113704.1.111.6320.1342451261.21', t['PET-CT Multi Modality Name']) |
4b24faec842b
test_reconstruct_json2 + test_private_tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
86
diff
changeset
|
3374 self.assertEqual('p37s0_na_ctac.img', t['Original Image Filename']) |
4b24faec842b
test_reconstruct_json2 + test_private_tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
86
diff
changeset
|
3375 |
92
dbcbffb889da
test_findscu_encoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
89
diff
changeset
|
3376 |
dbcbffb889da
test_findscu_encoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
89
diff
changeset
|
3377 def test_findscu_encoding(self): |
dbcbffb889da
test_findscu_encoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
89
diff
changeset
|
3378 # Check out ../Database/Encodings/Generate.sh |
dbcbffb889da
test_findscu_encoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
89
diff
changeset
|
3379 TEST = u'Test-éüäöòДΘĝדصķћ๛ネİ' |
dbcbffb889da
test_findscu_encoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
89
diff
changeset
|
3380 ENCODINGS = { |
dbcbffb889da
test_findscu_encoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
89
diff
changeset
|
3381 'Arabic' : [ 'ISO_IR 127' ], |
dbcbffb889da
test_findscu_encoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
89
diff
changeset
|
3382 'Ascii' : [ 'ISO_IR 6' ], # More accurately, ISO 646 |
dbcbffb889da
test_findscu_encoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
89
diff
changeset
|
3383 'Cyrillic' : [ 'ISO_IR 144' ], |
dbcbffb889da
test_findscu_encoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
89
diff
changeset
|
3384 'Greek' : [ 'ISO_IR 126' ], |
dbcbffb889da
test_findscu_encoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
89
diff
changeset
|
3385 'Hebrew' : [ 'ISO_IR 138' ], |
dbcbffb889da
test_findscu_encoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
89
diff
changeset
|
3386 'Japanese' : [ 'ISO_IR 13', 'shift-jis' ], |
dbcbffb889da
test_findscu_encoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
89
diff
changeset
|
3387 'Latin1' : [ 'ISO_IR 100' ], |
dbcbffb889da
test_findscu_encoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
89
diff
changeset
|
3388 'Latin2' : [ 'ISO_IR 101' ], |
dbcbffb889da
test_findscu_encoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
89
diff
changeset
|
3389 'Latin3' : [ 'ISO_IR 109' ], |
dbcbffb889da
test_findscu_encoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
89
diff
changeset
|
3390 'Latin4' : [ 'ISO_IR 110' ], |
dbcbffb889da
test_findscu_encoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
89
diff
changeset
|
3391 'Latin5' : [ 'ISO_IR 148' ], |
dbcbffb889da
test_findscu_encoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
89
diff
changeset
|
3392 'Thai' : [ 'ISO_IR 166', 'tis-620' ], |
dbcbffb889da
test_findscu_encoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
89
diff
changeset
|
3393 'Utf8' : [ 'ISO_IR 192' ], |
dbcbffb889da
test_findscu_encoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
89
diff
changeset
|
3394 } |
dbcbffb889da
test_findscu_encoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
89
diff
changeset
|
3395 |
dbcbffb889da
test_findscu_encoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
89
diff
changeset
|
3396 for name in ENCODINGS.iterkeys(): |
dbcbffb889da
test_findscu_encoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
89
diff
changeset
|
3397 if len(ENCODINGS[name]) == 1: |
dbcbffb889da
test_findscu_encoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
89
diff
changeset
|
3398 ENCODINGS[name].append(name.lower()) |
dbcbffb889da
test_findscu_encoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
89
diff
changeset
|
3399 |
dbcbffb889da
test_findscu_encoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
89
diff
changeset
|
3400 UploadInstance(_REMOTE, 'Encodings/Lena-utf8.dcm') |
dbcbffb889da
test_findscu_encoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
89
diff
changeset
|
3401 |
dbcbffb889da
test_findscu_encoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
89
diff
changeset
|
3402 for name in ENCODINGS.iterkeys(): |
dbcbffb889da
test_findscu_encoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
89
diff
changeset
|
3403 self.assertEqual(name, DoPut(_REMOTE, '/tools/default-encoding', name)) |
dbcbffb889da
test_findscu_encoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
89
diff
changeset
|
3404 self.assertEqual(name, DoGet(_REMOTE, '/tools/default-encoding')) |
dbcbffb889da
test_findscu_encoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
89
diff
changeset
|
3405 |
dbcbffb889da
test_findscu_encoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
89
diff
changeset
|
3406 i = CallFindScu([ '-k', '0008,0052=STUDY', |
dbcbffb889da
test_findscu_encoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
89
diff
changeset
|
3407 '-k', 'SpecificCharacterSet', |
dbcbffb889da
test_findscu_encoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
89
diff
changeset
|
3408 '-k', 'PatientName' ]) |
dbcbffb889da
test_findscu_encoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
89
diff
changeset
|
3409 |
dbcbffb889da
test_findscu_encoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
89
diff
changeset
|
3410 characterSet = re.findall('\(0008,0005\).*?\[(.*?)\]', i) |
dbcbffb889da
test_findscu_encoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
89
diff
changeset
|
3411 self.assertEqual(1, len(characterSet)) |
dbcbffb889da
test_findscu_encoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
89
diff
changeset
|
3412 self.assertEqual(ENCODINGS[name][0], characterSet[0].strip()) |
dbcbffb889da
test_findscu_encoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
89
diff
changeset
|
3413 |
dbcbffb889da
test_findscu_encoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
89
diff
changeset
|
3414 patientName = re.findall('\(0010,0010\).*?\[(.*?)\]', i) |
dbcbffb889da
test_findscu_encoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
89
diff
changeset
|
3415 self.assertEqual(1, len(patientName)) |
dbcbffb889da
test_findscu_encoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
89
diff
changeset
|
3416 |
dbcbffb889da
test_findscu_encoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
89
diff
changeset
|
3417 expected = TEST.encode(ENCODINGS[name][1], 'ignore') |
dbcbffb889da
test_findscu_encoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
89
diff
changeset
|
3418 self.assertEqual(expected, patientName[0].strip()) |
dbcbffb889da
test_findscu_encoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
89
diff
changeset
|
3419 |
dbcbffb889da
test_findscu_encoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
89
diff
changeset
|
3420 |
dbcbffb889da
test_findscu_encoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
89
diff
changeset
|
3421 #for master in ENCODINGS: |
dbcbffb889da
test_findscu_encoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
89
diff
changeset
|
3422 for master in [ 'Latin1', 'Utf8', 'Cyrillic' ]: # Shortcut to speedup tests |
dbcbffb889da
test_findscu_encoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
89
diff
changeset
|
3423 self.assertEqual(master, DoPut(_REMOTE, '/tools/default-encoding', master)) |
dbcbffb889da
test_findscu_encoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
89
diff
changeset
|
3424 self.assertEqual(master, DoGet(_REMOTE, '/tools/default-encoding')) |
dbcbffb889da
test_findscu_encoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
89
diff
changeset
|
3425 |
dbcbffb889da
test_findscu_encoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
89
diff
changeset
|
3426 for name in ENCODINGS: |
dbcbffb889da
test_findscu_encoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
89
diff
changeset
|
3427 DropOrthanc(_REMOTE) |
dbcbffb889da
test_findscu_encoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
89
diff
changeset
|
3428 UploadInstance(_REMOTE, 'Encodings/Lena-%s.dcm' % ENCODINGS[name][1]) |
dbcbffb889da
test_findscu_encoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
89
diff
changeset
|
3429 |
dbcbffb889da
test_findscu_encoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
89
diff
changeset
|
3430 i = CallFindScu([ '-k', '0008,0052=STUDY', |
dbcbffb889da
test_findscu_encoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
89
diff
changeset
|
3431 '-k', 'PatientID', |
dbcbffb889da
test_findscu_encoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
89
diff
changeset
|
3432 '-k', 'SpecificCharacterSet', |
dbcbffb889da
test_findscu_encoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
89
diff
changeset
|
3433 '-k', 'PatientName' ]) |
dbcbffb889da
test_findscu_encoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
89
diff
changeset
|
3434 i = i.decode(ENCODINGS[master][1]) |
dbcbffb889da
test_findscu_encoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
89
diff
changeset
|
3435 |
dbcbffb889da
test_findscu_encoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
89
diff
changeset
|
3436 characterSet = re.findall('\(0008,0005\).*?\[(.*?)\]', i) |
dbcbffb889da
test_findscu_encoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
89
diff
changeset
|
3437 self.assertEqual(1, len(characterSet)) |
dbcbffb889da
test_findscu_encoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
89
diff
changeset
|
3438 self.assertEqual(ENCODINGS[master][0], characterSet[0].strip()) |
dbcbffb889da
test_findscu_encoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
89
diff
changeset
|
3439 |
dbcbffb889da
test_findscu_encoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
89
diff
changeset
|
3440 patientId = re.findall('\(0010,0020\).*?\[(.*?)\]', i) |
dbcbffb889da
test_findscu_encoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
89
diff
changeset
|
3441 self.assertEqual(1, len(patientId)) |
dbcbffb889da
test_findscu_encoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
89
diff
changeset
|
3442 self.assertEqual(ENCODINGS[name][1], patientId[0].strip()) |
dbcbffb889da
test_findscu_encoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
89
diff
changeset
|
3443 |
dbcbffb889da
test_findscu_encoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
89
diff
changeset
|
3444 patientName = re.findall('\(0010,0010\).*?\[(.*?)\]', i) |
dbcbffb889da
test_findscu_encoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
89
diff
changeset
|
3445 self.assertEqual(1, len(patientName)) |
dbcbffb889da
test_findscu_encoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
89
diff
changeset
|
3446 |
dbcbffb889da
test_findscu_encoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
89
diff
changeset
|
3447 tmp = ENCODINGS[name][1] |
dbcbffb889da
test_findscu_encoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
89
diff
changeset
|
3448 expected = TEST.encode(tmp, 'ignore').decode(tmp) |
dbcbffb889da
test_findscu_encoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
89
diff
changeset
|
3449 tmp = ENCODINGS[master][1] |
dbcbffb889da
test_findscu_encoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
89
diff
changeset
|
3450 expected = expected.encode(tmp, 'ignore').decode(tmp) |
dbcbffb889da
test_findscu_encoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
89
diff
changeset
|
3451 |
dbcbffb889da
test_findscu_encoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
89
diff
changeset
|
3452 self.assertEqual(expected, patientName[0].strip()) |
dbcbffb889da
test_findscu_encoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
89
diff
changeset
|
3453 |
dbcbffb889da
test_findscu_encoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
89
diff
changeset
|
3454 |
dbcbffb889da
test_findscu_encoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
89
diff
changeset
|
3455 a = DoPost(_REMOTE, '/tools/find', { 'Expand' : True, |
dbcbffb889da
test_findscu_encoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
89
diff
changeset
|
3456 'Level' : 'Study', |
dbcbffb889da
test_findscu_encoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
89
diff
changeset
|
3457 'Query' : { }}) |
dbcbffb889da
test_findscu_encoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
89
diff
changeset
|
3458 self.assertEqual(1, len(a)) |
dbcbffb889da
test_findscu_encoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
89
diff
changeset
|
3459 |
dbcbffb889da
test_findscu_encoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
89
diff
changeset
|
3460 tmp = ENCODINGS[name][1] |
dbcbffb889da
test_findscu_encoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
89
diff
changeset
|
3461 self.assertEqual(TEST.encode(tmp, 'ignore').decode(tmp), a[0]["PatientMainDicomTags"]["PatientName"]) |
96
272d1229cb49
test reconstruction of tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
95
diff
changeset
|
3462 |
314 | 3463 # Back to UTF-8 |
3464 self.assertEqual('Utf8', DoPut(_REMOTE, '/tools/default-encoding', 'Utf8')) | |
3465 | |
96
272d1229cb49
test reconstruction of tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
95
diff
changeset
|
3466 |
272d1229cb49
test reconstruction of tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
95
diff
changeset
|
3467 def test_reconstruct(self): |
272d1229cb49
test reconstruction of tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
95
diff
changeset
|
3468 def CompareMainDicomTag(expected, instance, level, tag): |
272d1229cb49
test reconstruction of tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
95
diff
changeset
|
3469 self.assertEqual(expected, DoGet(_REMOTE, '/instances/%s/%s' % (instance, level))['MainDicomTags'][tag].strip()) |
272d1229cb49
test reconstruction of tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
95
diff
changeset
|
3470 |
272d1229cb49
test reconstruction of tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
95
diff
changeset
|
3471 a = UploadInstance(_REMOTE, 'DummyCT.dcm')['ID'] |
272d1229cb49
test reconstruction of tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
95
diff
changeset
|
3472 |
272d1229cb49
test reconstruction of tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
95
diff
changeset
|
3473 studies = DoGet(_REMOTE, '/studies/') |
272d1229cb49
test reconstruction of tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
95
diff
changeset
|
3474 self.assertEqual(1, len(DoGet(_REMOTE, '/patients/'))) |
272d1229cb49
test reconstruction of tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
95
diff
changeset
|
3475 self.assertEqual(1, len(studies)) |
272d1229cb49
test reconstruction of tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
95
diff
changeset
|
3476 self.assertEqual(1, len(DoGet(_REMOTE, '/series/'))) |
272d1229cb49
test reconstruction of tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
95
diff
changeset
|
3477 self.assertEqual(1, len(DoGet(_REMOTE, '/instances/'))) |
272d1229cb49
test reconstruction of tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
95
diff
changeset
|
3478 |
272d1229cb49
test reconstruction of tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
95
diff
changeset
|
3479 modified = DoPost(_REMOTE, '/studies/%s/modify' % studies[0], { |
272d1229cb49
test reconstruction of tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
95
diff
changeset
|
3480 "Replace" : { |
272d1229cb49
test reconstruction of tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
95
diff
changeset
|
3481 "StudyDescription" : "hello", |
272d1229cb49
test reconstruction of tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
95
diff
changeset
|
3482 "SeriesDescription" : "world", |
272d1229cb49
test reconstruction of tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
95
diff
changeset
|
3483 "SOPClassUID" : "test", |
272d1229cb49
test reconstruction of tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
95
diff
changeset
|
3484 "SOPInstanceUID" : "myid", |
272d1229cb49
test reconstruction of tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
95
diff
changeset
|
3485 }, |
119 | 3486 "Keep" : [ "StudyInstanceUID", "SeriesInstanceUID" ], |
3487 "Force" : True | |
96
272d1229cb49
test reconstruction of tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
95
diff
changeset
|
3488 }) |
272d1229cb49
test reconstruction of tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
95
diff
changeset
|
3489 |
272d1229cb49
test reconstruction of tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
95
diff
changeset
|
3490 instances = DoGet(_REMOTE, '/instances/') |
272d1229cb49
test reconstruction of tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
95
diff
changeset
|
3491 self.assertEqual(1, len(DoGet(_REMOTE, '/patients/'))) |
272d1229cb49
test reconstruction of tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
95
diff
changeset
|
3492 self.assertEqual(1, len(DoGet(_REMOTE, '/studies/'))) |
272d1229cb49
test reconstruction of tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
95
diff
changeset
|
3493 self.assertEqual(1, len(DoGet(_REMOTE, '/series/'))) |
272d1229cb49
test reconstruction of tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
95
diff
changeset
|
3494 self.assertEqual(2, len(instances)) |
272d1229cb49
test reconstruction of tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
95
diff
changeset
|
3495 |
272d1229cb49
test reconstruction of tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
95
diff
changeset
|
3496 b = instances[0] if instances[1] == a else instances[1] |
272d1229cb49
test reconstruction of tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
95
diff
changeset
|
3497 |
272d1229cb49
test reconstruction of tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
95
diff
changeset
|
3498 CompareMainDicomTag('Knee (R)', a, 'study', 'StudyDescription') |
272d1229cb49
test reconstruction of tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
95
diff
changeset
|
3499 CompareMainDicomTag('AX. FSE PD', a, 'series', 'SeriesDescription') |
272d1229cb49
test reconstruction of tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
95
diff
changeset
|
3500 CompareMainDicomTag('1.2.840.113619.2.176.2025.1499492.7040.1171286242.109', a, '', 'SOPInstanceUID') |
272d1229cb49
test reconstruction of tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
95
diff
changeset
|
3501 CompareMainDicomTag('myid', b, '', 'SOPInstanceUID') |
272d1229cb49
test reconstruction of tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
95
diff
changeset
|
3502 self.assertEqual('1.2.840.10008.5.1.4.1.1.4', DoGet(_REMOTE, '/instances/%s/metadata/SopClassUid' % a).strip()) |
272d1229cb49
test reconstruction of tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
95
diff
changeset
|
3503 self.assertEqual('test', DoGet(_REMOTE, '/instances/%s/metadata/SopClassUid' % b).strip()) |
272d1229cb49
test reconstruction of tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
95
diff
changeset
|
3504 |
272d1229cb49
test reconstruction of tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
95
diff
changeset
|
3505 DoPost(_REMOTE, '/instances/%s/reconstruct' % b, {}) |
272d1229cb49
test reconstruction of tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
95
diff
changeset
|
3506 |
272d1229cb49
test reconstruction of tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
95
diff
changeset
|
3507 CompareMainDicomTag('hello', a, 'study', 'StudyDescription') |
272d1229cb49
test reconstruction of tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
95
diff
changeset
|
3508 CompareMainDicomTag('world', a, 'series', 'SeriesDescription') |
272d1229cb49
test reconstruction of tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
95
diff
changeset
|
3509 CompareMainDicomTag('1.2.840.113619.2.176.2025.1499492.7040.1171286242.109', a, '', 'SOPInstanceUID') |
102 | 3510 |
104 | 3511 def test_httpClient_lua(self): |
3512 with open(GetDatabasePath('Lua/HttpClient.lua'), 'r') as f: | |
102 | 3513 result = DoPost(_REMOTE, '/tools/execute-script', f.read(), 'application/lua') |
3514 | |
3515 self.assertIn('OK', result) | |
107
fddb35f7289d
test_bitbucket_issue_44
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
104
diff
changeset
|
3516 |
fddb35f7289d
test_bitbucket_issue_44
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
104
diff
changeset
|
3517 |
fddb35f7289d
test_bitbucket_issue_44
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
104
diff
changeset
|
3518 def test_bitbucket_issue_44(self): |
319 | 3519 # https://bugs.orthanc-server.com/show_bug.cgi?id=44 |
107
fddb35f7289d
test_bitbucket_issue_44
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
104
diff
changeset
|
3520 UploadInstance(_REMOTE, 'Issue44/Monochrome1.dcm') |
fddb35f7289d
test_bitbucket_issue_44
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
104
diff
changeset
|
3521 UploadInstance(_REMOTE, 'Issue44/Monochrome2.dcm') |
fddb35f7289d
test_bitbucket_issue_44
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
104
diff
changeset
|
3522 |
fddb35f7289d
test_bitbucket_issue_44
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
104
diff
changeset
|
3523 # dcmcjpeg +ua +eb Monochrome1.dcm Monochrome1-Jpeg.dcm |
fddb35f7289d
test_bitbucket_issue_44
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
104
diff
changeset
|
3524 UploadInstance(_REMOTE, 'Issue44/Monochrome1-Jpeg.dcm') |
fddb35f7289d
test_bitbucket_issue_44
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
104
diff
changeset
|
3525 |
fddb35f7289d
test_bitbucket_issue_44
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
104
diff
changeset
|
3526 # dcmcjpeg +ua Monochrome1.dcm Monochrome1-JpegLS.dcm |
fddb35f7289d
test_bitbucket_issue_44
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
104
diff
changeset
|
3527 UploadInstance(_REMOTE, 'Issue44/Monochrome1-JpegLS.dcm') |
fddb35f7289d
test_bitbucket_issue_44
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
104
diff
changeset
|
3528 |
fddb35f7289d
test_bitbucket_issue_44
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
104
diff
changeset
|
3529 monochrome1 = 'bcdd600a-a6a9c522-5f0a6e84-8657c9f3-b76e59b7' |
fddb35f7289d
test_bitbucket_issue_44
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
104
diff
changeset
|
3530 monochrome1_jpeg = '9df82121-208a2da8-0038674a-3d7a773b-b7008cd2' |
fddb35f7289d
test_bitbucket_issue_44
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
104
diff
changeset
|
3531 monochrome1_jpegls = '0486d1a2-9165573f-b1976b20-e927b016-6b8d67ab' |
fddb35f7289d
test_bitbucket_issue_44
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
104
diff
changeset
|
3532 monochrome2 = 'f00947b7-f61f7164-c93414d1-c6fbda6a-9e92ed20' |
fddb35f7289d
test_bitbucket_issue_44
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
104
diff
changeset
|
3533 |
fddb35f7289d
test_bitbucket_issue_44
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
104
diff
changeset
|
3534 for i in [ monochrome1, monochrome1_jpeg, monochrome1_jpegls ]: |
fddb35f7289d
test_bitbucket_issue_44
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
104
diff
changeset
|
3535 im = GetImage(_REMOTE, '/instances/%s/preview' % i) |
fddb35f7289d
test_bitbucket_issue_44
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
104
diff
changeset
|
3536 self.assertEqual("L", im.mode) |
fddb35f7289d
test_bitbucket_issue_44
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
104
diff
changeset
|
3537 self.assertEqual(2010, im.size[0]) |
fddb35f7289d
test_bitbucket_issue_44
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
104
diff
changeset
|
3538 self.assertEqual(2446, im.size[1]) |
fddb35f7289d
test_bitbucket_issue_44
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
104
diff
changeset
|
3539 |
fddb35f7289d
test_bitbucket_issue_44
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
104
diff
changeset
|
3540 # This is the chest image, with MONOCHROME1. Raw background is |
fddb35f7289d
test_bitbucket_issue_44
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
104
diff
changeset
|
3541 # white (255), should be rendered as black (0) => invert |
fddb35f7289d
test_bitbucket_issue_44
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parents:
104
diff
changeset
|
3542 if i == monochrome1_jpeg: |
fddb35f7289d
test_bitbucket_issue_44
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parents:
104
diff
changeset
|
3543 # Add some tolerance because of JPEG destructive compression |
fddb35f7289d
test_bitbucket_issue_44
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
104
diff
changeset
|
3544 self.assertGreater(10, im.getpixel((0,0))) |
fddb35f7289d
test_bitbucket_issue_44
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
104
diff
changeset
|
3545 else: |
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test_bitbucket_issue_44
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
104
diff
changeset
|
3546 self.assertEqual(0, im.getpixel((0,0))) |
fddb35f7289d
test_bitbucket_issue_44
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
104
diff
changeset
|
3547 |
fddb35f7289d
test_bitbucket_issue_44
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
104
diff
changeset
|
3548 im = GetImage(_REMOTE, '/instances/%s/preview' % monochrome2) |
fddb35f7289d
test_bitbucket_issue_44
Sebastien Jodogne <s.jodogne@gmail.com>
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104
diff
changeset
|
3549 self.assertEqual("L", im.mode) |
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parents:
104
diff
changeset
|
3550 self.assertEqual(1572, im.size[0]) |
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104
diff
changeset
|
3551 self.assertEqual(2010, im.size[1]) |
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parents:
104
diff
changeset
|
3552 |
fddb35f7289d
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Sebastien Jodogne <s.jodogne@gmail.com>
parents:
104
diff
changeset
|
3553 # This is the key image, with MONOCHROME2. Raw background is |
fddb35f7289d
test_bitbucket_issue_44
Sebastien Jodogne <s.jodogne@gmail.com>
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104
diff
changeset
|
3554 # white (255), should be rendered as white (255) |
fddb35f7289d
test_bitbucket_issue_44
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
104
diff
changeset
|
3555 self.assertEqual(255, im.getpixel((0,0))) |
111
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diff
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|
3556 |
7005cdeeb704
test_bitbucket_issue_42
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diff
changeset
|
3557 |
7005cdeeb704
test_bitbucket_issue_42
Sebastien Jodogne <s.jodogne@gmail.com>
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107
diff
changeset
|
3558 def test_bitbucket_issue_42(self): |
319 | 3559 # https://bugs.orthanc-server.com/show_bug.cgi?id=42 |
123 | 3560 # This test fails on DCMTK 3.6.0, but succeeds in DCMTK 3.6.1 snapshots and DCMTK 3.6.2 |
111
7005cdeeb704
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107
diff
changeset
|
3561 UploadInstance(_REMOTE, 'Issue42.dcm')['ID'] |
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diff
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|
3562 modified = DoPost(_REMOTE, |
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107
diff
changeset
|
3563 '/patients/da128605-e040d0c4-310615d2-3475da63-df2d1ef4/modify', |
119 | 3564 '{"Replace":{"PatientID":"Hello","PatientName":"Sample patient name"},"Force":true}', |
111
7005cdeeb704
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Sebastien Jodogne <s.jodogne@gmail.com>
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107
diff
changeset
|
3565 'application/json') |
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107
diff
changeset
|
3566 self.assertTrue('PatientID' in modified) |
113
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112
diff
changeset
|
3567 |
3e5934363e76
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diff
changeset
|
3568 |
3e5934363e76
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Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
changeset
|
3569 def test_rest_find_limit(self): |
3e5934363e76
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parents:
112
diff
changeset
|
3570 # Check the "Since" and "Limit" parameters in URI "/tools/find" |
319 | 3571 # Related to issue 53: https://bugs.orthanc-server.com/show_bug.cgi?id=53 |
111
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changeset
|
3572 |
113
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diff
changeset
|
3573 # Upload 6 instances |
3e5934363e76
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diff
changeset
|
3574 brainix = [] |
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test_rest_find_limitµ
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
112
diff
changeset
|
3575 knee = [] |
3e5934363e76
test_rest_find_limitµ
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
112
diff
changeset
|
3576 for i in range(2): |
3e5934363e76
test_rest_find_limitµ
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
112
diff
changeset
|
3577 brainix.append(UploadInstance(_REMOTE, 'Brainix/Flair/IM-0001-000%d.dcm' % (i + 1)) ['ID']) |
3e5934363e76
test_rest_find_limitµ
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
112
diff
changeset
|
3578 brainix.append(UploadInstance(_REMOTE, 'Brainix/Epi/IM-0001-000%d.dcm' % (i + 1)) ['ID']) |
3e5934363e76
test_rest_find_limitµ
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
112
diff
changeset
|
3579 knee.append(UploadInstance(_REMOTE, 'Knee/T1/IM-0001-000%d.dcm' % (i + 1)) ['ID']) |
3e5934363e76
test_rest_find_limitµ
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
112
diff
changeset
|
3580 |
3e5934363e76
test_rest_find_limitµ
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
112
diff
changeset
|
3581 # Check using BRAINIX |
3e5934363e76
test_rest_find_limitµ
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
112
diff
changeset
|
3582 a = DoPost(_REMOTE, '/tools/find', { 'Level' : 'Instance', |
3e5934363e76
test_rest_find_limitµ
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
112
diff
changeset
|
3583 'Query' : { 'PatientName' : 'B*' }, |
3e5934363e76
test_rest_find_limitµ
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
112
diff
changeset
|
3584 'Limit' : 10 }) |
3e5934363e76
test_rest_find_limitµ
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
112
diff
changeset
|
3585 self.assertEqual(4, len(a)) |
3e5934363e76
test_rest_find_limitµ
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
112
diff
changeset
|
3586 |
3e5934363e76
test_rest_find_limitµ
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
112
diff
changeset
|
3587 a = DoPost(_REMOTE, '/tools/find', { 'Level' : 'Instance', |
3e5934363e76
test_rest_find_limitµ
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
112
diff
changeset
|
3588 'Query' : { 'PatientName' : 'B*' }, |
3e5934363e76
test_rest_find_limitµ
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
112
diff
changeset
|
3589 'Limit' : 4 }) |
3e5934363e76
test_rest_find_limitµ
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
112
diff
changeset
|
3590 self.assertEqual(4, len(a)) |
3e5934363e76
test_rest_find_limitµ
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
112
diff
changeset
|
3591 |
3e5934363e76
test_rest_find_limitµ
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
112
diff
changeset
|
3592 a = DoPost(_REMOTE, '/tools/find', { 'Level' : 'Instance', |
3e5934363e76
test_rest_find_limitµ
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
112
diff
changeset
|
3593 'Query' : { 'PatientName' : 'B*' }, |
3e5934363e76
test_rest_find_limitµ
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
112
diff
changeset
|
3594 'Since' : 2, |
3e5934363e76
test_rest_find_limitµ
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
112
diff
changeset
|
3595 'Limit' : 4 }) |
3e5934363e76
test_rest_find_limitµ
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
112
diff
changeset
|
3596 self.assertEqual(2, len(a)) |
3e5934363e76
test_rest_find_limitµ
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
112
diff
changeset
|
3597 |
3e5934363e76
test_rest_find_limitµ
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
112
diff
changeset
|
3598 a = DoPost(_REMOTE, '/tools/find', { 'Level' : 'Instance', |
3e5934363e76
test_rest_find_limitµ
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
112
diff
changeset
|
3599 'Query' : { 'PatientName' : 'B*' }, |
3e5934363e76
test_rest_find_limitµ
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
112
diff
changeset
|
3600 'Limit' : 3 }) |
3e5934363e76
test_rest_find_limitµ
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
112
diff
changeset
|
3601 self.assertEqual(3, len(a)) |
3e5934363e76
test_rest_find_limitµ
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
112
diff
changeset
|
3602 |
3e5934363e76
test_rest_find_limitµ
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
112
diff
changeset
|
3603 b = [] |
3e5934363e76
test_rest_find_limitµ
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
112
diff
changeset
|
3604 for i in range(4): |
3e5934363e76
test_rest_find_limitµ
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
112
diff
changeset
|
3605 a = DoPost(_REMOTE, '/tools/find', { 'Level' : 'Instance', |
3e5934363e76
test_rest_find_limitµ
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
112
diff
changeset
|
3606 'Query' : { 'PatientName' : 'B*' }, |
3e5934363e76
test_rest_find_limitµ
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
112
diff
changeset
|
3607 'Limit' : 1, |
3e5934363e76
test_rest_find_limitµ
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
112
diff
changeset
|
3608 'Since' : i }) |
3e5934363e76
test_rest_find_limitµ
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
112
diff
changeset
|
3609 self.assertEqual(1, len(a)) |
3e5934363e76
test_rest_find_limitµ
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
112
diff
changeset
|
3610 b.append(a[0]) |
3e5934363e76
test_rest_find_limitµ
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
112
diff
changeset
|
3611 |
3e5934363e76
test_rest_find_limitµ
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
112
diff
changeset
|
3612 # Check whether the two sets are equal through symmetric difference |
3e5934363e76
test_rest_find_limitµ
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
112
diff
changeset
|
3613 self.assertEqual(0, len(set(b) ^ set(brainix))) |
3e5934363e76
test_rest_find_limitµ
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
112
diff
changeset
|
3614 |
3e5934363e76
test_rest_find_limitµ
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
112
diff
changeset
|
3615 # Check using KNEE |
3e5934363e76
test_rest_find_limitµ
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
112
diff
changeset
|
3616 a = DoPost(_REMOTE, '/tools/find', { 'Level' : 'Instance', |
3e5934363e76
test_rest_find_limitµ
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
112
diff
changeset
|
3617 'Query' : { 'PatientName' : 'K*' }, |
3e5934363e76
test_rest_find_limitµ
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
112
diff
changeset
|
3618 'Limit' : 10 }) |
3e5934363e76
test_rest_find_limitµ
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
112
diff
changeset
|
3619 self.assertEqual(2, len(a)) |
3e5934363e76
test_rest_find_limitµ
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
112
diff
changeset
|
3620 |
3e5934363e76
test_rest_find_limitµ
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
112
diff
changeset
|
3621 a = DoPost(_REMOTE, '/tools/find', { 'Level' : 'Instance', |
3e5934363e76
test_rest_find_limitµ
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
112
diff
changeset
|
3622 'Query' : { 'PatientName' : 'K*' }, |
3e5934363e76
test_rest_find_limitµ
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
112
diff
changeset
|
3623 'Limit' : 2 }) |
3e5934363e76
test_rest_find_limitµ
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
112
diff
changeset
|
3624 self.assertEqual(2, len(a)) |
3e5934363e76
test_rest_find_limitµ
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
112
diff
changeset
|
3625 |
3e5934363e76
test_rest_find_limitµ
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
112
diff
changeset
|
3626 b = [] |
3e5934363e76
test_rest_find_limitµ
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
112
diff
changeset
|
3627 for i in range(2): |
3e5934363e76
test_rest_find_limitµ
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
112
diff
changeset
|
3628 a = DoPost(_REMOTE, '/tools/find', { 'Level' : 'Instance', |
3e5934363e76
test_rest_find_limitµ
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
112
diff
changeset
|
3629 'Query' : { 'PatientName' : 'K*' }, |
3e5934363e76
test_rest_find_limitµ
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
112
diff
changeset
|
3630 'Limit' : 1, |
3e5934363e76
test_rest_find_limitµ
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
112
diff
changeset
|
3631 'Since' : i }) |
3e5934363e76
test_rest_find_limitµ
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
112
diff
changeset
|
3632 self.assertEqual(1, len(a)) |
3e5934363e76
test_rest_find_limitµ
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
112
diff
changeset
|
3633 b.append(a[0]) |
3e5934363e76
test_rest_find_limitµ
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
112
diff
changeset
|
3634 |
3e5934363e76
test_rest_find_limitµ
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
112
diff
changeset
|
3635 self.assertEqual(0, len(set(b) ^ set(knee))) |
115
45ebfab035b7
test_bitbucket_issue_46
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
113
diff
changeset
|
3636 |
45ebfab035b7
test_bitbucket_issue_46
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
113
diff
changeset
|
3637 |
45ebfab035b7
test_bitbucket_issue_46
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
113
diff
changeset
|
3638 def test_bitbucket_issue_46(self): |
45ebfab035b7
test_bitbucket_issue_46
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
113
diff
changeset
|
3639 # "PHI remaining after anonymization" |
319 | 3640 # https://bugs.orthanc-server.com/show_bug.cgi?id=46 |
115
45ebfab035b7
test_bitbucket_issue_46
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
113
diff
changeset
|
3641 |
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test_bitbucket_issue_46
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
113
diff
changeset
|
3642 def GetAnonymizedTags(study, version): |
45ebfab035b7
test_bitbucket_issue_46
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
113
diff
changeset
|
3643 anonymized = DoPost(_REMOTE, '/studies/%s/anonymize' % study, |
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test_bitbucket_issue_46
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
113
diff
changeset
|
3644 { 'DicomVersion' : version }, |
45ebfab035b7
test_bitbucket_issue_46
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
113
diff
changeset
|
3645 'application/json') ['ID'] |
45ebfab035b7
test_bitbucket_issue_46
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
113
diff
changeset
|
3646 a = DoGet(_REMOTE, '/studies/%s/instances' % anonymized) |
45ebfab035b7
test_bitbucket_issue_46
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
113
diff
changeset
|
3647 self.assertEqual(1, len(a)) |
45ebfab035b7
test_bitbucket_issue_46
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
113
diff
changeset
|
3648 |
45ebfab035b7
test_bitbucket_issue_46
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
113
diff
changeset
|
3649 instance = a[0]['ID'] |
45ebfab035b7
test_bitbucket_issue_46
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
113
diff
changeset
|
3650 |
45ebfab035b7
test_bitbucket_issue_46
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
113
diff
changeset
|
3651 return (instance, DoGet(_REMOTE, '/instances/%s/tags' % instance)) |
45ebfab035b7
test_bitbucket_issue_46
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
113
diff
changeset
|
3652 |
45ebfab035b7
test_bitbucket_issue_46
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
113
diff
changeset
|
3653 UploadInstance(_REMOTE, 'Issue44/Monochrome1.dcm') |
45ebfab035b7
test_bitbucket_issue_46
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
113
diff
changeset
|
3654 origStudy = '6068a14b-d4df27af-9ec22145-538772d8-74f228ff' |
45ebfab035b7
test_bitbucket_issue_46
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
113
diff
changeset
|
3655 |
45ebfab035b7
test_bitbucket_issue_46
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
113
diff
changeset
|
3656 # Add the 0032,1033 (Requesting Service) and the 0010,1060 |
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test_bitbucket_issue_46
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
113
diff
changeset
|
3657 # (Patient's Mother's Birth Name) tags |
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test_bitbucket_issue_46
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
113
diff
changeset
|
3658 newStudy = DoPost(_REMOTE, '/studies/%s/modify' % origStudy, |
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test_bitbucket_issue_46
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
113
diff
changeset
|
3659 '{"Replace":{"0010,1060":"OSIMIS","0032,1033":"MOTHER"}}', |
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test_bitbucket_issue_46
Sebastien Jodogne <s.jodogne@gmail.com>
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113
diff
changeset
|
3660 'application/json')['ID'] |
45ebfab035b7
test_bitbucket_issue_46
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
113
diff
changeset
|
3661 |
45ebfab035b7
test_bitbucket_issue_46
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
113
diff
changeset
|
3662 # Use Table E.1-1 from PS 3.15-2008 |
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test_bitbucket_issue_46
Sebastien Jodogne <s.jodogne@gmail.com>
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113
diff
changeset
|
3663 # https://raw.githubusercontent.com/jodogne/dicom-specification/master/2008/08_15pu.pdf |
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113
diff
changeset
|
3664 (instance, tags) = GetAnonymizedTags(newStudy, "2008") |
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test_bitbucket_issue_46
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113
diff
changeset
|
3665 self.assertTrue('0032,1033' in tags) |
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113
diff
changeset
|
3666 self.assertTrue('0010,1060' in tags) |
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test_bitbucket_issue_46
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
113
diff
changeset
|
3667 |
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test_bitbucket_issue_46
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parents:
113
diff
changeset
|
3668 # Use Table E.1-1 from PS 3.15-2011 (only if Orthanc >= 1.2.1) |
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diff
changeset
|
3669 # https://raw.githubusercontent.com/jodogne/dicom-specification/master/2008/08_15pu.pdf |
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diff
changeset
|
3670 (instance, tags) = GetAnonymizedTags(newStudy, "2017c") |
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test_bitbucket_issue_46
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113
diff
changeset
|
3671 self.assertFalse('0032,1033' in tags) |
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test_bitbucket_issue_46
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113
diff
changeset
|
3672 self.assertFalse('0010,1060' in tags) |
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test_bitbucket_issue_46
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
113
diff
changeset
|
3673 |
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test_bitbucket_issue_46
Sebastien Jodogne <s.jodogne@gmail.com>
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113
diff
changeset
|
3674 t = {} |
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test_bitbucket_issue_46
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113
diff
changeset
|
3675 for (key, value) in tags.iteritems(): |
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113
diff
changeset
|
3676 t[value['Name']] = value['Value'] |
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test_bitbucket_issue_46
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diff
changeset
|
3677 |
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test_bitbucket_issue_46
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113
diff
changeset
|
3678 self.assertEqual('', t['StudyDate']) # Type 1 tag => cleared |
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diff
changeset
|
3679 self.assertEqual('', t['StudyTime']) # Type 1 tag => cleared |
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diff
changeset
|
3680 self.assertEqual('', t['PatientSex']) # Type 1 tag => cleared |
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diff
changeset
|
3681 self.assertFalse('SeriesDate' in t) # Type 3 tag => null |
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test_bitbucket_issue_46
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113
diff
changeset
|
3682 self.assertFalse('SeriesTime' in t) # Type 3 tag => null |
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test_bitbucket_issue_46
Sebastien Jodogne <s.jodogne@gmail.com>
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113
diff
changeset
|
3683 |
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test_bitbucket_issue_46
Sebastien Jodogne <s.jodogne@gmail.com>
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113
diff
changeset
|
3684 with tempfile.NamedTemporaryFile(delete = True) as f: |
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test_bitbucket_issue_46
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113
diff
changeset
|
3685 # Run "dciodvfy" on the anonymized file to be sure it is still valid |
45ebfab035b7
test_bitbucket_issue_46
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
113
diff
changeset
|
3686 f.write(DoGet(_REMOTE, '/instances/%s/file' % instance)) |
45ebfab035b7
test_bitbucket_issue_46
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
113
diff
changeset
|
3687 f.flush() |
45ebfab035b7
test_bitbucket_issue_46
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
113
diff
changeset
|
3688 subprocess.check_output([ FindExecutable('dciodvfy'), f.name ], |
45ebfab035b7
test_bitbucket_issue_46
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
113
diff
changeset
|
3689 stderr = subprocess.STDOUT).split('\n') |
118
a954c535fef6
test_bitbucket_issue_55
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
117
diff
changeset
|
3690 |
a954c535fef6
test_bitbucket_issue_55
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
117
diff
changeset
|
3691 |
a954c535fef6
test_bitbucket_issue_55
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
117
diff
changeset
|
3692 def test_bitbucket_issue_55(self): |
a954c535fef6
test_bitbucket_issue_55
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
117
diff
changeset
|
3693 def Run(modify, query): |
a954c535fef6
test_bitbucket_issue_55
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
117
diff
changeset
|
3694 self.assertEqual(1, len(DoGet(_REMOTE, '/instances'))) |
a954c535fef6
test_bitbucket_issue_55
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
117
diff
changeset
|
3695 |
a954c535fef6
test_bitbucket_issue_55
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
117
diff
changeset
|
3696 operation = 'modify' if modify else 'anonymize' |
a954c535fef6
test_bitbucket_issue_55
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
117
diff
changeset
|
3697 |
a954c535fef6
test_bitbucket_issue_55
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
117
diff
changeset
|
3698 self.assertRaises(Exception, lambda: DoPost( |
a954c535fef6
test_bitbucket_issue_55
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
117
diff
changeset
|
3699 _REMOTE, '/studies/%s/%s' % (study, operation), query)) |
a954c535fef6
test_bitbucket_issue_55
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
117
diff
changeset
|
3700 self.assertEqual(1, len(DoGet(_REMOTE, '/instances'))) |
a954c535fef6
test_bitbucket_issue_55
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
117
diff
changeset
|
3701 |
a954c535fef6
test_bitbucket_issue_55
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
117
diff
changeset
|
3702 query["Force"] = True |
a954c535fef6
test_bitbucket_issue_55
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
117
diff
changeset
|
3703 a = DoPost(_REMOTE, '/studies/%s/%s' % (study, operation), query)['Path'] |
a954c535fef6
test_bitbucket_issue_55
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
117
diff
changeset
|
3704 self.assertEqual(2, len(DoGet(_REMOTE, '/instances'))) |
a954c535fef6
test_bitbucket_issue_55
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
117
diff
changeset
|
3705 DoDelete(_REMOTE, a) |
a954c535fef6
test_bitbucket_issue_55
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
117
diff
changeset
|
3706 |
a954c535fef6
test_bitbucket_issue_55
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
117
diff
changeset
|
3707 self.assertEqual(1, len(DoGet(_REMOTE, '/instances'))) |
a954c535fef6
test_bitbucket_issue_55
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
117
diff
changeset
|
3708 |
a954c535fef6
test_bitbucket_issue_55
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
117
diff
changeset
|
3709 UploadInstance(_REMOTE, 'DummyCT.dcm') |
a954c535fef6
test_bitbucket_issue_55
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
117
diff
changeset
|
3710 study = 'b9c08539-26f93bde-c81ab0d7-bffaf2cb-a4d0bdd0' |
a954c535fef6
test_bitbucket_issue_55
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
117
diff
changeset
|
3711 |
a954c535fef6
test_bitbucket_issue_55
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
117
diff
changeset
|
3712 Run(True, { "Replace" : { "StudyInstanceUID" : "world" } }) |
a954c535fef6
test_bitbucket_issue_55
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
117
diff
changeset
|
3713 Run(True, { "Replace" : { "SeriesInstanceUID" : "world" } }) |
a954c535fef6
test_bitbucket_issue_55
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
117
diff
changeset
|
3714 Run(True, { "Replace" : { "SOPInstanceUID" : "world" } }) |
a954c535fef6
test_bitbucket_issue_55
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
117
diff
changeset
|
3715 |
a954c535fef6
test_bitbucket_issue_55
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
117
diff
changeset
|
3716 Run(False, { "Keep" : [ "StudyInstanceUID" ]}) |
a954c535fef6
test_bitbucket_issue_55
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
117
diff
changeset
|
3717 Run(False, { "Keep" : [ "SeriesInstanceUID" ]}) |
a954c535fef6
test_bitbucket_issue_55
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
117
diff
changeset
|
3718 Run(False, { "Keep" : [ "SOPInstanceUID" ]}) |
a954c535fef6
test_bitbucket_issue_55
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
117
diff
changeset
|
3719 |
a954c535fef6
test_bitbucket_issue_55
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
117
diff
changeset
|
3720 Run(False, { "Replace" : { "StudyInstanceUID" : "world" } }) |
a954c535fef6
test_bitbucket_issue_55
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
117
diff
changeset
|
3721 Run(False, { "Replace" : { "SeriesInstanceUID" : "world" } }) |
a954c535fef6
test_bitbucket_issue_55
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
117
diff
changeset
|
3722 Run(False, { "Replace" : { "SOPInstanceUID" : "world" } }) |
a954c535fef6
test_bitbucket_issue_55
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
117
diff
changeset
|
3723 |
120
fce08afe6b2d
test_bitbucket_issue_56
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
119
diff
changeset
|
3724 |
fce08afe6b2d
test_bitbucket_issue_56
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
119
diff
changeset
|
3725 def test_bitbucket_issue_56(self): |
fce08afe6b2d
test_bitbucket_issue_56
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
119
diff
changeset
|
3726 # Case-insensitive matching over accents. This test assumes |
fce08afe6b2d
test_bitbucket_issue_56
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
119
diff
changeset
|
3727 # that the "CaseSensitivePN" configuration option of Orthanc |
fce08afe6b2d
test_bitbucket_issue_56
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
119
diff
changeset
|
3728 # is set to "false" (default value). |
319 | 3729 # https://bugs.orthanc-server.com/show_bug.cgi?id=56 |
120
fce08afe6b2d
test_bitbucket_issue_56
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
119
diff
changeset
|
3730 |
fce08afe6b2d
test_bitbucket_issue_56
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
119
diff
changeset
|
3731 def Check(name, expected, expectedSensitive): |
fce08afe6b2d
test_bitbucket_issue_56
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
119
diff
changeset
|
3732 a = CallFindScu([ '-k', '0008,0005=ISO_IR 192', # Use UTF-8 |
fce08afe6b2d
test_bitbucket_issue_56
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
119
diff
changeset
|
3733 '-k', '0008,0052=PATIENT', |
fce08afe6b2d
test_bitbucket_issue_56
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
119
diff
changeset
|
3734 '-k', 'PatientName=%s' % name ]) |
fce08afe6b2d
test_bitbucket_issue_56
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
119
diff
changeset
|
3735 patientNames = re.findall('\(0010,0010\).*?\[(.*?)\]', a) |
fce08afe6b2d
test_bitbucket_issue_56
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
119
diff
changeset
|
3736 self.assertEqual(expected, len(patientNames)) |
fce08afe6b2d
test_bitbucket_issue_56
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
119
diff
changeset
|
3737 |
fce08afe6b2d
test_bitbucket_issue_56
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
119
diff
changeset
|
3738 a = DoPost(_REMOTE, '/tools/find', { 'Level' : 'Patient', |
fce08afe6b2d
test_bitbucket_issue_56
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
119
diff
changeset
|
3739 'CaseSensitive' : False, |
fce08afe6b2d
test_bitbucket_issue_56
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
119
diff
changeset
|
3740 'Query' : { 'PatientName' : name }}) |
fce08afe6b2d
test_bitbucket_issue_56
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
119
diff
changeset
|
3741 self.assertEqual(expected, len(a)) |
fce08afe6b2d
test_bitbucket_issue_56
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
119
diff
changeset
|
3742 |
fce08afe6b2d
test_bitbucket_issue_56
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
119
diff
changeset
|
3743 a = DoPost(_REMOTE, '/tools/find', { 'Level' : 'Patient', |
fce08afe6b2d
test_bitbucket_issue_56
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
119
diff
changeset
|
3744 'CaseSensitive' : True, |
fce08afe6b2d
test_bitbucket_issue_56
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
119
diff
changeset
|
3745 'Query' : { 'PatientName' : name }}) |
fce08afe6b2d
test_bitbucket_issue_56
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
119
diff
changeset
|
3746 self.assertEqual(expectedSensitive, len(a)) |
fce08afe6b2d
test_bitbucket_issue_56
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
119
diff
changeset
|
3747 |
fce08afe6b2d
test_bitbucket_issue_56
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
119
diff
changeset
|
3748 UploadInstance(_REMOTE, 'Encodings/Lena-latin1.dcm') |
fce08afe6b2d
test_bitbucket_issue_56
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
119
diff
changeset
|
3749 |
fce08afe6b2d
test_bitbucket_issue_56
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
119
diff
changeset
|
3750 # WildcardConstraint |
fce08afe6b2d
test_bitbucket_issue_56
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
119
diff
changeset
|
3751 Check('TeSt*', 1, 0) |
fce08afe6b2d
test_bitbucket_issue_56
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
119
diff
changeset
|
3752 Check('TeSt-a*', 0, 0) |
fce08afe6b2d
test_bitbucket_issue_56
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
119
diff
changeset
|
3753 Check('TeSt-É*', 1, 0) |
fce08afe6b2d
test_bitbucket_issue_56
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
119
diff
changeset
|
3754 Check('TeSt-é*', 1, 0) |
fce08afe6b2d
test_bitbucket_issue_56
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
119
diff
changeset
|
3755 Check('Test-é*', 1, 1) |
fce08afe6b2d
test_bitbucket_issue_56
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
119
diff
changeset
|
3756 |
fce08afe6b2d
test_bitbucket_issue_56
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
119
diff
changeset
|
3757 # ListConstraint |
fce08afe6b2d
test_bitbucket_issue_56
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
119
diff
changeset
|
3758 Check('Test-éüäöò\\nope', 1, 1) |
fce08afe6b2d
test_bitbucket_issue_56
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
119
diff
changeset
|
3759 Check('Test-ÉÜÄÖÒ\\nope', 1, 0) |
fce08afe6b2d
test_bitbucket_issue_56
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
119
diff
changeset
|
3760 |
fce08afe6b2d
test_bitbucket_issue_56
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
119
diff
changeset
|
3761 # ValueConstraint |
fce08afe6b2d
test_bitbucket_issue_56
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
119
diff
changeset
|
3762 Check('Test-éüäöò', 1, 1) |
fce08afe6b2d
test_bitbucket_issue_56
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
119
diff
changeset
|
3763 Check('Test-ÉÜÄÖÒ', 1, 0) |
fce08afe6b2d
test_bitbucket_issue_56
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
119
diff
changeset
|
3764 |
125 | 3765 |
3766 def test_gbk_alias(self): | |
3767 # https://groups.google.com/d/msg/orthanc-users/WMM8LMbjpUc/02-1f_yFCgAJ | |
3768 # This test fails on Orthanc <= 1.3.0 | |
3769 i = UploadInstance(_REMOTE, '2017-09-19-GBK-Tumashu.dcm')['ID'] | |
3770 tags = DoGet(_REMOTE, '/instances/%s/tags?simplify' % i) | |
3771 self.assertEqual(tags['PatientName'], u'徐浩凯') | |
3772 self.assertEqual(tags['InstitutionName'], u'灌云县疾病预防控制中心') | |
126 | 3773 |
3774 | |
3775 def test_long_tag(self): | |
3776 i = UploadInstance(_REMOTE, 'DummyCTWithLongTag.dcm')['ID'] | |
3777 series = 'f2635388-f01d497a-15f7c06b-ad7dba06-c4c599fe' | |
3778 | |
3779 tags = DoGet(_REMOTE, '/instances/%s/tags' % i) | |
3780 self.assertTrue('0018,1020' in tags) | |
3781 self.assertEqual('SoftwareVersions', tags['0018,1020']['Name']) | |
3782 self.assertEqual('TooLong', tags['0018,1020']['Type']) | |
3783 self.assertEqual(None, tags['0018,1020']['Value']) | |
3784 | |
3785 tags = DoGet(_REMOTE, '/instances/%s/tags?ignore-length=0018-1020' % i) | |
3786 self.assertTrue('0018,1020' in tags) | |
3787 self.assertEqual('SoftwareVersions', tags['0018,1020']['Name']) | |
3788 self.assertEqual('String', tags['0018,1020']['Type']) | |
3789 self.assertTrue(tags['0018,1020']['Value'].startswith('Lorem ipsum dolor sit amet')) | |
3790 | |
3791 tags = DoGet(_REMOTE, '/instances/%s/tags?simplify' % i) | |
3792 self.assertTrue('SoftwareVersions' in tags) | |
3793 self.assertEqual(None, tags['SoftwareVersions']) | |
3794 self.assertTrue('HeartRate' in tags) | |
3795 self.assertEqual(474, int(tags['HeartRate'])) | |
3796 | |
3797 tags = DoGet(_REMOTE, '/instances/%s/simplified-tags' % i) | |
3798 self.assertTrue('SoftwareVersions' in tags) | |
3799 self.assertEqual(None, tags['SoftwareVersions']) | |
3800 | |
3801 tags = DoGet(_REMOTE, '/instances/%s/tags?simplify&ignore-length=0018-1020' % i) | |
3802 self.assertTrue('SoftwareVersions' in tags) | |
3803 self.assertTrue(tags['SoftwareVersions'].startswith('Lorem ipsum dolor sit amet')) | |
3804 | |
3805 tags = DoGet(_REMOTE, '/instances/%s/tags?simplify&ignore-length=SoftwareVersions' % i) | |
3806 self.assertTrue('SoftwareVersions' in tags) | |
3807 self.assertTrue(tags['SoftwareVersions'].startswith('Lorem ipsum dolor sit amet')) | |
3808 | |
3809 tags = DoGet(_REMOTE, '/series/%s/instances-tags' % series) | |
3810 self.assertEqual(1, len(tags)) | |
3811 self.assertTrue(i in tags.keys()) | |
3812 self.assertTrue('0018,1020' in tags[i]) | |
3813 self.assertEqual('TooLong', tags[i]['0018,1020']['Type']) | |
3814 | |
3815 tags = DoGet(_REMOTE, '/series/%s/instances-tags?ignore-length=SoftwareVersions' % series) | |
3816 self.assertEqual(1, len(tags)) | |
3817 self.assertTrue(i in tags.keys()) | |
3818 self.assertTrue('0018,1020' in tags[i]) | |
3819 self.assertEqual('String', tags[i]['0018,1020']['Type']) | |
3820 self.assertTrue(tags[i]['0018,1020']['Value'].startswith('Lorem ipsum dolor sit amet')) | |
3821 | |
127
1eea4d3a1ba9
test_extended_media
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
126
diff
changeset
|
3822 |
1eea4d3a1ba9
test_extended_media
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
126
diff
changeset
|
3823 def test_extended_media(self): |
1eea4d3a1ba9
test_extended_media
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
126
diff
changeset
|
3824 UploadInstance(_REMOTE, 'Knee/T1/IM-0001-0001.dcm') |
1eea4d3a1ba9
test_extended_media
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
126
diff
changeset
|
3825 |
1eea4d3a1ba9
test_extended_media
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
126
diff
changeset
|
3826 z = GetArchive(_REMOTE, '/patients/%s/media?extended' % DoGet(_REMOTE, '/patients')[0]) |
1eea4d3a1ba9
test_extended_media
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
126
diff
changeset
|
3827 self.assertEqual(2, len(z.namelist())) |
1eea4d3a1ba9
test_extended_media
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
126
diff
changeset
|
3828 self.assertTrue('IMAGES/IM0' in z.namelist()) |
1eea4d3a1ba9
test_extended_media
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
126
diff
changeset
|
3829 self.assertTrue('DICOMDIR' in z.namelist()) |
1eea4d3a1ba9
test_extended_media
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
126
diff
changeset
|
3830 |
1eea4d3a1ba9
test_extended_media
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
126
diff
changeset
|
3831 try: |
1eea4d3a1ba9
test_extended_media
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
126
diff
changeset
|
3832 os.remove('/tmp/DICOMDIR') |
1eea4d3a1ba9
test_extended_media
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
126
diff
changeset
|
3833 except: |
1eea4d3a1ba9
test_extended_media
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
126
diff
changeset
|
3834 # The file does not exist |
1eea4d3a1ba9
test_extended_media
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
126
diff
changeset
|
3835 pass |
1eea4d3a1ba9
test_extended_media
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
126
diff
changeset
|
3836 |
1eea4d3a1ba9
test_extended_media
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
126
diff
changeset
|
3837 z.extract('DICOMDIR', '/tmp') |
1eea4d3a1ba9
test_extended_media
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
126
diff
changeset
|
3838 a = subprocess.check_output([ FindExecutable('dciodvfy'), '/tmp/DICOMDIR' ], |
1eea4d3a1ba9
test_extended_media
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
126
diff
changeset
|
3839 stderr = subprocess.STDOUT).split('\n') |
1eea4d3a1ba9
test_extended_media
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
126
diff
changeset
|
3840 self.assertEqual(5, len(a)) |
1eea4d3a1ba9
test_extended_media
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
126
diff
changeset
|
3841 self.assertTrue(a[0].startswith('Warning')) |
1eea4d3a1ba9
test_extended_media
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
126
diff
changeset
|
3842 self.assertEqual('BasicDirectory', a[1]) |
1eea4d3a1ba9
test_extended_media
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
126
diff
changeset
|
3843 self.assertTrue('not present in standard DICOM IOD' in a[2]) |
1eea4d3a1ba9
test_extended_media
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
126
diff
changeset
|
3844 self.assertTrue('not present in standard DICOM IOD' in a[3]) |
1eea4d3a1ba9
test_extended_media
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
126
diff
changeset
|
3845 self.assertEqual('', a[4]) |
1eea4d3a1ba9
test_extended_media
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
126
diff
changeset
|
3846 |
1eea4d3a1ba9
test_extended_media
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
126
diff
changeset
|
3847 a = subprocess.check_output([ FindExecutable('dcentvfy'), '/tmp/DICOMDIR' ], |
1eea4d3a1ba9
test_extended_media
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
126
diff
changeset
|
3848 stderr = subprocess.STDOUT).split('\n') |
1eea4d3a1ba9
test_extended_media
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
126
diff
changeset
|
3849 self.assertEqual(1, len(a)) |
1eea4d3a1ba9
test_extended_media
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
126
diff
changeset
|
3850 self.assertEqual('', a[0]) |
1eea4d3a1ba9
test_extended_media
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
126
diff
changeset
|
3851 |
1eea4d3a1ba9
test_extended_media
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
126
diff
changeset
|
3852 a = subprocess.check_output([ FindExecutable('dcm2xml'), '/tmp/DICOMDIR' ]) |
1eea4d3a1ba9
test_extended_media
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
126
diff
changeset
|
3853 self.assertTrue(re.search('1.3.46.670589.11.17521.5.0.3124.2008081908590448738', a) != None) |
1eea4d3a1ba9
test_extended_media
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
126
diff
changeset
|
3854 |
1eea4d3a1ba9
test_extended_media
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
126
diff
changeset
|
3855 # Check the presence of the series description (extended tag) |
1eea4d3a1ba9
test_extended_media
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
126
diff
changeset
|
3856 self.assertTrue(re.search('T1W_aTSE', a) != None) |
1eea4d3a1ba9
test_extended_media
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
126
diff
changeset
|
3857 |
1eea4d3a1ba9
test_extended_media
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
126
diff
changeset
|
3858 os.remove('/tmp/DICOMDIR') |
1eea4d3a1ba9
test_extended_media
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
126
diff
changeset
|
3859 |
1eea4d3a1ba9
test_extended_media
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
126
diff
changeset
|
3860 |
132
149144d854bb
Orthanc.test_anonymize_relationships_1/2
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
130
diff
changeset
|
3861 def test_anonymize_relationships_1(self): |
133
f0d4c4707e64
test_anonymize_relationships_3
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
132
diff
changeset
|
3862 UploadInstance(_REMOTE, 'Knee/T1/IM-0001-0001.dcm') |
f0d4c4707e64
test_anonymize_relationships_3
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
132
diff
changeset
|
3863 UploadInstance(_REMOTE, 'Knee/T1/IM-0001-0002.dcm') |
132
149144d854bb
Orthanc.test_anonymize_relationships_1/2
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
130
diff
changeset
|
3864 study = '0a9b3153-2512774b-2d9580de-1fc3dcf6-3bd83918' |
149144d854bb
Orthanc.test_anonymize_relationships_1/2
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
130
diff
changeset
|
3865 |
149144d854bb
Orthanc.test_anonymize_relationships_1/2
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
130
diff
changeset
|
3866 anonymized = DoPost(_REMOTE, '/studies/%s/anonymize' % study, |
149144d854bb
Orthanc.test_anonymize_relationships_1/2
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
130
diff
changeset
|
3867 '{}', |
149144d854bb
Orthanc.test_anonymize_relationships_1/2
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
130
diff
changeset
|
3868 'application/json')['ID'] |
149144d854bb
Orthanc.test_anonymize_relationships_1/2
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
130
diff
changeset
|
3869 |
149144d854bb
Orthanc.test_anonymize_relationships_1/2
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
130
diff
changeset
|
3870 a = DoGet(_REMOTE, '/studies/%s/instances' % study) |
149144d854bb
Orthanc.test_anonymize_relationships_1/2
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parents:
130
diff
changeset
|
3871 self.assertEqual(2, len(a)) |
149144d854bb
Orthanc.test_anonymize_relationships_1/2
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
130
diff
changeset
|
3872 a1 = a[0]['ID'] |
149144d854bb
Orthanc.test_anonymize_relationships_1/2
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parents:
130
diff
changeset
|
3873 a2 = a[1]['ID'] |
149144d854bb
Orthanc.test_anonymize_relationships_1/2
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
130
diff
changeset
|
3874 |
149144d854bb
Orthanc.test_anonymize_relationships_1/2
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
130
diff
changeset
|
3875 b = DoGet(_REMOTE, '/studies/%s/instances' % anonymized) |
149144d854bb
Orthanc.test_anonymize_relationships_1/2
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
130
diff
changeset
|
3876 self.assertEqual(2, len(b)) |
149144d854bb
Orthanc.test_anonymize_relationships_1/2
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
130
diff
changeset
|
3877 b1 = b[0]['ID'] |
149144d854bb
Orthanc.test_anonymize_relationships_1/2
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
130
diff
changeset
|
3878 b2 = b[1]['ID'] |
149144d854bb
Orthanc.test_anonymize_relationships_1/2
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
130
diff
changeset
|
3879 |
149144d854bb
Orthanc.test_anonymize_relationships_1/2
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
130
diff
changeset
|
3880 SEQUENCE = '/instances/%s/content/ReferencedImageSequence' |
149144d854bb
Orthanc.test_anonymize_relationships_1/2
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
130
diff
changeset
|
3881 SOP = '/instances/%s/content/ReferencedImageSequence/%d/ReferencedSOPInstanceUID' |
149144d854bb
Orthanc.test_anonymize_relationships_1/2
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
130
diff
changeset
|
3882 CLASS = '/instances/%s/content/ReferencedImageSequence/%d/ReferencedSOPClassUID' |
149144d854bb
Orthanc.test_anonymize_relationships_1/2
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
130
diff
changeset
|
3883 FRAME = '/instances/%s/content/FrameOfReferenceUID' |
149144d854bb
Orthanc.test_anonymize_relationships_1/2
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
130
diff
changeset
|
3884 |
149144d854bb
Orthanc.test_anonymize_relationships_1/2
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
130
diff
changeset
|
3885 self.assertEqual(DoGet(_REMOTE, FRAME % a1), |
149144d854bb
Orthanc.test_anonymize_relationships_1/2
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
130
diff
changeset
|
3886 DoGet(_REMOTE, FRAME % a2)) |
149144d854bb
Orthanc.test_anonymize_relationships_1/2
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
130
diff
changeset
|
3887 self.assertEqual(DoGet(_REMOTE, FRAME % b1), |
149144d854bb
Orthanc.test_anonymize_relationships_1/2
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
130
diff
changeset
|
3888 DoGet(_REMOTE, FRAME % b2)) |
149144d854bb
Orthanc.test_anonymize_relationships_1/2
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
130
diff
changeset
|
3889 self.assertNotEqual(DoGet(_REMOTE, FRAME % a1), |
149144d854bb
Orthanc.test_anonymize_relationships_1/2
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
130
diff
changeset
|
3890 DoGet(_REMOTE, FRAME % b1)) |
149144d854bb
Orthanc.test_anonymize_relationships_1/2
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
130
diff
changeset
|
3891 self.assertNotEqual(DoGet(_REMOTE, FRAME % a2), |
149144d854bb
Orthanc.test_anonymize_relationships_1/2
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
130
diff
changeset
|
3892 DoGet(_REMOTE, FRAME % b2)) |
149144d854bb
Orthanc.test_anonymize_relationships_1/2
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
130
diff
changeset
|
3893 |
149144d854bb
Orthanc.test_anonymize_relationships_1/2
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
130
diff
changeset
|
3894 self.assertEqual(3, len(DoGet(_REMOTE, SEQUENCE % a1))) |
149144d854bb
Orthanc.test_anonymize_relationships_1/2
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
130
diff
changeset
|
3895 self.assertEqual(3, len(DoGet(_REMOTE, SEQUENCE % a2))) |
149144d854bb
Orthanc.test_anonymize_relationships_1/2
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
130
diff
changeset
|
3896 self.assertEqual(3, len(DoGet(_REMOTE, SEQUENCE % b1))) |
149144d854bb
Orthanc.test_anonymize_relationships_1/2
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
130
diff
changeset
|
3897 self.assertEqual(3, len(DoGet(_REMOTE, SEQUENCE % b2))) |
149144d854bb
Orthanc.test_anonymize_relationships_1/2
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
130
diff
changeset
|
3898 |
149144d854bb
Orthanc.test_anonymize_relationships_1/2
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
130
diff
changeset
|
3899 for i in range(3): |
149144d854bb
Orthanc.test_anonymize_relationships_1/2
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
130
diff
changeset
|
3900 self.assertEqual(DoGet(_REMOTE, SOP % (a1, i)), |
149144d854bb
Orthanc.test_anonymize_relationships_1/2
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
130
diff
changeset
|
3901 DoGet(_REMOTE, SOP % (a2, i))) |
149144d854bb
Orthanc.test_anonymize_relationships_1/2
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
130
diff
changeset
|
3902 self.assertEqual(DoGet(_REMOTE, SOP % (b1, i)), |
149144d854bb
Orthanc.test_anonymize_relationships_1/2
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
130
diff
changeset
|
3903 DoGet(_REMOTE, SOP % (b2, i))) |
149144d854bb
Orthanc.test_anonymize_relationships_1/2
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
130
diff
changeset
|
3904 self.assertNotEqual(DoGet(_REMOTE, SOP % (a1, i)), |
149144d854bb
Orthanc.test_anonymize_relationships_1/2
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
130
diff
changeset
|
3905 DoGet(_REMOTE, SOP % (b1, i))) |
149144d854bb
Orthanc.test_anonymize_relationships_1/2
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
130
diff
changeset
|
3906 self.assertNotEqual(DoGet(_REMOTE, SOP % (a2, i)), |
149144d854bb
Orthanc.test_anonymize_relationships_1/2
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
130
diff
changeset
|
3907 DoGet(_REMOTE, SOP % (b2, i))) |
149144d854bb
Orthanc.test_anonymize_relationships_1/2
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
130
diff
changeset
|
3908 self.assertEqual(DoGet(_REMOTE, CLASS % (a1, i)), |
149144d854bb
Orthanc.test_anonymize_relationships_1/2
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
130
diff
changeset
|
3909 DoGet(_REMOTE, CLASS % (b1, i))) |
149144d854bb
Orthanc.test_anonymize_relationships_1/2
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
130
diff
changeset
|
3910 self.assertEqual(DoGet(_REMOTE, CLASS % (a2, i)), |
149144d854bb
Orthanc.test_anonymize_relationships_1/2
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
130
diff
changeset
|
3911 DoGet(_REMOTE, CLASS % (b2, i))) |
149144d854bb
Orthanc.test_anonymize_relationships_1/2
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
130
diff
changeset
|
3912 |
149144d854bb
Orthanc.test_anonymize_relationships_1/2
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
130
diff
changeset
|
3913 |
149144d854bb
Orthanc.test_anonymize_relationships_1/2
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
130
diff
changeset
|
3914 def test_anonymize_relationships_2(self): |
133
f0d4c4707e64
test_anonymize_relationships_3
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
132
diff
changeset
|
3915 UploadInstance(_REMOTE, 'Comunix/Ct/IM-0001-0001.dcm') |
f0d4c4707e64
test_anonymize_relationships_3
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
132
diff
changeset
|
3916 UploadInstance(_REMOTE, 'Comunix/Ct/IM-0001-0002.dcm') |
132
149144d854bb
Orthanc.test_anonymize_relationships_1/2
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
130
diff
changeset
|
3917 study = '6c65289b-db2fcb71-7eaf73f4-8e12470c-a4d6d7cf' |
149144d854bb
Orthanc.test_anonymize_relationships_1/2
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
130
diff
changeset
|
3918 |
149144d854bb
Orthanc.test_anonymize_relationships_1/2
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
130
diff
changeset
|
3919 anonymized = DoPost(_REMOTE, '/studies/%s/anonymize' % study, |
149144d854bb
Orthanc.test_anonymize_relationships_1/2
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
130
diff
changeset
|
3920 '{}', |
149144d854bb
Orthanc.test_anonymize_relationships_1/2
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parents:
130
diff
changeset
|
3921 'application/json')['ID'] |
149144d854bb
Orthanc.test_anonymize_relationships_1/2
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
130
diff
changeset
|
3922 |
149144d854bb
Orthanc.test_anonymize_relationships_1/2
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parents:
130
diff
changeset
|
3923 a = DoGet(_REMOTE, '/studies/%s/instances' % study) |
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parents:
130
diff
changeset
|
3924 self.assertEqual(2, len(a)) |
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parents:
130
diff
changeset
|
3925 a1 = a[0]['ID'] |
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parents:
130
diff
changeset
|
3926 a2 = a[1]['ID'] |
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Sebastien Jodogne <s.jodogne@gmail.com>
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130
diff
changeset
|
3927 |
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Orthanc.test_anonymize_relationships_1/2
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parents:
130
diff
changeset
|
3928 b = DoGet(_REMOTE, '/studies/%s/instances' % anonymized) |
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diff
changeset
|
3929 self.assertEqual(2, len(b)) |
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130
diff
changeset
|
3930 b1 = b[0]['ID'] |
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130
diff
changeset
|
3931 b2 = b[1]['ID'] |
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Sebastien Jodogne <s.jodogne@gmail.com>
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130
diff
changeset
|
3932 |
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Orthanc.test_anonymize_relationships_1/2
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130
diff
changeset
|
3933 SEQUENCE = '/instances/%s/content/SourceImageSequence' |
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130
diff
changeset
|
3934 SOP = '/instances/%s/content/SourceImageSequence/%d/ReferencedSOPInstanceUID' |
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diff
changeset
|
3935 CLASS = '/instances/%s/content/SourceImageSequence/%d/ReferencedSOPClassUID' |
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diff
changeset
|
3936 |
149144d854bb
Orthanc.test_anonymize_relationships_1/2
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parents:
130
diff
changeset
|
3937 self.assertEqual(1, len(DoGet(_REMOTE, SEQUENCE % a1))) |
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diff
changeset
|
3938 self.assertEqual(1, len(DoGet(_REMOTE, SEQUENCE % a2))) |
149144d854bb
Orthanc.test_anonymize_relationships_1/2
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parents:
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diff
changeset
|
3939 self.assertEqual(1, len(DoGet(_REMOTE, SEQUENCE % b1))) |
149144d854bb
Orthanc.test_anonymize_relationships_1/2
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parents:
130
diff
changeset
|
3940 self.assertEqual(1, len(DoGet(_REMOTE, SEQUENCE % b2))) |
149144d854bb
Orthanc.test_anonymize_relationships_1/2
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parents:
130
diff
changeset
|
3941 self.assertEqual(DoGet(_REMOTE, SOP % (a1, 0)), |
149144d854bb
Orthanc.test_anonymize_relationships_1/2
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parents:
130
diff
changeset
|
3942 DoGet(_REMOTE, SOP % (a2, 0))) |
149144d854bb
Orthanc.test_anonymize_relationships_1/2
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parents:
130
diff
changeset
|
3943 self.assertEqual(DoGet(_REMOTE, SOP % (b1, 0)), |
149144d854bb
Orthanc.test_anonymize_relationships_1/2
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parents:
130
diff
changeset
|
3944 DoGet(_REMOTE, SOP % (b2, 0))) |
149144d854bb
Orthanc.test_anonymize_relationships_1/2
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parents:
130
diff
changeset
|
3945 self.assertNotEqual(DoGet(_REMOTE, SOP % (a1, 0)), |
149144d854bb
Orthanc.test_anonymize_relationships_1/2
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
130
diff
changeset
|
3946 DoGet(_REMOTE, SOP % (b1, 0))) |
149144d854bb
Orthanc.test_anonymize_relationships_1/2
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
130
diff
changeset
|
3947 self.assertNotEqual(DoGet(_REMOTE, SOP % (a2, 0)), |
149144d854bb
Orthanc.test_anonymize_relationships_1/2
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
130
diff
changeset
|
3948 DoGet(_REMOTE, SOP % (b2, 0))) |
149144d854bb
Orthanc.test_anonymize_relationships_1/2
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
130
diff
changeset
|
3949 self.assertEqual(DoGet(_REMOTE, CLASS % (a1, 0)), |
149144d854bb
Orthanc.test_anonymize_relationships_1/2
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parents:
130
diff
changeset
|
3950 DoGet(_REMOTE, CLASS % (b1, 0))) |
149144d854bb
Orthanc.test_anonymize_relationships_1/2
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
130
diff
changeset
|
3951 self.assertEqual(DoGet(_REMOTE, CLASS % (a2, 0)), |
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Orthanc.test_anonymize_relationships_1/2
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
130
diff
changeset
|
3952 DoGet(_REMOTE, CLASS % (b2, 0))) |
133
f0d4c4707e64
test_anonymize_relationships_3
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
132
diff
changeset
|
3953 |
f0d4c4707e64
test_anonymize_relationships_3
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
132
diff
changeset
|
3954 |
f0d4c4707e64
test_anonymize_relationships_3
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
132
diff
changeset
|
3955 def test_anonymize_relationships_3(self): |
f0d4c4707e64
test_anonymize_relationships_3
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
132
diff
changeset
|
3956 sr1 = UploadInstance(_REMOTE, 'HierarchicalAnonymization/StructuredReports/IM0')['ID'] |
f0d4c4707e64
test_anonymize_relationships_3
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
132
diff
changeset
|
3957 mr1 = UploadInstance(_REMOTE, 'HierarchicalAnonymization/StructuredReports/IM631')['ID'] |
f0d4c4707e64
test_anonymize_relationships_3
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
132
diff
changeset
|
3958 study = 'ef351eb2-c1147229-062736b8-35a151e3-e32d526b' |
f0d4c4707e64
test_anonymize_relationships_3
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
132
diff
changeset
|
3959 |
f0d4c4707e64
test_anonymize_relationships_3
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
132
diff
changeset
|
3960 anonymized = DoPost(_REMOTE, '/studies/%s/anonymize' % study, |
f0d4c4707e64
test_anonymize_relationships_3
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
132
diff
changeset
|
3961 { "Keep" : [ "ContentSequence" ] }) ['ID'] |
f0d4c4707e64
test_anonymize_relationships_3
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
132
diff
changeset
|
3962 |
f0d4c4707e64
test_anonymize_relationships_3
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
132
diff
changeset
|
3963 a = DoGet(_REMOTE, '/studies/%s/instances' % anonymized) |
f0d4c4707e64
test_anonymize_relationships_3
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
132
diff
changeset
|
3964 self.assertEqual(2, len(a)) |
f0d4c4707e64
test_anonymize_relationships_3
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
132
diff
changeset
|
3965 |
f0d4c4707e64
test_anonymize_relationships_3
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
132
diff
changeset
|
3966 if DoGet(_REMOTE, '/instances/%s/content/Modality' % a[0]['ID']) == 'SR': |
f0d4c4707e64
test_anonymize_relationships_3
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
132
diff
changeset
|
3967 sr2 = a[0]['ID'] |
f0d4c4707e64
test_anonymize_relationships_3
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
132
diff
changeset
|
3968 mr2 = a[1]['ID'] |
f0d4c4707e64
test_anonymize_relationships_3
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
132
diff
changeset
|
3969 else: |
f0d4c4707e64
test_anonymize_relationships_3
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
132
diff
changeset
|
3970 sr2 = a[1]['ID'] |
f0d4c4707e64
test_anonymize_relationships_3
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
132
diff
changeset
|
3971 mr2 = a[0]['ID'] |
f0d4c4707e64
test_anonymize_relationships_3
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
132
diff
changeset
|
3972 |
f0d4c4707e64
test_anonymize_relationships_3
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
132
diff
changeset
|
3973 self.assertEqual(DoGet(_REMOTE, '/instances/%s/content/Modality' % sr1), |
f0d4c4707e64
test_anonymize_relationships_3
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
132
diff
changeset
|
3974 DoGet(_REMOTE, '/instances/%s/content/Modality' % sr2)) |
f0d4c4707e64
test_anonymize_relationships_3
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
132
diff
changeset
|
3975 self.assertEqual(DoGet(_REMOTE, '/instances/%s/content/Modality' % mr1), |
f0d4c4707e64
test_anonymize_relationships_3
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
132
diff
changeset
|
3976 DoGet(_REMOTE, '/instances/%s/content/Modality' % mr2)) |
f0d4c4707e64
test_anonymize_relationships_3
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
132
diff
changeset
|
3977 |
f0d4c4707e64
test_anonymize_relationships_3
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
132
diff
changeset
|
3978 mrUid1 = DoGet(_REMOTE, '/instances/%s' % mr1)['MainDicomTags']['SOPInstanceUID'] |
f0d4c4707e64
test_anonymize_relationships_3
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
132
diff
changeset
|
3979 mrUid2 = DoGet(_REMOTE, '/instances/%s' % mr2)['MainDicomTags']['SOPInstanceUID'] |
f0d4c4707e64
test_anonymize_relationships_3
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
132
diff
changeset
|
3980 mrSeries1 = DoGet(_REMOTE, '/instances/%s/content/SeriesInstanceUID' % mr1).strip('\x00') |
f0d4c4707e64
test_anonymize_relationships_3
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
132
diff
changeset
|
3981 mrSeries2 = DoGet(_REMOTE, '/instances/%s/content/SeriesInstanceUID' % mr2).strip('\x00') |
f0d4c4707e64
test_anonymize_relationships_3
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
132
diff
changeset
|
3982 mrStudy1 = DoGet(_REMOTE, '/instances/%s/content/StudyInstanceUID' % mr1).strip('\x00') |
f0d4c4707e64
test_anonymize_relationships_3
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
132
diff
changeset
|
3983 mrStudy2 = DoGet(_REMOTE, '/instances/%s/content/StudyInstanceUID' % mr2).strip('\x00') |
f0d4c4707e64
test_anonymize_relationships_3
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
132
diff
changeset
|
3984 |
f0d4c4707e64
test_anonymize_relationships_3
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
132
diff
changeset
|
3985 PATH1 = '/instances/%s/content/CurrentRequestedProcedureEvidenceSequence' |
f0d4c4707e64
test_anonymize_relationships_3
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
132
diff
changeset
|
3986 PATH2 = PATH1 + '/0/ReferencedSeriesSequence' |
f0d4c4707e64
test_anonymize_relationships_3
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
132
diff
changeset
|
3987 PATH3 = PATH2 + '/0/ReferencedSOPSequence' |
f0d4c4707e64
test_anonymize_relationships_3
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
132
diff
changeset
|
3988 PATH4 = PATH3 + '/0/ReferencedSOPInstanceUID' |
f0d4c4707e64
test_anonymize_relationships_3
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
132
diff
changeset
|
3989 PATH5 = PATH3 + '/0/ReferencedSOPClassUID' |
f0d4c4707e64
test_anonymize_relationships_3
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
132
diff
changeset
|
3990 |
f0d4c4707e64
test_anonymize_relationships_3
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
132
diff
changeset
|
3991 self.assertEqual(1, len(DoGet(_REMOTE, PATH1 % sr1))) |
f0d4c4707e64
test_anonymize_relationships_3
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
132
diff
changeset
|
3992 self.assertEqual(1, len(DoGet(_REMOTE, PATH2 % sr1))) |
f0d4c4707e64
test_anonymize_relationships_3
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
132
diff
changeset
|
3993 self.assertEqual(1, len(DoGet(_REMOTE, PATH3 % sr1))) |
f0d4c4707e64
test_anonymize_relationships_3
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
132
diff
changeset
|
3994 self.assertEqual(DoGet(_REMOTE, PATH4 % sr1), mrUid1) |
f0d4c4707e64
test_anonymize_relationships_3
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
132
diff
changeset
|
3995 self.assertEqual(mrSeries1, DoGet(_REMOTE, (PATH2 + '/0/SeriesInstanceUID') % sr1).strip('\x00')) |
f0d4c4707e64
test_anonymize_relationships_3
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
132
diff
changeset
|
3996 self.assertEqual(mrStudy1, DoGet(_REMOTE, (PATH1 + '/0/StudyInstanceUID') % sr1).strip('\x00')) |
f0d4c4707e64
test_anonymize_relationships_3
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
132
diff
changeset
|
3997 |
f0d4c4707e64
test_anonymize_relationships_3
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
132
diff
changeset
|
3998 self.assertEqual(1, len(DoGet(_REMOTE, PATH1 % sr2))) |
f0d4c4707e64
test_anonymize_relationships_3
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
132
diff
changeset
|
3999 self.assertEqual(1, len(DoGet(_REMOTE, PATH2 % sr2))) |
f0d4c4707e64
test_anonymize_relationships_3
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
132
diff
changeset
|
4000 self.assertEqual(1, len(DoGet(_REMOTE, PATH3 % sr2))) |
f0d4c4707e64
test_anonymize_relationships_3
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
132
diff
changeset
|
4001 self.assertEqual(DoGet(_REMOTE, PATH5 % sr1), DoGet(_REMOTE, PATH5 % sr2)) |
f0d4c4707e64
test_anonymize_relationships_3
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
132
diff
changeset
|
4002 |
f0d4c4707e64
test_anonymize_relationships_3
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
132
diff
changeset
|
4003 self.assertEqual(mrUid2, DoGet(_REMOTE, PATH4 % sr2).strip('\x00')) |
f0d4c4707e64
test_anonymize_relationships_3
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
132
diff
changeset
|
4004 self.assertEqual(mrSeries2, DoGet(_REMOTE, (PATH2 + '/0/SeriesInstanceUID') % sr2).strip('\x00')) |
f0d4c4707e64
test_anonymize_relationships_3
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
132
diff
changeset
|
4005 self.assertEqual(mrStudy2, DoGet(_REMOTE, (PATH1 + '/0/StudyInstanceUID') % sr2).strip('\x00')) |
f0d4c4707e64
test_anonymize_relationships_3
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
132
diff
changeset
|
4006 |
f0d4c4707e64
test_anonymize_relationships_3
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
132
diff
changeset
|
4007 content1 = DoGet(_REMOTE, '/instances/%s/tags?simplify' % sr1) ['ContentSequence'] |
f0d4c4707e64
test_anonymize_relationships_3
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
132
diff
changeset
|
4008 content2 = DoGet(_REMOTE, '/instances/%s/tags?simplify' % sr2) ['ContentSequence'] |
f0d4c4707e64
test_anonymize_relationships_3
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
132
diff
changeset
|
4009 self.assertEqual(str(content1), str(content2)) |
141
5de178abe4d8
test_bitbucket_issue_94
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
138
diff
changeset
|
4010 |
5de178abe4d8
test_bitbucket_issue_94
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
138
diff
changeset
|
4011 |
5de178abe4d8
test_bitbucket_issue_94
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
138
diff
changeset
|
4012 def test_bitbucket_issue_94(self): |
5de178abe4d8
test_bitbucket_issue_94
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
138
diff
changeset
|
4013 # "a simple instance modification should not modify FrameOfReferenceUID + ..." |
319 | 4014 # https://bugs.orthanc-server.com/show_bug.cgi?id=94 |
141
5de178abe4d8
test_bitbucket_issue_94
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
138
diff
changeset
|
4015 i = UploadInstance(_REMOTE, 'Issue94.dcm')['ID'] |
5de178abe4d8
test_bitbucket_issue_94
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
138
diff
changeset
|
4016 |
5de178abe4d8
test_bitbucket_issue_94
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
138
diff
changeset
|
4017 source = DoGet(_REMOTE, '/instances/%s/attachments/dicom/data' % i) |
5de178abe4d8
test_bitbucket_issue_94
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
138
diff
changeset
|
4018 |
5de178abe4d8
test_bitbucket_issue_94
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
138
diff
changeset
|
4019 modified = DoPost(_REMOTE, '/instances/%s/modify' % i, |
5de178abe4d8
test_bitbucket_issue_94
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
138
diff
changeset
|
4020 { "Replace" : {"PatientID" : "toto"}, "Force": True}) |
5de178abe4d8
test_bitbucket_issue_94
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
138
diff
changeset
|
4021 |
5de178abe4d8
test_bitbucket_issue_94
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
138
diff
changeset
|
4022 anonymized = DoPost(_REMOTE, '/instances/%s/anonymize' % i) |
5de178abe4d8
test_bitbucket_issue_94
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
138
diff
changeset
|
4023 |
5de178abe4d8
test_bitbucket_issue_94
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
138
diff
changeset
|
4024 a = ExtractDicomTags(source, [ 'FrameOfReferenceUID' ]) |
5de178abe4d8
test_bitbucket_issue_94
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
138
diff
changeset
|
4025 self.assertEqual(1, len(a)) |
5de178abe4d8
test_bitbucket_issue_94
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
138
diff
changeset
|
4026 |
5de178abe4d8
test_bitbucket_issue_94
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
138
diff
changeset
|
4027 b = ExtractDicomTags(modified, [ 'FrameOfReferenceUID' ]) |
5de178abe4d8
test_bitbucket_issue_94
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
138
diff
changeset
|
4028 self.assertEqual(1, len(b)) |
5de178abe4d8
test_bitbucket_issue_94
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
138
diff
changeset
|
4029 |
5de178abe4d8
test_bitbucket_issue_94
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
138
diff
changeset
|
4030 c = ExtractDicomTags(anonymized, [ 'FrameOfReferenceUID' ]) |
5de178abe4d8
test_bitbucket_issue_94
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
138
diff
changeset
|
4031 self.assertEqual(1, len(c)) |
5de178abe4d8
test_bitbucket_issue_94
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
138
diff
changeset
|
4032 |
5de178abe4d8
test_bitbucket_issue_94
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
138
diff
changeset
|
4033 self.assertEqual(a, b) # Modified DICOM |
5de178abe4d8
test_bitbucket_issue_94
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
138
diff
changeset
|
4034 self.assertNotEqual(a, c) # Anonymized DICOM |
143
28d50ffac07d
test_metadata_origin
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
142
diff
changeset
|
4035 |
28d50ffac07d
test_metadata_origin
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
142
diff
changeset
|
4036 |
28d50ffac07d
test_metadata_origin
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
142
diff
changeset
|
4037 def test_metadata_origin(self): |
28d50ffac07d
test_metadata_origin
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parents:
142
diff
changeset
|
4038 # Upload using the REST API |
144
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4039 i = UploadInstance(_REMOTE, 'Knee/T1/IM-0001-0001.dcm')['ID'] |
143
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4040 self.assertEqual('RestApi', DoGet(_REMOTE, '/instances/%s/metadata/Origin' % i)) |
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4041 self.assertEqual('', DoGet(_REMOTE, '/instances/%s/metadata/RemoteAET' % i)) |
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4042 self.assertNotEqual('', DoGet(_REMOTE, '/instances/%s/metadata/RemoteIP' % i)) |
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4043 self.assertRaises(Exception, lambda: DoGet(_REMOTE, '/instances/%s/metadata/CalledAET' % i)) |
315 | 4044 |
4045 # "HttpUsername" is empty iff "AuthenticationEnabled" is "false" | |
4046 self.assertTrue(DoGet(_REMOTE, '/instances/%s/metadata/HttpUsername' % i) in [ '', 'alice' ]) | |
4047 | |
144
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4048 m = DoGet(_REMOTE, '/instances/%s/metadata?expand' % i) |
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4049 self.assertEqual('RestApi', m['Origin']) |
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4050 self.assertEqual('', m['RemoteAET']) |
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4051 self.assertNotEqual('', m['RemoteIP']) |
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4052 self.assertFalse('CalledAET' in m) |
315 | 4053 self.assertTrue('HttpUsername' in m) |
4054 self.assertTrue(m['HttpUsername'] in [ '', 'alice' ]) | |
144
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4055 |
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4056 self.assertEqual('1.2.840.10008.1.2.4.91', m['TransferSyntax']) |
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4057 self.assertEqual('1.2.840.10008.5.1.4.1.1.4', m['SopClassUid']) |
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4058 self.assertEqual('1', m['IndexInSeries']) |
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4059 self.assertTrue('ReceptionDate' in m) |
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4060 |
143
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4061 DoDelete(_REMOTE, '/instances/%s' % i) |
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4062 |
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4063 # Upload using the DICOM protocol |
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4064 subprocess.check_call([ FindExecutable('storescu'), |
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4065 _REMOTE['Server'], str(_REMOTE['DicomPort']), |
144
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4066 GetDatabasePath('Knee/T1/IM-0001-0001.dcm'), |
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4067 '-xw' ]) # Propose JPEG2000 |
143
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4068 self.assertEqual('DicomProtocol', DoGet(_REMOTE, '/instances/%s/metadata/Origin' % i)) |
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4069 self.assertEqual('STORESCU', DoGet(_REMOTE, '/instances/%s/metadata/RemoteAET' % i)) |
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4070 self.assertNotEqual('', DoGet(_REMOTE, '/instances/%s/metadata/RemoteIP' % i)) |
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4071 self.assertEqual('ANY-SCP', DoGet(_REMOTE, '/instances/%s/metadata/CalledAET' % i)) |
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4072 self.assertRaises(Exception, lambda: DoGet(_REMOTE, '/instances/%s/metadata/HttpUsername' % i)) |
144
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4073 |
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4074 m = DoGet(_REMOTE, '/instances/%s/metadata?expand' % i) |
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4075 self.assertEqual('DicomProtocol', m['Origin']) |
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4076 self.assertEqual('STORESCU', m['RemoteAET']) |
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4077 self.assertNotEqual('', m['RemoteIP']) |
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4078 self.assertEqual('ANY-SCP', m['CalledAET']) |
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4079 self.assertFalse('HttpUsername' in m) |
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4080 |
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4081 self.assertEqual('1.2.840.10008.1.2.4.91', m['TransferSyntax']) |
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4082 self.assertEqual('1.2.840.10008.5.1.4.1.1.4', m['SopClassUid']) |
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4083 self.assertEqual('1', m['IndexInSeries']) |
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4084 self.assertTrue('ReceptionDate' in m) |
147 | 4085 |
4086 | |
4087 def test_lua_deadlock(self): | |
4088 # Rana Asim Wajid (2018-07-14): "It does seem that the issue | |
4089 # is with the lua script I'm using for conversion of images to | |
4090 # JPEG2000. When the script is used with 1.4.0 the first | |
4091 # instance appears to be stored and then everything just | |
4092 # halts, ie Orthanc wont respond to anything after that." | |
4093 # https://groups.google.com/d/msg/orthanc-users/Rc-Beb42xc8/JUgdzrmCAgAJ | |
174 | 4094 InstallLuaScriptFromPath(_REMOTE, 'Lua/Jpeg2000Conversion.lua') |
147 | 4095 |
4096 subprocess.check_call([ FindExecutable('storescu'), | |
4097 _REMOTE['Server'], str(_REMOTE['DicomPort']), | |
4098 GetDatabasePath('Brainix/Flair/IM-0001-0001.dcm'), | |
4099 GetDatabasePath('Brainix/Flair/IM-0001-0002.dcm'), | |
4100 ]) | |
4101 | |
4102 instances = DoGet(_REMOTE, '/instances') | |
4103 self.assertEqual(2, len(instances)) | |
4104 | |
4105 t1 = DoGet(_REMOTE, '/instances/%s/metadata/TransferSyntax' % instances[0]) | |
4106 t2 = DoGet(_REMOTE, '/instances/%s/metadata/TransferSyntax' % instances[1]) | |
175 | 4107 self.assertEqual('1.2.840.10008.1.2.4.90', t1) # this will fail if libgdcm-tools is not installed |
147 | 4108 self.assertEqual(t1, t2); |
154
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4109 |
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4110 |
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4111 def test_find_group_length(self): |
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4112 # Orthanc <= 1.4.1 fails to answer C-FIND queries that contain |
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4113 # one of the Generic Group Length tags (*, 0x0000) |
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4114 a = UploadInstance(_REMOTE, 'Brainix/Flair/IM-0001-0001.dcm')['ID'] |
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4115 result = CallFindScu([ '-k', '0008,0052=STUDY', '-k', '0008,0000=80' ]) |
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4116 self.assertFalse('UnableToProcess' in result) |
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4117 self.assertFalse('E:' in result) |
179
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4118 |
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4119 |
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4120 def test_split(self): |
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4121 UploadInstance(_REMOTE, 'Knee/T1/IM-0001-0001.dcm') |
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4122 UploadInstance(_REMOTE, 'Knee/T2/IM-0001-0001.dcm') |
254
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4123 knee1Sop = '1.3.46.670589.11.17521.5.0.3124.2008081908590448738' |
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4124 knee2Sop = '1.3.46.670589.11.17521.5.0.3124.2008081909113806560' |
179
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4125 study = '0a9b3153-2512774b-2d9580de-1fc3dcf6-3bd83918' |
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4126 t1 = '6de73705-c4e65c1b-9d9ea1b5-cabcd8e7-f15e4285' |
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4127 t2 = 'bbf7a453-0d34251a-03663b55-46bb31b9-ffd74c59' |
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4128 |
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4129 self.assertEqual(1, len(DoGet(_REMOTE, '/studies'))) |
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4130 self.assertEqual(2, len(DoGet(_REMOTE, '/series'))) |
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4131 |
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4132 info = DoGet(_REMOTE, '/studies/%s' % study) |
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4133 self.assertTrue('ReferringPhysicianName' in info['MainDicomTags']) |
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4134 |
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4135 job = MonitorJob2(_REMOTE, lambda: DoPost |
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4136 (_REMOTE, '/studies/%s/split' % study, { |
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4137 'Series' : [ t2 ], |
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4138 'Replace' : { 'PatientName' : 'Hello' }, |
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4139 'Remove' : [ 'ReferringPhysicianName' ], |
181 | 4140 'KeepSource' : False, |
4141 'Asynchronous' : True | |
179
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4142 })) |
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4143 |
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4144 self.assertNotEqual(None, job) |
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4145 |
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4146 studies = set(DoGet(_REMOTE, '/studies')) |
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4147 self.assertEqual(2, len(studies)) |
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4148 |
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4149 series = set(DoGet(_REMOTE, '/series')) |
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4150 self.assertEqual(2, len(series)) |
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4151 self.assertTrue(t1 in series) |
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4152 |
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4153 study2 = DoGet(_REMOTE, '/jobs/%s' % job)['Content']['TargetStudy'] |
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4154 self.assertTrue(study in studies) |
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4155 self.assertTrue(study2 in studies) |
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4156 |
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4157 info = DoGet(_REMOTE, '/studies/%s' % study2) |
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4158 self.assertTrue('Hello', info['PatientMainDicomTags']['PatientName']) |
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4159 self.assertFalse('ReferringPhysicianName' in info['MainDicomTags']) |
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4160 |
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4161 sopInstanceUids = set() |
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4162 for i in DoGet(_REMOTE, '/instances?expand'): |
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4163 sopInstanceUids.add(i['MainDicomTags']['SOPInstanceUID']) |
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4164 |
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4165 self.assertTrue(knee1Sop in sopInstanceUids) |
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4166 |
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4167 # Fails if Orthanc <= 1.5.7 |
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4168 self.assertFalse(knee2Sop in sopInstanceUids) # Because "KeepSource" is False |
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4169 |
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|
4170 # One original instance is kept, another one is added because of the split |
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4171 self.assertEqual(2, len(sopInstanceUids)) |
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4172 |
179
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4173 |
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4174 def test_merge(self): |
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4175 UploadInstance(_REMOTE, 'Knee/T1/IM-0001-0001.dcm') |
254
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4176 UploadInstance(_REMOTE, 'Brainix/Flair/IM-0001-0001.dcm') |
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4177 kneeSop = '1.3.46.670589.11.17521.5.0.3124.2008081908590448738' |
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4178 brainixSop = '1.3.46.670589.11.0.0.11.4.2.0.8743.5.5396.2006120114314079549' |
179
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4179 knee = '0a9b3153-2512774b-2d9580de-1fc3dcf6-3bd83918' |
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4180 t1 = '6de73705-c4e65c1b-9d9ea1b5-cabcd8e7-f15e4285' |
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4181 brainix = '27f7126f-4f66fb14-03f4081b-f9341db2-53925988' |
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4182 flair = '1e2c125c-411b8e86-3f4fe68e-a7584dd3-c6da78f0' |
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4183 |
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4184 self.assertEqual(2, len(DoGet(_REMOTE, '/studies'))) |
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4185 self.assertEqual(2, len(DoGet(_REMOTE, '/series'))) |
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4186 |
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4187 job = MonitorJob2(_REMOTE, lambda: DoPost |
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4188 (_REMOTE, '/studies/%s/merge' % knee, { |
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4189 'Resources' : [ brainix ], |
181 | 4190 'KeepSource' : True, |
4191 'Synchronous' : False | |
179
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4192 })) |
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4193 |
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4194 self.assertNotEqual(None, job) |
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4195 |
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4196 studies = set(DoGet(_REMOTE, '/studies')) |
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4197 self.assertEqual(2, len(studies)) |
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4198 self.assertTrue(knee in studies) |
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4199 self.assertTrue(brainix in studies) |
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4200 |
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4201 series = set(DoGet(_REMOTE, '/studies/%s' % knee)['Series']) |
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4202 self.assertTrue(t1 in series) |
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4203 series.remove(t1) |
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4204 self.assertEqual(1, len(series)) |
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4205 |
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4206 instances = DoGet(_REMOTE, '/series/%s' % list(series)[0])['Instances'] |
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4207 self.assertEqual(1, len(instances)) |
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4208 merged = DoGet(_REMOTE, '/instances/%s/tags?simplify' % instances[0]) |
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4209 |
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4210 instances = DoGet(_REMOTE, '/series/%s' % t1)['Instances'] |
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4211 self.assertEqual(1, len(instances)) |
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4212 a = DoGet(_REMOTE, '/instances/%s/tags?simplify' % instances[0]) |
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4213 |
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4214 instances = DoGet(_REMOTE, '/series/%s' % flair)['Instances'] |
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4215 self.assertEqual(1, len(instances)) |
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4216 b = DoGet(_REMOTE, '/instances/%s/tags?simplify' % instances[0]) |
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4217 |
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4218 tags = DoGet(_REMOTE, '/studies/%s' % knee) |
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4219 |
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4220 for key in tags['PatientMainDicomTags']: |
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4221 self.assertEqual(a[key], merged[key]) |
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4222 if (key in b and key != 'PatientSex'): |
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4223 self.assertNotEqual(a[key], b[key]) |
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4224 |
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4225 for key in tags['MainDicomTags']: |
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4226 # Not in the patient/study module |
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4227 if (not key in [ 'InstitutionName', |
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4228 'RequestingPhysician', |
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4229 'RequestedProcedureDescription', ]): |
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4230 self.assertEqual(a[key], merged[key]) |
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4231 if (key in b): |
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4232 self.assertNotEqual(a[key], b[key]) |
254
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4233 |
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4234 sopInstanceUids = set() |
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4235 for i in DoGet(_REMOTE, '/instances?expand'): |
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4236 sopInstanceUids.add(i['MainDicomTags']['SOPInstanceUID']) |
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4237 |
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4238 self.assertTrue(kneeSop in sopInstanceUids) |
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4239 self.assertTrue(brainixSop in sopInstanceUids) |
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4240 |
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4241 # Fails if Orthanc <= 1.5.7 |
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4242 # The 2 original instances are kept, another one is added because of the merge |
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4243 self.assertEqual(3, len(sopInstanceUids)) |
179
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4244 |
187 | 4245 |
4246 def test_async_archive(self): | |
4247 # Testing the asynchronous generation of archives/medias (new | |
4248 # in Orthanc 1.4.3) | |
4249 UploadInstance(_REMOTE, 'Knee/T1/IM-0001-0001.dcm') | |
4250 UploadInstance(_REMOTE, 'Knee/T2/IM-0001-0001.dcm') | |
4251 | |
4252 kneeT1 = '6de73705-c4e65c1b-9d9ea1b5-cabcd8e7-f15e4285' | |
4253 kneeT2 = 'bbf7a453-0d34251a-03663b55-46bb31b9-ffd74c59' | |
4254 | |
4255 job = MonitorJob2(_REMOTE, lambda: DoPost | |
4256 (_REMOTE, '/studies/%s/archive' % kneeT1, { | |
4257 'Synchronous' : False | |
4258 })) | |
4259 | |
4260 z = GetArchive(_REMOTE, '/jobs/%s/archive' % job) | |
4261 self.assertEqual(1, len(z.namelist())) | |
4262 self.assertFalse('DICOMDIR' in z.namelist()) | |
4263 | |
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4264 info = DoGet(_REMOTE, '/jobs/%s' % job) |
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4265 self.assertEqual(0, info['Content']['ArchiveSizeMB']) # New in Orthanc 1.8.1 |
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4266 self.assertEqual(1, info['Content']['InstancesCount']) |
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4267 self.assertEqual(0, info['Content']['UncompressedSizeMB']) |
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4268 |
187 | 4269 job2 = MonitorJob2(_REMOTE, lambda: DoPost |
4270 (_REMOTE, '/studies/%s/media' % kneeT1, { | |
4271 'Synchronous' : False | |
4272 })) | |
4273 | |
4274 # The archive from the first job has been replaced by the | |
4275 # archive from second job (as MediaArchiveSize == 1) | |
4276 self.assertRaises(Exception, lambda: GetArchive(_REMOTE, '/jobs/%s/archive' % job)) | |
4277 | |
4278 z = GetArchive(_REMOTE, '/jobs/%s/archive' % job2) | |
4279 self.assertEqual(2, len(z.namelist())) | |
4280 self.assertTrue('DICOMDIR' in z.namelist()) | |
4281 | |
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4282 info = DoGet(_REMOTE, '/jobs/%s' % job2) |
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4283 self.assertEqual(0, info['Content']['ArchiveSizeMB']) # New in Orthanc 1.8.1 |
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4284 self.assertEqual(1, info['Content']['InstancesCount']) |
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4285 self.assertEqual(0, info['Content']['UncompressedSizeMB']) |
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4286 |
187 | 4287 job = MonitorJob2(_REMOTE, lambda: DoPost |
4288 (_REMOTE, '/tools/create-archive', { | |
4289 'Synchronous' : False, | |
4290 'Resources' : [ kneeT1, kneeT2 ], | |
4291 })) | |
4292 | |
4293 z = GetArchive(_REMOTE, '/jobs/%s/archive' % job) | |
4294 self.assertEqual(2, len(z.namelist())) | |
4295 self.assertFalse('DICOMDIR' in z.namelist()) | |
4296 | |
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4297 info = DoGet(_REMOTE, '/jobs/%s' % job) |
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4298 self.assertEqual(0, info['Content']['ArchiveSizeMB']) # New in Orthanc 1.8.1 |
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4299 self.assertEqual(2, info['Content']['InstancesCount']) |
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4300 self.assertEqual(0, info['Content']['UncompressedSizeMB']) |
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4301 |
187 | 4302 job = MonitorJob2(_REMOTE, lambda: DoPost |
4303 (_REMOTE, '/tools/create-media', { | |
4304 'Synchronous' : False, | |
4305 'Resources' : [ kneeT1, kneeT2 ], | |
4306 })) | |
4307 | |
4308 z = GetArchive(_REMOTE, '/jobs/%s/archive' % job) | |
4309 self.assertEqual(3, len(z.namelist())) | |
4310 self.assertTrue('DICOMDIR' in z.namelist()) | |
188
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4311 |
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4312 self.assertEqual(0, info['Content']['ArchiveSizeMB']) # New in Orthanc 1.8.1 |
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4313 self.assertEqual(2, info['Content']['InstancesCount']) |
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4314 self.assertEqual(0, info['Content']['UncompressedSizeMB']) |
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4315 |
187 | 4316 |
188
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4317 def test_queries_hierarchy(self): |
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4318 UploadInstance(_REMOTE, 'Knee/T1/IM-0001-0001.dcm') |
189
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4319 UploadInstance(_REMOTE, 'Brainix/Flair/IM-0001-0001.dcm') |
188
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4320 |
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4321 tags = { |
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diff
changeset
|
4322 'NumberOfPatientRelatedInstances' : '', |
7d585263808b
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diff
changeset
|
4323 'NumberOfPatientRelatedSeries' : '', |
7d585263808b
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diff
changeset
|
4324 'NumberOfPatientRelatedStudies' : '', |
7d585263808b
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diff
changeset
|
4325 'NumberOfStudyRelatedInstances' : '', |
7d585263808b
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diff
changeset
|
4326 'NumberOfStudyRelatedSeries' : '', |
7d585263808b
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diff
changeset
|
4327 'NumberOfSeriesRelatedInstances' : '', |
7d585263808b
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187
diff
changeset
|
4328 } |
7d585263808b
new test: test_queries_hierarchy
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diff
changeset
|
4329 |
189
11719f19bd62
test_dicom_disk_size
Sebastien Jodogne <s.jodogne@gmail.com>
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188
diff
changeset
|
4330 tags2 = copy.copy(tags) |
11719f19bd62
test_dicom_disk_size
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diff
changeset
|
4331 tags2['PatientID'] = '887' # Only consider the "Knee" patient |
11719f19bd62
test_dicom_disk_size
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diff
changeset
|
4332 |
188
7d585263808b
new test: test_queries_hierarchy
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diff
changeset
|
4333 patient = DoPost(_REMOTE, '/modalities/self/query', { |
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diff
changeset
|
4334 'Level' : 'Patient', |
189
11719f19bd62
test_dicom_disk_size
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188
diff
changeset
|
4335 'Query' : tags2 |
188
7d585263808b
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diff
changeset
|
4336 }) ['ID'] |
7d585263808b
new test: test_queries_hierarchy
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diff
changeset
|
4337 |
7d585263808b
new test: test_queries_hierarchy
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diff
changeset
|
4338 study = DoPost(_REMOTE, '/modalities/self/query', { |
7d585263808b
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diff
changeset
|
4339 'Level' : 'Study', |
189
11719f19bd62
test_dicom_disk_size
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
188
diff
changeset
|
4340 'Query' : tags2 |
188
7d585263808b
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diff
changeset
|
4341 }) ['ID'] |
7d585263808b
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diff
changeset
|
4342 |
7d585263808b
new test: test_queries_hierarchy
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diff
changeset
|
4343 series = DoPost(_REMOTE, '/modalities/self/query', { |
7d585263808b
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diff
changeset
|
4344 'Level' : 'Series', |
189
11719f19bd62
test_dicom_disk_size
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
188
diff
changeset
|
4345 'Query' : tags2 |
188
7d585263808b
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diff
changeset
|
4346 }) ['ID'] |
7d585263808b
new test: test_queries_hierarchy
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diff
changeset
|
4347 |
7d585263808b
new test: test_queries_hierarchy
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diff
changeset
|
4348 instance = DoPost(_REMOTE, '/modalities/self/query', { |
7d585263808b
new test: test_queries_hierarchy
Sebastien Jodogne <s.jodogne@gmail.com>
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diff
changeset
|
4349 'Level' : 'Instance', |
189
11719f19bd62
test_dicom_disk_size
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
188
diff
changeset
|
4350 'Query' : tags2 |
188
7d585263808b
new test: test_queries_hierarchy
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diff
changeset
|
4351 }) ['ID'] |
7d585263808b
new test: test_queries_hierarchy
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diff
changeset
|
4352 |
7d585263808b
new test: test_queries_hierarchy
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187
diff
changeset
|
4353 p = DoGet(_REMOTE, '/queries/%s/answers?expand&simplify' % patient) |
7d585263808b
new test: test_queries_hierarchy
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diff
changeset
|
4354 self.assertEqual(1, len(p)) |
7d585263808b
new test: test_queries_hierarchy
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diff
changeset
|
4355 self.assertEqual('887', p[0]['PatientID']) |
7d585263808b
new test: test_queries_hierarchy
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diff
changeset
|
4356 self.assertEqual('1', p[0]['NumberOfPatientRelatedInstances']) |
7d585263808b
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Sebastien Jodogne <s.jodogne@gmail.com>
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diff
changeset
|
4357 self.assertEqual('1', p[0]['NumberOfPatientRelatedSeries']) |
7d585263808b
new test: test_queries_hierarchy
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diff
changeset
|
4358 self.assertEqual('1', p[0]['NumberOfPatientRelatedStudies']) |
7d585263808b
new test: test_queries_hierarchy
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diff
changeset
|
4359 self.assertFalse('NumberOfStudyRelatedInstances' in p[0]) |
7d585263808b
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diff
changeset
|
4360 self.assertFalse('NumberOfStudyRelatedSeries' in p[0]) |
7d585263808b
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diff
changeset
|
4361 self.assertFalse('NumberOfSeriesRelatedInstances' in p[0]) |
7d585263808b
new test: test_queries_hierarchy
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diff
changeset
|
4362 |
7d585263808b
new test: test_queries_hierarchy
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diff
changeset
|
4363 p = DoGet(_REMOTE, '/queries/%s/answers?expand&simplify' % study) |
7d585263808b
new test: test_queries_hierarchy
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diff
changeset
|
4364 self.assertEqual(1, len(p)) |
7d585263808b
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diff
changeset
|
4365 self.assertEqual('2.16.840.1.113669.632.20.121711.10000160881', p[0]['StudyInstanceUID']) |
7d585263808b
new test: test_queries_hierarchy
Sebastien Jodogne <s.jodogne@gmail.com>
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diff
changeset
|
4366 self.assertEqual('1', p[0]['NumberOfStudyRelatedInstances']) |
7d585263808b
new test: test_queries_hierarchy
Sebastien Jodogne <s.jodogne@gmail.com>
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diff
changeset
|
4367 self.assertEqual('1', p[0]['NumberOfStudyRelatedSeries']) |
7d585263808b
new test: test_queries_hierarchy
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
187
diff
changeset
|
4368 self.assertFalse('NumberOfPatientRelatedInstances' in p[0]) |
7d585263808b
new test: test_queries_hierarchy
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
187
diff
changeset
|
4369 self.assertFalse('NumberOfPatientRelatedSeries' in p[0]) |
7d585263808b
new test: test_queries_hierarchy
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
187
diff
changeset
|
4370 self.assertFalse('NumberOfPatientRelatedInstances' in p[0]) |
7d585263808b
new test: test_queries_hierarchy
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
187
diff
changeset
|
4371 self.assertFalse('NumberOfSeriesRelatedInstances' in p[0]) |
7d585263808b
new test: test_queries_hierarchy
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
187
diff
changeset
|
4372 |
7d585263808b
new test: test_queries_hierarchy
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
187
diff
changeset
|
4373 p = DoGet(_REMOTE, '/queries/%s/answers?expand&simplify' % series) |
7d585263808b
new test: test_queries_hierarchy
Sebastien Jodogne <s.jodogne@gmail.com>
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187
diff
changeset
|
4374 self.assertEqual(1, len(p)) |
7d585263808b
new test: test_queries_hierarchy
Sebastien Jodogne <s.jodogne@gmail.com>
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diff
changeset
|
4375 self.assertEqual('1.3.46.670589.11.17521.5.0.3124.2008081908564160709', p[0]['SeriesInstanceUID']) |
7d585263808b
new test: test_queries_hierarchy
Sebastien Jodogne <s.jodogne@gmail.com>
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187
diff
changeset
|
4376 self.assertEqual('1', p[0]['NumberOfSeriesRelatedInstances']) |
7d585263808b
new test: test_queries_hierarchy
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
187
diff
changeset
|
4377 self.assertFalse('NumberOfPatientRelatedInstances' in p[0]) |
7d585263808b
new test: test_queries_hierarchy
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
187
diff
changeset
|
4378 self.assertFalse('NumberOfPatientRelatedSeries' in p[0]) |
7d585263808b
new test: test_queries_hierarchy
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
187
diff
changeset
|
4379 self.assertFalse('NumberOfPatientRelatedInstances' in p[0]) |
7d585263808b
new test: test_queries_hierarchy
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
187
diff
changeset
|
4380 self.assertFalse('NumberOfStudyRelatedInstances' in p[0]) |
7d585263808b
new test: test_queries_hierarchy
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
187
diff
changeset
|
4381 self.assertFalse('NumberOfStudyRelatedSeries' in p[0]) |
7d585263808b
new test: test_queries_hierarchy
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
187
diff
changeset
|
4382 |
7d585263808b
new test: test_queries_hierarchy
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
187
diff
changeset
|
4383 p = DoGet(_REMOTE, '/queries/%s/answers?expand&simplify' % instance) |
7d585263808b
new test: test_queries_hierarchy
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
187
diff
changeset
|
4384 self.assertEqual(1, len(p)) |
7d585263808b
new test: test_queries_hierarchy
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
187
diff
changeset
|
4385 self.assertEqual('1.3.46.670589.11.17521.5.0.3124.2008081908590448738', p[0]['SOPInstanceUID']) |
7d585263808b
new test: test_queries_hierarchy
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
187
diff
changeset
|
4386 |
7d585263808b
new test: test_queries_hierarchy
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
187
diff
changeset
|
4387 j = DoPost(_REMOTE, '/queries/%s/answers/0/query-studies' % patient, |
7d585263808b
new test: test_queries_hierarchy
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
187
diff
changeset
|
4388 { 'Query' : tags }) ['ID'] |
7d585263808b
new test: test_queries_hierarchy
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
187
diff
changeset
|
4389 self.assertEqual(DoGet(_REMOTE, '/queries/%s/answers?expand&simplify' % j), |
7d585263808b
new test: test_queries_hierarchy
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
187
diff
changeset
|
4390 DoGet(_REMOTE, '/queries/%s/answers?expand&simplify' % study)) |
189
11719f19bd62
test_dicom_disk_size
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
188
diff
changeset
|
4391 |
188
7d585263808b
new test: test_queries_hierarchy
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
187
diff
changeset
|
4392 j = DoPost(_REMOTE, '/queries/%s/answers/0/query-series' % patient, |
7d585263808b
new test: test_queries_hierarchy
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
187
diff
changeset
|
4393 { 'Query' : tags }) ['ID'] |
7d585263808b
new test: test_queries_hierarchy
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
187
diff
changeset
|
4394 self.assertEqual(DoGet(_REMOTE, '/queries/%s/answers?expand&simplify' % j), |
7d585263808b
new test: test_queries_hierarchy
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
187
diff
changeset
|
4395 DoGet(_REMOTE, '/queries/%s/answers?expand&simplify' % series)) |
7d585263808b
new test: test_queries_hierarchy
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
187
diff
changeset
|
4396 |
7d585263808b
new test: test_queries_hierarchy
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
187
diff
changeset
|
4397 j = DoPost(_REMOTE, '/queries/%s/answers/0/query-instances' % patient, |
7d585263808b
new test: test_queries_hierarchy
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
changeset
|
4398 { 'Query' : tags }) ['ID'] |
7d585263808b
new test: test_queries_hierarchy
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
187
diff
changeset
|
4399 self.assertEqual(DoGet(_REMOTE, '/queries/%s/answers?expand&simplify' % j), |
7d585263808b
new test: test_queries_hierarchy
Sebastien Jodogne <s.jodogne@gmail.com>
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diff
changeset
|
4400 DoGet(_REMOTE, '/queries/%s/answers?expand&simplify' % instance)) |
7d585263808b
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Sebastien Jodogne <s.jodogne@gmail.com>
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diff
changeset
|
4401 |
7d585263808b
new test: test_queries_hierarchy
Sebastien Jodogne <s.jodogne@gmail.com>
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187
diff
changeset
|
4402 j = DoPost(_REMOTE, '/queries/%s/answers/0/query-series' % study, |
7d585263808b
new test: test_queries_hierarchy
Sebastien Jodogne <s.jodogne@gmail.com>
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diff
changeset
|
4403 { 'Query' : tags }) ['ID'] |
7d585263808b
new test: test_queries_hierarchy
Sebastien Jodogne <s.jodogne@gmail.com>
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187
diff
changeset
|
4404 self.assertEqual(DoGet(_REMOTE, '/queries/%s/answers?expand&simplify' % j), |
7d585263808b
new test: test_queries_hierarchy
Sebastien Jodogne <s.jodogne@gmail.com>
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diff
changeset
|
4405 DoGet(_REMOTE, '/queries/%s/answers?expand&simplify' % series)) |
7d585263808b
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Sebastien Jodogne <s.jodogne@gmail.com>
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diff
changeset
|
4406 |
7d585263808b
new test: test_queries_hierarchy
Sebastien Jodogne <s.jodogne@gmail.com>
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diff
changeset
|
4407 j = DoPost(_REMOTE, '/queries/%s/answers/0/query-instances' % study, |
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Sebastien Jodogne <s.jodogne@gmail.com>
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diff
changeset
|
4408 { 'Query' : tags }) ['ID'] |
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Sebastien Jodogne <s.jodogne@gmail.com>
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187
diff
changeset
|
4409 self.assertEqual(DoGet(_REMOTE, '/queries/%s/answers?expand&simplify' % j), |
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diff
changeset
|
4410 DoGet(_REMOTE, '/queries/%s/answers?expand&simplify' % instance)) |
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Sebastien Jodogne <s.jodogne@gmail.com>
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diff
changeset
|
4411 |
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new test: test_queries_hierarchy
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diff
changeset
|
4412 j = DoPost(_REMOTE, '/queries/%s/answers/0/query-instances' % series, |
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Sebastien Jodogne <s.jodogne@gmail.com>
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diff
changeset
|
4413 { 'Query' : tags }) ['ID'] |
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diff
changeset
|
4414 self.assertEqual(DoGet(_REMOTE, '/queries/%s/answers?expand&simplify' % j), |
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Sebastien Jodogne <s.jodogne@gmail.com>
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diff
changeset
|
4415 DoGet(_REMOTE, '/queries/%s/answers?expand&simplify' % instance)) |
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diff
changeset
|
4416 |
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diff
changeset
|
4417 |
189
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test_dicom_disk_size
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diff
changeset
|
4418 def test_dicom_disk_size(self): |
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|
4419 dicomSize = 0 |
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test_dicom_disk_size
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diff
changeset
|
4420 |
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test_dicom_disk_size
Sebastien Jodogne <s.jodogne@gmail.com>
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diff
changeset
|
4421 UploadInstance(_REMOTE, 'Brainix/Flair/IM-0001-0001.dcm') |
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test_dicom_disk_size
Sebastien Jodogne <s.jodogne@gmail.com>
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diff
changeset
|
4422 |
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test_dicom_disk_size
Sebastien Jodogne <s.jodogne@gmail.com>
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diff
changeset
|
4423 for i in range(2): |
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test_dicom_disk_size
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diff
changeset
|
4424 p = 'Knee/T%d/IM-0001-0001.dcm' % (i + 1) |
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test_dicom_disk_size
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diff
changeset
|
4425 UploadInstance(_REMOTE, p) |
11719f19bd62
test_dicom_disk_size
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
188
diff
changeset
|
4426 dicomSize += os.path.getsize(GetDatabasePath(p)) |
11719f19bd62
test_dicom_disk_size
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
188
diff
changeset
|
4427 |
11719f19bd62
test_dicom_disk_size
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
188
diff
changeset
|
4428 s = DoGet(_REMOTE, '/patients/ca29faea-b6a0e17f-067743a1-8b778011-a48b2a17/statistics') # Consider Knee patient |
11719f19bd62
test_dicom_disk_size
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
188
diff
changeset
|
4429 self.assertEqual(2, s['CountInstances']) |
11719f19bd62
test_dicom_disk_size
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
188
diff
changeset
|
4430 self.assertEqual(2, s['CountSeries']) |
11719f19bd62
test_dicom_disk_size
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
188
diff
changeset
|
4431 self.assertEqual(1, s['CountStudies']) |
11719f19bd62
test_dicom_disk_size
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
188
diff
changeset
|
4432 self.assertEqual(dicomSize, int(s['DicomDiskSize'])) |
11719f19bd62
test_dicom_disk_size
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
188
diff
changeset
|
4433 self.assertEqual(dicomSize, int(s['DicomUncompressedSize'])) |
11719f19bd62
test_dicom_disk_size
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
188
diff
changeset
|
4434 self.assertLess(dicomSize, int(s['UncompressedSize'])) |
11719f19bd62
test_dicom_disk_size
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
188
diff
changeset
|
4435 self.assertEqual(s['UncompressedSize'], s['DiskSize']) |
11719f19bd62
test_dicom_disk_size
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
188
diff
changeset
|
4436 |
202
f26f9ae9c599
test_changes_2 and test_bitbucket_issue_124
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
195
diff
changeset
|
4437 |
f26f9ae9c599
test_changes_2 and test_bitbucket_issue_124
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
195
diff
changeset
|
4438 def test_changes_2(self): |
f26f9ae9c599
test_changes_2 and test_bitbucket_issue_124
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
195
diff
changeset
|
4439 # More consistent behavior since Orthanc 1.5.2 |
f26f9ae9c599
test_changes_2 and test_bitbucket_issue_124
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
195
diff
changeset
|
4440 # https://groups.google.com/d/msg/orthanc-users/QhzB6vxYeZ0/YxabgqpfBAAJ |
f26f9ae9c599
test_changes_2 and test_bitbucket_issue_124
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
195
diff
changeset
|
4441 |
f26f9ae9c599
test_changes_2 and test_bitbucket_issue_124
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
195
diff
changeset
|
4442 # Make sure that this is not the first change |
f26f9ae9c599
test_changes_2 and test_bitbucket_issue_124
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
195
diff
changeset
|
4443 self.assertEqual(0, len(DoGet(_REMOTE, '/instances'))) |
f26f9ae9c599
test_changes_2 and test_bitbucket_issue_124
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
195
diff
changeset
|
4444 a = UploadInstance(_REMOTE, 'DummyCT.dcm')['ID'] |
f26f9ae9c599
test_changes_2 and test_bitbucket_issue_124
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
195
diff
changeset
|
4445 self.assertEqual(1, len(DoGet(_REMOTE, '/instances'))) |
f26f9ae9c599
test_changes_2 and test_bitbucket_issue_124
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
195
diff
changeset
|
4446 DoDelete(_REMOTE, '/instances/%s' % a) |
f26f9ae9c599
test_changes_2 and test_bitbucket_issue_124
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
195
diff
changeset
|
4447 |
f26f9ae9c599
test_changes_2 and test_bitbucket_issue_124
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
195
diff
changeset
|
4448 # No more instance, but there were previous changes |
f26f9ae9c599
test_changes_2 and test_bitbucket_issue_124
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
195
diff
changeset
|
4449 self.assertEqual(0, len(DoGet(_REMOTE, '/instances'))) |
f26f9ae9c599
test_changes_2 and test_bitbucket_issue_124
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
195
diff
changeset
|
4450 |
f26f9ae9c599
test_changes_2 and test_bitbucket_issue_124
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
195
diff
changeset
|
4451 c = DoGet(_REMOTE, '/changes') |
f26f9ae9c599
test_changes_2 and test_bitbucket_issue_124
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
195
diff
changeset
|
4452 self.assertEqual(0, len(c['Changes'])) |
f26f9ae9c599
test_changes_2 and test_bitbucket_issue_124
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
195
diff
changeset
|
4453 self.assertTrue(c['Done']) |
f26f9ae9c599
test_changes_2 and test_bitbucket_issue_124
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
195
diff
changeset
|
4454 seq = c['Last'] |
f26f9ae9c599
test_changes_2 and test_bitbucket_issue_124
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
195
diff
changeset
|
4455 |
f26f9ae9c599
test_changes_2 and test_bitbucket_issue_124
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
195
diff
changeset
|
4456 c = DoGet(_REMOTE, '/changes?last') |
f26f9ae9c599
test_changes_2 and test_bitbucket_issue_124
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
195
diff
changeset
|
4457 self.assertEqual(0, len(c['Changes'])) |
f26f9ae9c599
test_changes_2 and test_bitbucket_issue_124
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
195
diff
changeset
|
4458 self.assertTrue(c['Done']) |
f26f9ae9c599
test_changes_2 and test_bitbucket_issue_124
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
195
diff
changeset
|
4459 self.assertEqual(seq, c['Last']) |
f26f9ae9c599
test_changes_2 and test_bitbucket_issue_124
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
195
diff
changeset
|
4460 |
f26f9ae9c599
test_changes_2 and test_bitbucket_issue_124
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
195
diff
changeset
|
4461 c = DoGet(_REMOTE, '/changes?since=%d' % (seq + 1000)) |
f26f9ae9c599
test_changes_2 and test_bitbucket_issue_124
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
195
diff
changeset
|
4462 self.assertEqual(0, len(c['Changes'])) |
f26f9ae9c599
test_changes_2 and test_bitbucket_issue_124
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
195
diff
changeset
|
4463 self.assertTrue(c['Done']) |
f26f9ae9c599
test_changes_2 and test_bitbucket_issue_124
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
195
diff
changeset
|
4464 self.assertEqual(seq, c['Last']) |
f26f9ae9c599
test_changes_2 and test_bitbucket_issue_124
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
195
diff
changeset
|
4465 |
f26f9ae9c599
test_changes_2 and test_bitbucket_issue_124
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
195
diff
changeset
|
4466 # Add one instance |
f26f9ae9c599
test_changes_2 and test_bitbucket_issue_124
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
195
diff
changeset
|
4467 UploadInstance(_REMOTE, 'DummyCT.dcm') |
f26f9ae9c599
test_changes_2 and test_bitbucket_issue_124
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
195
diff
changeset
|
4468 self.assertEqual(1, len(DoGet(_REMOTE, '/instances'))) |
f26f9ae9c599
test_changes_2 and test_bitbucket_issue_124
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
195
diff
changeset
|
4469 |
f26f9ae9c599
test_changes_2 and test_bitbucket_issue_124
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
195
diff
changeset
|
4470 c = DoGet(_REMOTE, '/changes') |
f26f9ae9c599
test_changes_2 and test_bitbucket_issue_124
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
195
diff
changeset
|
4471 self.assertEqual(4, len(c['Changes'])) |
f26f9ae9c599
test_changes_2 and test_bitbucket_issue_124
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
195
diff
changeset
|
4472 self.assertTrue(c['Done']) |
f26f9ae9c599
test_changes_2 and test_bitbucket_issue_124
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
195
diff
changeset
|
4473 self.assertEqual(seq + 4, c['Last']) |
f26f9ae9c599
test_changes_2 and test_bitbucket_issue_124
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
195
diff
changeset
|
4474 |
f26f9ae9c599
test_changes_2 and test_bitbucket_issue_124
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
195
diff
changeset
|
4475 c = DoGet(_REMOTE, '/changes?last') |
f26f9ae9c599
test_changes_2 and test_bitbucket_issue_124
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
195
diff
changeset
|
4476 self.assertEqual(1, len(c['Changes'])) |
f26f9ae9c599
test_changes_2 and test_bitbucket_issue_124
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
195
diff
changeset
|
4477 self.assertTrue(c['Done']) |
f26f9ae9c599
test_changes_2 and test_bitbucket_issue_124
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
195
diff
changeset
|
4478 self.assertEqual(seq + 4, c['Last']) |
f26f9ae9c599
test_changes_2 and test_bitbucket_issue_124
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
195
diff
changeset
|
4479 |
f26f9ae9c599
test_changes_2 and test_bitbucket_issue_124
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
195
diff
changeset
|
4480 c = DoGet(_REMOTE, '/changes?since=%d' % (seq + 1000)) |
f26f9ae9c599
test_changes_2 and test_bitbucket_issue_124
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
195
diff
changeset
|
4481 self.assertEqual(0, len(c['Changes'])) |
f26f9ae9c599
test_changes_2 and test_bitbucket_issue_124
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
195
diff
changeset
|
4482 self.assertTrue(c['Done']) |
f26f9ae9c599
test_changes_2 and test_bitbucket_issue_124
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
195
diff
changeset
|
4483 self.assertEqual(seq + 4, c['Last']) |
f26f9ae9c599
test_changes_2 and test_bitbucket_issue_124
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
195
diff
changeset
|
4484 |
f26f9ae9c599
test_changes_2 and test_bitbucket_issue_124
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
195
diff
changeset
|
4485 # Remove the uploaded instance |
f26f9ae9c599
test_changes_2 and test_bitbucket_issue_124
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
195
diff
changeset
|
4486 DoDelete(_REMOTE, '/instances/%s' % a) |
f26f9ae9c599
test_changes_2 and test_bitbucket_issue_124
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
195
diff
changeset
|
4487 self.assertEqual(0, len(DoGet(_REMOTE, '/instances'))) |
f26f9ae9c599
test_changes_2 and test_bitbucket_issue_124
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
195
diff
changeset
|
4488 |
f26f9ae9c599
test_changes_2 and test_bitbucket_issue_124
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
195
diff
changeset
|
4489 c = DoGet(_REMOTE, '/changes') |
f26f9ae9c599
test_changes_2 and test_bitbucket_issue_124
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
195
diff
changeset
|
4490 self.assertEqual(0, len(c['Changes'])) |
f26f9ae9c599
test_changes_2 and test_bitbucket_issue_124
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
195
diff
changeset
|
4491 self.assertTrue(c['Done']) |
f26f9ae9c599
test_changes_2 and test_bitbucket_issue_124
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
195
diff
changeset
|
4492 self.assertEqual(seq + 4, c['Last']) |
f26f9ae9c599
test_changes_2 and test_bitbucket_issue_124
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
195
diff
changeset
|
4493 |
f26f9ae9c599
test_changes_2 and test_bitbucket_issue_124
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
195
diff
changeset
|
4494 c = DoGet(_REMOTE, '/changes?last') |
f26f9ae9c599
test_changes_2 and test_bitbucket_issue_124
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
195
diff
changeset
|
4495 self.assertEqual(0, len(c['Changes'])) |
f26f9ae9c599
test_changes_2 and test_bitbucket_issue_124
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
195
diff
changeset
|
4496 self.assertTrue(c['Done']) |
f26f9ae9c599
test_changes_2 and test_bitbucket_issue_124
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
195
diff
changeset
|
4497 self.assertEqual(seq + 4, c['Last']) |
f26f9ae9c599
test_changes_2 and test_bitbucket_issue_124
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
195
diff
changeset
|
4498 |
f26f9ae9c599
test_changes_2 and test_bitbucket_issue_124
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
195
diff
changeset
|
4499 c = DoGet(_REMOTE, '/changes?since=%d' % (seq + 1000)) |
f26f9ae9c599
test_changes_2 and test_bitbucket_issue_124
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
195
diff
changeset
|
4500 self.assertEqual(0, len(c['Changes'])) |
f26f9ae9c599
test_changes_2 and test_bitbucket_issue_124
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
195
diff
changeset
|
4501 self.assertTrue(c['Done']) |
f26f9ae9c599
test_changes_2 and test_bitbucket_issue_124
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
195
diff
changeset
|
4502 self.assertEqual(seq + 4, c['Last']) |
f26f9ae9c599
test_changes_2 and test_bitbucket_issue_124
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
195
diff
changeset
|
4503 |
f26f9ae9c599
test_changes_2 and test_bitbucket_issue_124
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
195
diff
changeset
|
4504 |
f26f9ae9c599
test_changes_2 and test_bitbucket_issue_124
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
195
diff
changeset
|
4505 def test_bitbucket_issue_124(self): |
f26f9ae9c599
test_changes_2 and test_bitbucket_issue_124
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
195
diff
changeset
|
4506 a = UploadInstance(_REMOTE, 'Issue124.dcm')['ID'] |
f26f9ae9c599
test_changes_2 and test_bitbucket_issue_124
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
195
diff
changeset
|
4507 |
f26f9ae9c599
test_changes_2 and test_bitbucket_issue_124
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
195
diff
changeset
|
4508 z = GetArchive(_REMOTE, '/patients/%s/media' % a) |
f26f9ae9c599
test_changes_2 and test_bitbucket_issue_124
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
195
diff
changeset
|
4509 self.assertEqual(2, len(z.namelist())) |
207
a515eec74078
test_invalid_findscp
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
202
diff
changeset
|
4510 |
a515eec74078
test_invalid_findscp
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
202
diff
changeset
|
4511 |
a515eec74078
test_invalid_findscp
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
202
diff
changeset
|
4512 def test_invalid_findscp(self): |
a515eec74078
test_invalid_findscp
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
202
diff
changeset
|
4513 UploadInstance(_REMOTE, 'DummyCT.dcm') |
a515eec74078
test_invalid_findscp
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
202
diff
changeset
|
4514 findscu = CallFindScu([ '-S', '-k', '8,52=IMAGE', '-k', '8,16', '-k', '2,2' ]) |
a515eec74078
test_invalid_findscp
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
202
diff
changeset
|
4515 self.assertEqual(0, len(re.findall('\(0002,0002\)', findscu))) |
208
2444c9a7c422
test_bitbucket_issue_90
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
207
diff
changeset
|
4516 |
2444c9a7c422
test_bitbucket_issue_90
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
207
diff
changeset
|
4517 |
2444c9a7c422
test_bitbucket_issue_90
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
207
diff
changeset
|
4518 def test_bitbucket_issue_90(self): |
2444c9a7c422
test_bitbucket_issue_90
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
207
diff
changeset
|
4519 def CountDicomResults(sex): |
2444c9a7c422
test_bitbucket_issue_90
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
207
diff
changeset
|
4520 a = CallFindScu([ '-S', '-k', '8,52=STUDY', '-k', sex ]) |
2444c9a7c422
test_bitbucket_issue_90
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
207
diff
changeset
|
4521 return len(re.findall('\(0010,0040\)', a)) |
2444c9a7c422
test_bitbucket_issue_90
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
207
diff
changeset
|
4522 |
2444c9a7c422
test_bitbucket_issue_90
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
207
diff
changeset
|
4523 def CountRestResults(sex): |
2444c9a7c422
test_bitbucket_issue_90
Sebastien Jodogne <s.jodogne@gmail.com>
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207
diff
changeset
|
4524 a = DoPost(_REMOTE, '/tools/find', |
2444c9a7c422
test_bitbucket_issue_90
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
207
diff
changeset
|
4525 { 'Level' : 'Study', 'Query' : { 'PatientSex' : sex } }) |
2444c9a7c422
test_bitbucket_issue_90
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
207
diff
changeset
|
4526 return len(a) |
2444c9a7c422
test_bitbucket_issue_90
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
207
diff
changeset
|
4527 |
2444c9a7c422
test_bitbucket_issue_90
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
207
diff
changeset
|
4528 # Just like the "CR000000.dcm" of the issue, the test image |
2444c9a7c422
test_bitbucket_issue_90
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4529 # "DummyCT.dcm" has the tag PatientSex (0010,0040) unset |
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4530 UploadInstance(_REMOTE, 'DummyCT.dcm') |
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4531 |
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4532 # Test that the behavior of DICOM vs. REST API is consistent on missing tags |
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4533 |
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4534 # In wildcard constraints, the patient sex must be set for a match to occur |
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4535 self.assertEqual(0, CountDicomResults('PatientSex=*')) |
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4536 self.assertEqual(0, CountRestResults('*')) |
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4537 |
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4538 # In single-valued constraints, the patient sex must be set |
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4539 self.assertEqual(0, CountDicomResults('PatientSex=F')) |
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4540 self.assertEqual(0, CountDicomResults('PatientSex=M')) |
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4541 self.assertEqual(0, CountRestResults('F')) |
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4542 self.assertEqual(0, CountRestResults('M')) |
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4543 |
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4544 # Empty constraints are only used to ask the actual value of |
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4545 # the tag to be added to the *answer*. The tag should not used |
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4546 # as a filter in such a situation. |
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4547 self.assertEqual(1, CountDicomResults('PatientSex')) |
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4548 self.assertEqual(1, CountDicomResults('PatientSex=')) |
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4549 self.assertEqual(1, CountRestResults('')) # This check fails on Orthanc <= 1.5.2 (issue 90) |
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4550 |
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4551 |
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4552 def test_rest_modalities_in_study(self): |
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4553 # Tests a regression that is present in Orthanc 1.5.2 and 1.5.3 |
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4554 # https://groups.google.com/d/msg/orthanc-users/7lZyG3wpx-M/uOXzAzVCFwAJ |
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4555 UploadInstance(_REMOTE, 'ColorTestImageJ.dcm') |
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4556 |
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4557 a = DoPost(_REMOTE, '/tools/find', { 'Level' : 'Study', |
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4558 'Query' : { 'ModalitiesInStudy' : 'US' }}) |
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4559 self.assertEqual(0, len(a)) |
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4560 |
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4561 a = DoPost(_REMOTE, '/tools/find', { 'Level' : 'Study', |
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4562 'Query' : { 'ModalitiesInStudy' : 'US\\CT' }}) |
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4563 self.assertEqual(1, len(a)) |
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4564 |
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4565 a = DoPost(_REMOTE, '/tools/find', { 'Level' : 'Study', |
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4566 'Query' : { 'ModalitiesInStudy' : 'CT' }}) |
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4567 self.assertEqual(1, len(a)) |
211 | 4568 |
4569 | |
4570 def test_series_status(self): | |
4571 def HasCompletedInChanges(): | |
4572 for c in DoGet(_REMOTE, '/changes?limit=1000&since=0')['Changes']: | |
4573 if c['ChangeType'] == 'CompletedSeries': | |
4574 return True; | |
4575 | |
4576 return False | |
4577 | |
4578 UploadInstance(_REMOTE, 'Knix/Loc/IM-0001-0001.dcm') | |
4579 series = '8ea120d7-5057d919-837dfbcc-ccd04e0f-7f3a94aa' | |
4580 self.assertEqual('Unknown', DoGet(_REMOTE, '/series/%s' % series)['Status']) | |
4581 self.assertFalse(HasCompletedInChanges()) | |
4582 | |
4583 series = 'ce25ecb6-ed79d004-5ae43ca7-3fc89bc5-67511614' | |
4584 | |
4585 for i in range(3): | |
4586 UploadInstance(_REMOTE, 'Series/Lena-%d.dcm' % (i + 1)) | |
4587 self.assertEqual('Missing', DoGet(_REMOTE, '/series/%s' % series)['Status']) | |
4588 self.assertFalse(HasCompletedInChanges()) | |
4589 | |
4590 UploadInstance(_REMOTE, 'Series/Lena-4.dcm') | |
4591 self.assertEqual('Complete', DoGet(_REMOTE, '/series/%s' % series)['Status']) | |
4592 self.assertTrue(HasCompletedInChanges()) | |
4593 | |
4594 DoDelete(_REMOTE, '/changes') | |
4595 self.assertFalse(HasCompletedInChanges()) | |
4596 | |
4597 UploadInstance(_REMOTE, 'Series/Lena-5.dcm') | |
4598 self.assertEqual('Inconsistent', DoGet(_REMOTE, '/series/%s' % series)['Status']) | |
4599 self.assertFalse(HasCompletedInChanges()) | |
4600 | |
215 | 4601 |
4602 def test_dicomweb(self): | |
4603 def Compare(dicom, reference): | |
4604 a = UploadInstance(_REMOTE, dicom) ['ID'] | |
4605 b = DoGet(_REMOTE, '/instances/%s/file' % a, | |
4606 headers = { 'Accept' : 'application/dicom+json' }) | |
4607 with open(GetDatabasePath(reference), 'rb') as c: | |
4608 d = json.load(c) | |
220 | 4609 AssertAlmostEqualRecursive(self, d, b) |
215 | 4610 |
4611 Compare('DummyCT.dcm', 'DummyCT.json') | |
4612 Compare('MarekLatin2.dcm', 'MarekLatin2.json') | |
4613 Compare('HierarchicalAnonymization/StructuredReports/IM0', | |
4614 'HierarchicalAnonymization/StructuredReports/IM0.json') | |
217 | 4615 |
4616 | |
4617 def test_issue_95_encodings(self): | |
319 | 4618 # https://bugs.orthanc-server.com/show_bug.cgi?id=95 |
217 | 4619 # Check out image: "../Database/Encodings/DavidClunie/charsettests.screenshot.png" |
4620 | |
4621 # Very useful tool: "file2" from package "file-kanji" | |
4622 | |
4623 def GetPatientName(dicom): | |
4624 i = UploadInstance(_REMOTE, dicom) ['ID'] | |
4625 j = DoGet(_REMOTE, '/instances/%s/tags?simplify' % i) | |
4626 return j['PatientName'] | |
4627 | |
4628 def ComparePatientName(name, dicom): | |
4629 self.assertEqual(name, GetPatientName(dicom)) | |
4630 | |
4631 # gdcmraw -t 10,10 -i SCSFREN -o /tmp/tag && uconv -f ISO-IR-100 -t UTF-8 /tmp/tag && echo | |
4632 ComparePatientName(u'Buc^Jérôme', 'Encodings/DavidClunie/SCSFREN') | |
4633 | |
4634 # gdcmraw -t 10,10 -i SCSI2 -o /tmp/tag && uconv -f KOREAN -t UTF-8 /tmp/tag && echo | |
4635 ComparePatientName(u'Hong^Gildong=洪^吉洞=홍^길동', 'Encodings/DavidClunie/SCSI2') # Since Orthanc 1.5.5 | |
4636 | |
4637 # gdcmraw -t 10,10 -i SCSX2 -o /tmp/tag && uconv -f GB18030 -t UTF-8 /tmp/tag && echo | |
4638 ComparePatientName(u'Wang^XiaoDong=王^小东=', 'Encodings/DavidClunie/SCSX2') | |
4639 | |
4640 # gdcmraw -t 10,10 -i SCSX1 -o /tmp/tag && cat /tmp/tag && echo | |
4641 ComparePatientName(u'Wang^XiaoDong=王^小東=', 'Encodings/DavidClunie/SCSX1') | |
4642 | |
4643 # gdcmraw -t 10,10 -i SCSH31 -o /tmp/tag && uconv -f JIS -t UTF-8 /tmp/tag && echo | |
4644 ComparePatientName(u'Yamada^Tarou=山田^太郎=やまだ^たろう', 'Encodings/DavidClunie/SCSH31') | |
4645 | |
4646 # gdcmraw -t 10,10 -i SCSGERM -o /tmp/tag && uconv -f ISO-IR-100 -t UTF-8 /tmp/tag && echo | |
4647 ComparePatientName(u'Äneas^Rüdiger', 'Encodings/DavidClunie/SCSGERM') | |
4648 | |
4649 # gdcmraw -t 10,10 -i SCSGREEK -o /tmp/tag && uconv -f ISO-IR-126 -t UTF-8 /tmp/tag && echo | |
4650 ComparePatientName(u'Διονυσιος', 'Encodings/DavidClunie/SCSGREEK') | |
4651 | |
4652 # gdcmraw -t 10,10 -i SCSRUSS -o /tmp/tag && uconv -f ISO-IR-144 -t UTF-8 /tmp/tag && echo | |
4653 ComparePatientName(u'Люкceмбypг', 'Encodings/DavidClunie/SCSRUSS') | |
4654 | |
4655 # gdcmraw -t 10,10 -i SCSHBRW -o /tmp/tag && uconv -f ISO-IR-138 -t UTF-8 /tmp/tag && echo | |
4656 # NB: Hebrew is a right-to-left encoding, copying/pasting from | |
4657 # Linux console into Emacs automatically reverse the string | |
4658 ComparePatientName(u'שרון^דבורה', 'Encodings/DavidClunie/SCSHBRW') | |
4659 | |
4660 # gdcmraw -t 10,10 -i SCSARAB -o /tmp/tag && uconv -f ISO-IR-127 -t UTF-8 /tmp/tag && echo | |
4661 # NB: Right-to-left as for Hebrew (SCSHBRW), and the Ubuntu console can't display such | |
4662 # characters by default, but copy/paste works with Emacs | |
4663 ComparePatientName(u'قباني^لنزار', 'Encodings/DavidClunie/SCSARAB') | |
4664 | |
4665 # SCSH32: This SpecificCharacterSet is composed of 2 | |
4666 # codepages: "ISO 2022 IR 13" (i.e. "SHIFT_JIS") until the | |
4667 # first equal, then "ISO 2022 IR 87" (i.e. "JIS") for the | |
4668 # remainer. Orthanc only takes into consideration the first | |
4669 # codepage: This is a limitation. | |
4670 # gdcmraw -t 10,10 -i SCSH32 -o /tmp/tag && cut -d '=' -f 1 /tmp/tag | uconv -f SHIFT_JIS -t UTF-8 | |
4671 self.assertTrue(GetPatientName('Encodings/DavidClunie/SCSH32').startswith(u'ヤマダ^タロウ=')) | |
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4672 |
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4673 |
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4674 def test_findscu_missing_tags(self): |
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4675 # dcmodify -e Rows DummyCTInvalidRows.dcm -gst -gse -gin |
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4676 UploadInstance(_REMOTE, 'DummyCT.dcm') |
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4677 UploadInstance(_REMOTE, 'DummyCTInvalidRows.dcm') |
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4678 |
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4679 i = CallFindScu([ '-k', '0008,0052=IMAGES', '-k', 'Rows', '-k', 'PatientName' ]) |
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4680 |
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4681 # We have 2 instances... |
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4682 patientNames = re.findall('\(0010,0010\).*?\[(.*?)\]', i) |
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4683 self.assertEqual(2, len(patientNames)) |
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4684 self.assertEqual('KNIX', patientNames[0]) |
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4685 self.assertEqual('KNIX', patientNames[1]) |
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4686 |
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4687 # ...but only 1 value for the "Rows" tag |
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4688 rows = re.findall('\(0028,0010\) US ([0-9]+)', i) |
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4689 self.assertEqual(1, len(rows)) |
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4690 self.assertEqual('512', rows[0]) |
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4691 |
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4692 |
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4693 |
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4694 def test_bitbucket_issue_131(self): |
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4695 # "Orthanc PACS silently fails to C-MOVE due to duplicate |
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4696 # StudyInstanceUID in it's database." |
319 | 4697 # https://bugs.orthanc-server.com/show_bug.cgi?id=131 |
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4698 |
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4699 # Insert 2 instances, with the same StudyInstanceUID, but with |
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4700 # different patient IDs. Orthanc will create 2 distincts |
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4701 # patients, and the hierarchy of resources above the two |
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4702 # instances will be fully disjoint. |
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4703 UploadInstance(_REMOTE, 'PatientIdsCollision/Issue131-a.dcm') |
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4704 UploadInstance(_REMOTE, 'PatientIdsCollision/Issue131-b.dcm') |
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4705 |
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4706 self.assertEqual(2, len(DoGet(_REMOTE, '/patients'))) |
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4707 self.assertEqual(2, len(DoGet(_REMOTE, '/studies'))) |
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4708 |
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4709 a = DoPost(_REMOTE, '/modalities/self/query', { |
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|
4710 'Level' : 'Study', |
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4711 'Query' : {"PatientID": "A" }})['ID'] |
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|
4712 |
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|
4713 # 1 study is matched |
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4714 self.assertEqual(1, len(DoGet(_REMOTE, '/queries/%s/answers' % a))) |
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|
4715 |
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|
4716 self.assertEqual(0, len(DoGet(_LOCAL, '/instances'))) |
220 | 4717 WaitAllNewJobsDone(_REMOTE, lambda: DoPost |
4718 (_REMOTE, '/queries/%s/retrieve' % a, | |
4719 '{"TargetAet":"ORTHANCTEST","Synchronous":false}')) | |
219
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|
4720 |
00e5aeea33dd
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|
4721 # The two studies are matched, as we made the request at the |
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|
4722 # Study level, thus the shared StudyInstanceUID is used as the key |
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4723 self.assertEqual(2, len(DoGet(_LOCAL, '/instances'))) |
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|
4724 |
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diff
changeset
|
4725 |
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|
4726 # Match the 2 studies |
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|
4727 a = DoPost(_REMOTE, '/modalities/self/query', { |
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diff
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|
4728 'Level' : 'Study', |
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|
4729 'Query' : {"StudyInstanceUID": "2.25.123" }})['ID'] |
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4730 self.assertEqual(2, len(DoGet(_REMOTE, '/queries/%s/answers' % a))) |
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diff
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|
4731 DropOrthanc(_LOCAL) |
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diff
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|
4732 self.assertEqual(0, len(DoGet(_LOCAL, '/instances'))) |
220 | 4733 WaitAllNewJobsDone(_REMOTE, lambda: DoPost |
4734 (_REMOTE, '/queries/%s/retrieve' % a, | |
4735 '{"TargetAet":"ORTHANCTEST","Synchronous":false}')) | |
219
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|
4736 self.assertEqual(2, len(DoGet(_LOCAL, '/instances'))) |
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|
4737 |
00e5aeea33dd
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diff
changeset
|
4738 |
00e5aeea33dd
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changeset
|
4739 # Same test, at the patient level => only 1 instance is transfered |
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|
4740 a = DoPost(_REMOTE, '/modalities/self/query', { |
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diff
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|
4741 'Level' : 'Patient', |
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|
4742 'Query' : {"PatientID": "A" }})['ID'] |
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diff
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|
4743 self.assertEqual(1, len(DoGet(_REMOTE, '/queries/%s/answers' % a))) |
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diff
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|
4744 DropOrthanc(_LOCAL) |
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diff
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|
4745 self.assertEqual(0, len(DoGet(_LOCAL, '/instances'))) |
220 | 4746 WaitAllNewJobsDone(_REMOTE, lambda: DoPost |
4747 (_REMOTE, '/queries/%s/retrieve' % a, | |
4748 '{"TargetAet":"ORTHANCTEST","Synchronous":false}')) | |
219
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diff
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|
4749 self.assertEqual(1, len(DoGet(_LOCAL, '/instances'))) |
00e5aeea33dd
test_bitbucket_issue_131
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diff
changeset
|
4750 |
00e5aeea33dd
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diff
changeset
|
4751 |
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test_bitbucket_issue_131
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diff
changeset
|
4752 # Same test, at the series level => only 1 instance is transfered |
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diff
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|
4753 a = DoPost(_REMOTE, '/modalities/self/query', { |
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test_bitbucket_issue_131
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218
diff
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|
4754 'Level' : 'Series', |
00e5aeea33dd
test_bitbucket_issue_131
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218
diff
changeset
|
4755 'Query' : {"PatientID": "A" }})['ID'] |
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test_bitbucket_issue_131
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218
diff
changeset
|
4756 self.assertEqual(1, len(DoGet(_REMOTE, '/queries/%s/answers' % a))) |
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218
diff
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|
4757 DropOrthanc(_LOCAL) |
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parents:
218
diff
changeset
|
4758 self.assertEqual(0, len(DoGet(_LOCAL, '/instances'))) |
220 | 4759 WaitAllNewJobsDone(_REMOTE, lambda: DoPost |
4760 (_REMOTE, '/queries/%s/retrieve' % a, | |
4761 '{"TargetAet":"ORTHANCTEST","Synchronous":false}')) | |
219
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test_bitbucket_issue_131
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parents:
218
diff
changeset
|
4762 self.assertEqual(1, len(DoGet(_LOCAL, '/instances'))) |
00e5aeea33dd
test_bitbucket_issue_131
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218
diff
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|
4763 |
233
ce0b19a2c807
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231
diff
changeset
|
4764 |
ce0b19a2c807
test_bitbucket_issue_136
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231
diff
changeset
|
4765 def test_bitbucket_issue_136(self): |
ce0b19a2c807
test_bitbucket_issue_136
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231
diff
changeset
|
4766 UploadInstance(_REMOTE, 'Issue137.dcm') |
ce0b19a2c807
test_bitbucket_issue_136
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231
diff
changeset
|
4767 i = CallFindScu([ '-k', '0008,0052=STUDY', '-k', '0010,0010', '-k', '0028,0010', '-k', '0040,0275' ]) |
ce0b19a2c807
test_bitbucket_issue_136
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231
diff
changeset
|
4768 patientNames = re.findall('\(0010,0010\).*?\[(.*?)\]', i) |
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test_bitbucket_issue_136
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parents:
231
diff
changeset
|
4769 self.assertEqual(1, len(patientNames)) |
ce0b19a2c807
test_bitbucket_issue_136
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parents:
231
diff
changeset
|
4770 self.assertEqual('John Doe', patientNames[0]) |
234
93cd4fdd4a67
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233
diff
changeset
|
4771 |
93cd4fdd4a67
test_anonymize_relationships_4
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233
diff
changeset
|
4772 |
93cd4fdd4a67
test_anonymize_relationships_4
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233
diff
changeset
|
4773 def test_anonymize_relationships_4(self): |
93cd4fdd4a67
test_anonymize_relationships_4
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233
diff
changeset
|
4774 # https://groups.google.com/d/msg/orthanc-users/UkcsqyTpszE/bXUpzU0vAAAJ |
93cd4fdd4a67
test_anonymize_relationships_4
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233
diff
changeset
|
4775 sr1 = UploadInstance(_REMOTE, 'HierarchicalAnonymization/2019-03-28/CR000000.dcm')['ID'] |
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test_anonymize_relationships_4
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233
diff
changeset
|
4776 mr1 = UploadInstance(_REMOTE, 'HierarchicalAnonymization/2019-03-28/PR000000.dcm')['ID'] |
93cd4fdd4a67
test_anonymize_relationships_4
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233
diff
changeset
|
4777 study = '0c923249-d52121a9-2b7167f7-6b85534f-0943697e' |
93cd4fdd4a67
test_anonymize_relationships_4
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233
diff
changeset
|
4778 |
93cd4fdd4a67
test_anonymize_relationships_4
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233
diff
changeset
|
4779 anonymized = DoPost(_REMOTE, '/studies/%s/anonymize' % study, '{}', |
93cd4fdd4a67
test_anonymize_relationships_4
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233
diff
changeset
|
4780 'application/json')['ID'] |
93cd4fdd4a67
test_anonymize_relationships_4
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233
diff
changeset
|
4781 series = DoGet(_REMOTE, '/studies/%s/series' % anonymized) |
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test_anonymize_relationships_4
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233
diff
changeset
|
4782 self.assertEqual(2, len(series)) |
93cd4fdd4a67
test_anonymize_relationships_4
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233
diff
changeset
|
4783 |
93cd4fdd4a67
test_anonymize_relationships_4
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233
diff
changeset
|
4784 cr = list(filter(lambda x: x['MainDicomTags']['Modality'] == 'CR', series)) |
93cd4fdd4a67
test_anonymize_relationships_4
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233
diff
changeset
|
4785 pr = list(filter(lambda x: x['MainDicomTags']['Modality'] == 'PR', series)) |
93cd4fdd4a67
test_anonymize_relationships_4
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233
diff
changeset
|
4786 self.assertEqual(1, len(cr)) |
93cd4fdd4a67
test_anonymize_relationships_4
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diff
changeset
|
4787 self.assertEqual(1, len(pr)) |
93cd4fdd4a67
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diff
changeset
|
4788 self.assertEqual(1, len(cr[0]['Instances'])) |
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diff
changeset
|
4789 self.assertEqual(1, len(pr[0]['Instances'])) |
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test_anonymize_relationships_4
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diff
changeset
|
4790 |
93cd4fdd4a67
test_anonymize_relationships_4
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diff
changeset
|
4791 crinstance = DoGet(_REMOTE, '/instances/%s' % cr[0]['Instances'][0]) |
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test_anonymize_relationships_4
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diff
changeset
|
4792 tags = DoGet(_REMOTE, '/instances/%s/tags?short' % pr[0]['Instances'][0]) |
93cd4fdd4a67
test_anonymize_relationships_4
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diff
changeset
|
4793 |
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diff
changeset
|
4794 self.assertEqual(tags['0008,1115'][0]['0008,1140'][0]['0008,1155'], |
93cd4fdd4a67
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233
diff
changeset
|
4795 crinstance['MainDicomTags']['SOPInstanceUID']) |
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diff
changeset
|
4796 self.assertEqual(tags['0008,1115'][0]['0008,1140'][0]['0008,1150'], |
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diff
changeset
|
4797 '1.2.840.10008.5.1.4.1.1.1') # SOP class for CR Image Storage |
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diff
changeset
|
4798 |
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diff
changeset
|
4799 # This fails on Orthanc <= 1.5.6 |
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diff
changeset
|
4800 self.assertEqual(tags['0008,1115'][0]['0020,000e'], |
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diff
changeset
|
4801 cr[0]['MainDicomTags']['SeriesInstanceUID']) |
235
9929e4af2b7a
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diff
changeset
|
4802 |
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diff
changeset
|
4803 |
255
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diff
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|
4804 def test_anonymize_relationships_5(self): |
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254
diff
changeset
|
4805 ct1 = UploadInstance(_REMOTE, 'HierarchicalAnonymization/RTH/CT01.dcm') |
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diff
changeset
|
4806 rt1 = UploadInstance(_REMOTE, 'HierarchicalAnonymization/RTH/RT.dcm') |
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diff
changeset
|
4807 oStudyId = ct1['ParentStudy'] |
02c3d91b155c
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diff
changeset
|
4808 oCtInstanceId = ct1['ID'] |
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diff
changeset
|
4809 oRtInstanceId = rt1['ID'] |
02c3d91b155c
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parents:
254
diff
changeset
|
4810 |
02c3d91b155c
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254
diff
changeset
|
4811 oCtTags = DoGet(_REMOTE, '/instances/%s/tags?simplify' % oCtInstanceId) |
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diff
changeset
|
4812 oRtTags = DoGet(_REMOTE, '/instances/%s/tags?simplify' % oRtInstanceId) |
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parents:
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diff
changeset
|
4813 |
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parents:
254
diff
changeset
|
4814 # first validate the relationships in the source data |
02c3d91b155c
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254
diff
changeset
|
4815 oStudyUID = oCtTags['StudyInstanceUID'] |
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diff
changeset
|
4816 oRtSeriesUID = oRtTags['SeriesInstanceUID'] |
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diff
changeset
|
4817 oRtInstanceUID = oRtTags['SOPInstanceUID'] |
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diff
changeset
|
4818 oRtFrameOfReferenceUID = oRtTags['ReferencedFrameOfReferenceSequence'][0]['FrameOfReferenceUID'] |
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parents:
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diff
changeset
|
4819 oCtSeriesUID = oCtTags['SeriesInstanceUID'] |
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254
diff
changeset
|
4820 oCtInstanceUID = oCtTags['SOPInstanceUID'] |
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diff
changeset
|
4821 oCtFrameOfReferenceUID = oCtTags['FrameOfReferenceUID'] |
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parents:
254
diff
changeset
|
4822 |
02c3d91b155c
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parents:
254
diff
changeset
|
4823 oContourSequenceCount = len(oRtTags['ROIContourSequence'][0]['ContourSequence']) |
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diff
changeset
|
4824 self.assertEqual(oCtFrameOfReferenceUID, oRtFrameOfReferenceUID) |
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parents:
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diff
changeset
|
4825 self.assertEqual(oStudyUID, oRtTags['ReferencedFrameOfReferenceSequence'][0]['RTReferencedStudySequence'][0]['ReferencedSOPInstanceUID']) |
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diff
changeset
|
4826 self.assertEqual(oCtSeriesUID, oRtTags['ReferencedFrameOfReferenceSequence'][0]['RTReferencedStudySequence'][0]['RTReferencedSeriesSequence'][0]['SeriesInstanceUID']) |
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4827 self.assertEqual(oCtInstanceUID, oRtTags['ReferencedFrameOfReferenceSequence'][0]['RTReferencedStudySequence'][0]['RTReferencedSeriesSequence'][0]['ContourImageSequence'][0]['ReferencedSOPInstanceUID']) |
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4828 self.assertEqual(oCtInstanceUID, oRtTags['ROIContourSequence'][0]['ContourSequence'][oContourSequenceCount-1]['ContourImageSequence'][0]['ReferencedSOPInstanceUID']) |
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4829 |
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4830 ### anonymize |
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4831 |
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4832 aStudyId = DoPost(_REMOTE, '/studies/%s/anonymize' % oStudyId, '{}', |
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4833 'application/json')['ID'] |
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4834 |
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4835 ### validate |
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4836 |
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4837 aSeries = DoGet(_REMOTE, '/studies/%s/series' % aStudyId) |
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4838 self.assertEqual(2, len(aSeries)) |
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4839 |
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4840 aCt = list(filter(lambda x: x['MainDicomTags']['Modality'] == 'CT', aSeries)) |
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4841 aRt = list(filter(lambda x: x['MainDicomTags']['Modality'] == 'RTSTRUCT', aSeries)) |
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4842 aCtInstanceId = aCt[0]['Instances'][0] |
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4843 aRtInstanceId = aRt[0]['Instances'][0] |
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4844 aCtTags = DoGet(_REMOTE, '/instances/%s/tags?simplify' % aCtInstanceId) |
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4845 aRtTags = DoGet(_REMOTE, '/instances/%s/tags?simplify' % aRtInstanceId) |
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4846 |
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4847 # now validate the relationships in the anonymized data |
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4848 aStudyUID = aCtTags['StudyInstanceUID'] |
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4849 aRtSeriesUID = aRtTags['SeriesInstanceUID'] |
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4850 aRtInstanceUID = aRtTags['SOPInstanceUID'] |
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4851 aRtFrameOfReferenceUID = aRtTags['ReferencedFrameOfReferenceSequence'][0]['FrameOfReferenceUID'] |
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4852 aCtSeriesUID = aCtTags['SeriesInstanceUID'] |
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4853 aCtInstanceUID = aCtTags['SOPInstanceUID'] |
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4854 aCtFrameOfReferenceUID = aCtTags['FrameOfReferenceUID'] |
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4855 |
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4856 aContourSequenceCount = len(aRtTags['ROIContourSequence'][0]['ContourSequence']) |
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4857 # make sure all UIDs have been updated |
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4858 self.assertNotEqual(oStudyUID, aStudyUID) |
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4859 self.assertNotEqual(oRtSeriesUID, aRtSeriesUID) |
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4860 self.assertNotEqual(oRtInstanceUID, aRtInstanceUID) |
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4861 self.assertNotEqual(oRtFrameOfReferenceUID, aRtFrameOfReferenceUID) |
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4862 self.assertNotEqual(oCtSeriesUID, aCtSeriesUID) |
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4863 self.assertNotEqual(oCtInstanceUID, aCtInstanceUID) |
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4864 self.assertNotEqual(oCtFrameOfReferenceUID, aCtFrameOfReferenceUID) |
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4865 |
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4866 # validate the relationships |
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4867 self.assertEqual(oContourSequenceCount, aContourSequenceCount) |
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4868 self.assertEqual(aCtFrameOfReferenceUID, aRtFrameOfReferenceUID) |
256 | 4869 self.assertEqual(aStudyUID, aRtTags['ReferencedFrameOfReferenceSequence'][0]['RTReferencedStudySequence'][0]['ReferencedSOPInstanceUID']) |
4870 self.assertEqual(aCtSeriesUID, aRtTags['ReferencedFrameOfReferenceSequence'][0]['RTReferencedStudySequence'][0]['RTReferencedSeriesSequence'][0]['SeriesInstanceUID']) | |
255
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4871 self.assertEqual(aCtInstanceUID, aRtTags['ReferencedFrameOfReferenceSequence'][0]['RTReferencedStudySequence'][0]['RTReferencedSeriesSequence'][0]['ContourImageSequence'][0]['ReferencedSOPInstanceUID']) |
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4872 self.assertEqual(aCtInstanceUID, aRtTags['ROIContourSequence'][0]['ContourSequence'][aContourSequenceCount-1]['ContourImageSequence'][0]['ReferencedSOPInstanceUID']) |
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4873 |
256 | 4874 def test_anonymize_relationships_5b(self): |
4875 # same test as previous one but, this time, we force the StudyInstanceUID | |
4876 ct1 = UploadInstance(_REMOTE, 'HierarchicalAnonymization/RTH/CT01.dcm') | |
4877 rt1 = UploadInstance(_REMOTE, 'HierarchicalAnonymization/RTH/RT.dcm') | |
4878 oStudyId = ct1['ParentStudy'] | |
4879 oCtInstanceId = ct1['ID'] | |
4880 oRtInstanceId = rt1['ID'] | |
4881 | |
4882 oCtTags = DoGet(_REMOTE, '/instances/%s/tags?simplify' % oCtInstanceId) | |
4883 oRtTags = DoGet(_REMOTE, '/instances/%s/tags?simplify' % oRtInstanceId) | |
4884 | |
4885 ### anonymize while forcing the StudyInstanceUID | |
4886 | |
4887 aStudyId = DoPost(_REMOTE, '/studies/%s/anonymize' % oStudyId, '{ "Replace" : { "StudyInstanceUID" : "1.2.3.4"}, "Force": true}', | |
4888 'application/json')['ID'] | |
4889 | |
4890 ### validate | |
4891 | |
4892 aSeries = DoGet(_REMOTE, '/studies/%s/series' % aStudyId) | |
4893 self.assertEqual(2, len(aSeries)) | |
4894 | |
4895 aCt = list(filter(lambda x: x['MainDicomTags']['Modality'] == 'CT', aSeries)) | |
4896 aRt = list(filter(lambda x: x['MainDicomTags']['Modality'] == 'RTSTRUCT', aSeries)) | |
4897 aCtInstanceId = aCt[0]['Instances'][0] | |
4898 aRtInstanceId = aRt[0]['Instances'][0] | |
4899 aCtTags = DoGet(_REMOTE, '/instances/%s/tags?simplify' % aCtInstanceId) | |
4900 aRtTags = DoGet(_REMOTE, '/instances/%s/tags?simplify' % aRtInstanceId) | |
4901 | |
4902 self.assertEqual("1.2.3.4", aCtTags['StudyInstanceUID']) | |
4903 self.assertEqual("1.2.3.4", aRtTags['StudyInstanceUID']) | |
4904 self.assertEqual("1.2.3.4", aRtTags['ReferencedFrameOfReferenceSequence'][0]['RTReferencedStudySequence'][0]['ReferencedSOPInstanceUID']) | |
255
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4905 |
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4906 |
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4907 def test_bitbucket_issue_140(self): |
266 | 4908 # "Modifying private tags with REST API changes VR from LO to |
267 | 4909 # UN." This test fails if DCMTK <= 3.6.1 (e.g. fails on Ubuntu 16.04). |
319 | 4910 # https://bugs.orthanc-server.com/show_bug.cgi?id=140 |
235
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4911 source = UploadInstance(_REMOTE, 'Issue140.dcm') ['ID'] |
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4912 series = DoGet(_REMOTE, '/instances/%s' % source) ['ParentSeries'] |
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4913 |
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4914 target = DoPost(_REMOTE, '/series/%s/modify' % series, { |
266 | 4915 'Replace' : { 'RadioButton3' : 'aaabbbccc' }, |
4916 'PrivateCreator' : 'RadioLogic', # <= the trick is here | |
235
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4917 }, 'application/json') ['ID'] |
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4918 |
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4919 instances = DoGet(_REMOTE, '/series/%s/instances' % target) |
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4920 self.assertEqual(1, len(instances)) |
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4921 |
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4922 tags = DoGet(_REMOTE, '/instances/%s/tags' % source) |
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4923 t = tags['4321,1012'] |
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4924 self.assertEqual('String', t['Type']) |
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4925 self.assertEqual('RadioButton3', t['Name']) |
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4926 self.assertEqual('RadioLogic', t['PrivateCreator']) |
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4927 self.assertEqual('jklmopq', t['Value']) |
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4928 |
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4929 tags = DoGet(_REMOTE, '/instances/%s/tags' % instances[0]['ID']) |
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4930 t = tags['4321,1012'] |
327 | 4931 self.assertEqual('String', t['Type']) # This fails if DCMTK <= 3.6.1 |
235
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4932 self.assertEqual('RadioButton3', t['Name']) |
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4933 self.assertEqual('RadioLogic', t['PrivateCreator']) |
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4934 self.assertEqual('aaabbbccc', t['Value']) |
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4935 |
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4936 |
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4937 def test_find_normalize(self): |
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4938 # https://groups.google.com/d/msg/orthanc-users/AIwooGjsh94/YL28MNY4AgAJ |
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4939 |
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4940 UploadInstance(_REMOTE, 'Knee/T1/IM-0001-0001.dcm') |
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4941 |
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4942 a = DoPost(_REMOTE, '/modalities/self/query', { |
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4943 'Level' : 'Instance', |
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4944 'Query' : { 'Rows' : '42' } |
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4945 }) ['ID'] |
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4946 |
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4947 b = DoGet(_REMOTE, '/queries/%s/answers?expand&simplify' % a) |
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4948 self.assertEqual(1, len(b)) |
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4949 self.assertFalse('Rows' in b[0]) |
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4950 |
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4951 a = DoPost(_REMOTE, '/modalities/self/query', { |
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4952 'Level' : 'Instance', |
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4953 'Query' : { 'Rows' : '42' }, |
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4954 'Normalize' : False |
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4955 }) ['ID'] |
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4956 |
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4957 b = DoGet(_REMOTE, '/queries/%s/answers' % a) |
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4958 self.assertEqual(0, len(b)) |
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4959 |
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4960 a = DoPost(_REMOTE, '/modalities/self/query', { |
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4961 'Level' : 'Instance', |
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4962 'Query' : { 'Rows' : '512' }, |
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4963 'Normalize' : False |
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4964 }) ['ID'] |
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4965 |
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4966 b = DoGet(_REMOTE, '/queries/%s/answers?expand&simplify' % a) |
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4967 self.assertEqual(1, len(b)) |
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4968 self.assertTrue('Rows' in b[0]) |
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4969 self.assertEqual('512', b[0]['Rows']) |
237 | 4970 |
4971 a = DoPost(_REMOTE, '/modalities/self/query', { | |
4972 'Level' : 'Instance', | |
4973 'Query' : { 'Rows' : '' }, | |
4974 'Normalize' : False | |
4975 }) ['ID'] | |
4976 | |
4977 b = DoGet(_REMOTE, '/queries/%s/answers?expand&simplify' % a) | |
4978 self.assertEqual(1, len(b)) | |
4979 self.assertTrue('Rows' in b[0]) | |
4980 self.assertEqual('512', b[0]['Rows']) | |
4981 | |
4982 self.assertRaises(Exception, lambda: DoPost( | |
4983 _REMOTE, '/modalities/self/query', { | |
4984 'Level' : 'Instance', | |
4985 'Query' : { 'Rows' : '*' }, # Out-of-range value | |
4986 'Normalize' : False | |
4987 })) | |
243
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|
4988 |
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diff
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|
4989 |
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test_bitbucket_issue_141
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|
4990 def test_bitbucket_issue_141(self): |
319 | 4991 # https://bugs.orthanc-server.com/show_bug.cgi?id=141 |
243
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|
4992 a = UploadInstance(_REMOTE, 'Issue141.dcm') ['ID'] |
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|
4993 study = '494c8037-b237f263-d8f15075-c8cb2280-daf39bd1' |
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|
4994 |
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test_bitbucket_issue_141
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diff
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|
4995 with open(GetDatabasePath('HelloWorld.pdf'), 'rb') as f: |
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|
4996 pdf = f.read() |
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|
4997 |
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diff
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|
4998 b = DoPost(_REMOTE, '/tools/create-dicom', { |
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4999 'Parent' : study, |
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|
5000 'Tags' : {}, |
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|
5001 'Content' : 'data:application/pdf;base64,' + base64.b64encode(pdf) |
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5002 }) ['ID'] |
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|
5003 |
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|
5004 tagsA = DoGet(_REMOTE, '/instances/%s/tags?short' % a) |
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5005 tagsB = DoGet(_REMOTE, '/instances/%s/tags?short' % b) |
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5006 self.assertEqual(tagsA['0008,0005'], tagsB['0008,0005']) |
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|
5007 self.assertEqual(tagsA['0008,1030'], tagsB['0008,1030']) |
247
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5008 |
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|
5009 |
1abdab0ba0e6
test_modifying_missing_patientid
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|
5010 def test_modifying_missing_patientid(self): |
1abdab0ba0e6
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|
5011 # https://groups.google.com/d/msg/orthanc-users/aphG_h1AHVg/rfOTtTPTAgAJ |
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|
5012 UploadInstance(_REMOTE, '2019-06-17-VedranZdesic.dcm') |
1abdab0ba0e6
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|
5013 DoPost(_REMOTE, '/studies/0c4aca1d-c107a241-6659d6aa-594c674a-a468b94a/modify', {}) |
262 | 5014 |
5015 | |
5016 def test_log_level(self): | |
319 | 5017 # https://bugs.orthanc-server.com/show_bug.cgi?id=65 |
262 | 5018 original = DoGet(_REMOTE, '/tools/log-level') |
5019 | |
5020 DoPut(_REMOTE, '/tools/log-level', 'default') | |
5021 self.assertEqual('default', DoGet(_REMOTE, '/tools/log-level')) | |
5022 DoGet(_REMOTE, '/system') | |
5023 | |
5024 DoPut(_REMOTE, '/tools/log-level', 'verbose') | |
5025 self.assertEqual('verbose', DoGet(_REMOTE, '/tools/log-level')) | |
5026 DoGet(_REMOTE, '/system') | |
5027 | |
5028 DoPut(_REMOTE, '/tools/log-level', 'trace') | |
5029 self.assertEqual('trace', DoGet(_REMOTE, '/tools/log-level')) | |
5030 DoGet(_REMOTE, '/system') | |
5031 | |
5032 self.assertRaises(Exception, lambda: DoPut(_REMOTE, '/tools/log-level', 'nope')) | |
5033 | |
5034 # Switch back to the original log level | |
5035 DoPut(_REMOTE, '/tools/log-level', original) | |
264
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|
5036 |
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|
5037 |
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test_upload_compressed
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|
5038 def test_upload_compressed(self): |
265 | 5039 # New in Orthanc 1.6.0 |
264
445f498bc1d4
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|
5040 with open(GetDatabasePath('DummyCT.dcm.gz'), 'rb') as f: |
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|
5041 d = f.read() |
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|
5042 |
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|
5043 self.assertRaises(Exception, lambda: DoPost(_REMOTE, '/instances', d, 'application/dicom')) |
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|
5044 |
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|
5045 self.assertRaises(Exception, lambda: DoPost(_REMOTE, '/instances', d, 'application/dicom', |
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|
5046 headers = { 'Content-Encoding' : 'nope' })) |
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|
5047 |
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|
5048 a = DoPost(_REMOTE, '/instances', d, 'application/dicom', |
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|
5049 headers = { 'Content-Encoding' : 'gzip' }) |
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263
diff
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|
5050 self.assertEqual('66a662ce-7430e543-bad44d47-0dc5a943-ec7a538d', a['ID']) |
262 | 5051 |
5052 | |
263
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Sebastien Jodogne <s.jodogne@gmail.com>
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262
diff
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|
5053 def test_study_series_find_inconsistency(self): |
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|
5054 # https://groups.google.com/forum/#!topic/orthanc-users/bLv6Z11COy0 |
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|
5055 |
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diff
changeset
|
5056 def CountAnswers(query): |
a2719263fd04
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diff
changeset
|
5057 a = DoPost(_REMOTE, 'modalities/self/query', query) |
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diff
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|
5058 return len(DoGet(_REMOTE, '%s/answers' % a['Path'])) |
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|
5059 |
a2719263fd04
test_study_series_find_inconsistency
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262
diff
changeset
|
5060 # This instance has "SeriesDescription" (0008,103e) tag, but no |
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parents:
262
diff
changeset
|
5061 # "ProtocolName" (0018,1030). Both of those tags are part of |
a2719263fd04
test_study_series_find_inconsistency
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parents:
262
diff
changeset
|
5062 # the "main DICOM tags" of Orthanc. |
a2719263fd04
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262
diff
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|
5063 UploadInstance(_REMOTE, 'Issue137.dcm') |
a2719263fd04
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diff
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|
5064 |
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diff
changeset
|
5065 |
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diff
changeset
|
5066 self.assertEqual(1, CountAnswers({ |
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diff
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|
5067 'Level' : 'Study', |
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diff
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|
5068 })) |
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diff
changeset
|
5069 |
a2719263fd04
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diff
changeset
|
5070 self.assertEqual(1, CountAnswers({ |
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diff
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|
5071 'Level' : 'Series', |
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diff
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|
5072 })) |
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diff
changeset
|
5073 |
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test_study_series_find_inconsistency
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diff
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|
5074 |
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test_study_series_find_inconsistency
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diff
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|
5075 ## |
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diff
changeset
|
5076 ## "SeriesDescription" is present, and has VR "CS" => wildcard is allowed |
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diff
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|
5077 ## http://dicom.nema.org/medical/dicom/2019e/output/chtml/part04/sect_C.2.2.2.4.html |
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|
5078 ## |
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|
5079 |
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diff
changeset
|
5080 # At the study level, the "SeriesDescription" tag is not allowed, but |
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|
5081 # is wiped out by the normalization |
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diff
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|
5082 self.assertEqual(0, CountAnswers({ |
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|
5083 'Level' : 'Study', |
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|
5084 'Query' : { |
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diff
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|
5085 'SeriesDescription' : 'NOPE' |
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|
5086 }, |
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|
5087 'Normalize' : False |
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|
5088 })) |
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diff
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|
5089 self.assertEqual(0, CountAnswers({ |
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diff
changeset
|
5090 # This test fails on Orthanc <= 1.5.8 |
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|
5091 'Level' : 'Study', |
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|
5092 'Query' : { |
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changeset
|
5093 'SeriesDescription' : '*' # Wildcard matching => no match, as the tag is absent |
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|
5094 }, |
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|
5095 'Normalize' : False |
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|
5096 })) |
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diff
changeset
|
5097 self.assertEqual(1, CountAnswers({ |
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|
5098 'Level' : 'Study', |
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|
5099 'Query' : { |
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|
5100 'SeriesDescription' : 'THIS^VALUE^IS^WIPED^OUT' |
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|
5101 }, |
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|
5102 'Normalize' : True |
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|
5103 })) |
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diff
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|
5104 self.assertEqual(1, CountAnswers({ |
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|
5105 'Level' : 'Study', |
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|
5106 'Query' : { |
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|
5107 'SeriesDescription' : '*' # Matches, as wiped out by the normalization |
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|
5108 }, |
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|
5109 'Normalize' : True |
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|
5110 })) |
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changeset
|
5111 |
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diff
changeset
|
5112 for normalize in [ True, False ]: |
a2719263fd04
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Sebastien Jodogne <s.jodogne@gmail.com>
parents:
262
diff
changeset
|
5113 # At the series level, the "SeriesDescription" tag is allowed, and |
a2719263fd04
test_study_series_find_inconsistency
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
262
diff
changeset
|
5114 # normalization has no effect |
a2719263fd04
test_study_series_find_inconsistency
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
262
diff
changeset
|
5115 |
a2719263fd04
test_study_series_find_inconsistency
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
262
diff
changeset
|
5116 # "Universal matching" will match all entities, including |
a2719263fd04
test_study_series_find_inconsistency
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
262
diff
changeset
|
5117 # those with the missing tag |
a2719263fd04
test_study_series_find_inconsistency
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
262
diff
changeset
|
5118 # http://dicom.nema.org/medical/dicom/2019e/output/chtml/part04/sect_C.2.2.2.3.html |
a2719263fd04
test_study_series_find_inconsistency
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
262
diff
changeset
|
5119 self.assertEqual(1, CountAnswers({ |
a2719263fd04
test_study_series_find_inconsistency
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
262
diff
changeset
|
5120 'Level' : 'Series', |
a2719263fd04
test_study_series_find_inconsistency
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
262
diff
changeset
|
5121 'Query' : { |
a2719263fd04
test_study_series_find_inconsistency
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
262
diff
changeset
|
5122 'SeriesDescription' : '' # Universal matching |
a2719263fd04
test_study_series_find_inconsistency
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
262
diff
changeset
|
5123 }, |
a2719263fd04
test_study_series_find_inconsistency
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
262
diff
changeset
|
5124 'Normalize' : normalize, |
a2719263fd04
test_study_series_find_inconsistency
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
262
diff
changeset
|
5125 })) |
a2719263fd04
test_study_series_find_inconsistency
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
262
diff
changeset
|
5126 # "Universal matching" will match all entities, including |
a2719263fd04
test_study_series_find_inconsistency
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
262
diff
changeset
|
5127 # those with the missing tag |
a2719263fd04
test_study_series_find_inconsistency
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
262
diff
changeset
|
5128 # http://dicom.nema.org/medical/dicom/2019e/output/chtml/part04/sect_C.2.2.2.3.html |
a2719263fd04
test_study_series_find_inconsistency
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
262
diff
changeset
|
5129 self.assertEqual(1, CountAnswers({ |
a2719263fd04
test_study_series_find_inconsistency
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
262
diff
changeset
|
5130 'Level' : 'Series', |
a2719263fd04
test_study_series_find_inconsistency
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
262
diff
changeset
|
5131 'Query' : { |
a2719263fd04
test_study_series_find_inconsistency
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
262
diff
changeset
|
5132 'SeriesDescription' : '*' # Wildcard matching |
a2719263fd04
test_study_series_find_inconsistency
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
262
diff
changeset
|
5133 }, |
a2719263fd04
test_study_series_find_inconsistency
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
262
diff
changeset
|
5134 'Normalize' : normalize, |
a2719263fd04
test_study_series_find_inconsistency
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
262
diff
changeset
|
5135 })) |
a2719263fd04
test_study_series_find_inconsistency
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
262
diff
changeset
|
5136 self.assertEqual(1, CountAnswers({ |
a2719263fd04
test_study_series_find_inconsistency
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
262
diff
changeset
|
5137 'Level' : 'Series', |
a2719263fd04
test_study_series_find_inconsistency
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
262
diff
changeset
|
5138 'Query' : { |
a2719263fd04
test_study_series_find_inconsistency
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
262
diff
changeset
|
5139 'SeriesDescription' : '*model*' # The actual value is "STL model: intraop Report" |
a2719263fd04
test_study_series_find_inconsistency
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
262
diff
changeset
|
5140 }, |
a2719263fd04
test_study_series_find_inconsistency
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
262
diff
changeset
|
5141 'Normalize' : normalize, |
a2719263fd04
test_study_series_find_inconsistency
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
262
diff
changeset
|
5142 })) |
a2719263fd04
test_study_series_find_inconsistency
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
262
diff
changeset
|
5143 self.assertEqual(0, CountAnswers({ |
a2719263fd04
test_study_series_find_inconsistency
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
262
diff
changeset
|
5144 'Level' : 'Series', |
a2719263fd04
test_study_series_find_inconsistency
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
262
diff
changeset
|
5145 'Query' : { |
a2719263fd04
test_study_series_find_inconsistency
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
262
diff
changeset
|
5146 'SeriesDescription' : '*MISMATCHED^VALUE*' |
a2719263fd04
test_study_series_find_inconsistency
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
262
diff
changeset
|
5147 }, |
a2719263fd04
test_study_series_find_inconsistency
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
262
diff
changeset
|
5148 'Normalize' : normalize, |
a2719263fd04
test_study_series_find_inconsistency
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
262
diff
changeset
|
5149 })) |
a2719263fd04
test_study_series_find_inconsistency
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
262
diff
changeset
|
5150 |
a2719263fd04
test_study_series_find_inconsistency
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
262
diff
changeset
|
5151 # Universal matching matches any instance, even if the |
a2719263fd04
test_study_series_find_inconsistency
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
262
diff
changeset
|
5152 # query is at the study-level, and thus if "SeriesDescription" |
a2719263fd04
test_study_series_find_inconsistency
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
262
diff
changeset
|
5153 # makes no sense |
a2719263fd04
test_study_series_find_inconsistency
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
262
diff
changeset
|
5154 self.assertEqual(1, CountAnswers({ |
a2719263fd04
test_study_series_find_inconsistency
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
262
diff
changeset
|
5155 'Level' : 'Study', |
a2719263fd04
test_study_series_find_inconsistency
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
262
diff
changeset
|
5156 'Query' : { |
a2719263fd04
test_study_series_find_inconsistency
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
262
diff
changeset
|
5157 'SeriesDescription' : '' # Universal matching |
a2719263fd04
test_study_series_find_inconsistency
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
262
diff
changeset
|
5158 }, |
a2719263fd04
test_study_series_find_inconsistency
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
262
diff
changeset
|
5159 'Normalize' : normalize, |
a2719263fd04
test_study_series_find_inconsistency
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
262
diff
changeset
|
5160 })) |
a2719263fd04
test_study_series_find_inconsistency
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
262
diff
changeset
|
5161 |
a2719263fd04
test_study_series_find_inconsistency
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
262
diff
changeset
|
5162 |
a2719263fd04
test_study_series_find_inconsistency
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
262
diff
changeset
|
5163 |
a2719263fd04
test_study_series_find_inconsistency
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
262
diff
changeset
|
5164 ## |
a2719263fd04
test_study_series_find_inconsistency
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
262
diff
changeset
|
5165 ## "ProtocolName" is absent, and has VR "CS" => wildcard is allowed |
a2719263fd04
test_study_series_find_inconsistency
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
262
diff
changeset
|
5166 ## |
a2719263fd04
test_study_series_find_inconsistency
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
262
diff
changeset
|
5167 |
a2719263fd04
test_study_series_find_inconsistency
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
262
diff
changeset
|
5168 # At the study level, the "ProtocolName" tag is not allowed, but |
a2719263fd04
test_study_series_find_inconsistency
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
262
diff
changeset
|
5169 # is wiped out by the normalization |
a2719263fd04
test_study_series_find_inconsistency
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
262
diff
changeset
|
5170 self.assertEqual(0, CountAnswers({ |
a2719263fd04
test_study_series_find_inconsistency
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
262
diff
changeset
|
5171 'Level' : 'Study', |
a2719263fd04
test_study_series_find_inconsistency
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
262
diff
changeset
|
5172 'Query' : { |
a2719263fd04
test_study_series_find_inconsistency
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
262
diff
changeset
|
5173 'ProtocolName' : 'NOPE' |
a2719263fd04
test_study_series_find_inconsistency
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
262
diff
changeset
|
5174 }, |
a2719263fd04
test_study_series_find_inconsistency
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
262
diff
changeset
|
5175 'Normalize' : False |
a2719263fd04
test_study_series_find_inconsistency
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
262
diff
changeset
|
5176 })) |
a2719263fd04
test_study_series_find_inconsistency
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
262
diff
changeset
|
5177 self.assertEqual(0, CountAnswers({ |
a2719263fd04
test_study_series_find_inconsistency
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
262
diff
changeset
|
5178 'Level' : 'Study', |
a2719263fd04
test_study_series_find_inconsistency
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
262
diff
changeset
|
5179 'Query' : { |
a2719263fd04
test_study_series_find_inconsistency
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
262
diff
changeset
|
5180 'ProtocolName' : '*' # Wildcard matching => no match, as the tag is absent |
a2719263fd04
test_study_series_find_inconsistency
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
262
diff
changeset
|
5181 }, |
a2719263fd04
test_study_series_find_inconsistency
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
262
diff
changeset
|
5182 'Normalize' : False |
a2719263fd04
test_study_series_find_inconsistency
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
262
diff
changeset
|
5183 })) |
a2719263fd04
test_study_series_find_inconsistency
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
262
diff
changeset
|
5184 self.assertEqual(1, CountAnswers({ |
a2719263fd04
test_study_series_find_inconsistency
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
262
diff
changeset
|
5185 'Level' : 'Study', |
a2719263fd04
test_study_series_find_inconsistency
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
262
diff
changeset
|
5186 'Query' : { |
a2719263fd04
test_study_series_find_inconsistency
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
262
diff
changeset
|
5187 'ProtocolName' : 'THIS^VALUE^IS^WIPED^OUT' |
a2719263fd04
test_study_series_find_inconsistency
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
262
diff
changeset
|
5188 }, |
a2719263fd04
test_study_series_find_inconsistency
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
262
diff
changeset
|
5189 'Normalize' : True |
a2719263fd04
test_study_series_find_inconsistency
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
262
diff
changeset
|
5190 })) |
a2719263fd04
test_study_series_find_inconsistency
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
262
diff
changeset
|
5191 self.assertEqual(1, CountAnswers({ |
a2719263fd04
test_study_series_find_inconsistency
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
262
diff
changeset
|
5192 'Level' : 'Study', |
a2719263fd04
test_study_series_find_inconsistency
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
262
diff
changeset
|
5193 'Query' : { |
a2719263fd04
test_study_series_find_inconsistency
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
262
diff
changeset
|
5194 'ProtocolName' : '*' # Matches, as wiped out by the normalization |
a2719263fd04
test_study_series_find_inconsistency
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
262
diff
changeset
|
5195 }, |
a2719263fd04
test_study_series_find_inconsistency
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
262
diff
changeset
|
5196 'Normalize' : True |
a2719263fd04
test_study_series_find_inconsistency
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
262
diff
changeset
|
5197 })) |
a2719263fd04
test_study_series_find_inconsistency
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
262
diff
changeset
|
5198 |
a2719263fd04
test_study_series_find_inconsistency
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
262
diff
changeset
|
5199 for normalize in [ True, False ]: |
a2719263fd04
test_study_series_find_inconsistency
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
262
diff
changeset
|
5200 # At the series level, the "ProtocolName" tag is allowed, and |
a2719263fd04
test_study_series_find_inconsistency
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
262
diff
changeset
|
5201 # normalization has no effect |
a2719263fd04
test_study_series_find_inconsistency
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
262
diff
changeset
|
5202 |
a2719263fd04
test_study_series_find_inconsistency
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
262
diff
changeset
|
5203 self.assertEqual(1, CountAnswers({ |
a2719263fd04
test_study_series_find_inconsistency
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
262
diff
changeset
|
5204 'Level' : 'Series', |
a2719263fd04
test_study_series_find_inconsistency
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
262
diff
changeset
|
5205 'Query' : { |
a2719263fd04
test_study_series_find_inconsistency
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
262
diff
changeset
|
5206 'ProtocolName' : '' # Universal matching |
a2719263fd04
test_study_series_find_inconsistency
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
262
diff
changeset
|
5207 }, |
a2719263fd04
test_study_series_find_inconsistency
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
262
diff
changeset
|
5208 'Normalize' : normalize, |
a2719263fd04
test_study_series_find_inconsistency
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
262
diff
changeset
|
5209 })) |
a2719263fd04
test_study_series_find_inconsistency
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
262
diff
changeset
|
5210 self.assertEqual(0, CountAnswers({ |
a2719263fd04
test_study_series_find_inconsistency
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
262
diff
changeset
|
5211 'Level' : 'Series', |
a2719263fd04
test_study_series_find_inconsistency
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
262
diff
changeset
|
5212 'Query' : { |
a2719263fd04
test_study_series_find_inconsistency
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
262
diff
changeset
|
5213 'ProtocolName' : '*' # Wildcard matching => no match, as the tag is absent |
a2719263fd04
test_study_series_find_inconsistency
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
262
diff
changeset
|
5214 }, |
a2719263fd04
test_study_series_find_inconsistency
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
262
diff
changeset
|
5215 'Normalize' : normalize, |
a2719263fd04
test_study_series_find_inconsistency
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
262
diff
changeset
|
5216 })) |
a2719263fd04
test_study_series_find_inconsistency
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
262
diff
changeset
|
5217 self.assertEqual(0, CountAnswers({ |
a2719263fd04
test_study_series_find_inconsistency
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
262
diff
changeset
|
5218 'Level' : 'Series', |
a2719263fd04
test_study_series_find_inconsistency
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
262
diff
changeset
|
5219 'Query' : { |
a2719263fd04
test_study_series_find_inconsistency
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
262
diff
changeset
|
5220 'ProtocolName' : '*MISMATCHED^VALUE*' |
a2719263fd04
test_study_series_find_inconsistency
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
262
diff
changeset
|
5221 }, |
a2719263fd04
test_study_series_find_inconsistency
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
262
diff
changeset
|
5222 'Normalize' : normalize, |
a2719263fd04
test_study_series_find_inconsistency
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
262
diff
changeset
|
5223 })) |
a2719263fd04
test_study_series_find_inconsistency
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
262
diff
changeset
|
5224 |
a2719263fd04
test_study_series_find_inconsistency
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
262
diff
changeset
|
5225 self.assertEqual(1, CountAnswers({ |
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5226 'Level' : 'Study', |
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5227 'Query' : { |
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5228 'ProtocolName' : '' # Universal matching |
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5229 }, |
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5230 'Normalize' : normalize, |
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5231 })) |
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5232 |
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5233 |
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5234 ## |
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5235 ## "StudyInstanceUID" is present, and has VR "UI" => wildcard is not allowed |
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5236 ## |
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5237 |
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5238 for level in [ 'Study', 'Series' ] : |
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5239 for normalize in [ True, False ]: |
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5240 self.assertEqual(1, CountAnswers({ |
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5241 'Level' : level, |
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5242 'Query' : { |
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5243 'StudyInstanceUID' : '' # Universal matching |
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5244 }, |
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5245 'Normalize' : normalize, |
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5246 })) |
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5247 self.assertEqual(0, CountAnswers({ |
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5248 'Level' : level, |
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5249 'Query' : { |
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5250 'StudyInstanceUID' : 'MISMATCHED^VALUE' |
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5251 }, |
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5252 'Normalize' : normalize, |
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5253 })) |
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5254 self.assertEqual(1, CountAnswers({ |
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5255 'Level' : level, |
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5256 'Query' : { |
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5257 'StudyInstanceUID' : '4.5.6' # This is the actual value |
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5258 }, |
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5259 'Normalize' : normalize, |
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5260 })) |
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5261 |
269 | 5262 # Wildcard matching is not allowed for this VR |
263
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5263 # This test fails on Orthanc <= 1.5.8 |
269 | 5264 self.assertRaises(Exception, lambda: CountAnswers({ |
263
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5265 'Level' : level, |
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5266 'Query' : { |
269 | 5267 'StudyInstanceUID' : '*' |
263
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5268 }, |
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5269 'Normalize' : normalize, |
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5270 })) |
265 | 5271 |
5272 | |
5273 def test_rendered(self): | |
5274 # New in Orthanc 1.6.0 | |
5275 i = UploadInstance(_REMOTE, 'ColorTestMalaterre.dcm')['ID'] | |
5276 im = GetImage(_REMOTE, '/instances/%s/rendered' % i) | |
5277 self.assertEqual("RGB", im.mode) | |
5278 self.assertEqual(41, im.size[0]) | |
5279 self.assertEqual(41, im.size[1]) | |
5280 | |
5281 # http://effbot.org/zone/pil-comparing-images.htm | |
5282 truth = Image.open(GetDatabasePath('ColorTestMalaterre.png')) | |
5283 self.assertTrue(ImageChops.difference(im, truth).getbbox() is None) | |
5284 | |
5285 im = GetImage(_REMOTE, '/instances/%s/rendered?width=10' % i) | |
5286 self.assertEqual("RGB", im.mode) | |
5287 self.assertEqual(10, im.size[0]) | |
5288 self.assertEqual(10, im.size[1]) | |
5289 | |
5290 im = GetImage(_REMOTE, '/instances/%s/rendered?height=10' % i) | |
5291 self.assertEqual("RGB", im.mode) | |
5292 self.assertEqual(10, im.size[0]) | |
5293 self.assertEqual(10, im.size[1]) | |
5294 | |
5295 im = GetImage(_REMOTE, '/instances/%s/rendered?height=128' % i) | |
5296 self.assertEqual("RGB", im.mode) | |
5297 self.assertEqual(128, im.size[0]) | |
5298 self.assertEqual(128, im.size[1]) | |
5299 | |
5300 im = GetImage(_REMOTE, '/instances/%s/rendered?height=10&smooth=0' % i) | |
5301 self.assertEqual("RGB", im.mode) | |
5302 self.assertEqual(10, im.size[0]) | |
5303 self.assertEqual(10, im.size[1]) | |
5304 | |
5305 im = GetImage(_REMOTE, '/instances/%s/rendered?height=10&smooth=1' % i) | |
5306 self.assertEqual("RGB", im.mode) | |
5307 self.assertEqual(10, im.size[0]) | |
5308 self.assertEqual(10, im.size[1]) | |
5309 | |
5310 im = GetImage(_REMOTE, '/instances/%s/rendered?height=5&width=10' % i) | |
5311 self.assertEqual("RGB", im.mode) | |
5312 self.assertEqual(5, im.size[0]) | |
5313 self.assertEqual(5, im.size[1]) | |
5314 | |
5315 | |
5316 # Grayscale image | |
5317 i = UploadInstance(_REMOTE, 'Brainix/Flair/IM-0001-0001.dcm')['ID'] | |
5318 im = GetImage(_REMOTE, '/instances/%s/rendered' % i) | |
5319 self.assertEqual("L", im.mode) | |
5320 self.assertEqual(288, im.size[0]) | |
5321 self.assertEqual(288, im.size[1]) | |
5322 self.assertEqual(0, im.getpixel((0, 0))) | |
5323 | |
5324 # Those are the original windowing parameters that are written | |
5325 # inside the DICOM file | |
5326 im2 = GetImage(_REMOTE, '/instances/%s/rendered?window-center=248.009544468547&window-width=431.351843817788' % i) | |
5327 self.assertEqual("L", im2.mode) | |
5328 self.assertEqual(288, im2.size[0]) | |
5329 self.assertEqual(288, im2.size[1]) | |
5330 self.assertTrue(ImageChops.difference(im, im2).getbbox() is None) | |
5331 | |
5332 im = GetImage(_REMOTE, '/instances/%s/rendered?width=512&smooth=0' % i) | |
5333 self.assertEqual("L", im.mode) | |
5334 self.assertEqual(512, im.size[0]) | |
5335 self.assertEqual(512, im.size[1]) | |
5336 | |
5337 im = GetImage(_REMOTE, '/instances/%s/rendered?width=10&smooth=0' % i) | |
5338 self.assertEqual("L", im.mode) | |
5339 self.assertEqual(10, im.size[0]) | |
5340 self.assertEqual(10, im.size[1]) | |
5341 | |
5342 im = GetImage(_REMOTE, '/instances/%s/rendered?width=10&smooth=1' % i) | |
5343 self.assertEqual("L", im.mode) | |
5344 self.assertEqual(10, im.size[0]) | |
5345 self.assertEqual(10, im.size[1]) | |
5346 | |
5347 im = GetImage(_REMOTE, '/instances/%s/rendered?width=1&window-center=-1000' % i) | |
5348 self.assertEqual("L", im.mode) | |
5349 self.assertEqual(1, im.size[0]) | |
5350 self.assertEqual(1, im.size[1]) | |
5351 self.assertEqual(255, im.getpixel((0, 0))) | |
5352 | |
5353 im = GetImage(_REMOTE, '/instances/%s/rendered?width=1&window-center=1000' % i) | |
5354 self.assertEqual("L", im.mode) | |
5355 self.assertEqual(1, im.size[0]) | |
5356 self.assertEqual(1, im.size[1]) | |
5357 self.assertEqual(0, im.getpixel((0, 0))) | |
5358 | |
5359 | |
5360 # Test monochrome 1 | |
5361 i = UploadInstance(_REMOTE, 'Issue44/Monochrome1.dcm')['ID'] | |
5362 im = GetImage(_REMOTE, '/instances/%s/rendered' % i) | |
5363 self.assertEqual("L", im.mode) | |
5364 self.assertEqual(2010, im.size[0]) | |
5365 self.assertEqual(2446, im.size[1]) | |
5366 self.assertEqual(0, im.getpixel((0, 0))) | |
5367 im = GetImage(_REMOTE, '/instances/%s/rendered?width=20' % i) | |
5368 self.assertEqual("L", im.mode) | |
5369 self.assertEqual(20, im.size[0]) | |
5370 self.assertEqual(24, im.size[1]) | |
5371 im = GetImage(_REMOTE, '/instances/%s/rendered?height=24' % i) | |
5372 self.assertEqual("L", im.mode) | |
5373 self.assertEqual(20, im.size[0]) | |
5374 self.assertEqual(24, im.size[1]) | |
5375 im = GetImage(_REMOTE, '/instances/%s/rendered?width=10&height=24' % i) | |
5376 self.assertEqual("L", im.mode) | |
5377 self.assertEqual(10, im.size[0]) | |
5378 self.assertEqual(12, im.size[1]) | |
5379 im = GetImage(_REMOTE, '/instances/%s/rendered?width=40&height=24' % i) | |
5380 self.assertEqual("L", im.mode) | |
5381 self.assertEqual(20, im.size[0]) | |
5382 self.assertEqual(24, im.size[1]) | |
268
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5383 |
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5384 |
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5385 def test_bitbucket_issue_154(self): |
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5386 # "Matching against list of UID-s by C-MOVE" |
319 | 5387 # https://bugs.orthanc-server.com/show_bug.cgi?id=154 |
268
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5388 a = UploadInstance(_REMOTE, 'Issue154-d1.dcm') ['ID'] |
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5389 b = UploadInstance(_REMOTE, 'Issue154-d2.dcm') ['ID'] |
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5390 |
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5391 study = '1.2.826.0.1.3680043.8.498.35214236271657363033644818354280454731' |
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5392 series1 = '1.2.826.0.1.3680043.8.498.12243321927795467590791662266352305113' |
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5393 series2 = '1.2.826.0.1.3680043.8.498.43769499931624584079690260699536473555' |
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5394 |
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5395 # C-FIND is working on list of UIDs |
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5396 i = CallFindScu([ '-k', 'QueryRetrieveLevel=SERIES', |
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5397 '-k', 'StudyInstanceUID=%s' % study, |
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5398 '-k', 'SeriesInstanceUID=%s\\%s' % (series1, series2) ]) |
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5399 series = re.findall('\(0020,000e\).*?\[(.*?)\]', i) |
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5400 self.assertEqual(2, len(series)) |
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5401 self.assertTrue(series1 in series) |
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5402 self.assertTrue(series2 in series) |
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5403 |
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5404 # Individual retrieval is working in Orthanc < 1.6.0 |
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5405 self.assertEqual(0, len(DoGet(_LOCAL, '/instances'))) |
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5406 self.assertTrue(MonitorJob(_REMOTE, lambda: CallMoveScu([ |
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5407 '--study', '-k', 'QueryRetrieveLevel=SERIES', |
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5408 '-k', 'StudyInstanceUID=%s' % study, |
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5409 '-k', 'SeriesInstanceUID=%s' % series1, |
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5410 ]))) |
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5411 self.assertTrue(MonitorJob(_REMOTE, lambda: CallMoveScu([ |
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5412 '--study', '-k', 'QueryRetrieveLevel=SERIES', |
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5413 '-k', 'StudyInstanceUID=%s' % study, |
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5414 '-k', 'SeriesInstanceUID=%s' % series2, |
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5415 ]))) |
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5416 self.assertEqual(2, len(DoGet(_LOCAL, '/instances'))) |
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5417 |
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5418 DropOrthanc(_LOCAL) |
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5419 |
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5420 # But list matching is working only in Orthanc >= 1.6.0 |
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5421 self.assertEqual(0, len(DoGet(_LOCAL, '/instances'))) |
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|
5422 self.assertTrue(MonitorJob(_REMOTE, lambda: CallMoveScu([ |
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5423 '--study', '-k', 'QueryRetrieveLevel=SERIES', |
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5424 '-k', 'StudyInstanceUID=%s' % study, |
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5425 '-k', 'SeriesInstanceUID=%s\\%s' % (series1, series2), |
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5426 ]))) |
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5427 self.assertEqual(2, len(DoGet(_LOCAL, '/instances'))) |
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5428 |
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5429 |
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5430 def test_storage_commitment_api(self): |
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5431 # Storage commitment is available since Orthanc 1.6.0 |
280
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5432 |
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5433 def WaitTransaction(uid): |
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5434 while True: |
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5435 s = DoGet(_REMOTE, '/storage-commitment/%s' % uid) |
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5436 if s['Status'] != 'Pending': |
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5437 return s |
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5438 else: |
342
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5439 time.sleep(0.01) |
280
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5440 |
281 | 5441 instance = UploadInstance(_REMOTE, 'DummyCT.dcm') |
279
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5442 sopClassUid = '1.2.840.10008.5.1.4.1.1.4' |
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5443 sopInstanceUid = '1.2.840.113619.2.176.2025.1499492.7040.1171286242.109' |
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5444 |
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5445 # Against self |
281 | 5446 transaction = DoPost(_REMOTE, '/modalities/self/storage-commitment', { |
5447 "DicomInstances" : [ [ sopClassUid, sopInstanceUid ] ], | |
5448 }) ['ID'] | |
279
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5449 self.assertTrue(transaction.startswith('2.25.')) |
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5450 |
280
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5451 result = WaitTransaction(transaction) |
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5452 self.assertEqual('ORTHANC', result['RemoteAET']) |
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5453 self.assertEqual('Success', result['Status']) |
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5454 self.assertEqual(1, len(result['Success'])) |
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5455 self.assertEqual(0, len(result['Failures'])) |
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5456 self.assertEqual(sopClassUid, result['Success'][0]['SOPClassUID']) |
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5457 self.assertEqual(sopInstanceUid, result['Success'][0]['SOPInstanceUID']) |
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5458 |
281 | 5459 tmp = DoPost(_REMOTE, '/modalities/self/storage-commitment', { |
5460 "DicomInstances" : [ | |
5461 { 'SOPClassUID' : sopClassUid, | |
5462 'SOPInstanceUID' : sopInstanceUid }, | |
5463 ], | |
5464 }) | |
5465 self.assertEqual(tmp['Path'], '/storage-commitment/%s' % tmp['ID']) | |
5466 self.assertEqual(result, WaitTransaction(transaction)) | |
5467 | |
5468 tmp = DoPost(_REMOTE, '/modalities/self/storage-commitment', { | |
5469 "Resources" : [ | |
5470 instance['ID'], | |
5471 instance['ParentSeries'], | |
5472 instance['ParentStudy'], | |
5473 instance['ParentPatient'], | |
5474 ] | |
5475 }) | |
280
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5476 self.assertEqual(tmp['Path'], '/storage-commitment/%s' % tmp['ID']) |
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|
5477 self.assertEqual(result, WaitTransaction(transaction)) |
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|
5478 |
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5479 |
281 | 5480 transaction = DoPost(_REMOTE, '/modalities/self/storage-commitment', { |
5481 "DicomInstances" : [ | |
5482 [ 'nope', 'nope2' ], | |
5483 [ sopClassUid, sopInstanceUid ], | |
5484 ], | |
5485 }) ['ID'] | |
279
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5486 self.assertTrue(transaction.startswith('2.25.')) |
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|
5487 |
280
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|
5488 result = WaitTransaction(transaction) |
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|
5489 self.assertEqual('ORTHANC', result['RemoteAET']) |
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|
5490 self.assertEqual('Failure', result['Status']) |
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5491 self.assertEqual(1, len(result['Success'])) |
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|
5492 self.assertEqual(1, len(result['Failures'])) |
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|
5493 self.assertEqual(sopClassUid, result['Success'][0]['SOPClassUID']) |
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|
5494 self.assertEqual(sopInstanceUid, result['Success'][0]['SOPInstanceUID']) |
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|
5495 self.assertEqual('nope', result['Failures'][0]['SOPClassUID']) |
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5496 self.assertEqual('nope2', result['Failures'][0]['SOPInstanceUID']) |
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|
5497 self.assertEqual(274, result['Failures'][0]['FailureReason']) |
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|
5498 |
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|
5499 # Cannot remove items from a failed storage commitment transaction |
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|
5500 self.assertRaises(Exception, lambda: |
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|
5501 DoPost(_REMOTE, '/storage-commitment/%s/remove' % transaction)) |
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|
5502 |
279
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|
5503 |
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|
5504 # Against Orthanc 0.8.6, that does not support storage commitment |
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diff
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|
5505 self.assertRaises(Exception, lambda: |
281 | 5506 DoPost(_REMOTE, '/modalities/orthanctest/storage-commitment', { |
5507 "DicomInstances" : [ | |
5508 [ sopClassUid, sopInstanceUid ], | |
5509 ] | |
5510 })) | |
279
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5511 |
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|
5512 |
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|
5513 |
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|
5514 def test_storage_commitment_store(self): |
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5515 # Storage commitment is available since Orthanc 1.6.0 |
280
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|
5516 |
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changeset
|
5517 def WaitTransaction(uid): |
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5518 while True: |
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|
5519 s = DoGet(_REMOTE, '/storage-commitment/%s' % uid) |
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|
5520 if s['Status'] != 'Pending': |
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|
5521 return s |
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|
5522 else: |
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|
5523 time.sleep(0.01) |
280
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|
5524 |
279
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5525 i = UploadInstance(_REMOTE, 'DummyCT.dcm')['ID'] |
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5526 self.assertEqual(1, len(DoGet(_REMOTE, '/instances'))) |
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5527 self.assertEqual(0, len(DoGet(_LOCAL, '/instances'))) |
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|
5528 |
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5529 # The Orthanc 0.8.6 from "_LOCAL" does not support storage commitment |
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5530 self.assertRaises(Exception, lambda: DoPost(_REMOTE, '/modalities/orthanctest/store', { |
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5531 'Resources' : [ i ], |
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5532 'StorageCommitment' : True, |
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|
5533 })) |
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|
5534 |
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5535 j = DoPost(_REMOTE, '/modalities/orthanctest/store', { |
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5536 'Resources' : [ i ], |
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5537 'StorageCommitment' : False, |
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5538 }) |
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5539 self.assertEqual(1, len(DoGet(_LOCAL, '/instances'))) |
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5540 |
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5541 j = DoPost(_REMOTE, '/modalities/self/store', { |
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5542 'Resources' : [ i ], |
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5543 'StorageCommitment' : True, |
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5544 }) |
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|
5545 |
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5546 transaction = j['StorageCommitmentTransactionUID'] |
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5547 self.assertTrue(transaction.startswith('2.25.')) |
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|
5548 |
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5549 result = WaitTransaction(transaction) |
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5550 self.assertEqual('ORTHANC', result['RemoteAET']) |
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5551 self.assertEqual('Success', result['Status']) |
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|
5552 self.assertEqual(1, len(result['Success'])) |
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5553 self.assertEqual(0, len(result['Failures'])) |
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5554 self.assertEqual('1.2.840.10008.5.1.4.1.1.4', result['Success'][0]['SOPClassUID']) |
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5555 self.assertEqual('1.2.840.113619.2.176.2025.1499492.7040.1171286242.109', |
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|
5556 result['Success'][0]['SOPInstanceUID']) |
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|
5557 |
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|
5558 self.assertEqual(1, len(DoGet(_REMOTE, '/instances'))) |
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5559 DoPost(_REMOTE, '/storage-commitment/%s/remove' % transaction) |
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5560 self.assertEqual(0, len(DoGet(_REMOTE, '/instances'))) |
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5561 |
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5562 |
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diff
changeset
|
5563 def test_store_straight(self): # New in Orthanc 1.6.1 |
281a32ecc5c1
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diff
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|
5564 self.assertEqual(0, len(DoGet(_LOCAL, '/instances'))) |
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test_store_straight
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diff
changeset
|
5565 self.assertEqual(0, len(DoGet(_REMOTE, '/instances'))) |
281a32ecc5c1
test_store_straight
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281
diff
changeset
|
5566 |
281a32ecc5c1
test_store_straight
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281
diff
changeset
|
5567 with open(GetDatabasePath('DummyCT.dcm'), 'rb') as f: |
281a32ecc5c1
test_store_straight
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diff
changeset
|
5568 dicom = f.read() |
281a32ecc5c1
test_store_straight
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281
diff
changeset
|
5569 |
281a32ecc5c1
test_store_straight
Sebastien Jodogne <s.jodogne@gmail.com>
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281
diff
changeset
|
5570 self.assertRaises(Exception, lambda: DoPost( |
281a32ecc5c1
test_store_straight
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281
diff
changeset
|
5571 _REMOTE, '/modalities/orthanctest/store-straight', 'nope', 'nope')) |
281a32ecc5c1
test_store_straight
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281
diff
changeset
|
5572 |
281a32ecc5c1
test_store_straight
Sebastien Jodogne <s.jodogne@gmail.com>
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281
diff
changeset
|
5573 answer = DoPost(_REMOTE, '/modalities/orthanctest/store-straight', dicom, 'nope') |
281a32ecc5c1
test_store_straight
Sebastien Jodogne <s.jodogne@gmail.com>
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281
diff
changeset
|
5574 |
281a32ecc5c1
test_store_straight
Sebastien Jodogne <s.jodogne@gmail.com>
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281
diff
changeset
|
5575 self.assertEqual('1.2.840.10008.5.1.4.1.1.4', |
281a32ecc5c1
test_store_straight
Sebastien Jodogne <s.jodogne@gmail.com>
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281
diff
changeset
|
5576 answer['SOPClassUID']) |
281a32ecc5c1
test_store_straight
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281
diff
changeset
|
5577 self.assertEqual('1.2.840.113619.2.176.2025.1499492.7040.1171286242.109', |
281a32ecc5c1
test_store_straight
Sebastien Jodogne <s.jodogne@gmail.com>
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281
diff
changeset
|
5578 answer['SOPInstanceUID']) |
281a32ecc5c1
test_store_straight
Sebastien Jodogne <s.jodogne@gmail.com>
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281
diff
changeset
|
5579 |
281a32ecc5c1
test_store_straight
Sebastien Jodogne <s.jodogne@gmail.com>
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281
diff
changeset
|
5580 self.assertEqual(1, len(DoGet(_LOCAL, '/instances'))) |
281a32ecc5c1
test_store_straight
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diff
changeset
|
5581 self.assertEqual(0, len(DoGet(_REMOTE, '/instances'))) |
289
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test_storescu_transcoding
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285
diff
changeset
|
5582 |
4a70411ac9ad
test_storescu_transcoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
285
diff
changeset
|
5583 |
4a70411ac9ad
test_storescu_transcoding
Sebastien Jodogne <s.jodogne@gmail.com>
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285
diff
changeset
|
5584 def test_storescu_transcoding(self): # New in Orthanc 1.7.0 |
4a70411ac9ad
test_storescu_transcoding
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diff
changeset
|
5585 # Add a RLE-encoded DICOM file |
4a70411ac9ad
test_storescu_transcoding
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diff
changeset
|
5586 i = UploadInstance(_REMOTE, 'TransferSyntaxes/1.2.840.10008.1.2.5.dcm')['ID'] |
4a70411ac9ad
test_storescu_transcoding
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diff
changeset
|
5587 self.assertEqual(0, len(DoGet(_LOCAL, '/instances'))) |
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test_storescu_transcoding
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diff
changeset
|
5588 self.assertEqual(1, len(DoGet(_REMOTE, '/instances'))) |
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test_storescu_transcoding
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diff
changeset
|
5589 rleSize = len(DoGet(_REMOTE, '/instances/%s/file' % i)) |
4a70411ac9ad
test_storescu_transcoding
Sebastien Jodogne <s.jodogne@gmail.com>
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285
diff
changeset
|
5590 |
4a70411ac9ad
test_storescu_transcoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
285
diff
changeset
|
5591 # Export the instance, with transcoding: "_REMOTE" is the |
4a70411ac9ad
test_storescu_transcoding
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diff
changeset
|
5592 # Orthanc server being tested |
4a70411ac9ad
test_storescu_transcoding
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285
diff
changeset
|
5593 try: |
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test_storescu_transcoding
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285
diff
changeset
|
5594 DoDelete(_REMOTE, '/modalities/toto') |
4a70411ac9ad
test_storescu_transcoding
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285
diff
changeset
|
5595 except: |
4a70411ac9ad
test_storescu_transcoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
285
diff
changeset
|
5596 pass |
4a70411ac9ad
test_storescu_transcoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
285
diff
changeset
|
5597 |
4a70411ac9ad
test_storescu_transcoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
285
diff
changeset
|
5598 params = DoGet(_REMOTE, '/modalities?expand') ['orthanctest'] |
4a70411ac9ad
test_storescu_transcoding
Sebastien Jodogne <s.jodogne@gmail.com>
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285
diff
changeset
|
5599 DoPut(_REMOTE, '/modalities/toto', params) |
4a70411ac9ad
test_storescu_transcoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
285
diff
changeset
|
5600 DoPost(_REMOTE, '/modalities/toto/store', str(i), 'text/plain') |
4a70411ac9ad
test_storescu_transcoding
Sebastien Jodogne <s.jodogne@gmail.com>
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285
diff
changeset
|
5601 j = DoGet(_LOCAL, '/instances') |
4a70411ac9ad
test_storescu_transcoding
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285
diff
changeset
|
5602 self.assertEqual(1, len(j)) |
4a70411ac9ad
test_storescu_transcoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
285
diff
changeset
|
5603 uncompressedSize = len(DoGet(_LOCAL, '/instances/%s/file' % j[0])) |
4a70411ac9ad
test_storescu_transcoding
Sebastien Jodogne <s.jodogne@gmail.com>
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285
diff
changeset
|
5604 self.assertTrue(uncompressedSize > rleSize / 2) |
4a70411ac9ad
test_storescu_transcoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
285
diff
changeset
|
5605 |
4a70411ac9ad
test_storescu_transcoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
285
diff
changeset
|
5606 # Export, with transcoding disabled => this fails |
4a70411ac9ad
test_storescu_transcoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
285
diff
changeset
|
5607 params['AllowTranscoding'] = False |
4a70411ac9ad
test_storescu_transcoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
285
diff
changeset
|
5608 DoPut(_REMOTE, '/modalities/toto', params) |
4a70411ac9ad
test_storescu_transcoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
285
diff
changeset
|
5609 self.assertRaises(Exception, lambda: DoPost(_REMOTE, '/modalities/toto/store', str(i), 'text/plain')) |
290
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test_bitbucket_issue_169
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
289
diff
changeset
|
5610 |
b5333f87065b
test_bitbucket_issue_169
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
289
diff
changeset
|
5611 |
b5333f87065b
test_bitbucket_issue_169
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
289
diff
changeset
|
5612 def test_bitbucket_issue_169(self): |
b5333f87065b
test_bitbucket_issue_169
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parents:
289
diff
changeset
|
5613 with open(GetDatabasePath('Issue169.dcm.bz2'), 'rb') as f: |
b5333f87065b
test_bitbucket_issue_169
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
289
diff
changeset
|
5614 dicom = bz2.decompress(f.read()) |
b5333f87065b
test_bitbucket_issue_169
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
289
diff
changeset
|
5615 |
b5333f87065b
test_bitbucket_issue_169
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
289
diff
changeset
|
5616 self.assertEqual('1.2.840.10008.1.2.1', GetTransferSyntax(dicom)) |
b5333f87065b
test_bitbucket_issue_169
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
289
diff
changeset
|
5617 |
b5333f87065b
test_bitbucket_issue_169
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
289
diff
changeset
|
5618 self.assertEqual(44350560, len(dicom)) |
b5333f87065b
test_bitbucket_issue_169
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
289
diff
changeset
|
5619 i = DoPost(_REMOTE, '/instances', dicom, 'application/dicom') ['ID'] |
b5333f87065b
test_bitbucket_issue_169
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
289
diff
changeset
|
5620 |
b5333f87065b
test_bitbucket_issue_169
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
289
diff
changeset
|
5621 tags = DoGet(_REMOTE, '/instances/%s/tags' % i) |
b5333f87065b
test_bitbucket_issue_169
Sebastien Jodogne <s.jodogne@gmail.com>
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289
diff
changeset
|
5622 self.assertEqual('NORMAL', tags['1337,1001']['Value']) |
b5333f87065b
test_bitbucket_issue_169
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
289
diff
changeset
|
5623 |
b5333f87065b
test_bitbucket_issue_169
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
289
diff
changeset
|
5624 self.assertEqual(0, len(DoGet(_LOCAL, '/instances'))) |
b5333f87065b
test_bitbucket_issue_169
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
289
diff
changeset
|
5625 DoPost(_REMOTE, '/modalities/orthanctest/store', str(i), 'text/plain') |
b5333f87065b
test_bitbucket_issue_169
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
289
diff
changeset
|
5626 j = DoGet(_LOCAL, '/instances') |
b5333f87065b
test_bitbucket_issue_169
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
289
diff
changeset
|
5627 self.assertEqual(1, len(j)) |
b5333f87065b
test_bitbucket_issue_169
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
289
diff
changeset
|
5628 |
b5333f87065b
test_bitbucket_issue_169
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
289
diff
changeset
|
5629 # In Orthanc <= 1.6.1, transfer syntax changed from "Explicit |
b5333f87065b
test_bitbucket_issue_169
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
289
diff
changeset
|
5630 # VR Little Endian" (1.2.840.10008.1.2.1) to "Implicit VR |
b5333f87065b
test_bitbucket_issue_169
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
289
diff
changeset
|
5631 # Little Endian" (1.2.840.10008.1.2) |
291
cfa785074c64
test_modify_transcode
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
290
diff
changeset
|
5632 self.assertEqual('1.2.840.10008.1.2.1', GetTransferSyntax( |
cfa785074c64
test_modify_transcode
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
290
diff
changeset
|
5633 DoGet(_LOCAL, '/instances/%s/file' % j[0]))) |
290
b5333f87065b
test_bitbucket_issue_169
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
289
diff
changeset
|
5634 |
b5333f87065b
test_bitbucket_issue_169
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
289
diff
changeset
|
5635 # In Orthanc <= 1.6.1, the value of the private tags was lost |
b5333f87065b
test_bitbucket_issue_169
Sebastien Jodogne <s.jodogne@gmail.com>
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289
diff
changeset
|
5636 # because of this transcoding |
b5333f87065b
test_bitbucket_issue_169
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
289
diff
changeset
|
5637 tags = DoGet(_LOCAL, '/instances/%s/tags' % j[0]) |
b5333f87065b
test_bitbucket_issue_169
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
289
diff
changeset
|
5638 self.assertEqual('NORMAL', tags['1337,1001']['Value']) |
291
cfa785074c64
test_modify_transcode
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
290
diff
changeset
|
5639 |
cfa785074c64
test_modify_transcode
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
290
diff
changeset
|
5640 |
302
22b6dd0f8c84
test_modify_transcode_study
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
301
diff
changeset
|
5641 def test_modify_transcode_instance(self): |
291
cfa785074c64
test_modify_transcode
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
290
diff
changeset
|
5642 i = UploadInstance(_REMOTE, 'KarstenHilbertRF.dcm')['ID'] |
cfa785074c64
test_modify_transcode
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
290
diff
changeset
|
5643 self.assertEqual('1.2.840.10008.1.2.1', GetTransferSyntax( |
cfa785074c64
test_modify_transcode
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
290
diff
changeset
|
5644 DoGet(_REMOTE, '/instances/%s/file' % i))) |
cfa785074c64
test_modify_transcode
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
290
diff
changeset
|
5645 |
299
c2144cf4bd83
HasGdcmPlugin() test
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
293
diff
changeset
|
5646 a = ExtractDicomTags(DoGet(_REMOTE, '/instances/%s/file' % i), [ 'SOPInstanceUID' ]) [0] |
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HasGdcmPlugin() test
Sebastien Jodogne <s.jodogne@gmail.com>
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diff
changeset
|
5647 self.assertTrue(len(a) > 20) |
c2144cf4bd83
HasGdcmPlugin() test
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diff
changeset
|
5648 |
c2144cf4bd83
HasGdcmPlugin() test
Sebastien Jodogne <s.jodogne@gmail.com>
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293
diff
changeset
|
5649 SYNTAXES = [ |
c2144cf4bd83
HasGdcmPlugin() test
Sebastien Jodogne <s.jodogne@gmail.com>
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293
diff
changeset
|
5650 '1.2.840.10008.1.2', |
c2144cf4bd83
HasGdcmPlugin() test
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
293
diff
changeset
|
5651 '1.2.840.10008.1.2.1', |
300
d6c2eb5a2603
disabling test on Deflated Explicit VR Little Endian
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
299
diff
changeset
|
5652 #'1.2.840.10008.1.2.1.99', # Deflated Explicit VR Little Endian (cannot be decoded in debug mode if Orthanc is statically linked against DCMTK 3.6.5) |
299
c2144cf4bd83
HasGdcmPlugin() test
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
293
diff
changeset
|
5653 '1.2.840.10008.1.2.2', |
c2144cf4bd83
HasGdcmPlugin() test
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
293
diff
changeset
|
5654 '1.2.840.10008.1.2.4.50', |
c2144cf4bd83
HasGdcmPlugin() test
Sebastien Jodogne <s.jodogne@gmail.com>
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293
diff
changeset
|
5655 '1.2.840.10008.1.2.4.51', |
c2144cf4bd83
HasGdcmPlugin() test
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
293
diff
changeset
|
5656 '1.2.840.10008.1.2.4.57', |
c2144cf4bd83
HasGdcmPlugin() test
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
293
diff
changeset
|
5657 '1.2.840.10008.1.2.4.70', |
c2144cf4bd83
HasGdcmPlugin() test
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
293
diff
changeset
|
5658 ] |
c2144cf4bd83
HasGdcmPlugin() test
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
293
diff
changeset
|
5659 |
304 | 5660 if HasGdcmPlugin(_REMOTE): |
299
c2144cf4bd83
HasGdcmPlugin() test
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
293
diff
changeset
|
5661 SYNTAXES = SYNTAXES + [ |
c2144cf4bd83
HasGdcmPlugin() test
Sebastien Jodogne <s.jodogne@gmail.com>
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diff
changeset
|
5662 '1.2.840.10008.1.2.4.80', # This makes DCMTK 3.6.2 crash |
c2144cf4bd83
HasGdcmPlugin() test
Sebastien Jodogne <s.jodogne@gmail.com>
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diff
changeset
|
5663 '1.2.840.10008.1.2.4.81', # This makes DCMTK 3.6.2 crash |
c2144cf4bd83
HasGdcmPlugin() test
Sebastien Jodogne <s.jodogne@gmail.com>
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293
diff
changeset
|
5664 '1.2.840.10008.1.2.4.90', # JPEG2k, unavailable without GDCM |
c2144cf4bd83
HasGdcmPlugin() test
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diff
changeset
|
5665 '1.2.840.10008.1.2.4.91', # JPEG2k, unavailable without GDCM |
c2144cf4bd83
HasGdcmPlugin() test
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293
diff
changeset
|
5666 ] |
c2144cf4bd83
HasGdcmPlugin() test
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
293
diff
changeset
|
5667 |
c2144cf4bd83
HasGdcmPlugin() test
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
293
diff
changeset
|
5668 for syntax in SYNTAXES: |
291
cfa785074c64
test_modify_transcode
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parents:
290
diff
changeset
|
5669 transcoded = DoPost(_REMOTE, '/instances/%s/modify' % i, { |
cfa785074c64
test_modify_transcode
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290
diff
changeset
|
5670 'Transcode' : syntax, |
299
c2144cf4bd83
HasGdcmPlugin() test
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
293
diff
changeset
|
5671 'Keep' : [ 'SOPInstanceUID' ], |
c2144cf4bd83
HasGdcmPlugin() test
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
293
diff
changeset
|
5672 'Force' : True, |
291
cfa785074c64
test_modify_transcode
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
290
diff
changeset
|
5673 }) |
cfa785074c64
test_modify_transcode
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
290
diff
changeset
|
5674 |
cfa785074c64
test_modify_transcode
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
290
diff
changeset
|
5675 self.assertEqual(syntax, GetTransferSyntax(transcoded)) |
292
e1827a4f5d3b
test_archive_transcode
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
291
diff
changeset
|
5676 |
299
c2144cf4bd83
HasGdcmPlugin() test
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
293
diff
changeset
|
5677 b = ExtractDicomTags(transcoded, [ 'SOPInstanceUID' ]) [0] |
c2144cf4bd83
HasGdcmPlugin() test
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
293
diff
changeset
|
5678 self.assertTrue(len(b) > 20) |
c2144cf4bd83
HasGdcmPlugin() test
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
293
diff
changeset
|
5679 if syntax in [ '1.2.840.10008.1.2.4.50', |
c2144cf4bd83
HasGdcmPlugin() test
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
293
diff
changeset
|
5680 '1.2.840.10008.1.2.4.51', |
c2144cf4bd83
HasGdcmPlugin() test
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
293
diff
changeset
|
5681 '1.2.840.10008.1.2.4.81', |
c2144cf4bd83
HasGdcmPlugin() test
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
293
diff
changeset
|
5682 '1.2.840.10008.1.2.4.91' ]: |
c2144cf4bd83
HasGdcmPlugin() test
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
293
diff
changeset
|
5683 # Lossy transcoding: The SOP instance UID must have changed |
c2144cf4bd83
HasGdcmPlugin() test
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
293
diff
changeset
|
5684 self.assertNotEqual(a, b) |
c2144cf4bd83
HasGdcmPlugin() test
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
293
diff
changeset
|
5685 else: |
c2144cf4bd83
HasGdcmPlugin() test
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
293
diff
changeset
|
5686 self.assertEqual(a, b) |
292
e1827a4f5d3b
test_archive_transcode
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
291
diff
changeset
|
5687 |
e1827a4f5d3b
test_archive_transcode
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
291
diff
changeset
|
5688 def test_archive_transcode(self): |
e1827a4f5d3b
test_archive_transcode
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
291
diff
changeset
|
5689 info = UploadInstance(_REMOTE, 'KarstenHilbertRF.dcm') |
e1827a4f5d3b
test_archive_transcode
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
291
diff
changeset
|
5690 |
293
032722c3e919
extended test_archive_transcode
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
292
diff
changeset
|
5691 # GET on "/media" |
292
e1827a4f5d3b
test_archive_transcode
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
291
diff
changeset
|
5692 z = GetArchive(_REMOTE, '/patients/%s/media' % info['ParentPatient']) |
e1827a4f5d3b
test_archive_transcode
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
291
diff
changeset
|
5693 self.assertEqual(2, len(z.namelist())) |
e1827a4f5d3b
test_archive_transcode
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
291
diff
changeset
|
5694 self.assertEqual('1.2.840.10008.1.2.1', GetTransferSyntax(z.read('IMAGES/IM0'))) |
e1827a4f5d3b
test_archive_transcode
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
291
diff
changeset
|
5695 |
e1827a4f5d3b
test_archive_transcode
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
291
diff
changeset
|
5696 self.assertRaises(Exception, lambda: DoGet(_REMOTE, '/patients/%s/media?transcode=nope' % info['ParentPatient'])) |
e1827a4f5d3b
test_archive_transcode
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
291
diff
changeset
|
5697 |
e1827a4f5d3b
test_archive_transcode
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
291
diff
changeset
|
5698 z = GetArchive(_REMOTE, '/patients/%s/media?transcode=1.2.840.10008.1.2.4.50' % info['ParentPatient']) |
e1827a4f5d3b
test_archive_transcode
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
291
diff
changeset
|
5699 self.assertEqual('1.2.840.10008.1.2.4.50', GetTransferSyntax(z.read('IMAGES/IM0'))) |
e1827a4f5d3b
test_archive_transcode
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
291
diff
changeset
|
5700 |
e1827a4f5d3b
test_archive_transcode
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
291
diff
changeset
|
5701 z = GetArchive(_REMOTE, '/studies/%s/media?transcode=1.2.840.10008.1.2.4.51' % info['ParentStudy']) |
e1827a4f5d3b
test_archive_transcode
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
291
diff
changeset
|
5702 self.assertEqual('1.2.840.10008.1.2.4.51', GetTransferSyntax(z.read('IMAGES/IM0'))) |
e1827a4f5d3b
test_archive_transcode
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
291
diff
changeset
|
5703 |
e1827a4f5d3b
test_archive_transcode
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
291
diff
changeset
|
5704 z = GetArchive(_REMOTE, '/series/%s/media?transcode=1.2.840.10008.1.2.4.57' % info['ParentSeries']) |
e1827a4f5d3b
test_archive_transcode
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
291
diff
changeset
|
5705 self.assertEqual('1.2.840.10008.1.2.4.57', GetTransferSyntax(z.read('IMAGES/IM0'))) |
e1827a4f5d3b
test_archive_transcode
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
291
diff
changeset
|
5706 |
293
032722c3e919
extended test_archive_transcode
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
292
diff
changeset
|
5707 |
032722c3e919
extended test_archive_transcode
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
292
diff
changeset
|
5708 # POST on "/media" |
032722c3e919
extended test_archive_transcode
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
292
diff
changeset
|
5709 self.assertRaises(Exception, lambda: PostArchive( |
032722c3e919
extended test_archive_transcode
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
292
diff
changeset
|
5710 _REMOTE, '/patients/%s/media' % info['ParentPatient'], { 'Transcode' : 'nope' })) |
032722c3e919
extended test_archive_transcode
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
292
diff
changeset
|
5711 |
032722c3e919
extended test_archive_transcode
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
292
diff
changeset
|
5712 z = PostArchive(_REMOTE, '/patients/%s/media' % info['ParentPatient'], { |
032722c3e919
extended test_archive_transcode
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
292
diff
changeset
|
5713 'Transcode' : '1.2.840.10008.1.2.4.50', |
032722c3e919
extended test_archive_transcode
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
292
diff
changeset
|
5714 }) |
032722c3e919
extended test_archive_transcode
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
292
diff
changeset
|
5715 self.assertEqual('1.2.840.10008.1.2.4.50', GetTransferSyntax(z.read('IMAGES/IM0'))) |
032722c3e919
extended test_archive_transcode
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
292
diff
changeset
|
5716 |
032722c3e919
extended test_archive_transcode
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
292
diff
changeset
|
5717 z = PostArchive(_REMOTE, '/studies/%s/media' % info['ParentStudy'], { |
032722c3e919
extended test_archive_transcode
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
292
diff
changeset
|
5718 'Transcode' : '1.2.840.10008.1.2.4.51', |
032722c3e919
extended test_archive_transcode
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
292
diff
changeset
|
5719 }) |
032722c3e919
extended test_archive_transcode
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
292
diff
changeset
|
5720 self.assertEqual('1.2.840.10008.1.2.4.51', GetTransferSyntax(z.read('IMAGES/IM0'))) |
032722c3e919
extended test_archive_transcode
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
292
diff
changeset
|
5721 |
032722c3e919
extended test_archive_transcode
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
292
diff
changeset
|
5722 z = PostArchive(_REMOTE, '/series/%s/media' % info['ParentSeries'], { |
032722c3e919
extended test_archive_transcode
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
292
diff
changeset
|
5723 'Transcode' : '1.2.840.10008.1.2.4.57', |
032722c3e919
extended test_archive_transcode
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
292
diff
changeset
|
5724 }) |
032722c3e919
extended test_archive_transcode
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
292
diff
changeset
|
5725 self.assertEqual('1.2.840.10008.1.2.4.57', GetTransferSyntax(z.read('IMAGES/IM0'))) |
032722c3e919
extended test_archive_transcode
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
292
diff
changeset
|
5726 |
032722c3e919
extended test_archive_transcode
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
292
diff
changeset
|
5727 |
032722c3e919
extended test_archive_transcode
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
292
diff
changeset
|
5728 # GET on "/archive" |
292
e1827a4f5d3b
test_archive_transcode
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
291
diff
changeset
|
5729 z = GetArchive(_REMOTE, '/patients/%s/archive' % info['ParentPatient']) |
e1827a4f5d3b
test_archive_transcode
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
291
diff
changeset
|
5730 self.assertEqual(1, len(z.namelist())) |
e1827a4f5d3b
test_archive_transcode
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
291
diff
changeset
|
5731 self.assertEqual('1.2.840.10008.1.2.1', GetTransferSyntax(z.read(z.namelist()[0]))) |
e1827a4f5d3b
test_archive_transcode
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
291
diff
changeset
|
5732 |
e1827a4f5d3b
test_archive_transcode
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
291
diff
changeset
|
5733 self.assertRaises(Exception, lambda: DoGet(_REMOTE, '/patients/%s/archive?transcode=nope' % info['ParentPatient'])) |
e1827a4f5d3b
test_archive_transcode
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
291
diff
changeset
|
5734 |
e1827a4f5d3b
test_archive_transcode
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
291
diff
changeset
|
5735 z = GetArchive(_REMOTE, '/patients/%s/archive?transcode=1.2.840.10008.1.2' % info['ParentPatient']) |
e1827a4f5d3b
test_archive_transcode
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
291
diff
changeset
|
5736 self.assertEqual('1.2.840.10008.1.2', GetTransferSyntax(z.read(z.namelist()[0]))) |
e1827a4f5d3b
test_archive_transcode
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
291
diff
changeset
|
5737 |
e1827a4f5d3b
test_archive_transcode
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
291
diff
changeset
|
5738 z = GetArchive(_REMOTE, '/studies/%s/archive?transcode=1.2.840.10008.1.2.2' % info['ParentStudy']) |
e1827a4f5d3b
test_archive_transcode
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
291
diff
changeset
|
5739 self.assertEqual('1.2.840.10008.1.2.2', GetTransferSyntax(z.read(z.namelist()[0]))) |
e1827a4f5d3b
test_archive_transcode
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
291
diff
changeset
|
5740 |
e1827a4f5d3b
test_archive_transcode
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
291
diff
changeset
|
5741 z = GetArchive(_REMOTE, '/series/%s/archive?transcode=1.2.840.10008.1.2.4.70' % info['ParentSeries']) |
e1827a4f5d3b
test_archive_transcode
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
291
diff
changeset
|
5742 self.assertEqual('1.2.840.10008.1.2.4.70', GetTransferSyntax(z.read(z.namelist()[0]))) |
293
032722c3e919
extended test_archive_transcode
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
292
diff
changeset
|
5743 |
032722c3e919
extended test_archive_transcode
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
292
diff
changeset
|
5744 |
032722c3e919
extended test_archive_transcode
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
292
diff
changeset
|
5745 # POST on "/archive" |
032722c3e919
extended test_archive_transcode
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
292
diff
changeset
|
5746 self.assertRaises(Exception, lambda: PostArchive( |
032722c3e919
extended test_archive_transcode
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
292
diff
changeset
|
5747 _REMOTE, '/patients/%s/archive' % info['ParentPatient'], { 'Transcode' : 'nope' })) |
032722c3e919
extended test_archive_transcode
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
292
diff
changeset
|
5748 |
032722c3e919
extended test_archive_transcode
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
292
diff
changeset
|
5749 z = PostArchive(_REMOTE, '/patients/%s/archive' % info['ParentPatient'], { |
032722c3e919
extended test_archive_transcode
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
292
diff
changeset
|
5750 'Transcode' : '1.2.840.10008.1.2.4.50', |
032722c3e919
extended test_archive_transcode
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
292
diff
changeset
|
5751 }) |
032722c3e919
extended test_archive_transcode
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
292
diff
changeset
|
5752 self.assertEqual('1.2.840.10008.1.2.4.50', GetTransferSyntax(z.read(z.namelist()[0]))) |
032722c3e919
extended test_archive_transcode
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
292
diff
changeset
|
5753 |
032722c3e919
extended test_archive_transcode
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
292
diff
changeset
|
5754 z = PostArchive(_REMOTE, '/studies/%s/archive' % info['ParentStudy'], { |
032722c3e919
extended test_archive_transcode
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
292
diff
changeset
|
5755 'Transcode' : '1.2.840.10008.1.2.4.51', |
032722c3e919
extended test_archive_transcode
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
292
diff
changeset
|
5756 }) |
032722c3e919
extended test_archive_transcode
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
292
diff
changeset
|
5757 self.assertEqual('1.2.840.10008.1.2.4.51', GetTransferSyntax(z.read(z.namelist()[0]))) |
032722c3e919
extended test_archive_transcode
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
292
diff
changeset
|
5758 |
032722c3e919
extended test_archive_transcode
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
292
diff
changeset
|
5759 z = PostArchive(_REMOTE, '/series/%s/archive' % info['ParentSeries'], { |
032722c3e919
extended test_archive_transcode
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
292
diff
changeset
|
5760 'Transcode' : '1.2.840.10008.1.2.4.57', |
032722c3e919
extended test_archive_transcode
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
292
diff
changeset
|
5761 }) |
032722c3e919
extended test_archive_transcode
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
292
diff
changeset
|
5762 self.assertEqual('1.2.840.10008.1.2.4.57', GetTransferSyntax(z.read(z.namelist()[0]))) |
292
e1827a4f5d3b
test_archive_transcode
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
291
diff
changeset
|
5763 |
293
032722c3e919
extended test_archive_transcode
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
292
diff
changeset
|
5764 |
032722c3e919
extended test_archive_transcode
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
292
diff
changeset
|
5765 # "/tools/create-*" |
032722c3e919
extended test_archive_transcode
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
292
diff
changeset
|
5766 z = PostArchive(_REMOTE, '/tools/create-archive', { |
032722c3e919
extended test_archive_transcode
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
292
diff
changeset
|
5767 'Resources' : [ info['ParentStudy'] ], |
032722c3e919
extended test_archive_transcode
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
292
diff
changeset
|
5768 'Transcode' : '1.2.840.10008.1.2.4.50', |
032722c3e919
extended test_archive_transcode
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
292
diff
changeset
|
5769 }) |
032722c3e919
extended test_archive_transcode
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
292
diff
changeset
|
5770 self.assertEqual(1, len(z.namelist())) |
032722c3e919
extended test_archive_transcode
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
292
diff
changeset
|
5771 self.assertEqual('1.2.840.10008.1.2.4.50', GetTransferSyntax(z.read(z.namelist()[0]))) |
032722c3e919
extended test_archive_transcode
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
292
diff
changeset
|
5772 |
032722c3e919
extended test_archive_transcode
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
292
diff
changeset
|
5773 z = PostArchive(_REMOTE, '/tools/create-media', { |
032722c3e919
extended test_archive_transcode
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
292
diff
changeset
|
5774 'Resources' : [ info['ParentStudy'] ], |
032722c3e919
extended test_archive_transcode
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
292
diff
changeset
|
5775 'Transcode' : '1.2.840.10008.1.2.4.51', |
032722c3e919
extended test_archive_transcode
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
292
diff
changeset
|
5776 }) |
032722c3e919
extended test_archive_transcode
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
292
diff
changeset
|
5777 self.assertEqual(2, len(z.namelist())) |
032722c3e919
extended test_archive_transcode
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
292
diff
changeset
|
5778 self.assertEqual('1.2.840.10008.1.2.4.51', GetTransferSyntax(z.read('IMAGES/IM0'))) |
032722c3e919
extended test_archive_transcode
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
292
diff
changeset
|
5779 |
032722c3e919
extended test_archive_transcode
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
292
diff
changeset
|
5780 z = PostArchive(_REMOTE, '/tools/create-media-extended', { |
032722c3e919
extended test_archive_transcode
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
292
diff
changeset
|
5781 'Resources' : [ info['ParentStudy'] ], |
032722c3e919
extended test_archive_transcode
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
292
diff
changeset
|
5782 'Transcode' : '1.2.840.10008.1.2.4.57', |
032722c3e919
extended test_archive_transcode
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
292
diff
changeset
|
5783 }) |
032722c3e919
extended test_archive_transcode
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
292
diff
changeset
|
5784 self.assertEqual(2, len(z.namelist())) |
032722c3e919
extended test_archive_transcode
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
292
diff
changeset
|
5785 self.assertEqual('1.2.840.10008.1.2.4.57', GetTransferSyntax(z.read('IMAGES/IM0'))) |
032722c3e919
extended test_archive_transcode
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
292
diff
changeset
|
5786 |
308 | 5787 |
301
6652d5720a45
test_modify_keep_source
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
300
diff
changeset
|
5788 def test_modify_keep_source(self): |
6652d5720a45
test_modify_keep_source
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
300
diff
changeset
|
5789 # https://groups.google.com/d/msg/orthanc-users/CgU-Wg8vDio/BY5ZWcDEAgAJ |
6652d5720a45
test_modify_keep_source
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
300
diff
changeset
|
5790 i = UploadInstance(_REMOTE, 'DummyCT.dcm') |
6652d5720a45
test_modify_keep_source
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
300
diff
changeset
|
5791 self.assertEqual(1, len(DoGet(_REMOTE, '/studies'))) |
6652d5720a45
test_modify_keep_source
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
300
diff
changeset
|
5792 |
6652d5720a45
test_modify_keep_source
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
300
diff
changeset
|
5793 j = DoPost(_REMOTE, '/studies/%s/modify' % i['ParentStudy'], { |
6652d5720a45
test_modify_keep_source
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
300
diff
changeset
|
5794 'Replace' : { |
6652d5720a45
test_modify_keep_source
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
300
diff
changeset
|
5795 'StationName' : 'TEST', |
6652d5720a45
test_modify_keep_source
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
300
diff
changeset
|
5796 }, |
6652d5720a45
test_modify_keep_source
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
300
diff
changeset
|
5797 'KeepSource' : True, |
6652d5720a45
test_modify_keep_source
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
300
diff
changeset
|
5798 }) |
6652d5720a45
test_modify_keep_source
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
300
diff
changeset
|
5799 |
6652d5720a45
test_modify_keep_source
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
300
diff
changeset
|
5800 s = DoGet(_REMOTE, '/studies') |
6652d5720a45
test_modify_keep_source
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
300
diff
changeset
|
5801 self.assertEqual(2, len(s)) |
6652d5720a45
test_modify_keep_source
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
300
diff
changeset
|
5802 self.assertTrue(i['ParentStudy'] in s) |
6652d5720a45
test_modify_keep_source
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
300
diff
changeset
|
5803 self.assertTrue(j['ID'] in s) |
6652d5720a45
test_modify_keep_source
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
300
diff
changeset
|
5804 |
6652d5720a45
test_modify_keep_source
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
300
diff
changeset
|
5805 DoDelete(_REMOTE, '/studies/%s' % j['ID']) |
6652d5720a45
test_modify_keep_source
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
300
diff
changeset
|
5806 self.assertEqual(1, len(DoGet(_REMOTE, '/studies'))) |
6652d5720a45
test_modify_keep_source
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
300
diff
changeset
|
5807 |
6652d5720a45
test_modify_keep_source
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
300
diff
changeset
|
5808 j = DoPost(_REMOTE, '/studies/%s/modify' % i['ParentStudy'], { |
6652d5720a45
test_modify_keep_source
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
300
diff
changeset
|
5809 'Replace' : { |
6652d5720a45
test_modify_keep_source
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
300
diff
changeset
|
5810 'StationName' : 'TEST', |
6652d5720a45
test_modify_keep_source
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
300
diff
changeset
|
5811 }, |
6652d5720a45
test_modify_keep_source
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
300
diff
changeset
|
5812 'KeepSource' : False, |
6652d5720a45
test_modify_keep_source
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
300
diff
changeset
|
5813 }) |
6652d5720a45
test_modify_keep_source
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
300
diff
changeset
|
5814 |
6652d5720a45
test_modify_keep_source
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
300
diff
changeset
|
5815 s = DoGet(_REMOTE, '/studies') |
6652d5720a45
test_modify_keep_source
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
300
diff
changeset
|
5816 self.assertEqual(1, len(s)) |
6652d5720a45
test_modify_keep_source
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
300
diff
changeset
|
5817 self.assertFalse(i['ParentStudy'] in s) |
6652d5720a45
test_modify_keep_source
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
300
diff
changeset
|
5818 self.assertTrue(j['ID'] in s) |
302
22b6dd0f8c84
test_modify_transcode_study
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
301
diff
changeset
|
5819 |
22b6dd0f8c84
test_modify_transcode_study
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
301
diff
changeset
|
5820 |
22b6dd0f8c84
test_modify_transcode_study
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
301
diff
changeset
|
5821 def test_modify_transcode_study(self): |
22b6dd0f8c84
test_modify_transcode_study
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
301
diff
changeset
|
5822 i = UploadInstance(_REMOTE, 'KarstenHilbertRF.dcm') |
22b6dd0f8c84
test_modify_transcode_study
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
301
diff
changeset
|
5823 self.assertEqual('1.2.840.10008.1.2.1', GetTransferSyntax( |
22b6dd0f8c84
test_modify_transcode_study
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
301
diff
changeset
|
5824 DoGet(_REMOTE, '/instances/%s/file' % i['ID']))) |
22b6dd0f8c84
test_modify_transcode_study
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
301
diff
changeset
|
5825 |
22b6dd0f8c84
test_modify_transcode_study
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
301
diff
changeset
|
5826 self.assertEqual(1, len(DoGet(_REMOTE, '/instances'))) |
22b6dd0f8c84
test_modify_transcode_study
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
301
diff
changeset
|
5827 j = DoPost(_REMOTE, '/studies/%s/modify' % i['ParentStudy'], { |
22b6dd0f8c84
test_modify_transcode_study
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
301
diff
changeset
|
5828 'Transcode' : '1.2.840.10008.1.2.4.50', |
22b6dd0f8c84
test_modify_transcode_study
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
301
diff
changeset
|
5829 'KeepSource' : False |
22b6dd0f8c84
test_modify_transcode_study
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
301
diff
changeset
|
5830 }) |
22b6dd0f8c84
test_modify_transcode_study
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
301
diff
changeset
|
5831 |
22b6dd0f8c84
test_modify_transcode_study
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
301
diff
changeset
|
5832 k = DoGet(_REMOTE, '/instances') |
22b6dd0f8c84
test_modify_transcode_study
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
301
diff
changeset
|
5833 self.assertEqual(1, len(k)) |
22b6dd0f8c84
test_modify_transcode_study
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
301
diff
changeset
|
5834 self.assertEqual(i['ID'], DoGet(_REMOTE, '/instances/%s/metadata?expand' % k[0]) ['ModifiedFrom']) |
22b6dd0f8c84
test_modify_transcode_study
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
301
diff
changeset
|
5835 self.assertEqual('1.2.840.10008.1.2.4.50', GetTransferSyntax( |
22b6dd0f8c84
test_modify_transcode_study
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
301
diff
changeset
|
5836 DoGet(_REMOTE, '/instances/%s/file' % k[0]))) |
22b6dd0f8c84
test_modify_transcode_study
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
301
diff
changeset
|
5837 |
305
ed20ead1a8b6
test_store_peer_transcoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
304
diff
changeset
|
5838 |
ed20ead1a8b6
test_store_peer_transcoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
304
diff
changeset
|
5839 def test_store_peer_transcoding(self): |
ed20ead1a8b6
test_store_peer_transcoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
304
diff
changeset
|
5840 i = UploadInstance(_REMOTE, 'KarstenHilbertRF.dcm')['ID'] |
ed20ead1a8b6
test_store_peer_transcoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
304
diff
changeset
|
5841 |
ed20ead1a8b6
test_store_peer_transcoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
304
diff
changeset
|
5842 SYNTAXES = [ |
ed20ead1a8b6
test_store_peer_transcoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
304
diff
changeset
|
5843 '1.2.840.10008.1.2', |
ed20ead1a8b6
test_store_peer_transcoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
304
diff
changeset
|
5844 '1.2.840.10008.1.2.1', |
ed20ead1a8b6
test_store_peer_transcoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
304
diff
changeset
|
5845 #'1.2.840.10008.1.2.1.99', # Deflated Explicit VR Little Endian (cannot be decoded in debug mode if Orthanc is statically linked against DCMTK 3.6.5) |
ed20ead1a8b6
test_store_peer_transcoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
304
diff
changeset
|
5846 '1.2.840.10008.1.2.2', |
ed20ead1a8b6
test_store_peer_transcoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
304
diff
changeset
|
5847 '1.2.840.10008.1.2.4.50', |
ed20ead1a8b6
test_store_peer_transcoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
304
diff
changeset
|
5848 '1.2.840.10008.1.2.4.51', |
ed20ead1a8b6
test_store_peer_transcoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
304
diff
changeset
|
5849 '1.2.840.10008.1.2.4.57', |
ed20ead1a8b6
test_store_peer_transcoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
304
diff
changeset
|
5850 '1.2.840.10008.1.2.4.70', |
ed20ead1a8b6
test_store_peer_transcoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
304
diff
changeset
|
5851 ] |
ed20ead1a8b6
test_store_peer_transcoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
304
diff
changeset
|
5852 |
ed20ead1a8b6
test_store_peer_transcoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
304
diff
changeset
|
5853 if HasGdcmPlugin(_REMOTE): |
ed20ead1a8b6
test_store_peer_transcoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
304
diff
changeset
|
5854 SYNTAXES = SYNTAXES + [ |
ed20ead1a8b6
test_store_peer_transcoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
304
diff
changeset
|
5855 '1.2.840.10008.1.2.4.80', # This makes DCMTK 3.6.2 crash |
ed20ead1a8b6
test_store_peer_transcoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
304
diff
changeset
|
5856 '1.2.840.10008.1.2.4.81', # This makes DCMTK 3.6.2 crash |
ed20ead1a8b6
test_store_peer_transcoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
304
diff
changeset
|
5857 '1.2.840.10008.1.2.4.90', # JPEG2k, unavailable without GDCM |
ed20ead1a8b6
test_store_peer_transcoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
304
diff
changeset
|
5858 '1.2.840.10008.1.2.4.91', # JPEG2k, unavailable without GDCM |
ed20ead1a8b6
test_store_peer_transcoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
304
diff
changeset
|
5859 ] |
ed20ead1a8b6
test_store_peer_transcoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
304
diff
changeset
|
5860 |
ed20ead1a8b6
test_store_peer_transcoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
304
diff
changeset
|
5861 for syntax in SYNTAXES: |
ed20ead1a8b6
test_store_peer_transcoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
304
diff
changeset
|
5862 body = { |
ed20ead1a8b6
test_store_peer_transcoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
304
diff
changeset
|
5863 'Resources' : [ i ], |
ed20ead1a8b6
test_store_peer_transcoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
304
diff
changeset
|
5864 } |
ed20ead1a8b6
test_store_peer_transcoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
304
diff
changeset
|
5865 |
ed20ead1a8b6
test_store_peer_transcoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
304
diff
changeset
|
5866 if syntax != '1.2.840.10008.1.2.1': |
ed20ead1a8b6
test_store_peer_transcoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
304
diff
changeset
|
5867 body['Transcode'] = syntax |
ed20ead1a8b6
test_store_peer_transcoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
304
diff
changeset
|
5868 |
ed20ead1a8b6
test_store_peer_transcoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
304
diff
changeset
|
5869 self.assertEqual(0, len(DoGet(_LOCAL, '/instances'))) |
ed20ead1a8b6
test_store_peer_transcoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
304
diff
changeset
|
5870 self.assertEqual(1, len(DoGet(_REMOTE, '/instances'))) |
ed20ead1a8b6
test_store_peer_transcoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
304
diff
changeset
|
5871 DoPost(_REMOTE, '/peers/peer/store', body, 'text/plain') |
ed20ead1a8b6
test_store_peer_transcoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
304
diff
changeset
|
5872 self.assertEqual(1, len(DoGet(_LOCAL, '/instances'))) |
ed20ead1a8b6
test_store_peer_transcoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
304
diff
changeset
|
5873 self.assertEqual(1, len(DoGet(_REMOTE, '/instances'))) |
ed20ead1a8b6
test_store_peer_transcoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
304
diff
changeset
|
5874 self.assertEqual(syntax, GetTransferSyntax( |
ed20ead1a8b6
test_store_peer_transcoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
304
diff
changeset
|
5875 DoGet(_LOCAL, '/instances/%s/file' % DoGet(_LOCAL, '/instances') [0]))) |
ed20ead1a8b6
test_store_peer_transcoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
304
diff
changeset
|
5876 |
ed20ead1a8b6
test_store_peer_transcoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
304
diff
changeset
|
5877 DropOrthanc(_LOCAL) |
308 | 5878 |
5879 | |
295 | 5880 def test_getscu(self): |
307 | 5881 def CleanTarget(): |
5882 if os.path.isdir('/tmp/GETSCU'): | |
5883 shutil.rmtree('/tmp/GETSCU') | |
5884 os.makedirs('/tmp/GETSCU') | |
5885 | |
306
da2be3ff2db5
fix getscu binaries
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
296
diff
changeset
|
5886 env = {} |
da2be3ff2db5
fix getscu binaries
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
296
diff
changeset
|
5887 if _DOCKER: |
da2be3ff2db5
fix getscu binaries
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
296
diff
changeset
|
5888 # This is "getscu" from DCMTK 3.6.5 compiled using LSB, |
da2be3ff2db5
fix getscu binaries
Sebastien Jodogne <s.jodogne@gmail.com>
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diff
changeset
|
5889 # and running in a GNU/Linux distribution running DCMTK |
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5890 # 3.6.0. Tell "getscu" where it can find the DICOM dictionary. |
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5891 env['DCMDICTPATH'] = '/usr/share/libdcmtk2/dicom.dic' |
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5892 |
295 | 5893 # no transcoding required |
307 | 5894 UploadInstance(_REMOTE, 'Brainix/Flair/IM-0001-0001.dcm')['ID'] |
5895 | |
5896 CleanTarget() | |
295 | 5897 |
306
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5898 subprocess.check_call([ |
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5899 FindExecutable('getscu'), |
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5900 _REMOTE['Server'], |
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5901 str(_REMOTE['DicomPort']), |
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5902 '-aec', 'ORTHANC', |
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5903 '-aet', 'ORTHANCTEST', # pretend to be the other orthanc |
307 | 5904 '-k', '0020,000d=2.16.840.1.113669.632.20.1211.10000357775', |
306
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5905 '-k', '0008,0052=STUDY', |
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5906 '--output-directory', '/tmp/GETSCU/' |
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5907 ], env = env) |
295 | 5908 |
311 | 5909 f1 = '/tmp/GETSCU/MR.1.3.46.670589.11.0.0.11.4.2.0.8743.5.5396.2006120114314079549' |
5910 self.assertTrue(os.path.isfile(f1)) | |
5911 with open(f1, 'rb') as f: | |
5912 self.assertEqual('1.2.840.10008.1.2.1', GetTransferSyntax(f.read())) | |
5913 | |
307 | 5914 CleanTarget() |
295 | 5915 |
5916 # transcoding required | |
311 | 5917 UploadInstance(_REMOTE, 'TransferSyntaxes/1.2.840.10008.1.2.4.50.dcm') |
307 | 5918 |
5919 subprocess.check_call([ | |
5920 FindExecutable('getscu'), | |
5921 _REMOTE['Server'], | |
5922 str(_REMOTE['DicomPort']), | |
5923 '-aec', 'ORTHANC', | |
5924 '-aet', 'ORTHANCTEST', # pretend to be the other orthanc | |
311 | 5925 '-k', '0020,000d=2.16.840.1.113669.632.20.1211.10000357775\\1.2.840.113663.1298.6234813.1.298.20000329.1115122', |
307 | 5926 '-k', '0008,0052=STUDY', |
5927 '--output-directory', '/tmp/GETSCU/' | |
5928 ], env = env) | |
5929 | |
311 | 5930 self.assertTrue(os.path.isfile(f1)) |
5931 with open(f1, 'rb') as f: | |
5932 self.assertEqual('1.2.840.10008.1.2.1', GetTransferSyntax(f.read())) | |
5933 | |
5934 # This file is transcoded from "1.2.840.10008.1.2.4.50" to "1.2.840.10008.1.2.1" | |
5935 # (LittleEndianExplicit is proposed by default by "getscu") | |
5936 f2 = '/tmp/GETSCU/US.1.2.840.113663.1298.1.3.715.20000329.1115326' | |
5937 self.assertTrue(os.path.isfile(f2)) | |
5938 with open(f2, 'rb') as f: | |
5939 self.assertEqual('1.2.840.10008.1.2.1', GetTransferSyntax(f.read())) | |
324
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5940 |
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5941 |
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5942 def test_findscu_truncation(self): |
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5943 # https://groups.google.com/forum/#!msg/orthanc-users/FkckWAHvso8/UbRBAhQ5CwAJ |
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5944 # Fixed by: https://hg.orthanc-server.com/orthanc/rev/2724977419fb |
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5945 UploadInstance(_REMOTE, 'Multiframe.dcm') |
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5946 UploadInstance(_REMOTE, 'ColorTestImageJ.dcm') |
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5947 |
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5948 study = '1.3.46.670589.7.5.8.80001255161.20000323.151537.1' |
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5949 |
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5950 i = CallFindScu([ '-k', '0008,0052=STUDY', '-k', 'StudyInstanceUID' ]) |
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5951 result = re.findall('\(0020,000d\).*?\[(.*?)\]', i) |
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5952 self.assertEqual(2, len(result)) |
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5953 |
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5954 # The "StudyInstanceUID" is set as a list of 5 times the same |
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5955 # study, leading to a string of 249 characters |
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5956 i = CallFindScu([ '-k', '0008,0052=STUDY', '-k', |
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5957 'StudyInstanceUID=%s\\%s\\%s\\%s\\%s' % (( study, ) * 5) ]) |
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5958 result = re.findall('\(0020,000d\).*?\[(.*?)\]', i) |
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5959 self.assertEqual(1, len(result)) |
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5960 |
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5961 # The "StudyInstanceUID" is set as a list of 6 times the same |
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5962 # study, leading to a string of 299 characters. In Orthanc <= |
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5963 # 1.7.2, this is above the value of ORTHANC_MAXIMUM_TAG_LENGTH |
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5964 # == 256, and is thus wiped out by C-FIND SCP. As a |
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5965 # consequence, Orthanc <= 1.7.2 doesn't apply the filter on |
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5966 # "StudyInstanceUID" and returns all the available |
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5967 # studies (i.e. 2). This issue was fixed in Orthanc 1.7.3. |
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5968 i = CallFindScu([ '-k', '0008,0052=STUDY', '-k', |
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5969 'StudyInstanceUID=%s\\%s\\%s\\%s\\%s\\%s' % (( study, ) * 6) ]) |
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5970 result = re.findall('\(0020,000d\).*?\[(.*?)\]', i) |
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5971 self.assertEqual(1, len(result)) |
328
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5972 |
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5973 |
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5974 def test_store_compressed(self): |
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5975 with open(GetDatabasePath('DummyCT.dcm'), 'rb') as f: |
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5976 dicom = f.read() |
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5977 i = DoPost(_REMOTE, '/instances', dicom) ['ID'] |
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5978 sourceSize = len(dicom) |
324
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5979 |
328
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5980 self.assertEqual(0, len(DoGet(_LOCAL, '/instances'))) |
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5981 self.assertEqual(1, len(DoGet(_REMOTE, '/instances'))) |
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5982 |
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5983 # Sending to the local Orthanc 0.8.6 server, without compression: OK |
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5984 jobId = MonitorJob2(_REMOTE, lambda: DoPost( |
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5985 _REMOTE, '/peers/peer/store', { |
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5986 'Resources' : [ i ], |
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5987 'Synchronous' : False, |
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5988 })) |
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5989 |
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5990 job = DoGet(_REMOTE, '/jobs/%s' % jobId) |
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5991 self.assertFalse(job['Content']['Compress']) |
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5992 self.assertEqual('', job['Content']['Peer'][2]) # Password must not be reported |
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5993 self.assertEqual(str(sourceSize), job['Content']['Size']) |
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5994 |
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5995 self.assertEqual(1, len(DoGet(_LOCAL, '/instances'))) |
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5996 DropOrthanc(_LOCAL) |
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5997 |
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5998 # Sending to the local Orthanc 0.8.6 server, with compression: |
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5999 # Not supported by Orthanc 0.8.6 => failure |
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6000 self.assertRaises(Exception, lambda: DoPost(_REMOTE, '/peers/peer/store', { |
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6001 'Resources' : [ i ], |
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6002 'Compress' : True, |
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6003 })) |
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6004 self.assertEqual(0, len(DoGet(_LOCAL, '/instances'))) |
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6005 |
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6006 # Sending to the tested remote server, with compression: OK |
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6007 jobId = MonitorJob2(_REMOTE, lambda: DoPost( |
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6008 _REMOTE, '/peers/self/store', { |
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6009 'Resources' : [ i ], |
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6010 'Compress' : True, |
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6011 'Synchronous' : False, |
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6012 })) |
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6013 |
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6014 job = DoGet(_REMOTE, '/jobs/%s' % jobId) |
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6015 self.assertTrue(job['Content']['Compress']) |
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6016 |
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6017 # Compression must have divided the size of the sent data at least twice |
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6018 self.assertLess(int(job['Content']['Size']), sourceSize / 2) |
332 | 6019 |
6020 | |
6021 def test_move_ambra(self): | |
6022 # "Orthanc + Ambra: Query/Retrieve" (2020-08-25) | |
6023 # https://groups.google.com/g/orthanc-users/c/yIUnZ9v9-Zs/m/GQPXiAOiCQAJ | |
6024 | |
6025 UploadInstance(_REMOTE, '2019-06-17-VedranZdesic.dcm') | |
6026 | |
6027 self.assertFalse(MonitorJob(_REMOTE, lambda: CallMoveScu([ | |
6028 '--study', | |
6029 '-k', 'StudyInstanceUID=' | |
6030 ]))) | |
6031 | |
6032 self.assertFalse(MonitorJob(_REMOTE, lambda: CallMoveScu([ | |
6033 '--study', | |
6034 '-k', 'AccessionNumber=', | |
6035 ]))) | |
6036 | |
6037 self.assertFalse(MonitorJob(_REMOTE, lambda: CallMoveScu([ | |
6038 '--study', | |
6039 '-k', 'AccessionNumber=', | |
6040 '-k', 'StudyInstanceUID=' | |
6041 ]))) | |
6042 | |
6043 self.assertEqual(0, len(DoGet(_LOCAL, '/instances'))) | |
6044 self.assertTrue(MonitorJob(_REMOTE, lambda: CallMoveScu([ | |
6045 '--study', | |
6046 '-k', 'AccessionNumber=CT16000988', | |
6047 '-k', 'StudyInstanceUID=', | |
6048 ]))) | |
6049 self.assertEqual(1, len(DoGet(_LOCAL, '/instances'))) | |
6050 DropOrthanc(_LOCAL) | |
6051 | |
6052 self.assertEqual(0, len(DoGet(_LOCAL, '/instances'))) | |
6053 self.assertTrue(MonitorJob(_REMOTE, lambda: CallMoveScu([ | |
6054 '--study', | |
6055 '-k', 'AccessionNumber=CT16000988', | |
6056 '-k', 'StudyInstanceUID=1.2.840.113619.2.278.3.4194965761.659.1468842739.39', | |
6057 ]))) | |
6058 self.assertEqual(1, len(DoGet(_LOCAL, '/instances'))) | |
6059 DropOrthanc(_LOCAL) | |
6060 | |
6061 # This fails on Orthanc <= 1.7.3 | |
6062 self.assertEqual(0, len(DoGet(_LOCAL, '/instances'))) | |
6063 self.assertTrue(MonitorJob(_REMOTE, lambda: CallMoveScu([ | |
6064 '--study', | |
6065 '-k', 'AccessionNumber=', | |
6066 '-k', 'StudyInstanceUID=1.2.840.113619.2.278.3.4194965761.659.1468842739.39' | |
6067 ]))) | |
6068 self.assertEqual(1, len(DoGet(_LOCAL, '/instances'))) | |
6069 DropOrthanc(_LOCAL) | |
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6070 |
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|
6071 |
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6072 def test_decode_elscint(self): |
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6073 # https://groups.google.com/g/orthanc-users/c/d9anAx6lSis/m/qEzm1x3PAAAJ |
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6074 a = UploadInstance(_REMOTE, '2020-09-12-ELSCINT1-PMSCT_RLE1.dcm')['ID'] |
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6075 b = UploadInstance(_REMOTE, '2020-09-11-Christopher-ELSCINT1-Raw.dcm')['ID'] |
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6076 |
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6077 im = GetImage(_REMOTE, '/instances/%s/frames/0/preview' % a) |
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6078 self.assertEqual("L", im.mode) |
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6079 self.assertEqual(512, im.size[0]) |
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6080 self.assertEqual(512, im.size[1]) |
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6081 |
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|
6082 im = GetImage(_REMOTE, '/instances/%s/frames/0/preview' % b) |
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6083 self.assertEqual("L", im.mode) |
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6084 self.assertEqual(512, im.size[0]) |
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6085 self.assertEqual(512, im.size[1]) |
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6086 |
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|
6087 # The two tests below fail on Orthanc <= 1.7.3 |
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6088 raw = DoGet(_REMOTE, '/instances/%s/frames/0/raw' % a) |
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6089 self.assertEqual(512 * 512 * 2, len(raw)) |
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|
6090 |
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|
6091 raw = DoGet(_REMOTE, '/instances/%s/frames/0/raw' % b) |
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|
6092 self.assertEqual(512 * 512 * 2, len(raw)) |
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|
6093 |
334
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diff
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|
6094 |
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|
6095 def test_rest_modalities_in_study_2(self): |
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|
6096 # Problem reported by Alain Mazy on 2020-09-15 |
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diff
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|
6097 UploadInstance(_REMOTE, 'Comunix/Ct/IM-0001-0001.dcm') |
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|
6098 UploadInstance(_REMOTE, 'Comunix/Pet/IM-0001-0001.dcm') |
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6099 |
335
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|
6100 i = CallFindScu([ '-k', '0008,0052=STUDY', '-k', '0020,000d=', '-k', '0008,0061=' ]) |
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|
6101 modalitiesInStudy = re.findall('\(0008,0061\).*?\[(.*?)\]', i) |
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|
6102 self.assertEqual(1, len(modalitiesInStudy)) |
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|
6103 self.assertEqual('CT\\PT ', modalitiesInStudy[0]) |
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|
6104 |
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diff
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|
6105 for i in [ '', 'CT', 'PT', 'UX', 'UX\\MR', 'CT\\PT', 'UX\\PT', 'CT\\PT', 'UX\\CT\\PT' ]: |
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|
6106 # The empty string '' corresponds to universal matching. |
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|
6107 # The case where "i == 'CT'" failed in Orthanc <= 1.7.3. |
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|
6108 |
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|
6109 if i in [ 'UX', 'UX\\MR' ]: |
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|
6110 expected = 0 |
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6111 else: |
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|
6112 expected = 1 |
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|
6113 |
334
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|
6114 a = DoPost(_REMOTE, '/tools/find', { 'Level' : 'Study', |
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|
6115 'Query' : { 'ModalitiesInStudy' : i }}) |
335
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|
6116 self.assertEqual(expected, len(a)) |
334
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|
6117 |
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test_rest_modalities_in_study_2
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|
6118 i = CallFindScu([ '-k', '0008,0052=STUDY', '-k', '0020,000d=', '-k', '0008,0061=%s' % i ]) |
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|
6119 studyInstanceUid = re.findall('\(0020,000d\).*?\[(.*?)\]', i) |
335
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|
6120 self.assertEqual(expected, len(studyInstanceUid)) |
337
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|
6121 |
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|
6122 |
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|
6123 def test_webdav(self): |
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6124 self.assertRaises(Exception, lambda: DoPropFind(_REMOTE, '/webdav/', 2)) |
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|
6125 |
342
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|
6126 for suffix in [ '', '/' ]: |
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6127 f = DoPropFind(_REMOTE, '/webdav' + suffix, 0) |
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6128 self.assertEqual(1, len(f)) |
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6129 self.assertTrue('/webdav/' in f.keys()) |
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6130 self.assertTrue(f['/webdav/']['folder']) |
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6131 self.assertEqual('webdav', f['/webdav/']['displayname']) |
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|
6132 |
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|
6133 f = DoPropFind(_REMOTE, '/webdav' + suffix, 1) |
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|
6134 self.assertEqual(6, len(f)) |
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6135 self.assertTrue(f['/webdav/']['folder']) |
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|
6136 self.assertEqual('webdav', f['/webdav/']['displayname']) |
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|
6137 |
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|
6138 for i in [ 'by-dates', 'by-patients', 'by-studies', 'by-uids', 'uploads' ]: |
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6139 self.assertTrue(f['/webdav/%s' % i]['folder']) |
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|
6140 self.assertEqual(i, f['/webdav/%s' % i]['displayname']) |
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|
6141 |
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|
6142 for depth in [ 0, 1 ]: |
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|
6143 for suffix2 in [ '', '/' ]: |
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|
6144 g = DoPropFind(_REMOTE, '/webdav/%s%s' % (i, suffix2), depth) |
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|
6145 |
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|
6146 if i == 'uploads': |
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|
6147 # Empty folders might still exist in "/uploads/" |
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6148 self.assertTrue('/webdav/uploads/' in g) |
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|
6149 self.assertEqual('uploads', g['/webdav/uploads/']['displayname']) |
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|
6150 for j in g.items(): |
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6151 self.assertTrue(g.items()[0][1]['folder']) |
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|
6152 else: |
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|
6153 self.assertEqual(1, len(g)) |
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|
6154 self.assertEqual('/webdav/%s/' % i, g.items()[0][0]) |
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|
6155 self.assertTrue(g.items()[0][1]['folder']) |
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|
6156 self.assertEqual(i, g.items()[0][1]['displayname']) |
341
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|
6157 |
342
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|
6158 self.assertEqual(0, len(DoGet(_REMOTE, '/patients'))) |
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|
6159 with open(GetDatabasePath('DummyCT.dcm'), 'rb') as f: |
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|
6160 DoPut(_REMOTE, '/webdav/uploads/dummy', f.read(), 'text/plain') |
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|
6161 |
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|
6162 while len(DoGet(_REMOTE, '/patients')) == 0: |
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|
6163 time.sleep(0.01) |
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|
6164 self.assertEqual(1, len(DoGet(_REMOTE, '/patients'))) |
337
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|
6165 |
349
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|
6166 |
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|
6167 def test_log_categories(self): |
350 | 6168 original = DoGet(_REMOTE, '/tools/log-level-http') |
349
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|
6169 |
350 | 6170 DoPut(_REMOTE, '/tools/log-level-http', 'default') |
6171 self.assertEqual('default', DoGet(_REMOTE, '/tools/log-level-http')) | |
349
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|
6172 DoGet(_REMOTE, '/system') |
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|
6173 |
350 | 6174 DoPut(_REMOTE, '/tools/log-level-http', 'verbose') |
6175 self.assertEqual('verbose', DoGet(_REMOTE, '/tools/log-level-http')) | |
349
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|
6176 DoGet(_REMOTE, '/system') |
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Sebastien Jodogne <s.jodogne@gmail.com>
parents:
348
diff
changeset
|
6177 |
350 | 6178 DoPut(_REMOTE, '/tools/log-level-http', 'trace') |
6179 self.assertEqual('trace', DoGet(_REMOTE, '/tools/log-level-http')) | |
349
698898a93a10
test_log_categories
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
348
diff
changeset
|
6180 DoGet(_REMOTE, '/system') |
698898a93a10
test_log_categories
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
348
diff
changeset
|
6181 |
350 | 6182 self.assertRaises(Exception, lambda: DoPut(_REMOTE, '/tools/log-level-http', 'nope')) |
349
698898a93a10
test_log_categories
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
348
diff
changeset
|
6183 |
698898a93a10
test_log_categories
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
348
diff
changeset
|
6184 # Switch back to the original log level |
350 | 6185 DoPut(_REMOTE, '/tools/log-level-http', original) |
6186 | |
6187 for c in [ 'generic', 'http', 'dicom', 'plugins', 'sqlite', 'lua', 'jobs' ]: | |
349
698898a93a10
test_log_categories
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
348
diff
changeset
|
6188 DoPut(_REMOTE, '/tools/log-level-%s' % c, DoGet(_REMOTE, '/tools/log-level-%s' % c)) |
698898a93a10
test_log_categories
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
348
diff
changeset
|
6189 |
698898a93a10
test_log_categories
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
348
diff
changeset
|
6190 self.assertRaises(Exception, lambda: DoPut(_REMOTE, '/tools/log-level-nope', 'default')) |
357 | 6191 |
6192 | |
6193 def test_upload_zip(self): | |
6194 f = StringIO() | |
6195 with zipfile.ZipFile(f, 'w') as z: | |
6196 z.writestr('hello/world/invalid.txt', 'Hello world') | |
6197 with open(GetDatabasePath('DummyCT.dcm'), 'rb') as g: | |
6198 c = g.read() | |
6199 z.writestr('hello/world/dicom1.dcm', c) | |
6200 z.writestr('hello/world/dicom2.dcm', c) | |
6201 | |
6202 f.seek(0) | |
6203 i = DoPost(_REMOTE, '/instances', f.read()) | |
6204 | |
6205 self.assertEqual(2, len(i)) | |
6206 self.assertEqual(i[0], i[1]) | |
6207 self.assertEqual(6, len(i[0])) | |
6208 self.assertEqual('66a662ce-7430e543-bad44d47-0dc5a943-ec7a538d', i[0]['ID']) | |
6209 self.assertEqual('f2635388-f01d497a-15f7c06b-ad7dba06-c4c599fe', i[0]['ParentSeries']) | |
6210 self.assertEqual('b9c08539-26f93bde-c81ab0d7-bffaf2cb-a4d0bdd0', i[0]['ParentStudy']) | |
6211 self.assertEqual('6816cb19-844d5aee-85245eba-28e841e6-2414fae2', i[0]['ParentPatient']) | |
6212 self.assertEqual('/instances/66a662ce-7430e543-bad44d47-0dc5a943-ec7a538d', i[0]['Path']) | |
6213 | |
6214 # Both are "Success" (instead of one "AlreadyStored"), because "OverwriteInstance" is true | |
6215 self.assertEqual('Success', i[0]['Status']) | |
361
6cf5cc4d0a99
test_transfer_syntax_no_metaheader
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
359
diff
changeset
|
6216 |
6cf5cc4d0a99
test_transfer_syntax_no_metaheader
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
359
diff
changeset
|
6217 |
6cf5cc4d0a99
test_transfer_syntax_no_metaheader
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
359
diff
changeset
|
6218 def test_transfer_syntax_no_metaheader(self): |
6cf5cc4d0a99
test_transfer_syntax_no_metaheader
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
359
diff
changeset
|
6219 a = UploadInstance(_REMOTE, 'TransferSyntaxes/1.2.840.10008.1.2.dcm')['ID'] |
6cf5cc4d0a99
test_transfer_syntax_no_metaheader
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
359
diff
changeset
|
6220 m = DoGet(_REMOTE, '/instances/%s/metadata?expand' % a) |
6cf5cc4d0a99
test_transfer_syntax_no_metaheader
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
359
diff
changeset
|
6221 self.assertEqual('1.2.840.10008.5.1.4.1.1.4', m['SopClassUid']) |
6cf5cc4d0a99
test_transfer_syntax_no_metaheader
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
359
diff
changeset
|
6222 |
6cf5cc4d0a99
test_transfer_syntax_no_metaheader
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
359
diff
changeset
|
6223 # This fails on Orthanc <= 1.8.1 |
6cf5cc4d0a99
test_transfer_syntax_no_metaheader
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
359
diff
changeset
|
6224 self.assertTrue('TransferSyntax' in m) |
6cf5cc4d0a99
test_transfer_syntax_no_metaheader
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
359
diff
changeset
|
6225 self.assertEqual('1.2.840.10008.1.2', m['TransferSyntax']) |
368
2cc40121c3a8
test_upload_multipart_1 and test_upload_multipart_2
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
363
diff
changeset
|
6226 |
2cc40121c3a8
test_upload_multipart_1 and test_upload_multipart_2
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
363
diff
changeset
|
6227 |
2cc40121c3a8
test_upload_multipart_1 and test_upload_multipart_2
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
363
diff
changeset
|
6228 def test_upload_multipart_1(self): |
2cc40121c3a8
test_upload_multipart_1 and test_upload_multipart_2
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
363
diff
changeset
|
6229 # This tests the "Upload" button in Orthanc Explorer |
2cc40121c3a8
test_upload_multipart_1 and test_upload_multipart_2
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
363
diff
changeset
|
6230 |
2cc40121c3a8
test_upload_multipart_1 and test_upload_multipart_2
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
363
diff
changeset
|
6231 def EncodeChunk(data, boundary, filename): |
2cc40121c3a8
test_upload_multipart_1 and test_upload_multipart_2
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
363
diff
changeset
|
6232 return (('--%s\r\n' + |
2cc40121c3a8
test_upload_multipart_1 and test_upload_multipart_2
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
363
diff
changeset
|
6233 'Content-Disposition : form-data ; name ="files[]" ; filename = "%s" \r\n' + |
2cc40121c3a8
test_upload_multipart_1 and test_upload_multipart_2
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
363
diff
changeset
|
6234 '\r\n%s\r\n') % (boundary, filename, data)) |
2cc40121c3a8
test_upload_multipart_1 and test_upload_multipart_2
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
363
diff
changeset
|
6235 |
2cc40121c3a8
test_upload_multipart_1 and test_upload_multipart_2
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
363
diff
changeset
|
6236 with open(GetDatabasePath('DummyCT.dcm'), 'rb') as f: |
2cc40121c3a8
test_upload_multipart_1 and test_upload_multipart_2
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
363
diff
changeset
|
6237 dcm1 = f.read() |
2cc40121c3a8
test_upload_multipart_1 and test_upload_multipart_2
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
363
diff
changeset
|
6238 |
2cc40121c3a8
test_upload_multipart_1 and test_upload_multipart_2
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
363
diff
changeset
|
6239 with open(GetDatabasePath('ColorTestMalaterre.dcm'), 'rb') as f: |
2cc40121c3a8
test_upload_multipart_1 and test_upload_multipart_2
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
363
diff
changeset
|
6240 dcm2 = f.read() |
2cc40121c3a8
test_upload_multipart_1 and test_upload_multipart_2
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
363
diff
changeset
|
6241 |
2cc40121c3a8
test_upload_multipart_1 and test_upload_multipart_2
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
363
diff
changeset
|
6242 self.assertEqual(0, len(DoGet(_REMOTE, '/instances'))) |
2cc40121c3a8
test_upload_multipart_1 and test_upload_multipart_2
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
363
diff
changeset
|
6243 |
2cc40121c3a8
test_upload_multipart_1 and test_upload_multipart_2
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
363
diff
changeset
|
6244 boundary = '----WebKitFormBoundarypJDNQqJPoXiorRmQ' |
2cc40121c3a8
test_upload_multipart_1 and test_upload_multipart_2
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
363
diff
changeset
|
6245 m = DoPost(_REMOTE, '/instances', (EncodeChunk(dcm1, boundary, 'DummyCT.dcm') + |
2cc40121c3a8
test_upload_multipart_1 and test_upload_multipart_2
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
363
diff
changeset
|
6246 EncodeChunk(dcm2, boundary, 'ColorTestMalaterre.dcm') + |
2cc40121c3a8
test_upload_multipart_1 and test_upload_multipart_2
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
363
diff
changeset
|
6247 '--' + boundary + '--'), headers = { |
2cc40121c3a8
test_upload_multipart_1 and test_upload_multipart_2
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
363
diff
changeset
|
6248 'Content-Type' : 'multipart/form-data ; boundary = %s ' % boundary, |
2cc40121c3a8
test_upload_multipart_1 and test_upload_multipart_2
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
363
diff
changeset
|
6249 'X-Requested-With' : 'XMLHttpRequest', |
2cc40121c3a8
test_upload_multipart_1 and test_upload_multipart_2
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
363
diff
changeset
|
6250 }) |
2cc40121c3a8
test_upload_multipart_1 and test_upload_multipart_2
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
363
diff
changeset
|
6251 |
2cc40121c3a8
test_upload_multipart_1 and test_upload_multipart_2
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
363
diff
changeset
|
6252 self.assertEqual(2, len(DoGet(_REMOTE, '/instances'))) |
2cc40121c3a8
test_upload_multipart_1 and test_upload_multipart_2
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
363
diff
changeset
|
6253 |
2cc40121c3a8
test_upload_multipart_1 and test_upload_multipart_2
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
363
diff
changeset
|
6254 |
2cc40121c3a8
test_upload_multipart_1 and test_upload_multipart_2
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
363
diff
changeset
|
6255 def test_upload_multipart_2(self): |
2cc40121c3a8
test_upload_multipart_1 and test_upload_multipart_2
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
363
diff
changeset
|
6256 # This tests the "maxChunkSize" option of "jQuery File Upload |
2cc40121c3a8
test_upload_multipart_1 and test_upload_multipart_2
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
363
diff
changeset
|
6257 # 5.12", whose source code can be found in: |
2cc40121c3a8
test_upload_multipart_1 and test_upload_multipart_2
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
363
diff
changeset
|
6258 # "OrthancServer/OrthancExplorer/libs/jquery-file-upload/" |
2cc40121c3a8
test_upload_multipart_1 and test_upload_multipart_2
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
363
diff
changeset
|
6259 |
2cc40121c3a8
test_upload_multipart_1 and test_upload_multipart_2
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
363
diff
changeset
|
6260 def EncodeBody(data, boundary, filename): |
2cc40121c3a8
test_upload_multipart_1 and test_upload_multipart_2
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
363
diff
changeset
|
6261 return (('--%s\r\n' + |
2cc40121c3a8
test_upload_multipart_1 and test_upload_multipart_2
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
363
diff
changeset
|
6262 'Content-Disposition: form-data; name="files[]"; filename="%s"\r\n' + |
2cc40121c3a8
test_upload_multipart_1 and test_upload_multipart_2
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
363
diff
changeset
|
6263 '\r\n%s\r\n--%s') % (boundary, filename, data, boundary)) |
2cc40121c3a8
test_upload_multipart_1 and test_upload_multipart_2
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
363
diff
changeset
|
6264 |
2cc40121c3a8
test_upload_multipart_1 and test_upload_multipart_2
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
363
diff
changeset
|
6265 with open(GetDatabasePath('DummyCT.dcm'), 'rb') as f: |
2cc40121c3a8
test_upload_multipart_1 and test_upload_multipart_2
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
363
diff
changeset
|
6266 dcm = f.read() |
2cc40121c3a8
test_upload_multipart_1 and test_upload_multipart_2
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
363
diff
changeset
|
6267 |
2cc40121c3a8
test_upload_multipart_1 and test_upload_multipart_2
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
363
diff
changeset
|
6268 with open(GetDatabasePath('ColorTestMalaterre.dcm'), 'rb') as f: |
2cc40121c3a8
test_upload_multipart_1 and test_upload_multipart_2
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
363
diff
changeset
|
6269 dcm2 = f.read() |
2cc40121c3a8
test_upload_multipart_1 and test_upload_multipart_2
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
363
diff
changeset
|
6270 |
2cc40121c3a8
test_upload_multipart_1 and test_upload_multipart_2
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
363
diff
changeset
|
6271 boundary = '----WebKitFormBoundarypJDNQqJPoXiorRmQ' |
2cc40121c3a8
test_upload_multipart_1 and test_upload_multipart_2
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
363
diff
changeset
|
6272 |
2cc40121c3a8
test_upload_multipart_1 and test_upload_multipart_2
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
363
diff
changeset
|
6273 self.assertEqual(0, len(DoGet(_REMOTE, '/instances'))) |
2cc40121c3a8
test_upload_multipart_1 and test_upload_multipart_2
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
363
diff
changeset
|
6274 m = DoPost(_REMOTE, '/instances', |
2cc40121c3a8
test_upload_multipart_1 and test_upload_multipart_2
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
363
diff
changeset
|
6275 EncodeBody(dcm[0:1000], boundary, 'DummyCT.dcm'), |
2cc40121c3a8
test_upload_multipart_1 and test_upload_multipart_2
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parents:
363
diff
changeset
|
6276 headers = { |
2cc40121c3a8
test_upload_multipart_1 and test_upload_multipart_2
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
363
diff
changeset
|
6277 'Content-Type' : 'multipart/form-data; boundary=%s' % boundary, |
2cc40121c3a8
test_upload_multipart_1 and test_upload_multipart_2
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
363
diff
changeset
|
6278 'X-Requested-With' : 'XMLHttpRequest', |
2cc40121c3a8
test_upload_multipart_1 and test_upload_multipart_2
Sebastien Jodogne <s.jodogne@gmail.com>
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363
diff
changeset
|
6279 'X-File-Name' : 'DummyCT.dcm', |
2cc40121c3a8
test_upload_multipart_1 and test_upload_multipart_2
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
363
diff
changeset
|
6280 'X-File-Size' : str(len(dcm)), |
2cc40121c3a8
test_upload_multipart_1 and test_upload_multipart_2
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parents:
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diff
changeset
|
6281 }) |
2cc40121c3a8
test_upload_multipart_1 and test_upload_multipart_2
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
363
diff
changeset
|
6282 |
2cc40121c3a8
test_upload_multipart_1 and test_upload_multipart_2
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
363
diff
changeset
|
6283 self.assertEqual(0, len(DoGet(_REMOTE, '/instances'))) |
2cc40121c3a8
test_upload_multipart_1 and test_upload_multipart_2
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
363
diff
changeset
|
6284 m = DoPost(_REMOTE, '/instances', |
2cc40121c3a8
test_upload_multipart_1 and test_upload_multipart_2
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
363
diff
changeset
|
6285 EncodeBody(dcm[1000:2000], boundary, 'DummyCT.dcm'), |
2cc40121c3a8
test_upload_multipart_1 and test_upload_multipart_2
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
363
diff
changeset
|
6286 headers = { |
2cc40121c3a8
test_upload_multipart_1 and test_upload_multipart_2
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
363
diff
changeset
|
6287 'Content-Type' : 'multipart/form-data; boundary=%s' % boundary, |
2cc40121c3a8
test_upload_multipart_1 and test_upload_multipart_2
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
363
diff
changeset
|
6288 'X-Requested-With' : 'XMLHttpRequest', |
2cc40121c3a8
test_upload_multipart_1 and test_upload_multipart_2
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
363
diff
changeset
|
6289 'X-File-Name' : 'DummyCT.dcm', |
2cc40121c3a8
test_upload_multipart_1 and test_upload_multipart_2
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
363
diff
changeset
|
6290 'X-File-Size' : str(len(dcm)), |
2cc40121c3a8
test_upload_multipart_1 and test_upload_multipart_2
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
changeset
|
6291 }) |
2cc40121c3a8
test_upload_multipart_1 and test_upload_multipart_2
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
363
diff
changeset
|
6292 self.assertEqual(0, len(DoGet(_REMOTE, '/instances'))) |
2cc40121c3a8
test_upload_multipart_1 and test_upload_multipart_2
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
363
diff
changeset
|
6293 |
2cc40121c3a8
test_upload_multipart_1 and test_upload_multipart_2
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
363
diff
changeset
|
6294 m = DoPost(_REMOTE, '/instances', |
2cc40121c3a8
test_upload_multipart_1 and test_upload_multipart_2
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
363
diff
changeset
|
6295 EncodeBody(dcm2, boundary, 'ColorTestMalaterre.dcm'), |
2cc40121c3a8
test_upload_multipart_1 and test_upload_multipart_2
Sebastien Jodogne <s.jodogne@gmail.com>
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diff
changeset
|
6296 headers = { |
2cc40121c3a8
test_upload_multipart_1 and test_upload_multipart_2
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parents:
363
diff
changeset
|
6297 'Content-Type' : 'multipart/form-data; boundary=%s' % boundary, |
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6298 'X-Requested-With' : 'XMLHttpRequest', |
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test_upload_multipart_1 and test_upload_multipart_2
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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6299 'X-File-Name' : 'ColorTestMalaterre.dcm', |
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test_upload_multipart_1 and test_upload_multipart_2
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
363
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6300 'X-File-Size' : str(len(dcm2)), |
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parents:
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6301 }) |
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parents:
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6302 |
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Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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6303 self.assertEqual(1, len(DoGet(_REMOTE, '/instances'))) |
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test_upload_multipart_1 and test_upload_multipart_2
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
363
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6304 |
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parents:
363
diff
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6305 # Upload the last chunk => the file is now entirely available |
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Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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6306 m = DoPost(_REMOTE, '/instances', |
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parents:
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6307 EncodeBody(dcm[2000:len(dcm)], boundary, 'DummyCT.dcm'), |
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parents:
363
diff
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6308 headers = { |
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Sebastien Jodogne <s.jodogne@gmail.com>
parents:
363
diff
changeset
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6309 'Content-Type' : 'multipart/form-data; boundary=%s' % boundary, |
2cc40121c3a8
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Sebastien Jodogne <s.jodogne@gmail.com>
parents:
363
diff
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|
6310 'X-Requested-With' : 'XMLHttpRequest', |
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test_upload_multipart_1 and test_upload_multipart_2
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
363
diff
changeset
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6311 'X-File-Name' : 'DummyCT.dcm', |
2cc40121c3a8
test_upload_multipart_1 and test_upload_multipart_2
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
363
diff
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6312 'X-File-Size' : str(len(dcm)), |
2cc40121c3a8
test_upload_multipart_1 and test_upload_multipart_2
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parents:
363
diff
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6313 }) |
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test_upload_multipart_1 and test_upload_multipart_2
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
363
diff
changeset
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6314 |
2cc40121c3a8
test_upload_multipart_1 and test_upload_multipart_2
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
363
diff
changeset
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6315 self.assertEqual(2, len(DoGet(_REMOTE, '/instances'))) |