Mercurial > hg > orthanc-tests
annotate Tests/Tests.py @ 22:8f4b70c89467
readme
| author | Sebastien Jodogne <s.jodogne@gmail.com> |
|---|---|
| date | Mon, 22 Jun 2015 16:29:08 +0200 |
| parents | 2a29bcff60a7 |
| children | 30ecc857fa07 |
| rev | line source |
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| 22 | 1 #!/usr/bin/env python |
| 2 # -*- coding: utf-8 -*- | |
| 3 | |
| 4 | |
| 3 | 5 # Orthanc - A Lightweight, RESTful DICOM Store |
| 6 # Copyright (C) 2012-2015 Sebastien Jodogne, Medical Physics | |
| 7 # Department, University Hospital of Liege, Belgium | |
| 8 # | |
| 9 # This program is free software: you can redistribute it and/or | |
| 10 # modify it under the terms of the GNU General Public License as | |
| 11 # published by the Free Software Foundation, either version 3 of the | |
| 12 # License, or (at your option) any later version. | |
| 13 # | |
| 14 # This program is distributed in the hope that it will be useful, but | |
| 15 # WITHOUT ANY WARRANTY; without even the implied warranty of | |
| 16 # MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU | |
| 17 # General Public License for more details. | |
| 18 # | |
| 19 # You should have received a copy of the GNU General Public License | |
| 20 # along with this program. If not, see <http://www.gnu.org/licenses/>. | |
| 21 | |
| 22 | |
| 14 | 23 import tempfile |
| 3 | 24 import unittest |
| 25 | |
| 11 | 26 from PIL import ImageChops |
| 3 | 27 from Toolbox import * |
| 13 | 28 from xml.dom import minidom |
| 3 | 29 |
| 30 _LOCAL = None | |
| 31 _REMOTE = None | |
| 32 | |
| 33 | |
| 34 def SetOrthancParameters(local, remote): | |
| 35 global _LOCAL, _REMOTE | |
| 36 _LOCAL = local | |
| 37 _REMOTE = remote | |
| 38 | |
| 39 | |
| 14 | 40 def ExtractDicomTags(rawDicom, tags): |
| 41 with tempfile.NamedTemporaryFile(delete = True) as f: | |
| 42 f.write(rawDicom) | |
| 43 f.flush() | |
| 44 data = subprocess.check_output([ 'dcm2xml', f.name ]) | |
| 45 | |
| 46 result = [] | |
| 47 for tag in tags: | |
| 48 match = re.search('<element[^>]+name="%s">([^>]*)</element>' % tag, data) | |
| 49 if match == None: | |
| 50 result.append('') | |
| 51 else: | |
| 52 result.append(match.group(1)) | |
| 53 | |
| 54 return result | |
| 55 | |
| 56 | |
| 15 | 57 def InstallLuaScript(path): |
| 58 with open(GetDatabasePath(path), 'r') as f: | |
| 59 DoPost(_REMOTE, '/tools/execute-script', f.read(), 'application/lua') | |
| 60 | |
| 61 | |
| 62 def UninstallLuaCallbacks(): | |
| 63 DoPost(_REMOTE, '/tools/execute-script', 'function OnStoredInstance() end', 'application/lua') | |
| 64 | |
| 65 | |
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66 def CompareLists(a, b): |
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67 if len(a) != len(b): |
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68 return False |
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69 |
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70 for i in range(len(a)): |
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71 d = a[i] - b[i] |
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72 if abs(d) >= 0.51: # Add some tolerance for rounding errors |
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73 return False |
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74 |
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75 return True |
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76 |
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77 |
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78 |
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79 |
| 15 | 80 |
| 3 | 81 class Orthanc(unittest.TestCase): |
| 82 def setUp(self): | |
| 83 DropOrthanc(_LOCAL) | |
| 84 DropOrthanc(_REMOTE) | |
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85 #print "In test", self._testMethodName |
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86 |
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87 def AssertSameImages(self, truth, url): |
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88 im = GetImage(_REMOTE, url) |
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89 self.assertTrue(CompareLists(truth, im.getdata())) |
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90 |
| 3 | 91 |
| 92 def test_system(self): | |
| 93 self.assertTrue('Version' in DoGet(_REMOTE, '/system')) | |
| 94 self.assertEqual('0', DoGet(_REMOTE, '/statistics')['TotalDiskSize']) | |
| 95 self.assertEqual('0', DoGet(_REMOTE, '/statistics')['TotalUncompressedSize']) | |
| 96 | |
| 97 def test_upload(self): | |
| 98 u = UploadInstance(_REMOTE, 'DummyCT.dcm') | |
| 99 self.assertEqual('Success', u['Status']) | |
| 100 u = UploadInstance(_REMOTE, 'DummyCT.dcm') | |
| 101 self.assertEqual('AlreadyStored', u['Status']) | |
| 102 self.assertEqual(1, len(DoGet(_REMOTE, '/patients'))) | |
| 103 self.assertEqual(1, len(DoGet(_REMOTE, '/studies'))) | |
| 104 self.assertEqual(1, len(DoGet(_REMOTE, '/series'))) | |
| 105 self.assertEqual(1, len(DoGet(_REMOTE, '/instances'))) | |
| 106 | |
| 107 i = DoGet(_REMOTE, '/instances/%s/simplified-tags' % u['ID']) | |
| 108 self.assertEqual('20070101', i['StudyDate']) | |
| 109 | |
| 110 | |
| 5 | 111 def test_upload_2(self): |
| 3 | 112 i = UploadInstance(_REMOTE, 'DummyCT.dcm')['ID'] |
| 113 instance = DoGet(_REMOTE, '/instances/%s' % i) | |
| 114 self.assertEqual(i, instance['ID']) | |
| 115 self.assertEqual('1.2.840.113619.2.176.2025.1499492.7040.1171286242.109', | |
| 116 instance['MainDicomTags']['SOPInstanceUID']) | |
| 117 | |
| 118 series = DoGet(_REMOTE, '/series/%s' % instance['ParentSeries']) | |
| 119 self.assertEqual('1.2.840.113619.2.176.2025.1499492.7391.1171285944.394', | |
| 120 series['MainDicomTags']['SeriesInstanceUID']) | |
| 121 | |
| 122 study = DoGet(_REMOTE, '/studies/%s' % series['ParentStudy']) | |
| 123 self.assertEqual('1.2.840.113619.2.176.2025.1499492.7391.1171285944.390', | |
| 124 study['MainDicomTags']['StudyInstanceUID']) | |
| 125 | |
| 126 patient = DoGet(_REMOTE, '/patients/%s' % study['ParentPatient']) | |
| 127 self.assertEqual('ozp00SjY2xG', | |
| 128 patient['MainDicomTags']['PatientID']) | |
| 129 | |
| 130 dicom = DoGet(_REMOTE, '/instances/%s/file' % instance['ID']) | |
| 131 self.assertEqual(2472, len(dicom)) | |
| 132 self.assertEqual('3e29b869978b6db4886355a2b1132124', ComputeMD5(dicom)) | |
| 133 self.assertEqual(1, len(DoGet(_REMOTE, '/instances/%s/frames' % i))) | |
| 134 self.assertEqual('TWINOW', DoGet(_REMOTE, '/instances/%s/simplified-tags' % i)['StationName']) | |
| 135 self.assertEqual('TWINOW', DoGet(_REMOTE, '/instances/%s/tags' % i)['0008,1010']['Value']) | |
| 136 | |
| 137 | |
| 5 | 138 def test_images(self): |
| 139 i = UploadInstance(_REMOTE, 'Phenix/IM-0001-0001.dcm')['ID'] | |
| 140 self.assertEqual(1, len(DoGet(_REMOTE, '/instances/%s/frames' % i))) | |
| 3 | 141 |
| 5 | 142 im = GetImage(_REMOTE, '/instances/%s/preview' % i) |
| 143 self.assertEqual("L", im.mode) | |
| 144 self.assertEqual(512, im.size[0]) | |
| 145 self.assertEqual(358, im.size[1]) | |
| 146 | |
| 147 im = GetImage(_REMOTE, '/instances/%s/image-uint8' % i) | |
| 148 self.assertEqual("L", im.mode) | |
| 149 self.assertEqual(512, im.size[0]) | |
| 150 self.assertEqual(358, im.size[1]) | |
| 151 | |
| 152 im = GetImage(_REMOTE, '/instances/%s/image-uint16' % i) | |
| 153 self.assertEqual(512, im.size[0]) | |
| 154 self.assertEqual(358, im.size[1]) | |
| 155 | |
| 156 im = GetImage(_REMOTE, '/instances/%s/frames/0/preview' % i) | |
| 157 self.assertEqual("L", im.mode) | |
| 158 self.assertEqual(512, im.size[0]) | |
| 159 self.assertEqual(358, im.size[1]) | |
| 160 | |
| 161 im = GetImage(_REMOTE, '/instances/%s/frames/0/image-uint8' % i) | |
| 162 self.assertEqual("L", im.mode) | |
| 163 self.assertEqual(512, im.size[0]) | |
| 164 self.assertEqual(358, im.size[1]) | |
| 165 | |
| 166 im = GetImage(_REMOTE, '/instances/%s/frames/0/image-uint16' % i) | |
| 167 self.assertEqual(512, im.size[0]) | |
| 168 self.assertEqual(358, im.size[1]) | |
| 169 | |
| 6 | 170 |
| 171 def test_hierarchy(self): | |
| 172 UploadFolder(_REMOTE, 'Brainix/Epi') | |
| 173 UploadFolder(_REMOTE, 'Brainix/Flair') | |
| 174 UploadFolder(_REMOTE, 'Knee/T1') | |
| 175 UploadFolder(_REMOTE, 'Knee/T2') | |
| 176 | |
| 177 p = DoGet(_REMOTE, '/patients') | |
| 178 s = DoGet(_REMOTE, '/studies') | |
| 179 t = DoGet(_REMOTE, '/series') | |
| 180 self.assertEqual(2, len(p)) | |
| 181 self.assertEqual(2, len(s)) | |
| 182 self.assertEqual(4, len(t)) | |
| 183 self.assertEqual(94, len(DoGet(_REMOTE, '/instances'))) | |
| 184 | |
| 185 brainixPatient = '16738bc3-e47ed42a-43ce044c-a3414a45-cb069bd0' | |
| 186 brainixStudy = '27f7126f-4f66fb14-03f4081b-f9341db2-53925988' | |
| 187 brainixEpi = '2ac1316d-3e432022-62eabff2-c59f5475-9b1ac3f8' | |
| 188 brainixFlair = '1e2c125c-411b8e86-3f4fe68e-a7584dd3-c6da78f0' | |
| 189 | |
| 190 kneePatient = 'ca29faea-b6a0e17f-067743a1-8b778011-a48b2a17' | |
| 191 kneeStudy = '0a9b3153-2512774b-2d9580de-1fc3dcf6-3bd83918' | |
| 192 kneeT1 = '6de73705-c4e65c1b-9d9ea1b5-cabcd8e7-f15e4285' | |
| 193 kneeT2 = 'bbf7a453-0d34251a-03663b55-46bb31b9-ffd74c59' | |
| 194 | |
| 195 self.assertTrue(brainixPatient in p) | |
| 196 self.assertTrue(kneePatient in p) | |
| 197 self.assertTrue(brainixStudy in s) | |
| 198 self.assertTrue(kneeStudy in s) | |
| 199 self.assertTrue(brainixEpi in t) | |
| 200 self.assertTrue(brainixFlair in t) | |
| 201 self.assertTrue(kneeT1 in t) | |
| 202 self.assertTrue(kneeT2 in t) | |
| 203 | |
| 204 self.assertEqual(44, len(DoGet(_REMOTE, '/patients/%s/instances' % brainixPatient))) | |
| 205 self.assertEqual(2, len(DoGet(_REMOTE, '/patients/%s/series' % brainixPatient))) | |
| 206 self.assertEqual(1, len(DoGet(_REMOTE, '/patients/%s/studies' % brainixPatient))) | |
| 207 | |
| 208 self.assertEqual(50, len(DoGet(_REMOTE, '/patients/%s/instances' % kneePatient))) | |
| 209 self.assertEqual(2, len(DoGet(_REMOTE, '/patients/%s/series' % kneePatient))) | |
| 210 self.assertEqual(1, len(DoGet(_REMOTE, '/patients/%s/studies' % kneePatient))) | |
| 211 | |
| 212 self.assertEqual(2, len(DoGet(_REMOTE, '/studies/%s/series' % brainixStudy))) | |
| 213 self.assertEqual(44, len(DoGet(_REMOTE, '/studies/%s/instances' % brainixStudy))) | |
| 214 | |
| 215 self.assertEqual(2, len(DoGet(_REMOTE, '/studies/%s/series' % kneeStudy))) | |
| 216 self.assertEqual(50, len(DoGet(_REMOTE, '/studies/%s/instances' % kneeStudy))) | |
| 217 | |
| 218 self.assertEqual(22, len(DoGet(_REMOTE, '/series/%s/instances' % brainixEpi))) | |
| 219 self.assertEqual(22, len(DoGet(_REMOTE, '/series/%s/instances' % brainixFlair))) | |
| 220 self.assertEqual(24, len(DoGet(_REMOTE, '/series/%s/instances' % kneeT1))) | |
| 221 self.assertEqual(26, len(DoGet(_REMOTE, '/series/%s/instances' % kneeT2))) | |
| 222 | |
| 223 for patient in p: | |
| 224 for study in DoGet(_REMOTE, '/patients/%s/studies' % patient): | |
| 225 self.assertEqual(patient, study['ParentPatient']) | |
| 226 for series in DoGet(_REMOTE, '/studies/%s/series' % study['ID']): | |
| 227 self.assertEqual(study['ID'], series['ParentStudy']) | |
| 228 for instance in DoGet(_REMOTE, '/series/%s/instances' % series['ID']): | |
| 229 self.assertEqual(series['ID'], instance['ParentSeries']) | |
| 230 | |
| 231 self.assertEqual(json.dumps(DoGet(_REMOTE, '/instances/%s/attachments/dicom-as-json/data' % instance['ID'])), | |
| 232 json.dumps(DoGet(_REMOTE, '/instances/%s/tags' % instance['ID']))) | |
| 233 | |
| 234 | |
| 235 r = DoDelete(_REMOTE, "/studies/%s" % brainixStudy)['RemainingAncestor'] | |
| 236 self.assertEqual(1, len(DoGet(_REMOTE, '/patients'))) | |
| 237 self.assertEqual(1, len(DoGet(_REMOTE, '/studies'))) | |
| 238 self.assertEqual(2, len(DoGet(_REMOTE, '/series'))) | |
| 239 self.assertEqual(50, len(DoGet(_REMOTE, '/instances'))) | |
| 240 self.assertEqual(None, r) | |
| 241 | |
| 242 r = DoDelete(_REMOTE, "/series/%s" % kneeT2)['RemainingAncestor'] | |
| 243 self.assertEqual(1, len(DoGet(_REMOTE, '/patients'))) | |
| 244 self.assertEqual(1, len(DoGet(_REMOTE, '/studies'))) | |
| 245 self.assertEqual(1, len(DoGet(_REMOTE, '/series'))) | |
| 246 self.assertEqual(24, len(DoGet(_REMOTE, '/instances'))) | |
| 247 self.assertEqual('Study', r['Type']) | |
| 248 self.assertEqual(kneeStudy, r['ID']) | |
| 249 | |
| 250 r = DoDelete(_REMOTE, "/instances/%s" % DoGet(_REMOTE, '/instances')[0])['RemainingAncestor'] | |
| 251 self.assertEqual(1, len(DoGet(_REMOTE, '/patients'))) | |
| 252 self.assertEqual(1, len(DoGet(_REMOTE, '/studies'))) | |
| 253 self.assertEqual(1, len(DoGet(_REMOTE, '/series'))) | |
| 254 self.assertEqual(23, len(DoGet(_REMOTE, '/instances'))) | |
| 255 self.assertEqual('Series', r['Type']) | |
| 256 self.assertEqual(kneeT1, r['ID']) | |
| 257 | |
| 258 r = DoDelete(_REMOTE, "/patients/%s" % kneePatient)['RemainingAncestor'] | |
| 259 self.assertEqual(0, len(DoGet(_REMOTE, '/patients'))) | |
| 260 self.assertEqual(0, len(DoGet(_REMOTE, '/studies'))) | |
| 261 self.assertEqual(0, len(DoGet(_REMOTE, '/series'))) | |
| 262 self.assertEqual(0, len(DoGet(_REMOTE, '/instances'))) | |
| 263 self.assertEqual(None, r) | |
| 264 | |
| 265 DropOrthanc(_REMOTE) | |
| 266 self.assertEqual('0', DoGet(_REMOTE, '/statistics')['TotalDiskSize']) | |
| 267 self.assertEqual('0', DoGet(_REMOTE, '/statistics')['TotalUncompressedSize']) | |
| 7 | 268 |
| 269 | |
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270 def test_multiframe(self): |
| 7 | 271 i = UploadInstance(_REMOTE, 'Multiframe.dcm')['ID'] |
| 272 self.assertEqual(76, len(DoGet(_REMOTE, '/instances/%s/frames' % i))) | |
| 273 | |
| 274 im = GetImage(_REMOTE, '/instances/%s/frames/0/preview' % i) | |
| 275 self.assertEqual("L", im.mode) | |
| 276 self.assertEqual(512, im.size[0]) | |
| 277 self.assertEqual(512, im.size[1]) | |
| 278 | |
| 279 DoGet(_REMOTE, '/instances/%s/frames/0/image-uint8' % i) | |
| 280 DoGet(_REMOTE, '/instances/%s/frames/0/image-uint16' % i) | |
| 281 DoGet(_REMOTE, '/instances/%s/frames/75/preview' % i) | |
| 282 self.assertRaises(Exception, lambda: DoGet(_REMOTE, '/instances/%s/frames/aaa/preview' % i)) | |
| 283 self.assertRaises(Exception, lambda: DoGet(_REMOTE, '/instances/%s/frames/76/preview' % i)) | |
| 284 | |
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285 |
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286 def test_changes(self): |
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287 # Check emptiness |
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288 c = DoGet(_REMOTE, '/changes') |
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289 self.assertEqual(0, len(c['Changes'])) |
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290 self.assertEqual(0, c['Last']) |
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291 self.assertTrue(c['Done']) |
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292 c = DoGet(_REMOTE, '/changes?last') |
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293 self.assertEqual(0, len(c['Changes'])) |
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294 self.assertEqual(0, c['Last']) |
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295 self.assertTrue(c['Done']) |
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296 |
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297 # Add 1 instance |
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298 i = UploadInstance(_REMOTE, 'Brainix/Flair/IM-0001-0001.dcm')['ID'] |
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299 c = DoGet(_REMOTE, '/changes') |
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300 begin = c['Last'] |
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301 self.assertEqual(4, len(c['Changes'])) |
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302 self.assertTrue(c['Done']) |
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303 self.assertEqual(c['Changes'][-1]['Seq'], c['Last']) |
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304 |
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305 c = DoGet(_REMOTE, '/changes?last') |
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306 self.assertEqual(1, len(c['Changes'])) |
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307 self.assertEqual(begin, c['Last']) |
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308 self.assertTrue(c['Done']) |
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309 c = DoGet(_REMOTE, '/changes?limit=1&since=' + str(begin - 1)) |
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310 self.assertEqual(1, len(c['Changes'])) |
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311 self.assertEqual(begin, c['Last']) |
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312 self.assertTrue(c['Done']) |
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313 c = DoGet(_REMOTE, '/changes?limit=1&since=' + str(begin - 2)) |
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314 self.assertEqual(1, len(c['Changes'])) |
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315 self.assertEqual(begin - 1, c['Last']) |
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316 self.assertFalse(c['Done']) |
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317 c = DoGet(_REMOTE, '/changes?limit=1&since=' + str(begin - 3)) |
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318 self.assertEqual(1, len(c['Changes'])) |
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319 self.assertEqual(begin - 2, c['Last']) |
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320 self.assertFalse(c['Done']) |
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321 |
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322 UploadFolder(_REMOTE, 'Knee/T1') |
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323 UploadFolder(_REMOTE, 'Knee/T2') |
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324 since = begin |
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325 countPatients = 0 |
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326 countStudies = 0 |
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327 countSeries = 0 |
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328 countInstances = 0 |
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329 completed = 0 |
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330 while True: |
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331 c = DoGet(_REMOTE, '/changes', { 'since' : since, 'limit' : 3 }) |
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332 since = c['Last'] |
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333 for i in c['Changes']: |
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334 if i['ResourceType'] == 'Instance': |
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335 countInstances += 1 |
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336 if i['ResourceType'] == 'Patient': |
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337 countPatients += 1 |
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338 if i['ResourceType'] == 'Study': |
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339 countStudies += 1 |
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340 if i['ResourceType'] == 'Series': |
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341 countSeries += 1 |
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342 if i['ChangeType'] == 'NewInstance': |
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343 countInstances += 1 |
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344 if i['ChangeType'] == 'NewPatient': |
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345 countPatients += 1 |
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346 if i['ChangeType'] == 'NewStudy': |
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347 countStudies += 1 |
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348 if i['ChangeType'] == 'NewSeries': |
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349 countSeries += 1 |
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350 if i['ChangeType'] == 'CompletedSeries': |
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351 completed += 1 |
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352 self.assertTrue('ID' in i) |
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353 self.assertTrue('Path' in i) |
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354 self.assertTrue('Seq' in i) |
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355 if c['Done']: |
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356 break |
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|
357 |
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358 self.assertEqual(2 * 50, countInstances) |
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359 self.assertEqual(2 * 1, countPatients) |
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360 self.assertEqual(2 * 1, countStudies) |
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361 self.assertEqual(2 * 2, countSeries) |
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362 self.assertEqual(0, completed) |
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|
363 |
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|
364 |
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365 def test_archive(self): |
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366 UploadInstance(_REMOTE, 'Knee/T1/IM-0001-0001.dcm') |
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367 UploadInstance(_REMOTE, 'Knee/T2/IM-0001-0001.dcm') |
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368 |
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369 z = GetArchive(_REMOTE, '/patients/%s/archive' % DoGet(_REMOTE, '/patients')[0]) |
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370 self.assertEqual(2, len(z.namelist())) |
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changeset
|
371 |
|
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|
372 z = GetArchive(_REMOTE, '/studies/%s/archive' % DoGet(_REMOTE, '/studies')[0]) |
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373 self.assertEqual(2, len(z.namelist())) |
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|
374 |
|
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375 z = GetArchive(_REMOTE, '/series/%s/archive' % DoGet(_REMOTE, '/series')[0]) |
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376 self.assertEqual(1, len(z.namelist())) |
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|
377 |
|
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378 UploadInstance(_REMOTE, 'Brainix/Flair/IM-0001-0001.dcm') |
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changeset
|
379 |
|
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380 z = GetArchive(_REMOTE, '/patients/%s/archive' % DoGet(_REMOTE, '/patients')[0]) |
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381 self.assertEqual(2, len(z.namelist())) |
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changeset
|
382 |
|
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changeset
|
383 |
|
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|
384 def test_media_archive(self): |
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385 UploadInstance(_REMOTE, 'Knee/T1/IM-0001-0001.dcm') |
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|
386 UploadInstance(_REMOTE, 'Knee/T2/IM-0001-0001.dcm') |
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changeset
|
387 |
|
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changeset
|
388 z = GetArchive(_REMOTE, '/patients/%s/media' % DoGet(_REMOTE, '/patients')[0]) |
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389 self.assertEqual(3, len(z.namelist())) |
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390 self.assertTrue('IMAGES/IM0' in z.namelist()) |
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391 self.assertTrue('IMAGES/IM1' in z.namelist()) |
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392 self.assertTrue('DICOMDIR' in z.namelist()) |
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changeset
|
393 |
|
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test_changes, test_archive, test_media_archive
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diff
changeset
|
394 try: |
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changeset
|
395 os.remove('/tmp/DICOMDIR') |
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changeset
|
396 except: |
|
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changeset
|
397 # The file does not exist |
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changeset
|
398 pass |
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changeset
|
399 |
|
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changeset
|
400 z.extract('DICOMDIR', '/tmp') |
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changeset
|
401 a = subprocess.check_output([ 'dciodvfy', '/tmp/DICOMDIR' ], |
|
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changeset
|
402 stderr = subprocess.STDOUT).split('\n') |
|
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changeset
|
403 self.assertEqual(3, len(a)) |
|
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changeset
|
404 self.assertTrue(a[0].startswith('Warning')) |
|
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changeset
|
405 self.assertEqual('BasicDirectory', a[1]) |
|
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406 self.assertEqual('', a[2]) |
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407 |
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408 a = subprocess.check_output([ 'dcentvfy', '/tmp/DICOMDIR' ], |
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409 stderr = subprocess.STDOUT).split('\n') |
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410 self.assertEqual(1, len(a)) |
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411 self.assertEqual('', a[0]) |
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412 |
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413 a = subprocess.check_output([ 'dcm2xml', '/tmp/DICOMDIR' ]) |
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414 self.assertTrue(re.search('1.3.46.670589.11.17521.5.0.3124.2008081908590448738', a) != None) |
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415 self.assertTrue(re.search('1.3.46.670589.11.17521.5.0.3124.2008081909113806560', a) != None) |
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416 |
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417 os.remove('/tmp/DICOMDIR') |
| 10 | 418 |
| 419 | |
| 420 def test_protection(self): | |
| 421 UploadInstance(_REMOTE, 'Knee/T1/IM-0001-0001.dcm') | |
| 422 UploadInstance(_REMOTE, 'Brainix/Flair/IM-0001-0001.dcm') | |
| 423 self.assertEqual(2, len(DoGet(_REMOTE, '/patients'))) | |
| 424 a = DoGet(_REMOTE, '/patients')[0] | |
| 425 b = DoGet(_REMOTE, '/patients')[1] | |
| 426 self.assertEqual(0, DoGet(_REMOTE, '/patients/%s/protected' % a)) | |
| 427 DoPut(_REMOTE, '/patients/%s/protected' % a, '0', 'text/plain') | |
| 428 self.assertEqual(0, DoGet(_REMOTE, '/patients/%s/protected' % a)) | |
| 429 DoPut(_REMOTE, '/patients/%s/protected' % a, '1', 'text/plain') | |
| 430 self.assertEqual(1, DoGet(_REMOTE, '/patients/%s/protected' % a)) | |
| 431 DoPut(_REMOTE, '/patients/%s/protected' % a, '0', 'text/plain') | |
| 432 self.assertEqual(0, DoGet(_REMOTE, '/patients/%s/protected' % a)) | |
| 433 | |
| 434 | |
| 12 | 435 def test_raw_tags(self): |
| 10 | 436 i = UploadInstance(_REMOTE, 'PrivateTags.dcm')['ID'] |
| 437 | |
| 438 dicom = DoGet(_REMOTE, '/instances/%s/file' % i) | |
| 439 self.assertEqual('1a7c56cb02d6e742cc9c856a8ac182e3', ComputeMD5(dicom)) | |
| 440 | |
| 441 s = '/instances/%s/content/' % i | |
| 442 | |
| 443 self.assertEqual('LOGIQBOOK', DoGet(_REMOTE, s + '0008-1010').strip()) | |
| 444 self.assertRaises(Exception, lambda: DoGet(_REMOTE, s + '0008-1011')) | |
| 445 | |
| 446 self.assertEqual('Abdomen', DoGet(_REMOTE, s + '7fe1-1001/0/7fe1-1008/0/7fe1-1057').strip()) | |
| 447 self.assertEqual('cla_3c', DoGet(_REMOTE, s + '7fe1-1001/0/7fe1-1008/8/7fe1-1057').strip()) | |
| 448 | |
| 449 UploadInstance(_REMOTE, 'Brainix/Epi/IM-0001-0001.dcm') | |
| 450 UploadInstance(_REMOTE, 'Brainix/Flair/IM-0001-0001.dcm') | |
| 451 UploadInstance(_REMOTE, 'Knee/T1/IM-0001-0001.dcm') | |
| 452 UploadInstance(_REMOTE, 'Knee/T2/IM-0001-0001.dcm') | |
| 453 | |
| 454 for i in DoGet(_REMOTE, '/instances'): | |
| 455 aid = DoGet(_REMOTE, '/instances/%s' % i)['MainDicomTags']['SOPInstanceUID'] | |
| 456 self.assertEqual(aid, DoGet(_REMOTE, '/instances/%s/content/0008-0018' % i).replace(chr(0), '')) | |
| 457 | |
| 458 | |
| 459 def test_raw_tags_mdn(self): | |
| 460 # Bug reported by Cyril Paulus | |
| 461 i = UploadInstance(_REMOTE, 'PrivateMDNTags.dcm')['ID'] | |
| 462 self.assertAlmostEqual(0.000027, DoGet(_REMOTE, '/instances/%s/content/7053-1000' % i)) | |
| 463 | |
| 464 | |
| 465 def test_modify_instance(self): | |
| 466 i = UploadInstance(_REMOTE, 'PrivateTags.dcm')['ID'] | |
| 467 modified = DoPost(_REMOTE, '/instances/%s/modify' % i, | |
| 468 json.dumps({ | |
| 469 "Replace" : { | |
| 470 "PatientName" : "hello", | |
| 471 #"PatientID" : "world" | |
| 472 }, | |
| 473 "Remove" : [ "StationName" ], | |
| 474 "RemovePrivateTags" : None | |
| 475 }), | |
| 476 'application/json') | |
| 477 j = DoPost(_REMOTE, '/instances', modified, 'application/dicom')['ID'] | |
| 478 | |
| 479 self.assertNotEqual('hello', DoGet(_REMOTE, '/instances/%s/content/0010-0010' % i).strip()) | |
| 480 #self.assertNotEqual('world', DoGet(_REMOTE, '/instances/%s/content/0010-0020' % i).strip()) | |
| 481 self.assertEqual('LOGIQBOOK', DoGet(_REMOTE, '/instances/%s/content/0008-1010' % i).strip()) | |
| 482 DoGet(_REMOTE, '/instances/%s/content/6003-1010' % i) # Some private tag | |
| 483 | |
| 484 self.assertEqual('hello', DoGet(_REMOTE, '/instances/%s/content/0010-0010' % j).strip()) | |
| 485 #self.assertEqual('world', DoGet(_REMOTE, '/instances/%s/content/0010-0020' % j).strip()) | |
| 486 self.assertRaises(Exception, lambda: DoGet(_REMOTE, '/instances/%s/content/0008-1010' % j)) | |
| 487 self.assertRaises(Exception, lambda: DoGet(_REMOTE, '/instances/%s/content/6003-1010' % j)) | |
| 488 | |
| 489 | |
| 490 def test_modify_series(self): | |
| 491 # Upload 4 images from the same series | |
| 492 for i in range(4): | |
| 493 UploadInstance(_REMOTE, 'Brainix/Epi/IM-0001-000%d.dcm' % (i + 1)) | |
| 494 | |
| 495 origSeries = DoGet(_REMOTE, '/series')[0] | |
| 496 newSeries = DoPost(_REMOTE, '/series/%s/modify' % origSeries, | |
| 497 '{"Replace":{"PatientName":"Jodogne"}}', | |
| 498 'application/json')['ID'] | |
| 499 | |
| 500 self.assertEqual(origSeries, DoGet(_REMOTE, '/series/%s' % newSeries)['ModifiedFrom']) | |
| 501 instances = DoGet(_REMOTE, '/series/%s' % newSeries)['Instances'] | |
| 502 self.assertEqual(4, len(instances)) | |
| 503 for i in instances: | |
| 504 j = DoGet(_REMOTE, '/instances/%s' % i)['ModifiedFrom'] | |
| 505 self.assertEqual(newSeries, DoGet(_REMOTE, '/instances/%s' % i)['ParentSeries']) | |
| 506 self.assertEqual(origSeries, DoGet(_REMOTE, '/instances/%s' % j)['ParentSeries']) | |
| 507 | |
| 508 self.assertEqual('Jodogne', DoGet(_REMOTE, '/instances/%s/content/0010-0010' % i).strip()) | |
| 509 self.assertNotEqual('Jodogne', DoGet(_REMOTE, '/instances/%s/content/0010-0010' % j).strip()) | |
| 510 | |
| 511 | |
| 512 def test_modify_study(self): | |
| 513 # Upload 4 images from the 2 series of the same study | |
| 514 for i in range(4): | |
| 515 UploadInstance(_REMOTE, 'Brainix/Flair/IM-0001-000%d.dcm' % (i + 1)) | |
| 516 UploadInstance(_REMOTE, 'Brainix/Epi/IM-0001-000%d.dcm' % (i + 1)) | |
| 517 | |
| 518 origStudy = DoGet(_REMOTE, '/studies')[0] | |
| 519 newStudy = DoPost(_REMOTE, '/studies/%s/modify' % origStudy, | |
| 520 '{"Replace":{"PatientName":"Jodogne"}}', | |
| 521 'application/json')['ID'] | |
| 522 | |
| 523 self.assertEqual(origStudy, DoGet(_REMOTE, '/studies/%s' % newStudy)['ModifiedFrom']) | |
| 524 series = DoGet(_REMOTE, '/studies/%s' % newStudy)['Series'] | |
| 525 self.assertEqual(2, len(series)) | |
| 526 for s in series: | |
| 527 ss = DoGet(_REMOTE, '/series/%s' % s)['ModifiedFrom'] | |
| 528 self.assertEqual(newStudy, DoGet(_REMOTE, '/series/%s' % s)['ParentStudy']) | |
| 529 self.assertEqual(origStudy, DoGet(_REMOTE, '/series/%s' % ss)['ParentStudy']) | |
| 530 | |
| 531 instances = DoGet(_REMOTE, '/series/%s' % s)['Instances'] | |
| 532 for i in instances: | |
| 533 j = DoGet(_REMOTE, '/instances/%s' % i)['ModifiedFrom'] | |
| 534 self.assertEqual(s, DoGet(_REMOTE, '/instances/%s' % i)['ParentSeries']) | |
| 535 self.assertEqual(ss, DoGet(_REMOTE, '/instances/%s' % j)['ParentSeries']) | |
| 536 | |
| 537 self.assertEqual('Jodogne', DoGet(_REMOTE, '/instances/%s/content/0010-0010' % i).strip()) | |
| 538 self.assertNotEqual('Jodogne', DoGet(_REMOTE, '/instances/%s/content/0010-0010' % j).strip()) | |
| 539 | |
| 540 | |
| 541 def test_anonymize_series(self): | |
| 542 # Upload 4 images from the same series | |
| 543 for i in range(4): | |
| 544 UploadInstance(_REMOTE, 'Brainix/Epi/IM-0001-000%d.dcm' % (i + 1)) | |
| 545 | |
| 546 origSeries = DoGet(_REMOTE, '/series')[0] | |
| 547 newSeries = DoPost(_REMOTE, '/series/%s/anonymize' % origSeries, | |
| 548 '{}', | |
| 549 'application/json')['ID'] | |
| 550 | |
| 551 self.assertEqual(origSeries, DoGet(_REMOTE, '/series/%s' % newSeries)['AnonymizedFrom']) | |
| 552 instances = DoGet(_REMOTE, '/series/%s' % newSeries)['Instances'] | |
| 553 self.assertEqual(4, len(instances)) | |
| 554 for i in instances: | |
| 555 j = DoGet(_REMOTE, '/instances/%s' % i)['AnonymizedFrom'] | |
| 556 self.assertEqual(newSeries, DoGet(_REMOTE, '/instances/%s' % i)['ParentSeries']) | |
| 557 self.assertEqual(origSeries, DoGet(_REMOTE, '/instances/%s' % j)['ParentSeries']) | |
| 558 | |
| 559 DoGet(_REMOTE, '/instances/%s/content/0008-1010' % j) | |
| 560 self.assertRaises(Exception, lambda: DoGet(_REMOTE, '/instances/%s/content/0008-1010' % i)) | |
| 561 | |
| 562 | |
| 563 def test_anonymize_study(self): | |
| 564 # Upload 4 images from the 2 series of the same study | |
| 565 for i in range(4): | |
| 566 UploadInstance(_REMOTE, 'Brainix/Flair/IM-0001-000%d.dcm' % (i + 1)) | |
| 567 UploadInstance(_REMOTE, 'Brainix/Epi/IM-0001-000%d.dcm' % (i + 1)) | |
| 568 | |
| 569 origStudy = DoGet(_REMOTE, '/studies')[0] | |
| 570 newStudy = DoPost(_REMOTE,'/studies/%s/anonymize' % origStudy, | |
| 571 '{"Replace":{"PatientName":"Jodogne"}}', | |
| 572 'application/json')['ID'] | |
| 573 | |
| 574 self.assertEqual(origStudy, DoGet(_REMOTE, '/studies/%s' % newStudy)['AnonymizedFrom']) | |
| 575 series = DoGet(_REMOTE, '/studies/%s' % newStudy)['Series'] | |
| 576 self.assertEqual(2, len(series)) | |
| 577 for s in series: | |
| 578 ss = DoGet(_REMOTE, '/series/%s' % s)['AnonymizedFrom'] | |
| 579 self.assertEqual(newStudy, DoGet(_REMOTE, '/series/%s' % s)['ParentStudy']) | |
| 580 self.assertEqual(origStudy, DoGet(_REMOTE, '/series/%s' % ss)['ParentStudy']) | |
| 581 | |
| 582 instances = DoGet(_REMOTE, '/series/%s' % s)['Instances'] | |
| 583 for i in instances: | |
| 584 j = DoGet(_REMOTE, '/instances/%s' % i)['AnonymizedFrom'] | |
| 585 self.assertEqual(s, DoGet(_REMOTE, '/instances/%s' % i)['ParentSeries']) | |
| 586 self.assertEqual(ss, DoGet(_REMOTE, '/instances/%s' % j)['ParentSeries']) | |
| 587 | |
| 588 self.assertEqual('Jodogne', DoGet(_REMOTE, '/instances/%s/content/0010-0010' % i).strip()) | |
| 589 self.assertNotEqual('Jodogne', DoGet(_REMOTE, '/instances/%s/content/0010-0010' % j).strip()) | |
| 11 | 590 |
| 591 | |
| 592 | |
| 593 def test_storescu(self): | |
| 594 # Check emptiness | |
| 595 e = DoGet(_REMOTE, '/exports') | |
| 596 self.assertEqual(0, len(e['Exports'])) | |
| 597 self.assertEqual(0, e['Last']) | |
| 598 self.assertTrue(e['Done']) | |
| 599 e = DoGet(_REMOTE, '/exports?last') | |
| 600 self.assertEqual(0, len(e['Exports'])) | |
| 601 self.assertEqual(0, e['Last']) | |
| 602 self.assertTrue(e['Done']) | |
| 603 | |
| 604 # Add 1 instance | |
| 605 i = UploadInstance(_REMOTE, 'DummyCT.dcm')['ID'] | |
| 606 self.assertEqual(0, len(DoGet(_LOCAL, '/patients'))) | |
| 607 | |
| 608 # Export the instance | |
| 609 j = DoPost(_REMOTE, '/modalities/orthanctest/store', str(i), 'text/plain') # instance | |
| 610 self.assertEqual(1, len(DoGet(_LOCAL, '/patients'))) | |
| 611 self.assertEqual(1, len(DoGet(_LOCAL, '/studies'))) | |
| 612 self.assertEqual(1, len(DoGet(_LOCAL, '/series'))) | |
| 613 self.assertEqual(1, len(DoGet(_LOCAL, '/instances'))) | |
| 614 | |
| 615 e = DoGet(_REMOTE, '/exports') | |
| 616 self.assertEqual(1, len(e['Exports'])) | |
| 617 self.assertTrue(e['Done']) | |
| 618 self.assertEqual(e['Exports'][-1]['Seq'], e['Last']) | |
| 619 e = DoGet(_REMOTE, '/exports?limit=1') | |
| 620 self.assertEqual(1, len(e['Exports'])) | |
| 621 self.assertTrue(e['Done']) | |
| 622 self.assertEqual(e['Exports'][-1]['Seq'], e['Last']) | |
| 623 e = DoGet(_REMOTE, '/exports?last') | |
| 624 self.assertEqual(1, len(e['Exports'])) | |
| 625 self.assertTrue(e['Done']) | |
| 626 self.assertEqual(e['Exports'][-1]['Seq'], e['Last']) | |
| 627 seqInstance = e['Last'] | |
| 628 | |
| 629 # Export the series | |
| 630 j = DoPost(_REMOTE, '/modalities/orthanctest/store', 'f2635388-f01d497a-15f7c06b-ad7dba06-c4c599fe', 'text/plain') | |
| 631 | |
| 632 e = DoGet(_REMOTE, '/exports') | |
| 633 self.assertEqual(2, len(e['Exports'])) | |
| 634 self.assertTrue(e['Done']) | |
| 635 self.assertEqual(e['Exports'][-1]['Seq'], e['Last']) | |
| 636 seqSeries = e['Last'] | |
| 637 self.assertNotEqual(seqInstance, seqSeries) | |
| 638 e = DoGet(_REMOTE, '/exports?limit=1&since=0') | |
| 639 self.assertEqual(1, len(e['Exports'])) | |
| 640 self.assertFalse(e['Done']) | |
| 641 self.assertEqual(e['Exports'][-1]['Seq'], seqInstance) | |
| 642 e = DoGet(_REMOTE, '/exports?limit=1&since=' + str(seqInstance)) | |
| 643 self.assertEqual(1, len(e['Exports'])) | |
| 644 self.assertTrue(e['Done']) | |
| 645 self.assertEqual(e['Exports'][-1]['Seq'], seqSeries) | |
| 646 e = DoGet(_REMOTE, '/exports?last') | |
| 647 self.assertEqual(1, len(e['Exports'])) | |
| 648 self.assertTrue(e['Done']) | |
| 649 self.assertEqual(e['Exports'][-1]['Seq'], seqSeries) | |
| 650 | |
| 651 # Export the study | |
| 652 j = DoPost(_REMOTE, '/modalities/orthanctest/store', 'b9c08539-26f93bde-c81ab0d7-bffaf2cb-a4d0bdd0', 'text/plain') | |
| 653 seqStudy = DoGet(_REMOTE, '/exports')['Last'] | |
| 654 | |
| 655 # Export the patient | |
| 656 j = DoPost(_REMOTE, '/modalities/orthanctest/store', '6816cb19-844d5aee-85245eba-28e841e6-2414fae2', 'text/plain') | |
| 657 self.assertEqual(1, len(DoGet(_LOCAL, '/patients'))) | |
| 658 self.assertEqual(1, len(DoGet(_LOCAL, '/studies'))) | |
| 659 self.assertEqual(1, len(DoGet(_LOCAL, '/series'))) | |
| 660 self.assertEqual(1, len(DoGet(_LOCAL, '/instances'))) | |
| 661 | |
| 662 e = DoGet(_REMOTE, '/exports') | |
| 663 self.assertEqual(4, len(e['Exports'])) | |
| 664 self.assertTrue(e['Done']) | |
| 665 self.assertEqual(e['Exports'][-1]['Seq'], e['Last']) | |
| 666 seqPatient = e['Last'] | |
| 667 self.assertNotEqual(seqInstance, seqSeries) | |
| 668 self.assertNotEqual(seqSeries, seqStudy) | |
| 669 self.assertNotEqual(seqStudy, seqPatient) | |
| 670 self.assertTrue(seqInstance < seqSeries) | |
| 671 self.assertTrue(seqSeries < seqStudy) | |
| 672 self.assertTrue(seqStudy < seqPatient) | |
| 673 e = DoGet(_REMOTE, '/exports?limit=1&since=0') | |
| 674 self.assertEqual(1, len(e['Exports'])) | |
| 675 self.assertFalse(e['Done']) | |
| 676 self.assertEqual(e['Exports'][-1]['Seq'], seqInstance) | |
| 677 e = DoGet(_REMOTE, '/exports?limit=1&since=' + str(seqInstance)) | |
| 678 self.assertEqual(1, len(e['Exports'])) | |
| 679 self.assertFalse(e['Done']) | |
| 680 self.assertEqual(e['Exports'][-1]['Seq'], seqSeries) | |
| 681 e = DoGet(_REMOTE, '/exports?limit=1&since=' + str(seqSeries)) | |
| 682 self.assertEqual(1, len(e['Exports'])) | |
| 683 self.assertFalse(e['Done']) | |
| 684 self.assertEqual(e['Exports'][-1]['Seq'], seqStudy) | |
| 685 e = DoGet(_REMOTE, '/exports?limit=1&since=' + str(seqStudy)) | |
| 686 self.assertEqual(1, len(e['Exports'])) | |
| 687 self.assertTrue(e['Done']) | |
| 688 self.assertEqual(e['Exports'][-1]['Seq'], seqPatient) | |
| 689 e = DoGet(_REMOTE, '/exports?last') | |
| 690 self.assertEqual(1, len(e['Exports'])) | |
| 691 self.assertTrue(e['Done']) | |
| 692 self.assertEqual(e['Exports'][-1]['Seq'], seqPatient) | |
| 693 | |
| 694 | |
| 695 # Check the content of the logged information | |
| 696 e = DoGet(_REMOTE, '/exports')['Exports'] | |
| 697 | |
| 698 if 'PatientID' in e[0]: | |
| 699 # Since Orthanc 0.8.6 | |
| 700 patient = 'PatientID' | |
| 701 study = 'StudyInstanceUID' | |
| 702 series = 'SeriesInstanceUID' | |
| 703 instance = 'SOPInstanceUID' | |
| 704 else: | |
| 705 # Up to Orthanc 0.8.5 | |
| 706 patient = 'PatientId' | |
| 707 study = 'StudyInstanceUid' | |
| 708 series = 'SeriesInstanceUid' | |
| 709 instance = 'SopInstanceUid' | |
| 710 | |
| 711 for k in range(4): | |
| 712 self.assertTrue('Date' in e[k]) | |
| 713 self.assertTrue('Seq' in e[k]) | |
| 714 self.assertEqual('orthanctest', e[k]['RemoteModality']) | |
| 715 | |
| 716 self.assertEqual(10, len(e[0])) | |
| 717 self.assertEqual('Instance', e[0]['ResourceType']) | |
| 718 self.assertEqual('66a662ce-7430e543-bad44d47-0dc5a943-ec7a538d', e[0]['ID']) | |
| 719 self.assertEqual('/instances/66a662ce-7430e543-bad44d47-0dc5a943-ec7a538d', e[0]['Path']) | |
| 720 self.assertEqual('1.2.840.113619.2.176.2025.1499492.7040.1171286242.109', e[0][instance]) | |
| 721 self.assertEqual('1.2.840.113619.2.176.2025.1499492.7391.1171285944.394', e[0][series]) | |
| 722 self.assertEqual('1.2.840.113619.2.176.2025.1499492.7391.1171285944.390', e[0][study]) | |
| 723 self.assertEqual('ozp00SjY2xG', e[0][patient]) | |
| 724 | |
| 725 self.assertEqual(9, len(e[1])) | |
| 726 self.assertEqual('Series', e[1]['ResourceType']) | |
| 727 self.assertEqual('f2635388-f01d497a-15f7c06b-ad7dba06-c4c599fe', e[1]['ID']) | |
| 728 self.assertEqual('/series/f2635388-f01d497a-15f7c06b-ad7dba06-c4c599fe', e[1]['Path']) | |
| 729 self.assertEqual('1.2.840.113619.2.176.2025.1499492.7391.1171285944.394', e[1][series]) | |
| 730 self.assertEqual('1.2.840.113619.2.176.2025.1499492.7391.1171285944.390', e[1][study]) | |
| 731 self.assertEqual('ozp00SjY2xG', e[1][patient]) | |
| 732 | |
| 733 self.assertEqual(8, len(e[2])) | |
| 734 self.assertEqual('Study', e[2]['ResourceType']) | |
| 735 self.assertEqual('b9c08539-26f93bde-c81ab0d7-bffaf2cb-a4d0bdd0', e[2]['ID']) | |
| 736 self.assertEqual('/studies/b9c08539-26f93bde-c81ab0d7-bffaf2cb-a4d0bdd0', e[2]['Path']) | |
| 737 self.assertEqual('1.2.840.113619.2.176.2025.1499492.7391.1171285944.390', e[2][study]) | |
| 738 self.assertEqual('ozp00SjY2xG', e[2][patient]) | |
| 739 | |
| 740 self.assertEqual(7, len(e[3])) | |
| 741 self.assertEqual('Patient', e[3]['ResourceType']) | |
| 742 self.assertEqual('6816cb19-844d5aee-85245eba-28e841e6-2414fae2', e[3]['ID']) | |
| 743 self.assertEqual('/patients/6816cb19-844d5aee-85245eba-28e841e6-2414fae2', e[3]['Path']) | |
| 744 self.assertEqual('ozp00SjY2xG', e[3][patient]) | |
| 745 | |
| 746 DropOrthanc(_REMOTE) | |
| 747 self.assertEqual(0, len(DoGet(_REMOTE, '/exports')['Exports'])) | |
| 748 | |
| 749 | |
| 750 def test_store_peer(self): | |
| 751 self.assertEqual(0, len(DoGet(_LOCAL, '/exports')['Exports'])) | |
| 752 self.assertEqual(0, len(DoGet(_REMOTE, '/exports')['Exports'])) | |
| 753 | |
| 754 i = UploadInstance(_REMOTE, 'DummyCT.dcm')['ID'] | |
| 755 self.assertEqual(0, len(DoGet(_LOCAL, '/patients'))) | |
| 756 self.assertEqual(1, len(DoGet(_REMOTE, '/patients'))) | |
| 757 | |
| 758 j = DoPost(_REMOTE, '/peers/peer/store', str(i), 'text/plain') | |
| 759 self.assertEqual(1, len(DoGet(_LOCAL, '/patients'))) | |
| 760 self.assertEqual(1, len(DoGet(_REMOTE, '/patients'))) | |
| 761 | |
| 762 self.assertEqual(1, len(DoGet(_REMOTE, '/exports')['Exports'])) | |
| 763 | |
| 764 DropOrthanc(_REMOTE) | |
| 765 self.assertEqual(0, len(DoGet(_REMOTE, '/exports')['Exports'])) | |
| 766 | |
| 767 | |
| 768 def test_bulk_storescu(self): | |
| 769 self.assertEqual(0, len(DoGet(_LOCAL, '/patients'))) | |
| 770 | |
| 771 a = UploadInstance(_REMOTE, 'Knee/T1/IM-0001-0001.dcm') | |
| 772 b = UploadInstance(_REMOTE, 'Knee/T2/IM-0001-0001.dcm') | |
| 773 | |
| 774 j = DoPost(_REMOTE, '/modalities/orthanctest/store', [ a['ID'], b['ID'] ], 'application/json') | |
| 775 self.assertEqual(2, len(DoGet(_LOCAL, '/instances'))) | |
| 776 | |
| 777 DropOrthanc(_LOCAL) | |
| 778 | |
| 779 # Send using patient's UUID | |
| 780 self.assertEqual(0, len(DoGet(_LOCAL, '/instances'))) | |
| 781 j = DoPost(_REMOTE, '/modalities/orthanctest/store', | |
| 782 [ 'ca29faea-b6a0e17f-067743a1-8b778011-a48b2a17' ], 'application/json') | |
| 783 self.assertEqual(2, len(DoGet(_LOCAL, '/instances'))) | |
| 784 | |
| 785 | |
| 786 def test_color(self): | |
| 787 i = UploadInstance(_REMOTE, 'ColorTestMalaterre.dcm')['ID'] | |
| 788 im = GetImage(_REMOTE, '/instances/%s/preview' % i) | |
| 789 self.assertEqual("RGB", im.mode) | |
| 790 self.assertEqual(41, im.size[0]) | |
| 791 self.assertEqual(41, im.size[1]) | |
| 792 | |
| 793 # http://effbot.org/zone/pil-comparing-images.htm | |
| 13 | 794 truth = Image.open(GetDatabasePath('ColorTestMalaterre.png')) |
| 11 | 795 self.assertTrue(ImageChops.difference(im, truth).getbbox() is None) |
| 796 | |
| 797 | |
| 12 | 798 def test_faking_ruby_put(self): |
| 799 UploadInstance(_REMOTE, 'Knee/T1/IM-0001-0001.dcm') | |
| 800 UploadInstance(_REMOTE, 'Brainix/Flair/IM-0001-0001.dcm') | |
| 801 self.assertEqual(2, len(DoGet(_REMOTE, '/patients'))) | |
| 802 a = DoGet(_REMOTE, '/patients')[0] | |
| 803 b = DoGet(_REMOTE, '/patients')[1] | |
| 804 self.assertEqual(0, DoGet(_REMOTE, '/patients/%s/protected' % a)) | |
| 805 DoGet(_REMOTE, '/patients/%s/protected' % a, data = { '_method' : 'PUT' }, body = '0') | |
| 806 self.assertEqual(0, DoGet(_REMOTE, '/patients/%s/protected' % a)) | |
| 807 DoGet(_REMOTE, '/patients/%s/protected' % a, data = { '_method' : 'PUT' }, body = '1') | |
| 808 self.assertEqual(1, DoGet(_REMOTE, '/patients/%s/protected' % a)) | |
| 809 DoGet(_REMOTE, '/patients/%s/protected' % a, data = { '_method' : 'PUT' }, body = '0') | |
| 810 self.assertEqual(0, DoGet(_REMOTE, '/patients/%s/protected' % a)) | |
| 811 | |
| 812 | |
| 813 def test_faking_ruby_delete(self): | |
| 814 UploadInstance(_REMOTE, 'Knee/T1/IM-0001-0001.dcm') | |
| 815 UploadInstance(_REMOTE, 'Brainix/Flair/IM-0001-0001.dcm') | |
| 816 self.assertEqual(2, len(DoGet(_REMOTE, '/patients'))) | |
| 817 a = DoGet(_REMOTE, '/patients')[0] | |
| 818 b = DoGet(_REMOTE, '/patients')[1] | |
| 819 DoGet(_REMOTE, '/patients/%s' % a, data = { '_method' : 'DELETE' }) | |
| 820 self.assertEqual(1, len(DoGet(_REMOTE, '/patients'))) | |
| 821 DoGet(_REMOTE, '/patients/%s' % b, data = { '_method' : 'DELETE' }) | |
| 822 self.assertEqual(0, len(DoGet(_REMOTE, '/patients'))) | |
| 823 | |
| 824 | |
| 825 def test_faking_google_put(self): | |
| 826 UploadInstance(_REMOTE, 'Knee/T1/IM-0001-0001.dcm') | |
| 827 UploadInstance(_REMOTE, 'Brainix/Flair/IM-0001-0001.dcm') | |
| 828 self.assertEqual(2, len(DoGet(_REMOTE, '/patients'))) | |
| 829 a = DoGet(_REMOTE, '/patients')[0] | |
| 830 b = DoGet(_REMOTE, '/patients')[1] | |
| 831 self.assertEqual(0, DoGet(_REMOTE, '/patients/%s/protected' % a)) | |
| 832 DoPost(_REMOTE, '/patients/%s/protected' % a, headers = { 'X-HTTP-Method-Override' : 'PUT' }, data = '0') | |
| 833 self.assertEqual(0, DoGet(_REMOTE, '/patients/%s/protected' % a)) | |
| 834 DoPost(_REMOTE, '/patients/%s/protected' % a, headers = { 'X-HTTP-Method-Override' : 'PUT' }, data = '1') | |
| 835 self.assertEqual(1, DoGet(_REMOTE, '/patients/%s/protected' % a)) | |
| 836 DoPost(_REMOTE, '/patients/%s/protected' % a, headers = { 'X-HTTP-Method-Override' : 'PUT' }, data = '0') | |
| 837 self.assertEqual(0, DoGet(_REMOTE, '/patients/%s/protected' % a)) | |
| 838 | |
| 839 | |
| 840 def test_faking_google_delete(self): | |
| 841 UploadInstance(_REMOTE, 'Knee/T1/IM-0001-0001.dcm') | |
| 842 UploadInstance(_REMOTE, 'Brainix/Flair/IM-0001-0001.dcm') | |
| 843 self.assertEqual(2, len(DoGet(_REMOTE, '/patients'))) | |
| 844 a = DoGet(_REMOTE, '/patients')[0] | |
| 845 b = DoGet(_REMOTE, '/patients')[1] | |
| 846 DoPost(_REMOTE, '/patients/%s' % a, headers = { 'X-HTTP-Method-Override' : 'DELETE' }) | |
| 847 self.assertEqual(1, len(DoGet(_REMOTE, '/patients'))) | |
| 848 DoPost(_REMOTE, '/patients/%s' % b, headers = { 'X-HTTP-Method-Override' : 'DELETE' }) | |
| 849 self.assertEqual(0, len(DoGet(_REMOTE, '/patients'))) | |
| 850 | |
| 851 | |
| 852 def test_lua(self): | |
| 853 self.assertEqual(42, DoPost(_REMOTE, '/tools/execute-script', 'print(42)')) | |
| 854 self.assertTrue(IsDefinedInLua(_REMOTE, 'PrintRecursive')) | |
| 855 self.assertFalse(IsDefinedInLua(_REMOTE, 'HelloWorld')) | |
| 856 | |
| 857 | |
| 858 def test_metadata(self): | |
| 859 UploadInstance(_REMOTE, 'Knee/T1/IM-0001-0001.dcm') | |
| 860 p = DoGet(_REMOTE, '/patients')[0] | |
| 861 i = DoGet(_REMOTE, '/instances')[0] | |
| 862 | |
| 863 m = DoGet(_REMOTE, '/patients/%s/metadata' % p) | |
| 864 self.assertEqual(1, len(m)) | |
| 865 self.assertEqual('LastUpdate', m[0]) | |
| 866 | |
| 867 m = DoGet(_REMOTE, '/instances/%s/metadata' % i) | |
| 868 self.assertEqual(3, len(m)) | |
| 869 self.assertTrue('IndexInSeries' in m) | |
| 870 self.assertTrue('ReceptionDate' in m) | |
| 871 self.assertTrue('RemoteAET' in m) | |
| 872 | |
| 873 # Play with custom metadata | |
| 874 DoPut(_REMOTE, '/patients/%s/metadata/5555' % p, 'coucou') | |
| 875 m = DoGet(_REMOTE, '/patients/%s/metadata' % p) | |
| 876 self.assertEqual(2, len(m)) | |
| 877 self.assertTrue('LastUpdate' in m) | |
| 878 self.assertTrue('5555' in m) | |
| 879 self.assertEqual('coucou', DoGet(_REMOTE, '/patients/%s/metadata/5555' % p)) | |
| 880 DoPut(_REMOTE, '/patients/%s/metadata/5555' % p, 'hello') | |
| 881 self.assertEqual('hello', DoGet(_REMOTE, '/patients/%s/metadata/5555' % p)) | |
| 882 DoDelete(_REMOTE, '/patients/%s/metadata/5555' % p) | |
| 883 m = DoGet(_REMOTE, '/patients/%s/metadata' % p) | |
| 884 self.assertEqual(1, len(m)) | |
| 885 self.assertTrue('LastUpdate' in m) | |
| 13 | 886 |
| 887 | |
| 888 def test_statistics(self): | |
| 889 # Upload 16 instances | |
| 890 for i in range(4): | |
| 891 UploadInstance(_REMOTE, 'Brainix/Flair/IM-0001-000%d.dcm' % (i + 1)) | |
| 892 UploadInstance(_REMOTE, 'Brainix/Epi/IM-0001-000%d.dcm' % (i + 1)) | |
| 893 UploadInstance(_REMOTE, 'Knee/T1/IM-0001-000%d.dcm' % (i + 1)) | |
| 894 UploadInstance(_REMOTE, 'Knee/T2/IM-0001-000%d.dcm' % (i + 1)) | |
| 895 | |
| 896 s = DoGet(_REMOTE, '/statistics') | |
| 897 self.assertEqual(16, s['CountInstances']) | |
| 898 self.assertEqual(2, s['CountPatients']) | |
| 899 self.assertEqual(2, s['CountStudies']) | |
| 900 self.assertEqual(4, s['CountSeries']) | |
| 901 d = int(s['TotalUncompressedSize']) | |
| 902 | |
| 903 e = 0 | |
| 904 for patient in DoGet(_REMOTE, '/patients'): | |
| 905 s = DoGet(_REMOTE, '/patients/%s/statistics' % patient) | |
| 906 self.assertEqual(8, s['CountInstances']) | |
| 907 self.assertEqual(1, s['CountStudies']) | |
| 908 self.assertEqual(2, s['CountSeries']) | |
| 909 e += int(s['UncompressedSize']) | |
| 910 | |
| 911 for study in DoGet(_REMOTE, '/studies'): | |
| 912 s = DoGet(_REMOTE, '/studies/%s/statistics' % study) | |
| 913 self.assertEqual(8, s['CountInstances']) | |
| 914 self.assertEqual(2, s['CountSeries']) | |
| 915 e += int(s['UncompressedSize']) | |
| 916 | |
| 917 for series in DoGet(_REMOTE, '/series'): | |
| 918 s = DoGet(_REMOTE, '/series/%s/statistics' % series) | |
| 919 self.assertEqual(4, s['CountInstances']) | |
| 920 e += int(s['UncompressedSize']) | |
| 921 | |
| 922 self.assertEqual(3 * d, e) | |
| 923 | |
| 924 | |
| 925 def test_custom_attachment(self): | |
| 926 UploadInstance(_REMOTE, 'Brainix/Flair/IM-0001-0001.dcm') | |
| 927 patient = DoGet(_REMOTE, '/patients')[0] | |
| 928 instance = DoGet(_REMOTE, '/instances')[0] | |
| 929 size = int(DoGet(_REMOTE, '/patients/%s/statistics' % patient)['DiskSize']) | |
| 930 self.assertEqual(size, int(DoGet(_REMOTE, '/statistics')['TotalDiskSize'])) | |
| 931 | |
| 932 self.assertEqual(0, len(DoGet(_REMOTE, '/patients/%s/attachments' % patient))) | |
| 933 self.assertEqual(2, len(DoGet(_REMOTE, '/instances/%s/attachments' % instance))) | |
| 934 self.assertTrue('dicom' in DoGet(_REMOTE, '/instances/%s/attachments' % instance)) | |
| 935 self.assertTrue('dicom-as-json' in DoGet(_REMOTE, '/instances/%s/attachments' % instance)) | |
| 936 | |
| 937 self.assertRaises(Exception, lambda: DoPut(_REMOTE, '/patients/%s/attachments/22' % patient, 'hello')) | |
| 938 hello = 'hellohellohellohellohellohellohellohellohello' | |
| 939 DoPut(_REMOTE, '/patients/%s/attachments/1025' % patient, hello) | |
| 940 self.assertEqual(int(DoGet(_REMOTE, '/patients/%s/statistics' % patient)['DiskSize']), | |
| 941 int(DoGet(_REMOTE, '/statistics')['TotalDiskSize'])) | |
| 942 self.assertEqual(int(DoGet(_REMOTE, '/patients/%s/statistics' % patient)['DiskSize']), | |
| 943 size + int(DoGet(_REMOTE, '/patients/%s/attachments/1025/compressed-size' % patient))) | |
| 944 | |
| 945 DoPut(_REMOTE, '/patients/%s/attachments/1026' % patient, 'world') | |
| 946 self.assertEqual(int(DoGet(_REMOTE, '/patients/%s/statistics' % patient)['DiskSize']), | |
| 947 int(DoGet(_REMOTE, '/statistics')['TotalDiskSize'])) | |
| 948 self.assertEqual(int(DoGet(_REMOTE, '/patients/%s/statistics' % patient)['DiskSize']), | |
| 949 size + | |
| 950 int(DoGet(_REMOTE, '/patients/%s/attachments/1025/compressed-size' % patient)) + | |
| 951 int(DoGet(_REMOTE, '/patients/%s/attachments/1026/compressed-size' % patient))) | |
| 952 | |
| 953 self.assertEqual(2, len(DoGet(_REMOTE, '/patients/%s/attachments' % patient))) | |
| 954 self.assertEqual(hello, DoGet(_REMOTE, '/patients/%s/attachments/1025/data' % patient)) | |
| 955 self.assertEqual('world', DoGet(_REMOTE, '/patients/%s/attachments/1026/data' % patient)) | |
| 956 DoPost(_REMOTE, '/patients/%s/attachments/1025/verify-md5' % patient) | |
| 957 DoPost(_REMOTE, '/patients/%s/attachments/1026/verify-md5' % patient) | |
| 958 DoPut(_REMOTE, '/patients/%s/attachments/1026' % patient, 'world2') | |
| 959 self.assertEqual('world2', DoGet(_REMOTE, '/patients/%s/attachments/1026/data' % patient)) | |
| 960 | |
| 961 self.assertRaises(Exception, lambda: DoDelete(_REMOTE, '/instances/%s/attachments/dicom' % instance)) | |
| 962 DoDelete(_REMOTE, '/patients/%s/attachments/1025' % patient) | |
| 963 self.assertEqual(int(DoGet(_REMOTE, '/patients/%s/statistics' % patient)['DiskSize']), | |
| 964 int(DoGet(_REMOTE, '/statistics')['TotalDiskSize'])) | |
| 965 self.assertEqual(int(DoGet(_REMOTE, '/patients/%s/statistics' % patient)['DiskSize']), | |
| 966 size + int(DoGet(_REMOTE, '/patients/%s/attachments/1026/compressed-size' % patient))) | |
| 967 | |
| 968 self.assertEqual(1, len(DoGet(_REMOTE, '/patients/%s/attachments' % patient))) | |
| 969 DoDelete(_REMOTE, '/patients/%s/attachments/1026' % patient) | |
| 970 self.assertEqual(0, len(DoGet(_REMOTE, '/patients/%s/attachments' % patient))) | |
| 971 | |
| 972 self.assertEqual(int(DoGet(_REMOTE, '/patients/%s/statistics' % patient)['DiskSize']), size) | |
| 973 self.assertEqual(size, int(DoGet(_REMOTE, '/statistics')['TotalDiskSize'])) | |
| 974 | |
| 975 | |
| 976 def test_incoming_storescu(self): | |
| 977 self.assertEqual(0, len(DoGet(_REMOTE, '/patients'))) | |
| 978 subprocess.check_call([ 'storescu', _REMOTE['Server'], str(_REMOTE['DicomPort']), | |
| 979 GetDatabasePath('ColorTestImageJ.dcm') ]) | |
| 980 self.assertEqual(1, len(DoGet(_REMOTE, '/patients'))) | |
| 981 | |
| 982 | |
| 983 def test_incoming_findscu(self): | |
| 984 def CallFindScu(args): | |
| 985 p = subprocess.Popen([ 'findscu', '-P', '-aec', _REMOTE['DicomAet'], '-aet', _LOCAL['DicomAet'], | |
| 986 _REMOTE['Server'], str(_REMOTE['DicomPort']) ] + args, | |
| 987 stderr=subprocess.PIPE) | |
| 988 return p.communicate()[1] | |
| 989 | |
| 990 UploadInstance(_REMOTE, 'Multiframe.dcm') | |
| 991 UploadInstance(_REMOTE, 'ColorTestImageJ.dcm') | |
| 992 | |
| 993 i = CallFindScu([ '-k', '0008,0052=PATIENT', '-k', '0010,0010' ]) | |
| 994 patientNames = re.findall('\(0010,0010\).*?\[(.*?)\]', i) | |
| 995 self.assertEqual(2, len(patientNames)) | |
| 996 self.assertTrue('Test Patient BG ' in patientNames) | |
| 997 self.assertTrue('Anonymized' in patientNames) | |
| 998 | |
| 999 i = CallFindScu([ '-k', '0008,0052=SERIES', '-k', '0008,0021' ]) | |
| 1000 series = re.findall('\(0008,0021\).*?\[\s*(.*?)\s*\]', i) | |
| 1001 self.assertEqual(2, len(series)) | |
| 1002 self.assertTrue('20070208' in series) | |
| 1003 self.assertTrue('19980312' in series) | |
| 1004 | |
| 1005 i = CallFindScu([ '-k', '0008,0052=SERIES', '-k', 'PatientName=Anonymized' ]) | |
| 1006 series = re.findall('\(0010,0010\).*?\[\s*(.*?)\s*\]', i) | |
| 1007 self.assertEqual(1, len(series)) | |
| 1008 | |
| 1009 # Test the "CaseSentitivePN" flag (false by default) | |
| 1010 i = CallFindScu([ '-k', '0008,0052=SERIES', '-k', 'PatientName=anonymized' ]) | |
| 1011 series = re.findall('\(0010,0010\).*?\[\s*(.*?)\s*\]', i) | |
| 1012 self.assertEqual(1, len(series)) | |
| 1013 | |
| 1014 | |
| 1015 def test_incoming_movescu(self): | |
| 1016 def CallMoveScu(args): | |
| 1017 subprocess.check_call([ 'movescu', | |
| 17 | 1018 '--move', _LOCAL['DicomAet'], # Target AET (i.e. storescp) |
| 1019 '--call', _REMOTE['DicomAet'], # Called AET (i.e. Orthanc) | |
| 1020 '--aetitle', _LOCAL['DicomAet'], # Calling AET (i.e. storescp) | |
| 13 | 1021 _REMOTE['Server'], str(_REMOTE['DicomPort']) ] + args, |
| 1022 stderr=subprocess.PIPE) | |
| 1023 | |
| 1024 UploadInstance(_REMOTE, 'Multiframe.dcm') | |
| 1025 | |
| 1026 self.assertEqual(0, len(DoGet(_LOCAL, '/patients'))) | |
| 17 | 1027 CallMoveScu([ '--patient', '-k', '0008,0052=PATIENT', '-k', 'PatientID=none' ]) |
| 13 | 1028 self.assertEqual(0, len(DoGet(_LOCAL, '/patients'))) |
| 1029 CallMoveScu([ '--patient', '-k', '0008,0052=PATIENT', '-k', 'PatientID=12345678' ]) | |
| 1030 self.assertEqual(1, len(DoGet(_LOCAL, '/patients'))) | |
| 1031 | |
| 1032 | |
| 1033 def test_findscu(self): | |
| 1034 i = UploadInstance(_REMOTE, 'DummyCT.dcm')['ID'] | |
| 1035 j = UploadInstance(_REMOTE, 'Issue22.dcm')['ID'] | |
| 1036 k = UploadInstance(_REMOTE, 'ColorTestImageJ.dcm')['ID'] | |
| 1037 DoPost(_REMOTE, '/modalities/orthanctest/store', str(i), 'text/plain') | |
| 1038 | |
| 1039 # Test the "find-patient" level | |
| 1040 p = DoPost(_REMOTE, '/modalities/orthanctest/find-patient', { }) | |
| 1041 self.assertEqual(1, len(p)) | |
| 1042 self.assertEqual('ozp00SjY2xG', p[0]['PatientID']) | |
| 1043 | |
| 1044 # Test wildcards constraints. The "LO" value representation | |
| 1045 # for PatientID is always case-sensitive, but the "PN" for | |
| 1046 # PatientName might depend on the implementation: | |
| 1047 # "GenerateConfigurationForTests.py" will force it to be case | |
| 1048 # insensitive (which was the default until Orthanc 0.8.6). | |
| 1049 p = DoPost(_REMOTE, '/modalities/orthanctest/find-patient', { 'PatientName' : 'K*' }) | |
| 1050 self.assertEqual(1, len(p)) | |
| 1051 | |
| 1052 p = DoPost(_REMOTE, '/modalities/orthanctest/find-patient', { 'PatientName' : 'k*' }) | |
| 1053 self.assertEqual(1, len(p)) | |
| 1054 | |
| 1055 p = DoPost(_REMOTE, '/modalities/orthanctest/find-patient', { 'PatientID' : 'ozp*' }) | |
| 1056 self.assertEqual(1, len(p)) | |
| 1057 | |
| 1058 p = DoPost(_REMOTE, '/modalities/orthanctest/find-patient', { 'PatientID' : 'o?p*' }) | |
| 1059 self.assertEqual(1, len(p)) | |
| 1060 | |
| 1061 p = DoPost(_REMOTE, '/modalities/orthanctest/find-patient', { 'PatientID' : '0?q*' }) | |
| 1062 self.assertEqual(0, len(p)) | |
| 1063 | |
| 1064 p = DoPost(_REMOTE, '/modalities/orthanctest/find-patient', { 'PatientName' : 'B*' }) | |
| 1065 self.assertEqual(0, len(p)) | |
| 1066 | |
| 1067 p = DoPost(_REMOTE, '/modalities/orthanctest/find-patient', { 'PatientName' : 'b*' }) | |
| 1068 self.assertEqual(0, len(p)) | |
| 1069 | |
| 1070 DoPost(_REMOTE, '/modalities/orthanctest/store', str(j), 'text/plain') | |
| 1071 DoPost(_REMOTE, '/modalities/orthanctest/store', str(k), 'text/plain') | |
| 1072 DoPost(_REMOTE, '/modalities/orthanctest/find-patient', { }) | |
| 1073 self.assertEqual(3, len(DoPost(_REMOTE, '/modalities/orthanctest/find-patient', { }))) | |
| 1074 | |
| 1075 p = DoPost(_REMOTE, '/modalities/orthanctest/find-patient', { 'PatientName' : 'A*' }) | |
| 1076 self.assertEqual(2, len(p)) | |
| 1077 | |
| 1078 # Test the "find-study" level. This is the instance "ColorTestImageJ.dcm" | |
| 1079 s = DoPost(_REMOTE, '/modalities/orthanctest/find-study', { 'PatientID' : 'B9uTHKOZ' }) | |
| 1080 self.assertEqual(1, len(s)) | |
| 1081 self.assertEqual('20070208', s[0]['StudyDate']) | |
| 1082 | |
| 1083 # Test range searches | |
| 1084 t = DoPost(_REMOTE, '/modalities/orthanctest/find-study', { 'PatientID' : 'B9uTHKOZ', | |
| 1085 'StudyDate' : '-20070101' }) | |
| 1086 self.assertEqual(0, len(t)) | |
| 1087 | |
| 1088 t = DoPost(_REMOTE, '/modalities/orthanctest/find-study', { 'PatientID' : 'B9uTHKOZ', | |
| 1089 'StudyDate' : '20090101-' }) | |
| 1090 self.assertEqual(0, len(t)) | |
| 1091 | |
| 1092 t = DoPost(_REMOTE, '/modalities/orthanctest/find-study', { 'PatientID' : 'B9uTHKOZ', | |
| 1093 'StudyDate' : '20070101-' }) | |
| 1094 self.assertEqual(1, len(t)) | |
| 1095 | |
| 1096 t = DoPost(_REMOTE, '/modalities/orthanctest/find-study', { 'PatientID' : 'B9uTHKOZ', | |
| 1097 'StudyDate' : '-20090101' }) | |
| 1098 self.assertEqual(1, len(t)) | |
| 1099 | |
| 1100 t = DoPost(_REMOTE, '/modalities/orthanctest/find-study', { 'PatientID' : 'B9uTHKOZ', | |
| 1101 'StudyDate' : '20070207-20070207' }) | |
| 1102 self.assertEqual(0, len(t)) | |
| 1103 | |
| 1104 t = DoPost(_REMOTE, '/modalities/orthanctest/find-study', { 'PatientID' : 'B9uTHKOZ', | |
| 1105 'StudyDate' : '20070208-20070208' }) | |
| 1106 self.assertEqual(1, len(t)) | |
| 1107 | |
| 1108 t = DoPost(_REMOTE, '/modalities/orthanctest/find-study', { 'PatientID' : 'B9uTHKOZ', | |
| 1109 'StudyDate' : '20070209-20070209' }) | |
| 1110 self.assertEqual(0, len(t)) | |
| 1111 | |
| 1112 # Test the ModalitiesInStudy tag | |
| 1113 t = DoPost(_REMOTE, '/modalities/orthanctest/find-study', { | |
| 1114 'PatientID' : 'B9uTHKOZ', | |
| 1115 'ModalitiesInStudy' : 'US' }) | |
| 1116 self.assertEqual(0, len(t)) | |
| 1117 | |
| 1118 t = DoPost(_REMOTE, '/modalities/orthanctest/find-study', { | |
| 1119 'PatientID' : 'B9uTHKOZ', | |
| 1120 'ModalitiesInStudy' : 'CT' }) | |
| 1121 self.assertEqual(1, len(t)) | |
| 1122 | |
| 1123 t = DoPost(_REMOTE, '/modalities/orthanctest/find-study', { | |
| 1124 'PatientID' : 'B9uTHKOZ', | |
| 1125 'ModalitiesInStudy' : 'US\\CT' }) | |
| 1126 self.assertEqual(1, len(t)) | |
| 1127 | |
| 1128 # Test the "find-series" level | |
| 1129 t = DoPost(_REMOTE, '/modalities/orthanctest/find-series', { | |
| 1130 'PatientID' : 'B9uTHKOZ', | |
| 1131 'StudyInstanceUID' : s[0]['StudyInstanceUID'] }) | |
| 1132 self.assertEqual(1, len(t)) | |
| 1133 | |
| 1134 # Test "\" separator | |
| 1135 t = DoPost(_REMOTE, '/modalities/orthanctest/find-series', { | |
| 1136 'PatientID' : 'B9uTHKOZ', | |
| 1137 'StudyInstanceUID' : s[0]['StudyInstanceUID'], | |
| 1138 'Modality' : 'MR\\CT\\US' }) | |
| 1139 self.assertEqual(1, len(t)) | |
| 1140 | |
| 1141 t = DoPost(_REMOTE, '/modalities/orthanctest/find-series', { | |
| 1142 'PatientID' : 'B9uTHKOZ', | |
| 1143 'StudyInstanceUID' : s[0]['StudyInstanceUID'], | |
| 1144 'Modality' : 'MR\\US' }) | |
| 1145 self.assertEqual(0, len(t)) | |
| 1146 | |
| 1147 | |
| 1148 def test_update_modalities(self): | |
| 1149 try: | |
| 1150 DoDelete(_REMOTE, '/modalities/toto') | |
| 1151 except: | |
| 1152 pass | |
| 1153 try: | |
| 1154 DoDelete(_REMOTE, '/modalities/tata') | |
| 1155 except: | |
| 1156 pass | |
| 1157 self.assertRaises(Exception, lambda: DoGet(_REMOTE, '/modalities/toto')) | |
| 1158 DoPut(_REMOTE, '/modalities/toto', [ "STORESCP", "localhost", 2000 ]) | |
| 1159 DoPut(_REMOTE, '/modalities/tata', [ "STORESCP", "localhost", 2000, 'MedInria' ]) | |
| 1160 self.assertRaises(Exception, lambda: DoPut(_REMOTE, '/modalities/toto', [ "STORESCP", "localhost", 2000, 'MedInriaaa' ])) | |
| 1161 self.assertTrue('store' in DoGet(_REMOTE, '/modalities/toto')) | |
| 1162 self.assertTrue('store' in DoGet(_REMOTE, '/modalities/tata')) | |
| 1163 DoDelete(_REMOTE, '/modalities/toto') | |
| 1164 DoDelete(_REMOTE, '/modalities/tata') | |
| 1165 self.assertRaises(Exception, lambda: DoGet(_REMOTE, '/modalities/toto')) | |
| 1166 self.assertRaises(Exception, lambda: DoGet(_REMOTE, '/modalities/tata')) | |
| 1167 | |
| 1168 | |
| 1169 def test_update_peers(self): | |
| 1170 # curl -X PUT http://localhost:8042/peers/toto -d '["http://localhost:8042/"]' -v | |
| 1171 try: | |
| 1172 DoDelete(_REMOTE, '/peers/toto') | |
| 1173 except: | |
| 1174 pass | |
| 1175 try: | |
| 1176 DoDelete(_REMOTE, '/peers/tata') | |
| 1177 except: | |
| 1178 pass | |
| 1179 self.assertRaises(Exception, lambda: DoGet(_REMOTE, '/peers/toto')) | |
| 1180 DoPut(_REMOTE, '/peers/toto', [ 'http://localhost:8042/' ]) | |
| 1181 DoPut(_REMOTE, '/peers/tata', [ 'http://localhost:8042/', 'user', 'pass' ]) | |
| 1182 self.assertRaises(Exception, lambda: DoPut(_REMOTE, '/peers/toto', [ 'http://localhost:8042/', 'a' ])) | |
| 1183 self.assertRaises(Exception, lambda: DoPut(_REMOTE, '/peers/toto', [ 'http://localhost:8042/', 'a', 'b', 'c' ])) | |
| 1184 self.assertTrue('store' in DoGet(_REMOTE, '/peers/toto')) | |
| 1185 self.assertTrue('store' in DoGet(_REMOTE, '/peers/tata')) | |
| 1186 DoDelete(_REMOTE, '/peers/toto') | |
| 1187 DoDelete(_REMOTE, '/peers/tata') | |
| 1188 self.assertRaises(Exception, lambda: DoGet(_REMOTE, '/peers/toto')) | |
| 1189 self.assertRaises(Exception, lambda: DoGet(_REMOTE, '/peers/tata')) | |
| 1190 | |
| 1191 | |
| 1192 def test_mesterhazy_modification(self): | |
| 1193 # When I modify a series ( eg. curl | |
| 1194 # http://localhost:8042/series/uidhere/modify -X POST -d | |
| 1195 # '{"Replace":{"SeriesDate":"19990101"}}' ) the modified | |
| 1196 # series is added to a new Study, instead of the existing | |
| 1197 # Study. Fixed in Orthanc 0.7.5 | |
| 1198 | |
| 1199 u = UploadInstance(_REMOTE, 'DummyCT.dcm') | |
| 1200 study = 'b9c08539-26f93bde-c81ab0d7-bffaf2cb-a4d0bdd0' | |
| 1201 series = 'f2635388-f01d497a-15f7c06b-ad7dba06-c4c599fe' | |
| 1202 | |
| 1203 modified = DoPost(_REMOTE, '/series/%s/modify' % series, | |
| 1204 json.dumps({ "Replace" : { "SeriesDate" : "19990101" }})) | |
| 1205 | |
| 1206 self.assertEqual(study, DoGet(_REMOTE, '/series/%s' % modified['ID']) ['ParentStudy']) | |
| 1207 | |
| 1208 | |
| 1209 def test_create(self): | |
| 1210 i = DoPost(_REMOTE, '/tools/create-dicom', | |
| 1211 json.dumps({ | |
| 1212 'PatientName' : 'Jodogne', | |
| 1213 'Modality' : 'CT', | |
| 1214 'PixelData' : 'data:image/png;base64,iVBORw0KGgoAAAANSUhEUgAAAAUAAAAFCAYAAACNbyblAAAAHElEQVQI12P4//8/w38GIAXDIBKE0DHxgljNBAAO9TXL0Y4OHwAAAABJRU5ErkJggg==' # red dot in RGBA | |
| 1215 })) | |
| 1216 | |
| 1217 self.assertEqual('Jodogne', DoGet(_REMOTE, '/instances/%s/content/PatientName' % i['ID']).strip()) | |
| 1218 self.assertEqual('CT', DoGet(_REMOTE, '/instances/%s/content/Modality' % i['ID']).strip()) | |
| 1219 | |
| 1220 png = GetImage(_REMOTE, '/instances/%s/preview' % i['ID']) | |
| 1221 self.assertEqual((5, 5), png.size) | |
| 1222 | |
| 1223 | |
| 1224 def test_pilates(self): | |
| 1225 # "SCU failed error when accessing orthanc with osirix" by | |
| 1226 # Pilates Agentur (Mar 10, 2014 at 9:33 PM) | |
| 1227 i = UploadInstance(_REMOTE, 'PilatesArgenturGEUltrasoundOsiriX.dcm')['ID'] | |
| 1228 self.assertEqual(0, len(DoGet(_LOCAL, '/patients'))) | |
| 1229 j = DoPost(_REMOTE, '/modalities/orthanctest/store', str(i), 'text/plain') | |
| 1230 self.assertEqual(1, len(DoGet(_LOCAL, '/patients'))) | |
| 1231 | |
| 1232 | |
| 1233 def test_shared_tags(self): | |
| 1234 a = UploadInstance(_REMOTE, 'Knee/T1/IM-0001-0001.dcm')['ID'] | |
| 1235 b = UploadInstance(_REMOTE, 'Knee/T1/IM-0001-0002.dcm')['ID'] | |
| 1236 p = DoGet(_REMOTE, '/patients')[0] | |
| 1237 | |
| 1238 self.assertTrue('0010,0010' in DoGet(_REMOTE, '/patients/%s/shared-tags' % p)) | |
| 1239 self.assertTrue('PatientName' in DoGet(_REMOTE, '/patients/%s/shared-tags?simplify' % p)) | |
| 1240 self.assertTrue('0008,1030' in DoGet(_REMOTE, '/patients/%s/shared-tags' % p)) | |
| 1241 self.assertTrue('StudyDescription' in DoGet(_REMOTE, '/patients/%s/shared-tags?simplify' % p)) | |
| 1242 self.assertTrue('0008,103e' in DoGet(_REMOTE, '/patients/%s/shared-tags' % p)) | |
| 1243 self.assertTrue('SeriesDescription' in DoGet(_REMOTE, '/patients/%s/shared-tags?simplify' % p)) | |
| 1244 self.assertFalse('0008,0018' in DoGet(_REMOTE, '/patients/%s/shared-tags' % p)) | |
| 1245 self.assertFalse('SOPInstanceUID' in DoGet(_REMOTE, '/patients/%s/shared-tags?simplify' % p)) | |
| 1246 | |
| 1247 self.assertTrue('0008,0018' in DoGet(_REMOTE, '/instances/%s/tags' % a)) | |
| 1248 self.assertTrue('SOPInstanceUID' in DoGet(_REMOTE, '/instances/%s/tags?simplify' % a)) | |
| 1249 | |
| 1250 | |
| 1251 def test_modules(self): | |
| 1252 a = UploadInstance(_REMOTE, 'Knee/T1/IM-0001-0001.dcm')['ID'] | |
| 1253 p = DoGet(_REMOTE, '/patients')[0] | |
| 1254 s = DoGet(_REMOTE, '/studies')[0] | |
| 1255 t = DoGet(_REMOTE, '/series')[0] | |
| 1256 | |
| 1257 self.assertTrue('0010,0010' in DoGet(_REMOTE, '/patients/%s/module' % p)) | |
| 1258 self.assertTrue('PatientName' in DoGet(_REMOTE, '/patients/%s/module?simplify' % p)) | |
| 1259 self.assertTrue('0010,0010' in DoGet(_REMOTE, '/studies/%s/module-patient' % p)) | |
| 1260 self.assertTrue('PatientName' in DoGet(_REMOTE, '/studies/%s/module-patient?simplify' % p)) | |
| 1261 self.assertTrue('0008,1030' in DoGet(_REMOTE, '/studies/%s/module' % s)) | |
| 1262 self.assertTrue('StudyDescription' in DoGet(_REMOTE, '/studies/%s/module?simplify' % s)) | |
| 1263 self.assertTrue('0008,103e' in DoGet(_REMOTE, '/series/%s/module' % p)) | |
| 1264 self.assertTrue('SeriesDescription' in DoGet(_REMOTE, '/series/%s/module?simplify' % p)) | |
| 1265 self.assertTrue('0008,0018' in DoGet(_REMOTE, '/instances/%s/module' % a)) | |
| 1266 self.assertTrue('SOPInstanceUID' in DoGet(_REMOTE, '/instances/%s/module?simplify' % a)) | |
| 1267 | |
| 1268 | |
| 1269 def test_auto_directory(self): | |
| 1270 a = UploadInstance(_REMOTE, 'Knee/T1/IM-0001-0001.dcm')['ID'] | |
| 1271 self.assertTrue('now' in DoGet(_REMOTE, '/tools')) | |
| 1272 self.assertTrue('dicom-conformance' in DoGet(_REMOTE, '/tools')) | |
| 1273 self.assertTrue(len(DoGet(_REMOTE, '/tools/dicom-conformance')) > 1000) | |
| 1274 self.assertTrue('orthanctest' in DoGet(_REMOTE, '/modalities')) | |
| 1275 self.assertTrue('echo' in DoGet(_REMOTE, '/modalities/orthanctest')) | |
| 1276 self.assertTrue('find' in DoGet(_REMOTE, '/modalities/orthanctest')) | |
| 1277 self.assertTrue('find-instance' in DoGet(_REMOTE, '/modalities/orthanctest')) | |
| 1278 self.assertTrue('find-patient' in DoGet(_REMOTE, '/modalities/orthanctest')) | |
| 1279 self.assertTrue('find-series' in DoGet(_REMOTE, '/modalities/orthanctest')) | |
| 1280 self.assertTrue('find-study' in DoGet(_REMOTE, '/modalities/orthanctest')) | |
| 1281 self.assertTrue('store' in DoGet(_REMOTE, '/modalities/orthanctest')) | |
| 1282 self.assertTrue('store' in DoGet(_REMOTE, '/peers/peer')) | |
| 1283 self.assertTrue('matlab' in DoGet(_REMOTE, '/instances/%s/frames/0' % a)) | |
| 1284 self.assertRaises(Exception, lambda: DoGet(_REMOTE, '/tools/nope')) | |
| 1285 | |
| 1286 | |
| 1287 def test_echo(self): | |
| 1288 DoPost(_REMOTE, '/modalities/orthanctest/echo') | |
| 1289 | |
| 1290 | |
| 1291 def test_xml(self): | |
| 1292 json = DoGet(_REMOTE, '/tools', headers = { 'accept' : 'application/json' }) | |
| 1293 xml = minidom.parseString(DoGet(_REMOTE, '/tools', headers = { 'accept' : 'application/xml' })) | |
| 1294 items = xml.getElementsByTagName('root')[0].getElementsByTagName('item') | |
| 1295 self.assertEqual(len(items), len(json)) | |
| 1296 | |
| 1297 self.assertTrue('dicom-conformance' in json) | |
| 1298 | |
| 1299 ok = False | |
| 1300 for i in items: | |
| 1301 if i.childNodes[0].data == 'dicom-conformance': | |
| 1302 ok = True | |
| 1303 self.assertTrue(ok) | |
| 1304 | |
| 1305 | |
| 1306 def test_issue_16(self): | |
| 1307 i = UploadInstance(_REMOTE, 'Issue16.dcm')['ID'] | |
| 1308 t = DoGet(_REMOTE, '/instances/%s/tags?simplify' % i)['FrameIncrementPointer'] | |
| 1309 self.assertEqual('0018,1063', t) | |
| 1310 | |
| 1311 | |
| 1312 def test_issue_22(self): | |
| 1313 s = UploadInstance(_REMOTE, 'Issue22.dcm')['ID'] | |
| 1314 a = [ | |
| 1315 "f804691f62197040438f4627c6b994f1", # Frame 0 | |
| 1316 "c69eee9a51eea3e8611e82e578897254", | |
| 1317 "315666be83e2d0111c77bc0996d84901", | |
| 1318 "3e27aa959d911172c48a1436443c72b1", | |
| 1319 "958642c9e7e9d232d3869faff546058c", | |
| 1320 "5e7ea8e3e4230cae707d143481355c59", | |
| 1321 "eda37f83558d858a596175aed8b2ad47", | |
| 1322 "486713bd2895c4ecbe0e97715ac7f80a", | |
| 1323 "091ef729eb169e67da8a0faa9631f9a8", | |
| 1324 "5aa2b8c7ffe0a483efaa8e12417686ca", | |
| 1325 "e2f39e85896fe58876654b94cd0b5013", | |
| 1326 "6fd2129e4950abbe1be053bc814d5da8", | |
| 1327 "c3331a8ba7a757f3d423735ab7fa81f9", | |
| 1328 "746f808582156734dd6b6fdfd3a0b72c", | |
| 1329 "8075ea2b227a70c60ea6b7b75a6bb190", | |
| 1330 "806b8b3e300c615099c11a5ec23465aa", | |
| 1331 "7c836aa298ba6eef96434579af631a11", | |
| 1332 "a0357dc9f4f72d73a885c33d7c287446", | |
| 1333 "f25ba3be1cc7d7fad95706adc199ea7d", | |
| 1334 "8b114c526b8cbed6cad8a3248b7b480c", | |
| 1335 "44e6670f127e612a2b4aa60a0d207698", | |
| 1336 "b8945f90fe02facf2ace24ca1ecbe0a5", | |
| 1337 "95c796c2fa8f59018b15cf2987b1f79b", | |
| 1338 "ce0a51ab30224205b44920221dc27351", # Frame 23 | |
| 1339 ] | |
| 1340 | |
| 1341 self.assertEqual(24, len(DoGet(_REMOTE, '/instances/%s/frames' % s))) | |
| 1342 self.assertRaises(Exception, lambda: DoGet(_REMOTE, '/instances/%s/frames/24/preview' % s)) | |
| 1343 | |
| 1344 for i in range(len(a)): | |
| 1345 self.assertEqual(a[i], ComputeMD5(DoGet(_REMOTE, '/instances/%s/frames/%d/preview' % (s, i)))) | |
| 1346 | |
| 1347 | |
| 1348 def test_issue_19(self): | |
|
21
2a29bcff60a7
tests of image decoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
18
diff
changeset
|
1349 # This is an image with "YBR_FULL" photometric interpretation, it is not supported by Orthanc |
| 13 | 1350 # gdcmconv -i /home/jodogne/DICOM/GdcmDatabase/US_DataSet/HDI5000_US/3EAF5E01 -w -o Issue19.dcm |
| 1351 | |
| 1352 a = UploadInstance(_REMOTE, 'Issue19.dcm')['ID'] | |
|
21
2a29bcff60a7
tests of image decoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
18
diff
changeset
|
1353 self.assertRaises(Exception, lambda: DoGet(_REMOTE, '/instances/941ad3c8-05d05b88-560459f9-0eae0e20-6cddd533/preview')) |
| 13 | 1354 |
| 1355 | |
| 1356 def test_issue_37(self): | |
| 1357 # Same test for issues 35 and 37. Fixed in Orthanc 0.9.1 | |
| 1358 u = UploadInstance(_REMOTE, 'Beaufix/IM-0001-0001.dcm')['ID'] | |
| 1359 | |
| 1360 a = DoPost(_REMOTE, '/tools/find', { 'Level' : 'Series', | |
| 1361 'CaseSensitive' : True, | |
| 1362 'Query' : { 'StationName' : 'SMR4-MP3' }}) | |
| 1363 self.assertEqual(1, len(a)) | |
| 14 | 1364 |
| 1365 | |
| 1366 def test_rest_find(self): | |
| 1367 # Upload 8 instances | |
| 1368 for i in range(2): | |
| 1369 UploadInstance(_REMOTE, 'Brainix/Flair/IM-0001-000%d.dcm' % (i + 1)) | |
| 1370 UploadInstance(_REMOTE, 'Brainix/Epi/IM-0001-000%d.dcm' % (i + 1)) | |
| 1371 UploadInstance(_REMOTE, 'Knee/T1/IM-0001-000%d.dcm' % (i + 1)) | |
| 1372 UploadInstance(_REMOTE, 'Knee/T2/IM-0001-000%d.dcm' % (i + 1)) | |
| 1373 | |
| 1374 a = DoPost(_REMOTE, '/tools/find', { 'Level' : 'Patient', | |
| 1375 'CaseSensitive' : False, | |
| 1376 'Query' : { 'PatientName' : '*n*' }}) | |
| 1377 self.assertEqual(2, len(a)) | |
| 1378 | |
| 1379 a = DoPost(_REMOTE, '/tools/find', { 'Level' : 'Patient', | |
| 1380 'CaseSensitive' : True, | |
| 1381 'Query' : { 'PatientName' : '*n*' }}) | |
| 1382 self.assertEqual(0, len(a)) | |
| 1383 | |
| 1384 a = DoPost(_REMOTE, '/tools/find', { 'Expand' : True, | |
| 1385 'Level' : 'Patient', | |
| 1386 'CaseSensitive' : False, | |
| 1387 'Query' : { 'PatientName' : '*ne*' }}) | |
| 1388 self.assertEqual(1, len(a)) | |
| 1389 self.assertEqual('20080822', a[0]['MainDicomTags']['PatientBirthDate']) | |
| 1390 | |
| 1391 a = DoPost(_REMOTE, '/tools/find', { 'Level' : 'Patient', | |
| 1392 'CaseSensitive' : True, | |
| 1393 'Query' : { 'PatientName' : '*ne*' }}) | |
| 1394 self.assertEqual(0, len(a)) | |
| 1395 | |
| 1396 a = DoPost(_REMOTE, '/tools/find', { 'Level' : 'Study', | |
| 1397 'CaseSensitive' : True, | |
| 1398 'Query' : { 'PatientName' : '*NE*' }}) | |
| 1399 self.assertEqual(1, len(a)) | |
| 1400 | |
| 1401 a = DoPost(_REMOTE, '/tools/find', { 'Level' : 'Series', | |
| 1402 'CaseSensitive' : True, | |
| 1403 'Query' : { 'PatientName' : '*NE*' }}) | |
| 1404 self.assertEqual(2, len(a)) | |
| 1405 | |
| 1406 a = DoPost(_REMOTE, '/tools/find', { 'Level' : 'Instance', | |
| 1407 'CaseSensitive' : True, | |
| 1408 'Query' : { 'PatientName' : '*NE*' }}) | |
| 1409 self.assertEqual(4, len(a)) | |
| 1410 | |
| 1411 a = DoPost(_REMOTE, '/tools/find', { 'Level' : 'Patient', 'Query' : { }}) | |
| 1412 self.assertEqual(2, len(a)) | |
| 1413 | |
| 1414 a = DoPost(_REMOTE, '/tools/find', { 'Level' : 'Study', 'Query' : { }}) | |
| 1415 self.assertEqual(2, len(a)) | |
| 1416 | |
| 1417 a = DoPost(_REMOTE, '/tools/find', { 'Level' : 'Series', 'Query' : { }}) | |
| 1418 self.assertEqual(4, len(a)) | |
| 1419 | |
| 1420 a = DoPost(_REMOTE, '/tools/find', { 'Level' : 'Instance', 'Query' : { }}) | |
| 1421 self.assertEqual(8, len(a)) | |
| 1422 | |
| 1423 | |
| 1424 def test_rest_query_retrieve(self): | |
| 1425 self.assertEqual(0, len(DoGet(_REMOTE, '/patients'))) | |
| 1426 | |
| 1427 # Upload 8 instances | |
| 1428 for i in range(2): | |
| 1429 UploadInstance(_REMOTE, 'Brainix/Flair/IM-0001-000%d.dcm' % (i + 1)) | |
| 1430 UploadInstance(_REMOTE, 'Brainix/Epi/IM-0001-000%d.dcm' % (i + 1)) | |
| 1431 UploadInstance(_REMOTE, 'Knee/T1/IM-0001-000%d.dcm' % (i + 1)) | |
| 1432 UploadInstance(_REMOTE, 'Knee/T2/IM-0001-000%d.dcm' % (i + 1)) | |
| 1433 | |
| 1434 self.assertEqual(2, len(DoGet(_REMOTE, '/patients'))) | |
| 1435 for p in DoGet(_REMOTE, '/patients'): | |
| 1436 DoPost(_REMOTE, '/modalities/orthanctest/store', p) | |
| 1437 DoDelete(_REMOTE, '/patients/%s' % p) | |
| 1438 | |
| 1439 for q in DoGet(_REMOTE, '/queries'): | |
| 1440 DoDelete(_REMOTE, '/queries/%s' % q) | |
| 1441 | |
| 1442 self.assertEqual(0, len(DoGet(_REMOTE, '/patients'))) | |
| 1443 self.assertEqual(0, len(DoGet(_REMOTE, '/queries'))) | |
| 1444 a = DoPost(_REMOTE, '/modalities/orthanctest/query', { 'Level' : 'Series', | |
| 1445 'Query' : { 'PatientName' : '*NE*' }})['ID'] | |
| 1446 self.assertEqual(1, len(DoGet(_REMOTE, '/queries'))) | |
| 1447 | |
| 1448 b = DoGet(_REMOTE, '/queries/%s' % a) | |
| 1449 self.assertTrue('answers' in b) | |
| 1450 self.assertTrue('level' in b) | |
| 1451 self.assertTrue('modality' in b) | |
| 1452 self.assertTrue('query' in b) | |
| 1453 self.assertTrue('retrieve' in b) | |
| 1454 self.assertEqual('Series', DoGet(_REMOTE, '/queries/%s/level' % a)) | |
| 1455 self.assertEqual('orthanctest', DoGet(_REMOTE, '/queries/%s/modality' % a)) | |
| 1456 | |
| 1457 q = DoGet(_REMOTE, '/queries/%s/query?simplify' % a) | |
| 1458 self.assertEqual(1, len(q)) | |
| 1459 self.assertTrue('PatientName' in q) | |
| 1460 self.assertEqual('*NE*', q['PatientName']) | |
| 1461 | |
| 1462 self.assertEqual(2, len(DoGet(_REMOTE, '/queries/%s/answers' % a))) | |
| 1463 | |
| 1464 s = DoGet(_REMOTE, '/queries/%s/answers/0' % a) | |
| 1465 self.assertTrue('content' in s) | |
| 1466 self.assertTrue('retrieve' in s) | |
| 1467 | |
| 1468 s = DoGet(_REMOTE, '/queries/%s/answers/0/content?simplify' % a) | |
| 1469 self.assertEqual('887', s['PatientID']) | |
| 1470 self.assertEqual('2.16.840.1.113669.632.20.121711.10000160881', s['StudyInstanceUID']) | |
| 1471 | |
| 1472 self.assertEqual(0, len(DoGet(_REMOTE, '/patients'))) | |
| 1473 DoPost(_REMOTE, '/queries/%s/answers/0/retrieve' % a, 'ORTHANC') | |
| 1474 self.assertEqual(1, len(DoGet(_REMOTE, '/patients'))) | |
| 1475 self.assertEqual(1, len(DoGet(_REMOTE, '/studies'))) | |
| 1476 self.assertEqual(1, len(DoGet(_REMOTE, '/series'))) | |
| 1477 self.assertEqual(2, len(DoGet(_REMOTE, '/instances'))) | |
| 1478 | |
| 1479 DoPost(_REMOTE, '/queries/%s/answers/1/retrieve' % a, 'ORTHANC') | |
| 1480 self.assertEqual(1, len(DoGet(_REMOTE, '/patients'))) | |
| 1481 self.assertEqual(1, len(DoGet(_REMOTE, '/studies'))) | |
| 1482 self.assertEqual(2, len(DoGet(_REMOTE, '/series'))) | |
| 1483 self.assertEqual(4, len(DoGet(_REMOTE, '/instances'))) | |
| 1484 | |
| 1485 DoDelete(_REMOTE, '/queries/%s' % a) | |
| 1486 self.assertEqual(0, len(DoGet(_REMOTE, '/queries'))) | |
| 1487 | |
| 1488 | |
| 1489 def test_parent(self): | |
| 1490 u = UploadInstance(_REMOTE, 'DummyCT.dcm')['ID'] | |
| 1491 patient = '6816cb19-844d5aee-85245eba-28e841e6-2414fae2' | |
| 1492 study = 'b9c08539-26f93bde-c81ab0d7-bffaf2cb-a4d0bdd0' | |
| 1493 series = 'f2635388-f01d497a-15f7c06b-ad7dba06-c4c599fe' | |
| 1494 instance = '66a662ce-7430e543-bad44d47-0dc5a943-ec7a538d' | |
| 1495 self.assertEqual(instance, u); | |
| 1496 | |
| 1497 a = DoGet(_REMOTE, '/studies/%s/patient' % study) | |
| 1498 self.assertEqual('Patient', a['Type']) | |
| 1499 self.assertEqual(patient, a['ID']) | |
| 1500 | |
| 1501 a = DoGet(_REMOTE, '/series/%s/patient' % series) | |
| 1502 self.assertEqual('Patient', a['Type']) | |
| 1503 self.assertEqual(patient, a['ID']) | |
| 1504 | |
| 1505 a = DoGet(_REMOTE, '/series/%s/study' % series) | |
| 1506 self.assertEqual('Study', a['Type']) | |
| 1507 self.assertEqual(study, a['ID']) | |
| 1508 | |
| 1509 a = DoGet(_REMOTE, '/instances/%s/patient' % instance) | |
| 1510 self.assertEqual('Patient', a['Type']) | |
| 1511 self.assertEqual(patient, a['ID']) | |
| 1512 | |
| 1513 a = DoGet(_REMOTE, '/instances/%s/study' % instance) | |
| 1514 self.assertEqual('Study', a['Type']) | |
| 1515 self.assertEqual(study, a['ID']) | |
| 1516 | |
| 1517 a = DoGet(_REMOTE, '/instances/%s/series' % instance) | |
| 1518 self.assertEqual('Series', a['Type']) | |
| 1519 self.assertEqual(series, a['ID']) | |
| 1520 | |
| 1521 | |
| 1522 def test_shanon(self): | |
| 1523 def Anonymize(instance, replacements = {}): | |
| 1524 return DoPost(_REMOTE, '/instances/%s/anonymize' % instance, { 'Replace' : replacements }, 'application/json') | |
| 1525 | |
| 1526 self.assertEqual(0, len(DoGet(_REMOTE, '/instances'))) | |
| 1527 u = UploadInstance(_REMOTE, 'DummyCT.dcm')['ID'] | |
| 1528 self.assertEqual(1, len(DoGet(_REMOTE, '/instances'))) | |
| 1529 | |
| 1530 tags = [ 'PatientID', 'StudyInstanceUID', 'SeriesInstanceUID', 'SOPInstanceUID', 'DeidentificationMethod' ] | |
| 1531 ids = [ 'ozp00SjY2xG', | |
| 1532 '1.2.840.113619.2.176.2025.1499492.7391.1171285944.390', | |
| 1533 '1.2.840.113619.2.176.2025.1499492.7391.1171285944.394', | |
| 1534 '1.2.840.113619.2.176.2025.1499492.7040.1171286242.109' ] | |
| 1535 | |
| 1536 a = ExtractDicomTags(Anonymize(u), tags) | |
| 1537 for i in range(4): | |
| 1538 self.assertNotEqual(ids[i], a[i]) | |
| 1539 self.assertTrue(a[4].startswith('Orthanc')) | |
| 1540 | |
| 1541 a = ExtractDicomTags(Anonymize(u, { 'PatientName' : 'toto' }), tags) | |
| 1542 for i in range(4): | |
| 1543 self.assertNotEqual(ids[i], a[i]) | |
| 1544 self.assertFalse(a[4].startswith('Orthanc')) | |
| 1545 | |
| 1546 a = ExtractDicomTags(Anonymize(u, { 'SOPInstanceUID' : 'instance' }), tags) | |
| 1547 self.assertEqual('instance', a[3]) | |
| 1548 self.assertFalse(a[4].startswith('Orthanc')) | |
| 1549 | |
| 1550 a = ExtractDicomTags(Anonymize(u, { 'SeriesInstanceUID' : 'series' }), tags) | |
| 1551 self.assertEqual('series', a[2]) | |
| 1552 self.assertFalse(a[4].startswith('Orthanc')) | |
| 1553 | |
| 1554 a = ExtractDicomTags(Anonymize(u, { 'StudyInstanceUID' : 'study' }), tags) | |
| 1555 self.assertEqual('study', a[1]) | |
| 1556 self.assertFalse(a[4].startswith('Orthanc')) | |
| 1557 | |
| 1558 a = ExtractDicomTags(Anonymize(u, { 'PatientID' : 'patient' }), tags) | |
| 1559 self.assertEqual('patient', a[0]) | |
| 1560 self.assertFalse(a[4].startswith('Orthanc')) | |
| 1561 | |
| 1562 a = ExtractDicomTags(Anonymize(u, { 'PatientID' : 'patient', | |
| 1563 'StudyInstanceUID' : 'study', | |
| 1564 'SeriesInstanceUID' : 'series', | |
| 1565 'SOPInstanceUID' : 'instance' }), tags) | |
| 1566 self.assertEqual('patient', a[0]) | |
| 1567 self.assertFalse(a[4].startswith('Orthanc')) | |
| 1568 | |
| 1569 self.assertEqual(1, len(DoGet(_REMOTE, '/instances'))) | |
| 1570 | |
| 1571 | |
| 1572 def test_shanon_2(self): | |
| 1573 def Modify(instance, replacements = {}): | |
| 1574 return DoPost(_REMOTE, '/instances/%s/modify' % instance, { 'Replace' : replacements }, 'application/json') | |
| 1575 | |
| 1576 self.assertEqual(0, len(DoGet(_REMOTE, '/instances'))) | |
| 1577 u = UploadInstance(_REMOTE, 'DummyCT.dcm')['ID'] | |
| 1578 self.assertEqual(1, len(DoGet(_REMOTE, '/instances'))) | |
| 1579 | |
| 1580 tags = [ 'PatientID', 'StudyInstanceUID', 'SeriesInstanceUID', 'SOPInstanceUID', 'DeidentificationMethod' ] | |
| 1581 ids = [ 'ozp00SjY2xG', | |
| 1582 '1.2.840.113619.2.176.2025.1499492.7391.1171285944.390', | |
| 1583 '1.2.840.113619.2.176.2025.1499492.7391.1171285944.394', | |
| 1584 '1.2.840.113619.2.176.2025.1499492.7040.1171286242.109' ] | |
| 1585 | |
| 1586 a = ExtractDicomTags(Modify(u), tags) | |
| 1587 self.assertEqual(ids[0], a[0]) | |
| 1588 self.assertEqual(ids[1], a[1]) | |
| 1589 self.assertEqual(ids[2], a[2]) | |
| 1590 self.assertNotEqual(ids[3], a[3]) | |
| 1591 self.assertEqual(0, len(a[4])) | |
| 1592 | |
| 1593 a = ExtractDicomTags(Modify(u, { 'SOPInstanceUID' : 'instance' }), tags) | |
| 1594 self.assertEqual(ids[0], a[0]) | |
| 1595 self.assertEqual(ids[1], a[1]) | |
| 1596 self.assertEqual(ids[2], a[2]) | |
| 1597 self.assertEqual('instance', a[3]) | |
| 1598 | |
| 1599 a = ExtractDicomTags(Modify(u, { 'SeriesInstanceUID' : 'series' }), tags) | |
| 1600 self.assertEqual(ids[0], a[0]) | |
| 1601 self.assertEqual(ids[1], a[1]) | |
| 1602 self.assertEqual('series', a[2]) | |
| 1603 self.assertNotEqual(ids[3], a[3]) | |
| 1604 | |
| 1605 a = ExtractDicomTags(Modify(u, { 'StudyInstanceUID' : 'study' }), tags) | |
| 1606 self.assertEqual(ids[0], a[0]) | |
| 1607 self.assertEqual('study', a[1]) | |
| 1608 self.assertNotEqual(ids[2], a[2]) | |
| 1609 self.assertNotEqual(ids[3], a[3]) | |
| 1610 | |
| 1611 a = ExtractDicomTags(Modify(u, { 'PatientID' : 'patient' }), tags) | |
| 1612 self.assertEqual('patient', a[0]) | |
| 1613 self.assertNotEqual(ids[1], a[1]) | |
| 1614 self.assertNotEqual(ids[2], a[2]) | |
| 1615 self.assertNotEqual(ids[3], a[3]) | |
| 1616 | |
| 1617 a = ExtractDicomTags(Modify(u, { 'PatientID' : 'patient', | |
| 1618 'StudyInstanceUID' : 'study', | |
| 1619 'SeriesInstanceUID' : 'series', | |
| 1620 'SOPInstanceUID' : 'instance' }), tags) | |
| 1621 self.assertEqual('patient', a[0]) | |
| 1622 self.assertEqual('study', a[1]) | |
| 1623 self.assertEqual('series', a[2]) | |
| 1624 self.assertEqual('instance', a[3]) | |
| 1625 | |
| 1626 self.assertEqual(1, len(DoGet(_REMOTE, '/instances'))) | |
| 1627 | |
| 1628 | |
| 1629 def test_instances_tags(self): | |
| 1630 a = UploadInstance(_REMOTE, 'Knee/T1/IM-0001-0001.dcm')['ID'] | |
| 1631 b = UploadInstance(_REMOTE, 'Knee/T2/IM-0001-0001.dcm')['ID'] | |
| 1632 #a = UploadInstance(_REMOTE, 'Cardiac/MR.X.1.2.276.0.7230010.3.1.4.2831157719.2256.1336386937.676343')['ID'] | |
| 1633 #b = UploadInstance(_REMOTE, 'Cardiac/MR.X.1.2.276.0.7230010.3.1.4.2831157719.2256.1336386925.676329')['ID'] | |
| 1634 | |
| 1635 i = DoGet(_REMOTE, '/patients/%s/instances-tags?simplify' % DoGet(_REMOTE, '/patients')[0]) | |
| 1636 self.assertEqual(2, len(i)) | |
| 1637 self.assertEqual('887', i[i.keys()[0]]['PatientID']) | |
| 1638 self.assertEqual('887', i[i.keys()[1]]['PatientID']) | |
| 1639 | |
| 1640 i = DoGet(_REMOTE, '/patients/%s/instances-tags?simplify' % DoGet(_REMOTE, '/studies')[0]) | |
| 1641 self.assertEqual(2, len(i)) | |
| 1642 self.assertEqual('887', i[i.keys()[0]]['PatientID']) | |
| 1643 self.assertEqual('887', i[i.keys()[1]]['PatientID']) | |
| 1644 | |
| 1645 self.assertEqual(2, len(DoGet(_REMOTE, '/series'))) | |
| 1646 i = DoGet(_REMOTE, '/patients/%s/instances-tags?simplify' % DoGet(_REMOTE, '/series')[0]) | |
| 1647 self.assertEqual(1, len(i)) | |
| 1648 self.assertEqual('887', i[i.keys()[0]]['PatientID']) | |
| 1649 | |
| 1650 i = DoGet(_REMOTE, '/patients/%s/instances-tags?simplify' % DoGet(_REMOTE, '/series')[1]) | |
| 1651 self.assertEqual(1, len(i)) | |
| 1652 self.assertEqual('887', i[i.keys()[0]]['PatientID']) | |
| 1653 | |
| 1654 | |
| 1655 def test_lookup(self): | |
| 1656 a = DoPost(_REMOTE, '/tools/lookup', 'ozp00SjY2xG') | |
| 1657 self.assertEqual(0, len(a)) | |
| 1658 | |
| 1659 UploadInstance(_REMOTE, 'DummyCT.dcm') | |
| 1660 | |
| 1661 a = DoPost(_REMOTE, '/tools/lookup', 'ozp00SjY2xG') | |
| 1662 self.assertEqual(1, len(a)) | |
| 1663 self.assertEqual('Patient', a[0]['Type']) | |
| 1664 self.assertEqual('6816cb19-844d5aee-85245eba-28e841e6-2414fae2', a[0]['ID']) | |
| 1665 self.assertEqual('/patients/%s' % a[0]['ID'], a[0]['Path']) | |
| 1666 | |
| 1667 a = DoPost(_REMOTE, '/tools/lookup', '1.2.840.113619.2.176.2025.1499492.7391.1171285944.390') | |
| 1668 self.assertEqual(1, len(a)) | |
| 1669 self.assertEqual('Study', a[0]['Type']) | |
| 1670 self.assertEqual('b9c08539-26f93bde-c81ab0d7-bffaf2cb-a4d0bdd0', a[0]['ID']) | |
| 1671 self.assertEqual('/studies/%s' % a[0]['ID'], a[0]['Path']) | |
| 1672 | |
| 1673 a = DoPost(_REMOTE, '/tools/lookup', '1.2.840.113619.2.176.2025.1499492.7391.1171285944.394') | |
| 1674 self.assertEqual(1, len(a)) | |
| 1675 self.assertEqual('Series', a[0]['Type']) | |
| 1676 self.assertEqual('f2635388-f01d497a-15f7c06b-ad7dba06-c4c599fe', a[0]['ID']) | |
| 1677 self.assertEqual('/series/%s' % a[0]['ID'], a[0]['Path']) | |
| 1678 | |
| 1679 a = DoPost(_REMOTE, '/tools/lookup', '1.2.840.113619.2.176.2025.1499492.7040.1171286242.109') | |
| 1680 self.assertEqual(1, len(a)) | |
| 1681 self.assertEqual('Instance', a[0]['Type']) | |
| 1682 self.assertEqual('66a662ce-7430e543-bad44d47-0dc5a943-ec7a538d', a[0]['ID']) | |
| 1683 self.assertEqual('/instances/%s' % a[0]['ID'], a[0]['Path']) | |
| 1684 | |
| 1685 DropOrthanc(_REMOTE) | |
| 1686 a = DoPost(_REMOTE, '/tools/lookup', '3113719P') | |
| 1687 self.assertEqual(0, len(a)) | |
| 1688 | |
| 15 | 1689 |
| 1690 def test_autorouting(self): | |
| 1691 knee1 = 'Knee/T1/IM-0001-0001.dcm' | |
| 1692 knee2 = 'Knee/T2/IM-0001-0002.dcm' | |
| 1693 other = 'Brainix/Flair/IM-0001-0001.dcm' | |
| 1694 | |
| 1695 # Check that this version is >= 0.8.0 | |
| 1696 self.assertTrue(IsDefinedInLua(_REMOTE, '_InitializeJob')) | |
| 1697 self.assertTrue('orthanctest' in DoGet(_REMOTE, '/modalities')) | |
| 1698 | |
| 1699 UploadInstance(_REMOTE, knee1) | |
| 1700 self.assertEqual(0, len(DoGet(_LOCAL, '/instances'))) | |
| 1701 | |
| 1702 DropOrthanc(_REMOTE) | |
| 1703 DropOrthanc(_LOCAL) | |
| 1704 InstallLuaScript('Lua/Autorouting.lua') | |
| 1705 UploadInstance(_REMOTE, knee1) | |
| 1706 UploadInstance(_REMOTE, knee2) | |
| 1707 UploadInstance(_REMOTE, other) | |
| 1708 WaitEmpty(_REMOTE) | |
| 1709 UninstallLuaCallbacks() | |
| 1710 self.assertEqual(3, len(DoGet(_LOCAL, '/instances'))) | |
| 1711 | |
| 1712 DropOrthanc(_REMOTE) | |
| 1713 DropOrthanc(_LOCAL) | |
| 1714 InstallLuaScript('Lua/AutoroutingConditional.lua') | |
| 1715 UploadInstance(_REMOTE, knee1) | |
| 1716 UploadInstance(_REMOTE, knee2) | |
| 1717 UploadInstance(_REMOTE, other) | |
| 1718 WaitEmpty(_REMOTE) | |
| 1719 UninstallLuaCallbacks() | |
| 1720 self.assertEqual(2, len(DoGet(_LOCAL, '/instances'))) | |
| 1721 | |
| 1722 DropOrthanc(_REMOTE) | |
| 1723 DropOrthanc(_LOCAL) | |
| 1724 InstallLuaScript('Lua/AutoroutingModification.lua') | |
| 1725 UploadInstance(_REMOTE, knee1) | |
| 1726 WaitEmpty(_REMOTE) | |
| 1727 UninstallLuaCallbacks() | |
| 1728 i = DoGet(_LOCAL, '/instances') | |
| 1729 self.assertEqual(1, len(i)) | |
| 1730 | |
| 1731 with tempfile.NamedTemporaryFile(delete = True) as f: | |
| 1732 f.write(DoGet(_LOCAL, '/instances/%s/file' % i[0])) | |
| 1733 f.flush() | |
| 1734 routed = subprocess.check_output([ 'dcm2xml', f.name ]) | |
| 1735 self.assertEqual('My Medical Device', re.search('"StationName">(.*?)<', routed).group(1).strip()) | |
| 1736 self.assertEqual(None, re.search('"MilitaryRank"', routed)) | |
| 1737 self.assertEqual(None, re.search('"0051,0010"', routed)) # A private tag | |
| 17 | 1738 |
| 1739 | |
| 1740 def test_storescu_rf(self): | |
| 1741 i = UploadInstance(_REMOTE, 'KarstenHilbertRF.dcm')['ID'] | |
| 1742 self.assertEqual(0, len(DoGet(_LOCAL, '/instances'))) | |
| 1743 j = DoPost(_REMOTE, '/modalities/orthanctest/store', str(i), 'text/plain') | |
| 1744 self.assertEqual(1, len(DoGet(_LOCAL, '/instances'))) | |
| 18 | 1745 |
| 1746 | |
| 1747 def test_anonymize_instance(self): | |
| 1748 def AnonymizeAndUpload(instanceId, parameters): | |
| 1749 return DoPost(_REMOTE, '/instances', DoPost(_REMOTE, '/instances/%s/anonymize' % instanceId, parameters, | |
| 1750 'application/json'), 'application/dicom')['ID'] | |
| 1751 | |
| 1752 def ModifyAndUpload(instanceId, parameters): | |
| 1753 return DoPost(_REMOTE, '/instances', DoPost(_REMOTE, '/instances/%s/modify' % instanceId, parameters, | |
| 1754 'application/json'), 'application/dicom')['ID'] | |
| 1755 | |
| 1756 a = UploadInstance(_REMOTE, 'PrivateMDNTags.dcm')['ID'] | |
| 1757 s1 = DoGet(_REMOTE, '/instances/%s/content/PatientName' % a) | |
| 1758 s2 = DoGet(_REMOTE, '/instances/%s/content/00e1-10c2' % a) # Some private tag | |
| 1759 s3 = DoGet(_REMOTE, '/instances/%s/content/StudyDescription' % a) | |
| 1760 s4 = DoGet(_REMOTE, '/instances/%s/content/SeriesDescription' % a) | |
| 1761 s5 = DoGet(_REMOTE, '/instances/%s/content/InstitutionName' % a) | |
| 1762 | |
| 1763 b = AnonymizeAndUpload(a, '{}') | |
| 1764 self.assertNotEqual(s1, DoGet(_REMOTE, '/instances/%s/content/PatientName' % b)) | |
| 1765 self.assertRaises(Exception, lambda: DoGet(_REMOTE, '/instances/%s/content/00e1-10c2' % b)) | |
| 1766 | |
| 1767 # Keep private tag (only OK since Orthanc 0.8.0) | |
| 1768 b = AnonymizeAndUpload(a, '{"Keep":["00e1-10c2"]}') | |
| 1769 self.assertNotEqual(s1, DoGet(_REMOTE, '/instances/%s/content/PatientName' % b)) | |
| 1770 self.assertEqual(s2, DoGet(_REMOTE, '/instances/%s/content/00e1-10c2' % b)) | |
| 1771 | |
| 1772 b = AnonymizeAndUpload(a, '{"Keep":["00e1,10c2","PatientName"]}') | |
| 1773 self.assertEqual(s1, DoGet(_REMOTE, '/instances/%s/content/PatientName' % b)) | |
| 1774 self.assertEqual(s2, DoGet(_REMOTE, '/instances/%s/content/00e1-10c2' % b)) | |
| 1775 | |
| 1776 b = AnonymizeAndUpload(a, '{"Keep":["PatientName"],"Replace":{"00e1,10c2":"Hello"}}') | |
| 1777 self.assertEqual(s1, DoGet(_REMOTE, '/instances/%s/content/PatientName' % b)) | |
| 1778 self.assertTrue(DoGet(_REMOTE, '/instances/%s/content/00e1-10c2' % b).startswith('Hello')) | |
| 1779 | |
| 1780 # Examples from the Wiki | |
| 1781 b = AnonymizeAndUpload(a, '{"Replace":{"PatientName":"hello","0010-0020":"world"},"Keep":["StudyDescription", "SeriesDescription"],"KeepPrivateTags": null}') | |
| 1782 self.assertEqual('hello', DoGet(_REMOTE, '/instances/%s/content/0010-0010' % b).strip()) | |
| 1783 self.assertEqual('world', DoGet(_REMOTE, '/instances/%s/content/PatientID' % b).strip()) | |
| 1784 self.assertEqual(s3, DoGet(_REMOTE, '/instances/%s/content/0008,1030' % b)) | |
| 1785 self.assertEqual(s4, DoGet(_REMOTE, '/instances/%s/content/0008,103e' % b)) | |
| 1786 self.assertEqual(s4, DoGet(_REMOTE, '/instances/%s/content/0008-103E' % b)) | |
| 1787 self.assertEqual(s2, DoGet(_REMOTE, '/instances/%s/content/00e1-10c2' % b)) | |
| 1788 DoGet(_REMOTE, '/instances/%s/content/InstitutionName' % a) | |
| 1789 self.assertRaises(Exception, lambda: DoGet(_REMOTE, '/instances/%s/content/InstitutionName' % b)) | |
| 1790 | |
| 1791 b = ModifyAndUpload(a, '{"Replace":{"PatientName":"hello","PatientID":"world"},"Remove":["InstitutionName"],"RemovePrivateTags": null}') | |
| 1792 self.assertEqual('hello', DoGet(_REMOTE, '/instances/%s/content/0010-0010' % b).strip()) | |
| 1793 self.assertEqual('world', DoGet(_REMOTE, '/instances/%s/content/PatientID' % b).strip()) | |
| 1794 self.assertEqual(s3, DoGet(_REMOTE, '/instances/%s/content/0008,1030' % b)) | |
| 1795 self.assertEqual(s4, DoGet(_REMOTE, '/instances/%s/content/0008,103e' % b)) | |
| 1796 self.assertRaises(Exception, lambda: DoGet(_REMOTE, '/instances/%s/content/00e1-10c2' % b)) | |
| 1797 self.assertRaises(Exception, lambda: DoGet(_REMOTE, '/instances/%s/content/InstitutionName' % b)) | |
| 1798 | |
| 1799 b = ModifyAndUpload(a, '{"Replace":{"PatientName":"hello","PatientID":"world"}}') | |
| 1800 self.assertEqual('hello', DoGet(_REMOTE, '/instances/%s/content/0010-0010' % b).strip()) | |
| 1801 self.assertEqual('world', DoGet(_REMOTE, '/instances/%s/content/PatientID' % b).strip()) | |
| 1802 self.assertEqual(s2, DoGet(_REMOTE, '/instances/%s/content/00e1,10c2' % b)) | |
| 1803 self.assertEqual(s3, DoGet(_REMOTE, '/instances/%s/content/0008,1030' % b)) | |
| 1804 self.assertEqual(s4, DoGet(_REMOTE, '/instances/%s/content/0008-103E' % b)) | |
| 1805 self.assertEqual(s5, DoGet(_REMOTE, '/instances/%s/content/InstitutionName' % b)) | |
| 1806 | |
| 1807 | |
| 1808 # Test modify non-existing | |
| 1809 i = DoPost(_REMOTE, '/tools/create-dicom', | |
| 1810 json.dumps({ | |
| 1811 'PatientName' : 'Jodogne', | |
| 1812 'Modality' : 'CT', | |
| 1813 }))['ID'] | |
| 1814 | |
| 1815 self.assertEqual('Jodogne', DoGet(_REMOTE, '/instances/%s/content/PatientName' % i).strip()) | |
| 1816 self.assertRaises(Exception, lambda: DoGet(_REMOTE, '/instances/%s/content/StudyDescription' % i)) | |
| 1817 self.assertEqual('CT', DoGet(_REMOTE, '/instances/%s/content/Modality' % i).strip()) | |
| 1818 | |
| 1819 b = ModifyAndUpload(i, '{"Replace":{"StudyDescription":"hello","Modality":"world"}}') | |
| 1820 self.assertEqual('Jodogne', DoGet(_REMOTE, '/instances/%s/content/PatientName' % b).strip()) | |
| 1821 self.assertEqual('hello', DoGet(_REMOTE, '/instances/%s/content/StudyDescription' % b).strip()) | |
| 1822 self.assertEqual('world', DoGet(_REMOTE, '/instances/%s/content/Modality' % b).strip()) | |
| 1823 | |
|
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1824 |
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1825 def test_incoming_jpeg(self): |
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1826 def storescu(): |
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1827 with open(os.devnull, 'w') as FNULL: |
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1828 subprocess.check_call([ 'storescu', '-xs', |
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1829 _REMOTE['Server'], str(_REMOTE['DicomPort']), |
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1830 GetDatabasePath('Knix/Loc/IM-0001-0001.dcm') ], |
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1831 stderr = FNULL) |
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1832 |
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1833 self.assertEqual(0, len(DoGet(_REMOTE, '/patients'))) |
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1834 InstallLuaScript('Lua/TransferSyntaxDisable.lua') |
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|
1835 self.assertRaises(Exception, storescu) |
|
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diff
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|
1836 self.assertEqual(0, len(DoGet(_REMOTE, '/patients'))) |
|
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18
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|
1837 InstallLuaScript('Lua/TransferSyntaxEnable.lua') |
|
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diff
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|
1838 storescu() |
|
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diff
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|
1839 self.assertEqual(1, len(DoGet(_REMOTE, '/patients'))) |
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|
1840 |
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|
1841 |
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|
1842 def test_storescu_jpeg(self): |
|
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1843 self.assertEqual(0, len(DoGet(_REMOTE, '/exports')['Exports'])) |
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1844 |
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|
1845 knixStudy = 'b9c08539-26f93bde-c81ab0d7-bffaf2cb-a4d0bdd0' |
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1846 UploadInstance(_REMOTE, 'Knix/Loc/IM-0001-0001.dcm') |
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|
1847 UploadInstance(_REMOTE, 'Knix/Loc/IM-0001-0002.dcm') |
|
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|
1848 UploadInstance(_REMOTE, 'Knix/Loc/IM-0001-0003.dcm') |
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1849 |
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|
1850 a = UploadInstance(_REMOTE, 'Brainix/Flair/IM-0001-0001.dcm')['ID'] |
|
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|
1851 b = UploadInstance(_REMOTE, 'ColorTestImageJ.dcm')['ID'] |
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1852 self.assertEqual(0, len(DoGet(_LOCAL, '/instances'))) |
|
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|
1853 DoPost(_REMOTE, '/modalities/orthanctest/store', [ knixStudy, a, b ]) |
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1854 self.assertEqual(5, len(DoGet(_LOCAL, '/instances'))) |
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|
1855 |
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|
1856 self.assertEqual(3, len(DoGet(_REMOTE, '/exports')['Exports'])) |
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|
1857 |
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|
1858 DropOrthanc(_REMOTE) |
|
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|
1859 self.assertEqual(0, len(DoGet(_REMOTE, '/exports')['Exports'])) |
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1860 |
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|
1861 |
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|
1862 def test_pixel_data(self): |
|
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|
1863 jpeg = UploadInstance(_REMOTE, 'Knix/Loc/IM-0001-0001.dcm')['ID'] |
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1864 color = UploadInstance(_REMOTE, 'ColorTestImageJ.dcm')['ID'] |
|
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|
1865 phenix = UploadInstance(_REMOTE, 'Phenix/IM-0001-0001.dcm')['ID'] |
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|
1866 |
|
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|
1867 phenixSize = 358 * 512 * 2 |
|
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|
1868 colorSize = 1000 * 1000 * 3 |
|
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|
1869 jpegSize = 51918 |
|
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|
1870 |
|
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|
1871 self.assertEqual(1, len(DoGet(_REMOTE, '/instances/%s/content/7fe0-0010' % phenix))) |
|
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|
1872 self.assertEqual(1, len(DoGet(_REMOTE, '/instances/%s/content/7fe0-0010' % color))) |
|
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|
1873 self.assertEqual(2, len(DoGet(_REMOTE, '/instances/%s/content/7fe0-0010' % jpeg))) |
|
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|
1874 |
|
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|
1875 self.assertEqual(0, len(DoGet(_REMOTE, '/instances/%s/content/7fe0-0010/0' % jpeg))) |
|
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1876 self.assertEqual(jpegSize, len(DoGet(_REMOTE, '/instances/%s/content/7fe0-0010/1' % jpeg))) |
|
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|
1877 |
|
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|
1878 self.assertEqual(phenixSize, len(DoGet(_REMOTE, '/instances/%s/content/7fe0-0010/0' % phenix))) |
|
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1879 self.assertEqual(colorSize, len(DoGet(_REMOTE, '/instances/%s/content/7fe0-0010/0' % color))) |
|
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|
1880 |
|
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diff
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|
1881 |
|
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|
1882 def test_decode_brainix(self): |
|
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|
1883 brainix = [ |
|
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|
1884 UploadInstance(_REMOTE, 'Brainix/Epi/IM-0001-0001.dcm')['ID'], # (*) |
|
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|
1885 UploadInstance(_REMOTE, 'Formats/JpegLossless.dcm')['ID'], # JPEG-LS, same as (*) (since Orthanc 0.7.6) |
|
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|
1886 UploadInstance(_REMOTE, 'Formats/Jpeg.dcm')['ID'], # JPEG, same as (*) (since Orthanc 0.7.6) |
|
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|
1887 ] |
|
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|
1888 h = '6fb11b932d535c2be04beabd99793ff8' |
|
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1889 maxValue = 426.0 |
|
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|
1890 |
|
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1891 truth = Image.open(GetDatabasePath('Formats/Brainix.png')) |
|
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|
1892 for i in brainix: |
|
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|
1893 self.AssertSameImages(truth.getdata(), '/instances/%s/image-int16' % i) |
|
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1894 self.AssertSameImages(truth.getdata(), '/instances/%s/image-uint16' % i) |
|
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1895 |
|
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|
1896 truth2 = map(lambda x: min(255, x), truth.getdata()) |
|
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|
1897 for i in brainix: |
|
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1898 self.AssertSameImages(truth2, '/instances/%s/image-uint8' % i) |
|
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|
1899 |
|
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1900 truth2 = map(lambda x: x * 255.0 / maxValue, truth.getdata()) |
|
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|
1901 for i in brainix: |
|
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1902 self.AssertSameImages(truth2, '/instances/%s/preview' % i) |
|
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|
1903 |
|
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|
1904 for i in brainix: |
|
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|
1905 self.assertEqual(h, ComputeMD5(DoGet(_REMOTE, '/instances/%s/matlab' % i))) |
|
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|
1906 |
|
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|
1907 |
|
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|
1908 def test_decode_color(self): |
|
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1909 imagej = UploadInstance(_REMOTE, 'ColorTestImageJ.dcm')['ID'] |
|
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1910 color = UploadInstance(_REMOTE, 'ColorTestMalaterre.dcm')['ID'] |
|
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1911 |
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1912 for i in [ imagej, color ]: |
|
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|
1913 for j in [ 'image-uint8', 'image-uint16', 'image-int16' ]: |
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1914 self.assertRaises(Exception, lambda: DoGet(_REMOTE, '/instances/%s/%s' % (i, j))) |
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1915 |
|
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1916 self.assertEqual('c14c687f7a1ea9fe022479fc87c67274', ComputeMD5(DoGet(_REMOTE, '/instances/%s/preview' % imagej))) |
|
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1917 self.assertEqual('a87d122918a56f803bcfe9d2586b9125', ComputeMD5(DoGet(_REMOTE, '/instances/%s/preview' % color))) |
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1918 |
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1919 self.assertEqual('30cc46bfa7aba77a40e4178f6184c25a', ComputeMD5(DoGet(_REMOTE, '/instances/%s/matlab' % imagej))) |
|
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1920 self.assertEqual('ff195005cef06b59666fd220a9b4cd9a', ComputeMD5(DoGet(_REMOTE, '/instances/%s/matlab' % color))) |
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1921 |
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1922 |
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|
1923 def test_decode_rf(self): |
|
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1924 rf = UploadInstance(_REMOTE, 'KarstenHilbertRF.dcm')['ID'] |
|
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1925 truth = Image.open(GetDatabasePath('Formats/KarstenHilbertRF.png')) |
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1926 |
|
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|
1927 self.AssertSameImages(truth.getdata(), '/instances/%s/image-uint8' % rf) |
|
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1928 self.AssertSameImages(truth.getdata(), '/instances/%s/image-uint16' % rf) |
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1929 self.AssertSameImages(truth.getdata(), '/instances/%s/image-int16' % rf) |
|
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1930 self.AssertSameImages(truth.getdata(), '/instances/%s/preview' % rf) |
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|
1931 |
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1932 self.assertEqual('42254d70efd2f4a1b8f3455909689f0e', ComputeMD5(DoGet(_REMOTE, '/instances/%s/matlab' % rf))) |
|
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|
1933 |
|
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|
1934 |
|
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|
1935 def test_decode_multiframe(self): |
|
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1936 mf = UploadInstance(_REMOTE, 'Multiframe.dcm')['ID'] |
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1937 |
|
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|
1938 # Test the first frame |
|
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1939 truth = Image.open(GetDatabasePath('Formats/Multiframe0.png')) |
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1940 self.AssertSameImages(truth.getdata(), '/instances/%s/image-uint8' % mf) |
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1941 self.AssertSameImages(truth.getdata(), '/instances/%s/image-uint16' % mf) |
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1942 self.AssertSameImages(truth.getdata(), '/instances/%s/image-int16' % mf) |
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1943 self.AssertSameImages(truth.getdata(), '/instances/%s/preview' % mf) |
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1944 self.assertEqual('9812b99d93bbcd4e7684ded089b5dfb3', ComputeMD5(DoGet(_REMOTE, '/instances/%s/matlab' % mf))) |
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1945 |
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1946 self.AssertSameImages(truth.getdata(), '/instances/%s/frames/0/image-uint16' % mf) |
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1947 |
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1948 # Test the last frame |
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1949 truth = Image.open(GetDatabasePath('Formats/Multiframe75.png')) |
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1950 self.AssertSameImages(truth.getdata(), '/instances/%s/frames/75/image-uint16' % mf) |
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1951 |
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1952 |
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1953 def test_decode_signed(self): |
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1954 signed = UploadInstance(_REMOTE, 'SignedCT.dcm')['ID'] |
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1955 minValue = -2000 |
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1956 maxValue = 4042 |
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1957 |
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1958 truth = Image.open(GetDatabasePath('Formats/SignedCT.png')) |
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1959 self.AssertSameImages(truth.getdata(), '/instances/%s/image-int16' % signed) |
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1960 |
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1961 truth2 = map(lambda x: 0 if x >= 32768 else x, truth.getdata()) |
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1962 self.AssertSameImages(truth2, '/instances/%s/image-uint16' % signed) |
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1963 |
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1964 truth3 = map(lambda x: 255 if x >= 256 else x, truth2) |
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1965 self.AssertSameImages(truth3, '/instances/%s/image-uint8' % signed) |
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1966 |
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1967 tmp = map(lambda x: x - 65536 if x >= 32768 else x, truth.getdata()) |
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1968 tmp = map(lambda x: (255.0 * (x - minValue)) / (maxValue - minValue), tmp) |
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1969 self.AssertSameImages(tmp, '/instances/%s/preview' % signed) |
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1970 |
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1971 self.assertEqual('b57e6c872a3da50877c7da689b03a444', ComputeMD5(DoGet(_REMOTE, '/instances/%s/matlab' % signed))) |
| 22 | 1972 |
| 1973 | |
| 1974 def test_issue_32(self): | |
| 1975 f = UploadInstance(_REMOTE, 'Issue32.dcm')['ID'] | |
| 1976 tags = DoGet(_REMOTE, '/instances/%s/tags?simplify' % f) | |
| 1977 self.assertEqual(u'Рентгенография', tags['SeriesDescription']) | |
| 1978 self.assertEqual(u'Таз', tags['BodyPartExamined']) | |
| 1979 self.assertEqual(u'Прямая', tags['ViewPosition']) | |
| 1980 | |
| 1981 | |
| 1982 def test_encodings(self): | |
| 1983 brainix = UploadInstance(_REMOTE, 'Brainix/Epi/IM-0001-0001.dcm')['ID'] | |
| 1984 tags = DoGet(_REMOTE, '/instances/%s/tags?simplify' % brainix) | |
| 1985 self.assertEqual(u'IRM cérébrale, neuro-crâne', tags['StudyDescription']) |