Mercurial > hg > orthanc-tests
annotate Tests/Tests.py @ 130:50cd127e5330
upgrade to year 2018
| author | Sebastien Jodogne <s.jodogne@gmail.com> |
|---|---|
| date | Tue, 02 Jan 2018 09:58:29 +0100 |
| parents | a9fdfcb696e6 |
| children | 149144d854bb |
| rev | line source |
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| 22 | 1 #!/usr/bin/env python |
| 2 # -*- coding: utf-8 -*- | |
| 3 | |
| 4 | |
| 3 | 5 # Orthanc - A Lightweight, RESTful DICOM Store |
| 73 | 6 # Copyright (C) 2012-2016 Sebastien Jodogne, Medical Physics |
| 3 | 7 # Department, University Hospital of Liege, Belgium |
|
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8 # Copyright (C) 2017-2018 Osimis S.A., Belgium |
| 3 | 9 # |
| 10 # This program is free software: you can redistribute it and/or | |
| 11 # modify it under the terms of the GNU General Public License as | |
| 12 # published by the Free Software Foundation, either version 3 of the | |
| 13 # License, or (at your option) any later version. | |
| 14 # | |
| 15 # This program is distributed in the hope that it will be useful, but | |
| 16 # WITHOUT ANY WARRANTY; without even the implied warranty of | |
| 17 # MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU | |
| 18 # General Public License for more details. | |
| 19 # | |
| 20 # You should have received a copy of the GNU General Public License | |
| 21 # along with this program. If not, see <http://www.gnu.org/licenses/>. | |
| 22 | |
| 23 | |
| 14 | 24 import tempfile |
| 3 | 25 import unittest |
| 36 | 26 import base64 |
| 3 | 27 |
| 11 | 28 from PIL import ImageChops |
| 3 | 29 from Toolbox import * |
| 13 | 30 from xml.dom import minidom |
| 3 | 31 |
| 32 _LOCAL = None | |
| 33 _REMOTE = None | |
| 34 | |
| 35 | |
| 36 def SetOrthancParameters(local, remote): | |
| 37 global _LOCAL, _REMOTE | |
| 38 _LOCAL = local | |
| 39 _REMOTE = remote | |
| 40 | |
| 41 | |
| 14 | 42 def ExtractDicomTags(rawDicom, tags): |
| 43 with tempfile.NamedTemporaryFile(delete = True) as f: | |
| 44 f.write(rawDicom) | |
| 45 f.flush() | |
| 45 | 46 data = subprocess.check_output([ FindExecutable('dcm2xml'), f.name ]) |
| 14 | 47 |
| 48 result = [] | |
| 49 for tag in tags: | |
| 50 match = re.search('<element[^>]+name="%s">([^>]*)</element>' % tag, data) | |
| 51 if match == None: | |
| 52 result.append('') | |
| 53 else: | |
| 54 result.append(match.group(1)) | |
| 55 | |
| 56 return result | |
| 57 | |
| 58 | |
| 15 | 59 def InstallLuaScript(path): |
| 60 with open(GetDatabasePath(path), 'r') as f: | |
| 61 DoPost(_REMOTE, '/tools/execute-script', f.read(), 'application/lua') | |
| 62 | |
| 63 | |
| 64 def UninstallLuaCallbacks(): | |
| 65 DoPost(_REMOTE, '/tools/execute-script', 'function OnStoredInstance() end', 'application/lua') | |
| 43 | 66 InstallLuaScript('Lua/TransferSyntaxEnable.lua') |
| 15 | 67 |
| 68 | |
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69 def CompareLists(a, b): |
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70 if len(a) != len(b): |
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71 return False |
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72 |
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73 for i in range(len(a)): |
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74 d = a[i] - b[i] |
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75 if abs(d) >= 0.51: # Add some tolerance for rounding errors |
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76 return False |
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77 |
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78 return True |
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79 |
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80 |
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81 def CompareTags(a, b, tagsToIgnore): |
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82 for i in tagsToIgnore: |
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83 if i in a: |
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84 del a[i] |
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85 if i in b: |
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86 del b[i] |
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87 |
| 123 | 88 if a.keys() == b.keys(): |
| 89 return True | |
| 90 else: | |
| 91 print('Mismatch in tags: %s' % str(set(a.keys()) ^ set(b.keys()))) | |
| 92 return False | |
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93 |
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94 |
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95 def CallFindScu(args): |
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96 p = subprocess.Popen([ FindExecutable('findscu'), |
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97 '-P', '-aec', _REMOTE['DicomAet'], '-aet', _LOCAL['DicomAet'], |
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98 _REMOTE['Server'], str(_REMOTE['DicomPort']) ] + args, |
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99 stderr=subprocess.PIPE) |
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100 return p.communicate()[1] |
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101 |
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102 |
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103 def CallMoveScu(args): |
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104 subprocess.check_call([ FindExecutable('movescu'), |
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105 '--move', _LOCAL['DicomAet'], # Target AET (i.e. storescp) |
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106 '--call', _REMOTE['DicomAet'], # Called AET (i.e. Orthanc) |
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107 '--aetitle', _LOCAL['DicomAet'], # Calling AET (i.e. storescp) |
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108 _REMOTE['Server'], str(_REMOTE['DicomPort']) ] + args, |
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109 stderr=subprocess.PIPE) |
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110 |
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111 |
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112 |
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113 def GenerateTestSequence(): |
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114 return [ |
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115 { |
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116 'StudyDescription': 'Hello^', |
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117 'ReferencedStudySequence' : [ |
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118 { |
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119 'StudyDescription': 'Toto', |
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120 }, |
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121 { |
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122 'StudyDescription': 'Tata', |
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123 }, |
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124 ] |
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125 }, |
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126 { |
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127 'StudyDescription': 'Sébastien^', |
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128 'StudyDate' : '19700202', |
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129 } |
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130 ] |
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131 |
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132 |
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133 |
| 15 | 134 |
| 3 | 135 class Orthanc(unittest.TestCase): |
| 136 def setUp(self): | |
| 83 | 137 if (sys.version_info >= (3, 0)): |
| 138 # Remove annoying warnings about unclosed socket in Python 3 | |
| 139 import warnings | |
| 140 warnings.simplefilter("ignore", ResourceWarning) | |
| 141 | |
| 3 | 142 DropOrthanc(_LOCAL) |
| 143 DropOrthanc(_REMOTE) | |
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144 UninstallLuaCallbacks() |
| 45 | 145 #print "In test", self._testMethodName |
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44
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146 |
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147 def AssertSameImages(self, truth, url): |
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148 im = GetImage(_REMOTE, url) |
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149 self.assertTrue(CompareLists(truth, im.getdata())) |
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150 |
| 3 | 151 |
| 152 def test_system(self): | |
| 153 self.assertTrue('Version' in DoGet(_REMOTE, '/system')) | |
| 154 self.assertEqual('0', DoGet(_REMOTE, '/statistics')['TotalDiskSize']) | |
| 155 self.assertEqual('0', DoGet(_REMOTE, '/statistics')['TotalUncompressedSize']) | |
| 156 | |
| 157 def test_upload(self): | |
| 158 u = UploadInstance(_REMOTE, 'DummyCT.dcm') | |
| 159 self.assertEqual('Success', u['Status']) | |
| 160 u = UploadInstance(_REMOTE, 'DummyCT.dcm') | |
| 161 self.assertEqual('AlreadyStored', u['Status']) | |
| 162 self.assertEqual(1, len(DoGet(_REMOTE, '/patients'))) | |
| 163 self.assertEqual(1, len(DoGet(_REMOTE, '/studies'))) | |
| 164 self.assertEqual(1, len(DoGet(_REMOTE, '/series'))) | |
| 165 self.assertEqual(1, len(DoGet(_REMOTE, '/instances'))) | |
| 166 | |
| 167 i = DoGet(_REMOTE, '/instances/%s/simplified-tags' % u['ID']) | |
| 168 self.assertEqual('20070101', i['StudyDate']) | |
| 169 | |
| 170 | |
| 5 | 171 def test_upload_2(self): |
| 3 | 172 i = UploadInstance(_REMOTE, 'DummyCT.dcm')['ID'] |
| 173 instance = DoGet(_REMOTE, '/instances/%s' % i) | |
| 174 self.assertEqual(i, instance['ID']) | |
| 175 self.assertEqual('1.2.840.113619.2.176.2025.1499492.7040.1171286242.109', | |
| 176 instance['MainDicomTags']['SOPInstanceUID']) | |
| 177 | |
| 178 series = DoGet(_REMOTE, '/series/%s' % instance['ParentSeries']) | |
| 179 self.assertEqual('1.2.840.113619.2.176.2025.1499492.7391.1171285944.394', | |
| 180 series['MainDicomTags']['SeriesInstanceUID']) | |
| 181 | |
| 182 study = DoGet(_REMOTE, '/studies/%s' % series['ParentStudy']) | |
| 183 self.assertEqual('1.2.840.113619.2.176.2025.1499492.7391.1171285944.390', | |
| 184 study['MainDicomTags']['StudyInstanceUID']) | |
| 185 | |
| 186 patient = DoGet(_REMOTE, '/patients/%s' % study['ParentPatient']) | |
| 187 self.assertEqual('ozp00SjY2xG', | |
| 188 patient['MainDicomTags']['PatientID']) | |
| 189 | |
| 190 dicom = DoGet(_REMOTE, '/instances/%s/file' % instance['ID']) | |
| 191 self.assertEqual(2472, len(dicom)) | |
| 192 self.assertEqual('3e29b869978b6db4886355a2b1132124', ComputeMD5(dicom)) | |
| 193 self.assertEqual(1, len(DoGet(_REMOTE, '/instances/%s/frames' % i))) | |
| 194 self.assertEqual('TWINOW', DoGet(_REMOTE, '/instances/%s/simplified-tags' % i)['StationName']) | |
| 195 self.assertEqual('TWINOW', DoGet(_REMOTE, '/instances/%s/tags' % i)['0008,1010']['Value']) | |
| 196 | |
| 197 | |
| 5 | 198 def test_images(self): |
| 199 i = UploadInstance(_REMOTE, 'Phenix/IM-0001-0001.dcm')['ID'] | |
| 200 self.assertEqual(1, len(DoGet(_REMOTE, '/instances/%s/frames' % i))) | |
| 3 | 201 |
| 5 | 202 im = GetImage(_REMOTE, '/instances/%s/preview' % i) |
| 203 self.assertEqual("L", im.mode) | |
| 204 self.assertEqual(512, im.size[0]) | |
| 205 self.assertEqual(358, im.size[1]) | |
| 206 | |
| 207 im = GetImage(_REMOTE, '/instances/%s/image-uint8' % i) | |
| 208 self.assertEqual("L", im.mode) | |
| 209 self.assertEqual(512, im.size[0]) | |
| 210 self.assertEqual(358, im.size[1]) | |
| 211 | |
| 212 im = GetImage(_REMOTE, '/instances/%s/image-uint16' % i) | |
| 213 self.assertEqual(512, im.size[0]) | |
| 214 self.assertEqual(358, im.size[1]) | |
| 215 | |
| 216 im = GetImage(_REMOTE, '/instances/%s/frames/0/preview' % i) | |
| 217 self.assertEqual("L", im.mode) | |
| 218 self.assertEqual(512, im.size[0]) | |
| 219 self.assertEqual(358, im.size[1]) | |
| 220 | |
| 221 im = GetImage(_REMOTE, '/instances/%s/frames/0/image-uint8' % i) | |
| 222 self.assertEqual("L", im.mode) | |
| 223 self.assertEqual(512, im.size[0]) | |
| 224 self.assertEqual(358, im.size[1]) | |
| 225 | |
| 226 im = GetImage(_REMOTE, '/instances/%s/frames/0/image-uint16' % i) | |
| 227 self.assertEqual(512, im.size[0]) | |
| 228 self.assertEqual(358, im.size[1]) | |
| 64 | 229 |
| 230 # This is Little Endian Explicit | |
| 231 self.assertEqual('1.2.840.10008.1.2.1', DoGet(_REMOTE, '/instances/%s/header?simplify' % i)['TransferSyntaxUID']) | |
| 232 | |
| 6 | 233 |
| 234 def test_hierarchy(self): | |
| 235 UploadFolder(_REMOTE, 'Brainix/Epi') | |
| 236 UploadFolder(_REMOTE, 'Brainix/Flair') | |
| 237 UploadFolder(_REMOTE, 'Knee/T1') | |
| 238 UploadFolder(_REMOTE, 'Knee/T2') | |
| 239 | |
| 240 p = DoGet(_REMOTE, '/patients') | |
| 241 s = DoGet(_REMOTE, '/studies') | |
| 242 t = DoGet(_REMOTE, '/series') | |
| 243 self.assertEqual(2, len(p)) | |
| 244 self.assertEqual(2, len(s)) | |
| 245 self.assertEqual(4, len(t)) | |
| 246 self.assertEqual(94, len(DoGet(_REMOTE, '/instances'))) | |
| 247 | |
| 248 brainixPatient = '16738bc3-e47ed42a-43ce044c-a3414a45-cb069bd0' | |
| 249 brainixStudy = '27f7126f-4f66fb14-03f4081b-f9341db2-53925988' | |
| 250 brainixEpi = '2ac1316d-3e432022-62eabff2-c59f5475-9b1ac3f8' | |
| 251 brainixFlair = '1e2c125c-411b8e86-3f4fe68e-a7584dd3-c6da78f0' | |
| 252 | |
| 253 kneePatient = 'ca29faea-b6a0e17f-067743a1-8b778011-a48b2a17' | |
| 254 kneeStudy = '0a9b3153-2512774b-2d9580de-1fc3dcf6-3bd83918' | |
| 255 kneeT1 = '6de73705-c4e65c1b-9d9ea1b5-cabcd8e7-f15e4285' | |
| 256 kneeT2 = 'bbf7a453-0d34251a-03663b55-46bb31b9-ffd74c59' | |
| 257 | |
| 258 self.assertTrue(brainixPatient in p) | |
| 259 self.assertTrue(kneePatient in p) | |
| 260 self.assertTrue(brainixStudy in s) | |
| 261 self.assertTrue(kneeStudy in s) | |
| 262 self.assertTrue(brainixEpi in t) | |
| 263 self.assertTrue(brainixFlair in t) | |
| 264 self.assertTrue(kneeT1 in t) | |
| 265 self.assertTrue(kneeT2 in t) | |
| 266 | |
| 267 self.assertEqual(44, len(DoGet(_REMOTE, '/patients/%s/instances' % brainixPatient))) | |
| 268 self.assertEqual(2, len(DoGet(_REMOTE, '/patients/%s/series' % brainixPatient))) | |
| 269 self.assertEqual(1, len(DoGet(_REMOTE, '/patients/%s/studies' % brainixPatient))) | |
| 270 | |
| 271 self.assertEqual(50, len(DoGet(_REMOTE, '/patients/%s/instances' % kneePatient))) | |
| 272 self.assertEqual(2, len(DoGet(_REMOTE, '/patients/%s/series' % kneePatient))) | |
| 273 self.assertEqual(1, len(DoGet(_REMOTE, '/patients/%s/studies' % kneePatient))) | |
| 274 | |
| 275 self.assertEqual(2, len(DoGet(_REMOTE, '/studies/%s/series' % brainixStudy))) | |
| 276 self.assertEqual(44, len(DoGet(_REMOTE, '/studies/%s/instances' % brainixStudy))) | |
| 277 | |
| 278 self.assertEqual(2, len(DoGet(_REMOTE, '/studies/%s/series' % kneeStudy))) | |
| 279 self.assertEqual(50, len(DoGet(_REMOTE, '/studies/%s/instances' % kneeStudy))) | |
| 280 | |
| 281 self.assertEqual(22, len(DoGet(_REMOTE, '/series/%s/instances' % brainixEpi))) | |
| 282 self.assertEqual(22, len(DoGet(_REMOTE, '/series/%s/instances' % brainixFlair))) | |
| 283 self.assertEqual(24, len(DoGet(_REMOTE, '/series/%s/instances' % kneeT1))) | |
| 284 self.assertEqual(26, len(DoGet(_REMOTE, '/series/%s/instances' % kneeT2))) | |
| 285 | |
| 286 for patient in p: | |
| 287 for study in DoGet(_REMOTE, '/patients/%s/studies' % patient): | |
| 288 self.assertEqual(patient, study['ParentPatient']) | |
| 289 for series in DoGet(_REMOTE, '/studies/%s/series' % study['ID']): | |
| 290 self.assertEqual(study['ID'], series['ParentStudy']) | |
| 291 for instance in DoGet(_REMOTE, '/series/%s/instances' % series['ID']): | |
| 292 self.assertEqual(series['ID'], instance['ParentSeries']) | |
| 293 | |
| 294 self.assertEqual(json.dumps(DoGet(_REMOTE, '/instances/%s/attachments/dicom-as-json/data' % instance['ID'])), | |
| 295 json.dumps(DoGet(_REMOTE, '/instances/%s/tags' % instance['ID']))) | |
| 296 | |
| 297 | |
| 298 r = DoDelete(_REMOTE, "/studies/%s" % brainixStudy)['RemainingAncestor'] | |
| 299 self.assertEqual(1, len(DoGet(_REMOTE, '/patients'))) | |
| 300 self.assertEqual(1, len(DoGet(_REMOTE, '/studies'))) | |
| 301 self.assertEqual(2, len(DoGet(_REMOTE, '/series'))) | |
| 302 self.assertEqual(50, len(DoGet(_REMOTE, '/instances'))) | |
| 303 self.assertEqual(None, r) | |
| 304 | |
| 305 r = DoDelete(_REMOTE, "/series/%s" % kneeT2)['RemainingAncestor'] | |
| 306 self.assertEqual(1, len(DoGet(_REMOTE, '/patients'))) | |
| 307 self.assertEqual(1, len(DoGet(_REMOTE, '/studies'))) | |
| 308 self.assertEqual(1, len(DoGet(_REMOTE, '/series'))) | |
| 309 self.assertEqual(24, len(DoGet(_REMOTE, '/instances'))) | |
| 310 self.assertEqual('Study', r['Type']) | |
| 311 self.assertEqual(kneeStudy, r['ID']) | |
| 312 | |
| 313 r = DoDelete(_REMOTE, "/instances/%s" % DoGet(_REMOTE, '/instances')[0])['RemainingAncestor'] | |
| 314 self.assertEqual(1, len(DoGet(_REMOTE, '/patients'))) | |
| 315 self.assertEqual(1, len(DoGet(_REMOTE, '/studies'))) | |
| 316 self.assertEqual(1, len(DoGet(_REMOTE, '/series'))) | |
| 317 self.assertEqual(23, len(DoGet(_REMOTE, '/instances'))) | |
| 318 self.assertEqual('Series', r['Type']) | |
| 319 self.assertEqual(kneeT1, r['ID']) | |
| 320 | |
| 321 r = DoDelete(_REMOTE, "/patients/%s" % kneePatient)['RemainingAncestor'] | |
| 322 self.assertEqual(0, len(DoGet(_REMOTE, '/patients'))) | |
| 323 self.assertEqual(0, len(DoGet(_REMOTE, '/studies'))) | |
| 324 self.assertEqual(0, len(DoGet(_REMOTE, '/series'))) | |
| 325 self.assertEqual(0, len(DoGet(_REMOTE, '/instances'))) | |
| 326 self.assertEqual(None, r) | |
| 327 | |
| 328 DropOrthanc(_REMOTE) | |
| 329 self.assertEqual('0', DoGet(_REMOTE, '/statistics')['TotalDiskSize']) | |
| 330 self.assertEqual('0', DoGet(_REMOTE, '/statistics')['TotalUncompressedSize']) | |
| 7 | 331 |
| 332 | |
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333 def test_multiframe(self): |
| 7 | 334 i = UploadInstance(_REMOTE, 'Multiframe.dcm')['ID'] |
| 335 self.assertEqual(76, len(DoGet(_REMOTE, '/instances/%s/frames' % i))) | |
| 336 | |
| 337 im = GetImage(_REMOTE, '/instances/%s/frames/0/preview' % i) | |
| 338 self.assertEqual("L", im.mode) | |
| 339 self.assertEqual(512, im.size[0]) | |
| 340 self.assertEqual(512, im.size[1]) | |
| 341 | |
| 342 DoGet(_REMOTE, '/instances/%s/frames/0/image-uint8' % i) | |
| 343 DoGet(_REMOTE, '/instances/%s/frames/0/image-uint16' % i) | |
| 344 DoGet(_REMOTE, '/instances/%s/frames/75/preview' % i) | |
| 345 self.assertRaises(Exception, lambda: DoGet(_REMOTE, '/instances/%s/frames/aaa/preview' % i)) | |
| 346 self.assertRaises(Exception, lambda: DoGet(_REMOTE, '/instances/%s/frames/76/preview' % i)) | |
| 347 | |
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348 |
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349 def test_changes(self): |
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350 # Check emptiness |
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351 c = DoGet(_REMOTE, '/changes') |
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352 self.assertEqual(0, len(c['Changes'])) |
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353 self.assertEqual(0, c['Last']) |
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354 self.assertTrue(c['Done']) |
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355 c = DoGet(_REMOTE, '/changes?last') |
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356 self.assertEqual(0, len(c['Changes'])) |
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357 self.assertEqual(0, c['Last']) |
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358 self.assertTrue(c['Done']) |
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359 |
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360 # Add 1 instance |
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361 i = UploadInstance(_REMOTE, 'Brainix/Flair/IM-0001-0001.dcm')['ID'] |
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362 c = DoGet(_REMOTE, '/changes') |
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363 begin = c['Last'] |
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364 self.assertEqual(4, len(c['Changes'])) |
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365 self.assertTrue(c['Done']) |
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366 self.assertEqual(c['Changes'][-1]['Seq'], c['Last']) |
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367 |
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368 c = DoGet(_REMOTE, '/changes?last') |
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369 self.assertEqual(1, len(c['Changes'])) |
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370 self.assertEqual(begin, c['Last']) |
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371 self.assertTrue(c['Done']) |
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372 c = DoGet(_REMOTE, '/changes?limit=1&since=' + str(begin - 1)) |
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373 self.assertEqual(1, len(c['Changes'])) |
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374 self.assertEqual(begin, c['Last']) |
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375 self.assertTrue(c['Done']) |
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376 c = DoGet(_REMOTE, '/changes?limit=1&since=' + str(begin - 2)) |
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377 self.assertEqual(1, len(c['Changes'])) |
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378 self.assertEqual(begin - 1, c['Last']) |
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379 self.assertFalse(c['Done']) |
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380 c = DoGet(_REMOTE, '/changes?limit=1&since=' + str(begin - 3)) |
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381 self.assertEqual(1, len(c['Changes'])) |
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382 self.assertEqual(begin - 2, c['Last']) |
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383 self.assertFalse(c['Done']) |
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384 |
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385 UploadFolder(_REMOTE, 'Knee/T1') |
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386 UploadFolder(_REMOTE, 'Knee/T2') |
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387 since = begin |
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388 countPatients = 0 |
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389 countStudies = 0 |
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390 countSeries = 0 |
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391 countInstances = 0 |
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392 completed = 0 |
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393 while True: |
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394 c = DoGet(_REMOTE, '/changes', { 'since' : since, 'limit' : 3 }) |
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395 since = c['Last'] |
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396 for i in c['Changes']: |
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397 if i['ResourceType'] == 'Instance': |
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398 countInstances += 1 |
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399 if i['ResourceType'] == 'Patient': |
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400 countPatients += 1 |
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401 if i['ResourceType'] == 'Study': |
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402 countStudies += 1 |
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403 if i['ResourceType'] == 'Series': |
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404 countSeries += 1 |
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405 if i['ChangeType'] == 'NewInstance': |
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406 countInstances += 1 |
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407 if i['ChangeType'] == 'NewPatient': |
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408 countPatients += 1 |
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409 if i['ChangeType'] == 'NewStudy': |
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410 countStudies += 1 |
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411 if i['ChangeType'] == 'NewSeries': |
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412 countSeries += 1 |
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413 if i['ChangeType'] == 'CompletedSeries': |
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414 completed += 1 |
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415 self.assertTrue('ID' in i) |
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416 self.assertTrue('Path' in i) |
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417 self.assertTrue('Seq' in i) |
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418 if c['Done']: |
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419 break |
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420 |
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421 self.assertEqual(2 * 50, countInstances) |
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422 self.assertEqual(2 * 1, countPatients) |
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423 self.assertEqual(2 * 1, countStudies) |
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424 self.assertEqual(2 * 2, countSeries) |
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425 self.assertEqual(0, completed) |
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426 |
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427 |
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428 def test_archive(self): |
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429 UploadInstance(_REMOTE, 'Knee/T1/IM-0001-0001.dcm') |
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430 UploadInstance(_REMOTE, 'Knee/T2/IM-0001-0001.dcm') |
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431 |
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432 z = GetArchive(_REMOTE, '/patients/%s/archive' % DoGet(_REMOTE, '/patients')[0]) |
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433 self.assertEqual(2, len(z.namelist())) |
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434 |
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435 z = GetArchive(_REMOTE, '/studies/%s/archive' % DoGet(_REMOTE, '/studies')[0]) |
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436 self.assertEqual(2, len(z.namelist())) |
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437 |
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438 z = GetArchive(_REMOTE, '/series/%s/archive' % DoGet(_REMOTE, '/series')[0]) |
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439 self.assertEqual(1, len(z.namelist())) |
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440 |
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441 UploadInstance(_REMOTE, 'Brainix/Flair/IM-0001-0001.dcm') |
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442 |
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443 z = GetArchive(_REMOTE, '/patients/%s/archive' % DoGet(_REMOTE, '/patients')[0]) |
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444 self.assertEqual(2, len(z.namelist())) |
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445 |
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446 |
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447 def test_media_archive(self): |
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448 UploadInstance(_REMOTE, 'Knee/T1/IM-0001-0001.dcm') |
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449 UploadInstance(_REMOTE, 'Knee/T2/IM-0001-0001.dcm') |
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450 |
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451 z = GetArchive(_REMOTE, '/patients/%s/media' % DoGet(_REMOTE, '/patients')[0]) |
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452 self.assertEqual(3, len(z.namelist())) |
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453 self.assertTrue('IMAGES/IM0' in z.namelist()) |
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454 self.assertTrue('IMAGES/IM1' in z.namelist()) |
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455 self.assertTrue('DICOMDIR' in z.namelist()) |
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456 |
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457 try: |
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458 os.remove('/tmp/DICOMDIR') |
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459 except: |
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460 # The file does not exist |
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461 pass |
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462 |
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463 z.extract('DICOMDIR', '/tmp') |
| 45 | 464 a = subprocess.check_output([ FindExecutable('dciodvfy'), '/tmp/DICOMDIR' ], |
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465 stderr = subprocess.STDOUT).split('\n') |
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466 self.assertEqual(3, len(a)) |
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467 self.assertTrue(a[0].startswith('Warning')) |
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468 self.assertEqual('BasicDirectory', a[1]) |
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469 self.assertEqual('', a[2]) |
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470 |
| 45 | 471 a = subprocess.check_output([ FindExecutable('dcentvfy'), '/tmp/DICOMDIR' ], |
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472 stderr = subprocess.STDOUT).split('\n') |
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473 self.assertEqual(1, len(a)) |
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474 self.assertEqual('', a[0]) |
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475 |
| 45 | 476 a = subprocess.check_output([ FindExecutable('dcm2xml'), '/tmp/DICOMDIR' ]) |
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477 self.assertTrue(re.search('1.3.46.670589.11.17521.5.0.3124.2008081908590448738', a) != None) |
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478 self.assertTrue(re.search('1.3.46.670589.11.17521.5.0.3124.2008081909113806560', a) != None) |
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479 |
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480 os.remove('/tmp/DICOMDIR') |
| 10 | 481 |
| 482 | |
| 483 def test_protection(self): | |
| 484 UploadInstance(_REMOTE, 'Knee/T1/IM-0001-0001.dcm') | |
| 485 UploadInstance(_REMOTE, 'Brainix/Flair/IM-0001-0001.dcm') | |
| 486 self.assertEqual(2, len(DoGet(_REMOTE, '/patients'))) | |
| 487 a = DoGet(_REMOTE, '/patients')[0] | |
| 488 b = DoGet(_REMOTE, '/patients')[1] | |
| 489 self.assertEqual(0, DoGet(_REMOTE, '/patients/%s/protected' % a)) | |
| 490 DoPut(_REMOTE, '/patients/%s/protected' % a, '0', 'text/plain') | |
| 491 self.assertEqual(0, DoGet(_REMOTE, '/patients/%s/protected' % a)) | |
| 492 DoPut(_REMOTE, '/patients/%s/protected' % a, '1', 'text/plain') | |
| 493 self.assertEqual(1, DoGet(_REMOTE, '/patients/%s/protected' % a)) | |
| 494 DoPut(_REMOTE, '/patients/%s/protected' % a, '0', 'text/plain') | |
| 495 self.assertEqual(0, DoGet(_REMOTE, '/patients/%s/protected' % a)) | |
| 496 | |
| 497 | |
| 12 | 498 def test_raw_tags(self): |
| 10 | 499 i = UploadInstance(_REMOTE, 'PrivateTags.dcm')['ID'] |
| 500 | |
| 501 dicom = DoGet(_REMOTE, '/instances/%s/file' % i) | |
| 502 self.assertEqual('1a7c56cb02d6e742cc9c856a8ac182e3', ComputeMD5(dicom)) | |
| 503 | |
| 504 s = '/instances/%s/content/' % i | |
| 505 | |
| 506 self.assertEqual('LOGIQBOOK', DoGet(_REMOTE, s + '0008-1010').strip()) | |
| 507 self.assertRaises(Exception, lambda: DoGet(_REMOTE, s + '0008-1011')) | |
| 508 | |
| 509 self.assertEqual('Abdomen', DoGet(_REMOTE, s + '7fe1-1001/0/7fe1-1008/0/7fe1-1057').strip()) | |
| 510 self.assertEqual('cla_3c', DoGet(_REMOTE, s + '7fe1-1001/0/7fe1-1008/8/7fe1-1057').strip()) | |
| 511 | |
| 512 UploadInstance(_REMOTE, 'Brainix/Epi/IM-0001-0001.dcm') | |
| 513 UploadInstance(_REMOTE, 'Brainix/Flair/IM-0001-0001.dcm') | |
| 514 UploadInstance(_REMOTE, 'Knee/T1/IM-0001-0001.dcm') | |
| 515 UploadInstance(_REMOTE, 'Knee/T2/IM-0001-0001.dcm') | |
| 516 | |
| 517 for i in DoGet(_REMOTE, '/instances'): | |
| 518 aid = DoGet(_REMOTE, '/instances/%s' % i)['MainDicomTags']['SOPInstanceUID'] | |
| 519 self.assertEqual(aid, DoGet(_REMOTE, '/instances/%s/content/0008-0018' % i).replace(chr(0), '')) | |
| 520 | |
| 521 | |
| 522 def test_raw_tags_mdn(self): | |
| 523 # Bug reported by Cyril Paulus | |
| 524 i = UploadInstance(_REMOTE, 'PrivateMDNTags.dcm')['ID'] | |
| 525 self.assertAlmostEqual(0.000027, DoGet(_REMOTE, '/instances/%s/content/7053-1000' % i)) | |
| 526 | |
| 527 | |
| 528 def test_modify_instance(self): | |
| 529 i = UploadInstance(_REMOTE, 'PrivateTags.dcm')['ID'] | |
| 530 modified = DoPost(_REMOTE, '/instances/%s/modify' % i, | |
| 531 json.dumps({ | |
| 532 "Replace" : { | |
| 533 "PatientName" : "hello", | |
| 534 #"PatientID" : "world" | |
| 535 }, | |
| 536 "Remove" : [ "StationName" ], | |
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537 "RemovePrivateTags" : True |
| 10 | 538 }), |
| 539 'application/json') | |
| 540 j = DoPost(_REMOTE, '/instances', modified, 'application/dicom')['ID'] | |
| 541 | |
| 542 self.assertNotEqual('hello', DoGet(_REMOTE, '/instances/%s/content/0010-0010' % i).strip()) | |
| 543 #self.assertNotEqual('world', DoGet(_REMOTE, '/instances/%s/content/0010-0020' % i).strip()) | |
| 83 | 544 self.assertEqual('LOGIQBOOK', DoGet(_REMOTE, '/instances/%s/content/0008-1010' % i).strip()) |
| 10 | 545 DoGet(_REMOTE, '/instances/%s/content/6003-1010' % i) # Some private tag |
| 546 | |
| 547 self.assertEqual('hello', DoGet(_REMOTE, '/instances/%s/content/0010-0010' % j).strip()) | |
| 548 #self.assertEqual('world', DoGet(_REMOTE, '/instances/%s/content/0010-0020' % j).strip()) | |
| 549 self.assertRaises(Exception, lambda: DoGet(_REMOTE, '/instances/%s/content/0008-1010' % j)) | |
| 550 self.assertRaises(Exception, lambda: DoGet(_REMOTE, '/instances/%s/content/6003-1010' % j)) | |
| 551 | |
| 552 | |
| 553 def test_modify_series(self): | |
| 554 # Upload 4 images from the same series | |
| 555 for i in range(4): | |
| 556 UploadInstance(_REMOTE, 'Brainix/Epi/IM-0001-000%d.dcm' % (i + 1)) | |
| 557 | |
| 558 origSeries = DoGet(_REMOTE, '/series')[0] | |
| 559 newSeries = DoPost(_REMOTE, '/series/%s/modify' % origSeries, | |
| 560 '{"Replace":{"PatientName":"Jodogne"}}', | |
| 561 'application/json')['ID'] | |
| 562 | |
| 563 self.assertEqual(origSeries, DoGet(_REMOTE, '/series/%s' % newSeries)['ModifiedFrom']) | |
| 564 instances = DoGet(_REMOTE, '/series/%s' % newSeries)['Instances'] | |
| 565 self.assertEqual(4, len(instances)) | |
| 566 for i in instances: | |
| 567 j = DoGet(_REMOTE, '/instances/%s' % i)['ModifiedFrom'] | |
| 568 self.assertEqual(newSeries, DoGet(_REMOTE, '/instances/%s' % i)['ParentSeries']) | |
| 569 self.assertEqual(origSeries, DoGet(_REMOTE, '/instances/%s' % j)['ParentSeries']) | |
| 570 | |
| 571 self.assertEqual('Jodogne', DoGet(_REMOTE, '/instances/%s/content/0010-0010' % i).strip()) | |
| 572 self.assertNotEqual('Jodogne', DoGet(_REMOTE, '/instances/%s/content/0010-0010' % j).strip()) | |
| 573 | |
| 574 | |
| 575 def test_modify_study(self): | |
| 576 # Upload 4 images from the 2 series of the same study | |
| 577 for i in range(4): | |
| 578 UploadInstance(_REMOTE, 'Brainix/Flair/IM-0001-000%d.dcm' % (i + 1)) | |
| 579 UploadInstance(_REMOTE, 'Brainix/Epi/IM-0001-000%d.dcm' % (i + 1)) | |
| 580 | |
| 581 origStudy = DoGet(_REMOTE, '/studies')[0] | |
| 582 newStudy = DoPost(_REMOTE, '/studies/%s/modify' % origStudy, | |
| 583 '{"Replace":{"PatientName":"Jodogne"}}', | |
| 584 'application/json')['ID'] | |
| 585 | |
| 586 self.assertEqual(origStudy, DoGet(_REMOTE, '/studies/%s' % newStudy)['ModifiedFrom']) | |
| 587 series = DoGet(_REMOTE, '/studies/%s' % newStudy)['Series'] | |
| 588 self.assertEqual(2, len(series)) | |
| 589 for s in series: | |
| 590 ss = DoGet(_REMOTE, '/series/%s' % s)['ModifiedFrom'] | |
| 591 self.assertEqual(newStudy, DoGet(_REMOTE, '/series/%s' % s)['ParentStudy']) | |
| 592 self.assertEqual(origStudy, DoGet(_REMOTE, '/series/%s' % ss)['ParentStudy']) | |
| 593 | |
| 594 instances = DoGet(_REMOTE, '/series/%s' % s)['Instances'] | |
| 595 for i in instances: | |
| 596 j = DoGet(_REMOTE, '/instances/%s' % i)['ModifiedFrom'] | |
| 597 self.assertEqual(s, DoGet(_REMOTE, '/instances/%s' % i)['ParentSeries']) | |
| 598 self.assertEqual(ss, DoGet(_REMOTE, '/instances/%s' % j)['ParentSeries']) | |
| 599 | |
| 600 self.assertEqual('Jodogne', DoGet(_REMOTE, '/instances/%s/content/0010-0010' % i).strip()) | |
| 601 self.assertNotEqual('Jodogne', DoGet(_REMOTE, '/instances/%s/content/0010-0010' % j).strip()) | |
| 602 | |
| 603 | |
| 604 def test_anonymize_series(self): | |
| 605 # Upload 4 images from the same series | |
| 606 for i in range(4): | |
| 607 UploadInstance(_REMOTE, 'Brainix/Epi/IM-0001-000%d.dcm' % (i + 1)) | |
| 608 | |
| 609 origSeries = DoGet(_REMOTE, '/series')[0] | |
| 610 newSeries = DoPost(_REMOTE, '/series/%s/anonymize' % origSeries, | |
| 611 '{}', | |
| 612 'application/json')['ID'] | |
| 613 | |
| 614 self.assertEqual(origSeries, DoGet(_REMOTE, '/series/%s' % newSeries)['AnonymizedFrom']) | |
| 615 instances = DoGet(_REMOTE, '/series/%s' % newSeries)['Instances'] | |
| 616 self.assertEqual(4, len(instances)) | |
| 617 for i in instances: | |
| 618 j = DoGet(_REMOTE, '/instances/%s' % i)['AnonymizedFrom'] | |
| 619 self.assertEqual(newSeries, DoGet(_REMOTE, '/instances/%s' % i)['ParentSeries']) | |
| 620 self.assertEqual(origSeries, DoGet(_REMOTE, '/instances/%s' % j)['ParentSeries']) | |
| 621 | |
| 622 DoGet(_REMOTE, '/instances/%s/content/0008-1010' % j) | |
| 623 self.assertRaises(Exception, lambda: DoGet(_REMOTE, '/instances/%s/content/0008-1010' % i)) | |
| 624 | |
| 625 | |
| 626 def test_anonymize_study(self): | |
| 627 # Upload 4 images from the 2 series of the same study | |
| 628 for i in range(4): | |
| 629 UploadInstance(_REMOTE, 'Brainix/Flair/IM-0001-000%d.dcm' % (i + 1)) | |
| 630 UploadInstance(_REMOTE, 'Brainix/Epi/IM-0001-000%d.dcm' % (i + 1)) | |
| 631 | |
| 632 origStudy = DoGet(_REMOTE, '/studies')[0] | |
| 633 newStudy = DoPost(_REMOTE,'/studies/%s/anonymize' % origStudy, | |
| 634 '{"Replace":{"PatientName":"Jodogne"}}', | |
| 635 'application/json')['ID'] | |
| 636 | |
| 637 self.assertEqual(origStudy, DoGet(_REMOTE, '/studies/%s' % newStudy)['AnonymizedFrom']) | |
| 638 series = DoGet(_REMOTE, '/studies/%s' % newStudy)['Series'] | |
| 639 self.assertEqual(2, len(series)) | |
| 640 for s in series: | |
| 641 ss = DoGet(_REMOTE, '/series/%s' % s)['AnonymizedFrom'] | |
| 642 self.assertEqual(newStudy, DoGet(_REMOTE, '/series/%s' % s)['ParentStudy']) | |
| 643 self.assertEqual(origStudy, DoGet(_REMOTE, '/series/%s' % ss)['ParentStudy']) | |
| 644 | |
| 645 instances = DoGet(_REMOTE, '/series/%s' % s)['Instances'] | |
| 646 for i in instances: | |
| 647 j = DoGet(_REMOTE, '/instances/%s' % i)['AnonymizedFrom'] | |
| 648 self.assertEqual(s, DoGet(_REMOTE, '/instances/%s' % i)['ParentSeries']) | |
| 649 self.assertEqual(ss, DoGet(_REMOTE, '/instances/%s' % j)['ParentSeries']) | |
| 650 | |
| 651 self.assertEqual('Jodogne', DoGet(_REMOTE, '/instances/%s/content/0010-0010' % i).strip()) | |
| 652 self.assertNotEqual('Jodogne', DoGet(_REMOTE, '/instances/%s/content/0010-0010' % j).strip()) | |
| 11 | 653 |
| 654 | |
| 655 | |
| 656 def test_storescu(self): | |
| 657 # Check emptiness | |
| 658 e = DoGet(_REMOTE, '/exports') | |
| 659 self.assertEqual(0, len(e['Exports'])) | |
| 660 self.assertEqual(0, e['Last']) | |
| 661 self.assertTrue(e['Done']) | |
| 662 e = DoGet(_REMOTE, '/exports?last') | |
| 663 self.assertEqual(0, len(e['Exports'])) | |
| 664 self.assertEqual(0, e['Last']) | |
| 665 self.assertTrue(e['Done']) | |
| 666 | |
| 667 # Add 1 instance | |
| 668 i = UploadInstance(_REMOTE, 'DummyCT.dcm')['ID'] | |
| 669 self.assertEqual(0, len(DoGet(_LOCAL, '/patients'))) | |
| 670 | |
| 671 # Export the instance | |
| 672 j = DoPost(_REMOTE, '/modalities/orthanctest/store', str(i), 'text/plain') # instance | |
| 673 self.assertEqual(1, len(DoGet(_LOCAL, '/patients'))) | |
| 674 self.assertEqual(1, len(DoGet(_LOCAL, '/studies'))) | |
| 675 self.assertEqual(1, len(DoGet(_LOCAL, '/series'))) | |
| 676 self.assertEqual(1, len(DoGet(_LOCAL, '/instances'))) | |
| 677 | |
| 678 e = DoGet(_REMOTE, '/exports') | |
| 679 self.assertEqual(1, len(e['Exports'])) | |
| 680 self.assertTrue(e['Done']) | |
| 681 self.assertEqual(e['Exports'][-1]['Seq'], e['Last']) | |
| 682 e = DoGet(_REMOTE, '/exports?limit=1') | |
| 683 self.assertEqual(1, len(e['Exports'])) | |
| 684 self.assertTrue(e['Done']) | |
| 685 self.assertEqual(e['Exports'][-1]['Seq'], e['Last']) | |
| 686 e = DoGet(_REMOTE, '/exports?last') | |
| 687 self.assertEqual(1, len(e['Exports'])) | |
| 688 self.assertTrue(e['Done']) | |
| 689 self.assertEqual(e['Exports'][-1]['Seq'], e['Last']) | |
| 690 seqInstance = e['Last'] | |
| 691 | |
| 692 # Export the series | |
| 693 j = DoPost(_REMOTE, '/modalities/orthanctest/store', 'f2635388-f01d497a-15f7c06b-ad7dba06-c4c599fe', 'text/plain') | |
| 694 | |
| 695 e = DoGet(_REMOTE, '/exports') | |
| 696 self.assertEqual(2, len(e['Exports'])) | |
| 697 self.assertTrue(e['Done']) | |
| 698 self.assertEqual(e['Exports'][-1]['Seq'], e['Last']) | |
| 699 seqSeries = e['Last'] | |
| 700 self.assertNotEqual(seqInstance, seqSeries) | |
| 701 e = DoGet(_REMOTE, '/exports?limit=1&since=0') | |
| 702 self.assertEqual(1, len(e['Exports'])) | |
| 703 self.assertFalse(e['Done']) | |
| 704 self.assertEqual(e['Exports'][-1]['Seq'], seqInstance) | |
| 705 e = DoGet(_REMOTE, '/exports?limit=1&since=' + str(seqInstance)) | |
| 706 self.assertEqual(1, len(e['Exports'])) | |
| 707 self.assertTrue(e['Done']) | |
| 708 self.assertEqual(e['Exports'][-1]['Seq'], seqSeries) | |
| 709 e = DoGet(_REMOTE, '/exports?last') | |
| 710 self.assertEqual(1, len(e['Exports'])) | |
| 711 self.assertTrue(e['Done']) | |
| 712 self.assertEqual(e['Exports'][-1]['Seq'], seqSeries) | |
| 713 | |
| 714 # Export the study | |
| 715 j = DoPost(_REMOTE, '/modalities/orthanctest/store', 'b9c08539-26f93bde-c81ab0d7-bffaf2cb-a4d0bdd0', 'text/plain') | |
| 716 seqStudy = DoGet(_REMOTE, '/exports')['Last'] | |
| 717 | |
| 718 # Export the patient | |
| 719 j = DoPost(_REMOTE, '/modalities/orthanctest/store', '6816cb19-844d5aee-85245eba-28e841e6-2414fae2', 'text/plain') | |
| 720 self.assertEqual(1, len(DoGet(_LOCAL, '/patients'))) | |
| 721 self.assertEqual(1, len(DoGet(_LOCAL, '/studies'))) | |
| 722 self.assertEqual(1, len(DoGet(_LOCAL, '/series'))) | |
| 723 self.assertEqual(1, len(DoGet(_LOCAL, '/instances'))) | |
| 724 | |
| 725 e = DoGet(_REMOTE, '/exports') | |
| 726 self.assertEqual(4, len(e['Exports'])) | |
| 727 self.assertTrue(e['Done']) | |
| 728 self.assertEqual(e['Exports'][-1]['Seq'], e['Last']) | |
| 729 seqPatient = e['Last'] | |
| 730 self.assertNotEqual(seqInstance, seqSeries) | |
| 731 self.assertNotEqual(seqSeries, seqStudy) | |
| 732 self.assertNotEqual(seqStudy, seqPatient) | |
| 733 self.assertTrue(seqInstance < seqSeries) | |
| 734 self.assertTrue(seqSeries < seqStudy) | |
| 735 self.assertTrue(seqStudy < seqPatient) | |
| 736 e = DoGet(_REMOTE, '/exports?limit=1&since=0') | |
| 737 self.assertEqual(1, len(e['Exports'])) | |
| 738 self.assertFalse(e['Done']) | |
| 739 self.assertEqual(e['Exports'][-1]['Seq'], seqInstance) | |
| 740 e = DoGet(_REMOTE, '/exports?limit=1&since=' + str(seqInstance)) | |
| 741 self.assertEqual(1, len(e['Exports'])) | |
| 742 self.assertFalse(e['Done']) | |
| 743 self.assertEqual(e['Exports'][-1]['Seq'], seqSeries) | |
| 744 e = DoGet(_REMOTE, '/exports?limit=1&since=' + str(seqSeries)) | |
| 745 self.assertEqual(1, len(e['Exports'])) | |
| 746 self.assertFalse(e['Done']) | |
| 747 self.assertEqual(e['Exports'][-1]['Seq'], seqStudy) | |
| 748 e = DoGet(_REMOTE, '/exports?limit=1&since=' + str(seqStudy)) | |
| 749 self.assertEqual(1, len(e['Exports'])) | |
| 750 self.assertTrue(e['Done']) | |
| 751 self.assertEqual(e['Exports'][-1]['Seq'], seqPatient) | |
| 752 e = DoGet(_REMOTE, '/exports?last') | |
| 753 self.assertEqual(1, len(e['Exports'])) | |
| 754 self.assertTrue(e['Done']) | |
| 755 self.assertEqual(e['Exports'][-1]['Seq'], seqPatient) | |
| 756 | |
| 757 | |
| 758 # Check the content of the logged information | |
| 759 e = DoGet(_REMOTE, '/exports')['Exports'] | |
| 760 | |
| 761 if 'PatientID' in e[0]: | |
| 762 # Since Orthanc 0.8.6 | |
| 763 patient = 'PatientID' | |
| 764 study = 'StudyInstanceUID' | |
| 765 series = 'SeriesInstanceUID' | |
| 766 instance = 'SOPInstanceUID' | |
| 767 else: | |
| 768 # Up to Orthanc 0.8.5 | |
| 769 patient = 'PatientId' | |
| 770 study = 'StudyInstanceUid' | |
| 771 series = 'SeriesInstanceUid' | |
| 772 instance = 'SopInstanceUid' | |
| 773 | |
| 774 for k in range(4): | |
| 775 self.assertTrue('Date' in e[k]) | |
| 776 self.assertTrue('Seq' in e[k]) | |
| 777 self.assertEqual('orthanctest', e[k]['RemoteModality']) | |
| 778 | |
| 779 self.assertEqual(10, len(e[0])) | |
| 780 self.assertEqual('Instance', e[0]['ResourceType']) | |
| 781 self.assertEqual('66a662ce-7430e543-bad44d47-0dc5a943-ec7a538d', e[0]['ID']) | |
| 782 self.assertEqual('/instances/66a662ce-7430e543-bad44d47-0dc5a943-ec7a538d', e[0]['Path']) | |
| 783 self.assertEqual('1.2.840.113619.2.176.2025.1499492.7040.1171286242.109', e[0][instance]) | |
| 784 self.assertEqual('1.2.840.113619.2.176.2025.1499492.7391.1171285944.394', e[0][series]) | |
| 785 self.assertEqual('1.2.840.113619.2.176.2025.1499492.7391.1171285944.390', e[0][study]) | |
| 786 self.assertEqual('ozp00SjY2xG', e[0][patient]) | |
| 787 | |
| 788 self.assertEqual(9, len(e[1])) | |
| 789 self.assertEqual('Series', e[1]['ResourceType']) | |
| 790 self.assertEqual('f2635388-f01d497a-15f7c06b-ad7dba06-c4c599fe', e[1]['ID']) | |
| 791 self.assertEqual('/series/f2635388-f01d497a-15f7c06b-ad7dba06-c4c599fe', e[1]['Path']) | |
| 792 self.assertEqual('1.2.840.113619.2.176.2025.1499492.7391.1171285944.394', e[1][series]) | |
| 793 self.assertEqual('1.2.840.113619.2.176.2025.1499492.7391.1171285944.390', e[1][study]) | |
| 794 self.assertEqual('ozp00SjY2xG', e[1][patient]) | |
| 795 | |
| 796 self.assertEqual(8, len(e[2])) | |
| 797 self.assertEqual('Study', e[2]['ResourceType']) | |
| 798 self.assertEqual('b9c08539-26f93bde-c81ab0d7-bffaf2cb-a4d0bdd0', e[2]['ID']) | |
| 799 self.assertEqual('/studies/b9c08539-26f93bde-c81ab0d7-bffaf2cb-a4d0bdd0', e[2]['Path']) | |
| 800 self.assertEqual('1.2.840.113619.2.176.2025.1499492.7391.1171285944.390', e[2][study]) | |
| 801 self.assertEqual('ozp00SjY2xG', e[2][patient]) | |
| 802 | |
| 803 self.assertEqual(7, len(e[3])) | |
| 804 self.assertEqual('Patient', e[3]['ResourceType']) | |
| 805 self.assertEqual('6816cb19-844d5aee-85245eba-28e841e6-2414fae2', e[3]['ID']) | |
| 806 self.assertEqual('/patients/6816cb19-844d5aee-85245eba-28e841e6-2414fae2', e[3]['Path']) | |
| 807 self.assertEqual('ozp00SjY2xG', e[3][patient]) | |
| 808 | |
| 809 DropOrthanc(_REMOTE) | |
| 810 self.assertEqual(0, len(DoGet(_REMOTE, '/exports')['Exports'])) | |
| 811 | |
| 812 | |
| 813 def test_store_peer(self): | |
| 814 self.assertEqual(0, len(DoGet(_LOCAL, '/exports')['Exports'])) | |
| 815 self.assertEqual(0, len(DoGet(_REMOTE, '/exports')['Exports'])) | |
| 816 | |
| 817 i = UploadInstance(_REMOTE, 'DummyCT.dcm')['ID'] | |
| 818 self.assertEqual(0, len(DoGet(_LOCAL, '/patients'))) | |
| 819 self.assertEqual(1, len(DoGet(_REMOTE, '/patients'))) | |
| 820 | |
| 821 j = DoPost(_REMOTE, '/peers/peer/store', str(i), 'text/plain') | |
| 822 self.assertEqual(1, len(DoGet(_LOCAL, '/patients'))) | |
| 823 self.assertEqual(1, len(DoGet(_REMOTE, '/patients'))) | |
| 824 | |
| 825 self.assertEqual(1, len(DoGet(_REMOTE, '/exports')['Exports'])) | |
| 826 | |
| 827 DropOrthanc(_REMOTE) | |
| 828 self.assertEqual(0, len(DoGet(_REMOTE, '/exports')['Exports'])) | |
| 829 | |
| 830 | |
| 831 def test_bulk_storescu(self): | |
| 832 self.assertEqual(0, len(DoGet(_LOCAL, '/patients'))) | |
| 833 | |
| 834 a = UploadInstance(_REMOTE, 'Knee/T1/IM-0001-0001.dcm') | |
| 835 b = UploadInstance(_REMOTE, 'Knee/T2/IM-0001-0001.dcm') | |
| 836 | |
| 837 j = DoPost(_REMOTE, '/modalities/orthanctest/store', [ a['ID'], b['ID'] ], 'application/json') | |
| 838 self.assertEqual(2, len(DoGet(_LOCAL, '/instances'))) | |
| 839 | |
| 840 DropOrthanc(_LOCAL) | |
| 841 | |
| 842 # Send using patient's UUID | |
| 843 self.assertEqual(0, len(DoGet(_LOCAL, '/instances'))) | |
| 844 j = DoPost(_REMOTE, '/modalities/orthanctest/store', | |
| 845 [ 'ca29faea-b6a0e17f-067743a1-8b778011-a48b2a17' ], 'application/json') | |
| 846 self.assertEqual(2, len(DoGet(_LOCAL, '/instances'))) | |
| 847 | |
| 848 | |
| 849 def test_color(self): | |
| 850 i = UploadInstance(_REMOTE, 'ColorTestMalaterre.dcm')['ID'] | |
| 851 im = GetImage(_REMOTE, '/instances/%s/preview' % i) | |
| 852 self.assertEqual("RGB", im.mode) | |
| 853 self.assertEqual(41, im.size[0]) | |
| 854 self.assertEqual(41, im.size[1]) | |
| 855 | |
| 856 # http://effbot.org/zone/pil-comparing-images.htm | |
| 13 | 857 truth = Image.open(GetDatabasePath('ColorTestMalaterre.png')) |
| 11 | 858 self.assertTrue(ImageChops.difference(im, truth).getbbox() is None) |
| 859 | |
| 860 | |
| 12 | 861 def test_faking_ruby_put(self): |
| 862 UploadInstance(_REMOTE, 'Knee/T1/IM-0001-0001.dcm') | |
| 863 UploadInstance(_REMOTE, 'Brainix/Flair/IM-0001-0001.dcm') | |
| 864 self.assertEqual(2, len(DoGet(_REMOTE, '/patients'))) | |
| 865 a = DoGet(_REMOTE, '/patients')[0] | |
| 866 b = DoGet(_REMOTE, '/patients')[1] | |
| 867 self.assertEqual(0, DoGet(_REMOTE, '/patients/%s/protected' % a)) | |
| 868 DoGet(_REMOTE, '/patients/%s/protected' % a, data = { '_method' : 'PUT' }, body = '0') | |
| 869 self.assertEqual(0, DoGet(_REMOTE, '/patients/%s/protected' % a)) | |
| 870 DoGet(_REMOTE, '/patients/%s/protected' % a, data = { '_method' : 'PUT' }, body = '1') | |
| 871 self.assertEqual(1, DoGet(_REMOTE, '/patients/%s/protected' % a)) | |
| 872 DoGet(_REMOTE, '/patients/%s/protected' % a, data = { '_method' : 'PUT' }, body = '0') | |
| 873 self.assertEqual(0, DoGet(_REMOTE, '/patients/%s/protected' % a)) | |
| 874 | |
| 875 | |
| 876 def test_faking_ruby_delete(self): | |
| 877 UploadInstance(_REMOTE, 'Knee/T1/IM-0001-0001.dcm') | |
| 878 UploadInstance(_REMOTE, 'Brainix/Flair/IM-0001-0001.dcm') | |
| 879 self.assertEqual(2, len(DoGet(_REMOTE, '/patients'))) | |
| 880 a = DoGet(_REMOTE, '/patients')[0] | |
| 881 b = DoGet(_REMOTE, '/patients')[1] | |
| 882 DoGet(_REMOTE, '/patients/%s' % a, data = { '_method' : 'DELETE' }) | |
| 883 self.assertEqual(1, len(DoGet(_REMOTE, '/patients'))) | |
| 884 DoGet(_REMOTE, '/patients/%s' % b, data = { '_method' : 'DELETE' }) | |
| 885 self.assertEqual(0, len(DoGet(_REMOTE, '/patients'))) | |
| 886 | |
| 887 | |
| 888 def test_faking_google_put(self): | |
| 889 UploadInstance(_REMOTE, 'Knee/T1/IM-0001-0001.dcm') | |
| 890 UploadInstance(_REMOTE, 'Brainix/Flair/IM-0001-0001.dcm') | |
| 891 self.assertEqual(2, len(DoGet(_REMOTE, '/patients'))) | |
| 892 a = DoGet(_REMOTE, '/patients')[0] | |
| 893 b = DoGet(_REMOTE, '/patients')[1] | |
| 894 self.assertEqual(0, DoGet(_REMOTE, '/patients/%s/protected' % a)) | |
| 895 DoPost(_REMOTE, '/patients/%s/protected' % a, headers = { 'X-HTTP-Method-Override' : 'PUT' }, data = '0') | |
| 896 self.assertEqual(0, DoGet(_REMOTE, '/patients/%s/protected' % a)) | |
| 897 DoPost(_REMOTE, '/patients/%s/protected' % a, headers = { 'X-HTTP-Method-Override' : 'PUT' }, data = '1') | |
| 898 self.assertEqual(1, DoGet(_REMOTE, '/patients/%s/protected' % a)) | |
| 899 DoPost(_REMOTE, '/patients/%s/protected' % a, headers = { 'X-HTTP-Method-Override' : 'PUT' }, data = '0') | |
| 900 self.assertEqual(0, DoGet(_REMOTE, '/patients/%s/protected' % a)) | |
| 901 | |
| 902 | |
| 903 def test_faking_google_delete(self): | |
| 904 UploadInstance(_REMOTE, 'Knee/T1/IM-0001-0001.dcm') | |
| 905 UploadInstance(_REMOTE, 'Brainix/Flair/IM-0001-0001.dcm') | |
| 906 self.assertEqual(2, len(DoGet(_REMOTE, '/patients'))) | |
| 907 a = DoGet(_REMOTE, '/patients')[0] | |
| 908 b = DoGet(_REMOTE, '/patients')[1] | |
| 909 DoPost(_REMOTE, '/patients/%s' % a, headers = { 'X-HTTP-Method-Override' : 'DELETE' }) | |
| 910 self.assertEqual(1, len(DoGet(_REMOTE, '/patients'))) | |
| 911 DoPost(_REMOTE, '/patients/%s' % b, headers = { 'X-HTTP-Method-Override' : 'DELETE' }) | |
| 912 self.assertEqual(0, len(DoGet(_REMOTE, '/patients'))) | |
| 913 | |
| 914 | |
| 915 def test_lua(self): | |
| 916 self.assertEqual(42, DoPost(_REMOTE, '/tools/execute-script', 'print(42)')) | |
| 917 self.assertTrue(IsDefinedInLua(_REMOTE, 'PrintRecursive')) | |
| 918 self.assertFalse(IsDefinedInLua(_REMOTE, 'HelloWorld')) | |
| 919 | |
| 920 | |
| 921 def test_metadata(self): | |
| 922 UploadInstance(_REMOTE, 'Knee/T1/IM-0001-0001.dcm') | |
| 923 p = DoGet(_REMOTE, '/patients')[0] | |
| 924 i = DoGet(_REMOTE, '/instances')[0] | |
| 925 | |
| 926 m = DoGet(_REMOTE, '/patients/%s/metadata' % p) | |
| 927 self.assertEqual(1, len(m)) | |
| 928 self.assertEqual('LastUpdate', m[0]) | |
| 929 | |
| 930 m = DoGet(_REMOTE, '/instances/%s/metadata' % i) | |
|
95
a807a4699eb4
testing of metadata SopClassUid
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
92
diff
changeset
|
931 self.assertEqual(6, len(m)) |
| 12 | 932 self.assertTrue('IndexInSeries' in m) |
| 933 self.assertTrue('ReceptionDate' in m) | |
| 934 self.assertTrue('RemoteAET' in m) | |
|
63
2652d562267a
test Origin metadata of instances
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
62
diff
changeset
|
935 self.assertTrue('Origin' in m) |
|
89
74b7b9aed5f8
test TransferSyntax metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
87
diff
changeset
|
936 self.assertTrue('TransferSyntax' in m) |
|
95
a807a4699eb4
testing of metadata SopClassUid
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
92
diff
changeset
|
937 self.assertTrue('SopClassUid' in m) |
|
63
2652d562267a
test Origin metadata of instances
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
62
diff
changeset
|
938 self.assertEqual(DoGet(_REMOTE, '/instances/%s/metadata/IndexInSeries' % i), 1) |
|
2652d562267a
test Origin metadata of instances
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
changeset
|
939 self.assertEqual(DoGet(_REMOTE, '/instances/%s/metadata/Origin' % i), 'RestApi') |
|
2652d562267a
test Origin metadata of instances
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parents:
62
diff
changeset
|
940 self.assertEqual(DoGet(_REMOTE, '/instances/%s/metadata/RemoteAET' % i), '') # None, received by REST API |
|
89
74b7b9aed5f8
test TransferSyntax metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
87
diff
changeset
|
941 self.assertEqual(DoGet(_REMOTE, '/instances/%s/metadata/TransferSyntax' % i), '1.2.840.10008.1.2.4.91') # JPEG2k |
|
95
a807a4699eb4
testing of metadata SopClassUid
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
92
diff
changeset
|
942 self.assertEqual(DoGet(_REMOTE, '/instances/%s/metadata/SopClassUid' % i), '1.2.840.10008.5.1.4.1.1.4') |
| 12 | 943 |
| 944 # Play with custom metadata | |
| 945 DoPut(_REMOTE, '/patients/%s/metadata/5555' % p, 'coucou') | |
| 946 m = DoGet(_REMOTE, '/patients/%s/metadata' % p) | |
| 947 self.assertEqual(2, len(m)) | |
| 948 self.assertTrue('LastUpdate' in m) | |
| 949 self.assertTrue('5555' in m) | |
| 950 self.assertEqual('coucou', DoGet(_REMOTE, '/patients/%s/metadata/5555' % p)) | |
| 951 DoPut(_REMOTE, '/patients/%s/metadata/5555' % p, 'hello') | |
| 952 self.assertEqual('hello', DoGet(_REMOTE, '/patients/%s/metadata/5555' % p)) | |
| 953 DoDelete(_REMOTE, '/patients/%s/metadata/5555' % p) | |
| 954 m = DoGet(_REMOTE, '/patients/%s/metadata' % p) | |
| 955 self.assertEqual(1, len(m)) | |
| 956 self.assertTrue('LastUpdate' in m) | |
| 13 | 957 |
| 958 | |
| 959 def test_statistics(self): | |
| 960 # Upload 16 instances | |
| 961 for i in range(4): | |
| 962 UploadInstance(_REMOTE, 'Brainix/Flair/IM-0001-000%d.dcm' % (i + 1)) | |
| 963 UploadInstance(_REMOTE, 'Brainix/Epi/IM-0001-000%d.dcm' % (i + 1)) | |
| 964 UploadInstance(_REMOTE, 'Knee/T1/IM-0001-000%d.dcm' % (i + 1)) | |
| 965 UploadInstance(_REMOTE, 'Knee/T2/IM-0001-000%d.dcm' % (i + 1)) | |
| 966 | |
| 967 s = DoGet(_REMOTE, '/statistics') | |
| 968 self.assertEqual(16, s['CountInstances']) | |
| 969 self.assertEqual(2, s['CountPatients']) | |
| 970 self.assertEqual(2, s['CountStudies']) | |
| 971 self.assertEqual(4, s['CountSeries']) | |
| 972 d = int(s['TotalUncompressedSize']) | |
| 973 | |
| 974 e = 0 | |
| 975 for patient in DoGet(_REMOTE, '/patients'): | |
| 976 s = DoGet(_REMOTE, '/patients/%s/statistics' % patient) | |
| 977 self.assertEqual(8, s['CountInstances']) | |
| 978 self.assertEqual(1, s['CountStudies']) | |
| 979 self.assertEqual(2, s['CountSeries']) | |
| 980 e += int(s['UncompressedSize']) | |
| 981 | |
| 982 for study in DoGet(_REMOTE, '/studies'): | |
| 983 s = DoGet(_REMOTE, '/studies/%s/statistics' % study) | |
| 984 self.assertEqual(8, s['CountInstances']) | |
| 985 self.assertEqual(2, s['CountSeries']) | |
| 986 e += int(s['UncompressedSize']) | |
| 987 | |
| 988 for series in DoGet(_REMOTE, '/series'): | |
| 989 s = DoGet(_REMOTE, '/series/%s/statistics' % series) | |
| 990 self.assertEqual(4, s['CountInstances']) | |
| 991 e += int(s['UncompressedSize']) | |
| 992 | |
| 993 self.assertEqual(3 * d, e) | |
| 994 | |
| 995 | |
| 996 def test_custom_attachment(self): | |
| 997 UploadInstance(_REMOTE, 'Brainix/Flair/IM-0001-0001.dcm') | |
| 998 patient = DoGet(_REMOTE, '/patients')[0] | |
| 999 instance = DoGet(_REMOTE, '/instances')[0] | |
| 1000 size = int(DoGet(_REMOTE, '/patients/%s/statistics' % patient)['DiskSize']) | |
| 1001 self.assertEqual(size, int(DoGet(_REMOTE, '/statistics')['TotalDiskSize'])) | |
| 1002 | |
| 1003 self.assertEqual(0, len(DoGet(_REMOTE, '/patients/%s/attachments' % patient))) | |
| 1004 self.assertEqual(2, len(DoGet(_REMOTE, '/instances/%s/attachments' % instance))) | |
| 1005 self.assertTrue('dicom' in DoGet(_REMOTE, '/instances/%s/attachments' % instance)) | |
| 1006 self.assertTrue('dicom-as-json' in DoGet(_REMOTE, '/instances/%s/attachments' % instance)) | |
| 1007 | |
| 1008 self.assertRaises(Exception, lambda: DoPut(_REMOTE, '/patients/%s/attachments/22' % patient, 'hello')) | |
| 1009 hello = 'hellohellohellohellohellohellohellohellohello' | |
| 1010 DoPut(_REMOTE, '/patients/%s/attachments/1025' % patient, hello) | |
| 1011 self.assertEqual(int(DoGet(_REMOTE, '/patients/%s/statistics' % patient)['DiskSize']), | |
| 1012 int(DoGet(_REMOTE, '/statistics')['TotalDiskSize'])) | |
| 1013 self.assertEqual(int(DoGet(_REMOTE, '/patients/%s/statistics' % patient)['DiskSize']), | |
| 1014 size + int(DoGet(_REMOTE, '/patients/%s/attachments/1025/compressed-size' % patient))) | |
| 1015 | |
| 1016 DoPut(_REMOTE, '/patients/%s/attachments/1026' % patient, 'world') | |
| 1017 self.assertEqual(int(DoGet(_REMOTE, '/patients/%s/statistics' % patient)['DiskSize']), | |
| 1018 int(DoGet(_REMOTE, '/statistics')['TotalDiskSize'])) | |
| 1019 self.assertEqual(int(DoGet(_REMOTE, '/patients/%s/statistics' % patient)['DiskSize']), | |
| 1020 size + | |
| 1021 int(DoGet(_REMOTE, '/patients/%s/attachments/1025/compressed-size' % patient)) + | |
| 1022 int(DoGet(_REMOTE, '/patients/%s/attachments/1026/compressed-size' % patient))) | |
| 1023 | |
| 1024 self.assertEqual(2, len(DoGet(_REMOTE, '/patients/%s/attachments' % patient))) | |
| 1025 self.assertEqual(hello, DoGet(_REMOTE, '/patients/%s/attachments/1025/data' % patient)) | |
| 1026 self.assertEqual('world', DoGet(_REMOTE, '/patients/%s/attachments/1026/data' % patient)) | |
| 1027 DoPost(_REMOTE, '/patients/%s/attachments/1025/verify-md5' % patient) | |
| 1028 DoPost(_REMOTE, '/patients/%s/attachments/1026/verify-md5' % patient) | |
| 1029 DoPut(_REMOTE, '/patients/%s/attachments/1026' % patient, 'world2') | |
| 1030 self.assertEqual('world2', DoGet(_REMOTE, '/patients/%s/attachments/1026/data' % patient)) | |
| 1031 | |
| 1032 self.assertRaises(Exception, lambda: DoDelete(_REMOTE, '/instances/%s/attachments/dicom' % instance)) | |
| 1033 DoDelete(_REMOTE, '/patients/%s/attachments/1025' % patient) | |
| 1034 self.assertEqual(int(DoGet(_REMOTE, '/patients/%s/statistics' % patient)['DiskSize']), | |
| 1035 int(DoGet(_REMOTE, '/statistics')['TotalDiskSize'])) | |
| 1036 self.assertEqual(int(DoGet(_REMOTE, '/patients/%s/statistics' % patient)['DiskSize']), | |
| 1037 size + int(DoGet(_REMOTE, '/patients/%s/attachments/1026/compressed-size' % patient))) | |
| 1038 | |
| 1039 self.assertEqual(1, len(DoGet(_REMOTE, '/patients/%s/attachments' % patient))) | |
| 1040 DoDelete(_REMOTE, '/patients/%s/attachments/1026' % patient) | |
| 1041 self.assertEqual(0, len(DoGet(_REMOTE, '/patients/%s/attachments' % patient))) | |
| 1042 | |
| 1043 self.assertEqual(int(DoGet(_REMOTE, '/patients/%s/statistics' % patient)['DiskSize']), size) | |
| 1044 self.assertEqual(size, int(DoGet(_REMOTE, '/statistics')['TotalDiskSize'])) | |
| 1045 | |
| 1046 | |
| 1047 def test_incoming_storescu(self): | |
| 1048 self.assertEqual(0, len(DoGet(_REMOTE, '/patients'))) | |
| 45 | 1049 subprocess.check_call([ FindExecutable('storescu'), |
|
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1050 _REMOTE['Server'], str(_REMOTE['DicomPort']), |
| 13 | 1051 GetDatabasePath('ColorTestImageJ.dcm') ]) |
| 1052 self.assertEqual(1, len(DoGet(_REMOTE, '/patients'))) | |
| 1053 | |
|
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1054 i = DoGet(_REMOTE, '/instances') |
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1055 self.assertEqual(1, len(i)) |
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1056 m = DoGet(_REMOTE, '/instances/%s/metadata' % i[0]) |
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1057 self.assertEqual(6, len(m)) |
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1058 self.assertTrue('IndexInSeries' in m) |
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1059 self.assertTrue('ReceptionDate' in m) |
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1060 self.assertTrue('RemoteAET' in m) |
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1061 self.assertTrue('Origin' in m) |
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1062 self.assertTrue('TransferSyntax' in m) |
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1063 self.assertTrue('SopClassUid' in m) |
|
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1064 self.assertEqual(DoGet(_REMOTE, '/instances/%s/metadata/IndexInSeries' % i[0]), 1) |
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1065 self.assertEqual(DoGet(_REMOTE, '/instances/%s/metadata/Origin' % i[0]), 'DicomProtocol') |
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1066 self.assertEqual(DoGet(_REMOTE, '/instances/%s/metadata/RemoteAET' % i[0]), 'STORESCU') |
|
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1067 self.assertEqual(DoGet(_REMOTE, '/instances/%s/metadata/TransferSyntax' % i[0]), '1.2.840.10008.1.2.1') |
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1068 self.assertEqual(DoGet(_REMOTE, '/instances/%s/metadata/SopClassUid' % i[0]), '1.2.840.10008.5.1.4.1.1.7') |
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1069 |
| 13 | 1070 |
| 1071 def test_incoming_findscu(self): | |
| 1072 UploadInstance(_REMOTE, 'Multiframe.dcm') | |
| 1073 UploadInstance(_REMOTE, 'ColorTestImageJ.dcm') | |
| 1074 | |
| 1075 i = CallFindScu([ '-k', '0008,0052=PATIENT', '-k', '0010,0010' ]) | |
| 1076 patientNames = re.findall('\(0010,0010\).*?\[(.*?)\]', i) | |
| 1077 self.assertEqual(2, len(patientNames)) | |
| 1078 self.assertTrue('Test Patient BG ' in patientNames) | |
| 1079 self.assertTrue('Anonymized' in patientNames) | |
| 1080 | |
| 1081 i = CallFindScu([ '-k', '0008,0052=SERIES', '-k', '0008,0021' ]) | |
| 1082 series = re.findall('\(0008,0021\).*?\[\s*(.*?)\s*\]', i) | |
| 1083 self.assertEqual(2, len(series)) | |
| 1084 self.assertTrue('20070208' in series) | |
| 1085 self.assertTrue('19980312' in series) | |
| 1086 | |
|
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1087 i = CallFindScu([ '-k', '0008,0052=SERIES', '-k', '0008,0021', '-k', 'ModalitiesInStudy=MR\\XA' ]) |
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1088 series = re.findall('\(0008,0021\).*?\[\s*(.*?)\s*\]', i) |
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1089 self.assertEqual(1, len(series)) |
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1090 self.assertTrue('19980312' in series) |
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1091 |
| 13 | 1092 i = CallFindScu([ '-k', '0008,0052=SERIES', '-k', 'PatientName=Anonymized' ]) |
| 1093 series = re.findall('\(0010,0010\).*?\[\s*(.*?)\s*\]', i) | |
| 1094 self.assertEqual(1, len(series)) | |
| 1095 | |
| 1096 # Test the "CaseSentitivePN" flag (false by default) | |
| 1097 i = CallFindScu([ '-k', '0008,0052=SERIES', '-k', 'PatientName=anonymized' ]) | |
| 1098 series = re.findall('\(0010,0010\).*?\[\s*(.*?)\s*\]', i) | |
| 1099 self.assertEqual(1, len(series)) | |
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1100 |
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1101 # Test returning sequence values (only since Orthanc 0.9.5) |
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1102 i = CallFindScu([ '-k', '0008,0052=SERIES', '-k', '0008,2112' ]) # "ColorTestImageJ" has this sequence tag |
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1103 sequences = re.findall('\(0008,2112\)', i) |
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1104 self.assertEqual(1, len(sequences)) |
| 70 | 1105 |
| 1106 # Test range search (buggy if Orthanc <= 0.9.6) | |
| 1107 i = CallFindScu([ '-k', '0008,0052=STUDY', '-k', 'StudyDate=19980312-' ]) | |
| 1108 studies = re.findall('\(0008,0020\).*?\[\s*(.*?)\s*\]', i) | |
| 1109 self.assertEqual(2, len(studies)) | |
| 1110 self.assertTrue('20070208' in studies) | |
| 1111 self.assertTrue('19980312' in studies) | |
| 1112 i = CallFindScu([ '-k', '0008,0052=STUDY', '-k', 'StudyDate=19980312-19980312' ]) | |
| 1113 studies = re.findall('\(0008,0020\).*?\[\s*(.*?)\s*\]', i) | |
| 1114 self.assertEqual(1, len(studies)) | |
| 1115 self.assertTrue('19980312' in studies) | |
| 1116 i = CallFindScu([ '-k', '0008,0052=STUDY', '-k', 'StudyDate=-19980312' ]) | |
| 1117 studies = re.findall('\(0008,0020\).*?\[\s*(.*?)\s*\]', i) | |
| 1118 self.assertEqual(1, len(studies)) | |
| 1119 self.assertTrue('19980312' in studies) | |
| 13 | 1120 |
| 1121 | |
| 1122 def test_incoming_movescu(self): | |
| 1123 UploadInstance(_REMOTE, 'Multiframe.dcm') | |
| 1124 | |
| 1125 self.assertEqual(0, len(DoGet(_LOCAL, '/patients'))) | |
| 17 | 1126 CallMoveScu([ '--patient', '-k', '0008,0052=PATIENT', '-k', 'PatientID=none' ]) |
| 13 | 1127 self.assertEqual(0, len(DoGet(_LOCAL, '/patients'))) |
| 1128 CallMoveScu([ '--patient', '-k', '0008,0052=PATIENT', '-k', 'PatientID=12345678' ]) | |
| 1129 self.assertEqual(1, len(DoGet(_LOCAL, '/patients'))) | |
| 1130 | |
| 1131 | |
| 1132 def test_findscu(self): | |
| 1133 i = UploadInstance(_REMOTE, 'DummyCT.dcm')['ID'] | |
| 1134 j = UploadInstance(_REMOTE, 'Issue22.dcm')['ID'] | |
| 1135 k = UploadInstance(_REMOTE, 'ColorTestImageJ.dcm')['ID'] | |
| 1136 DoPost(_REMOTE, '/modalities/orthanctest/store', str(i), 'text/plain') | |
| 1137 | |
| 1138 # Test the "find-patient" level | |
| 1139 p = DoPost(_REMOTE, '/modalities/orthanctest/find-patient', { }) | |
| 1140 self.assertEqual(1, len(p)) | |
| 1141 self.assertEqual('ozp00SjY2xG', p[0]['PatientID']) | |
| 1142 | |
| 1143 # Test wildcards constraints. The "LO" value representation | |
| 1144 # for PatientID is always case-sensitive, but the "PN" for | |
| 1145 # PatientName might depend on the implementation: | |
| 1146 # "GenerateConfigurationForTests.py" will force it to be case | |
| 1147 # insensitive (which was the default until Orthanc 0.8.6). | |
| 1148 p = DoPost(_REMOTE, '/modalities/orthanctest/find-patient', { 'PatientName' : 'K*' }) | |
| 1149 self.assertEqual(1, len(p)) | |
| 1150 | |
| 1151 p = DoPost(_REMOTE, '/modalities/orthanctest/find-patient', { 'PatientName' : 'k*' }) | |
| 1152 self.assertEqual(1, len(p)) | |
| 1153 | |
| 1154 p = DoPost(_REMOTE, '/modalities/orthanctest/find-patient', { 'PatientID' : 'ozp*' }) | |
| 1155 self.assertEqual(1, len(p)) | |
| 1156 | |
| 1157 p = DoPost(_REMOTE, '/modalities/orthanctest/find-patient', { 'PatientID' : 'o?p*' }) | |
| 1158 self.assertEqual(1, len(p)) | |
| 1159 | |
| 1160 p = DoPost(_REMOTE, '/modalities/orthanctest/find-patient', { 'PatientID' : '0?q*' }) | |
| 1161 self.assertEqual(0, len(p)) | |
| 1162 | |
| 1163 p = DoPost(_REMOTE, '/modalities/orthanctest/find-patient', { 'PatientName' : 'B*' }) | |
| 1164 self.assertEqual(0, len(p)) | |
| 1165 | |
| 1166 p = DoPost(_REMOTE, '/modalities/orthanctest/find-patient', { 'PatientName' : 'b*' }) | |
| 1167 self.assertEqual(0, len(p)) | |
| 1168 | |
| 1169 DoPost(_REMOTE, '/modalities/orthanctest/store', str(j), 'text/plain') | |
| 1170 DoPost(_REMOTE, '/modalities/orthanctest/store', str(k), 'text/plain') | |
| 1171 DoPost(_REMOTE, '/modalities/orthanctest/find-patient', { }) | |
| 1172 self.assertEqual(3, len(DoPost(_REMOTE, '/modalities/orthanctest/find-patient', { }))) | |
| 1173 | |
| 1174 p = DoPost(_REMOTE, '/modalities/orthanctest/find-patient', { 'PatientName' : 'A*' }) | |
| 1175 self.assertEqual(2, len(p)) | |
| 1176 | |
| 1177 # Test the "find-study" level. This is the instance "ColorTestImageJ.dcm" | |
| 1178 s = DoPost(_REMOTE, '/modalities/orthanctest/find-study', { 'PatientID' : 'B9uTHKOZ' }) | |
| 1179 self.assertEqual(1, len(s)) | |
| 1180 self.assertEqual('20070208', s[0]['StudyDate']) | |
| 1181 | |
| 1182 # Test range searches | |
| 1183 t = DoPost(_REMOTE, '/modalities/orthanctest/find-study', { 'PatientID' : 'B9uTHKOZ', | |
| 1184 'StudyDate' : '-20070101' }) | |
| 1185 self.assertEqual(0, len(t)) | |
| 1186 | |
| 1187 t = DoPost(_REMOTE, '/modalities/orthanctest/find-study', { 'PatientID' : 'B9uTHKOZ', | |
| 1188 'StudyDate' : '20090101-' }) | |
| 1189 self.assertEqual(0, len(t)) | |
| 1190 | |
| 1191 t = DoPost(_REMOTE, '/modalities/orthanctest/find-study', { 'PatientID' : 'B9uTHKOZ', | |
| 1192 'StudyDate' : '20070101-' }) | |
| 1193 self.assertEqual(1, len(t)) | |
| 1194 | |
| 1195 t = DoPost(_REMOTE, '/modalities/orthanctest/find-study', { 'PatientID' : 'B9uTHKOZ', | |
| 1196 'StudyDate' : '-20090101' }) | |
| 1197 self.assertEqual(1, len(t)) | |
| 1198 | |
| 1199 t = DoPost(_REMOTE, '/modalities/orthanctest/find-study', { 'PatientID' : 'B9uTHKOZ', | |
| 1200 'StudyDate' : '20070207-20070207' }) | |
| 1201 self.assertEqual(0, len(t)) | |
| 1202 | |
| 1203 t = DoPost(_REMOTE, '/modalities/orthanctest/find-study', { 'PatientID' : 'B9uTHKOZ', | |
| 1204 'StudyDate' : '20070208-20070208' }) | |
| 1205 self.assertEqual(1, len(t)) | |
| 1206 | |
| 1207 t = DoPost(_REMOTE, '/modalities/orthanctest/find-study', { 'PatientID' : 'B9uTHKOZ', | |
| 1208 'StudyDate' : '20070209-20070209' }) | |
| 1209 self.assertEqual(0, len(t)) | |
| 1210 | |
| 1211 # Test the ModalitiesInStudy tag | |
| 1212 t = DoPost(_REMOTE, '/modalities/orthanctest/find-study', { | |
| 1213 'PatientID' : 'B9uTHKOZ', | |
| 1214 'ModalitiesInStudy' : 'US' }) | |
| 1215 self.assertEqual(0, len(t)) | |
| 1216 | |
| 1217 t = DoPost(_REMOTE, '/modalities/orthanctest/find-study', { | |
| 1218 'PatientID' : 'B9uTHKOZ', | |
| 1219 'ModalitiesInStudy' : 'CT' }) | |
| 1220 self.assertEqual(1, len(t)) | |
| 1221 | |
| 1222 t = DoPost(_REMOTE, '/modalities/orthanctest/find-study', { | |
| 1223 'PatientID' : 'B9uTHKOZ', | |
| 1224 'ModalitiesInStudy' : 'US\\CT' }) | |
| 1225 self.assertEqual(1, len(t)) | |
| 1226 | |
| 1227 # Test the "find-series" level | |
| 1228 t = DoPost(_REMOTE, '/modalities/orthanctest/find-series', { | |
| 1229 'PatientID' : 'B9uTHKOZ', | |
| 1230 'StudyInstanceUID' : s[0]['StudyInstanceUID'] }) | |
| 1231 self.assertEqual(1, len(t)) | |
| 1232 | |
| 1233 # Test "\" separator | |
| 1234 t = DoPost(_REMOTE, '/modalities/orthanctest/find-series', { | |
| 1235 'PatientID' : 'B9uTHKOZ', | |
| 1236 'StudyInstanceUID' : s[0]['StudyInstanceUID'], | |
| 1237 'Modality' : 'MR\\CT\\US' }) | |
| 1238 self.assertEqual(1, len(t)) | |
| 1239 | |
| 1240 t = DoPost(_REMOTE, '/modalities/orthanctest/find-series', { | |
| 1241 'PatientID' : 'B9uTHKOZ', | |
| 1242 'StudyInstanceUID' : s[0]['StudyInstanceUID'], | |
| 1243 'Modality' : 'MR\\US' }) | |
| 1244 self.assertEqual(0, len(t)) | |
| 1245 | |
| 1246 | |
| 1247 def test_update_modalities(self): | |
| 1248 try: | |
| 1249 DoDelete(_REMOTE, '/modalities/toto') | |
| 1250 except: | |
| 1251 pass | |
| 1252 try: | |
| 1253 DoDelete(_REMOTE, '/modalities/tata') | |
| 1254 except: | |
| 1255 pass | |
| 1256 self.assertRaises(Exception, lambda: DoGet(_REMOTE, '/modalities/toto')) | |
| 1257 DoPut(_REMOTE, '/modalities/toto', [ "STORESCP", "localhost", 2000 ]) | |
| 116 | 1258 DoPut(_REMOTE, '/modalities/tata', [ "STORESCP", "localhost", 2000, 'MedInria' ]) # check backward compatiblity with obsolete manufacturer |
| 1259 DoDelete(_REMOTE, '/modalities/tata') | |
| 124 | 1260 DoPut(_REMOTE, '/modalities/tata', [ "STORESCP", "localhost", 2000, 'GenericNoUniversalWildcard' ]) |
|
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1261 DoDelete(_REMOTE, '/modalities/tata') |
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|
1262 DoPut(_REMOTE, '/modalities/tata', [ "STORESCP", "localhost", 2000, 'GenericNoWildcardInDates' ]) |
| 128 | 1263 modalitiesReadback = DoGet(_REMOTE, '/modalities?expand') |
| 1264 self.assertEqual([ "STORESCP", "localhost", 2000, 'GenericNoWildcardInDates' ], modalitiesReadback['tata']) | |
| 116 | 1265 self.assertRaises(Exception, lambda: DoPut(_REMOTE, '/modalities/toto', [ "STORESCP", "localhost", 2000, 'InvalidManufacturerName' ])) |
| 13 | 1266 self.assertTrue('store' in DoGet(_REMOTE, '/modalities/toto')) |
| 1267 self.assertTrue('store' in DoGet(_REMOTE, '/modalities/tata')) | |
| 1268 DoDelete(_REMOTE, '/modalities/toto') | |
| 1269 DoDelete(_REMOTE, '/modalities/tata') | |
| 1270 self.assertRaises(Exception, lambda: DoGet(_REMOTE, '/modalities/toto')) | |
| 1271 self.assertRaises(Exception, lambda: DoGet(_REMOTE, '/modalities/tata')) | |
| 1272 | |
| 1273 | |
| 1274 def test_update_peers(self): | |
| 1275 # curl -X PUT http://localhost:8042/peers/toto -d '["http://localhost:8042/"]' -v | |
| 1276 try: | |
| 1277 DoDelete(_REMOTE, '/peers/toto') | |
| 1278 except: | |
| 1279 pass | |
| 1280 try: | |
| 1281 DoDelete(_REMOTE, '/peers/tata') | |
| 1282 except: | |
| 1283 pass | |
| 1284 self.assertRaises(Exception, lambda: DoGet(_REMOTE, '/peers/toto')) | |
| 1285 DoPut(_REMOTE, '/peers/toto', [ 'http://localhost:8042/' ]) | |
| 1286 DoPut(_REMOTE, '/peers/tata', [ 'http://localhost:8042/', 'user', 'pass' ]) | |
| 128 | 1287 self.assertTrue('tata' in DoGet(_REMOTE, '/peers')) |
| 1288 peersReadback = DoGet(_REMOTE, '/peers?expand') | |
| 1289 self.assertEqual('http://localhost:8042/', peersReadback['tata']['Url']) | |
| 1290 self.assertEqual('user', peersReadback['tata']['Username']) | |
| 1291 self.assertFalse('Password' in peersReadback['tata']) # make sure no sensitive data is included | |
| 1292 self.assertFalse('CertificateFile' in peersReadback['tata']) # make sure no sensitive data is included | |
| 1293 self.assertFalse('CertificateKeyFile' in peersReadback['tata']) # make sure no sensitive data is included | |
| 1294 self.assertFalse('CertificateKeyPassword' in peersReadback['tata']) # make sure no sensitive data is included | |
| 1295 self.assertFalse('Pkcs11' in peersReadback['tata']) # make sure no sensitive data is included | |
| 13 | 1296 self.assertRaises(Exception, lambda: DoPut(_REMOTE, '/peers/toto', [ 'http://localhost:8042/', 'a' ])) |
| 1297 self.assertRaises(Exception, lambda: DoPut(_REMOTE, '/peers/toto', [ 'http://localhost:8042/', 'a', 'b', 'c' ])) | |
| 1298 self.assertTrue('store' in DoGet(_REMOTE, '/peers/toto')) | |
| 1299 self.assertTrue('store' in DoGet(_REMOTE, '/peers/tata')) | |
| 1300 DoDelete(_REMOTE, '/peers/toto') | |
| 1301 DoDelete(_REMOTE, '/peers/tata') | |
| 1302 self.assertRaises(Exception, lambda: DoGet(_REMOTE, '/peers/toto')) | |
| 1303 self.assertRaises(Exception, lambda: DoGet(_REMOTE, '/peers/tata')) | |
| 1304 | |
| 1305 | |
| 1306 def test_mesterhazy_modification(self): | |
| 1307 # When I modify a series ( eg. curl | |
| 1308 # http://localhost:8042/series/uidhere/modify -X POST -d | |
| 1309 # '{"Replace":{"SeriesDate":"19990101"}}' ) the modified | |
| 1310 # series is added to a new Study, instead of the existing | |
| 1311 # Study. Fixed in Orthanc 0.7.5 | |
| 1312 | |
| 1313 u = UploadInstance(_REMOTE, 'DummyCT.dcm') | |
| 1314 study = 'b9c08539-26f93bde-c81ab0d7-bffaf2cb-a4d0bdd0' | |
| 1315 series = 'f2635388-f01d497a-15f7c06b-ad7dba06-c4c599fe' | |
| 1316 | |
| 1317 modified = DoPost(_REMOTE, '/series/%s/modify' % series, | |
| 1318 json.dumps({ "Replace" : { "SeriesDate" : "19990101" }})) | |
| 1319 | |
| 1320 self.assertEqual(study, DoGet(_REMOTE, '/series/%s' % modified['ID']) ['ParentStudy']) | |
| 1321 | |
| 1322 | |
| 1323 def test_create(self): | |
| 1324 i = DoPost(_REMOTE, '/tools/create-dicom', | |
| 1325 json.dumps({ | |
| 1326 'PatientName' : 'Jodogne', | |
| 1327 'Modality' : 'CT', | |
| 58 | 1328 'SOPClassUID' : '1.2.840.10008.5.1.4.1.1.1', |
| 13 | 1329 'PixelData' : 'data:image/png;base64,iVBORw0KGgoAAAANSUhEUgAAAAUAAAAFCAYAAACNbyblAAAAHElEQVQI12P4//8/w38GIAXDIBKE0DHxgljNBAAO9TXL0Y4OHwAAAABJRU5ErkJggg==' # red dot in RGBA |
| 1330 })) | |
| 1331 | |
| 1332 self.assertEqual('Jodogne', DoGet(_REMOTE, '/instances/%s/content/PatientName' % i['ID']).strip()) | |
| 1333 self.assertEqual('CT', DoGet(_REMOTE, '/instances/%s/content/Modality' % i['ID']).strip()) | |
| 1334 | |
| 1335 png = GetImage(_REMOTE, '/instances/%s/preview' % i['ID']) | |
| 1336 self.assertEqual((5, 5), png.size) | |
| 1337 | |
| 38 | 1338 j = DoGet(_REMOTE, i['Path']) |
| 1339 self.assertEqual('Instance', j['Type']) | |
| 1340 self.assertEqual(j['ID'], i['ID']) | |
| 1341 | |
| 13 | 1342 |
| 1343 def test_pilates(self): | |
| 1344 # "SCU failed error when accessing orthanc with osirix" by | |
| 1345 # Pilates Agentur (Mar 10, 2014 at 9:33 PM) | |
| 1346 i = UploadInstance(_REMOTE, 'PilatesArgenturGEUltrasoundOsiriX.dcm')['ID'] | |
| 1347 self.assertEqual(0, len(DoGet(_LOCAL, '/patients'))) | |
| 1348 j = DoPost(_REMOTE, '/modalities/orthanctest/store', str(i), 'text/plain') | |
| 1349 self.assertEqual(1, len(DoGet(_LOCAL, '/patients'))) | |
| 1350 | |
| 1351 | |
| 1352 def test_shared_tags(self): | |
| 1353 a = UploadInstance(_REMOTE, 'Knee/T1/IM-0001-0001.dcm')['ID'] | |
| 1354 b = UploadInstance(_REMOTE, 'Knee/T1/IM-0001-0002.dcm')['ID'] | |
| 1355 p = DoGet(_REMOTE, '/patients')[0] | |
| 1356 | |
| 1357 self.assertTrue('0010,0010' in DoGet(_REMOTE, '/patients/%s/shared-tags' % p)) | |
| 1358 self.assertTrue('PatientName' in DoGet(_REMOTE, '/patients/%s/shared-tags?simplify' % p)) | |
| 1359 self.assertTrue('0008,1030' in DoGet(_REMOTE, '/patients/%s/shared-tags' % p)) | |
| 1360 self.assertTrue('StudyDescription' in DoGet(_REMOTE, '/patients/%s/shared-tags?simplify' % p)) | |
| 1361 self.assertTrue('0008,103e' in DoGet(_REMOTE, '/patients/%s/shared-tags' % p)) | |
| 1362 self.assertTrue('SeriesDescription' in DoGet(_REMOTE, '/patients/%s/shared-tags?simplify' % p)) | |
| 1363 self.assertFalse('0008,0018' in DoGet(_REMOTE, '/patients/%s/shared-tags' % p)) | |
| 1364 self.assertFalse('SOPInstanceUID' in DoGet(_REMOTE, '/patients/%s/shared-tags?simplify' % p)) | |
| 1365 | |
| 1366 self.assertTrue('0008,0018' in DoGet(_REMOTE, '/instances/%s/tags' % a)) | |
| 1367 self.assertTrue('SOPInstanceUID' in DoGet(_REMOTE, '/instances/%s/tags?simplify' % a)) | |
| 1368 | |
| 1369 | |
| 1370 def test_modules(self): | |
| 1371 a = UploadInstance(_REMOTE, 'Knee/T1/IM-0001-0001.dcm')['ID'] | |
| 1372 p = DoGet(_REMOTE, '/patients')[0] | |
| 1373 s = DoGet(_REMOTE, '/studies')[0] | |
| 1374 t = DoGet(_REMOTE, '/series')[0] | |
| 1375 | |
| 1376 self.assertTrue('0010,0010' in DoGet(_REMOTE, '/patients/%s/module' % p)) | |
| 1377 self.assertTrue('PatientName' in DoGet(_REMOTE, '/patients/%s/module?simplify' % p)) | |
| 1378 self.assertTrue('0010,0010' in DoGet(_REMOTE, '/studies/%s/module-patient' % p)) | |
| 1379 self.assertTrue('PatientName' in DoGet(_REMOTE, '/studies/%s/module-patient?simplify' % p)) | |
| 1380 self.assertTrue('0008,1030' in DoGet(_REMOTE, '/studies/%s/module' % s)) | |
| 1381 self.assertTrue('StudyDescription' in DoGet(_REMOTE, '/studies/%s/module?simplify' % s)) | |
| 1382 self.assertTrue('0008,103e' in DoGet(_REMOTE, '/series/%s/module' % p)) | |
| 1383 self.assertTrue('SeriesDescription' in DoGet(_REMOTE, '/series/%s/module?simplify' % p)) | |
| 1384 self.assertTrue('0008,0018' in DoGet(_REMOTE, '/instances/%s/module' % a)) | |
| 1385 self.assertTrue('SOPInstanceUID' in DoGet(_REMOTE, '/instances/%s/module?simplify' % a)) | |
| 1386 | |
| 1387 | |
| 1388 def test_auto_directory(self): | |
| 1389 a = UploadInstance(_REMOTE, 'Knee/T1/IM-0001-0001.dcm')['ID'] | |
| 1390 self.assertTrue('now' in DoGet(_REMOTE, '/tools')) | |
| 1391 self.assertTrue('dicom-conformance' in DoGet(_REMOTE, '/tools')) | |
|
87
4b24faec842b
test_reconstruct_json2 + test_private_tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
86
diff
changeset
|
1392 self.assertTrue('invalidate-tags' in DoGet(_REMOTE, '/tools')) |
| 13 | 1393 self.assertTrue(len(DoGet(_REMOTE, '/tools/dicom-conformance')) > 1000) |
| 1394 self.assertTrue('orthanctest' in DoGet(_REMOTE, '/modalities')) | |
| 1395 self.assertTrue('echo' in DoGet(_REMOTE, '/modalities/orthanctest')) | |
| 1396 self.assertTrue('find' in DoGet(_REMOTE, '/modalities/orthanctest')) | |
| 1397 self.assertTrue('find-instance' in DoGet(_REMOTE, '/modalities/orthanctest')) | |
| 1398 self.assertTrue('find-patient' in DoGet(_REMOTE, '/modalities/orthanctest')) | |
| 1399 self.assertTrue('find-series' in DoGet(_REMOTE, '/modalities/orthanctest')) | |
| 1400 self.assertTrue('find-study' in DoGet(_REMOTE, '/modalities/orthanctest')) | |
| 1401 self.assertTrue('store' in DoGet(_REMOTE, '/modalities/orthanctest')) | |
| 1402 self.assertTrue('store' in DoGet(_REMOTE, '/peers/peer')) | |
| 1403 self.assertTrue('matlab' in DoGet(_REMOTE, '/instances/%s/frames/0' % a)) | |
| 79 | 1404 self.assertTrue('raw' in DoGet(_REMOTE, '/instances/%s/frames/0' % a)) |
| 13 | 1405 self.assertRaises(Exception, lambda: DoGet(_REMOTE, '/tools/nope')) |
| 28 | 1406 self.assertRaises(Exception, lambda: DoGet(_REMOTE, '/nope')) |
| 1407 self.assertRaises(Exception, lambda: DoGet(_REMOTE, '/nope/nope.html')) | |
| 1408 self.assertEqual(404, DoGetRaw(_REMOTE, '/nope')[0].status) | |
| 1409 self.assertEqual(404, DoGetRaw(_REMOTE, '/nope/nope.html')[0].status) | |
| 13 | 1410 |
| 1411 | |
| 1412 def test_echo(self): | |
| 1413 DoPost(_REMOTE, '/modalities/orthanctest/echo') | |
| 1414 | |
| 1415 | |
| 1416 def test_xml(self): | |
| 1417 json = DoGet(_REMOTE, '/tools', headers = { 'accept' : 'application/json' }) | |
| 1418 xml = minidom.parseString(DoGet(_REMOTE, '/tools', headers = { 'accept' : 'application/xml' })) | |
| 1419 items = xml.getElementsByTagName('root')[0].getElementsByTagName('item') | |
| 1420 self.assertEqual(len(items), len(json)) | |
| 1421 | |
| 1422 self.assertTrue('dicom-conformance' in json) | |
| 1423 | |
| 1424 ok = False | |
| 1425 for i in items: | |
| 1426 if i.childNodes[0].data == 'dicom-conformance': | |
| 1427 ok = True | |
| 1428 self.assertTrue(ok) | |
| 1429 | |
| 1430 | |
|
46
85b2e36ed392
explicit GoogleCode source
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
45
diff
changeset
|
1431 def test_googlecode_issue_16(self): |
| 13 | 1432 i = UploadInstance(_REMOTE, 'Issue16.dcm')['ID'] |
| 1433 t = DoGet(_REMOTE, '/instances/%s/tags?simplify' % i)['FrameIncrementPointer'] | |
| 1434 self.assertEqual('0018,1063', t) | |
| 1435 | |
| 1436 | |
|
46
85b2e36ed392
explicit GoogleCode source
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
45
diff
changeset
|
1437 def test_googlecode_issue_22(self): |
| 13 | 1438 s = UploadInstance(_REMOTE, 'Issue22.dcm')['ID'] |
| 1439 a = [ | |
| 1440 "f804691f62197040438f4627c6b994f1", # Frame 0 | |
| 1441 "c69eee9a51eea3e8611e82e578897254", | |
| 1442 "315666be83e2d0111c77bc0996d84901", | |
| 1443 "3e27aa959d911172c48a1436443c72b1", | |
| 1444 "958642c9e7e9d232d3869faff546058c", | |
| 1445 "5e7ea8e3e4230cae707d143481355c59", | |
| 1446 "eda37f83558d858a596175aed8b2ad47", | |
| 1447 "486713bd2895c4ecbe0e97715ac7f80a", | |
| 1448 "091ef729eb169e67da8a0faa9631f9a8", | |
| 1449 "5aa2b8c7ffe0a483efaa8e12417686ca", | |
| 1450 "e2f39e85896fe58876654b94cd0b5013", | |
| 1451 "6fd2129e4950abbe1be053bc814d5da8", | |
| 1452 "c3331a8ba7a757f3d423735ab7fa81f9", | |
| 1453 "746f808582156734dd6b6fdfd3a0b72c", | |
| 1454 "8075ea2b227a70c60ea6b7b75a6bb190", | |
| 1455 "806b8b3e300c615099c11a5ec23465aa", | |
| 1456 "7c836aa298ba6eef96434579af631a11", | |
| 1457 "a0357dc9f4f72d73a885c33d7c287446", | |
| 1458 "f25ba3be1cc7d7fad95706adc199ea7d", | |
| 1459 "8b114c526b8cbed6cad8a3248b7b480c", | |
| 1460 "44e6670f127e612a2b4aa60a0d207698", | |
| 1461 "b8945f90fe02facf2ace24ca1ecbe0a5", | |
| 1462 "95c796c2fa8f59018b15cf2987b1f79b", | |
| 1463 "ce0a51ab30224205b44920221dc27351", # Frame 23 | |
| 1464 ] | |
| 1465 | |
| 1466 self.assertEqual(24, len(DoGet(_REMOTE, '/instances/%s/frames' % s))) | |
| 1467 self.assertRaises(Exception, lambda: DoGet(_REMOTE, '/instances/%s/frames/24/preview' % s)) | |
| 1468 | |
| 1469 for i in range(len(a)): | |
| 1470 self.assertEqual(a[i], ComputeMD5(DoGet(_REMOTE, '/instances/%s/frames/%d/preview' % (s, i)))) | |
| 1471 | |
| 1472 | |
|
46
85b2e36ed392
explicit GoogleCode source
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
45
diff
changeset
|
1473 def test_googlecode_issue_19(self): |
|
21
2a29bcff60a7
tests of image decoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
18
diff
changeset
|
1474 # This is an image with "YBR_FULL" photometric interpretation, it is not supported by Orthanc |
| 13 | 1475 # gdcmconv -i /home/jodogne/DICOM/GdcmDatabase/US_DataSet/HDI5000_US/3EAF5E01 -w -o Issue19.dcm |
| 1476 | |
| 1477 a = UploadInstance(_REMOTE, 'Issue19.dcm')['ID'] | |
|
21
2a29bcff60a7
tests of image decoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
18
diff
changeset
|
1478 self.assertRaises(Exception, lambda: DoGet(_REMOTE, '/instances/941ad3c8-05d05b88-560459f9-0eae0e20-6cddd533/preview')) |
| 13 | 1479 |
| 1480 | |
|
46
85b2e36ed392
explicit GoogleCode source
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
45
diff
changeset
|
1481 def test_googlecode_issue_37(self): |
| 13 | 1482 # Same test for issues 35 and 37. Fixed in Orthanc 0.9.1 |
| 1483 u = UploadInstance(_REMOTE, 'Beaufix/IM-0001-0001.dcm')['ID'] | |
| 1484 | |
| 1485 a = DoPost(_REMOTE, '/tools/find', { 'Level' : 'Series', | |
| 1486 'CaseSensitive' : True, | |
| 1487 'Query' : { 'StationName' : 'SMR4-MP3' }}) | |
| 1488 self.assertEqual(1, len(a)) | |
| 14 | 1489 |
| 1490 | |
| 1491 def test_rest_find(self): | |
| 1492 # Upload 8 instances | |
| 1493 for i in range(2): | |
| 1494 UploadInstance(_REMOTE, 'Brainix/Flair/IM-0001-000%d.dcm' % (i + 1)) | |
| 1495 UploadInstance(_REMOTE, 'Brainix/Epi/IM-0001-000%d.dcm' % (i + 1)) | |
| 1496 UploadInstance(_REMOTE, 'Knee/T1/IM-0001-000%d.dcm' % (i + 1)) | |
| 1497 UploadInstance(_REMOTE, 'Knee/T2/IM-0001-000%d.dcm' % (i + 1)) | |
| 1498 | |
| 1499 a = DoPost(_REMOTE, '/tools/find', { 'Level' : 'Patient', | |
| 1500 'CaseSensitive' : False, | |
| 1501 'Query' : { 'PatientName' : '*n*' }}) | |
| 1502 self.assertEqual(2, len(a)) | |
| 1503 | |
| 1504 a = DoPost(_REMOTE, '/tools/find', { 'Level' : 'Patient', | |
| 1505 'CaseSensitive' : True, | |
| 1506 'Query' : { 'PatientName' : '*n*' }}) | |
| 1507 self.assertEqual(0, len(a)) | |
| 1508 | |
| 1509 a = DoPost(_REMOTE, '/tools/find', { 'Expand' : True, | |
| 1510 'Level' : 'Patient', | |
| 1511 'CaseSensitive' : False, | |
| 1512 'Query' : { 'PatientName' : '*ne*' }}) | |
| 1513 self.assertEqual(1, len(a)) | |
| 1514 self.assertEqual('20080822', a[0]['MainDicomTags']['PatientBirthDate']) | |
| 1515 | |
| 1516 a = DoPost(_REMOTE, '/tools/find', { 'Level' : 'Patient', | |
| 1517 'CaseSensitive' : True, | |
| 1518 'Query' : { 'PatientName' : '*ne*' }}) | |
| 1519 self.assertEqual(0, len(a)) | |
| 1520 | |
| 1521 a = DoPost(_REMOTE, '/tools/find', { 'Level' : 'Study', | |
| 1522 'CaseSensitive' : True, | |
| 1523 'Query' : { 'PatientName' : '*NE*' }}) | |
| 1524 self.assertEqual(1, len(a)) | |
| 1525 | |
| 1526 a = DoPost(_REMOTE, '/tools/find', { 'Level' : 'Series', | |
| 1527 'CaseSensitive' : True, | |
| 1528 'Query' : { 'PatientName' : '*NE*' }}) | |
| 1529 self.assertEqual(2, len(a)) | |
| 1530 | |
| 1531 a = DoPost(_REMOTE, '/tools/find', { 'Level' : 'Instance', | |
| 1532 'CaseSensitive' : True, | |
| 1533 'Query' : { 'PatientName' : '*NE*' }}) | |
| 1534 self.assertEqual(4, len(a)) | |
| 1535 | |
| 1536 a = DoPost(_REMOTE, '/tools/find', { 'Level' : 'Patient', 'Query' : { }}) | |
| 1537 self.assertEqual(2, len(a)) | |
| 1538 | |
| 1539 a = DoPost(_REMOTE, '/tools/find', { 'Level' : 'Study', 'Query' : { }}) | |
| 1540 self.assertEqual(2, len(a)) | |
| 1541 | |
| 1542 a = DoPost(_REMOTE, '/tools/find', { 'Level' : 'Series', 'Query' : { }}) | |
| 1543 self.assertEqual(4, len(a)) | |
| 1544 | |
| 1545 a = DoPost(_REMOTE, '/tools/find', { 'Level' : 'Instance', 'Query' : { }}) | |
| 1546 self.assertEqual(8, len(a)) | |
| 1547 | |
| 1548 | |
| 1549 def test_rest_query_retrieve(self): | |
| 1550 self.assertEqual(0, len(DoGet(_REMOTE, '/patients'))) | |
| 1551 | |
| 1552 # Upload 8 instances | |
| 1553 for i in range(2): | |
| 1554 UploadInstance(_REMOTE, 'Brainix/Flair/IM-0001-000%d.dcm' % (i + 1)) | |
| 1555 UploadInstance(_REMOTE, 'Brainix/Epi/IM-0001-000%d.dcm' % (i + 1)) | |
| 1556 UploadInstance(_REMOTE, 'Knee/T1/IM-0001-000%d.dcm' % (i + 1)) | |
| 1557 UploadInstance(_REMOTE, 'Knee/T2/IM-0001-000%d.dcm' % (i + 1)) | |
| 1558 | |
| 1559 self.assertEqual(2, len(DoGet(_REMOTE, '/patients'))) | |
| 1560 for p in DoGet(_REMOTE, '/patients'): | |
| 1561 DoPost(_REMOTE, '/modalities/orthanctest/store', p) | |
| 1562 DoDelete(_REMOTE, '/patients/%s' % p) | |
| 1563 | |
| 1564 for q in DoGet(_REMOTE, '/queries'): | |
| 1565 DoDelete(_REMOTE, '/queries/%s' % q) | |
| 1566 | |
| 1567 self.assertEqual(0, len(DoGet(_REMOTE, '/patients'))) | |
| 1568 self.assertEqual(0, len(DoGet(_REMOTE, '/queries'))) | |
| 1569 a = DoPost(_REMOTE, '/modalities/orthanctest/query', { 'Level' : 'Series', | |
| 27 | 1570 'Query' : { |
| 1571 'PatientName' : '*NE*', | |
| 1572 'StudyDate' : '*', | |
| 1573 }})['ID'] | |
| 14 | 1574 self.assertEqual(1, len(DoGet(_REMOTE, '/queries'))) |
| 1575 | |
| 1576 b = DoGet(_REMOTE, '/queries/%s' % a) | |
| 1577 self.assertTrue('answers' in b) | |
| 1578 self.assertTrue('level' in b) | |
| 1579 self.assertTrue('modality' in b) | |
| 1580 self.assertTrue('query' in b) | |
| 1581 self.assertTrue('retrieve' in b) | |
| 1582 self.assertEqual('Series', DoGet(_REMOTE, '/queries/%s/level' % a)) | |
| 1583 self.assertEqual('orthanctest', DoGet(_REMOTE, '/queries/%s/modality' % a)) | |
| 1584 | |
| 1585 q = DoGet(_REMOTE, '/queries/%s/query?simplify' % a) | |
| 27 | 1586 self.assertEqual(2, len(q)) |
| 14 | 1587 self.assertTrue('PatientName' in q) |
| 27 | 1588 self.assertTrue('StudyDate' in q) |
| 14 | 1589 self.assertEqual('*NE*', q['PatientName']) |
| 27 | 1590 self.assertEqual('*', q['StudyDate']) |
| 14 | 1591 |
| 1592 self.assertEqual(2, len(DoGet(_REMOTE, '/queries/%s/answers' % a))) | |
| 1593 | |
| 1594 s = DoGet(_REMOTE, '/queries/%s/answers/0' % a) | |
| 1595 self.assertTrue('content' in s) | |
| 1596 self.assertTrue('retrieve' in s) | |
| 1597 | |
| 1598 s = DoGet(_REMOTE, '/queries/%s/answers/0/content?simplify' % a) | |
| 1599 self.assertEqual('887', s['PatientID']) | |
| 1600 self.assertEqual('2.16.840.1.113669.632.20.121711.10000160881', s['StudyInstanceUID']) | |
| 1601 | |
| 1602 self.assertEqual(0, len(DoGet(_REMOTE, '/patients'))) | |
| 1603 DoPost(_REMOTE, '/queries/%s/answers/0/retrieve' % a, 'ORTHANC') | |
| 1604 self.assertEqual(1, len(DoGet(_REMOTE, '/patients'))) | |
| 1605 self.assertEqual(1, len(DoGet(_REMOTE, '/studies'))) | |
| 1606 self.assertEqual(1, len(DoGet(_REMOTE, '/series'))) | |
| 1607 self.assertEqual(2, len(DoGet(_REMOTE, '/instances'))) | |
| 1608 | |
| 112 | 1609 DoPost(_REMOTE, '/queries/%s/answers/1/retrieve' % a, 'ORTHANC', 'application/json') # make sure the issue #36 is fixed (query/retrieve Rest API: /retrieve route shall accept application/json content type) |
| 14 | 1610 self.assertEqual(1, len(DoGet(_REMOTE, '/patients'))) |
| 1611 self.assertEqual(1, len(DoGet(_REMOTE, '/studies'))) | |
| 1612 self.assertEqual(2, len(DoGet(_REMOTE, '/series'))) | |
| 1613 self.assertEqual(4, len(DoGet(_REMOTE, '/instances'))) | |
| 1614 | |
| 1615 DoDelete(_REMOTE, '/queries/%s' % a) | |
| 1616 self.assertEqual(0, len(DoGet(_REMOTE, '/queries'))) | |
| 1617 | |
| 1618 | |
| 1619 def test_parent(self): | |
| 1620 u = UploadInstance(_REMOTE, 'DummyCT.dcm')['ID'] | |
| 1621 patient = '6816cb19-844d5aee-85245eba-28e841e6-2414fae2' | |
| 1622 study = 'b9c08539-26f93bde-c81ab0d7-bffaf2cb-a4d0bdd0' | |
| 1623 series = 'f2635388-f01d497a-15f7c06b-ad7dba06-c4c599fe' | |
| 1624 instance = '66a662ce-7430e543-bad44d47-0dc5a943-ec7a538d' | |
|
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|
1625 self.assertEqual(instance, u) |
| 14 | 1626 |
| 1627 a = DoGet(_REMOTE, '/studies/%s/patient' % study) | |
| 1628 self.assertEqual('Patient', a['Type']) | |
| 1629 self.assertEqual(patient, a['ID']) | |
| 1630 | |
| 1631 a = DoGet(_REMOTE, '/series/%s/patient' % series) | |
| 1632 self.assertEqual('Patient', a['Type']) | |
| 1633 self.assertEqual(patient, a['ID']) | |
| 1634 | |
| 1635 a = DoGet(_REMOTE, '/series/%s/study' % series) | |
| 1636 self.assertEqual('Study', a['Type']) | |
| 1637 self.assertEqual(study, a['ID']) | |
| 1638 | |
| 1639 a = DoGet(_REMOTE, '/instances/%s/patient' % instance) | |
| 1640 self.assertEqual('Patient', a['Type']) | |
| 1641 self.assertEqual(patient, a['ID']) | |
| 1642 | |
| 1643 a = DoGet(_REMOTE, '/instances/%s/study' % instance) | |
| 1644 self.assertEqual('Study', a['Type']) | |
| 1645 self.assertEqual(study, a['ID']) | |
| 1646 | |
| 1647 a = DoGet(_REMOTE, '/instances/%s/series' % instance) | |
| 1648 self.assertEqual('Series', a['Type']) | |
| 1649 self.assertEqual(series, a['ID']) | |
| 1650 | |
| 1651 | |
| 1652 def test_shanon(self): | |
| 1653 def Anonymize(instance, replacements = {}): | |
| 119 | 1654 return DoPost(_REMOTE, '/instances/%s/anonymize' % instance, { |
| 1655 'Replace' : replacements, | |
| 1656 'Force' : True, | |
| 1657 }, 'application/json') | |
| 14 | 1658 |
| 1659 self.assertEqual(0, len(DoGet(_REMOTE, '/instances'))) | |
| 1660 u = UploadInstance(_REMOTE, 'DummyCT.dcm')['ID'] | |
| 1661 self.assertEqual(1, len(DoGet(_REMOTE, '/instances'))) | |
| 1662 | |
| 1663 tags = [ 'PatientID', 'StudyInstanceUID', 'SeriesInstanceUID', 'SOPInstanceUID', 'DeidentificationMethod' ] | |
| 1664 ids = [ 'ozp00SjY2xG', | |
| 1665 '1.2.840.113619.2.176.2025.1499492.7391.1171285944.390', | |
| 1666 '1.2.840.113619.2.176.2025.1499492.7391.1171285944.394', | |
| 1667 '1.2.840.113619.2.176.2025.1499492.7040.1171286242.109' ] | |
| 1668 | |
| 1669 a = ExtractDicomTags(Anonymize(u), tags) | |
| 1670 for i in range(4): | |
| 1671 self.assertNotEqual(ids[i], a[i]) | |
| 1672 self.assertTrue(a[4].startswith('Orthanc')) | |
| 1673 | |
| 1674 a = ExtractDicomTags(Anonymize(u, { 'PatientName' : 'toto' }), tags) | |
| 1675 for i in range(4): | |
| 1676 self.assertNotEqual(ids[i], a[i]) | |
| 1677 self.assertFalse(a[4].startswith('Orthanc')) | |
| 1678 | |
| 1679 a = ExtractDicomTags(Anonymize(u, { 'SOPInstanceUID' : 'instance' }), tags) | |
| 1680 self.assertEqual('instance', a[3]) | |
| 1681 self.assertFalse(a[4].startswith('Orthanc')) | |
| 1682 | |
| 1683 a = ExtractDicomTags(Anonymize(u, { 'SeriesInstanceUID' : 'series' }), tags) | |
| 1684 self.assertEqual('series', a[2]) | |
| 1685 self.assertFalse(a[4].startswith('Orthanc')) | |
| 1686 | |
| 1687 a = ExtractDicomTags(Anonymize(u, { 'StudyInstanceUID' : 'study' }), tags) | |
| 1688 self.assertEqual('study', a[1]) | |
| 1689 self.assertFalse(a[4].startswith('Orthanc')) | |
| 1690 | |
| 1691 a = ExtractDicomTags(Anonymize(u, { 'PatientID' : 'patient' }), tags) | |
| 1692 self.assertEqual('patient', a[0]) | |
| 1693 self.assertFalse(a[4].startswith('Orthanc')) | |
| 1694 | |
| 1695 a = ExtractDicomTags(Anonymize(u, { 'PatientID' : 'patient', | |
| 1696 'StudyInstanceUID' : 'study', | |
| 1697 'SeriesInstanceUID' : 'series', | |
| 1698 'SOPInstanceUID' : 'instance' }), tags) | |
| 1699 self.assertEqual('patient', a[0]) | |
| 1700 self.assertFalse(a[4].startswith('Orthanc')) | |
| 1701 | |
| 1702 self.assertEqual(1, len(DoGet(_REMOTE, '/instances'))) | |
| 1703 | |
| 1704 | |
| 1705 def test_shanon_2(self): | |
| 1706 def Modify(instance, replacements = {}): | |
| 119 | 1707 return DoPost(_REMOTE, '/instances/%s/modify' % instance, { |
| 1708 'Replace' : replacements, | |
| 1709 'Force': True, | |
| 1710 }, 'application/json') | |
| 14 | 1711 |
| 1712 self.assertEqual(0, len(DoGet(_REMOTE, '/instances'))) | |
| 1713 u = UploadInstance(_REMOTE, 'DummyCT.dcm')['ID'] | |
| 1714 self.assertEqual(1, len(DoGet(_REMOTE, '/instances'))) | |
| 1715 | |
| 1716 tags = [ 'PatientID', 'StudyInstanceUID', 'SeriesInstanceUID', 'SOPInstanceUID', 'DeidentificationMethod' ] | |
| 1717 ids = [ 'ozp00SjY2xG', | |
| 1718 '1.2.840.113619.2.176.2025.1499492.7391.1171285944.390', | |
| 1719 '1.2.840.113619.2.176.2025.1499492.7391.1171285944.394', | |
| 1720 '1.2.840.113619.2.176.2025.1499492.7040.1171286242.109' ] | |
| 1721 | |
| 1722 a = ExtractDicomTags(Modify(u), tags) | |
| 1723 self.assertEqual(ids[0], a[0]) | |
| 1724 self.assertEqual(ids[1], a[1]) | |
| 1725 self.assertEqual(ids[2], a[2]) | |
| 1726 self.assertNotEqual(ids[3], a[3]) | |
| 1727 self.assertEqual(0, len(a[4])) | |
| 1728 | |
| 1729 a = ExtractDicomTags(Modify(u, { 'SOPInstanceUID' : 'instance' }), tags) | |
| 1730 self.assertEqual(ids[0], a[0]) | |
| 1731 self.assertEqual(ids[1], a[1]) | |
| 1732 self.assertEqual(ids[2], a[2]) | |
| 1733 self.assertEqual('instance', a[3]) | |
| 1734 | |
| 1735 a = ExtractDicomTags(Modify(u, { 'SeriesInstanceUID' : 'series' }), tags) | |
| 1736 self.assertEqual(ids[0], a[0]) | |
| 1737 self.assertEqual(ids[1], a[1]) | |
| 1738 self.assertEqual('series', a[2]) | |
| 1739 self.assertNotEqual(ids[3], a[3]) | |
| 1740 | |
| 1741 a = ExtractDicomTags(Modify(u, { 'StudyInstanceUID' : 'study' }), tags) | |
| 1742 self.assertEqual(ids[0], a[0]) | |
| 1743 self.assertEqual('study', a[1]) | |
| 1744 self.assertNotEqual(ids[2], a[2]) | |
| 1745 self.assertNotEqual(ids[3], a[3]) | |
| 1746 | |
| 1747 a = ExtractDicomTags(Modify(u, { 'PatientID' : 'patient' }), tags) | |
| 1748 self.assertEqual('patient', a[0]) | |
| 1749 self.assertNotEqual(ids[1], a[1]) | |
| 1750 self.assertNotEqual(ids[2], a[2]) | |
| 1751 self.assertNotEqual(ids[3], a[3]) | |
| 1752 | |
| 1753 a = ExtractDicomTags(Modify(u, { 'PatientID' : 'patient', | |
| 1754 'StudyInstanceUID' : 'study', | |
| 1755 'SeriesInstanceUID' : 'series', | |
| 1756 'SOPInstanceUID' : 'instance' }), tags) | |
| 1757 self.assertEqual('patient', a[0]) | |
| 1758 self.assertEqual('study', a[1]) | |
| 1759 self.assertEqual('series', a[2]) | |
| 1760 self.assertEqual('instance', a[3]) | |
| 1761 | |
| 1762 self.assertEqual(1, len(DoGet(_REMOTE, '/instances'))) | |
| 1763 | |
| 1764 | |
| 1765 def test_instances_tags(self): | |
| 1766 a = UploadInstance(_REMOTE, 'Knee/T1/IM-0001-0001.dcm')['ID'] | |
| 1767 b = UploadInstance(_REMOTE, 'Knee/T2/IM-0001-0001.dcm')['ID'] | |
| 1768 #a = UploadInstance(_REMOTE, 'Cardiac/MR.X.1.2.276.0.7230010.3.1.4.2831157719.2256.1336386937.676343')['ID'] | |
| 1769 #b = UploadInstance(_REMOTE, 'Cardiac/MR.X.1.2.276.0.7230010.3.1.4.2831157719.2256.1336386925.676329')['ID'] | |
| 1770 | |
| 1771 i = DoGet(_REMOTE, '/patients/%s/instances-tags?simplify' % DoGet(_REMOTE, '/patients')[0]) | |
| 1772 self.assertEqual(2, len(i)) | |
| 1773 self.assertEqual('887', i[i.keys()[0]]['PatientID']) | |
| 1774 self.assertEqual('887', i[i.keys()[1]]['PatientID']) | |
| 1775 | |
| 1776 i = DoGet(_REMOTE, '/patients/%s/instances-tags?simplify' % DoGet(_REMOTE, '/studies')[0]) | |
| 1777 self.assertEqual(2, len(i)) | |
| 1778 self.assertEqual('887', i[i.keys()[0]]['PatientID']) | |
| 1779 self.assertEqual('887', i[i.keys()[1]]['PatientID']) | |
| 1780 | |
| 1781 self.assertEqual(2, len(DoGet(_REMOTE, '/series'))) | |
| 1782 i = DoGet(_REMOTE, '/patients/%s/instances-tags?simplify' % DoGet(_REMOTE, '/series')[0]) | |
| 1783 self.assertEqual(1, len(i)) | |
| 1784 self.assertEqual('887', i[i.keys()[0]]['PatientID']) | |
| 1785 | |
| 1786 i = DoGet(_REMOTE, '/patients/%s/instances-tags?simplify' % DoGet(_REMOTE, '/series')[1]) | |
| 1787 self.assertEqual(1, len(i)) | |
| 1788 self.assertEqual('887', i[i.keys()[0]]['PatientID']) | |
| 1789 | |
| 1790 | |
| 1791 def test_lookup(self): | |
| 1792 a = DoPost(_REMOTE, '/tools/lookup', 'ozp00SjY2xG') | |
| 1793 self.assertEqual(0, len(a)) | |
| 1794 | |
| 1795 UploadInstance(_REMOTE, 'DummyCT.dcm') | |
| 1796 | |
| 1797 a = DoPost(_REMOTE, '/tools/lookup', 'ozp00SjY2xG') | |
| 1798 self.assertEqual(1, len(a)) | |
| 1799 self.assertEqual('Patient', a[0]['Type']) | |
| 1800 self.assertEqual('6816cb19-844d5aee-85245eba-28e841e6-2414fae2', a[0]['ID']) | |
| 1801 self.assertEqual('/patients/%s' % a[0]['ID'], a[0]['Path']) | |
| 1802 | |
| 1803 a = DoPost(_REMOTE, '/tools/lookup', '1.2.840.113619.2.176.2025.1499492.7391.1171285944.390') | |
| 1804 self.assertEqual(1, len(a)) | |
| 1805 self.assertEqual('Study', a[0]['Type']) | |
| 1806 self.assertEqual('b9c08539-26f93bde-c81ab0d7-bffaf2cb-a4d0bdd0', a[0]['ID']) | |
| 1807 self.assertEqual('/studies/%s' % a[0]['ID'], a[0]['Path']) | |
| 1808 | |
| 1809 a = DoPost(_REMOTE, '/tools/lookup', '1.2.840.113619.2.176.2025.1499492.7391.1171285944.394') | |
| 1810 self.assertEqual(1, len(a)) | |
| 1811 self.assertEqual('Series', a[0]['Type']) | |
| 1812 self.assertEqual('f2635388-f01d497a-15f7c06b-ad7dba06-c4c599fe', a[0]['ID']) | |
| 1813 self.assertEqual('/series/%s' % a[0]['ID'], a[0]['Path']) | |
| 1814 | |
| 1815 a = DoPost(_REMOTE, '/tools/lookup', '1.2.840.113619.2.176.2025.1499492.7040.1171286242.109') | |
| 1816 self.assertEqual(1, len(a)) | |
| 1817 self.assertEqual('Instance', a[0]['Type']) | |
| 1818 self.assertEqual('66a662ce-7430e543-bad44d47-0dc5a943-ec7a538d', a[0]['ID']) | |
| 1819 self.assertEqual('/instances/%s' % a[0]['ID'], a[0]['Path']) | |
| 1820 | |
| 1821 DropOrthanc(_REMOTE) | |
| 1822 a = DoPost(_REMOTE, '/tools/lookup', '3113719P') | |
| 1823 self.assertEqual(0, len(a)) | |
| 1824 | |
| 15 | 1825 |
| 1826 def test_autorouting(self): | |
| 1827 knee1 = 'Knee/T1/IM-0001-0001.dcm' | |
| 1828 knee2 = 'Knee/T2/IM-0001-0002.dcm' | |
| 1829 other = 'Brainix/Flair/IM-0001-0001.dcm' | |
| 1830 | |
| 1831 # Check that this version is >= 0.8.0 | |
| 1832 self.assertTrue(IsDefinedInLua(_REMOTE, '_InitializeJob')) | |
| 1833 self.assertTrue('orthanctest' in DoGet(_REMOTE, '/modalities')) | |
| 1834 | |
| 1835 UploadInstance(_REMOTE, knee1) | |
| 1836 self.assertEqual(0, len(DoGet(_LOCAL, '/instances'))) | |
| 1837 | |
| 1838 DropOrthanc(_REMOTE) | |
| 1839 DropOrthanc(_LOCAL) | |
| 1840 InstallLuaScript('Lua/Autorouting.lua') | |
| 1841 UploadInstance(_REMOTE, knee1) | |
| 1842 UploadInstance(_REMOTE, knee2) | |
| 1843 UploadInstance(_REMOTE, other) | |
| 1844 WaitEmpty(_REMOTE) | |
| 1845 UninstallLuaCallbacks() | |
| 1846 self.assertEqual(3, len(DoGet(_LOCAL, '/instances'))) | |
| 1847 | |
| 1848 DropOrthanc(_REMOTE) | |
| 1849 DropOrthanc(_LOCAL) | |
| 1850 InstallLuaScript('Lua/AutoroutingConditional.lua') | |
| 1851 UploadInstance(_REMOTE, knee1) | |
| 1852 UploadInstance(_REMOTE, knee2) | |
| 1853 UploadInstance(_REMOTE, other) | |
| 1854 WaitEmpty(_REMOTE) | |
| 1855 UninstallLuaCallbacks() | |
| 1856 self.assertEqual(2, len(DoGet(_LOCAL, '/instances'))) | |
| 1857 | |
| 1858 DropOrthanc(_REMOTE) | |
| 1859 DropOrthanc(_LOCAL) | |
| 1860 InstallLuaScript('Lua/AutoroutingModification.lua') | |
| 1861 UploadInstance(_REMOTE, knee1) | |
| 1862 WaitEmpty(_REMOTE) | |
| 1863 UninstallLuaCallbacks() | |
| 1864 i = DoGet(_LOCAL, '/instances') | |
| 1865 self.assertEqual(1, len(i)) | |
| 1866 | |
| 1867 with tempfile.NamedTemporaryFile(delete = True) as f: | |
| 1868 f.write(DoGet(_LOCAL, '/instances/%s/file' % i[0])) | |
| 1869 f.flush() | |
| 45 | 1870 routed = subprocess.check_output([ FindExecutable('dcm2xml'), f.name ]) |
| 15 | 1871 self.assertEqual('My Medical Device', re.search('"StationName">(.*?)<', routed).group(1).strip()) |
| 1872 self.assertEqual(None, re.search('"MilitaryRank"', routed)) | |
| 1873 self.assertEqual(None, re.search('"0051,0010"', routed)) # A private tag | |
| 17 | 1874 |
| 1875 | |
| 1876 def test_storescu_rf(self): | |
| 1877 i = UploadInstance(_REMOTE, 'KarstenHilbertRF.dcm')['ID'] | |
| 1878 self.assertEqual(0, len(DoGet(_LOCAL, '/instances'))) | |
| 1879 j = DoPost(_REMOTE, '/modalities/orthanctest/store', str(i), 'text/plain') | |
| 1880 self.assertEqual(1, len(DoGet(_LOCAL, '/instances'))) | |
| 18 | 1881 |
| 1882 | |
| 1883 def test_anonymize_instance(self): | |
| 1884 def AnonymizeAndUpload(instanceId, parameters): | |
| 1885 return DoPost(_REMOTE, '/instances', DoPost(_REMOTE, '/instances/%s/anonymize' % instanceId, parameters, | |
| 1886 'application/json'), 'application/dicom')['ID'] | |
| 1887 | |
| 1888 def ModifyAndUpload(instanceId, parameters): | |
| 1889 return DoPost(_REMOTE, '/instances', DoPost(_REMOTE, '/instances/%s/modify' % instanceId, parameters, | |
| 1890 'application/json'), 'application/dicom')['ID'] | |
| 1891 | |
| 1892 a = UploadInstance(_REMOTE, 'PrivateMDNTags.dcm')['ID'] | |
| 1893 s1 = DoGet(_REMOTE, '/instances/%s/content/PatientName' % a) | |
| 1894 s2 = DoGet(_REMOTE, '/instances/%s/content/00e1-10c2' % a) # Some private tag | |
| 1895 s3 = DoGet(_REMOTE, '/instances/%s/content/StudyDescription' % a) | |
| 1896 s4 = DoGet(_REMOTE, '/instances/%s/content/SeriesDescription' % a) | |
| 1897 s5 = DoGet(_REMOTE, '/instances/%s/content/InstitutionName' % a) | |
| 1898 | |
| 1899 b = AnonymizeAndUpload(a, '{}') | |
| 1900 self.assertNotEqual(s1, DoGet(_REMOTE, '/instances/%s/content/PatientName' % b)) | |
| 1901 self.assertRaises(Exception, lambda: DoGet(_REMOTE, '/instances/%s/content/00e1-10c2' % b)) | |
| 1902 | |
| 1903 # Keep private tag (only OK since Orthanc 0.8.0) | |
| 1904 b = AnonymizeAndUpload(a, '{"Keep":["00e1-10c2"]}') | |
| 1905 self.assertNotEqual(s1, DoGet(_REMOTE, '/instances/%s/content/PatientName' % b)) | |
| 1906 self.assertEqual(s2, DoGet(_REMOTE, '/instances/%s/content/00e1-10c2' % b)) | |
| 1907 | |
| 1908 b = AnonymizeAndUpload(a, '{"Keep":["00e1,10c2","PatientName"]}') | |
| 1909 self.assertEqual(s1, DoGet(_REMOTE, '/instances/%s/content/PatientName' % b)) | |
| 1910 self.assertEqual(s2, DoGet(_REMOTE, '/instances/%s/content/00e1-10c2' % b)) | |
| 1911 | |
| 1912 b = AnonymizeAndUpload(a, '{"Keep":["PatientName"],"Replace":{"00e1,10c2":"Hello"}}') | |
| 1913 self.assertEqual(s1, DoGet(_REMOTE, '/instances/%s/content/PatientName' % b)) | |
| 1914 self.assertTrue(DoGet(_REMOTE, '/instances/%s/content/00e1-10c2' % b).startswith('Hello')) | |
| 1915 | |
| 1916 # Examples from the Wiki | |
|
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1917 b = AnonymizeAndUpload(a, '{"Replace":{"PatientName":"hello","0010-0020":"world"},"Keep":["StudyDescription", "SeriesDescription"],"KeepPrivateTags": true,"Force":true}') |
| 18 | 1918 self.assertEqual('hello', DoGet(_REMOTE, '/instances/%s/content/0010-0010' % b).strip()) |
| 1919 self.assertEqual('world', DoGet(_REMOTE, '/instances/%s/content/PatientID' % b).strip()) | |
| 1920 self.assertEqual(s3, DoGet(_REMOTE, '/instances/%s/content/0008,1030' % b)) | |
| 1921 self.assertEqual(s4, DoGet(_REMOTE, '/instances/%s/content/0008,103e' % b)) | |
| 1922 self.assertEqual(s4, DoGet(_REMOTE, '/instances/%s/content/0008-103E' % b)) | |
| 1923 self.assertEqual(s2, DoGet(_REMOTE, '/instances/%s/content/00e1-10c2' % b)) | |
| 1924 DoGet(_REMOTE, '/instances/%s/content/InstitutionName' % a) | |
| 1925 self.assertRaises(Exception, lambda: DoGet(_REMOTE, '/instances/%s/content/InstitutionName' % b)) | |
| 1926 | |
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1927 b = ModifyAndUpload(a, '{"Replace":{"PatientName":"hello","PatientID":"world"},"Remove":["InstitutionName"],"RemovePrivateTags": true,"Force":true}') |
| 18 | 1928 self.assertEqual('hello', DoGet(_REMOTE, '/instances/%s/content/0010-0010' % b).strip()) |
| 1929 self.assertEqual('world', DoGet(_REMOTE, '/instances/%s/content/PatientID' % b).strip()) | |
| 1930 self.assertEqual(s3, DoGet(_REMOTE, '/instances/%s/content/0008,1030' % b)) | |
| 1931 self.assertEqual(s4, DoGet(_REMOTE, '/instances/%s/content/0008,103e' % b)) | |
| 1932 self.assertRaises(Exception, lambda: DoGet(_REMOTE, '/instances/%s/content/00e1-10c2' % b)) | |
| 1933 self.assertRaises(Exception, lambda: DoGet(_REMOTE, '/instances/%s/content/InstitutionName' % b)) | |
| 1934 | |
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1935 b = ModifyAndUpload(a, '{"Replace":{"PatientName":"hello","PatientID":"world"},"Force":true}') |
| 18 | 1936 self.assertEqual('hello', DoGet(_REMOTE, '/instances/%s/content/0010-0010' % b).strip()) |
| 1937 self.assertEqual('world', DoGet(_REMOTE, '/instances/%s/content/PatientID' % b).strip()) | |
| 1938 self.assertEqual(s2, DoGet(_REMOTE, '/instances/%s/content/00e1,10c2' % b)) | |
| 1939 self.assertEqual(s3, DoGet(_REMOTE, '/instances/%s/content/0008,1030' % b)) | |
| 1940 self.assertEqual(s4, DoGet(_REMOTE, '/instances/%s/content/0008-103E' % b)) | |
| 1941 self.assertEqual(s5, DoGet(_REMOTE, '/instances/%s/content/InstitutionName' % b)) | |
| 1942 | |
| 1943 | |
| 1944 # Test modify non-existing | |
| 1945 i = DoPost(_REMOTE, '/tools/create-dicom', | |
| 1946 json.dumps({ | |
| 1947 'PatientName' : 'Jodogne', | |
| 1948 'Modality' : 'CT', | |
| 1949 }))['ID'] | |
| 1950 | |
| 1951 self.assertEqual('Jodogne', DoGet(_REMOTE, '/instances/%s/content/PatientName' % i).strip()) | |
| 1952 self.assertRaises(Exception, lambda: DoGet(_REMOTE, '/instances/%s/content/StudyDescription' % i)) | |
| 1953 self.assertEqual('CT', DoGet(_REMOTE, '/instances/%s/content/Modality' % i).strip()) | |
| 1954 | |
| 1955 b = ModifyAndUpload(i, '{"Replace":{"StudyDescription":"hello","Modality":"world"}}') | |
| 1956 self.assertEqual('Jodogne', DoGet(_REMOTE, '/instances/%s/content/PatientName' % b).strip()) | |
| 1957 self.assertEqual('hello', DoGet(_REMOTE, '/instances/%s/content/StudyDescription' % b).strip()) | |
| 1958 self.assertEqual('world', DoGet(_REMOTE, '/instances/%s/content/Modality' % b).strip()) | |
| 1959 | |
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1960 |
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1961 def test_incoming_jpeg(self): |
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1962 def storescu(image, acceptUnknownSopClassUid): |
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1963 if acceptUnknownSopClassUid: |
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1964 tmp = [ '-xf', GetDatabasePath('UnknownSopClassUid.cfg'), 'Default' ] |
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1965 else: |
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1966 tmp = [ '-xs' ] |
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1967 |
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1968 with open(os.devnull, 'w') as FNULL: |
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1969 subprocess.check_call([ FindExecutable('storescu') ] + tmp + |
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1970 [ _REMOTE['Server'], str(_REMOTE['DicomPort']), |
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1971 GetDatabasePath(image) ], |
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1972 stderr = FNULL) |
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1973 |
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1974 self.assertEqual(0, len(DoGet(_REMOTE, '/patients'))) |
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1975 InstallLuaScript('Lua/TransferSyntaxDisable.lua') |
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1976 self.assertRaises(Exception, lambda: storescu('Knix/Loc/IM-0001-0001.dcm', False)) |
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1977 self.assertRaises(Exception, lambda: storescu('UnknownSopClassUid.dcm', True)) |
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1978 self.assertEqual(0, len(DoGet(_REMOTE, '/patients'))) |
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1979 InstallLuaScript('Lua/TransferSyntaxEnable.lua') |
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1980 DoPost(_REMOTE, '/tools/execute-script', "print('All special transfer syntaxes are now accepted')") |
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1981 storescu('Knix/Loc/IM-0001-0001.dcm', False) |
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1982 storescu('UnknownSopClassUid.dcm', True) |
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1983 self.assertEqual(2, len(DoGet(_REMOTE, '/patients'))) |
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1984 |
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1985 |
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1986 def test_storescu_jpeg(self): |
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1987 self.assertEqual(0, len(DoGet(_REMOTE, '/exports')['Exports'])) |
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1988 |
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1989 knixStudy = 'b9c08539-26f93bde-c81ab0d7-bffaf2cb-a4d0bdd0' |
| 64 | 1990 i = UploadInstance(_REMOTE, 'Knix/Loc/IM-0001-0001.dcm')['ID'] |
| 1991 | |
| 1992 # This is JPEG lossless | |
| 1993 self.assertEqual('1.2.840.10008.1.2.4.70', DoGet(_REMOTE, '/instances/%s/header?simplify' % i)['TransferSyntaxUID']) | |
| 1994 | |
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1995 UploadInstance(_REMOTE, 'Knix/Loc/IM-0001-0002.dcm') |
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1996 UploadInstance(_REMOTE, 'Knix/Loc/IM-0001-0003.dcm') |
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1997 |
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1998 a = UploadInstance(_REMOTE, 'Brainix/Flair/IM-0001-0001.dcm')['ID'] |
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1999 b = UploadInstance(_REMOTE, 'ColorTestImageJ.dcm')['ID'] |
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2000 self.assertEqual(0, len(DoGet(_LOCAL, '/instances'))) |
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2001 DoPost(_REMOTE, '/modalities/orthanctest/store', [ knixStudy, a, b ]) |
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2002 self.assertEqual(5, len(DoGet(_LOCAL, '/instances'))) |
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2003 |
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2004 self.assertEqual(3, len(DoGet(_REMOTE, '/exports')['Exports'])) |
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2005 |
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2006 DropOrthanc(_REMOTE) |
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2007 self.assertEqual(0, len(DoGet(_REMOTE, '/exports')['Exports'])) |
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2008 |
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2009 |
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2010 def test_pixel_data(self): |
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2011 jpeg = UploadInstance(_REMOTE, 'Knix/Loc/IM-0001-0001.dcm')['ID'] |
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2012 color = UploadInstance(_REMOTE, 'ColorTestImageJ.dcm')['ID'] |
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2013 phenix = UploadInstance(_REMOTE, 'Phenix/IM-0001-0001.dcm')['ID'] |
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2014 |
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2015 phenixSize = 358 * 512 * 2 |
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2016 colorSize = 1000 * 1000 * 3 |
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2017 jpegSize = 51918 |
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2018 |
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2019 self.assertEqual(1, len(DoGet(_REMOTE, '/instances/%s/content/7fe0-0010' % phenix))) |
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2020 self.assertEqual(1, len(DoGet(_REMOTE, '/instances/%s/content/7fe0-0010' % color))) |
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2021 self.assertEqual(2, len(DoGet(_REMOTE, '/instances/%s/content/7fe0-0010' % jpeg))) |
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2022 |
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2023 self.assertEqual(0, len(DoGet(_REMOTE, '/instances/%s/content/7fe0-0010/0' % jpeg))) |
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2024 self.assertEqual(jpegSize, len(DoGet(_REMOTE, '/instances/%s/content/7fe0-0010/1' % jpeg))) |
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2025 |
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2026 self.assertEqual(phenixSize, len(DoGet(_REMOTE, '/instances/%s/content/7fe0-0010/0' % phenix))) |
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2027 self.assertEqual(colorSize, len(DoGet(_REMOTE, '/instances/%s/content/7fe0-0010/0' % color))) |
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2028 |
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2029 |
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2030 def test_decode_brainix(self): |
|
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2031 brainix = [ |
|
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2032 UploadInstance(_REMOTE, 'Brainix/Epi/IM-0001-0001.dcm')['ID'], # (*) |
|
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2033 UploadInstance(_REMOTE, 'Formats/JpegLossless.dcm')['ID'], # JPEG-LS, same as (*) (since Orthanc 0.7.6) |
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2034 UploadInstance(_REMOTE, 'Formats/Jpeg.dcm')['ID'], # JPEG, same as (*) (since Orthanc 0.7.6) |
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2035 ] |
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2036 h = '6fb11b932d535c2be04beabd99793ff8' |
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2037 maxValue = 426.0 |
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2038 |
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2039 truth = Image.open(GetDatabasePath('Formats/Brainix.png')) |
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2040 for i in brainix: |
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2041 self.AssertSameImages(truth.getdata(), '/instances/%s/image-int16' % i) |
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2042 self.AssertSameImages(truth.getdata(), '/instances/%s/image-uint16' % i) |
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2043 |
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2044 truth2 = map(lambda x: min(255, x), truth.getdata()) |
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2045 for i in brainix: |
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2046 self.AssertSameImages(truth2, '/instances/%s/image-uint8' % i) |
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2047 |
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2048 truth2 = map(lambda x: x * 255.0 / maxValue, truth.getdata()) |
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2049 for i in brainix: |
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2050 self.AssertSameImages(truth2, '/instances/%s/preview' % i) |
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2051 |
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2052 for i in brainix: |
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2053 self.assertEqual(h, ComputeMD5(DoGet(_REMOTE, '/instances/%s/matlab' % i))) |
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2054 |
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2055 |
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2056 def test_decode_color(self): |
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2057 imagej = UploadInstance(_REMOTE, 'ColorTestImageJ.dcm')['ID'] |
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2058 color = UploadInstance(_REMOTE, 'ColorTestMalaterre.dcm')['ID'] |
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2059 |
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2060 for i in [ imagej, color ]: |
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2061 for j in [ 'image-uint8', 'image-uint16', 'image-int16' ]: |
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2062 self.assertRaises(Exception, lambda: DoGet(_REMOTE, '/instances/%s/%s' % (i, j))) |
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2063 |
|
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|
2064 self.assertEqual('c14c687f7a1ea9fe022479fc87c67274', ComputeMD5(DoGet(_REMOTE, '/instances/%s/preview' % imagej))) |
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2065 self.assertEqual('a87d122918a56f803bcfe9d2586b9125', ComputeMD5(DoGet(_REMOTE, '/instances/%s/preview' % color))) |
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2066 |
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2067 self.assertEqual('30cc46bfa7aba77a40e4178f6184c25a', ComputeMD5(DoGet(_REMOTE, '/instances/%s/matlab' % imagej))) |
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2068 self.assertEqual('ff195005cef06b59666fd220a9b4cd9a', ComputeMD5(DoGet(_REMOTE, '/instances/%s/matlab' % color))) |
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2069 |
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2070 |
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2071 def test_decode_rf(self): |
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2072 rf = UploadInstance(_REMOTE, 'KarstenHilbertRF.dcm')['ID'] |
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2073 truth = Image.open(GetDatabasePath('Formats/KarstenHilbertRF.png')) |
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2074 |
|
2a29bcff60a7
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parents:
18
diff
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|
2075 self.AssertSameImages(truth.getdata(), '/instances/%s/image-uint8' % rf) |
|
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tests of image decoding
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parents:
18
diff
changeset
|
2076 self.AssertSameImages(truth.getdata(), '/instances/%s/image-uint16' % rf) |
|
2a29bcff60a7
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parents:
18
diff
changeset
|
2077 self.AssertSameImages(truth.getdata(), '/instances/%s/image-int16' % rf) |
|
2a29bcff60a7
tests of image decoding
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parents:
18
diff
changeset
|
2078 self.AssertSameImages(truth.getdata(), '/instances/%s/preview' % rf) |
|
2a29bcff60a7
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parents:
18
diff
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|
2079 |
|
2a29bcff60a7
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parents:
18
diff
changeset
|
2080 self.assertEqual('42254d70efd2f4a1b8f3455909689f0e', ComputeMD5(DoGet(_REMOTE, '/instances/%s/matlab' % rf))) |
|
2a29bcff60a7
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Sebastien Jodogne <s.jodogne@gmail.com>
parents:
18
diff
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|
2081 |
|
2a29bcff60a7
tests of image decoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
18
diff
changeset
|
2082 |
|
2a29bcff60a7
tests of image decoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
18
diff
changeset
|
2083 def test_decode_multiframe(self): |
|
2a29bcff60a7
tests of image decoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
18
diff
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|
2084 mf = UploadInstance(_REMOTE, 'Multiframe.dcm')['ID'] |
|
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Sebastien Jodogne <s.jodogne@gmail.com>
parents:
18
diff
changeset
|
2085 |
|
2a29bcff60a7
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parents:
18
diff
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|
2086 # Test the first frame |
|
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tests of image decoding
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parents:
18
diff
changeset
|
2087 truth = Image.open(GetDatabasePath('Formats/Multiframe0.png')) |
|
2a29bcff60a7
tests of image decoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
18
diff
changeset
|
2088 self.AssertSameImages(truth.getdata(), '/instances/%s/image-uint8' % mf) |
|
2a29bcff60a7
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parents:
18
diff
changeset
|
2089 self.AssertSameImages(truth.getdata(), '/instances/%s/image-uint16' % mf) |
|
2a29bcff60a7
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parents:
18
diff
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|
2090 self.AssertSameImages(truth.getdata(), '/instances/%s/image-int16' % mf) |
|
2a29bcff60a7
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parents:
18
diff
changeset
|
2091 self.AssertSameImages(truth.getdata(), '/instances/%s/preview' % mf) |
|
2a29bcff60a7
tests of image decoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
18
diff
changeset
|
2092 self.assertEqual('9812b99d93bbcd4e7684ded089b5dfb3', ComputeMD5(DoGet(_REMOTE, '/instances/%s/matlab' % mf))) |
|
2a29bcff60a7
tests of image decoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
18
diff
changeset
|
2093 |
|
2a29bcff60a7
tests of image decoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
18
diff
changeset
|
2094 self.AssertSameImages(truth.getdata(), '/instances/%s/frames/0/image-uint16' % mf) |
|
2a29bcff60a7
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Sebastien Jodogne <s.jodogne@gmail.com>
parents:
18
diff
changeset
|
2095 |
|
2a29bcff60a7
tests of image decoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
18
diff
changeset
|
2096 # Test the last frame |
|
2a29bcff60a7
tests of image decoding
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parents:
18
diff
changeset
|
2097 truth = Image.open(GetDatabasePath('Formats/Multiframe75.png')) |
|
2a29bcff60a7
tests of image decoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
18
diff
changeset
|
2098 self.AssertSameImages(truth.getdata(), '/instances/%s/frames/75/image-uint16' % mf) |
|
2a29bcff60a7
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parents:
18
diff
changeset
|
2099 |
|
2a29bcff60a7
tests of image decoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
18
diff
changeset
|
2100 |
|
2a29bcff60a7
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Sebastien Jodogne <s.jodogne@gmail.com>
parents:
18
diff
changeset
|
2101 def test_decode_signed(self): |
|
2a29bcff60a7
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parents:
18
diff
changeset
|
2102 signed = UploadInstance(_REMOTE, 'SignedCT.dcm')['ID'] |
|
2a29bcff60a7
tests of image decoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
18
diff
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|
2103 minValue = -2000 |
|
2a29bcff60a7
tests of image decoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
18
diff
changeset
|
2104 maxValue = 4042 |
|
2a29bcff60a7
tests of image decoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
18
diff
changeset
|
2105 |
|
2a29bcff60a7
tests of image decoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
18
diff
changeset
|
2106 truth = Image.open(GetDatabasePath('Formats/SignedCT.png')) |
|
2a29bcff60a7
tests of image decoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
18
diff
changeset
|
2107 self.AssertSameImages(truth.getdata(), '/instances/%s/image-int16' % signed) |
|
2a29bcff60a7
tests of image decoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
18
diff
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|
2108 |
|
2a29bcff60a7
tests of image decoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
18
diff
changeset
|
2109 truth2 = map(lambda x: 0 if x >= 32768 else x, truth.getdata()) |
|
2a29bcff60a7
tests of image decoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
18
diff
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|
2110 self.AssertSameImages(truth2, '/instances/%s/image-uint16' % signed) |
|
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tests of image decoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
18
diff
changeset
|
2111 |
|
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Sebastien Jodogne <s.jodogne@gmail.com>
parents:
18
diff
changeset
|
2112 truth3 = map(lambda x: 255 if x >= 256 else x, truth2) |
|
2a29bcff60a7
tests of image decoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
18
diff
changeset
|
2113 self.AssertSameImages(truth3, '/instances/%s/image-uint8' % signed) |
|
2a29bcff60a7
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Sebastien Jodogne <s.jodogne@gmail.com>
parents:
18
diff
changeset
|
2114 |
|
2a29bcff60a7
tests of image decoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
18
diff
changeset
|
2115 tmp = map(lambda x: x - 65536 if x >= 32768 else x, truth.getdata()) |
|
2a29bcff60a7
tests of image decoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
18
diff
changeset
|
2116 tmp = map(lambda x: (255.0 * (x - minValue)) / (maxValue - minValue), tmp) |
|
2a29bcff60a7
tests of image decoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
18
diff
changeset
|
2117 self.AssertSameImages(tmp, '/instances/%s/preview' % signed) |
|
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Sebastien Jodogne <s.jodogne@gmail.com>
parents:
18
diff
changeset
|
2118 |
|
2a29bcff60a7
tests of image decoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
18
diff
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|
2119 self.assertEqual('b57e6c872a3da50877c7da689b03a444', ComputeMD5(DoGet(_REMOTE, '/instances/%s/matlab' % signed))) |
| 22 | 2120 |
| 2121 | |
|
46
85b2e36ed392
explicit GoogleCode source
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
45
diff
changeset
|
2122 def test_googlecode_issue_32(self): |
|
92
dbcbffb889da
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diff
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|
2123 self.assertRaises(Exception, lambda: DoPut(_REMOTE, '/tools/default-encoding', 'nope')) |
|
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parents:
89
diff
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|
2124 self.assertEqual('Windows1251', DoPut(_REMOTE, '/tools/default-encoding', 'Windows1251')) |
|
dbcbffb889da
test_findscu_encoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
89
diff
changeset
|
2125 self.assertEqual('Windows1251', DoGet(_REMOTE, '/tools/default-encoding')) |
|
dbcbffb889da
test_findscu_encoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
89
diff
changeset
|
2126 |
| 22 | 2127 f = UploadInstance(_REMOTE, 'Issue32.dcm')['ID'] |
| 2128 tags = DoGet(_REMOTE, '/instances/%s/tags?simplify' % f) | |
| 2129 self.assertEqual(u'Рентгенография', tags['SeriesDescription']) | |
| 2130 self.assertEqual(u'Таз', tags['BodyPartExamined']) | |
| 2131 self.assertEqual(u'Прямая', tags['ViewPosition']) | |
| 2132 | |
|
92
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parents:
89
diff
changeset
|
2133 # Replay the same test using Latin1 as default encoding: This must fail |
|
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parents:
89
diff
changeset
|
2134 self.assertEqual('Latin1', DoPut(_REMOTE, '/tools/default-encoding', 'Latin1')) |
|
dbcbffb889da
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Sebastien Jodogne <s.jodogne@gmail.com>
parents:
89
diff
changeset
|
2135 |
|
dbcbffb889da
test_findscu_encoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
89
diff
changeset
|
2136 DoDelete(_REMOTE, '/instances/%s' % f) |
|
dbcbffb889da
test_findscu_encoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
89
diff
changeset
|
2137 f = UploadInstance(_REMOTE, 'Issue32.dcm')['ID'] |
|
dbcbffb889da
test_findscu_encoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
89
diff
changeset
|
2138 tags = DoGet(_REMOTE, '/instances/%s/tags?simplify' % f) |
|
dbcbffb889da
test_findscu_encoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
89
diff
changeset
|
2139 self.assertNotEqual(u'Рентгенография', tags['SeriesDescription']) |
|
dbcbffb889da
test_findscu_encoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
89
diff
changeset
|
2140 |
|
dbcbffb889da
test_findscu_encoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
89
diff
changeset
|
2141 |
| 22 | 2142 def test_encodings(self): |
| 23 | 2143 # Latin-1 (ISO_IR 100) |
| 22 | 2144 brainix = UploadInstance(_REMOTE, 'Brainix/Epi/IM-0001-0001.dcm')['ID'] |
| 2145 tags = DoGet(_REMOTE, '/instances/%s/tags?simplify' % brainix) | |
| 2146 self.assertEqual(u'IRM cérébrale, neuro-crâne', tags['StudyDescription']) | |
| 23 | 2147 |
| 2148 # Latin-2 (ISO_IR 101) | |
| 2149 a = UploadInstance(_REMOTE, 'MarekLatin2.dcm')['ID'] | |
| 2150 i = DoGet(_REMOTE, '/instances/%s/simplified-tags' % a) | |
| 2151 # dcm2xml MarekLatin2.dcm | iconv -f latin2 -t utf-8 | xmllint --format - | |
| 2152 self.assertEqual('Imię i Nazwisko osoby opisującej', | |
| 2153 i['ContentSequence'][4]['ConceptNameCodeSequence'][0]['CodeMeaning'].encode('utf-8')) | |
| 2154 | |
|
26
040f6ef1394a
test_storescu_custom_aet
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
23
diff
changeset
|
2155 |
|
040f6ef1394a
test_storescu_custom_aet
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
23
diff
changeset
|
2156 def test_storescu_custom_aet(self): |
|
040f6ef1394a
test_storescu_custom_aet
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parents:
23
diff
changeset
|
2157 # This tests a feature introduced in Orthanc 0.9.1: "Custom |
|
040f6ef1394a
test_storescu_custom_aet
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
23
diff
changeset
|
2158 # setting of the local AET during C-Store SCU (both in Lua and |
|
040f6ef1394a
test_storescu_custom_aet
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
23
diff
changeset
|
2159 # in the REST API)." |
|
040f6ef1394a
test_storescu_custom_aet
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
23
diff
changeset
|
2160 # https://groups.google.com/forum/#!msg/orthanc-users/o5qMULformU/wZjW2iSaMcAJ |
|
040f6ef1394a
test_storescu_custom_aet
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
23
diff
changeset
|
2161 |
|
040f6ef1394a
test_storescu_custom_aet
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
23
diff
changeset
|
2162 self.assertEqual(0, len(DoGet(_LOCAL, '/patients'))) |
|
040f6ef1394a
test_storescu_custom_aet
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
23
diff
changeset
|
2163 |
|
040f6ef1394a
test_storescu_custom_aet
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
23
diff
changeset
|
2164 a = UploadInstance(_REMOTE, 'Knee/T1/IM-0001-0001.dcm') |
|
040f6ef1394a
test_storescu_custom_aet
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
23
diff
changeset
|
2165 b = UploadInstance(_REMOTE, 'Knee/T1/IM-0001-0002.dcm') |
|
040f6ef1394a
test_storescu_custom_aet
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
23
diff
changeset
|
2166 c = UploadInstance(_REMOTE, 'Knee/T1/IM-0001-0003.dcm') |
|
040f6ef1394a
test_storescu_custom_aet
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
23
diff
changeset
|
2167 |
|
040f6ef1394a
test_storescu_custom_aet
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
23
diff
changeset
|
2168 j = DoPost(_REMOTE, '/modalities/orthanctest/store', { |
|
040f6ef1394a
test_storescu_custom_aet
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
23
diff
changeset
|
2169 'LocalAet' : 'YOP', |
|
040f6ef1394a
test_storescu_custom_aet
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parents:
23
diff
changeset
|
2170 'Resources' : [ a['ID'], b['ID'] ] |
|
040f6ef1394a
test_storescu_custom_aet
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parents:
23
diff
changeset
|
2171 }) |
|
040f6ef1394a
test_storescu_custom_aet
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parents:
23
diff
changeset
|
2172 |
|
040f6ef1394a
test_storescu_custom_aet
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
23
diff
changeset
|
2173 self.assertEqual(2, len(DoGet(_LOCAL, '/instances'))) |
|
040f6ef1394a
test_storescu_custom_aet
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
23
diff
changeset
|
2174 self.assertEqual('YOP', DoGet(_LOCAL, '/instances/%s/metadata/RemoteAET' % a['ID'])) |
|
040f6ef1394a
test_storescu_custom_aet
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
23
diff
changeset
|
2175 |
|
040f6ef1394a
test_storescu_custom_aet
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
23
diff
changeset
|
2176 DropOrthanc(_LOCAL) |
|
040f6ef1394a
test_storescu_custom_aet
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
23
diff
changeset
|
2177 self.assertEqual(0, len(DoGet(_LOCAL, '/instances'))) |
|
040f6ef1394a
test_storescu_custom_aet
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
23
diff
changeset
|
2178 |
|
040f6ef1394a
test_storescu_custom_aet
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
23
diff
changeset
|
2179 j = DoPost(_REMOTE, '/modalities/orthanctest/store', { |
|
040f6ef1394a
test_storescu_custom_aet
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23
diff
changeset
|
2180 'Resources' : [ c['ID'] ] |
|
040f6ef1394a
test_storescu_custom_aet
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23
diff
changeset
|
2181 }) |
|
040f6ef1394a
test_storescu_custom_aet
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parents:
23
diff
changeset
|
2182 |
|
040f6ef1394a
test_storescu_custom_aet
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
23
diff
changeset
|
2183 self.assertEqual(1, len(DoGet(_LOCAL, '/instances'))) |
|
040f6ef1394a
test_storescu_custom_aet
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
23
diff
changeset
|
2184 self.assertEqual('ORTHANC', DoGet(_LOCAL, '/instances/%s/metadata/RemoteAET' % c['ID'])) |
|
040f6ef1394a
test_storescu_custom_aet
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parents:
23
diff
changeset
|
2185 |
|
040f6ef1394a
test_storescu_custom_aet
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parents:
23
diff
changeset
|
2186 DropOrthanc(_REMOTE) |
|
040f6ef1394a
test_storescu_custom_aet
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23
diff
changeset
|
2187 DropOrthanc(_LOCAL) |
|
040f6ef1394a
test_storescu_custom_aet
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23
diff
changeset
|
2188 |
|
040f6ef1394a
test_storescu_custom_aet
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
23
diff
changeset
|
2189 InstallLuaScript('Lua/AutoroutingChangeAet.lua') |
|
040f6ef1394a
test_storescu_custom_aet
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
23
diff
changeset
|
2190 DoPost(_REMOTE, '/tools/execute-script', 'aet = "HELLO"', 'application/lua') |
|
040f6ef1394a
test_storescu_custom_aet
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
23
diff
changeset
|
2191 |
|
040f6ef1394a
test_storescu_custom_aet
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parents:
23
diff
changeset
|
2192 self.assertEqual(0, len(DoGet(_LOCAL, '/instances'))) |
|
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test_storescu_custom_aet
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2193 UploadInstance(_REMOTE, 'Knee/T1/IM-0001-0001.dcm') |
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2194 WaitEmpty(_REMOTE) |
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2195 self.assertEqual(1, len(DoGet(_LOCAL, '/instances'))) |
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2196 self.assertEqual('HELLO', DoGet(_LOCAL, '/instances/%s/metadata/RemoteAET' % a['ID'])) |
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2197 |
|
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|
2198 DoPost(_REMOTE, '/tools/execute-script', 'aet = nill', 'application/lua') |
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2199 UploadInstance(_REMOTE, 'Knee/T1/IM-0001-0002.dcm') |
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2200 WaitEmpty(_REMOTE) |
|
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2201 self.assertEqual(2, len(DoGet(_LOCAL, '/instances'))) |
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2202 self.assertEqual('ORTHANC', DoGet(_LOCAL, '/instances/%s/metadata/RemoteAET' % b['ID'])) |
|
34
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2203 |
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2204 def test_resources_since_limit(self): |
|
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2205 # Upload 16 instances |
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2206 for i in range(4): |
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2207 UploadInstance(_REMOTE, 'Brainix/Flair/IM-0001-000%d.dcm' % (i + 1)) |
|
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2208 UploadInstance(_REMOTE, 'Brainix/Epi/IM-0001-000%d.dcm' % (i + 1)) |
|
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2209 UploadInstance(_REMOTE, 'Knee/T1/IM-0001-000%d.dcm' % (i + 1)) |
|
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2210 UploadInstance(_REMOTE, 'Knee/T2/IM-0001-000%d.dcm' % (i + 1)) |
|
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2211 |
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2212 self.assertEqual(2, len(DoGet(_REMOTE, '/patients'))) |
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2213 self.assertEqual(2, len(DoGet(_REMOTE, '/studies'))) |
|
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2214 self.assertEqual(4, len(DoGet(_REMOTE, '/series'))) |
|
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2215 self.assertEqual(16, len(DoGet(_REMOTE, '/instances'))) |
|
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2216 |
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2217 self.assertRaises(Exception, lambda: DoGet(_REMOTE, '/patients&since=10' % i)) |
|
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2218 self.assertRaises(Exception, lambda: DoGet(_REMOTE, '/patients&limit=10' % i)) |
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2219 |
|
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diff
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2220 self.assertEqual(0, len(DoGet(_REMOTE, '/patients?since=0&limit=0'))) |
|
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|
2221 self.assertEqual(2, len(DoGet(_REMOTE, '/patients?since=0&limit=100'))) |
|
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|
2222 self.assertEqual(2, len(DoGet(_REMOTE, '/studies?since=0&limit=100'))) |
|
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|
2223 self.assertEqual(4, len(DoGet(_REMOTE, '/series?since=0&limit=100'))) |
|
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|
2224 self.assertEqual(16, len(DoGet(_REMOTE, '/instances?since=0&limit=100'))) |
|
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2225 self.assertEqual(1, len(DoGet(_REMOTE, '/patients?since=1&limit=100'))) |
|
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2226 self.assertEqual(0, len(DoGet(_REMOTE, '/patients?since=2&limit=100'))) |
|
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2227 self.assertEqual(0, len(DoGet(_REMOTE, '/patients?since=3&limit=100'))) |
|
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diff
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|
2228 self.assertEqual(1, len(DoGet(_REMOTE, '/studies?since=1&limit=100'))) |
|
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|
2229 self.assertEqual(3, len(DoGet(_REMOTE, '/series?since=1&limit=100'))) |
|
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diff
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2230 self.assertEqual(2, len(DoGet(_REMOTE, '/series?since=2&limit=100'))) |
|
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2231 self.assertEqual(1, len(DoGet(_REMOTE, '/series?since=3&limit=100'))) |
|
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2232 self.assertEqual(0, len(DoGet(_REMOTE, '/series?since=4&limit=100'))) |
|
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2233 self.assertEqual(0, len(DoGet(_REMOTE, '/series?since=100&limit=100'))) |
|
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2234 self.assertEqual(15, len(DoGet(_REMOTE, '/instances?since=1&limit=100'))) |
|
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2235 |
|
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|
2236 for limit in [ 1, 2, 3, 7, 16, 17 ]: |
|
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|
2237 s = {} |
|
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|
2238 since = 0 |
|
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|
2239 while True: |
|
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|
2240 t = DoGet(_REMOTE, '/instances?since=%d&limit=%d' % (since, limit)) |
|
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|
2241 if len(t) == 0: |
|
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|
2242 break |
|
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|
2243 |
|
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|
2244 since += len(t) |
|
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|
2245 for i in t: |
|
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diff
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|
2246 s[i] = None |
|
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diff
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|
2247 |
|
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diff
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|
2248 self.assertEqual(16, len(s)) |
|
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|
2249 for instance in DoGet(_REMOTE, '/instances'): |
|
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|
2250 self.assertTrue(instance in s) |
| 36 | 2251 |
| 2252 | |
| 2253 def test_create_pdf(self): | |
| 2254 # Upload 4 instances | |
| 2255 brainixInstance = UploadInstance(_REMOTE, 'Brainix/Flair/IM-0001-0001.dcm')['ID'] | |
| 2256 UploadInstance(_REMOTE, 'Brainix/Epi/IM-0001-0001.dcm') | |
| 2257 UploadInstance(_REMOTE, 'Knee/T1/IM-0001-0001.dcm') | |
| 2258 UploadInstance(_REMOTE, 'Knee/T2/IM-0001-0001.dcm') | |
| 2259 | |
| 2260 brainixPatient = '16738bc3-e47ed42a-43ce044c-a3414a45-cb069bd0' | |
| 2261 brainixStudy = '27f7126f-4f66fb14-03f4081b-f9341db2-53925988' | |
| 2262 brainixEpi = '2ac1316d-3e432022-62eabff2-c59f5475-9b1ac3f8' | |
| 2263 | |
| 2264 with open(GetDatabasePath('HelloWorld.pdf'), 'rb') as f: | |
| 2265 pdf = f.read() | |
| 2266 | |
| 2267 i = DoPost(_REMOTE, '/tools/create-dicom', | |
| 2268 json.dumps({ | |
| 2269 'Tags' : { | |
| 2270 'PatientName' : 'Jodogne', | |
| 2271 'Modality' : 'CT', | |
| 2272 }, | |
| 2273 'Content' : 'data:application/pdf;base64,' + base64.b64encode(pdf) | |
| 2274 })) | |
| 2275 | |
| 2276 self.assertEqual('Jodogne', DoGet(_REMOTE, '/instances/%s/content/PatientName' % i['ID']).strip()) | |
| 2277 self.assertEqual('OT', DoGet(_REMOTE, '/instances/%s/content/Modality' % i['ID']).strip()) | |
| 2278 | |
| 2279 b = DoGet(_REMOTE, '/instances/%s/content/0042-0011' % i['ID']) | |
| 2280 self.assertEqual(len(b), len(pdf) + 1) | |
| 2281 self.assertEqual(ComputeMD5(b), ComputeMD5(pdf + '\0')) | |
| 2282 | |
| 2283 self.assertRaises(Exception, lambda: DoPost(_REMOTE, '/tools/create-dicom', | |
| 2284 json.dumps({ | |
| 2285 'Parent' : brainixPatient, | |
| 2286 'Tags' : { | |
| 2287 'PatientName' : 'Jodogne', | |
| 2288 } | |
| 2289 }))) | |
| 2290 | |
| 2291 i = DoPost(_REMOTE, '/tools/create-dicom', | |
| 2292 json.dumps({ | |
| 2293 'Parent' : brainixPatient, | |
| 2294 'Tags' : { 'StudyDescription' : 'PDF^Patient' }, | |
| 2295 'Content' : 'data:application/pdf;base64,' + base64.b64encode(pdf) | |
| 2296 })) | |
| 2297 | |
| 2298 self.assertEqual(brainixPatient, DoGet(_REMOTE, '/instances/%s/patient' % i['ID'])['ID']) | |
| 2299 | |
| 2300 i = DoPost(_REMOTE, '/tools/create-dicom', | |
| 2301 json.dumps({ | |
| 2302 'Parent' : brainixStudy, | |
| 2303 'Tags' : { 'SeriesDescription' : 'PDF^Study' }, | |
| 2304 'Content' : 'data:application/pdf;base64,' + base64.b64encode(pdf) | |
| 2305 })) | |
| 2306 | |
| 2307 self.assertEqual(brainixStudy, DoGet(_REMOTE, '/instances/%s/study' % i['ID'])['ID']) | |
| 2308 | |
| 2309 i = DoPost(_REMOTE, '/tools/create-dicom', | |
| 2310 json.dumps({ | |
| 2311 'Parent' : brainixEpi, | |
| 37 | 2312 'Tags' : { 'SpecificCharacterSet' : 'ISO_IR 13' }, |
| 36 | 2313 'Content' : 'data:application/pdf;base64,' + base64.b64encode(pdf) |
| 2314 })) | |
| 2315 | |
| 2316 self.assertEqual(brainixEpi, DoGet(_REMOTE, '/instances/%s/series' % i['ID'])['ID']) | |
| 2317 | |
| 2318 b = DoGet(_REMOTE, '/instances/%s/pdf' % i['ID']) | |
| 2319 self.assertEqual(len(b), len(pdf)) | |
| 2320 self.assertEqual(ComputeMD5(b), ComputeMD5(pdf)) | |
| 2321 | |
| 2322 self.assertRaises(Exception, lambda: DoGet(_REMOTE, '/instances/%s/pdf' % brainixInstance)) | |
| 38 | 2323 |
| 2324 | |
| 2325 def test_create_series(self): | |
| 2326 i = DoPost(_REMOTE, '/tools/create-dicom', | |
| 2327 json.dumps({ | |
| 2328 'Tags' : { | |
| 40 | 2329 'SpecificCharacterSet' : 'ISO_IR 100', |
| 2330 'PatientName' : 'Sébastien Jodogne', | |
| 38 | 2331 'Modality' : 'CT', |
| 2332 }, | |
| 2333 'Content' : [ | |
| 40 | 2334 { |
| 2335 'Content': 'data:image/png;base64,iVBORw0KGgoAAAANSUhEUgAAAAUAAAAFCAYAAACNbyblAAAAHElEQVQI12P4//8/w38GIAXDIBKE0DHxgljNBAAO9TXL0Y4OHwAAAABJRU5ErkJggg==', # red dot in RGBA | |
| 2336 'Tags' : { 'ImageComments' : 'Tutu' } | |
| 2337 }, | |
| 38 | 2338 'data:image/png;base64,iVBORw0KGgoAAAANSUhEUgAAABAAAAAQCAYAAAAf8/9hAAAAoUlEQVQ4jZ2SWw3EIBREjwUsYAELa2EtoAULFUCyXAtroRZqoRbox254BdLC/DZnZjoXWJFgCDg8egW2CBEhEnDzyRk+Ecxz2KP/0AL8S99T+jQccAVs22qKwAuPuq0uyNg9cPLh3am+pe/dkHLZtqJHj6vXJrZ7nvzvxxgemXgUwnGfXqpee09mUwp8m022OYP6bLF7mVuVe0y/umxinsAXRd9z0k1ubWsAAAAASUVORK5CYII=', |
| 2339 ] | |
| 2340 })) | |
| 2341 | |
| 2342 s = DoGet(_REMOTE, i['Path']) | |
| 2343 self.assertEqual('Series', s['Type']) | |
| 2344 self.assertEqual(s['ID'], i['ID']) | |
| 2345 self.assertEqual(2, len(s['Instances'])) | |
| 39 | 2346 self.assertEqual(2, s['ExpectedNumberOfInstances']) |
| 2347 self.assertEqual('Complete', s['Status']) | |
| 40 | 2348 |
| 2349 a = DoGet(_REMOTE, '/instances/%s/tags?simplify' % s['Instances'][0]) | |
| 2350 b = DoGet(_REMOTE, '/instances/%s/tags?simplify' % s['Instances'][1]) | |
| 2351 self.assertTrue('ImageComments' in a or 'ImageComments' in b) | |
| 2352 if 'ImageComments' in a: | |
| 2353 self.assertEqual('Tutu', a['ImageComments']) | |
| 2354 else: | |
| 2355 self.assertEqual('Tutu', b['ImageComments']) | |
| 2356 | |
| 2357 patient = DoGet(_REMOTE, '/instances/%s/patient' % s['Instances'][0]) | |
| 2358 self.assertEqual(patient['MainDicomTags']['PatientName'].encode('utf-8'), | |
| 2359 'Sébastien Jodogne') | |
| 47 | 2360 |
| 2361 | |
| 2362 def test_create_binary(self): | |
| 2363 binary = ''.join(map(chr, range(256))) | |
| 2364 encoded = 'data:application/octet-stream;base64,' + base64.b64encode(binary) | |
| 2365 tags = { | |
| 2366 'PatientName' : 'Jodogne', | |
| 2367 '8899-8899' : encoded | |
| 2368 } | |
| 2369 | |
| 2370 i = DoPost(_REMOTE, '/tools/create-dicom', | |
| 2371 json.dumps({ | |
| 2372 'Tags' : tags | |
| 2373 })) | |
| 2374 | |
| 2375 self.assertEqual('Jodogne', DoGet(_REMOTE, '/instances/%s/content/PatientName' % i['ID']).strip()) | |
| 2376 self.assertEqual(binary, DoGet(_REMOTE, '/instances/%s/content/8899-8899' % i['ID']).strip()) | |
| 2377 | |
| 2378 i = DoPost(_REMOTE, '/tools/create-dicom', | |
| 2379 json.dumps({ | |
| 2380 'InterpretBinaryTags' : False, | |
| 2381 'Tags' : tags | |
| 2382 })) | |
| 2383 | |
| 2384 self.assertEqual('Jodogne', DoGet(_REMOTE, '/instances/%s/content/PatientName' % i['ID']).strip()) | |
| 2385 self.assertEqual(encoded, DoGet(_REMOTE, '/instances/%s/content/8899-8899' % i['ID'])[0:-1]) | |
|
48
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|
2386 |
|
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|
2387 |
|
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|
2388 def test_patient_ids_collision(self): |
|
e4352463ff74
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Sebastien Jodogne <s.jodogne@gmail.com>
parents:
47
diff
changeset
|
2389 # Upload 3 instances from 3 different studies, but with the |
|
e4352463ff74
test_patient_ids_collision
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
47
diff
changeset
|
2390 # same PatientID |
|
e4352463ff74
test_patient_ids_collision
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
47
diff
changeset
|
2391 for i in range(3): |
|
e4352463ff74
test_patient_ids_collision
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
47
diff
changeset
|
2392 UploadInstance(_REMOTE, 'PatientIdsCollision/Image%d.dcm' % (i + 1)) |
|
e4352463ff74
test_patient_ids_collision
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
47
diff
changeset
|
2393 |
|
e4352463ff74
test_patient_ids_collision
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
47
diff
changeset
|
2394 a = DoPost(_REMOTE, '/tools/find', { 'Level' : 'Patient', |
|
e4352463ff74
test_patient_ids_collision
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
47
diff
changeset
|
2395 'Query' : { 'PatientName' : '*' }}) |
|
e4352463ff74
test_patient_ids_collision
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
47
diff
changeset
|
2396 self.assertEqual(1, len(a)) |
|
e4352463ff74
test_patient_ids_collision
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
47
diff
changeset
|
2397 self.assertEqual('COMMON', DoGet(_REMOTE, '/patients/%s' % a[0]) ['MainDicomTags']['PatientID']) |
|
e4352463ff74
test_patient_ids_collision
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
47
diff
changeset
|
2398 |
|
e4352463ff74
test_patient_ids_collision
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
47
diff
changeset
|
2399 a = DoPost(_REMOTE, '/tools/find', { 'Level' : 'Study', |
|
e4352463ff74
test_patient_ids_collision
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
47
diff
changeset
|
2400 'CaseSensitive' : True, |
|
e4352463ff74
test_patient_ids_collision
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
47
diff
changeset
|
2401 'Query' : { 'PatientName' : 'FOO\\HELLO' }}) |
|
e4352463ff74
test_patient_ids_collision
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
47
diff
changeset
|
2402 self.assertEqual(2, len(a)) |
|
e4352463ff74
test_patient_ids_collision
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
47
diff
changeset
|
2403 |
|
e4352463ff74
test_patient_ids_collision
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
47
diff
changeset
|
2404 a = DoPost(_REMOTE, '/tools/find', { 'Level' : 'Series', |
|
e4352463ff74
test_patient_ids_collision
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
47
diff
changeset
|
2405 'CaseSensitive' : False, |
|
e4352463ff74
test_patient_ids_collision
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
47
diff
changeset
|
2406 'Query' : { 'PatientName' : 'Foo' }}) |
|
e4352463ff74
test_patient_ids_collision
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
47
diff
changeset
|
2407 self.assertEqual(1, len(a)) |
|
e4352463ff74
test_patient_ids_collision
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
47
diff
changeset
|
2408 self.assertEqual('FOO^SERIES', DoGet(_REMOTE, '/series/%s/study' % a[0]) ['MainDicomTags']['StudyDescription']) |
|
e4352463ff74
test_patient_ids_collision
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
47
diff
changeset
|
2409 self.assertEqual('FOO', DoGet(_REMOTE, '/series/%s/study' % a[0]) ['PatientMainDicomTags']['PatientName']) |
|
e4352463ff74
test_patient_ids_collision
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
47
diff
changeset
|
2410 self.assertEqual('COMMON', DoGet(_REMOTE, '/series/%s/study' % a[0]) ['PatientMainDicomTags']['PatientID']) |
|
e4352463ff74
test_patient_ids_collision
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
47
diff
changeset
|
2411 |
|
e4352463ff74
test_patient_ids_collision
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
47
diff
changeset
|
2412 a = DoPost(_REMOTE, '/tools/find', { 'Level' : 'Study', |
|
e4352463ff74
test_patient_ids_collision
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
47
diff
changeset
|
2413 'Query' : { 'PatientName' : '*' }}) |
|
e4352463ff74
test_patient_ids_collision
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
47
diff
changeset
|
2414 self.assertEqual(3, len(a)) |
|
e4352463ff74
test_patient_ids_collision
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
47
diff
changeset
|
2415 d = map(lambda x: DoGet(_REMOTE, '/studies/%s' % x) ['MainDicomTags']['StudyDescription'], a) |
|
e4352463ff74
test_patient_ids_collision
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
47
diff
changeset
|
2416 self.assertTrue('FOO^SERIES' in d) |
|
e4352463ff74
test_patient_ids_collision
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
47
diff
changeset
|
2417 self.assertTrue('HELLO^SERIES' in d) |
|
e4352463ff74
test_patient_ids_collision
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
47
diff
changeset
|
2418 self.assertTrue('WORLD^SERIES' in d) |
|
e4352463ff74
test_patient_ids_collision
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
47
diff
changeset
|
2419 |
|
e4352463ff74
test_patient_ids_collision
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
47
diff
changeset
|
2420 d = map(lambda x: DoGet(_REMOTE, '/studies/%s' % x) ['PatientMainDicomTags']['PatientID'], a) |
|
e4352463ff74
test_patient_ids_collision
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
47
diff
changeset
|
2421 self.assertEqual(1, len(set(d))) |
|
e4352463ff74
test_patient_ids_collision
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
47
diff
changeset
|
2422 self.assertEqual('COMMON', d[0]) |
|
e4352463ff74
test_patient_ids_collision
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
47
diff
changeset
|
2423 |
|
e4352463ff74
test_patient_ids_collision
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
47
diff
changeset
|
2424 for i in a: |
|
e4352463ff74
test_patient_ids_collision
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
47
diff
changeset
|
2425 d = DoGet(_REMOTE, '/studies/%s' % i) ['MainDicomTags']['StudyDescription'] |
|
e4352463ff74
test_patient_ids_collision
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
47
diff
changeset
|
2426 p = DoGet(_REMOTE, '/studies/%s' % i) ['PatientMainDicomTags']['PatientName'] |
|
e4352463ff74
test_patient_ids_collision
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
47
diff
changeset
|
2427 self.assertEqual('%s^SERIES' % p, d) |
|
49
e7f9b8199545
test_bitbucket_issue_4
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
48
diff
changeset
|
2428 |
|
e7f9b8199545
test_bitbucket_issue_4
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
48
diff
changeset
|
2429 |
|
e7f9b8199545
test_bitbucket_issue_4
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
48
diff
changeset
|
2430 def test_bitbucket_issue_4(self): |
|
e7f9b8199545
test_bitbucket_issue_4
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
48
diff
changeset
|
2431 UploadInstance(_REMOTE, 'Brainix/Epi/IM-0001-0001.dcm') |
|
e7f9b8199545
test_bitbucket_issue_4
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
48
diff
changeset
|
2432 UploadInstance(_REMOTE, 'Brainix/Epi/IM-0001-0002.dcm') |
|
e7f9b8199545
test_bitbucket_issue_4
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
48
diff
changeset
|
2433 UploadInstance(_REMOTE, 'Brainix/Epi/IM-0001-0003.dcm') |
|
e7f9b8199545
test_bitbucket_issue_4
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
48
diff
changeset
|
2434 UploadInstance(_REMOTE, 'Formats/Jpeg.dcm') |
|
e7f9b8199545
test_bitbucket_issue_4
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
48
diff
changeset
|
2435 UploadInstance(_REMOTE, 'Formats/JpegLossless.dcm') |
|
e7f9b8199545
test_bitbucket_issue_4
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
48
diff
changeset
|
2436 UploadInstance(_REMOTE, 'Formats/Rle.dcm') |
|
e7f9b8199545
test_bitbucket_issue_4
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
48
diff
changeset
|
2437 |
|
e7f9b8199545
test_bitbucket_issue_4
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
48
diff
changeset
|
2438 self.assertEqual(0, len(DoGet(_LOCAL, '/instances'))) |
|
e7f9b8199545
test_bitbucket_issue_4
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
48
diff
changeset
|
2439 self.assertEqual(6, len(DoGet(_REMOTE, '/instances'))) |
|
e7f9b8199545
test_bitbucket_issue_4
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
48
diff
changeset
|
2440 |
|
e7f9b8199545
test_bitbucket_issue_4
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
48
diff
changeset
|
2441 p = DoGet(_REMOTE, '/patients') |
|
e7f9b8199545
test_bitbucket_issue_4
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
48
diff
changeset
|
2442 self.assertEqual(2, len(p)) |
|
e7f9b8199545
test_bitbucket_issue_4
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
48
diff
changeset
|
2443 i1 = map(lambda x: x['ID'], DoGet(_REMOTE, '/patients/%s/instances' % p[0])) |
|
e7f9b8199545
test_bitbucket_issue_4
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
48
diff
changeset
|
2444 i2 = map(lambda x: x['ID'], DoGet(_REMOTE, '/patients/%s/instances' % p[1])) |
|
e7f9b8199545
test_bitbucket_issue_4
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
48
diff
changeset
|
2445 self.assertEqual(3, len(i1)) |
|
e7f9b8199545
test_bitbucket_issue_4
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
48
diff
changeset
|
2446 self.assertEqual(3, len(i2)) |
|
e7f9b8199545
test_bitbucket_issue_4
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
48
diff
changeset
|
2447 |
|
e7f9b8199545
test_bitbucket_issue_4
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
48
diff
changeset
|
2448 j = DoPost(_REMOTE, '/modalities/orthanctest/store', i2[0:1] + i1 + i2[1:3]) |
|
e7f9b8199545
test_bitbucket_issue_4
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
48
diff
changeset
|
2449 |
|
e7f9b8199545
test_bitbucket_issue_4
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
48
diff
changeset
|
2450 self.assertEqual(6, len(DoGet(_LOCAL, '/instances'))) |
|
50
8de63d56cf11
test_create_sequence
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
49
diff
changeset
|
2451 |
|
8de63d56cf11
test_create_sequence
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
49
diff
changeset
|
2452 |
|
8de63d56cf11
test_create_sequence
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
49
diff
changeset
|
2453 def test_create_sequence(self): |
|
8de63d56cf11
test_create_sequence
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
49
diff
changeset
|
2454 i = DoPost(_REMOTE, '/tools/create-dicom', |
|
8de63d56cf11
test_create_sequence
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
49
diff
changeset
|
2455 json.dumps({ |
|
8de63d56cf11
test_create_sequence
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
49
diff
changeset
|
2456 'Tags' : { |
|
8de63d56cf11
test_create_sequence
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
49
diff
changeset
|
2457 'SpecificCharacterSet': 'ISO_IR 100', # Encode using Latin1 |
|
8de63d56cf11
test_create_sequence
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
49
diff
changeset
|
2458 'PatientName': 'Jodogne^', |
|
51
264a20a0276d
test_modify_sequence
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
50
diff
changeset
|
2459 'ReferencedStudySequence': GenerateTestSequence(), |
|
50
8de63d56cf11
test_create_sequence
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
49
diff
changeset
|
2460 } |
|
8de63d56cf11
test_create_sequence
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
49
diff
changeset
|
2461 }))['ID'] |
|
8de63d56cf11
test_create_sequence
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
49
diff
changeset
|
2462 |
|
8de63d56cf11
test_create_sequence
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
49
diff
changeset
|
2463 self.assertEqual('Jodogne^', DoGet(_REMOTE, '/instances/%s/content/PatientName' % i)) |
|
8de63d56cf11
test_create_sequence
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
49
diff
changeset
|
2464 self.assertEqual('Hello^', DoGet(_REMOTE, '/instances/%s/content/ReferencedStudySequence/0/StudyDescription' % i)) |
|
8de63d56cf11
test_create_sequence
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
49
diff
changeset
|
2465 self.assertEqual('Toto', DoGet(_REMOTE, '/instances/%s/content/ReferencedStudySequence/0/ReferencedStudySequence/0/StudyDescription' % i)) |
|
8de63d56cf11
test_create_sequence
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
49
diff
changeset
|
2466 self.assertEqual('Tata', DoGet(_REMOTE, '/instances/%s/content/ReferencedStudySequence/0/ReferencedStudySequence/1/StudyDescription' % i)) |
|
8de63d56cf11
test_create_sequence
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
49
diff
changeset
|
2467 self.assertEqual(u'Sébastien^'.encode('latin-1'), |
|
8de63d56cf11
test_create_sequence
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
49
diff
changeset
|
2468 DoGet(_REMOTE, '/instances/%s/content/ReferencedStudySequence/1/StudyDescription' % i)) |
|
51
264a20a0276d
test_modify_sequence
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
50
diff
changeset
|
2469 |
|
264a20a0276d
test_modify_sequence
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
50
diff
changeset
|
2470 |
|
264a20a0276d
test_modify_sequence
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
50
diff
changeset
|
2471 def test_modify_sequence(self): |
|
264a20a0276d
test_modify_sequence
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
50
diff
changeset
|
2472 i = UploadInstance(_REMOTE, 'PrivateTags.dcm')['ID'] |
|
264a20a0276d
test_modify_sequence
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
50
diff
changeset
|
2473 self.assertRaises(Exception, lambda: DoGet(_REMOTE, '/instances/%s/content/ReferencedStudySequence' % i)) |
|
264a20a0276d
test_modify_sequence
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
50
diff
changeset
|
2474 |
|
264a20a0276d
test_modify_sequence
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
50
diff
changeset
|
2475 j = DoPost(_REMOTE, '/instances/%s/modify' % i, |
|
264a20a0276d
test_modify_sequence
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
50
diff
changeset
|
2476 json.dumps({ |
|
264a20a0276d
test_modify_sequence
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
50
diff
changeset
|
2477 "Replace" : { |
|
264a20a0276d
test_modify_sequence
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
50
diff
changeset
|
2478 "PatientName" : "hello", |
|
264a20a0276d
test_modify_sequence
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
50
diff
changeset
|
2479 'ReferencedStudySequence': GenerateTestSequence(), |
|
264a20a0276d
test_modify_sequence
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
50
diff
changeset
|
2480 }, |
|
264a20a0276d
test_modify_sequence
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
50
diff
changeset
|
2481 }), |
|
264a20a0276d
test_modify_sequence
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
50
diff
changeset
|
2482 'application/json') |
|
264a20a0276d
test_modify_sequence
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
50
diff
changeset
|
2483 j = DoPost(_REMOTE, '/instances', j, 'application/dicom')['ID'] |
|
264a20a0276d
test_modify_sequence
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
50
diff
changeset
|
2484 DoDelete(_REMOTE, '/instances/%s' % i) |
|
264a20a0276d
test_modify_sequence
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
50
diff
changeset
|
2485 |
| 52 | 2486 self.assertEqual(2, len(DoGet(_REMOTE, '/instances/%s/content/ReferencedStudySequence' % j))) |
| 2487 | |
| 2488 | |
| 2489 def test_compression(self): | |
| 2490 i = UploadInstance(_REMOTE, 'DummyCT.dcm')['ID'] | |
| 2491 | |
| 2492 data = DoGetRaw(_REMOTE, '/instances/%s/attachments/dicom-as-json/data' % i)[1] | |
| 2493 | |
| 2494 # "StorageCompression" is enabled in the Orthanc to be tested, | |
| 2495 # uncompress the data before running the test | |
| 2496 if DoGet(_REMOTE, '/instances/%s/attachments/dicom-as-json/is-compressed' % i) != 0: | |
| 2497 DoPost(_REMOTE, '/instances/%s/attachments/dicom-as-json/uncompress' % i) | |
| 2498 | |
| 2499 cs = DoGet(_REMOTE, '/statistics')['TotalDiskSize'] | |
| 2500 us = DoGet(_REMOTE, '/statistics')['TotalUncompressedSize'] | |
| 2501 size = DoGet(_REMOTE, '/instances/%s/attachments/dicom-as-json/size' % i) | |
| 2502 md5 = DoGet(_REMOTE, '/instances/%s/attachments/dicom-as-json/md5' % i) | |
| 2503 self.assertEqual(data, DoGetRaw(_REMOTE, '/instances/%s/attachments/dicom-as-json/compressed-data' % i)[1]) | |
| 2504 self.assertEqual(md5, DoGet(_REMOTE, '/instances/%s/attachments/dicom-as-json/compressed-md5' % i)) | |
| 2505 self.assertEqual(size, DoGet(_REMOTE, '/instances/%s/attachments/dicom-as-json/compressed-size' % i)) | |
| 2506 | |
| 2507 ops = DoGet(_REMOTE, '/instances/%s/attachments/dicom-as-json' % i) | |
| 2508 self.assertTrue('compress' in ops) | |
| 2509 self.assertTrue('uncompress' in ops) | |
| 2510 self.assertTrue('is-compressed' in ops) | |
| 2511 self.assertEqual(0, DoGet(_REMOTE, '/instances/%s/attachments/dicom-as-json/is-compressed' % i)) | |
| 2512 DoPost(_REMOTE, '/instances/%s/attachments/dicom-as-json/verify-md5' % i) | |
| 2513 | |
| 2514 DoPost(_REMOTE, '/instances/%s/attachments/dicom-as-json/compress' % i) | |
| 2515 DoPost(_REMOTE, '/instances/%s/attachments/dicom-as-json/verify-md5' % i) | |
| 2516 self.assertEqual(1, DoGet(_REMOTE, '/instances/%s/attachments/dicom-as-json/is-compressed' % i)) | |
| 2517 self.assertLess(cs, DoGet(_REMOTE, '/statistics')['TotalDiskSize']) | |
| 2518 self.assertEqual(us, DoGet(_REMOTE, '/statistics')['TotalUncompressedSize']) | |
| 2519 self.assertGreater(len(data), len(DoGetRaw(_REMOTE, '/instances/%s/attachments/dicom-as-json/compressed-data' % i)[1])) | |
| 2520 self.assertGreater(size, DoGet(_REMOTE, '/instances/%s/attachments/dicom-as-json/compressed-size' % i)) | |
| 2521 self.assertEqual(size, DoGet(_REMOTE, '/instances/%s/attachments/dicom-as-json/size' % i)) | |
| 2522 self.assertEqual(md5, DoGet(_REMOTE, '/instances/%s/attachments/dicom-as-json/md5' % i)) | |
| 2523 self.assertNotEqual(md5, DoGet(_REMOTE, '/instances/%s/attachments/dicom-as-json/compressed-md5' % i)) | |
| 2524 | |
| 2525 DoPost(_REMOTE, '/instances/%s/attachments/dicom-as-json/uncompress' % i) | |
| 2526 DoPost(_REMOTE, '/instances/%s/attachments/dicom-as-json/verify-md5' % i) | |
| 2527 self.assertEqual(0, DoGet(_REMOTE, '/instances/%s/attachments/dicom-as-json/is-compressed' % i)) | |
| 2528 self.assertEqual(data, DoGetRaw(_REMOTE, '/instances/%s/attachments/dicom-as-json/compressed-data' % i)[1]) | |
| 2529 self.assertEqual(size, DoGet(_REMOTE, '/instances/%s/attachments/dicom-as-json/compressed-size' % i)) | |
| 2530 self.assertEqual(size, DoGet(_REMOTE, '/instances/%s/attachments/dicom-as-json/size' % i)) | |
| 2531 self.assertEqual(md5, DoGet(_REMOTE, '/instances/%s/attachments/dicom-as-json/md5' % i)) | |
| 2532 self.assertEqual(md5, DoGet(_REMOTE, '/instances/%s/attachments/dicom-as-json/compressed-md5' % i)) | |
| 2533 self.assertEqual(cs, DoGet(_REMOTE, '/statistics')['TotalDiskSize']) | |
| 2534 self.assertEqual(us, DoGet(_REMOTE, '/statistics')['TotalUncompressedSize']) | |
| 53 | 2535 |
| 2536 | |
| 2537 def test_ordered_slices(self): | |
| 2538 i = UploadInstance(_REMOTE, 'Multiframe.dcm')['ID'] | |
| 2539 s = DoGet(_REMOTE, '/instances/%s' % i)['ParentSeries'] | |
| 2540 o = DoGet(_REMOTE, '/series/%s/ordered-slices' % s) | |
| 2541 self.assertEqual('Sequence', o['Type']) | |
| 2542 self.assertEqual(1, len(o['Dicom'])) | |
| 2543 self.assertEqual('/instances/9e05eb0a-18b6268c-e0d36085-8ddab517-3b5aec02/file', o['Dicom'][0]) | |
| 2544 self.assertEqual(76, len(o['Slices'])) | |
| 2545 for j in range(76): | |
| 2546 self.assertEqual('/instances/9e05eb0a-18b6268c-e0d36085-8ddab517-3b5aec02/frames/%d' % j, o['Slices'][j]) | |
| 2547 | |
| 68 | 2548 self.assertEqual(1, len(o['SlicesShort'])) |
| 2549 self.assertEqual('9e05eb0a-18b6268c-e0d36085-8ddab517-3b5aec02', o['SlicesShort'][0][0]) | |
| 2550 self.assertEqual(0, o['SlicesShort'][0][1]) | |
| 2551 self.assertEqual(76, o['SlicesShort'][0][2]) | |
| 2552 | |
| 53 | 2553 i = UploadInstance(_REMOTE, 'Brainix/Epi/IM-0001-0001.dcm')['ID'] |
| 2554 j = UploadInstance(_REMOTE, 'Brainix/Epi/IM-0001-0002.dcm')['ID'] | |
| 2555 k = UploadInstance(_REMOTE, 'Brainix/Epi/IM-0001-0003.dcm')['ID'] | |
| 2556 s = DoGet(_REMOTE, '/instances/%s' % i)['ParentSeries'] | |
| 2557 o = DoGet(_REMOTE, '/series/%s/ordered-slices' % s) | |
| 2558 | |
| 2559 self.assertEqual('Volume', o['Type']) | |
| 2560 self.assertEqual(3, len(o['Dicom'])) | |
| 2561 self.assertEqual(3, len(o['Slices'])) | |
| 2562 self.assertEqual('/instances/%s/file' % i, o['Dicom'][2]) | |
| 2563 self.assertEqual('/instances/%s/file' % j, o['Dicom'][1]) | |
| 2564 self.assertEqual('/instances/%s/file' % k, o['Dicom'][0]) | |
| 2565 self.assertEqual('/instances/%s/frames/0' % i, o['Slices'][2]) | |
| 2566 self.assertEqual('/instances/%s/frames/0' % j, o['Slices'][1]) | |
| 2567 self.assertEqual('/instances/%s/frames/0' % k, o['Slices'][0]) | |
| 2568 | |
| 68 | 2569 self.assertEqual(3, len(o['SlicesShort'])) |
| 2570 self.assertEqual(k, o['SlicesShort'][0][0]) | |
| 2571 self.assertEqual(0, o['SlicesShort'][0][1]) | |
| 2572 self.assertEqual(1, o['SlicesShort'][0][2]) | |
| 2573 self.assertEqual(j, o['SlicesShort'][1][0]) | |
| 2574 self.assertEqual(0, o['SlicesShort'][1][1]) | |
| 2575 self.assertEqual(1, o['SlicesShort'][1][2]) | |
| 2576 self.assertEqual(i, o['SlicesShort'][2][0]) | |
| 2577 self.assertEqual(0, o['SlicesShort'][2][1]) | |
| 2578 self.assertEqual(1, o['SlicesShort'][2][2]) | |
| 2579 | |
| 53 | 2580 i = UploadInstance(_REMOTE, 'Beaufix/IM-0001-0001.dcm')['ID'] |
| 2581 j = UploadInstance(_REMOTE, 'Beaufix/IM-0001-0002.dcm')['ID'] | |
| 2582 s = DoGet(_REMOTE, '/instances/%s' % i)['ParentSeries'] | |
| 2583 o = DoGet(_REMOTE, '/series/%s/ordered-slices' % s) | |
| 2584 | |
| 2585 self.assertEqual('Sequence', o['Type']) | |
| 2586 self.assertEqual(2, len(o['Dicom'])) | |
| 2587 self.assertEqual(2, len(o['Slices'])) | |
| 2588 self.assertEqual('/instances/%s/file' % i, o['Dicom'][0]) | |
| 2589 self.assertEqual('/instances/%s/file' % j, o['Dicom'][1]) | |
| 2590 self.assertEqual('/instances/%s/frames/0' % i, o['Slices'][0]) | |
| 2591 self.assertEqual('/instances/%s/frames/0' % j, o['Slices'][1]) | |
|
54
c5f8a6b0d85e
test_incoming_movescu_accession
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
53
diff
changeset
|
2592 |
| 68 | 2593 self.assertEqual(2, len(o['SlicesShort'])) |
| 2594 self.assertEqual(i, o['SlicesShort'][0][0]) | |
| 2595 self.assertEqual(0, o['SlicesShort'][0][1]) | |
| 2596 self.assertEqual(1, o['SlicesShort'][0][2]) | |
| 2597 self.assertEqual(j, o['SlicesShort'][1][0]) | |
| 2598 self.assertEqual(0, o['SlicesShort'][1][1]) | |
| 2599 self.assertEqual(1, o['SlicesShort'][1][2]) | |
| 2600 | |
| 2601 | |
|
54
c5f8a6b0d85e
test_incoming_movescu_accession
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
53
diff
changeset
|
2602 |
|
c5f8a6b0d85e
test_incoming_movescu_accession
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
53
diff
changeset
|
2603 def test_incoming_movescu_accession(self): |
|
c5f8a6b0d85e
test_incoming_movescu_accession
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
53
diff
changeset
|
2604 UploadInstance(_REMOTE, 'Knee/T1/IM-0001-0001.dcm') |
|
c5f8a6b0d85e
test_incoming_movescu_accession
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
53
diff
changeset
|
2605 |
|
c5f8a6b0d85e
test_incoming_movescu_accession
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
53
diff
changeset
|
2606 self.assertEqual(0, len(DoGet(_LOCAL, '/patients'))) |
|
c5f8a6b0d85e
test_incoming_movescu_accession
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
53
diff
changeset
|
2607 CallMoveScu([ '--study', '-k', '0008,0052=STUDY', '-k', 'AccessionNumber=nope' ]) |
|
c5f8a6b0d85e
test_incoming_movescu_accession
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
53
diff
changeset
|
2608 self.assertEqual(0, len(DoGet(_LOCAL, '/patients'))) |
|
c5f8a6b0d85e
test_incoming_movescu_accession
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
53
diff
changeset
|
2609 CallMoveScu([ '--study', '-k', '0008,0052=PATIENT', '-k', 'AccessionNumber=A10003245599' ]) |
|
c5f8a6b0d85e
test_incoming_movescu_accession
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
53
diff
changeset
|
2610 self.assertEqual(0, len(DoGet(_LOCAL, '/patients'))) |
|
c5f8a6b0d85e
test_incoming_movescu_accession
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
53
diff
changeset
|
2611 CallMoveScu([ '--study', '-k', '0008,0052=STUDY', '-k', 'AccessionNumber=A10003245599' ]) |
|
c5f8a6b0d85e
test_incoming_movescu_accession
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
53
diff
changeset
|
2612 self.assertEqual(1, len(DoGet(_LOCAL, '/patients'))) |
|
c5f8a6b0d85e
test_incoming_movescu_accession
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
53
diff
changeset
|
2613 |
| 55 | 2614 |
| 2615 def test_dicom_to_json(self): | |
| 2616 i = UploadInstance(_REMOTE, 'PrivateMDNTags.dcm')['ID'] | |
|
60
cd3c7f70f139
test backward compatibility with Orthanc 0.9.4
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
59
diff
changeset
|
2617 j = UploadInstance(_REMOTE, 'PrivateTags.dcm')['ID'] |
|
cd3c7f70f139
test backward compatibility with Orthanc 0.9.4
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
59
diff
changeset
|
2618 |
|
cd3c7f70f139
test backward compatibility with Orthanc 0.9.4
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
59
diff
changeset
|
2619 t = DoGet(_REMOTE, '/instances/%s/tags?simplify' % i) |
|
cd3c7f70f139
test backward compatibility with Orthanc 0.9.4
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
59
diff
changeset
|
2620 with open(GetDatabasePath('PrivateMDNTagsSimplify.json'), 'r') as f: |
|
80
8466dbfcb22b
fix test against dcmtk 3.6.1
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
79
diff
changeset
|
2621 self.assertTrue(CompareTags(t, json.loads(f.read()), [ |
| 123 | 2622 # Tags for compatibility with DCMTK 3.6.0 |
| 2623 'RETIRED_OtherPatientIDs', | |
| 2624 'OtherPatientIDs', | |
| 2625 'ACR_NEMA_2C_VariablePixelDataGroupLength', | |
|
80
8466dbfcb22b
fix test against dcmtk 3.6.1
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
79
diff
changeset
|
2626 ])) |
| 55 | 2627 |
| 2628 t = DoGet(_REMOTE, '/instances/%s/tags' % i) | |
| 2629 with open(GetDatabasePath('PrivateMDNTagsFull.json'), 'r') as f: | |
|
87
4b24faec842b
test_reconstruct_json2 + test_private_tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
86
diff
changeset
|
2630 self.assertTrue(CompareTags(t, json.loads(f.read()), [ |
|
4b24faec842b
test_reconstruct_json2 + test_private_tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
86
diff
changeset
|
2631 ])) |
| 55 | 2632 |
|
60
cd3c7f70f139
test backward compatibility with Orthanc 0.9.4
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
59
diff
changeset
|
2633 t = DoGet(_REMOTE, '/instances/%s/tags?simplify' % j) |
|
cd3c7f70f139
test backward compatibility with Orthanc 0.9.4
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
59
diff
changeset
|
2634 with open(GetDatabasePath('PrivateTagsSimplify.json'), 'r') as f: |
|
80
8466dbfcb22b
fix test against dcmtk 3.6.1
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
79
diff
changeset
|
2635 self.assertTrue(CompareTags(t, json.loads(f.read()), [ |
|
8466dbfcb22b
fix test against dcmtk 3.6.1
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
79
diff
changeset
|
2636 ])) |
|
60
cd3c7f70f139
test backward compatibility with Orthanc 0.9.4
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
59
diff
changeset
|
2637 |
|
cd3c7f70f139
test backward compatibility with Orthanc 0.9.4
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
59
diff
changeset
|
2638 t = DoGet(_REMOTE, '/instances/%s/tags' % j) |
|
cd3c7f70f139
test backward compatibility with Orthanc 0.9.4
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
59
diff
changeset
|
2639 with open(GetDatabasePath('PrivateTagsFull.json'), 'r') as f: |
|
cd3c7f70f139
test backward compatibility with Orthanc 0.9.4
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
59
diff
changeset
|
2640 a = json.loads(f.read()) |
|
65
09fc27e0899a
patch for testing windows builds
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
64
diff
changeset
|
2641 aa = json.dumps(a).replace('2e+022', '2e+22') |
|
09fc27e0899a
patch for testing windows builds
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
64
diff
changeset
|
2642 tt = json.dumps(t).replace('2e+022', '2e+22') |
|
09fc27e0899a
patch for testing windows builds
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
64
diff
changeset
|
2643 self.assertEqual(aa, tt) |
| 57 | 2644 |
| 2645 | |
| 2646 def test_batch_archive(self): | |
| 2647 UploadInstance(_REMOTE, 'Knee/T1/IM-0001-0001.dcm') | |
| 2648 UploadInstance(_REMOTE, 'Knee/T1/IM-0001-0002.dcm') | |
| 2649 UploadInstance(_REMOTE, 'Knee/T2/IM-0001-0001.dcm') | |
| 2650 UploadInstance(_REMOTE, 'Knee/T2/IM-0001-0002.dcm') | |
| 2651 UploadInstance(_REMOTE, 'Brainix/Epi/IM-0001-0001.dcm') | |
| 2652 UploadInstance(_REMOTE, 'Brainix/Epi/IM-0001-0002.dcm') | |
| 2653 UploadInstance(_REMOTE, 'Brainix/Flair/IM-0001-0001.dcm') | |
| 2654 UploadInstance(_REMOTE, 'Brainix/Flair/IM-0001-0002.dcm') | |
| 2655 | |
| 2656 s = DoPost(_REMOTE, '/tools/create-archive', [ ]) | |
| 2657 z = zipfile.ZipFile(StringIO(s), "r") | |
| 2658 self.assertEqual(0, len(z.namelist())) | |
| 2659 | |
| 2660 # One patient | |
| 2661 s = DoPost(_REMOTE, '/tools/create-archive', [ 'ca29faea-b6a0e17f-067743a1-8b778011-a48b2a17' ]) | |
| 2662 z = zipfile.ZipFile(StringIO(s), "r") | |
| 2663 self.assertEqual(4, len(z.namelist())) | |
| 2664 | |
| 2665 # One patient + twice its study + one series from other patient | |
| 2666 s = DoPost(_REMOTE, '/tools/create-archive', [ | |
| 2667 'ca29faea-b6a0e17f-067743a1-8b778011-a48b2a17', | |
| 2668 '0a9b3153-2512774b-2d9580de-1fc3dcf6-3bd83918', | |
| 2669 '1e2c125c-411b8e86-3f4fe68e-a7584dd3-c6da78f0' | |
| 2670 ]) | |
| 2671 z = zipfile.ZipFile(StringIO(s), "r") | |
| 2672 self.assertEqual(6, len(z.namelist())) | |
| 2673 | |
| 2674 # One patient + one series + one instance | |
| 2675 s = DoPost(_REMOTE, '/tools/create-archive', [ | |
| 2676 'ca29faea-b6a0e17f-067743a1-8b778011-a48b2a17', | |
| 2677 '1e2c125c-411b8e86-3f4fe68e-a7584dd3-c6da78f0', | |
| 2678 '1d429ccb-bdcc78a1-7d129d6a-ba4966ed-fe4dbd87' | |
| 2679 ]) | |
| 2680 z = zipfile.ZipFile(StringIO(s), "r") | |
| 2681 self.assertEqual(7, len(z.namelist())) | |
|
59
84378ada15ab
test_decode_brainix_as_jpeg
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
58
diff
changeset
|
2682 |
|
84378ada15ab
test_decode_brainix_as_jpeg
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
58
diff
changeset
|
2683 |
|
84378ada15ab
test_decode_brainix_as_jpeg
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
58
diff
changeset
|
2684 def test_decode_brainix_as_jpeg(self): |
|
84378ada15ab
test_decode_brainix_as_jpeg
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
58
diff
changeset
|
2685 i = UploadInstance(_REMOTE, 'Brainix/Epi/IM-0001-0001.dcm')['ID'] |
|
84378ada15ab
test_decode_brainix_as_jpeg
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parents:
58
diff
changeset
|
2686 |
|
84378ada15ab
test_decode_brainix_as_jpeg
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
58
diff
changeset
|
2687 j = GetImage(_REMOTE, '/instances/%s/preview' % i) |
|
84378ada15ab
test_decode_brainix_as_jpeg
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parents:
58
diff
changeset
|
2688 self.assertEqual('PNG', j.format) |
|
84378ada15ab
test_decode_brainix_as_jpeg
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parents:
58
diff
changeset
|
2689 self.assertEqual(j.size[0], 256) |
|
84378ada15ab
test_decode_brainix_as_jpeg
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parents:
58
diff
changeset
|
2690 self.assertEqual(j.size[1], 256) |
|
84378ada15ab
test_decode_brainix_as_jpeg
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
58
diff
changeset
|
2691 |
|
84378ada15ab
test_decode_brainix_as_jpeg
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parents:
58
diff
changeset
|
2692 j = GetImage(_REMOTE, '/instances/%s/preview' % i, headers = { 'Accept' : '*/*' }) |
|
84378ada15ab
test_decode_brainix_as_jpeg
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
58
diff
changeset
|
2693 self.assertEqual('PNG', j.format) |
|
84378ada15ab
test_decode_brainix_as_jpeg
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
58
diff
changeset
|
2694 |
|
84378ada15ab
test_decode_brainix_as_jpeg
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
58
diff
changeset
|
2695 j = GetImage(_REMOTE, '/instances/%s/preview' % i, headers = { 'Accept' : 'image/*' }) |
|
84378ada15ab
test_decode_brainix_as_jpeg
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
58
diff
changeset
|
2696 self.assertEqual('PNG', j.format) |
|
84378ada15ab
test_decode_brainix_as_jpeg
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
58
diff
changeset
|
2697 |
|
84378ada15ab
test_decode_brainix_as_jpeg
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
58
diff
changeset
|
2698 j = GetImage(_REMOTE, '/instances/%s/preview' % i, headers = { 'Accept' : 'image/png' }) |
|
84378ada15ab
test_decode_brainix_as_jpeg
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
58
diff
changeset
|
2699 self.assertEqual('PNG', j.format) |
|
84378ada15ab
test_decode_brainix_as_jpeg
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
58
diff
changeset
|
2700 |
|
84378ada15ab
test_decode_brainix_as_jpeg
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parents:
58
diff
changeset
|
2701 j = GetImage(_REMOTE, '/instances/%s/preview' % i, headers = { 'Accept' : 'image/jpeg' }) |
|
84378ada15ab
test_decode_brainix_as_jpeg
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
58
diff
changeset
|
2702 self.assertEqual('JPEG', j.format) |
|
84378ada15ab
test_decode_brainix_as_jpeg
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
58
diff
changeset
|
2703 self.assertEqual(j.size[0], 256) |
|
84378ada15ab
test_decode_brainix_as_jpeg
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
58
diff
changeset
|
2704 self.assertEqual(j.size[1], 256) |
|
84378ada15ab
test_decode_brainix_as_jpeg
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
58
diff
changeset
|
2705 |
|
84378ada15ab
test_decode_brainix_as_jpeg
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
58
diff
changeset
|
2706 a = len(DoGet(_REMOTE, '/instances/%s/preview?quality=50' % i, headers = { 'Accept' : 'image/jpeg' })) |
|
84378ada15ab
test_decode_brainix_as_jpeg
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
58
diff
changeset
|
2707 b = len(DoGet(_REMOTE, '/instances/%s/preview' % i, headers = { 'Accept' : 'image/jpeg' })) |
|
84378ada15ab
test_decode_brainix_as_jpeg
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
58
diff
changeset
|
2708 self.assertLess(a, b) |
|
84378ada15ab
test_decode_brainix_as_jpeg
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
58
diff
changeset
|
2709 |
|
84378ada15ab
test_decode_brainix_as_jpeg
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
58
diff
changeset
|
2710 j = GetImage(_REMOTE, '/instances/%s/image-uint8' % i, headers = { 'Accept' : 'image/jpeg' }) |
|
84378ada15ab
test_decode_brainix_as_jpeg
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
58
diff
changeset
|
2711 self.assertEqual('JPEG', j.format) |
|
84378ada15ab
test_decode_brainix_as_jpeg
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
58
diff
changeset
|
2712 |
|
84378ada15ab
test_decode_brainix_as_jpeg
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
58
diff
changeset
|
2713 # 16bit encoding is not supported with JPEG |
|
84378ada15ab
test_decode_brainix_as_jpeg
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
58
diff
changeset
|
2714 self.assertRaises(Exception, lambda: GetImage(_REMOTE, '/instances/%s/image-uint16' % i, headers = { 'Accept' : 'image/jpeg' })) |
|
84378ada15ab
test_decode_brainix_as_jpeg
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
58
diff
changeset
|
2715 self.assertRaises(Exception, lambda: GetImage(_REMOTE, '/instances/%s/image-int16' % i, headers = { 'Accept' : 'image/jpeg' })) |
|
84378ada15ab
test_decode_brainix_as_jpeg
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
58
diff
changeset
|
2716 |
|
84378ada15ab
test_decode_brainix_as_jpeg
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
58
diff
changeset
|
2717 # No matching content type |
|
84378ada15ab
test_decode_brainix_as_jpeg
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
58
diff
changeset
|
2718 self.assertRaises(Exception, lambda: GetImage(_REMOTE, '/instances/%s/preview' % i, headers = { 'Accept' : 'application/pdf' })) |
|
69
83fd88230097
test_media_encodings
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
68
diff
changeset
|
2719 |
|
83fd88230097
test_media_encodings
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
68
diff
changeset
|
2720 |
|
83fd88230097
test_media_encodings
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
68
diff
changeset
|
2721 |
|
83fd88230097
test_media_encodings
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
68
diff
changeset
|
2722 def test_media_encodings(self): |
|
83fd88230097
test_media_encodings
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
68
diff
changeset
|
2723 ascii = UploadInstance(_REMOTE, 'Knee/T1/IM-0001-0001.dcm')['ID'] |
|
83fd88230097
test_media_encodings
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
68
diff
changeset
|
2724 latin1 = UploadInstance(_REMOTE, 'Brainix/Epi/IM-0001-0001.dcm')['ID'] |
|
83fd88230097
test_media_encodings
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
68
diff
changeset
|
2725 latin2 = UploadInstance(_REMOTE, 'MarekLatin2.dcm')['ID'] |
|
83fd88230097
test_media_encodings
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
68
diff
changeset
|
2726 |
|
83fd88230097
test_media_encodings
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
68
diff
changeset
|
2727 tmp = DoPost(_REMOTE, '/tools/create-media', [ascii,latin1,latin2]) |
|
83fd88230097
test_media_encodings
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
68
diff
changeset
|
2728 z = zipfile.ZipFile(StringIO(tmp), "r") |
|
83fd88230097
test_media_encodings
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
68
diff
changeset
|
2729 |
|
83fd88230097
test_media_encodings
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
68
diff
changeset
|
2730 self.assertEqual(4, len(z.namelist())) |
|
83fd88230097
test_media_encodings
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
68
diff
changeset
|
2731 self.assertTrue('IMAGES/IM0' in z.namelist()) |
|
83fd88230097
test_media_encodings
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
68
diff
changeset
|
2732 self.assertTrue('IMAGES/IM1' in z.namelist()) |
|
83fd88230097
test_media_encodings
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
68
diff
changeset
|
2733 self.assertTrue('IMAGES/IM2' in z.namelist()) |
|
83fd88230097
test_media_encodings
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
68
diff
changeset
|
2734 self.assertTrue('DICOMDIR' in z.namelist()) |
|
83fd88230097
test_media_encodings
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
68
diff
changeset
|
2735 |
|
83fd88230097
test_media_encodings
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
68
diff
changeset
|
2736 try: |
|
83fd88230097
test_media_encodings
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
68
diff
changeset
|
2737 os.remove('/tmp/DICOMDIR') |
|
83fd88230097
test_media_encodings
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
68
diff
changeset
|
2738 except: |
|
83fd88230097
test_media_encodings
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
68
diff
changeset
|
2739 # The file does not exist |
|
83fd88230097
test_media_encodings
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
68
diff
changeset
|
2740 pass |
|
83fd88230097
test_media_encodings
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
68
diff
changeset
|
2741 |
|
83fd88230097
test_media_encodings
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
68
diff
changeset
|
2742 z.extract('DICOMDIR', '/tmp') |
|
83fd88230097
test_media_encodings
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
68
diff
changeset
|
2743 a = subprocess.check_output([ FindExecutable('dciodvfy'), '/tmp/DICOMDIR' ], |
|
83fd88230097
test_media_encodings
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
68
diff
changeset
|
2744 stderr = subprocess.STDOUT).split('\n') |
|
83fd88230097
test_media_encodings
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
68
diff
changeset
|
2745 |
|
83fd88230097
test_media_encodings
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
68
diff
changeset
|
2746 a = subprocess.check_output([ FindExecutable('dcentvfy'), '/tmp/DICOMDIR' ], |
|
83fd88230097
test_media_encodings
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
68
diff
changeset
|
2747 stderr = subprocess.STDOUT).split('\n') |
|
83fd88230097
test_media_encodings
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
68
diff
changeset
|
2748 self.assertEqual(1, len(a)) |
|
83fd88230097
test_media_encodings
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
68
diff
changeset
|
2749 self.assertEqual('', a[0]) |
|
83fd88230097
test_media_encodings
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
68
diff
changeset
|
2750 |
|
83fd88230097
test_media_encodings
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
68
diff
changeset
|
2751 a = subprocess.check_output([ FindExecutable('dcm2xml'), '/tmp/DICOMDIR' ]) |
|
83fd88230097
test_media_encodings
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
68
diff
changeset
|
2752 self.assertTrue(re.search('1.3.46.670589.11.17521.5.0.3124.2008081908590448738', a) != None) |
|
83fd88230097
test_media_encodings
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
68
diff
changeset
|
2753 self.assertTrue(re.search('1.3.46.670589.11.0.0.11.4.2.0.8743.5.5396.2006120114333648576', a) != None) |
|
83fd88230097
test_media_encodings
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
68
diff
changeset
|
2754 self.assertTrue(re.search('1.2.826.0.1.3680043.2.1569.1.4.323026757.1700.1399452091.57', a) != None) |
|
83fd88230097
test_media_encodings
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
68
diff
changeset
|
2755 |
|
83fd88230097
test_media_encodings
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
68
diff
changeset
|
2756 os.remove('/tmp/DICOMDIR') |
|
71
48740070cbf1
TDD: tests for ongoing development of counter tags in C-Find
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
70
diff
changeset
|
2757 |
|
48740070cbf1
TDD: tests for ongoing development of counter tags in C-Find
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
70
diff
changeset
|
2758 |
|
48740070cbf1
TDD: tests for ongoing development of counter tags in C-Find
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
70
diff
changeset
|
2759 def test_findscu_counters(self): |
|
48740070cbf1
TDD: tests for ongoing development of counter tags in C-Find
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
70
diff
changeset
|
2760 UploadInstance(_REMOTE, 'Comunix/Ct/IM-0001-0001.dcm') |
|
48740070cbf1
TDD: tests for ongoing development of counter tags in C-Find
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
70
diff
changeset
|
2761 UploadInstance(_REMOTE, 'Comunix/Pet/IM-0001-0001.dcm') |
|
48740070cbf1
TDD: tests for ongoing development of counter tags in C-Find
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
70
diff
changeset
|
2762 UploadInstance(_REMOTE, 'Comunix/Pet/IM-0001-0002.dcm') |
|
48740070cbf1
TDD: tests for ongoing development of counter tags in C-Find
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
70
diff
changeset
|
2763 |
|
48740070cbf1
TDD: tests for ongoing development of counter tags in C-Find
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
70
diff
changeset
|
2764 i = CallFindScu([ '-k', '0008,0052=PATIENT', '-k', 'NumberOfPatientRelatedStudies' ]) |
|
48740070cbf1
TDD: tests for ongoing development of counter tags in C-Find
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
70
diff
changeset
|
2765 s = re.findall('\(0020,1200\).*?\[(.*?)\]', i) |
|
48740070cbf1
TDD: tests for ongoing development of counter tags in C-Find
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
70
diff
changeset
|
2766 self.assertEqual(1, len(s)) |
|
48740070cbf1
TDD: tests for ongoing development of counter tags in C-Find
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
70
diff
changeset
|
2767 self.assertTrue('1 ' in s) |
|
48740070cbf1
TDD: tests for ongoing development of counter tags in C-Find
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
70
diff
changeset
|
2768 |
|
48740070cbf1
TDD: tests for ongoing development of counter tags in C-Find
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
70
diff
changeset
|
2769 i = CallFindScu([ '-k', '0008,0052=PATIENT', '-k', 'NumberOfPatientRelatedSeries' ]) |
|
48740070cbf1
TDD: tests for ongoing development of counter tags in C-Find
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
70
diff
changeset
|
2770 s = re.findall('\(0020,1202\).*?\[(.*?)\]', i) |
|
48740070cbf1
TDD: tests for ongoing development of counter tags in C-Find
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
70
diff
changeset
|
2771 self.assertEqual(1, len(s)) |
|
48740070cbf1
TDD: tests for ongoing development of counter tags in C-Find
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
70
diff
changeset
|
2772 self.assertTrue('2 ' in s) |
|
48740070cbf1
TDD: tests for ongoing development of counter tags in C-Find
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
70
diff
changeset
|
2773 |
|
48740070cbf1
TDD: tests for ongoing development of counter tags in C-Find
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
70
diff
changeset
|
2774 i = CallFindScu([ '-k', '0008,0052=PATIENT', '-k', 'NumberOfPatientRelatedInstances' ]) |
|
48740070cbf1
TDD: tests for ongoing development of counter tags in C-Find
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
70
diff
changeset
|
2775 s = re.findall('\(0020,1204\).*?\[(.*?)\]', i) |
|
48740070cbf1
TDD: tests for ongoing development of counter tags in C-Find
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
70
diff
changeset
|
2776 self.assertEqual(1, len(s)) |
|
48740070cbf1
TDD: tests for ongoing development of counter tags in C-Find
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
70
diff
changeset
|
2777 self.assertTrue('3 ' in s) |
|
48740070cbf1
TDD: tests for ongoing development of counter tags in C-Find
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
70
diff
changeset
|
2778 |
|
48740070cbf1
TDD: tests for ongoing development of counter tags in C-Find
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
70
diff
changeset
|
2779 i = CallFindScu([ '-k', '0008,0052=STUDY', '-k', 'NumberOfStudyRelatedSeries' ]) |
|
48740070cbf1
TDD: tests for ongoing development of counter tags in C-Find
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
70
diff
changeset
|
2780 s = re.findall('\(0020,1206\).*?\[(.*?)\]', i) |
|
48740070cbf1
TDD: tests for ongoing development of counter tags in C-Find
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
70
diff
changeset
|
2781 self.assertEqual(1, len(s)) |
|
48740070cbf1
TDD: tests for ongoing development of counter tags in C-Find
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
70
diff
changeset
|
2782 self.assertTrue('2 ' in s) |
|
48740070cbf1
TDD: tests for ongoing development of counter tags in C-Find
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
70
diff
changeset
|
2783 |
|
48740070cbf1
TDD: tests for ongoing development of counter tags in C-Find
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
70
diff
changeset
|
2784 i = CallFindScu([ '-k', '0008,0052=STUDY', '-k', 'NumberOfStudyRelatedInstances' ]) |
|
48740070cbf1
TDD: tests for ongoing development of counter tags in C-Find
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
70
diff
changeset
|
2785 s = re.findall('\(0020,1208\).*?\[(.*?)\]', i) |
|
48740070cbf1
TDD: tests for ongoing development of counter tags in C-Find
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
70
diff
changeset
|
2786 self.assertEqual(1, len(s)) |
|
48740070cbf1
TDD: tests for ongoing development of counter tags in C-Find
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
70
diff
changeset
|
2787 self.assertTrue('3 ' in s) |
|
48740070cbf1
TDD: tests for ongoing development of counter tags in C-Find
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
70
diff
changeset
|
2788 |
|
48740070cbf1
TDD: tests for ongoing development of counter tags in C-Find
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
70
diff
changeset
|
2789 i = CallFindScu([ '-k', '0008,0052=SERIES', '-k', 'NumberOfSeriesRelatedInstances' ]) |
|
48740070cbf1
TDD: tests for ongoing development of counter tags in C-Find
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
70
diff
changeset
|
2790 s = re.findall('\(0020,1209\).*?\[(.*?)\]', i) |
|
48740070cbf1
TDD: tests for ongoing development of counter tags in C-Find
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
70
diff
changeset
|
2791 self.assertEqual(2, len(s)) |
|
48740070cbf1
TDD: tests for ongoing development of counter tags in C-Find
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
70
diff
changeset
|
2792 self.assertTrue('1 ' in s) |
|
48740070cbf1
TDD: tests for ongoing development of counter tags in C-Find
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
70
diff
changeset
|
2793 self.assertTrue('2 ' in s) |
|
48740070cbf1
TDD: tests for ongoing development of counter tags in C-Find
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
70
diff
changeset
|
2794 |
|
48740070cbf1
TDD: tests for ongoing development of counter tags in C-Find
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
70
diff
changeset
|
2795 i = CallFindScu([ '-k', '0008,0052=STUDY', '-k', 'ModalitiesInStudy' ]) |
|
48740070cbf1
TDD: tests for ongoing development of counter tags in C-Find
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
70
diff
changeset
|
2796 s = re.findall('\(0008,0061\).*?\[(.*?)\]', i) |
|
48740070cbf1
TDD: tests for ongoing development of counter tags in C-Find
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
70
diff
changeset
|
2797 self.assertEqual(1, len(s)) |
|
48740070cbf1
TDD: tests for ongoing development of counter tags in C-Find
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
70
diff
changeset
|
2798 t = map(lambda x: x.strip(), s[0].split('\\')) |
|
48740070cbf1
TDD: tests for ongoing development of counter tags in C-Find
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
70
diff
changeset
|
2799 self.assertTrue('PT' in t) |
|
48740070cbf1
TDD: tests for ongoing development of counter tags in C-Find
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diff
changeset
|
2800 self.assertTrue('CT' in t) |
|
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parents:
70
diff
changeset
|
2801 |
|
48740070cbf1
TDD: tests for ongoing development of counter tags in C-Find
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parents:
70
diff
changeset
|
2802 i = CallFindScu([ '-k', '0008,0052=STUDY', '-k', 'SOPClassesInStudy' ]) |
|
48740070cbf1
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parents:
70
diff
changeset
|
2803 s = re.findall('\(0008,0062\).*?\[(.*?)\]', i) |
|
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parents:
70
diff
changeset
|
2804 self.assertEqual(1, len(s)) |
|
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parents:
70
diff
changeset
|
2805 t = map(lambda x: x.strip(), s[0].split('\\')) |
|
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parents:
70
diff
changeset
|
2806 self.assertTrue('1.2.840.10008.5.1.4.1.1.2' in t) |
|
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Sebastien Jodogne <s.jodogne@gmail.com>
parents:
70
diff
changeset
|
2807 self.assertTrue('1.2.840.10008.5.1.4.1.1.128' in t) |
|
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parents:
70
diff
changeset
|
2808 |
|
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parents:
70
diff
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|
2809 |
|
78
b89af51797ff
test_decode_transfer_syntax
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parents:
74
diff
changeset
|
2810 def test_decode_transfer_syntax(self): |
|
b89af51797ff
test_decode_transfer_syntax
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parents:
74
diff
changeset
|
2811 def Check(t, md5): |
|
b89af51797ff
test_decode_transfer_syntax
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parents:
74
diff
changeset
|
2812 i = UploadInstance(_REMOTE, 'TransferSyntaxes/%s.dcm' % t)['ID'] |
|
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parents:
74
diff
changeset
|
2813 |
|
89
74b7b9aed5f8
test TransferSyntax metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
87
diff
changeset
|
2814 if t != '1.2.840.10008.1.2': # This file has no meta header |
|
74b7b9aed5f8
test TransferSyntax metadata
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parents:
87
diff
changeset
|
2815 transferSyntax = DoGet(_REMOTE, '/instances/%s/metadata/TransferSyntax' % i) |
|
74b7b9aed5f8
test TransferSyntax metadata
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parents:
87
diff
changeset
|
2816 self.assertEqual(t, transferSyntax) |
|
74b7b9aed5f8
test TransferSyntax metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
87
diff
changeset
|
2817 |
|
78
b89af51797ff
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parents:
74
diff
changeset
|
2818 if md5 == None: |
|
b89af51797ff
test_decode_transfer_syntax
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parents:
74
diff
changeset
|
2819 self.assertRaises(Exception, lambda: DoGet(_REMOTE, '/instances/%s/preview' % i)) |
|
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parents:
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diff
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|
2820 else: |
|
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test_decode_transfer_syntax
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parents:
74
diff
changeset
|
2821 m = ComputeMD5(DoGet(_REMOTE, '/instances/%s/preview' % i)) |
|
b89af51797ff
test_decode_transfer_syntax
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parents:
74
diff
changeset
|
2822 self.assertEqual(m, md5) |
|
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test_decode_transfer_syntax
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
74
diff
changeset
|
2823 |
|
b89af51797ff
test_decode_transfer_syntax
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
74
diff
changeset
|
2824 Check('1.2.840.10008.1.2.1', 'fae08d5415c4c0cd2cdbae4522408631') |
|
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test_decode_transfer_syntax
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parents:
74
diff
changeset
|
2825 Check('1.2.840.10008.1.2.2', 'f3d9784768b8feb54d6a50b6d5c37682') |
|
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test_decode_transfer_syntax
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
74
diff
changeset
|
2826 Check('1.2.840.10008.1.2.4.50', '496326046974eea718dbc16b997c646b') |
|
b89af51797ff
test_decode_transfer_syntax
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
74
diff
changeset
|
2827 Check('1.2.840.10008.1.2.4.51', 'ccbe75909fe5c9f7361b48416a53fc41') |
|
b89af51797ff
test_decode_transfer_syntax
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
74
diff
changeset
|
2828 Check('1.2.840.10008.1.2.4.57', '7bbefe11d976b1be4e568915c6a82fc3') |
|
b89af51797ff
test_decode_transfer_syntax
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
74
diff
changeset
|
2829 Check('1.2.840.10008.1.2.4.70', '7132cfbc457305b04b59787030c785d2') |
|
b89af51797ff
test_decode_transfer_syntax
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
74
diff
changeset
|
2830 Check('1.2.840.10008.1.2.4.80', '6ff51ae525d362e0d04f550a64075a0e') |
|
b89af51797ff
test_decode_transfer_syntax
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
74
diff
changeset
|
2831 Check('1.2.840.10008.1.2.4.81', '801579ae7cbf28e604ea74f2c99fa2ca') |
|
b89af51797ff
test_decode_transfer_syntax
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
74
diff
changeset
|
2832 Check('1.2.840.10008.1.2.5', '6ff51ae525d362e0d04f550a64075a0e') # RLE, supported since Orthanc 1.0.1 |
|
b89af51797ff
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Sebastien Jodogne <s.jodogne@gmail.com>
parents:
74
diff
changeset
|
2833 Check('1.2.840.10008.1.2', 'd54aed9f67a100984b42942cc2e9939b') |
|
b89af51797ff
test_decode_transfer_syntax
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
74
diff
changeset
|
2834 Check('1.2.840.10008.1.2.4.90', None) # JPEG-2000 image, not supported |
|
b89af51797ff
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parents:
74
diff
changeset
|
2835 Check('1.2.840.10008.1.2.4.91', None) # JPEG-2000 image, not supported |
| 79 | 2836 |
| 2837 | |
| 2838 def test_raw_frame(self): | |
| 2839 s = UploadInstance(_REMOTE, 'Issue22.dcm')['ID'] | |
| 2840 self.assertEqual(24, len(DoGet(_REMOTE, '/instances/%s/frames' % s))) | |
| 2841 a = DoGet(_REMOTE, '/instances/%s/frames/0/raw' % s) | |
| 2842 self.assertEqual(512 * 512 * 2, len(a)) | |
| 2843 self.assertEqual(512 * 512 * 2, len(DoGet(_REMOTE, '/instances/%s/frames/23/raw' % s))) | |
| 2844 self.assertRaises(Exception, lambda: DoGet(_REMOTE, '/instances/%s/frames/24/raw' % s)) | |
| 2845 self.assertEqual('1914287dc4d958eca21fdaacfb3482fa', ComputeMD5(a)) | |
| 2846 | |
| 2847 s = UploadInstance(_REMOTE, 'Multiframe.dcm')['ID'] | |
| 2848 self.assertEqual(76, len(DoGet(_REMOTE, '/instances/%s/frames' % s))) | |
| 2849 self.assertEqual(186274, len(DoGet(_REMOTE, '/instances/%s/frames/0/raw' % s))) | |
| 2850 self.assertEqual(189424, len(DoGet(_REMOTE, '/instances/%s/frames/75/raw' % s))) | |
| 2851 self.assertRaises(Exception, lambda: DoGet(_REMOTE, '/instances/%s/frames/76/raw' % s)) | |
| 2852 im = GetImage(_REMOTE, '/instances/%s/frames/0/raw' % s) | |
| 2853 self.assertEqual("L", im.mode) | |
| 2854 self.assertEqual(512, im.size[0]) | |
| 2855 self.assertEqual(512, im.size[1]) | |
| 2856 | |
| 2857 # Test an image with 2 JPEG frames spread over multiple fragments | |
| 2858 s = UploadInstance(_REMOTE, 'LenaTwiceWithFragments.dcm')['ID'] | |
| 2859 self.assertEqual(2, len(DoGet(_REMOTE, '/instances/%s/frames' % s))) | |
| 2860 a = DoGet(_REMOTE, '/instances/%s/frames/0/raw' % s) | |
| 2861 b = DoGet(_REMOTE, '/instances/%s/frames/1/raw' % s) | |
| 2862 self.assertEqual(69214, len(a)) | |
| 2863 self.assertEqual(ComputeMD5(a), ComputeMD5(b)) | |
| 2864 self.assertRaises(Exception, lambda: DoGet(_REMOTE, '/instances/%s/frames/2/raw' % s)) | |
| 2865 im = GetImage(_REMOTE, '/instances/%s/frames/0/raw' % s) | |
| 2866 self.assertEqual("RGB", im.mode) | |
| 2867 self.assertEqual(512, im.size[0]) | |
| 2868 self.assertEqual(512, im.size[1]) | |
| 2869 im = GetImage(_REMOTE, '/instances/%s/frames/0/preview' % s) | |
| 2870 self.assertEqual("RGB", im.mode) | |
| 2871 self.assertEqual(512, im.size[0]) | |
| 2872 self.assertEqual(512, im.size[1]) | |
| 81 | 2873 |
| 2874 | |
| 2875 | |
| 2876 def test_rest_movescu(self): | |
| 2877 self.assertEqual(0, len(DoGet(_REMOTE, '/patients'))) | |
| 2878 | |
| 2879 # Upload 4 instances | |
| 2880 UploadInstance(_REMOTE, 'Brainix/Flair/IM-0001-0001.dcm') | |
| 2881 UploadInstance(_REMOTE, 'Brainix/Flair/IM-0001-0002.dcm') | |
| 2882 UploadInstance(_REMOTE, 'Brainix/Epi/IM-0001-0001.dcm') | |
| 2883 UploadInstance(_REMOTE, 'Knee/T2/IM-0001-0001.dcm') | |
| 2884 | |
| 2885 self.assertEqual(2, len(DoGet(_REMOTE, '/patients'))) | |
| 2886 for p in DoGet(_REMOTE, '/patients'): | |
| 2887 DoPost(_REMOTE, '/modalities/orthanctest/store', p) | |
| 2888 DoDelete(_REMOTE, '/patients/%s' % p) | |
| 2889 | |
| 2890 self.assertEqual(0, len(DoGet(_REMOTE, '/patients'))) | |
| 2891 | |
| 2892 # Upload instance Brainix/Flair/IM-0001-0001.dcm | |
| 2893 DoPost(_REMOTE, '/modalities/orthanctest/move', { 'Level' : 'Instance', | |
| 2894 'Resources' : [ | |
| 2895 { | |
| 2896 'StudyInstanceUID' : '2.16.840.1.113669.632.20.1211.10000357775', | |
| 2897 'SeriesInstanceUID' : '1.3.46.670589.11.0.0.11.4.2.0.8743.5.5396.2006120114285654497', | |
| 2898 'SOPInstanceUID' : '1.3.46.670589.11.0.0.11.4.2.0.8743.5.5396.2006120114314079549', | |
| 2899 } | |
| 2900 ]}) | |
| 2901 | |
| 2902 # Upload series Brainix/Flair/* | |
| 2903 self.assertEqual(1, len(DoGet(_REMOTE, '/patients'))) | |
| 2904 self.assertEqual(1, len(DoGet(_REMOTE, '/studies'))) | |
| 2905 self.assertEqual(1, len(DoGet(_REMOTE, '/series'))) | |
| 2906 self.assertEqual(1, len(DoGet(_REMOTE, '/instances'))) | |
| 2907 | |
| 2908 DoPost(_REMOTE, '/modalities/orthanctest/move', { 'Level' : 'Series', | |
| 2909 'Resources' : [ | |
| 2910 { | |
| 2911 'StudyInstanceUID' : '2.16.840.1.113669.632.20.1211.10000357775', | |
| 2912 'SeriesInstanceUID' : '1.3.46.670589.11.0.0.11.4.2.0.8743.5.5396.2006120114285654497', | |
| 2913 } | |
| 2914 ]}) | |
| 2915 self.assertEqual(1, len(DoGet(_REMOTE, '/patients'))) | |
| 2916 self.assertEqual(1, len(DoGet(_REMOTE, '/studies'))) | |
| 2917 self.assertEqual(1, len(DoGet(_REMOTE, '/series'))) | |
| 2918 self.assertEqual(2, len(DoGet(_REMOTE, '/instances'))) | |
| 2919 | |
| 2920 # Upload series Brainix/Epi/* | |
| 2921 DoPost(_REMOTE, '/modalities/orthanctest/move', { 'Level' : 'Series', | |
| 2922 'Resources' : [ | |
| 2923 { | |
| 2924 'StudyInstanceUID' : '2.16.840.1.113669.632.20.1211.10000357775', | |
| 2925 'SeriesInstanceUID' : '1.3.46.670589.11.0.0.11.4.2.0.8743.5.5396.2006120114314125550', | |
| 2926 } | |
| 2927 ]}) | |
| 2928 self.assertEqual(1, len(DoGet(_REMOTE, '/patients'))) | |
| 2929 self.assertEqual(1, len(DoGet(_REMOTE, '/studies'))) | |
| 2930 self.assertEqual(2, len(DoGet(_REMOTE, '/series'))) | |
| 2931 self.assertEqual(3, len(DoGet(_REMOTE, '/instances'))) | |
| 2932 | |
| 2933 # Upload study Knee/* | |
| 2934 DoPost(_REMOTE, '/modalities/orthanctest/move', { 'Level' : 'Study', | |
| 2935 'Resources' : [ | |
| 2936 { | |
| 2937 'StudyInstanceUID' : '2.16.840.1.113669.632.20.121711.10000160881', | |
| 2938 } | |
| 2939 ]}) | |
| 2940 self.assertEqual(2, len(DoGet(_REMOTE, '/patients'))) | |
| 2941 self.assertEqual(2, len(DoGet(_REMOTE, '/studies'))) | |
| 2942 self.assertEqual(3, len(DoGet(_REMOTE, '/series'))) | |
| 2943 self.assertEqual(4, len(DoGet(_REMOTE, '/instances'))) | |
| 2944 | |
| 2945 # Reset | |
| 2946 for p in DoGet(_REMOTE, '/patients'): | |
| 2947 DoDelete(_REMOTE, '/patients/%s' % p) | |
| 2948 | |
| 2949 self.assertEqual(0, len(DoGet(_REMOTE, '/patients'))) | |
| 2950 | |
| 2951 | |
| 2952 # Upload all at once | |
| 2953 DoPost(_REMOTE, '/modalities/orthanctest/move', { 'Level' : 'Study', | |
| 2954 'Resources' : [ | |
| 2955 { | |
| 2956 'StudyInstanceUID' : '2.16.840.1.113669.632.20.121711.10000160881', | |
| 2957 }, | |
| 2958 { | |
| 2959 'StudyInstanceUID' : '2.16.840.1.113669.632.20.1211.10000357775', | |
| 2960 } | |
| 2961 ]}) | |
| 2962 self.assertEqual(2, len(DoGet(_REMOTE, '/patients'))) | |
| 2963 self.assertEqual(2, len(DoGet(_REMOTE, '/studies'))) | |
| 2964 self.assertEqual(3, len(DoGet(_REMOTE, '/series'))) | |
| 2965 self.assertEqual(4, len(DoGet(_REMOTE, '/instances'))) | |
| 2966 | |
|
86
0401ef51f5c1
test_reconstruct_json
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parents:
83
diff
changeset
|
2967 |
|
0401ef51f5c1
test_reconstruct_json
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
83
diff
changeset
|
2968 |
|
0401ef51f5c1
test_reconstruct_json
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parents:
83
diff
changeset
|
2969 def test_reconstruct_json(self): |
|
0401ef51f5c1
test_reconstruct_json
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parents:
83
diff
changeset
|
2970 self.assertEqual(0, len(DoGet(_REMOTE, '/patients'))) |
|
0401ef51f5c1
test_reconstruct_json
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
83
diff
changeset
|
2971 |
|
0401ef51f5c1
test_reconstruct_json
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
83
diff
changeset
|
2972 instance = UploadInstance(_REMOTE, 'DummyCT.dcm')['ID'] |
|
0401ef51f5c1
test_reconstruct_json
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parents:
83
diff
changeset
|
2973 first = DoGet(_REMOTE, '/instances/%s/tags' % instance) |
|
0401ef51f5c1
test_reconstruct_json
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parents:
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diff
changeset
|
2974 |
|
0401ef51f5c1
test_reconstruct_json
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parents:
83
diff
changeset
|
2975 self.assertEqual('TWINOW', first['0008,1010']['Value']) |
|
0401ef51f5c1
test_reconstruct_json
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parents:
83
diff
changeset
|
2976 self.assertEqual(2, len(DoGet(_REMOTE, '/instances/%s/attachments' % instance))) |
|
0401ef51f5c1
test_reconstruct_json
Sebastien Jodogne <s.jodogne@gmail.com>
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diff
changeset
|
2977 |
|
0401ef51f5c1
test_reconstruct_json
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parents:
83
diff
changeset
|
2978 # Cannot delete the "DICOM" attachment |
|
0401ef51f5c1
test_reconstruct_json
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parents:
83
diff
changeset
|
2979 self.assertRaises(Exception, lambda: DoDelete(_REMOTE, '/instances/%s/attachments/dicom' % instance)) |
|
0401ef51f5c1
test_reconstruct_json
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
changeset
|
2980 |
|
0401ef51f5c1
test_reconstruct_json
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parents:
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diff
changeset
|
2981 # Can delete the "DICOM as JSON" attachment |
|
0401ef51f5c1
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parents:
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diff
changeset
|
2982 r = DoDelete(_REMOTE, '/instances/%s/attachments/dicom-as-json' % instance) |
|
0401ef51f5c1
test_reconstruct_json
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parents:
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diff
changeset
|
2983 self.assertTrue(type(r) is dict and len(r) == 0) |
|
0401ef51f5c1
test_reconstruct_json
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
changeset
|
2984 |
|
0401ef51f5c1
test_reconstruct_json
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parents:
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diff
changeset
|
2985 # Only the "DICOM" attachment subsists |
|
0401ef51f5c1
test_reconstruct_json
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
83
diff
changeset
|
2986 self.assertEqual(1, len(DoGet(_REMOTE, '/instances/%s/attachments' % instance))) |
|
0401ef51f5c1
test_reconstruct_json
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parents:
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diff
changeset
|
2987 |
|
0401ef51f5c1
test_reconstruct_json
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parents:
83
diff
changeset
|
2988 # Cannot manually reconstruct the "DICOM as JSON" attachment |
|
0401ef51f5c1
test_reconstruct_json
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parents:
83
diff
changeset
|
2989 self.assertRaises(Exception, lambda: DoPut(_REMOTE, '/patients/%s/attachments/dicom-as-json' % patient, 'hello')) |
|
0401ef51f5c1
test_reconstruct_json
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parents:
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diff
changeset
|
2990 |
|
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test_reconstruct_json
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parents:
83
diff
changeset
|
2991 # Transparently reconstruct the "DICOM as JSON" attachment |
|
0401ef51f5c1
test_reconstruct_json
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parents:
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diff
changeset
|
2992 self.assertRaises(Exception, lambda: DoGet(_REMOTE, '/instances/%s/attachments/dicom-as-json' % instance)) |
|
0401ef51f5c1
test_reconstruct_json
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parents:
83
diff
changeset
|
2993 second = DoGet(_REMOTE, '/instances/%s/tags' % instance) |
|
0401ef51f5c1
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parents:
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diff
changeset
|
2994 self.assertEqual(2, len(DoGet(_REMOTE, '/instances/%s/attachments' % instance))) |
|
0401ef51f5c1
test_reconstruct_json
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
83
diff
changeset
|
2995 |
|
0401ef51f5c1
test_reconstruct_json
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
83
diff
changeset
|
2996 third = DoGet(_REMOTE, '/instances/%s/attachments/dicom-as-json/data' % instance) |
|
0401ef51f5c1
test_reconstruct_json
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
83
diff
changeset
|
2997 self.assertEqual(str(first), str(second)) |
|
0401ef51f5c1
test_reconstruct_json
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
83
diff
changeset
|
2998 self.assertEqual(str(first), str(third)) |
|
87
4b24faec842b
test_reconstruct_json2 + test_private_tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
86
diff
changeset
|
2999 |
|
4b24faec842b
test_reconstruct_json2 + test_private_tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
86
diff
changeset
|
3000 |
|
4b24faec842b
test_reconstruct_json2 + test_private_tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
86
diff
changeset
|
3001 def test_reconstruct_json2(self): |
|
4b24faec842b
test_reconstruct_json2 + test_private_tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
86
diff
changeset
|
3002 self.assertEqual(0, len(DoGet(_REMOTE, '/patients'))) |
|
4b24faec842b
test_reconstruct_json2 + test_private_tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
86
diff
changeset
|
3003 |
|
4b24faec842b
test_reconstruct_json2 + test_private_tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
86
diff
changeset
|
3004 a = UploadInstance(_REMOTE, 'Brainix/Flair/IM-0001-0001.dcm')['ID'] |
|
4b24faec842b
test_reconstruct_json2 + test_private_tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
86
diff
changeset
|
3005 b = UploadInstance(_REMOTE, 'Knee/T2/IM-0001-0001.dcm')['ID'] |
|
4b24faec842b
test_reconstruct_json2 + test_private_tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
86
diff
changeset
|
3006 |
|
4b24faec842b
test_reconstruct_json2 + test_private_tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
86
diff
changeset
|
3007 self.assertEqual('BRAINIX', DoGet(_REMOTE, '/instances/%s/tags?simplify' % a)['PatientName']) |
|
4b24faec842b
test_reconstruct_json2 + test_private_tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
86
diff
changeset
|
3008 self.assertEqual('KNEE', DoGet(_REMOTE, '/instances/%s/tags?simplify' % b)['PatientName']) |
|
4b24faec842b
test_reconstruct_json2 + test_private_tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
86
diff
changeset
|
3009 |
|
4b24faec842b
test_reconstruct_json2 + test_private_tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
86
diff
changeset
|
3010 self.assertEqual(2, len(DoGet(_REMOTE, '/instances/%s/attachments' % a))) |
|
4b24faec842b
test_reconstruct_json2 + test_private_tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
86
diff
changeset
|
3011 self.assertEqual(2, len(DoGet(_REMOTE, '/instances/%s/attachments' % b))) |
|
4b24faec842b
test_reconstruct_json2 + test_private_tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
86
diff
changeset
|
3012 |
|
4b24faec842b
test_reconstruct_json2 + test_private_tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
86
diff
changeset
|
3013 DoPost(_REMOTE, '/tools/invalidate-tags', '', 'text/plain') |
|
4b24faec842b
test_reconstruct_json2 + test_private_tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
86
diff
changeset
|
3014 |
|
4b24faec842b
test_reconstruct_json2 + test_private_tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
86
diff
changeset
|
3015 self.assertEqual(1, len(DoGet(_REMOTE, '/instances/%s/attachments' % a))) |
|
4b24faec842b
test_reconstruct_json2 + test_private_tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
86
diff
changeset
|
3016 self.assertEqual(1, len(DoGet(_REMOTE, '/instances/%s/attachments' % b))) |
|
4b24faec842b
test_reconstruct_json2 + test_private_tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
86
diff
changeset
|
3017 |
|
4b24faec842b
test_reconstruct_json2 + test_private_tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
86
diff
changeset
|
3018 self.assertEqual('BRAINIX', DoGet(_REMOTE, '/instances/%s/tags?simplify' % a)['PatientName']) |
|
4b24faec842b
test_reconstruct_json2 + test_private_tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
86
diff
changeset
|
3019 self.assertEqual('KNEE', DoGet(_REMOTE, '/instances/%s/tags?simplify' % b)['PatientName']) |
|
4b24faec842b
test_reconstruct_json2 + test_private_tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
86
diff
changeset
|
3020 |
|
4b24faec842b
test_reconstruct_json2 + test_private_tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
86
diff
changeset
|
3021 self.assertEqual(2, len(DoGet(_REMOTE, '/instances/%s/attachments' % a))) |
|
4b24faec842b
test_reconstruct_json2 + test_private_tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
86
diff
changeset
|
3022 self.assertEqual(2, len(DoGet(_REMOTE, '/instances/%s/attachments' % b))) |
|
4b24faec842b
test_reconstruct_json2 + test_private_tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
86
diff
changeset
|
3023 |
|
4b24faec842b
test_reconstruct_json2 + test_private_tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
86
diff
changeset
|
3024 |
|
4b24faec842b
test_reconstruct_json2 + test_private_tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
86
diff
changeset
|
3025 def test_private_tags(self): |
|
4b24faec842b
test_reconstruct_json2 + test_private_tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
86
diff
changeset
|
3026 i = UploadInstance(_REMOTE, 'PrivateMDNTags.dcm')['ID'] |
|
4b24faec842b
test_reconstruct_json2 + test_private_tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
86
diff
changeset
|
3027 t = DoGet(_REMOTE, '/instances/%s/tags?simplify' % i) |
|
4b24faec842b
test_reconstruct_json2 + test_private_tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
86
diff
changeset
|
3028 self.assertEqual('1.2.840.113704.1.111.6320.1342451261.21', t['PET-CT Multi Modality Name']) |
|
4b24faec842b
test_reconstruct_json2 + test_private_tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
86
diff
changeset
|
3029 self.assertEqual('p37s0_na_ctac.img', t['Original Image Filename']) |
|
4b24faec842b
test_reconstruct_json2 + test_private_tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
86
diff
changeset
|
3030 |
|
92
dbcbffb889da
test_findscu_encoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
89
diff
changeset
|
3031 |
|
dbcbffb889da
test_findscu_encoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
89
diff
changeset
|
3032 def test_findscu_encoding(self): |
|
dbcbffb889da
test_findscu_encoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
89
diff
changeset
|
3033 # Check out ../Database/Encodings/Generate.sh |
|
dbcbffb889da
test_findscu_encoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
89
diff
changeset
|
3034 TEST = u'Test-éüäöòДΘĝדصķћ๛ﾈİ' |
|
dbcbffb889da
test_findscu_encoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
89
diff
changeset
|
3035 ENCODINGS = { |
|
dbcbffb889da
test_findscu_encoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
89
diff
changeset
|
3036 'Arabic' : [ 'ISO_IR 127' ], |
|
dbcbffb889da
test_findscu_encoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
89
diff
changeset
|
3037 'Ascii' : [ 'ISO_IR 6' ], # More accurately, ISO 646 |
|
dbcbffb889da
test_findscu_encoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
89
diff
changeset
|
3038 'Cyrillic' : [ 'ISO_IR 144' ], |
|
dbcbffb889da
test_findscu_encoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
89
diff
changeset
|
3039 'Greek' : [ 'ISO_IR 126' ], |
|
dbcbffb889da
test_findscu_encoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
89
diff
changeset
|
3040 'Hebrew' : [ 'ISO_IR 138' ], |
|
dbcbffb889da
test_findscu_encoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
89
diff
changeset
|
3041 'Japanese' : [ 'ISO_IR 13', 'shift-jis' ], |
|
dbcbffb889da
test_findscu_encoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
89
diff
changeset
|
3042 'Latin1' : [ 'ISO_IR 100' ], |
|
dbcbffb889da
test_findscu_encoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
89
diff
changeset
|
3043 'Latin2' : [ 'ISO_IR 101' ], |
|
dbcbffb889da
test_findscu_encoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
89
diff
changeset
|
3044 'Latin3' : [ 'ISO_IR 109' ], |
|
dbcbffb889da
test_findscu_encoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
89
diff
changeset
|
3045 'Latin4' : [ 'ISO_IR 110' ], |
|
dbcbffb889da
test_findscu_encoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
89
diff
changeset
|
3046 'Latin5' : [ 'ISO_IR 148' ], |
|
dbcbffb889da
test_findscu_encoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
89
diff
changeset
|
3047 'Thai' : [ 'ISO_IR 166', 'tis-620' ], |
|
dbcbffb889da
test_findscu_encoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
89
diff
changeset
|
3048 'Utf8' : [ 'ISO_IR 192' ], |
|
dbcbffb889da
test_findscu_encoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
89
diff
changeset
|
3049 } |
|
dbcbffb889da
test_findscu_encoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
89
diff
changeset
|
3050 |
|
dbcbffb889da
test_findscu_encoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
89
diff
changeset
|
3051 for name in ENCODINGS.iterkeys(): |
|
dbcbffb889da
test_findscu_encoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
89
diff
changeset
|
3052 if len(ENCODINGS[name]) == 1: |
|
dbcbffb889da
test_findscu_encoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
89
diff
changeset
|
3053 ENCODINGS[name].append(name.lower()) |
|
dbcbffb889da
test_findscu_encoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
89
diff
changeset
|
3054 |
|
dbcbffb889da
test_findscu_encoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
89
diff
changeset
|
3055 UploadInstance(_REMOTE, 'Encodings/Lena-utf8.dcm') |
|
dbcbffb889da
test_findscu_encoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
89
diff
changeset
|
3056 |
|
dbcbffb889da
test_findscu_encoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
89
diff
changeset
|
3057 for name in ENCODINGS.iterkeys(): |
|
dbcbffb889da
test_findscu_encoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
89
diff
changeset
|
3058 self.assertEqual(name, DoPut(_REMOTE, '/tools/default-encoding', name)) |
|
dbcbffb889da
test_findscu_encoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
89
diff
changeset
|
3059 self.assertEqual(name, DoGet(_REMOTE, '/tools/default-encoding')) |
|
dbcbffb889da
test_findscu_encoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
89
diff
changeset
|
3060 |
|
dbcbffb889da
test_findscu_encoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
89
diff
changeset
|
3061 i = CallFindScu([ '-k', '0008,0052=STUDY', |
|
dbcbffb889da
test_findscu_encoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
89
diff
changeset
|
3062 '-k', 'SpecificCharacterSet', |
|
dbcbffb889da
test_findscu_encoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
89
diff
changeset
|
3063 '-k', 'PatientName' ]) |
|
dbcbffb889da
test_findscu_encoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
89
diff
changeset
|
3064 |
|
dbcbffb889da
test_findscu_encoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
89
diff
changeset
|
3065 characterSet = re.findall('\(0008,0005\).*?\[(.*?)\]', i) |
|
dbcbffb889da
test_findscu_encoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
89
diff
changeset
|
3066 self.assertEqual(1, len(characterSet)) |
|
dbcbffb889da
test_findscu_encoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
89
diff
changeset
|
3067 self.assertEqual(ENCODINGS[name][0], characterSet[0].strip()) |
|
dbcbffb889da
test_findscu_encoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
89
diff
changeset
|
3068 |
|
dbcbffb889da
test_findscu_encoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
89
diff
changeset
|
3069 patientName = re.findall('\(0010,0010\).*?\[(.*?)\]', i) |
|
dbcbffb889da
test_findscu_encoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
89
diff
changeset
|
3070 self.assertEqual(1, len(patientName)) |
|
dbcbffb889da
test_findscu_encoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
89
diff
changeset
|
3071 |
|
dbcbffb889da
test_findscu_encoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
89
diff
changeset
|
3072 expected = TEST.encode(ENCODINGS[name][1], 'ignore') |
|
dbcbffb889da
test_findscu_encoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
89
diff
changeset
|
3073 self.assertEqual(expected, patientName[0].strip()) |
|
dbcbffb889da
test_findscu_encoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
89
diff
changeset
|
3074 |
|
dbcbffb889da
test_findscu_encoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
89
diff
changeset
|
3075 |
|
dbcbffb889da
test_findscu_encoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
89
diff
changeset
|
3076 #for master in ENCODINGS: |
|
dbcbffb889da
test_findscu_encoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
89
diff
changeset
|
3077 for master in [ 'Latin1', 'Utf8', 'Cyrillic' ]: # Shortcut to speedup tests |
|
dbcbffb889da
test_findscu_encoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
89
diff
changeset
|
3078 self.assertEqual(master, DoPut(_REMOTE, '/tools/default-encoding', master)) |
|
dbcbffb889da
test_findscu_encoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
89
diff
changeset
|
3079 self.assertEqual(master, DoGet(_REMOTE, '/tools/default-encoding')) |
|
dbcbffb889da
test_findscu_encoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
89
diff
changeset
|
3080 |
|
dbcbffb889da
test_findscu_encoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
89
diff
changeset
|
3081 for name in ENCODINGS: |
|
dbcbffb889da
test_findscu_encoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
89
diff
changeset
|
3082 DropOrthanc(_REMOTE) |
|
dbcbffb889da
test_findscu_encoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
89
diff
changeset
|
3083 UploadInstance(_REMOTE, 'Encodings/Lena-%s.dcm' % ENCODINGS[name][1]) |
|
dbcbffb889da
test_findscu_encoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
89
diff
changeset
|
3084 |
|
dbcbffb889da
test_findscu_encoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
89
diff
changeset
|
3085 i = CallFindScu([ '-k', '0008,0052=STUDY', |
|
dbcbffb889da
test_findscu_encoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
89
diff
changeset
|
3086 '-k', 'PatientID', |
|
dbcbffb889da
test_findscu_encoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
89
diff
changeset
|
3087 '-k', 'SpecificCharacterSet', |
|
dbcbffb889da
test_findscu_encoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
89
diff
changeset
|
3088 '-k', 'PatientName' ]) |
|
dbcbffb889da
test_findscu_encoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
89
diff
changeset
|
3089 i = i.decode(ENCODINGS[master][1]) |
|
dbcbffb889da
test_findscu_encoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
89
diff
changeset
|
3090 |
|
dbcbffb889da
test_findscu_encoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
89
diff
changeset
|
3091 characterSet = re.findall('\(0008,0005\).*?\[(.*?)\]', i) |
|
dbcbffb889da
test_findscu_encoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
89
diff
changeset
|
3092 self.assertEqual(1, len(characterSet)) |
|
dbcbffb889da
test_findscu_encoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
89
diff
changeset
|
3093 self.assertEqual(ENCODINGS[master][0], characterSet[0].strip()) |
|
dbcbffb889da
test_findscu_encoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
89
diff
changeset
|
3094 |
|
dbcbffb889da
test_findscu_encoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
89
diff
changeset
|
3095 patientId = re.findall('\(0010,0020\).*?\[(.*?)\]', i) |
|
dbcbffb889da
test_findscu_encoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
89
diff
changeset
|
3096 self.assertEqual(1, len(patientId)) |
|
dbcbffb889da
test_findscu_encoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
89
diff
changeset
|
3097 self.assertEqual(ENCODINGS[name][1], patientId[0].strip()) |
|
dbcbffb889da
test_findscu_encoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
89
diff
changeset
|
3098 |
|
dbcbffb889da
test_findscu_encoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
89
diff
changeset
|
3099 patientName = re.findall('\(0010,0010\).*?\[(.*?)\]', i) |
|
dbcbffb889da
test_findscu_encoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
89
diff
changeset
|
3100 self.assertEqual(1, len(patientName)) |
|
dbcbffb889da
test_findscu_encoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
89
diff
changeset
|
3101 |
|
dbcbffb889da
test_findscu_encoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
89
diff
changeset
|
3102 tmp = ENCODINGS[name][1] |
|
dbcbffb889da
test_findscu_encoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
89
diff
changeset
|
3103 expected = TEST.encode(tmp, 'ignore').decode(tmp) |
|
dbcbffb889da
test_findscu_encoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
89
diff
changeset
|
3104 tmp = ENCODINGS[master][1] |
|
dbcbffb889da
test_findscu_encoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
89
diff
changeset
|
3105 expected = expected.encode(tmp, 'ignore').decode(tmp) |
|
dbcbffb889da
test_findscu_encoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
89
diff
changeset
|
3106 |
|
dbcbffb889da
test_findscu_encoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
89
diff
changeset
|
3107 self.assertEqual(expected, patientName[0].strip()) |
|
dbcbffb889da
test_findscu_encoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
89
diff
changeset
|
3108 |
|
dbcbffb889da
test_findscu_encoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
89
diff
changeset
|
3109 |
|
dbcbffb889da
test_findscu_encoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
89
diff
changeset
|
3110 a = DoPost(_REMOTE, '/tools/find', { 'Expand' : True, |
|
dbcbffb889da
test_findscu_encoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
89
diff
changeset
|
3111 'Level' : 'Study', |
|
dbcbffb889da
test_findscu_encoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
89
diff
changeset
|
3112 'Query' : { }}) |
|
dbcbffb889da
test_findscu_encoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
89
diff
changeset
|
3113 self.assertEqual(1, len(a)) |
|
dbcbffb889da
test_findscu_encoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
89
diff
changeset
|
3114 |
|
dbcbffb889da
test_findscu_encoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
89
diff
changeset
|
3115 tmp = ENCODINGS[name][1] |
|
dbcbffb889da
test_findscu_encoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
89
diff
changeset
|
3116 self.assertEqual(TEST.encode(tmp, 'ignore').decode(tmp), a[0]["PatientMainDicomTags"]["PatientName"]) |
|
96
272d1229cb49
test reconstruction of tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
95
diff
changeset
|
3117 |
|
272d1229cb49
test reconstruction of tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
95
diff
changeset
|
3118 |
|
272d1229cb49
test reconstruction of tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
95
diff
changeset
|
3119 def test_reconstruct(self): |
|
272d1229cb49
test reconstruction of tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
95
diff
changeset
|
3120 def CompareMainDicomTag(expected, instance, level, tag): |
|
272d1229cb49
test reconstruction of tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
95
diff
changeset
|
3121 self.assertEqual(expected, DoGet(_REMOTE, '/instances/%s/%s' % (instance, level))['MainDicomTags'][tag].strip()) |
|
272d1229cb49
test reconstruction of tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
95
diff
changeset
|
3122 |
|
272d1229cb49
test reconstruction of tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
95
diff
changeset
|
3123 a = UploadInstance(_REMOTE, 'DummyCT.dcm')['ID'] |
|
272d1229cb49
test reconstruction of tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
95
diff
changeset
|
3124 |
|
272d1229cb49
test reconstruction of tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
95
diff
changeset
|
3125 studies = DoGet(_REMOTE, '/studies/') |
|
272d1229cb49
test reconstruction of tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
95
diff
changeset
|
3126 self.assertEqual(1, len(DoGet(_REMOTE, '/patients/'))) |
|
272d1229cb49
test reconstruction of tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
95
diff
changeset
|
3127 self.assertEqual(1, len(studies)) |
|
272d1229cb49
test reconstruction of tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
95
diff
changeset
|
3128 self.assertEqual(1, len(DoGet(_REMOTE, '/series/'))) |
|
272d1229cb49
test reconstruction of tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
95
diff
changeset
|
3129 self.assertEqual(1, len(DoGet(_REMOTE, '/instances/'))) |
|
272d1229cb49
test reconstruction of tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
95
diff
changeset
|
3130 |
|
272d1229cb49
test reconstruction of tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
95
diff
changeset
|
3131 modified = DoPost(_REMOTE, '/studies/%s/modify' % studies[0], { |
|
272d1229cb49
test reconstruction of tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
95
diff
changeset
|
3132 "Replace" : { |
|
272d1229cb49
test reconstruction of tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
95
diff
changeset
|
3133 "StudyDescription" : "hello", |
|
272d1229cb49
test reconstruction of tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
95
diff
changeset
|
3134 "SeriesDescription" : "world", |
|
272d1229cb49
test reconstruction of tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
95
diff
changeset
|
3135 "SOPClassUID" : "test", |
|
272d1229cb49
test reconstruction of tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
95
diff
changeset
|
3136 "SOPInstanceUID" : "myid", |
|
272d1229cb49
test reconstruction of tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
95
diff
changeset
|
3137 }, |
| 119 | 3138 "Keep" : [ "StudyInstanceUID", "SeriesInstanceUID" ], |
| 3139 "Force" : True | |
|
96
272d1229cb49
test reconstruction of tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
95
diff
changeset
|
3140 }) |
|
272d1229cb49
test reconstruction of tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
95
diff
changeset
|
3141 |
|
272d1229cb49
test reconstruction of tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
95
diff
changeset
|
3142 instances = DoGet(_REMOTE, '/instances/') |
|
272d1229cb49
test reconstruction of tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
95
diff
changeset
|
3143 self.assertEqual(1, len(DoGet(_REMOTE, '/patients/'))) |
|
272d1229cb49
test reconstruction of tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
95
diff
changeset
|
3144 self.assertEqual(1, len(DoGet(_REMOTE, '/studies/'))) |
|
272d1229cb49
test reconstruction of tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
95
diff
changeset
|
3145 self.assertEqual(1, len(DoGet(_REMOTE, '/series/'))) |
|
272d1229cb49
test reconstruction of tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
95
diff
changeset
|
3146 self.assertEqual(2, len(instances)) |
|
272d1229cb49
test reconstruction of tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
95
diff
changeset
|
3147 |
|
272d1229cb49
test reconstruction of tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
95
diff
changeset
|
3148 b = instances[0] if instances[1] == a else instances[1] |
|
272d1229cb49
test reconstruction of tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
95
diff
changeset
|
3149 |
|
272d1229cb49
test reconstruction of tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
95
diff
changeset
|
3150 CompareMainDicomTag('Knee (R)', a, 'study', 'StudyDescription') |
|
272d1229cb49
test reconstruction of tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
95
diff
changeset
|
3151 CompareMainDicomTag('AX. FSE PD', a, 'series', 'SeriesDescription') |
|
272d1229cb49
test reconstruction of tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
95
diff
changeset
|
3152 CompareMainDicomTag('1.2.840.113619.2.176.2025.1499492.7040.1171286242.109', a, '', 'SOPInstanceUID') |
|
272d1229cb49
test reconstruction of tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
95
diff
changeset
|
3153 CompareMainDicomTag('myid', b, '', 'SOPInstanceUID') |
|
272d1229cb49
test reconstruction of tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
95
diff
changeset
|
3154 self.assertEqual('1.2.840.10008.5.1.4.1.1.4', DoGet(_REMOTE, '/instances/%s/metadata/SopClassUid' % a).strip()) |
|
272d1229cb49
test reconstruction of tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
95
diff
changeset
|
3155 self.assertEqual('test', DoGet(_REMOTE, '/instances/%s/metadata/SopClassUid' % b).strip()) |
|
272d1229cb49
test reconstruction of tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
95
diff
changeset
|
3156 |
|
272d1229cb49
test reconstruction of tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
95
diff
changeset
|
3157 DoPost(_REMOTE, '/instances/%s/reconstruct' % b, {}) |
|
272d1229cb49
test reconstruction of tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
95
diff
changeset
|
3158 |
|
272d1229cb49
test reconstruction of tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
95
diff
changeset
|
3159 CompareMainDicomTag('hello', a, 'study', 'StudyDescription') |
|
272d1229cb49
test reconstruction of tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
95
diff
changeset
|
3160 CompareMainDicomTag('world', a, 'series', 'SeriesDescription') |
|
272d1229cb49
test reconstruction of tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
95
diff
changeset
|
3161 CompareMainDicomTag('1.2.840.113619.2.176.2025.1499492.7040.1171286242.109', a, '', 'SOPInstanceUID') |
| 102 | 3162 |
| 104 | 3163 def test_httpClient_lua(self): |
| 3164 with open(GetDatabasePath('Lua/HttpClient.lua'), 'r') as f: | |
| 102 | 3165 result = DoPost(_REMOTE, '/tools/execute-script', f.read(), 'application/lua') |
| 3166 | |
| 3167 self.assertIn('OK', result) | |
|
107
fddb35f7289d
test_bitbucket_issue_44
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
104
diff
changeset
|
3168 |
|
fddb35f7289d
test_bitbucket_issue_44
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
104
diff
changeset
|
3169 |
|
fddb35f7289d
test_bitbucket_issue_44
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
104
diff
changeset
|
3170 def test_bitbucket_issue_44(self): |
|
fddb35f7289d
test_bitbucket_issue_44
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
104
diff
changeset
|
3171 # https://bitbucket.org/sjodogne/orthanc/issues/44/bad-interpretation-of-photometric |
|
fddb35f7289d
test_bitbucket_issue_44
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
104
diff
changeset
|
3172 UploadInstance(_REMOTE, 'Issue44/Monochrome1.dcm') |
|
fddb35f7289d
test_bitbucket_issue_44
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
104
diff
changeset
|
3173 UploadInstance(_REMOTE, 'Issue44/Monochrome2.dcm') |
|
fddb35f7289d
test_bitbucket_issue_44
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
104
diff
changeset
|
3174 |
|
fddb35f7289d
test_bitbucket_issue_44
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
104
diff
changeset
|
3175 # dcmcjpeg +ua +eb Monochrome1.dcm Monochrome1-Jpeg.dcm |
|
fddb35f7289d
test_bitbucket_issue_44
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
104
diff
changeset
|
3176 UploadInstance(_REMOTE, 'Issue44/Monochrome1-Jpeg.dcm') |
|
fddb35f7289d
test_bitbucket_issue_44
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
104
diff
changeset
|
3177 |
|
fddb35f7289d
test_bitbucket_issue_44
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
104
diff
changeset
|
3178 # dcmcjpeg +ua Monochrome1.dcm Monochrome1-JpegLS.dcm |
|
fddb35f7289d
test_bitbucket_issue_44
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
104
diff
changeset
|
3179 UploadInstance(_REMOTE, 'Issue44/Monochrome1-JpegLS.dcm') |
|
fddb35f7289d
test_bitbucket_issue_44
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
104
diff
changeset
|
3180 |
|
fddb35f7289d
test_bitbucket_issue_44
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
104
diff
changeset
|
3181 monochrome1 = 'bcdd600a-a6a9c522-5f0a6e84-8657c9f3-b76e59b7' |
|
fddb35f7289d
test_bitbucket_issue_44
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
104
diff
changeset
|
3182 monochrome1_jpeg = '9df82121-208a2da8-0038674a-3d7a773b-b7008cd2' |
|
fddb35f7289d
test_bitbucket_issue_44
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
104
diff
changeset
|
3183 monochrome1_jpegls = '0486d1a2-9165573f-b1976b20-e927b016-6b8d67ab' |
|
fddb35f7289d
test_bitbucket_issue_44
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
104
diff
changeset
|
3184 monochrome2 = 'f00947b7-f61f7164-c93414d1-c6fbda6a-9e92ed20' |
|
fddb35f7289d
test_bitbucket_issue_44
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
104
diff
changeset
|
3185 |
|
fddb35f7289d
test_bitbucket_issue_44
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
104
diff
changeset
|
3186 for i in [ monochrome1, monochrome1_jpeg, monochrome1_jpegls ]: |
|
fddb35f7289d
test_bitbucket_issue_44
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
104
diff
changeset
|
3187 im = GetImage(_REMOTE, '/instances/%s/preview' % i) |
|
fddb35f7289d
test_bitbucket_issue_44
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
104
diff
changeset
|
3188 self.assertEqual("L", im.mode) |
|
fddb35f7289d
test_bitbucket_issue_44
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
104
diff
changeset
|
3189 self.assertEqual(2010, im.size[0]) |
|
fddb35f7289d
test_bitbucket_issue_44
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
104
diff
changeset
|
3190 self.assertEqual(2446, im.size[1]) |
|
fddb35f7289d
test_bitbucket_issue_44
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
104
diff
changeset
|
3191 |
|
fddb35f7289d
test_bitbucket_issue_44
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
104
diff
changeset
|
3192 # This is the chest image, with MONOCHROME1. Raw background is |
|
fddb35f7289d
test_bitbucket_issue_44
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
104
diff
changeset
|
3193 # white (255), should be rendered as black (0) => invert |
|
fddb35f7289d
test_bitbucket_issue_44
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
104
diff
changeset
|
3194 if i == monochrome1_jpeg: |
|
fddb35f7289d
test_bitbucket_issue_44
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
104
diff
changeset
|
3195 # Add some tolerance because of JPEG destructive compression |
|
fddb35f7289d
test_bitbucket_issue_44
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
104
diff
changeset
|
3196 self.assertGreater(10, im.getpixel((0,0))) |
|
fddb35f7289d
test_bitbucket_issue_44
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
104
diff
changeset
|
3197 else: |
|
fddb35f7289d
test_bitbucket_issue_44
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
104
diff
changeset
|
3198 self.assertEqual(0, im.getpixel((0,0))) |
|
fddb35f7289d
test_bitbucket_issue_44
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
104
diff
changeset
|
3199 |
|
fddb35f7289d
test_bitbucket_issue_44
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
104
diff
changeset
|
3200 im = GetImage(_REMOTE, '/instances/%s/preview' % monochrome2) |
|
fddb35f7289d
test_bitbucket_issue_44
Sebastien Jodogne <s.jodogne@gmail.com>
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104
diff
changeset
|
3201 self.assertEqual("L", im.mode) |
|
fddb35f7289d
test_bitbucket_issue_44
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
104
diff
changeset
|
3202 self.assertEqual(1572, im.size[0]) |
|
fddb35f7289d
test_bitbucket_issue_44
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
104
diff
changeset
|
3203 self.assertEqual(2010, im.size[1]) |
|
fddb35f7289d
test_bitbucket_issue_44
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
104
diff
changeset
|
3204 |
|
fddb35f7289d
test_bitbucket_issue_44
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
104
diff
changeset
|
3205 # This is the key image, with MONOCHROME2. Raw background is |
|
fddb35f7289d
test_bitbucket_issue_44
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
104
diff
changeset
|
3206 # white (255), should be rendered as white (255) |
|
fddb35f7289d
test_bitbucket_issue_44
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
104
diff
changeset
|
3207 self.assertEqual(255, im.getpixel((0,0))) |
|
111
7005cdeeb704
test_bitbucket_issue_42
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
107
diff
changeset
|
3208 |
|
7005cdeeb704
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Sebastien Jodogne <s.jodogne@gmail.com>
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107
diff
changeset
|
3209 |
|
7005cdeeb704
test_bitbucket_issue_42
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
107
diff
changeset
|
3210 def test_bitbucket_issue_42(self): |
|
7005cdeeb704
test_bitbucket_issue_42
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107
diff
changeset
|
3211 # https://bitbucket.org/sjodogne/orthanc/issues/42/fails-to-modify-a-dicom-video-file |
| 123 | 3212 # This test fails on DCMTK 3.6.0, but succeeds in DCMTK 3.6.1 snapshots and DCMTK 3.6.2 |
|
111
7005cdeeb704
test_bitbucket_issue_42
Sebastien Jodogne <s.jodogne@gmail.com>
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107
diff
changeset
|
3213 UploadInstance(_REMOTE, 'Issue42.dcm')['ID'] |
|
7005cdeeb704
test_bitbucket_issue_42
Sebastien Jodogne <s.jodogne@gmail.com>
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107
diff
changeset
|
3214 modified = DoPost(_REMOTE, |
|
7005cdeeb704
test_bitbucket_issue_42
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
107
diff
changeset
|
3215 '/patients/da128605-e040d0c4-310615d2-3475da63-df2d1ef4/modify', |
| 119 | 3216 '{"Replace":{"PatientID":"Hello","PatientName":"Sample patient name"},"Force":true}', |
|
111
7005cdeeb704
test_bitbucket_issue_42
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parents:
107
diff
changeset
|
3217 'application/json') |
|
7005cdeeb704
test_bitbucket_issue_42
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
107
diff
changeset
|
3218 self.assertTrue('PatientID' in modified) |
|
113
3e5934363e76
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Sebastien Jodogne <s.jodogne@gmail.com>
parents:
112
diff
changeset
|
3219 |
|
3e5934363e76
test_rest_find_limitµ
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
112
diff
changeset
|
3220 |
|
3e5934363e76
test_rest_find_limitµ
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
112
diff
changeset
|
3221 def test_rest_find_limit(self): |
|
3e5934363e76
test_rest_find_limitµ
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parents:
112
diff
changeset
|
3222 # Check the "Since" and "Limit" parameters in URI "/tools/find" |
|
3e5934363e76
test_rest_find_limitµ
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parents:
112
diff
changeset
|
3223 # Related to issue 53: https://bitbucket.org/sjodogne/orthanc/issues/53 |
|
111
7005cdeeb704
test_bitbucket_issue_42
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107
diff
changeset
|
3224 |
|
113
3e5934363e76
test_rest_find_limitµ
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112
diff
changeset
|
3225 # Upload 6 instances |
|
3e5934363e76
test_rest_find_limitµ
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112
diff
changeset
|
3226 brainix = [] |
|
3e5934363e76
test_rest_find_limitµ
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112
diff
changeset
|
3227 knee = [] |
|
3e5934363e76
test_rest_find_limitµ
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
112
diff
changeset
|
3228 for i in range(2): |
|
3e5934363e76
test_rest_find_limitµ
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
112
diff
changeset
|
3229 brainix.append(UploadInstance(_REMOTE, 'Brainix/Flair/IM-0001-000%d.dcm' % (i + 1)) ['ID']) |
|
3e5934363e76
test_rest_find_limitµ
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parents:
112
diff
changeset
|
3230 brainix.append(UploadInstance(_REMOTE, 'Brainix/Epi/IM-0001-000%d.dcm' % (i + 1)) ['ID']) |
|
3e5934363e76
test_rest_find_limitµ
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
112
diff
changeset
|
3231 knee.append(UploadInstance(_REMOTE, 'Knee/T1/IM-0001-000%d.dcm' % (i + 1)) ['ID']) |
|
3e5934363e76
test_rest_find_limitµ
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
112
diff
changeset
|
3232 |
|
3e5934363e76
test_rest_find_limitµ
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parents:
112
diff
changeset
|
3233 # Check using BRAINIX |
|
3e5934363e76
test_rest_find_limitµ
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parents:
112
diff
changeset
|
3234 a = DoPost(_REMOTE, '/tools/find', { 'Level' : 'Instance', |
|
3e5934363e76
test_rest_find_limitµ
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
112
diff
changeset
|
3235 'Query' : { 'PatientName' : 'B*' }, |
|
3e5934363e76
test_rest_find_limitµ
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
112
diff
changeset
|
3236 'Limit' : 10 }) |
|
3e5934363e76
test_rest_find_limitµ
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
112
diff
changeset
|
3237 self.assertEqual(4, len(a)) |
|
3e5934363e76
test_rest_find_limitµ
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
112
diff
changeset
|
3238 |
|
3e5934363e76
test_rest_find_limitµ
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
112
diff
changeset
|
3239 a = DoPost(_REMOTE, '/tools/find', { 'Level' : 'Instance', |
|
3e5934363e76
test_rest_find_limitµ
Sebastien Jodogne <s.jodogne@gmail.com>
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112
diff
changeset
|
3240 'Query' : { 'PatientName' : 'B*' }, |
|
3e5934363e76
test_rest_find_limitµ
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
112
diff
changeset
|
3241 'Limit' : 4 }) |
|
3e5934363e76
test_rest_find_limitµ
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
112
diff
changeset
|
3242 self.assertEqual(4, len(a)) |
|
3e5934363e76
test_rest_find_limitµ
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
112
diff
changeset
|
3243 |
|
3e5934363e76
test_rest_find_limitµ
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
112
diff
changeset
|
3244 a = DoPost(_REMOTE, '/tools/find', { 'Level' : 'Instance', |
|
3e5934363e76
test_rest_find_limitµ
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
112
diff
changeset
|
3245 'Query' : { 'PatientName' : 'B*' }, |
|
3e5934363e76
test_rest_find_limitµ
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
112
diff
changeset
|
3246 'Since' : 2, |
|
3e5934363e76
test_rest_find_limitµ
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
112
diff
changeset
|
3247 'Limit' : 4 }) |
|
3e5934363e76
test_rest_find_limitµ
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
112
diff
changeset
|
3248 self.assertEqual(2, len(a)) |
|
3e5934363e76
test_rest_find_limitµ
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
112
diff
changeset
|
3249 |
|
3e5934363e76
test_rest_find_limitµ
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
112
diff
changeset
|
3250 a = DoPost(_REMOTE, '/tools/find', { 'Level' : 'Instance', |
|
3e5934363e76
test_rest_find_limitµ
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
112
diff
changeset
|
3251 'Query' : { 'PatientName' : 'B*' }, |
|
3e5934363e76
test_rest_find_limitµ
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
112
diff
changeset
|
3252 'Limit' : 3 }) |
|
3e5934363e76
test_rest_find_limitµ
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
112
diff
changeset
|
3253 self.assertEqual(3, len(a)) |
|
3e5934363e76
test_rest_find_limitµ
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
112
diff
changeset
|
3254 |
|
3e5934363e76
test_rest_find_limitµ
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
112
diff
changeset
|
3255 b = [] |
|
3e5934363e76
test_rest_find_limitµ
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
112
diff
changeset
|
3256 for i in range(4): |
|
3e5934363e76
test_rest_find_limitµ
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
112
diff
changeset
|
3257 a = DoPost(_REMOTE, '/tools/find', { 'Level' : 'Instance', |
|
3e5934363e76
test_rest_find_limitµ
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
112
diff
changeset
|
3258 'Query' : { 'PatientName' : 'B*' }, |
|
3e5934363e76
test_rest_find_limitµ
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
112
diff
changeset
|
3259 'Limit' : 1, |
|
3e5934363e76
test_rest_find_limitµ
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
112
diff
changeset
|
3260 'Since' : i }) |
|
3e5934363e76
test_rest_find_limitµ
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
112
diff
changeset
|
3261 self.assertEqual(1, len(a)) |
|
3e5934363e76
test_rest_find_limitµ
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
112
diff
changeset
|
3262 b.append(a[0]) |
|
3e5934363e76
test_rest_find_limitµ
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
112
diff
changeset
|
3263 |
|
3e5934363e76
test_rest_find_limitµ
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
112
diff
changeset
|
3264 # Check whether the two sets are equal through symmetric difference |
|
3e5934363e76
test_rest_find_limitµ
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
112
diff
changeset
|
3265 self.assertEqual(0, len(set(b) ^ set(brainix))) |
|
3e5934363e76
test_rest_find_limitµ
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
112
diff
changeset
|
3266 |
|
3e5934363e76
test_rest_find_limitµ
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
112
diff
changeset
|
3267 # Check using KNEE |
|
3e5934363e76
test_rest_find_limitµ
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
112
diff
changeset
|
3268 a = DoPost(_REMOTE, '/tools/find', { 'Level' : 'Instance', |
|
3e5934363e76
test_rest_find_limitµ
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
112
diff
changeset
|
3269 'Query' : { 'PatientName' : 'K*' }, |
|
3e5934363e76
test_rest_find_limitµ
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
112
diff
changeset
|
3270 'Limit' : 10 }) |
|
3e5934363e76
test_rest_find_limitµ
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
112
diff
changeset
|
3271 self.assertEqual(2, len(a)) |
|
3e5934363e76
test_rest_find_limitµ
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
112
diff
changeset
|
3272 |
|
3e5934363e76
test_rest_find_limitµ
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
112
diff
changeset
|
3273 a = DoPost(_REMOTE, '/tools/find', { 'Level' : 'Instance', |
|
3e5934363e76
test_rest_find_limitµ
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
112
diff
changeset
|
3274 'Query' : { 'PatientName' : 'K*' }, |
|
3e5934363e76
test_rest_find_limitµ
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
112
diff
changeset
|
3275 'Limit' : 2 }) |
|
3e5934363e76
test_rest_find_limitµ
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
112
diff
changeset
|
3276 self.assertEqual(2, len(a)) |
|
3e5934363e76
test_rest_find_limitµ
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
112
diff
changeset
|
3277 |
|
3e5934363e76
test_rest_find_limitµ
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
112
diff
changeset
|
3278 b = [] |
|
3e5934363e76
test_rest_find_limitµ
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
112
diff
changeset
|
3279 for i in range(2): |
|
3e5934363e76
test_rest_find_limitµ
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
112
diff
changeset
|
3280 a = DoPost(_REMOTE, '/tools/find', { 'Level' : 'Instance', |
|
3e5934363e76
test_rest_find_limitµ
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
112
diff
changeset
|
3281 'Query' : { 'PatientName' : 'K*' }, |
|
3e5934363e76
test_rest_find_limitµ
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
112
diff
changeset
|
3282 'Limit' : 1, |
|
3e5934363e76
test_rest_find_limitµ
Sebastien Jodogne <s.jodogne@gmail.com>
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112
diff
changeset
|
3283 'Since' : i }) |
|
3e5934363e76
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112
diff
changeset
|
3284 self.assertEqual(1, len(a)) |
|
3e5934363e76
test_rest_find_limitµ
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
112
diff
changeset
|
3285 b.append(a[0]) |
|
3e5934363e76
test_rest_find_limitµ
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
112
diff
changeset
|
3286 |
|
3e5934363e76
test_rest_find_limitµ
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
112
diff
changeset
|
3287 self.assertEqual(0, len(set(b) ^ set(knee))) |
|
115
45ebfab035b7
test_bitbucket_issue_46
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parents:
113
diff
changeset
|
3288 |
|
45ebfab035b7
test_bitbucket_issue_46
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
113
diff
changeset
|
3289 |
|
45ebfab035b7
test_bitbucket_issue_46
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113
diff
changeset
|
3290 def test_bitbucket_issue_46(self): |
|
45ebfab035b7
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|
3291 # "PHI remaining after anonymization" |
|
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diff
changeset
|
3292 # https://bitbucket.org/sjodogne/orthanc/issues/46 |
|
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diff
changeset
|
3293 |
|
45ebfab035b7
test_bitbucket_issue_46
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diff
changeset
|
3294 def GetAnonymizedTags(study, version): |
|
45ebfab035b7
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changeset
|
3295 anonymized = DoPost(_REMOTE, '/studies/%s/anonymize' % study, |
|
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changeset
|
3296 { 'DicomVersion' : version }, |
|
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changeset
|
3297 'application/json') ['ID'] |
|
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diff
changeset
|
3298 a = DoGet(_REMOTE, '/studies/%s/instances' % anonymized) |
|
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changeset
|
3299 self.assertEqual(1, len(a)) |
|
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diff
changeset
|
3300 |
|
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changeset
|
3301 instance = a[0]['ID'] |
|
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|
3302 |
|
45ebfab035b7
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changeset
|
3303 return (instance, DoGet(_REMOTE, '/instances/%s/tags' % instance)) |
|
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changeset
|
3304 |
|
45ebfab035b7
test_bitbucket_issue_46
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diff
changeset
|
3305 UploadInstance(_REMOTE, 'Issue44/Monochrome1.dcm') |
|
45ebfab035b7
test_bitbucket_issue_46
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diff
changeset
|
3306 origStudy = '6068a14b-d4df27af-9ec22145-538772d8-74f228ff' |
|
45ebfab035b7
test_bitbucket_issue_46
Sebastien Jodogne <s.jodogne@gmail.com>
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diff
changeset
|
3307 |
|
45ebfab035b7
test_bitbucket_issue_46
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diff
changeset
|
3308 # Add the 0032,1033 (Requesting Service) and the 0010,1060 |
|
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changeset
|
3309 # (Patient's Mother's Birth Name) tags |
|
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diff
changeset
|
3310 newStudy = DoPost(_REMOTE, '/studies/%s/modify' % origStudy, |
|
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diff
changeset
|
3311 '{"Replace":{"0010,1060":"OSIMIS","0032,1033":"MOTHER"}}', |
|
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test_bitbucket_issue_46
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diff
changeset
|
3312 'application/json')['ID'] |
|
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diff
changeset
|
3313 |
|
45ebfab035b7
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diff
changeset
|
3314 # Use Table E.1-1 from PS 3.15-2008 |
|
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changeset
|
3315 # https://raw.githubusercontent.com/jodogne/dicom-specification/master/2008/08_15pu.pdf |
|
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3316 (instance, tags) = GetAnonymizedTags(newStudy, "2008") |
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3317 self.assertTrue('0032,1033' in tags) |
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|
3318 self.assertTrue('0010,1060' in tags) |
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3319 |
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3320 # Use Table E.1-1 from PS 3.15-2011 (only if Orthanc >= 1.2.1) |
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3321 # https://raw.githubusercontent.com/jodogne/dicom-specification/master/2008/08_15pu.pdf |
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3322 (instance, tags) = GetAnonymizedTags(newStudy, "2017c") |
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3323 self.assertFalse('0032,1033' in tags) |
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|
3324 self.assertFalse('0010,1060' in tags) |
|
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3325 |
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3326 t = {} |
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|
3327 for (key, value) in tags.iteritems(): |
|
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3328 t[value['Name']] = value['Value'] |
|
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3329 |
|
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|
3330 self.assertEqual('', t['StudyDate']) # Type 1 tag => cleared |
|
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|
3331 self.assertEqual('', t['StudyTime']) # Type 1 tag => cleared |
|
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|
3332 self.assertEqual('', t['PatientSex']) # Type 1 tag => cleared |
|
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3333 self.assertFalse('SeriesDate' in t) # Type 3 tag => null |
|
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|
3334 self.assertFalse('SeriesTime' in t) # Type 3 tag => null |
|
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3335 |
|
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3336 with tempfile.NamedTemporaryFile(delete = True) as f: |
|
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3337 # Run "dciodvfy" on the anonymized file to be sure it is still valid |
|
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3338 f.write(DoGet(_REMOTE, '/instances/%s/file' % instance)) |
|
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3339 f.flush() |
|
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3340 subprocess.check_output([ FindExecutable('dciodvfy'), f.name ], |
|
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|
3341 stderr = subprocess.STDOUT).split('\n') |
|
118
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|
3342 |
|
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|
3343 |
|
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|
3344 def test_bitbucket_issue_55(self): |
|
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3345 def Run(modify, query): |
|
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3346 self.assertEqual(1, len(DoGet(_REMOTE, '/instances'))) |
|
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3347 |
|
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3348 operation = 'modify' if modify else 'anonymize' |
|
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3349 |
|
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3350 self.assertRaises(Exception, lambda: DoPost( |
|
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3351 _REMOTE, '/studies/%s/%s' % (study, operation), query)) |
|
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3352 self.assertEqual(1, len(DoGet(_REMOTE, '/instances'))) |
|
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3353 |
|
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3354 query["Force"] = True |
|
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3355 a = DoPost(_REMOTE, '/studies/%s/%s' % (study, operation), query)['Path'] |
|
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3356 self.assertEqual(2, len(DoGet(_REMOTE, '/instances'))) |
|
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3357 DoDelete(_REMOTE, a) |
|
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3358 |
|
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3359 self.assertEqual(1, len(DoGet(_REMOTE, '/instances'))) |
|
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|
3360 |
|
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|
3361 UploadInstance(_REMOTE, 'DummyCT.dcm') |
|
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3362 study = 'b9c08539-26f93bde-c81ab0d7-bffaf2cb-a4d0bdd0' |
|
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3363 |
|
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|
3364 Run(True, { "Replace" : { "StudyInstanceUID" : "world" } }) |
|
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|
3365 Run(True, { "Replace" : { "SeriesInstanceUID" : "world" } }) |
|
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3366 Run(True, { "Replace" : { "SOPInstanceUID" : "world" } }) |
|
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|
3367 |
|
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|
3368 Run(False, { "Keep" : [ "StudyInstanceUID" ]}) |
|
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3369 Run(False, { "Keep" : [ "SeriesInstanceUID" ]}) |
|
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|
3370 Run(False, { "Keep" : [ "SOPInstanceUID" ]}) |
|
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|
3371 |
|
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|
3372 Run(False, { "Replace" : { "StudyInstanceUID" : "world" } }) |
|
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|
3373 Run(False, { "Replace" : { "SeriesInstanceUID" : "world" } }) |
|
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|
3374 Run(False, { "Replace" : { "SOPInstanceUID" : "world" } }) |
|
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3375 |
|
120
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|
3376 |
|
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|
3377 def test_bitbucket_issue_56(self): |
|
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|
3378 # Case-insensitive matching over accents. This test assumes |
|
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|
3379 # that the "CaseSensitivePN" configuration option of Orthanc |
|
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|
3380 # is set to "false" (default value). |
|
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|
3381 # https://bitbucket.org/sjodogne/orthanc/issues/56 |
|
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|
3382 |
|
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|
3383 def Check(name, expected, expectedSensitive): |
|
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|
3384 a = CallFindScu([ '-k', '0008,0005=ISO_IR 192', # Use UTF-8 |
|
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|
3385 '-k', '0008,0052=PATIENT', |
|
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|
3386 '-k', 'PatientName=%s' % name ]) |
|
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|
3387 patientNames = re.findall('\(0010,0010\).*?\[(.*?)\]', a) |
|
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|
3388 self.assertEqual(expected, len(patientNames)) |
|
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|
3389 |
|
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diff
changeset
|
3390 a = DoPost(_REMOTE, '/tools/find', { 'Level' : 'Patient', |
|
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|
3391 'CaseSensitive' : False, |
|
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|
3392 'Query' : { 'PatientName' : name }}) |
|
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|
3393 self.assertEqual(expected, len(a)) |
|
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|
3394 |
|
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|
3395 a = DoPost(_REMOTE, '/tools/find', { 'Level' : 'Patient', |
|
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|
3396 'CaseSensitive' : True, |
|
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|
3397 'Query' : { 'PatientName' : name }}) |
|
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|
3398 self.assertEqual(expectedSensitive, len(a)) |
|
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|
3399 |
|
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|
3400 UploadInstance(_REMOTE, 'Encodings/Lena-latin1.dcm') |
|
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|
3401 |
|
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|
3402 # WildcardConstraint |
|
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|
3403 Check('TeSt*', 1, 0) |
|
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|
3404 Check('TeSt-a*', 0, 0) |
|
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|
3405 Check('TeSt-É*', 1, 0) |
|
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|
3406 Check('TeSt-é*', 1, 0) |
|
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|
3407 Check('Test-é*', 1, 1) |
|
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|
3408 |
|
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|
3409 # ListConstraint |
|
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|
3410 Check('Test-éüäöò\\nope', 1, 1) |
|
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|
3411 Check('Test-ÉÜÄÖÒ\\nope', 1, 0) |
|
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|
3412 |
|
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|
3413 # ValueConstraint |
|
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|
3414 Check('Test-éüäöò', 1, 1) |
|
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|
3415 Check('Test-ÉÜÄÖÒ', 1, 0) |
|
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|
3416 |
| 125 | 3417 |
| 3418 def test_gbk_alias(self): | |
| 3419 # https://groups.google.com/d/msg/orthanc-users/WMM8LMbjpUc/02-1f_yFCgAJ | |
| 3420 # This test fails on Orthanc <= 1.3.0 | |
| 3421 i = UploadInstance(_REMOTE, '2017-09-19-GBK-Tumashu.dcm')['ID'] | |
| 3422 tags = DoGet(_REMOTE, '/instances/%s/tags?simplify' % i) | |
| 3423 self.assertEqual(tags['PatientName'], u'徐浩凯') | |
| 3424 self.assertEqual(tags['InstitutionName'], u'灌云县疾病预防控制中心') | |
| 126 | 3425 |
| 3426 | |
| 3427 def test_long_tag(self): | |
| 3428 i = UploadInstance(_REMOTE, 'DummyCTWithLongTag.dcm')['ID'] | |
| 3429 series = 'f2635388-f01d497a-15f7c06b-ad7dba06-c4c599fe' | |
| 3430 | |
| 3431 tags = DoGet(_REMOTE, '/instances/%s/tags' % i) | |
| 3432 self.assertTrue('0018,1020' in tags) | |
| 3433 self.assertEqual('SoftwareVersions', tags['0018,1020']['Name']) | |
| 3434 self.assertEqual('TooLong', tags['0018,1020']['Type']) | |
| 3435 self.assertEqual(None, tags['0018,1020']['Value']) | |
| 3436 | |
| 3437 tags = DoGet(_REMOTE, '/instances/%s/tags?ignore-length=0018-1020' % i) | |
| 3438 self.assertTrue('0018,1020' in tags) | |
| 3439 self.assertEqual('SoftwareVersions', tags['0018,1020']['Name']) | |
| 3440 self.assertEqual('String', tags['0018,1020']['Type']) | |
| 3441 self.assertTrue(tags['0018,1020']['Value'].startswith('Lorem ipsum dolor sit amet')) | |
| 3442 | |
| 3443 tags = DoGet(_REMOTE, '/instances/%s/tags?simplify' % i) | |
| 3444 self.assertTrue('SoftwareVersions' in tags) | |
| 3445 self.assertEqual(None, tags['SoftwareVersions']) | |
| 3446 self.assertTrue('HeartRate' in tags) | |
| 3447 self.assertEqual(474, int(tags['HeartRate'])) | |
| 3448 | |
| 3449 tags = DoGet(_REMOTE, '/instances/%s/simplified-tags' % i) | |
| 3450 self.assertTrue('SoftwareVersions' in tags) | |
| 3451 self.assertEqual(None, tags['SoftwareVersions']) | |
| 3452 | |
| 3453 tags = DoGet(_REMOTE, '/instances/%s/tags?simplify&ignore-length=0018-1020' % i) | |
| 3454 self.assertTrue('SoftwareVersions' in tags) | |
| 3455 self.assertTrue(tags['SoftwareVersions'].startswith('Lorem ipsum dolor sit amet')) | |
| 3456 | |
| 3457 tags = DoGet(_REMOTE, '/instances/%s/tags?simplify&ignore-length=SoftwareVersions' % i) | |
| 3458 self.assertTrue('SoftwareVersions' in tags) | |
| 3459 self.assertTrue(tags['SoftwareVersions'].startswith('Lorem ipsum dolor sit amet')) | |
| 3460 | |
| 3461 tags = DoGet(_REMOTE, '/series/%s/instances-tags' % series) | |
| 3462 self.assertEqual(1, len(tags)) | |
| 3463 self.assertTrue(i in tags.keys()) | |
| 3464 self.assertTrue('0018,1020' in tags[i]) | |
| 3465 self.assertEqual('TooLong', tags[i]['0018,1020']['Type']) | |
| 3466 | |
| 3467 tags = DoGet(_REMOTE, '/series/%s/instances-tags?ignore-length=SoftwareVersions' % series) | |
| 3468 self.assertEqual(1, len(tags)) | |
| 3469 self.assertTrue(i in tags.keys()) | |
| 3470 self.assertTrue('0018,1020' in tags[i]) | |
| 3471 self.assertEqual('String', tags[i]['0018,1020']['Type']) | |
| 3472 self.assertTrue(tags[i]['0018,1020']['Value'].startswith('Lorem ipsum dolor sit amet')) | |
| 3473 | |
|
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|
3474 |
|
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diff
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|
3475 def test_extended_media(self): |
|
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|
3476 UploadInstance(_REMOTE, 'Knee/T1/IM-0001-0001.dcm') |
|
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|
3477 |
|
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diff
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|
3478 z = GetArchive(_REMOTE, '/patients/%s/media?extended' % DoGet(_REMOTE, '/patients')[0]) |
|
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|
3479 self.assertEqual(2, len(z.namelist())) |
|
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diff
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|
3480 self.assertTrue('IMAGES/IM0' in z.namelist()) |
|
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diff
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|
3481 self.assertTrue('DICOMDIR' in z.namelist()) |
|
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diff
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|
3482 |
|
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diff
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|
3483 try: |
|
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diff
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|
3484 os.remove('/tmp/DICOMDIR') |
|
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|
3485 except: |
|
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|
3486 # The file does not exist |
|
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diff
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|
3487 pass |
|
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diff
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|
3488 |
|
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diff
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|
3489 z.extract('DICOMDIR', '/tmp') |
|
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|
3490 a = subprocess.check_output([ FindExecutable('dciodvfy'), '/tmp/DICOMDIR' ], |
|
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|
3491 stderr = subprocess.STDOUT).split('\n') |
|
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|
3492 self.assertEqual(5, len(a)) |
|
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|
3493 self.assertTrue(a[0].startswith('Warning')) |
|
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|
3494 self.assertEqual('BasicDirectory', a[1]) |
|
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|
3495 self.assertTrue('not present in standard DICOM IOD' in a[2]) |
|
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diff
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|
3496 self.assertTrue('not present in standard DICOM IOD' in a[3]) |
|
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diff
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|
3497 self.assertEqual('', a[4]) |
|
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|
3498 |
|
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diff
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|
3499 a = subprocess.check_output([ FindExecutable('dcentvfy'), '/tmp/DICOMDIR' ], |
|
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diff
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|
3500 stderr = subprocess.STDOUT).split('\n') |
|
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diff
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|
3501 self.assertEqual(1, len(a)) |
|
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|
3502 self.assertEqual('', a[0]) |
|
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|
3503 |
|
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diff
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|
3504 a = subprocess.check_output([ FindExecutable('dcm2xml'), '/tmp/DICOMDIR' ]) |
|
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diff
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|
3505 self.assertTrue(re.search('1.3.46.670589.11.17521.5.0.3124.2008081908590448738', a) != None) |
|
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diff
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|
3506 |
|
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diff
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|
3507 # Check the presence of the series description (extended tag) |
|
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diff
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|
3508 self.assertTrue(re.search('T1W_aTSE', a) != None) |
|
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|
3509 |
|
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parents:
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diff
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|
3510 os.remove('/tmp/DICOMDIR') |
|
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parents:
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diff
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|
3511 |
|
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diff
changeset
|
3512 |