Mercurial > hg > orthanc-tests
annotate Tests/Tests.py @ 219:00e5aeea33dd
test_bitbucket_issue_131
author | Sebastien Jodogne <s.jodogne@gmail.com> |
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date | Sun, 24 Feb 2019 08:50:02 +0100 |
parents | 70fba41776be |
children | 7b1c976caa9b |
rev | line source |
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22 | 1 #!/usr/bin/env python |
2 # -*- coding: utf-8 -*- | |
3 | |
4 | |
3 | 5 # Orthanc - A Lightweight, RESTful DICOM Store |
73 | 6 # Copyright (C) 2012-2016 Sebastien Jodogne, Medical Physics |
3 | 7 # Department, University Hospital of Liege, Belgium |
195 | 8 # Copyright (C) 2017-2019 Osimis S.A., Belgium |
3 | 9 # |
10 # This program is free software: you can redistribute it and/or | |
11 # modify it under the terms of the GNU General Public License as | |
12 # published by the Free Software Foundation, either version 3 of the | |
13 # License, or (at your option) any later version. | |
14 # | |
15 # This program is distributed in the hope that it will be useful, but | |
16 # WITHOUT ANY WARRANTY; without even the implied warranty of | |
17 # MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU | |
18 # General Public License for more details. | |
19 # | |
20 # You should have received a copy of the GNU General Public License | |
21 # along with this program. If not, see <http://www.gnu.org/licenses/>. | |
22 | |
23 | |
202
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24 import base64 |
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25 import copy |
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26 import pprint |
14 | 27 import tempfile |
3 | 28 import unittest |
29 | |
11 | 30 from PIL import ImageChops |
3 | 31 from Toolbox import * |
13 | 32 from xml.dom import minidom |
3 | 33 |
34 _LOCAL = None | |
35 _REMOTE = None | |
36 | |
37 | |
38 def SetOrthancParameters(local, remote): | |
39 global _LOCAL, _REMOTE | |
40 _LOCAL = local | |
41 _REMOTE = remote | |
42 | |
43 | |
14 | 44 def ExtractDicomTags(rawDicom, tags): |
45 with tempfile.NamedTemporaryFile(delete = True) as f: | |
46 f.write(rawDicom) | |
47 f.flush() | |
45 | 48 data = subprocess.check_output([ FindExecutable('dcm2xml'), f.name ]) |
14 | 49 |
50 result = [] | |
51 for tag in tags: | |
52 match = re.search('<element[^>]+name="%s">([^>]*)</element>' % tag, data) | |
53 if match == None: | |
54 result.append('') | |
55 else: | |
56 result.append(match.group(1)) | |
57 | |
58 return result | |
59 | |
60 | |
21
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61 def CompareLists(a, b): |
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62 if len(a) != len(b): |
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63 return False |
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64 |
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65 for i in range(len(a)): |
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66 d = a[i] - b[i] |
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67 if abs(d) >= 0.51: # Add some tolerance for rounding errors |
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68 return False |
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69 |
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70 return True |
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71 |
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72 |
80
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73 def CompareTags(a, b, tagsToIgnore): |
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74 for i in tagsToIgnore: |
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75 if i in a: |
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76 del a[i] |
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77 if i in b: |
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78 del b[i] |
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79 |
123 | 80 if a.keys() == b.keys(): |
81 return True | |
82 else: | |
83 print('Mismatch in tags: %s' % str(set(a.keys()) ^ set(b.keys()))) | |
84 return False | |
80
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85 |
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86 |
71
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87 def CallFindScu(args): |
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88 p = subprocess.Popen([ FindExecutable('findscu'), |
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89 '-P', '-aec', _REMOTE['DicomAet'], '-aet', _LOCAL['DicomAet'], |
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90 _REMOTE['Server'], str(_REMOTE['DicomPort']) ] + args, |
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91 stderr=subprocess.PIPE) |
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92 return p.communicate()[1] |
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93 |
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94 |
142 | 95 def GetMoveScuCommand(): |
96 return [ | |
97 FindExecutable('movescu'), | |
98 '--move', _LOCAL['DicomAet'], # Target AET (i.e. storescp) | |
99 '--call', _REMOTE['DicomAet'], # Called AET (i.e. Orthanc) | |
100 '--aetitle', _LOCAL['DicomAet'], # Calling AET (i.e. storescp) | |
101 _REMOTE['Server'], | |
102 str(_REMOTE['DicomPort']) | |
103 ] | |
104 | |
54
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105 def CallMoveScu(args): |
142 | 106 subprocess.check_call(GetMoveScuCommand() + args, |
54
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107 stderr=subprocess.PIPE) |
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108 |
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109 |
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110 |
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111 def GenerateTestSequence(): |
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112 return [ |
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113 { |
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114 'StudyDescription': 'Hello^', |
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115 'ReferencedStudySequence' : [ |
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116 { |
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117 'StudyDescription': 'Toto', |
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118 }, |
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119 { |
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120 'StudyDescription': 'Tata', |
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121 }, |
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122 ] |
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123 }, |
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124 { |
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125 'StudyDescription': 'Sébastien^', |
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126 'StudyDate' : '19700202', |
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127 } |
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128 ] |
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129 |
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130 |
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131 |
15 | 132 |
3 | 133 class Orthanc(unittest.TestCase): |
134 def setUp(self): | |
83 | 135 if (sys.version_info >= (3, 0)): |
136 # Remove annoying warnings about unclosed socket in Python 3 | |
137 import warnings | |
138 warnings.simplefilter("ignore", ResourceWarning) | |
139 | |
3 | 140 DropOrthanc(_LOCAL) |
141 DropOrthanc(_REMOTE) | |
174 | 142 UninstallLuaCallbacks(_REMOTE) |
45 | 143 #print "In test", self._testMethodName |
44
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144 |
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145 def AssertSameImages(self, truth, url): |
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146 im = GetImage(_REMOTE, url) |
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147 self.assertTrue(CompareLists(truth, im.getdata())) |
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148 |
3 | 149 |
150 def test_system(self): | |
177 | 151 self.assertTrue('Version' in DoGet(_REMOTE, '/system')) |
152 self.assertEqual('0', DoGet(_REMOTE, '/statistics')['TotalDiskSize']) | |
153 self.assertEqual('0', DoGet(_REMOTE, '/statistics')['TotalUncompressedSize']) | |
154 | |
155 systemInfo = DoGet(_REMOTE, '/system') | |
156 if systemInfo["Version"] == "mainline": | |
157 print "Skipping version checks since you're currently in mainline" | |
158 return | |
159 | |
173 | 160 self.assertTrue(IsOrthancVersionAbove(_LOCAL, 0, 8, 6)) |
161 self.assertFalse(IsOrthancVersionAbove(_LOCAL, 0, 8, 7)) | |
162 self.assertTrue(IsOrthancVersionAbove(_LOCAL, 0, 7, 6)) | |
163 self.assertFalse(IsOrthancVersionAbove(_LOCAL, 0, 9, 6)) | |
164 self.assertFalse(IsOrthancVersionAbove(_LOCAL, 1, 8, 6)) | |
3 | 165 |
166 def test_upload(self): | |
173 | 167 self.assertEqual('0', DoGet(_REMOTE, '/statistics')['TotalDiskSize']) |
168 self.assertEqual('0', DoGet(_REMOTE, '/statistics')['TotalUncompressedSize']) | |
169 | |
170 sizeDummyCT = 2472 | |
171 sizeOverwrite = 2476 | |
172 instance = '66a662ce-7430e543-bad44d47-0dc5a943-ec7a538d' | |
173 | |
3 | 174 u = UploadInstance(_REMOTE, 'DummyCT.dcm') |
183 | 175 self.assertEqual(instance, u['ID']) |
3 | 176 self.assertEqual('Success', u['Status']) |
173 | 177 |
183 | 178 if True: |
179 # New test for Orthanc 1.4.3 | |
180 self.assertEqual('f2635388-f01d497a-15f7c06b-ad7dba06-c4c599fe', u['ParentSeries']) | |
181 self.assertEqual('b9c08539-26f93bde-c81ab0d7-bffaf2cb-a4d0bdd0', u['ParentStudy']) | |
182 self.assertEqual('6816cb19-844d5aee-85245eba-28e841e6-2414fae2', u['ParentPatient']) | |
183 | |
173 | 184 j = int(DoGet(_REMOTE, '/instances/%s/attachments/dicom-as-json/size' % instance)) |
185 s = sizeDummyCT + j | |
186 self.assertEqual('%d' % s, DoGet(_REMOTE, '/statistics')['TotalDiskSize']) | |
187 self.assertEqual('%d' % s, DoGet(_REMOTE, '/statistics')['TotalUncompressedSize']) | |
188 | |
3 | 189 u = UploadInstance(_REMOTE, 'DummyCT.dcm') |
190 self.assertEqual(1, len(DoGet(_REMOTE, '/patients'))) | |
191 self.assertEqual(1, len(DoGet(_REMOTE, '/studies'))) | |
192 self.assertEqual(1, len(DoGet(_REMOTE, '/series'))) | |
193 self.assertEqual(1, len(DoGet(_REMOTE, '/instances'))) | |
173 | 194 self.assertEqual('%d' % s, DoGet(_REMOTE, '/statistics')['TotalDiskSize']) |
195 self.assertEqual('%d' % s, DoGet(_REMOTE, '/statistics')['TotalUncompressedSize']) | |
196 | |
197 i = DoGet(_REMOTE, '/instances/%s/simplified-tags' % instance) | |
3 | 198 self.assertEqual('20070101', i['StudyDate']) |
173 | 199 self.assertEqual('KNIX', i['PatientName']) |
200 | |
201 if IsOrthancVersionAbove(_REMOTE, 1, 4, 2): | |
202 # Overwriting | |
203 self.assertEqual('Success', u['Status']) | |
204 else: | |
205 self.assertEqual('AlreadyStored', u['Status']) | |
206 | |
207 u = UploadInstance(_REMOTE, 'DummyCT-overwrite.dcm') | |
208 self.assertEqual(1, len(DoGet(_REMOTE, '/patients'))) | |
209 self.assertEqual(1, len(DoGet(_REMOTE, '/studies'))) | |
210 self.assertEqual(1, len(DoGet(_REMOTE, '/series'))) | |
211 self.assertEqual(1, len(DoGet(_REMOTE, '/instances'))) | |
212 | |
213 if IsOrthancVersionAbove(_REMOTE, 1, 4, 2): | |
214 # Overwriting | |
215 self.assertEqual('Success', u['Status']) | |
216 j2 = int(DoGet(_REMOTE, '/instances/%s/attachments/dicom-as-json/size' % instance)) | |
217 s2 = sizeOverwrite + j2 | |
218 self.assertNotEqual(s, s2) | |
219 self.assertNotEqual(j, j2) | |
220 self.assertEqual('%d' % s2, DoGet(_REMOTE, '/statistics')['TotalDiskSize']) | |
221 self.assertEqual('%d' % s2, DoGet(_REMOTE, '/statistics')['TotalUncompressedSize']) | |
222 i = DoGet(_REMOTE, '/instances/%s/simplified-tags' % instance) | |
223 self.assertEqual('ANOTHER', i['PatientName']) | |
224 else: | |
225 self.assertEqual('AlreadyStored', u['Status']) | |
226 self.assertEqual('%d' % s, DoGet(_REMOTE, '/statistics')['TotalDiskSize']) | |
227 self.assertEqual('%d' % s, DoGet(_REMOTE, '/statistics')['TotalUncompressedSize']) | |
3 | 228 |
5 | 229 def test_upload_2(self): |
3 | 230 i = UploadInstance(_REMOTE, 'DummyCT.dcm')['ID'] |
231 instance = DoGet(_REMOTE, '/instances/%s' % i) | |
232 self.assertEqual(i, instance['ID']) | |
233 self.assertEqual('1.2.840.113619.2.176.2025.1499492.7040.1171286242.109', | |
234 instance['MainDicomTags']['SOPInstanceUID']) | |
235 | |
236 series = DoGet(_REMOTE, '/series/%s' % instance['ParentSeries']) | |
237 self.assertEqual('1.2.840.113619.2.176.2025.1499492.7391.1171285944.394', | |
238 series['MainDicomTags']['SeriesInstanceUID']) | |
239 | |
240 study = DoGet(_REMOTE, '/studies/%s' % series['ParentStudy']) | |
241 self.assertEqual('1.2.840.113619.2.176.2025.1499492.7391.1171285944.390', | |
242 study['MainDicomTags']['StudyInstanceUID']) | |
243 | |
244 patient = DoGet(_REMOTE, '/patients/%s' % study['ParentPatient']) | |
245 self.assertEqual('ozp00SjY2xG', | |
246 patient['MainDicomTags']['PatientID']) | |
247 | |
248 dicom = DoGet(_REMOTE, '/instances/%s/file' % instance['ID']) | |
249 self.assertEqual(2472, len(dicom)) | |
250 self.assertEqual('3e29b869978b6db4886355a2b1132124', ComputeMD5(dicom)) | |
251 self.assertEqual(1, len(DoGet(_REMOTE, '/instances/%s/frames' % i))) | |
252 self.assertEqual('TWINOW', DoGet(_REMOTE, '/instances/%s/simplified-tags' % i)['StationName']) | |
253 self.assertEqual('TWINOW', DoGet(_REMOTE, '/instances/%s/tags' % i)['0008,1010']['Value']) | |
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254 self.assertEqual('TWINOW', DoGet(_REMOTE, '/instances/%s/tags?simplify' % i)['StationName']) |
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255 self.assertEqual('TWINOW', DoGet(_REMOTE, '/instances/%s/tags?short' % i)['0008,1010']) |
3 | 256 |
257 | |
5 | 258 def test_images(self): |
259 i = UploadInstance(_REMOTE, 'Phenix/IM-0001-0001.dcm')['ID'] | |
260 self.assertEqual(1, len(DoGet(_REMOTE, '/instances/%s/frames' % i))) | |
3 | 261 |
5 | 262 im = GetImage(_REMOTE, '/instances/%s/preview' % i) |
263 self.assertEqual("L", im.mode) | |
264 self.assertEqual(512, im.size[0]) | |
265 self.assertEqual(358, im.size[1]) | |
266 | |
267 im = GetImage(_REMOTE, '/instances/%s/image-uint8' % i) | |
268 self.assertEqual("L", im.mode) | |
269 self.assertEqual(512, im.size[0]) | |
270 self.assertEqual(358, im.size[1]) | |
271 | |
272 im = GetImage(_REMOTE, '/instances/%s/image-uint16' % i) | |
273 self.assertEqual(512, im.size[0]) | |
274 self.assertEqual(358, im.size[1]) | |
275 | |
276 im = GetImage(_REMOTE, '/instances/%s/frames/0/preview' % i) | |
277 self.assertEqual("L", im.mode) | |
278 self.assertEqual(512, im.size[0]) | |
279 self.assertEqual(358, im.size[1]) | |
280 | |
281 im = GetImage(_REMOTE, '/instances/%s/frames/0/image-uint8' % i) | |
282 self.assertEqual("L", im.mode) | |
283 self.assertEqual(512, im.size[0]) | |
284 self.assertEqual(358, im.size[1]) | |
285 | |
286 im = GetImage(_REMOTE, '/instances/%s/frames/0/image-uint16' % i) | |
287 self.assertEqual(512, im.size[0]) | |
288 self.assertEqual(358, im.size[1]) | |
64 | 289 |
290 # This is Little Endian Explicit | |
291 self.assertEqual('1.2.840.10008.1.2.1', DoGet(_REMOTE, '/instances/%s/header?simplify' % i)['TransferSyntaxUID']) | |
292 | |
6 | 293 |
294 def test_hierarchy(self): | |
295 UploadFolder(_REMOTE, 'Brainix/Epi') | |
296 UploadFolder(_REMOTE, 'Brainix/Flair') | |
297 UploadFolder(_REMOTE, 'Knee/T1') | |
298 UploadFolder(_REMOTE, 'Knee/T2') | |
299 | |
300 p = DoGet(_REMOTE, '/patients') | |
301 s = DoGet(_REMOTE, '/studies') | |
302 t = DoGet(_REMOTE, '/series') | |
303 self.assertEqual(2, len(p)) | |
304 self.assertEqual(2, len(s)) | |
305 self.assertEqual(4, len(t)) | |
306 self.assertEqual(94, len(DoGet(_REMOTE, '/instances'))) | |
307 | |
308 brainixPatient = '16738bc3-e47ed42a-43ce044c-a3414a45-cb069bd0' | |
309 brainixStudy = '27f7126f-4f66fb14-03f4081b-f9341db2-53925988' | |
310 brainixEpi = '2ac1316d-3e432022-62eabff2-c59f5475-9b1ac3f8' | |
311 brainixFlair = '1e2c125c-411b8e86-3f4fe68e-a7584dd3-c6da78f0' | |
312 | |
313 kneePatient = 'ca29faea-b6a0e17f-067743a1-8b778011-a48b2a17' | |
314 kneeStudy = '0a9b3153-2512774b-2d9580de-1fc3dcf6-3bd83918' | |
315 kneeT1 = '6de73705-c4e65c1b-9d9ea1b5-cabcd8e7-f15e4285' | |
316 kneeT2 = 'bbf7a453-0d34251a-03663b55-46bb31b9-ffd74c59' | |
317 | |
318 self.assertTrue(brainixPatient in p) | |
319 self.assertTrue(kneePatient in p) | |
320 self.assertTrue(brainixStudy in s) | |
321 self.assertTrue(kneeStudy in s) | |
322 self.assertTrue(brainixEpi in t) | |
323 self.assertTrue(brainixFlair in t) | |
324 self.assertTrue(kneeT1 in t) | |
325 self.assertTrue(kneeT2 in t) | |
326 | |
327 self.assertEqual(44, len(DoGet(_REMOTE, '/patients/%s/instances' % brainixPatient))) | |
328 self.assertEqual(2, len(DoGet(_REMOTE, '/patients/%s/series' % brainixPatient))) | |
329 self.assertEqual(1, len(DoGet(_REMOTE, '/patients/%s/studies' % brainixPatient))) | |
330 | |
331 self.assertEqual(50, len(DoGet(_REMOTE, '/patients/%s/instances' % kneePatient))) | |
332 self.assertEqual(2, len(DoGet(_REMOTE, '/patients/%s/series' % kneePatient))) | |
333 self.assertEqual(1, len(DoGet(_REMOTE, '/patients/%s/studies' % kneePatient))) | |
334 | |
335 self.assertEqual(2, len(DoGet(_REMOTE, '/studies/%s/series' % brainixStudy))) | |
336 self.assertEqual(44, len(DoGet(_REMOTE, '/studies/%s/instances' % brainixStudy))) | |
337 | |
338 self.assertEqual(2, len(DoGet(_REMOTE, '/studies/%s/series' % kneeStudy))) | |
339 self.assertEqual(50, len(DoGet(_REMOTE, '/studies/%s/instances' % kneeStudy))) | |
340 | |
341 self.assertEqual(22, len(DoGet(_REMOTE, '/series/%s/instances' % brainixEpi))) | |
342 self.assertEqual(22, len(DoGet(_REMOTE, '/series/%s/instances' % brainixFlair))) | |
343 self.assertEqual(24, len(DoGet(_REMOTE, '/series/%s/instances' % kneeT1))) | |
344 self.assertEqual(26, len(DoGet(_REMOTE, '/series/%s/instances' % kneeT2))) | |
345 | |
346 for patient in p: | |
347 for study in DoGet(_REMOTE, '/patients/%s/studies' % patient): | |
348 self.assertEqual(patient, study['ParentPatient']) | |
349 for series in DoGet(_REMOTE, '/studies/%s/series' % study['ID']): | |
350 self.assertEqual(study['ID'], series['ParentStudy']) | |
211 | 351 self.assertEqual('Unknown', series['Status']) |
6 | 352 for instance in DoGet(_REMOTE, '/series/%s/instances' % series['ID']): |
353 self.assertEqual(series['ID'], instance['ParentSeries']) | |
354 | |
355 self.assertEqual(json.dumps(DoGet(_REMOTE, '/instances/%s/attachments/dicom-as-json/data' % instance['ID'])), | |
356 json.dumps(DoGet(_REMOTE, '/instances/%s/tags' % instance['ID']))) | |
357 | |
358 | |
359 r = DoDelete(_REMOTE, "/studies/%s" % brainixStudy)['RemainingAncestor'] | |
360 self.assertEqual(1, len(DoGet(_REMOTE, '/patients'))) | |
361 self.assertEqual(1, len(DoGet(_REMOTE, '/studies'))) | |
362 self.assertEqual(2, len(DoGet(_REMOTE, '/series'))) | |
363 self.assertEqual(50, len(DoGet(_REMOTE, '/instances'))) | |
364 self.assertEqual(None, r) | |
365 | |
366 r = DoDelete(_REMOTE, "/series/%s" % kneeT2)['RemainingAncestor'] | |
367 self.assertEqual(1, len(DoGet(_REMOTE, '/patients'))) | |
368 self.assertEqual(1, len(DoGet(_REMOTE, '/studies'))) | |
369 self.assertEqual(1, len(DoGet(_REMOTE, '/series'))) | |
370 self.assertEqual(24, len(DoGet(_REMOTE, '/instances'))) | |
371 self.assertEqual('Study', r['Type']) | |
372 self.assertEqual(kneeStudy, r['ID']) | |
373 | |
374 r = DoDelete(_REMOTE, "/instances/%s" % DoGet(_REMOTE, '/instances')[0])['RemainingAncestor'] | |
375 self.assertEqual(1, len(DoGet(_REMOTE, '/patients'))) | |
376 self.assertEqual(1, len(DoGet(_REMOTE, '/studies'))) | |
377 self.assertEqual(1, len(DoGet(_REMOTE, '/series'))) | |
378 self.assertEqual(23, len(DoGet(_REMOTE, '/instances'))) | |
379 self.assertEqual('Series', r['Type']) | |
380 self.assertEqual(kneeT1, r['ID']) | |
381 | |
382 r = DoDelete(_REMOTE, "/patients/%s" % kneePatient)['RemainingAncestor'] | |
383 self.assertEqual(0, len(DoGet(_REMOTE, '/patients'))) | |
384 self.assertEqual(0, len(DoGet(_REMOTE, '/studies'))) | |
385 self.assertEqual(0, len(DoGet(_REMOTE, '/series'))) | |
386 self.assertEqual(0, len(DoGet(_REMOTE, '/instances'))) | |
387 self.assertEqual(None, r) | |
388 | |
389 DropOrthanc(_REMOTE) | |
390 self.assertEqual('0', DoGet(_REMOTE, '/statistics')['TotalDiskSize']) | |
391 self.assertEqual('0', DoGet(_REMOTE, '/statistics')['TotalUncompressedSize']) | |
7 | 392 |
213
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393 def test_delete_cascade(self): |
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394 # make sure deleting the last instance of a study deletes the series, study and patient |
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395 |
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396 self.assertEqual(0, len(DoGet(_REMOTE, '/instances'))) # make sure orthanc is empty when starting the test |
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397 a = UploadInstance(_REMOTE, 'DummyCT.dcm')['ID'] |
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398 self.assertEqual(1, len(DoGet(_REMOTE, '/instances'))) |
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399 self.assertEqual(1, len(DoGet(_REMOTE, '/series'))) |
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400 self.assertEqual(1, len(DoGet(_REMOTE, '/studies'))) |
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401 self.assertEqual(1, len(DoGet(_REMOTE, '/patients'))) |
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402 |
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403 DoDelete(_REMOTE, '/instances/%s' % a) |
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404 |
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405 self.assertEqual(0, len(DoGet(_REMOTE, '/instances'))) |
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406 self.assertEqual(0, len(DoGet(_REMOTE, '/series'))) |
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407 self.assertEqual(0, len(DoGet(_REMOTE, '/studies'))) |
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408 self.assertEqual(0, len(DoGet(_REMOTE, '/patients'))) |
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409 |
7 | 410 |
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411 def test_multiframe(self): |
7 | 412 i = UploadInstance(_REMOTE, 'Multiframe.dcm')['ID'] |
413 self.assertEqual(76, len(DoGet(_REMOTE, '/instances/%s/frames' % i))) | |
414 | |
415 im = GetImage(_REMOTE, '/instances/%s/frames/0/preview' % i) | |
416 self.assertEqual("L", im.mode) | |
417 self.assertEqual(512, im.size[0]) | |
418 self.assertEqual(512, im.size[1]) | |
419 | |
420 DoGet(_REMOTE, '/instances/%s/frames/0/image-uint8' % i) | |
421 DoGet(_REMOTE, '/instances/%s/frames/0/image-uint16' % i) | |
422 DoGet(_REMOTE, '/instances/%s/frames/75/preview' % i) | |
423 self.assertRaises(Exception, lambda: DoGet(_REMOTE, '/instances/%s/frames/aaa/preview' % i)) | |
424 self.assertRaises(Exception, lambda: DoGet(_REMOTE, '/instances/%s/frames/76/preview' % i)) | |
425 | |
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426 |
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427 def test_changes(self): |
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428 # Check emptiness |
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429 c = DoGet(_REMOTE, '/changes') |
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430 self.assertEqual(0, len(c['Changes'])) |
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431 #self.assertEqual(0, c['Last']) # Not true anymore for Orthanc >= 1.5.2 |
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432 self.assertTrue(c['Done']) |
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433 c = DoGet(_REMOTE, '/changes?last') |
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434 self.assertEqual(0, len(c['Changes'])) |
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435 #self.assertEqual(0, c['Last']) # Not true anymore for Orthanc >= 1.5.2 |
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436 self.assertTrue(c['Done']) |
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437 |
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438 # Add 1 instance |
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439 i = UploadInstance(_REMOTE, 'Brainix/Flair/IM-0001-0001.dcm')['ID'] |
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440 c = DoGet(_REMOTE, '/changes') |
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441 begin = c['Last'] |
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442 self.assertEqual(4, len(c['Changes'])) |
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443 self.assertTrue(c['Done']) |
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444 self.assertEqual(c['Changes'][-1]['Seq'], c['Last']) |
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445 |
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446 c = DoGet(_REMOTE, '/changes?last') |
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447 self.assertEqual(1, len(c['Changes'])) |
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448 self.assertEqual(begin, c['Last']) |
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449 self.assertTrue(c['Done']) |
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450 c = DoGet(_REMOTE, '/changes?limit=1&since=' + str(begin - 1)) |
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451 self.assertEqual(1, len(c['Changes'])) |
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452 self.assertEqual(begin, c['Last']) |
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453 self.assertTrue(c['Done']) |
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454 c = DoGet(_REMOTE, '/changes?limit=1&since=' + str(begin - 2)) |
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455 self.assertEqual(1, len(c['Changes'])) |
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456 self.assertEqual(begin - 1, c['Last']) |
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457 self.assertFalse(c['Done']) |
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458 c = DoGet(_REMOTE, '/changes?limit=1&since=' + str(begin - 3)) |
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459 self.assertEqual(1, len(c['Changes'])) |
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460 self.assertEqual(begin - 2, c['Last']) |
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461 self.assertFalse(c['Done']) |
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462 |
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463 UploadFolder(_REMOTE, 'Knee/T1') |
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464 UploadFolder(_REMOTE, 'Knee/T2') |
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465 since = begin |
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466 countPatients = 0 |
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467 countStudies = 0 |
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468 countSeries = 0 |
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469 countInstances = 0 |
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470 completed = 0 |
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471 while True: |
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472 c = DoGet(_REMOTE, '/changes', { 'since' : since, 'limit' : 3 }) |
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473 since = c['Last'] |
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474 for i in c['Changes']: |
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475 if i['ResourceType'] == 'Instance': |
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476 countInstances += 1 |
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477 if i['ResourceType'] == 'Patient': |
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478 countPatients += 1 |
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479 if i['ResourceType'] == 'Study': |
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480 countStudies += 1 |
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481 if i['ResourceType'] == 'Series': |
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482 countSeries += 1 |
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483 if i['ChangeType'] == 'NewInstance': |
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484 countInstances += 1 |
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485 if i['ChangeType'] == 'NewPatient': |
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486 countPatients += 1 |
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487 if i['ChangeType'] == 'NewStudy': |
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488 countStudies += 1 |
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489 if i['ChangeType'] == 'NewSeries': |
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490 countSeries += 1 |
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491 if i['ChangeType'] == 'CompletedSeries': |
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492 completed += 1 |
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493 self.assertTrue('ID' in i) |
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494 self.assertTrue('Path' in i) |
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495 self.assertTrue('Seq' in i) |
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496 if c['Done']: |
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497 break |
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498 |
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499 self.assertEqual(2 * 50, countInstances) |
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500 self.assertEqual(2 * 1, countPatients) |
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501 self.assertEqual(2 * 1, countStudies) |
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502 self.assertEqual(2 * 2, countSeries) |
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503 self.assertEqual(0, completed) |
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504 |
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505 |
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506 def test_archive(self): |
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507 UploadInstance(_REMOTE, 'Knee/T1/IM-0001-0001.dcm') |
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508 UploadInstance(_REMOTE, 'Knee/T2/IM-0001-0001.dcm') |
192 | 509 knee = 'ca29faea-b6a0e17f-067743a1-8b778011-a48b2a17' |
510 | |
511 z = GetArchive(_REMOTE, '/patients/%s/archive' % knee) | |
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512 self.assertEqual(2, len(z.namelist())) |
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513 |
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514 z = GetArchive(_REMOTE, '/studies/%s/archive' % DoGet(_REMOTE, '/studies')[0]) |
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515 self.assertEqual(2, len(z.namelist())) |
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516 |
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517 z = GetArchive(_REMOTE, '/series/%s/archive' % DoGet(_REMOTE, '/series')[0]) |
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518 self.assertEqual(1, len(z.namelist())) |
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519 |
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520 UploadInstance(_REMOTE, 'Brainix/Flair/IM-0001-0001.dcm') |
192 | 521 brainix = '16738bc3-e47ed42a-43ce044c-a3414a45-cb069bd0' |
522 | |
523 z = GetArchive(_REMOTE, '/patients/%s/archive' % knee) | |
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524 self.assertEqual(2, len(z.namelist())) |
192 | 525 |
526 z = PostArchive(_REMOTE, '/tools/create-archive', { | |
527 'Resources' : [ brainix, knee ] | |
528 }) | |
529 self.assertEqual(3, len(z.namelist())) | |
530 | |
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531 |
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532 def test_media_archive(self): |
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533 UploadInstance(_REMOTE, 'Knee/T1/IM-0001-0001.dcm') |
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534 UploadInstance(_REMOTE, 'Knee/T2/IM-0001-0001.dcm') |
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535 |
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536 z = GetArchive(_REMOTE, '/patients/%s/media' % DoGet(_REMOTE, '/patients')[0]) |
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537 self.assertEqual(3, len(z.namelist())) |
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538 self.assertTrue('IMAGES/IM0' in z.namelist()) |
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539 self.assertTrue('IMAGES/IM1' in z.namelist()) |
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540 self.assertTrue('DICOMDIR' in z.namelist()) |
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541 |
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542 try: |
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543 os.remove('/tmp/DICOMDIR') |
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544 except: |
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545 # The file does not exist |
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546 pass |
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547 |
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548 z.extract('DICOMDIR', '/tmp') |
45 | 549 a = subprocess.check_output([ FindExecutable('dciodvfy'), '/tmp/DICOMDIR' ], |
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550 stderr = subprocess.STDOUT).split('\n') |
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551 self.assertEqual(3, len(a)) |
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552 self.assertTrue(a[0].startswith('Warning')) |
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553 self.assertEqual('BasicDirectory', a[1]) |
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554 self.assertEqual('', a[2]) |
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555 |
45 | 556 a = subprocess.check_output([ FindExecutable('dcentvfy'), '/tmp/DICOMDIR' ], |
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557 stderr = subprocess.STDOUT).split('\n') |
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558 self.assertEqual(1, len(a)) |
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559 self.assertEqual('', a[0]) |
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560 |
45 | 561 a = subprocess.check_output([ FindExecutable('dcm2xml'), '/tmp/DICOMDIR' ]) |
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562 self.assertTrue(re.search('1.3.46.670589.11.17521.5.0.3124.2008081908590448738', a) != None) |
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563 self.assertTrue(re.search('1.3.46.670589.11.17521.5.0.3124.2008081909113806560', a) != None) |
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564 |
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565 os.remove('/tmp/DICOMDIR') |
10 | 566 |
567 | |
568 def test_protection(self): | |
569 UploadInstance(_REMOTE, 'Knee/T1/IM-0001-0001.dcm') | |
570 UploadInstance(_REMOTE, 'Brainix/Flair/IM-0001-0001.dcm') | |
571 self.assertEqual(2, len(DoGet(_REMOTE, '/patients'))) | |
572 a = DoGet(_REMOTE, '/patients')[0] | |
573 b = DoGet(_REMOTE, '/patients')[1] | |
574 self.assertEqual(0, DoGet(_REMOTE, '/patients/%s/protected' % a)) | |
575 DoPut(_REMOTE, '/patients/%s/protected' % a, '0', 'text/plain') | |
576 self.assertEqual(0, DoGet(_REMOTE, '/patients/%s/protected' % a)) | |
577 DoPut(_REMOTE, '/patients/%s/protected' % a, '1', 'text/plain') | |
578 self.assertEqual(1, DoGet(_REMOTE, '/patients/%s/protected' % a)) | |
579 DoPut(_REMOTE, '/patients/%s/protected' % a, '0', 'text/plain') | |
580 self.assertEqual(0, DoGet(_REMOTE, '/patients/%s/protected' % a)) | |
581 | |
582 | |
12 | 583 def test_raw_tags(self): |
10 | 584 i = UploadInstance(_REMOTE, 'PrivateTags.dcm')['ID'] |
585 | |
586 dicom = DoGet(_REMOTE, '/instances/%s/file' % i) | |
587 self.assertEqual('1a7c56cb02d6e742cc9c856a8ac182e3', ComputeMD5(dicom)) | |
588 | |
589 s = '/instances/%s/content/' % i | |
590 | |
591 self.assertEqual('LOGIQBOOK', DoGet(_REMOTE, s + '0008-1010').strip()) | |
592 self.assertRaises(Exception, lambda: DoGet(_REMOTE, s + '0008-1011')) | |
593 | |
594 self.assertEqual('Abdomen', DoGet(_REMOTE, s + '7fe1-1001/0/7fe1-1008/0/7fe1-1057').strip()) | |
595 self.assertEqual('cla_3c', DoGet(_REMOTE, s + '7fe1-1001/0/7fe1-1008/8/7fe1-1057').strip()) | |
596 | |
597 UploadInstance(_REMOTE, 'Brainix/Epi/IM-0001-0001.dcm') | |
598 UploadInstance(_REMOTE, 'Brainix/Flair/IM-0001-0001.dcm') | |
599 UploadInstance(_REMOTE, 'Knee/T1/IM-0001-0001.dcm') | |
600 UploadInstance(_REMOTE, 'Knee/T2/IM-0001-0001.dcm') | |
601 | |
602 for i in DoGet(_REMOTE, '/instances'): | |
603 aid = DoGet(_REMOTE, '/instances/%s' % i)['MainDicomTags']['SOPInstanceUID'] | |
604 self.assertEqual(aid, DoGet(_REMOTE, '/instances/%s/content/0008-0018' % i).replace(chr(0), '')) | |
605 | |
606 | |
607 def test_raw_tags_mdn(self): | |
608 # Bug reported by Cyril Paulus | |
609 i = UploadInstance(_REMOTE, 'PrivateMDNTags.dcm')['ID'] | |
610 self.assertAlmostEqual(0.000027, DoGet(_REMOTE, '/instances/%s/content/7053-1000' % i)) | |
611 | |
612 | |
613 def test_modify_instance(self): | |
614 i = UploadInstance(_REMOTE, 'PrivateTags.dcm')['ID'] | |
615 modified = DoPost(_REMOTE, '/instances/%s/modify' % i, | |
616 json.dumps({ | |
617 "Replace" : { | |
618 "PatientName" : "hello", | |
619 #"PatientID" : "world" | |
620 }, | |
621 "Remove" : [ "StationName" ], | |
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622 "RemovePrivateTags" : True |
10 | 623 }), |
624 'application/json') | |
625 j = DoPost(_REMOTE, '/instances', modified, 'application/dicom')['ID'] | |
626 | |
627 self.assertNotEqual('hello', DoGet(_REMOTE, '/instances/%s/content/0010-0010' % i).strip()) | |
628 #self.assertNotEqual('world', DoGet(_REMOTE, '/instances/%s/content/0010-0020' % i).strip()) | |
83 | 629 self.assertEqual('LOGIQBOOK', DoGet(_REMOTE, '/instances/%s/content/0008-1010' % i).strip()) |
10 | 630 DoGet(_REMOTE, '/instances/%s/content/6003-1010' % i) # Some private tag |
631 | |
632 self.assertEqual('hello', DoGet(_REMOTE, '/instances/%s/content/0010-0010' % j).strip()) | |
633 #self.assertEqual('world', DoGet(_REMOTE, '/instances/%s/content/0010-0020' % j).strip()) | |
634 self.assertRaises(Exception, lambda: DoGet(_REMOTE, '/instances/%s/content/0008-1010' % j)) | |
635 self.assertRaises(Exception, lambda: DoGet(_REMOTE, '/instances/%s/content/6003-1010' % j)) | |
636 | |
637 | |
638 def test_modify_series(self): | |
639 # Upload 4 images from the same series | |
640 for i in range(4): | |
641 UploadInstance(_REMOTE, 'Brainix/Epi/IM-0001-000%d.dcm' % (i + 1)) | |
642 | |
643 origSeries = DoGet(_REMOTE, '/series')[0] | |
644 newSeries = DoPost(_REMOTE, '/series/%s/modify' % origSeries, | |
645 '{"Replace":{"PatientName":"Jodogne"}}', | |
646 'application/json')['ID'] | |
647 | |
648 self.assertEqual(origSeries, DoGet(_REMOTE, '/series/%s' % newSeries)['ModifiedFrom']) | |
649 instances = DoGet(_REMOTE, '/series/%s' % newSeries)['Instances'] | |
650 self.assertEqual(4, len(instances)) | |
651 for i in instances: | |
652 j = DoGet(_REMOTE, '/instances/%s' % i)['ModifiedFrom'] | |
653 self.assertEqual(newSeries, DoGet(_REMOTE, '/instances/%s' % i)['ParentSeries']) | |
654 self.assertEqual(origSeries, DoGet(_REMOTE, '/instances/%s' % j)['ParentSeries']) | |
655 | |
656 self.assertEqual('Jodogne', DoGet(_REMOTE, '/instances/%s/content/0010-0010' % i).strip()) | |
657 self.assertNotEqual('Jodogne', DoGet(_REMOTE, '/instances/%s/content/0010-0010' % j).strip()) | |
658 | |
659 | |
660 def test_modify_study(self): | |
661 # Upload 4 images from the 2 series of the same study | |
662 for i in range(4): | |
663 UploadInstance(_REMOTE, 'Brainix/Flair/IM-0001-000%d.dcm' % (i + 1)) | |
664 UploadInstance(_REMOTE, 'Brainix/Epi/IM-0001-000%d.dcm' % (i + 1)) | |
665 | |
666 origStudy = DoGet(_REMOTE, '/studies')[0] | |
667 newStudy = DoPost(_REMOTE, '/studies/%s/modify' % origStudy, | |
668 '{"Replace":{"PatientName":"Jodogne"}}', | |
669 'application/json')['ID'] | |
670 | |
671 self.assertEqual(origStudy, DoGet(_REMOTE, '/studies/%s' % newStudy)['ModifiedFrom']) | |
672 series = DoGet(_REMOTE, '/studies/%s' % newStudy)['Series'] | |
673 self.assertEqual(2, len(series)) | |
674 for s in series: | |
675 ss = DoGet(_REMOTE, '/series/%s' % s)['ModifiedFrom'] | |
676 self.assertEqual(newStudy, DoGet(_REMOTE, '/series/%s' % s)['ParentStudy']) | |
677 self.assertEqual(origStudy, DoGet(_REMOTE, '/series/%s' % ss)['ParentStudy']) | |
678 | |
679 instances = DoGet(_REMOTE, '/series/%s' % s)['Instances'] | |
680 for i in instances: | |
681 j = DoGet(_REMOTE, '/instances/%s' % i)['ModifiedFrom'] | |
682 self.assertEqual(s, DoGet(_REMOTE, '/instances/%s' % i)['ParentSeries']) | |
683 self.assertEqual(ss, DoGet(_REMOTE, '/instances/%s' % j)['ParentSeries']) | |
684 | |
685 self.assertEqual('Jodogne', DoGet(_REMOTE, '/instances/%s/content/0010-0010' % i).strip()) | |
686 self.assertNotEqual('Jodogne', DoGet(_REMOTE, '/instances/%s/content/0010-0010' % j).strip()) | |
687 | |
688 | |
689 def test_anonymize_series(self): | |
690 # Upload 4 images from the same series | |
691 for i in range(4): | |
692 UploadInstance(_REMOTE, 'Brainix/Epi/IM-0001-000%d.dcm' % (i + 1)) | |
693 | |
694 origSeries = DoGet(_REMOTE, '/series')[0] | |
695 newSeries = DoPost(_REMOTE, '/series/%s/anonymize' % origSeries, | |
696 '{}', | |
697 'application/json')['ID'] | |
698 | |
699 self.assertEqual(origSeries, DoGet(_REMOTE, '/series/%s' % newSeries)['AnonymizedFrom']) | |
700 instances = DoGet(_REMOTE, '/series/%s' % newSeries)['Instances'] | |
701 self.assertEqual(4, len(instances)) | |
702 for i in instances: | |
703 j = DoGet(_REMOTE, '/instances/%s' % i)['AnonymizedFrom'] | |
704 self.assertEqual(newSeries, DoGet(_REMOTE, '/instances/%s' % i)['ParentSeries']) | |
705 self.assertEqual(origSeries, DoGet(_REMOTE, '/instances/%s' % j)['ParentSeries']) | |
706 | |
707 DoGet(_REMOTE, '/instances/%s/content/0008-1010' % j) | |
708 self.assertRaises(Exception, lambda: DoGet(_REMOTE, '/instances/%s/content/0008-1010' % i)) | |
709 | |
710 | |
711 def test_anonymize_study(self): | |
712 # Upload 4 images from the 2 series of the same study | |
713 for i in range(4): | |
714 UploadInstance(_REMOTE, 'Brainix/Flair/IM-0001-000%d.dcm' % (i + 1)) | |
715 UploadInstance(_REMOTE, 'Brainix/Epi/IM-0001-000%d.dcm' % (i + 1)) | |
716 | |
717 origStudy = DoGet(_REMOTE, '/studies')[0] | |
718 newStudy = DoPost(_REMOTE,'/studies/%s/anonymize' % origStudy, | |
719 '{"Replace":{"PatientName":"Jodogne"}}', | |
720 'application/json')['ID'] | |
721 | |
722 self.assertEqual(origStudy, DoGet(_REMOTE, '/studies/%s' % newStudy)['AnonymizedFrom']) | |
723 series = DoGet(_REMOTE, '/studies/%s' % newStudy)['Series'] | |
724 self.assertEqual(2, len(series)) | |
725 for s in series: | |
726 ss = DoGet(_REMOTE, '/series/%s' % s)['AnonymizedFrom'] | |
727 self.assertEqual(newStudy, DoGet(_REMOTE, '/series/%s' % s)['ParentStudy']) | |
728 self.assertEqual(origStudy, DoGet(_REMOTE, '/series/%s' % ss)['ParentStudy']) | |
729 | |
730 instances = DoGet(_REMOTE, '/series/%s' % s)['Instances'] | |
731 for i in instances: | |
732 j = DoGet(_REMOTE, '/instances/%s' % i)['AnonymizedFrom'] | |
733 self.assertEqual(s, DoGet(_REMOTE, '/instances/%s' % i)['ParentSeries']) | |
734 self.assertEqual(ss, DoGet(_REMOTE, '/instances/%s' % j)['ParentSeries']) | |
735 | |
736 self.assertEqual('Jodogne', DoGet(_REMOTE, '/instances/%s/content/0010-0010' % i).strip()) | |
737 self.assertNotEqual('Jodogne', DoGet(_REMOTE, '/instances/%s/content/0010-0010' % j).strip()) | |
11 | 738 |
739 | |
740 | |
741 def test_storescu(self): | |
742 # Check emptiness | |
743 e = DoGet(_REMOTE, '/exports') | |
744 self.assertEqual(0, len(e['Exports'])) | |
745 self.assertEqual(0, e['Last']) | |
746 self.assertTrue(e['Done']) | |
747 e = DoGet(_REMOTE, '/exports?last') | |
748 self.assertEqual(0, len(e['Exports'])) | |
749 self.assertEqual(0, e['Last']) | |
750 self.assertTrue(e['Done']) | |
751 | |
752 # Add 1 instance | |
753 i = UploadInstance(_REMOTE, 'DummyCT.dcm')['ID'] | |
754 self.assertEqual(0, len(DoGet(_LOCAL, '/patients'))) | |
755 | |
756 # Export the instance | |
757 j = DoPost(_REMOTE, '/modalities/orthanctest/store', str(i), 'text/plain') # instance | |
758 self.assertEqual(1, len(DoGet(_LOCAL, '/patients'))) | |
759 self.assertEqual(1, len(DoGet(_LOCAL, '/studies'))) | |
760 self.assertEqual(1, len(DoGet(_LOCAL, '/series'))) | |
761 self.assertEqual(1, len(DoGet(_LOCAL, '/instances'))) | |
762 | |
763 e = DoGet(_REMOTE, '/exports') | |
764 self.assertEqual(1, len(e['Exports'])) | |
765 self.assertTrue(e['Done']) | |
766 self.assertEqual(e['Exports'][-1]['Seq'], e['Last']) | |
767 e = DoGet(_REMOTE, '/exports?limit=1') | |
768 self.assertEqual(1, len(e['Exports'])) | |
769 self.assertTrue(e['Done']) | |
770 self.assertEqual(e['Exports'][-1]['Seq'], e['Last']) | |
771 e = DoGet(_REMOTE, '/exports?last') | |
772 self.assertEqual(1, len(e['Exports'])) | |
773 self.assertTrue(e['Done']) | |
774 self.assertEqual(e['Exports'][-1]['Seq'], e['Last']) | |
775 seqInstance = e['Last'] | |
776 | |
777 # Export the series | |
778 j = DoPost(_REMOTE, '/modalities/orthanctest/store', 'f2635388-f01d497a-15f7c06b-ad7dba06-c4c599fe', 'text/plain') | |
779 | |
780 e = DoGet(_REMOTE, '/exports') | |
781 self.assertEqual(2, len(e['Exports'])) | |
782 self.assertTrue(e['Done']) | |
783 self.assertEqual(e['Exports'][-1]['Seq'], e['Last']) | |
784 seqSeries = e['Last'] | |
785 self.assertNotEqual(seqInstance, seqSeries) | |
786 e = DoGet(_REMOTE, '/exports?limit=1&since=0') | |
787 self.assertEqual(1, len(e['Exports'])) | |
788 self.assertFalse(e['Done']) | |
789 self.assertEqual(e['Exports'][-1]['Seq'], seqInstance) | |
790 e = DoGet(_REMOTE, '/exports?limit=1&since=' + str(seqInstance)) | |
791 self.assertEqual(1, len(e['Exports'])) | |
792 self.assertTrue(e['Done']) | |
793 self.assertEqual(e['Exports'][-1]['Seq'], seqSeries) | |
794 e = DoGet(_REMOTE, '/exports?last') | |
795 self.assertEqual(1, len(e['Exports'])) | |
796 self.assertTrue(e['Done']) | |
797 self.assertEqual(e['Exports'][-1]['Seq'], seqSeries) | |
798 | |
799 # Export the study | |
800 j = DoPost(_REMOTE, '/modalities/orthanctest/store', 'b9c08539-26f93bde-c81ab0d7-bffaf2cb-a4d0bdd0', 'text/plain') | |
801 seqStudy = DoGet(_REMOTE, '/exports')['Last'] | |
802 | |
803 # Export the patient | |
804 j = DoPost(_REMOTE, '/modalities/orthanctest/store', '6816cb19-844d5aee-85245eba-28e841e6-2414fae2', 'text/plain') | |
805 self.assertEqual(1, len(DoGet(_LOCAL, '/patients'))) | |
806 self.assertEqual(1, len(DoGet(_LOCAL, '/studies'))) | |
807 self.assertEqual(1, len(DoGet(_LOCAL, '/series'))) | |
808 self.assertEqual(1, len(DoGet(_LOCAL, '/instances'))) | |
809 | |
810 e = DoGet(_REMOTE, '/exports') | |
811 self.assertEqual(4, len(e['Exports'])) | |
812 self.assertTrue(e['Done']) | |
813 self.assertEqual(e['Exports'][-1]['Seq'], e['Last']) | |
814 seqPatient = e['Last'] | |
815 self.assertNotEqual(seqInstance, seqSeries) | |
816 self.assertNotEqual(seqSeries, seqStudy) | |
817 self.assertNotEqual(seqStudy, seqPatient) | |
818 self.assertTrue(seqInstance < seqSeries) | |
819 self.assertTrue(seqSeries < seqStudy) | |
820 self.assertTrue(seqStudy < seqPatient) | |
821 e = DoGet(_REMOTE, '/exports?limit=1&since=0') | |
822 self.assertEqual(1, len(e['Exports'])) | |
823 self.assertFalse(e['Done']) | |
824 self.assertEqual(e['Exports'][-1]['Seq'], seqInstance) | |
825 e = DoGet(_REMOTE, '/exports?limit=1&since=' + str(seqInstance)) | |
826 self.assertEqual(1, len(e['Exports'])) | |
827 self.assertFalse(e['Done']) | |
828 self.assertEqual(e['Exports'][-1]['Seq'], seqSeries) | |
829 e = DoGet(_REMOTE, '/exports?limit=1&since=' + str(seqSeries)) | |
830 self.assertEqual(1, len(e['Exports'])) | |
831 self.assertFalse(e['Done']) | |
832 self.assertEqual(e['Exports'][-1]['Seq'], seqStudy) | |
833 e = DoGet(_REMOTE, '/exports?limit=1&since=' + str(seqStudy)) | |
834 self.assertEqual(1, len(e['Exports'])) | |
835 self.assertTrue(e['Done']) | |
836 self.assertEqual(e['Exports'][-1]['Seq'], seqPatient) | |
837 e = DoGet(_REMOTE, '/exports?last') | |
838 self.assertEqual(1, len(e['Exports'])) | |
839 self.assertTrue(e['Done']) | |
840 self.assertEqual(e['Exports'][-1]['Seq'], seqPatient) | |
841 | |
842 | |
843 # Check the content of the logged information | |
844 e = DoGet(_REMOTE, '/exports')['Exports'] | |
845 | |
846 if 'PatientID' in e[0]: | |
847 # Since Orthanc 0.8.6 | |
848 patient = 'PatientID' | |
849 study = 'StudyInstanceUID' | |
850 series = 'SeriesInstanceUID' | |
851 instance = 'SOPInstanceUID' | |
852 else: | |
853 # Up to Orthanc 0.8.5 | |
854 patient = 'PatientId' | |
855 study = 'StudyInstanceUid' | |
856 series = 'SeriesInstanceUid' | |
857 instance = 'SopInstanceUid' | |
858 | |
859 for k in range(4): | |
860 self.assertTrue('Date' in e[k]) | |
861 self.assertTrue('Seq' in e[k]) | |
862 self.assertEqual('orthanctest', e[k]['RemoteModality']) | |
863 | |
864 self.assertEqual(10, len(e[0])) | |
865 self.assertEqual('Instance', e[0]['ResourceType']) | |
866 self.assertEqual('66a662ce-7430e543-bad44d47-0dc5a943-ec7a538d', e[0]['ID']) | |
867 self.assertEqual('/instances/66a662ce-7430e543-bad44d47-0dc5a943-ec7a538d', e[0]['Path']) | |
868 self.assertEqual('1.2.840.113619.2.176.2025.1499492.7040.1171286242.109', e[0][instance]) | |
869 self.assertEqual('1.2.840.113619.2.176.2025.1499492.7391.1171285944.394', e[0][series]) | |
870 self.assertEqual('1.2.840.113619.2.176.2025.1499492.7391.1171285944.390', e[0][study]) | |
871 self.assertEqual('ozp00SjY2xG', e[0][patient]) | |
872 | |
873 self.assertEqual(9, len(e[1])) | |
874 self.assertEqual('Series', e[1]['ResourceType']) | |
875 self.assertEqual('f2635388-f01d497a-15f7c06b-ad7dba06-c4c599fe', e[1]['ID']) | |
876 self.assertEqual('/series/f2635388-f01d497a-15f7c06b-ad7dba06-c4c599fe', e[1]['Path']) | |
877 self.assertEqual('1.2.840.113619.2.176.2025.1499492.7391.1171285944.394', e[1][series]) | |
878 self.assertEqual('1.2.840.113619.2.176.2025.1499492.7391.1171285944.390', e[1][study]) | |
879 self.assertEqual('ozp00SjY2xG', e[1][patient]) | |
880 | |
881 self.assertEqual(8, len(e[2])) | |
882 self.assertEqual('Study', e[2]['ResourceType']) | |
883 self.assertEqual('b9c08539-26f93bde-c81ab0d7-bffaf2cb-a4d0bdd0', e[2]['ID']) | |
884 self.assertEqual('/studies/b9c08539-26f93bde-c81ab0d7-bffaf2cb-a4d0bdd0', e[2]['Path']) | |
885 self.assertEqual('1.2.840.113619.2.176.2025.1499492.7391.1171285944.390', e[2][study]) | |
886 self.assertEqual('ozp00SjY2xG', e[2][patient]) | |
887 | |
888 self.assertEqual(7, len(e[3])) | |
889 self.assertEqual('Patient', e[3]['ResourceType']) | |
890 self.assertEqual('6816cb19-844d5aee-85245eba-28e841e6-2414fae2', e[3]['ID']) | |
891 self.assertEqual('/patients/6816cb19-844d5aee-85245eba-28e841e6-2414fae2', e[3]['Path']) | |
892 self.assertEqual('ozp00SjY2xG', e[3][patient]) | |
893 | |
894 DropOrthanc(_REMOTE) | |
895 self.assertEqual(0, len(DoGet(_REMOTE, '/exports')['Exports'])) | |
896 | |
897 | |
898 def test_store_peer(self): | |
899 self.assertEqual(0, len(DoGet(_LOCAL, '/exports')['Exports'])) | |
900 self.assertEqual(0, len(DoGet(_REMOTE, '/exports')['Exports'])) | |
901 | |
902 i = UploadInstance(_REMOTE, 'DummyCT.dcm')['ID'] | |
903 self.assertEqual(0, len(DoGet(_LOCAL, '/patients'))) | |
904 self.assertEqual(1, len(DoGet(_REMOTE, '/patients'))) | |
905 | |
906 j = DoPost(_REMOTE, '/peers/peer/store', str(i), 'text/plain') | |
907 self.assertEqual(1, len(DoGet(_LOCAL, '/patients'))) | |
908 self.assertEqual(1, len(DoGet(_REMOTE, '/patients'))) | |
909 | |
910 self.assertEqual(1, len(DoGet(_REMOTE, '/exports')['Exports'])) | |
911 | |
912 DropOrthanc(_REMOTE) | |
913 self.assertEqual(0, len(DoGet(_REMOTE, '/exports')['Exports'])) | |
914 | |
915 | |
916 def test_bulk_storescu(self): | |
917 self.assertEqual(0, len(DoGet(_LOCAL, '/patients'))) | |
918 | |
919 a = UploadInstance(_REMOTE, 'Knee/T1/IM-0001-0001.dcm') | |
920 b = UploadInstance(_REMOTE, 'Knee/T2/IM-0001-0001.dcm') | |
921 | |
922 j = DoPost(_REMOTE, '/modalities/orthanctest/store', [ a['ID'], b['ID'] ], 'application/json') | |
923 self.assertEqual(2, len(DoGet(_LOCAL, '/instances'))) | |
924 | |
925 DropOrthanc(_LOCAL) | |
926 | |
927 # Send using patient's UUID | |
928 self.assertEqual(0, len(DoGet(_LOCAL, '/instances'))) | |
929 j = DoPost(_REMOTE, '/modalities/orthanctest/store', | |
930 [ 'ca29faea-b6a0e17f-067743a1-8b778011-a48b2a17' ], 'application/json') | |
931 self.assertEqual(2, len(DoGet(_LOCAL, '/instances'))) | |
932 | |
933 | |
934 def test_color(self): | |
935 i = UploadInstance(_REMOTE, 'ColorTestMalaterre.dcm')['ID'] | |
936 im = GetImage(_REMOTE, '/instances/%s/preview' % i) | |
937 self.assertEqual("RGB", im.mode) | |
938 self.assertEqual(41, im.size[0]) | |
939 self.assertEqual(41, im.size[1]) | |
940 | |
941 # http://effbot.org/zone/pil-comparing-images.htm | |
13 | 942 truth = Image.open(GetDatabasePath('ColorTestMalaterre.png')) |
11 | 943 self.assertTrue(ImageChops.difference(im, truth).getbbox() is None) |
944 | |
945 | |
12 | 946 def test_faking_ruby_put(self): |
947 UploadInstance(_REMOTE, 'Knee/T1/IM-0001-0001.dcm') | |
948 UploadInstance(_REMOTE, 'Brainix/Flair/IM-0001-0001.dcm') | |
949 self.assertEqual(2, len(DoGet(_REMOTE, '/patients'))) | |
950 a = DoGet(_REMOTE, '/patients')[0] | |
951 b = DoGet(_REMOTE, '/patients')[1] | |
952 self.assertEqual(0, DoGet(_REMOTE, '/patients/%s/protected' % a)) | |
953 DoGet(_REMOTE, '/patients/%s/protected' % a, data = { '_method' : 'PUT' }, body = '0') | |
954 self.assertEqual(0, DoGet(_REMOTE, '/patients/%s/protected' % a)) | |
955 DoGet(_REMOTE, '/patients/%s/protected' % a, data = { '_method' : 'PUT' }, body = '1') | |
956 self.assertEqual(1, DoGet(_REMOTE, '/patients/%s/protected' % a)) | |
957 DoGet(_REMOTE, '/patients/%s/protected' % a, data = { '_method' : 'PUT' }, body = '0') | |
958 self.assertEqual(0, DoGet(_REMOTE, '/patients/%s/protected' % a)) | |
959 | |
960 | |
961 def test_faking_ruby_delete(self): | |
962 UploadInstance(_REMOTE, 'Knee/T1/IM-0001-0001.dcm') | |
963 UploadInstance(_REMOTE, 'Brainix/Flair/IM-0001-0001.dcm') | |
964 self.assertEqual(2, len(DoGet(_REMOTE, '/patients'))) | |
965 a = DoGet(_REMOTE, '/patients')[0] | |
966 b = DoGet(_REMOTE, '/patients')[1] | |
967 DoGet(_REMOTE, '/patients/%s' % a, data = { '_method' : 'DELETE' }) | |
968 self.assertEqual(1, len(DoGet(_REMOTE, '/patients'))) | |
969 DoGet(_REMOTE, '/patients/%s' % b, data = { '_method' : 'DELETE' }) | |
970 self.assertEqual(0, len(DoGet(_REMOTE, '/patients'))) | |
971 | |
972 | |
973 def test_faking_google_put(self): | |
974 UploadInstance(_REMOTE, 'Knee/T1/IM-0001-0001.dcm') | |
975 UploadInstance(_REMOTE, 'Brainix/Flair/IM-0001-0001.dcm') | |
976 self.assertEqual(2, len(DoGet(_REMOTE, '/patients'))) | |
977 a = DoGet(_REMOTE, '/patients')[0] | |
978 b = DoGet(_REMOTE, '/patients')[1] | |
979 self.assertEqual(0, DoGet(_REMOTE, '/patients/%s/protected' % a)) | |
980 DoPost(_REMOTE, '/patients/%s/protected' % a, headers = { 'X-HTTP-Method-Override' : 'PUT' }, data = '0') | |
981 self.assertEqual(0, DoGet(_REMOTE, '/patients/%s/protected' % a)) | |
982 DoPost(_REMOTE, '/patients/%s/protected' % a, headers = { 'X-HTTP-Method-Override' : 'PUT' }, data = '1') | |
983 self.assertEqual(1, DoGet(_REMOTE, '/patients/%s/protected' % a)) | |
984 DoPost(_REMOTE, '/patients/%s/protected' % a, headers = { 'X-HTTP-Method-Override' : 'PUT' }, data = '0') | |
985 self.assertEqual(0, DoGet(_REMOTE, '/patients/%s/protected' % a)) | |
986 | |
987 | |
988 def test_faking_google_delete(self): | |
989 UploadInstance(_REMOTE, 'Knee/T1/IM-0001-0001.dcm') | |
990 UploadInstance(_REMOTE, 'Brainix/Flair/IM-0001-0001.dcm') | |
991 self.assertEqual(2, len(DoGet(_REMOTE, '/patients'))) | |
992 a = DoGet(_REMOTE, '/patients')[0] | |
993 b = DoGet(_REMOTE, '/patients')[1] | |
994 DoPost(_REMOTE, '/patients/%s' % a, headers = { 'X-HTTP-Method-Override' : 'DELETE' }) | |
995 self.assertEqual(1, len(DoGet(_REMOTE, '/patients'))) | |
996 DoPost(_REMOTE, '/patients/%s' % b, headers = { 'X-HTTP-Method-Override' : 'DELETE' }) | |
997 self.assertEqual(0, len(DoGet(_REMOTE, '/patients'))) | |
998 | |
999 | |
1000 def test_lua(self): | |
1001 self.assertEqual(42, DoPost(_REMOTE, '/tools/execute-script', 'print(42)')) | |
1002 self.assertTrue(IsDefinedInLua(_REMOTE, 'PrintRecursive')) | |
1003 self.assertFalse(IsDefinedInLua(_REMOTE, 'HelloWorld')) | |
1004 | |
1005 | |
1006 def test_metadata(self): | |
1007 UploadInstance(_REMOTE, 'Knee/T1/IM-0001-0001.dcm') | |
1008 p = DoGet(_REMOTE, '/patients')[0] | |
1009 i = DoGet(_REMOTE, '/instances')[0] | |
1010 | |
1011 m = DoGet(_REMOTE, '/patients/%s/metadata' % p) | |
1012 self.assertEqual(1, len(m)) | |
1013 self.assertEqual('LastUpdate', m[0]) | |
1014 | |
1015 m = DoGet(_REMOTE, '/instances/%s/metadata' % i) | |
145 | 1016 self.assertEqual(8, len(m)) |
12 | 1017 self.assertTrue('IndexInSeries' in m) |
1018 self.assertTrue('ReceptionDate' in m) | |
1019 self.assertTrue('RemoteAET' in m) | |
63
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test Origin metadata of instances
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
changeset
|
1020 self.assertTrue('Origin' in m) |
89
74b7b9aed5f8
test TransferSyntax metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
changeset
|
1021 self.assertTrue('TransferSyntax' in m) |
95
a807a4699eb4
testing of metadata SopClassUid
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
changeset
|
1022 self.assertTrue('SopClassUid' in m) |
145 | 1023 self.assertTrue('RemoteIP' in m) |
1024 self.assertTrue('HttpUsername' in m) | |
63
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test Origin metadata of instances
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parents:
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diff
changeset
|
1025 self.assertEqual(DoGet(_REMOTE, '/instances/%s/metadata/IndexInSeries' % i), 1) |
2652d562267a
test Origin metadata of instances
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
changeset
|
1026 self.assertEqual(DoGet(_REMOTE, '/instances/%s/metadata/Origin' % i), 'RestApi') |
2652d562267a
test Origin metadata of instances
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
changeset
|
1027 self.assertEqual(DoGet(_REMOTE, '/instances/%s/metadata/RemoteAET' % i), '') # None, received by REST API |
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test TransferSyntax metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
changeset
|
1028 self.assertEqual(DoGet(_REMOTE, '/instances/%s/metadata/TransferSyntax' % i), '1.2.840.10008.1.2.4.91') # JPEG2k |
95
a807a4699eb4
testing of metadata SopClassUid
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
92
diff
changeset
|
1029 self.assertEqual(DoGet(_REMOTE, '/instances/%s/metadata/SopClassUid' % i), '1.2.840.10008.5.1.4.1.1.4') |
12 | 1030 |
1031 # Play with custom metadata | |
1032 DoPut(_REMOTE, '/patients/%s/metadata/5555' % p, 'coucou') | |
1033 m = DoGet(_REMOTE, '/patients/%s/metadata' % p) | |
1034 self.assertEqual(2, len(m)) | |
1035 self.assertTrue('LastUpdate' in m) | |
1036 self.assertTrue('5555' in m) | |
1037 self.assertEqual('coucou', DoGet(_REMOTE, '/patients/%s/metadata/5555' % p)) | |
1038 DoPut(_REMOTE, '/patients/%s/metadata/5555' % p, 'hello') | |
1039 self.assertEqual('hello', DoGet(_REMOTE, '/patients/%s/metadata/5555' % p)) | |
1040 DoDelete(_REMOTE, '/patients/%s/metadata/5555' % p) | |
1041 m = DoGet(_REMOTE, '/patients/%s/metadata' % p) | |
1042 self.assertEqual(1, len(m)) | |
1043 self.assertTrue('LastUpdate' in m) | |
13 | 1044 |
1045 | |
1046 def test_statistics(self): | |
1047 # Upload 16 instances | |
1048 for i in range(4): | |
1049 UploadInstance(_REMOTE, 'Brainix/Flair/IM-0001-000%d.dcm' % (i + 1)) | |
1050 UploadInstance(_REMOTE, 'Brainix/Epi/IM-0001-000%d.dcm' % (i + 1)) | |
1051 UploadInstance(_REMOTE, 'Knee/T1/IM-0001-000%d.dcm' % (i + 1)) | |
1052 UploadInstance(_REMOTE, 'Knee/T2/IM-0001-000%d.dcm' % (i + 1)) | |
1053 | |
1054 s = DoGet(_REMOTE, '/statistics') | |
1055 self.assertEqual(16, s['CountInstances']) | |
1056 self.assertEqual(2, s['CountPatients']) | |
1057 self.assertEqual(2, s['CountStudies']) | |
1058 self.assertEqual(4, s['CountSeries']) | |
1059 d = int(s['TotalUncompressedSize']) | |
1060 | |
1061 e = 0 | |
1062 for patient in DoGet(_REMOTE, '/patients'): | |
1063 s = DoGet(_REMOTE, '/patients/%s/statistics' % patient) | |
1064 self.assertEqual(8, s['CountInstances']) | |
1065 self.assertEqual(1, s['CountStudies']) | |
1066 self.assertEqual(2, s['CountSeries']) | |
1067 e += int(s['UncompressedSize']) | |
1068 | |
1069 for study in DoGet(_REMOTE, '/studies'): | |
1070 s = DoGet(_REMOTE, '/studies/%s/statistics' % study) | |
1071 self.assertEqual(8, s['CountInstances']) | |
1072 self.assertEqual(2, s['CountSeries']) | |
1073 e += int(s['UncompressedSize']) | |
1074 | |
1075 for series in DoGet(_REMOTE, '/series'): | |
1076 s = DoGet(_REMOTE, '/series/%s/statistics' % series) | |
1077 self.assertEqual(4, s['CountInstances']) | |
1078 e += int(s['UncompressedSize']) | |
1079 | |
1080 self.assertEqual(3 * d, e) | |
1081 | |
1082 | |
1083 def test_custom_attachment(self): | |
1084 UploadInstance(_REMOTE, 'Brainix/Flair/IM-0001-0001.dcm') | |
1085 patient = DoGet(_REMOTE, '/patients')[0] | |
1086 instance = DoGet(_REMOTE, '/instances')[0] | |
1087 size = int(DoGet(_REMOTE, '/patients/%s/statistics' % patient)['DiskSize']) | |
1088 self.assertEqual(size, int(DoGet(_REMOTE, '/statistics')['TotalDiskSize'])) | |
1089 | |
1090 self.assertEqual(0, len(DoGet(_REMOTE, '/patients/%s/attachments' % patient))) | |
1091 self.assertEqual(2, len(DoGet(_REMOTE, '/instances/%s/attachments' % instance))) | |
1092 self.assertTrue('dicom' in DoGet(_REMOTE, '/instances/%s/attachments' % instance)) | |
1093 self.assertTrue('dicom-as-json' in DoGet(_REMOTE, '/instances/%s/attachments' % instance)) | |
1094 | |
1095 self.assertRaises(Exception, lambda: DoPut(_REMOTE, '/patients/%s/attachments/22' % patient, 'hello')) | |
1096 hello = 'hellohellohellohellohellohellohellohellohello' | |
1097 DoPut(_REMOTE, '/patients/%s/attachments/1025' % patient, hello) | |
1098 self.assertEqual(int(DoGet(_REMOTE, '/patients/%s/statistics' % patient)['DiskSize']), | |
1099 int(DoGet(_REMOTE, '/statistics')['TotalDiskSize'])) | |
1100 self.assertEqual(int(DoGet(_REMOTE, '/patients/%s/statistics' % patient)['DiskSize']), | |
1101 size + int(DoGet(_REMOTE, '/patients/%s/attachments/1025/compressed-size' % patient))) | |
1102 | |
1103 DoPut(_REMOTE, '/patients/%s/attachments/1026' % patient, 'world') | |
1104 self.assertEqual(int(DoGet(_REMOTE, '/patients/%s/statistics' % patient)['DiskSize']), | |
1105 int(DoGet(_REMOTE, '/statistics')['TotalDiskSize'])) | |
1106 self.assertEqual(int(DoGet(_REMOTE, '/patients/%s/statistics' % patient)['DiskSize']), | |
1107 size + | |
1108 int(DoGet(_REMOTE, '/patients/%s/attachments/1025/compressed-size' % patient)) + | |
1109 int(DoGet(_REMOTE, '/patients/%s/attachments/1026/compressed-size' % patient))) | |
1110 | |
1111 self.assertEqual(2, len(DoGet(_REMOTE, '/patients/%s/attachments' % patient))) | |
1112 self.assertEqual(hello, DoGet(_REMOTE, '/patients/%s/attachments/1025/data' % patient)) | |
1113 self.assertEqual('world', DoGet(_REMOTE, '/patients/%s/attachments/1026/data' % patient)) | |
1114 DoPost(_REMOTE, '/patients/%s/attachments/1025/verify-md5' % patient) | |
1115 DoPost(_REMOTE, '/patients/%s/attachments/1026/verify-md5' % patient) | |
1116 DoPut(_REMOTE, '/patients/%s/attachments/1026' % patient, 'world2') | |
1117 self.assertEqual('world2', DoGet(_REMOTE, '/patients/%s/attachments/1026/data' % patient)) | |
1118 | |
1119 self.assertRaises(Exception, lambda: DoDelete(_REMOTE, '/instances/%s/attachments/dicom' % instance)) | |
1120 DoDelete(_REMOTE, '/patients/%s/attachments/1025' % patient) | |
1121 self.assertEqual(int(DoGet(_REMOTE, '/patients/%s/statistics' % patient)['DiskSize']), | |
1122 int(DoGet(_REMOTE, '/statistics')['TotalDiskSize'])) | |
1123 self.assertEqual(int(DoGet(_REMOTE, '/patients/%s/statistics' % patient)['DiskSize']), | |
1124 size + int(DoGet(_REMOTE, '/patients/%s/attachments/1026/compressed-size' % patient))) | |
1125 | |
1126 self.assertEqual(1, len(DoGet(_REMOTE, '/patients/%s/attachments' % patient))) | |
1127 DoDelete(_REMOTE, '/patients/%s/attachments/1026' % patient) | |
1128 self.assertEqual(0, len(DoGet(_REMOTE, '/patients/%s/attachments' % patient))) | |
1129 | |
1130 self.assertEqual(int(DoGet(_REMOTE, '/patients/%s/statistics' % patient)['DiskSize']), size) | |
1131 self.assertEqual(size, int(DoGet(_REMOTE, '/statistics')['TotalDiskSize'])) | |
1132 | |
1133 | |
1134 def test_incoming_storescu(self): | |
1135 self.assertEqual(0, len(DoGet(_REMOTE, '/patients'))) | |
45 | 1136 subprocess.check_call([ FindExecutable('storescu'), |
44
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1137 _REMOTE['Server'], str(_REMOTE['DicomPort']), |
13 | 1138 GetDatabasePath('ColorTestImageJ.dcm') ]) |
1139 self.assertEqual(1, len(DoGet(_REMOTE, '/patients'))) | |
1140 | |
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1141 i = DoGet(_REMOTE, '/instances') |
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1142 self.assertEqual(1, len(i)) |
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1143 m = DoGet(_REMOTE, '/instances/%s/metadata' % i[0]) |
145 | 1144 self.assertEqual(8, len(m)) |
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1145 self.assertTrue('IndexInSeries' in m) |
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1146 self.assertTrue('ReceptionDate' in m) |
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1147 self.assertTrue('RemoteAET' in m) |
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1148 self.assertTrue('Origin' in m) |
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1149 self.assertTrue('TransferSyntax' in m) |
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1150 self.assertTrue('SopClassUid' in m) |
145 | 1151 self.assertTrue('RemoteIP' in m) |
1152 self.assertTrue('CalledAET' in m) | |
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1153 self.assertEqual(DoGet(_REMOTE, '/instances/%s/metadata/IndexInSeries' % i[0]), 1) |
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1154 self.assertEqual(DoGet(_REMOTE, '/instances/%s/metadata/Origin' % i[0]), 'DicomProtocol') |
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1155 self.assertEqual(DoGet(_REMOTE, '/instances/%s/metadata/RemoteAET' % i[0]), 'STORESCU') |
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1156 self.assertEqual(DoGet(_REMOTE, '/instances/%s/metadata/TransferSyntax' % i[0]), '1.2.840.10008.1.2.1') |
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1157 self.assertEqual(DoGet(_REMOTE, '/instances/%s/metadata/SopClassUid' % i[0]), '1.2.840.10008.5.1.4.1.1.7') |
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1158 |
13 | 1159 |
1160 def test_incoming_findscu(self): | |
1161 UploadInstance(_REMOTE, 'Multiframe.dcm') | |
1162 UploadInstance(_REMOTE, 'ColorTestImageJ.dcm') | |
1163 | |
1164 i = CallFindScu([ '-k', '0008,0052=PATIENT', '-k', '0010,0010' ]) | |
1165 patientNames = re.findall('\(0010,0010\).*?\[(.*?)\]', i) | |
1166 self.assertEqual(2, len(patientNames)) | |
1167 self.assertTrue('Test Patient BG ' in patientNames) | |
1168 self.assertTrue('Anonymized' in patientNames) | |
1169 | |
1170 i = CallFindScu([ '-k', '0008,0052=SERIES', '-k', '0008,0021' ]) | |
1171 series = re.findall('\(0008,0021\).*?\[\s*(.*?)\s*\]', i) | |
1172 self.assertEqual(2, len(series)) | |
1173 self.assertTrue('20070208' in series) | |
1174 self.assertTrue('19980312' in series) | |
1175 | |
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1176 i = CallFindScu([ '-k', '0008,0052=SERIES', '-k', '0008,0021', '-k', 'ModalitiesInStudy=MR\\XA' ]) |
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1177 series = re.findall('\(0008,0021\).*?\[\s*(.*?)\s*\]', i) |
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1178 self.assertEqual(1, len(series)) |
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1179 self.assertTrue('19980312' in series) |
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1180 |
13 | 1181 i = CallFindScu([ '-k', '0008,0052=SERIES', '-k', 'PatientName=Anonymized' ]) |
1182 series = re.findall('\(0010,0010\).*?\[\s*(.*?)\s*\]', i) | |
1183 self.assertEqual(1, len(series)) | |
1184 | |
1185 # Test the "CaseSentitivePN" flag (false by default) | |
1186 i = CallFindScu([ '-k', '0008,0052=SERIES', '-k', 'PatientName=anonymized' ]) | |
1187 series = re.findall('\(0010,0010\).*?\[\s*(.*?)\s*\]', i) | |
1188 self.assertEqual(1, len(series)) | |
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1189 |
70 | 1190 # Test range search (buggy if Orthanc <= 0.9.6) |
1191 i = CallFindScu([ '-k', '0008,0052=STUDY', '-k', 'StudyDate=19980312-' ]) | |
1192 studies = re.findall('\(0008,0020\).*?\[\s*(.*?)\s*\]', i) | |
1193 self.assertEqual(2, len(studies)) | |
1194 self.assertTrue('20070208' in studies) | |
1195 self.assertTrue('19980312' in studies) | |
1196 i = CallFindScu([ '-k', '0008,0052=STUDY', '-k', 'StudyDate=19980312-19980312' ]) | |
1197 studies = re.findall('\(0008,0020\).*?\[\s*(.*?)\s*\]', i) | |
1198 self.assertEqual(1, len(studies)) | |
1199 self.assertTrue('19980312' in studies) | |
1200 i = CallFindScu([ '-k', '0008,0052=STUDY', '-k', 'StudyDate=-19980312' ]) | |
1201 studies = re.findall('\(0008,0020\).*?\[\s*(.*?)\s*\]', i) | |
1202 self.assertEqual(1, len(studies)) | |
1203 self.assertTrue('19980312' in studies) | |
13 | 1204 |
1205 | |
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1206 def test_incoming_findscu_2(self): |
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1207 # This test fails if "LookupMode_DatabaseOnly" is used |
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1208 # (sequences are not available in this mode, and only main |
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1209 # DICOM tags are returned) |
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1210 UploadInstance(_REMOTE, 'Multiframe.dcm') |
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1211 UploadInstance(_REMOTE, 'ColorTestImageJ.dcm') |
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1212 |
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1213 # Test returning sequence values (only since Orthanc 0.9.5) |
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1214 i = CallFindScu([ '-k', '0008,0052=SERIES', '-k', '0008,2112' ]) # "ColorTestImageJ" has this sequence tag |
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1215 sequences = re.findall('\(0008,2112\)', i) |
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1216 self.assertEqual(1, len(sequences)) |
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1217 |
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1218 # Test returning a non-main DICOM tag, |
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1219 # "SecondaryCaptureDeviceID" (0018,1010), whose value is |
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1220 # "MEDPC" in "ColorTestImageJ.dcm" |
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1221 i = CallFindScu([ '-k', '0008,0052=SERIES', '-k', '0018,1010' ]) |
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1222 tags = re.findall('\(0018,1010\).*MEDPC', i) |
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1223 self.assertEqual(1, len(tags)) |
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1224 |
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1225 |
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1226 def test_incoming_findscu_3(self): |
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1227 # This test fails if "LookupMode_DatabaseOnly" or |
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1228 # "LookupMode_DiskOnAnswer" is used, as |
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1229 # "SecondaryCaptureDeviceID" (0018,1010) is not a main DICOM |
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1230 # tag, as thus a constraint cannot be applied to it |
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1231 UploadInstance(_REMOTE, 'ColorTestImageJ.dcm') |
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1232 |
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1233 i = CallFindScu([ '-k', '0008,0052=SERIES', '-k', '0018,1010=MEDPC' ]) |
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1234 sequences = re.findall('\(0018,1010\)', i) |
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1235 self.assertEqual(1, len(sequences)) |
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1236 |
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1237 |
13 | 1238 def test_incoming_movescu(self): |
1239 UploadInstance(_REMOTE, 'Multiframe.dcm') | |
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1240 |
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1241 # No matching patient, so no job is created |
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1242 self.assertEqual(0, len(DoGet(_LOCAL, '/patients'))) |
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1243 CallMoveScu([ '--patient', '-k', '0008,0052=PATIENT', '-k', 'PatientID=none' ]) |
13 | 1244 self.assertEqual(0, len(DoGet(_LOCAL, '/patients'))) |
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1245 |
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1246 # 1 Matching patient, track the job |
138 | 1247 self.assertTrue(MonitorJob(_REMOTE, lambda: CallMoveScu([ |
1248 '--patient', | |
1249 '-k', '0008,0052=PATIENT', | |
1250 '-k', 'PatientID=12345678' | |
1251 ]))) | |
13 | 1252 self.assertEqual(1, len(DoGet(_LOCAL, '/patients'))) |
1253 | |
1254 | |
1255 def test_findscu(self): | |
1256 i = UploadInstance(_REMOTE, 'DummyCT.dcm')['ID'] | |
1257 j = UploadInstance(_REMOTE, 'Issue22.dcm')['ID'] | |
1258 k = UploadInstance(_REMOTE, 'ColorTestImageJ.dcm')['ID'] | |
1259 DoPost(_REMOTE, '/modalities/orthanctest/store', str(i), 'text/plain') | |
1260 | |
1261 # Test the "find-patient" level | |
1262 p = DoPost(_REMOTE, '/modalities/orthanctest/find-patient', { }) | |
1263 self.assertEqual(1, len(p)) | |
1264 self.assertEqual('ozp00SjY2xG', p[0]['PatientID']) | |
1265 | |
1266 # Test wildcards constraints. The "LO" value representation | |
1267 # for PatientID is always case-sensitive, but the "PN" for | |
1268 # PatientName might depend on the implementation: | |
1269 # "GenerateConfigurationForTests.py" will force it to be case | |
1270 # insensitive (which was the default until Orthanc 0.8.6). | |
1271 p = DoPost(_REMOTE, '/modalities/orthanctest/find-patient', { 'PatientName' : 'K*' }) | |
1272 self.assertEqual(1, len(p)) | |
1273 | |
1274 p = DoPost(_REMOTE, '/modalities/orthanctest/find-patient', { 'PatientName' : 'k*' }) | |
1275 self.assertEqual(1, len(p)) | |
1276 | |
1277 p = DoPost(_REMOTE, '/modalities/orthanctest/find-patient', { 'PatientID' : 'ozp*' }) | |
1278 self.assertEqual(1, len(p)) | |
1279 | |
1280 p = DoPost(_REMOTE, '/modalities/orthanctest/find-patient', { 'PatientID' : 'o?p*' }) | |
1281 self.assertEqual(1, len(p)) | |
1282 | |
1283 p = DoPost(_REMOTE, '/modalities/orthanctest/find-patient', { 'PatientID' : '0?q*' }) | |
1284 self.assertEqual(0, len(p)) | |
1285 | |
1286 p = DoPost(_REMOTE, '/modalities/orthanctest/find-patient', { 'PatientName' : 'B*' }) | |
1287 self.assertEqual(0, len(p)) | |
1288 | |
1289 p = DoPost(_REMOTE, '/modalities/orthanctest/find-patient', { 'PatientName' : 'b*' }) | |
1290 self.assertEqual(0, len(p)) | |
1291 | |
1292 DoPost(_REMOTE, '/modalities/orthanctest/store', str(j), 'text/plain') | |
1293 DoPost(_REMOTE, '/modalities/orthanctest/store', str(k), 'text/plain') | |
1294 DoPost(_REMOTE, '/modalities/orthanctest/find-patient', { }) | |
1295 self.assertEqual(3, len(DoPost(_REMOTE, '/modalities/orthanctest/find-patient', { }))) | |
1296 | |
1297 p = DoPost(_REMOTE, '/modalities/orthanctest/find-patient', { 'PatientName' : 'A*' }) | |
1298 self.assertEqual(2, len(p)) | |
1299 | |
1300 # Test the "find-study" level. This is the instance "ColorTestImageJ.dcm" | |
1301 s = DoPost(_REMOTE, '/modalities/orthanctest/find-study', { 'PatientID' : 'B9uTHKOZ' }) | |
1302 self.assertEqual(1, len(s)) | |
1303 self.assertEqual('20070208', s[0]['StudyDate']) | |
1304 | |
1305 # Test range searches | |
1306 t = DoPost(_REMOTE, '/modalities/orthanctest/find-study', { 'PatientID' : 'B9uTHKOZ', | |
1307 'StudyDate' : '-20070101' }) | |
1308 self.assertEqual(0, len(t)) | |
1309 | |
1310 t = DoPost(_REMOTE, '/modalities/orthanctest/find-study', { 'PatientID' : 'B9uTHKOZ', | |
1311 'StudyDate' : '20090101-' }) | |
1312 self.assertEqual(0, len(t)) | |
1313 | |
1314 t = DoPost(_REMOTE, '/modalities/orthanctest/find-study', { 'PatientID' : 'B9uTHKOZ', | |
1315 'StudyDate' : '20070101-' }) | |
1316 self.assertEqual(1, len(t)) | |
1317 | |
1318 t = DoPost(_REMOTE, '/modalities/orthanctest/find-study', { 'PatientID' : 'B9uTHKOZ', | |
1319 'StudyDate' : '-20090101' }) | |
1320 self.assertEqual(1, len(t)) | |
1321 | |
1322 t = DoPost(_REMOTE, '/modalities/orthanctest/find-study', { 'PatientID' : 'B9uTHKOZ', | |
1323 'StudyDate' : '20070207-20070207' }) | |
1324 self.assertEqual(0, len(t)) | |
1325 | |
1326 t = DoPost(_REMOTE, '/modalities/orthanctest/find-study', { 'PatientID' : 'B9uTHKOZ', | |
1327 'StudyDate' : '20070208-20070208' }) | |
1328 self.assertEqual(1, len(t)) | |
1329 | |
1330 t = DoPost(_REMOTE, '/modalities/orthanctest/find-study', { 'PatientID' : 'B9uTHKOZ', | |
1331 'StudyDate' : '20070209-20070209' }) | |
1332 self.assertEqual(0, len(t)) | |
1333 | |
1334 # Test the ModalitiesInStudy tag | |
1335 t = DoPost(_REMOTE, '/modalities/orthanctest/find-study', { | |
1336 'PatientID' : 'B9uTHKOZ', | |
1337 'ModalitiesInStudy' : 'US' }) | |
1338 self.assertEqual(0, len(t)) | |
1339 | |
1340 t = DoPost(_REMOTE, '/modalities/orthanctest/find-study', { | |
1341 'PatientID' : 'B9uTHKOZ', | |
1342 'ModalitiesInStudy' : 'CT' }) | |
1343 self.assertEqual(1, len(t)) | |
1344 | |
1345 t = DoPost(_REMOTE, '/modalities/orthanctest/find-study', { | |
1346 'PatientID' : 'B9uTHKOZ', | |
1347 'ModalitiesInStudy' : 'US\\CT' }) | |
1348 self.assertEqual(1, len(t)) | |
1349 | |
1350 # Test the "find-series" level | |
1351 t = DoPost(_REMOTE, '/modalities/orthanctest/find-series', { | |
1352 'PatientID' : 'B9uTHKOZ', | |
1353 'StudyInstanceUID' : s[0]['StudyInstanceUID'] }) | |
1354 self.assertEqual(1, len(t)) | |
1355 | |
1356 # Test "\" separator | |
1357 t = DoPost(_REMOTE, '/modalities/orthanctest/find-series', { | |
1358 'PatientID' : 'B9uTHKOZ', | |
1359 'StudyInstanceUID' : s[0]['StudyInstanceUID'], | |
1360 'Modality' : 'MR\\CT\\US' }) | |
1361 self.assertEqual(1, len(t)) | |
1362 | |
1363 t = DoPost(_REMOTE, '/modalities/orthanctest/find-series', { | |
1364 'PatientID' : 'B9uTHKOZ', | |
1365 'StudyInstanceUID' : s[0]['StudyInstanceUID'], | |
1366 'Modality' : 'MR\\US' }) | |
1367 self.assertEqual(0, len(t)) | |
1368 | |
1369 | |
1370 def test_update_modalities(self): | |
1371 try: | |
1372 DoDelete(_REMOTE, '/modalities/toto') | |
1373 except: | |
1374 pass | |
1375 try: | |
1376 DoDelete(_REMOTE, '/modalities/tata') | |
1377 except: | |
1378 pass | |
1379 self.assertRaises(Exception, lambda: DoGet(_REMOTE, '/modalities/toto')) | |
1380 DoPut(_REMOTE, '/modalities/toto', [ "STORESCP", "localhost", 2000 ]) | |
116 | 1381 DoPut(_REMOTE, '/modalities/tata', [ "STORESCP", "localhost", 2000, 'MedInria' ]) # check backward compatiblity with obsolete manufacturer |
1382 DoDelete(_REMOTE, '/modalities/tata') | |
124 | 1383 DoPut(_REMOTE, '/modalities/tata', [ "STORESCP", "localhost", 2000, 'GenericNoUniversalWildcard' ]) |
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1384 DoDelete(_REMOTE, '/modalities/tata') |
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1385 DoPut(_REMOTE, '/modalities/tata', [ "STORESCP", "localhost", 2000, 'GenericNoWildcardInDates' ]) |
128 | 1386 modalitiesReadback = DoGet(_REMOTE, '/modalities?expand') |
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1387 self.assertEqual('STORESCP', modalitiesReadback['tata']['AET']) |
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1388 self.assertEqual('localhost', modalitiesReadback['tata']['Host']) |
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1389 self.assertEqual(2000, modalitiesReadback['tata']['Port']) |
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1390 self.assertEqual('GenericNoWildcardInDates', modalitiesReadback['tata']['Manufacturer']) |
116 | 1391 self.assertRaises(Exception, lambda: DoPut(_REMOTE, '/modalities/toto', [ "STORESCP", "localhost", 2000, 'InvalidManufacturerName' ])) |
13 | 1392 self.assertTrue('store' in DoGet(_REMOTE, '/modalities/toto')) |
1393 self.assertTrue('store' in DoGet(_REMOTE, '/modalities/tata')) | |
1394 DoDelete(_REMOTE, '/modalities/toto') | |
1395 DoDelete(_REMOTE, '/modalities/tata') | |
1396 self.assertRaises(Exception, lambda: DoGet(_REMOTE, '/modalities/toto')) | |
1397 self.assertRaises(Exception, lambda: DoGet(_REMOTE, '/modalities/tata')) | |
1398 | |
1399 | |
1400 def test_update_peers(self): | |
1401 # curl -X PUT http://localhost:8042/peers/toto -d '["http://localhost:8042/"]' -v | |
1402 try: | |
1403 DoDelete(_REMOTE, '/peers/toto') | |
1404 except: | |
1405 pass | |
1406 try: | |
1407 DoDelete(_REMOTE, '/peers/tata') | |
1408 except: | |
1409 pass | |
1410 self.assertRaises(Exception, lambda: DoGet(_REMOTE, '/peers/toto')) | |
1411 DoPut(_REMOTE, '/peers/toto', [ 'http://localhost:8042/' ]) | |
214 | 1412 DoPut(_REMOTE, '/peers/tata', { 'Url': 'http://localhost:8042/', |
1413 'Username': 'user', | |
1414 'Password' : 'pass', | |
1415 'RemoteSelf' : 'self' }) | |
128 | 1416 self.assertTrue('tata' in DoGet(_REMOTE, '/peers')) |
1417 peersReadback = DoGet(_REMOTE, '/peers?expand') | |
1418 self.assertEqual('http://localhost:8042/', peersReadback['tata']['Url']) | |
1419 self.assertEqual('user', peersReadback['tata']['Username']) | |
214 | 1420 |
1421 if IsOrthancVersionAbove(_REMOTE, 1, 5, 4): | |
1422 self.assertEqual(None, peersReadback['tata']['Password']) # make sure no sensitive data is included | |
1423 self.assertFalse(peersReadback['tata']['Pkcs11']) # make sure no sensitive data is included | |
1424 self.assertEqual('self', peersReadback['tata']['RemoteSelf']) | |
1425 else: | |
1426 self.assertFalse('Password' in peersReadback['tata']) # make sure no sensitive data is included | |
1427 self.assertFalse('Pkcs11' in peersReadback['tata']) # make sure no sensitive data is included | |
1428 self.assertFalse('RemoteSelf' in peersReadback['tata']) | |
1429 | |
128 | 1430 self.assertFalse('CertificateFile' in peersReadback['tata']) # make sure no sensitive data is included |
1431 self.assertFalse('CertificateKeyFile' in peersReadback['tata']) # make sure no sensitive data is included | |
1432 self.assertFalse('CertificateKeyPassword' in peersReadback['tata']) # make sure no sensitive data is included | |
214 | 1433 |
13 | 1434 self.assertRaises(Exception, lambda: DoPut(_REMOTE, '/peers/toto', [ 'http://localhost:8042/', 'a' ])) |
1435 self.assertRaises(Exception, lambda: DoPut(_REMOTE, '/peers/toto', [ 'http://localhost:8042/', 'a', 'b', 'c' ])) | |
1436 self.assertTrue('store' in DoGet(_REMOTE, '/peers/toto')) | |
1437 self.assertTrue('store' in DoGet(_REMOTE, '/peers/tata')) | |
1438 DoDelete(_REMOTE, '/peers/toto') | |
1439 DoDelete(_REMOTE, '/peers/tata') | |
1440 self.assertRaises(Exception, lambda: DoGet(_REMOTE, '/peers/toto')) | |
1441 self.assertRaises(Exception, lambda: DoGet(_REMOTE, '/peers/tata')) | |
1442 | |
1443 | |
1444 def test_mesterhazy_modification(self): | |
1445 # When I modify a series ( eg. curl | |
1446 # http://localhost:8042/series/uidhere/modify -X POST -d | |
1447 # '{"Replace":{"SeriesDate":"19990101"}}' ) the modified | |
1448 # series is added to a new Study, instead of the existing | |
1449 # Study. Fixed in Orthanc 0.7.5 | |
1450 | |
1451 u = UploadInstance(_REMOTE, 'DummyCT.dcm') | |
1452 study = 'b9c08539-26f93bde-c81ab0d7-bffaf2cb-a4d0bdd0' | |
1453 series = 'f2635388-f01d497a-15f7c06b-ad7dba06-c4c599fe' | |
1454 | |
1455 modified = DoPost(_REMOTE, '/series/%s/modify' % series, | |
1456 json.dumps({ "Replace" : { "SeriesDate" : "19990101" }})) | |
1457 | |
1458 self.assertEqual(study, DoGet(_REMOTE, '/series/%s' % modified['ID']) ['ParentStudy']) | |
1459 | |
1460 | |
1461 def test_create(self): | |
1462 i = DoPost(_REMOTE, '/tools/create-dicom', | |
1463 json.dumps({ | |
1464 'PatientName' : 'Jodogne', | |
1465 'Modality' : 'CT', | |
58 | 1466 'SOPClassUID' : '1.2.840.10008.5.1.4.1.1.1', |
13 | 1467 'PixelData' : 'data:image/png;base64,iVBORw0KGgoAAAANSUhEUgAAAAUAAAAFCAYAAACNbyblAAAAHElEQVQI12P4//8/w38GIAXDIBKE0DHxgljNBAAO9TXL0Y4OHwAAAABJRU5ErkJggg==' # red dot in RGBA |
1468 })) | |
1469 | |
1470 self.assertEqual('Jodogne', DoGet(_REMOTE, '/instances/%s/content/PatientName' % i['ID']).strip()) | |
1471 self.assertEqual('CT', DoGet(_REMOTE, '/instances/%s/content/Modality' % i['ID']).strip()) | |
1472 | |
1473 png = GetImage(_REMOTE, '/instances/%s/preview' % i['ID']) | |
1474 self.assertEqual((5, 5), png.size) | |
1475 | |
38 | 1476 j = DoGet(_REMOTE, i['Path']) |
1477 self.assertEqual('Instance', j['Type']) | |
1478 self.assertEqual(j['ID'], i['ID']) | |
1479 | |
13 | 1480 |
1481 def test_pilates(self): | |
1482 # "SCU failed error when accessing orthanc with osirix" by | |
1483 # Pilates Agentur (Mar 10, 2014 at 9:33 PM) | |
1484 i = UploadInstance(_REMOTE, 'PilatesArgenturGEUltrasoundOsiriX.dcm')['ID'] | |
1485 self.assertEqual(0, len(DoGet(_LOCAL, '/patients'))) | |
1486 j = DoPost(_REMOTE, '/modalities/orthanctest/store', str(i), 'text/plain') | |
1487 self.assertEqual(1, len(DoGet(_LOCAL, '/patients'))) | |
1488 | |
1489 | |
1490 def test_shared_tags(self): | |
1491 a = UploadInstance(_REMOTE, 'Knee/T1/IM-0001-0001.dcm')['ID'] | |
1492 b = UploadInstance(_REMOTE, 'Knee/T1/IM-0001-0002.dcm')['ID'] | |
1493 p = DoGet(_REMOTE, '/patients')[0] | |
1494 | |
1495 self.assertTrue('0010,0010' in DoGet(_REMOTE, '/patients/%s/shared-tags' % p)) | |
1496 self.assertTrue('PatientName' in DoGet(_REMOTE, '/patients/%s/shared-tags?simplify' % p)) | |
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1497 self.assertTrue('0010,0010' in DoGet(_REMOTE, '/patients/%s/shared-tags?short' % p)) |
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1498 |
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1499 self.assertEqual('KNEE', DoGet(_REMOTE, '/patients/%s/shared-tags' % p)['0010,0010']['Value']) |
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1500 self.assertEqual('KNEE', DoGet(_REMOTE, '/patients/%s/shared-tags?simplify' % p)['PatientName']) |
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1501 self.assertEqual('KNEE', DoGet(_REMOTE, '/patients/%s/shared-tags?short' % p)['0010,0010']) |
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1502 |
13 | 1503 self.assertTrue('0008,1030' in DoGet(_REMOTE, '/patients/%s/shared-tags' % p)) |
1504 self.assertTrue('StudyDescription' in DoGet(_REMOTE, '/patients/%s/shared-tags?simplify' % p)) | |
1505 self.assertTrue('0008,103e' in DoGet(_REMOTE, '/patients/%s/shared-tags' % p)) | |
1506 self.assertTrue('SeriesDescription' in DoGet(_REMOTE, '/patients/%s/shared-tags?simplify' % p)) | |
1507 self.assertFalse('0008,0018' in DoGet(_REMOTE, '/patients/%s/shared-tags' % p)) | |
1508 self.assertFalse('SOPInstanceUID' in DoGet(_REMOTE, '/patients/%s/shared-tags?simplify' % p)) | |
1509 | |
1510 self.assertTrue('0008,0018' in DoGet(_REMOTE, '/instances/%s/tags' % a)) | |
1511 self.assertTrue('SOPInstanceUID' in DoGet(_REMOTE, '/instances/%s/tags?simplify' % a)) | |
1512 | |
1513 | |
1514 def test_modules(self): | |
1515 a = UploadInstance(_REMOTE, 'Knee/T1/IM-0001-0001.dcm')['ID'] | |
1516 p = DoGet(_REMOTE, '/patients')[0] | |
1517 s = DoGet(_REMOTE, '/studies')[0] | |
1518 t = DoGet(_REMOTE, '/series')[0] | |
1519 | |
1520 self.assertTrue('0010,0010' in DoGet(_REMOTE, '/patients/%s/module' % p)) | |
1521 self.assertTrue('PatientName' in DoGet(_REMOTE, '/patients/%s/module?simplify' % p)) | |
1522 self.assertTrue('0010,0010' in DoGet(_REMOTE, '/studies/%s/module-patient' % p)) | |
1523 self.assertTrue('PatientName' in DoGet(_REMOTE, '/studies/%s/module-patient?simplify' % p)) | |
1524 self.assertTrue('0008,1030' in DoGet(_REMOTE, '/studies/%s/module' % s)) | |
1525 self.assertTrue('StudyDescription' in DoGet(_REMOTE, '/studies/%s/module?simplify' % s)) | |
1526 self.assertTrue('0008,103e' in DoGet(_REMOTE, '/series/%s/module' % p)) | |
1527 self.assertTrue('SeriesDescription' in DoGet(_REMOTE, '/series/%s/module?simplify' % p)) | |
1528 self.assertTrue('0008,0018' in DoGet(_REMOTE, '/instances/%s/module' % a)) | |
1529 self.assertTrue('SOPInstanceUID' in DoGet(_REMOTE, '/instances/%s/module?simplify' % a)) | |
1530 | |
1531 | |
1532 def test_auto_directory(self): | |
1533 a = UploadInstance(_REMOTE, 'Knee/T1/IM-0001-0001.dcm')['ID'] | |
1534 self.assertTrue('now' in DoGet(_REMOTE, '/tools')) | |
1535 self.assertTrue('dicom-conformance' in DoGet(_REMOTE, '/tools')) | |
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1536 self.assertTrue('invalidate-tags' in DoGet(_REMOTE, '/tools')) |
13 | 1537 self.assertTrue(len(DoGet(_REMOTE, '/tools/dicom-conformance')) > 1000) |
1538 self.assertTrue('orthanctest' in DoGet(_REMOTE, '/modalities')) | |
1539 self.assertTrue('echo' in DoGet(_REMOTE, '/modalities/orthanctest')) | |
1540 self.assertTrue('find' in DoGet(_REMOTE, '/modalities/orthanctest')) | |
1541 self.assertTrue('find-instance' in DoGet(_REMOTE, '/modalities/orthanctest')) | |
1542 self.assertTrue('find-patient' in DoGet(_REMOTE, '/modalities/orthanctest')) | |
1543 self.assertTrue('find-series' in DoGet(_REMOTE, '/modalities/orthanctest')) | |
1544 self.assertTrue('find-study' in DoGet(_REMOTE, '/modalities/orthanctest')) | |
1545 self.assertTrue('store' in DoGet(_REMOTE, '/modalities/orthanctest')) | |
1546 self.assertTrue('store' in DoGet(_REMOTE, '/peers/peer')) | |
1547 self.assertTrue('matlab' in DoGet(_REMOTE, '/instances/%s/frames/0' % a)) | |
79 | 1548 self.assertTrue('raw' in DoGet(_REMOTE, '/instances/%s/frames/0' % a)) |
13 | 1549 self.assertRaises(Exception, lambda: DoGet(_REMOTE, '/tools/nope')) |
28 | 1550 self.assertRaises(Exception, lambda: DoGet(_REMOTE, '/nope')) |
1551 self.assertRaises(Exception, lambda: DoGet(_REMOTE, '/nope/nope.html')) | |
1552 self.assertEqual(404, DoGetRaw(_REMOTE, '/nope')[0].status) | |
1553 self.assertEqual(404, DoGetRaw(_REMOTE, '/nope/nope.html')[0].status) | |
13 | 1554 |
1555 | |
1556 def test_echo(self): | |
1557 DoPost(_REMOTE, '/modalities/orthanctest/echo') | |
1558 | |
1559 | |
1560 def test_xml(self): | |
1561 json = DoGet(_REMOTE, '/tools', headers = { 'accept' : 'application/json' }) | |
1562 xml = minidom.parseString(DoGet(_REMOTE, '/tools', headers = { 'accept' : 'application/xml' })) | |
1563 items = xml.getElementsByTagName('root')[0].getElementsByTagName('item') | |
1564 self.assertEqual(len(items), len(json)) | |
1565 | |
1566 self.assertTrue('dicom-conformance' in json) | |
1567 | |
1568 ok = False | |
1569 for i in items: | |
1570 if i.childNodes[0].data == 'dicom-conformance': | |
1571 ok = True | |
1572 self.assertTrue(ok) | |
1573 | |
1574 | |
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1575 def test_googlecode_issue_16(self): |
13 | 1576 i = UploadInstance(_REMOTE, 'Issue16.dcm')['ID'] |
1577 t = DoGet(_REMOTE, '/instances/%s/tags?simplify' % i)['FrameIncrementPointer'] | |
1578 self.assertEqual('0018,1063', t) | |
1579 | |
1580 | |
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1581 def test_googlecode_issue_22(self): |
13 | 1582 s = UploadInstance(_REMOTE, 'Issue22.dcm')['ID'] |
1583 a = [ | |
1584 "f804691f62197040438f4627c6b994f1", # Frame 0 | |
1585 "c69eee9a51eea3e8611e82e578897254", | |
1586 "315666be83e2d0111c77bc0996d84901", | |
1587 "3e27aa959d911172c48a1436443c72b1", | |
1588 "958642c9e7e9d232d3869faff546058c", | |
1589 "5e7ea8e3e4230cae707d143481355c59", | |
1590 "eda37f83558d858a596175aed8b2ad47", | |
1591 "486713bd2895c4ecbe0e97715ac7f80a", | |
1592 "091ef729eb169e67da8a0faa9631f9a8", | |
1593 "5aa2b8c7ffe0a483efaa8e12417686ca", | |
1594 "e2f39e85896fe58876654b94cd0b5013", | |
1595 "6fd2129e4950abbe1be053bc814d5da8", | |
1596 "c3331a8ba7a757f3d423735ab7fa81f9", | |
1597 "746f808582156734dd6b6fdfd3a0b72c", | |
1598 "8075ea2b227a70c60ea6b7b75a6bb190", | |
1599 "806b8b3e300c615099c11a5ec23465aa", | |
1600 "7c836aa298ba6eef96434579af631a11", | |
1601 "a0357dc9f4f72d73a885c33d7c287446", | |
1602 "f25ba3be1cc7d7fad95706adc199ea7d", | |
1603 "8b114c526b8cbed6cad8a3248b7b480c", | |
1604 "44e6670f127e612a2b4aa60a0d207698", | |
1605 "b8945f90fe02facf2ace24ca1ecbe0a5", | |
1606 "95c796c2fa8f59018b15cf2987b1f79b", | |
1607 "ce0a51ab30224205b44920221dc27351", # Frame 23 | |
1608 ] | |
1609 | |
1610 self.assertEqual(24, len(DoGet(_REMOTE, '/instances/%s/frames' % s))) | |
1611 self.assertRaises(Exception, lambda: DoGet(_REMOTE, '/instances/%s/frames/24/preview' % s)) | |
1612 | |
1613 for i in range(len(a)): | |
1614 self.assertEqual(a[i], ComputeMD5(DoGet(_REMOTE, '/instances/%s/frames/%d/preview' % (s, i)))) | |
1615 | |
1616 | |
46
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1617 def test_googlecode_issue_19(self): |
21
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1618 # This is an image with "YBR_FULL" photometric interpretation, it is not supported by Orthanc |
13 | 1619 # gdcmconv -i /home/jodogne/DICOM/GdcmDatabase/US_DataSet/HDI5000_US/3EAF5E01 -w -o Issue19.dcm |
1620 | |
1621 a = UploadInstance(_REMOTE, 'Issue19.dcm')['ID'] | |
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1622 self.assertRaises(Exception, lambda: DoGet(_REMOTE, '/instances/941ad3c8-05d05b88-560459f9-0eae0e20-6cddd533/preview')) |
13 | 1623 |
1624 | |
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1625 def test_googlecode_issue_37(self): |
13 | 1626 # Same test for issues 35 and 37. Fixed in Orthanc 0.9.1 |
1627 u = UploadInstance(_REMOTE, 'Beaufix/IM-0001-0001.dcm')['ID'] | |
1628 | |
1629 a = DoPost(_REMOTE, '/tools/find', { 'Level' : 'Series', | |
1630 'CaseSensitive' : True, | |
1631 'Query' : { 'StationName' : 'SMR4-MP3' }}) | |
1632 self.assertEqual(1, len(a)) | |
14 | 1633 |
1634 | |
1635 def test_rest_find(self): | |
1636 # Upload 8 instances | |
1637 for i in range(2): | |
1638 UploadInstance(_REMOTE, 'Brainix/Flair/IM-0001-000%d.dcm' % (i + 1)) | |
1639 UploadInstance(_REMOTE, 'Brainix/Epi/IM-0001-000%d.dcm' % (i + 1)) | |
1640 UploadInstance(_REMOTE, 'Knee/T1/IM-0001-000%d.dcm' % (i + 1)) | |
1641 UploadInstance(_REMOTE, 'Knee/T2/IM-0001-000%d.dcm' % (i + 1)) | |
1642 | |
1643 a = DoPost(_REMOTE, '/tools/find', { 'Level' : 'Patient', | |
1644 'CaseSensitive' : False, | |
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1645 'Query' : { 'PatientName' : 'BRAINIX' }}) |
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1646 self.assertEqual(1, len(a)) |
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1647 |
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1648 a = DoPost(_REMOTE, '/tools/find', { 'Level' : 'Patient', |
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1649 'CaseSensitive' : False, |
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1650 'Query' : { 'PatientName' : 'BRAINIX\\KNEE\\NOPE' }}) |
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1651 self.assertEqual(2, len(a)) |
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1652 |
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1653 a = DoPost(_REMOTE, '/tools/find', { 'Level' : 'Patient', |
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1654 'CaseSensitive' : False, |
14 | 1655 'Query' : { 'PatientName' : '*n*' }}) |
1656 self.assertEqual(2, len(a)) | |
1657 | |
1658 a = DoPost(_REMOTE, '/tools/find', { 'Level' : 'Patient', | |
1659 'CaseSensitive' : True, | |
1660 'Query' : { 'PatientName' : '*n*' }}) | |
1661 self.assertEqual(0, len(a)) | |
1662 | |
1663 a = DoPost(_REMOTE, '/tools/find', { 'Expand' : True, | |
1664 'Level' : 'Patient', | |
1665 'CaseSensitive' : False, | |
1666 'Query' : { 'PatientName' : '*ne*' }}) | |
1667 self.assertEqual(1, len(a)) | |
1668 self.assertEqual('20080822', a[0]['MainDicomTags']['PatientBirthDate']) | |
1669 | |
1670 a = DoPost(_REMOTE, '/tools/find', { 'Level' : 'Patient', | |
1671 'CaseSensitive' : True, | |
1672 'Query' : { 'PatientName' : '*ne*' }}) | |
1673 self.assertEqual(0, len(a)) | |
1674 | |
1675 a = DoPost(_REMOTE, '/tools/find', { 'Level' : 'Study', | |
1676 'CaseSensitive' : True, | |
1677 'Query' : { 'PatientName' : '*NE*' }}) | |
1678 self.assertEqual(1, len(a)) | |
1679 | |
1680 a = DoPost(_REMOTE, '/tools/find', { 'Level' : 'Series', | |
1681 'CaseSensitive' : True, | |
1682 'Query' : { 'PatientName' : '*NE*' }}) | |
1683 self.assertEqual(2, len(a)) | |
1684 | |
1685 a = DoPost(_REMOTE, '/tools/find', { 'Level' : 'Instance', | |
1686 'CaseSensitive' : True, | |
1687 'Query' : { 'PatientName' : '*NE*' }}) | |
1688 self.assertEqual(4, len(a)) | |
1689 | |
1690 a = DoPost(_REMOTE, '/tools/find', { 'Level' : 'Patient', 'Query' : { }}) | |
1691 self.assertEqual(2, len(a)) | |
1692 | |
1693 a = DoPost(_REMOTE, '/tools/find', { 'Level' : 'Study', 'Query' : { }}) | |
1694 self.assertEqual(2, len(a)) | |
1695 | |
1696 a = DoPost(_REMOTE, '/tools/find', { 'Level' : 'Series', 'Query' : { }}) | |
1697 self.assertEqual(4, len(a)) | |
1698 | |
1699 a = DoPost(_REMOTE, '/tools/find', { 'Level' : 'Instance', 'Query' : { }}) | |
1700 self.assertEqual(8, len(a)) | |
1701 | |
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1702 a = DoPost(_REMOTE, '/tools/find', { 'Level' : 'Study', |
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1703 'Expand' : True, |
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1704 'Query' : { 'StudyDate' : '20061201-20061201' }}) |
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1705 self.assertEqual(1, len(a)) |
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1706 self.assertEqual('BRAINIX', a[0]['PatientMainDicomTags']['PatientName']) |
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1707 |
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1708 a = DoPost(_REMOTE, '/tools/find', { 'Level' : 'Study', |
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1709 'Expand' : True, |
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1710 'Query' : { 'StudyDate' : '20061201-20091201' }}) |
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1711 self.assertEqual(2, len(a)) |
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1712 for i in range(2): |
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1713 self.assertTrue(a[i]['PatientMainDicomTags']['PatientName'] in ['BRAINIX', 'KNEE']) |
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1714 |
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1715 a = DoPost(_REMOTE, '/tools/find', { 'Level' : 'Study', |
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1716 'Query' : { 'StudyDate' : '20061202-20061202' }}) |
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1717 self.assertEqual(0, len(a)) |
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1718 |
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1719 a = DoPost(_REMOTE, '/tools/find', { 'Level' : 'Study', |
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1720 'Expand' : True, |
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1721 'Query' : { 'StudyDate' : '-20061201' }}) |
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1722 self.assertEqual(1, len(a)) |
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1723 self.assertEqual('BRAINIX', a[0]['PatientMainDicomTags']['PatientName']) |
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1724 |
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1725 a = DoPost(_REMOTE, '/tools/find', { 'Level' : 'Study', |
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1726 'Expand' : True, |
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1727 'Query' : { 'StudyDate' : '-20051201' }}) |
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1728 self.assertEqual(0, len(a)) |
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1729 |
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1730 a = DoPost(_REMOTE, '/tools/find', { 'Level' : 'Study', |
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1731 'Expand' : True, |
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1732 'Query' : { 'StudyDate' : '20061201-' }}) |
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1733 self.assertEqual(2, len(a)) |
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1734 for i in range(2): |
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1735 self.assertTrue(a[i]['PatientMainDicomTags']['PatientName'] in ['BRAINIX', 'KNEE']) |
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1736 |
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1737 a = DoPost(_REMOTE, '/tools/find', { 'Level' : 'Study', |
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1738 'Expand' : True, |
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1739 'Query' : { 'StudyDate' : '20061202-' }}) |
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1740 self.assertEqual(1, len(a)) |
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1741 self.assertEqual('KNEE', a[0]['PatientMainDicomTags']['PatientName']) |
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1742 |
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1743 a = DoPost(_REMOTE, '/tools/find', { 'Level' : 'Study', |
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1744 'Expand' : True, |
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1745 'Query' : { 'StudyDate' : '20080819-' }}) |
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1746 self.assertEqual(1, len(a)) |
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1747 self.assertEqual('KNEE', a[0]['PatientMainDicomTags']['PatientName']) |
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1748 |
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1749 a = DoPost(_REMOTE, '/tools/find', { 'Level' : 'Study', |
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1750 'Expand' : True, |
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1751 'Query' : { 'StudyDate' : '20080820-' }}) |
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1752 self.assertEqual(0, len(a)) |
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1753 |
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1754 |
14 | 1755 |
1756 def test_rest_query_retrieve(self): | |
1757 self.assertEqual(0, len(DoGet(_REMOTE, '/patients'))) | |
1758 | |
1759 # Upload 8 instances | |
1760 for i in range(2): | |
1761 UploadInstance(_REMOTE, 'Brainix/Flair/IM-0001-000%d.dcm' % (i + 1)) | |
1762 UploadInstance(_REMOTE, 'Brainix/Epi/IM-0001-000%d.dcm' % (i + 1)) | |
1763 UploadInstance(_REMOTE, 'Knee/T1/IM-0001-000%d.dcm' % (i + 1)) | |
1764 UploadInstance(_REMOTE, 'Knee/T2/IM-0001-000%d.dcm' % (i + 1)) | |
1765 | |
1766 self.assertEqual(2, len(DoGet(_REMOTE, '/patients'))) | |
1767 for p in DoGet(_REMOTE, '/patients'): | |
1768 DoPost(_REMOTE, '/modalities/orthanctest/store', p) | |
1769 DoDelete(_REMOTE, '/patients/%s' % p) | |
1770 | |
1771 for q in DoGet(_REMOTE, '/queries'): | |
1772 DoDelete(_REMOTE, '/queries/%s' % q) | |
1773 | |
1774 self.assertEqual(0, len(DoGet(_REMOTE, '/patients'))) | |
1775 self.assertEqual(0, len(DoGet(_REMOTE, '/queries'))) | |
1776 a = DoPost(_REMOTE, '/modalities/orthanctest/query', { 'Level' : 'Series', | |
27 | 1777 'Query' : { |
1778 'PatientName' : '*NE*', | |
1779 'StudyDate' : '*', | |
1780 }})['ID'] | |
14 | 1781 self.assertEqual(1, len(DoGet(_REMOTE, '/queries'))) |
1782 | |
1783 b = DoGet(_REMOTE, '/queries/%s' % a) | |
1784 self.assertTrue('answers' in b) | |
1785 self.assertTrue('level' in b) | |
1786 self.assertTrue('modality' in b) | |
1787 self.assertTrue('query' in b) | |
1788 self.assertTrue('retrieve' in b) | |
1789 self.assertEqual('Series', DoGet(_REMOTE, '/queries/%s/level' % a)) | |
1790 self.assertEqual('orthanctest', DoGet(_REMOTE, '/queries/%s/modality' % a)) | |
1791 | |
1792 q = DoGet(_REMOTE, '/queries/%s/query?simplify' % a) | |
27 | 1793 self.assertEqual(2, len(q)) |
14 | 1794 self.assertTrue('PatientName' in q) |
27 | 1795 self.assertTrue('StudyDate' in q) |
14 | 1796 self.assertEqual('*NE*', q['PatientName']) |
27 | 1797 self.assertEqual('*', q['StudyDate']) |
14 | 1798 |
1799 self.assertEqual(2, len(DoGet(_REMOTE, '/queries/%s/answers' % a))) | |
1800 | |
1801 s = DoGet(_REMOTE, '/queries/%s/answers/0' % a) | |
1802 self.assertTrue('content' in s) | |
1803 self.assertTrue('retrieve' in s) | |
1804 | |
1805 s = DoGet(_REMOTE, '/queries/%s/answers/0/content?simplify' % a) | |
1806 self.assertEqual('887', s['PatientID']) | |
1807 self.assertEqual('2.16.840.1.113669.632.20.121711.10000160881', s['StudyInstanceUID']) | |
1808 | |
1809 self.assertEqual(0, len(DoGet(_REMOTE, '/patients'))) | |
1810 DoPost(_REMOTE, '/queries/%s/answers/0/retrieve' % a, 'ORTHANC') | |
1811 self.assertEqual(1, len(DoGet(_REMOTE, '/patients'))) | |
1812 self.assertEqual(1, len(DoGet(_REMOTE, '/studies'))) | |
1813 self.assertEqual(1, len(DoGet(_REMOTE, '/series'))) | |
1814 self.assertEqual(2, len(DoGet(_REMOTE, '/instances'))) | |
1815 | |
112 | 1816 DoPost(_REMOTE, '/queries/%s/answers/1/retrieve' % a, 'ORTHANC', 'application/json') # make sure the issue #36 is fixed (query/retrieve Rest API: /retrieve route shall accept application/json content type) |
14 | 1817 self.assertEqual(1, len(DoGet(_REMOTE, '/patients'))) |
1818 self.assertEqual(1, len(DoGet(_REMOTE, '/studies'))) | |
1819 self.assertEqual(2, len(DoGet(_REMOTE, '/series'))) | |
1820 self.assertEqual(4, len(DoGet(_REMOTE, '/instances'))) | |
1821 | |
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1822 # New in Orthanc 1.4.3 |
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1823 s = DoGet(_REMOTE, '/queries/%s/answers?expand&simplify' % a) |
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1824 self.assertEqual(2, len(s)) |
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1825 for i in range(2): |
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1826 self.assertEqual('SERIES', s[i]['QueryRetrieveLevel']) |
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1827 self.assertEqual('887', s[i]['PatientID']) |
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1828 self.assertEqual('2.16.840.1.113669.632.20.121711.10000160881', s[i]['StudyInstanceUID']) |
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1829 |
14 | 1830 DoDelete(_REMOTE, '/queries/%s' % a) |
1831 self.assertEqual(0, len(DoGet(_REMOTE, '/queries'))) | |
1832 | |
1833 | |
1834 def test_parent(self): | |
1835 u = UploadInstance(_REMOTE, 'DummyCT.dcm')['ID'] | |
1836 patient = '6816cb19-844d5aee-85245eba-28e841e6-2414fae2' | |
1837 study = 'b9c08539-26f93bde-c81ab0d7-bffaf2cb-a4d0bdd0' | |
1838 series = 'f2635388-f01d497a-15f7c06b-ad7dba06-c4c599fe' | |
1839 instance = '66a662ce-7430e543-bad44d47-0dc5a943-ec7a538d' | |
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1840 self.assertEqual(instance, u) |
14 | 1841 |
1842 a = DoGet(_REMOTE, '/studies/%s/patient' % study) | |
1843 self.assertEqual('Patient', a['Type']) | |
1844 self.assertEqual(patient, a['ID']) | |
1845 | |
1846 a = DoGet(_REMOTE, '/series/%s/patient' % series) | |
1847 self.assertEqual('Patient', a['Type']) | |
1848 self.assertEqual(patient, a['ID']) | |
1849 | |
1850 a = DoGet(_REMOTE, '/series/%s/study' % series) | |
1851 self.assertEqual('Study', a['Type']) | |
1852 self.assertEqual(study, a['ID']) | |
1853 | |
1854 a = DoGet(_REMOTE, '/instances/%s/patient' % instance) | |
1855 self.assertEqual('Patient', a['Type']) | |
1856 self.assertEqual(patient, a['ID']) | |
1857 | |
1858 a = DoGet(_REMOTE, '/instances/%s/study' % instance) | |
1859 self.assertEqual('Study', a['Type']) | |
1860 self.assertEqual(study, a['ID']) | |
1861 | |
1862 a = DoGet(_REMOTE, '/instances/%s/series' % instance) | |
1863 self.assertEqual('Series', a['Type']) | |
1864 self.assertEqual(series, a['ID']) | |
1865 | |
1866 | |
1867 def test_shanon(self): | |
1868 def Anonymize(instance, replacements = {}): | |
119 | 1869 return DoPost(_REMOTE, '/instances/%s/anonymize' % instance, { |
1870 'Replace' : replacements, | |
1871 'Force' : True, | |
1872 }, 'application/json') | |
14 | 1873 |
1874 self.assertEqual(0, len(DoGet(_REMOTE, '/instances'))) | |
1875 u = UploadInstance(_REMOTE, 'DummyCT.dcm')['ID'] | |
1876 self.assertEqual(1, len(DoGet(_REMOTE, '/instances'))) | |
1877 | |
1878 tags = [ 'PatientID', 'StudyInstanceUID', 'SeriesInstanceUID', 'SOPInstanceUID', 'DeidentificationMethod' ] | |
1879 ids = [ 'ozp00SjY2xG', | |
1880 '1.2.840.113619.2.176.2025.1499492.7391.1171285944.390', | |
1881 '1.2.840.113619.2.176.2025.1499492.7391.1171285944.394', | |
1882 '1.2.840.113619.2.176.2025.1499492.7040.1171286242.109' ] | |
1883 | |
1884 a = ExtractDicomTags(Anonymize(u), tags) | |
1885 for i in range(4): | |
1886 self.assertNotEqual(ids[i], a[i]) | |
1887 self.assertTrue(a[4].startswith('Orthanc')) | |
1888 | |
1889 a = ExtractDicomTags(Anonymize(u, { 'PatientName' : 'toto' }), tags) | |
1890 for i in range(4): | |
1891 self.assertNotEqual(ids[i], a[i]) | |
1892 self.assertFalse(a[4].startswith('Orthanc')) | |
1893 | |
1894 a = ExtractDicomTags(Anonymize(u, { 'SOPInstanceUID' : 'instance' }), tags) | |
1895 self.assertEqual('instance', a[3]) | |
1896 self.assertFalse(a[4].startswith('Orthanc')) | |
1897 | |
1898 a = ExtractDicomTags(Anonymize(u, { 'SeriesInstanceUID' : 'series' }), tags) | |
1899 self.assertEqual('series', a[2]) | |
1900 self.assertFalse(a[4].startswith('Orthanc')) | |
1901 | |
1902 a = ExtractDicomTags(Anonymize(u, { 'StudyInstanceUID' : 'study' }), tags) | |
1903 self.assertEqual('study', a[1]) | |
1904 self.assertFalse(a[4].startswith('Orthanc')) | |
1905 | |
1906 a = ExtractDicomTags(Anonymize(u, { 'PatientID' : 'patient' }), tags) | |
1907 self.assertEqual('patient', a[0]) | |
1908 self.assertFalse(a[4].startswith('Orthanc')) | |
1909 | |
1910 a = ExtractDicomTags(Anonymize(u, { 'PatientID' : 'patient', | |
1911 'StudyInstanceUID' : 'study', | |
1912 'SeriesInstanceUID' : 'series', | |
1913 'SOPInstanceUID' : 'instance' }), tags) | |
1914 self.assertEqual('patient', a[0]) | |
1915 self.assertFalse(a[4].startswith('Orthanc')) | |
1916 | |
1917 self.assertEqual(1, len(DoGet(_REMOTE, '/instances'))) | |
1918 | |
1919 | |
1920 def test_shanon_2(self): | |
1921 def Modify(instance, replacements = {}): | |
119 | 1922 return DoPost(_REMOTE, '/instances/%s/modify' % instance, { |
1923 'Replace' : replacements, | |
1924 'Force': True, | |
1925 }, 'application/json') | |
14 | 1926 |
1927 self.assertEqual(0, len(DoGet(_REMOTE, '/instances'))) | |
1928 u = UploadInstance(_REMOTE, 'DummyCT.dcm')['ID'] | |
1929 self.assertEqual(1, len(DoGet(_REMOTE, '/instances'))) | |
1930 | |
1931 tags = [ 'PatientID', 'StudyInstanceUID', 'SeriesInstanceUID', 'SOPInstanceUID', 'DeidentificationMethod' ] | |
1932 ids = [ 'ozp00SjY2xG', | |
1933 '1.2.840.113619.2.176.2025.1499492.7391.1171285944.390', | |
1934 '1.2.840.113619.2.176.2025.1499492.7391.1171285944.394', | |
1935 '1.2.840.113619.2.176.2025.1499492.7040.1171286242.109' ] | |
1936 | |
1937 a = ExtractDicomTags(Modify(u), tags) | |
1938 self.assertEqual(ids[0], a[0]) | |
1939 self.assertEqual(ids[1], a[1]) | |
1940 self.assertEqual(ids[2], a[2]) | |
1941 self.assertNotEqual(ids[3], a[3]) | |
1942 self.assertEqual(0, len(a[4])) | |
1943 | |
1944 a = ExtractDicomTags(Modify(u, { 'SOPInstanceUID' : 'instance' }), tags) | |
1945 self.assertEqual(ids[0], a[0]) | |
1946 self.assertEqual(ids[1], a[1]) | |
1947 self.assertEqual(ids[2], a[2]) | |
1948 self.assertEqual('instance', a[3]) | |
1949 | |
1950 a = ExtractDicomTags(Modify(u, { 'SeriesInstanceUID' : 'series' }), tags) | |
1951 self.assertEqual(ids[0], a[0]) | |
1952 self.assertEqual(ids[1], a[1]) | |
1953 self.assertEqual('series', a[2]) | |
1954 self.assertNotEqual(ids[3], a[3]) | |
1955 | |
1956 a = ExtractDicomTags(Modify(u, { 'StudyInstanceUID' : 'study' }), tags) | |
1957 self.assertEqual(ids[0], a[0]) | |
1958 self.assertEqual('study', a[1]) | |
1959 self.assertNotEqual(ids[2], a[2]) | |
1960 self.assertNotEqual(ids[3], a[3]) | |
1961 | |
1962 a = ExtractDicomTags(Modify(u, { 'PatientID' : 'patient' }), tags) | |
1963 self.assertEqual('patient', a[0]) | |
1964 self.assertNotEqual(ids[1], a[1]) | |
1965 self.assertNotEqual(ids[2], a[2]) | |
1966 self.assertNotEqual(ids[3], a[3]) | |
1967 | |
1968 a = ExtractDicomTags(Modify(u, { 'PatientID' : 'patient', | |
1969 'StudyInstanceUID' : 'study', | |
1970 'SeriesInstanceUID' : 'series', | |
1971 'SOPInstanceUID' : 'instance' }), tags) | |
1972 self.assertEqual('patient', a[0]) | |
1973 self.assertEqual('study', a[1]) | |
1974 self.assertEqual('series', a[2]) | |
1975 self.assertEqual('instance', a[3]) | |
1976 | |
1977 self.assertEqual(1, len(DoGet(_REMOTE, '/instances'))) | |
1978 | |
1979 | |
1980 def test_instances_tags(self): | |
1981 a = UploadInstance(_REMOTE, 'Knee/T1/IM-0001-0001.dcm')['ID'] | |
1982 b = UploadInstance(_REMOTE, 'Knee/T2/IM-0001-0001.dcm')['ID'] | |
1983 #a = UploadInstance(_REMOTE, 'Cardiac/MR.X.1.2.276.0.7230010.3.1.4.2831157719.2256.1336386937.676343')['ID'] | |
1984 #b = UploadInstance(_REMOTE, 'Cardiac/MR.X.1.2.276.0.7230010.3.1.4.2831157719.2256.1336386925.676329')['ID'] | |
1985 | |
1986 i = DoGet(_REMOTE, '/patients/%s/instances-tags?simplify' % DoGet(_REMOTE, '/patients')[0]) | |
1987 self.assertEqual(2, len(i)) | |
1988 self.assertEqual('887', i[i.keys()[0]]['PatientID']) | |
1989 self.assertEqual('887', i[i.keys()[1]]['PatientID']) | |
1990 | |
1991 i = DoGet(_REMOTE, '/patients/%s/instances-tags?simplify' % DoGet(_REMOTE, '/studies')[0]) | |
1992 self.assertEqual(2, len(i)) | |
1993 self.assertEqual('887', i[i.keys()[0]]['PatientID']) | |
1994 self.assertEqual('887', i[i.keys()[1]]['PatientID']) | |
1995 | |
1996 self.assertEqual(2, len(DoGet(_REMOTE, '/series'))) | |
1997 i = DoGet(_REMOTE, '/patients/%s/instances-tags?simplify' % DoGet(_REMOTE, '/series')[0]) | |
1998 self.assertEqual(1, len(i)) | |
1999 self.assertEqual('887', i[i.keys()[0]]['PatientID']) | |
2000 | |
2001 i = DoGet(_REMOTE, '/patients/%s/instances-tags?simplify' % DoGet(_REMOTE, '/series')[1]) | |
2002 self.assertEqual(1, len(i)) | |
2003 self.assertEqual('887', i[i.keys()[0]]['PatientID']) | |
2004 | |
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2005 i = DoGet(_REMOTE, '/patients/%s/instances-tags?short' % DoGet(_REMOTE, '/series')[1]) |
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2006 self.assertEqual(1, len(i)) |
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2007 self.assertEqual('887', i[i.keys()[0]]['0010,0020']) |
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2008 |
14 | 2009 |
2010 def test_lookup(self): | |
2011 a = DoPost(_REMOTE, '/tools/lookup', 'ozp00SjY2xG') | |
2012 self.assertEqual(0, len(a)) | |
2013 | |
2014 UploadInstance(_REMOTE, 'DummyCT.dcm') | |
2015 | |
2016 a = DoPost(_REMOTE, '/tools/lookup', 'ozp00SjY2xG') | |
2017 self.assertEqual(1, len(a)) | |
2018 self.assertEqual('Patient', a[0]['Type']) | |
2019 self.assertEqual('6816cb19-844d5aee-85245eba-28e841e6-2414fae2', a[0]['ID']) | |
2020 self.assertEqual('/patients/%s' % a[0]['ID'], a[0]['Path']) | |
2021 | |
2022 a = DoPost(_REMOTE, '/tools/lookup', '1.2.840.113619.2.176.2025.1499492.7391.1171285944.390') | |
2023 self.assertEqual(1, len(a)) | |
2024 self.assertEqual('Study', a[0]['Type']) | |
2025 self.assertEqual('b9c08539-26f93bde-c81ab0d7-bffaf2cb-a4d0bdd0', a[0]['ID']) | |
2026 self.assertEqual('/studies/%s' % a[0]['ID'], a[0]['Path']) | |
2027 | |
2028 a = DoPost(_REMOTE, '/tools/lookup', '1.2.840.113619.2.176.2025.1499492.7391.1171285944.394') | |
2029 self.assertEqual(1, len(a)) | |
2030 self.assertEqual('Series', a[0]['Type']) | |
2031 self.assertEqual('f2635388-f01d497a-15f7c06b-ad7dba06-c4c599fe', a[0]['ID']) | |
2032 self.assertEqual('/series/%s' % a[0]['ID'], a[0]['Path']) | |
2033 | |
2034 a = DoPost(_REMOTE, '/tools/lookup', '1.2.840.113619.2.176.2025.1499492.7040.1171286242.109') | |
2035 self.assertEqual(1, len(a)) | |
2036 self.assertEqual('Instance', a[0]['Type']) | |
2037 self.assertEqual('66a662ce-7430e543-bad44d47-0dc5a943-ec7a538d', a[0]['ID']) | |
2038 self.assertEqual('/instances/%s' % a[0]['ID'], a[0]['Path']) | |
2039 | |
2040 DropOrthanc(_REMOTE) | |
2041 a = DoPost(_REMOTE, '/tools/lookup', '3113719P') | |
2042 self.assertEqual(0, len(a)) | |
2043 | |
15 | 2044 |
2045 def test_autorouting(self): | |
2046 knee1 = 'Knee/T1/IM-0001-0001.dcm' | |
2047 knee2 = 'Knee/T2/IM-0001-0002.dcm' | |
2048 other = 'Brainix/Flair/IM-0001-0001.dcm' | |
2049 | |
2050 # Check that this version is >= 0.8.0 | |
2051 self.assertTrue(IsDefinedInLua(_REMOTE, '_InitializeJob')) | |
2052 self.assertTrue('orthanctest' in DoGet(_REMOTE, '/modalities')) | |
2053 | |
2054 UploadInstance(_REMOTE, knee1) | |
2055 self.assertEqual(0, len(DoGet(_LOCAL, '/instances'))) | |
2056 | |
2057 DropOrthanc(_REMOTE) | |
2058 DropOrthanc(_LOCAL) | |
174 | 2059 InstallLuaScriptFromPath(_REMOTE, 'Lua/Autorouting.lua') |
15 | 2060 UploadInstance(_REMOTE, knee1) |
2061 UploadInstance(_REMOTE, knee2) | |
2062 UploadInstance(_REMOTE, other) | |
2063 WaitEmpty(_REMOTE) | |
174 | 2064 UninstallLuaCallbacks(_REMOTE) |
15 | 2065 self.assertEqual(3, len(DoGet(_LOCAL, '/instances'))) |
2066 | |
2067 DropOrthanc(_REMOTE) | |
2068 DropOrthanc(_LOCAL) | |
174 | 2069 InstallLuaScriptFromPath(_REMOTE, 'Lua/AutoroutingConditional.lua') |
15 | 2070 UploadInstance(_REMOTE, knee1) |
2071 UploadInstance(_REMOTE, knee2) | |
2072 UploadInstance(_REMOTE, other) | |
2073 WaitEmpty(_REMOTE) | |
174 | 2074 UninstallLuaCallbacks(_REMOTE) |
15 | 2075 self.assertEqual(2, len(DoGet(_LOCAL, '/instances'))) |
2076 | |
2077 DropOrthanc(_REMOTE) | |
2078 DropOrthanc(_LOCAL) | |
174 | 2079 InstallLuaScriptFromPath(_REMOTE, 'Lua/AutoroutingModification.lua') |
15 | 2080 UploadInstance(_REMOTE, knee1) |
2081 WaitEmpty(_REMOTE) | |
174 | 2082 UninstallLuaCallbacks(_REMOTE) |
15 | 2083 i = DoGet(_LOCAL, '/instances') |
2084 self.assertEqual(1, len(i)) | |
2085 | |
2086 with tempfile.NamedTemporaryFile(delete = True) as f: | |
2087 f.write(DoGet(_LOCAL, '/instances/%s/file' % i[0])) | |
2088 f.flush() | |
45 | 2089 routed = subprocess.check_output([ FindExecutable('dcm2xml'), f.name ]) |
15 | 2090 self.assertEqual('My Medical Device', re.search('"StationName">(.*?)<', routed).group(1).strip()) |
2091 self.assertEqual(None, re.search('"MilitaryRank"', routed)) | |
2092 self.assertEqual(None, re.search('"0051,0010"', routed)) # A private tag | |
17 | 2093 |
2094 | |
2095 def test_storescu_rf(self): | |
2096 i = UploadInstance(_REMOTE, 'KarstenHilbertRF.dcm')['ID'] | |
2097 self.assertEqual(0, len(DoGet(_LOCAL, '/instances'))) | |
2098 j = DoPost(_REMOTE, '/modalities/orthanctest/store', str(i), 'text/plain') | |
2099 self.assertEqual(1, len(DoGet(_LOCAL, '/instances'))) | |
18 | 2100 |
2101 | |
2102 def test_anonymize_instance(self): | |
2103 def AnonymizeAndUpload(instanceId, parameters): | |
2104 return DoPost(_REMOTE, '/instances', DoPost(_REMOTE, '/instances/%s/anonymize' % instanceId, parameters, | |
2105 'application/json'), 'application/dicom')['ID'] | |
2106 | |
2107 def ModifyAndUpload(instanceId, parameters): | |
2108 return DoPost(_REMOTE, '/instances', DoPost(_REMOTE, '/instances/%s/modify' % instanceId, parameters, | |
2109 'application/json'), 'application/dicom')['ID'] | |
2110 | |
2111 a = UploadInstance(_REMOTE, 'PrivateMDNTags.dcm')['ID'] | |
2112 s1 = DoGet(_REMOTE, '/instances/%s/content/PatientName' % a) | |
2113 s2 = DoGet(_REMOTE, '/instances/%s/content/00e1-10c2' % a) # Some private tag | |
2114 s3 = DoGet(_REMOTE, '/instances/%s/content/StudyDescription' % a) | |
2115 s4 = DoGet(_REMOTE, '/instances/%s/content/SeriesDescription' % a) | |
2116 s5 = DoGet(_REMOTE, '/instances/%s/content/InstitutionName' % a) | |
2117 | |
2118 b = AnonymizeAndUpload(a, '{}') | |
2119 self.assertNotEqual(s1, DoGet(_REMOTE, '/instances/%s/content/PatientName' % b)) | |
2120 self.assertRaises(Exception, lambda: DoGet(_REMOTE, '/instances/%s/content/00e1-10c2' % b)) | |
2121 | |
2122 # Keep private tag (only OK since Orthanc 0.8.0) | |
2123 b = AnonymizeAndUpload(a, '{"Keep":["00e1-10c2"]}') | |
2124 self.assertNotEqual(s1, DoGet(_REMOTE, '/instances/%s/content/PatientName' % b)) | |
2125 self.assertEqual(s2, DoGet(_REMOTE, '/instances/%s/content/00e1-10c2' % b)) | |
2126 | |
2127 b = AnonymizeAndUpload(a, '{"Keep":["00e1,10c2","PatientName"]}') | |
2128 self.assertEqual(s1, DoGet(_REMOTE, '/instances/%s/content/PatientName' % b)) | |
2129 self.assertEqual(s2, DoGet(_REMOTE, '/instances/%s/content/00e1-10c2' % b)) | |
2130 | |
2131 b = AnonymizeAndUpload(a, '{"Keep":["PatientName"],"Replace":{"00e1,10c2":"Hello"}}') | |
2132 self.assertEqual(s1, DoGet(_REMOTE, '/instances/%s/content/PatientName' % b)) | |
2133 self.assertTrue(DoGet(_REMOTE, '/instances/%s/content/00e1-10c2' % b).startswith('Hello')) | |
2134 | |
2135 # Examples from the Wiki | |
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2136 b = AnonymizeAndUpload(a, '{"Replace":{"PatientName":"hello","0010-0020":"world"},"Keep":["StudyDescription", "SeriesDescription"],"KeepPrivateTags": true,"Force":true}') |
18 | 2137 self.assertEqual('hello', DoGet(_REMOTE, '/instances/%s/content/0010-0010' % b).strip()) |
2138 self.assertEqual('world', DoGet(_REMOTE, '/instances/%s/content/PatientID' % b).strip()) | |
2139 self.assertEqual(s3, DoGet(_REMOTE, '/instances/%s/content/0008,1030' % b)) | |
2140 self.assertEqual(s4, DoGet(_REMOTE, '/instances/%s/content/0008,103e' % b)) | |
2141 self.assertEqual(s4, DoGet(_REMOTE, '/instances/%s/content/0008-103E' % b)) | |
2142 self.assertEqual(s2, DoGet(_REMOTE, '/instances/%s/content/00e1-10c2' % b)) | |
2143 DoGet(_REMOTE, '/instances/%s/content/InstitutionName' % a) | |
2144 self.assertRaises(Exception, lambda: DoGet(_REMOTE, '/instances/%s/content/InstitutionName' % b)) | |
2145 | |
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test_bitbucket_issue_55
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diff
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|
2146 b = ModifyAndUpload(a, '{"Replace":{"PatientName":"hello","PatientID":"world"},"Remove":["InstitutionName"],"RemovePrivateTags": true,"Force":true}') |
18 | 2147 self.assertEqual('hello', DoGet(_REMOTE, '/instances/%s/content/0010-0010' % b).strip()) |
2148 self.assertEqual('world', DoGet(_REMOTE, '/instances/%s/content/PatientID' % b).strip()) | |
2149 self.assertEqual(s3, DoGet(_REMOTE, '/instances/%s/content/0008,1030' % b)) | |
2150 self.assertEqual(s4, DoGet(_REMOTE, '/instances/%s/content/0008,103e' % b)) | |
2151 self.assertRaises(Exception, lambda: DoGet(_REMOTE, '/instances/%s/content/00e1-10c2' % b)) | |
2152 self.assertRaises(Exception, lambda: DoGet(_REMOTE, '/instances/%s/content/InstitutionName' % b)) | |
2153 | |
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2154 b = ModifyAndUpload(a, '{"Replace":{"PatientName":"hello","PatientID":"world"},"Force":true}') |
18 | 2155 self.assertEqual('hello', DoGet(_REMOTE, '/instances/%s/content/0010-0010' % b).strip()) |
2156 self.assertEqual('world', DoGet(_REMOTE, '/instances/%s/content/PatientID' % b).strip()) | |
2157 self.assertEqual(s2, DoGet(_REMOTE, '/instances/%s/content/00e1,10c2' % b)) | |
2158 self.assertEqual(s3, DoGet(_REMOTE, '/instances/%s/content/0008,1030' % b)) | |
2159 self.assertEqual(s4, DoGet(_REMOTE, '/instances/%s/content/0008-103E' % b)) | |
2160 self.assertEqual(s5, DoGet(_REMOTE, '/instances/%s/content/InstitutionName' % b)) | |
2161 | |
2162 | |
2163 # Test modify non-existing | |
2164 i = DoPost(_REMOTE, '/tools/create-dicom', | |
2165 json.dumps({ | |
2166 'PatientName' : 'Jodogne', | |
2167 'Modality' : 'CT', | |
2168 }))['ID'] | |
2169 | |
2170 self.assertEqual('Jodogne', DoGet(_REMOTE, '/instances/%s/content/PatientName' % i).strip()) | |
2171 self.assertRaises(Exception, lambda: DoGet(_REMOTE, '/instances/%s/content/StudyDescription' % i)) | |
2172 self.assertEqual('CT', DoGet(_REMOTE, '/instances/%s/content/Modality' % i).strip()) | |
2173 | |
2174 b = ModifyAndUpload(i, '{"Replace":{"StudyDescription":"hello","Modality":"world"}}') | |
2175 self.assertEqual('Jodogne', DoGet(_REMOTE, '/instances/%s/content/PatientName' % b).strip()) | |
2176 self.assertEqual('hello', DoGet(_REMOTE, '/instances/%s/content/StudyDescription' % b).strip()) | |
2177 self.assertEqual('world', DoGet(_REMOTE, '/instances/%s/content/Modality' % b).strip()) | |
2178 | |
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2179 |
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2180 def test_incoming_jpeg(self): |
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test UnknownSopClassAccepted option
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|
2181 def storescu(image, acceptUnknownSopClassUid): |
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|
2182 if acceptUnknownSopClassUid: |
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2183 tmp = [ '-xf', GetDatabasePath('UnknownSopClassUid.cfg'), 'Default' ] |
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|
2184 else: |
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|
2185 tmp = [ '-xs' ] |
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|
2186 |
21
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diff
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|
2187 with open(os.devnull, 'w') as FNULL: |
61
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2188 subprocess.check_call([ FindExecutable('storescu') ] + tmp + |
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2189 [ _REMOTE['Server'], str(_REMOTE['DicomPort']), |
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|
2190 GetDatabasePath(image) ], |
21
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2191 stderr = FNULL) |
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2192 |
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2193 self.assertEqual(0, len(DoGet(_REMOTE, '/patients'))) |
174 | 2194 InstallLuaScriptFromPath(_REMOTE, 'Lua/TransferSyntaxDisable.lua') |
61
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2195 self.assertRaises(Exception, lambda: storescu('Knix/Loc/IM-0001-0001.dcm', False)) |
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2196 self.assertRaises(Exception, lambda: storescu('UnknownSopClassUid.dcm', True)) |
21
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2197 self.assertEqual(0, len(DoGet(_REMOTE, '/patients'))) |
174 | 2198 InstallLuaScriptFromPath(_REMOTE, 'Lua/TransferSyntaxEnable.lua') |
62
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2199 DoPost(_REMOTE, '/tools/execute-script', "print('All special transfer syntaxes are now accepted')") |
61
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|
2200 storescu('Knix/Loc/IM-0001-0001.dcm', False) |
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|
2201 storescu('UnknownSopClassUid.dcm', True) |
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2202 self.assertEqual(2, len(DoGet(_REMOTE, '/patients'))) |
21
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2203 |
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|
2204 |
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|
2205 def test_storescu_jpeg(self): |
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|
2206 self.assertEqual(0, len(DoGet(_REMOTE, '/exports')['Exports'])) |
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|
2207 |
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|
2208 knixStudy = 'b9c08539-26f93bde-c81ab0d7-bffaf2cb-a4d0bdd0' |
64 | 2209 i = UploadInstance(_REMOTE, 'Knix/Loc/IM-0001-0001.dcm')['ID'] |
2210 | |
2211 # This is JPEG lossless | |
136
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2212 self.assertEqual('1.2.840.10008.1.2.4.70', DoGet(_REMOTE, '/instances/%s/header' % i)['0002,0010']['Value']) |
64 | 2213 self.assertEqual('1.2.840.10008.1.2.4.70', DoGet(_REMOTE, '/instances/%s/header?simplify' % i)['TransferSyntaxUID']) |
136
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2214 self.assertEqual('1.2.840.10008.1.2.4.70', DoGet(_REMOTE, '/instances/%s/header?short' % i)['0002,0010']) |
64 | 2215 |
21
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2216 UploadInstance(_REMOTE, 'Knix/Loc/IM-0001-0002.dcm') |
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2217 UploadInstance(_REMOTE, 'Knix/Loc/IM-0001-0003.dcm') |
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2218 |
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2219 a = UploadInstance(_REMOTE, 'Brainix/Flair/IM-0001-0001.dcm')['ID'] |
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2220 b = UploadInstance(_REMOTE, 'ColorTestImageJ.dcm')['ID'] |
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diff
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2221 self.assertEqual(0, len(DoGet(_LOCAL, '/instances'))) |
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2222 DoPost(_REMOTE, '/modalities/orthanctest/store', [ knixStudy, a, b ]) |
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diff
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2223 self.assertEqual(5, len(DoGet(_LOCAL, '/instances'))) |
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diff
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2224 |
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2225 self.assertEqual(3, len(DoGet(_REMOTE, '/exports')['Exports'])) |
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|
2226 |
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|
2227 DropOrthanc(_REMOTE) |
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diff
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|
2228 self.assertEqual(0, len(DoGet(_REMOTE, '/exports')['Exports'])) |
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diff
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|
2229 |
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|
2230 |
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|
2231 def test_pixel_data(self): |
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2232 jpeg = UploadInstance(_REMOTE, 'Knix/Loc/IM-0001-0001.dcm')['ID'] |
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2233 color = UploadInstance(_REMOTE, 'ColorTestImageJ.dcm')['ID'] |
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diff
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|
2234 phenix = UploadInstance(_REMOTE, 'Phenix/IM-0001-0001.dcm')['ID'] |
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|
2235 |
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|
2236 phenixSize = 358 * 512 * 2 |
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diff
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2237 colorSize = 1000 * 1000 * 3 |
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|
2238 jpegSize = 51918 |
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diff
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|
2239 |
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2240 self.assertEqual(1, len(DoGet(_REMOTE, '/instances/%s/content/7fe0-0010' % phenix))) |
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2241 self.assertEqual(1, len(DoGet(_REMOTE, '/instances/%s/content/7fe0-0010' % color))) |
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2242 self.assertEqual(2, len(DoGet(_REMOTE, '/instances/%s/content/7fe0-0010' % jpeg))) |
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2243 |
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2244 self.assertEqual(0, len(DoGet(_REMOTE, '/instances/%s/content/7fe0-0010/0' % jpeg))) |
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2245 self.assertEqual(jpegSize, len(DoGet(_REMOTE, '/instances/%s/content/7fe0-0010/1' % jpeg))) |
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|
2246 |
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|
2247 self.assertEqual(phenixSize, len(DoGet(_REMOTE, '/instances/%s/content/7fe0-0010/0' % phenix))) |
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2248 self.assertEqual(colorSize, len(DoGet(_REMOTE, '/instances/%s/content/7fe0-0010/0' % color))) |
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|
2249 |
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diff
changeset
|
2250 |
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|
2251 def test_decode_brainix(self): |
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|
2252 brainix = [ |
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|
2253 UploadInstance(_REMOTE, 'Brainix/Epi/IM-0001-0001.dcm')['ID'], # (*) |
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|
2254 UploadInstance(_REMOTE, 'Formats/JpegLossless.dcm')['ID'], # JPEG-LS, same as (*) (since Orthanc 0.7.6) |
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|
2255 UploadInstance(_REMOTE, 'Formats/Jpeg.dcm')['ID'], # JPEG, same as (*) (since Orthanc 0.7.6) |
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|
2256 ] |
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|
2257 h = '6fb11b932d535c2be04beabd99793ff8' |
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|
2258 maxValue = 426.0 |
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|
2259 |
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2260 truth = Image.open(GetDatabasePath('Formats/Brainix.png')) |
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|
2261 for i in brainix: |
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2262 self.AssertSameImages(truth.getdata(), '/instances/%s/image-int16' % i) |
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2263 self.AssertSameImages(truth.getdata(), '/instances/%s/image-uint16' % i) |
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|
2264 |
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2265 truth2 = map(lambda x: min(255, x), truth.getdata()) |
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|
2266 for i in brainix: |
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2267 self.AssertSameImages(truth2, '/instances/%s/image-uint8' % i) |
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|
2268 |
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|
2269 truth2 = map(lambda x: x * 255.0 / maxValue, truth.getdata()) |
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|
2270 for i in brainix: |
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|
2271 self.AssertSameImages(truth2, '/instances/%s/preview' % i) |
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|
2272 |
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|
2273 for i in brainix: |
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|
2274 self.assertEqual(h, ComputeMD5(DoGet(_REMOTE, '/instances/%s/matlab' % i))) |
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|
2275 |
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|
2276 |
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|
2277 def test_decode_color(self): |
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2278 imagej = UploadInstance(_REMOTE, 'ColorTestImageJ.dcm')['ID'] |
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2279 color = UploadInstance(_REMOTE, 'ColorTestMalaterre.dcm')['ID'] |
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|
2280 |
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|
2281 for i in [ imagej, color ]: |
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|
2282 for j in [ 'image-uint8', 'image-uint16', 'image-int16' ]: |
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|
2283 self.assertRaises(Exception, lambda: DoGet(_REMOTE, '/instances/%s/%s' % (i, j))) |
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|
2284 |
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|
2285 self.assertEqual('c14c687f7a1ea9fe022479fc87c67274', ComputeMD5(DoGet(_REMOTE, '/instances/%s/preview' % imagej))) |
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|
2286 self.assertEqual('a87d122918a56f803bcfe9d2586b9125', ComputeMD5(DoGet(_REMOTE, '/instances/%s/preview' % color))) |
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|
2287 |
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|
2288 self.assertEqual('30cc46bfa7aba77a40e4178f6184c25a', ComputeMD5(DoGet(_REMOTE, '/instances/%s/matlab' % imagej))) |
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2289 self.assertEqual('ff195005cef06b59666fd220a9b4cd9a', ComputeMD5(DoGet(_REMOTE, '/instances/%s/matlab' % color))) |
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|
2290 |
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|
2291 |
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|
2292 def test_decode_rf(self): |
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tests of image decoding
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2293 rf = UploadInstance(_REMOTE, 'KarstenHilbertRF.dcm')['ID'] |
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parents:
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2294 truth = Image.open(GetDatabasePath('Formats/KarstenHilbertRF.png')) |
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|
2295 |
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diff
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|
2296 self.AssertSameImages(truth.getdata(), '/instances/%s/image-uint8' % rf) |
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diff
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|
2297 self.AssertSameImages(truth.getdata(), '/instances/%s/image-uint16' % rf) |
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diff
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|
2298 self.AssertSameImages(truth.getdata(), '/instances/%s/image-int16' % rf) |
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diff
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|
2299 self.AssertSameImages(truth.getdata(), '/instances/%s/preview' % rf) |
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|
2300 |
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changeset
|
2301 self.assertEqual('42254d70efd2f4a1b8f3455909689f0e', ComputeMD5(DoGet(_REMOTE, '/instances/%s/matlab' % rf))) |
2a29bcff60a7
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Sebastien Jodogne <s.jodogne@gmail.com>
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diff
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|
2302 |
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Sebastien Jodogne <s.jodogne@gmail.com>
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18
diff
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|
2303 |
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Sebastien Jodogne <s.jodogne@gmail.com>
parents:
18
diff
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|
2304 def test_decode_multiframe(self): |
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parents:
18
diff
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|
2305 mf = UploadInstance(_REMOTE, 'Multiframe.dcm')['ID'] |
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parents:
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diff
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|
2306 |
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|
2307 # Test the first frame |
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parents:
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diff
changeset
|
2308 truth = Image.open(GetDatabasePath('Formats/Multiframe0.png')) |
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parents:
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diff
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|
2309 self.AssertSameImages(truth.getdata(), '/instances/%s/image-uint8' % mf) |
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parents:
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diff
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|
2310 self.AssertSameImages(truth.getdata(), '/instances/%s/image-uint16' % mf) |
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diff
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|
2311 self.AssertSameImages(truth.getdata(), '/instances/%s/image-int16' % mf) |
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18
diff
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|
2312 self.AssertSameImages(truth.getdata(), '/instances/%s/preview' % mf) |
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parents:
18
diff
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|
2313 self.assertEqual('9812b99d93bbcd4e7684ded089b5dfb3', ComputeMD5(DoGet(_REMOTE, '/instances/%s/matlab' % mf))) |
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Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
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|
2314 |
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diff
changeset
|
2315 self.AssertSameImages(truth.getdata(), '/instances/%s/frames/0/image-uint16' % mf) |
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Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
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|
2316 |
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|
2317 # Test the last frame |
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18
diff
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|
2318 truth = Image.open(GetDatabasePath('Formats/Multiframe75.png')) |
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parents:
18
diff
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|
2319 self.AssertSameImages(truth.getdata(), '/instances/%s/frames/75/image-uint16' % mf) |
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diff
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|
2320 |
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Sebastien Jodogne <s.jodogne@gmail.com>
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18
diff
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|
2321 |
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|
2322 def test_decode_signed(self): |
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Sebastien Jodogne <s.jodogne@gmail.com>
parents:
18
diff
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|
2323 signed = UploadInstance(_REMOTE, 'SignedCT.dcm')['ID'] |
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Sebastien Jodogne <s.jodogne@gmail.com>
parents:
18
diff
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|
2324 minValue = -2000 |
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Sebastien Jodogne <s.jodogne@gmail.com>
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18
diff
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|
2325 maxValue = 4042 |
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diff
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|
2326 |
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diff
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|
2327 truth = Image.open(GetDatabasePath('Formats/SignedCT.png')) |
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parents:
18
diff
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|
2328 self.AssertSameImages(truth.getdata(), '/instances/%s/image-int16' % signed) |
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parents:
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diff
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|
2329 |
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diff
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|
2330 truth2 = map(lambda x: 0 if x >= 32768 else x, truth.getdata()) |
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Sebastien Jodogne <s.jodogne@gmail.com>
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diff
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|
2331 self.AssertSameImages(truth2, '/instances/%s/image-uint16' % signed) |
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Sebastien Jodogne <s.jodogne@gmail.com>
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diff
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|
2332 |
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2333 truth3 = map(lambda x: 255 if x >= 256 else x, truth2) |
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Sebastien Jodogne <s.jodogne@gmail.com>
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18
diff
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|
2334 self.AssertSameImages(truth3, '/instances/%s/image-uint8' % signed) |
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Sebastien Jodogne <s.jodogne@gmail.com>
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18
diff
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|
2335 |
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Sebastien Jodogne <s.jodogne@gmail.com>
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18
diff
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|
2336 tmp = map(lambda x: x - 65536 if x >= 32768 else x, truth.getdata()) |
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parents:
18
diff
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|
2337 tmp = map(lambda x: (255.0 * (x - minValue)) / (maxValue - minValue), tmp) |
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Sebastien Jodogne <s.jodogne@gmail.com>
parents:
18
diff
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|
2338 self.AssertSameImages(tmp, '/instances/%s/preview' % signed) |
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Sebastien Jodogne <s.jodogne@gmail.com>
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18
diff
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|
2339 |
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Sebastien Jodogne <s.jodogne@gmail.com>
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diff
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|
2340 self.assertEqual('b57e6c872a3da50877c7da689b03a444', ComputeMD5(DoGet(_REMOTE, '/instances/%s/matlab' % signed))) |
22 | 2341 |
2342 | |
46
85b2e36ed392
explicit GoogleCode source
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
45
diff
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|
2343 def test_googlecode_issue_32(self): |
92
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diff
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2344 self.assertRaises(Exception, lambda: DoPut(_REMOTE, '/tools/default-encoding', 'nope')) |
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diff
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|
2345 self.assertEqual('Windows1251', DoPut(_REMOTE, '/tools/default-encoding', 'Windows1251')) |
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diff
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|
2346 self.assertEqual('Windows1251', DoGet(_REMOTE, '/tools/default-encoding')) |
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parents:
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diff
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|
2347 |
22 | 2348 f = UploadInstance(_REMOTE, 'Issue32.dcm')['ID'] |
2349 tags = DoGet(_REMOTE, '/instances/%s/tags?simplify' % f) | |
2350 self.assertEqual(u'Рентгенография', tags['SeriesDescription']) | |
2351 self.assertEqual(u'Таз', tags['BodyPartExamined']) | |
2352 self.assertEqual(u'Прямая', tags['ViewPosition']) | |
2353 | |
92
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parents:
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diff
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|
2354 # Replay the same test using Latin1 as default encoding: This must fail |
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Sebastien Jodogne <s.jodogne@gmail.com>
parents:
89
diff
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|
2355 self.assertEqual('Latin1', DoPut(_REMOTE, '/tools/default-encoding', 'Latin1')) |
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Sebastien Jodogne <s.jodogne@gmail.com>
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diff
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|
2356 |
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|
2357 DoDelete(_REMOTE, '/instances/%s' % f) |
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diff
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|
2358 f = UploadInstance(_REMOTE, 'Issue32.dcm')['ID'] |
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Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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|
2359 tags = DoGet(_REMOTE, '/instances/%s/tags?simplify' % f) |
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Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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|
2360 self.assertNotEqual(u'Рентгенография', tags['SeriesDescription']) |
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diff
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|
2361 |
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|
2362 |
22 | 2363 def test_encodings(self): |
23 | 2364 # Latin-1 (ISO_IR 100) |
22 | 2365 brainix = UploadInstance(_REMOTE, 'Brainix/Epi/IM-0001-0001.dcm')['ID'] |
2366 tags = DoGet(_REMOTE, '/instances/%s/tags?simplify' % brainix) | |
2367 self.assertEqual(u'IRM cérébrale, neuro-crâne', tags['StudyDescription']) | |
23 | 2368 |
2369 # Latin-2 (ISO_IR 101) | |
2370 a = UploadInstance(_REMOTE, 'MarekLatin2.dcm')['ID'] | |
2371 i = DoGet(_REMOTE, '/instances/%s/simplified-tags' % a) | |
2372 # dcm2xml MarekLatin2.dcm | iconv -f latin2 -t utf-8 | xmllint --format - | |
2373 self.assertEqual('Imię i Nazwisko osoby opisującej', | |
2374 i['ContentSequence'][4]['ConceptNameCodeSequence'][0]['CodeMeaning'].encode('utf-8')) | |
2375 | |
26
040f6ef1394a
test_storescu_custom_aet
Sebastien Jodogne <s.jodogne@gmail.com>
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diff
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|
2376 |
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test_storescu_custom_aet
Sebastien Jodogne <s.jodogne@gmail.com>
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23
diff
changeset
|
2377 def test_storescu_custom_aet(self): |
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test_storescu_custom_aet
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parents:
23
diff
changeset
|
2378 # This tests a feature introduced in Orthanc 0.9.1: "Custom |
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Sebastien Jodogne <s.jodogne@gmail.com>
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diff
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|
2379 # setting of the local AET during C-Store SCU (both in Lua and |
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diff
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|
2380 # in the REST API)." |
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test_storescu_custom_aet
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parents:
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diff
changeset
|
2381 # https://groups.google.com/forum/#!msg/orthanc-users/o5qMULformU/wZjW2iSaMcAJ |
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Sebastien Jodogne <s.jodogne@gmail.com>
parents:
23
diff
changeset
|
2382 |
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test_storescu_custom_aet
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
23
diff
changeset
|
2383 self.assertEqual(0, len(DoGet(_LOCAL, '/patients'))) |
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test_storescu_custom_aet
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parents:
23
diff
changeset
|
2384 |
040f6ef1394a
test_storescu_custom_aet
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
23
diff
changeset
|
2385 a = UploadInstance(_REMOTE, 'Knee/T1/IM-0001-0001.dcm') |
040f6ef1394a
test_storescu_custom_aet
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parents:
23
diff
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|
2386 b = UploadInstance(_REMOTE, 'Knee/T1/IM-0001-0002.dcm') |
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23
diff
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|
2387 c = UploadInstance(_REMOTE, 'Knee/T1/IM-0001-0003.dcm') |
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test_storescu_custom_aet
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diff
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|
2388 |
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diff
changeset
|
2389 j = DoPost(_REMOTE, '/modalities/orthanctest/store', { |
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test_storescu_custom_aet
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diff
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2390 'LocalAet' : 'YOP', |
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diff
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|
2391 'Resources' : [ a['ID'], b['ID'] ] |
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diff
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|
2392 }) |
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diff
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|
2393 |
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diff
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|
2394 self.assertEqual(2, len(DoGet(_LOCAL, '/instances'))) |
040f6ef1394a
test_storescu_custom_aet
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diff
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2395 self.assertEqual('YOP', DoGet(_LOCAL, '/instances/%s/metadata/RemoteAET' % a['ID'])) |
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|
2396 |
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test_storescu_custom_aet
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diff
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|
2397 DropOrthanc(_LOCAL) |
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test_storescu_custom_aet
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diff
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|
2398 self.assertEqual(0, len(DoGet(_LOCAL, '/instances'))) |
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test_storescu_custom_aet
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diff
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|
2399 |
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diff
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|
2400 j = DoPost(_REMOTE, '/modalities/orthanctest/store', { |
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diff
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2401 'Resources' : [ c['ID'] ] |
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diff
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|
2402 }) |
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|
2403 |
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test_storescu_custom_aet
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diff
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|
2404 self.assertEqual(1, len(DoGet(_LOCAL, '/instances'))) |
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test_storescu_custom_aet
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diff
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2405 self.assertEqual('ORTHANC', DoGet(_LOCAL, '/instances/%s/metadata/RemoteAET' % c['ID'])) |
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diff
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|
2406 |
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diff
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|
2407 DropOrthanc(_REMOTE) |
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diff
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|
2408 DropOrthanc(_LOCAL) |
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diff
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|
2409 |
174 | 2410 InstallLuaScriptFromPath(_REMOTE, 'Lua/AutoroutingChangeAet.lua') |
26
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diff
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|
2411 DoPost(_REMOTE, '/tools/execute-script', 'aet = "HELLO"', 'application/lua') |
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diff
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|
2412 |
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diff
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2413 self.assertEqual(0, len(DoGet(_LOCAL, '/instances'))) |
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test_storescu_custom_aet
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diff
changeset
|
2414 UploadInstance(_REMOTE, 'Knee/T1/IM-0001-0001.dcm') |
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test_storescu_custom_aet
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2415 WaitEmpty(_REMOTE) |
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test_storescu_custom_aet
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2416 self.assertEqual(1, len(DoGet(_LOCAL, '/instances'))) |
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test_storescu_custom_aet
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2417 self.assertEqual('HELLO', DoGet(_LOCAL, '/instances/%s/metadata/RemoteAET' % a['ID'])) |
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test_storescu_custom_aet
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2418 |
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test_storescu_custom_aet
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2419 DoPost(_REMOTE, '/tools/execute-script', 'aet = nill', 'application/lua') |
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test_storescu_custom_aet
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2420 UploadInstance(_REMOTE, 'Knee/T1/IM-0001-0002.dcm') |
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test_storescu_custom_aet
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2421 WaitEmpty(_REMOTE) |
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test_storescu_custom_aet
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diff
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2422 self.assertEqual(2, len(DoGet(_LOCAL, '/instances'))) |
040f6ef1394a
test_storescu_custom_aet
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diff
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2423 self.assertEqual('ORTHANC', DoGet(_LOCAL, '/instances/%s/metadata/RemoteAET' % b['ID'])) |
34
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2424 |
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2425 def test_resources_since_limit(self): |
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2426 # Upload 16 instances |
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2427 for i in range(4): |
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2428 UploadInstance(_REMOTE, 'Brainix/Flair/IM-0001-000%d.dcm' % (i + 1)) |
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2429 UploadInstance(_REMOTE, 'Brainix/Epi/IM-0001-000%d.dcm' % (i + 1)) |
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2430 UploadInstance(_REMOTE, 'Knee/T1/IM-0001-000%d.dcm' % (i + 1)) |
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2431 UploadInstance(_REMOTE, 'Knee/T2/IM-0001-000%d.dcm' % (i + 1)) |
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2432 |
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2433 self.assertEqual(2, len(DoGet(_REMOTE, '/patients'))) |
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2434 self.assertEqual(2, len(DoGet(_REMOTE, '/studies'))) |
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2435 self.assertEqual(4, len(DoGet(_REMOTE, '/series'))) |
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2436 self.assertEqual(16, len(DoGet(_REMOTE, '/instances'))) |
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2437 |
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2438 self.assertRaises(Exception, lambda: DoGet(_REMOTE, '/patients&since=10' % i)) |
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2439 self.assertRaises(Exception, lambda: DoGet(_REMOTE, '/patients&limit=10' % i)) |
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2440 |
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2441 self.assertEqual(0, len(DoGet(_REMOTE, '/patients?since=0&limit=0'))) |
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2442 self.assertEqual(2, len(DoGet(_REMOTE, '/patients?since=0&limit=100'))) |
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2443 self.assertEqual(2, len(DoGet(_REMOTE, '/studies?since=0&limit=100'))) |
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2444 self.assertEqual(4, len(DoGet(_REMOTE, '/series?since=0&limit=100'))) |
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2445 self.assertEqual(16, len(DoGet(_REMOTE, '/instances?since=0&limit=100'))) |
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2446 self.assertEqual(1, len(DoGet(_REMOTE, '/patients?since=1&limit=100'))) |
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2447 self.assertEqual(0, len(DoGet(_REMOTE, '/patients?since=2&limit=100'))) |
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2448 self.assertEqual(0, len(DoGet(_REMOTE, '/patients?since=3&limit=100'))) |
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2449 self.assertEqual(1, len(DoGet(_REMOTE, '/studies?since=1&limit=100'))) |
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2450 self.assertEqual(3, len(DoGet(_REMOTE, '/series?since=1&limit=100'))) |
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2451 self.assertEqual(2, len(DoGet(_REMOTE, '/series?since=2&limit=100'))) |
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2452 self.assertEqual(1, len(DoGet(_REMOTE, '/series?since=3&limit=100'))) |
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2453 self.assertEqual(0, len(DoGet(_REMOTE, '/series?since=4&limit=100'))) |
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2454 self.assertEqual(0, len(DoGet(_REMOTE, '/series?since=100&limit=100'))) |
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2455 self.assertEqual(15, len(DoGet(_REMOTE, '/instances?since=1&limit=100'))) |
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|
2456 |
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parents:
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diff
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|
2457 for limit in [ 1, 2, 3, 7, 16, 17 ]: |
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|
2458 s = {} |
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|
2459 since = 0 |
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diff
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|
2460 while True: |
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diff
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|
2461 t = DoGet(_REMOTE, '/instances?since=%d&limit=%d' % (since, limit)) |
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diff
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|
2462 if len(t) == 0: |
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diff
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|
2463 break |
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diff
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|
2464 |
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|
2465 since += len(t) |
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diff
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|
2466 for i in t: |
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|
2467 s[i] = None |
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diff
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|
2468 |
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|
2469 self.assertEqual(16, len(s)) |
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|
2470 for instance in DoGet(_REMOTE, '/instances'): |
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|
2471 self.assertTrue(instance in s) |
36 | 2472 |
2473 | |
2474 def test_create_pdf(self): | |
2475 # Upload 4 instances | |
2476 brainixInstance = UploadInstance(_REMOTE, 'Brainix/Flair/IM-0001-0001.dcm')['ID'] | |
2477 UploadInstance(_REMOTE, 'Brainix/Epi/IM-0001-0001.dcm') | |
2478 UploadInstance(_REMOTE, 'Knee/T1/IM-0001-0001.dcm') | |
2479 UploadInstance(_REMOTE, 'Knee/T2/IM-0001-0001.dcm') | |
2480 | |
2481 brainixPatient = '16738bc3-e47ed42a-43ce044c-a3414a45-cb069bd0' | |
2482 brainixStudy = '27f7126f-4f66fb14-03f4081b-f9341db2-53925988' | |
2483 brainixEpi = '2ac1316d-3e432022-62eabff2-c59f5475-9b1ac3f8' | |
2484 | |
2485 with open(GetDatabasePath('HelloWorld.pdf'), 'rb') as f: | |
2486 pdf = f.read() | |
2487 | |
2488 i = DoPost(_REMOTE, '/tools/create-dicom', | |
2489 json.dumps({ | |
2490 'Tags' : { | |
2491 'PatientName' : 'Jodogne', | |
2492 'Modality' : 'CT', | |
2493 }, | |
2494 'Content' : 'data:application/pdf;base64,' + base64.b64encode(pdf) | |
2495 })) | |
2496 | |
2497 self.assertEqual('Jodogne', DoGet(_REMOTE, '/instances/%s/content/PatientName' % i['ID']).strip()) | |
2498 self.assertEqual('OT', DoGet(_REMOTE, '/instances/%s/content/Modality' % i['ID']).strip()) | |
2499 | |
2500 b = DoGet(_REMOTE, '/instances/%s/content/0042-0011' % i['ID']) | |
2501 self.assertEqual(len(b), len(pdf) + 1) | |
2502 self.assertEqual(ComputeMD5(b), ComputeMD5(pdf + '\0')) | |
2503 | |
2504 self.assertRaises(Exception, lambda: DoPost(_REMOTE, '/tools/create-dicom', | |
2505 json.dumps({ | |
2506 'Parent' : brainixPatient, | |
2507 'Tags' : { | |
2508 'PatientName' : 'Jodogne', | |
2509 } | |
2510 }))) | |
2511 | |
2512 i = DoPost(_REMOTE, '/tools/create-dicom', | |
2513 json.dumps({ | |
2514 'Parent' : brainixPatient, | |
2515 'Tags' : { 'StudyDescription' : 'PDF^Patient' }, | |
2516 'Content' : 'data:application/pdf;base64,' + base64.b64encode(pdf) | |
2517 })) | |
2518 | |
2519 self.assertEqual(brainixPatient, DoGet(_REMOTE, '/instances/%s/patient' % i['ID'])['ID']) | |
2520 | |
2521 i = DoPost(_REMOTE, '/tools/create-dicom', | |
2522 json.dumps({ | |
2523 'Parent' : brainixStudy, | |
2524 'Tags' : { 'SeriesDescription' : 'PDF^Study' }, | |
2525 'Content' : 'data:application/pdf;base64,' + base64.b64encode(pdf) | |
2526 })) | |
2527 | |
2528 self.assertEqual(brainixStudy, DoGet(_REMOTE, '/instances/%s/study' % i['ID'])['ID']) | |
2529 | |
2530 i = DoPost(_REMOTE, '/tools/create-dicom', | |
2531 json.dumps({ | |
2532 'Parent' : brainixEpi, | |
37 | 2533 'Tags' : { 'SpecificCharacterSet' : 'ISO_IR 13' }, |
36 | 2534 'Content' : 'data:application/pdf;base64,' + base64.b64encode(pdf) |
2535 })) | |
2536 | |
2537 self.assertEqual(brainixEpi, DoGet(_REMOTE, '/instances/%s/series' % i['ID'])['ID']) | |
2538 | |
2539 b = DoGet(_REMOTE, '/instances/%s/pdf' % i['ID']) | |
2540 self.assertEqual(len(b), len(pdf)) | |
2541 self.assertEqual(ComputeMD5(b), ComputeMD5(pdf)) | |
2542 | |
2543 self.assertRaises(Exception, lambda: DoGet(_REMOTE, '/instances/%s/pdf' % brainixInstance)) | |
38 | 2544 |
2545 | |
2546 def test_create_series(self): | |
2547 i = DoPost(_REMOTE, '/tools/create-dicom', | |
2548 json.dumps({ | |
2549 'Tags' : { | |
40 | 2550 'SpecificCharacterSet' : 'ISO_IR 100', |
2551 'PatientName' : 'Sébastien Jodogne', | |
38 | 2552 'Modality' : 'CT', |
2553 }, | |
2554 'Content' : [ | |
40 | 2555 { |
2556 'Content': 'data:image/png;base64,iVBORw0KGgoAAAANSUhEUgAAAAUAAAAFCAYAAACNbyblAAAAHElEQVQI12P4//8/w38GIAXDIBKE0DHxgljNBAAO9TXL0Y4OHwAAAABJRU5ErkJggg==', # red dot in RGBA | |
2557 'Tags' : { 'ImageComments' : 'Tutu' } | |
2558 }, | |
38 | 2559 'data:image/png;base64,iVBORw0KGgoAAAANSUhEUgAAABAAAAAQCAYAAAAf8/9hAAAAoUlEQVQ4jZ2SWw3EIBREjwUsYAELa2EtoAULFUCyXAtroRZqoRbox254BdLC/DZnZjoXWJFgCDg8egW2CBEhEnDzyRk+Ecxz2KP/0AL8S99T+jQccAVs22qKwAuPuq0uyNg9cPLh3am+pe/dkHLZtqJHj6vXJrZ7nvzvxxgemXgUwnGfXqpee09mUwp8m022OYP6bLF7mVuVe0y/umxinsAXRd9z0k1ubWsAAAAASUVORK5CYII=', |
2560 ] | |
2561 })) | |
2562 | |
2563 s = DoGet(_REMOTE, i['Path']) | |
2564 self.assertEqual('Series', s['Type']) | |
2565 self.assertEqual(s['ID'], i['ID']) | |
2566 self.assertEqual(2, len(s['Instances'])) | |
39 | 2567 self.assertEqual(2, s['ExpectedNumberOfInstances']) |
2568 self.assertEqual('Complete', s['Status']) | |
40 | 2569 |
2570 a = DoGet(_REMOTE, '/instances/%s/tags?simplify' % s['Instances'][0]) | |
2571 b = DoGet(_REMOTE, '/instances/%s/tags?simplify' % s['Instances'][1]) | |
2572 self.assertTrue('ImageComments' in a or 'ImageComments' in b) | |
2573 if 'ImageComments' in a: | |
2574 self.assertEqual('Tutu', a['ImageComments']) | |
2575 else: | |
2576 self.assertEqual('Tutu', b['ImageComments']) | |
2577 | |
2578 patient = DoGet(_REMOTE, '/instances/%s/patient' % s['Instances'][0]) | |
2579 self.assertEqual(patient['MainDicomTags']['PatientName'].encode('utf-8'), | |
2580 'Sébastien Jodogne') | |
47 | 2581 |
2582 | |
2583 def test_create_binary(self): | |
2584 binary = ''.join(map(chr, range(256))) | |
2585 encoded = 'data:application/octet-stream;base64,' + base64.b64encode(binary) | |
2586 tags = { | |
2587 'PatientName' : 'Jodogne', | |
2588 '8899-8899' : encoded | |
2589 } | |
2590 | |
2591 i = DoPost(_REMOTE, '/tools/create-dicom', | |
2592 json.dumps({ | |
2593 'Tags' : tags | |
2594 })) | |
2595 | |
2596 self.assertEqual('Jodogne', DoGet(_REMOTE, '/instances/%s/content/PatientName' % i['ID']).strip()) | |
2597 self.assertEqual(binary, DoGet(_REMOTE, '/instances/%s/content/8899-8899' % i['ID']).strip()) | |
2598 | |
2599 i = DoPost(_REMOTE, '/tools/create-dicom', | |
2600 json.dumps({ | |
2601 'InterpretBinaryTags' : False, | |
2602 'Tags' : tags | |
2603 })) | |
2604 | |
2605 self.assertEqual('Jodogne', DoGet(_REMOTE, '/instances/%s/content/PatientName' % i['ID']).strip()) | |
2606 self.assertEqual(encoded, DoGet(_REMOTE, '/instances/%s/content/8899-8899' % i['ID'])[0:-1]) | |
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2607 |
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2608 |
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2609 def test_patient_ids_collision(self): |
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2610 # Upload 3 instances from 3 different studies, but with the |
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2611 # same PatientID |
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2612 for i in range(3): |
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2613 UploadInstance(_REMOTE, 'PatientIdsCollision/Image%d.dcm' % (i + 1)) |
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2614 |
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2615 a = DoPost(_REMOTE, '/tools/find', { 'Level' : 'Patient', |
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test_patient_ids_collision
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
47
diff
changeset
|
2616 'Query' : { 'PatientName' : '*' }}) |
e4352463ff74
test_patient_ids_collision
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
47
diff
changeset
|
2617 self.assertEqual(1, len(a)) |
e4352463ff74
test_patient_ids_collision
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
47
diff
changeset
|
2618 self.assertEqual('COMMON', DoGet(_REMOTE, '/patients/%s' % a[0]) ['MainDicomTags']['PatientID']) |
e4352463ff74
test_patient_ids_collision
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
47
diff
changeset
|
2619 |
e4352463ff74
test_patient_ids_collision
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
47
diff
changeset
|
2620 a = DoPost(_REMOTE, '/tools/find', { 'Level' : 'Study', |
e4352463ff74
test_patient_ids_collision
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
47
diff
changeset
|
2621 'CaseSensitive' : True, |
e4352463ff74
test_patient_ids_collision
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
47
diff
changeset
|
2622 'Query' : { 'PatientName' : 'FOO\\HELLO' }}) |
e4352463ff74
test_patient_ids_collision
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
47
diff
changeset
|
2623 self.assertEqual(2, len(a)) |
e4352463ff74
test_patient_ids_collision
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
47
diff
changeset
|
2624 |
e4352463ff74
test_patient_ids_collision
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
47
diff
changeset
|
2625 a = DoPost(_REMOTE, '/tools/find', { 'Level' : 'Series', |
e4352463ff74
test_patient_ids_collision
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
47
diff
changeset
|
2626 'CaseSensitive' : False, |
e4352463ff74
test_patient_ids_collision
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
47
diff
changeset
|
2627 'Query' : { 'PatientName' : 'Foo' }}) |
e4352463ff74
test_patient_ids_collision
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
47
diff
changeset
|
2628 self.assertEqual(1, len(a)) |
e4352463ff74
test_patient_ids_collision
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
47
diff
changeset
|
2629 self.assertEqual('FOO^SERIES', DoGet(_REMOTE, '/series/%s/study' % a[0]) ['MainDicomTags']['StudyDescription']) |
e4352463ff74
test_patient_ids_collision
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
47
diff
changeset
|
2630 self.assertEqual('FOO', DoGet(_REMOTE, '/series/%s/study' % a[0]) ['PatientMainDicomTags']['PatientName']) |
e4352463ff74
test_patient_ids_collision
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
47
diff
changeset
|
2631 self.assertEqual('COMMON', DoGet(_REMOTE, '/series/%s/study' % a[0]) ['PatientMainDicomTags']['PatientID']) |
e4352463ff74
test_patient_ids_collision
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
47
diff
changeset
|
2632 |
e4352463ff74
test_patient_ids_collision
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
47
diff
changeset
|
2633 a = DoPost(_REMOTE, '/tools/find', { 'Level' : 'Study', |
e4352463ff74
test_patient_ids_collision
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
47
diff
changeset
|
2634 'Query' : { 'PatientName' : '*' }}) |
e4352463ff74
test_patient_ids_collision
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
47
diff
changeset
|
2635 self.assertEqual(3, len(a)) |
e4352463ff74
test_patient_ids_collision
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
47
diff
changeset
|
2636 d = map(lambda x: DoGet(_REMOTE, '/studies/%s' % x) ['MainDicomTags']['StudyDescription'], a) |
e4352463ff74
test_patient_ids_collision
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
47
diff
changeset
|
2637 self.assertTrue('FOO^SERIES' in d) |
e4352463ff74
test_patient_ids_collision
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
47
diff
changeset
|
2638 self.assertTrue('HELLO^SERIES' in d) |
e4352463ff74
test_patient_ids_collision
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
47
diff
changeset
|
2639 self.assertTrue('WORLD^SERIES' in d) |
e4352463ff74
test_patient_ids_collision
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
47
diff
changeset
|
2640 |
e4352463ff74
test_patient_ids_collision
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
47
diff
changeset
|
2641 d = map(lambda x: DoGet(_REMOTE, '/studies/%s' % x) ['PatientMainDicomTags']['PatientID'], a) |
e4352463ff74
test_patient_ids_collision
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
47
diff
changeset
|
2642 self.assertEqual(1, len(set(d))) |
e4352463ff74
test_patient_ids_collision
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
47
diff
changeset
|
2643 self.assertEqual('COMMON', d[0]) |
e4352463ff74
test_patient_ids_collision
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
47
diff
changeset
|
2644 |
e4352463ff74
test_patient_ids_collision
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
47
diff
changeset
|
2645 for i in a: |
e4352463ff74
test_patient_ids_collision
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
47
diff
changeset
|
2646 d = DoGet(_REMOTE, '/studies/%s' % i) ['MainDicomTags']['StudyDescription'] |
e4352463ff74
test_patient_ids_collision
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
47
diff
changeset
|
2647 p = DoGet(_REMOTE, '/studies/%s' % i) ['PatientMainDicomTags']['PatientName'] |
e4352463ff74
test_patient_ids_collision
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
47
diff
changeset
|
2648 self.assertEqual('%s^SERIES' % p, d) |
49
e7f9b8199545
test_bitbucket_issue_4
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
48
diff
changeset
|
2649 |
e7f9b8199545
test_bitbucket_issue_4
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
48
diff
changeset
|
2650 |
e7f9b8199545
test_bitbucket_issue_4
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
48
diff
changeset
|
2651 def test_bitbucket_issue_4(self): |
e7f9b8199545
test_bitbucket_issue_4
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
48
diff
changeset
|
2652 UploadInstance(_REMOTE, 'Brainix/Epi/IM-0001-0001.dcm') |
e7f9b8199545
test_bitbucket_issue_4
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
48
diff
changeset
|
2653 UploadInstance(_REMOTE, 'Brainix/Epi/IM-0001-0002.dcm') |
e7f9b8199545
test_bitbucket_issue_4
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
48
diff
changeset
|
2654 UploadInstance(_REMOTE, 'Brainix/Epi/IM-0001-0003.dcm') |
e7f9b8199545
test_bitbucket_issue_4
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
48
diff
changeset
|
2655 UploadInstance(_REMOTE, 'Formats/Jpeg.dcm') |
e7f9b8199545
test_bitbucket_issue_4
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
48
diff
changeset
|
2656 UploadInstance(_REMOTE, 'Formats/JpegLossless.dcm') |
e7f9b8199545
test_bitbucket_issue_4
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
48
diff
changeset
|
2657 UploadInstance(_REMOTE, 'Formats/Rle.dcm') |
e7f9b8199545
test_bitbucket_issue_4
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
48
diff
changeset
|
2658 |
e7f9b8199545
test_bitbucket_issue_4
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
48
diff
changeset
|
2659 self.assertEqual(0, len(DoGet(_LOCAL, '/instances'))) |
e7f9b8199545
test_bitbucket_issue_4
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
48
diff
changeset
|
2660 self.assertEqual(6, len(DoGet(_REMOTE, '/instances'))) |
e7f9b8199545
test_bitbucket_issue_4
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
48
diff
changeset
|
2661 |
e7f9b8199545
test_bitbucket_issue_4
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
48
diff
changeset
|
2662 p = DoGet(_REMOTE, '/patients') |
e7f9b8199545
test_bitbucket_issue_4
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
48
diff
changeset
|
2663 self.assertEqual(2, len(p)) |
e7f9b8199545
test_bitbucket_issue_4
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
48
diff
changeset
|
2664 i1 = map(lambda x: x['ID'], DoGet(_REMOTE, '/patients/%s/instances' % p[0])) |
e7f9b8199545
test_bitbucket_issue_4
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
48
diff
changeset
|
2665 i2 = map(lambda x: x['ID'], DoGet(_REMOTE, '/patients/%s/instances' % p[1])) |
e7f9b8199545
test_bitbucket_issue_4
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
48
diff
changeset
|
2666 self.assertEqual(3, len(i1)) |
e7f9b8199545
test_bitbucket_issue_4
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
48
diff
changeset
|
2667 self.assertEqual(3, len(i2)) |
e7f9b8199545
test_bitbucket_issue_4
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
48
diff
changeset
|
2668 |
e7f9b8199545
test_bitbucket_issue_4
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
48
diff
changeset
|
2669 j = DoPost(_REMOTE, '/modalities/orthanctest/store', i2[0:1] + i1 + i2[1:3]) |
e7f9b8199545
test_bitbucket_issue_4
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
48
diff
changeset
|
2670 |
e7f9b8199545
test_bitbucket_issue_4
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
48
diff
changeset
|
2671 self.assertEqual(6, len(DoGet(_LOCAL, '/instances'))) |
50
8de63d56cf11
test_create_sequence
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
49
diff
changeset
|
2672 |
8de63d56cf11
test_create_sequence
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
49
diff
changeset
|
2673 |
8de63d56cf11
test_create_sequence
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
49
diff
changeset
|
2674 def test_create_sequence(self): |
8de63d56cf11
test_create_sequence
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
49
diff
changeset
|
2675 i = DoPost(_REMOTE, '/tools/create-dicom', |
8de63d56cf11
test_create_sequence
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
49
diff
changeset
|
2676 json.dumps({ |
8de63d56cf11
test_create_sequence
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
49
diff
changeset
|
2677 'Tags' : { |
8de63d56cf11
test_create_sequence
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
49
diff
changeset
|
2678 'SpecificCharacterSet': 'ISO_IR 100', # Encode using Latin1 |
8de63d56cf11
test_create_sequence
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
49
diff
changeset
|
2679 'PatientName': 'Jodogne^', |
51
264a20a0276d
test_modify_sequence
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
50
diff
changeset
|
2680 'ReferencedStudySequence': GenerateTestSequence(), |
50
8de63d56cf11
test_create_sequence
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
49
diff
changeset
|
2681 } |
8de63d56cf11
test_create_sequence
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
49
diff
changeset
|
2682 }))['ID'] |
8de63d56cf11
test_create_sequence
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
49
diff
changeset
|
2683 |
8de63d56cf11
test_create_sequence
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
49
diff
changeset
|
2684 self.assertEqual('Jodogne^', DoGet(_REMOTE, '/instances/%s/content/PatientName' % i)) |
8de63d56cf11
test_create_sequence
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
49
diff
changeset
|
2685 self.assertEqual('Hello^', DoGet(_REMOTE, '/instances/%s/content/ReferencedStudySequence/0/StudyDescription' % i)) |
8de63d56cf11
test_create_sequence
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
49
diff
changeset
|
2686 self.assertEqual('Toto', DoGet(_REMOTE, '/instances/%s/content/ReferencedStudySequence/0/ReferencedStudySequence/0/StudyDescription' % i)) |
8de63d56cf11
test_create_sequence
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
49
diff
changeset
|
2687 self.assertEqual('Tata', DoGet(_REMOTE, '/instances/%s/content/ReferencedStudySequence/0/ReferencedStudySequence/1/StudyDescription' % i)) |
8de63d56cf11
test_create_sequence
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
49
diff
changeset
|
2688 self.assertEqual(u'Sébastien^'.encode('latin-1'), |
8de63d56cf11
test_create_sequence
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
49
diff
changeset
|
2689 DoGet(_REMOTE, '/instances/%s/content/ReferencedStudySequence/1/StudyDescription' % i)) |
51
264a20a0276d
test_modify_sequence
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
50
diff
changeset
|
2690 |
264a20a0276d
test_modify_sequence
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
50
diff
changeset
|
2691 |
264a20a0276d
test_modify_sequence
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
50
diff
changeset
|
2692 def test_modify_sequence(self): |
264a20a0276d
test_modify_sequence
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
50
diff
changeset
|
2693 i = UploadInstance(_REMOTE, 'PrivateTags.dcm')['ID'] |
264a20a0276d
test_modify_sequence
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
50
diff
changeset
|
2694 self.assertRaises(Exception, lambda: DoGet(_REMOTE, '/instances/%s/content/ReferencedStudySequence' % i)) |
264a20a0276d
test_modify_sequence
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
50
diff
changeset
|
2695 |
264a20a0276d
test_modify_sequence
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
50
diff
changeset
|
2696 j = DoPost(_REMOTE, '/instances/%s/modify' % i, |
264a20a0276d
test_modify_sequence
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
50
diff
changeset
|
2697 json.dumps({ |
264a20a0276d
test_modify_sequence
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
50
diff
changeset
|
2698 "Replace" : { |
264a20a0276d
test_modify_sequence
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
50
diff
changeset
|
2699 "PatientName" : "hello", |
264a20a0276d
test_modify_sequence
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
50
diff
changeset
|
2700 'ReferencedStudySequence': GenerateTestSequence(), |
264a20a0276d
test_modify_sequence
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
50
diff
changeset
|
2701 }, |
264a20a0276d
test_modify_sequence
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
50
diff
changeset
|
2702 }), |
264a20a0276d
test_modify_sequence
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
50
diff
changeset
|
2703 'application/json') |
264a20a0276d
test_modify_sequence
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
50
diff
changeset
|
2704 j = DoPost(_REMOTE, '/instances', j, 'application/dicom')['ID'] |
264a20a0276d
test_modify_sequence
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
50
diff
changeset
|
2705 DoDelete(_REMOTE, '/instances/%s' % i) |
264a20a0276d
test_modify_sequence
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
50
diff
changeset
|
2706 |
52 | 2707 self.assertEqual(2, len(DoGet(_REMOTE, '/instances/%s/content/ReferencedStudySequence' % j))) |
2708 | |
2709 | |
2710 def test_compression(self): | |
2711 i = UploadInstance(_REMOTE, 'DummyCT.dcm')['ID'] | |
2712 | |
2713 data = DoGetRaw(_REMOTE, '/instances/%s/attachments/dicom-as-json/data' % i)[1] | |
2714 | |
2715 # "StorageCompression" is enabled in the Orthanc to be tested, | |
2716 # uncompress the data before running the test | |
2717 if DoGet(_REMOTE, '/instances/%s/attachments/dicom-as-json/is-compressed' % i) != 0: | |
2718 DoPost(_REMOTE, '/instances/%s/attachments/dicom-as-json/uncompress' % i) | |
2719 | |
2720 cs = DoGet(_REMOTE, '/statistics')['TotalDiskSize'] | |
2721 us = DoGet(_REMOTE, '/statistics')['TotalUncompressedSize'] | |
2722 size = DoGet(_REMOTE, '/instances/%s/attachments/dicom-as-json/size' % i) | |
2723 md5 = DoGet(_REMOTE, '/instances/%s/attachments/dicom-as-json/md5' % i) | |
2724 self.assertEqual(data, DoGetRaw(_REMOTE, '/instances/%s/attachments/dicom-as-json/compressed-data' % i)[1]) | |
2725 self.assertEqual(md5, DoGet(_REMOTE, '/instances/%s/attachments/dicom-as-json/compressed-md5' % i)) | |
2726 self.assertEqual(size, DoGet(_REMOTE, '/instances/%s/attachments/dicom-as-json/compressed-size' % i)) | |
2727 | |
2728 ops = DoGet(_REMOTE, '/instances/%s/attachments/dicom-as-json' % i) | |
2729 self.assertTrue('compress' in ops) | |
2730 self.assertTrue('uncompress' in ops) | |
2731 self.assertTrue('is-compressed' in ops) | |
2732 self.assertEqual(0, DoGet(_REMOTE, '/instances/%s/attachments/dicom-as-json/is-compressed' % i)) | |
2733 DoPost(_REMOTE, '/instances/%s/attachments/dicom-as-json/verify-md5' % i) | |
2734 | |
2735 DoPost(_REMOTE, '/instances/%s/attachments/dicom-as-json/compress' % i) | |
2736 DoPost(_REMOTE, '/instances/%s/attachments/dicom-as-json/verify-md5' % i) | |
2737 self.assertEqual(1, DoGet(_REMOTE, '/instances/%s/attachments/dicom-as-json/is-compressed' % i)) | |
2738 self.assertLess(cs, DoGet(_REMOTE, '/statistics')['TotalDiskSize']) | |
2739 self.assertEqual(us, DoGet(_REMOTE, '/statistics')['TotalUncompressedSize']) | |
2740 self.assertGreater(len(data), len(DoGetRaw(_REMOTE, '/instances/%s/attachments/dicom-as-json/compressed-data' % i)[1])) | |
2741 self.assertGreater(size, DoGet(_REMOTE, '/instances/%s/attachments/dicom-as-json/compressed-size' % i)) | |
2742 self.assertEqual(size, DoGet(_REMOTE, '/instances/%s/attachments/dicom-as-json/size' % i)) | |
2743 self.assertEqual(md5, DoGet(_REMOTE, '/instances/%s/attachments/dicom-as-json/md5' % i)) | |
2744 self.assertNotEqual(md5, DoGet(_REMOTE, '/instances/%s/attachments/dicom-as-json/compressed-md5' % i)) | |
2745 | |
2746 DoPost(_REMOTE, '/instances/%s/attachments/dicom-as-json/uncompress' % i) | |
2747 DoPost(_REMOTE, '/instances/%s/attachments/dicom-as-json/verify-md5' % i) | |
2748 self.assertEqual(0, DoGet(_REMOTE, '/instances/%s/attachments/dicom-as-json/is-compressed' % i)) | |
2749 self.assertEqual(data, DoGetRaw(_REMOTE, '/instances/%s/attachments/dicom-as-json/compressed-data' % i)[1]) | |
2750 self.assertEqual(size, DoGet(_REMOTE, '/instances/%s/attachments/dicom-as-json/compressed-size' % i)) | |
2751 self.assertEqual(size, DoGet(_REMOTE, '/instances/%s/attachments/dicom-as-json/size' % i)) | |
2752 self.assertEqual(md5, DoGet(_REMOTE, '/instances/%s/attachments/dicom-as-json/md5' % i)) | |
2753 self.assertEqual(md5, DoGet(_REMOTE, '/instances/%s/attachments/dicom-as-json/compressed-md5' % i)) | |
2754 self.assertEqual(cs, DoGet(_REMOTE, '/statistics')['TotalDiskSize']) | |
2755 self.assertEqual(us, DoGet(_REMOTE, '/statistics')['TotalUncompressedSize']) | |
53 | 2756 |
2757 | |
2758 def test_ordered_slices(self): | |
2759 i = UploadInstance(_REMOTE, 'Multiframe.dcm')['ID'] | |
2760 s = DoGet(_REMOTE, '/instances/%s' % i)['ParentSeries'] | |
2761 o = DoGet(_REMOTE, '/series/%s/ordered-slices' % s) | |
2762 self.assertEqual('Sequence', o['Type']) | |
2763 self.assertEqual(1, len(o['Dicom'])) | |
2764 self.assertEqual('/instances/9e05eb0a-18b6268c-e0d36085-8ddab517-3b5aec02/file', o['Dicom'][0]) | |
2765 self.assertEqual(76, len(o['Slices'])) | |
2766 for j in range(76): | |
2767 self.assertEqual('/instances/9e05eb0a-18b6268c-e0d36085-8ddab517-3b5aec02/frames/%d' % j, o['Slices'][j]) | |
2768 | |
68 | 2769 self.assertEqual(1, len(o['SlicesShort'])) |
2770 self.assertEqual('9e05eb0a-18b6268c-e0d36085-8ddab517-3b5aec02', o['SlicesShort'][0][0]) | |
2771 self.assertEqual(0, o['SlicesShort'][0][1]) | |
2772 self.assertEqual(76, o['SlicesShort'][0][2]) | |
2773 | |
53 | 2774 i = UploadInstance(_REMOTE, 'Brainix/Epi/IM-0001-0001.dcm')['ID'] |
2775 j = UploadInstance(_REMOTE, 'Brainix/Epi/IM-0001-0002.dcm')['ID'] | |
2776 k = UploadInstance(_REMOTE, 'Brainix/Epi/IM-0001-0003.dcm')['ID'] | |
2777 s = DoGet(_REMOTE, '/instances/%s' % i)['ParentSeries'] | |
2778 o = DoGet(_REMOTE, '/series/%s/ordered-slices' % s) | |
2779 | |
2780 self.assertEqual('Volume', o['Type']) | |
2781 self.assertEqual(3, len(o['Dicom'])) | |
2782 self.assertEqual(3, len(o['Slices'])) | |
2783 self.assertEqual('/instances/%s/file' % i, o['Dicom'][2]) | |
2784 self.assertEqual('/instances/%s/file' % j, o['Dicom'][1]) | |
2785 self.assertEqual('/instances/%s/file' % k, o['Dicom'][0]) | |
2786 self.assertEqual('/instances/%s/frames/0' % i, o['Slices'][2]) | |
2787 self.assertEqual('/instances/%s/frames/0' % j, o['Slices'][1]) | |
2788 self.assertEqual('/instances/%s/frames/0' % k, o['Slices'][0]) | |
2789 | |
68 | 2790 self.assertEqual(3, len(o['SlicesShort'])) |
2791 self.assertEqual(k, o['SlicesShort'][0][0]) | |
2792 self.assertEqual(0, o['SlicesShort'][0][1]) | |
2793 self.assertEqual(1, o['SlicesShort'][0][2]) | |
2794 self.assertEqual(j, o['SlicesShort'][1][0]) | |
2795 self.assertEqual(0, o['SlicesShort'][1][1]) | |
2796 self.assertEqual(1, o['SlicesShort'][1][2]) | |
2797 self.assertEqual(i, o['SlicesShort'][2][0]) | |
2798 self.assertEqual(0, o['SlicesShort'][2][1]) | |
2799 self.assertEqual(1, o['SlicesShort'][2][2]) | |
2800 | |
53 | 2801 i = UploadInstance(_REMOTE, 'Beaufix/IM-0001-0001.dcm')['ID'] |
2802 j = UploadInstance(_REMOTE, 'Beaufix/IM-0001-0002.dcm')['ID'] | |
2803 s = DoGet(_REMOTE, '/instances/%s' % i)['ParentSeries'] | |
2804 o = DoGet(_REMOTE, '/series/%s/ordered-slices' % s) | |
2805 | |
2806 self.assertEqual('Sequence', o['Type']) | |
2807 self.assertEqual(2, len(o['Dicom'])) | |
2808 self.assertEqual(2, len(o['Slices'])) | |
2809 self.assertEqual('/instances/%s/file' % i, o['Dicom'][0]) | |
2810 self.assertEqual('/instances/%s/file' % j, o['Dicom'][1]) | |
2811 self.assertEqual('/instances/%s/frames/0' % i, o['Slices'][0]) | |
2812 self.assertEqual('/instances/%s/frames/0' % j, o['Slices'][1]) | |
54
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diff
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2813 |
68 | 2814 self.assertEqual(2, len(o['SlicesShort'])) |
2815 self.assertEqual(i, o['SlicesShort'][0][0]) | |
2816 self.assertEqual(0, o['SlicesShort'][0][1]) | |
2817 self.assertEqual(1, o['SlicesShort'][0][2]) | |
2818 self.assertEqual(j, o['SlicesShort'][1][0]) | |
2819 self.assertEqual(0, o['SlicesShort'][1][1]) | |
2820 self.assertEqual(1, o['SlicesShort'][1][2]) | |
2821 | |
2822 | |
54
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diff
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|
2823 |
c5f8a6b0d85e
test_incoming_movescu_accession
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diff
changeset
|
2824 def test_incoming_movescu_accession(self): |
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test_incoming_movescu_accession
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diff
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|
2825 UploadInstance(_REMOTE, 'Knee/T1/IM-0001-0001.dcm') |
c5f8a6b0d85e
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2826 |
137
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2827 # No matching patient, so no job is created |
54
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2828 self.assertEqual(0, len(DoGet(_LOCAL, '/patients'))) |
c5f8a6b0d85e
test_incoming_movescu_accession
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diff
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2829 CallMoveScu([ '--study', '-k', '0008,0052=STUDY', '-k', 'AccessionNumber=nope' ]) |
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diff
changeset
|
2830 self.assertEqual(0, len(DoGet(_LOCAL, '/patients'))) |
c5f8a6b0d85e
test_incoming_movescu_accession
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53
diff
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|
2831 CallMoveScu([ '--study', '-k', '0008,0052=PATIENT', '-k', 'AccessionNumber=A10003245599' ]) |
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test_incoming_movescu_accession
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parents:
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diff
changeset
|
2832 self.assertEqual(0, len(DoGet(_LOCAL, '/patients'))) |
137
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2833 |
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changeset
|
2834 # 1 Matching patient, track the job |
138 | 2835 self.assertTrue(MonitorJob(_REMOTE, lambda: CallMoveScu([ |
2836 '--study', | |
2837 '-k', '0008,0052=STUDY', | |
2838 '-k', 'AccessionNumber=A10003245599' | |
2839 ]))) | |
137
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|
2840 |
54
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parents:
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diff
changeset
|
2841 self.assertEqual(1, len(DoGet(_LOCAL, '/patients'))) |
c5f8a6b0d85e
test_incoming_movescu_accession
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diff
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|
2842 |
55 | 2843 |
2844 def test_dicom_to_json(self): | |
2845 i = UploadInstance(_REMOTE, 'PrivateMDNTags.dcm')['ID'] | |
60
cd3c7f70f139
test backward compatibility with Orthanc 0.9.4
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59
diff
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|
2846 j = UploadInstance(_REMOTE, 'PrivateTags.dcm')['ID'] |
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test backward compatibility with Orthanc 0.9.4
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|
2847 |
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diff
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|
2848 t = DoGet(_REMOTE, '/instances/%s/tags?simplify' % i) |
cd3c7f70f139
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diff
changeset
|
2849 with open(GetDatabasePath('PrivateMDNTagsSimplify.json'), 'r') as f: |
80
8466dbfcb22b
fix test against dcmtk 3.6.1
Sebastien Jodogne <s.jodogne@gmail.com>
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diff
changeset
|
2850 self.assertTrue(CompareTags(t, json.loads(f.read()), [ |
123 | 2851 # Tags for compatibility with DCMTK 3.6.0 |
2852 'RETIRED_OtherPatientIDs', | |
2853 'OtherPatientIDs', | |
2854 'ACR_NEMA_2C_VariablePixelDataGroupLength', | |
80
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fix test against dcmtk 3.6.1
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|
2855 ])) |
55 | 2856 |
2857 t = DoGet(_REMOTE, '/instances/%s/tags' % i) | |
2858 with open(GetDatabasePath('PrivateMDNTagsFull.json'), 'r') as f: | |
87
4b24faec842b
test_reconstruct_json2 + test_private_tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
86
diff
changeset
|
2859 self.assertTrue(CompareTags(t, json.loads(f.read()), [ |
4b24faec842b
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diff
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|
2860 ])) |
55 | 2861 |
60
cd3c7f70f139
test backward compatibility with Orthanc 0.9.4
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59
diff
changeset
|
2862 t = DoGet(_REMOTE, '/instances/%s/tags?simplify' % j) |
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test backward compatibility with Orthanc 0.9.4
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diff
changeset
|
2863 with open(GetDatabasePath('PrivateTagsSimplify.json'), 'r') as f: |
80
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fix test against dcmtk 3.6.1
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79
diff
changeset
|
2864 self.assertTrue(CompareTags(t, json.loads(f.read()), [ |
8466dbfcb22b
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Sebastien Jodogne <s.jodogne@gmail.com>
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diff
changeset
|
2865 ])) |
60
cd3c7f70f139
test backward compatibility with Orthanc 0.9.4
Sebastien Jodogne <s.jodogne@gmail.com>
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59
diff
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|
2866 |
cd3c7f70f139
test backward compatibility with Orthanc 0.9.4
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diff
changeset
|
2867 t = DoGet(_REMOTE, '/instances/%s/tags' % j) |
cd3c7f70f139
test backward compatibility with Orthanc 0.9.4
Sebastien Jodogne <s.jodogne@gmail.com>
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diff
changeset
|
2868 with open(GetDatabasePath('PrivateTagsFull.json'), 'r') as f: |
cd3c7f70f139
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Sebastien Jodogne <s.jodogne@gmail.com>
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diff
changeset
|
2869 a = json.loads(f.read()) |
65
09fc27e0899a
patch for testing windows builds
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
64
diff
changeset
|
2870 aa = json.dumps(a).replace('2e+022', '2e+22') |
09fc27e0899a
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diff
changeset
|
2871 tt = json.dumps(t).replace('2e+022', '2e+22') |
09fc27e0899a
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diff
changeset
|
2872 self.assertEqual(aa, tt) |
57 | 2873 |
2874 | |
2875 def test_batch_archive(self): | |
2876 UploadInstance(_REMOTE, 'Knee/T1/IM-0001-0001.dcm') | |
2877 UploadInstance(_REMOTE, 'Knee/T1/IM-0001-0002.dcm') | |
2878 UploadInstance(_REMOTE, 'Knee/T2/IM-0001-0001.dcm') | |
2879 UploadInstance(_REMOTE, 'Knee/T2/IM-0001-0002.dcm') | |
2880 UploadInstance(_REMOTE, 'Brainix/Epi/IM-0001-0001.dcm') | |
2881 UploadInstance(_REMOTE, 'Brainix/Epi/IM-0001-0002.dcm') | |
2882 UploadInstance(_REMOTE, 'Brainix/Flair/IM-0001-0001.dcm') | |
2883 UploadInstance(_REMOTE, 'Brainix/Flair/IM-0001-0002.dcm') | |
2884 | |
2885 s = DoPost(_REMOTE, '/tools/create-archive', [ ]) | |
2886 z = zipfile.ZipFile(StringIO(s), "r") | |
2887 self.assertEqual(0, len(z.namelist())) | |
2888 | |
2889 # One patient | |
2890 s = DoPost(_REMOTE, '/tools/create-archive', [ 'ca29faea-b6a0e17f-067743a1-8b778011-a48b2a17' ]) | |
2891 z = zipfile.ZipFile(StringIO(s), "r") | |
2892 self.assertEqual(4, len(z.namelist())) | |
2893 | |
2894 # One patient + twice its study + one series from other patient | |
2895 s = DoPost(_REMOTE, '/tools/create-archive', [ | |
2896 'ca29faea-b6a0e17f-067743a1-8b778011-a48b2a17', | |
2897 '0a9b3153-2512774b-2d9580de-1fc3dcf6-3bd83918', | |
2898 '1e2c125c-411b8e86-3f4fe68e-a7584dd3-c6da78f0' | |
2899 ]) | |
2900 z = zipfile.ZipFile(StringIO(s), "r") | |
2901 self.assertEqual(6, len(z.namelist())) | |
2902 | |
2903 # One patient + one series + one instance | |
2904 s = DoPost(_REMOTE, '/tools/create-archive', [ | |
2905 'ca29faea-b6a0e17f-067743a1-8b778011-a48b2a17', | |
2906 '1e2c125c-411b8e86-3f4fe68e-a7584dd3-c6da78f0', | |
2907 '1d429ccb-bdcc78a1-7d129d6a-ba4966ed-fe4dbd87' | |
2908 ]) | |
2909 z = zipfile.ZipFile(StringIO(s), "r") | |
2910 self.assertEqual(7, len(z.namelist())) | |
59
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diff
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|
2911 |
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58
diff
changeset
|
2912 |
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test_decode_brainix_as_jpeg
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parents:
58
diff
changeset
|
2913 def test_decode_brainix_as_jpeg(self): |
84378ada15ab
test_decode_brainix_as_jpeg
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parents:
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diff
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|
2914 i = UploadInstance(_REMOTE, 'Brainix/Epi/IM-0001-0001.dcm')['ID'] |
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|
2915 |
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58
diff
changeset
|
2916 j = GetImage(_REMOTE, '/instances/%s/preview' % i) |
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diff
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|
2917 self.assertEqual('PNG', j.format) |
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diff
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|
2918 self.assertEqual(j.size[0], 256) |
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58
diff
changeset
|
2919 self.assertEqual(j.size[1], 256) |
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diff
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|
2920 |
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|
2921 j = GetImage(_REMOTE, '/instances/%s/preview' % i, headers = { 'Accept' : '*/*' }) |
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|
2922 self.assertEqual('PNG', j.format) |
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|
2923 |
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changeset
|
2924 j = GetImage(_REMOTE, '/instances/%s/preview' % i, headers = { 'Accept' : 'image/*' }) |
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|
2925 self.assertEqual('PNG', j.format) |
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|
2926 |
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changeset
|
2927 j = GetImage(_REMOTE, '/instances/%s/preview' % i, headers = { 'Accept' : 'image/png' }) |
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|
2928 self.assertEqual('PNG', j.format) |
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|
2929 |
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changeset
|
2930 j = GetImage(_REMOTE, '/instances/%s/preview' % i, headers = { 'Accept' : 'image/jpeg' }) |
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|
2931 self.assertEqual('JPEG', j.format) |
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|
2932 self.assertEqual(j.size[0], 256) |
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changeset
|
2933 self.assertEqual(j.size[1], 256) |
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|
2934 |
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|
2935 a = len(DoGet(_REMOTE, '/instances/%s/preview?quality=50' % i, headers = { 'Accept' : 'image/jpeg' })) |
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|
2936 b = len(DoGet(_REMOTE, '/instances/%s/preview' % i, headers = { 'Accept' : 'image/jpeg' })) |
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|
2937 self.assertLess(a, b) |
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|
2938 |
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|
2939 j = GetImage(_REMOTE, '/instances/%s/image-uint8' % i, headers = { 'Accept' : 'image/jpeg' }) |
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changeset
|
2940 self.assertEqual('JPEG', j.format) |
84378ada15ab
test_decode_brainix_as_jpeg
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
58
diff
changeset
|
2941 |
84378ada15ab
test_decode_brainix_as_jpeg
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
58
diff
changeset
|
2942 # 16bit encoding is not supported with JPEG |
84378ada15ab
test_decode_brainix_as_jpeg
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
58
diff
changeset
|
2943 self.assertRaises(Exception, lambda: GetImage(_REMOTE, '/instances/%s/image-uint16' % i, headers = { 'Accept' : 'image/jpeg' })) |
84378ada15ab
test_decode_brainix_as_jpeg
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
58
diff
changeset
|
2944 self.assertRaises(Exception, lambda: GetImage(_REMOTE, '/instances/%s/image-int16' % i, headers = { 'Accept' : 'image/jpeg' })) |
84378ada15ab
test_decode_brainix_as_jpeg
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
58
diff
changeset
|
2945 |
84378ada15ab
test_decode_brainix_as_jpeg
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
58
diff
changeset
|
2946 # No matching content type |
84378ada15ab
test_decode_brainix_as_jpeg
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
58
diff
changeset
|
2947 self.assertRaises(Exception, lambda: GetImage(_REMOTE, '/instances/%s/preview' % i, headers = { 'Accept' : 'application/pdf' })) |
69
83fd88230097
test_media_encodings
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
68
diff
changeset
|
2948 |
83fd88230097
test_media_encodings
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
68
diff
changeset
|
2949 |
83fd88230097
test_media_encodings
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
68
diff
changeset
|
2950 |
83fd88230097
test_media_encodings
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
68
diff
changeset
|
2951 def test_media_encodings(self): |
83fd88230097
test_media_encodings
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
68
diff
changeset
|
2952 ascii = UploadInstance(_REMOTE, 'Knee/T1/IM-0001-0001.dcm')['ID'] |
83fd88230097
test_media_encodings
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
68
diff
changeset
|
2953 latin1 = UploadInstance(_REMOTE, 'Brainix/Epi/IM-0001-0001.dcm')['ID'] |
83fd88230097
test_media_encodings
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
68
diff
changeset
|
2954 latin2 = UploadInstance(_REMOTE, 'MarekLatin2.dcm')['ID'] |
83fd88230097
test_media_encodings
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
68
diff
changeset
|
2955 |
83fd88230097
test_media_encodings
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
68
diff
changeset
|
2956 tmp = DoPost(_REMOTE, '/tools/create-media', [ascii,latin1,latin2]) |
83fd88230097
test_media_encodings
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
68
diff
changeset
|
2957 z = zipfile.ZipFile(StringIO(tmp), "r") |
83fd88230097
test_media_encodings
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
68
diff
changeset
|
2958 |
83fd88230097
test_media_encodings
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
68
diff
changeset
|
2959 self.assertEqual(4, len(z.namelist())) |
83fd88230097
test_media_encodings
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
68
diff
changeset
|
2960 self.assertTrue('IMAGES/IM0' in z.namelist()) |
83fd88230097
test_media_encodings
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
68
diff
changeset
|
2961 self.assertTrue('IMAGES/IM1' in z.namelist()) |
83fd88230097
test_media_encodings
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
68
diff
changeset
|
2962 self.assertTrue('IMAGES/IM2' in z.namelist()) |
83fd88230097
test_media_encodings
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
68
diff
changeset
|
2963 self.assertTrue('DICOMDIR' in z.namelist()) |
83fd88230097
test_media_encodings
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
68
diff
changeset
|
2964 |
83fd88230097
test_media_encodings
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
68
diff
changeset
|
2965 try: |
83fd88230097
test_media_encodings
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
68
diff
changeset
|
2966 os.remove('/tmp/DICOMDIR') |
83fd88230097
test_media_encodings
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
68
diff
changeset
|
2967 except: |
83fd88230097
test_media_encodings
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
68
diff
changeset
|
2968 # The file does not exist |
83fd88230097
test_media_encodings
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
68
diff
changeset
|
2969 pass |
83fd88230097
test_media_encodings
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
68
diff
changeset
|
2970 |
83fd88230097
test_media_encodings
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
68
diff
changeset
|
2971 z.extract('DICOMDIR', '/tmp') |
83fd88230097
test_media_encodings
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
68
diff
changeset
|
2972 a = subprocess.check_output([ FindExecutable('dciodvfy'), '/tmp/DICOMDIR' ], |
83fd88230097
test_media_encodings
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
68
diff
changeset
|
2973 stderr = subprocess.STDOUT).split('\n') |
83fd88230097
test_media_encodings
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
68
diff
changeset
|
2974 |
83fd88230097
test_media_encodings
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
68
diff
changeset
|
2975 a = subprocess.check_output([ FindExecutable('dcentvfy'), '/tmp/DICOMDIR' ], |
83fd88230097
test_media_encodings
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
68
diff
changeset
|
2976 stderr = subprocess.STDOUT).split('\n') |
83fd88230097
test_media_encodings
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
68
diff
changeset
|
2977 self.assertEqual(1, len(a)) |
83fd88230097
test_media_encodings
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
68
diff
changeset
|
2978 self.assertEqual('', a[0]) |
83fd88230097
test_media_encodings
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
68
diff
changeset
|
2979 |
83fd88230097
test_media_encodings
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
68
diff
changeset
|
2980 a = subprocess.check_output([ FindExecutable('dcm2xml'), '/tmp/DICOMDIR' ]) |
83fd88230097
test_media_encodings
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
68
diff
changeset
|
2981 self.assertTrue(re.search('1.3.46.670589.11.17521.5.0.3124.2008081908590448738', a) != None) |
83fd88230097
test_media_encodings
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
68
diff
changeset
|
2982 self.assertTrue(re.search('1.3.46.670589.11.0.0.11.4.2.0.8743.5.5396.2006120114333648576', a) != None) |
83fd88230097
test_media_encodings
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
68
diff
changeset
|
2983 self.assertTrue(re.search('1.2.826.0.1.3680043.2.1569.1.4.323026757.1700.1399452091.57', a) != None) |
83fd88230097
test_media_encodings
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
68
diff
changeset
|
2984 |
83fd88230097
test_media_encodings
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
68
diff
changeset
|
2985 os.remove('/tmp/DICOMDIR') |
71
48740070cbf1
TDD: tests for ongoing development of counter tags in C-Find
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
70
diff
changeset
|
2986 |
48740070cbf1
TDD: tests for ongoing development of counter tags in C-Find
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
70
diff
changeset
|
2987 |
48740070cbf1
TDD: tests for ongoing development of counter tags in C-Find
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
70
diff
changeset
|
2988 def test_findscu_counters(self): |
48740070cbf1
TDD: tests for ongoing development of counter tags in C-Find
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
70
diff
changeset
|
2989 UploadInstance(_REMOTE, 'Comunix/Ct/IM-0001-0001.dcm') |
48740070cbf1
TDD: tests for ongoing development of counter tags in C-Find
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
70
diff
changeset
|
2990 UploadInstance(_REMOTE, 'Comunix/Pet/IM-0001-0001.dcm') |
48740070cbf1
TDD: tests for ongoing development of counter tags in C-Find
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
70
diff
changeset
|
2991 UploadInstance(_REMOTE, 'Comunix/Pet/IM-0001-0002.dcm') |
48740070cbf1
TDD: tests for ongoing development of counter tags in C-Find
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
70
diff
changeset
|
2992 |
48740070cbf1
TDD: tests for ongoing development of counter tags in C-Find
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
70
diff
changeset
|
2993 i = CallFindScu([ '-k', '0008,0052=PATIENT', '-k', 'NumberOfPatientRelatedStudies' ]) |
48740070cbf1
TDD: tests for ongoing development of counter tags in C-Find
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
70
diff
changeset
|
2994 s = re.findall('\(0020,1200\).*?\[(.*?)\]', i) |
48740070cbf1
TDD: tests for ongoing development of counter tags in C-Find
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
70
diff
changeset
|
2995 self.assertEqual(1, len(s)) |
48740070cbf1
TDD: tests for ongoing development of counter tags in C-Find
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
70
diff
changeset
|
2996 self.assertTrue('1 ' in s) |
48740070cbf1
TDD: tests for ongoing development of counter tags in C-Find
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
70
diff
changeset
|
2997 |
48740070cbf1
TDD: tests for ongoing development of counter tags in C-Find
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
70
diff
changeset
|
2998 i = CallFindScu([ '-k', '0008,0052=PATIENT', '-k', 'NumberOfPatientRelatedSeries' ]) |
48740070cbf1
TDD: tests for ongoing development of counter tags in C-Find
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
70
diff
changeset
|
2999 s = re.findall('\(0020,1202\).*?\[(.*?)\]', i) |
48740070cbf1
TDD: tests for ongoing development of counter tags in C-Find
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
70
diff
changeset
|
3000 self.assertEqual(1, len(s)) |
48740070cbf1
TDD: tests for ongoing development of counter tags in C-Find
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
70
diff
changeset
|
3001 self.assertTrue('2 ' in s) |
48740070cbf1
TDD: tests for ongoing development of counter tags in C-Find
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
70
diff
changeset
|
3002 |
48740070cbf1
TDD: tests for ongoing development of counter tags in C-Find
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
70
diff
changeset
|
3003 i = CallFindScu([ '-k', '0008,0052=PATIENT', '-k', 'NumberOfPatientRelatedInstances' ]) |
48740070cbf1
TDD: tests for ongoing development of counter tags in C-Find
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
70
diff
changeset
|
3004 s = re.findall('\(0020,1204\).*?\[(.*?)\]', i) |
48740070cbf1
TDD: tests for ongoing development of counter tags in C-Find
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
70
diff
changeset
|
3005 self.assertEqual(1, len(s)) |
48740070cbf1
TDD: tests for ongoing development of counter tags in C-Find
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
70
diff
changeset
|
3006 self.assertTrue('3 ' in s) |
48740070cbf1
TDD: tests for ongoing development of counter tags in C-Find
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
70
diff
changeset
|
3007 |
48740070cbf1
TDD: tests for ongoing development of counter tags in C-Find
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
70
diff
changeset
|
3008 i = CallFindScu([ '-k', '0008,0052=STUDY', '-k', 'NumberOfStudyRelatedSeries' ]) |
48740070cbf1
TDD: tests for ongoing development of counter tags in C-Find
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
70
diff
changeset
|
3009 s = re.findall('\(0020,1206\).*?\[(.*?)\]', i) |
48740070cbf1
TDD: tests for ongoing development of counter tags in C-Find
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
70
diff
changeset
|
3010 self.assertEqual(1, len(s)) |
48740070cbf1
TDD: tests for ongoing development of counter tags in C-Find
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
70
diff
changeset
|
3011 self.assertTrue('2 ' in s) |
48740070cbf1
TDD: tests for ongoing development of counter tags in C-Find
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
70
diff
changeset
|
3012 |
48740070cbf1
TDD: tests for ongoing development of counter tags in C-Find
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
70
diff
changeset
|
3013 i = CallFindScu([ '-k', '0008,0052=STUDY', '-k', 'NumberOfStudyRelatedInstances' ]) |
48740070cbf1
TDD: tests for ongoing development of counter tags in C-Find
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
70
diff
changeset
|
3014 s = re.findall('\(0020,1208\).*?\[(.*?)\]', i) |
48740070cbf1
TDD: tests for ongoing development of counter tags in C-Find
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
70
diff
changeset
|
3015 self.assertEqual(1, len(s)) |
48740070cbf1
TDD: tests for ongoing development of counter tags in C-Find
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
70
diff
changeset
|
3016 self.assertTrue('3 ' in s) |
48740070cbf1
TDD: tests for ongoing development of counter tags in C-Find
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
70
diff
changeset
|
3017 |
48740070cbf1
TDD: tests for ongoing development of counter tags in C-Find
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
70
diff
changeset
|
3018 i = CallFindScu([ '-k', '0008,0052=SERIES', '-k', 'NumberOfSeriesRelatedInstances' ]) |
48740070cbf1
TDD: tests for ongoing development of counter tags in C-Find
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
70
diff
changeset
|
3019 s = re.findall('\(0020,1209\).*?\[(.*?)\]', i) |
48740070cbf1
TDD: tests for ongoing development of counter tags in C-Find
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
70
diff
changeset
|
3020 self.assertEqual(2, len(s)) |
48740070cbf1
TDD: tests for ongoing development of counter tags in C-Find
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
70
diff
changeset
|
3021 self.assertTrue('1 ' in s) |
48740070cbf1
TDD: tests for ongoing development of counter tags in C-Find
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
70
diff
changeset
|
3022 self.assertTrue('2 ' in s) |
48740070cbf1
TDD: tests for ongoing development of counter tags in C-Find
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
70
diff
changeset
|
3023 |
48740070cbf1
TDD: tests for ongoing development of counter tags in C-Find
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
70
diff
changeset
|
3024 i = CallFindScu([ '-k', '0008,0052=STUDY', '-k', 'ModalitiesInStudy' ]) |
48740070cbf1
TDD: tests for ongoing development of counter tags in C-Find
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
70
diff
changeset
|
3025 s = re.findall('\(0008,0061\).*?\[(.*?)\]', i) |
48740070cbf1
TDD: tests for ongoing development of counter tags in C-Find
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
70
diff
changeset
|
3026 self.assertEqual(1, len(s)) |
48740070cbf1
TDD: tests for ongoing development of counter tags in C-Find
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
70
diff
changeset
|
3027 t = map(lambda x: x.strip(), s[0].split('\\')) |
48740070cbf1
TDD: tests for ongoing development of counter tags in C-Find
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
70
diff
changeset
|
3028 self.assertTrue('PT' in t) |
48740070cbf1
TDD: tests for ongoing development of counter tags in C-Find
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
70
diff
changeset
|
3029 self.assertTrue('CT' in t) |
48740070cbf1
TDD: tests for ongoing development of counter tags in C-Find
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
70
diff
changeset
|
3030 |
48740070cbf1
TDD: tests for ongoing development of counter tags in C-Find
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
70
diff
changeset
|
3031 i = CallFindScu([ '-k', '0008,0052=STUDY', '-k', 'SOPClassesInStudy' ]) |
48740070cbf1
TDD: tests for ongoing development of counter tags in C-Find
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
70
diff
changeset
|
3032 s = re.findall('\(0008,0062\).*?\[(.*?)\]', i) |
48740070cbf1
TDD: tests for ongoing development of counter tags in C-Find
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
70
diff
changeset
|
3033 self.assertEqual(1, len(s)) |
176
48cc188ffb09
strip trailing 0 char that appears with some findscu versions
am@osimis.io
parents:
175
diff
changeset
|
3034 t = map(lambda x: x.strip('\x00'), s[0].split('\\')) |
71
48740070cbf1
TDD: tests for ongoing development of counter tags in C-Find
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
70
diff
changeset
|
3035 self.assertTrue('1.2.840.10008.5.1.4.1.1.2' in t) |
48740070cbf1
TDD: tests for ongoing development of counter tags in C-Find
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
70
diff
changeset
|
3036 self.assertTrue('1.2.840.10008.5.1.4.1.1.128' in t) |
48740070cbf1
TDD: tests for ongoing development of counter tags in C-Find
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
70
diff
changeset
|
3037 |
48740070cbf1
TDD: tests for ongoing development of counter tags in C-Find
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
70
diff
changeset
|
3038 |
78
b89af51797ff
test_decode_transfer_syntax
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
74
diff
changeset
|
3039 def test_decode_transfer_syntax(self): |
b89af51797ff
test_decode_transfer_syntax
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
74
diff
changeset
|
3040 def Check(t, md5): |
b89af51797ff
test_decode_transfer_syntax
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
74
diff
changeset
|
3041 i = UploadInstance(_REMOTE, 'TransferSyntaxes/%s.dcm' % t)['ID'] |
b89af51797ff
test_decode_transfer_syntax
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
74
diff
changeset
|
3042 |
89
74b7b9aed5f8
test TransferSyntax metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
87
diff
changeset
|
3043 if t != '1.2.840.10008.1.2': # This file has no meta header |
74b7b9aed5f8
test TransferSyntax metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
87
diff
changeset
|
3044 transferSyntax = DoGet(_REMOTE, '/instances/%s/metadata/TransferSyntax' % i) |
74b7b9aed5f8
test TransferSyntax metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
87
diff
changeset
|
3045 self.assertEqual(t, transferSyntax) |
74b7b9aed5f8
test TransferSyntax metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
87
diff
changeset
|
3046 |
78
b89af51797ff
test_decode_transfer_syntax
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
74
diff
changeset
|
3047 if md5 == None: |
b89af51797ff
test_decode_transfer_syntax
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
74
diff
changeset
|
3048 self.assertRaises(Exception, lambda: DoGet(_REMOTE, '/instances/%s/preview' % i)) |
b89af51797ff
test_decode_transfer_syntax
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
74
diff
changeset
|
3049 else: |
b89af51797ff
test_decode_transfer_syntax
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
74
diff
changeset
|
3050 m = ComputeMD5(DoGet(_REMOTE, '/instances/%s/preview' % i)) |
b89af51797ff
test_decode_transfer_syntax
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
74
diff
changeset
|
3051 self.assertEqual(m, md5) |
b89af51797ff
test_decode_transfer_syntax
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
74
diff
changeset
|
3052 |
b89af51797ff
test_decode_transfer_syntax
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
74
diff
changeset
|
3053 Check('1.2.840.10008.1.2.1', 'fae08d5415c4c0cd2cdbae4522408631') |
b89af51797ff
test_decode_transfer_syntax
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
74
diff
changeset
|
3054 Check('1.2.840.10008.1.2.2', 'f3d9784768b8feb54d6a50b6d5c37682') |
b89af51797ff
test_decode_transfer_syntax
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
74
diff
changeset
|
3055 Check('1.2.840.10008.1.2.4.50', '496326046974eea718dbc16b997c646b') |
b89af51797ff
test_decode_transfer_syntax
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
74
diff
changeset
|
3056 Check('1.2.840.10008.1.2.4.51', 'ccbe75909fe5c9f7361b48416a53fc41') |
b89af51797ff
test_decode_transfer_syntax
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
74
diff
changeset
|
3057 Check('1.2.840.10008.1.2.4.57', '7bbefe11d976b1be4e568915c6a82fc3') |
b89af51797ff
test_decode_transfer_syntax
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
74
diff
changeset
|
3058 Check('1.2.840.10008.1.2.4.70', '7132cfbc457305b04b59787030c785d2') |
b89af51797ff
test_decode_transfer_syntax
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
74
diff
changeset
|
3059 Check('1.2.840.10008.1.2.4.80', '6ff51ae525d362e0d04f550a64075a0e') |
b89af51797ff
test_decode_transfer_syntax
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
74
diff
changeset
|
3060 Check('1.2.840.10008.1.2.4.81', '801579ae7cbf28e604ea74f2c99fa2ca') |
b89af51797ff
test_decode_transfer_syntax
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
74
diff
changeset
|
3061 Check('1.2.840.10008.1.2.5', '6ff51ae525d362e0d04f550a64075a0e') # RLE, supported since Orthanc 1.0.1 |
b89af51797ff
test_decode_transfer_syntax
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
74
diff
changeset
|
3062 Check('1.2.840.10008.1.2', 'd54aed9f67a100984b42942cc2e9939b') |
b89af51797ff
test_decode_transfer_syntax
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
74
diff
changeset
|
3063 Check('1.2.840.10008.1.2.4.90', None) # JPEG-2000 image, not supported |
b89af51797ff
test_decode_transfer_syntax
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
74
diff
changeset
|
3064 Check('1.2.840.10008.1.2.4.91', None) # JPEG-2000 image, not supported |
79 | 3065 |
3066 | |
3067 def test_raw_frame(self): | |
3068 s = UploadInstance(_REMOTE, 'Issue22.dcm')['ID'] | |
3069 self.assertEqual(24, len(DoGet(_REMOTE, '/instances/%s/frames' % s))) | |
3070 a = DoGet(_REMOTE, '/instances/%s/frames/0/raw' % s) | |
3071 self.assertEqual(512 * 512 * 2, len(a)) | |
3072 self.assertEqual(512 * 512 * 2, len(DoGet(_REMOTE, '/instances/%s/frames/23/raw' % s))) | |
3073 self.assertRaises(Exception, lambda: DoGet(_REMOTE, '/instances/%s/frames/24/raw' % s)) | |
3074 self.assertEqual('1914287dc4d958eca21fdaacfb3482fa', ComputeMD5(a)) | |
3075 | |
3076 s = UploadInstance(_REMOTE, 'Multiframe.dcm')['ID'] | |
3077 self.assertEqual(76, len(DoGet(_REMOTE, '/instances/%s/frames' % s))) | |
3078 self.assertEqual(186274, len(DoGet(_REMOTE, '/instances/%s/frames/0/raw' % s))) | |
3079 self.assertEqual(189424, len(DoGet(_REMOTE, '/instances/%s/frames/75/raw' % s))) | |
3080 self.assertRaises(Exception, lambda: DoGet(_REMOTE, '/instances/%s/frames/76/raw' % s)) | |
3081 im = GetImage(_REMOTE, '/instances/%s/frames/0/raw' % s) | |
3082 self.assertEqual("L", im.mode) | |
3083 self.assertEqual(512, im.size[0]) | |
3084 self.assertEqual(512, im.size[1]) | |
3085 | |
3086 # Test an image with 2 JPEG frames spread over multiple fragments | |
3087 s = UploadInstance(_REMOTE, 'LenaTwiceWithFragments.dcm')['ID'] | |
3088 self.assertEqual(2, len(DoGet(_REMOTE, '/instances/%s/frames' % s))) | |
3089 a = DoGet(_REMOTE, '/instances/%s/frames/0/raw' % s) | |
3090 b = DoGet(_REMOTE, '/instances/%s/frames/1/raw' % s) | |
3091 self.assertEqual(69214, len(a)) | |
3092 self.assertEqual(ComputeMD5(a), ComputeMD5(b)) | |
3093 self.assertRaises(Exception, lambda: DoGet(_REMOTE, '/instances/%s/frames/2/raw' % s)) | |
3094 im = GetImage(_REMOTE, '/instances/%s/frames/0/raw' % s) | |
3095 self.assertEqual("RGB", im.mode) | |
3096 self.assertEqual(512, im.size[0]) | |
3097 self.assertEqual(512, im.size[1]) | |
3098 im = GetImage(_REMOTE, '/instances/%s/frames/0/preview' % s) | |
3099 self.assertEqual("RGB", im.mode) | |
3100 self.assertEqual(512, im.size[0]) | |
3101 self.assertEqual(512, im.size[1]) | |
81 | 3102 |
3103 | |
3104 | |
3105 def test_rest_movescu(self): | |
3106 self.assertEqual(0, len(DoGet(_REMOTE, '/patients'))) | |
3107 | |
3108 # Upload 4 instances | |
3109 UploadInstance(_REMOTE, 'Brainix/Flair/IM-0001-0001.dcm') | |
3110 UploadInstance(_REMOTE, 'Brainix/Flair/IM-0001-0002.dcm') | |
3111 UploadInstance(_REMOTE, 'Brainix/Epi/IM-0001-0001.dcm') | |
3112 UploadInstance(_REMOTE, 'Knee/T2/IM-0001-0001.dcm') | |
3113 | |
3114 self.assertEqual(2, len(DoGet(_REMOTE, '/patients'))) | |
3115 for p in DoGet(_REMOTE, '/patients'): | |
3116 DoPost(_REMOTE, '/modalities/orthanctest/store', p) | |
3117 DoDelete(_REMOTE, '/patients/%s' % p) | |
3118 | |
3119 self.assertEqual(0, len(DoGet(_REMOTE, '/patients'))) | |
3120 | |
3121 # Upload instance Brainix/Flair/IM-0001-0001.dcm | |
3122 DoPost(_REMOTE, '/modalities/orthanctest/move', { 'Level' : 'Instance', | |
3123 'Resources' : [ | |
3124 { | |
3125 'StudyInstanceUID' : '2.16.840.1.113669.632.20.1211.10000357775', | |
3126 'SeriesInstanceUID' : '1.3.46.670589.11.0.0.11.4.2.0.8743.5.5396.2006120114285654497', | |
3127 'SOPInstanceUID' : '1.3.46.670589.11.0.0.11.4.2.0.8743.5.5396.2006120114314079549', | |
3128 } | |
3129 ]}) | |
3130 | |
3131 # Upload series Brainix/Flair/* | |
3132 self.assertEqual(1, len(DoGet(_REMOTE, '/patients'))) | |
3133 self.assertEqual(1, len(DoGet(_REMOTE, '/studies'))) | |
3134 self.assertEqual(1, len(DoGet(_REMOTE, '/series'))) | |
3135 self.assertEqual(1, len(DoGet(_REMOTE, '/instances'))) | |
3136 | |
3137 DoPost(_REMOTE, '/modalities/orthanctest/move', { 'Level' : 'Series', | |
3138 'Resources' : [ | |
3139 { | |
3140 'StudyInstanceUID' : '2.16.840.1.113669.632.20.1211.10000357775', | |
3141 'SeriesInstanceUID' : '1.3.46.670589.11.0.0.11.4.2.0.8743.5.5396.2006120114285654497', | |
3142 } | |
3143 ]}) | |
3144 self.assertEqual(1, len(DoGet(_REMOTE, '/patients'))) | |
3145 self.assertEqual(1, len(DoGet(_REMOTE, '/studies'))) | |
3146 self.assertEqual(1, len(DoGet(_REMOTE, '/series'))) | |
3147 self.assertEqual(2, len(DoGet(_REMOTE, '/instances'))) | |
3148 | |
3149 # Upload series Brainix/Epi/* | |
3150 DoPost(_REMOTE, '/modalities/orthanctest/move', { 'Level' : 'Series', | |
3151 'Resources' : [ | |
3152 { | |
3153 'StudyInstanceUID' : '2.16.840.1.113669.632.20.1211.10000357775', | |
3154 'SeriesInstanceUID' : '1.3.46.670589.11.0.0.11.4.2.0.8743.5.5396.2006120114314125550', | |
3155 } | |
3156 ]}) | |
3157 self.assertEqual(1, len(DoGet(_REMOTE, '/patients'))) | |
3158 self.assertEqual(1, len(DoGet(_REMOTE, '/studies'))) | |
3159 self.assertEqual(2, len(DoGet(_REMOTE, '/series'))) | |
3160 self.assertEqual(3, len(DoGet(_REMOTE, '/instances'))) | |
3161 | |
3162 # Upload study Knee/* | |
3163 DoPost(_REMOTE, '/modalities/orthanctest/move', { 'Level' : 'Study', | |
3164 'Resources' : [ | |
3165 { | |
3166 'StudyInstanceUID' : '2.16.840.1.113669.632.20.121711.10000160881', | |
3167 } | |
3168 ]}) | |
3169 self.assertEqual(2, len(DoGet(_REMOTE, '/patients'))) | |
3170 self.assertEqual(2, len(DoGet(_REMOTE, '/studies'))) | |
3171 self.assertEqual(3, len(DoGet(_REMOTE, '/series'))) | |
3172 self.assertEqual(4, len(DoGet(_REMOTE, '/instances'))) | |
3173 | |
3174 # Reset | |
3175 for p in DoGet(_REMOTE, '/patients'): | |
3176 DoDelete(_REMOTE, '/patients/%s' % p) | |
3177 | |
3178 self.assertEqual(0, len(DoGet(_REMOTE, '/patients'))) | |
3179 | |
3180 | |
3181 # Upload all at once | |
3182 DoPost(_REMOTE, '/modalities/orthanctest/move', { 'Level' : 'Study', | |
3183 'Resources' : [ | |
3184 { | |
3185 'StudyInstanceUID' : '2.16.840.1.113669.632.20.121711.10000160881', | |
3186 }, | |
3187 { | |
3188 'StudyInstanceUID' : '2.16.840.1.113669.632.20.1211.10000357775', | |
3189 } | |
3190 ]}) | |
3191 self.assertEqual(2, len(DoGet(_REMOTE, '/patients'))) | |
3192 self.assertEqual(2, len(DoGet(_REMOTE, '/studies'))) | |
3193 self.assertEqual(3, len(DoGet(_REMOTE, '/series'))) | |
3194 self.assertEqual(4, len(DoGet(_REMOTE, '/instances'))) | |
3195 | |
86
0401ef51f5c1
test_reconstruct_json
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
83
diff
changeset
|
3196 |
0401ef51f5c1
test_reconstruct_json
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
83
diff
changeset
|
3197 |
0401ef51f5c1
test_reconstruct_json
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
83
diff
changeset
|
3198 def test_reconstruct_json(self): |
0401ef51f5c1
test_reconstruct_json
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
83
diff
changeset
|
3199 self.assertEqual(0, len(DoGet(_REMOTE, '/patients'))) |
0401ef51f5c1
test_reconstruct_json
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
83
diff
changeset
|
3200 |
0401ef51f5c1
test_reconstruct_json
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
83
diff
changeset
|
3201 instance = UploadInstance(_REMOTE, 'DummyCT.dcm')['ID'] |
0401ef51f5c1
test_reconstruct_json
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
83
diff
changeset
|
3202 first = DoGet(_REMOTE, '/instances/%s/tags' % instance) |
0401ef51f5c1
test_reconstruct_json
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
83
diff
changeset
|
3203 |
0401ef51f5c1
test_reconstruct_json
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
83
diff
changeset
|
3204 self.assertEqual('TWINOW', first['0008,1010']['Value']) |
0401ef51f5c1
test_reconstruct_json
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
83
diff
changeset
|
3205 self.assertEqual(2, len(DoGet(_REMOTE, '/instances/%s/attachments' % instance))) |
0401ef51f5c1
test_reconstruct_json
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
83
diff
changeset
|
3206 |
0401ef51f5c1
test_reconstruct_json
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
83
diff
changeset
|
3207 # Cannot delete the "DICOM" attachment |
0401ef51f5c1
test_reconstruct_json
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
83
diff
changeset
|
3208 self.assertRaises(Exception, lambda: DoDelete(_REMOTE, '/instances/%s/attachments/dicom' % instance)) |
0401ef51f5c1
test_reconstruct_json
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
83
diff
changeset
|
3209 |
0401ef51f5c1
test_reconstruct_json
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
83
diff
changeset
|
3210 # Can delete the "DICOM as JSON" attachment |
0401ef51f5c1
test_reconstruct_json
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
83
diff
changeset
|
3211 r = DoDelete(_REMOTE, '/instances/%s/attachments/dicom-as-json' % instance) |
0401ef51f5c1
test_reconstruct_json
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
83
diff
changeset
|
3212 self.assertTrue(type(r) is dict and len(r) == 0) |
0401ef51f5c1
test_reconstruct_json
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
83
diff
changeset
|
3213 |
0401ef51f5c1
test_reconstruct_json
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
83
diff
changeset
|
3214 # Only the "DICOM" attachment subsists |
0401ef51f5c1
test_reconstruct_json
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
83
diff
changeset
|
3215 self.assertEqual(1, len(DoGet(_REMOTE, '/instances/%s/attachments' % instance))) |
0401ef51f5c1
test_reconstruct_json
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
83
diff
changeset
|
3216 |
0401ef51f5c1
test_reconstruct_json
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
83
diff
changeset
|
3217 # Cannot manually reconstruct the "DICOM as JSON" attachment |
0401ef51f5c1
test_reconstruct_json
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
83
diff
changeset
|
3218 self.assertRaises(Exception, lambda: DoPut(_REMOTE, '/patients/%s/attachments/dicom-as-json' % patient, 'hello')) |
0401ef51f5c1
test_reconstruct_json
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
83
diff
changeset
|
3219 |
0401ef51f5c1
test_reconstruct_json
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parents:
83
diff
changeset
|
3220 # Transparently reconstruct the "DICOM as JSON" attachment |
0401ef51f5c1
test_reconstruct_json
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
83
diff
changeset
|
3221 self.assertRaises(Exception, lambda: DoGet(_REMOTE, '/instances/%s/attachments/dicom-as-json' % instance)) |
0401ef51f5c1
test_reconstruct_json
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parents:
83
diff
changeset
|
3222 second = DoGet(_REMOTE, '/instances/%s/tags' % instance) |
0401ef51f5c1
test_reconstruct_json
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
83
diff
changeset
|
3223 self.assertEqual(2, len(DoGet(_REMOTE, '/instances/%s/attachments' % instance))) |
0401ef51f5c1
test_reconstruct_json
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
83
diff
changeset
|
3224 |
0401ef51f5c1
test_reconstruct_json
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
83
diff
changeset
|
3225 third = DoGet(_REMOTE, '/instances/%s/attachments/dicom-as-json/data' % instance) |
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Sebastien Jodogne <s.jodogne@gmail.com>
parents:
83
diff
changeset
|
3226 self.assertEqual(str(first), str(second)) |
0401ef51f5c1
test_reconstruct_json
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
83
diff
changeset
|
3227 self.assertEqual(str(first), str(third)) |
87
4b24faec842b
test_reconstruct_json2 + test_private_tags
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parents:
86
diff
changeset
|
3228 |
4b24faec842b
test_reconstruct_json2 + test_private_tags
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parents:
86
diff
changeset
|
3229 |
4b24faec842b
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Sebastien Jodogne <s.jodogne@gmail.com>
parents:
86
diff
changeset
|
3230 def test_reconstruct_json2(self): |
4b24faec842b
test_reconstruct_json2 + test_private_tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
86
diff
changeset
|
3231 self.assertEqual(0, len(DoGet(_REMOTE, '/patients'))) |
4b24faec842b
test_reconstruct_json2 + test_private_tags
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parents:
86
diff
changeset
|
3232 |
4b24faec842b
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parents:
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diff
changeset
|
3233 a = UploadInstance(_REMOTE, 'Brainix/Flair/IM-0001-0001.dcm')['ID'] |
4b24faec842b
test_reconstruct_json2 + test_private_tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
changeset
|
3234 b = UploadInstance(_REMOTE, 'Knee/T2/IM-0001-0001.dcm')['ID'] |
4b24faec842b
test_reconstruct_json2 + test_private_tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
86
diff
changeset
|
3235 |
4b24faec842b
test_reconstruct_json2 + test_private_tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
86
diff
changeset
|
3236 self.assertEqual('BRAINIX', DoGet(_REMOTE, '/instances/%s/tags?simplify' % a)['PatientName']) |
4b24faec842b
test_reconstruct_json2 + test_private_tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
86
diff
changeset
|
3237 self.assertEqual('KNEE', DoGet(_REMOTE, '/instances/%s/tags?simplify' % b)['PatientName']) |
4b24faec842b
test_reconstruct_json2 + test_private_tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
86
diff
changeset
|
3238 |
4b24faec842b
test_reconstruct_json2 + test_private_tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
86
diff
changeset
|
3239 self.assertEqual(2, len(DoGet(_REMOTE, '/instances/%s/attachments' % a))) |
4b24faec842b
test_reconstruct_json2 + test_private_tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
86
diff
changeset
|
3240 self.assertEqual(2, len(DoGet(_REMOTE, '/instances/%s/attachments' % b))) |
4b24faec842b
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Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
changeset
|
3241 |
4b24faec842b
test_reconstruct_json2 + test_private_tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
86
diff
changeset
|
3242 DoPost(_REMOTE, '/tools/invalidate-tags', '', 'text/plain') |
4b24faec842b
test_reconstruct_json2 + test_private_tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
86
diff
changeset
|
3243 |
4b24faec842b
test_reconstruct_json2 + test_private_tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
86
diff
changeset
|
3244 self.assertEqual(1, len(DoGet(_REMOTE, '/instances/%s/attachments' % a))) |
4b24faec842b
test_reconstruct_json2 + test_private_tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
86
diff
changeset
|
3245 self.assertEqual(1, len(DoGet(_REMOTE, '/instances/%s/attachments' % b))) |
4b24faec842b
test_reconstruct_json2 + test_private_tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
86
diff
changeset
|
3246 |
4b24faec842b
test_reconstruct_json2 + test_private_tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
86
diff
changeset
|
3247 self.assertEqual('BRAINIX', DoGet(_REMOTE, '/instances/%s/tags?simplify' % a)['PatientName']) |
4b24faec842b
test_reconstruct_json2 + test_private_tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
86
diff
changeset
|
3248 self.assertEqual('KNEE', DoGet(_REMOTE, '/instances/%s/tags?simplify' % b)['PatientName']) |
4b24faec842b
test_reconstruct_json2 + test_private_tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
86
diff
changeset
|
3249 |
4b24faec842b
test_reconstruct_json2 + test_private_tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
86
diff
changeset
|
3250 self.assertEqual(2, len(DoGet(_REMOTE, '/instances/%s/attachments' % a))) |
4b24faec842b
test_reconstruct_json2 + test_private_tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
86
diff
changeset
|
3251 self.assertEqual(2, len(DoGet(_REMOTE, '/instances/%s/attachments' % b))) |
4b24faec842b
test_reconstruct_json2 + test_private_tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
86
diff
changeset
|
3252 |
4b24faec842b
test_reconstruct_json2 + test_private_tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
86
diff
changeset
|
3253 |
4b24faec842b
test_reconstruct_json2 + test_private_tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
86
diff
changeset
|
3254 def test_private_tags(self): |
4b24faec842b
test_reconstruct_json2 + test_private_tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
86
diff
changeset
|
3255 i = UploadInstance(_REMOTE, 'PrivateMDNTags.dcm')['ID'] |
4b24faec842b
test_reconstruct_json2 + test_private_tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
86
diff
changeset
|
3256 t = DoGet(_REMOTE, '/instances/%s/tags?simplify' % i) |
4b24faec842b
test_reconstruct_json2 + test_private_tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
86
diff
changeset
|
3257 self.assertEqual('1.2.840.113704.1.111.6320.1342451261.21', t['PET-CT Multi Modality Name']) |
4b24faec842b
test_reconstruct_json2 + test_private_tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
86
diff
changeset
|
3258 self.assertEqual('p37s0_na_ctac.img', t['Original Image Filename']) |
4b24faec842b
test_reconstruct_json2 + test_private_tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
86
diff
changeset
|
3259 |
92
dbcbffb889da
test_findscu_encoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
89
diff
changeset
|
3260 |
dbcbffb889da
test_findscu_encoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
89
diff
changeset
|
3261 def test_findscu_encoding(self): |
dbcbffb889da
test_findscu_encoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
89
diff
changeset
|
3262 # Check out ../Database/Encodings/Generate.sh |
dbcbffb889da
test_findscu_encoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
89
diff
changeset
|
3263 TEST = u'Test-éüäöòДΘĝדصķћ๛ネİ' |
dbcbffb889da
test_findscu_encoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
89
diff
changeset
|
3264 ENCODINGS = { |
dbcbffb889da
test_findscu_encoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
89
diff
changeset
|
3265 'Arabic' : [ 'ISO_IR 127' ], |
dbcbffb889da
test_findscu_encoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
89
diff
changeset
|
3266 'Ascii' : [ 'ISO_IR 6' ], # More accurately, ISO 646 |
dbcbffb889da
test_findscu_encoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
89
diff
changeset
|
3267 'Cyrillic' : [ 'ISO_IR 144' ], |
dbcbffb889da
test_findscu_encoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
89
diff
changeset
|
3268 'Greek' : [ 'ISO_IR 126' ], |
dbcbffb889da
test_findscu_encoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
89
diff
changeset
|
3269 'Hebrew' : [ 'ISO_IR 138' ], |
dbcbffb889da
test_findscu_encoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
89
diff
changeset
|
3270 'Japanese' : [ 'ISO_IR 13', 'shift-jis' ], |
dbcbffb889da
test_findscu_encoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
89
diff
changeset
|
3271 'Latin1' : [ 'ISO_IR 100' ], |
dbcbffb889da
test_findscu_encoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
89
diff
changeset
|
3272 'Latin2' : [ 'ISO_IR 101' ], |
dbcbffb889da
test_findscu_encoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
89
diff
changeset
|
3273 'Latin3' : [ 'ISO_IR 109' ], |
dbcbffb889da
test_findscu_encoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
89
diff
changeset
|
3274 'Latin4' : [ 'ISO_IR 110' ], |
dbcbffb889da
test_findscu_encoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
89
diff
changeset
|
3275 'Latin5' : [ 'ISO_IR 148' ], |
dbcbffb889da
test_findscu_encoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
89
diff
changeset
|
3276 'Thai' : [ 'ISO_IR 166', 'tis-620' ], |
dbcbffb889da
test_findscu_encoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
89
diff
changeset
|
3277 'Utf8' : [ 'ISO_IR 192' ], |
dbcbffb889da
test_findscu_encoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
89
diff
changeset
|
3278 } |
dbcbffb889da
test_findscu_encoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
89
diff
changeset
|
3279 |
dbcbffb889da
test_findscu_encoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
89
diff
changeset
|
3280 for name in ENCODINGS.iterkeys(): |
dbcbffb889da
test_findscu_encoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
89
diff
changeset
|
3281 if len(ENCODINGS[name]) == 1: |
dbcbffb889da
test_findscu_encoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
89
diff
changeset
|
3282 ENCODINGS[name].append(name.lower()) |
dbcbffb889da
test_findscu_encoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
89
diff
changeset
|
3283 |
dbcbffb889da
test_findscu_encoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
89
diff
changeset
|
3284 UploadInstance(_REMOTE, 'Encodings/Lena-utf8.dcm') |
dbcbffb889da
test_findscu_encoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
89
diff
changeset
|
3285 |
dbcbffb889da
test_findscu_encoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
89
diff
changeset
|
3286 for name in ENCODINGS.iterkeys(): |
dbcbffb889da
test_findscu_encoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
89
diff
changeset
|
3287 self.assertEqual(name, DoPut(_REMOTE, '/tools/default-encoding', name)) |
dbcbffb889da
test_findscu_encoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
89
diff
changeset
|
3288 self.assertEqual(name, DoGet(_REMOTE, '/tools/default-encoding')) |
dbcbffb889da
test_findscu_encoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
89
diff
changeset
|
3289 |
dbcbffb889da
test_findscu_encoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
89
diff
changeset
|
3290 i = CallFindScu([ '-k', '0008,0052=STUDY', |
dbcbffb889da
test_findscu_encoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
89
diff
changeset
|
3291 '-k', 'SpecificCharacterSet', |
dbcbffb889da
test_findscu_encoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
89
diff
changeset
|
3292 '-k', 'PatientName' ]) |
dbcbffb889da
test_findscu_encoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
89
diff
changeset
|
3293 |
dbcbffb889da
test_findscu_encoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
89
diff
changeset
|
3294 characterSet = re.findall('\(0008,0005\).*?\[(.*?)\]', i) |
dbcbffb889da
test_findscu_encoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
89
diff
changeset
|
3295 self.assertEqual(1, len(characterSet)) |
dbcbffb889da
test_findscu_encoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
89
diff
changeset
|
3296 self.assertEqual(ENCODINGS[name][0], characterSet[0].strip()) |
dbcbffb889da
test_findscu_encoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
89
diff
changeset
|
3297 |
dbcbffb889da
test_findscu_encoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
89
diff
changeset
|
3298 patientName = re.findall('\(0010,0010\).*?\[(.*?)\]', i) |
dbcbffb889da
test_findscu_encoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
89
diff
changeset
|
3299 self.assertEqual(1, len(patientName)) |
dbcbffb889da
test_findscu_encoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
89
diff
changeset
|
3300 |
dbcbffb889da
test_findscu_encoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
89
diff
changeset
|
3301 expected = TEST.encode(ENCODINGS[name][1], 'ignore') |
dbcbffb889da
test_findscu_encoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
89
diff
changeset
|
3302 self.assertEqual(expected, patientName[0].strip()) |
dbcbffb889da
test_findscu_encoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
89
diff
changeset
|
3303 |
dbcbffb889da
test_findscu_encoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
89
diff
changeset
|
3304 |
dbcbffb889da
test_findscu_encoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
89
diff
changeset
|
3305 #for master in ENCODINGS: |
dbcbffb889da
test_findscu_encoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
89
diff
changeset
|
3306 for master in [ 'Latin1', 'Utf8', 'Cyrillic' ]: # Shortcut to speedup tests |
dbcbffb889da
test_findscu_encoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
89
diff
changeset
|
3307 self.assertEqual(master, DoPut(_REMOTE, '/tools/default-encoding', master)) |
dbcbffb889da
test_findscu_encoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
89
diff
changeset
|
3308 self.assertEqual(master, DoGet(_REMOTE, '/tools/default-encoding')) |
dbcbffb889da
test_findscu_encoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
89
diff
changeset
|
3309 |
dbcbffb889da
test_findscu_encoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
89
diff
changeset
|
3310 for name in ENCODINGS: |
dbcbffb889da
test_findscu_encoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
89
diff
changeset
|
3311 DropOrthanc(_REMOTE) |
dbcbffb889da
test_findscu_encoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
89
diff
changeset
|
3312 UploadInstance(_REMOTE, 'Encodings/Lena-%s.dcm' % ENCODINGS[name][1]) |
dbcbffb889da
test_findscu_encoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
89
diff
changeset
|
3313 |
dbcbffb889da
test_findscu_encoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
89
diff
changeset
|
3314 i = CallFindScu([ '-k', '0008,0052=STUDY', |
dbcbffb889da
test_findscu_encoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
89
diff
changeset
|
3315 '-k', 'PatientID', |
dbcbffb889da
test_findscu_encoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
89
diff
changeset
|
3316 '-k', 'SpecificCharacterSet', |
dbcbffb889da
test_findscu_encoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
89
diff
changeset
|
3317 '-k', 'PatientName' ]) |
dbcbffb889da
test_findscu_encoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
89
diff
changeset
|
3318 i = i.decode(ENCODINGS[master][1]) |
dbcbffb889da
test_findscu_encoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
89
diff
changeset
|
3319 |
dbcbffb889da
test_findscu_encoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
89
diff
changeset
|
3320 characterSet = re.findall('\(0008,0005\).*?\[(.*?)\]', i) |
dbcbffb889da
test_findscu_encoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
89
diff
changeset
|
3321 self.assertEqual(1, len(characterSet)) |
dbcbffb889da
test_findscu_encoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
89
diff
changeset
|
3322 self.assertEqual(ENCODINGS[master][0], characterSet[0].strip()) |
dbcbffb889da
test_findscu_encoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
89
diff
changeset
|
3323 |
dbcbffb889da
test_findscu_encoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
89
diff
changeset
|
3324 patientId = re.findall('\(0010,0020\).*?\[(.*?)\]', i) |
dbcbffb889da
test_findscu_encoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
89
diff
changeset
|
3325 self.assertEqual(1, len(patientId)) |
dbcbffb889da
test_findscu_encoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
89
diff
changeset
|
3326 self.assertEqual(ENCODINGS[name][1], patientId[0].strip()) |
dbcbffb889da
test_findscu_encoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
89
diff
changeset
|
3327 |
dbcbffb889da
test_findscu_encoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
89
diff
changeset
|
3328 patientName = re.findall('\(0010,0010\).*?\[(.*?)\]', i) |
dbcbffb889da
test_findscu_encoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
89
diff
changeset
|
3329 self.assertEqual(1, len(patientName)) |
dbcbffb889da
test_findscu_encoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
89
diff
changeset
|
3330 |
dbcbffb889da
test_findscu_encoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
89
diff
changeset
|
3331 tmp = ENCODINGS[name][1] |
dbcbffb889da
test_findscu_encoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
89
diff
changeset
|
3332 expected = TEST.encode(tmp, 'ignore').decode(tmp) |
dbcbffb889da
test_findscu_encoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
89
diff
changeset
|
3333 tmp = ENCODINGS[master][1] |
dbcbffb889da
test_findscu_encoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
89
diff
changeset
|
3334 expected = expected.encode(tmp, 'ignore').decode(tmp) |
dbcbffb889da
test_findscu_encoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
89
diff
changeset
|
3335 |
dbcbffb889da
test_findscu_encoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
89
diff
changeset
|
3336 self.assertEqual(expected, patientName[0].strip()) |
dbcbffb889da
test_findscu_encoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
89
diff
changeset
|
3337 |
dbcbffb889da
test_findscu_encoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
89
diff
changeset
|
3338 |
dbcbffb889da
test_findscu_encoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
89
diff
changeset
|
3339 a = DoPost(_REMOTE, '/tools/find', { 'Expand' : True, |
dbcbffb889da
test_findscu_encoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
89
diff
changeset
|
3340 'Level' : 'Study', |
dbcbffb889da
test_findscu_encoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
89
diff
changeset
|
3341 'Query' : { }}) |
dbcbffb889da
test_findscu_encoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
89
diff
changeset
|
3342 self.assertEqual(1, len(a)) |
dbcbffb889da
test_findscu_encoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
89
diff
changeset
|
3343 |
dbcbffb889da
test_findscu_encoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
89
diff
changeset
|
3344 tmp = ENCODINGS[name][1] |
dbcbffb889da
test_findscu_encoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
89
diff
changeset
|
3345 self.assertEqual(TEST.encode(tmp, 'ignore').decode(tmp), a[0]["PatientMainDicomTags"]["PatientName"]) |
96
272d1229cb49
test reconstruction of tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
95
diff
changeset
|
3346 |
272d1229cb49
test reconstruction of tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
95
diff
changeset
|
3347 |
272d1229cb49
test reconstruction of tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
95
diff
changeset
|
3348 def test_reconstruct(self): |
272d1229cb49
test reconstruction of tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
95
diff
changeset
|
3349 def CompareMainDicomTag(expected, instance, level, tag): |
272d1229cb49
test reconstruction of tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
95
diff
changeset
|
3350 self.assertEqual(expected, DoGet(_REMOTE, '/instances/%s/%s' % (instance, level))['MainDicomTags'][tag].strip()) |
272d1229cb49
test reconstruction of tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
95
diff
changeset
|
3351 |
272d1229cb49
test reconstruction of tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
95
diff
changeset
|
3352 a = UploadInstance(_REMOTE, 'DummyCT.dcm')['ID'] |
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test reconstruction of tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
95
diff
changeset
|
3353 |
272d1229cb49
test reconstruction of tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
95
diff
changeset
|
3354 studies = DoGet(_REMOTE, '/studies/') |
272d1229cb49
test reconstruction of tags
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parents:
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diff
changeset
|
3355 self.assertEqual(1, len(DoGet(_REMOTE, '/patients/'))) |
272d1229cb49
test reconstruction of tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
95
diff
changeset
|
3356 self.assertEqual(1, len(studies)) |
272d1229cb49
test reconstruction of tags
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parents:
95
diff
changeset
|
3357 self.assertEqual(1, len(DoGet(_REMOTE, '/series/'))) |
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test reconstruction of tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
95
diff
changeset
|
3358 self.assertEqual(1, len(DoGet(_REMOTE, '/instances/'))) |
272d1229cb49
test reconstruction of tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
95
diff
changeset
|
3359 |
272d1229cb49
test reconstruction of tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
95
diff
changeset
|
3360 modified = DoPost(_REMOTE, '/studies/%s/modify' % studies[0], { |
272d1229cb49
test reconstruction of tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
95
diff
changeset
|
3361 "Replace" : { |
272d1229cb49
test reconstruction of tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
95
diff
changeset
|
3362 "StudyDescription" : "hello", |
272d1229cb49
test reconstruction of tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
95
diff
changeset
|
3363 "SeriesDescription" : "world", |
272d1229cb49
test reconstruction of tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
95
diff
changeset
|
3364 "SOPClassUID" : "test", |
272d1229cb49
test reconstruction of tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
changeset
|
3365 "SOPInstanceUID" : "myid", |
272d1229cb49
test reconstruction of tags
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parents:
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diff
changeset
|
3366 }, |
119 | 3367 "Keep" : [ "StudyInstanceUID", "SeriesInstanceUID" ], |
3368 "Force" : True | |
96
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test reconstruction of tags
Sebastien Jodogne <s.jodogne@gmail.com>
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diff
changeset
|
3369 }) |
272d1229cb49
test reconstruction of tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
95
diff
changeset
|
3370 |
272d1229cb49
test reconstruction of tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
95
diff
changeset
|
3371 instances = DoGet(_REMOTE, '/instances/') |
272d1229cb49
test reconstruction of tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
95
diff
changeset
|
3372 self.assertEqual(1, len(DoGet(_REMOTE, '/patients/'))) |
272d1229cb49
test reconstruction of tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
95
diff
changeset
|
3373 self.assertEqual(1, len(DoGet(_REMOTE, '/studies/'))) |
272d1229cb49
test reconstruction of tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
95
diff
changeset
|
3374 self.assertEqual(1, len(DoGet(_REMOTE, '/series/'))) |
272d1229cb49
test reconstruction of tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
95
diff
changeset
|
3375 self.assertEqual(2, len(instances)) |
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test reconstruction of tags
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parents:
95
diff
changeset
|
3376 |
272d1229cb49
test reconstruction of tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
95
diff
changeset
|
3377 b = instances[0] if instances[1] == a else instances[1] |
272d1229cb49
test reconstruction of tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
95
diff
changeset
|
3378 |
272d1229cb49
test reconstruction of tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
95
diff
changeset
|
3379 CompareMainDicomTag('Knee (R)', a, 'study', 'StudyDescription') |
272d1229cb49
test reconstruction of tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
95
diff
changeset
|
3380 CompareMainDicomTag('AX. FSE PD', a, 'series', 'SeriesDescription') |
272d1229cb49
test reconstruction of tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
95
diff
changeset
|
3381 CompareMainDicomTag('1.2.840.113619.2.176.2025.1499492.7040.1171286242.109', a, '', 'SOPInstanceUID') |
272d1229cb49
test reconstruction of tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
95
diff
changeset
|
3382 CompareMainDicomTag('myid', b, '', 'SOPInstanceUID') |
272d1229cb49
test reconstruction of tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
95
diff
changeset
|
3383 self.assertEqual('1.2.840.10008.5.1.4.1.1.4', DoGet(_REMOTE, '/instances/%s/metadata/SopClassUid' % a).strip()) |
272d1229cb49
test reconstruction of tags
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parents:
95
diff
changeset
|
3384 self.assertEqual('test', DoGet(_REMOTE, '/instances/%s/metadata/SopClassUid' % b).strip()) |
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test reconstruction of tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
95
diff
changeset
|
3385 |
272d1229cb49
test reconstruction of tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
95
diff
changeset
|
3386 DoPost(_REMOTE, '/instances/%s/reconstruct' % b, {}) |
272d1229cb49
test reconstruction of tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
95
diff
changeset
|
3387 |
272d1229cb49
test reconstruction of tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
95
diff
changeset
|
3388 CompareMainDicomTag('hello', a, 'study', 'StudyDescription') |
272d1229cb49
test reconstruction of tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
95
diff
changeset
|
3389 CompareMainDicomTag('world', a, 'series', 'SeriesDescription') |
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test reconstruction of tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
95
diff
changeset
|
3390 CompareMainDicomTag('1.2.840.113619.2.176.2025.1499492.7040.1171286242.109', a, '', 'SOPInstanceUID') |
102 | 3391 |
104 | 3392 def test_httpClient_lua(self): |
3393 with open(GetDatabasePath('Lua/HttpClient.lua'), 'r') as f: | |
102 | 3394 result = DoPost(_REMOTE, '/tools/execute-script', f.read(), 'application/lua') |
3395 | |
3396 self.assertIn('OK', result) | |
107
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104
diff
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|
3397 |
fddb35f7289d
test_bitbucket_issue_44
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104
diff
changeset
|
3398 |
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changeset
|
3399 def test_bitbucket_issue_44(self): |
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diff
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3400 # https://bitbucket.org/sjodogne/orthanc/issues/44/bad-interpretation-of-photometric |
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3401 UploadInstance(_REMOTE, 'Issue44/Monochrome1.dcm') |
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3402 UploadInstance(_REMOTE, 'Issue44/Monochrome2.dcm') |
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test_bitbucket_issue_44
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|
3403 |
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diff
changeset
|
3404 # dcmcjpeg +ua +eb Monochrome1.dcm Monochrome1-Jpeg.dcm |
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|
3405 UploadInstance(_REMOTE, 'Issue44/Monochrome1-Jpeg.dcm') |
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test_bitbucket_issue_44
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diff
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|
3406 |
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|
3407 # dcmcjpeg +ua Monochrome1.dcm Monochrome1-JpegLS.dcm |
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|
3408 UploadInstance(_REMOTE, 'Issue44/Monochrome1-JpegLS.dcm') |
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diff
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|
3409 |
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diff
changeset
|
3410 monochrome1 = 'bcdd600a-a6a9c522-5f0a6e84-8657c9f3-b76e59b7' |
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|
3411 monochrome1_jpeg = '9df82121-208a2da8-0038674a-3d7a773b-b7008cd2' |
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test_bitbucket_issue_44
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|
3412 monochrome1_jpegls = '0486d1a2-9165573f-b1976b20-e927b016-6b8d67ab' |
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test_bitbucket_issue_44
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diff
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|
3413 monochrome2 = 'f00947b7-f61f7164-c93414d1-c6fbda6a-9e92ed20' |
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test_bitbucket_issue_44
Sebastien Jodogne <s.jodogne@gmail.com>
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diff
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|
3414 |
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Sebastien Jodogne <s.jodogne@gmail.com>
parents:
104
diff
changeset
|
3415 for i in [ monochrome1, monochrome1_jpeg, monochrome1_jpegls ]: |
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test_bitbucket_issue_44
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parents:
104
diff
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|
3416 im = GetImage(_REMOTE, '/instances/%s/preview' % i) |
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|
3417 self.assertEqual("L", im.mode) |
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|
3418 self.assertEqual(2010, im.size[0]) |
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parents:
104
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|
3419 self.assertEqual(2446, im.size[1]) |
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parents:
104
diff
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|
3420 |
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parents:
104
diff
changeset
|
3421 # This is the chest image, with MONOCHROME1. Raw background is |
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test_bitbucket_issue_44
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diff
changeset
|
3422 # white (255), should be rendered as black (0) => invert |
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test_bitbucket_issue_44
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104
diff
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|
3423 if i == monochrome1_jpeg: |
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test_bitbucket_issue_44
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diff
changeset
|
3424 # Add some tolerance because of JPEG destructive compression |
fddb35f7289d
test_bitbucket_issue_44
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parents:
104
diff
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|
3425 self.assertGreater(10, im.getpixel((0,0))) |
fddb35f7289d
test_bitbucket_issue_44
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parents:
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diff
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|
3426 else: |
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test_bitbucket_issue_44
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parents:
104
diff
changeset
|
3427 self.assertEqual(0, im.getpixel((0,0))) |
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test_bitbucket_issue_44
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
104
diff
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|
3428 |
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test_bitbucket_issue_44
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
104
diff
changeset
|
3429 im = GetImage(_REMOTE, '/instances/%s/preview' % monochrome2) |
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test_bitbucket_issue_44
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diff
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|
3430 self.assertEqual("L", im.mode) |
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104
diff
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|
3431 self.assertEqual(1572, im.size[0]) |
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test_bitbucket_issue_44
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104
diff
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|
3432 self.assertEqual(2010, im.size[1]) |
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test_bitbucket_issue_44
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
104
diff
changeset
|
3433 |
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Sebastien Jodogne <s.jodogne@gmail.com>
parents:
104
diff
changeset
|
3434 # This is the key image, with MONOCHROME2. Raw background is |
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test_bitbucket_issue_44
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diff
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|
3435 # white (255), should be rendered as white (255) |
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test_bitbucket_issue_44
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104
diff
changeset
|
3436 self.assertEqual(255, im.getpixel((0,0))) |
111
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107
diff
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|
3437 |
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test_bitbucket_issue_42
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parents:
107
diff
changeset
|
3438 |
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test_bitbucket_issue_42
Sebastien Jodogne <s.jodogne@gmail.com>
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107
diff
changeset
|
3439 def test_bitbucket_issue_42(self): |
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107
diff
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|
3440 # https://bitbucket.org/sjodogne/orthanc/issues/42/fails-to-modify-a-dicom-video-file |
123 | 3441 # This test fails on DCMTK 3.6.0, but succeeds in DCMTK 3.6.1 snapshots and DCMTK 3.6.2 |
111
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107
diff
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|
3442 UploadInstance(_REMOTE, 'Issue42.dcm')['ID'] |
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|
3443 modified = DoPost(_REMOTE, |
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diff
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|
3444 '/patients/da128605-e040d0c4-310615d2-3475da63-df2d1ef4/modify', |
119 | 3445 '{"Replace":{"PatientID":"Hello","PatientName":"Sample patient name"},"Force":true}', |
111
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|
3446 'application/json') |
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|
3447 self.assertTrue('PatientID' in modified) |
113
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|
3448 |
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|
3449 |
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diff
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|
3450 def test_rest_find_limit(self): |
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diff
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|
3451 # Check the "Since" and "Limit" parameters in URI "/tools/find" |
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diff
changeset
|
3452 # Related to issue 53: https://bitbucket.org/sjodogne/orthanc/issues/53 |
111
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3453 |
113
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|
3454 # Upload 6 instances |
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|
3455 brainix = [] |
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3456 knee = [] |
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|
3457 for i in range(2): |
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diff
changeset
|
3458 brainix.append(UploadInstance(_REMOTE, 'Brainix/Flair/IM-0001-000%d.dcm' % (i + 1)) ['ID']) |
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changeset
|
3459 brainix.append(UploadInstance(_REMOTE, 'Brainix/Epi/IM-0001-000%d.dcm' % (i + 1)) ['ID']) |
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changeset
|
3460 knee.append(UploadInstance(_REMOTE, 'Knee/T1/IM-0001-000%d.dcm' % (i + 1)) ['ID']) |
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|
3461 |
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changeset
|
3462 # Check using BRAINIX |
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diff
changeset
|
3463 a = DoPost(_REMOTE, '/tools/find', { 'Level' : 'Instance', |
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|
3464 'Query' : { 'PatientName' : 'B*' }, |
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changeset
|
3465 'Limit' : 10 }) |
3e5934363e76
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Sebastien Jodogne <s.jodogne@gmail.com>
parents:
112
diff
changeset
|
3466 self.assertEqual(4, len(a)) |
3e5934363e76
test_rest_find_limitµ
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
112
diff
changeset
|
3467 |
3e5934363e76
test_rest_find_limitµ
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
112
diff
changeset
|
3468 a = DoPost(_REMOTE, '/tools/find', { 'Level' : 'Instance', |
3e5934363e76
test_rest_find_limitµ
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
112
diff
changeset
|
3469 'Query' : { 'PatientName' : 'B*' }, |
3e5934363e76
test_rest_find_limitµ
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
112
diff
changeset
|
3470 'Limit' : 4 }) |
3e5934363e76
test_rest_find_limitµ
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
112
diff
changeset
|
3471 self.assertEqual(4, len(a)) |
3e5934363e76
test_rest_find_limitµ
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
112
diff
changeset
|
3472 |
3e5934363e76
test_rest_find_limitµ
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
112
diff
changeset
|
3473 a = DoPost(_REMOTE, '/tools/find', { 'Level' : 'Instance', |
3e5934363e76
test_rest_find_limitµ
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
112
diff
changeset
|
3474 'Query' : { 'PatientName' : 'B*' }, |
3e5934363e76
test_rest_find_limitµ
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
112
diff
changeset
|
3475 'Since' : 2, |
3e5934363e76
test_rest_find_limitµ
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
112
diff
changeset
|
3476 'Limit' : 4 }) |
3e5934363e76
test_rest_find_limitµ
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
112
diff
changeset
|
3477 self.assertEqual(2, len(a)) |
3e5934363e76
test_rest_find_limitµ
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
112
diff
changeset
|
3478 |
3e5934363e76
test_rest_find_limitµ
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
112
diff
changeset
|
3479 a = DoPost(_REMOTE, '/tools/find', { 'Level' : 'Instance', |
3e5934363e76
test_rest_find_limitµ
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
112
diff
changeset
|
3480 'Query' : { 'PatientName' : 'B*' }, |
3e5934363e76
test_rest_find_limitµ
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
112
diff
changeset
|
3481 'Limit' : 3 }) |
3e5934363e76
test_rest_find_limitµ
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
112
diff
changeset
|
3482 self.assertEqual(3, len(a)) |
3e5934363e76
test_rest_find_limitµ
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
112
diff
changeset
|
3483 |
3e5934363e76
test_rest_find_limitµ
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
112
diff
changeset
|
3484 b = [] |
3e5934363e76
test_rest_find_limitµ
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
112
diff
changeset
|
3485 for i in range(4): |
3e5934363e76
test_rest_find_limitµ
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
112
diff
changeset
|
3486 a = DoPost(_REMOTE, '/tools/find', { 'Level' : 'Instance', |
3e5934363e76
test_rest_find_limitµ
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
112
diff
changeset
|
3487 'Query' : { 'PatientName' : 'B*' }, |
3e5934363e76
test_rest_find_limitµ
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
112
diff
changeset
|
3488 'Limit' : 1, |
3e5934363e76
test_rest_find_limitµ
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
112
diff
changeset
|
3489 'Since' : i }) |
3e5934363e76
test_rest_find_limitµ
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
112
diff
changeset
|
3490 self.assertEqual(1, len(a)) |
3e5934363e76
test_rest_find_limitµ
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
112
diff
changeset
|
3491 b.append(a[0]) |
3e5934363e76
test_rest_find_limitµ
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
112
diff
changeset
|
3492 |
3e5934363e76
test_rest_find_limitµ
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
112
diff
changeset
|
3493 # Check whether the two sets are equal through symmetric difference |
3e5934363e76
test_rest_find_limitµ
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
112
diff
changeset
|
3494 self.assertEqual(0, len(set(b) ^ set(brainix))) |
3e5934363e76
test_rest_find_limitµ
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
112
diff
changeset
|
3495 |
3e5934363e76
test_rest_find_limitµ
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
112
diff
changeset
|
3496 # Check using KNEE |
3e5934363e76
test_rest_find_limitµ
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
112
diff
changeset
|
3497 a = DoPost(_REMOTE, '/tools/find', { 'Level' : 'Instance', |
3e5934363e76
test_rest_find_limitµ
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
112
diff
changeset
|
3498 'Query' : { 'PatientName' : 'K*' }, |
3e5934363e76
test_rest_find_limitµ
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
112
diff
changeset
|
3499 'Limit' : 10 }) |
3e5934363e76
test_rest_find_limitµ
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
112
diff
changeset
|
3500 self.assertEqual(2, len(a)) |
3e5934363e76
test_rest_find_limitµ
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
112
diff
changeset
|
3501 |
3e5934363e76
test_rest_find_limitµ
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
112
diff
changeset
|
3502 a = DoPost(_REMOTE, '/tools/find', { 'Level' : 'Instance', |
3e5934363e76
test_rest_find_limitµ
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
112
diff
changeset
|
3503 'Query' : { 'PatientName' : 'K*' }, |
3e5934363e76
test_rest_find_limitµ
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
112
diff
changeset
|
3504 'Limit' : 2 }) |
3e5934363e76
test_rest_find_limitµ
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
112
diff
changeset
|
3505 self.assertEqual(2, len(a)) |
3e5934363e76
test_rest_find_limitµ
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
112
diff
changeset
|
3506 |
3e5934363e76
test_rest_find_limitµ
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
112
diff
changeset
|
3507 b = [] |
3e5934363e76
test_rest_find_limitµ
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
112
diff
changeset
|
3508 for i in range(2): |
3e5934363e76
test_rest_find_limitµ
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
112
diff
changeset
|
3509 a = DoPost(_REMOTE, '/tools/find', { 'Level' : 'Instance', |
3e5934363e76
test_rest_find_limitµ
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
112
diff
changeset
|
3510 'Query' : { 'PatientName' : 'K*' }, |
3e5934363e76
test_rest_find_limitµ
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
112
diff
changeset
|
3511 'Limit' : 1, |
3e5934363e76
test_rest_find_limitµ
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
112
diff
changeset
|
3512 'Since' : i }) |
3e5934363e76
test_rest_find_limitµ
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
112
diff
changeset
|
3513 self.assertEqual(1, len(a)) |
3e5934363e76
test_rest_find_limitµ
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
112
diff
changeset
|
3514 b.append(a[0]) |
3e5934363e76
test_rest_find_limitµ
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
112
diff
changeset
|
3515 |
3e5934363e76
test_rest_find_limitµ
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
112
diff
changeset
|
3516 self.assertEqual(0, len(set(b) ^ set(knee))) |
115
45ebfab035b7
test_bitbucket_issue_46
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
113
diff
changeset
|
3517 |
45ebfab035b7
test_bitbucket_issue_46
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
113
diff
changeset
|
3518 |
45ebfab035b7
test_bitbucket_issue_46
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
113
diff
changeset
|
3519 def test_bitbucket_issue_46(self): |
45ebfab035b7
test_bitbucket_issue_46
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
113
diff
changeset
|
3520 # "PHI remaining after anonymization" |
45ebfab035b7
test_bitbucket_issue_46
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
113
diff
changeset
|
3521 # https://bitbucket.org/sjodogne/orthanc/issues/46 |
45ebfab035b7
test_bitbucket_issue_46
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
113
diff
changeset
|
3522 |
45ebfab035b7
test_bitbucket_issue_46
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
113
diff
changeset
|
3523 def GetAnonymizedTags(study, version): |
45ebfab035b7
test_bitbucket_issue_46
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
113
diff
changeset
|
3524 anonymized = DoPost(_REMOTE, '/studies/%s/anonymize' % study, |
45ebfab035b7
test_bitbucket_issue_46
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
113
diff
changeset
|
3525 { 'DicomVersion' : version }, |
45ebfab035b7
test_bitbucket_issue_46
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
113
diff
changeset
|
3526 'application/json') ['ID'] |
45ebfab035b7
test_bitbucket_issue_46
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
113
diff
changeset
|
3527 a = DoGet(_REMOTE, '/studies/%s/instances' % anonymized) |
45ebfab035b7
test_bitbucket_issue_46
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
113
diff
changeset
|
3528 self.assertEqual(1, len(a)) |
45ebfab035b7
test_bitbucket_issue_46
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
113
diff
changeset
|
3529 |
45ebfab035b7
test_bitbucket_issue_46
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
113
diff
changeset
|
3530 instance = a[0]['ID'] |
45ebfab035b7
test_bitbucket_issue_46
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
113
diff
changeset
|
3531 |
45ebfab035b7
test_bitbucket_issue_46
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
113
diff
changeset
|
3532 return (instance, DoGet(_REMOTE, '/instances/%s/tags' % instance)) |
45ebfab035b7
test_bitbucket_issue_46
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
113
diff
changeset
|
3533 |
45ebfab035b7
test_bitbucket_issue_46
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
113
diff
changeset
|
3534 UploadInstance(_REMOTE, 'Issue44/Monochrome1.dcm') |
45ebfab035b7
test_bitbucket_issue_46
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
113
diff
changeset
|
3535 origStudy = '6068a14b-d4df27af-9ec22145-538772d8-74f228ff' |
45ebfab035b7
test_bitbucket_issue_46
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
113
diff
changeset
|
3536 |
45ebfab035b7
test_bitbucket_issue_46
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
113
diff
changeset
|
3537 # Add the 0032,1033 (Requesting Service) and the 0010,1060 |
45ebfab035b7
test_bitbucket_issue_46
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
113
diff
changeset
|
3538 # (Patient's Mother's Birth Name) tags |
45ebfab035b7
test_bitbucket_issue_46
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
113
diff
changeset
|
3539 newStudy = DoPost(_REMOTE, '/studies/%s/modify' % origStudy, |
45ebfab035b7
test_bitbucket_issue_46
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
113
diff
changeset
|
3540 '{"Replace":{"0010,1060":"OSIMIS","0032,1033":"MOTHER"}}', |
45ebfab035b7
test_bitbucket_issue_46
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
113
diff
changeset
|
3541 'application/json')['ID'] |
45ebfab035b7
test_bitbucket_issue_46
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
113
diff
changeset
|
3542 |
45ebfab035b7
test_bitbucket_issue_46
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
113
diff
changeset
|
3543 # Use Table E.1-1 from PS 3.15-2008 |
45ebfab035b7
test_bitbucket_issue_46
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
113
diff
changeset
|
3544 # https://raw.githubusercontent.com/jodogne/dicom-specification/master/2008/08_15pu.pdf |
45ebfab035b7
test_bitbucket_issue_46
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
113
diff
changeset
|
3545 (instance, tags) = GetAnonymizedTags(newStudy, "2008") |
45ebfab035b7
test_bitbucket_issue_46
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
113
diff
changeset
|
3546 self.assertTrue('0032,1033' in tags) |
45ebfab035b7
test_bitbucket_issue_46
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
113
diff
changeset
|
3547 self.assertTrue('0010,1060' in tags) |
45ebfab035b7
test_bitbucket_issue_46
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
113
diff
changeset
|
3548 |
45ebfab035b7
test_bitbucket_issue_46
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
113
diff
changeset
|
3549 # Use Table E.1-1 from PS 3.15-2011 (only if Orthanc >= 1.2.1) |
45ebfab035b7
test_bitbucket_issue_46
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
113
diff
changeset
|
3550 # https://raw.githubusercontent.com/jodogne/dicom-specification/master/2008/08_15pu.pdf |
45ebfab035b7
test_bitbucket_issue_46
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
113
diff
changeset
|
3551 (instance, tags) = GetAnonymizedTags(newStudy, "2017c") |
45ebfab035b7
test_bitbucket_issue_46
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
113
diff
changeset
|
3552 self.assertFalse('0032,1033' in tags) |
45ebfab035b7
test_bitbucket_issue_46
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
113
diff
changeset
|
3553 self.assertFalse('0010,1060' in tags) |
45ebfab035b7
test_bitbucket_issue_46
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
113
diff
changeset
|
3554 |
45ebfab035b7
test_bitbucket_issue_46
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
113
diff
changeset
|
3555 t = {} |
45ebfab035b7
test_bitbucket_issue_46
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
113
diff
changeset
|
3556 for (key, value) in tags.iteritems(): |
45ebfab035b7
test_bitbucket_issue_46
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
113
diff
changeset
|
3557 t[value['Name']] = value['Value'] |
45ebfab035b7
test_bitbucket_issue_46
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
113
diff
changeset
|
3558 |
45ebfab035b7
test_bitbucket_issue_46
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
113
diff
changeset
|
3559 self.assertEqual('', t['StudyDate']) # Type 1 tag => cleared |
45ebfab035b7
test_bitbucket_issue_46
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
113
diff
changeset
|
3560 self.assertEqual('', t['StudyTime']) # Type 1 tag => cleared |
45ebfab035b7
test_bitbucket_issue_46
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
113
diff
changeset
|
3561 self.assertEqual('', t['PatientSex']) # Type 1 tag => cleared |
45ebfab035b7
test_bitbucket_issue_46
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
113
diff
changeset
|
3562 self.assertFalse('SeriesDate' in t) # Type 3 tag => null |
45ebfab035b7
test_bitbucket_issue_46
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
113
diff
changeset
|
3563 self.assertFalse('SeriesTime' in t) # Type 3 tag => null |
45ebfab035b7
test_bitbucket_issue_46
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
113
diff
changeset
|
3564 |
45ebfab035b7
test_bitbucket_issue_46
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
113
diff
changeset
|
3565 with tempfile.NamedTemporaryFile(delete = True) as f: |
45ebfab035b7
test_bitbucket_issue_46
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
113
diff
changeset
|
3566 # Run "dciodvfy" on the anonymized file to be sure it is still valid |
45ebfab035b7
test_bitbucket_issue_46
Sebastien Jodogne <s.jodogne@gmail.com>
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113
diff
changeset
|
3567 f.write(DoGet(_REMOTE, '/instances/%s/file' % instance)) |
45ebfab035b7
test_bitbucket_issue_46
Sebastien Jodogne <s.jodogne@gmail.com>
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113
diff
changeset
|
3568 f.flush() |
45ebfab035b7
test_bitbucket_issue_46
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
113
diff
changeset
|
3569 subprocess.check_output([ FindExecutable('dciodvfy'), f.name ], |
45ebfab035b7
test_bitbucket_issue_46
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
113
diff
changeset
|
3570 stderr = subprocess.STDOUT).split('\n') |
118
a954c535fef6
test_bitbucket_issue_55
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
117
diff
changeset
|
3571 |
a954c535fef6
test_bitbucket_issue_55
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
117
diff
changeset
|
3572 |
a954c535fef6
test_bitbucket_issue_55
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
117
diff
changeset
|
3573 def test_bitbucket_issue_55(self): |
a954c535fef6
test_bitbucket_issue_55
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parents:
117
diff
changeset
|
3574 def Run(modify, query): |
a954c535fef6
test_bitbucket_issue_55
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
117
diff
changeset
|
3575 self.assertEqual(1, len(DoGet(_REMOTE, '/instances'))) |
a954c535fef6
test_bitbucket_issue_55
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
117
diff
changeset
|
3576 |
a954c535fef6
test_bitbucket_issue_55
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
117
diff
changeset
|
3577 operation = 'modify' if modify else 'anonymize' |
a954c535fef6
test_bitbucket_issue_55
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
117
diff
changeset
|
3578 |
a954c535fef6
test_bitbucket_issue_55
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
117
diff
changeset
|
3579 self.assertRaises(Exception, lambda: DoPost( |
a954c535fef6
test_bitbucket_issue_55
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
117
diff
changeset
|
3580 _REMOTE, '/studies/%s/%s' % (study, operation), query)) |
a954c535fef6
test_bitbucket_issue_55
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
117
diff
changeset
|
3581 self.assertEqual(1, len(DoGet(_REMOTE, '/instances'))) |
a954c535fef6
test_bitbucket_issue_55
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
117
diff
changeset
|
3582 |
a954c535fef6
test_bitbucket_issue_55
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
117
diff
changeset
|
3583 query["Force"] = True |
a954c535fef6
test_bitbucket_issue_55
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
117
diff
changeset
|
3584 a = DoPost(_REMOTE, '/studies/%s/%s' % (study, operation), query)['Path'] |
a954c535fef6
test_bitbucket_issue_55
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
117
diff
changeset
|
3585 self.assertEqual(2, len(DoGet(_REMOTE, '/instances'))) |
a954c535fef6
test_bitbucket_issue_55
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
117
diff
changeset
|
3586 DoDelete(_REMOTE, a) |
a954c535fef6
test_bitbucket_issue_55
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
117
diff
changeset
|
3587 |
a954c535fef6
test_bitbucket_issue_55
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
117
diff
changeset
|
3588 self.assertEqual(1, len(DoGet(_REMOTE, '/instances'))) |
a954c535fef6
test_bitbucket_issue_55
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
117
diff
changeset
|
3589 |
a954c535fef6
test_bitbucket_issue_55
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
117
diff
changeset
|
3590 UploadInstance(_REMOTE, 'DummyCT.dcm') |
a954c535fef6
test_bitbucket_issue_55
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
117
diff
changeset
|
3591 study = 'b9c08539-26f93bde-c81ab0d7-bffaf2cb-a4d0bdd0' |
a954c535fef6
test_bitbucket_issue_55
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
117
diff
changeset
|
3592 |
a954c535fef6
test_bitbucket_issue_55
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
117
diff
changeset
|
3593 Run(True, { "Replace" : { "StudyInstanceUID" : "world" } }) |
a954c535fef6
test_bitbucket_issue_55
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
117
diff
changeset
|
3594 Run(True, { "Replace" : { "SeriesInstanceUID" : "world" } }) |
a954c535fef6
test_bitbucket_issue_55
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
117
diff
changeset
|
3595 Run(True, { "Replace" : { "SOPInstanceUID" : "world" } }) |
a954c535fef6
test_bitbucket_issue_55
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
117
diff
changeset
|
3596 |
a954c535fef6
test_bitbucket_issue_55
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
117
diff
changeset
|
3597 Run(False, { "Keep" : [ "StudyInstanceUID" ]}) |
a954c535fef6
test_bitbucket_issue_55
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
117
diff
changeset
|
3598 Run(False, { "Keep" : [ "SeriesInstanceUID" ]}) |
a954c535fef6
test_bitbucket_issue_55
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
117
diff
changeset
|
3599 Run(False, { "Keep" : [ "SOPInstanceUID" ]}) |
a954c535fef6
test_bitbucket_issue_55
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
117
diff
changeset
|
3600 |
a954c535fef6
test_bitbucket_issue_55
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
117
diff
changeset
|
3601 Run(False, { "Replace" : { "StudyInstanceUID" : "world" } }) |
a954c535fef6
test_bitbucket_issue_55
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
117
diff
changeset
|
3602 Run(False, { "Replace" : { "SeriesInstanceUID" : "world" } }) |
a954c535fef6
test_bitbucket_issue_55
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
117
diff
changeset
|
3603 Run(False, { "Replace" : { "SOPInstanceUID" : "world" } }) |
a954c535fef6
test_bitbucket_issue_55
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
117
diff
changeset
|
3604 |
120
fce08afe6b2d
test_bitbucket_issue_56
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
119
diff
changeset
|
3605 |
fce08afe6b2d
test_bitbucket_issue_56
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
119
diff
changeset
|
3606 def test_bitbucket_issue_56(self): |
fce08afe6b2d
test_bitbucket_issue_56
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
119
diff
changeset
|
3607 # Case-insensitive matching over accents. This test assumes |
fce08afe6b2d
test_bitbucket_issue_56
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
119
diff
changeset
|
3608 # that the "CaseSensitivePN" configuration option of Orthanc |
fce08afe6b2d
test_bitbucket_issue_56
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
119
diff
changeset
|
3609 # is set to "false" (default value). |
fce08afe6b2d
test_bitbucket_issue_56
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
119
diff
changeset
|
3610 # https://bitbucket.org/sjodogne/orthanc/issues/56 |
fce08afe6b2d
test_bitbucket_issue_56
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
119
diff
changeset
|
3611 |
fce08afe6b2d
test_bitbucket_issue_56
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
119
diff
changeset
|
3612 def Check(name, expected, expectedSensitive): |
fce08afe6b2d
test_bitbucket_issue_56
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
119
diff
changeset
|
3613 a = CallFindScu([ '-k', '0008,0005=ISO_IR 192', # Use UTF-8 |
fce08afe6b2d
test_bitbucket_issue_56
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
119
diff
changeset
|
3614 '-k', '0008,0052=PATIENT', |
fce08afe6b2d
test_bitbucket_issue_56
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
119
diff
changeset
|
3615 '-k', 'PatientName=%s' % name ]) |
fce08afe6b2d
test_bitbucket_issue_56
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
119
diff
changeset
|
3616 patientNames = re.findall('\(0010,0010\).*?\[(.*?)\]', a) |
fce08afe6b2d
test_bitbucket_issue_56
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
119
diff
changeset
|
3617 self.assertEqual(expected, len(patientNames)) |
fce08afe6b2d
test_bitbucket_issue_56
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
119
diff
changeset
|
3618 |
fce08afe6b2d
test_bitbucket_issue_56
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
119
diff
changeset
|
3619 a = DoPost(_REMOTE, '/tools/find', { 'Level' : 'Patient', |
fce08afe6b2d
test_bitbucket_issue_56
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
119
diff
changeset
|
3620 'CaseSensitive' : False, |
fce08afe6b2d
test_bitbucket_issue_56
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
119
diff
changeset
|
3621 'Query' : { 'PatientName' : name }}) |
fce08afe6b2d
test_bitbucket_issue_56
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
119
diff
changeset
|
3622 self.assertEqual(expected, len(a)) |
fce08afe6b2d
test_bitbucket_issue_56
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
119
diff
changeset
|
3623 |
fce08afe6b2d
test_bitbucket_issue_56
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
119
diff
changeset
|
3624 a = DoPost(_REMOTE, '/tools/find', { 'Level' : 'Patient', |
fce08afe6b2d
test_bitbucket_issue_56
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
119
diff
changeset
|
3625 'CaseSensitive' : True, |
fce08afe6b2d
test_bitbucket_issue_56
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
119
diff
changeset
|
3626 'Query' : { 'PatientName' : name }}) |
fce08afe6b2d
test_bitbucket_issue_56
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
119
diff
changeset
|
3627 self.assertEqual(expectedSensitive, len(a)) |
fce08afe6b2d
test_bitbucket_issue_56
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
119
diff
changeset
|
3628 |
fce08afe6b2d
test_bitbucket_issue_56
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
119
diff
changeset
|
3629 UploadInstance(_REMOTE, 'Encodings/Lena-latin1.dcm') |
fce08afe6b2d
test_bitbucket_issue_56
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
119
diff
changeset
|
3630 |
fce08afe6b2d
test_bitbucket_issue_56
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
119
diff
changeset
|
3631 # WildcardConstraint |
fce08afe6b2d
test_bitbucket_issue_56
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
119
diff
changeset
|
3632 Check('TeSt*', 1, 0) |
fce08afe6b2d
test_bitbucket_issue_56
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
119
diff
changeset
|
3633 Check('TeSt-a*', 0, 0) |
fce08afe6b2d
test_bitbucket_issue_56
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
119
diff
changeset
|
3634 Check('TeSt-É*', 1, 0) |
fce08afe6b2d
test_bitbucket_issue_56
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
119
diff
changeset
|
3635 Check('TeSt-é*', 1, 0) |
fce08afe6b2d
test_bitbucket_issue_56
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
119
diff
changeset
|
3636 Check('Test-é*', 1, 1) |
fce08afe6b2d
test_bitbucket_issue_56
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
119
diff
changeset
|
3637 |
fce08afe6b2d
test_bitbucket_issue_56
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
119
diff
changeset
|
3638 # ListConstraint |
fce08afe6b2d
test_bitbucket_issue_56
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
119
diff
changeset
|
3639 Check('Test-éüäöò\\nope', 1, 1) |
fce08afe6b2d
test_bitbucket_issue_56
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
119
diff
changeset
|
3640 Check('Test-ÉÜÄÖÒ\\nope', 1, 0) |
fce08afe6b2d
test_bitbucket_issue_56
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
119
diff
changeset
|
3641 |
fce08afe6b2d
test_bitbucket_issue_56
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
119
diff
changeset
|
3642 # ValueConstraint |
fce08afe6b2d
test_bitbucket_issue_56
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
119
diff
changeset
|
3643 Check('Test-éüäöò', 1, 1) |
fce08afe6b2d
test_bitbucket_issue_56
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
119
diff
changeset
|
3644 Check('Test-ÉÜÄÖÒ', 1, 0) |
fce08afe6b2d
test_bitbucket_issue_56
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
119
diff
changeset
|
3645 |
125 | 3646 |
3647 def test_gbk_alias(self): | |
3648 # https://groups.google.com/d/msg/orthanc-users/WMM8LMbjpUc/02-1f_yFCgAJ | |
3649 # This test fails on Orthanc <= 1.3.0 | |
3650 i = UploadInstance(_REMOTE, '2017-09-19-GBK-Tumashu.dcm')['ID'] | |
3651 tags = DoGet(_REMOTE, '/instances/%s/tags?simplify' % i) | |
3652 self.assertEqual(tags['PatientName'], u'徐浩凯') | |
3653 self.assertEqual(tags['InstitutionName'], u'灌云县疾病预防控制中心') | |
126 | 3654 |
3655 | |
3656 def test_long_tag(self): | |
3657 i = UploadInstance(_REMOTE, 'DummyCTWithLongTag.dcm')['ID'] | |
3658 series = 'f2635388-f01d497a-15f7c06b-ad7dba06-c4c599fe' | |
3659 | |
3660 tags = DoGet(_REMOTE, '/instances/%s/tags' % i) | |
3661 self.assertTrue('0018,1020' in tags) | |
3662 self.assertEqual('SoftwareVersions', tags['0018,1020']['Name']) | |
3663 self.assertEqual('TooLong', tags['0018,1020']['Type']) | |
3664 self.assertEqual(None, tags['0018,1020']['Value']) | |
3665 | |
3666 tags = DoGet(_REMOTE, '/instances/%s/tags?ignore-length=0018-1020' % i) | |
3667 self.assertTrue('0018,1020' in tags) | |
3668 self.assertEqual('SoftwareVersions', tags['0018,1020']['Name']) | |
3669 self.assertEqual('String', tags['0018,1020']['Type']) | |
3670 self.assertTrue(tags['0018,1020']['Value'].startswith('Lorem ipsum dolor sit amet')) | |
3671 | |
3672 tags = DoGet(_REMOTE, '/instances/%s/tags?simplify' % i) | |
3673 self.assertTrue('SoftwareVersions' in tags) | |
3674 self.assertEqual(None, tags['SoftwareVersions']) | |
3675 self.assertTrue('HeartRate' in tags) | |
3676 self.assertEqual(474, int(tags['HeartRate'])) | |
3677 | |
3678 tags = DoGet(_REMOTE, '/instances/%s/simplified-tags' % i) | |
3679 self.assertTrue('SoftwareVersions' in tags) | |
3680 self.assertEqual(None, tags['SoftwareVersions']) | |
3681 | |
3682 tags = DoGet(_REMOTE, '/instances/%s/tags?simplify&ignore-length=0018-1020' % i) | |
3683 self.assertTrue('SoftwareVersions' in tags) | |
3684 self.assertTrue(tags['SoftwareVersions'].startswith('Lorem ipsum dolor sit amet')) | |
3685 | |
3686 tags = DoGet(_REMOTE, '/instances/%s/tags?simplify&ignore-length=SoftwareVersions' % i) | |
3687 self.assertTrue('SoftwareVersions' in tags) | |
3688 self.assertTrue(tags['SoftwareVersions'].startswith('Lorem ipsum dolor sit amet')) | |
3689 | |
3690 tags = DoGet(_REMOTE, '/series/%s/instances-tags' % series) | |
3691 self.assertEqual(1, len(tags)) | |
3692 self.assertTrue(i in tags.keys()) | |
3693 self.assertTrue('0018,1020' in tags[i]) | |
3694 self.assertEqual('TooLong', tags[i]['0018,1020']['Type']) | |
3695 | |
3696 tags = DoGet(_REMOTE, '/series/%s/instances-tags?ignore-length=SoftwareVersions' % series) | |
3697 self.assertEqual(1, len(tags)) | |
3698 self.assertTrue(i in tags.keys()) | |
3699 self.assertTrue('0018,1020' in tags[i]) | |
3700 self.assertEqual('String', tags[i]['0018,1020']['Type']) | |
3701 self.assertTrue(tags[i]['0018,1020']['Value'].startswith('Lorem ipsum dolor sit amet')) | |
3702 | |
127
1eea4d3a1ba9
test_extended_media
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
126
diff
changeset
|
3703 |
1eea4d3a1ba9
test_extended_media
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
126
diff
changeset
|
3704 def test_extended_media(self): |
1eea4d3a1ba9
test_extended_media
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
126
diff
changeset
|
3705 UploadInstance(_REMOTE, 'Knee/T1/IM-0001-0001.dcm') |
1eea4d3a1ba9
test_extended_media
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
126
diff
changeset
|
3706 |
1eea4d3a1ba9
test_extended_media
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
126
diff
changeset
|
3707 z = GetArchive(_REMOTE, '/patients/%s/media?extended' % DoGet(_REMOTE, '/patients')[0]) |
1eea4d3a1ba9
test_extended_media
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
126
diff
changeset
|
3708 self.assertEqual(2, len(z.namelist())) |
1eea4d3a1ba9
test_extended_media
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
126
diff
changeset
|
3709 self.assertTrue('IMAGES/IM0' in z.namelist()) |
1eea4d3a1ba9
test_extended_media
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
126
diff
changeset
|
3710 self.assertTrue('DICOMDIR' in z.namelist()) |
1eea4d3a1ba9
test_extended_media
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
126
diff
changeset
|
3711 |
1eea4d3a1ba9
test_extended_media
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
126
diff
changeset
|
3712 try: |
1eea4d3a1ba9
test_extended_media
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
126
diff
changeset
|
3713 os.remove('/tmp/DICOMDIR') |
1eea4d3a1ba9
test_extended_media
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
126
diff
changeset
|
3714 except: |
1eea4d3a1ba9
test_extended_media
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
126
diff
changeset
|
3715 # The file does not exist |
1eea4d3a1ba9
test_extended_media
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
126
diff
changeset
|
3716 pass |
1eea4d3a1ba9
test_extended_media
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
126
diff
changeset
|
3717 |
1eea4d3a1ba9
test_extended_media
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
126
diff
changeset
|
3718 z.extract('DICOMDIR', '/tmp') |
1eea4d3a1ba9
test_extended_media
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
126
diff
changeset
|
3719 a = subprocess.check_output([ FindExecutable('dciodvfy'), '/tmp/DICOMDIR' ], |
1eea4d3a1ba9
test_extended_media
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
126
diff
changeset
|
3720 stderr = subprocess.STDOUT).split('\n') |
1eea4d3a1ba9
test_extended_media
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
126
diff
changeset
|
3721 self.assertEqual(5, len(a)) |
1eea4d3a1ba9
test_extended_media
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
126
diff
changeset
|
3722 self.assertTrue(a[0].startswith('Warning')) |
1eea4d3a1ba9
test_extended_media
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
126
diff
changeset
|
3723 self.assertEqual('BasicDirectory', a[1]) |
1eea4d3a1ba9
test_extended_media
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
126
diff
changeset
|
3724 self.assertTrue('not present in standard DICOM IOD' in a[2]) |
1eea4d3a1ba9
test_extended_media
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
126
diff
changeset
|
3725 self.assertTrue('not present in standard DICOM IOD' in a[3]) |
1eea4d3a1ba9
test_extended_media
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
126
diff
changeset
|
3726 self.assertEqual('', a[4]) |
1eea4d3a1ba9
test_extended_media
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
126
diff
changeset
|
3727 |
1eea4d3a1ba9
test_extended_media
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
126
diff
changeset
|
3728 a = subprocess.check_output([ FindExecutable('dcentvfy'), '/tmp/DICOMDIR' ], |
1eea4d3a1ba9
test_extended_media
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
126
diff
changeset
|
3729 stderr = subprocess.STDOUT).split('\n') |
1eea4d3a1ba9
test_extended_media
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
126
diff
changeset
|
3730 self.assertEqual(1, len(a)) |
1eea4d3a1ba9
test_extended_media
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
126
diff
changeset
|
3731 self.assertEqual('', a[0]) |
1eea4d3a1ba9
test_extended_media
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
126
diff
changeset
|
3732 |
1eea4d3a1ba9
test_extended_media
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
126
diff
changeset
|
3733 a = subprocess.check_output([ FindExecutable('dcm2xml'), '/tmp/DICOMDIR' ]) |
1eea4d3a1ba9
test_extended_media
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
126
diff
changeset
|
3734 self.assertTrue(re.search('1.3.46.670589.11.17521.5.0.3124.2008081908590448738', a) != None) |
1eea4d3a1ba9
test_extended_media
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
126
diff
changeset
|
3735 |
1eea4d3a1ba9
test_extended_media
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
126
diff
changeset
|
3736 # Check the presence of the series description (extended tag) |
1eea4d3a1ba9
test_extended_media
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
126
diff
changeset
|
3737 self.assertTrue(re.search('T1W_aTSE', a) != None) |
1eea4d3a1ba9
test_extended_media
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
126
diff
changeset
|
3738 |
1eea4d3a1ba9
test_extended_media
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
126
diff
changeset
|
3739 os.remove('/tmp/DICOMDIR') |
1eea4d3a1ba9
test_extended_media
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
126
diff
changeset
|
3740 |
1eea4d3a1ba9
test_extended_media
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
126
diff
changeset
|
3741 |
132
149144d854bb
Orthanc.test_anonymize_relationships_1/2
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
130
diff
changeset
|
3742 def test_anonymize_relationships_1(self): |
133
f0d4c4707e64
test_anonymize_relationships_3
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
132
diff
changeset
|
3743 UploadInstance(_REMOTE, 'Knee/T1/IM-0001-0001.dcm') |
f0d4c4707e64
test_anonymize_relationships_3
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
132
diff
changeset
|
3744 UploadInstance(_REMOTE, 'Knee/T1/IM-0001-0002.dcm') |
132
149144d854bb
Orthanc.test_anonymize_relationships_1/2
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
130
diff
changeset
|
3745 study = '0a9b3153-2512774b-2d9580de-1fc3dcf6-3bd83918' |
149144d854bb
Orthanc.test_anonymize_relationships_1/2
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
130
diff
changeset
|
3746 |
149144d854bb
Orthanc.test_anonymize_relationships_1/2
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
130
diff
changeset
|
3747 anonymized = DoPost(_REMOTE, '/studies/%s/anonymize' % study, |
149144d854bb
Orthanc.test_anonymize_relationships_1/2
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
130
diff
changeset
|
3748 '{}', |
149144d854bb
Orthanc.test_anonymize_relationships_1/2
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
130
diff
changeset
|
3749 'application/json')['ID'] |
149144d854bb
Orthanc.test_anonymize_relationships_1/2
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
130
diff
changeset
|
3750 |
149144d854bb
Orthanc.test_anonymize_relationships_1/2
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
130
diff
changeset
|
3751 a = DoGet(_REMOTE, '/studies/%s/instances' % study) |
149144d854bb
Orthanc.test_anonymize_relationships_1/2
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
130
diff
changeset
|
3752 self.assertEqual(2, len(a)) |
149144d854bb
Orthanc.test_anonymize_relationships_1/2
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
130
diff
changeset
|
3753 a1 = a[0]['ID'] |
149144d854bb
Orthanc.test_anonymize_relationships_1/2
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
130
diff
changeset
|
3754 a2 = a[1]['ID'] |
149144d854bb
Orthanc.test_anonymize_relationships_1/2
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
130
diff
changeset
|
3755 |
149144d854bb
Orthanc.test_anonymize_relationships_1/2
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
130
diff
changeset
|
3756 b = DoGet(_REMOTE, '/studies/%s/instances' % anonymized) |
149144d854bb
Orthanc.test_anonymize_relationships_1/2
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
130
diff
changeset
|
3757 self.assertEqual(2, len(b)) |
149144d854bb
Orthanc.test_anonymize_relationships_1/2
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
130
diff
changeset
|
3758 b1 = b[0]['ID'] |
149144d854bb
Orthanc.test_anonymize_relationships_1/2
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
130
diff
changeset
|
3759 b2 = b[1]['ID'] |
149144d854bb
Orthanc.test_anonymize_relationships_1/2
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
130
diff
changeset
|
3760 |
149144d854bb
Orthanc.test_anonymize_relationships_1/2
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
130
diff
changeset
|
3761 SEQUENCE = '/instances/%s/content/ReferencedImageSequence' |
149144d854bb
Orthanc.test_anonymize_relationships_1/2
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
130
diff
changeset
|
3762 SOP = '/instances/%s/content/ReferencedImageSequence/%d/ReferencedSOPInstanceUID' |
149144d854bb
Orthanc.test_anonymize_relationships_1/2
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
130
diff
changeset
|
3763 CLASS = '/instances/%s/content/ReferencedImageSequence/%d/ReferencedSOPClassUID' |
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Orthanc.test_anonymize_relationships_1/2
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
130
diff
changeset
|
3764 FRAME = '/instances/%s/content/FrameOfReferenceUID' |
149144d854bb
Orthanc.test_anonymize_relationships_1/2
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
130
diff
changeset
|
3765 |
149144d854bb
Orthanc.test_anonymize_relationships_1/2
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
130
diff
changeset
|
3766 self.assertEqual(DoGet(_REMOTE, FRAME % a1), |
149144d854bb
Orthanc.test_anonymize_relationships_1/2
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
130
diff
changeset
|
3767 DoGet(_REMOTE, FRAME % a2)) |
149144d854bb
Orthanc.test_anonymize_relationships_1/2
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
130
diff
changeset
|
3768 self.assertEqual(DoGet(_REMOTE, FRAME % b1), |
149144d854bb
Orthanc.test_anonymize_relationships_1/2
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
130
diff
changeset
|
3769 DoGet(_REMOTE, FRAME % b2)) |
149144d854bb
Orthanc.test_anonymize_relationships_1/2
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
130
diff
changeset
|
3770 self.assertNotEqual(DoGet(_REMOTE, FRAME % a1), |
149144d854bb
Orthanc.test_anonymize_relationships_1/2
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
130
diff
changeset
|
3771 DoGet(_REMOTE, FRAME % b1)) |
149144d854bb
Orthanc.test_anonymize_relationships_1/2
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
130
diff
changeset
|
3772 self.assertNotEqual(DoGet(_REMOTE, FRAME % a2), |
149144d854bb
Orthanc.test_anonymize_relationships_1/2
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
130
diff
changeset
|
3773 DoGet(_REMOTE, FRAME % b2)) |
149144d854bb
Orthanc.test_anonymize_relationships_1/2
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
130
diff
changeset
|
3774 |
149144d854bb
Orthanc.test_anonymize_relationships_1/2
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
130
diff
changeset
|
3775 self.assertEqual(3, len(DoGet(_REMOTE, SEQUENCE % a1))) |
149144d854bb
Orthanc.test_anonymize_relationships_1/2
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
130
diff
changeset
|
3776 self.assertEqual(3, len(DoGet(_REMOTE, SEQUENCE % a2))) |
149144d854bb
Orthanc.test_anonymize_relationships_1/2
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
130
diff
changeset
|
3777 self.assertEqual(3, len(DoGet(_REMOTE, SEQUENCE % b1))) |
149144d854bb
Orthanc.test_anonymize_relationships_1/2
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
130
diff
changeset
|
3778 self.assertEqual(3, len(DoGet(_REMOTE, SEQUENCE % b2))) |
149144d854bb
Orthanc.test_anonymize_relationships_1/2
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
130
diff
changeset
|
3779 |
149144d854bb
Orthanc.test_anonymize_relationships_1/2
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
130
diff
changeset
|
3780 for i in range(3): |
149144d854bb
Orthanc.test_anonymize_relationships_1/2
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
130
diff
changeset
|
3781 self.assertEqual(DoGet(_REMOTE, SOP % (a1, i)), |
149144d854bb
Orthanc.test_anonymize_relationships_1/2
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
130
diff
changeset
|
3782 DoGet(_REMOTE, SOP % (a2, i))) |
149144d854bb
Orthanc.test_anonymize_relationships_1/2
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
130
diff
changeset
|
3783 self.assertEqual(DoGet(_REMOTE, SOP % (b1, i)), |
149144d854bb
Orthanc.test_anonymize_relationships_1/2
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
130
diff
changeset
|
3784 DoGet(_REMOTE, SOP % (b2, i))) |
149144d854bb
Orthanc.test_anonymize_relationships_1/2
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
130
diff
changeset
|
3785 self.assertNotEqual(DoGet(_REMOTE, SOP % (a1, i)), |
149144d854bb
Orthanc.test_anonymize_relationships_1/2
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
130
diff
changeset
|
3786 DoGet(_REMOTE, SOP % (b1, i))) |
149144d854bb
Orthanc.test_anonymize_relationships_1/2
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
130
diff
changeset
|
3787 self.assertNotEqual(DoGet(_REMOTE, SOP % (a2, i)), |
149144d854bb
Orthanc.test_anonymize_relationships_1/2
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
130
diff
changeset
|
3788 DoGet(_REMOTE, SOP % (b2, i))) |
149144d854bb
Orthanc.test_anonymize_relationships_1/2
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
130
diff
changeset
|
3789 self.assertEqual(DoGet(_REMOTE, CLASS % (a1, i)), |
149144d854bb
Orthanc.test_anonymize_relationships_1/2
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
130
diff
changeset
|
3790 DoGet(_REMOTE, CLASS % (b1, i))) |
149144d854bb
Orthanc.test_anonymize_relationships_1/2
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
130
diff
changeset
|
3791 self.assertEqual(DoGet(_REMOTE, CLASS % (a2, i)), |
149144d854bb
Orthanc.test_anonymize_relationships_1/2
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
130
diff
changeset
|
3792 DoGet(_REMOTE, CLASS % (b2, i))) |
149144d854bb
Orthanc.test_anonymize_relationships_1/2
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
130
diff
changeset
|
3793 |
149144d854bb
Orthanc.test_anonymize_relationships_1/2
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
130
diff
changeset
|
3794 |
149144d854bb
Orthanc.test_anonymize_relationships_1/2
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
130
diff
changeset
|
3795 def test_anonymize_relationships_2(self): |
133
f0d4c4707e64
test_anonymize_relationships_3
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
132
diff
changeset
|
3796 UploadInstance(_REMOTE, 'Comunix/Ct/IM-0001-0001.dcm') |
f0d4c4707e64
test_anonymize_relationships_3
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
132
diff
changeset
|
3797 UploadInstance(_REMOTE, 'Comunix/Ct/IM-0001-0002.dcm') |
132
149144d854bb
Orthanc.test_anonymize_relationships_1/2
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
130
diff
changeset
|
3798 study = '6c65289b-db2fcb71-7eaf73f4-8e12470c-a4d6d7cf' |
149144d854bb
Orthanc.test_anonymize_relationships_1/2
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
130
diff
changeset
|
3799 |
149144d854bb
Orthanc.test_anonymize_relationships_1/2
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
130
diff
changeset
|
3800 anonymized = DoPost(_REMOTE, '/studies/%s/anonymize' % study, |
149144d854bb
Orthanc.test_anonymize_relationships_1/2
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
130
diff
changeset
|
3801 '{}', |
149144d854bb
Orthanc.test_anonymize_relationships_1/2
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
130
diff
changeset
|
3802 'application/json')['ID'] |
149144d854bb
Orthanc.test_anonymize_relationships_1/2
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
130
diff
changeset
|
3803 |
149144d854bb
Orthanc.test_anonymize_relationships_1/2
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
130
diff
changeset
|
3804 a = DoGet(_REMOTE, '/studies/%s/instances' % study) |
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Orthanc.test_anonymize_relationships_1/2
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parents:
130
diff
changeset
|
3805 self.assertEqual(2, len(a)) |
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Orthanc.test_anonymize_relationships_1/2
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
130
diff
changeset
|
3806 a1 = a[0]['ID'] |
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Orthanc.test_anonymize_relationships_1/2
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parents:
130
diff
changeset
|
3807 a2 = a[1]['ID'] |
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Orthanc.test_anonymize_relationships_1/2
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
130
diff
changeset
|
3808 |
149144d854bb
Orthanc.test_anonymize_relationships_1/2
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parents:
130
diff
changeset
|
3809 b = DoGet(_REMOTE, '/studies/%s/instances' % anonymized) |
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Orthanc.test_anonymize_relationships_1/2
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parents:
130
diff
changeset
|
3810 self.assertEqual(2, len(b)) |
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Orthanc.test_anonymize_relationships_1/2
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parents:
130
diff
changeset
|
3811 b1 = b[0]['ID'] |
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parents:
130
diff
changeset
|
3812 b2 = b[1]['ID'] |
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Orthanc.test_anonymize_relationships_1/2
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130
diff
changeset
|
3813 |
149144d854bb
Orthanc.test_anonymize_relationships_1/2
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parents:
130
diff
changeset
|
3814 SEQUENCE = '/instances/%s/content/SourceImageSequence' |
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parents:
130
diff
changeset
|
3815 SOP = '/instances/%s/content/SourceImageSequence/%d/ReferencedSOPInstanceUID' |
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130
diff
changeset
|
3816 CLASS = '/instances/%s/content/SourceImageSequence/%d/ReferencedSOPClassUID' |
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Sebastien Jodogne <s.jodogne@gmail.com>
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130
diff
changeset
|
3817 |
149144d854bb
Orthanc.test_anonymize_relationships_1/2
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
130
diff
changeset
|
3818 self.assertEqual(1, len(DoGet(_REMOTE, SEQUENCE % a1))) |
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Orthanc.test_anonymize_relationships_1/2
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parents:
130
diff
changeset
|
3819 self.assertEqual(1, len(DoGet(_REMOTE, SEQUENCE % a2))) |
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Orthanc.test_anonymize_relationships_1/2
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parents:
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diff
changeset
|
3820 self.assertEqual(1, len(DoGet(_REMOTE, SEQUENCE % b1))) |
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parents:
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diff
changeset
|
3821 self.assertEqual(1, len(DoGet(_REMOTE, SEQUENCE % b2))) |
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diff
changeset
|
3822 self.assertEqual(DoGet(_REMOTE, SOP % (a1, 0)), |
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parents:
130
diff
changeset
|
3823 DoGet(_REMOTE, SOP % (a2, 0))) |
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diff
changeset
|
3824 self.assertEqual(DoGet(_REMOTE, SOP % (b1, 0)), |
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parents:
130
diff
changeset
|
3825 DoGet(_REMOTE, SOP % (b2, 0))) |
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Orthanc.test_anonymize_relationships_1/2
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
130
diff
changeset
|
3826 self.assertNotEqual(DoGet(_REMOTE, SOP % (a1, 0)), |
149144d854bb
Orthanc.test_anonymize_relationships_1/2
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
130
diff
changeset
|
3827 DoGet(_REMOTE, SOP % (b1, 0))) |
149144d854bb
Orthanc.test_anonymize_relationships_1/2
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
130
diff
changeset
|
3828 self.assertNotEqual(DoGet(_REMOTE, SOP % (a2, 0)), |
149144d854bb
Orthanc.test_anonymize_relationships_1/2
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
130
diff
changeset
|
3829 DoGet(_REMOTE, SOP % (b2, 0))) |
149144d854bb
Orthanc.test_anonymize_relationships_1/2
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
130
diff
changeset
|
3830 self.assertEqual(DoGet(_REMOTE, CLASS % (a1, 0)), |
149144d854bb
Orthanc.test_anonymize_relationships_1/2
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
130
diff
changeset
|
3831 DoGet(_REMOTE, CLASS % (b1, 0))) |
149144d854bb
Orthanc.test_anonymize_relationships_1/2
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
130
diff
changeset
|
3832 self.assertEqual(DoGet(_REMOTE, CLASS % (a2, 0)), |
149144d854bb
Orthanc.test_anonymize_relationships_1/2
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
130
diff
changeset
|
3833 DoGet(_REMOTE, CLASS % (b2, 0))) |
133
f0d4c4707e64
test_anonymize_relationships_3
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
132
diff
changeset
|
3834 |
f0d4c4707e64
test_anonymize_relationships_3
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
132
diff
changeset
|
3835 |
f0d4c4707e64
test_anonymize_relationships_3
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
132
diff
changeset
|
3836 def test_anonymize_relationships_3(self): |
f0d4c4707e64
test_anonymize_relationships_3
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
132
diff
changeset
|
3837 sr1 = UploadInstance(_REMOTE, 'HierarchicalAnonymization/StructuredReports/IM0')['ID'] |
f0d4c4707e64
test_anonymize_relationships_3
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
132
diff
changeset
|
3838 mr1 = UploadInstance(_REMOTE, 'HierarchicalAnonymization/StructuredReports/IM631')['ID'] |
f0d4c4707e64
test_anonymize_relationships_3
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
132
diff
changeset
|
3839 study = 'ef351eb2-c1147229-062736b8-35a151e3-e32d526b' |
f0d4c4707e64
test_anonymize_relationships_3
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
132
diff
changeset
|
3840 |
f0d4c4707e64
test_anonymize_relationships_3
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
132
diff
changeset
|
3841 anonymized = DoPost(_REMOTE, '/studies/%s/anonymize' % study, |
f0d4c4707e64
test_anonymize_relationships_3
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
132
diff
changeset
|
3842 { "Keep" : [ "ContentSequence" ] }) ['ID'] |
f0d4c4707e64
test_anonymize_relationships_3
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
132
diff
changeset
|
3843 |
f0d4c4707e64
test_anonymize_relationships_3
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
132
diff
changeset
|
3844 a = DoGet(_REMOTE, '/studies/%s/instances' % anonymized) |
f0d4c4707e64
test_anonymize_relationships_3
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
132
diff
changeset
|
3845 self.assertEqual(2, len(a)) |
f0d4c4707e64
test_anonymize_relationships_3
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
132
diff
changeset
|
3846 |
f0d4c4707e64
test_anonymize_relationships_3
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
132
diff
changeset
|
3847 if DoGet(_REMOTE, '/instances/%s/content/Modality' % a[0]['ID']) == 'SR': |
f0d4c4707e64
test_anonymize_relationships_3
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
132
diff
changeset
|
3848 sr2 = a[0]['ID'] |
f0d4c4707e64
test_anonymize_relationships_3
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
132
diff
changeset
|
3849 mr2 = a[1]['ID'] |
f0d4c4707e64
test_anonymize_relationships_3
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
132
diff
changeset
|
3850 else: |
f0d4c4707e64
test_anonymize_relationships_3
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
132
diff
changeset
|
3851 sr2 = a[1]['ID'] |
f0d4c4707e64
test_anonymize_relationships_3
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
132
diff
changeset
|
3852 mr2 = a[0]['ID'] |
f0d4c4707e64
test_anonymize_relationships_3
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
132
diff
changeset
|
3853 |
f0d4c4707e64
test_anonymize_relationships_3
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
132
diff
changeset
|
3854 self.assertEqual(DoGet(_REMOTE, '/instances/%s/content/Modality' % sr1), |
f0d4c4707e64
test_anonymize_relationships_3
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
132
diff
changeset
|
3855 DoGet(_REMOTE, '/instances/%s/content/Modality' % sr2)) |
f0d4c4707e64
test_anonymize_relationships_3
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
132
diff
changeset
|
3856 self.assertEqual(DoGet(_REMOTE, '/instances/%s/content/Modality' % mr1), |
f0d4c4707e64
test_anonymize_relationships_3
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
132
diff
changeset
|
3857 DoGet(_REMOTE, '/instances/%s/content/Modality' % mr2)) |
f0d4c4707e64
test_anonymize_relationships_3
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
132
diff
changeset
|
3858 |
f0d4c4707e64
test_anonymize_relationships_3
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
132
diff
changeset
|
3859 mrUid1 = DoGet(_REMOTE, '/instances/%s' % mr1)['MainDicomTags']['SOPInstanceUID'] |
f0d4c4707e64
test_anonymize_relationships_3
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
132
diff
changeset
|
3860 mrUid2 = DoGet(_REMOTE, '/instances/%s' % mr2)['MainDicomTags']['SOPInstanceUID'] |
f0d4c4707e64
test_anonymize_relationships_3
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
132
diff
changeset
|
3861 mrSeries1 = DoGet(_REMOTE, '/instances/%s/content/SeriesInstanceUID' % mr1).strip('\x00') |
f0d4c4707e64
test_anonymize_relationships_3
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
132
diff
changeset
|
3862 mrSeries2 = DoGet(_REMOTE, '/instances/%s/content/SeriesInstanceUID' % mr2).strip('\x00') |
f0d4c4707e64
test_anonymize_relationships_3
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
132
diff
changeset
|
3863 mrStudy1 = DoGet(_REMOTE, '/instances/%s/content/StudyInstanceUID' % mr1).strip('\x00') |
f0d4c4707e64
test_anonymize_relationships_3
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
132
diff
changeset
|
3864 mrStudy2 = DoGet(_REMOTE, '/instances/%s/content/StudyInstanceUID' % mr2).strip('\x00') |
f0d4c4707e64
test_anonymize_relationships_3
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
132
diff
changeset
|
3865 |
f0d4c4707e64
test_anonymize_relationships_3
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
132
diff
changeset
|
3866 PATH1 = '/instances/%s/content/CurrentRequestedProcedureEvidenceSequence' |
f0d4c4707e64
test_anonymize_relationships_3
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
132
diff
changeset
|
3867 PATH2 = PATH1 + '/0/ReferencedSeriesSequence' |
f0d4c4707e64
test_anonymize_relationships_3
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
132
diff
changeset
|
3868 PATH3 = PATH2 + '/0/ReferencedSOPSequence' |
f0d4c4707e64
test_anonymize_relationships_3
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
132
diff
changeset
|
3869 PATH4 = PATH3 + '/0/ReferencedSOPInstanceUID' |
f0d4c4707e64
test_anonymize_relationships_3
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
132
diff
changeset
|
3870 PATH5 = PATH3 + '/0/ReferencedSOPClassUID' |
f0d4c4707e64
test_anonymize_relationships_3
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
132
diff
changeset
|
3871 |
f0d4c4707e64
test_anonymize_relationships_3
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
132
diff
changeset
|
3872 self.assertEqual(1, len(DoGet(_REMOTE, PATH1 % sr1))) |
f0d4c4707e64
test_anonymize_relationships_3
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
132
diff
changeset
|
3873 self.assertEqual(1, len(DoGet(_REMOTE, PATH2 % sr1))) |
f0d4c4707e64
test_anonymize_relationships_3
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
132
diff
changeset
|
3874 self.assertEqual(1, len(DoGet(_REMOTE, PATH3 % sr1))) |
f0d4c4707e64
test_anonymize_relationships_3
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
132
diff
changeset
|
3875 self.assertEqual(DoGet(_REMOTE, PATH4 % sr1), mrUid1) |
f0d4c4707e64
test_anonymize_relationships_3
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
132
diff
changeset
|
3876 self.assertEqual(mrSeries1, DoGet(_REMOTE, (PATH2 + '/0/SeriesInstanceUID') % sr1).strip('\x00')) |
f0d4c4707e64
test_anonymize_relationships_3
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
132
diff
changeset
|
3877 self.assertEqual(mrStudy1, DoGet(_REMOTE, (PATH1 + '/0/StudyInstanceUID') % sr1).strip('\x00')) |
f0d4c4707e64
test_anonymize_relationships_3
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
132
diff
changeset
|
3878 |
f0d4c4707e64
test_anonymize_relationships_3
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
132
diff
changeset
|
3879 self.assertEqual(1, len(DoGet(_REMOTE, PATH1 % sr2))) |
f0d4c4707e64
test_anonymize_relationships_3
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
132
diff
changeset
|
3880 self.assertEqual(1, len(DoGet(_REMOTE, PATH2 % sr2))) |
f0d4c4707e64
test_anonymize_relationships_3
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
132
diff
changeset
|
3881 self.assertEqual(1, len(DoGet(_REMOTE, PATH3 % sr2))) |
f0d4c4707e64
test_anonymize_relationships_3
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
132
diff
changeset
|
3882 self.assertEqual(DoGet(_REMOTE, PATH5 % sr1), DoGet(_REMOTE, PATH5 % sr2)) |
f0d4c4707e64
test_anonymize_relationships_3
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
132
diff
changeset
|
3883 |
f0d4c4707e64
test_anonymize_relationships_3
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
132
diff
changeset
|
3884 self.assertEqual(mrUid2, DoGet(_REMOTE, PATH4 % sr2).strip('\x00')) |
f0d4c4707e64
test_anonymize_relationships_3
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
132
diff
changeset
|
3885 self.assertEqual(mrSeries2, DoGet(_REMOTE, (PATH2 + '/0/SeriesInstanceUID') % sr2).strip('\x00')) |
f0d4c4707e64
test_anonymize_relationships_3
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
132
diff
changeset
|
3886 self.assertEqual(mrStudy2, DoGet(_REMOTE, (PATH1 + '/0/StudyInstanceUID') % sr2).strip('\x00')) |
f0d4c4707e64
test_anonymize_relationships_3
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
132
diff
changeset
|
3887 |
f0d4c4707e64
test_anonymize_relationships_3
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
132
diff
changeset
|
3888 content1 = DoGet(_REMOTE, '/instances/%s/tags?simplify' % sr1) ['ContentSequence'] |
f0d4c4707e64
test_anonymize_relationships_3
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
132
diff
changeset
|
3889 content2 = DoGet(_REMOTE, '/instances/%s/tags?simplify' % sr2) ['ContentSequence'] |
f0d4c4707e64
test_anonymize_relationships_3
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
132
diff
changeset
|
3890 self.assertEqual(str(content1), str(content2)) |
141
5de178abe4d8
test_bitbucket_issue_94
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
138
diff
changeset
|
3891 |
5de178abe4d8
test_bitbucket_issue_94
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
138
diff
changeset
|
3892 |
5de178abe4d8
test_bitbucket_issue_94
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
138
diff
changeset
|
3893 def test_bitbucket_issue_94(self): |
5de178abe4d8
test_bitbucket_issue_94
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
138
diff
changeset
|
3894 # "a simple instance modification should not modify FrameOfReferenceUID + ..." |
5de178abe4d8
test_bitbucket_issue_94
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
138
diff
changeset
|
3895 # https://bitbucket.org/sjodogne/orthanc/issues/94 |
5de178abe4d8
test_bitbucket_issue_94
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
138
diff
changeset
|
3896 i = UploadInstance(_REMOTE, 'Issue94.dcm')['ID'] |
5de178abe4d8
test_bitbucket_issue_94
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
138
diff
changeset
|
3897 |
5de178abe4d8
test_bitbucket_issue_94
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
138
diff
changeset
|
3898 source = DoGet(_REMOTE, '/instances/%s/attachments/dicom/data' % i) |
5de178abe4d8
test_bitbucket_issue_94
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
138
diff
changeset
|
3899 |
5de178abe4d8
test_bitbucket_issue_94
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
138
diff
changeset
|
3900 modified = DoPost(_REMOTE, '/instances/%s/modify' % i, |
5de178abe4d8
test_bitbucket_issue_94
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
138
diff
changeset
|
3901 { "Replace" : {"PatientID" : "toto"}, "Force": True}) |
5de178abe4d8
test_bitbucket_issue_94
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
138
diff
changeset
|
3902 |
5de178abe4d8
test_bitbucket_issue_94
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
138
diff
changeset
|
3903 anonymized = DoPost(_REMOTE, '/instances/%s/anonymize' % i) |
5de178abe4d8
test_bitbucket_issue_94
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
138
diff
changeset
|
3904 |
5de178abe4d8
test_bitbucket_issue_94
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
138
diff
changeset
|
3905 a = ExtractDicomTags(source, [ 'FrameOfReferenceUID' ]) |
5de178abe4d8
test_bitbucket_issue_94
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
138
diff
changeset
|
3906 self.assertEqual(1, len(a)) |
5de178abe4d8
test_bitbucket_issue_94
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
138
diff
changeset
|
3907 |
5de178abe4d8
test_bitbucket_issue_94
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
138
diff
changeset
|
3908 b = ExtractDicomTags(modified, [ 'FrameOfReferenceUID' ]) |
5de178abe4d8
test_bitbucket_issue_94
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
138
diff
changeset
|
3909 self.assertEqual(1, len(b)) |
5de178abe4d8
test_bitbucket_issue_94
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
138
diff
changeset
|
3910 |
5de178abe4d8
test_bitbucket_issue_94
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
138
diff
changeset
|
3911 c = ExtractDicomTags(anonymized, [ 'FrameOfReferenceUID' ]) |
5de178abe4d8
test_bitbucket_issue_94
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
138
diff
changeset
|
3912 self.assertEqual(1, len(c)) |
5de178abe4d8
test_bitbucket_issue_94
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
138
diff
changeset
|
3913 |
5de178abe4d8
test_bitbucket_issue_94
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
138
diff
changeset
|
3914 self.assertEqual(a, b) # Modified DICOM |
5de178abe4d8
test_bitbucket_issue_94
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
138
diff
changeset
|
3915 self.assertNotEqual(a, c) # Anonymized DICOM |
143
28d50ffac07d
test_metadata_origin
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
142
diff
changeset
|
3916 |
28d50ffac07d
test_metadata_origin
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
142
diff
changeset
|
3917 |
28d50ffac07d
test_metadata_origin
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
142
diff
changeset
|
3918 def test_metadata_origin(self): |
28d50ffac07d
test_metadata_origin
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
142
diff
changeset
|
3919 # Upload using the REST API |
144
7809fdf8056f
testing metadata?expand
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
143
diff
changeset
|
3920 i = UploadInstance(_REMOTE, 'Knee/T1/IM-0001-0001.dcm')['ID'] |
143
28d50ffac07d
test_metadata_origin
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
142
diff
changeset
|
3921 self.assertEqual('RestApi', DoGet(_REMOTE, '/instances/%s/metadata/Origin' % i)) |
28d50ffac07d
test_metadata_origin
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
142
diff
changeset
|
3922 self.assertEqual('', DoGet(_REMOTE, '/instances/%s/metadata/RemoteAET' % i)) |
28d50ffac07d
test_metadata_origin
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
142
diff
changeset
|
3923 self.assertNotEqual('', DoGet(_REMOTE, '/instances/%s/metadata/RemoteIP' % i)) |
28d50ffac07d
test_metadata_origin
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
142
diff
changeset
|
3924 self.assertRaises(Exception, lambda: DoGet(_REMOTE, '/instances/%s/metadata/CalledAET' % i)) |
28d50ffac07d
test_metadata_origin
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
142
diff
changeset
|
3925 self.assertEqual('alice', DoGet(_REMOTE, '/instances/%s/metadata/HttpUsername' % i)) |
28d50ffac07d
test_metadata_origin
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
142
diff
changeset
|
3926 |
144
7809fdf8056f
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3927 m = DoGet(_REMOTE, '/instances/%s/metadata?expand' % i) |
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3928 self.assertEqual('RestApi', m['Origin']) |
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3929 self.assertEqual('', m['RemoteAET']) |
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3930 self.assertNotEqual('', m['RemoteIP']) |
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3931 self.assertFalse('CalledAET' in m) |
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3932 self.assertEqual('alice', m['HttpUsername']) |
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3933 |
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3934 self.assertEqual('1.2.840.10008.1.2.4.91', m['TransferSyntax']) |
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3935 self.assertEqual('1.2.840.10008.5.1.4.1.1.4', m['SopClassUid']) |
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3936 self.assertEqual('1', m['IndexInSeries']) |
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3937 self.assertTrue('ReceptionDate' in m) |
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3938 |
143
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3939 DoDelete(_REMOTE, '/instances/%s' % i) |
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3940 |
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3941 # Upload using the DICOM protocol |
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3942 subprocess.check_call([ FindExecutable('storescu'), |
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3943 _REMOTE['Server'], str(_REMOTE['DicomPort']), |
144
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3944 GetDatabasePath('Knee/T1/IM-0001-0001.dcm'), |
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3945 '-xw' ]) # Propose JPEG2000 |
143
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3946 self.assertEqual('DicomProtocol', DoGet(_REMOTE, '/instances/%s/metadata/Origin' % i)) |
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3947 self.assertEqual('STORESCU', DoGet(_REMOTE, '/instances/%s/metadata/RemoteAET' % i)) |
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3948 self.assertNotEqual('', DoGet(_REMOTE, '/instances/%s/metadata/RemoteIP' % i)) |
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3949 self.assertEqual('ANY-SCP', DoGet(_REMOTE, '/instances/%s/metadata/CalledAET' % i)) |
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3950 self.assertRaises(Exception, lambda: DoGet(_REMOTE, '/instances/%s/metadata/HttpUsername' % i)) |
144
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3951 |
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3952 m = DoGet(_REMOTE, '/instances/%s/metadata?expand' % i) |
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3953 self.assertEqual('DicomProtocol', m['Origin']) |
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3954 self.assertEqual('STORESCU', m['RemoteAET']) |
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3955 self.assertNotEqual('', m['RemoteIP']) |
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3956 self.assertEqual('ANY-SCP', m['CalledAET']) |
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3957 self.assertFalse('HttpUsername' in m) |
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3958 |
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3959 self.assertEqual('1.2.840.10008.1.2.4.91', m['TransferSyntax']) |
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3960 self.assertEqual('1.2.840.10008.5.1.4.1.1.4', m['SopClassUid']) |
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3961 self.assertEqual('1', m['IndexInSeries']) |
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3962 self.assertTrue('ReceptionDate' in m) |
147 | 3963 |
3964 | |
3965 def test_lua_deadlock(self): | |
3966 # Rana Asim Wajid (2018-07-14): "It does seem that the issue | |
3967 # is with the lua script I'm using for conversion of images to | |
3968 # JPEG2000. When the script is used with 1.4.0 the first | |
3969 # instance appears to be stored and then everything just | |
3970 # halts, ie Orthanc wont respond to anything after that." | |
3971 # https://groups.google.com/d/msg/orthanc-users/Rc-Beb42xc8/JUgdzrmCAgAJ | |
174 | 3972 InstallLuaScriptFromPath(_REMOTE, 'Lua/Jpeg2000Conversion.lua') |
147 | 3973 |
3974 subprocess.check_call([ FindExecutable('storescu'), | |
3975 _REMOTE['Server'], str(_REMOTE['DicomPort']), | |
3976 GetDatabasePath('Brainix/Flair/IM-0001-0001.dcm'), | |
3977 GetDatabasePath('Brainix/Flair/IM-0001-0002.dcm'), | |
3978 ]) | |
3979 | |
3980 instances = DoGet(_REMOTE, '/instances') | |
3981 self.assertEqual(2, len(instances)) | |
3982 | |
3983 t1 = DoGet(_REMOTE, '/instances/%s/metadata/TransferSyntax' % instances[0]) | |
3984 t2 = DoGet(_REMOTE, '/instances/%s/metadata/TransferSyntax' % instances[1]) | |
175 | 3985 self.assertEqual('1.2.840.10008.1.2.4.90', t1) # this will fail if libgdcm-tools is not installed |
147 | 3986 self.assertEqual(t1, t2); |
154
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3987 |
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3988 |
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3989 def test_find_group_length(self): |
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3990 # Orthanc <= 1.4.1 fails to answer C-FIND queries that contain |
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3991 # one of the Generic Group Length tags (*, 0x0000) |
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3992 a = UploadInstance(_REMOTE, 'Brainix/Flair/IM-0001-0001.dcm')['ID'] |
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3993 result = CallFindScu([ '-k', '0008,0052=STUDY', '-k', '0008,0000=80' ]) |
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3994 self.assertFalse('UnableToProcess' in result) |
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3995 self.assertFalse('E:' in result) |
179
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3996 |
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3997 |
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3998 def test_split(self): |
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3999 UploadInstance(_REMOTE, 'Knee/T1/IM-0001-0001.dcm') |
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4000 UploadInstance(_REMOTE, 'Knee/T2/IM-0001-0001.dcm') |
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4001 study = '0a9b3153-2512774b-2d9580de-1fc3dcf6-3bd83918' |
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4002 t1 = '6de73705-c4e65c1b-9d9ea1b5-cabcd8e7-f15e4285' |
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4003 t2 = 'bbf7a453-0d34251a-03663b55-46bb31b9-ffd74c59' |
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4004 |
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4005 self.assertEqual(1, len(DoGet(_REMOTE, '/studies'))) |
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4006 self.assertEqual(2, len(DoGet(_REMOTE, '/series'))) |
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4007 |
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4008 info = DoGet(_REMOTE, '/studies/%s' % study) |
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4009 self.assertTrue('ReferringPhysicianName' in info['MainDicomTags']) |
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4010 |
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4011 job = MonitorJob2(_REMOTE, lambda: DoPost |
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4012 (_REMOTE, '/studies/%s/split' % study, { |
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|
4013 'Series' : [ t2 ], |
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4014 'Replace' : { 'PatientName' : 'Hello' }, |
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4015 'Remove' : [ 'ReferringPhysicianName' ], |
181 | 4016 'KeepSource' : False, |
4017 'Asynchronous' : True | |
179
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4018 })) |
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|
4019 |
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changeset
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4020 self.assertNotEqual(None, job) |
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4021 |
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4022 studies = set(DoGet(_REMOTE, '/studies')) |
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4023 self.assertEqual(2, len(studies)) |
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4024 |
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4025 series = set(DoGet(_REMOTE, '/series')) |
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4026 self.assertEqual(2, len(series)) |
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4027 self.assertTrue(t1 in series) |
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4028 |
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4029 study2 = DoGet(_REMOTE, '/jobs/%s' % job)['Content']['TargetStudy'] |
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4030 self.assertTrue(study in studies) |
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4031 self.assertTrue(study2 in studies) |
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4032 |
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4033 info = DoGet(_REMOTE, '/studies/%s' % study2) |
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4034 self.assertTrue('Hello', info['PatientMainDicomTags']['PatientName']) |
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4035 self.assertFalse('ReferringPhysicianName' in info['MainDicomTags']) |
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4036 |
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|
4037 |
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4038 def test_merge(self): |
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4039 UploadInstance(_REMOTE, 'Knee/T1/IM-0001-0001.dcm') |
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4040 UploadInstance(_REMOTE, 'Brainix/Flair/IM-0001-0001.dcm')['ID'] |
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diff
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|
4041 knee = '0a9b3153-2512774b-2d9580de-1fc3dcf6-3bd83918' |
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diff
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4042 t1 = '6de73705-c4e65c1b-9d9ea1b5-cabcd8e7-f15e4285' |
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diff
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|
4043 brainix = '27f7126f-4f66fb14-03f4081b-f9341db2-53925988' |
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diff
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4044 flair = '1e2c125c-411b8e86-3f4fe68e-a7584dd3-c6da78f0' |
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4045 |
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4046 self.assertEqual(2, len(DoGet(_REMOTE, '/studies'))) |
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4047 self.assertEqual(2, len(DoGet(_REMOTE, '/series'))) |
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4048 |
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4049 job = MonitorJob2(_REMOTE, lambda: DoPost |
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4050 (_REMOTE, '/studies/%s/merge' % knee, { |
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diff
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|
4051 'Resources' : [ brainix ], |
181 | 4052 'KeepSource' : True, |
4053 'Synchronous' : False | |
179
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4054 })) |
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changeset
|
4055 |
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|
4056 self.assertNotEqual(None, job) |
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4057 |
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4058 studies = set(DoGet(_REMOTE, '/studies')) |
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4059 self.assertEqual(2, len(studies)) |
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4060 self.assertTrue(knee in studies) |
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4061 self.assertTrue(brainix in studies) |
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4062 |
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4063 series = set(DoGet(_REMOTE, '/studies/%s' % knee)['Series']) |
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4064 self.assertTrue(t1 in series) |
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4065 series.remove(t1) |
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4066 self.assertEqual(1, len(series)) |
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4067 |
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4068 instances = DoGet(_REMOTE, '/series/%s' % list(series)[0])['Instances'] |
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4069 self.assertEqual(1, len(instances)) |
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4070 merged = DoGet(_REMOTE, '/instances/%s/tags?simplify' % instances[0]) |
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4071 |
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4072 instances = DoGet(_REMOTE, '/series/%s' % t1)['Instances'] |
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4073 self.assertEqual(1, len(instances)) |
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4074 a = DoGet(_REMOTE, '/instances/%s/tags?simplify' % instances[0]) |
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4075 |
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4076 instances = DoGet(_REMOTE, '/series/%s' % flair)['Instances'] |
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4077 self.assertEqual(1, len(instances)) |
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4078 b = DoGet(_REMOTE, '/instances/%s/tags?simplify' % instances[0]) |
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4079 |
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4080 tags = DoGet(_REMOTE, '/studies/%s' % knee) |
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4081 |
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4082 for key in tags['PatientMainDicomTags']: |
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4083 self.assertEqual(a[key], merged[key]) |
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4084 if (key in b and key != 'PatientSex'): |
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4085 self.assertNotEqual(a[key], b[key]) |
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4086 |
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4087 for key in tags['MainDicomTags']: |
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4088 # Not in the patient/study module |
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4089 if (not key in [ 'InstitutionName', |
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4090 'RequestingPhysician', |
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4091 'RequestedProcedureDescription', ]): |
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4092 self.assertEqual(a[key], merged[key]) |
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4093 if (key in b): |
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4094 self.assertNotEqual(a[key], b[key]) |
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4095 |
187 | 4096 |
4097 def test_async_archive(self): | |
4098 # Testing the asynchronous generation of archives/medias (new | |
4099 # in Orthanc 1.4.3) | |
4100 UploadInstance(_REMOTE, 'Knee/T1/IM-0001-0001.dcm') | |
4101 UploadInstance(_REMOTE, 'Knee/T2/IM-0001-0001.dcm') | |
4102 | |
4103 kneeT1 = '6de73705-c4e65c1b-9d9ea1b5-cabcd8e7-f15e4285' | |
4104 kneeT2 = 'bbf7a453-0d34251a-03663b55-46bb31b9-ffd74c59' | |
4105 | |
4106 job = MonitorJob2(_REMOTE, lambda: DoPost | |
4107 (_REMOTE, '/studies/%s/archive' % kneeT1, { | |
4108 'Synchronous' : False | |
4109 })) | |
4110 | |
4111 z = GetArchive(_REMOTE, '/jobs/%s/archive' % job) | |
4112 self.assertEqual(1, len(z.namelist())) | |
4113 self.assertFalse('DICOMDIR' in z.namelist()) | |
4114 | |
4115 job2 = MonitorJob2(_REMOTE, lambda: DoPost | |
4116 (_REMOTE, '/studies/%s/media' % kneeT1, { | |
4117 'Synchronous' : False | |
4118 })) | |
4119 | |
4120 # The archive from the first job has been replaced by the | |
4121 # archive from second job (as MediaArchiveSize == 1) | |
4122 self.assertRaises(Exception, lambda: GetArchive(_REMOTE, '/jobs/%s/archive' % job)) | |
4123 | |
4124 z = GetArchive(_REMOTE, '/jobs/%s/archive' % job2) | |
4125 self.assertEqual(2, len(z.namelist())) | |
4126 self.assertTrue('DICOMDIR' in z.namelist()) | |
4127 | |
4128 job = MonitorJob2(_REMOTE, lambda: DoPost | |
4129 (_REMOTE, '/tools/create-archive', { | |
4130 'Synchronous' : False, | |
4131 'Resources' : [ kneeT1, kneeT2 ], | |
4132 })) | |
4133 | |
4134 z = GetArchive(_REMOTE, '/jobs/%s/archive' % job) | |
4135 self.assertEqual(2, len(z.namelist())) | |
4136 self.assertFalse('DICOMDIR' in z.namelist()) | |
4137 | |
4138 job = MonitorJob2(_REMOTE, lambda: DoPost | |
4139 (_REMOTE, '/tools/create-media', { | |
4140 'Synchronous' : False, | |
4141 'Resources' : [ kneeT1, kneeT2 ], | |
4142 })) | |
4143 | |
4144 z = GetArchive(_REMOTE, '/jobs/%s/archive' % job) | |
4145 self.assertEqual(3, len(z.namelist())) | |
4146 self.assertTrue('DICOMDIR' in z.namelist()) | |
188
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4147 |
187 | 4148 |
188
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4149 def test_queries_hierarchy(self): |
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4150 UploadInstance(_REMOTE, 'Knee/T1/IM-0001-0001.dcm') |
189
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4151 UploadInstance(_REMOTE, 'Brainix/Flair/IM-0001-0001.dcm') |
188
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4152 |
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4153 tags = { |
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4154 'NumberOfPatientRelatedInstances' : '', |
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4155 'NumberOfPatientRelatedSeries' : '', |
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4156 'NumberOfPatientRelatedStudies' : '', |
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4157 'NumberOfStudyRelatedInstances' : '', |
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4158 'NumberOfStudyRelatedSeries' : '', |
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4159 'NumberOfSeriesRelatedInstances' : '', |
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4160 } |
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4161 |
189
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4162 tags2 = copy.copy(tags) |
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4163 tags2['PatientID'] = '887' # Only consider the "Knee" patient |
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4164 |
188
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4165 patient = DoPost(_REMOTE, '/modalities/self/query', { |
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4166 'Level' : 'Patient', |
189
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4167 'Query' : tags2 |
188
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4168 }) ['ID'] |
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4169 |
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4170 study = DoPost(_REMOTE, '/modalities/self/query', { |
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4171 'Level' : 'Study', |
189
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4172 'Query' : tags2 |
188
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4173 }) ['ID'] |
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4174 |
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4175 series = DoPost(_REMOTE, '/modalities/self/query', { |
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4176 'Level' : 'Series', |
189
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4177 'Query' : tags2 |
188
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4178 }) ['ID'] |
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4179 |
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4180 instance = DoPost(_REMOTE, '/modalities/self/query', { |
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4181 'Level' : 'Instance', |
189
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4182 'Query' : tags2 |
188
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4183 }) ['ID'] |
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4184 |
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4185 p = DoGet(_REMOTE, '/queries/%s/answers?expand&simplify' % patient) |
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4186 self.assertEqual(1, len(p)) |
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4187 self.assertEqual('887', p[0]['PatientID']) |
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4188 self.assertEqual('1', p[0]['NumberOfPatientRelatedInstances']) |
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4189 self.assertEqual('1', p[0]['NumberOfPatientRelatedSeries']) |
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4190 self.assertEqual('1', p[0]['NumberOfPatientRelatedStudies']) |
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4191 self.assertFalse('NumberOfStudyRelatedInstances' in p[0]) |
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4192 self.assertFalse('NumberOfStudyRelatedSeries' in p[0]) |
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4193 self.assertFalse('NumberOfSeriesRelatedInstances' in p[0]) |
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4194 |
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4195 p = DoGet(_REMOTE, '/queries/%s/answers?expand&simplify' % study) |
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4196 self.assertEqual(1, len(p)) |
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4197 self.assertEqual('2.16.840.1.113669.632.20.121711.10000160881', p[0]['StudyInstanceUID']) |
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4198 self.assertEqual('1', p[0]['NumberOfStudyRelatedInstances']) |
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4199 self.assertEqual('1', p[0]['NumberOfStudyRelatedSeries']) |
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4200 self.assertFalse('NumberOfPatientRelatedInstances' in p[0]) |
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4201 self.assertFalse('NumberOfPatientRelatedSeries' in p[0]) |
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4202 self.assertFalse('NumberOfPatientRelatedInstances' in p[0]) |
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4203 self.assertFalse('NumberOfSeriesRelatedInstances' in p[0]) |
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4204 |
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4205 p = DoGet(_REMOTE, '/queries/%s/answers?expand&simplify' % series) |
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4206 self.assertEqual(1, len(p)) |
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4207 self.assertEqual('1.3.46.670589.11.17521.5.0.3124.2008081908564160709', p[0]['SeriesInstanceUID']) |
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changeset
|
4208 self.assertEqual('1', p[0]['NumberOfSeriesRelatedInstances']) |
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diff
changeset
|
4209 self.assertFalse('NumberOfPatientRelatedInstances' in p[0]) |
7d585263808b
new test: test_queries_hierarchy
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diff
changeset
|
4210 self.assertFalse('NumberOfPatientRelatedSeries' in p[0]) |
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new test: test_queries_hierarchy
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diff
changeset
|
4211 self.assertFalse('NumberOfPatientRelatedInstances' in p[0]) |
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new test: test_queries_hierarchy
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diff
changeset
|
4212 self.assertFalse('NumberOfStudyRelatedInstances' in p[0]) |
7d585263808b
new test: test_queries_hierarchy
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diff
changeset
|
4213 self.assertFalse('NumberOfStudyRelatedSeries' in p[0]) |
7d585263808b
new test: test_queries_hierarchy
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diff
changeset
|
4214 |
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new test: test_queries_hierarchy
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diff
changeset
|
4215 p = DoGet(_REMOTE, '/queries/%s/answers?expand&simplify' % instance) |
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new test: test_queries_hierarchy
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diff
changeset
|
4216 self.assertEqual(1, len(p)) |
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diff
changeset
|
4217 self.assertEqual('1.3.46.670589.11.17521.5.0.3124.2008081908590448738', p[0]['SOPInstanceUID']) |
7d585263808b
new test: test_queries_hierarchy
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diff
changeset
|
4218 |
7d585263808b
new test: test_queries_hierarchy
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diff
changeset
|
4219 j = DoPost(_REMOTE, '/queries/%s/answers/0/query-studies' % patient, |
7d585263808b
new test: test_queries_hierarchy
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diff
changeset
|
4220 { 'Query' : tags }) ['ID'] |
7d585263808b
new test: test_queries_hierarchy
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diff
changeset
|
4221 self.assertEqual(DoGet(_REMOTE, '/queries/%s/answers?expand&simplify' % j), |
7d585263808b
new test: test_queries_hierarchy
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diff
changeset
|
4222 DoGet(_REMOTE, '/queries/%s/answers?expand&simplify' % study)) |
189
11719f19bd62
test_dicom_disk_size
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
188
diff
changeset
|
4223 |
188
7d585263808b
new test: test_queries_hierarchy
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187
diff
changeset
|
4224 j = DoPost(_REMOTE, '/queries/%s/answers/0/query-series' % patient, |
7d585263808b
new test: test_queries_hierarchy
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diff
changeset
|
4225 { 'Query' : tags }) ['ID'] |
7d585263808b
new test: test_queries_hierarchy
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parents:
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diff
changeset
|
4226 self.assertEqual(DoGet(_REMOTE, '/queries/%s/answers?expand&simplify' % j), |
7d585263808b
new test: test_queries_hierarchy
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diff
changeset
|
4227 DoGet(_REMOTE, '/queries/%s/answers?expand&simplify' % series)) |
7d585263808b
new test: test_queries_hierarchy
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diff
changeset
|
4228 |
7d585263808b
new test: test_queries_hierarchy
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diff
changeset
|
4229 j = DoPost(_REMOTE, '/queries/%s/answers/0/query-instances' % patient, |
7d585263808b
new test: test_queries_hierarchy
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diff
changeset
|
4230 { 'Query' : tags }) ['ID'] |
7d585263808b
new test: test_queries_hierarchy
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diff
changeset
|
4231 self.assertEqual(DoGet(_REMOTE, '/queries/%s/answers?expand&simplify' % j), |
7d585263808b
new test: test_queries_hierarchy
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diff
changeset
|
4232 DoGet(_REMOTE, '/queries/%s/answers?expand&simplify' % instance)) |
7d585263808b
new test: test_queries_hierarchy
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diff
changeset
|
4233 |
7d585263808b
new test: test_queries_hierarchy
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diff
changeset
|
4234 j = DoPost(_REMOTE, '/queries/%s/answers/0/query-series' % study, |
7d585263808b
new test: test_queries_hierarchy
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parents:
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diff
changeset
|
4235 { 'Query' : tags }) ['ID'] |
7d585263808b
new test: test_queries_hierarchy
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parents:
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diff
changeset
|
4236 self.assertEqual(DoGet(_REMOTE, '/queries/%s/answers?expand&simplify' % j), |
7d585263808b
new test: test_queries_hierarchy
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parents:
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diff
changeset
|
4237 DoGet(_REMOTE, '/queries/%s/answers?expand&simplify' % series)) |
7d585263808b
new test: test_queries_hierarchy
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parents:
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diff
changeset
|
4238 |
7d585263808b
new test: test_queries_hierarchy
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parents:
187
diff
changeset
|
4239 j = DoPost(_REMOTE, '/queries/%s/answers/0/query-instances' % study, |
7d585263808b
new test: test_queries_hierarchy
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parents:
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diff
changeset
|
4240 { 'Query' : tags }) ['ID'] |
7d585263808b
new test: test_queries_hierarchy
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parents:
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diff
changeset
|
4241 self.assertEqual(DoGet(_REMOTE, '/queries/%s/answers?expand&simplify' % j), |
7d585263808b
new test: test_queries_hierarchy
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parents:
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diff
changeset
|
4242 DoGet(_REMOTE, '/queries/%s/answers?expand&simplify' % instance)) |
7d585263808b
new test: test_queries_hierarchy
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parents:
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diff
changeset
|
4243 |
7d585263808b
new test: test_queries_hierarchy
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diff
changeset
|
4244 j = DoPost(_REMOTE, '/queries/%s/answers/0/query-instances' % series, |
7d585263808b
new test: test_queries_hierarchy
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parents:
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diff
changeset
|
4245 { 'Query' : tags }) ['ID'] |
7d585263808b
new test: test_queries_hierarchy
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parents:
187
diff
changeset
|
4246 self.assertEqual(DoGet(_REMOTE, '/queries/%s/answers?expand&simplify' % j), |
7d585263808b
new test: test_queries_hierarchy
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parents:
187
diff
changeset
|
4247 DoGet(_REMOTE, '/queries/%s/answers?expand&simplify' % instance)) |
7d585263808b
new test: test_queries_hierarchy
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parents:
187
diff
changeset
|
4248 |
7d585263808b
new test: test_queries_hierarchy
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diff
changeset
|
4249 |
189
11719f19bd62
test_dicom_disk_size
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
188
diff
changeset
|
4250 def test_dicom_disk_size(self): |
11719f19bd62
test_dicom_disk_size
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
188
diff
changeset
|
4251 dicomSize = 0 |
11719f19bd62
test_dicom_disk_size
Sebastien Jodogne <s.jodogne@gmail.com>
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188
diff
changeset
|
4252 |
11719f19bd62
test_dicom_disk_size
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
188
diff
changeset
|
4253 UploadInstance(_REMOTE, 'Brainix/Flair/IM-0001-0001.dcm') |
11719f19bd62
test_dicom_disk_size
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
188
diff
changeset
|
4254 |
11719f19bd62
test_dicom_disk_size
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
188
diff
changeset
|
4255 for i in range(2): |
11719f19bd62
test_dicom_disk_size
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
188
diff
changeset
|
4256 p = 'Knee/T%d/IM-0001-0001.dcm' % (i + 1) |
11719f19bd62
test_dicom_disk_size
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
188
diff
changeset
|
4257 UploadInstance(_REMOTE, p) |
11719f19bd62
test_dicom_disk_size
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
188
diff
changeset
|
4258 dicomSize += os.path.getsize(GetDatabasePath(p)) |
11719f19bd62
test_dicom_disk_size
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
188
diff
changeset
|
4259 |
11719f19bd62
test_dicom_disk_size
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
188
diff
changeset
|
4260 s = DoGet(_REMOTE, '/patients/ca29faea-b6a0e17f-067743a1-8b778011-a48b2a17/statistics') # Consider Knee patient |
11719f19bd62
test_dicom_disk_size
Sebastien Jodogne <s.jodogne@gmail.com>
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188
diff
changeset
|
4261 self.assertEqual(2, s['CountInstances']) |
11719f19bd62
test_dicom_disk_size
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
188
diff
changeset
|
4262 self.assertEqual(2, s['CountSeries']) |
11719f19bd62
test_dicom_disk_size
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
188
diff
changeset
|
4263 self.assertEqual(1, s['CountStudies']) |
11719f19bd62
test_dicom_disk_size
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
188
diff
changeset
|
4264 self.assertEqual(dicomSize, int(s['DicomDiskSize'])) |
11719f19bd62
test_dicom_disk_size
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
188
diff
changeset
|
4265 self.assertEqual(dicomSize, int(s['DicomUncompressedSize'])) |
11719f19bd62
test_dicom_disk_size
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
188
diff
changeset
|
4266 self.assertLess(dicomSize, int(s['UncompressedSize'])) |
11719f19bd62
test_dicom_disk_size
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
188
diff
changeset
|
4267 self.assertEqual(s['UncompressedSize'], s['DiskSize']) |
11719f19bd62
test_dicom_disk_size
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
188
diff
changeset
|
4268 |
202
f26f9ae9c599
test_changes_2 and test_bitbucket_issue_124
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
195
diff
changeset
|
4269 |
f26f9ae9c599
test_changes_2 and test_bitbucket_issue_124
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
195
diff
changeset
|
4270 def test_changes_2(self): |
f26f9ae9c599
test_changes_2 and test_bitbucket_issue_124
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
195
diff
changeset
|
4271 # More consistent behavior since Orthanc 1.5.2 |
f26f9ae9c599
test_changes_2 and test_bitbucket_issue_124
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parents:
195
diff
changeset
|
4272 # https://groups.google.com/d/msg/orthanc-users/QhzB6vxYeZ0/YxabgqpfBAAJ |
f26f9ae9c599
test_changes_2 and test_bitbucket_issue_124
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
195
diff
changeset
|
4273 |
f26f9ae9c599
test_changes_2 and test_bitbucket_issue_124
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
195
diff
changeset
|
4274 # Make sure that this is not the first change |
f26f9ae9c599
test_changes_2 and test_bitbucket_issue_124
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
195
diff
changeset
|
4275 self.assertEqual(0, len(DoGet(_REMOTE, '/instances'))) |
f26f9ae9c599
test_changes_2 and test_bitbucket_issue_124
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
195
diff
changeset
|
4276 a = UploadInstance(_REMOTE, 'DummyCT.dcm')['ID'] |
f26f9ae9c599
test_changes_2 and test_bitbucket_issue_124
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
195
diff
changeset
|
4277 self.assertEqual(1, len(DoGet(_REMOTE, '/instances'))) |
f26f9ae9c599
test_changes_2 and test_bitbucket_issue_124
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
195
diff
changeset
|
4278 DoDelete(_REMOTE, '/instances/%s' % a) |
f26f9ae9c599
test_changes_2 and test_bitbucket_issue_124
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
195
diff
changeset
|
4279 |
f26f9ae9c599
test_changes_2 and test_bitbucket_issue_124
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
195
diff
changeset
|
4280 # No more instance, but there were previous changes |
f26f9ae9c599
test_changes_2 and test_bitbucket_issue_124
Sebastien Jodogne <s.jodogne@gmail.com>
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195
diff
changeset
|
4281 self.assertEqual(0, len(DoGet(_REMOTE, '/instances'))) |
f26f9ae9c599
test_changes_2 and test_bitbucket_issue_124
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
195
diff
changeset
|
4282 |
f26f9ae9c599
test_changes_2 and test_bitbucket_issue_124
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
195
diff
changeset
|
4283 c = DoGet(_REMOTE, '/changes') |
f26f9ae9c599
test_changes_2 and test_bitbucket_issue_124
Sebastien Jodogne <s.jodogne@gmail.com>
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195
diff
changeset
|
4284 self.assertEqual(0, len(c['Changes'])) |
f26f9ae9c599
test_changes_2 and test_bitbucket_issue_124
Sebastien Jodogne <s.jodogne@gmail.com>
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195
diff
changeset
|
4285 self.assertTrue(c['Done']) |
f26f9ae9c599
test_changes_2 and test_bitbucket_issue_124
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
195
diff
changeset
|
4286 seq = c['Last'] |
f26f9ae9c599
test_changes_2 and test_bitbucket_issue_124
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
195
diff
changeset
|
4287 |
f26f9ae9c599
test_changes_2 and test_bitbucket_issue_124
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
195
diff
changeset
|
4288 c = DoGet(_REMOTE, '/changes?last') |
f26f9ae9c599
test_changes_2 and test_bitbucket_issue_124
Sebastien Jodogne <s.jodogne@gmail.com>
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diff
changeset
|
4289 self.assertEqual(0, len(c['Changes'])) |
f26f9ae9c599
test_changes_2 and test_bitbucket_issue_124
Sebastien Jodogne <s.jodogne@gmail.com>
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diff
changeset
|
4290 self.assertTrue(c['Done']) |
f26f9ae9c599
test_changes_2 and test_bitbucket_issue_124
Sebastien Jodogne <s.jodogne@gmail.com>
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195
diff
changeset
|
4291 self.assertEqual(seq, c['Last']) |
f26f9ae9c599
test_changes_2 and test_bitbucket_issue_124
Sebastien Jodogne <s.jodogne@gmail.com>
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195
diff
changeset
|
4292 |
f26f9ae9c599
test_changes_2 and test_bitbucket_issue_124
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
195
diff
changeset
|
4293 c = DoGet(_REMOTE, '/changes?since=%d' % (seq + 1000)) |
f26f9ae9c599
test_changes_2 and test_bitbucket_issue_124
Sebastien Jodogne <s.jodogne@gmail.com>
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diff
changeset
|
4294 self.assertEqual(0, len(c['Changes'])) |
f26f9ae9c599
test_changes_2 and test_bitbucket_issue_124
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diff
changeset
|
4295 self.assertTrue(c['Done']) |
f26f9ae9c599
test_changes_2 and test_bitbucket_issue_124
Sebastien Jodogne <s.jodogne@gmail.com>
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195
diff
changeset
|
4296 self.assertEqual(seq, c['Last']) |
f26f9ae9c599
test_changes_2 and test_bitbucket_issue_124
Sebastien Jodogne <s.jodogne@gmail.com>
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195
diff
changeset
|
4297 |
f26f9ae9c599
test_changes_2 and test_bitbucket_issue_124
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diff
changeset
|
4298 # Add one instance |
f26f9ae9c599
test_changes_2 and test_bitbucket_issue_124
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diff
changeset
|
4299 UploadInstance(_REMOTE, 'DummyCT.dcm') |
f26f9ae9c599
test_changes_2 and test_bitbucket_issue_124
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diff
changeset
|
4300 self.assertEqual(1, len(DoGet(_REMOTE, '/instances'))) |
f26f9ae9c599
test_changes_2 and test_bitbucket_issue_124
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diff
changeset
|
4301 |
f26f9ae9c599
test_changes_2 and test_bitbucket_issue_124
Sebastien Jodogne <s.jodogne@gmail.com>
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195
diff
changeset
|
4302 c = DoGet(_REMOTE, '/changes') |
f26f9ae9c599
test_changes_2 and test_bitbucket_issue_124
Sebastien Jodogne <s.jodogne@gmail.com>
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diff
changeset
|
4303 self.assertEqual(4, len(c['Changes'])) |
f26f9ae9c599
test_changes_2 and test_bitbucket_issue_124
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diff
changeset
|
4304 self.assertTrue(c['Done']) |
f26f9ae9c599
test_changes_2 and test_bitbucket_issue_124
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diff
changeset
|
4305 self.assertEqual(seq + 4, c['Last']) |
f26f9ae9c599
test_changes_2 and test_bitbucket_issue_124
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diff
changeset
|
4306 |
f26f9ae9c599
test_changes_2 and test_bitbucket_issue_124
Sebastien Jodogne <s.jodogne@gmail.com>
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diff
changeset
|
4307 c = DoGet(_REMOTE, '/changes?last') |
f26f9ae9c599
test_changes_2 and test_bitbucket_issue_124
Sebastien Jodogne <s.jodogne@gmail.com>
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diff
changeset
|
4308 self.assertEqual(1, len(c['Changes'])) |
f26f9ae9c599
test_changes_2 and test_bitbucket_issue_124
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|
4309 self.assertTrue(c['Done']) |
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|
4310 self.assertEqual(seq + 4, c['Last']) |
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|
4311 |
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test_changes_2 and test_bitbucket_issue_124
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4312 c = DoGet(_REMOTE, '/changes?since=%d' % (seq + 1000)) |
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4313 self.assertEqual(0, len(c['Changes'])) |
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4314 self.assertTrue(c['Done']) |
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|
4315 self.assertEqual(seq + 4, c['Last']) |
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|
4316 |
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4317 # Remove the uploaded instance |
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4318 DoDelete(_REMOTE, '/instances/%s' % a) |
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4319 self.assertEqual(0, len(DoGet(_REMOTE, '/instances'))) |
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|
4320 |
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changeset
|
4321 c = DoGet(_REMOTE, '/changes') |
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|
4322 self.assertEqual(0, len(c['Changes'])) |
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|
4323 self.assertTrue(c['Done']) |
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|
4324 self.assertEqual(seq + 4, c['Last']) |
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|
4325 |
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test_changes_2 and test_bitbucket_issue_124
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diff
changeset
|
4326 c = DoGet(_REMOTE, '/changes?last') |
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|
4327 self.assertEqual(0, len(c['Changes'])) |
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|
4328 self.assertTrue(c['Done']) |
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changeset
|
4329 self.assertEqual(seq + 4, c['Last']) |
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changeset
|
4330 |
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diff
changeset
|
4331 c = DoGet(_REMOTE, '/changes?since=%d' % (seq + 1000)) |
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changeset
|
4332 self.assertEqual(0, len(c['Changes'])) |
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changeset
|
4333 self.assertTrue(c['Done']) |
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changeset
|
4334 self.assertEqual(seq + 4, c['Last']) |
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|
4335 |
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test_changes_2 and test_bitbucket_issue_124
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changeset
|
4336 |
f26f9ae9c599
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changeset
|
4337 def test_bitbucket_issue_124(self): |
f26f9ae9c599
test_changes_2 and test_bitbucket_issue_124
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4338 a = UploadInstance(_REMOTE, 'Issue124.dcm')['ID'] |
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4339 |
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4340 z = GetArchive(_REMOTE, '/patients/%s/media' % a) |
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4341 self.assertEqual(2, len(z.namelist())) |
207
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|
4342 |
a515eec74078
test_invalid_findscp
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diff
changeset
|
4343 |
a515eec74078
test_invalid_findscp
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diff
changeset
|
4344 def test_invalid_findscp(self): |
a515eec74078
test_invalid_findscp
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4345 UploadInstance(_REMOTE, 'DummyCT.dcm') |
a515eec74078
test_invalid_findscp
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diff
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|
4346 findscu = CallFindScu([ '-S', '-k', '8,52=IMAGE', '-k', '8,16', '-k', '2,2' ]) |
a515eec74078
test_invalid_findscp
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4347 self.assertEqual(0, len(re.findall('\(0002,0002\)', findscu))) |
208
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|
4348 |
2444c9a7c422
test_bitbucket_issue_90
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diff
changeset
|
4349 |
2444c9a7c422
test_bitbucket_issue_90
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diff
changeset
|
4350 def test_bitbucket_issue_90(self): |
2444c9a7c422
test_bitbucket_issue_90
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diff
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|
4351 def CountDicomResults(sex): |
2444c9a7c422
test_bitbucket_issue_90
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|
4352 a = CallFindScu([ '-S', '-k', '8,52=STUDY', '-k', sex ]) |
2444c9a7c422
test_bitbucket_issue_90
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diff
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|
4353 return len(re.findall('\(0010,0040\)', a)) |
2444c9a7c422
test_bitbucket_issue_90
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parents:
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diff
changeset
|
4354 |
2444c9a7c422
test_bitbucket_issue_90
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diff
changeset
|
4355 def CountRestResults(sex): |
2444c9a7c422
test_bitbucket_issue_90
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changeset
|
4356 a = DoPost(_REMOTE, '/tools/find', |
2444c9a7c422
test_bitbucket_issue_90
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diff
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|
4357 { 'Level' : 'Study', 'Query' : { 'PatientSex' : sex } }) |
2444c9a7c422
test_bitbucket_issue_90
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diff
changeset
|
4358 return len(a) |
2444c9a7c422
test_bitbucket_issue_90
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207
diff
changeset
|
4359 |
2444c9a7c422
test_bitbucket_issue_90
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diff
changeset
|
4360 # Just like the "CR000000.dcm" of the issue, the test image |
2444c9a7c422
test_bitbucket_issue_90
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diff
changeset
|
4361 # "DummyCT.dcm" has the tag PatientSex (0010,0040) unset |
2444c9a7c422
test_bitbucket_issue_90
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diff
changeset
|
4362 UploadInstance(_REMOTE, 'DummyCT.dcm') |
2444c9a7c422
test_bitbucket_issue_90
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diff
changeset
|
4363 |
2444c9a7c422
test_bitbucket_issue_90
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diff
changeset
|
4364 # Test that the behavior of DICOM vs. REST API is consistent on missing tags |
2444c9a7c422
test_bitbucket_issue_90
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changeset
|
4365 |
2444c9a7c422
test_bitbucket_issue_90
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diff
changeset
|
4366 # In wildcard constraints, the patient sex must be set for a match to occur |
2444c9a7c422
test_bitbucket_issue_90
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diff
changeset
|
4367 self.assertEqual(0, CountDicomResults('PatientSex=*')) |
2444c9a7c422
test_bitbucket_issue_90
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|
4368 self.assertEqual(0, CountRestResults('*')) |
2444c9a7c422
test_bitbucket_issue_90
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diff
changeset
|
4369 |
2444c9a7c422
test_bitbucket_issue_90
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diff
changeset
|
4370 # In single-valued constraints, the patient sex must be set |
2444c9a7c422
test_bitbucket_issue_90
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207
diff
changeset
|
4371 self.assertEqual(0, CountDicomResults('PatientSex=F')) |
2444c9a7c422
test_bitbucket_issue_90
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diff
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|
4372 self.assertEqual(0, CountDicomResults('PatientSex=M')) |
2444c9a7c422
test_bitbucket_issue_90
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diff
changeset
|
4373 self.assertEqual(0, CountRestResults('F')) |
2444c9a7c422
test_bitbucket_issue_90
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diff
changeset
|
4374 self.assertEqual(0, CountRestResults('M')) |
2444c9a7c422
test_bitbucket_issue_90
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parents:
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diff
changeset
|
4375 |
2444c9a7c422
test_bitbucket_issue_90
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parents:
207
diff
changeset
|
4376 # Empty constraints are only used to ask the actual value of |
2444c9a7c422
test_bitbucket_issue_90
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diff
changeset
|
4377 # the tag to be added to the *answer*. The tag should not used |
2444c9a7c422
test_bitbucket_issue_90
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parents:
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diff
changeset
|
4378 # as a filter in such a situation. |
2444c9a7c422
test_bitbucket_issue_90
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parents:
207
diff
changeset
|
4379 self.assertEqual(1, CountDicomResults('PatientSex')) |
2444c9a7c422
test_bitbucket_issue_90
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207
diff
changeset
|
4380 self.assertEqual(1, CountDicomResults('PatientSex=')) |
2444c9a7c422
test_bitbucket_issue_90
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parents:
207
diff
changeset
|
4381 self.assertEqual(1, CountRestResults('')) # This check fails on Orthanc <= 1.5.2 (issue 90) |
210
2c50c8f340c2
test_rest_modalities_in_study
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diff
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|
4382 |
2c50c8f340c2
test_rest_modalities_in_study
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diff
changeset
|
4383 |
2c50c8f340c2
test_rest_modalities_in_study
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diff
changeset
|
4384 def test_rest_modalities_in_study(self): |
2c50c8f340c2
test_rest_modalities_in_study
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diff
changeset
|
4385 # Tests a regression that is present in Orthanc 1.5.2 and 1.5.3 |
2c50c8f340c2
test_rest_modalities_in_study
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diff
changeset
|
4386 # https://groups.google.com/d/msg/orthanc-users/7lZyG3wpx-M/uOXzAzVCFwAJ |
2c50c8f340c2
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diff
changeset
|
4387 UploadInstance(_REMOTE, 'ColorTestImageJ.dcm') |
2c50c8f340c2
test_rest_modalities_in_study
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|
4388 |
2c50c8f340c2
test_rest_modalities_in_study
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diff
changeset
|
4389 a = DoPost(_REMOTE, '/tools/find', { 'Level' : 'Study', |
2c50c8f340c2
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diff
changeset
|
4390 'Query' : { 'ModalitiesInStudy' : 'US' }}) |
2c50c8f340c2
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diff
changeset
|
4391 self.assertEqual(0, len(a)) |
2c50c8f340c2
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diff
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|
4392 |
2c50c8f340c2
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diff
changeset
|
4393 a = DoPost(_REMOTE, '/tools/find', { 'Level' : 'Study', |
2c50c8f340c2
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diff
changeset
|
4394 'Query' : { 'ModalitiesInStudy' : 'US\\CT' }}) |
2c50c8f340c2
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diff
changeset
|
4395 self.assertEqual(1, len(a)) |
2c50c8f340c2
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|
4396 |
2c50c8f340c2
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208
diff
changeset
|
4397 a = DoPost(_REMOTE, '/tools/find', { 'Level' : 'Study', |
2c50c8f340c2
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diff
changeset
|
4398 'Query' : { 'ModalitiesInStudy' : 'CT' }}) |
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changeset
|
4399 self.assertEqual(1, len(a)) |
211 | 4400 |
4401 | |
4402 def test_series_status(self): | |
4403 def HasCompletedInChanges(): | |
4404 for c in DoGet(_REMOTE, '/changes?limit=1000&since=0')['Changes']: | |
4405 if c['ChangeType'] == 'CompletedSeries': | |
4406 return True; | |
4407 | |
4408 return False | |
4409 | |
4410 UploadInstance(_REMOTE, 'Knix/Loc/IM-0001-0001.dcm') | |
4411 series = '8ea120d7-5057d919-837dfbcc-ccd04e0f-7f3a94aa' | |
4412 self.assertEqual('Unknown', DoGet(_REMOTE, '/series/%s' % series)['Status']) | |
4413 self.assertFalse(HasCompletedInChanges()) | |
4414 | |
4415 series = 'ce25ecb6-ed79d004-5ae43ca7-3fc89bc5-67511614' | |
4416 | |
4417 for i in range(3): | |
4418 UploadInstance(_REMOTE, 'Series/Lena-%d.dcm' % (i + 1)) | |
4419 self.assertEqual('Missing', DoGet(_REMOTE, '/series/%s' % series)['Status']) | |
4420 self.assertFalse(HasCompletedInChanges()) | |
4421 | |
4422 UploadInstance(_REMOTE, 'Series/Lena-4.dcm') | |
4423 self.assertEqual('Complete', DoGet(_REMOTE, '/series/%s' % series)['Status']) | |
4424 self.assertTrue(HasCompletedInChanges()) | |
4425 | |
4426 DoDelete(_REMOTE, '/changes') | |
4427 self.assertFalse(HasCompletedInChanges()) | |
4428 | |
4429 UploadInstance(_REMOTE, 'Series/Lena-5.dcm') | |
4430 self.assertEqual('Inconsistent', DoGet(_REMOTE, '/series/%s' % series)['Status']) | |
4431 self.assertFalse(HasCompletedInChanges()) | |
4432 | |
215 | 4433 |
4434 def test_dicomweb(self): | |
4435 def Compare(dicom, reference): | |
4436 a = UploadInstance(_REMOTE, dicom) ['ID'] | |
4437 b = DoGet(_REMOTE, '/instances/%s/file' % a, | |
4438 headers = { 'Accept' : 'application/dicom+json' }) | |
4439 with open(GetDatabasePath(reference), 'rb') as c: | |
4440 d = json.load(c) | |
4441 self.assertEqual(d, b) | |
4442 | |
4443 Compare('DummyCT.dcm', 'DummyCT.json') | |
4444 Compare('MarekLatin2.dcm', 'MarekLatin2.json') | |
4445 Compare('HierarchicalAnonymization/StructuredReports/IM0', | |
4446 'HierarchicalAnonymization/StructuredReports/IM0.json') | |
217 | 4447 |
4448 | |
4449 def test_issue_95_encodings(self): | |
4450 # https://bitbucket.org/sjodogne/orthanc/issues/95/server-cant-support-chinese | |
4451 # Check out image: "../Database/Encodings/DavidClunie/charsettests.screenshot.png" | |
4452 | |
4453 # Very useful tool: "file2" from package "file-kanji" | |
4454 | |
4455 def GetPatientName(dicom): | |
4456 i = UploadInstance(_REMOTE, dicom) ['ID'] | |
4457 j = DoGet(_REMOTE, '/instances/%s/tags?simplify' % i) | |
4458 return j['PatientName'] | |
4459 | |
4460 def ComparePatientName(name, dicom): | |
4461 self.assertEqual(name, GetPatientName(dicom)) | |
4462 | |
4463 # gdcmraw -t 10,10 -i SCSFREN -o /tmp/tag && uconv -f ISO-IR-100 -t UTF-8 /tmp/tag && echo | |
4464 ComparePatientName(u'Buc^Jérôme', 'Encodings/DavidClunie/SCSFREN') | |
4465 | |
4466 # gdcmraw -t 10,10 -i SCSI2 -o /tmp/tag && uconv -f KOREAN -t UTF-8 /tmp/tag && echo | |
4467 ComparePatientName(u'Hong^Gildong=洪^吉洞=홍^길동', 'Encodings/DavidClunie/SCSI2') # Since Orthanc 1.5.5 | |
4468 | |
4469 # gdcmraw -t 10,10 -i SCSX2 -o /tmp/tag && uconv -f GB18030 -t UTF-8 /tmp/tag && echo | |
4470 ComparePatientName(u'Wang^XiaoDong=王^小东=', 'Encodings/DavidClunie/SCSX2') | |
4471 | |
4472 # gdcmraw -t 10,10 -i SCSX1 -o /tmp/tag && cat /tmp/tag && echo | |
4473 ComparePatientName(u'Wang^XiaoDong=王^小東=', 'Encodings/DavidClunie/SCSX1') | |
4474 | |
4475 # gdcmraw -t 10,10 -i SCSH31 -o /tmp/tag && uconv -f JIS -t UTF-8 /tmp/tag && echo | |
4476 ComparePatientName(u'Yamada^Tarou=山田^太郎=やまだ^たろう', 'Encodings/DavidClunie/SCSH31') | |
4477 | |
4478 # gdcmraw -t 10,10 -i SCSGERM -o /tmp/tag && uconv -f ISO-IR-100 -t UTF-8 /tmp/tag && echo | |
4479 ComparePatientName(u'Äneas^Rüdiger', 'Encodings/DavidClunie/SCSGERM') | |
4480 | |
4481 # gdcmraw -t 10,10 -i SCSGREEK -o /tmp/tag && uconv -f ISO-IR-126 -t UTF-8 /tmp/tag && echo | |
4482 ComparePatientName(u'Διονυσιος', 'Encodings/DavidClunie/SCSGREEK') | |
4483 | |
4484 # gdcmraw -t 10,10 -i SCSRUSS -o /tmp/tag && uconv -f ISO-IR-144 -t UTF-8 /tmp/tag && echo | |
4485 ComparePatientName(u'Люкceмбypг', 'Encodings/DavidClunie/SCSRUSS') | |
4486 | |
4487 # gdcmraw -t 10,10 -i SCSHBRW -o /tmp/tag && uconv -f ISO-IR-138 -t UTF-8 /tmp/tag && echo | |
4488 # NB: Hebrew is a right-to-left encoding, copying/pasting from | |
4489 # Linux console into Emacs automatically reverse the string | |
4490 ComparePatientName(u'שרון^דבורה', 'Encodings/DavidClunie/SCSHBRW') | |
4491 | |
4492 # gdcmraw -t 10,10 -i SCSARAB -o /tmp/tag && uconv -f ISO-IR-127 -t UTF-8 /tmp/tag && echo | |
4493 # NB: Right-to-left as for Hebrew (SCSHBRW), and the Ubuntu console can't display such | |
4494 # characters by default, but copy/paste works with Emacs | |
4495 ComparePatientName(u'قباني^لنزار', 'Encodings/DavidClunie/SCSARAB') | |
4496 | |
4497 # SCSH32: This SpecificCharacterSet is composed of 2 | |
4498 # codepages: "ISO 2022 IR 13" (i.e. "SHIFT_JIS") until the | |
4499 # first equal, then "ISO 2022 IR 87" (i.e. "JIS") for the | |
4500 # remainer. Orthanc only takes into consideration the first | |
4501 # codepage: This is a limitation. | |
4502 # gdcmraw -t 10,10 -i SCSH32 -o /tmp/tag && cut -d '=' -f 1 /tmp/tag | uconv -f SHIFT_JIS -t UTF-8 | |
4503 self.assertTrue(GetPatientName('Encodings/DavidClunie/SCSH32').startswith(u'ヤマダ^タロウ=')) | |
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4504 |
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4505 |
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4506 def test_findscu_missing_tags(self): |
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4507 # dcmodify -e Rows DummyCTInvalidRows.dcm -gst -gse -gin |
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4508 UploadInstance(_REMOTE, 'DummyCT.dcm') |
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4509 UploadInstance(_REMOTE, 'DummyCTInvalidRows.dcm') |
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4510 |
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4511 i = CallFindScu([ '-k', '0008,0052=IMAGES', '-k', 'Rows', '-k', 'PatientName' ]) |
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4512 |
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4513 # We have 2 instances... |
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4514 patientNames = re.findall('\(0010,0010\).*?\[(.*?)\]', i) |
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4515 self.assertEqual(2, len(patientNames)) |
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4516 self.assertEqual('KNIX', patientNames[0]) |
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4517 self.assertEqual('KNIX', patientNames[1]) |
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4518 |
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4519 # ...but only 1 value for the "Rows" tag |
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4520 rows = re.findall('\(0028,0010\) US ([0-9]+)', i) |
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4521 self.assertEqual(1, len(rows)) |
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4522 self.assertEqual('512', rows[0]) |
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4523 |
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4524 |
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4525 |
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4526 def test_bitbucket_issue_131(self): |
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4527 # "Orthanc PACS silently fails to C-MOVE due to duplicate |
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4528 # StudyInstanceUID in it's database." |
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4529 # https://bitbucket.org/sjodogne/orthanc/issues/131/orthanc-pacs-silently-fails-to-c-move-due |
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4530 |
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4531 # Insert 2 instances, with the same StudyInstanceUID, but with |
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4532 # different patient IDs. Orthanc will create 2 distincts |
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4533 # patients, and the hierarchy of resources above the two |
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4534 # instances will be fully disjoint. |
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4535 UploadInstance(_REMOTE, 'PatientIdsCollision/Issue131-a.dcm') |
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4536 UploadInstance(_REMOTE, 'PatientIdsCollision/Issue131-b.dcm') |
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4537 |
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4538 self.assertEqual(2, len(DoGet(_REMOTE, '/patients'))) |
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4539 self.assertEqual(2, len(DoGet(_REMOTE, '/studies'))) |
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4540 |
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4541 a = DoPost(_REMOTE, '/modalities/self/query', { |
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4542 'Level' : 'Study', |
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4543 'Query' : {"PatientID": "A" }})['ID'] |
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4544 |
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4545 # 1 study is matched |
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4546 self.assertEqual(1, len(DoGet(_REMOTE, '/queries/%s/answers' % a))) |
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4547 |
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4548 self.assertEqual(0, len(DoGet(_LOCAL, '/instances'))) |
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4549 self.assertTrue(MonitorJob(_REMOTE, lambda: DoPost |
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4550 (_REMOTE, '/queries/%s/retrieve' % a, |
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4551 '{"TargetAet":"ORTHANCTEST","Synchronous":false}'))) |
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|
4552 |
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4553 # The two studies are matched, as we made the request at the |
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4554 # Study level, thus the shared StudyInstanceUID is used as the key |
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4555 self.assertEqual(2, len(DoGet(_LOCAL, '/instances'))) |
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|
4556 |
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|
4557 |
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4558 # Match the 2 studies |
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4559 a = DoPost(_REMOTE, '/modalities/self/query', { |
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4560 'Level' : 'Study', |
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4561 'Query' : {"StudyInstanceUID": "2.25.123" }})['ID'] |
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4562 self.assertEqual(2, len(DoGet(_REMOTE, '/queries/%s/answers' % a))) |
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4563 DropOrthanc(_LOCAL) |
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4564 self.assertEqual(0, len(DoGet(_LOCAL, '/instances'))) |
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4565 self.assertTrue(MonitorJob(_REMOTE, lambda: DoPost |
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4566 (_REMOTE, '/queries/%s/retrieve' % a, |
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|
4567 '{"TargetAet":"ORTHANCTEST","Synchronous":false}'))) |
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4568 self.assertEqual(2, len(DoGet(_LOCAL, '/instances'))) |
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|
4569 |
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|
4570 |
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4571 # Same test, at the patient level => only 1 instance is transfered |
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4572 a = DoPost(_REMOTE, '/modalities/self/query', { |
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4573 'Level' : 'Patient', |
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4574 'Query' : {"PatientID": "A" }})['ID'] |
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4575 self.assertEqual(1, len(DoGet(_REMOTE, '/queries/%s/answers' % a))) |
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4576 DropOrthanc(_LOCAL) |
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4577 self.assertEqual(0, len(DoGet(_LOCAL, '/instances'))) |
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4578 self.assertTrue(MonitorJob(_REMOTE, lambda: DoPost |
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4579 (_REMOTE, '/queries/%s/retrieve' % a, |
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4580 '{"TargetAet":"ORTHANCTEST","Synchronous":false}'))) |
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4581 self.assertEqual(1, len(DoGet(_LOCAL, '/instances'))) |
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|
4582 |
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|
4583 |
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4584 # Same test, at the series level => only 1 instance is transfered |
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4585 a = DoPost(_REMOTE, '/modalities/self/query', { |
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4586 'Level' : 'Series', |
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4587 'Query' : {"PatientID": "A" }})['ID'] |
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4588 self.assertEqual(1, len(DoGet(_REMOTE, '/queries/%s/answers' % a))) |
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4589 DropOrthanc(_LOCAL) |
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4590 self.assertEqual(0, len(DoGet(_LOCAL, '/instances'))) |
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4591 self.assertTrue(MonitorJob(_REMOTE, lambda: DoPost |
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4592 (_REMOTE, '/queries/%s/retrieve' % a, |
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|
4593 '{"TargetAet":"ORTHANCTEST","Synchronous":false}'))) |
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4594 self.assertEqual(1, len(DoGet(_LOCAL, '/instances'))) |
00e5aeea33dd
test_bitbucket_issue_131
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
218
diff
changeset
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4595 |