Mercurial > hg > orthanc-tests
annotate Tests/Tests.py @ 122:80895f4961d0
compatibility with dcmtk 3.6.2
author | Sebastien Jodogne <s.jodogne@gmail.com> |
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date | Mon, 17 Jul 2017 18:29:20 +0200 |
parents | 1a19f953f53c |
children | ff7438e51f63 |
rev | line source |
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22 | 1 #!/usr/bin/env python |
2 # -*- coding: utf-8 -*- | |
3 | |
4 | |
3 | 5 # Orthanc - A Lightweight, RESTful DICOM Store |
73 | 6 # Copyright (C) 2012-2016 Sebastien Jodogne, Medical Physics |
3 | 7 # Department, University Hospital of Liege, Belgium |
100
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8 # Copyright (C) 2017 Osimis, Belgium |
3 | 9 # |
10 # This program is free software: you can redistribute it and/or | |
11 # modify it under the terms of the GNU General Public License as | |
12 # published by the Free Software Foundation, either version 3 of the | |
13 # License, or (at your option) any later version. | |
14 # | |
15 # This program is distributed in the hope that it will be useful, but | |
16 # WITHOUT ANY WARRANTY; without even the implied warranty of | |
17 # MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU | |
18 # General Public License for more details. | |
19 # | |
20 # You should have received a copy of the GNU General Public License | |
21 # along with this program. If not, see <http://www.gnu.org/licenses/>. | |
22 | |
23 | |
14 | 24 import tempfile |
3 | 25 import unittest |
36 | 26 import base64 |
3 | 27 |
11 | 28 from PIL import ImageChops |
3 | 29 from Toolbox import * |
13 | 30 from xml.dom import minidom |
3 | 31 |
32 _LOCAL = None | |
33 _REMOTE = None | |
34 | |
35 | |
36 def SetOrthancParameters(local, remote): | |
37 global _LOCAL, _REMOTE | |
38 _LOCAL = local | |
39 _REMOTE = remote | |
40 | |
41 | |
14 | 42 def ExtractDicomTags(rawDicom, tags): |
43 with tempfile.NamedTemporaryFile(delete = True) as f: | |
44 f.write(rawDicom) | |
45 f.flush() | |
45 | 46 data = subprocess.check_output([ FindExecutable('dcm2xml'), f.name ]) |
14 | 47 |
48 result = [] | |
49 for tag in tags: | |
50 match = re.search('<element[^>]+name="%s">([^>]*)</element>' % tag, data) | |
51 if match == None: | |
52 result.append('') | |
53 else: | |
54 result.append(match.group(1)) | |
55 | |
56 return result | |
57 | |
58 | |
15 | 59 def InstallLuaScript(path): |
60 with open(GetDatabasePath(path), 'r') as f: | |
61 DoPost(_REMOTE, '/tools/execute-script', f.read(), 'application/lua') | |
62 | |
63 | |
64 def UninstallLuaCallbacks(): | |
65 DoPost(_REMOTE, '/tools/execute-script', 'function OnStoredInstance() end', 'application/lua') | |
43 | 66 InstallLuaScript('Lua/TransferSyntaxEnable.lua') |
15 | 67 |
68 | |
21
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69 def CompareLists(a, b): |
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70 if len(a) != len(b): |
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71 return False |
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72 |
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73 for i in range(len(a)): |
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74 d = a[i] - b[i] |
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75 if abs(d) >= 0.51: # Add some tolerance for rounding errors |
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76 return False |
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77 |
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78 return True |
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79 |
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80 |
80
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81 def CompareTags(a, b, tagsToIgnore): |
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82 for i in tagsToIgnore: |
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83 if i in a: |
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84 del a[i] |
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85 if i in b: |
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86 del b[i] |
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87 |
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88 return a == b |
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89 |
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90 |
71
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91 def CallFindScu(args): |
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92 p = subprocess.Popen([ FindExecutable('findscu'), |
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93 '-P', '-aec', _REMOTE['DicomAet'], '-aet', _LOCAL['DicomAet'], |
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94 _REMOTE['Server'], str(_REMOTE['DicomPort']) ] + args, |
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95 stderr=subprocess.PIPE) |
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96 return p.communicate()[1] |
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97 |
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98 |
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99 def CallMoveScu(args): |
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100 subprocess.check_call([ FindExecutable('movescu'), |
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101 '--move', _LOCAL['DicomAet'], # Target AET (i.e. storescp) |
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102 '--call', _REMOTE['DicomAet'], # Called AET (i.e. Orthanc) |
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103 '--aetitle', _LOCAL['DicomAet'], # Calling AET (i.e. storescp) |
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104 _REMOTE['Server'], str(_REMOTE['DicomPort']) ] + args, |
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105 stderr=subprocess.PIPE) |
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106 |
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107 |
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108 |
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109 def GenerateTestSequence(): |
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110 return [ |
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111 { |
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112 'StudyDescription': 'Hello^', |
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113 'ReferencedStudySequence' : [ |
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114 { |
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115 'StudyDescription': 'Toto', |
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116 }, |
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117 { |
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118 'StudyDescription': 'Tata', |
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119 }, |
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120 ] |
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121 }, |
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122 { |
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123 'StudyDescription': 'Sébastien^', |
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124 'StudyDate' : '19700202', |
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125 } |
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126 ] |
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127 |
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128 |
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129 |
15 | 130 |
3 | 131 class Orthanc(unittest.TestCase): |
132 def setUp(self): | |
83 | 133 if (sys.version_info >= (3, 0)): |
134 # Remove annoying warnings about unclosed socket in Python 3 | |
135 import warnings | |
136 warnings.simplefilter("ignore", ResourceWarning) | |
137 | |
3 | 138 DropOrthanc(_LOCAL) |
139 DropOrthanc(_REMOTE) | |
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140 UninstallLuaCallbacks() |
45 | 141 #print "In test", self._testMethodName |
44
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142 |
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143 def AssertSameImages(self, truth, url): |
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144 im = GetImage(_REMOTE, url) |
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145 self.assertTrue(CompareLists(truth, im.getdata())) |
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146 |
3 | 147 |
148 def test_system(self): | |
149 self.assertTrue('Version' in DoGet(_REMOTE, '/system')) | |
150 self.assertEqual('0', DoGet(_REMOTE, '/statistics')['TotalDiskSize']) | |
151 self.assertEqual('0', DoGet(_REMOTE, '/statistics')['TotalUncompressedSize']) | |
152 | |
153 def test_upload(self): | |
154 u = UploadInstance(_REMOTE, 'DummyCT.dcm') | |
155 self.assertEqual('Success', u['Status']) | |
156 u = UploadInstance(_REMOTE, 'DummyCT.dcm') | |
157 self.assertEqual('AlreadyStored', u['Status']) | |
158 self.assertEqual(1, len(DoGet(_REMOTE, '/patients'))) | |
159 self.assertEqual(1, len(DoGet(_REMOTE, '/studies'))) | |
160 self.assertEqual(1, len(DoGet(_REMOTE, '/series'))) | |
161 self.assertEqual(1, len(DoGet(_REMOTE, '/instances'))) | |
162 | |
163 i = DoGet(_REMOTE, '/instances/%s/simplified-tags' % u['ID']) | |
164 self.assertEqual('20070101', i['StudyDate']) | |
165 | |
166 | |
5 | 167 def test_upload_2(self): |
3 | 168 i = UploadInstance(_REMOTE, 'DummyCT.dcm')['ID'] |
169 instance = DoGet(_REMOTE, '/instances/%s' % i) | |
170 self.assertEqual(i, instance['ID']) | |
171 self.assertEqual('1.2.840.113619.2.176.2025.1499492.7040.1171286242.109', | |
172 instance['MainDicomTags']['SOPInstanceUID']) | |
173 | |
174 series = DoGet(_REMOTE, '/series/%s' % instance['ParentSeries']) | |
175 self.assertEqual('1.2.840.113619.2.176.2025.1499492.7391.1171285944.394', | |
176 series['MainDicomTags']['SeriesInstanceUID']) | |
177 | |
178 study = DoGet(_REMOTE, '/studies/%s' % series['ParentStudy']) | |
179 self.assertEqual('1.2.840.113619.2.176.2025.1499492.7391.1171285944.390', | |
180 study['MainDicomTags']['StudyInstanceUID']) | |
181 | |
182 patient = DoGet(_REMOTE, '/patients/%s' % study['ParentPatient']) | |
183 self.assertEqual('ozp00SjY2xG', | |
184 patient['MainDicomTags']['PatientID']) | |
185 | |
186 dicom = DoGet(_REMOTE, '/instances/%s/file' % instance['ID']) | |
187 self.assertEqual(2472, len(dicom)) | |
188 self.assertEqual('3e29b869978b6db4886355a2b1132124', ComputeMD5(dicom)) | |
189 self.assertEqual(1, len(DoGet(_REMOTE, '/instances/%s/frames' % i))) | |
190 self.assertEqual('TWINOW', DoGet(_REMOTE, '/instances/%s/simplified-tags' % i)['StationName']) | |
191 self.assertEqual('TWINOW', DoGet(_REMOTE, '/instances/%s/tags' % i)['0008,1010']['Value']) | |
192 | |
193 | |
5 | 194 def test_images(self): |
195 i = UploadInstance(_REMOTE, 'Phenix/IM-0001-0001.dcm')['ID'] | |
196 self.assertEqual(1, len(DoGet(_REMOTE, '/instances/%s/frames' % i))) | |
3 | 197 |
5 | 198 im = GetImage(_REMOTE, '/instances/%s/preview' % i) |
199 self.assertEqual("L", im.mode) | |
200 self.assertEqual(512, im.size[0]) | |
201 self.assertEqual(358, im.size[1]) | |
202 | |
203 im = GetImage(_REMOTE, '/instances/%s/image-uint8' % i) | |
204 self.assertEqual("L", im.mode) | |
205 self.assertEqual(512, im.size[0]) | |
206 self.assertEqual(358, im.size[1]) | |
207 | |
208 im = GetImage(_REMOTE, '/instances/%s/image-uint16' % i) | |
209 self.assertEqual(512, im.size[0]) | |
210 self.assertEqual(358, im.size[1]) | |
211 | |
212 im = GetImage(_REMOTE, '/instances/%s/frames/0/preview' % i) | |
213 self.assertEqual("L", im.mode) | |
214 self.assertEqual(512, im.size[0]) | |
215 self.assertEqual(358, im.size[1]) | |
216 | |
217 im = GetImage(_REMOTE, '/instances/%s/frames/0/image-uint8' % i) | |
218 self.assertEqual("L", im.mode) | |
219 self.assertEqual(512, im.size[0]) | |
220 self.assertEqual(358, im.size[1]) | |
221 | |
222 im = GetImage(_REMOTE, '/instances/%s/frames/0/image-uint16' % i) | |
223 self.assertEqual(512, im.size[0]) | |
224 self.assertEqual(358, im.size[1]) | |
64 | 225 |
226 # This is Little Endian Explicit | |
227 self.assertEqual('1.2.840.10008.1.2.1', DoGet(_REMOTE, '/instances/%s/header?simplify' % i)['TransferSyntaxUID']) | |
228 | |
6 | 229 |
230 def test_hierarchy(self): | |
231 UploadFolder(_REMOTE, 'Brainix/Epi') | |
232 UploadFolder(_REMOTE, 'Brainix/Flair') | |
233 UploadFolder(_REMOTE, 'Knee/T1') | |
234 UploadFolder(_REMOTE, 'Knee/T2') | |
235 | |
236 p = DoGet(_REMOTE, '/patients') | |
237 s = DoGet(_REMOTE, '/studies') | |
238 t = DoGet(_REMOTE, '/series') | |
239 self.assertEqual(2, len(p)) | |
240 self.assertEqual(2, len(s)) | |
241 self.assertEqual(4, len(t)) | |
242 self.assertEqual(94, len(DoGet(_REMOTE, '/instances'))) | |
243 | |
244 brainixPatient = '16738bc3-e47ed42a-43ce044c-a3414a45-cb069bd0' | |
245 brainixStudy = '27f7126f-4f66fb14-03f4081b-f9341db2-53925988' | |
246 brainixEpi = '2ac1316d-3e432022-62eabff2-c59f5475-9b1ac3f8' | |
247 brainixFlair = '1e2c125c-411b8e86-3f4fe68e-a7584dd3-c6da78f0' | |
248 | |
249 kneePatient = 'ca29faea-b6a0e17f-067743a1-8b778011-a48b2a17' | |
250 kneeStudy = '0a9b3153-2512774b-2d9580de-1fc3dcf6-3bd83918' | |
251 kneeT1 = '6de73705-c4e65c1b-9d9ea1b5-cabcd8e7-f15e4285' | |
252 kneeT2 = 'bbf7a453-0d34251a-03663b55-46bb31b9-ffd74c59' | |
253 | |
254 self.assertTrue(brainixPatient in p) | |
255 self.assertTrue(kneePatient in p) | |
256 self.assertTrue(brainixStudy in s) | |
257 self.assertTrue(kneeStudy in s) | |
258 self.assertTrue(brainixEpi in t) | |
259 self.assertTrue(brainixFlair in t) | |
260 self.assertTrue(kneeT1 in t) | |
261 self.assertTrue(kneeT2 in t) | |
262 | |
263 self.assertEqual(44, len(DoGet(_REMOTE, '/patients/%s/instances' % brainixPatient))) | |
264 self.assertEqual(2, len(DoGet(_REMOTE, '/patients/%s/series' % brainixPatient))) | |
265 self.assertEqual(1, len(DoGet(_REMOTE, '/patients/%s/studies' % brainixPatient))) | |
266 | |
267 self.assertEqual(50, len(DoGet(_REMOTE, '/patients/%s/instances' % kneePatient))) | |
268 self.assertEqual(2, len(DoGet(_REMOTE, '/patients/%s/series' % kneePatient))) | |
269 self.assertEqual(1, len(DoGet(_REMOTE, '/patients/%s/studies' % kneePatient))) | |
270 | |
271 self.assertEqual(2, len(DoGet(_REMOTE, '/studies/%s/series' % brainixStudy))) | |
272 self.assertEqual(44, len(DoGet(_REMOTE, '/studies/%s/instances' % brainixStudy))) | |
273 | |
274 self.assertEqual(2, len(DoGet(_REMOTE, '/studies/%s/series' % kneeStudy))) | |
275 self.assertEqual(50, len(DoGet(_REMOTE, '/studies/%s/instances' % kneeStudy))) | |
276 | |
277 self.assertEqual(22, len(DoGet(_REMOTE, '/series/%s/instances' % brainixEpi))) | |
278 self.assertEqual(22, len(DoGet(_REMOTE, '/series/%s/instances' % brainixFlair))) | |
279 self.assertEqual(24, len(DoGet(_REMOTE, '/series/%s/instances' % kneeT1))) | |
280 self.assertEqual(26, len(DoGet(_REMOTE, '/series/%s/instances' % kneeT2))) | |
281 | |
282 for patient in p: | |
283 for study in DoGet(_REMOTE, '/patients/%s/studies' % patient): | |
284 self.assertEqual(patient, study['ParentPatient']) | |
285 for series in DoGet(_REMOTE, '/studies/%s/series' % study['ID']): | |
286 self.assertEqual(study['ID'], series['ParentStudy']) | |
287 for instance in DoGet(_REMOTE, '/series/%s/instances' % series['ID']): | |
288 self.assertEqual(series['ID'], instance['ParentSeries']) | |
289 | |
290 self.assertEqual(json.dumps(DoGet(_REMOTE, '/instances/%s/attachments/dicom-as-json/data' % instance['ID'])), | |
291 json.dumps(DoGet(_REMOTE, '/instances/%s/tags' % instance['ID']))) | |
292 | |
293 | |
294 r = DoDelete(_REMOTE, "/studies/%s" % brainixStudy)['RemainingAncestor'] | |
295 self.assertEqual(1, len(DoGet(_REMOTE, '/patients'))) | |
296 self.assertEqual(1, len(DoGet(_REMOTE, '/studies'))) | |
297 self.assertEqual(2, len(DoGet(_REMOTE, '/series'))) | |
298 self.assertEqual(50, len(DoGet(_REMOTE, '/instances'))) | |
299 self.assertEqual(None, r) | |
300 | |
301 r = DoDelete(_REMOTE, "/series/%s" % kneeT2)['RemainingAncestor'] | |
302 self.assertEqual(1, len(DoGet(_REMOTE, '/patients'))) | |
303 self.assertEqual(1, len(DoGet(_REMOTE, '/studies'))) | |
304 self.assertEqual(1, len(DoGet(_REMOTE, '/series'))) | |
305 self.assertEqual(24, len(DoGet(_REMOTE, '/instances'))) | |
306 self.assertEqual('Study', r['Type']) | |
307 self.assertEqual(kneeStudy, r['ID']) | |
308 | |
309 r = DoDelete(_REMOTE, "/instances/%s" % DoGet(_REMOTE, '/instances')[0])['RemainingAncestor'] | |
310 self.assertEqual(1, len(DoGet(_REMOTE, '/patients'))) | |
311 self.assertEqual(1, len(DoGet(_REMOTE, '/studies'))) | |
312 self.assertEqual(1, len(DoGet(_REMOTE, '/series'))) | |
313 self.assertEqual(23, len(DoGet(_REMOTE, '/instances'))) | |
314 self.assertEqual('Series', r['Type']) | |
315 self.assertEqual(kneeT1, r['ID']) | |
316 | |
317 r = DoDelete(_REMOTE, "/patients/%s" % kneePatient)['RemainingAncestor'] | |
318 self.assertEqual(0, len(DoGet(_REMOTE, '/patients'))) | |
319 self.assertEqual(0, len(DoGet(_REMOTE, '/studies'))) | |
320 self.assertEqual(0, len(DoGet(_REMOTE, '/series'))) | |
321 self.assertEqual(0, len(DoGet(_REMOTE, '/instances'))) | |
322 self.assertEqual(None, r) | |
323 | |
324 DropOrthanc(_REMOTE) | |
325 self.assertEqual('0', DoGet(_REMOTE, '/statistics')['TotalDiskSize']) | |
326 self.assertEqual('0', DoGet(_REMOTE, '/statistics')['TotalUncompressedSize']) | |
7 | 327 |
328 | |
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329 def test_multiframe(self): |
7 | 330 i = UploadInstance(_REMOTE, 'Multiframe.dcm')['ID'] |
331 self.assertEqual(76, len(DoGet(_REMOTE, '/instances/%s/frames' % i))) | |
332 | |
333 im = GetImage(_REMOTE, '/instances/%s/frames/0/preview' % i) | |
334 self.assertEqual("L", im.mode) | |
335 self.assertEqual(512, im.size[0]) | |
336 self.assertEqual(512, im.size[1]) | |
337 | |
338 DoGet(_REMOTE, '/instances/%s/frames/0/image-uint8' % i) | |
339 DoGet(_REMOTE, '/instances/%s/frames/0/image-uint16' % i) | |
340 DoGet(_REMOTE, '/instances/%s/frames/75/preview' % i) | |
341 self.assertRaises(Exception, lambda: DoGet(_REMOTE, '/instances/%s/frames/aaa/preview' % i)) | |
342 self.assertRaises(Exception, lambda: DoGet(_REMOTE, '/instances/%s/frames/76/preview' % i)) | |
343 | |
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344 |
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345 def test_changes(self): |
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346 # Check emptiness |
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347 c = DoGet(_REMOTE, '/changes') |
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348 self.assertEqual(0, len(c['Changes'])) |
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349 self.assertEqual(0, c['Last']) |
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350 self.assertTrue(c['Done']) |
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351 c = DoGet(_REMOTE, '/changes?last') |
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352 self.assertEqual(0, len(c['Changes'])) |
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353 self.assertEqual(0, c['Last']) |
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354 self.assertTrue(c['Done']) |
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355 |
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356 # Add 1 instance |
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357 i = UploadInstance(_REMOTE, 'Brainix/Flair/IM-0001-0001.dcm')['ID'] |
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358 c = DoGet(_REMOTE, '/changes') |
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359 begin = c['Last'] |
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360 self.assertEqual(4, len(c['Changes'])) |
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361 self.assertTrue(c['Done']) |
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362 self.assertEqual(c['Changes'][-1]['Seq'], c['Last']) |
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363 |
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364 c = DoGet(_REMOTE, '/changes?last') |
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365 self.assertEqual(1, len(c['Changes'])) |
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366 self.assertEqual(begin, c['Last']) |
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367 self.assertTrue(c['Done']) |
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368 c = DoGet(_REMOTE, '/changes?limit=1&since=' + str(begin - 1)) |
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369 self.assertEqual(1, len(c['Changes'])) |
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370 self.assertEqual(begin, c['Last']) |
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371 self.assertTrue(c['Done']) |
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372 c = DoGet(_REMOTE, '/changes?limit=1&since=' + str(begin - 2)) |
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373 self.assertEqual(1, len(c['Changes'])) |
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374 self.assertEqual(begin - 1, c['Last']) |
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375 self.assertFalse(c['Done']) |
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376 c = DoGet(_REMOTE, '/changes?limit=1&since=' + str(begin - 3)) |
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377 self.assertEqual(1, len(c['Changes'])) |
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378 self.assertEqual(begin - 2, c['Last']) |
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379 self.assertFalse(c['Done']) |
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380 |
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381 UploadFolder(_REMOTE, 'Knee/T1') |
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382 UploadFolder(_REMOTE, 'Knee/T2') |
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383 since = begin |
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384 countPatients = 0 |
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385 countStudies = 0 |
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386 countSeries = 0 |
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387 countInstances = 0 |
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388 completed = 0 |
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389 while True: |
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390 c = DoGet(_REMOTE, '/changes', { 'since' : since, 'limit' : 3 }) |
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391 since = c['Last'] |
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392 for i in c['Changes']: |
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393 if i['ResourceType'] == 'Instance': |
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394 countInstances += 1 |
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395 if i['ResourceType'] == 'Patient': |
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396 countPatients += 1 |
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397 if i['ResourceType'] == 'Study': |
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398 countStudies += 1 |
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399 if i['ResourceType'] == 'Series': |
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400 countSeries += 1 |
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401 if i['ChangeType'] == 'NewInstance': |
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402 countInstances += 1 |
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403 if i['ChangeType'] == 'NewPatient': |
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404 countPatients += 1 |
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405 if i['ChangeType'] == 'NewStudy': |
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406 countStudies += 1 |
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407 if i['ChangeType'] == 'NewSeries': |
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408 countSeries += 1 |
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409 if i['ChangeType'] == 'CompletedSeries': |
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410 completed += 1 |
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411 self.assertTrue('ID' in i) |
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412 self.assertTrue('Path' in i) |
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413 self.assertTrue('Seq' in i) |
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414 if c['Done']: |
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415 break |
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416 |
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417 self.assertEqual(2 * 50, countInstances) |
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418 self.assertEqual(2 * 1, countPatients) |
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419 self.assertEqual(2 * 1, countStudies) |
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420 self.assertEqual(2 * 2, countSeries) |
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421 self.assertEqual(0, completed) |
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422 |
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423 |
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424 def test_archive(self): |
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425 UploadInstance(_REMOTE, 'Knee/T1/IM-0001-0001.dcm') |
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426 UploadInstance(_REMOTE, 'Knee/T2/IM-0001-0001.dcm') |
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427 |
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428 z = GetArchive(_REMOTE, '/patients/%s/archive' % DoGet(_REMOTE, '/patients')[0]) |
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429 self.assertEqual(2, len(z.namelist())) |
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430 |
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431 z = GetArchive(_REMOTE, '/studies/%s/archive' % DoGet(_REMOTE, '/studies')[0]) |
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432 self.assertEqual(2, len(z.namelist())) |
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433 |
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434 z = GetArchive(_REMOTE, '/series/%s/archive' % DoGet(_REMOTE, '/series')[0]) |
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435 self.assertEqual(1, len(z.namelist())) |
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436 |
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437 UploadInstance(_REMOTE, 'Brainix/Flair/IM-0001-0001.dcm') |
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438 |
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439 z = GetArchive(_REMOTE, '/patients/%s/archive' % DoGet(_REMOTE, '/patients')[0]) |
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440 self.assertEqual(2, len(z.namelist())) |
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441 |
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442 |
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443 def test_media_archive(self): |
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444 UploadInstance(_REMOTE, 'Knee/T1/IM-0001-0001.dcm') |
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445 UploadInstance(_REMOTE, 'Knee/T2/IM-0001-0001.dcm') |
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446 |
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447 z = GetArchive(_REMOTE, '/patients/%s/media' % DoGet(_REMOTE, '/patients')[0]) |
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448 self.assertEqual(3, len(z.namelist())) |
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449 self.assertTrue('IMAGES/IM0' in z.namelist()) |
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450 self.assertTrue('IMAGES/IM1' in z.namelist()) |
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451 self.assertTrue('DICOMDIR' in z.namelist()) |
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452 |
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453 try: |
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454 os.remove('/tmp/DICOMDIR') |
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455 except: |
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456 # The file does not exist |
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457 pass |
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458 |
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459 z.extract('DICOMDIR', '/tmp') |
45 | 460 a = subprocess.check_output([ FindExecutable('dciodvfy'), '/tmp/DICOMDIR' ], |
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461 stderr = subprocess.STDOUT).split('\n') |
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462 self.assertEqual(3, len(a)) |
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463 self.assertTrue(a[0].startswith('Warning')) |
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464 self.assertEqual('BasicDirectory', a[1]) |
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465 self.assertEqual('', a[2]) |
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466 |
45 | 467 a = subprocess.check_output([ FindExecutable('dcentvfy'), '/tmp/DICOMDIR' ], |
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468 stderr = subprocess.STDOUT).split('\n') |
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469 self.assertEqual(1, len(a)) |
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470 self.assertEqual('', a[0]) |
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471 |
45 | 472 a = subprocess.check_output([ FindExecutable('dcm2xml'), '/tmp/DICOMDIR' ]) |
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473 self.assertTrue(re.search('1.3.46.670589.11.17521.5.0.3124.2008081908590448738', a) != None) |
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474 self.assertTrue(re.search('1.3.46.670589.11.17521.5.0.3124.2008081909113806560', a) != None) |
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475 |
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476 os.remove('/tmp/DICOMDIR') |
10 | 477 |
478 | |
479 def test_protection(self): | |
480 UploadInstance(_REMOTE, 'Knee/T1/IM-0001-0001.dcm') | |
481 UploadInstance(_REMOTE, 'Brainix/Flair/IM-0001-0001.dcm') | |
482 self.assertEqual(2, len(DoGet(_REMOTE, '/patients'))) | |
483 a = DoGet(_REMOTE, '/patients')[0] | |
484 b = DoGet(_REMOTE, '/patients')[1] | |
485 self.assertEqual(0, DoGet(_REMOTE, '/patients/%s/protected' % a)) | |
486 DoPut(_REMOTE, '/patients/%s/protected' % a, '0', 'text/plain') | |
487 self.assertEqual(0, DoGet(_REMOTE, '/patients/%s/protected' % a)) | |
488 DoPut(_REMOTE, '/patients/%s/protected' % a, '1', 'text/plain') | |
489 self.assertEqual(1, DoGet(_REMOTE, '/patients/%s/protected' % a)) | |
490 DoPut(_REMOTE, '/patients/%s/protected' % a, '0', 'text/plain') | |
491 self.assertEqual(0, DoGet(_REMOTE, '/patients/%s/protected' % a)) | |
492 | |
493 | |
12 | 494 def test_raw_tags(self): |
10 | 495 i = UploadInstance(_REMOTE, 'PrivateTags.dcm')['ID'] |
496 | |
497 dicom = DoGet(_REMOTE, '/instances/%s/file' % i) | |
498 self.assertEqual('1a7c56cb02d6e742cc9c856a8ac182e3', ComputeMD5(dicom)) | |
499 | |
500 s = '/instances/%s/content/' % i | |
501 | |
502 self.assertEqual('LOGIQBOOK', DoGet(_REMOTE, s + '0008-1010').strip()) | |
503 self.assertRaises(Exception, lambda: DoGet(_REMOTE, s + '0008-1011')) | |
504 | |
505 self.assertEqual('Abdomen', DoGet(_REMOTE, s + '7fe1-1001/0/7fe1-1008/0/7fe1-1057').strip()) | |
506 self.assertEqual('cla_3c', DoGet(_REMOTE, s + '7fe1-1001/0/7fe1-1008/8/7fe1-1057').strip()) | |
507 | |
508 UploadInstance(_REMOTE, 'Brainix/Epi/IM-0001-0001.dcm') | |
509 UploadInstance(_REMOTE, 'Brainix/Flair/IM-0001-0001.dcm') | |
510 UploadInstance(_REMOTE, 'Knee/T1/IM-0001-0001.dcm') | |
511 UploadInstance(_REMOTE, 'Knee/T2/IM-0001-0001.dcm') | |
512 | |
513 for i in DoGet(_REMOTE, '/instances'): | |
514 aid = DoGet(_REMOTE, '/instances/%s' % i)['MainDicomTags']['SOPInstanceUID'] | |
515 self.assertEqual(aid, DoGet(_REMOTE, '/instances/%s/content/0008-0018' % i).replace(chr(0), '')) | |
516 | |
517 | |
518 def test_raw_tags_mdn(self): | |
519 # Bug reported by Cyril Paulus | |
520 i = UploadInstance(_REMOTE, 'PrivateMDNTags.dcm')['ID'] | |
521 self.assertAlmostEqual(0.000027, DoGet(_REMOTE, '/instances/%s/content/7053-1000' % i)) | |
522 | |
523 | |
524 def test_modify_instance(self): | |
525 i = UploadInstance(_REMOTE, 'PrivateTags.dcm')['ID'] | |
526 modified = DoPost(_REMOTE, '/instances/%s/modify' % i, | |
527 json.dumps({ | |
528 "Replace" : { | |
529 "PatientName" : "hello", | |
530 #"PatientID" : "world" | |
531 }, | |
532 "Remove" : [ "StationName" ], | |
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533 "RemovePrivateTags" : True |
10 | 534 }), |
535 'application/json') | |
536 j = DoPost(_REMOTE, '/instances', modified, 'application/dicom')['ID'] | |
537 | |
538 self.assertNotEqual('hello', DoGet(_REMOTE, '/instances/%s/content/0010-0010' % i).strip()) | |
539 #self.assertNotEqual('world', DoGet(_REMOTE, '/instances/%s/content/0010-0020' % i).strip()) | |
83 | 540 self.assertEqual('LOGIQBOOK', DoGet(_REMOTE, '/instances/%s/content/0008-1010' % i).strip()) |
10 | 541 DoGet(_REMOTE, '/instances/%s/content/6003-1010' % i) # Some private tag |
542 | |
543 self.assertEqual('hello', DoGet(_REMOTE, '/instances/%s/content/0010-0010' % j).strip()) | |
544 #self.assertEqual('world', DoGet(_REMOTE, '/instances/%s/content/0010-0020' % j).strip()) | |
545 self.assertRaises(Exception, lambda: DoGet(_REMOTE, '/instances/%s/content/0008-1010' % j)) | |
546 self.assertRaises(Exception, lambda: DoGet(_REMOTE, '/instances/%s/content/6003-1010' % j)) | |
547 | |
548 | |
549 def test_modify_series(self): | |
550 # Upload 4 images from the same series | |
551 for i in range(4): | |
552 UploadInstance(_REMOTE, 'Brainix/Epi/IM-0001-000%d.dcm' % (i + 1)) | |
553 | |
554 origSeries = DoGet(_REMOTE, '/series')[0] | |
555 newSeries = DoPost(_REMOTE, '/series/%s/modify' % origSeries, | |
556 '{"Replace":{"PatientName":"Jodogne"}}', | |
557 'application/json')['ID'] | |
558 | |
559 self.assertEqual(origSeries, DoGet(_REMOTE, '/series/%s' % newSeries)['ModifiedFrom']) | |
560 instances = DoGet(_REMOTE, '/series/%s' % newSeries)['Instances'] | |
561 self.assertEqual(4, len(instances)) | |
562 for i in instances: | |
563 j = DoGet(_REMOTE, '/instances/%s' % i)['ModifiedFrom'] | |
564 self.assertEqual(newSeries, DoGet(_REMOTE, '/instances/%s' % i)['ParentSeries']) | |
565 self.assertEqual(origSeries, DoGet(_REMOTE, '/instances/%s' % j)['ParentSeries']) | |
566 | |
567 self.assertEqual('Jodogne', DoGet(_REMOTE, '/instances/%s/content/0010-0010' % i).strip()) | |
568 self.assertNotEqual('Jodogne', DoGet(_REMOTE, '/instances/%s/content/0010-0010' % j).strip()) | |
569 | |
570 | |
571 def test_modify_study(self): | |
572 # Upload 4 images from the 2 series of the same study | |
573 for i in range(4): | |
574 UploadInstance(_REMOTE, 'Brainix/Flair/IM-0001-000%d.dcm' % (i + 1)) | |
575 UploadInstance(_REMOTE, 'Brainix/Epi/IM-0001-000%d.dcm' % (i + 1)) | |
576 | |
577 origStudy = DoGet(_REMOTE, '/studies')[0] | |
578 newStudy = DoPost(_REMOTE, '/studies/%s/modify' % origStudy, | |
579 '{"Replace":{"PatientName":"Jodogne"}}', | |
580 'application/json')['ID'] | |
581 | |
582 self.assertEqual(origStudy, DoGet(_REMOTE, '/studies/%s' % newStudy)['ModifiedFrom']) | |
583 series = DoGet(_REMOTE, '/studies/%s' % newStudy)['Series'] | |
584 self.assertEqual(2, len(series)) | |
585 for s in series: | |
586 ss = DoGet(_REMOTE, '/series/%s' % s)['ModifiedFrom'] | |
587 self.assertEqual(newStudy, DoGet(_REMOTE, '/series/%s' % s)['ParentStudy']) | |
588 self.assertEqual(origStudy, DoGet(_REMOTE, '/series/%s' % ss)['ParentStudy']) | |
589 | |
590 instances = DoGet(_REMOTE, '/series/%s' % s)['Instances'] | |
591 for i in instances: | |
592 j = DoGet(_REMOTE, '/instances/%s' % i)['ModifiedFrom'] | |
593 self.assertEqual(s, DoGet(_REMOTE, '/instances/%s' % i)['ParentSeries']) | |
594 self.assertEqual(ss, DoGet(_REMOTE, '/instances/%s' % j)['ParentSeries']) | |
595 | |
596 self.assertEqual('Jodogne', DoGet(_REMOTE, '/instances/%s/content/0010-0010' % i).strip()) | |
597 self.assertNotEqual('Jodogne', DoGet(_REMOTE, '/instances/%s/content/0010-0010' % j).strip()) | |
598 | |
599 | |
600 def test_anonymize_series(self): | |
601 # Upload 4 images from the same series | |
602 for i in range(4): | |
603 UploadInstance(_REMOTE, 'Brainix/Epi/IM-0001-000%d.dcm' % (i + 1)) | |
604 | |
605 origSeries = DoGet(_REMOTE, '/series')[0] | |
606 newSeries = DoPost(_REMOTE, '/series/%s/anonymize' % origSeries, | |
607 '{}', | |
608 'application/json')['ID'] | |
609 | |
610 self.assertEqual(origSeries, DoGet(_REMOTE, '/series/%s' % newSeries)['AnonymizedFrom']) | |
611 instances = DoGet(_REMOTE, '/series/%s' % newSeries)['Instances'] | |
612 self.assertEqual(4, len(instances)) | |
613 for i in instances: | |
614 j = DoGet(_REMOTE, '/instances/%s' % i)['AnonymizedFrom'] | |
615 self.assertEqual(newSeries, DoGet(_REMOTE, '/instances/%s' % i)['ParentSeries']) | |
616 self.assertEqual(origSeries, DoGet(_REMOTE, '/instances/%s' % j)['ParentSeries']) | |
617 | |
618 DoGet(_REMOTE, '/instances/%s/content/0008-1010' % j) | |
619 self.assertRaises(Exception, lambda: DoGet(_REMOTE, '/instances/%s/content/0008-1010' % i)) | |
620 | |
621 | |
622 def test_anonymize_study(self): | |
623 # Upload 4 images from the 2 series of the same study | |
624 for i in range(4): | |
625 UploadInstance(_REMOTE, 'Brainix/Flair/IM-0001-000%d.dcm' % (i + 1)) | |
626 UploadInstance(_REMOTE, 'Brainix/Epi/IM-0001-000%d.dcm' % (i + 1)) | |
627 | |
628 origStudy = DoGet(_REMOTE, '/studies')[0] | |
629 newStudy = DoPost(_REMOTE,'/studies/%s/anonymize' % origStudy, | |
630 '{"Replace":{"PatientName":"Jodogne"}}', | |
631 'application/json')['ID'] | |
632 | |
633 self.assertEqual(origStudy, DoGet(_REMOTE, '/studies/%s' % newStudy)['AnonymizedFrom']) | |
634 series = DoGet(_REMOTE, '/studies/%s' % newStudy)['Series'] | |
635 self.assertEqual(2, len(series)) | |
636 for s in series: | |
637 ss = DoGet(_REMOTE, '/series/%s' % s)['AnonymizedFrom'] | |
638 self.assertEqual(newStudy, DoGet(_REMOTE, '/series/%s' % s)['ParentStudy']) | |
639 self.assertEqual(origStudy, DoGet(_REMOTE, '/series/%s' % ss)['ParentStudy']) | |
640 | |
641 instances = DoGet(_REMOTE, '/series/%s' % s)['Instances'] | |
642 for i in instances: | |
643 j = DoGet(_REMOTE, '/instances/%s' % i)['AnonymizedFrom'] | |
644 self.assertEqual(s, DoGet(_REMOTE, '/instances/%s' % i)['ParentSeries']) | |
645 self.assertEqual(ss, DoGet(_REMOTE, '/instances/%s' % j)['ParentSeries']) | |
646 | |
647 self.assertEqual('Jodogne', DoGet(_REMOTE, '/instances/%s/content/0010-0010' % i).strip()) | |
648 self.assertNotEqual('Jodogne', DoGet(_REMOTE, '/instances/%s/content/0010-0010' % j).strip()) | |
11 | 649 |
650 | |
651 | |
652 def test_storescu(self): | |
653 # Check emptiness | |
654 e = DoGet(_REMOTE, '/exports') | |
655 self.assertEqual(0, len(e['Exports'])) | |
656 self.assertEqual(0, e['Last']) | |
657 self.assertTrue(e['Done']) | |
658 e = DoGet(_REMOTE, '/exports?last') | |
659 self.assertEqual(0, len(e['Exports'])) | |
660 self.assertEqual(0, e['Last']) | |
661 self.assertTrue(e['Done']) | |
662 | |
663 # Add 1 instance | |
664 i = UploadInstance(_REMOTE, 'DummyCT.dcm')['ID'] | |
665 self.assertEqual(0, len(DoGet(_LOCAL, '/patients'))) | |
666 | |
667 # Export the instance | |
668 j = DoPost(_REMOTE, '/modalities/orthanctest/store', str(i), 'text/plain') # instance | |
669 self.assertEqual(1, len(DoGet(_LOCAL, '/patients'))) | |
670 self.assertEqual(1, len(DoGet(_LOCAL, '/studies'))) | |
671 self.assertEqual(1, len(DoGet(_LOCAL, '/series'))) | |
672 self.assertEqual(1, len(DoGet(_LOCAL, '/instances'))) | |
673 | |
674 e = DoGet(_REMOTE, '/exports') | |
675 self.assertEqual(1, len(e['Exports'])) | |
676 self.assertTrue(e['Done']) | |
677 self.assertEqual(e['Exports'][-1]['Seq'], e['Last']) | |
678 e = DoGet(_REMOTE, '/exports?limit=1') | |
679 self.assertEqual(1, len(e['Exports'])) | |
680 self.assertTrue(e['Done']) | |
681 self.assertEqual(e['Exports'][-1]['Seq'], e['Last']) | |
682 e = DoGet(_REMOTE, '/exports?last') | |
683 self.assertEqual(1, len(e['Exports'])) | |
684 self.assertTrue(e['Done']) | |
685 self.assertEqual(e['Exports'][-1]['Seq'], e['Last']) | |
686 seqInstance = e['Last'] | |
687 | |
688 # Export the series | |
689 j = DoPost(_REMOTE, '/modalities/orthanctest/store', 'f2635388-f01d497a-15f7c06b-ad7dba06-c4c599fe', 'text/plain') | |
690 | |
691 e = DoGet(_REMOTE, '/exports') | |
692 self.assertEqual(2, len(e['Exports'])) | |
693 self.assertTrue(e['Done']) | |
694 self.assertEqual(e['Exports'][-1]['Seq'], e['Last']) | |
695 seqSeries = e['Last'] | |
696 self.assertNotEqual(seqInstance, seqSeries) | |
697 e = DoGet(_REMOTE, '/exports?limit=1&since=0') | |
698 self.assertEqual(1, len(e['Exports'])) | |
699 self.assertFalse(e['Done']) | |
700 self.assertEqual(e['Exports'][-1]['Seq'], seqInstance) | |
701 e = DoGet(_REMOTE, '/exports?limit=1&since=' + str(seqInstance)) | |
702 self.assertEqual(1, len(e['Exports'])) | |
703 self.assertTrue(e['Done']) | |
704 self.assertEqual(e['Exports'][-1]['Seq'], seqSeries) | |
705 e = DoGet(_REMOTE, '/exports?last') | |
706 self.assertEqual(1, len(e['Exports'])) | |
707 self.assertTrue(e['Done']) | |
708 self.assertEqual(e['Exports'][-1]['Seq'], seqSeries) | |
709 | |
710 # Export the study | |
711 j = DoPost(_REMOTE, '/modalities/orthanctest/store', 'b9c08539-26f93bde-c81ab0d7-bffaf2cb-a4d0bdd0', 'text/plain') | |
712 seqStudy = DoGet(_REMOTE, '/exports')['Last'] | |
713 | |
714 # Export the patient | |
715 j = DoPost(_REMOTE, '/modalities/orthanctest/store', '6816cb19-844d5aee-85245eba-28e841e6-2414fae2', 'text/plain') | |
716 self.assertEqual(1, len(DoGet(_LOCAL, '/patients'))) | |
717 self.assertEqual(1, len(DoGet(_LOCAL, '/studies'))) | |
718 self.assertEqual(1, len(DoGet(_LOCAL, '/series'))) | |
719 self.assertEqual(1, len(DoGet(_LOCAL, '/instances'))) | |
720 | |
721 e = DoGet(_REMOTE, '/exports') | |
722 self.assertEqual(4, len(e['Exports'])) | |
723 self.assertTrue(e['Done']) | |
724 self.assertEqual(e['Exports'][-1]['Seq'], e['Last']) | |
725 seqPatient = e['Last'] | |
726 self.assertNotEqual(seqInstance, seqSeries) | |
727 self.assertNotEqual(seqSeries, seqStudy) | |
728 self.assertNotEqual(seqStudy, seqPatient) | |
729 self.assertTrue(seqInstance < seqSeries) | |
730 self.assertTrue(seqSeries < seqStudy) | |
731 self.assertTrue(seqStudy < seqPatient) | |
732 e = DoGet(_REMOTE, '/exports?limit=1&since=0') | |
733 self.assertEqual(1, len(e['Exports'])) | |
734 self.assertFalse(e['Done']) | |
735 self.assertEqual(e['Exports'][-1]['Seq'], seqInstance) | |
736 e = DoGet(_REMOTE, '/exports?limit=1&since=' + str(seqInstance)) | |
737 self.assertEqual(1, len(e['Exports'])) | |
738 self.assertFalse(e['Done']) | |
739 self.assertEqual(e['Exports'][-1]['Seq'], seqSeries) | |
740 e = DoGet(_REMOTE, '/exports?limit=1&since=' + str(seqSeries)) | |
741 self.assertEqual(1, len(e['Exports'])) | |
742 self.assertFalse(e['Done']) | |
743 self.assertEqual(e['Exports'][-1]['Seq'], seqStudy) | |
744 e = DoGet(_REMOTE, '/exports?limit=1&since=' + str(seqStudy)) | |
745 self.assertEqual(1, len(e['Exports'])) | |
746 self.assertTrue(e['Done']) | |
747 self.assertEqual(e['Exports'][-1]['Seq'], seqPatient) | |
748 e = DoGet(_REMOTE, '/exports?last') | |
749 self.assertEqual(1, len(e['Exports'])) | |
750 self.assertTrue(e['Done']) | |
751 self.assertEqual(e['Exports'][-1]['Seq'], seqPatient) | |
752 | |
753 | |
754 # Check the content of the logged information | |
755 e = DoGet(_REMOTE, '/exports')['Exports'] | |
756 | |
757 if 'PatientID' in e[0]: | |
758 # Since Orthanc 0.8.6 | |
759 patient = 'PatientID' | |
760 study = 'StudyInstanceUID' | |
761 series = 'SeriesInstanceUID' | |
762 instance = 'SOPInstanceUID' | |
763 else: | |
764 # Up to Orthanc 0.8.5 | |
765 patient = 'PatientId' | |
766 study = 'StudyInstanceUid' | |
767 series = 'SeriesInstanceUid' | |
768 instance = 'SopInstanceUid' | |
769 | |
770 for k in range(4): | |
771 self.assertTrue('Date' in e[k]) | |
772 self.assertTrue('Seq' in e[k]) | |
773 self.assertEqual('orthanctest', e[k]['RemoteModality']) | |
774 | |
775 self.assertEqual(10, len(e[0])) | |
776 self.assertEqual('Instance', e[0]['ResourceType']) | |
777 self.assertEqual('66a662ce-7430e543-bad44d47-0dc5a943-ec7a538d', e[0]['ID']) | |
778 self.assertEqual('/instances/66a662ce-7430e543-bad44d47-0dc5a943-ec7a538d', e[0]['Path']) | |
779 self.assertEqual('1.2.840.113619.2.176.2025.1499492.7040.1171286242.109', e[0][instance]) | |
780 self.assertEqual('1.2.840.113619.2.176.2025.1499492.7391.1171285944.394', e[0][series]) | |
781 self.assertEqual('1.2.840.113619.2.176.2025.1499492.7391.1171285944.390', e[0][study]) | |
782 self.assertEqual('ozp00SjY2xG', e[0][patient]) | |
783 | |
784 self.assertEqual(9, len(e[1])) | |
785 self.assertEqual('Series', e[1]['ResourceType']) | |
786 self.assertEqual('f2635388-f01d497a-15f7c06b-ad7dba06-c4c599fe', e[1]['ID']) | |
787 self.assertEqual('/series/f2635388-f01d497a-15f7c06b-ad7dba06-c4c599fe', e[1]['Path']) | |
788 self.assertEqual('1.2.840.113619.2.176.2025.1499492.7391.1171285944.394', e[1][series]) | |
789 self.assertEqual('1.2.840.113619.2.176.2025.1499492.7391.1171285944.390', e[1][study]) | |
790 self.assertEqual('ozp00SjY2xG', e[1][patient]) | |
791 | |
792 self.assertEqual(8, len(e[2])) | |
793 self.assertEqual('Study', e[2]['ResourceType']) | |
794 self.assertEqual('b9c08539-26f93bde-c81ab0d7-bffaf2cb-a4d0bdd0', e[2]['ID']) | |
795 self.assertEqual('/studies/b9c08539-26f93bde-c81ab0d7-bffaf2cb-a4d0bdd0', e[2]['Path']) | |
796 self.assertEqual('1.2.840.113619.2.176.2025.1499492.7391.1171285944.390', e[2][study]) | |
797 self.assertEqual('ozp00SjY2xG', e[2][patient]) | |
798 | |
799 self.assertEqual(7, len(e[3])) | |
800 self.assertEqual('Patient', e[3]['ResourceType']) | |
801 self.assertEqual('6816cb19-844d5aee-85245eba-28e841e6-2414fae2', e[3]['ID']) | |
802 self.assertEqual('/patients/6816cb19-844d5aee-85245eba-28e841e6-2414fae2', e[3]['Path']) | |
803 self.assertEqual('ozp00SjY2xG', e[3][patient]) | |
804 | |
805 DropOrthanc(_REMOTE) | |
806 self.assertEqual(0, len(DoGet(_REMOTE, '/exports')['Exports'])) | |
807 | |
808 | |
809 def test_store_peer(self): | |
810 self.assertEqual(0, len(DoGet(_LOCAL, '/exports')['Exports'])) | |
811 self.assertEqual(0, len(DoGet(_REMOTE, '/exports')['Exports'])) | |
812 | |
813 i = UploadInstance(_REMOTE, 'DummyCT.dcm')['ID'] | |
814 self.assertEqual(0, len(DoGet(_LOCAL, '/patients'))) | |
815 self.assertEqual(1, len(DoGet(_REMOTE, '/patients'))) | |
816 | |
817 j = DoPost(_REMOTE, '/peers/peer/store', str(i), 'text/plain') | |
818 self.assertEqual(1, len(DoGet(_LOCAL, '/patients'))) | |
819 self.assertEqual(1, len(DoGet(_REMOTE, '/patients'))) | |
820 | |
821 self.assertEqual(1, len(DoGet(_REMOTE, '/exports')['Exports'])) | |
822 | |
823 DropOrthanc(_REMOTE) | |
824 self.assertEqual(0, len(DoGet(_REMOTE, '/exports')['Exports'])) | |
825 | |
826 | |
827 def test_bulk_storescu(self): | |
828 self.assertEqual(0, len(DoGet(_LOCAL, '/patients'))) | |
829 | |
830 a = UploadInstance(_REMOTE, 'Knee/T1/IM-0001-0001.dcm') | |
831 b = UploadInstance(_REMOTE, 'Knee/T2/IM-0001-0001.dcm') | |
832 | |
833 j = DoPost(_REMOTE, '/modalities/orthanctest/store', [ a['ID'], b['ID'] ], 'application/json') | |
834 self.assertEqual(2, len(DoGet(_LOCAL, '/instances'))) | |
835 | |
836 DropOrthanc(_LOCAL) | |
837 | |
838 # Send using patient's UUID | |
839 self.assertEqual(0, len(DoGet(_LOCAL, '/instances'))) | |
840 j = DoPost(_REMOTE, '/modalities/orthanctest/store', | |
841 [ 'ca29faea-b6a0e17f-067743a1-8b778011-a48b2a17' ], 'application/json') | |
842 self.assertEqual(2, len(DoGet(_LOCAL, '/instances'))) | |
843 | |
844 | |
845 def test_color(self): | |
846 i = UploadInstance(_REMOTE, 'ColorTestMalaterre.dcm')['ID'] | |
847 im = GetImage(_REMOTE, '/instances/%s/preview' % i) | |
848 self.assertEqual("RGB", im.mode) | |
849 self.assertEqual(41, im.size[0]) | |
850 self.assertEqual(41, im.size[1]) | |
851 | |
852 # http://effbot.org/zone/pil-comparing-images.htm | |
13 | 853 truth = Image.open(GetDatabasePath('ColorTestMalaterre.png')) |
11 | 854 self.assertTrue(ImageChops.difference(im, truth).getbbox() is None) |
855 | |
856 | |
12 | 857 def test_faking_ruby_put(self): |
858 UploadInstance(_REMOTE, 'Knee/T1/IM-0001-0001.dcm') | |
859 UploadInstance(_REMOTE, 'Brainix/Flair/IM-0001-0001.dcm') | |
860 self.assertEqual(2, len(DoGet(_REMOTE, '/patients'))) | |
861 a = DoGet(_REMOTE, '/patients')[0] | |
862 b = DoGet(_REMOTE, '/patients')[1] | |
863 self.assertEqual(0, DoGet(_REMOTE, '/patients/%s/protected' % a)) | |
864 DoGet(_REMOTE, '/patients/%s/protected' % a, data = { '_method' : 'PUT' }, body = '0') | |
865 self.assertEqual(0, DoGet(_REMOTE, '/patients/%s/protected' % a)) | |
866 DoGet(_REMOTE, '/patients/%s/protected' % a, data = { '_method' : 'PUT' }, body = '1') | |
867 self.assertEqual(1, DoGet(_REMOTE, '/patients/%s/protected' % a)) | |
868 DoGet(_REMOTE, '/patients/%s/protected' % a, data = { '_method' : 'PUT' }, body = '0') | |
869 self.assertEqual(0, DoGet(_REMOTE, '/patients/%s/protected' % a)) | |
870 | |
871 | |
872 def test_faking_ruby_delete(self): | |
873 UploadInstance(_REMOTE, 'Knee/T1/IM-0001-0001.dcm') | |
874 UploadInstance(_REMOTE, 'Brainix/Flair/IM-0001-0001.dcm') | |
875 self.assertEqual(2, len(DoGet(_REMOTE, '/patients'))) | |
876 a = DoGet(_REMOTE, '/patients')[0] | |
877 b = DoGet(_REMOTE, '/patients')[1] | |
878 DoGet(_REMOTE, '/patients/%s' % a, data = { '_method' : 'DELETE' }) | |
879 self.assertEqual(1, len(DoGet(_REMOTE, '/patients'))) | |
880 DoGet(_REMOTE, '/patients/%s' % b, data = { '_method' : 'DELETE' }) | |
881 self.assertEqual(0, len(DoGet(_REMOTE, '/patients'))) | |
882 | |
883 | |
884 def test_faking_google_put(self): | |
885 UploadInstance(_REMOTE, 'Knee/T1/IM-0001-0001.dcm') | |
886 UploadInstance(_REMOTE, 'Brainix/Flair/IM-0001-0001.dcm') | |
887 self.assertEqual(2, len(DoGet(_REMOTE, '/patients'))) | |
888 a = DoGet(_REMOTE, '/patients')[0] | |
889 b = DoGet(_REMOTE, '/patients')[1] | |
890 self.assertEqual(0, DoGet(_REMOTE, '/patients/%s/protected' % a)) | |
891 DoPost(_REMOTE, '/patients/%s/protected' % a, headers = { 'X-HTTP-Method-Override' : 'PUT' }, data = '0') | |
892 self.assertEqual(0, DoGet(_REMOTE, '/patients/%s/protected' % a)) | |
893 DoPost(_REMOTE, '/patients/%s/protected' % a, headers = { 'X-HTTP-Method-Override' : 'PUT' }, data = '1') | |
894 self.assertEqual(1, DoGet(_REMOTE, '/patients/%s/protected' % a)) | |
895 DoPost(_REMOTE, '/patients/%s/protected' % a, headers = { 'X-HTTP-Method-Override' : 'PUT' }, data = '0') | |
896 self.assertEqual(0, DoGet(_REMOTE, '/patients/%s/protected' % a)) | |
897 | |
898 | |
899 def test_faking_google_delete(self): | |
900 UploadInstance(_REMOTE, 'Knee/T1/IM-0001-0001.dcm') | |
901 UploadInstance(_REMOTE, 'Brainix/Flair/IM-0001-0001.dcm') | |
902 self.assertEqual(2, len(DoGet(_REMOTE, '/patients'))) | |
903 a = DoGet(_REMOTE, '/patients')[0] | |
904 b = DoGet(_REMOTE, '/patients')[1] | |
905 DoPost(_REMOTE, '/patients/%s' % a, headers = { 'X-HTTP-Method-Override' : 'DELETE' }) | |
906 self.assertEqual(1, len(DoGet(_REMOTE, '/patients'))) | |
907 DoPost(_REMOTE, '/patients/%s' % b, headers = { 'X-HTTP-Method-Override' : 'DELETE' }) | |
908 self.assertEqual(0, len(DoGet(_REMOTE, '/patients'))) | |
909 | |
910 | |
911 def test_lua(self): | |
912 self.assertEqual(42, DoPost(_REMOTE, '/tools/execute-script', 'print(42)')) | |
913 self.assertTrue(IsDefinedInLua(_REMOTE, 'PrintRecursive')) | |
914 self.assertFalse(IsDefinedInLua(_REMOTE, 'HelloWorld')) | |
915 | |
916 | |
917 def test_metadata(self): | |
918 UploadInstance(_REMOTE, 'Knee/T1/IM-0001-0001.dcm') | |
919 p = DoGet(_REMOTE, '/patients')[0] | |
920 i = DoGet(_REMOTE, '/instances')[0] | |
921 | |
922 m = DoGet(_REMOTE, '/patients/%s/metadata' % p) | |
923 self.assertEqual(1, len(m)) | |
924 self.assertEqual('LastUpdate', m[0]) | |
925 | |
926 m = DoGet(_REMOTE, '/instances/%s/metadata' % i) | |
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927 self.assertEqual(6, len(m)) |
12 | 928 self.assertTrue('IndexInSeries' in m) |
929 self.assertTrue('ReceptionDate' in m) | |
930 self.assertTrue('RemoteAET' in m) | |
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931 self.assertTrue('Origin' in m) |
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932 self.assertTrue('TransferSyntax' in m) |
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933 self.assertTrue('SopClassUid' in m) |
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934 self.assertEqual(DoGet(_REMOTE, '/instances/%s/metadata/IndexInSeries' % i), 1) |
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935 self.assertEqual(DoGet(_REMOTE, '/instances/%s/metadata/Origin' % i), 'RestApi') |
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936 self.assertEqual(DoGet(_REMOTE, '/instances/%s/metadata/RemoteAET' % i), '') # None, received by REST API |
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937 self.assertEqual(DoGet(_REMOTE, '/instances/%s/metadata/TransferSyntax' % i), '1.2.840.10008.1.2.4.91') # JPEG2k |
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938 self.assertEqual(DoGet(_REMOTE, '/instances/%s/metadata/SopClassUid' % i), '1.2.840.10008.5.1.4.1.1.4') |
12 | 939 |
940 # Play with custom metadata | |
941 DoPut(_REMOTE, '/patients/%s/metadata/5555' % p, 'coucou') | |
942 m = DoGet(_REMOTE, '/patients/%s/metadata' % p) | |
943 self.assertEqual(2, len(m)) | |
944 self.assertTrue('LastUpdate' in m) | |
945 self.assertTrue('5555' in m) | |
946 self.assertEqual('coucou', DoGet(_REMOTE, '/patients/%s/metadata/5555' % p)) | |
947 DoPut(_REMOTE, '/patients/%s/metadata/5555' % p, 'hello') | |
948 self.assertEqual('hello', DoGet(_REMOTE, '/patients/%s/metadata/5555' % p)) | |
949 DoDelete(_REMOTE, '/patients/%s/metadata/5555' % p) | |
950 m = DoGet(_REMOTE, '/patients/%s/metadata' % p) | |
951 self.assertEqual(1, len(m)) | |
952 self.assertTrue('LastUpdate' in m) | |
13 | 953 |
954 | |
955 def test_statistics(self): | |
956 # Upload 16 instances | |
957 for i in range(4): | |
958 UploadInstance(_REMOTE, 'Brainix/Flair/IM-0001-000%d.dcm' % (i + 1)) | |
959 UploadInstance(_REMOTE, 'Brainix/Epi/IM-0001-000%d.dcm' % (i + 1)) | |
960 UploadInstance(_REMOTE, 'Knee/T1/IM-0001-000%d.dcm' % (i + 1)) | |
961 UploadInstance(_REMOTE, 'Knee/T2/IM-0001-000%d.dcm' % (i + 1)) | |
962 | |
963 s = DoGet(_REMOTE, '/statistics') | |
964 self.assertEqual(16, s['CountInstances']) | |
965 self.assertEqual(2, s['CountPatients']) | |
966 self.assertEqual(2, s['CountStudies']) | |
967 self.assertEqual(4, s['CountSeries']) | |
968 d = int(s['TotalUncompressedSize']) | |
969 | |
970 e = 0 | |
971 for patient in DoGet(_REMOTE, '/patients'): | |
972 s = DoGet(_REMOTE, '/patients/%s/statistics' % patient) | |
973 self.assertEqual(8, s['CountInstances']) | |
974 self.assertEqual(1, s['CountStudies']) | |
975 self.assertEqual(2, s['CountSeries']) | |
976 e += int(s['UncompressedSize']) | |
977 | |
978 for study in DoGet(_REMOTE, '/studies'): | |
979 s = DoGet(_REMOTE, '/studies/%s/statistics' % study) | |
980 self.assertEqual(8, s['CountInstances']) | |
981 self.assertEqual(2, s['CountSeries']) | |
982 e += int(s['UncompressedSize']) | |
983 | |
984 for series in DoGet(_REMOTE, '/series'): | |
985 s = DoGet(_REMOTE, '/series/%s/statistics' % series) | |
986 self.assertEqual(4, s['CountInstances']) | |
987 e += int(s['UncompressedSize']) | |
988 | |
989 self.assertEqual(3 * d, e) | |
990 | |
991 | |
992 def test_custom_attachment(self): | |
993 UploadInstance(_REMOTE, 'Brainix/Flair/IM-0001-0001.dcm') | |
994 patient = DoGet(_REMOTE, '/patients')[0] | |
995 instance = DoGet(_REMOTE, '/instances')[0] | |
996 size = int(DoGet(_REMOTE, '/patients/%s/statistics' % patient)['DiskSize']) | |
997 self.assertEqual(size, int(DoGet(_REMOTE, '/statistics')['TotalDiskSize'])) | |
998 | |
999 self.assertEqual(0, len(DoGet(_REMOTE, '/patients/%s/attachments' % patient))) | |
1000 self.assertEqual(2, len(DoGet(_REMOTE, '/instances/%s/attachments' % instance))) | |
1001 self.assertTrue('dicom' in DoGet(_REMOTE, '/instances/%s/attachments' % instance)) | |
1002 self.assertTrue('dicom-as-json' in DoGet(_REMOTE, '/instances/%s/attachments' % instance)) | |
1003 | |
1004 self.assertRaises(Exception, lambda: DoPut(_REMOTE, '/patients/%s/attachments/22' % patient, 'hello')) | |
1005 hello = 'hellohellohellohellohellohellohellohellohello' | |
1006 DoPut(_REMOTE, '/patients/%s/attachments/1025' % patient, hello) | |
1007 self.assertEqual(int(DoGet(_REMOTE, '/patients/%s/statistics' % patient)['DiskSize']), | |
1008 int(DoGet(_REMOTE, '/statistics')['TotalDiskSize'])) | |
1009 self.assertEqual(int(DoGet(_REMOTE, '/patients/%s/statistics' % patient)['DiskSize']), | |
1010 size + int(DoGet(_REMOTE, '/patients/%s/attachments/1025/compressed-size' % patient))) | |
1011 | |
1012 DoPut(_REMOTE, '/patients/%s/attachments/1026' % patient, 'world') | |
1013 self.assertEqual(int(DoGet(_REMOTE, '/patients/%s/statistics' % patient)['DiskSize']), | |
1014 int(DoGet(_REMOTE, '/statistics')['TotalDiskSize'])) | |
1015 self.assertEqual(int(DoGet(_REMOTE, '/patients/%s/statistics' % patient)['DiskSize']), | |
1016 size + | |
1017 int(DoGet(_REMOTE, '/patients/%s/attachments/1025/compressed-size' % patient)) + | |
1018 int(DoGet(_REMOTE, '/patients/%s/attachments/1026/compressed-size' % patient))) | |
1019 | |
1020 self.assertEqual(2, len(DoGet(_REMOTE, '/patients/%s/attachments' % patient))) | |
1021 self.assertEqual(hello, DoGet(_REMOTE, '/patients/%s/attachments/1025/data' % patient)) | |
1022 self.assertEqual('world', DoGet(_REMOTE, '/patients/%s/attachments/1026/data' % patient)) | |
1023 DoPost(_REMOTE, '/patients/%s/attachments/1025/verify-md5' % patient) | |
1024 DoPost(_REMOTE, '/patients/%s/attachments/1026/verify-md5' % patient) | |
1025 DoPut(_REMOTE, '/patients/%s/attachments/1026' % patient, 'world2') | |
1026 self.assertEqual('world2', DoGet(_REMOTE, '/patients/%s/attachments/1026/data' % patient)) | |
1027 | |
1028 self.assertRaises(Exception, lambda: DoDelete(_REMOTE, '/instances/%s/attachments/dicom' % instance)) | |
1029 DoDelete(_REMOTE, '/patients/%s/attachments/1025' % patient) | |
1030 self.assertEqual(int(DoGet(_REMOTE, '/patients/%s/statistics' % patient)['DiskSize']), | |
1031 int(DoGet(_REMOTE, '/statistics')['TotalDiskSize'])) | |
1032 self.assertEqual(int(DoGet(_REMOTE, '/patients/%s/statistics' % patient)['DiskSize']), | |
1033 size + int(DoGet(_REMOTE, '/patients/%s/attachments/1026/compressed-size' % patient))) | |
1034 | |
1035 self.assertEqual(1, len(DoGet(_REMOTE, '/patients/%s/attachments' % patient))) | |
1036 DoDelete(_REMOTE, '/patients/%s/attachments/1026' % patient) | |
1037 self.assertEqual(0, len(DoGet(_REMOTE, '/patients/%s/attachments' % patient))) | |
1038 | |
1039 self.assertEqual(int(DoGet(_REMOTE, '/patients/%s/statistics' % patient)['DiskSize']), size) | |
1040 self.assertEqual(size, int(DoGet(_REMOTE, '/statistics')['TotalDiskSize'])) | |
1041 | |
1042 | |
1043 def test_incoming_storescu(self): | |
1044 self.assertEqual(0, len(DoGet(_REMOTE, '/patients'))) | |
45 | 1045 subprocess.check_call([ FindExecutable('storescu'), |
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1046 _REMOTE['Server'], str(_REMOTE['DicomPort']), |
13 | 1047 GetDatabasePath('ColorTestImageJ.dcm') ]) |
1048 self.assertEqual(1, len(DoGet(_REMOTE, '/patients'))) | |
1049 | |
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1050 i = DoGet(_REMOTE, '/instances') |
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1051 self.assertEqual(1, len(i)) |
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1052 m = DoGet(_REMOTE, '/instances/%s/metadata' % i[0]) |
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1053 self.assertEqual(6, len(m)) |
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1054 self.assertTrue('IndexInSeries' in m) |
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1055 self.assertTrue('ReceptionDate' in m) |
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1056 self.assertTrue('RemoteAET' in m) |
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|
1057 self.assertTrue('Origin' in m) |
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test TransferSyntax metadata
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1058 self.assertTrue('TransferSyntax' in m) |
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1059 self.assertTrue('SopClassUid' in m) |
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1060 self.assertEqual(DoGet(_REMOTE, '/instances/%s/metadata/IndexInSeries' % i[0]), 1) |
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1061 self.assertEqual(DoGet(_REMOTE, '/instances/%s/metadata/Origin' % i[0]), 'DicomProtocol') |
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1062 self.assertEqual(DoGet(_REMOTE, '/instances/%s/metadata/RemoteAET' % i[0]), 'STORESCU') |
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1063 self.assertEqual(DoGet(_REMOTE, '/instances/%s/metadata/TransferSyntax' % i[0]), '1.2.840.10008.1.2.1') |
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1064 self.assertEqual(DoGet(_REMOTE, '/instances/%s/metadata/SopClassUid' % i[0]), '1.2.840.10008.5.1.4.1.1.7') |
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1065 |
13 | 1066 |
1067 def test_incoming_findscu(self): | |
1068 UploadInstance(_REMOTE, 'Multiframe.dcm') | |
1069 UploadInstance(_REMOTE, 'ColorTestImageJ.dcm') | |
1070 | |
1071 i = CallFindScu([ '-k', '0008,0052=PATIENT', '-k', '0010,0010' ]) | |
1072 patientNames = re.findall('\(0010,0010\).*?\[(.*?)\]', i) | |
1073 self.assertEqual(2, len(patientNames)) | |
1074 self.assertTrue('Test Patient BG ' in patientNames) | |
1075 self.assertTrue('Anonymized' in patientNames) | |
1076 | |
1077 i = CallFindScu([ '-k', '0008,0052=SERIES', '-k', '0008,0021' ]) | |
1078 series = re.findall('\(0008,0021\).*?\[\s*(.*?)\s*\]', i) | |
1079 self.assertEqual(2, len(series)) | |
1080 self.assertTrue('20070208' in series) | |
1081 self.assertTrue('19980312' in series) | |
1082 | |
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diff
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1083 i = CallFindScu([ '-k', '0008,0052=SERIES', '-k', '0008,0021', '-k', 'ModalitiesInStudy=MR\\XA' ]) |
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1084 series = re.findall('\(0008,0021\).*?\[\s*(.*?)\s*\]', i) |
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ModalitiesInStudy subtest
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1085 self.assertEqual(1, len(series)) |
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ModalitiesInStudy subtest
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1086 self.assertTrue('19980312' in series) |
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ModalitiesInStudy subtest
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1087 |
13 | 1088 i = CallFindScu([ '-k', '0008,0052=SERIES', '-k', 'PatientName=Anonymized' ]) |
1089 series = re.findall('\(0010,0010\).*?\[\s*(.*?)\s*\]', i) | |
1090 self.assertEqual(1, len(series)) | |
1091 | |
1092 # Test the "CaseSentitivePN" flag (false by default) | |
1093 i = CallFindScu([ '-k', '0008,0052=SERIES', '-k', 'PatientName=anonymized' ]) | |
1094 series = re.findall('\(0010,0010\).*?\[\s*(.*?)\s*\]', i) | |
1095 self.assertEqual(1, len(series)) | |
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Test returning sequence values
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1096 |
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Test returning sequence values
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1097 # Test returning sequence values (only since Orthanc 0.9.5) |
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Test returning sequence values
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1098 i = CallFindScu([ '-k', '0008,0052=SERIES', '-k', '0008,2112' ]) # "ColorTestImageJ" has this sequence tag |
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Test returning sequence values
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|
1099 sequences = re.findall('\(0008,2112\)', i) |
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Test returning sequence values
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1100 self.assertEqual(1, len(sequences)) |
70 | 1101 |
1102 # Test range search (buggy if Orthanc <= 0.9.6) | |
1103 i = CallFindScu([ '-k', '0008,0052=STUDY', '-k', 'StudyDate=19980312-' ]) | |
1104 studies = re.findall('\(0008,0020\).*?\[\s*(.*?)\s*\]', i) | |
1105 self.assertEqual(2, len(studies)) | |
1106 self.assertTrue('20070208' in studies) | |
1107 self.assertTrue('19980312' in studies) | |
1108 i = CallFindScu([ '-k', '0008,0052=STUDY', '-k', 'StudyDate=19980312-19980312' ]) | |
1109 studies = re.findall('\(0008,0020\).*?\[\s*(.*?)\s*\]', i) | |
1110 self.assertEqual(1, len(studies)) | |
1111 self.assertTrue('19980312' in studies) | |
1112 i = CallFindScu([ '-k', '0008,0052=STUDY', '-k', 'StudyDate=-19980312' ]) | |
1113 studies = re.findall('\(0008,0020\).*?\[\s*(.*?)\s*\]', i) | |
1114 self.assertEqual(1, len(studies)) | |
1115 self.assertTrue('19980312' in studies) | |
13 | 1116 |
1117 | |
1118 def test_incoming_movescu(self): | |
1119 UploadInstance(_REMOTE, 'Multiframe.dcm') | |
1120 | |
1121 self.assertEqual(0, len(DoGet(_LOCAL, '/patients'))) | |
17 | 1122 CallMoveScu([ '--patient', '-k', '0008,0052=PATIENT', '-k', 'PatientID=none' ]) |
13 | 1123 self.assertEqual(0, len(DoGet(_LOCAL, '/patients'))) |
1124 CallMoveScu([ '--patient', '-k', '0008,0052=PATIENT', '-k', 'PatientID=12345678' ]) | |
1125 self.assertEqual(1, len(DoGet(_LOCAL, '/patients'))) | |
1126 | |
1127 | |
1128 def test_findscu(self): | |
1129 i = UploadInstance(_REMOTE, 'DummyCT.dcm')['ID'] | |
1130 j = UploadInstance(_REMOTE, 'Issue22.dcm')['ID'] | |
1131 k = UploadInstance(_REMOTE, 'ColorTestImageJ.dcm')['ID'] | |
1132 DoPost(_REMOTE, '/modalities/orthanctest/store', str(i), 'text/plain') | |
1133 | |
1134 # Test the "find-patient" level | |
1135 p = DoPost(_REMOTE, '/modalities/orthanctest/find-patient', { }) | |
1136 self.assertEqual(1, len(p)) | |
1137 self.assertEqual('ozp00SjY2xG', p[0]['PatientID']) | |
1138 | |
1139 # Test wildcards constraints. The "LO" value representation | |
1140 # for PatientID is always case-sensitive, but the "PN" for | |
1141 # PatientName might depend on the implementation: | |
1142 # "GenerateConfigurationForTests.py" will force it to be case | |
1143 # insensitive (which was the default until Orthanc 0.8.6). | |
1144 p = DoPost(_REMOTE, '/modalities/orthanctest/find-patient', { 'PatientName' : 'K*' }) | |
1145 self.assertEqual(1, len(p)) | |
1146 | |
1147 p = DoPost(_REMOTE, '/modalities/orthanctest/find-patient', { 'PatientName' : 'k*' }) | |
1148 self.assertEqual(1, len(p)) | |
1149 | |
1150 p = DoPost(_REMOTE, '/modalities/orthanctest/find-patient', { 'PatientID' : 'ozp*' }) | |
1151 self.assertEqual(1, len(p)) | |
1152 | |
1153 p = DoPost(_REMOTE, '/modalities/orthanctest/find-patient', { 'PatientID' : 'o?p*' }) | |
1154 self.assertEqual(1, len(p)) | |
1155 | |
1156 p = DoPost(_REMOTE, '/modalities/orthanctest/find-patient', { 'PatientID' : '0?q*' }) | |
1157 self.assertEqual(0, len(p)) | |
1158 | |
1159 p = DoPost(_REMOTE, '/modalities/orthanctest/find-patient', { 'PatientName' : 'B*' }) | |
1160 self.assertEqual(0, len(p)) | |
1161 | |
1162 p = DoPost(_REMOTE, '/modalities/orthanctest/find-patient', { 'PatientName' : 'b*' }) | |
1163 self.assertEqual(0, len(p)) | |
1164 | |
1165 DoPost(_REMOTE, '/modalities/orthanctest/store', str(j), 'text/plain') | |
1166 DoPost(_REMOTE, '/modalities/orthanctest/store', str(k), 'text/plain') | |
1167 DoPost(_REMOTE, '/modalities/orthanctest/find-patient', { }) | |
1168 self.assertEqual(3, len(DoPost(_REMOTE, '/modalities/orthanctest/find-patient', { }))) | |
1169 | |
1170 p = DoPost(_REMOTE, '/modalities/orthanctest/find-patient', { 'PatientName' : 'A*' }) | |
1171 self.assertEqual(2, len(p)) | |
1172 | |
1173 # Test the "find-study" level. This is the instance "ColorTestImageJ.dcm" | |
1174 s = DoPost(_REMOTE, '/modalities/orthanctest/find-study', { 'PatientID' : 'B9uTHKOZ' }) | |
1175 self.assertEqual(1, len(s)) | |
1176 self.assertEqual('20070208', s[0]['StudyDate']) | |
1177 | |
1178 # Test range searches | |
1179 t = DoPost(_REMOTE, '/modalities/orthanctest/find-study', { 'PatientID' : 'B9uTHKOZ', | |
1180 'StudyDate' : '-20070101' }) | |
1181 self.assertEqual(0, len(t)) | |
1182 | |
1183 t = DoPost(_REMOTE, '/modalities/orthanctest/find-study', { 'PatientID' : 'B9uTHKOZ', | |
1184 'StudyDate' : '20090101-' }) | |
1185 self.assertEqual(0, len(t)) | |
1186 | |
1187 t = DoPost(_REMOTE, '/modalities/orthanctest/find-study', { 'PatientID' : 'B9uTHKOZ', | |
1188 'StudyDate' : '20070101-' }) | |
1189 self.assertEqual(1, len(t)) | |
1190 | |
1191 t = DoPost(_REMOTE, '/modalities/orthanctest/find-study', { 'PatientID' : 'B9uTHKOZ', | |
1192 'StudyDate' : '-20090101' }) | |
1193 self.assertEqual(1, len(t)) | |
1194 | |
1195 t = DoPost(_REMOTE, '/modalities/orthanctest/find-study', { 'PatientID' : 'B9uTHKOZ', | |
1196 'StudyDate' : '20070207-20070207' }) | |
1197 self.assertEqual(0, len(t)) | |
1198 | |
1199 t = DoPost(_REMOTE, '/modalities/orthanctest/find-study', { 'PatientID' : 'B9uTHKOZ', | |
1200 'StudyDate' : '20070208-20070208' }) | |
1201 self.assertEqual(1, len(t)) | |
1202 | |
1203 t = DoPost(_REMOTE, '/modalities/orthanctest/find-study', { 'PatientID' : 'B9uTHKOZ', | |
1204 'StudyDate' : '20070209-20070209' }) | |
1205 self.assertEqual(0, len(t)) | |
1206 | |
1207 # Test the ModalitiesInStudy tag | |
1208 t = DoPost(_REMOTE, '/modalities/orthanctest/find-study', { | |
1209 'PatientID' : 'B9uTHKOZ', | |
1210 'ModalitiesInStudy' : 'US' }) | |
1211 self.assertEqual(0, len(t)) | |
1212 | |
1213 t = DoPost(_REMOTE, '/modalities/orthanctest/find-study', { | |
1214 'PatientID' : 'B9uTHKOZ', | |
1215 'ModalitiesInStudy' : 'CT' }) | |
1216 self.assertEqual(1, len(t)) | |
1217 | |
1218 t = DoPost(_REMOTE, '/modalities/orthanctest/find-study', { | |
1219 'PatientID' : 'B9uTHKOZ', | |
1220 'ModalitiesInStudy' : 'US\\CT' }) | |
1221 self.assertEqual(1, len(t)) | |
1222 | |
1223 # Test the "find-series" level | |
1224 t = DoPost(_REMOTE, '/modalities/orthanctest/find-series', { | |
1225 'PatientID' : 'B9uTHKOZ', | |
1226 'StudyInstanceUID' : s[0]['StudyInstanceUID'] }) | |
1227 self.assertEqual(1, len(t)) | |
1228 | |
1229 # Test "\" separator | |
1230 t = DoPost(_REMOTE, '/modalities/orthanctest/find-series', { | |
1231 'PatientID' : 'B9uTHKOZ', | |
1232 'StudyInstanceUID' : s[0]['StudyInstanceUID'], | |
1233 'Modality' : 'MR\\CT\\US' }) | |
1234 self.assertEqual(1, len(t)) | |
1235 | |
1236 t = DoPost(_REMOTE, '/modalities/orthanctest/find-series', { | |
1237 'PatientID' : 'B9uTHKOZ', | |
1238 'StudyInstanceUID' : s[0]['StudyInstanceUID'], | |
1239 'Modality' : 'MR\\US' }) | |
1240 self.assertEqual(0, len(t)) | |
1241 | |
1242 | |
1243 def test_update_modalities(self): | |
1244 try: | |
1245 DoDelete(_REMOTE, '/modalities/toto') | |
1246 except: | |
1247 pass | |
1248 try: | |
1249 DoDelete(_REMOTE, '/modalities/tata') | |
1250 except: | |
1251 pass | |
1252 self.assertRaises(Exception, lambda: DoGet(_REMOTE, '/modalities/toto')) | |
1253 DoPut(_REMOTE, '/modalities/toto', [ "STORESCP", "localhost", 2000 ]) | |
116 | 1254 DoPut(_REMOTE, '/modalities/tata', [ "STORESCP", "localhost", 2000, 'MedInria' ]) # check backward compatiblity with obsolete manufacturer |
1255 DoDelete(_REMOTE, '/modalities/tata') | |
1256 DoPut(_REMOTE, '/modalities/tata', [ "STORESCP", "localhost", 2000, 'GenericNoWildcards' ]) | |
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Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
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|
1257 DoDelete(_REMOTE, '/modalities/tata') |
1a19f953f53c
also test GenericNoWildcardInDates
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
120
diff
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|
1258 DoPut(_REMOTE, '/modalities/tata', [ "STORESCP", "localhost", 2000, 'GenericNoWildcardInDates' ]) |
116 | 1259 self.assertRaises(Exception, lambda: DoPut(_REMOTE, '/modalities/toto', [ "STORESCP", "localhost", 2000, 'InvalidManufacturerName' ])) |
13 | 1260 self.assertTrue('store' in DoGet(_REMOTE, '/modalities/toto')) |
1261 self.assertTrue('store' in DoGet(_REMOTE, '/modalities/tata')) | |
1262 DoDelete(_REMOTE, '/modalities/toto') | |
1263 DoDelete(_REMOTE, '/modalities/tata') | |
1264 self.assertRaises(Exception, lambda: DoGet(_REMOTE, '/modalities/toto')) | |
1265 self.assertRaises(Exception, lambda: DoGet(_REMOTE, '/modalities/tata')) | |
1266 | |
1267 | |
1268 def test_update_peers(self): | |
1269 # curl -X PUT http://localhost:8042/peers/toto -d '["http://localhost:8042/"]' -v | |
1270 try: | |
1271 DoDelete(_REMOTE, '/peers/toto') | |
1272 except: | |
1273 pass | |
1274 try: | |
1275 DoDelete(_REMOTE, '/peers/tata') | |
1276 except: | |
1277 pass | |
1278 self.assertRaises(Exception, lambda: DoGet(_REMOTE, '/peers/toto')) | |
1279 DoPut(_REMOTE, '/peers/toto', [ 'http://localhost:8042/' ]) | |
1280 DoPut(_REMOTE, '/peers/tata', [ 'http://localhost:8042/', 'user', 'pass' ]) | |
1281 self.assertRaises(Exception, lambda: DoPut(_REMOTE, '/peers/toto', [ 'http://localhost:8042/', 'a' ])) | |
1282 self.assertRaises(Exception, lambda: DoPut(_REMOTE, '/peers/toto', [ 'http://localhost:8042/', 'a', 'b', 'c' ])) | |
1283 self.assertTrue('store' in DoGet(_REMOTE, '/peers/toto')) | |
1284 self.assertTrue('store' in DoGet(_REMOTE, '/peers/tata')) | |
1285 DoDelete(_REMOTE, '/peers/toto') | |
1286 DoDelete(_REMOTE, '/peers/tata') | |
1287 self.assertRaises(Exception, lambda: DoGet(_REMOTE, '/peers/toto')) | |
1288 self.assertRaises(Exception, lambda: DoGet(_REMOTE, '/peers/tata')) | |
1289 | |
1290 | |
1291 def test_mesterhazy_modification(self): | |
1292 # When I modify a series ( eg. curl | |
1293 # http://localhost:8042/series/uidhere/modify -X POST -d | |
1294 # '{"Replace":{"SeriesDate":"19990101"}}' ) the modified | |
1295 # series is added to a new Study, instead of the existing | |
1296 # Study. Fixed in Orthanc 0.7.5 | |
1297 | |
1298 u = UploadInstance(_REMOTE, 'DummyCT.dcm') | |
1299 study = 'b9c08539-26f93bde-c81ab0d7-bffaf2cb-a4d0bdd0' | |
1300 series = 'f2635388-f01d497a-15f7c06b-ad7dba06-c4c599fe' | |
1301 | |
1302 modified = DoPost(_REMOTE, '/series/%s/modify' % series, | |
1303 json.dumps({ "Replace" : { "SeriesDate" : "19990101" }})) | |
1304 | |
1305 self.assertEqual(study, DoGet(_REMOTE, '/series/%s' % modified['ID']) ['ParentStudy']) | |
1306 | |
1307 | |
1308 def test_create(self): | |
1309 i = DoPost(_REMOTE, '/tools/create-dicom', | |
1310 json.dumps({ | |
1311 'PatientName' : 'Jodogne', | |
1312 'Modality' : 'CT', | |
58 | 1313 'SOPClassUID' : '1.2.840.10008.5.1.4.1.1.1', |
13 | 1314 'PixelData' : 'data:image/png;base64,iVBORw0KGgoAAAANSUhEUgAAAAUAAAAFCAYAAACNbyblAAAAHElEQVQI12P4//8/w38GIAXDIBKE0DHxgljNBAAO9TXL0Y4OHwAAAABJRU5ErkJggg==' # red dot in RGBA |
1315 })) | |
1316 | |
1317 self.assertEqual('Jodogne', DoGet(_REMOTE, '/instances/%s/content/PatientName' % i['ID']).strip()) | |
1318 self.assertEqual('CT', DoGet(_REMOTE, '/instances/%s/content/Modality' % i['ID']).strip()) | |
1319 | |
1320 png = GetImage(_REMOTE, '/instances/%s/preview' % i['ID']) | |
1321 self.assertEqual((5, 5), png.size) | |
1322 | |
38 | 1323 j = DoGet(_REMOTE, i['Path']) |
1324 self.assertEqual('Instance', j['Type']) | |
1325 self.assertEqual(j['ID'], i['ID']) | |
1326 | |
13 | 1327 |
1328 def test_pilates(self): | |
1329 # "SCU failed error when accessing orthanc with osirix" by | |
1330 # Pilates Agentur (Mar 10, 2014 at 9:33 PM) | |
1331 i = UploadInstance(_REMOTE, 'PilatesArgenturGEUltrasoundOsiriX.dcm')['ID'] | |
1332 self.assertEqual(0, len(DoGet(_LOCAL, '/patients'))) | |
1333 j = DoPost(_REMOTE, '/modalities/orthanctest/store', str(i), 'text/plain') | |
1334 self.assertEqual(1, len(DoGet(_LOCAL, '/patients'))) | |
1335 | |
1336 | |
1337 def test_shared_tags(self): | |
1338 a = UploadInstance(_REMOTE, 'Knee/T1/IM-0001-0001.dcm')['ID'] | |
1339 b = UploadInstance(_REMOTE, 'Knee/T1/IM-0001-0002.dcm')['ID'] | |
1340 p = DoGet(_REMOTE, '/patients')[0] | |
1341 | |
1342 self.assertTrue('0010,0010' in DoGet(_REMOTE, '/patients/%s/shared-tags' % p)) | |
1343 self.assertTrue('PatientName' in DoGet(_REMOTE, '/patients/%s/shared-tags?simplify' % p)) | |
1344 self.assertTrue('0008,1030' in DoGet(_REMOTE, '/patients/%s/shared-tags' % p)) | |
1345 self.assertTrue('StudyDescription' in DoGet(_REMOTE, '/patients/%s/shared-tags?simplify' % p)) | |
1346 self.assertTrue('0008,103e' in DoGet(_REMOTE, '/patients/%s/shared-tags' % p)) | |
1347 self.assertTrue('SeriesDescription' in DoGet(_REMOTE, '/patients/%s/shared-tags?simplify' % p)) | |
1348 self.assertFalse('0008,0018' in DoGet(_REMOTE, '/patients/%s/shared-tags' % p)) | |
1349 self.assertFalse('SOPInstanceUID' in DoGet(_REMOTE, '/patients/%s/shared-tags?simplify' % p)) | |
1350 | |
1351 self.assertTrue('0008,0018' in DoGet(_REMOTE, '/instances/%s/tags' % a)) | |
1352 self.assertTrue('SOPInstanceUID' in DoGet(_REMOTE, '/instances/%s/tags?simplify' % a)) | |
1353 | |
1354 | |
1355 def test_modules(self): | |
1356 a = UploadInstance(_REMOTE, 'Knee/T1/IM-0001-0001.dcm')['ID'] | |
1357 p = DoGet(_REMOTE, '/patients')[0] | |
1358 s = DoGet(_REMOTE, '/studies')[0] | |
1359 t = DoGet(_REMOTE, '/series')[0] | |
1360 | |
1361 self.assertTrue('0010,0010' in DoGet(_REMOTE, '/patients/%s/module' % p)) | |
1362 self.assertTrue('PatientName' in DoGet(_REMOTE, '/patients/%s/module?simplify' % p)) | |
1363 self.assertTrue('0010,0010' in DoGet(_REMOTE, '/studies/%s/module-patient' % p)) | |
1364 self.assertTrue('PatientName' in DoGet(_REMOTE, '/studies/%s/module-patient?simplify' % p)) | |
1365 self.assertTrue('0008,1030' in DoGet(_REMOTE, '/studies/%s/module' % s)) | |
1366 self.assertTrue('StudyDescription' in DoGet(_REMOTE, '/studies/%s/module?simplify' % s)) | |
1367 self.assertTrue('0008,103e' in DoGet(_REMOTE, '/series/%s/module' % p)) | |
1368 self.assertTrue('SeriesDescription' in DoGet(_REMOTE, '/series/%s/module?simplify' % p)) | |
1369 self.assertTrue('0008,0018' in DoGet(_REMOTE, '/instances/%s/module' % a)) | |
1370 self.assertTrue('SOPInstanceUID' in DoGet(_REMOTE, '/instances/%s/module?simplify' % a)) | |
1371 | |
1372 | |
1373 def test_auto_directory(self): | |
1374 a = UploadInstance(_REMOTE, 'Knee/T1/IM-0001-0001.dcm')['ID'] | |
1375 self.assertTrue('now' in DoGet(_REMOTE, '/tools')) | |
1376 self.assertTrue('dicom-conformance' in DoGet(_REMOTE, '/tools')) | |
87
4b24faec842b
test_reconstruct_json2 + test_private_tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
86
diff
changeset
|
1377 self.assertTrue('invalidate-tags' in DoGet(_REMOTE, '/tools')) |
13 | 1378 self.assertTrue(len(DoGet(_REMOTE, '/tools/dicom-conformance')) > 1000) |
1379 self.assertTrue('orthanctest' in DoGet(_REMOTE, '/modalities')) | |
1380 self.assertTrue('echo' in DoGet(_REMOTE, '/modalities/orthanctest')) | |
1381 self.assertTrue('find' in DoGet(_REMOTE, '/modalities/orthanctest')) | |
1382 self.assertTrue('find-instance' in DoGet(_REMOTE, '/modalities/orthanctest')) | |
1383 self.assertTrue('find-patient' in DoGet(_REMOTE, '/modalities/orthanctest')) | |
1384 self.assertTrue('find-series' in DoGet(_REMOTE, '/modalities/orthanctest')) | |
1385 self.assertTrue('find-study' in DoGet(_REMOTE, '/modalities/orthanctest')) | |
1386 self.assertTrue('store' in DoGet(_REMOTE, '/modalities/orthanctest')) | |
1387 self.assertTrue('store' in DoGet(_REMOTE, '/peers/peer')) | |
1388 self.assertTrue('matlab' in DoGet(_REMOTE, '/instances/%s/frames/0' % a)) | |
79 | 1389 self.assertTrue('raw' in DoGet(_REMOTE, '/instances/%s/frames/0' % a)) |
13 | 1390 self.assertRaises(Exception, lambda: DoGet(_REMOTE, '/tools/nope')) |
28 | 1391 self.assertRaises(Exception, lambda: DoGet(_REMOTE, '/nope')) |
1392 self.assertRaises(Exception, lambda: DoGet(_REMOTE, '/nope/nope.html')) | |
1393 self.assertEqual(404, DoGetRaw(_REMOTE, '/nope')[0].status) | |
1394 self.assertEqual(404, DoGetRaw(_REMOTE, '/nope/nope.html')[0].status) | |
13 | 1395 |
1396 | |
1397 def test_echo(self): | |
1398 DoPost(_REMOTE, '/modalities/orthanctest/echo') | |
1399 | |
1400 | |
1401 def test_xml(self): | |
1402 json = DoGet(_REMOTE, '/tools', headers = { 'accept' : 'application/json' }) | |
1403 xml = minidom.parseString(DoGet(_REMOTE, '/tools', headers = { 'accept' : 'application/xml' })) | |
1404 items = xml.getElementsByTagName('root')[0].getElementsByTagName('item') | |
1405 self.assertEqual(len(items), len(json)) | |
1406 | |
1407 self.assertTrue('dicom-conformance' in json) | |
1408 | |
1409 ok = False | |
1410 for i in items: | |
1411 if i.childNodes[0].data == 'dicom-conformance': | |
1412 ok = True | |
1413 self.assertTrue(ok) | |
1414 | |
1415 | |
46
85b2e36ed392
explicit GoogleCode source
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
45
diff
changeset
|
1416 def test_googlecode_issue_16(self): |
13 | 1417 i = UploadInstance(_REMOTE, 'Issue16.dcm')['ID'] |
1418 t = DoGet(_REMOTE, '/instances/%s/tags?simplify' % i)['FrameIncrementPointer'] | |
1419 self.assertEqual('0018,1063', t) | |
1420 | |
1421 | |
46
85b2e36ed392
explicit GoogleCode source
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
45
diff
changeset
|
1422 def test_googlecode_issue_22(self): |
13 | 1423 s = UploadInstance(_REMOTE, 'Issue22.dcm')['ID'] |
1424 a = [ | |
1425 "f804691f62197040438f4627c6b994f1", # Frame 0 | |
1426 "c69eee9a51eea3e8611e82e578897254", | |
1427 "315666be83e2d0111c77bc0996d84901", | |
1428 "3e27aa959d911172c48a1436443c72b1", | |
1429 "958642c9e7e9d232d3869faff546058c", | |
1430 "5e7ea8e3e4230cae707d143481355c59", | |
1431 "eda37f83558d858a596175aed8b2ad47", | |
1432 "486713bd2895c4ecbe0e97715ac7f80a", | |
1433 "091ef729eb169e67da8a0faa9631f9a8", | |
1434 "5aa2b8c7ffe0a483efaa8e12417686ca", | |
1435 "e2f39e85896fe58876654b94cd0b5013", | |
1436 "6fd2129e4950abbe1be053bc814d5da8", | |
1437 "c3331a8ba7a757f3d423735ab7fa81f9", | |
1438 "746f808582156734dd6b6fdfd3a0b72c", | |
1439 "8075ea2b227a70c60ea6b7b75a6bb190", | |
1440 "806b8b3e300c615099c11a5ec23465aa", | |
1441 "7c836aa298ba6eef96434579af631a11", | |
1442 "a0357dc9f4f72d73a885c33d7c287446", | |
1443 "f25ba3be1cc7d7fad95706adc199ea7d", | |
1444 "8b114c526b8cbed6cad8a3248b7b480c", | |
1445 "44e6670f127e612a2b4aa60a0d207698", | |
1446 "b8945f90fe02facf2ace24ca1ecbe0a5", | |
1447 "95c796c2fa8f59018b15cf2987b1f79b", | |
1448 "ce0a51ab30224205b44920221dc27351", # Frame 23 | |
1449 ] | |
1450 | |
1451 self.assertEqual(24, len(DoGet(_REMOTE, '/instances/%s/frames' % s))) | |
1452 self.assertRaises(Exception, lambda: DoGet(_REMOTE, '/instances/%s/frames/24/preview' % s)) | |
1453 | |
1454 for i in range(len(a)): | |
1455 self.assertEqual(a[i], ComputeMD5(DoGet(_REMOTE, '/instances/%s/frames/%d/preview' % (s, i)))) | |
1456 | |
1457 | |
46
85b2e36ed392
explicit GoogleCode source
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
45
diff
changeset
|
1458 def test_googlecode_issue_19(self): |
21
2a29bcff60a7
tests of image decoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
18
diff
changeset
|
1459 # This is an image with "YBR_FULL" photometric interpretation, it is not supported by Orthanc |
13 | 1460 # gdcmconv -i /home/jodogne/DICOM/GdcmDatabase/US_DataSet/HDI5000_US/3EAF5E01 -w -o Issue19.dcm |
1461 | |
1462 a = UploadInstance(_REMOTE, 'Issue19.dcm')['ID'] | |
21
2a29bcff60a7
tests of image decoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
18
diff
changeset
|
1463 self.assertRaises(Exception, lambda: DoGet(_REMOTE, '/instances/941ad3c8-05d05b88-560459f9-0eae0e20-6cddd533/preview')) |
13 | 1464 |
1465 | |
46
85b2e36ed392
explicit GoogleCode source
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
45
diff
changeset
|
1466 def test_googlecode_issue_37(self): |
13 | 1467 # Same test for issues 35 and 37. Fixed in Orthanc 0.9.1 |
1468 u = UploadInstance(_REMOTE, 'Beaufix/IM-0001-0001.dcm')['ID'] | |
1469 | |
1470 a = DoPost(_REMOTE, '/tools/find', { 'Level' : 'Series', | |
1471 'CaseSensitive' : True, | |
1472 'Query' : { 'StationName' : 'SMR4-MP3' }}) | |
1473 self.assertEqual(1, len(a)) | |
14 | 1474 |
1475 | |
1476 def test_rest_find(self): | |
1477 # Upload 8 instances | |
1478 for i in range(2): | |
1479 UploadInstance(_REMOTE, 'Brainix/Flair/IM-0001-000%d.dcm' % (i + 1)) | |
1480 UploadInstance(_REMOTE, 'Brainix/Epi/IM-0001-000%d.dcm' % (i + 1)) | |
1481 UploadInstance(_REMOTE, 'Knee/T1/IM-0001-000%d.dcm' % (i + 1)) | |
1482 UploadInstance(_REMOTE, 'Knee/T2/IM-0001-000%d.dcm' % (i + 1)) | |
1483 | |
1484 a = DoPost(_REMOTE, '/tools/find', { 'Level' : 'Patient', | |
1485 'CaseSensitive' : False, | |
1486 'Query' : { 'PatientName' : '*n*' }}) | |
1487 self.assertEqual(2, len(a)) | |
1488 | |
1489 a = DoPost(_REMOTE, '/tools/find', { 'Level' : 'Patient', | |
1490 'CaseSensitive' : True, | |
1491 'Query' : { 'PatientName' : '*n*' }}) | |
1492 self.assertEqual(0, len(a)) | |
1493 | |
1494 a = DoPost(_REMOTE, '/tools/find', { 'Expand' : True, | |
1495 'Level' : 'Patient', | |
1496 'CaseSensitive' : False, | |
1497 'Query' : { 'PatientName' : '*ne*' }}) | |
1498 self.assertEqual(1, len(a)) | |
1499 self.assertEqual('20080822', a[0]['MainDicomTags']['PatientBirthDate']) | |
1500 | |
1501 a = DoPost(_REMOTE, '/tools/find', { 'Level' : 'Patient', | |
1502 'CaseSensitive' : True, | |
1503 'Query' : { 'PatientName' : '*ne*' }}) | |
1504 self.assertEqual(0, len(a)) | |
1505 | |
1506 a = DoPost(_REMOTE, '/tools/find', { 'Level' : 'Study', | |
1507 'CaseSensitive' : True, | |
1508 'Query' : { 'PatientName' : '*NE*' }}) | |
1509 self.assertEqual(1, len(a)) | |
1510 | |
1511 a = DoPost(_REMOTE, '/tools/find', { 'Level' : 'Series', | |
1512 'CaseSensitive' : True, | |
1513 'Query' : { 'PatientName' : '*NE*' }}) | |
1514 self.assertEqual(2, len(a)) | |
1515 | |
1516 a = DoPost(_REMOTE, '/tools/find', { 'Level' : 'Instance', | |
1517 'CaseSensitive' : True, | |
1518 'Query' : { 'PatientName' : '*NE*' }}) | |
1519 self.assertEqual(4, len(a)) | |
1520 | |
1521 a = DoPost(_REMOTE, '/tools/find', { 'Level' : 'Patient', 'Query' : { }}) | |
1522 self.assertEqual(2, len(a)) | |
1523 | |
1524 a = DoPost(_REMOTE, '/tools/find', { 'Level' : 'Study', 'Query' : { }}) | |
1525 self.assertEqual(2, len(a)) | |
1526 | |
1527 a = DoPost(_REMOTE, '/tools/find', { 'Level' : 'Series', 'Query' : { }}) | |
1528 self.assertEqual(4, len(a)) | |
1529 | |
1530 a = DoPost(_REMOTE, '/tools/find', { 'Level' : 'Instance', 'Query' : { }}) | |
1531 self.assertEqual(8, len(a)) | |
1532 | |
1533 | |
1534 def test_rest_query_retrieve(self): | |
1535 self.assertEqual(0, len(DoGet(_REMOTE, '/patients'))) | |
1536 | |
1537 # Upload 8 instances | |
1538 for i in range(2): | |
1539 UploadInstance(_REMOTE, 'Brainix/Flair/IM-0001-000%d.dcm' % (i + 1)) | |
1540 UploadInstance(_REMOTE, 'Brainix/Epi/IM-0001-000%d.dcm' % (i + 1)) | |
1541 UploadInstance(_REMOTE, 'Knee/T1/IM-0001-000%d.dcm' % (i + 1)) | |
1542 UploadInstance(_REMOTE, 'Knee/T2/IM-0001-000%d.dcm' % (i + 1)) | |
1543 | |
1544 self.assertEqual(2, len(DoGet(_REMOTE, '/patients'))) | |
1545 for p in DoGet(_REMOTE, '/patients'): | |
1546 DoPost(_REMOTE, '/modalities/orthanctest/store', p) | |
1547 DoDelete(_REMOTE, '/patients/%s' % p) | |
1548 | |
1549 for q in DoGet(_REMOTE, '/queries'): | |
1550 DoDelete(_REMOTE, '/queries/%s' % q) | |
1551 | |
1552 self.assertEqual(0, len(DoGet(_REMOTE, '/patients'))) | |
1553 self.assertEqual(0, len(DoGet(_REMOTE, '/queries'))) | |
1554 a = DoPost(_REMOTE, '/modalities/orthanctest/query', { 'Level' : 'Series', | |
27 | 1555 'Query' : { |
1556 'PatientName' : '*NE*', | |
1557 'StudyDate' : '*', | |
1558 }})['ID'] | |
14 | 1559 self.assertEqual(1, len(DoGet(_REMOTE, '/queries'))) |
1560 | |
1561 b = DoGet(_REMOTE, '/queries/%s' % a) | |
1562 self.assertTrue('answers' in b) | |
1563 self.assertTrue('level' in b) | |
1564 self.assertTrue('modality' in b) | |
1565 self.assertTrue('query' in b) | |
1566 self.assertTrue('retrieve' in b) | |
1567 self.assertEqual('Series', DoGet(_REMOTE, '/queries/%s/level' % a)) | |
1568 self.assertEqual('orthanctest', DoGet(_REMOTE, '/queries/%s/modality' % a)) | |
1569 | |
1570 q = DoGet(_REMOTE, '/queries/%s/query?simplify' % a) | |
27 | 1571 self.assertEqual(2, len(q)) |
14 | 1572 self.assertTrue('PatientName' in q) |
27 | 1573 self.assertTrue('StudyDate' in q) |
14 | 1574 self.assertEqual('*NE*', q['PatientName']) |
27 | 1575 self.assertEqual('*', q['StudyDate']) |
14 | 1576 |
1577 self.assertEqual(2, len(DoGet(_REMOTE, '/queries/%s/answers' % a))) | |
1578 | |
1579 s = DoGet(_REMOTE, '/queries/%s/answers/0' % a) | |
1580 self.assertTrue('content' in s) | |
1581 self.assertTrue('retrieve' in s) | |
1582 | |
1583 s = DoGet(_REMOTE, '/queries/%s/answers/0/content?simplify' % a) | |
1584 self.assertEqual('887', s['PatientID']) | |
1585 self.assertEqual('2.16.840.1.113669.632.20.121711.10000160881', s['StudyInstanceUID']) | |
1586 | |
1587 self.assertEqual(0, len(DoGet(_REMOTE, '/patients'))) | |
1588 DoPost(_REMOTE, '/queries/%s/answers/0/retrieve' % a, 'ORTHANC') | |
1589 self.assertEqual(1, len(DoGet(_REMOTE, '/patients'))) | |
1590 self.assertEqual(1, len(DoGet(_REMOTE, '/studies'))) | |
1591 self.assertEqual(1, len(DoGet(_REMOTE, '/series'))) | |
1592 self.assertEqual(2, len(DoGet(_REMOTE, '/instances'))) | |
1593 | |
112 | 1594 DoPost(_REMOTE, '/queries/%s/answers/1/retrieve' % a, 'ORTHANC', 'application/json') # make sure the issue #36 is fixed (query/retrieve Rest API: /retrieve route shall accept application/json content type) |
14 | 1595 self.assertEqual(1, len(DoGet(_REMOTE, '/patients'))) |
1596 self.assertEqual(1, len(DoGet(_REMOTE, '/studies'))) | |
1597 self.assertEqual(2, len(DoGet(_REMOTE, '/series'))) | |
1598 self.assertEqual(4, len(DoGet(_REMOTE, '/instances'))) | |
1599 | |
1600 DoDelete(_REMOTE, '/queries/%s' % a) | |
1601 self.assertEqual(0, len(DoGet(_REMOTE, '/queries'))) | |
1602 | |
1603 | |
1604 def test_parent(self): | |
1605 u = UploadInstance(_REMOTE, 'DummyCT.dcm')['ID'] | |
1606 patient = '6816cb19-844d5aee-85245eba-28e841e6-2414fae2' | |
1607 study = 'b9c08539-26f93bde-c81ab0d7-bffaf2cb-a4d0bdd0' | |
1608 series = 'f2635388-f01d497a-15f7c06b-ad7dba06-c4c599fe' | |
1609 instance = '66a662ce-7430e543-bad44d47-0dc5a943-ec7a538d' | |
107
fddb35f7289d
test_bitbucket_issue_44
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
104
diff
changeset
|
1610 self.assertEqual(instance, u) |
14 | 1611 |
1612 a = DoGet(_REMOTE, '/studies/%s/patient' % study) | |
1613 self.assertEqual('Patient', a['Type']) | |
1614 self.assertEqual(patient, a['ID']) | |
1615 | |
1616 a = DoGet(_REMOTE, '/series/%s/patient' % series) | |
1617 self.assertEqual('Patient', a['Type']) | |
1618 self.assertEqual(patient, a['ID']) | |
1619 | |
1620 a = DoGet(_REMOTE, '/series/%s/study' % series) | |
1621 self.assertEqual('Study', a['Type']) | |
1622 self.assertEqual(study, a['ID']) | |
1623 | |
1624 a = DoGet(_REMOTE, '/instances/%s/patient' % instance) | |
1625 self.assertEqual('Patient', a['Type']) | |
1626 self.assertEqual(patient, a['ID']) | |
1627 | |
1628 a = DoGet(_REMOTE, '/instances/%s/study' % instance) | |
1629 self.assertEqual('Study', a['Type']) | |
1630 self.assertEqual(study, a['ID']) | |
1631 | |
1632 a = DoGet(_REMOTE, '/instances/%s/series' % instance) | |
1633 self.assertEqual('Series', a['Type']) | |
1634 self.assertEqual(series, a['ID']) | |
1635 | |
1636 | |
1637 def test_shanon(self): | |
1638 def Anonymize(instance, replacements = {}): | |
119 | 1639 return DoPost(_REMOTE, '/instances/%s/anonymize' % instance, { |
1640 'Replace' : replacements, | |
1641 'Force' : True, | |
1642 }, 'application/json') | |
14 | 1643 |
1644 self.assertEqual(0, len(DoGet(_REMOTE, '/instances'))) | |
1645 u = UploadInstance(_REMOTE, 'DummyCT.dcm')['ID'] | |
1646 self.assertEqual(1, len(DoGet(_REMOTE, '/instances'))) | |
1647 | |
1648 tags = [ 'PatientID', 'StudyInstanceUID', 'SeriesInstanceUID', 'SOPInstanceUID', 'DeidentificationMethod' ] | |
1649 ids = [ 'ozp00SjY2xG', | |
1650 '1.2.840.113619.2.176.2025.1499492.7391.1171285944.390', | |
1651 '1.2.840.113619.2.176.2025.1499492.7391.1171285944.394', | |
1652 '1.2.840.113619.2.176.2025.1499492.7040.1171286242.109' ] | |
1653 | |
1654 a = ExtractDicomTags(Anonymize(u), tags) | |
1655 for i in range(4): | |
1656 self.assertNotEqual(ids[i], a[i]) | |
1657 self.assertTrue(a[4].startswith('Orthanc')) | |
1658 | |
1659 a = ExtractDicomTags(Anonymize(u, { 'PatientName' : 'toto' }), tags) | |
1660 for i in range(4): | |
1661 self.assertNotEqual(ids[i], a[i]) | |
1662 self.assertFalse(a[4].startswith('Orthanc')) | |
1663 | |
1664 a = ExtractDicomTags(Anonymize(u, { 'SOPInstanceUID' : 'instance' }), tags) | |
1665 self.assertEqual('instance', a[3]) | |
1666 self.assertFalse(a[4].startswith('Orthanc')) | |
1667 | |
1668 a = ExtractDicomTags(Anonymize(u, { 'SeriesInstanceUID' : 'series' }), tags) | |
1669 self.assertEqual('series', a[2]) | |
1670 self.assertFalse(a[4].startswith('Orthanc')) | |
1671 | |
1672 a = ExtractDicomTags(Anonymize(u, { 'StudyInstanceUID' : 'study' }), tags) | |
1673 self.assertEqual('study', a[1]) | |
1674 self.assertFalse(a[4].startswith('Orthanc')) | |
1675 | |
1676 a = ExtractDicomTags(Anonymize(u, { 'PatientID' : 'patient' }), tags) | |
1677 self.assertEqual('patient', a[0]) | |
1678 self.assertFalse(a[4].startswith('Orthanc')) | |
1679 | |
1680 a = ExtractDicomTags(Anonymize(u, { 'PatientID' : 'patient', | |
1681 'StudyInstanceUID' : 'study', | |
1682 'SeriesInstanceUID' : 'series', | |
1683 'SOPInstanceUID' : 'instance' }), tags) | |
1684 self.assertEqual('patient', a[0]) | |
1685 self.assertFalse(a[4].startswith('Orthanc')) | |
1686 | |
1687 self.assertEqual(1, len(DoGet(_REMOTE, '/instances'))) | |
1688 | |
1689 | |
1690 def test_shanon_2(self): | |
1691 def Modify(instance, replacements = {}): | |
119 | 1692 return DoPost(_REMOTE, '/instances/%s/modify' % instance, { |
1693 'Replace' : replacements, | |
1694 'Force': True, | |
1695 }, 'application/json') | |
14 | 1696 |
1697 self.assertEqual(0, len(DoGet(_REMOTE, '/instances'))) | |
1698 u = UploadInstance(_REMOTE, 'DummyCT.dcm')['ID'] | |
1699 self.assertEqual(1, len(DoGet(_REMOTE, '/instances'))) | |
1700 | |
1701 tags = [ 'PatientID', 'StudyInstanceUID', 'SeriesInstanceUID', 'SOPInstanceUID', 'DeidentificationMethod' ] | |
1702 ids = [ 'ozp00SjY2xG', | |
1703 '1.2.840.113619.2.176.2025.1499492.7391.1171285944.390', | |
1704 '1.2.840.113619.2.176.2025.1499492.7391.1171285944.394', | |
1705 '1.2.840.113619.2.176.2025.1499492.7040.1171286242.109' ] | |
1706 | |
1707 a = ExtractDicomTags(Modify(u), tags) | |
1708 self.assertEqual(ids[0], a[0]) | |
1709 self.assertEqual(ids[1], a[1]) | |
1710 self.assertEqual(ids[2], a[2]) | |
1711 self.assertNotEqual(ids[3], a[3]) | |
1712 self.assertEqual(0, len(a[4])) | |
1713 | |
1714 a = ExtractDicomTags(Modify(u, { 'SOPInstanceUID' : 'instance' }), tags) | |
1715 self.assertEqual(ids[0], a[0]) | |
1716 self.assertEqual(ids[1], a[1]) | |
1717 self.assertEqual(ids[2], a[2]) | |
1718 self.assertEqual('instance', a[3]) | |
1719 | |
1720 a = ExtractDicomTags(Modify(u, { 'SeriesInstanceUID' : 'series' }), tags) | |
1721 self.assertEqual(ids[0], a[0]) | |
1722 self.assertEqual(ids[1], a[1]) | |
1723 self.assertEqual('series', a[2]) | |
1724 self.assertNotEqual(ids[3], a[3]) | |
1725 | |
1726 a = ExtractDicomTags(Modify(u, { 'StudyInstanceUID' : 'study' }), tags) | |
1727 self.assertEqual(ids[0], a[0]) | |
1728 self.assertEqual('study', a[1]) | |
1729 self.assertNotEqual(ids[2], a[2]) | |
1730 self.assertNotEqual(ids[3], a[3]) | |
1731 | |
1732 a = ExtractDicomTags(Modify(u, { 'PatientID' : 'patient' }), tags) | |
1733 self.assertEqual('patient', a[0]) | |
1734 self.assertNotEqual(ids[1], a[1]) | |
1735 self.assertNotEqual(ids[2], a[2]) | |
1736 self.assertNotEqual(ids[3], a[3]) | |
1737 | |
1738 a = ExtractDicomTags(Modify(u, { 'PatientID' : 'patient', | |
1739 'StudyInstanceUID' : 'study', | |
1740 'SeriesInstanceUID' : 'series', | |
1741 'SOPInstanceUID' : 'instance' }), tags) | |
1742 self.assertEqual('patient', a[0]) | |
1743 self.assertEqual('study', a[1]) | |
1744 self.assertEqual('series', a[2]) | |
1745 self.assertEqual('instance', a[3]) | |
1746 | |
1747 self.assertEqual(1, len(DoGet(_REMOTE, '/instances'))) | |
1748 | |
1749 | |
1750 def test_instances_tags(self): | |
1751 a = UploadInstance(_REMOTE, 'Knee/T1/IM-0001-0001.dcm')['ID'] | |
1752 b = UploadInstance(_REMOTE, 'Knee/T2/IM-0001-0001.dcm')['ID'] | |
1753 #a = UploadInstance(_REMOTE, 'Cardiac/MR.X.1.2.276.0.7230010.3.1.4.2831157719.2256.1336386937.676343')['ID'] | |
1754 #b = UploadInstance(_REMOTE, 'Cardiac/MR.X.1.2.276.0.7230010.3.1.4.2831157719.2256.1336386925.676329')['ID'] | |
1755 | |
1756 i = DoGet(_REMOTE, '/patients/%s/instances-tags?simplify' % DoGet(_REMOTE, '/patients')[0]) | |
1757 self.assertEqual(2, len(i)) | |
1758 self.assertEqual('887', i[i.keys()[0]]['PatientID']) | |
1759 self.assertEqual('887', i[i.keys()[1]]['PatientID']) | |
1760 | |
1761 i = DoGet(_REMOTE, '/patients/%s/instances-tags?simplify' % DoGet(_REMOTE, '/studies')[0]) | |
1762 self.assertEqual(2, len(i)) | |
1763 self.assertEqual('887', i[i.keys()[0]]['PatientID']) | |
1764 self.assertEqual('887', i[i.keys()[1]]['PatientID']) | |
1765 | |
1766 self.assertEqual(2, len(DoGet(_REMOTE, '/series'))) | |
1767 i = DoGet(_REMOTE, '/patients/%s/instances-tags?simplify' % DoGet(_REMOTE, '/series')[0]) | |
1768 self.assertEqual(1, len(i)) | |
1769 self.assertEqual('887', i[i.keys()[0]]['PatientID']) | |
1770 | |
1771 i = DoGet(_REMOTE, '/patients/%s/instances-tags?simplify' % DoGet(_REMOTE, '/series')[1]) | |
1772 self.assertEqual(1, len(i)) | |
1773 self.assertEqual('887', i[i.keys()[0]]['PatientID']) | |
1774 | |
1775 | |
1776 def test_lookup(self): | |
1777 a = DoPost(_REMOTE, '/tools/lookup', 'ozp00SjY2xG') | |
1778 self.assertEqual(0, len(a)) | |
1779 | |
1780 UploadInstance(_REMOTE, 'DummyCT.dcm') | |
1781 | |
1782 a = DoPost(_REMOTE, '/tools/lookup', 'ozp00SjY2xG') | |
1783 self.assertEqual(1, len(a)) | |
1784 self.assertEqual('Patient', a[0]['Type']) | |
1785 self.assertEqual('6816cb19-844d5aee-85245eba-28e841e6-2414fae2', a[0]['ID']) | |
1786 self.assertEqual('/patients/%s' % a[0]['ID'], a[0]['Path']) | |
1787 | |
1788 a = DoPost(_REMOTE, '/tools/lookup', '1.2.840.113619.2.176.2025.1499492.7391.1171285944.390') | |
1789 self.assertEqual(1, len(a)) | |
1790 self.assertEqual('Study', a[0]['Type']) | |
1791 self.assertEqual('b9c08539-26f93bde-c81ab0d7-bffaf2cb-a4d0bdd0', a[0]['ID']) | |
1792 self.assertEqual('/studies/%s' % a[0]['ID'], a[0]['Path']) | |
1793 | |
1794 a = DoPost(_REMOTE, '/tools/lookup', '1.2.840.113619.2.176.2025.1499492.7391.1171285944.394') | |
1795 self.assertEqual(1, len(a)) | |
1796 self.assertEqual('Series', a[0]['Type']) | |
1797 self.assertEqual('f2635388-f01d497a-15f7c06b-ad7dba06-c4c599fe', a[0]['ID']) | |
1798 self.assertEqual('/series/%s' % a[0]['ID'], a[0]['Path']) | |
1799 | |
1800 a = DoPost(_REMOTE, '/tools/lookup', '1.2.840.113619.2.176.2025.1499492.7040.1171286242.109') | |
1801 self.assertEqual(1, len(a)) | |
1802 self.assertEqual('Instance', a[0]['Type']) | |
1803 self.assertEqual('66a662ce-7430e543-bad44d47-0dc5a943-ec7a538d', a[0]['ID']) | |
1804 self.assertEqual('/instances/%s' % a[0]['ID'], a[0]['Path']) | |
1805 | |
1806 DropOrthanc(_REMOTE) | |
1807 a = DoPost(_REMOTE, '/tools/lookup', '3113719P') | |
1808 self.assertEqual(0, len(a)) | |
1809 | |
15 | 1810 |
1811 def test_autorouting(self): | |
1812 knee1 = 'Knee/T1/IM-0001-0001.dcm' | |
1813 knee2 = 'Knee/T2/IM-0001-0002.dcm' | |
1814 other = 'Brainix/Flair/IM-0001-0001.dcm' | |
1815 | |
1816 # Check that this version is >= 0.8.0 | |
1817 self.assertTrue(IsDefinedInLua(_REMOTE, '_InitializeJob')) | |
1818 self.assertTrue('orthanctest' in DoGet(_REMOTE, '/modalities')) | |
1819 | |
1820 UploadInstance(_REMOTE, knee1) | |
1821 self.assertEqual(0, len(DoGet(_LOCAL, '/instances'))) | |
1822 | |
1823 DropOrthanc(_REMOTE) | |
1824 DropOrthanc(_LOCAL) | |
1825 InstallLuaScript('Lua/Autorouting.lua') | |
1826 UploadInstance(_REMOTE, knee1) | |
1827 UploadInstance(_REMOTE, knee2) | |
1828 UploadInstance(_REMOTE, other) | |
1829 WaitEmpty(_REMOTE) | |
1830 UninstallLuaCallbacks() | |
1831 self.assertEqual(3, len(DoGet(_LOCAL, '/instances'))) | |
1832 | |
1833 DropOrthanc(_REMOTE) | |
1834 DropOrthanc(_LOCAL) | |
1835 InstallLuaScript('Lua/AutoroutingConditional.lua') | |
1836 UploadInstance(_REMOTE, knee1) | |
1837 UploadInstance(_REMOTE, knee2) | |
1838 UploadInstance(_REMOTE, other) | |
1839 WaitEmpty(_REMOTE) | |
1840 UninstallLuaCallbacks() | |
1841 self.assertEqual(2, len(DoGet(_LOCAL, '/instances'))) | |
1842 | |
1843 DropOrthanc(_REMOTE) | |
1844 DropOrthanc(_LOCAL) | |
1845 InstallLuaScript('Lua/AutoroutingModification.lua') | |
1846 UploadInstance(_REMOTE, knee1) | |
1847 WaitEmpty(_REMOTE) | |
1848 UninstallLuaCallbacks() | |
1849 i = DoGet(_LOCAL, '/instances') | |
1850 self.assertEqual(1, len(i)) | |
1851 | |
1852 with tempfile.NamedTemporaryFile(delete = True) as f: | |
1853 f.write(DoGet(_LOCAL, '/instances/%s/file' % i[0])) | |
1854 f.flush() | |
45 | 1855 routed = subprocess.check_output([ FindExecutable('dcm2xml'), f.name ]) |
15 | 1856 self.assertEqual('My Medical Device', re.search('"StationName">(.*?)<', routed).group(1).strip()) |
1857 self.assertEqual(None, re.search('"MilitaryRank"', routed)) | |
1858 self.assertEqual(None, re.search('"0051,0010"', routed)) # A private tag | |
17 | 1859 |
1860 | |
1861 def test_storescu_rf(self): | |
1862 i = UploadInstance(_REMOTE, 'KarstenHilbertRF.dcm')['ID'] | |
1863 self.assertEqual(0, len(DoGet(_LOCAL, '/instances'))) | |
1864 j = DoPost(_REMOTE, '/modalities/orthanctest/store', str(i), 'text/plain') | |
1865 self.assertEqual(1, len(DoGet(_LOCAL, '/instances'))) | |
18 | 1866 |
1867 | |
1868 def test_anonymize_instance(self): | |
1869 def AnonymizeAndUpload(instanceId, parameters): | |
1870 return DoPost(_REMOTE, '/instances', DoPost(_REMOTE, '/instances/%s/anonymize' % instanceId, parameters, | |
1871 'application/json'), 'application/dicom')['ID'] | |
1872 | |
1873 def ModifyAndUpload(instanceId, parameters): | |
1874 return DoPost(_REMOTE, '/instances', DoPost(_REMOTE, '/instances/%s/modify' % instanceId, parameters, | |
1875 'application/json'), 'application/dicom')['ID'] | |
1876 | |
1877 a = UploadInstance(_REMOTE, 'PrivateMDNTags.dcm')['ID'] | |
1878 s1 = DoGet(_REMOTE, '/instances/%s/content/PatientName' % a) | |
1879 s2 = DoGet(_REMOTE, '/instances/%s/content/00e1-10c2' % a) # Some private tag | |
1880 s3 = DoGet(_REMOTE, '/instances/%s/content/StudyDescription' % a) | |
1881 s4 = DoGet(_REMOTE, '/instances/%s/content/SeriesDescription' % a) | |
1882 s5 = DoGet(_REMOTE, '/instances/%s/content/InstitutionName' % a) | |
1883 | |
1884 b = AnonymizeAndUpload(a, '{}') | |
1885 self.assertNotEqual(s1, DoGet(_REMOTE, '/instances/%s/content/PatientName' % b)) | |
1886 self.assertRaises(Exception, lambda: DoGet(_REMOTE, '/instances/%s/content/00e1-10c2' % b)) | |
1887 | |
1888 # Keep private tag (only OK since Orthanc 0.8.0) | |
1889 b = AnonymizeAndUpload(a, '{"Keep":["00e1-10c2"]}') | |
1890 self.assertNotEqual(s1, DoGet(_REMOTE, '/instances/%s/content/PatientName' % b)) | |
1891 self.assertEqual(s2, DoGet(_REMOTE, '/instances/%s/content/00e1-10c2' % b)) | |
1892 | |
1893 b = AnonymizeAndUpload(a, '{"Keep":["00e1,10c2","PatientName"]}') | |
1894 self.assertEqual(s1, DoGet(_REMOTE, '/instances/%s/content/PatientName' % b)) | |
1895 self.assertEqual(s2, DoGet(_REMOTE, '/instances/%s/content/00e1-10c2' % b)) | |
1896 | |
1897 b = AnonymizeAndUpload(a, '{"Keep":["PatientName"],"Replace":{"00e1,10c2":"Hello"}}') | |
1898 self.assertEqual(s1, DoGet(_REMOTE, '/instances/%s/content/PatientName' % b)) | |
1899 self.assertTrue(DoGet(_REMOTE, '/instances/%s/content/00e1-10c2' % b).startswith('Hello')) | |
1900 | |
1901 # Examples from the Wiki | |
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1902 b = AnonymizeAndUpload(a, '{"Replace":{"PatientName":"hello","0010-0020":"world"},"Keep":["StudyDescription", "SeriesDescription"],"KeepPrivateTags": true,"Force":true}') |
18 | 1903 self.assertEqual('hello', DoGet(_REMOTE, '/instances/%s/content/0010-0010' % b).strip()) |
1904 self.assertEqual('world', DoGet(_REMOTE, '/instances/%s/content/PatientID' % b).strip()) | |
1905 self.assertEqual(s3, DoGet(_REMOTE, '/instances/%s/content/0008,1030' % b)) | |
1906 self.assertEqual(s4, DoGet(_REMOTE, '/instances/%s/content/0008,103e' % b)) | |
1907 self.assertEqual(s4, DoGet(_REMOTE, '/instances/%s/content/0008-103E' % b)) | |
1908 self.assertEqual(s2, DoGet(_REMOTE, '/instances/%s/content/00e1-10c2' % b)) | |
1909 DoGet(_REMOTE, '/instances/%s/content/InstitutionName' % a) | |
1910 self.assertRaises(Exception, lambda: DoGet(_REMOTE, '/instances/%s/content/InstitutionName' % b)) | |
1911 | |
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1912 b = ModifyAndUpload(a, '{"Replace":{"PatientName":"hello","PatientID":"world"},"Remove":["InstitutionName"],"RemovePrivateTags": true,"Force":true}') |
18 | 1913 self.assertEqual('hello', DoGet(_REMOTE, '/instances/%s/content/0010-0010' % b).strip()) |
1914 self.assertEqual('world', DoGet(_REMOTE, '/instances/%s/content/PatientID' % b).strip()) | |
1915 self.assertEqual(s3, DoGet(_REMOTE, '/instances/%s/content/0008,1030' % b)) | |
1916 self.assertEqual(s4, DoGet(_REMOTE, '/instances/%s/content/0008,103e' % b)) | |
1917 self.assertRaises(Exception, lambda: DoGet(_REMOTE, '/instances/%s/content/00e1-10c2' % b)) | |
1918 self.assertRaises(Exception, lambda: DoGet(_REMOTE, '/instances/%s/content/InstitutionName' % b)) | |
1919 | |
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1920 b = ModifyAndUpload(a, '{"Replace":{"PatientName":"hello","PatientID":"world"},"Force":true}') |
18 | 1921 self.assertEqual('hello', DoGet(_REMOTE, '/instances/%s/content/0010-0010' % b).strip()) |
1922 self.assertEqual('world', DoGet(_REMOTE, '/instances/%s/content/PatientID' % b).strip()) | |
1923 self.assertEqual(s2, DoGet(_REMOTE, '/instances/%s/content/00e1,10c2' % b)) | |
1924 self.assertEqual(s3, DoGet(_REMOTE, '/instances/%s/content/0008,1030' % b)) | |
1925 self.assertEqual(s4, DoGet(_REMOTE, '/instances/%s/content/0008-103E' % b)) | |
1926 self.assertEqual(s5, DoGet(_REMOTE, '/instances/%s/content/InstitutionName' % b)) | |
1927 | |
1928 | |
1929 # Test modify non-existing | |
1930 i = DoPost(_REMOTE, '/tools/create-dicom', | |
1931 json.dumps({ | |
1932 'PatientName' : 'Jodogne', | |
1933 'Modality' : 'CT', | |
1934 }))['ID'] | |
1935 | |
1936 self.assertEqual('Jodogne', DoGet(_REMOTE, '/instances/%s/content/PatientName' % i).strip()) | |
1937 self.assertRaises(Exception, lambda: DoGet(_REMOTE, '/instances/%s/content/StudyDescription' % i)) | |
1938 self.assertEqual('CT', DoGet(_REMOTE, '/instances/%s/content/Modality' % i).strip()) | |
1939 | |
1940 b = ModifyAndUpload(i, '{"Replace":{"StudyDescription":"hello","Modality":"world"}}') | |
1941 self.assertEqual('Jodogne', DoGet(_REMOTE, '/instances/%s/content/PatientName' % b).strip()) | |
1942 self.assertEqual('hello', DoGet(_REMOTE, '/instances/%s/content/StudyDescription' % b).strip()) | |
1943 self.assertEqual('world', DoGet(_REMOTE, '/instances/%s/content/Modality' % b).strip()) | |
1944 | |
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1945 |
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1946 def test_incoming_jpeg(self): |
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1947 def storescu(image, acceptUnknownSopClassUid): |
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1948 if acceptUnknownSopClassUid: |
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1949 tmp = [ '-xf', GetDatabasePath('UnknownSopClassUid.cfg'), 'Default' ] |
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1950 else: |
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1951 tmp = [ '-xs' ] |
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1952 |
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1953 with open(os.devnull, 'w') as FNULL: |
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1954 subprocess.check_call([ FindExecutable('storescu') ] + tmp + |
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1955 [ _REMOTE['Server'], str(_REMOTE['DicomPort']), |
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1956 GetDatabasePath(image) ], |
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1957 stderr = FNULL) |
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1958 |
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1959 self.assertEqual(0, len(DoGet(_REMOTE, '/patients'))) |
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1960 InstallLuaScript('Lua/TransferSyntaxDisable.lua') |
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1961 self.assertRaises(Exception, lambda: storescu('Knix/Loc/IM-0001-0001.dcm', False)) |
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1962 self.assertRaises(Exception, lambda: storescu('UnknownSopClassUid.dcm', True)) |
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1963 self.assertEqual(0, len(DoGet(_REMOTE, '/patients'))) |
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1964 InstallLuaScript('Lua/TransferSyntaxEnable.lua') |
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1965 DoPost(_REMOTE, '/tools/execute-script', "print('All special transfer syntaxes are now accepted')") |
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1966 storescu('Knix/Loc/IM-0001-0001.dcm', False) |
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1967 storescu('UnknownSopClassUid.dcm', True) |
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1968 self.assertEqual(2, len(DoGet(_REMOTE, '/patients'))) |
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1969 |
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1970 |
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1971 def test_storescu_jpeg(self): |
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1972 self.assertEqual(0, len(DoGet(_REMOTE, '/exports')['Exports'])) |
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1973 |
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1974 knixStudy = 'b9c08539-26f93bde-c81ab0d7-bffaf2cb-a4d0bdd0' |
64 | 1975 i = UploadInstance(_REMOTE, 'Knix/Loc/IM-0001-0001.dcm')['ID'] |
1976 | |
1977 # This is JPEG lossless | |
1978 self.assertEqual('1.2.840.10008.1.2.4.70', DoGet(_REMOTE, '/instances/%s/header?simplify' % i)['TransferSyntaxUID']) | |
1979 | |
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1980 UploadInstance(_REMOTE, 'Knix/Loc/IM-0001-0002.dcm') |
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1981 UploadInstance(_REMOTE, 'Knix/Loc/IM-0001-0003.dcm') |
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1982 |
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1983 a = UploadInstance(_REMOTE, 'Brainix/Flair/IM-0001-0001.dcm')['ID'] |
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1984 b = UploadInstance(_REMOTE, 'ColorTestImageJ.dcm')['ID'] |
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1985 self.assertEqual(0, len(DoGet(_LOCAL, '/instances'))) |
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1986 DoPost(_REMOTE, '/modalities/orthanctest/store', [ knixStudy, a, b ]) |
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1987 self.assertEqual(5, len(DoGet(_LOCAL, '/instances'))) |
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1988 |
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1989 self.assertEqual(3, len(DoGet(_REMOTE, '/exports')['Exports'])) |
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1990 |
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1991 DropOrthanc(_REMOTE) |
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1992 self.assertEqual(0, len(DoGet(_REMOTE, '/exports')['Exports'])) |
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1993 |
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1994 |
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1995 def test_pixel_data(self): |
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1996 jpeg = UploadInstance(_REMOTE, 'Knix/Loc/IM-0001-0001.dcm')['ID'] |
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1997 color = UploadInstance(_REMOTE, 'ColorTestImageJ.dcm')['ID'] |
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1998 phenix = UploadInstance(_REMOTE, 'Phenix/IM-0001-0001.dcm')['ID'] |
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1999 |
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2000 phenixSize = 358 * 512 * 2 |
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2001 colorSize = 1000 * 1000 * 3 |
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2002 jpegSize = 51918 |
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2003 |
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2004 self.assertEqual(1, len(DoGet(_REMOTE, '/instances/%s/content/7fe0-0010' % phenix))) |
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2005 self.assertEqual(1, len(DoGet(_REMOTE, '/instances/%s/content/7fe0-0010' % color))) |
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2006 self.assertEqual(2, len(DoGet(_REMOTE, '/instances/%s/content/7fe0-0010' % jpeg))) |
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2007 |
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2008 self.assertEqual(0, len(DoGet(_REMOTE, '/instances/%s/content/7fe0-0010/0' % jpeg))) |
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2009 self.assertEqual(jpegSize, len(DoGet(_REMOTE, '/instances/%s/content/7fe0-0010/1' % jpeg))) |
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2010 |
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2011 self.assertEqual(phenixSize, len(DoGet(_REMOTE, '/instances/%s/content/7fe0-0010/0' % phenix))) |
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2012 self.assertEqual(colorSize, len(DoGet(_REMOTE, '/instances/%s/content/7fe0-0010/0' % color))) |
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2013 |
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2014 |
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2015 def test_decode_brainix(self): |
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2016 brainix = [ |
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2017 UploadInstance(_REMOTE, 'Brainix/Epi/IM-0001-0001.dcm')['ID'], # (*) |
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2018 UploadInstance(_REMOTE, 'Formats/JpegLossless.dcm')['ID'], # JPEG-LS, same as (*) (since Orthanc 0.7.6) |
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2019 UploadInstance(_REMOTE, 'Formats/Jpeg.dcm')['ID'], # JPEG, same as (*) (since Orthanc 0.7.6) |
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2020 ] |
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2021 h = '6fb11b932d535c2be04beabd99793ff8' |
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2022 maxValue = 426.0 |
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2023 |
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2024 truth = Image.open(GetDatabasePath('Formats/Brainix.png')) |
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2025 for i in brainix: |
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2026 self.AssertSameImages(truth.getdata(), '/instances/%s/image-int16' % i) |
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2027 self.AssertSameImages(truth.getdata(), '/instances/%s/image-uint16' % i) |
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2028 |
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2029 truth2 = map(lambda x: min(255, x), truth.getdata()) |
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2030 for i in brainix: |
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2031 self.AssertSameImages(truth2, '/instances/%s/image-uint8' % i) |
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2032 |
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2033 truth2 = map(lambda x: x * 255.0 / maxValue, truth.getdata()) |
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|
2034 for i in brainix: |
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2035 self.AssertSameImages(truth2, '/instances/%s/preview' % i) |
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2036 |
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2037 for i in brainix: |
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2038 self.assertEqual(h, ComputeMD5(DoGet(_REMOTE, '/instances/%s/matlab' % i))) |
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2039 |
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|
2040 |
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2041 def test_decode_color(self): |
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2042 imagej = UploadInstance(_REMOTE, 'ColorTestImageJ.dcm')['ID'] |
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2043 color = UploadInstance(_REMOTE, 'ColorTestMalaterre.dcm')['ID'] |
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2044 |
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2045 for i in [ imagej, color ]: |
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2046 for j in [ 'image-uint8', 'image-uint16', 'image-int16' ]: |
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2047 self.assertRaises(Exception, lambda: DoGet(_REMOTE, '/instances/%s/%s' % (i, j))) |
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2048 |
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2049 self.assertEqual('c14c687f7a1ea9fe022479fc87c67274', ComputeMD5(DoGet(_REMOTE, '/instances/%s/preview' % imagej))) |
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2050 self.assertEqual('a87d122918a56f803bcfe9d2586b9125', ComputeMD5(DoGet(_REMOTE, '/instances/%s/preview' % color))) |
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|
2051 |
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2052 self.assertEqual('30cc46bfa7aba77a40e4178f6184c25a', ComputeMD5(DoGet(_REMOTE, '/instances/%s/matlab' % imagej))) |
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2053 self.assertEqual('ff195005cef06b59666fd220a9b4cd9a', ComputeMD5(DoGet(_REMOTE, '/instances/%s/matlab' % color))) |
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2054 |
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diff
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|
2055 |
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|
2056 def test_decode_rf(self): |
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|
2057 rf = UploadInstance(_REMOTE, 'KarstenHilbertRF.dcm')['ID'] |
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|
2058 truth = Image.open(GetDatabasePath('Formats/KarstenHilbertRF.png')) |
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|
2059 |
2a29bcff60a7
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diff
changeset
|
2060 self.AssertSameImages(truth.getdata(), '/instances/%s/image-uint8' % rf) |
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|
2061 self.AssertSameImages(truth.getdata(), '/instances/%s/image-uint16' % rf) |
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|
2062 self.AssertSameImages(truth.getdata(), '/instances/%s/image-int16' % rf) |
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|
2063 self.AssertSameImages(truth.getdata(), '/instances/%s/preview' % rf) |
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|
2064 |
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|
2065 self.assertEqual('42254d70efd2f4a1b8f3455909689f0e', ComputeMD5(DoGet(_REMOTE, '/instances/%s/matlab' % rf))) |
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diff
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|
2066 |
2a29bcff60a7
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18
diff
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|
2067 |
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changeset
|
2068 def test_decode_multiframe(self): |
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diff
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|
2069 mf = UploadInstance(_REMOTE, 'Multiframe.dcm')['ID'] |
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|
2070 |
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changeset
|
2071 # Test the first frame |
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2072 truth = Image.open(GetDatabasePath('Formats/Multiframe0.png')) |
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18
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|
2073 self.AssertSameImages(truth.getdata(), '/instances/%s/image-uint8' % mf) |
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|
2074 self.AssertSameImages(truth.getdata(), '/instances/%s/image-uint16' % mf) |
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|
2075 self.AssertSameImages(truth.getdata(), '/instances/%s/image-int16' % mf) |
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|
2076 self.AssertSameImages(truth.getdata(), '/instances/%s/preview' % mf) |
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|
2077 self.assertEqual('9812b99d93bbcd4e7684ded089b5dfb3', ComputeMD5(DoGet(_REMOTE, '/instances/%s/matlab' % mf))) |
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|
2078 |
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diff
changeset
|
2079 self.AssertSameImages(truth.getdata(), '/instances/%s/frames/0/image-uint16' % mf) |
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|
2080 |
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|
2081 # Test the last frame |
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2082 truth = Image.open(GetDatabasePath('Formats/Multiframe75.png')) |
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|
2083 self.AssertSameImages(truth.getdata(), '/instances/%s/frames/75/image-uint16' % mf) |
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|
2084 |
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18
diff
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|
2085 |
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|
2086 def test_decode_signed(self): |
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2087 signed = UploadInstance(_REMOTE, 'SignedCT.dcm')['ID'] |
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|
2088 minValue = -2000 |
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|
2089 maxValue = 4042 |
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|
2090 |
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|
2091 truth = Image.open(GetDatabasePath('Formats/SignedCT.png')) |
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|
2092 self.AssertSameImages(truth.getdata(), '/instances/%s/image-int16' % signed) |
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|
2093 |
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|
2094 truth2 = map(lambda x: 0 if x >= 32768 else x, truth.getdata()) |
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|
2095 self.AssertSameImages(truth2, '/instances/%s/image-uint16' % signed) |
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|
2096 |
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|
2097 truth3 = map(lambda x: 255 if x >= 256 else x, truth2) |
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|
2098 self.AssertSameImages(truth3, '/instances/%s/image-uint8' % signed) |
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diff
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|
2099 |
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|
2100 tmp = map(lambda x: x - 65536 if x >= 32768 else x, truth.getdata()) |
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|
2101 tmp = map(lambda x: (255.0 * (x - minValue)) / (maxValue - minValue), tmp) |
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|
2102 self.AssertSameImages(tmp, '/instances/%s/preview' % signed) |
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|
2103 |
2a29bcff60a7
tests of image decoding
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diff
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|
2104 self.assertEqual('b57e6c872a3da50877c7da689b03a444', ComputeMD5(DoGet(_REMOTE, '/instances/%s/matlab' % signed))) |
22 | 2105 |
2106 | |
46
85b2e36ed392
explicit GoogleCode source
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diff
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|
2107 def test_googlecode_issue_32(self): |
92
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test_findscu_encoding
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diff
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2108 self.assertRaises(Exception, lambda: DoPut(_REMOTE, '/tools/default-encoding', 'nope')) |
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test_findscu_encoding
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diff
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2109 self.assertEqual('Windows1251', DoPut(_REMOTE, '/tools/default-encoding', 'Windows1251')) |
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diff
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2110 self.assertEqual('Windows1251', DoGet(_REMOTE, '/tools/default-encoding')) |
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|
2111 |
22 | 2112 f = UploadInstance(_REMOTE, 'Issue32.dcm')['ID'] |
2113 tags = DoGet(_REMOTE, '/instances/%s/tags?simplify' % f) | |
2114 self.assertEqual(u'Рентгенография', tags['SeriesDescription']) | |
2115 self.assertEqual(u'Таз', tags['BodyPartExamined']) | |
2116 self.assertEqual(u'Прямая', tags['ViewPosition']) | |
2117 | |
92
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diff
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|
2118 # Replay the same test using Latin1 as default encoding: This must fail |
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test_findscu_encoding
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diff
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|
2119 self.assertEqual('Latin1', DoPut(_REMOTE, '/tools/default-encoding', 'Latin1')) |
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2120 |
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2121 DoDelete(_REMOTE, '/instances/%s' % f) |
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2122 f = UploadInstance(_REMOTE, 'Issue32.dcm')['ID'] |
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|
2123 tags = DoGet(_REMOTE, '/instances/%s/tags?simplify' % f) |
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diff
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|
2124 self.assertNotEqual(u'Рентгенография', tags['SeriesDescription']) |
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test_findscu_encoding
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diff
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|
2125 |
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|
2126 |
22 | 2127 def test_encodings(self): |
23 | 2128 # Latin-1 (ISO_IR 100) |
22 | 2129 brainix = UploadInstance(_REMOTE, 'Brainix/Epi/IM-0001-0001.dcm')['ID'] |
2130 tags = DoGet(_REMOTE, '/instances/%s/tags?simplify' % brainix) | |
2131 self.assertEqual(u'IRM cérébrale, neuro-crâne', tags['StudyDescription']) | |
23 | 2132 |
2133 # Latin-2 (ISO_IR 101) | |
2134 a = UploadInstance(_REMOTE, 'MarekLatin2.dcm')['ID'] | |
2135 i = DoGet(_REMOTE, '/instances/%s/simplified-tags' % a) | |
2136 # dcm2xml MarekLatin2.dcm | iconv -f latin2 -t utf-8 | xmllint --format - | |
2137 self.assertEqual('Imię i Nazwisko osoby opisującej', | |
2138 i['ContentSequence'][4]['ConceptNameCodeSequence'][0]['CodeMeaning'].encode('utf-8')) | |
2139 | |
26
040f6ef1394a
test_storescu_custom_aet
Sebastien Jodogne <s.jodogne@gmail.com>
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diff
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|
2140 |
040f6ef1394a
test_storescu_custom_aet
Sebastien Jodogne <s.jodogne@gmail.com>
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diff
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|
2141 def test_storescu_custom_aet(self): |
040f6ef1394a
test_storescu_custom_aet
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parents:
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diff
changeset
|
2142 # This tests a feature introduced in Orthanc 0.9.1: "Custom |
040f6ef1394a
test_storescu_custom_aet
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parents:
23
diff
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|
2143 # setting of the local AET during C-Store SCU (both in Lua and |
040f6ef1394a
test_storescu_custom_aet
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parents:
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diff
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|
2144 # in the REST API)." |
040f6ef1394a
test_storescu_custom_aet
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parents:
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diff
changeset
|
2145 # https://groups.google.com/forum/#!msg/orthanc-users/o5qMULformU/wZjW2iSaMcAJ |
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test_storescu_custom_aet
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diff
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|
2146 |
040f6ef1394a
test_storescu_custom_aet
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parents:
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diff
changeset
|
2147 self.assertEqual(0, len(DoGet(_LOCAL, '/patients'))) |
040f6ef1394a
test_storescu_custom_aet
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parents:
23
diff
changeset
|
2148 |
040f6ef1394a
test_storescu_custom_aet
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parents:
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diff
changeset
|
2149 a = UploadInstance(_REMOTE, 'Knee/T1/IM-0001-0001.dcm') |
040f6ef1394a
test_storescu_custom_aet
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parents:
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diff
changeset
|
2150 b = UploadInstance(_REMOTE, 'Knee/T1/IM-0001-0002.dcm') |
040f6ef1394a
test_storescu_custom_aet
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parents:
23
diff
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|
2151 c = UploadInstance(_REMOTE, 'Knee/T1/IM-0001-0003.dcm') |
040f6ef1394a
test_storescu_custom_aet
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parents:
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diff
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|
2152 |
040f6ef1394a
test_storescu_custom_aet
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parents:
23
diff
changeset
|
2153 j = DoPost(_REMOTE, '/modalities/orthanctest/store', { |
040f6ef1394a
test_storescu_custom_aet
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parents:
23
diff
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|
2154 'LocalAet' : 'YOP', |
040f6ef1394a
test_storescu_custom_aet
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parents:
23
diff
changeset
|
2155 'Resources' : [ a['ID'], b['ID'] ] |
040f6ef1394a
test_storescu_custom_aet
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parents:
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diff
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|
2156 }) |
040f6ef1394a
test_storescu_custom_aet
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parents:
23
diff
changeset
|
2157 |
040f6ef1394a
test_storescu_custom_aet
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parents:
23
diff
changeset
|
2158 self.assertEqual(2, len(DoGet(_LOCAL, '/instances'))) |
040f6ef1394a
test_storescu_custom_aet
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parents:
23
diff
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|
2159 self.assertEqual('YOP', DoGet(_LOCAL, '/instances/%s/metadata/RemoteAET' % a['ID'])) |
040f6ef1394a
test_storescu_custom_aet
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parents:
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diff
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|
2160 |
040f6ef1394a
test_storescu_custom_aet
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parents:
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diff
changeset
|
2161 DropOrthanc(_LOCAL) |
040f6ef1394a
test_storescu_custom_aet
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diff
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|
2162 self.assertEqual(0, len(DoGet(_LOCAL, '/instances'))) |
040f6ef1394a
test_storescu_custom_aet
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diff
changeset
|
2163 |
040f6ef1394a
test_storescu_custom_aet
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parents:
23
diff
changeset
|
2164 j = DoPost(_REMOTE, '/modalities/orthanctest/store', { |
040f6ef1394a
test_storescu_custom_aet
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parents:
23
diff
changeset
|
2165 'Resources' : [ c['ID'] ] |
040f6ef1394a
test_storescu_custom_aet
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parents:
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diff
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|
2166 }) |
040f6ef1394a
test_storescu_custom_aet
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parents:
23
diff
changeset
|
2167 |
040f6ef1394a
test_storescu_custom_aet
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parents:
23
diff
changeset
|
2168 self.assertEqual(1, len(DoGet(_LOCAL, '/instances'))) |
040f6ef1394a
test_storescu_custom_aet
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23
diff
changeset
|
2169 self.assertEqual('ORTHANC', DoGet(_LOCAL, '/instances/%s/metadata/RemoteAET' % c['ID'])) |
040f6ef1394a
test_storescu_custom_aet
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diff
changeset
|
2170 |
040f6ef1394a
test_storescu_custom_aet
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23
diff
changeset
|
2171 DropOrthanc(_REMOTE) |
040f6ef1394a
test_storescu_custom_aet
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parents:
23
diff
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|
2172 DropOrthanc(_LOCAL) |
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test_storescu_custom_aet
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parents:
23
diff
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|
2173 |
040f6ef1394a
test_storescu_custom_aet
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
23
diff
changeset
|
2174 InstallLuaScript('Lua/AutoroutingChangeAet.lua') |
040f6ef1394a
test_storescu_custom_aet
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
23
diff
changeset
|
2175 DoPost(_REMOTE, '/tools/execute-script', 'aet = "HELLO"', 'application/lua') |
040f6ef1394a
test_storescu_custom_aet
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
23
diff
changeset
|
2176 |
040f6ef1394a
test_storescu_custom_aet
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
23
diff
changeset
|
2177 self.assertEqual(0, len(DoGet(_LOCAL, '/instances'))) |
040f6ef1394a
test_storescu_custom_aet
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parents:
23
diff
changeset
|
2178 UploadInstance(_REMOTE, 'Knee/T1/IM-0001-0001.dcm') |
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test_storescu_custom_aet
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parents:
23
diff
changeset
|
2179 WaitEmpty(_REMOTE) |
040f6ef1394a
test_storescu_custom_aet
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23
diff
changeset
|
2180 self.assertEqual(1, len(DoGet(_LOCAL, '/instances'))) |
040f6ef1394a
test_storescu_custom_aet
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parents:
23
diff
changeset
|
2181 self.assertEqual('HELLO', DoGet(_LOCAL, '/instances/%s/metadata/RemoteAET' % a['ID'])) |
040f6ef1394a
test_storescu_custom_aet
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
23
diff
changeset
|
2182 |
040f6ef1394a
test_storescu_custom_aet
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parents:
23
diff
changeset
|
2183 DoPost(_REMOTE, '/tools/execute-script', 'aet = nill', 'application/lua') |
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test_storescu_custom_aet
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parents:
23
diff
changeset
|
2184 UploadInstance(_REMOTE, 'Knee/T1/IM-0001-0002.dcm') |
040f6ef1394a
test_storescu_custom_aet
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parents:
23
diff
changeset
|
2185 WaitEmpty(_REMOTE) |
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test_storescu_custom_aet
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parents:
23
diff
changeset
|
2186 self.assertEqual(2, len(DoGet(_LOCAL, '/instances'))) |
040f6ef1394a
test_storescu_custom_aet
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
23
diff
changeset
|
2187 self.assertEqual('ORTHANC', DoGet(_LOCAL, '/instances/%s/metadata/RemoteAET' % b['ID'])) |
34
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diff
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|
2188 |
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diff
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|
2189 def test_resources_since_limit(self): |
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diff
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|
2190 # Upload 16 instances |
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|
2191 for i in range(4): |
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diff
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|
2192 UploadInstance(_REMOTE, 'Brainix/Flair/IM-0001-000%d.dcm' % (i + 1)) |
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test limit and since arguments while retrieving DICOM resources in the REST API
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|
2193 UploadInstance(_REMOTE, 'Brainix/Epi/IM-0001-000%d.dcm' % (i + 1)) |
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changeset
|
2194 UploadInstance(_REMOTE, 'Knee/T1/IM-0001-000%d.dcm' % (i + 1)) |
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diff
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|
2195 UploadInstance(_REMOTE, 'Knee/T2/IM-0001-000%d.dcm' % (i + 1)) |
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|
2196 |
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diff
changeset
|
2197 self.assertEqual(2, len(DoGet(_REMOTE, '/patients'))) |
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2198 self.assertEqual(2, len(DoGet(_REMOTE, '/studies'))) |
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|
2199 self.assertEqual(4, len(DoGet(_REMOTE, '/series'))) |
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|
2200 self.assertEqual(16, len(DoGet(_REMOTE, '/instances'))) |
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|
2201 |
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|
2202 self.assertRaises(Exception, lambda: DoGet(_REMOTE, '/patients&since=10' % i)) |
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|
2203 self.assertRaises(Exception, lambda: DoGet(_REMOTE, '/patients&limit=10' % i)) |
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2204 |
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|
2205 self.assertEqual(0, len(DoGet(_REMOTE, '/patients?since=0&limit=0'))) |
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|
2206 self.assertEqual(2, len(DoGet(_REMOTE, '/patients?since=0&limit=100'))) |
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|
2207 self.assertEqual(2, len(DoGet(_REMOTE, '/studies?since=0&limit=100'))) |
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2208 self.assertEqual(4, len(DoGet(_REMOTE, '/series?since=0&limit=100'))) |
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|
2209 self.assertEqual(16, len(DoGet(_REMOTE, '/instances?since=0&limit=100'))) |
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|
2210 self.assertEqual(1, len(DoGet(_REMOTE, '/patients?since=1&limit=100'))) |
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|
2211 self.assertEqual(0, len(DoGet(_REMOTE, '/patients?since=2&limit=100'))) |
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|
2212 self.assertEqual(0, len(DoGet(_REMOTE, '/patients?since=3&limit=100'))) |
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2213 self.assertEqual(1, len(DoGet(_REMOTE, '/studies?since=1&limit=100'))) |
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|
2214 self.assertEqual(3, len(DoGet(_REMOTE, '/series?since=1&limit=100'))) |
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|
2215 self.assertEqual(2, len(DoGet(_REMOTE, '/series?since=2&limit=100'))) |
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2216 self.assertEqual(1, len(DoGet(_REMOTE, '/series?since=3&limit=100'))) |
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|
2217 self.assertEqual(0, len(DoGet(_REMOTE, '/series?since=4&limit=100'))) |
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|
2218 self.assertEqual(0, len(DoGet(_REMOTE, '/series?since=100&limit=100'))) |
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2219 self.assertEqual(15, len(DoGet(_REMOTE, '/instances?since=1&limit=100'))) |
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2220 |
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diff
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2221 for limit in [ 1, 2, 3, 7, 16, 17 ]: |
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2222 s = {} |
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2223 since = 0 |
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diff
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|
2224 while True: |
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diff
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2225 t = DoGet(_REMOTE, '/instances?since=%d&limit=%d' % (since, limit)) |
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|
2226 if len(t) == 0: |
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|
2227 break |
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2228 |
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2229 since += len(t) |
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|
2230 for i in t: |
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|
2231 s[i] = None |
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2232 |
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2233 self.assertEqual(16, len(s)) |
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2234 for instance in DoGet(_REMOTE, '/instances'): |
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2235 self.assertTrue(instance in s) |
36 | 2236 |
2237 | |
2238 def test_create_pdf(self): | |
2239 # Upload 4 instances | |
2240 brainixInstance = UploadInstance(_REMOTE, 'Brainix/Flair/IM-0001-0001.dcm')['ID'] | |
2241 UploadInstance(_REMOTE, 'Brainix/Epi/IM-0001-0001.dcm') | |
2242 UploadInstance(_REMOTE, 'Knee/T1/IM-0001-0001.dcm') | |
2243 UploadInstance(_REMOTE, 'Knee/T2/IM-0001-0001.dcm') | |
2244 | |
2245 brainixPatient = '16738bc3-e47ed42a-43ce044c-a3414a45-cb069bd0' | |
2246 brainixStudy = '27f7126f-4f66fb14-03f4081b-f9341db2-53925988' | |
2247 brainixEpi = '2ac1316d-3e432022-62eabff2-c59f5475-9b1ac3f8' | |
2248 | |
2249 with open(GetDatabasePath('HelloWorld.pdf'), 'rb') as f: | |
2250 pdf = f.read() | |
2251 | |
2252 i = DoPost(_REMOTE, '/tools/create-dicom', | |
2253 json.dumps({ | |
2254 'Tags' : { | |
2255 'PatientName' : 'Jodogne', | |
2256 'Modality' : 'CT', | |
2257 }, | |
2258 'Content' : 'data:application/pdf;base64,' + base64.b64encode(pdf) | |
2259 })) | |
2260 | |
2261 self.assertEqual('Jodogne', DoGet(_REMOTE, '/instances/%s/content/PatientName' % i['ID']).strip()) | |
2262 self.assertEqual('OT', DoGet(_REMOTE, '/instances/%s/content/Modality' % i['ID']).strip()) | |
2263 | |
2264 b = DoGet(_REMOTE, '/instances/%s/content/0042-0011' % i['ID']) | |
2265 self.assertEqual(len(b), len(pdf) + 1) | |
2266 self.assertEqual(ComputeMD5(b), ComputeMD5(pdf + '\0')) | |
2267 | |
2268 self.assertRaises(Exception, lambda: DoPost(_REMOTE, '/tools/create-dicom', | |
2269 json.dumps({ | |
2270 'Parent' : brainixPatient, | |
2271 'Tags' : { | |
2272 'PatientName' : 'Jodogne', | |
2273 } | |
2274 }))) | |
2275 | |
2276 i = DoPost(_REMOTE, '/tools/create-dicom', | |
2277 json.dumps({ | |
2278 'Parent' : brainixPatient, | |
2279 'Tags' : { 'StudyDescription' : 'PDF^Patient' }, | |
2280 'Content' : 'data:application/pdf;base64,' + base64.b64encode(pdf) | |
2281 })) | |
2282 | |
2283 self.assertEqual(brainixPatient, DoGet(_REMOTE, '/instances/%s/patient' % i['ID'])['ID']) | |
2284 | |
2285 i = DoPost(_REMOTE, '/tools/create-dicom', | |
2286 json.dumps({ | |
2287 'Parent' : brainixStudy, | |
2288 'Tags' : { 'SeriesDescription' : 'PDF^Study' }, | |
2289 'Content' : 'data:application/pdf;base64,' + base64.b64encode(pdf) | |
2290 })) | |
2291 | |
2292 self.assertEqual(brainixStudy, DoGet(_REMOTE, '/instances/%s/study' % i['ID'])['ID']) | |
2293 | |
2294 i = DoPost(_REMOTE, '/tools/create-dicom', | |
2295 json.dumps({ | |
2296 'Parent' : brainixEpi, | |
37 | 2297 'Tags' : { 'SpecificCharacterSet' : 'ISO_IR 13' }, |
36 | 2298 'Content' : 'data:application/pdf;base64,' + base64.b64encode(pdf) |
2299 })) | |
2300 | |
2301 self.assertEqual(brainixEpi, DoGet(_REMOTE, '/instances/%s/series' % i['ID'])['ID']) | |
2302 | |
2303 b = DoGet(_REMOTE, '/instances/%s/pdf' % i['ID']) | |
2304 self.assertEqual(len(b), len(pdf)) | |
2305 self.assertEqual(ComputeMD5(b), ComputeMD5(pdf)) | |
2306 | |
2307 self.assertRaises(Exception, lambda: DoGet(_REMOTE, '/instances/%s/pdf' % brainixInstance)) | |
38 | 2308 |
2309 | |
2310 def test_create_series(self): | |
2311 i = DoPost(_REMOTE, '/tools/create-dicom', | |
2312 json.dumps({ | |
2313 'Tags' : { | |
40 | 2314 'SpecificCharacterSet' : 'ISO_IR 100', |
2315 'PatientName' : 'Sébastien Jodogne', | |
38 | 2316 'Modality' : 'CT', |
2317 }, | |
2318 'Content' : [ | |
40 | 2319 { |
2320 'Content': 'data:image/png;base64,iVBORw0KGgoAAAANSUhEUgAAAAUAAAAFCAYAAACNbyblAAAAHElEQVQI12P4//8/w38GIAXDIBKE0DHxgljNBAAO9TXL0Y4OHwAAAABJRU5ErkJggg==', # red dot in RGBA | |
2321 'Tags' : { 'ImageComments' : 'Tutu' } | |
2322 }, | |
38 | 2323 'data:image/png;base64,iVBORw0KGgoAAAANSUhEUgAAABAAAAAQCAYAAAAf8/9hAAAAoUlEQVQ4jZ2SWw3EIBREjwUsYAELa2EtoAULFUCyXAtroRZqoRbox254BdLC/DZnZjoXWJFgCDg8egW2CBEhEnDzyRk+Ecxz2KP/0AL8S99T+jQccAVs22qKwAuPuq0uyNg9cPLh3am+pe/dkHLZtqJHj6vXJrZ7nvzvxxgemXgUwnGfXqpee09mUwp8m022OYP6bLF7mVuVe0y/umxinsAXRd9z0k1ubWsAAAAASUVORK5CYII=', |
2324 ] | |
2325 })) | |
2326 | |
2327 s = DoGet(_REMOTE, i['Path']) | |
2328 self.assertEqual('Series', s['Type']) | |
2329 self.assertEqual(s['ID'], i['ID']) | |
2330 self.assertEqual(2, len(s['Instances'])) | |
39 | 2331 self.assertEqual(2, s['ExpectedNumberOfInstances']) |
2332 self.assertEqual('Complete', s['Status']) | |
40 | 2333 |
2334 a = DoGet(_REMOTE, '/instances/%s/tags?simplify' % s['Instances'][0]) | |
2335 b = DoGet(_REMOTE, '/instances/%s/tags?simplify' % s['Instances'][1]) | |
2336 self.assertTrue('ImageComments' in a or 'ImageComments' in b) | |
2337 if 'ImageComments' in a: | |
2338 self.assertEqual('Tutu', a['ImageComments']) | |
2339 else: | |
2340 self.assertEqual('Tutu', b['ImageComments']) | |
2341 | |
2342 patient = DoGet(_REMOTE, '/instances/%s/patient' % s['Instances'][0]) | |
2343 self.assertEqual(patient['MainDicomTags']['PatientName'].encode('utf-8'), | |
2344 'Sébastien Jodogne') | |
47 | 2345 |
2346 | |
2347 def test_create_binary(self): | |
2348 binary = ''.join(map(chr, range(256))) | |
2349 encoded = 'data:application/octet-stream;base64,' + base64.b64encode(binary) | |
2350 tags = { | |
2351 'PatientName' : 'Jodogne', | |
2352 '8899-8899' : encoded | |
2353 } | |
2354 | |
2355 i = DoPost(_REMOTE, '/tools/create-dicom', | |
2356 json.dumps({ | |
2357 'Tags' : tags | |
2358 })) | |
2359 | |
2360 self.assertEqual('Jodogne', DoGet(_REMOTE, '/instances/%s/content/PatientName' % i['ID']).strip()) | |
2361 self.assertEqual(binary, DoGet(_REMOTE, '/instances/%s/content/8899-8899' % i['ID']).strip()) | |
2362 | |
2363 i = DoPost(_REMOTE, '/tools/create-dicom', | |
2364 json.dumps({ | |
2365 'InterpretBinaryTags' : False, | |
2366 'Tags' : tags | |
2367 })) | |
2368 | |
2369 self.assertEqual('Jodogne', DoGet(_REMOTE, '/instances/%s/content/PatientName' % i['ID']).strip()) | |
2370 self.assertEqual(encoded, DoGet(_REMOTE, '/instances/%s/content/8899-8899' % i['ID'])[0:-1]) | |
48
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2371 |
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|
2372 |
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|
2373 def test_patient_ids_collision(self): |
e4352463ff74
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diff
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|
2374 # Upload 3 instances from 3 different studies, but with the |
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test_patient_ids_collision
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|
2375 # same PatientID |
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|
2376 for i in range(3): |
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|
2377 UploadInstance(_REMOTE, 'PatientIdsCollision/Image%d.dcm' % (i + 1)) |
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|
2378 |
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diff
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|
2379 a = DoPost(_REMOTE, '/tools/find', { 'Level' : 'Patient', |
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|
2380 'Query' : { 'PatientName' : '*' }}) |
e4352463ff74
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changeset
|
2381 self.assertEqual(1, len(a)) |
e4352463ff74
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diff
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|
2382 self.assertEqual('COMMON', DoGet(_REMOTE, '/patients/%s' % a[0]) ['MainDicomTags']['PatientID']) |
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|
2383 |
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diff
changeset
|
2384 a = DoPost(_REMOTE, '/tools/find', { 'Level' : 'Study', |
e4352463ff74
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diff
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|
2385 'CaseSensitive' : True, |
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diff
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|
2386 'Query' : { 'PatientName' : 'FOO\\HELLO' }}) |
e4352463ff74
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|
2387 self.assertEqual(2, len(a)) |
e4352463ff74
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|
2388 |
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changeset
|
2389 a = DoPost(_REMOTE, '/tools/find', { 'Level' : 'Series', |
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|
2390 'CaseSensitive' : False, |
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|
2391 'Query' : { 'PatientName' : 'Foo' }}) |
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2392 self.assertEqual(1, len(a)) |
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2393 self.assertEqual('FOO^SERIES', DoGet(_REMOTE, '/series/%s/study' % a[0]) ['MainDicomTags']['StudyDescription']) |
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2394 self.assertEqual('FOO', DoGet(_REMOTE, '/series/%s/study' % a[0]) ['PatientMainDicomTags']['PatientName']) |
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2395 self.assertEqual('COMMON', DoGet(_REMOTE, '/series/%s/study' % a[0]) ['PatientMainDicomTags']['PatientID']) |
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2396 |
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|
2397 a = DoPost(_REMOTE, '/tools/find', { 'Level' : 'Study', |
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2398 'Query' : { 'PatientName' : '*' }}) |
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diff
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2399 self.assertEqual(3, len(a)) |
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2400 d = map(lambda x: DoGet(_REMOTE, '/studies/%s' % x) ['MainDicomTags']['StudyDescription'], a) |
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2401 self.assertTrue('FOO^SERIES' in d) |
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2402 self.assertTrue('HELLO^SERIES' in d) |
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2403 self.assertTrue('WORLD^SERIES' in d) |
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2404 |
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2405 d = map(lambda x: DoGet(_REMOTE, '/studies/%s' % x) ['PatientMainDicomTags']['PatientID'], a) |
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2406 self.assertEqual(1, len(set(d))) |
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2407 self.assertEqual('COMMON', d[0]) |
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2408 |
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2409 for i in a: |
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2410 d = DoGet(_REMOTE, '/studies/%s' % i) ['MainDicomTags']['StudyDescription'] |
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2411 p = DoGet(_REMOTE, '/studies/%s' % i) ['PatientMainDicomTags']['PatientName'] |
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2412 self.assertEqual('%s^SERIES' % p, d) |
49
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2413 |
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2414 |
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|
2415 def test_bitbucket_issue_4(self): |
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|
2416 UploadInstance(_REMOTE, 'Brainix/Epi/IM-0001-0001.dcm') |
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2417 UploadInstance(_REMOTE, 'Brainix/Epi/IM-0001-0002.dcm') |
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2418 UploadInstance(_REMOTE, 'Brainix/Epi/IM-0001-0003.dcm') |
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2419 UploadInstance(_REMOTE, 'Formats/Jpeg.dcm') |
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2420 UploadInstance(_REMOTE, 'Formats/JpegLossless.dcm') |
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2421 UploadInstance(_REMOTE, 'Formats/Rle.dcm') |
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2422 |
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|
2423 self.assertEqual(0, len(DoGet(_LOCAL, '/instances'))) |
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2424 self.assertEqual(6, len(DoGet(_REMOTE, '/instances'))) |
e7f9b8199545
test_bitbucket_issue_4
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
48
diff
changeset
|
2425 |
e7f9b8199545
test_bitbucket_issue_4
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
48
diff
changeset
|
2426 p = DoGet(_REMOTE, '/patients') |
e7f9b8199545
test_bitbucket_issue_4
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
48
diff
changeset
|
2427 self.assertEqual(2, len(p)) |
e7f9b8199545
test_bitbucket_issue_4
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
48
diff
changeset
|
2428 i1 = map(lambda x: x['ID'], DoGet(_REMOTE, '/patients/%s/instances' % p[0])) |
e7f9b8199545
test_bitbucket_issue_4
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
48
diff
changeset
|
2429 i2 = map(lambda x: x['ID'], DoGet(_REMOTE, '/patients/%s/instances' % p[1])) |
e7f9b8199545
test_bitbucket_issue_4
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
48
diff
changeset
|
2430 self.assertEqual(3, len(i1)) |
e7f9b8199545
test_bitbucket_issue_4
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
48
diff
changeset
|
2431 self.assertEqual(3, len(i2)) |
e7f9b8199545
test_bitbucket_issue_4
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
48
diff
changeset
|
2432 |
e7f9b8199545
test_bitbucket_issue_4
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
48
diff
changeset
|
2433 j = DoPost(_REMOTE, '/modalities/orthanctest/store', i2[0:1] + i1 + i2[1:3]) |
e7f9b8199545
test_bitbucket_issue_4
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
48
diff
changeset
|
2434 |
e7f9b8199545
test_bitbucket_issue_4
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
48
diff
changeset
|
2435 self.assertEqual(6, len(DoGet(_LOCAL, '/instances'))) |
50
8de63d56cf11
test_create_sequence
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
49
diff
changeset
|
2436 |
8de63d56cf11
test_create_sequence
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
49
diff
changeset
|
2437 |
8de63d56cf11
test_create_sequence
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
49
diff
changeset
|
2438 def test_create_sequence(self): |
8de63d56cf11
test_create_sequence
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
49
diff
changeset
|
2439 i = DoPost(_REMOTE, '/tools/create-dicom', |
8de63d56cf11
test_create_sequence
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
49
diff
changeset
|
2440 json.dumps({ |
8de63d56cf11
test_create_sequence
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
49
diff
changeset
|
2441 'Tags' : { |
8de63d56cf11
test_create_sequence
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
49
diff
changeset
|
2442 'SpecificCharacterSet': 'ISO_IR 100', # Encode using Latin1 |
8de63d56cf11
test_create_sequence
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
49
diff
changeset
|
2443 'PatientName': 'Jodogne^', |
51
264a20a0276d
test_modify_sequence
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
50
diff
changeset
|
2444 'ReferencedStudySequence': GenerateTestSequence(), |
50
8de63d56cf11
test_create_sequence
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
49
diff
changeset
|
2445 } |
8de63d56cf11
test_create_sequence
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
49
diff
changeset
|
2446 }))['ID'] |
8de63d56cf11
test_create_sequence
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
49
diff
changeset
|
2447 |
8de63d56cf11
test_create_sequence
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
49
diff
changeset
|
2448 self.assertEqual('Jodogne^', DoGet(_REMOTE, '/instances/%s/content/PatientName' % i)) |
8de63d56cf11
test_create_sequence
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
49
diff
changeset
|
2449 self.assertEqual('Hello^', DoGet(_REMOTE, '/instances/%s/content/ReferencedStudySequence/0/StudyDescription' % i)) |
8de63d56cf11
test_create_sequence
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
49
diff
changeset
|
2450 self.assertEqual('Toto', DoGet(_REMOTE, '/instances/%s/content/ReferencedStudySequence/0/ReferencedStudySequence/0/StudyDescription' % i)) |
8de63d56cf11
test_create_sequence
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
49
diff
changeset
|
2451 self.assertEqual('Tata', DoGet(_REMOTE, '/instances/%s/content/ReferencedStudySequence/0/ReferencedStudySequence/1/StudyDescription' % i)) |
8de63d56cf11
test_create_sequence
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
49
diff
changeset
|
2452 self.assertEqual(u'Sébastien^'.encode('latin-1'), |
8de63d56cf11
test_create_sequence
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
49
diff
changeset
|
2453 DoGet(_REMOTE, '/instances/%s/content/ReferencedStudySequence/1/StudyDescription' % i)) |
51
264a20a0276d
test_modify_sequence
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
50
diff
changeset
|
2454 |
264a20a0276d
test_modify_sequence
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
50
diff
changeset
|
2455 |
264a20a0276d
test_modify_sequence
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
50
diff
changeset
|
2456 def test_modify_sequence(self): |
264a20a0276d
test_modify_sequence
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
50
diff
changeset
|
2457 i = UploadInstance(_REMOTE, 'PrivateTags.dcm')['ID'] |
264a20a0276d
test_modify_sequence
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
50
diff
changeset
|
2458 self.assertRaises(Exception, lambda: DoGet(_REMOTE, '/instances/%s/content/ReferencedStudySequence' % i)) |
264a20a0276d
test_modify_sequence
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
50
diff
changeset
|
2459 |
264a20a0276d
test_modify_sequence
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
50
diff
changeset
|
2460 j = DoPost(_REMOTE, '/instances/%s/modify' % i, |
264a20a0276d
test_modify_sequence
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
50
diff
changeset
|
2461 json.dumps({ |
264a20a0276d
test_modify_sequence
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
50
diff
changeset
|
2462 "Replace" : { |
264a20a0276d
test_modify_sequence
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
50
diff
changeset
|
2463 "PatientName" : "hello", |
264a20a0276d
test_modify_sequence
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
50
diff
changeset
|
2464 'ReferencedStudySequence': GenerateTestSequence(), |
264a20a0276d
test_modify_sequence
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
50
diff
changeset
|
2465 }, |
264a20a0276d
test_modify_sequence
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
50
diff
changeset
|
2466 }), |
264a20a0276d
test_modify_sequence
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
50
diff
changeset
|
2467 'application/json') |
264a20a0276d
test_modify_sequence
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
50
diff
changeset
|
2468 j = DoPost(_REMOTE, '/instances', j, 'application/dicom')['ID'] |
264a20a0276d
test_modify_sequence
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
50
diff
changeset
|
2469 DoDelete(_REMOTE, '/instances/%s' % i) |
264a20a0276d
test_modify_sequence
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
50
diff
changeset
|
2470 |
52 | 2471 self.assertEqual(2, len(DoGet(_REMOTE, '/instances/%s/content/ReferencedStudySequence' % j))) |
2472 | |
2473 | |
2474 def test_compression(self): | |
2475 i = UploadInstance(_REMOTE, 'DummyCT.dcm')['ID'] | |
2476 | |
2477 data = DoGetRaw(_REMOTE, '/instances/%s/attachments/dicom-as-json/data' % i)[1] | |
2478 | |
2479 # "StorageCompression" is enabled in the Orthanc to be tested, | |
2480 # uncompress the data before running the test | |
2481 if DoGet(_REMOTE, '/instances/%s/attachments/dicom-as-json/is-compressed' % i) != 0: | |
2482 DoPost(_REMOTE, '/instances/%s/attachments/dicom-as-json/uncompress' % i) | |
2483 | |
2484 cs = DoGet(_REMOTE, '/statistics')['TotalDiskSize'] | |
2485 us = DoGet(_REMOTE, '/statistics')['TotalUncompressedSize'] | |
2486 size = DoGet(_REMOTE, '/instances/%s/attachments/dicom-as-json/size' % i) | |
2487 md5 = DoGet(_REMOTE, '/instances/%s/attachments/dicom-as-json/md5' % i) | |
2488 self.assertEqual(data, DoGetRaw(_REMOTE, '/instances/%s/attachments/dicom-as-json/compressed-data' % i)[1]) | |
2489 self.assertEqual(md5, DoGet(_REMOTE, '/instances/%s/attachments/dicom-as-json/compressed-md5' % i)) | |
2490 self.assertEqual(size, DoGet(_REMOTE, '/instances/%s/attachments/dicom-as-json/compressed-size' % i)) | |
2491 | |
2492 ops = DoGet(_REMOTE, '/instances/%s/attachments/dicom-as-json' % i) | |
2493 self.assertTrue('compress' in ops) | |
2494 self.assertTrue('uncompress' in ops) | |
2495 self.assertTrue('is-compressed' in ops) | |
2496 self.assertEqual(0, DoGet(_REMOTE, '/instances/%s/attachments/dicom-as-json/is-compressed' % i)) | |
2497 DoPost(_REMOTE, '/instances/%s/attachments/dicom-as-json/verify-md5' % i) | |
2498 | |
2499 DoPost(_REMOTE, '/instances/%s/attachments/dicom-as-json/compress' % i) | |
2500 DoPost(_REMOTE, '/instances/%s/attachments/dicom-as-json/verify-md5' % i) | |
2501 self.assertEqual(1, DoGet(_REMOTE, '/instances/%s/attachments/dicom-as-json/is-compressed' % i)) | |
2502 self.assertLess(cs, DoGet(_REMOTE, '/statistics')['TotalDiskSize']) | |
2503 self.assertEqual(us, DoGet(_REMOTE, '/statistics')['TotalUncompressedSize']) | |
2504 self.assertGreater(len(data), len(DoGetRaw(_REMOTE, '/instances/%s/attachments/dicom-as-json/compressed-data' % i)[1])) | |
2505 self.assertGreater(size, DoGet(_REMOTE, '/instances/%s/attachments/dicom-as-json/compressed-size' % i)) | |
2506 self.assertEqual(size, DoGet(_REMOTE, '/instances/%s/attachments/dicom-as-json/size' % i)) | |
2507 self.assertEqual(md5, DoGet(_REMOTE, '/instances/%s/attachments/dicom-as-json/md5' % i)) | |
2508 self.assertNotEqual(md5, DoGet(_REMOTE, '/instances/%s/attachments/dicom-as-json/compressed-md5' % i)) | |
2509 | |
2510 DoPost(_REMOTE, '/instances/%s/attachments/dicom-as-json/uncompress' % i) | |
2511 DoPost(_REMOTE, '/instances/%s/attachments/dicom-as-json/verify-md5' % i) | |
2512 self.assertEqual(0, DoGet(_REMOTE, '/instances/%s/attachments/dicom-as-json/is-compressed' % i)) | |
2513 self.assertEqual(data, DoGetRaw(_REMOTE, '/instances/%s/attachments/dicom-as-json/compressed-data' % i)[1]) | |
2514 self.assertEqual(size, DoGet(_REMOTE, '/instances/%s/attachments/dicom-as-json/compressed-size' % i)) | |
2515 self.assertEqual(size, DoGet(_REMOTE, '/instances/%s/attachments/dicom-as-json/size' % i)) | |
2516 self.assertEqual(md5, DoGet(_REMOTE, '/instances/%s/attachments/dicom-as-json/md5' % i)) | |
2517 self.assertEqual(md5, DoGet(_REMOTE, '/instances/%s/attachments/dicom-as-json/compressed-md5' % i)) | |
2518 self.assertEqual(cs, DoGet(_REMOTE, '/statistics')['TotalDiskSize']) | |
2519 self.assertEqual(us, DoGet(_REMOTE, '/statistics')['TotalUncompressedSize']) | |
53 | 2520 |
2521 | |
2522 def test_ordered_slices(self): | |
2523 i = UploadInstance(_REMOTE, 'Multiframe.dcm')['ID'] | |
2524 s = DoGet(_REMOTE, '/instances/%s' % i)['ParentSeries'] | |
2525 o = DoGet(_REMOTE, '/series/%s/ordered-slices' % s) | |
2526 self.assertEqual('Sequence', o['Type']) | |
2527 self.assertEqual(1, len(o['Dicom'])) | |
2528 self.assertEqual('/instances/9e05eb0a-18b6268c-e0d36085-8ddab517-3b5aec02/file', o['Dicom'][0]) | |
2529 self.assertEqual(76, len(o['Slices'])) | |
2530 for j in range(76): | |
2531 self.assertEqual('/instances/9e05eb0a-18b6268c-e0d36085-8ddab517-3b5aec02/frames/%d' % j, o['Slices'][j]) | |
2532 | |
68 | 2533 self.assertEqual(1, len(o['SlicesShort'])) |
2534 self.assertEqual('9e05eb0a-18b6268c-e0d36085-8ddab517-3b5aec02', o['SlicesShort'][0][0]) | |
2535 self.assertEqual(0, o['SlicesShort'][0][1]) | |
2536 self.assertEqual(76, o['SlicesShort'][0][2]) | |
2537 | |
53 | 2538 i = UploadInstance(_REMOTE, 'Brainix/Epi/IM-0001-0001.dcm')['ID'] |
2539 j = UploadInstance(_REMOTE, 'Brainix/Epi/IM-0001-0002.dcm')['ID'] | |
2540 k = UploadInstance(_REMOTE, 'Brainix/Epi/IM-0001-0003.dcm')['ID'] | |
2541 s = DoGet(_REMOTE, '/instances/%s' % i)['ParentSeries'] | |
2542 o = DoGet(_REMOTE, '/series/%s/ordered-slices' % s) | |
2543 | |
2544 self.assertEqual('Volume', o['Type']) | |
2545 self.assertEqual(3, len(o['Dicom'])) | |
2546 self.assertEqual(3, len(o['Slices'])) | |
2547 self.assertEqual('/instances/%s/file' % i, o['Dicom'][2]) | |
2548 self.assertEqual('/instances/%s/file' % j, o['Dicom'][1]) | |
2549 self.assertEqual('/instances/%s/file' % k, o['Dicom'][0]) | |
2550 self.assertEqual('/instances/%s/frames/0' % i, o['Slices'][2]) | |
2551 self.assertEqual('/instances/%s/frames/0' % j, o['Slices'][1]) | |
2552 self.assertEqual('/instances/%s/frames/0' % k, o['Slices'][0]) | |
2553 | |
68 | 2554 self.assertEqual(3, len(o['SlicesShort'])) |
2555 self.assertEqual(k, o['SlicesShort'][0][0]) | |
2556 self.assertEqual(0, o['SlicesShort'][0][1]) | |
2557 self.assertEqual(1, o['SlicesShort'][0][2]) | |
2558 self.assertEqual(j, o['SlicesShort'][1][0]) | |
2559 self.assertEqual(0, o['SlicesShort'][1][1]) | |
2560 self.assertEqual(1, o['SlicesShort'][1][2]) | |
2561 self.assertEqual(i, o['SlicesShort'][2][0]) | |
2562 self.assertEqual(0, o['SlicesShort'][2][1]) | |
2563 self.assertEqual(1, o['SlicesShort'][2][2]) | |
2564 | |
53 | 2565 i = UploadInstance(_REMOTE, 'Beaufix/IM-0001-0001.dcm')['ID'] |
2566 j = UploadInstance(_REMOTE, 'Beaufix/IM-0001-0002.dcm')['ID'] | |
2567 s = DoGet(_REMOTE, '/instances/%s' % i)['ParentSeries'] | |
2568 o = DoGet(_REMOTE, '/series/%s/ordered-slices' % s) | |
2569 | |
2570 self.assertEqual('Sequence', o['Type']) | |
2571 self.assertEqual(2, len(o['Dicom'])) | |
2572 self.assertEqual(2, len(o['Slices'])) | |
2573 self.assertEqual('/instances/%s/file' % i, o['Dicom'][0]) | |
2574 self.assertEqual('/instances/%s/file' % j, o['Dicom'][1]) | |
2575 self.assertEqual('/instances/%s/frames/0' % i, o['Slices'][0]) | |
2576 self.assertEqual('/instances/%s/frames/0' % j, o['Slices'][1]) | |
54
c5f8a6b0d85e
test_incoming_movescu_accession
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
53
diff
changeset
|
2577 |
68 | 2578 self.assertEqual(2, len(o['SlicesShort'])) |
2579 self.assertEqual(i, o['SlicesShort'][0][0]) | |
2580 self.assertEqual(0, o['SlicesShort'][0][1]) | |
2581 self.assertEqual(1, o['SlicesShort'][0][2]) | |
2582 self.assertEqual(j, o['SlicesShort'][1][0]) | |
2583 self.assertEqual(0, o['SlicesShort'][1][1]) | |
2584 self.assertEqual(1, o['SlicesShort'][1][2]) | |
2585 | |
2586 | |
54
c5f8a6b0d85e
test_incoming_movescu_accession
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
53
diff
changeset
|
2587 |
c5f8a6b0d85e
test_incoming_movescu_accession
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
53
diff
changeset
|
2588 def test_incoming_movescu_accession(self): |
c5f8a6b0d85e
test_incoming_movescu_accession
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
53
diff
changeset
|
2589 UploadInstance(_REMOTE, 'Knee/T1/IM-0001-0001.dcm') |
c5f8a6b0d85e
test_incoming_movescu_accession
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
53
diff
changeset
|
2590 |
c5f8a6b0d85e
test_incoming_movescu_accession
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
53
diff
changeset
|
2591 self.assertEqual(0, len(DoGet(_LOCAL, '/patients'))) |
c5f8a6b0d85e
test_incoming_movescu_accession
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
53
diff
changeset
|
2592 CallMoveScu([ '--study', '-k', '0008,0052=STUDY', '-k', 'AccessionNumber=nope' ]) |
c5f8a6b0d85e
test_incoming_movescu_accession
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
53
diff
changeset
|
2593 self.assertEqual(0, len(DoGet(_LOCAL, '/patients'))) |
c5f8a6b0d85e
test_incoming_movescu_accession
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
53
diff
changeset
|
2594 CallMoveScu([ '--study', '-k', '0008,0052=PATIENT', '-k', 'AccessionNumber=A10003245599' ]) |
c5f8a6b0d85e
test_incoming_movescu_accession
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
53
diff
changeset
|
2595 self.assertEqual(0, len(DoGet(_LOCAL, '/patients'))) |
c5f8a6b0d85e
test_incoming_movescu_accession
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
53
diff
changeset
|
2596 CallMoveScu([ '--study', '-k', '0008,0052=STUDY', '-k', 'AccessionNumber=A10003245599' ]) |
c5f8a6b0d85e
test_incoming_movescu_accession
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
53
diff
changeset
|
2597 self.assertEqual(1, len(DoGet(_LOCAL, '/patients'))) |
c5f8a6b0d85e
test_incoming_movescu_accession
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
53
diff
changeset
|
2598 |
55 | 2599 |
2600 def test_dicom_to_json(self): | |
2601 i = UploadInstance(_REMOTE, 'PrivateMDNTags.dcm')['ID'] | |
60
cd3c7f70f139
test backward compatibility with Orthanc 0.9.4
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
59
diff
changeset
|
2602 j = UploadInstance(_REMOTE, 'PrivateTags.dcm')['ID'] |
cd3c7f70f139
test backward compatibility with Orthanc 0.9.4
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
59
diff
changeset
|
2603 |
cd3c7f70f139
test backward compatibility with Orthanc 0.9.4
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
59
diff
changeset
|
2604 t = DoGet(_REMOTE, '/instances/%s/tags?simplify' % i) |
cd3c7f70f139
test backward compatibility with Orthanc 0.9.4
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
59
diff
changeset
|
2605 with open(GetDatabasePath('PrivateMDNTagsSimplify.json'), 'r') as f: |
80
8466dbfcb22b
fix test against dcmtk 3.6.1
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
79
diff
changeset
|
2606 self.assertTrue(CompareTags(t, json.loads(f.read()), [ |
8466dbfcb22b
fix test against dcmtk 3.6.1
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
79
diff
changeset
|
2607 ])) |
55 | 2608 |
2609 t = DoGet(_REMOTE, '/instances/%s/tags' % i) | |
2610 with open(GetDatabasePath('PrivateMDNTagsFull.json'), 'r') as f: | |
87
4b24faec842b
test_reconstruct_json2 + test_private_tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
86
diff
changeset
|
2611 self.assertTrue(CompareTags(t, json.loads(f.read()), [ |
4b24faec842b
test_reconstruct_json2 + test_private_tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
86
diff
changeset
|
2612 ])) |
55 | 2613 |
60
cd3c7f70f139
test backward compatibility with Orthanc 0.9.4
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
59
diff
changeset
|
2614 t = DoGet(_REMOTE, '/instances/%s/tags?simplify' % j) |
cd3c7f70f139
test backward compatibility with Orthanc 0.9.4
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
59
diff
changeset
|
2615 with open(GetDatabasePath('PrivateTagsSimplify.json'), 'r') as f: |
80
8466dbfcb22b
fix test against dcmtk 3.6.1
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
79
diff
changeset
|
2616 self.assertTrue(CompareTags(t, json.loads(f.read()), [ |
8466dbfcb22b
fix test against dcmtk 3.6.1
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
79
diff
changeset
|
2617 ])) |
60
cd3c7f70f139
test backward compatibility with Orthanc 0.9.4
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
59
diff
changeset
|
2618 |
cd3c7f70f139
test backward compatibility with Orthanc 0.9.4
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
59
diff
changeset
|
2619 t = DoGet(_REMOTE, '/instances/%s/tags' % j) |
cd3c7f70f139
test backward compatibility with Orthanc 0.9.4
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
59
diff
changeset
|
2620 with open(GetDatabasePath('PrivateTagsFull.json'), 'r') as f: |
cd3c7f70f139
test backward compatibility with Orthanc 0.9.4
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
59
diff
changeset
|
2621 a = json.loads(f.read()) |
65
09fc27e0899a
patch for testing windows builds
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
64
diff
changeset
|
2622 aa = json.dumps(a).replace('2e+022', '2e+22') |
09fc27e0899a
patch for testing windows builds
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
64
diff
changeset
|
2623 tt = json.dumps(t).replace('2e+022', '2e+22') |
09fc27e0899a
patch for testing windows builds
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
64
diff
changeset
|
2624 self.assertEqual(aa, tt) |
57 | 2625 |
2626 | |
2627 def test_batch_archive(self): | |
2628 UploadInstance(_REMOTE, 'Knee/T1/IM-0001-0001.dcm') | |
2629 UploadInstance(_REMOTE, 'Knee/T1/IM-0001-0002.dcm') | |
2630 UploadInstance(_REMOTE, 'Knee/T2/IM-0001-0001.dcm') | |
2631 UploadInstance(_REMOTE, 'Knee/T2/IM-0001-0002.dcm') | |
2632 UploadInstance(_REMOTE, 'Brainix/Epi/IM-0001-0001.dcm') | |
2633 UploadInstance(_REMOTE, 'Brainix/Epi/IM-0001-0002.dcm') | |
2634 UploadInstance(_REMOTE, 'Brainix/Flair/IM-0001-0001.dcm') | |
2635 UploadInstance(_REMOTE, 'Brainix/Flair/IM-0001-0002.dcm') | |
2636 | |
2637 s = DoPost(_REMOTE, '/tools/create-archive', [ ]) | |
2638 z = zipfile.ZipFile(StringIO(s), "r") | |
2639 self.assertEqual(0, len(z.namelist())) | |
2640 | |
2641 # One patient | |
2642 s = DoPost(_REMOTE, '/tools/create-archive', [ 'ca29faea-b6a0e17f-067743a1-8b778011-a48b2a17' ]) | |
2643 z = zipfile.ZipFile(StringIO(s), "r") | |
2644 self.assertEqual(4, len(z.namelist())) | |
2645 | |
2646 # One patient + twice its study + one series from other patient | |
2647 s = DoPost(_REMOTE, '/tools/create-archive', [ | |
2648 'ca29faea-b6a0e17f-067743a1-8b778011-a48b2a17', | |
2649 '0a9b3153-2512774b-2d9580de-1fc3dcf6-3bd83918', | |
2650 '1e2c125c-411b8e86-3f4fe68e-a7584dd3-c6da78f0' | |
2651 ]) | |
2652 z = zipfile.ZipFile(StringIO(s), "r") | |
2653 self.assertEqual(6, len(z.namelist())) | |
2654 | |
2655 # One patient + one series + one instance | |
2656 s = DoPost(_REMOTE, '/tools/create-archive', [ | |
2657 'ca29faea-b6a0e17f-067743a1-8b778011-a48b2a17', | |
2658 '1e2c125c-411b8e86-3f4fe68e-a7584dd3-c6da78f0', | |
2659 '1d429ccb-bdcc78a1-7d129d6a-ba4966ed-fe4dbd87' | |
2660 ]) | |
2661 z = zipfile.ZipFile(StringIO(s), "r") | |
2662 self.assertEqual(7, len(z.namelist())) | |
59
84378ada15ab
test_decode_brainix_as_jpeg
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
58
diff
changeset
|
2663 |
84378ada15ab
test_decode_brainix_as_jpeg
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
58
diff
changeset
|
2664 |
84378ada15ab
test_decode_brainix_as_jpeg
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
58
diff
changeset
|
2665 def test_decode_brainix_as_jpeg(self): |
84378ada15ab
test_decode_brainix_as_jpeg
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
58
diff
changeset
|
2666 i = UploadInstance(_REMOTE, 'Brainix/Epi/IM-0001-0001.dcm')['ID'] |
84378ada15ab
test_decode_brainix_as_jpeg
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
58
diff
changeset
|
2667 |
84378ada15ab
test_decode_brainix_as_jpeg
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
58
diff
changeset
|
2668 j = GetImage(_REMOTE, '/instances/%s/preview' % i) |
84378ada15ab
test_decode_brainix_as_jpeg
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
58
diff
changeset
|
2669 self.assertEqual('PNG', j.format) |
84378ada15ab
test_decode_brainix_as_jpeg
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
58
diff
changeset
|
2670 self.assertEqual(j.size[0], 256) |
84378ada15ab
test_decode_brainix_as_jpeg
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
58
diff
changeset
|
2671 self.assertEqual(j.size[1], 256) |
84378ada15ab
test_decode_brainix_as_jpeg
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
58
diff
changeset
|
2672 |
84378ada15ab
test_decode_brainix_as_jpeg
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
58
diff
changeset
|
2673 j = GetImage(_REMOTE, '/instances/%s/preview' % i, headers = { 'Accept' : '*/*' }) |
84378ada15ab
test_decode_brainix_as_jpeg
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
58
diff
changeset
|
2674 self.assertEqual('PNG', j.format) |
84378ada15ab
test_decode_brainix_as_jpeg
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
58
diff
changeset
|
2675 |
84378ada15ab
test_decode_brainix_as_jpeg
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
58
diff
changeset
|
2676 j = GetImage(_REMOTE, '/instances/%s/preview' % i, headers = { 'Accept' : 'image/*' }) |
84378ada15ab
test_decode_brainix_as_jpeg
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
58
diff
changeset
|
2677 self.assertEqual('PNG', j.format) |
84378ada15ab
test_decode_brainix_as_jpeg
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
58
diff
changeset
|
2678 |
84378ada15ab
test_decode_brainix_as_jpeg
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
58
diff
changeset
|
2679 j = GetImage(_REMOTE, '/instances/%s/preview' % i, headers = { 'Accept' : 'image/png' }) |
84378ada15ab
test_decode_brainix_as_jpeg
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
58
diff
changeset
|
2680 self.assertEqual('PNG', j.format) |
84378ada15ab
test_decode_brainix_as_jpeg
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
58
diff
changeset
|
2681 |
84378ada15ab
test_decode_brainix_as_jpeg
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
58
diff
changeset
|
2682 j = GetImage(_REMOTE, '/instances/%s/preview' % i, headers = { 'Accept' : 'image/jpeg' }) |
84378ada15ab
test_decode_brainix_as_jpeg
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
58
diff
changeset
|
2683 self.assertEqual('JPEG', j.format) |
84378ada15ab
test_decode_brainix_as_jpeg
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
58
diff
changeset
|
2684 self.assertEqual(j.size[0], 256) |
84378ada15ab
test_decode_brainix_as_jpeg
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
58
diff
changeset
|
2685 self.assertEqual(j.size[1], 256) |
84378ada15ab
test_decode_brainix_as_jpeg
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
58
diff
changeset
|
2686 |
84378ada15ab
test_decode_brainix_as_jpeg
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
58
diff
changeset
|
2687 a = len(DoGet(_REMOTE, '/instances/%s/preview?quality=50' % i, headers = { 'Accept' : 'image/jpeg' })) |
84378ada15ab
test_decode_brainix_as_jpeg
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
58
diff
changeset
|
2688 b = len(DoGet(_REMOTE, '/instances/%s/preview' % i, headers = { 'Accept' : 'image/jpeg' })) |
84378ada15ab
test_decode_brainix_as_jpeg
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
58
diff
changeset
|
2689 self.assertLess(a, b) |
84378ada15ab
test_decode_brainix_as_jpeg
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
58
diff
changeset
|
2690 |
84378ada15ab
test_decode_brainix_as_jpeg
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
58
diff
changeset
|
2691 j = GetImage(_REMOTE, '/instances/%s/image-uint8' % i, headers = { 'Accept' : 'image/jpeg' }) |
84378ada15ab
test_decode_brainix_as_jpeg
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
58
diff
changeset
|
2692 self.assertEqual('JPEG', j.format) |
84378ada15ab
test_decode_brainix_as_jpeg
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
58
diff
changeset
|
2693 |
84378ada15ab
test_decode_brainix_as_jpeg
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
58
diff
changeset
|
2694 # 16bit encoding is not supported with JPEG |
84378ada15ab
test_decode_brainix_as_jpeg
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
58
diff
changeset
|
2695 self.assertRaises(Exception, lambda: GetImage(_REMOTE, '/instances/%s/image-uint16' % i, headers = { 'Accept' : 'image/jpeg' })) |
84378ada15ab
test_decode_brainix_as_jpeg
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
58
diff
changeset
|
2696 self.assertRaises(Exception, lambda: GetImage(_REMOTE, '/instances/%s/image-int16' % i, headers = { 'Accept' : 'image/jpeg' })) |
84378ada15ab
test_decode_brainix_as_jpeg
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
58
diff
changeset
|
2697 |
84378ada15ab
test_decode_brainix_as_jpeg
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
58
diff
changeset
|
2698 # No matching content type |
84378ada15ab
test_decode_brainix_as_jpeg
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
58
diff
changeset
|
2699 self.assertRaises(Exception, lambda: GetImage(_REMOTE, '/instances/%s/preview' % i, headers = { 'Accept' : 'application/pdf' })) |
69
83fd88230097
test_media_encodings
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
68
diff
changeset
|
2700 |
83fd88230097
test_media_encodings
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
68
diff
changeset
|
2701 |
83fd88230097
test_media_encodings
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
68
diff
changeset
|
2702 |
83fd88230097
test_media_encodings
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
68
diff
changeset
|
2703 def test_media_encodings(self): |
83fd88230097
test_media_encodings
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
68
diff
changeset
|
2704 ascii = UploadInstance(_REMOTE, 'Knee/T1/IM-0001-0001.dcm')['ID'] |
83fd88230097
test_media_encodings
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
68
diff
changeset
|
2705 latin1 = UploadInstance(_REMOTE, 'Brainix/Epi/IM-0001-0001.dcm')['ID'] |
83fd88230097
test_media_encodings
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
68
diff
changeset
|
2706 latin2 = UploadInstance(_REMOTE, 'MarekLatin2.dcm')['ID'] |
83fd88230097
test_media_encodings
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
68
diff
changeset
|
2707 |
83fd88230097
test_media_encodings
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
68
diff
changeset
|
2708 tmp = DoPost(_REMOTE, '/tools/create-media', [ascii,latin1,latin2]) |
83fd88230097
test_media_encodings
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
68
diff
changeset
|
2709 z = zipfile.ZipFile(StringIO(tmp), "r") |
83fd88230097
test_media_encodings
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
68
diff
changeset
|
2710 |
83fd88230097
test_media_encodings
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
68
diff
changeset
|
2711 self.assertEqual(4, len(z.namelist())) |
83fd88230097
test_media_encodings
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
68
diff
changeset
|
2712 self.assertTrue('IMAGES/IM0' in z.namelist()) |
83fd88230097
test_media_encodings
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
68
diff
changeset
|
2713 self.assertTrue('IMAGES/IM1' in z.namelist()) |
83fd88230097
test_media_encodings
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
68
diff
changeset
|
2714 self.assertTrue('IMAGES/IM2' in z.namelist()) |
83fd88230097
test_media_encodings
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
68
diff
changeset
|
2715 self.assertTrue('DICOMDIR' in z.namelist()) |
83fd88230097
test_media_encodings
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
68
diff
changeset
|
2716 |
83fd88230097
test_media_encodings
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
68
diff
changeset
|
2717 try: |
83fd88230097
test_media_encodings
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
68
diff
changeset
|
2718 os.remove('/tmp/DICOMDIR') |
83fd88230097
test_media_encodings
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
68
diff
changeset
|
2719 except: |
83fd88230097
test_media_encodings
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
68
diff
changeset
|
2720 # The file does not exist |
83fd88230097
test_media_encodings
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
68
diff
changeset
|
2721 pass |
83fd88230097
test_media_encodings
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
68
diff
changeset
|
2722 |
83fd88230097
test_media_encodings
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
68
diff
changeset
|
2723 z.extract('DICOMDIR', '/tmp') |
83fd88230097
test_media_encodings
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
68
diff
changeset
|
2724 a = subprocess.check_output([ FindExecutable('dciodvfy'), '/tmp/DICOMDIR' ], |
83fd88230097
test_media_encodings
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
68
diff
changeset
|
2725 stderr = subprocess.STDOUT).split('\n') |
83fd88230097
test_media_encodings
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
68
diff
changeset
|
2726 |
83fd88230097
test_media_encodings
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
68
diff
changeset
|
2727 a = subprocess.check_output([ FindExecutable('dcentvfy'), '/tmp/DICOMDIR' ], |
83fd88230097
test_media_encodings
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
68
diff
changeset
|
2728 stderr = subprocess.STDOUT).split('\n') |
83fd88230097
test_media_encodings
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
68
diff
changeset
|
2729 self.assertEqual(1, len(a)) |
83fd88230097
test_media_encodings
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
68
diff
changeset
|
2730 self.assertEqual('', a[0]) |
83fd88230097
test_media_encodings
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
68
diff
changeset
|
2731 |
83fd88230097
test_media_encodings
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
68
diff
changeset
|
2732 a = subprocess.check_output([ FindExecutable('dcm2xml'), '/tmp/DICOMDIR' ]) |
83fd88230097
test_media_encodings
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
68
diff
changeset
|
2733 self.assertTrue(re.search('1.3.46.670589.11.17521.5.0.3124.2008081908590448738', a) != None) |
83fd88230097
test_media_encodings
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
68
diff
changeset
|
2734 self.assertTrue(re.search('1.3.46.670589.11.0.0.11.4.2.0.8743.5.5396.2006120114333648576', a) != None) |
83fd88230097
test_media_encodings
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
68
diff
changeset
|
2735 self.assertTrue(re.search('1.2.826.0.1.3680043.2.1569.1.4.323026757.1700.1399452091.57', a) != None) |
83fd88230097
test_media_encodings
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
68
diff
changeset
|
2736 |
83fd88230097
test_media_encodings
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
68
diff
changeset
|
2737 os.remove('/tmp/DICOMDIR') |
71
48740070cbf1
TDD: tests for ongoing development of counter tags in C-Find
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
70
diff
changeset
|
2738 |
48740070cbf1
TDD: tests for ongoing development of counter tags in C-Find
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
70
diff
changeset
|
2739 |
48740070cbf1
TDD: tests for ongoing development of counter tags in C-Find
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
70
diff
changeset
|
2740 def test_findscu_counters(self): |
48740070cbf1
TDD: tests for ongoing development of counter tags in C-Find
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
70
diff
changeset
|
2741 UploadInstance(_REMOTE, 'Comunix/Ct/IM-0001-0001.dcm') |
48740070cbf1
TDD: tests for ongoing development of counter tags in C-Find
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
70
diff
changeset
|
2742 UploadInstance(_REMOTE, 'Comunix/Pet/IM-0001-0001.dcm') |
48740070cbf1
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2743 UploadInstance(_REMOTE, 'Comunix/Pet/IM-0001-0002.dcm') |
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2744 |
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2745 i = CallFindScu([ '-k', '0008,0052=PATIENT', '-k', 'NumberOfPatientRelatedStudies' ]) |
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2746 s = re.findall('\(0020,1200\).*?\[(.*?)\]', i) |
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2747 self.assertEqual(1, len(s)) |
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2748 self.assertTrue('1 ' in s) |
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2749 |
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2750 i = CallFindScu([ '-k', '0008,0052=PATIENT', '-k', 'NumberOfPatientRelatedSeries' ]) |
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2751 s = re.findall('\(0020,1202\).*?\[(.*?)\]', i) |
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2752 self.assertEqual(1, len(s)) |
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2753 self.assertTrue('2 ' in s) |
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2754 |
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2755 i = CallFindScu([ '-k', '0008,0052=PATIENT', '-k', 'NumberOfPatientRelatedInstances' ]) |
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2756 s = re.findall('\(0020,1204\).*?\[(.*?)\]', i) |
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2757 self.assertEqual(1, len(s)) |
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2758 self.assertTrue('3 ' in s) |
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2759 |
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2760 i = CallFindScu([ '-k', '0008,0052=STUDY', '-k', 'NumberOfStudyRelatedSeries' ]) |
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2761 s = re.findall('\(0020,1206\).*?\[(.*?)\]', i) |
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2762 self.assertEqual(1, len(s)) |
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2763 self.assertTrue('2 ' in s) |
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2764 |
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2765 i = CallFindScu([ '-k', '0008,0052=STUDY', '-k', 'NumberOfStudyRelatedInstances' ]) |
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2766 s = re.findall('\(0020,1208\).*?\[(.*?)\]', i) |
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2767 self.assertEqual(1, len(s)) |
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2768 self.assertTrue('3 ' in s) |
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2769 |
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2770 i = CallFindScu([ '-k', '0008,0052=SERIES', '-k', 'NumberOfSeriesRelatedInstances' ]) |
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2771 s = re.findall('\(0020,1209\).*?\[(.*?)\]', i) |
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2772 self.assertEqual(2, len(s)) |
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2773 self.assertTrue('1 ' in s) |
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2774 self.assertTrue('2 ' in s) |
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2775 |
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2776 i = CallFindScu([ '-k', '0008,0052=STUDY', '-k', 'ModalitiesInStudy' ]) |
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2777 s = re.findall('\(0008,0061\).*?\[(.*?)\]', i) |
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2778 self.assertEqual(1, len(s)) |
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2779 t = map(lambda x: x.strip(), s[0].split('\\')) |
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2780 self.assertTrue('PT' in t) |
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2781 self.assertTrue('CT' in t) |
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2782 |
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2783 i = CallFindScu([ '-k', '0008,0052=STUDY', '-k', 'SOPClassesInStudy' ]) |
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2784 s = re.findall('\(0008,0062\).*?\[(.*?)\]', i) |
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2785 self.assertEqual(1, len(s)) |
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2786 t = map(lambda x: x.strip(), s[0].split('\\')) |
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2787 self.assertTrue('1.2.840.10008.5.1.4.1.1.2' in t) |
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2788 self.assertTrue('1.2.840.10008.5.1.4.1.1.128' in t) |
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2789 |
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2790 |
78
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2791 def test_decode_transfer_syntax(self): |
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2792 def Check(t, md5): |
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2793 i = UploadInstance(_REMOTE, 'TransferSyntaxes/%s.dcm' % t)['ID'] |
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2794 |
89
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2795 if t != '1.2.840.10008.1.2': # This file has no meta header |
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2796 transferSyntax = DoGet(_REMOTE, '/instances/%s/metadata/TransferSyntax' % i) |
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2797 self.assertEqual(t, transferSyntax) |
74b7b9aed5f8
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2798 |
78
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2799 if md5 == None: |
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2800 self.assertRaises(Exception, lambda: DoGet(_REMOTE, '/instances/%s/preview' % i)) |
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2801 else: |
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2802 m = ComputeMD5(DoGet(_REMOTE, '/instances/%s/preview' % i)) |
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2803 self.assertEqual(m, md5) |
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2804 |
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2805 Check('1.2.840.10008.1.2.1', 'fae08d5415c4c0cd2cdbae4522408631') |
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2806 Check('1.2.840.10008.1.2.2', 'f3d9784768b8feb54d6a50b6d5c37682') |
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2807 Check('1.2.840.10008.1.2.4.50', '496326046974eea718dbc16b997c646b') |
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2808 Check('1.2.840.10008.1.2.4.51', 'ccbe75909fe5c9f7361b48416a53fc41') |
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2809 Check('1.2.840.10008.1.2.4.57', '7bbefe11d976b1be4e568915c6a82fc3') |
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2810 Check('1.2.840.10008.1.2.4.70', '7132cfbc457305b04b59787030c785d2') |
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2811 Check('1.2.840.10008.1.2.4.80', '6ff51ae525d362e0d04f550a64075a0e') |
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2812 Check('1.2.840.10008.1.2.4.81', '801579ae7cbf28e604ea74f2c99fa2ca') |
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2813 Check('1.2.840.10008.1.2.5', '6ff51ae525d362e0d04f550a64075a0e') # RLE, supported since Orthanc 1.0.1 |
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2814 Check('1.2.840.10008.1.2', 'd54aed9f67a100984b42942cc2e9939b') |
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2815 Check('1.2.840.10008.1.2.4.90', None) # JPEG-2000 image, not supported |
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2816 Check('1.2.840.10008.1.2.4.91', None) # JPEG-2000 image, not supported |
79 | 2817 |
2818 | |
2819 def test_raw_frame(self): | |
2820 s = UploadInstance(_REMOTE, 'Issue22.dcm')['ID'] | |
2821 self.assertEqual(24, len(DoGet(_REMOTE, '/instances/%s/frames' % s))) | |
2822 a = DoGet(_REMOTE, '/instances/%s/frames/0/raw' % s) | |
2823 self.assertEqual(512 * 512 * 2, len(a)) | |
2824 self.assertEqual(512 * 512 * 2, len(DoGet(_REMOTE, '/instances/%s/frames/23/raw' % s))) | |
2825 self.assertRaises(Exception, lambda: DoGet(_REMOTE, '/instances/%s/frames/24/raw' % s)) | |
2826 self.assertEqual('1914287dc4d958eca21fdaacfb3482fa', ComputeMD5(a)) | |
2827 | |
2828 s = UploadInstance(_REMOTE, 'Multiframe.dcm')['ID'] | |
2829 self.assertEqual(76, len(DoGet(_REMOTE, '/instances/%s/frames' % s))) | |
2830 self.assertEqual(186274, len(DoGet(_REMOTE, '/instances/%s/frames/0/raw' % s))) | |
2831 self.assertEqual(189424, len(DoGet(_REMOTE, '/instances/%s/frames/75/raw' % s))) | |
2832 self.assertRaises(Exception, lambda: DoGet(_REMOTE, '/instances/%s/frames/76/raw' % s)) | |
2833 im = GetImage(_REMOTE, '/instances/%s/frames/0/raw' % s) | |
2834 self.assertEqual("L", im.mode) | |
2835 self.assertEqual(512, im.size[0]) | |
2836 self.assertEqual(512, im.size[1]) | |
2837 | |
2838 # Test an image with 2 JPEG frames spread over multiple fragments | |
2839 s = UploadInstance(_REMOTE, 'LenaTwiceWithFragments.dcm')['ID'] | |
2840 self.assertEqual(2, len(DoGet(_REMOTE, '/instances/%s/frames' % s))) | |
2841 a = DoGet(_REMOTE, '/instances/%s/frames/0/raw' % s) | |
2842 b = DoGet(_REMOTE, '/instances/%s/frames/1/raw' % s) | |
2843 self.assertEqual(69214, len(a)) | |
2844 self.assertEqual(ComputeMD5(a), ComputeMD5(b)) | |
2845 self.assertRaises(Exception, lambda: DoGet(_REMOTE, '/instances/%s/frames/2/raw' % s)) | |
2846 im = GetImage(_REMOTE, '/instances/%s/frames/0/raw' % s) | |
2847 self.assertEqual("RGB", im.mode) | |
2848 self.assertEqual(512, im.size[0]) | |
2849 self.assertEqual(512, im.size[1]) | |
2850 im = GetImage(_REMOTE, '/instances/%s/frames/0/preview' % s) | |
2851 self.assertEqual("RGB", im.mode) | |
2852 self.assertEqual(512, im.size[0]) | |
2853 self.assertEqual(512, im.size[1]) | |
81 | 2854 |
2855 | |
2856 | |
2857 def test_rest_movescu(self): | |
2858 self.assertEqual(0, len(DoGet(_REMOTE, '/patients'))) | |
2859 | |
2860 # Upload 4 instances | |
2861 UploadInstance(_REMOTE, 'Brainix/Flair/IM-0001-0001.dcm') | |
2862 UploadInstance(_REMOTE, 'Brainix/Flair/IM-0001-0002.dcm') | |
2863 UploadInstance(_REMOTE, 'Brainix/Epi/IM-0001-0001.dcm') | |
2864 UploadInstance(_REMOTE, 'Knee/T2/IM-0001-0001.dcm') | |
2865 | |
2866 self.assertEqual(2, len(DoGet(_REMOTE, '/patients'))) | |
2867 for p in DoGet(_REMOTE, '/patients'): | |
2868 DoPost(_REMOTE, '/modalities/orthanctest/store', p) | |
2869 DoDelete(_REMOTE, '/patients/%s' % p) | |
2870 | |
2871 self.assertEqual(0, len(DoGet(_REMOTE, '/patients'))) | |
2872 | |
2873 # Upload instance Brainix/Flair/IM-0001-0001.dcm | |
2874 DoPost(_REMOTE, '/modalities/orthanctest/move', { 'Level' : 'Instance', | |
2875 'Resources' : [ | |
2876 { | |
2877 'StudyInstanceUID' : '2.16.840.1.113669.632.20.1211.10000357775', | |
2878 'SeriesInstanceUID' : '1.3.46.670589.11.0.0.11.4.2.0.8743.5.5396.2006120114285654497', | |
2879 'SOPInstanceUID' : '1.3.46.670589.11.0.0.11.4.2.0.8743.5.5396.2006120114314079549', | |
2880 } | |
2881 ]}) | |
2882 | |
2883 # Upload series Brainix/Flair/* | |
2884 self.assertEqual(1, len(DoGet(_REMOTE, '/patients'))) | |
2885 self.assertEqual(1, len(DoGet(_REMOTE, '/studies'))) | |
2886 self.assertEqual(1, len(DoGet(_REMOTE, '/series'))) | |
2887 self.assertEqual(1, len(DoGet(_REMOTE, '/instances'))) | |
2888 | |
2889 DoPost(_REMOTE, '/modalities/orthanctest/move', { 'Level' : 'Series', | |
2890 'Resources' : [ | |
2891 { | |
2892 'StudyInstanceUID' : '2.16.840.1.113669.632.20.1211.10000357775', | |
2893 'SeriesInstanceUID' : '1.3.46.670589.11.0.0.11.4.2.0.8743.5.5396.2006120114285654497', | |
2894 } | |
2895 ]}) | |
2896 self.assertEqual(1, len(DoGet(_REMOTE, '/patients'))) | |
2897 self.assertEqual(1, len(DoGet(_REMOTE, '/studies'))) | |
2898 self.assertEqual(1, len(DoGet(_REMOTE, '/series'))) | |
2899 self.assertEqual(2, len(DoGet(_REMOTE, '/instances'))) | |
2900 | |
2901 # Upload series Brainix/Epi/* | |
2902 DoPost(_REMOTE, '/modalities/orthanctest/move', { 'Level' : 'Series', | |
2903 'Resources' : [ | |
2904 { | |
2905 'StudyInstanceUID' : '2.16.840.1.113669.632.20.1211.10000357775', | |
2906 'SeriesInstanceUID' : '1.3.46.670589.11.0.0.11.4.2.0.8743.5.5396.2006120114314125550', | |
2907 } | |
2908 ]}) | |
2909 self.assertEqual(1, len(DoGet(_REMOTE, '/patients'))) | |
2910 self.assertEqual(1, len(DoGet(_REMOTE, '/studies'))) | |
2911 self.assertEqual(2, len(DoGet(_REMOTE, '/series'))) | |
2912 self.assertEqual(3, len(DoGet(_REMOTE, '/instances'))) | |
2913 | |
2914 # Upload study Knee/* | |
2915 DoPost(_REMOTE, '/modalities/orthanctest/move', { 'Level' : 'Study', | |
2916 'Resources' : [ | |
2917 { | |
2918 'StudyInstanceUID' : '2.16.840.1.113669.632.20.121711.10000160881', | |
2919 } | |
2920 ]}) | |
2921 self.assertEqual(2, len(DoGet(_REMOTE, '/patients'))) | |
2922 self.assertEqual(2, len(DoGet(_REMOTE, '/studies'))) | |
2923 self.assertEqual(3, len(DoGet(_REMOTE, '/series'))) | |
2924 self.assertEqual(4, len(DoGet(_REMOTE, '/instances'))) | |
2925 | |
2926 # Reset | |
2927 for p in DoGet(_REMOTE, '/patients'): | |
2928 DoDelete(_REMOTE, '/patients/%s' % p) | |
2929 | |
2930 self.assertEqual(0, len(DoGet(_REMOTE, '/patients'))) | |
2931 | |
2932 | |
2933 # Upload all at once | |
2934 DoPost(_REMOTE, '/modalities/orthanctest/move', { 'Level' : 'Study', | |
2935 'Resources' : [ | |
2936 { | |
2937 'StudyInstanceUID' : '2.16.840.1.113669.632.20.121711.10000160881', | |
2938 }, | |
2939 { | |
2940 'StudyInstanceUID' : '2.16.840.1.113669.632.20.1211.10000357775', | |
2941 } | |
2942 ]}) | |
2943 self.assertEqual(2, len(DoGet(_REMOTE, '/patients'))) | |
2944 self.assertEqual(2, len(DoGet(_REMOTE, '/studies'))) | |
2945 self.assertEqual(3, len(DoGet(_REMOTE, '/series'))) | |
2946 self.assertEqual(4, len(DoGet(_REMOTE, '/instances'))) | |
2947 | |
86
0401ef51f5c1
test_reconstruct_json
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
83
diff
changeset
|
2948 |
0401ef51f5c1
test_reconstruct_json
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
83
diff
changeset
|
2949 |
0401ef51f5c1
test_reconstruct_json
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
83
diff
changeset
|
2950 def test_reconstruct_json(self): |
0401ef51f5c1
test_reconstruct_json
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
83
diff
changeset
|
2951 self.assertEqual(0, len(DoGet(_REMOTE, '/patients'))) |
0401ef51f5c1
test_reconstruct_json
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
83
diff
changeset
|
2952 |
0401ef51f5c1
test_reconstruct_json
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
83
diff
changeset
|
2953 instance = UploadInstance(_REMOTE, 'DummyCT.dcm')['ID'] |
0401ef51f5c1
test_reconstruct_json
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
83
diff
changeset
|
2954 first = DoGet(_REMOTE, '/instances/%s/tags' % instance) |
0401ef51f5c1
test_reconstruct_json
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
83
diff
changeset
|
2955 |
0401ef51f5c1
test_reconstruct_json
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
83
diff
changeset
|
2956 self.assertEqual('TWINOW', first['0008,1010']['Value']) |
0401ef51f5c1
test_reconstruct_json
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
83
diff
changeset
|
2957 self.assertEqual(2, len(DoGet(_REMOTE, '/instances/%s/attachments' % instance))) |
0401ef51f5c1
test_reconstruct_json
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
83
diff
changeset
|
2958 |
0401ef51f5c1
test_reconstruct_json
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
83
diff
changeset
|
2959 # Cannot delete the "DICOM" attachment |
0401ef51f5c1
test_reconstruct_json
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
83
diff
changeset
|
2960 self.assertRaises(Exception, lambda: DoDelete(_REMOTE, '/instances/%s/attachments/dicom' % instance)) |
0401ef51f5c1
test_reconstruct_json
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
83
diff
changeset
|
2961 |
0401ef51f5c1
test_reconstruct_json
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
83
diff
changeset
|
2962 # Can delete the "DICOM as JSON" attachment |
0401ef51f5c1
test_reconstruct_json
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
83
diff
changeset
|
2963 r = DoDelete(_REMOTE, '/instances/%s/attachments/dicom-as-json' % instance) |
0401ef51f5c1
test_reconstruct_json
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
83
diff
changeset
|
2964 self.assertTrue(type(r) is dict and len(r) == 0) |
0401ef51f5c1
test_reconstruct_json
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
83
diff
changeset
|
2965 |
0401ef51f5c1
test_reconstruct_json
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
83
diff
changeset
|
2966 # Only the "DICOM" attachment subsists |
0401ef51f5c1
test_reconstruct_json
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
83
diff
changeset
|
2967 self.assertEqual(1, len(DoGet(_REMOTE, '/instances/%s/attachments' % instance))) |
0401ef51f5c1
test_reconstruct_json
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
83
diff
changeset
|
2968 |
0401ef51f5c1
test_reconstruct_json
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
83
diff
changeset
|
2969 # Cannot manually reconstruct the "DICOM as JSON" attachment |
0401ef51f5c1
test_reconstruct_json
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
83
diff
changeset
|
2970 self.assertRaises(Exception, lambda: DoPut(_REMOTE, '/patients/%s/attachments/dicom-as-json' % patient, 'hello')) |
0401ef51f5c1
test_reconstruct_json
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
83
diff
changeset
|
2971 |
0401ef51f5c1
test_reconstruct_json
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
83
diff
changeset
|
2972 # Transparently reconstruct the "DICOM as JSON" attachment |
0401ef51f5c1
test_reconstruct_json
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
83
diff
changeset
|
2973 self.assertRaises(Exception, lambda: DoGet(_REMOTE, '/instances/%s/attachments/dicom-as-json' % instance)) |
0401ef51f5c1
test_reconstruct_json
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
83
diff
changeset
|
2974 second = DoGet(_REMOTE, '/instances/%s/tags' % instance) |
0401ef51f5c1
test_reconstruct_json
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
83
diff
changeset
|
2975 self.assertEqual(2, len(DoGet(_REMOTE, '/instances/%s/attachments' % instance))) |
0401ef51f5c1
test_reconstruct_json
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
83
diff
changeset
|
2976 |
0401ef51f5c1
test_reconstruct_json
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
83
diff
changeset
|
2977 third = DoGet(_REMOTE, '/instances/%s/attachments/dicom-as-json/data' % instance) |
0401ef51f5c1
test_reconstruct_json
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
83
diff
changeset
|
2978 self.assertEqual(str(first), str(second)) |
0401ef51f5c1
test_reconstruct_json
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
83
diff
changeset
|
2979 self.assertEqual(str(first), str(third)) |
87
4b24faec842b
test_reconstruct_json2 + test_private_tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
86
diff
changeset
|
2980 |
4b24faec842b
test_reconstruct_json2 + test_private_tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
86
diff
changeset
|
2981 |
4b24faec842b
test_reconstruct_json2 + test_private_tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
86
diff
changeset
|
2982 def test_reconstruct_json2(self): |
4b24faec842b
test_reconstruct_json2 + test_private_tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
86
diff
changeset
|
2983 self.assertEqual(0, len(DoGet(_REMOTE, '/patients'))) |
4b24faec842b
test_reconstruct_json2 + test_private_tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
86
diff
changeset
|
2984 |
4b24faec842b
test_reconstruct_json2 + test_private_tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
86
diff
changeset
|
2985 a = UploadInstance(_REMOTE, 'Brainix/Flair/IM-0001-0001.dcm')['ID'] |
4b24faec842b
test_reconstruct_json2 + test_private_tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
86
diff
changeset
|
2986 b = UploadInstance(_REMOTE, 'Knee/T2/IM-0001-0001.dcm')['ID'] |
4b24faec842b
test_reconstruct_json2 + test_private_tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
86
diff
changeset
|
2987 |
4b24faec842b
test_reconstruct_json2 + test_private_tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
86
diff
changeset
|
2988 self.assertEqual('BRAINIX', DoGet(_REMOTE, '/instances/%s/tags?simplify' % a)['PatientName']) |
4b24faec842b
test_reconstruct_json2 + test_private_tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
86
diff
changeset
|
2989 self.assertEqual('KNEE', DoGet(_REMOTE, '/instances/%s/tags?simplify' % b)['PatientName']) |
4b24faec842b
test_reconstruct_json2 + test_private_tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
86
diff
changeset
|
2990 |
4b24faec842b
test_reconstruct_json2 + test_private_tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
86
diff
changeset
|
2991 self.assertEqual(2, len(DoGet(_REMOTE, '/instances/%s/attachments' % a))) |
4b24faec842b
test_reconstruct_json2 + test_private_tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
86
diff
changeset
|
2992 self.assertEqual(2, len(DoGet(_REMOTE, '/instances/%s/attachments' % b))) |
4b24faec842b
test_reconstruct_json2 + test_private_tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
86
diff
changeset
|
2993 |
4b24faec842b
test_reconstruct_json2 + test_private_tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
86
diff
changeset
|
2994 DoPost(_REMOTE, '/tools/invalidate-tags', '', 'text/plain') |
4b24faec842b
test_reconstruct_json2 + test_private_tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
86
diff
changeset
|
2995 |
4b24faec842b
test_reconstruct_json2 + test_private_tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
86
diff
changeset
|
2996 self.assertEqual(1, len(DoGet(_REMOTE, '/instances/%s/attachments' % a))) |
4b24faec842b
test_reconstruct_json2 + test_private_tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
86
diff
changeset
|
2997 self.assertEqual(1, len(DoGet(_REMOTE, '/instances/%s/attachments' % b))) |
4b24faec842b
test_reconstruct_json2 + test_private_tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
86
diff
changeset
|
2998 |
4b24faec842b
test_reconstruct_json2 + test_private_tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
86
diff
changeset
|
2999 self.assertEqual('BRAINIX', DoGet(_REMOTE, '/instances/%s/tags?simplify' % a)['PatientName']) |
4b24faec842b
test_reconstruct_json2 + test_private_tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
86
diff
changeset
|
3000 self.assertEqual('KNEE', DoGet(_REMOTE, '/instances/%s/tags?simplify' % b)['PatientName']) |
4b24faec842b
test_reconstruct_json2 + test_private_tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
86
diff
changeset
|
3001 |
4b24faec842b
test_reconstruct_json2 + test_private_tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
86
diff
changeset
|
3002 self.assertEqual(2, len(DoGet(_REMOTE, '/instances/%s/attachments' % a))) |
4b24faec842b
test_reconstruct_json2 + test_private_tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
86
diff
changeset
|
3003 self.assertEqual(2, len(DoGet(_REMOTE, '/instances/%s/attachments' % b))) |
4b24faec842b
test_reconstruct_json2 + test_private_tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
86
diff
changeset
|
3004 |
4b24faec842b
test_reconstruct_json2 + test_private_tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
86
diff
changeset
|
3005 |
4b24faec842b
test_reconstruct_json2 + test_private_tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
86
diff
changeset
|
3006 def test_private_tags(self): |
4b24faec842b
test_reconstruct_json2 + test_private_tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
86
diff
changeset
|
3007 i = UploadInstance(_REMOTE, 'PrivateMDNTags.dcm')['ID'] |
4b24faec842b
test_reconstruct_json2 + test_private_tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
86
diff
changeset
|
3008 t = DoGet(_REMOTE, '/instances/%s/tags?simplify' % i) |
4b24faec842b
test_reconstruct_json2 + test_private_tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
86
diff
changeset
|
3009 self.assertEqual('1.2.840.113704.1.111.6320.1342451261.21', t['PET-CT Multi Modality Name']) |
4b24faec842b
test_reconstruct_json2 + test_private_tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
86
diff
changeset
|
3010 self.assertEqual('p37s0_na_ctac.img', t['Original Image Filename']) |
4b24faec842b
test_reconstruct_json2 + test_private_tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
86
diff
changeset
|
3011 |
92
dbcbffb889da
test_findscu_encoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
89
diff
changeset
|
3012 |
dbcbffb889da
test_findscu_encoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
89
diff
changeset
|
3013 def test_findscu_encoding(self): |
dbcbffb889da
test_findscu_encoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
89
diff
changeset
|
3014 # Check out ../Database/Encodings/Generate.sh |
dbcbffb889da
test_findscu_encoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
89
diff
changeset
|
3015 TEST = u'Test-éüäöòДΘĝדصķћ๛ネİ' |
dbcbffb889da
test_findscu_encoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
89
diff
changeset
|
3016 ENCODINGS = { |
dbcbffb889da
test_findscu_encoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
89
diff
changeset
|
3017 'Arabic' : [ 'ISO_IR 127' ], |
dbcbffb889da
test_findscu_encoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
89
diff
changeset
|
3018 'Ascii' : [ 'ISO_IR 6' ], # More accurately, ISO 646 |
dbcbffb889da
test_findscu_encoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
89
diff
changeset
|
3019 'Cyrillic' : [ 'ISO_IR 144' ], |
dbcbffb889da
test_findscu_encoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
89
diff
changeset
|
3020 'Greek' : [ 'ISO_IR 126' ], |
dbcbffb889da
test_findscu_encoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
89
diff
changeset
|
3021 'Hebrew' : [ 'ISO_IR 138' ], |
dbcbffb889da
test_findscu_encoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
89
diff
changeset
|
3022 'Japanese' : [ 'ISO_IR 13', 'shift-jis' ], |
dbcbffb889da
test_findscu_encoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
89
diff
changeset
|
3023 'Latin1' : [ 'ISO_IR 100' ], |
dbcbffb889da
test_findscu_encoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
89
diff
changeset
|
3024 'Latin2' : [ 'ISO_IR 101' ], |
dbcbffb889da
test_findscu_encoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
89
diff
changeset
|
3025 'Latin3' : [ 'ISO_IR 109' ], |
dbcbffb889da
test_findscu_encoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
89
diff
changeset
|
3026 'Latin4' : [ 'ISO_IR 110' ], |
dbcbffb889da
test_findscu_encoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
89
diff
changeset
|
3027 'Latin5' : [ 'ISO_IR 148' ], |
dbcbffb889da
test_findscu_encoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
89
diff
changeset
|
3028 'Thai' : [ 'ISO_IR 166', 'tis-620' ], |
dbcbffb889da
test_findscu_encoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
89
diff
changeset
|
3029 'Utf8' : [ 'ISO_IR 192' ], |
dbcbffb889da
test_findscu_encoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
89
diff
changeset
|
3030 } |
dbcbffb889da
test_findscu_encoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
89
diff
changeset
|
3031 |
dbcbffb889da
test_findscu_encoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
89
diff
changeset
|
3032 for name in ENCODINGS.iterkeys(): |
dbcbffb889da
test_findscu_encoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
89
diff
changeset
|
3033 if len(ENCODINGS[name]) == 1: |
dbcbffb889da
test_findscu_encoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
89
diff
changeset
|
3034 ENCODINGS[name].append(name.lower()) |
dbcbffb889da
test_findscu_encoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
89
diff
changeset
|
3035 |
dbcbffb889da
test_findscu_encoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
89
diff
changeset
|
3036 UploadInstance(_REMOTE, 'Encodings/Lena-utf8.dcm') |
dbcbffb889da
test_findscu_encoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
89
diff
changeset
|
3037 |
dbcbffb889da
test_findscu_encoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
89
diff
changeset
|
3038 for name in ENCODINGS.iterkeys(): |
dbcbffb889da
test_findscu_encoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
89
diff
changeset
|
3039 self.assertEqual(name, DoPut(_REMOTE, '/tools/default-encoding', name)) |
dbcbffb889da
test_findscu_encoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
89
diff
changeset
|
3040 self.assertEqual(name, DoGet(_REMOTE, '/tools/default-encoding')) |
dbcbffb889da
test_findscu_encoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
89
diff
changeset
|
3041 |
dbcbffb889da
test_findscu_encoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
89
diff
changeset
|
3042 i = CallFindScu([ '-k', '0008,0052=STUDY', |
dbcbffb889da
test_findscu_encoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
89
diff
changeset
|
3043 '-k', 'SpecificCharacterSet', |
dbcbffb889da
test_findscu_encoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
89
diff
changeset
|
3044 '-k', 'PatientName' ]) |
dbcbffb889da
test_findscu_encoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
89
diff
changeset
|
3045 |
dbcbffb889da
test_findscu_encoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
89
diff
changeset
|
3046 characterSet = re.findall('\(0008,0005\).*?\[(.*?)\]', i) |
dbcbffb889da
test_findscu_encoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
89
diff
changeset
|
3047 self.assertEqual(1, len(characterSet)) |
dbcbffb889da
test_findscu_encoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
89
diff
changeset
|
3048 self.assertEqual(ENCODINGS[name][0], characterSet[0].strip()) |
dbcbffb889da
test_findscu_encoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
89
diff
changeset
|
3049 |
dbcbffb889da
test_findscu_encoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
89
diff
changeset
|
3050 patientName = re.findall('\(0010,0010\).*?\[(.*?)\]', i) |
dbcbffb889da
test_findscu_encoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
89
diff
changeset
|
3051 self.assertEqual(1, len(patientName)) |
dbcbffb889da
test_findscu_encoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
89
diff
changeset
|
3052 |
dbcbffb889da
test_findscu_encoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
89
diff
changeset
|
3053 expected = TEST.encode(ENCODINGS[name][1], 'ignore') |
dbcbffb889da
test_findscu_encoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
89
diff
changeset
|
3054 self.assertEqual(expected, patientName[0].strip()) |
dbcbffb889da
test_findscu_encoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
89
diff
changeset
|
3055 |
dbcbffb889da
test_findscu_encoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
89
diff
changeset
|
3056 |
dbcbffb889da
test_findscu_encoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
89
diff
changeset
|
3057 #for master in ENCODINGS: |
dbcbffb889da
test_findscu_encoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
89
diff
changeset
|
3058 for master in [ 'Latin1', 'Utf8', 'Cyrillic' ]: # Shortcut to speedup tests |
dbcbffb889da
test_findscu_encoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
89
diff
changeset
|
3059 self.assertEqual(master, DoPut(_REMOTE, '/tools/default-encoding', master)) |
dbcbffb889da
test_findscu_encoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
89
diff
changeset
|
3060 self.assertEqual(master, DoGet(_REMOTE, '/tools/default-encoding')) |
dbcbffb889da
test_findscu_encoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
89
diff
changeset
|
3061 |
dbcbffb889da
test_findscu_encoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
89
diff
changeset
|
3062 for name in ENCODINGS: |
dbcbffb889da
test_findscu_encoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
89
diff
changeset
|
3063 DropOrthanc(_REMOTE) |
dbcbffb889da
test_findscu_encoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
89
diff
changeset
|
3064 UploadInstance(_REMOTE, 'Encodings/Lena-%s.dcm' % ENCODINGS[name][1]) |
dbcbffb889da
test_findscu_encoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
89
diff
changeset
|
3065 |
dbcbffb889da
test_findscu_encoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
89
diff
changeset
|
3066 i = CallFindScu([ '-k', '0008,0052=STUDY', |
dbcbffb889da
test_findscu_encoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
89
diff
changeset
|
3067 '-k', 'PatientID', |
dbcbffb889da
test_findscu_encoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
89
diff
changeset
|
3068 '-k', 'SpecificCharacterSet', |
dbcbffb889da
test_findscu_encoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
89
diff
changeset
|
3069 '-k', 'PatientName' ]) |
dbcbffb889da
test_findscu_encoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
89
diff
changeset
|
3070 i = i.decode(ENCODINGS[master][1]) |
dbcbffb889da
test_findscu_encoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
89
diff
changeset
|
3071 |
dbcbffb889da
test_findscu_encoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
89
diff
changeset
|
3072 characterSet = re.findall('\(0008,0005\).*?\[(.*?)\]', i) |
dbcbffb889da
test_findscu_encoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
89
diff
changeset
|
3073 self.assertEqual(1, len(characterSet)) |
dbcbffb889da
test_findscu_encoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
89
diff
changeset
|
3074 self.assertEqual(ENCODINGS[master][0], characterSet[0].strip()) |
dbcbffb889da
test_findscu_encoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
89
diff
changeset
|
3075 |
dbcbffb889da
test_findscu_encoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
89
diff
changeset
|
3076 patientId = re.findall('\(0010,0020\).*?\[(.*?)\]', i) |
dbcbffb889da
test_findscu_encoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
89
diff
changeset
|
3077 self.assertEqual(1, len(patientId)) |
dbcbffb889da
test_findscu_encoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
89
diff
changeset
|
3078 self.assertEqual(ENCODINGS[name][1], patientId[0].strip()) |
dbcbffb889da
test_findscu_encoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
89
diff
changeset
|
3079 |
dbcbffb889da
test_findscu_encoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
89
diff
changeset
|
3080 patientName = re.findall('\(0010,0010\).*?\[(.*?)\]', i) |
dbcbffb889da
test_findscu_encoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
89
diff
changeset
|
3081 self.assertEqual(1, len(patientName)) |
dbcbffb889da
test_findscu_encoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
89
diff
changeset
|
3082 |
dbcbffb889da
test_findscu_encoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
89
diff
changeset
|
3083 tmp = ENCODINGS[name][1] |
dbcbffb889da
test_findscu_encoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
89
diff
changeset
|
3084 expected = TEST.encode(tmp, 'ignore').decode(tmp) |
dbcbffb889da
test_findscu_encoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
89
diff
changeset
|
3085 tmp = ENCODINGS[master][1] |
dbcbffb889da
test_findscu_encoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
89
diff
changeset
|
3086 expected = expected.encode(tmp, 'ignore').decode(tmp) |
dbcbffb889da
test_findscu_encoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
89
diff
changeset
|
3087 |
dbcbffb889da
test_findscu_encoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
89
diff
changeset
|
3088 self.assertEqual(expected, patientName[0].strip()) |
dbcbffb889da
test_findscu_encoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
89
diff
changeset
|
3089 |
dbcbffb889da
test_findscu_encoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
89
diff
changeset
|
3090 |
dbcbffb889da
test_findscu_encoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
89
diff
changeset
|
3091 a = DoPost(_REMOTE, '/tools/find', { 'Expand' : True, |
dbcbffb889da
test_findscu_encoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
89
diff
changeset
|
3092 'Level' : 'Study', |
dbcbffb889da
test_findscu_encoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
89
diff
changeset
|
3093 'Query' : { }}) |
dbcbffb889da
test_findscu_encoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
89
diff
changeset
|
3094 self.assertEqual(1, len(a)) |
dbcbffb889da
test_findscu_encoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
89
diff
changeset
|
3095 |
dbcbffb889da
test_findscu_encoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
89
diff
changeset
|
3096 tmp = ENCODINGS[name][1] |
dbcbffb889da
test_findscu_encoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
89
diff
changeset
|
3097 self.assertEqual(TEST.encode(tmp, 'ignore').decode(tmp), a[0]["PatientMainDicomTags"]["PatientName"]) |
96
272d1229cb49
test reconstruction of tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
95
diff
changeset
|
3098 |
272d1229cb49
test reconstruction of tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
95
diff
changeset
|
3099 |
272d1229cb49
test reconstruction of tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
95
diff
changeset
|
3100 def test_reconstruct(self): |
272d1229cb49
test reconstruction of tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
95
diff
changeset
|
3101 def CompareMainDicomTag(expected, instance, level, tag): |
272d1229cb49
test reconstruction of tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
95
diff
changeset
|
3102 self.assertEqual(expected, DoGet(_REMOTE, '/instances/%s/%s' % (instance, level))['MainDicomTags'][tag].strip()) |
272d1229cb49
test reconstruction of tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
95
diff
changeset
|
3103 |
272d1229cb49
test reconstruction of tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
95
diff
changeset
|
3104 a = UploadInstance(_REMOTE, 'DummyCT.dcm')['ID'] |
272d1229cb49
test reconstruction of tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
95
diff
changeset
|
3105 |
272d1229cb49
test reconstruction of tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
95
diff
changeset
|
3106 studies = DoGet(_REMOTE, '/studies/') |
272d1229cb49
test reconstruction of tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
95
diff
changeset
|
3107 self.assertEqual(1, len(DoGet(_REMOTE, '/patients/'))) |
272d1229cb49
test reconstruction of tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
95
diff
changeset
|
3108 self.assertEqual(1, len(studies)) |
272d1229cb49
test reconstruction of tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
95
diff
changeset
|
3109 self.assertEqual(1, len(DoGet(_REMOTE, '/series/'))) |
272d1229cb49
test reconstruction of tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
95
diff
changeset
|
3110 self.assertEqual(1, len(DoGet(_REMOTE, '/instances/'))) |
272d1229cb49
test reconstruction of tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
95
diff
changeset
|
3111 |
272d1229cb49
test reconstruction of tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
95
diff
changeset
|
3112 modified = DoPost(_REMOTE, '/studies/%s/modify' % studies[0], { |
272d1229cb49
test reconstruction of tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
95
diff
changeset
|
3113 "Replace" : { |
272d1229cb49
test reconstruction of tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
95
diff
changeset
|
3114 "StudyDescription" : "hello", |
272d1229cb49
test reconstruction of tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
95
diff
changeset
|
3115 "SeriesDescription" : "world", |
272d1229cb49
test reconstruction of tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
95
diff
changeset
|
3116 "SOPClassUID" : "test", |
272d1229cb49
test reconstruction of tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
95
diff
changeset
|
3117 "SOPInstanceUID" : "myid", |
272d1229cb49
test reconstruction of tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
95
diff
changeset
|
3118 }, |
119 | 3119 "Keep" : [ "StudyInstanceUID", "SeriesInstanceUID" ], |
3120 "Force" : True | |
96
272d1229cb49
test reconstruction of tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
95
diff
changeset
|
3121 }) |
272d1229cb49
test reconstruction of tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
95
diff
changeset
|
3122 |
272d1229cb49
test reconstruction of tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
95
diff
changeset
|
3123 instances = DoGet(_REMOTE, '/instances/') |
272d1229cb49
test reconstruction of tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
95
diff
changeset
|
3124 self.assertEqual(1, len(DoGet(_REMOTE, '/patients/'))) |
272d1229cb49
test reconstruction of tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
95
diff
changeset
|
3125 self.assertEqual(1, len(DoGet(_REMOTE, '/studies/'))) |
272d1229cb49
test reconstruction of tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
95
diff
changeset
|
3126 self.assertEqual(1, len(DoGet(_REMOTE, '/series/'))) |
272d1229cb49
test reconstruction of tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
95
diff
changeset
|
3127 self.assertEqual(2, len(instances)) |
272d1229cb49
test reconstruction of tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
95
diff
changeset
|
3128 |
272d1229cb49
test reconstruction of tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
95
diff
changeset
|
3129 b = instances[0] if instances[1] == a else instances[1] |
272d1229cb49
test reconstruction of tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
95
diff
changeset
|
3130 |
272d1229cb49
test reconstruction of tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
95
diff
changeset
|
3131 CompareMainDicomTag('Knee (R)', a, 'study', 'StudyDescription') |
272d1229cb49
test reconstruction of tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
95
diff
changeset
|
3132 CompareMainDicomTag('AX. FSE PD', a, 'series', 'SeriesDescription') |
272d1229cb49
test reconstruction of tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
95
diff
changeset
|
3133 CompareMainDicomTag('1.2.840.113619.2.176.2025.1499492.7040.1171286242.109', a, '', 'SOPInstanceUID') |
272d1229cb49
test reconstruction of tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
95
diff
changeset
|
3134 CompareMainDicomTag('myid', b, '', 'SOPInstanceUID') |
272d1229cb49
test reconstruction of tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
95
diff
changeset
|
3135 self.assertEqual('1.2.840.10008.5.1.4.1.1.4', DoGet(_REMOTE, '/instances/%s/metadata/SopClassUid' % a).strip()) |
272d1229cb49
test reconstruction of tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
95
diff
changeset
|
3136 self.assertEqual('test', DoGet(_REMOTE, '/instances/%s/metadata/SopClassUid' % b).strip()) |
272d1229cb49
test reconstruction of tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
95
diff
changeset
|
3137 |
272d1229cb49
test reconstruction of tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
95
diff
changeset
|
3138 DoPost(_REMOTE, '/instances/%s/reconstruct' % b, {}) |
272d1229cb49
test reconstruction of tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
95
diff
changeset
|
3139 |
272d1229cb49
test reconstruction of tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
95
diff
changeset
|
3140 CompareMainDicomTag('hello', a, 'study', 'StudyDescription') |
272d1229cb49
test reconstruction of tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
95
diff
changeset
|
3141 CompareMainDicomTag('world', a, 'series', 'SeriesDescription') |
272d1229cb49
test reconstruction of tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
95
diff
changeset
|
3142 CompareMainDicomTag('1.2.840.113619.2.176.2025.1499492.7040.1171286242.109', a, '', 'SOPInstanceUID') |
102 | 3143 |
104 | 3144 def test_httpClient_lua(self): |
3145 with open(GetDatabasePath('Lua/HttpClient.lua'), 'r') as f: | |
102 | 3146 result = DoPost(_REMOTE, '/tools/execute-script', f.read(), 'application/lua') |
3147 | |
3148 self.assertIn('OK', result) | |
107
fddb35f7289d
test_bitbucket_issue_44
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
104
diff
changeset
|
3149 |
fddb35f7289d
test_bitbucket_issue_44
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
104
diff
changeset
|
3150 |
fddb35f7289d
test_bitbucket_issue_44
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
104
diff
changeset
|
3151 def test_bitbucket_issue_44(self): |
fddb35f7289d
test_bitbucket_issue_44
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
104
diff
changeset
|
3152 # https://bitbucket.org/sjodogne/orthanc/issues/44/bad-interpretation-of-photometric |
fddb35f7289d
test_bitbucket_issue_44
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
104
diff
changeset
|
3153 UploadInstance(_REMOTE, 'Issue44/Monochrome1.dcm') |
fddb35f7289d
test_bitbucket_issue_44
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
104
diff
changeset
|
3154 UploadInstance(_REMOTE, 'Issue44/Monochrome2.dcm') |
fddb35f7289d
test_bitbucket_issue_44
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
104
diff
changeset
|
3155 |
fddb35f7289d
test_bitbucket_issue_44
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
104
diff
changeset
|
3156 # dcmcjpeg +ua +eb Monochrome1.dcm Monochrome1-Jpeg.dcm |
fddb35f7289d
test_bitbucket_issue_44
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
104
diff
changeset
|
3157 UploadInstance(_REMOTE, 'Issue44/Monochrome1-Jpeg.dcm') |
fddb35f7289d
test_bitbucket_issue_44
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
104
diff
changeset
|
3158 |
fddb35f7289d
test_bitbucket_issue_44
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
104
diff
changeset
|
3159 # dcmcjpeg +ua Monochrome1.dcm Monochrome1-JpegLS.dcm |
fddb35f7289d
test_bitbucket_issue_44
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
104
diff
changeset
|
3160 UploadInstance(_REMOTE, 'Issue44/Monochrome1-JpegLS.dcm') |
fddb35f7289d
test_bitbucket_issue_44
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
104
diff
changeset
|
3161 |
fddb35f7289d
test_bitbucket_issue_44
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
104
diff
changeset
|
3162 monochrome1 = 'bcdd600a-a6a9c522-5f0a6e84-8657c9f3-b76e59b7' |
fddb35f7289d
test_bitbucket_issue_44
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
104
diff
changeset
|
3163 monochrome1_jpeg = '9df82121-208a2da8-0038674a-3d7a773b-b7008cd2' |
fddb35f7289d
test_bitbucket_issue_44
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
104
diff
changeset
|
3164 monochrome1_jpegls = '0486d1a2-9165573f-b1976b20-e927b016-6b8d67ab' |
fddb35f7289d
test_bitbucket_issue_44
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
104
diff
changeset
|
3165 monochrome2 = 'f00947b7-f61f7164-c93414d1-c6fbda6a-9e92ed20' |
fddb35f7289d
test_bitbucket_issue_44
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
104
diff
changeset
|
3166 |
fddb35f7289d
test_bitbucket_issue_44
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
104
diff
changeset
|
3167 for i in [ monochrome1, monochrome1_jpeg, monochrome1_jpegls ]: |
fddb35f7289d
test_bitbucket_issue_44
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
104
diff
changeset
|
3168 im = GetImage(_REMOTE, '/instances/%s/preview' % i) |
fddb35f7289d
test_bitbucket_issue_44
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
104
diff
changeset
|
3169 self.assertEqual("L", im.mode) |
fddb35f7289d
test_bitbucket_issue_44
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
104
diff
changeset
|
3170 self.assertEqual(2010, im.size[0]) |
fddb35f7289d
test_bitbucket_issue_44
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
104
diff
changeset
|
3171 self.assertEqual(2446, im.size[1]) |
fddb35f7289d
test_bitbucket_issue_44
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
104
diff
changeset
|
3172 |
fddb35f7289d
test_bitbucket_issue_44
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
104
diff
changeset
|
3173 # This is the chest image, with MONOCHROME1. Raw background is |
fddb35f7289d
test_bitbucket_issue_44
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
104
diff
changeset
|
3174 # white (255), should be rendered as black (0) => invert |
fddb35f7289d
test_bitbucket_issue_44
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
104
diff
changeset
|
3175 if i == monochrome1_jpeg: |
fddb35f7289d
test_bitbucket_issue_44
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
104
diff
changeset
|
3176 # Add some tolerance because of JPEG destructive compression |
fddb35f7289d
test_bitbucket_issue_44
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
104
diff
changeset
|
3177 self.assertGreater(10, im.getpixel((0,0))) |
fddb35f7289d
test_bitbucket_issue_44
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
104
diff
changeset
|
3178 else: |
fddb35f7289d
test_bitbucket_issue_44
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
104
diff
changeset
|
3179 self.assertEqual(0, im.getpixel((0,0))) |
fddb35f7289d
test_bitbucket_issue_44
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
104
diff
changeset
|
3180 |
fddb35f7289d
test_bitbucket_issue_44
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
104
diff
changeset
|
3181 im = GetImage(_REMOTE, '/instances/%s/preview' % monochrome2) |
fddb35f7289d
test_bitbucket_issue_44
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
104
diff
changeset
|
3182 self.assertEqual("L", im.mode) |
fddb35f7289d
test_bitbucket_issue_44
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
104
diff
changeset
|
3183 self.assertEqual(1572, im.size[0]) |
fddb35f7289d
test_bitbucket_issue_44
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
104
diff
changeset
|
3184 self.assertEqual(2010, im.size[1]) |
fddb35f7289d
test_bitbucket_issue_44
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
104
diff
changeset
|
3185 |
fddb35f7289d
test_bitbucket_issue_44
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
104
diff
changeset
|
3186 # This is the key image, with MONOCHROME2. Raw background is |
fddb35f7289d
test_bitbucket_issue_44
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
104
diff
changeset
|
3187 # white (255), should be rendered as white (255) |
fddb35f7289d
test_bitbucket_issue_44
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
104
diff
changeset
|
3188 self.assertEqual(255, im.getpixel((0,0))) |
111
7005cdeeb704
test_bitbucket_issue_42
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
107
diff
changeset
|
3189 |
7005cdeeb704
test_bitbucket_issue_42
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
107
diff
changeset
|
3190 |
7005cdeeb704
test_bitbucket_issue_42
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
107
diff
changeset
|
3191 def test_bitbucket_issue_42(self): |
7005cdeeb704
test_bitbucket_issue_42
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parents:
107
diff
changeset
|
3192 # https://bitbucket.org/sjodogne/orthanc/issues/42/fails-to-modify-a-dicom-video-file |
7005cdeeb704
test_bitbucket_issue_42
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
107
diff
changeset
|
3193 # This test fails on DCMTK 3.6.0, but succeeds in DCMTK 3.6.1 snapshots |
7005cdeeb704
test_bitbucket_issue_42
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
107
diff
changeset
|
3194 UploadInstance(_REMOTE, 'Issue42.dcm')['ID'] |
7005cdeeb704
test_bitbucket_issue_42
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
107
diff
changeset
|
3195 modified = DoPost(_REMOTE, |
7005cdeeb704
test_bitbucket_issue_42
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
107
diff
changeset
|
3196 '/patients/da128605-e040d0c4-310615d2-3475da63-df2d1ef4/modify', |
119 | 3197 '{"Replace":{"PatientID":"Hello","PatientName":"Sample patient name"},"Force":true}', |
111
7005cdeeb704
test_bitbucket_issue_42
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
107
diff
changeset
|
3198 'application/json') |
7005cdeeb704
test_bitbucket_issue_42
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
107
diff
changeset
|
3199 self.assertTrue('PatientID' in modified) |
113
3e5934363e76
test_rest_find_limitµ
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
112
diff
changeset
|
3200 |
3e5934363e76
test_rest_find_limitµ
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
112
diff
changeset
|
3201 |
3e5934363e76
test_rest_find_limitµ
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
112
diff
changeset
|
3202 def test_rest_find_limit(self): |
3e5934363e76
test_rest_find_limitµ
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parents:
112
diff
changeset
|
3203 # Check the "Since" and "Limit" parameters in URI "/tools/find" |
3e5934363e76
test_rest_find_limitµ
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
112
diff
changeset
|
3204 # Related to issue 53: https://bitbucket.org/sjodogne/orthanc/issues/53 |
111
7005cdeeb704
test_bitbucket_issue_42
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
107
diff
changeset
|
3205 |
113
3e5934363e76
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parents:
112
diff
changeset
|
3206 # Upload 6 instances |
3e5934363e76
test_rest_find_limitµ
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
112
diff
changeset
|
3207 brainix = [] |
3e5934363e76
test_rest_find_limitµ
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parents:
112
diff
changeset
|
3208 knee = [] |
3e5934363e76
test_rest_find_limitµ
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
112
diff
changeset
|
3209 for i in range(2): |
3e5934363e76
test_rest_find_limitµ
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
112
diff
changeset
|
3210 brainix.append(UploadInstance(_REMOTE, 'Brainix/Flair/IM-0001-000%d.dcm' % (i + 1)) ['ID']) |
3e5934363e76
test_rest_find_limitµ
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
112
diff
changeset
|
3211 brainix.append(UploadInstance(_REMOTE, 'Brainix/Epi/IM-0001-000%d.dcm' % (i + 1)) ['ID']) |
3e5934363e76
test_rest_find_limitµ
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
112
diff
changeset
|
3212 knee.append(UploadInstance(_REMOTE, 'Knee/T1/IM-0001-000%d.dcm' % (i + 1)) ['ID']) |
3e5934363e76
test_rest_find_limitµ
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
112
diff
changeset
|
3213 |
3e5934363e76
test_rest_find_limitµ
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
112
diff
changeset
|
3214 # Check using BRAINIX |
3e5934363e76
test_rest_find_limitµ
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
112
diff
changeset
|
3215 a = DoPost(_REMOTE, '/tools/find', { 'Level' : 'Instance', |
3e5934363e76
test_rest_find_limitµ
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
112
diff
changeset
|
3216 'Query' : { 'PatientName' : 'B*' }, |
3e5934363e76
test_rest_find_limitµ
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
112
diff
changeset
|
3217 'Limit' : 10 }) |
3e5934363e76
test_rest_find_limitµ
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
112
diff
changeset
|
3218 self.assertEqual(4, len(a)) |
3e5934363e76
test_rest_find_limitµ
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
112
diff
changeset
|
3219 |
3e5934363e76
test_rest_find_limitµ
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
112
diff
changeset
|
3220 a = DoPost(_REMOTE, '/tools/find', { 'Level' : 'Instance', |
3e5934363e76
test_rest_find_limitµ
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
112
diff
changeset
|
3221 'Query' : { 'PatientName' : 'B*' }, |
3e5934363e76
test_rest_find_limitµ
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
112
diff
changeset
|
3222 'Limit' : 4 }) |
3e5934363e76
test_rest_find_limitµ
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
112
diff
changeset
|
3223 self.assertEqual(4, len(a)) |
3e5934363e76
test_rest_find_limitµ
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
112
diff
changeset
|
3224 |
3e5934363e76
test_rest_find_limitµ
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
112
diff
changeset
|
3225 a = DoPost(_REMOTE, '/tools/find', { 'Level' : 'Instance', |
3e5934363e76
test_rest_find_limitµ
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
112
diff
changeset
|
3226 'Query' : { 'PatientName' : 'B*' }, |
3e5934363e76
test_rest_find_limitµ
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
112
diff
changeset
|
3227 'Since' : 2, |
3e5934363e76
test_rest_find_limitµ
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
112
diff
changeset
|
3228 'Limit' : 4 }) |
3e5934363e76
test_rest_find_limitµ
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
112
diff
changeset
|
3229 self.assertEqual(2, len(a)) |
3e5934363e76
test_rest_find_limitµ
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
112
diff
changeset
|
3230 |
3e5934363e76
test_rest_find_limitµ
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
112
diff
changeset
|
3231 a = DoPost(_REMOTE, '/tools/find', { 'Level' : 'Instance', |
3e5934363e76
test_rest_find_limitµ
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
112
diff
changeset
|
3232 'Query' : { 'PatientName' : 'B*' }, |
3e5934363e76
test_rest_find_limitµ
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
112
diff
changeset
|
3233 'Limit' : 3 }) |
3e5934363e76
test_rest_find_limitµ
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
112
diff
changeset
|
3234 self.assertEqual(3, len(a)) |
3e5934363e76
test_rest_find_limitµ
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
112
diff
changeset
|
3235 |
3e5934363e76
test_rest_find_limitµ
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
112
diff
changeset
|
3236 b = [] |
3e5934363e76
test_rest_find_limitµ
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
112
diff
changeset
|
3237 for i in range(4): |
3e5934363e76
test_rest_find_limitµ
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
112
diff
changeset
|
3238 a = DoPost(_REMOTE, '/tools/find', { 'Level' : 'Instance', |
3e5934363e76
test_rest_find_limitµ
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
112
diff
changeset
|
3239 'Query' : { 'PatientName' : 'B*' }, |
3e5934363e76
test_rest_find_limitµ
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
112
diff
changeset
|
3240 'Limit' : 1, |
3e5934363e76
test_rest_find_limitµ
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
112
diff
changeset
|
3241 'Since' : i }) |
3e5934363e76
test_rest_find_limitµ
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
112
diff
changeset
|
3242 self.assertEqual(1, len(a)) |
3e5934363e76
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Sebastien Jodogne <s.jodogne@gmail.com>
parents:
112
diff
changeset
|
3243 b.append(a[0]) |
3e5934363e76
test_rest_find_limitµ
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
112
diff
changeset
|
3244 |
3e5934363e76
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parents:
112
diff
changeset
|
3245 # Check whether the two sets are equal through symmetric difference |
3e5934363e76
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Sebastien Jodogne <s.jodogne@gmail.com>
parents:
112
diff
changeset
|
3246 self.assertEqual(0, len(set(b) ^ set(brainix))) |
3e5934363e76
test_rest_find_limitµ
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
112
diff
changeset
|
3247 |
3e5934363e76
test_rest_find_limitµ
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
112
diff
changeset
|
3248 # Check using KNEE |
3e5934363e76
test_rest_find_limitµ
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112
diff
changeset
|
3249 a = DoPost(_REMOTE, '/tools/find', { 'Level' : 'Instance', |
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Sebastien Jodogne <s.jodogne@gmail.com>
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112
diff
changeset
|
3250 'Query' : { 'PatientName' : 'K*' }, |
3e5934363e76
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112
diff
changeset
|
3251 'Limit' : 10 }) |
3e5934363e76
test_rest_find_limitµ
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diff
changeset
|
3252 self.assertEqual(2, len(a)) |
3e5934363e76
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Sebastien Jodogne <s.jodogne@gmail.com>
parents:
112
diff
changeset
|
3253 |
3e5934363e76
test_rest_find_limitµ
Sebastien Jodogne <s.jodogne@gmail.com>
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112
diff
changeset
|
3254 a = DoPost(_REMOTE, '/tools/find', { 'Level' : 'Instance', |
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diff
changeset
|
3255 'Query' : { 'PatientName' : 'K*' }, |
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112
diff
changeset
|
3256 'Limit' : 2 }) |
3e5934363e76
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diff
changeset
|
3257 self.assertEqual(2, len(a)) |
3e5934363e76
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112
diff
changeset
|
3258 |
3e5934363e76
test_rest_find_limitµ
Sebastien Jodogne <s.jodogne@gmail.com>
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diff
changeset
|
3259 b = [] |
3e5934363e76
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Sebastien Jodogne <s.jodogne@gmail.com>
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112
diff
changeset
|
3260 for i in range(2): |
3e5934363e76
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Sebastien Jodogne <s.jodogne@gmail.com>
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112
diff
changeset
|
3261 a = DoPost(_REMOTE, '/tools/find', { 'Level' : 'Instance', |
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diff
changeset
|
3262 'Query' : { 'PatientName' : 'K*' }, |
3e5934363e76
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112
diff
changeset
|
3263 'Limit' : 1, |
3e5934363e76
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Sebastien Jodogne <s.jodogne@gmail.com>
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diff
changeset
|
3264 'Since' : i }) |
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diff
changeset
|
3265 self.assertEqual(1, len(a)) |
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112
diff
changeset
|
3266 b.append(a[0]) |
3e5934363e76
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112
diff
changeset
|
3267 |
3e5934363e76
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Sebastien Jodogne <s.jodogne@gmail.com>
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112
diff
changeset
|
3268 self.assertEqual(0, len(set(b) ^ set(knee))) |
115
45ebfab035b7
test_bitbucket_issue_46
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diff
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|
3269 |
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3270 |
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3271 def test_bitbucket_issue_46(self): |
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3272 # "PHI remaining after anonymization" |
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3273 # https://bitbucket.org/sjodogne/orthanc/issues/46 |
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3274 |
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3275 def GetAnonymizedTags(study, version): |
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3276 anonymized = DoPost(_REMOTE, '/studies/%s/anonymize' % study, |
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3277 { 'DicomVersion' : version }, |
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3278 'application/json') ['ID'] |
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3279 a = DoGet(_REMOTE, '/studies/%s/instances' % anonymized) |
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3280 self.assertEqual(1, len(a)) |
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|
3281 |
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3282 instance = a[0]['ID'] |
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|
3283 |
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3284 return (instance, DoGet(_REMOTE, '/instances/%s/tags' % instance)) |
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|
3285 |
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3286 UploadInstance(_REMOTE, 'Issue44/Monochrome1.dcm') |
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3287 origStudy = '6068a14b-d4df27af-9ec22145-538772d8-74f228ff' |
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|
3288 |
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3289 # Add the 0032,1033 (Requesting Service) and the 0010,1060 |
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3290 # (Patient's Mother's Birth Name) tags |
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3291 newStudy = DoPost(_REMOTE, '/studies/%s/modify' % origStudy, |
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3292 '{"Replace":{"0010,1060":"OSIMIS","0032,1033":"MOTHER"}}', |
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3293 'application/json')['ID'] |
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|
3294 |
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3295 # Use Table E.1-1 from PS 3.15-2008 |
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3296 # https://raw.githubusercontent.com/jodogne/dicom-specification/master/2008/08_15pu.pdf |
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|
3297 (instance, tags) = GetAnonymizedTags(newStudy, "2008") |
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3298 self.assertTrue('0032,1033' in tags) |
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|
3299 self.assertTrue('0010,1060' in tags) |
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|
3300 |
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3301 # Use Table E.1-1 from PS 3.15-2011 (only if Orthanc >= 1.2.1) |
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3302 # https://raw.githubusercontent.com/jodogne/dicom-specification/master/2008/08_15pu.pdf |
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3303 (instance, tags) = GetAnonymizedTags(newStudy, "2017c") |
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3304 self.assertFalse('0032,1033' in tags) |
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3305 self.assertFalse('0010,1060' in tags) |
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|
3306 |
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3307 t = {} |
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3308 for (key, value) in tags.iteritems(): |
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3309 t[value['Name']] = value['Value'] |
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|
3310 |
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3311 self.assertEqual('', t['StudyDate']) # Type 1 tag => cleared |
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3312 self.assertEqual('', t['StudyTime']) # Type 1 tag => cleared |
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3313 self.assertEqual('', t['PatientSex']) # Type 1 tag => cleared |
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3314 self.assertFalse('SeriesDate' in t) # Type 3 tag => null |
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3315 self.assertFalse('SeriesTime' in t) # Type 3 tag => null |
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|
3316 |
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|
3317 with tempfile.NamedTemporaryFile(delete = True) as f: |
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3318 # Run "dciodvfy" on the anonymized file to be sure it is still valid |
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3319 f.write(DoGet(_REMOTE, '/instances/%s/file' % instance)) |
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3320 f.flush() |
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|
3321 subprocess.check_output([ FindExecutable('dciodvfy'), f.name ], |
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|
3322 stderr = subprocess.STDOUT).split('\n') |
118
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|
3323 |
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diff
changeset
|
3324 |
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|
3325 def test_bitbucket_issue_55(self): |
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3326 def Run(modify, query): |
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3327 self.assertEqual(1, len(DoGet(_REMOTE, '/instances'))) |
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|
3328 |
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|
3329 operation = 'modify' if modify else 'anonymize' |
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|
3330 |
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|
3331 self.assertRaises(Exception, lambda: DoPost( |
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3332 _REMOTE, '/studies/%s/%s' % (study, operation), query)) |
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3333 self.assertEqual(1, len(DoGet(_REMOTE, '/instances'))) |
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|
3334 |
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|
3335 query["Force"] = True |
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|
3336 a = DoPost(_REMOTE, '/studies/%s/%s' % (study, operation), query)['Path'] |
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3337 self.assertEqual(2, len(DoGet(_REMOTE, '/instances'))) |
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|
3338 DoDelete(_REMOTE, a) |
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|
3339 |
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|
3340 self.assertEqual(1, len(DoGet(_REMOTE, '/instances'))) |
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|
3341 |
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|
3342 UploadInstance(_REMOTE, 'DummyCT.dcm') |
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|
3343 study = 'b9c08539-26f93bde-c81ab0d7-bffaf2cb-a4d0bdd0' |
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|
3344 |
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|
3345 Run(True, { "Replace" : { "StudyInstanceUID" : "world" } }) |
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|
3346 Run(True, { "Replace" : { "SeriesInstanceUID" : "world" } }) |
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|
3347 Run(True, { "Replace" : { "SOPInstanceUID" : "world" } }) |
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|
3348 |
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|
3349 Run(False, { "Keep" : [ "StudyInstanceUID" ]}) |
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|
3350 Run(False, { "Keep" : [ "SeriesInstanceUID" ]}) |
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|
3351 Run(False, { "Keep" : [ "SOPInstanceUID" ]}) |
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|
3352 |
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|
3353 Run(False, { "Replace" : { "StudyInstanceUID" : "world" } }) |
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|
3354 Run(False, { "Replace" : { "SeriesInstanceUID" : "world" } }) |
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3355 Run(False, { "Replace" : { "SOPInstanceUID" : "world" } }) |
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|
3356 |
120
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|
3357 |
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|
3358 def test_bitbucket_issue_56(self): |
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3359 # Case-insensitive matching over accents. This test assumes |
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|
3360 # that the "CaseSensitivePN" configuration option of Orthanc |
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|
3361 # is set to "false" (default value). |
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|
3362 # https://bitbucket.org/sjodogne/orthanc/issues/56 |
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|
3363 |
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|
3364 def Check(name, expected, expectedSensitive): |
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|
3365 a = CallFindScu([ '-k', '0008,0005=ISO_IR 192', # Use UTF-8 |
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|
3366 '-k', '0008,0052=PATIENT', |
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|
3367 '-k', 'PatientName=%s' % name ]) |
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|
3368 patientNames = re.findall('\(0010,0010\).*?\[(.*?)\]', a) |
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|
3369 self.assertEqual(expected, len(patientNames)) |
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|
3370 |
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|
3371 a = DoPost(_REMOTE, '/tools/find', { 'Level' : 'Patient', |
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|
3372 'CaseSensitive' : False, |
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|
3373 'Query' : { 'PatientName' : name }}) |
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|
3374 self.assertEqual(expected, len(a)) |
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|
3375 |
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|
3376 a = DoPost(_REMOTE, '/tools/find', { 'Level' : 'Patient', |
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|
3377 'CaseSensitive' : True, |
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3378 'Query' : { 'PatientName' : name }}) |
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3379 self.assertEqual(expectedSensitive, len(a)) |
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3380 |
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3381 UploadInstance(_REMOTE, 'Encodings/Lena-latin1.dcm') |
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3382 |
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3383 # WildcardConstraint |
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3384 Check('TeSt*', 1, 0) |
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3385 Check('TeSt-a*', 0, 0) |
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3386 Check('TeSt-É*', 1, 0) |
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3387 Check('TeSt-é*', 1, 0) |
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3388 Check('Test-é*', 1, 1) |
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3389 |
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3390 # ListConstraint |
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3391 Check('Test-éüäöò\\nope', 1, 1) |
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3392 Check('Test-ÉÜÄÖÒ\\nope', 1, 0) |
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3393 |
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3394 # ValueConstraint |
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3395 Check('Test-éüäöò', 1, 1) |
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3396 Check('Test-ÉÜÄÖÒ', 1, 0) |
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3397 |