Mercurial > hg > orthanc-tests
annotate Tests/Tests.py @ 34:1047d7bc5210
test limit and since arguments while retrieving DICOM resources in the REST API
| author | Sebastien Jodogne <s.jodogne@gmail.com> |
|---|---|
| date | Mon, 10 Aug 2015 10:02:18 +0200 |
| parents | 156c7ae164b5 |
| children | 42ad759ef40a |
| rev | line source |
|---|---|
| 22 | 1 #!/usr/bin/env python |
| 2 # -*- coding: utf-8 -*- | |
| 3 | |
| 4 | |
| 3 | 5 # Orthanc - A Lightweight, RESTful DICOM Store |
| 6 # Copyright (C) 2012-2015 Sebastien Jodogne, Medical Physics | |
| 7 # Department, University Hospital of Liege, Belgium | |
| 8 # | |
| 9 # This program is free software: you can redistribute it and/or | |
| 10 # modify it under the terms of the GNU General Public License as | |
| 11 # published by the Free Software Foundation, either version 3 of the | |
| 12 # License, or (at your option) any later version. | |
| 13 # | |
| 14 # This program is distributed in the hope that it will be useful, but | |
| 15 # WITHOUT ANY WARRANTY; without even the implied warranty of | |
| 16 # MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU | |
| 17 # General Public License for more details. | |
| 18 # | |
| 19 # You should have received a copy of the GNU General Public License | |
| 20 # along with this program. If not, see <http://www.gnu.org/licenses/>. | |
| 21 | |
| 22 | |
| 14 | 23 import tempfile |
| 3 | 24 import unittest |
| 25 | |
| 11 | 26 from PIL import ImageChops |
| 3 | 27 from Toolbox import * |
| 13 | 28 from xml.dom import minidom |
| 3 | 29 |
| 30 _LOCAL = None | |
| 31 _REMOTE = None | |
| 32 | |
| 33 | |
| 34 def SetOrthancParameters(local, remote): | |
| 35 global _LOCAL, _REMOTE | |
| 36 _LOCAL = local | |
| 37 _REMOTE = remote | |
| 38 | |
| 39 | |
| 14 | 40 def ExtractDicomTags(rawDicom, tags): |
| 41 with tempfile.NamedTemporaryFile(delete = True) as f: | |
| 42 f.write(rawDicom) | |
| 43 f.flush() | |
| 44 data = subprocess.check_output([ 'dcm2xml', f.name ]) | |
| 45 | |
| 46 result = [] | |
| 47 for tag in tags: | |
| 48 match = re.search('<element[^>]+name="%s">([^>]*)</element>' % tag, data) | |
| 49 if match == None: | |
| 50 result.append('') | |
| 51 else: | |
| 52 result.append(match.group(1)) | |
| 53 | |
| 54 return result | |
| 55 | |
| 56 | |
| 15 | 57 def InstallLuaScript(path): |
| 58 with open(GetDatabasePath(path), 'r') as f: | |
| 59 DoPost(_REMOTE, '/tools/execute-script', f.read(), 'application/lua') | |
| 60 | |
| 61 | |
| 62 def UninstallLuaCallbacks(): | |
| 63 DoPost(_REMOTE, '/tools/execute-script', 'function OnStoredInstance() end', 'application/lua') | |
| 64 | |
| 65 | |
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66 def CompareLists(a, b): |
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67 if len(a) != len(b): |
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68 return False |
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69 |
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70 for i in range(len(a)): |
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71 d = a[i] - b[i] |
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72 if abs(d) >= 0.51: # Add some tolerance for rounding errors |
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73 return False |
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74 |
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75 return True |
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76 |
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77 |
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78 |
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79 |
| 15 | 80 |
| 3 | 81 class Orthanc(unittest.TestCase): |
| 82 def setUp(self): | |
| 83 DropOrthanc(_LOCAL) | |
| 84 DropOrthanc(_REMOTE) | |
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85 UninstallLuaCallbacks() |
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86 #print "In test", self._testMethodName |
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87 |
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88 def AssertSameImages(self, truth, url): |
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89 im = GetImage(_REMOTE, url) |
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90 self.assertTrue(CompareLists(truth, im.getdata())) |
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91 |
| 3 | 92 |
| 93 def test_system(self): | |
| 94 self.assertTrue('Version' in DoGet(_REMOTE, '/system')) | |
| 95 self.assertEqual('0', DoGet(_REMOTE, '/statistics')['TotalDiskSize']) | |
| 96 self.assertEqual('0', DoGet(_REMOTE, '/statistics')['TotalUncompressedSize']) | |
| 97 | |
| 98 def test_upload(self): | |
| 99 u = UploadInstance(_REMOTE, 'DummyCT.dcm') | |
| 100 self.assertEqual('Success', u['Status']) | |
| 101 u = UploadInstance(_REMOTE, 'DummyCT.dcm') | |
| 102 self.assertEqual('AlreadyStored', u['Status']) | |
| 103 self.assertEqual(1, len(DoGet(_REMOTE, '/patients'))) | |
| 104 self.assertEqual(1, len(DoGet(_REMOTE, '/studies'))) | |
| 105 self.assertEqual(1, len(DoGet(_REMOTE, '/series'))) | |
| 106 self.assertEqual(1, len(DoGet(_REMOTE, '/instances'))) | |
| 107 | |
| 108 i = DoGet(_REMOTE, '/instances/%s/simplified-tags' % u['ID']) | |
| 109 self.assertEqual('20070101', i['StudyDate']) | |
| 110 | |
| 111 | |
| 5 | 112 def test_upload_2(self): |
| 3 | 113 i = UploadInstance(_REMOTE, 'DummyCT.dcm')['ID'] |
| 114 instance = DoGet(_REMOTE, '/instances/%s' % i) | |
| 115 self.assertEqual(i, instance['ID']) | |
| 116 self.assertEqual('1.2.840.113619.2.176.2025.1499492.7040.1171286242.109', | |
| 117 instance['MainDicomTags']['SOPInstanceUID']) | |
| 118 | |
| 119 series = DoGet(_REMOTE, '/series/%s' % instance['ParentSeries']) | |
| 120 self.assertEqual('1.2.840.113619.2.176.2025.1499492.7391.1171285944.394', | |
| 121 series['MainDicomTags']['SeriesInstanceUID']) | |
| 122 | |
| 123 study = DoGet(_REMOTE, '/studies/%s' % series['ParentStudy']) | |
| 124 self.assertEqual('1.2.840.113619.2.176.2025.1499492.7391.1171285944.390', | |
| 125 study['MainDicomTags']['StudyInstanceUID']) | |
| 126 | |
| 127 patient = DoGet(_REMOTE, '/patients/%s' % study['ParentPatient']) | |
| 128 self.assertEqual('ozp00SjY2xG', | |
| 129 patient['MainDicomTags']['PatientID']) | |
| 130 | |
| 131 dicom = DoGet(_REMOTE, '/instances/%s/file' % instance['ID']) | |
| 132 self.assertEqual(2472, len(dicom)) | |
| 133 self.assertEqual('3e29b869978b6db4886355a2b1132124', ComputeMD5(dicom)) | |
| 134 self.assertEqual(1, len(DoGet(_REMOTE, '/instances/%s/frames' % i))) | |
| 135 self.assertEqual('TWINOW', DoGet(_REMOTE, '/instances/%s/simplified-tags' % i)['StationName']) | |
| 136 self.assertEqual('TWINOW', DoGet(_REMOTE, '/instances/%s/tags' % i)['0008,1010']['Value']) | |
| 137 | |
| 138 | |
| 5 | 139 def test_images(self): |
| 140 i = UploadInstance(_REMOTE, 'Phenix/IM-0001-0001.dcm')['ID'] | |
| 141 self.assertEqual(1, len(DoGet(_REMOTE, '/instances/%s/frames' % i))) | |
| 3 | 142 |
| 5 | 143 im = GetImage(_REMOTE, '/instances/%s/preview' % i) |
| 144 self.assertEqual("L", im.mode) | |
| 145 self.assertEqual(512, im.size[0]) | |
| 146 self.assertEqual(358, im.size[1]) | |
| 147 | |
| 148 im = GetImage(_REMOTE, '/instances/%s/image-uint8' % i) | |
| 149 self.assertEqual("L", im.mode) | |
| 150 self.assertEqual(512, im.size[0]) | |
| 151 self.assertEqual(358, im.size[1]) | |
| 152 | |
| 153 im = GetImage(_REMOTE, '/instances/%s/image-uint16' % i) | |
| 154 self.assertEqual(512, im.size[0]) | |
| 155 self.assertEqual(358, im.size[1]) | |
| 156 | |
| 157 im = GetImage(_REMOTE, '/instances/%s/frames/0/preview' % i) | |
| 158 self.assertEqual("L", im.mode) | |
| 159 self.assertEqual(512, im.size[0]) | |
| 160 self.assertEqual(358, im.size[1]) | |
| 161 | |
| 162 im = GetImage(_REMOTE, '/instances/%s/frames/0/image-uint8' % i) | |
| 163 self.assertEqual("L", im.mode) | |
| 164 self.assertEqual(512, im.size[0]) | |
| 165 self.assertEqual(358, im.size[1]) | |
| 166 | |
| 167 im = GetImage(_REMOTE, '/instances/%s/frames/0/image-uint16' % i) | |
| 168 self.assertEqual(512, im.size[0]) | |
| 169 self.assertEqual(358, im.size[1]) | |
| 170 | |
| 6 | 171 |
| 172 def test_hierarchy(self): | |
| 173 UploadFolder(_REMOTE, 'Brainix/Epi') | |
| 174 UploadFolder(_REMOTE, 'Brainix/Flair') | |
| 175 UploadFolder(_REMOTE, 'Knee/T1') | |
| 176 UploadFolder(_REMOTE, 'Knee/T2') | |
| 177 | |
| 178 p = DoGet(_REMOTE, '/patients') | |
| 179 s = DoGet(_REMOTE, '/studies') | |
| 180 t = DoGet(_REMOTE, '/series') | |
| 181 self.assertEqual(2, len(p)) | |
| 182 self.assertEqual(2, len(s)) | |
| 183 self.assertEqual(4, len(t)) | |
| 184 self.assertEqual(94, len(DoGet(_REMOTE, '/instances'))) | |
| 185 | |
| 186 brainixPatient = '16738bc3-e47ed42a-43ce044c-a3414a45-cb069bd0' | |
| 187 brainixStudy = '27f7126f-4f66fb14-03f4081b-f9341db2-53925988' | |
| 188 brainixEpi = '2ac1316d-3e432022-62eabff2-c59f5475-9b1ac3f8' | |
| 189 brainixFlair = '1e2c125c-411b8e86-3f4fe68e-a7584dd3-c6da78f0' | |
| 190 | |
| 191 kneePatient = 'ca29faea-b6a0e17f-067743a1-8b778011-a48b2a17' | |
| 192 kneeStudy = '0a9b3153-2512774b-2d9580de-1fc3dcf6-3bd83918' | |
| 193 kneeT1 = '6de73705-c4e65c1b-9d9ea1b5-cabcd8e7-f15e4285' | |
| 194 kneeT2 = 'bbf7a453-0d34251a-03663b55-46bb31b9-ffd74c59' | |
| 195 | |
| 196 self.assertTrue(brainixPatient in p) | |
| 197 self.assertTrue(kneePatient in p) | |
| 198 self.assertTrue(brainixStudy in s) | |
| 199 self.assertTrue(kneeStudy in s) | |
| 200 self.assertTrue(brainixEpi in t) | |
| 201 self.assertTrue(brainixFlair in t) | |
| 202 self.assertTrue(kneeT1 in t) | |
| 203 self.assertTrue(kneeT2 in t) | |
| 204 | |
| 205 self.assertEqual(44, len(DoGet(_REMOTE, '/patients/%s/instances' % brainixPatient))) | |
| 206 self.assertEqual(2, len(DoGet(_REMOTE, '/patients/%s/series' % brainixPatient))) | |
| 207 self.assertEqual(1, len(DoGet(_REMOTE, '/patients/%s/studies' % brainixPatient))) | |
| 208 | |
| 209 self.assertEqual(50, len(DoGet(_REMOTE, '/patients/%s/instances' % kneePatient))) | |
| 210 self.assertEqual(2, len(DoGet(_REMOTE, '/patients/%s/series' % kneePatient))) | |
| 211 self.assertEqual(1, len(DoGet(_REMOTE, '/patients/%s/studies' % kneePatient))) | |
| 212 | |
| 213 self.assertEqual(2, len(DoGet(_REMOTE, '/studies/%s/series' % brainixStudy))) | |
| 214 self.assertEqual(44, len(DoGet(_REMOTE, '/studies/%s/instances' % brainixStudy))) | |
| 215 | |
| 216 self.assertEqual(2, len(DoGet(_REMOTE, '/studies/%s/series' % kneeStudy))) | |
| 217 self.assertEqual(50, len(DoGet(_REMOTE, '/studies/%s/instances' % kneeStudy))) | |
| 218 | |
| 219 self.assertEqual(22, len(DoGet(_REMOTE, '/series/%s/instances' % brainixEpi))) | |
| 220 self.assertEqual(22, len(DoGet(_REMOTE, '/series/%s/instances' % brainixFlair))) | |
| 221 self.assertEqual(24, len(DoGet(_REMOTE, '/series/%s/instances' % kneeT1))) | |
| 222 self.assertEqual(26, len(DoGet(_REMOTE, '/series/%s/instances' % kneeT2))) | |
| 223 | |
| 224 for patient in p: | |
| 225 for study in DoGet(_REMOTE, '/patients/%s/studies' % patient): | |
| 226 self.assertEqual(patient, study['ParentPatient']) | |
| 227 for series in DoGet(_REMOTE, '/studies/%s/series' % study['ID']): | |
| 228 self.assertEqual(study['ID'], series['ParentStudy']) | |
| 229 for instance in DoGet(_REMOTE, '/series/%s/instances' % series['ID']): | |
| 230 self.assertEqual(series['ID'], instance['ParentSeries']) | |
| 231 | |
| 232 self.assertEqual(json.dumps(DoGet(_REMOTE, '/instances/%s/attachments/dicom-as-json/data' % instance['ID'])), | |
| 233 json.dumps(DoGet(_REMOTE, '/instances/%s/tags' % instance['ID']))) | |
| 234 | |
| 235 | |
| 236 r = DoDelete(_REMOTE, "/studies/%s" % brainixStudy)['RemainingAncestor'] | |
| 237 self.assertEqual(1, len(DoGet(_REMOTE, '/patients'))) | |
| 238 self.assertEqual(1, len(DoGet(_REMOTE, '/studies'))) | |
| 239 self.assertEqual(2, len(DoGet(_REMOTE, '/series'))) | |
| 240 self.assertEqual(50, len(DoGet(_REMOTE, '/instances'))) | |
| 241 self.assertEqual(None, r) | |
| 242 | |
| 243 r = DoDelete(_REMOTE, "/series/%s" % kneeT2)['RemainingAncestor'] | |
| 244 self.assertEqual(1, len(DoGet(_REMOTE, '/patients'))) | |
| 245 self.assertEqual(1, len(DoGet(_REMOTE, '/studies'))) | |
| 246 self.assertEqual(1, len(DoGet(_REMOTE, '/series'))) | |
| 247 self.assertEqual(24, len(DoGet(_REMOTE, '/instances'))) | |
| 248 self.assertEqual('Study', r['Type']) | |
| 249 self.assertEqual(kneeStudy, r['ID']) | |
| 250 | |
| 251 r = DoDelete(_REMOTE, "/instances/%s" % DoGet(_REMOTE, '/instances')[0])['RemainingAncestor'] | |
| 252 self.assertEqual(1, len(DoGet(_REMOTE, '/patients'))) | |
| 253 self.assertEqual(1, len(DoGet(_REMOTE, '/studies'))) | |
| 254 self.assertEqual(1, len(DoGet(_REMOTE, '/series'))) | |
| 255 self.assertEqual(23, len(DoGet(_REMOTE, '/instances'))) | |
| 256 self.assertEqual('Series', r['Type']) | |
| 257 self.assertEqual(kneeT1, r['ID']) | |
| 258 | |
| 259 r = DoDelete(_REMOTE, "/patients/%s" % kneePatient)['RemainingAncestor'] | |
| 260 self.assertEqual(0, len(DoGet(_REMOTE, '/patients'))) | |
| 261 self.assertEqual(0, len(DoGet(_REMOTE, '/studies'))) | |
| 262 self.assertEqual(0, len(DoGet(_REMOTE, '/series'))) | |
| 263 self.assertEqual(0, len(DoGet(_REMOTE, '/instances'))) | |
| 264 self.assertEqual(None, r) | |
| 265 | |
| 266 DropOrthanc(_REMOTE) | |
| 267 self.assertEqual('0', DoGet(_REMOTE, '/statistics')['TotalDiskSize']) | |
| 268 self.assertEqual('0', DoGet(_REMOTE, '/statistics')['TotalUncompressedSize']) | |
| 7 | 269 |
| 270 | |
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271 def test_multiframe(self): |
| 7 | 272 i = UploadInstance(_REMOTE, 'Multiframe.dcm')['ID'] |
| 273 self.assertEqual(76, len(DoGet(_REMOTE, '/instances/%s/frames' % i))) | |
| 274 | |
| 275 im = GetImage(_REMOTE, '/instances/%s/frames/0/preview' % i) | |
| 276 self.assertEqual("L", im.mode) | |
| 277 self.assertEqual(512, im.size[0]) | |
| 278 self.assertEqual(512, im.size[1]) | |
| 279 | |
| 280 DoGet(_REMOTE, '/instances/%s/frames/0/image-uint8' % i) | |
| 281 DoGet(_REMOTE, '/instances/%s/frames/0/image-uint16' % i) | |
| 282 DoGet(_REMOTE, '/instances/%s/frames/75/preview' % i) | |
| 283 self.assertRaises(Exception, lambda: DoGet(_REMOTE, '/instances/%s/frames/aaa/preview' % i)) | |
| 284 self.assertRaises(Exception, lambda: DoGet(_REMOTE, '/instances/%s/frames/76/preview' % i)) | |
| 285 | |
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286 |
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287 def test_changes(self): |
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288 # Check emptiness |
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289 c = DoGet(_REMOTE, '/changes') |
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290 self.assertEqual(0, len(c['Changes'])) |
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291 self.assertEqual(0, c['Last']) |
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292 self.assertTrue(c['Done']) |
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293 c = DoGet(_REMOTE, '/changes?last') |
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294 self.assertEqual(0, len(c['Changes'])) |
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295 self.assertEqual(0, c['Last']) |
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296 self.assertTrue(c['Done']) |
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297 |
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298 # Add 1 instance |
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299 i = UploadInstance(_REMOTE, 'Brainix/Flair/IM-0001-0001.dcm')['ID'] |
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300 c = DoGet(_REMOTE, '/changes') |
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301 begin = c['Last'] |
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302 self.assertEqual(4, len(c['Changes'])) |
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303 self.assertTrue(c['Done']) |
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304 self.assertEqual(c['Changes'][-1]['Seq'], c['Last']) |
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305 |
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306 c = DoGet(_REMOTE, '/changes?last') |
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307 self.assertEqual(1, len(c['Changes'])) |
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308 self.assertEqual(begin, c['Last']) |
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309 self.assertTrue(c['Done']) |
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310 c = DoGet(_REMOTE, '/changes?limit=1&since=' + str(begin - 1)) |
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311 self.assertEqual(1, len(c['Changes'])) |
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312 self.assertEqual(begin, c['Last']) |
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313 self.assertTrue(c['Done']) |
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314 c = DoGet(_REMOTE, '/changes?limit=1&since=' + str(begin - 2)) |
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315 self.assertEqual(1, len(c['Changes'])) |
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316 self.assertEqual(begin - 1, c['Last']) |
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317 self.assertFalse(c['Done']) |
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318 c = DoGet(_REMOTE, '/changes?limit=1&since=' + str(begin - 3)) |
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319 self.assertEqual(1, len(c['Changes'])) |
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320 self.assertEqual(begin - 2, c['Last']) |
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321 self.assertFalse(c['Done']) |
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322 |
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323 UploadFolder(_REMOTE, 'Knee/T1') |
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324 UploadFolder(_REMOTE, 'Knee/T2') |
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325 since = begin |
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326 countPatients = 0 |
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327 countStudies = 0 |
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328 countSeries = 0 |
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329 countInstances = 0 |
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330 completed = 0 |
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331 while True: |
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332 c = DoGet(_REMOTE, '/changes', { 'since' : since, 'limit' : 3 }) |
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333 since = c['Last'] |
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334 for i in c['Changes']: |
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335 if i['ResourceType'] == 'Instance': |
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336 countInstances += 1 |
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337 if i['ResourceType'] == 'Patient': |
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338 countPatients += 1 |
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339 if i['ResourceType'] == 'Study': |
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340 countStudies += 1 |
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341 if i['ResourceType'] == 'Series': |
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342 countSeries += 1 |
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343 if i['ChangeType'] == 'NewInstance': |
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344 countInstances += 1 |
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345 if i['ChangeType'] == 'NewPatient': |
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346 countPatients += 1 |
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347 if i['ChangeType'] == 'NewStudy': |
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348 countStudies += 1 |
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349 if i['ChangeType'] == 'NewSeries': |
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350 countSeries += 1 |
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351 if i['ChangeType'] == 'CompletedSeries': |
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352 completed += 1 |
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353 self.assertTrue('ID' in i) |
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354 self.assertTrue('Path' in i) |
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355 self.assertTrue('Seq' in i) |
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356 if c['Done']: |
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357 break |
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358 |
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359 self.assertEqual(2 * 50, countInstances) |
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360 self.assertEqual(2 * 1, countPatients) |
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361 self.assertEqual(2 * 1, countStudies) |
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362 self.assertEqual(2 * 2, countSeries) |
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363 self.assertEqual(0, completed) |
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364 |
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|
365 |
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366 def test_archive(self): |
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367 UploadInstance(_REMOTE, 'Knee/T1/IM-0001-0001.dcm') |
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368 UploadInstance(_REMOTE, 'Knee/T2/IM-0001-0001.dcm') |
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369 |
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370 z = GetArchive(_REMOTE, '/patients/%s/archive' % DoGet(_REMOTE, '/patients')[0]) |
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371 self.assertEqual(2, len(z.namelist())) |
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|
372 |
|
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373 z = GetArchive(_REMOTE, '/studies/%s/archive' % DoGet(_REMOTE, '/studies')[0]) |
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374 self.assertEqual(2, len(z.namelist())) |
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|
375 |
|
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376 z = GetArchive(_REMOTE, '/series/%s/archive' % DoGet(_REMOTE, '/series')[0]) |
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377 self.assertEqual(1, len(z.namelist())) |
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|
378 |
|
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379 UploadInstance(_REMOTE, 'Brainix/Flair/IM-0001-0001.dcm') |
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|
380 |
|
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381 z = GetArchive(_REMOTE, '/patients/%s/archive' % DoGet(_REMOTE, '/patients')[0]) |
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382 self.assertEqual(2, len(z.namelist())) |
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changeset
|
383 |
|
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changeset
|
384 |
|
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385 def test_media_archive(self): |
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386 UploadInstance(_REMOTE, 'Knee/T1/IM-0001-0001.dcm') |
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387 UploadInstance(_REMOTE, 'Knee/T2/IM-0001-0001.dcm') |
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|
388 |
|
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389 z = GetArchive(_REMOTE, '/patients/%s/media' % DoGet(_REMOTE, '/patients')[0]) |
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390 self.assertEqual(3, len(z.namelist())) |
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391 self.assertTrue('IMAGES/IM0' in z.namelist()) |
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392 self.assertTrue('IMAGES/IM1' in z.namelist()) |
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393 self.assertTrue('DICOMDIR' in z.namelist()) |
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changeset
|
394 |
|
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changeset
|
395 try: |
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|
396 os.remove('/tmp/DICOMDIR') |
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changeset
|
397 except: |
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changeset
|
398 # The file does not exist |
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changeset
|
399 pass |
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changeset
|
400 |
|
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changeset
|
401 z.extract('DICOMDIR', '/tmp') |
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changeset
|
402 a = subprocess.check_output([ 'dciodvfy', '/tmp/DICOMDIR' ], |
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changeset
|
403 stderr = subprocess.STDOUT).split('\n') |
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changeset
|
404 self.assertEqual(3, len(a)) |
|
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changeset
|
405 self.assertTrue(a[0].startswith('Warning')) |
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406 self.assertEqual('BasicDirectory', a[1]) |
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407 self.assertEqual('', a[2]) |
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408 |
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409 a = subprocess.check_output([ 'dcentvfy', '/tmp/DICOMDIR' ], |
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410 stderr = subprocess.STDOUT).split('\n') |
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411 self.assertEqual(1, len(a)) |
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412 self.assertEqual('', a[0]) |
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413 |
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414 a = subprocess.check_output([ 'dcm2xml', '/tmp/DICOMDIR' ]) |
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415 self.assertTrue(re.search('1.3.46.670589.11.17521.5.0.3124.2008081908590448738', a) != None) |
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416 self.assertTrue(re.search('1.3.46.670589.11.17521.5.0.3124.2008081909113806560', a) != None) |
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417 |
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418 os.remove('/tmp/DICOMDIR') |
| 10 | 419 |
| 420 | |
| 421 def test_protection(self): | |
| 422 UploadInstance(_REMOTE, 'Knee/T1/IM-0001-0001.dcm') | |
| 423 UploadInstance(_REMOTE, 'Brainix/Flair/IM-0001-0001.dcm') | |
| 424 self.assertEqual(2, len(DoGet(_REMOTE, '/patients'))) | |
| 425 a = DoGet(_REMOTE, '/patients')[0] | |
| 426 b = DoGet(_REMOTE, '/patients')[1] | |
| 427 self.assertEqual(0, DoGet(_REMOTE, '/patients/%s/protected' % a)) | |
| 428 DoPut(_REMOTE, '/patients/%s/protected' % a, '0', 'text/plain') | |
| 429 self.assertEqual(0, DoGet(_REMOTE, '/patients/%s/protected' % a)) | |
| 430 DoPut(_REMOTE, '/patients/%s/protected' % a, '1', 'text/plain') | |
| 431 self.assertEqual(1, DoGet(_REMOTE, '/patients/%s/protected' % a)) | |
| 432 DoPut(_REMOTE, '/patients/%s/protected' % a, '0', 'text/plain') | |
| 433 self.assertEqual(0, DoGet(_REMOTE, '/patients/%s/protected' % a)) | |
| 434 | |
| 435 | |
| 12 | 436 def test_raw_tags(self): |
| 10 | 437 i = UploadInstance(_REMOTE, 'PrivateTags.dcm')['ID'] |
| 438 | |
| 439 dicom = DoGet(_REMOTE, '/instances/%s/file' % i) | |
| 440 self.assertEqual('1a7c56cb02d6e742cc9c856a8ac182e3', ComputeMD5(dicom)) | |
| 441 | |
| 442 s = '/instances/%s/content/' % i | |
| 443 | |
| 444 self.assertEqual('LOGIQBOOK', DoGet(_REMOTE, s + '0008-1010').strip()) | |
| 445 self.assertRaises(Exception, lambda: DoGet(_REMOTE, s + '0008-1011')) | |
| 446 | |
| 447 self.assertEqual('Abdomen', DoGet(_REMOTE, s + '7fe1-1001/0/7fe1-1008/0/7fe1-1057').strip()) | |
| 448 self.assertEqual('cla_3c', DoGet(_REMOTE, s + '7fe1-1001/0/7fe1-1008/8/7fe1-1057').strip()) | |
| 449 | |
| 450 UploadInstance(_REMOTE, 'Brainix/Epi/IM-0001-0001.dcm') | |
| 451 UploadInstance(_REMOTE, 'Brainix/Flair/IM-0001-0001.dcm') | |
| 452 UploadInstance(_REMOTE, 'Knee/T1/IM-0001-0001.dcm') | |
| 453 UploadInstance(_REMOTE, 'Knee/T2/IM-0001-0001.dcm') | |
| 454 | |
| 455 for i in DoGet(_REMOTE, '/instances'): | |
| 456 aid = DoGet(_REMOTE, '/instances/%s' % i)['MainDicomTags']['SOPInstanceUID'] | |
| 457 self.assertEqual(aid, DoGet(_REMOTE, '/instances/%s/content/0008-0018' % i).replace(chr(0), '')) | |
| 458 | |
| 459 | |
| 460 def test_raw_tags_mdn(self): | |
| 461 # Bug reported by Cyril Paulus | |
| 462 i = UploadInstance(_REMOTE, 'PrivateMDNTags.dcm')['ID'] | |
| 463 self.assertAlmostEqual(0.000027, DoGet(_REMOTE, '/instances/%s/content/7053-1000' % i)) | |
| 464 | |
| 465 | |
| 466 def test_modify_instance(self): | |
| 467 i = UploadInstance(_REMOTE, 'PrivateTags.dcm')['ID'] | |
| 468 modified = DoPost(_REMOTE, '/instances/%s/modify' % i, | |
| 469 json.dumps({ | |
| 470 "Replace" : { | |
| 471 "PatientName" : "hello", | |
| 472 #"PatientID" : "world" | |
| 473 }, | |
| 474 "Remove" : [ "StationName" ], | |
| 475 "RemovePrivateTags" : None | |
| 476 }), | |
| 477 'application/json') | |
| 478 j = DoPost(_REMOTE, '/instances', modified, 'application/dicom')['ID'] | |
| 479 | |
| 480 self.assertNotEqual('hello', DoGet(_REMOTE, '/instances/%s/content/0010-0010' % i).strip()) | |
| 481 #self.assertNotEqual('world', DoGet(_REMOTE, '/instances/%s/content/0010-0020' % i).strip()) | |
| 482 self.assertEqual('LOGIQBOOK', DoGet(_REMOTE, '/instances/%s/content/0008-1010' % i).strip()) | |
| 483 DoGet(_REMOTE, '/instances/%s/content/6003-1010' % i) # Some private tag | |
| 484 | |
| 485 self.assertEqual('hello', DoGet(_REMOTE, '/instances/%s/content/0010-0010' % j).strip()) | |
| 486 #self.assertEqual('world', DoGet(_REMOTE, '/instances/%s/content/0010-0020' % j).strip()) | |
| 487 self.assertRaises(Exception, lambda: DoGet(_REMOTE, '/instances/%s/content/0008-1010' % j)) | |
| 488 self.assertRaises(Exception, lambda: DoGet(_REMOTE, '/instances/%s/content/6003-1010' % j)) | |
| 489 | |
| 490 | |
| 491 def test_modify_series(self): | |
| 492 # Upload 4 images from the same series | |
| 493 for i in range(4): | |
| 494 UploadInstance(_REMOTE, 'Brainix/Epi/IM-0001-000%d.dcm' % (i + 1)) | |
| 495 | |
| 496 origSeries = DoGet(_REMOTE, '/series')[0] | |
| 497 newSeries = DoPost(_REMOTE, '/series/%s/modify' % origSeries, | |
| 498 '{"Replace":{"PatientName":"Jodogne"}}', | |
| 499 'application/json')['ID'] | |
| 500 | |
| 501 self.assertEqual(origSeries, DoGet(_REMOTE, '/series/%s' % newSeries)['ModifiedFrom']) | |
| 502 instances = DoGet(_REMOTE, '/series/%s' % newSeries)['Instances'] | |
| 503 self.assertEqual(4, len(instances)) | |
| 504 for i in instances: | |
| 505 j = DoGet(_REMOTE, '/instances/%s' % i)['ModifiedFrom'] | |
| 506 self.assertEqual(newSeries, DoGet(_REMOTE, '/instances/%s' % i)['ParentSeries']) | |
| 507 self.assertEqual(origSeries, DoGet(_REMOTE, '/instances/%s' % j)['ParentSeries']) | |
| 508 | |
| 509 self.assertEqual('Jodogne', DoGet(_REMOTE, '/instances/%s/content/0010-0010' % i).strip()) | |
| 510 self.assertNotEqual('Jodogne', DoGet(_REMOTE, '/instances/%s/content/0010-0010' % j).strip()) | |
| 511 | |
| 512 | |
| 513 def test_modify_study(self): | |
| 514 # Upload 4 images from the 2 series of the same study | |
| 515 for i in range(4): | |
| 516 UploadInstance(_REMOTE, 'Brainix/Flair/IM-0001-000%d.dcm' % (i + 1)) | |
| 517 UploadInstance(_REMOTE, 'Brainix/Epi/IM-0001-000%d.dcm' % (i + 1)) | |
| 518 | |
| 519 origStudy = DoGet(_REMOTE, '/studies')[0] | |
| 520 newStudy = DoPost(_REMOTE, '/studies/%s/modify' % origStudy, | |
| 521 '{"Replace":{"PatientName":"Jodogne"}}', | |
| 522 'application/json')['ID'] | |
| 523 | |
| 524 self.assertEqual(origStudy, DoGet(_REMOTE, '/studies/%s' % newStudy)['ModifiedFrom']) | |
| 525 series = DoGet(_REMOTE, '/studies/%s' % newStudy)['Series'] | |
| 526 self.assertEqual(2, len(series)) | |
| 527 for s in series: | |
| 528 ss = DoGet(_REMOTE, '/series/%s' % s)['ModifiedFrom'] | |
| 529 self.assertEqual(newStudy, DoGet(_REMOTE, '/series/%s' % s)['ParentStudy']) | |
| 530 self.assertEqual(origStudy, DoGet(_REMOTE, '/series/%s' % ss)['ParentStudy']) | |
| 531 | |
| 532 instances = DoGet(_REMOTE, '/series/%s' % s)['Instances'] | |
| 533 for i in instances: | |
| 534 j = DoGet(_REMOTE, '/instances/%s' % i)['ModifiedFrom'] | |
| 535 self.assertEqual(s, DoGet(_REMOTE, '/instances/%s' % i)['ParentSeries']) | |
| 536 self.assertEqual(ss, DoGet(_REMOTE, '/instances/%s' % j)['ParentSeries']) | |
| 537 | |
| 538 self.assertEqual('Jodogne', DoGet(_REMOTE, '/instances/%s/content/0010-0010' % i).strip()) | |
| 539 self.assertNotEqual('Jodogne', DoGet(_REMOTE, '/instances/%s/content/0010-0010' % j).strip()) | |
| 540 | |
| 541 | |
| 542 def test_anonymize_series(self): | |
| 543 # Upload 4 images from the same series | |
| 544 for i in range(4): | |
| 545 UploadInstance(_REMOTE, 'Brainix/Epi/IM-0001-000%d.dcm' % (i + 1)) | |
| 546 | |
| 547 origSeries = DoGet(_REMOTE, '/series')[0] | |
| 548 newSeries = DoPost(_REMOTE, '/series/%s/anonymize' % origSeries, | |
| 549 '{}', | |
| 550 'application/json')['ID'] | |
| 551 | |
| 552 self.assertEqual(origSeries, DoGet(_REMOTE, '/series/%s' % newSeries)['AnonymizedFrom']) | |
| 553 instances = DoGet(_REMOTE, '/series/%s' % newSeries)['Instances'] | |
| 554 self.assertEqual(4, len(instances)) | |
| 555 for i in instances: | |
| 556 j = DoGet(_REMOTE, '/instances/%s' % i)['AnonymizedFrom'] | |
| 557 self.assertEqual(newSeries, DoGet(_REMOTE, '/instances/%s' % i)['ParentSeries']) | |
| 558 self.assertEqual(origSeries, DoGet(_REMOTE, '/instances/%s' % j)['ParentSeries']) | |
| 559 | |
| 560 DoGet(_REMOTE, '/instances/%s/content/0008-1010' % j) | |
| 561 self.assertRaises(Exception, lambda: DoGet(_REMOTE, '/instances/%s/content/0008-1010' % i)) | |
| 562 | |
| 563 | |
| 564 def test_anonymize_study(self): | |
| 565 # Upload 4 images from the 2 series of the same study | |
| 566 for i in range(4): | |
| 567 UploadInstance(_REMOTE, 'Brainix/Flair/IM-0001-000%d.dcm' % (i + 1)) | |
| 568 UploadInstance(_REMOTE, 'Brainix/Epi/IM-0001-000%d.dcm' % (i + 1)) | |
| 569 | |
| 570 origStudy = DoGet(_REMOTE, '/studies')[0] | |
| 571 newStudy = DoPost(_REMOTE,'/studies/%s/anonymize' % origStudy, | |
| 572 '{"Replace":{"PatientName":"Jodogne"}}', | |
| 573 'application/json')['ID'] | |
| 574 | |
| 575 self.assertEqual(origStudy, DoGet(_REMOTE, '/studies/%s' % newStudy)['AnonymizedFrom']) | |
| 576 series = DoGet(_REMOTE, '/studies/%s' % newStudy)['Series'] | |
| 577 self.assertEqual(2, len(series)) | |
| 578 for s in series: | |
| 579 ss = DoGet(_REMOTE, '/series/%s' % s)['AnonymizedFrom'] | |
| 580 self.assertEqual(newStudy, DoGet(_REMOTE, '/series/%s' % s)['ParentStudy']) | |
| 581 self.assertEqual(origStudy, DoGet(_REMOTE, '/series/%s' % ss)['ParentStudy']) | |
| 582 | |
| 583 instances = DoGet(_REMOTE, '/series/%s' % s)['Instances'] | |
| 584 for i in instances: | |
| 585 j = DoGet(_REMOTE, '/instances/%s' % i)['AnonymizedFrom'] | |
| 586 self.assertEqual(s, DoGet(_REMOTE, '/instances/%s' % i)['ParentSeries']) | |
| 587 self.assertEqual(ss, DoGet(_REMOTE, '/instances/%s' % j)['ParentSeries']) | |
| 588 | |
| 589 self.assertEqual('Jodogne', DoGet(_REMOTE, '/instances/%s/content/0010-0010' % i).strip()) | |
| 590 self.assertNotEqual('Jodogne', DoGet(_REMOTE, '/instances/%s/content/0010-0010' % j).strip()) | |
| 11 | 591 |
| 592 | |
| 593 | |
| 594 def test_storescu(self): | |
| 595 # Check emptiness | |
| 596 e = DoGet(_REMOTE, '/exports') | |
| 597 self.assertEqual(0, len(e['Exports'])) | |
| 598 self.assertEqual(0, e['Last']) | |
| 599 self.assertTrue(e['Done']) | |
| 600 e = DoGet(_REMOTE, '/exports?last') | |
| 601 self.assertEqual(0, len(e['Exports'])) | |
| 602 self.assertEqual(0, e['Last']) | |
| 603 self.assertTrue(e['Done']) | |
| 604 | |
| 605 # Add 1 instance | |
| 606 i = UploadInstance(_REMOTE, 'DummyCT.dcm')['ID'] | |
| 607 self.assertEqual(0, len(DoGet(_LOCAL, '/patients'))) | |
| 608 | |
| 609 # Export the instance | |
| 610 j = DoPost(_REMOTE, '/modalities/orthanctest/store', str(i), 'text/plain') # instance | |
| 611 self.assertEqual(1, len(DoGet(_LOCAL, '/patients'))) | |
| 612 self.assertEqual(1, len(DoGet(_LOCAL, '/studies'))) | |
| 613 self.assertEqual(1, len(DoGet(_LOCAL, '/series'))) | |
| 614 self.assertEqual(1, len(DoGet(_LOCAL, '/instances'))) | |
| 615 | |
| 616 e = DoGet(_REMOTE, '/exports') | |
| 617 self.assertEqual(1, len(e['Exports'])) | |
| 618 self.assertTrue(e['Done']) | |
| 619 self.assertEqual(e['Exports'][-1]['Seq'], e['Last']) | |
| 620 e = DoGet(_REMOTE, '/exports?limit=1') | |
| 621 self.assertEqual(1, len(e['Exports'])) | |
| 622 self.assertTrue(e['Done']) | |
| 623 self.assertEqual(e['Exports'][-1]['Seq'], e['Last']) | |
| 624 e = DoGet(_REMOTE, '/exports?last') | |
| 625 self.assertEqual(1, len(e['Exports'])) | |
| 626 self.assertTrue(e['Done']) | |
| 627 self.assertEqual(e['Exports'][-1]['Seq'], e['Last']) | |
| 628 seqInstance = e['Last'] | |
| 629 | |
| 630 # Export the series | |
| 631 j = DoPost(_REMOTE, '/modalities/orthanctest/store', 'f2635388-f01d497a-15f7c06b-ad7dba06-c4c599fe', 'text/plain') | |
| 632 | |
| 633 e = DoGet(_REMOTE, '/exports') | |
| 634 self.assertEqual(2, len(e['Exports'])) | |
| 635 self.assertTrue(e['Done']) | |
| 636 self.assertEqual(e['Exports'][-1]['Seq'], e['Last']) | |
| 637 seqSeries = e['Last'] | |
| 638 self.assertNotEqual(seqInstance, seqSeries) | |
| 639 e = DoGet(_REMOTE, '/exports?limit=1&since=0') | |
| 640 self.assertEqual(1, len(e['Exports'])) | |
| 641 self.assertFalse(e['Done']) | |
| 642 self.assertEqual(e['Exports'][-1]['Seq'], seqInstance) | |
| 643 e = DoGet(_REMOTE, '/exports?limit=1&since=' + str(seqInstance)) | |
| 644 self.assertEqual(1, len(e['Exports'])) | |
| 645 self.assertTrue(e['Done']) | |
| 646 self.assertEqual(e['Exports'][-1]['Seq'], seqSeries) | |
| 647 e = DoGet(_REMOTE, '/exports?last') | |
| 648 self.assertEqual(1, len(e['Exports'])) | |
| 649 self.assertTrue(e['Done']) | |
| 650 self.assertEqual(e['Exports'][-1]['Seq'], seqSeries) | |
| 651 | |
| 652 # Export the study | |
| 653 j = DoPost(_REMOTE, '/modalities/orthanctest/store', 'b9c08539-26f93bde-c81ab0d7-bffaf2cb-a4d0bdd0', 'text/plain') | |
| 654 seqStudy = DoGet(_REMOTE, '/exports')['Last'] | |
| 655 | |
| 656 # Export the patient | |
| 657 j = DoPost(_REMOTE, '/modalities/orthanctest/store', '6816cb19-844d5aee-85245eba-28e841e6-2414fae2', 'text/plain') | |
| 658 self.assertEqual(1, len(DoGet(_LOCAL, '/patients'))) | |
| 659 self.assertEqual(1, len(DoGet(_LOCAL, '/studies'))) | |
| 660 self.assertEqual(1, len(DoGet(_LOCAL, '/series'))) | |
| 661 self.assertEqual(1, len(DoGet(_LOCAL, '/instances'))) | |
| 662 | |
| 663 e = DoGet(_REMOTE, '/exports') | |
| 664 self.assertEqual(4, len(e['Exports'])) | |
| 665 self.assertTrue(e['Done']) | |
| 666 self.assertEqual(e['Exports'][-1]['Seq'], e['Last']) | |
| 667 seqPatient = e['Last'] | |
| 668 self.assertNotEqual(seqInstance, seqSeries) | |
| 669 self.assertNotEqual(seqSeries, seqStudy) | |
| 670 self.assertNotEqual(seqStudy, seqPatient) | |
| 671 self.assertTrue(seqInstance < seqSeries) | |
| 672 self.assertTrue(seqSeries < seqStudy) | |
| 673 self.assertTrue(seqStudy < seqPatient) | |
| 674 e = DoGet(_REMOTE, '/exports?limit=1&since=0') | |
| 675 self.assertEqual(1, len(e['Exports'])) | |
| 676 self.assertFalse(e['Done']) | |
| 677 self.assertEqual(e['Exports'][-1]['Seq'], seqInstance) | |
| 678 e = DoGet(_REMOTE, '/exports?limit=1&since=' + str(seqInstance)) | |
| 679 self.assertEqual(1, len(e['Exports'])) | |
| 680 self.assertFalse(e['Done']) | |
| 681 self.assertEqual(e['Exports'][-1]['Seq'], seqSeries) | |
| 682 e = DoGet(_REMOTE, '/exports?limit=1&since=' + str(seqSeries)) | |
| 683 self.assertEqual(1, len(e['Exports'])) | |
| 684 self.assertFalse(e['Done']) | |
| 685 self.assertEqual(e['Exports'][-1]['Seq'], seqStudy) | |
| 686 e = DoGet(_REMOTE, '/exports?limit=1&since=' + str(seqStudy)) | |
| 687 self.assertEqual(1, len(e['Exports'])) | |
| 688 self.assertTrue(e['Done']) | |
| 689 self.assertEqual(e['Exports'][-1]['Seq'], seqPatient) | |
| 690 e = DoGet(_REMOTE, '/exports?last') | |
| 691 self.assertEqual(1, len(e['Exports'])) | |
| 692 self.assertTrue(e['Done']) | |
| 693 self.assertEqual(e['Exports'][-1]['Seq'], seqPatient) | |
| 694 | |
| 695 | |
| 696 # Check the content of the logged information | |
| 697 e = DoGet(_REMOTE, '/exports')['Exports'] | |
| 698 | |
| 699 if 'PatientID' in e[0]: | |
| 700 # Since Orthanc 0.8.6 | |
| 701 patient = 'PatientID' | |
| 702 study = 'StudyInstanceUID' | |
| 703 series = 'SeriesInstanceUID' | |
| 704 instance = 'SOPInstanceUID' | |
| 705 else: | |
| 706 # Up to Orthanc 0.8.5 | |
| 707 patient = 'PatientId' | |
| 708 study = 'StudyInstanceUid' | |
| 709 series = 'SeriesInstanceUid' | |
| 710 instance = 'SopInstanceUid' | |
| 711 | |
| 712 for k in range(4): | |
| 713 self.assertTrue('Date' in e[k]) | |
| 714 self.assertTrue('Seq' in e[k]) | |
| 715 self.assertEqual('orthanctest', e[k]['RemoteModality']) | |
| 716 | |
| 717 self.assertEqual(10, len(e[0])) | |
| 718 self.assertEqual('Instance', e[0]['ResourceType']) | |
| 719 self.assertEqual('66a662ce-7430e543-bad44d47-0dc5a943-ec7a538d', e[0]['ID']) | |
| 720 self.assertEqual('/instances/66a662ce-7430e543-bad44d47-0dc5a943-ec7a538d', e[0]['Path']) | |
| 721 self.assertEqual('1.2.840.113619.2.176.2025.1499492.7040.1171286242.109', e[0][instance]) | |
| 722 self.assertEqual('1.2.840.113619.2.176.2025.1499492.7391.1171285944.394', e[0][series]) | |
| 723 self.assertEqual('1.2.840.113619.2.176.2025.1499492.7391.1171285944.390', e[0][study]) | |
| 724 self.assertEqual('ozp00SjY2xG', e[0][patient]) | |
| 725 | |
| 726 self.assertEqual(9, len(e[1])) | |
| 727 self.assertEqual('Series', e[1]['ResourceType']) | |
| 728 self.assertEqual('f2635388-f01d497a-15f7c06b-ad7dba06-c4c599fe', e[1]['ID']) | |
| 729 self.assertEqual('/series/f2635388-f01d497a-15f7c06b-ad7dba06-c4c599fe', e[1]['Path']) | |
| 730 self.assertEqual('1.2.840.113619.2.176.2025.1499492.7391.1171285944.394', e[1][series]) | |
| 731 self.assertEqual('1.2.840.113619.2.176.2025.1499492.7391.1171285944.390', e[1][study]) | |
| 732 self.assertEqual('ozp00SjY2xG', e[1][patient]) | |
| 733 | |
| 734 self.assertEqual(8, len(e[2])) | |
| 735 self.assertEqual('Study', e[2]['ResourceType']) | |
| 736 self.assertEqual('b9c08539-26f93bde-c81ab0d7-bffaf2cb-a4d0bdd0', e[2]['ID']) | |
| 737 self.assertEqual('/studies/b9c08539-26f93bde-c81ab0d7-bffaf2cb-a4d0bdd0', e[2]['Path']) | |
| 738 self.assertEqual('1.2.840.113619.2.176.2025.1499492.7391.1171285944.390', e[2][study]) | |
| 739 self.assertEqual('ozp00SjY2xG', e[2][patient]) | |
| 740 | |
| 741 self.assertEqual(7, len(e[3])) | |
| 742 self.assertEqual('Patient', e[3]['ResourceType']) | |
| 743 self.assertEqual('6816cb19-844d5aee-85245eba-28e841e6-2414fae2', e[3]['ID']) | |
| 744 self.assertEqual('/patients/6816cb19-844d5aee-85245eba-28e841e6-2414fae2', e[3]['Path']) | |
| 745 self.assertEqual('ozp00SjY2xG', e[3][patient]) | |
| 746 | |
| 747 DropOrthanc(_REMOTE) | |
| 748 self.assertEqual(0, len(DoGet(_REMOTE, '/exports')['Exports'])) | |
| 749 | |
| 750 | |
| 751 def test_store_peer(self): | |
| 752 self.assertEqual(0, len(DoGet(_LOCAL, '/exports')['Exports'])) | |
| 753 self.assertEqual(0, len(DoGet(_REMOTE, '/exports')['Exports'])) | |
| 754 | |
| 755 i = UploadInstance(_REMOTE, 'DummyCT.dcm')['ID'] | |
| 756 self.assertEqual(0, len(DoGet(_LOCAL, '/patients'))) | |
| 757 self.assertEqual(1, len(DoGet(_REMOTE, '/patients'))) | |
| 758 | |
| 759 j = DoPost(_REMOTE, '/peers/peer/store', str(i), 'text/plain') | |
| 760 self.assertEqual(1, len(DoGet(_LOCAL, '/patients'))) | |
| 761 self.assertEqual(1, len(DoGet(_REMOTE, '/patients'))) | |
| 762 | |
| 763 self.assertEqual(1, len(DoGet(_REMOTE, '/exports')['Exports'])) | |
| 764 | |
| 765 DropOrthanc(_REMOTE) | |
| 766 self.assertEqual(0, len(DoGet(_REMOTE, '/exports')['Exports'])) | |
| 767 | |
| 768 | |
| 769 def test_bulk_storescu(self): | |
| 770 self.assertEqual(0, len(DoGet(_LOCAL, '/patients'))) | |
| 771 | |
| 772 a = UploadInstance(_REMOTE, 'Knee/T1/IM-0001-0001.dcm') | |
| 773 b = UploadInstance(_REMOTE, 'Knee/T2/IM-0001-0001.dcm') | |
| 774 | |
| 775 j = DoPost(_REMOTE, '/modalities/orthanctest/store', [ a['ID'], b['ID'] ], 'application/json') | |
| 776 self.assertEqual(2, len(DoGet(_LOCAL, '/instances'))) | |
| 777 | |
| 778 DropOrthanc(_LOCAL) | |
| 779 | |
| 780 # Send using patient's UUID | |
| 781 self.assertEqual(0, len(DoGet(_LOCAL, '/instances'))) | |
| 782 j = DoPost(_REMOTE, '/modalities/orthanctest/store', | |
| 783 [ 'ca29faea-b6a0e17f-067743a1-8b778011-a48b2a17' ], 'application/json') | |
| 784 self.assertEqual(2, len(DoGet(_LOCAL, '/instances'))) | |
| 785 | |
| 786 | |
| 787 def test_color(self): | |
| 788 i = UploadInstance(_REMOTE, 'ColorTestMalaterre.dcm')['ID'] | |
| 789 im = GetImage(_REMOTE, '/instances/%s/preview' % i) | |
| 790 self.assertEqual("RGB", im.mode) | |
| 791 self.assertEqual(41, im.size[0]) | |
| 792 self.assertEqual(41, im.size[1]) | |
| 793 | |
| 794 # http://effbot.org/zone/pil-comparing-images.htm | |
| 13 | 795 truth = Image.open(GetDatabasePath('ColorTestMalaterre.png')) |
| 11 | 796 self.assertTrue(ImageChops.difference(im, truth).getbbox() is None) |
| 797 | |
| 798 | |
| 12 | 799 def test_faking_ruby_put(self): |
| 800 UploadInstance(_REMOTE, 'Knee/T1/IM-0001-0001.dcm') | |
| 801 UploadInstance(_REMOTE, 'Brainix/Flair/IM-0001-0001.dcm') | |
| 802 self.assertEqual(2, len(DoGet(_REMOTE, '/patients'))) | |
| 803 a = DoGet(_REMOTE, '/patients')[0] | |
| 804 b = DoGet(_REMOTE, '/patients')[1] | |
| 805 self.assertEqual(0, DoGet(_REMOTE, '/patients/%s/protected' % a)) | |
| 806 DoGet(_REMOTE, '/patients/%s/protected' % a, data = { '_method' : 'PUT' }, body = '0') | |
| 807 self.assertEqual(0, DoGet(_REMOTE, '/patients/%s/protected' % a)) | |
| 808 DoGet(_REMOTE, '/patients/%s/protected' % a, data = { '_method' : 'PUT' }, body = '1') | |
| 809 self.assertEqual(1, DoGet(_REMOTE, '/patients/%s/protected' % a)) | |
| 810 DoGet(_REMOTE, '/patients/%s/protected' % a, data = { '_method' : 'PUT' }, body = '0') | |
| 811 self.assertEqual(0, DoGet(_REMOTE, '/patients/%s/protected' % a)) | |
| 812 | |
| 813 | |
| 814 def test_faking_ruby_delete(self): | |
| 815 UploadInstance(_REMOTE, 'Knee/T1/IM-0001-0001.dcm') | |
| 816 UploadInstance(_REMOTE, 'Brainix/Flair/IM-0001-0001.dcm') | |
| 817 self.assertEqual(2, len(DoGet(_REMOTE, '/patients'))) | |
| 818 a = DoGet(_REMOTE, '/patients')[0] | |
| 819 b = DoGet(_REMOTE, '/patients')[1] | |
| 820 DoGet(_REMOTE, '/patients/%s' % a, data = { '_method' : 'DELETE' }) | |
| 821 self.assertEqual(1, len(DoGet(_REMOTE, '/patients'))) | |
| 822 DoGet(_REMOTE, '/patients/%s' % b, data = { '_method' : 'DELETE' }) | |
| 823 self.assertEqual(0, len(DoGet(_REMOTE, '/patients'))) | |
| 824 | |
| 825 | |
| 826 def test_faking_google_put(self): | |
| 827 UploadInstance(_REMOTE, 'Knee/T1/IM-0001-0001.dcm') | |
| 828 UploadInstance(_REMOTE, 'Brainix/Flair/IM-0001-0001.dcm') | |
| 829 self.assertEqual(2, len(DoGet(_REMOTE, '/patients'))) | |
| 830 a = DoGet(_REMOTE, '/patients')[0] | |
| 831 b = DoGet(_REMOTE, '/patients')[1] | |
| 832 self.assertEqual(0, DoGet(_REMOTE, '/patients/%s/protected' % a)) | |
| 833 DoPost(_REMOTE, '/patients/%s/protected' % a, headers = { 'X-HTTP-Method-Override' : 'PUT' }, data = '0') | |
| 834 self.assertEqual(0, DoGet(_REMOTE, '/patients/%s/protected' % a)) | |
| 835 DoPost(_REMOTE, '/patients/%s/protected' % a, headers = { 'X-HTTP-Method-Override' : 'PUT' }, data = '1') | |
| 836 self.assertEqual(1, DoGet(_REMOTE, '/patients/%s/protected' % a)) | |
| 837 DoPost(_REMOTE, '/patients/%s/protected' % a, headers = { 'X-HTTP-Method-Override' : 'PUT' }, data = '0') | |
| 838 self.assertEqual(0, DoGet(_REMOTE, '/patients/%s/protected' % a)) | |
| 839 | |
| 840 | |
| 841 def test_faking_google_delete(self): | |
| 842 UploadInstance(_REMOTE, 'Knee/T1/IM-0001-0001.dcm') | |
| 843 UploadInstance(_REMOTE, 'Brainix/Flair/IM-0001-0001.dcm') | |
| 844 self.assertEqual(2, len(DoGet(_REMOTE, '/patients'))) | |
| 845 a = DoGet(_REMOTE, '/patients')[0] | |
| 846 b = DoGet(_REMOTE, '/patients')[1] | |
| 847 DoPost(_REMOTE, '/patients/%s' % a, headers = { 'X-HTTP-Method-Override' : 'DELETE' }) | |
| 848 self.assertEqual(1, len(DoGet(_REMOTE, '/patients'))) | |
| 849 DoPost(_REMOTE, '/patients/%s' % b, headers = { 'X-HTTP-Method-Override' : 'DELETE' }) | |
| 850 self.assertEqual(0, len(DoGet(_REMOTE, '/patients'))) | |
| 851 | |
| 852 | |
| 853 def test_lua(self): | |
| 854 self.assertEqual(42, DoPost(_REMOTE, '/tools/execute-script', 'print(42)')) | |
| 855 self.assertTrue(IsDefinedInLua(_REMOTE, 'PrintRecursive')) | |
| 856 self.assertFalse(IsDefinedInLua(_REMOTE, 'HelloWorld')) | |
| 857 | |
| 858 | |
| 859 def test_metadata(self): | |
| 860 UploadInstance(_REMOTE, 'Knee/T1/IM-0001-0001.dcm') | |
| 861 p = DoGet(_REMOTE, '/patients')[0] | |
| 862 i = DoGet(_REMOTE, '/instances')[0] | |
| 863 | |
| 864 m = DoGet(_REMOTE, '/patients/%s/metadata' % p) | |
| 865 self.assertEqual(1, len(m)) | |
| 866 self.assertEqual('LastUpdate', m[0]) | |
| 867 | |
| 868 m = DoGet(_REMOTE, '/instances/%s/metadata' % i) | |
| 869 self.assertEqual(3, len(m)) | |
| 870 self.assertTrue('IndexInSeries' in m) | |
| 871 self.assertTrue('ReceptionDate' in m) | |
| 872 self.assertTrue('RemoteAET' in m) | |
| 873 | |
| 874 # Play with custom metadata | |
| 875 DoPut(_REMOTE, '/patients/%s/metadata/5555' % p, 'coucou') | |
| 876 m = DoGet(_REMOTE, '/patients/%s/metadata' % p) | |
| 877 self.assertEqual(2, len(m)) | |
| 878 self.assertTrue('LastUpdate' in m) | |
| 879 self.assertTrue('5555' in m) | |
| 880 self.assertEqual('coucou', DoGet(_REMOTE, '/patients/%s/metadata/5555' % p)) | |
| 881 DoPut(_REMOTE, '/patients/%s/metadata/5555' % p, 'hello') | |
| 882 self.assertEqual('hello', DoGet(_REMOTE, '/patients/%s/metadata/5555' % p)) | |
| 883 DoDelete(_REMOTE, '/patients/%s/metadata/5555' % p) | |
| 884 m = DoGet(_REMOTE, '/patients/%s/metadata' % p) | |
| 885 self.assertEqual(1, len(m)) | |
| 886 self.assertTrue('LastUpdate' in m) | |
| 13 | 887 |
| 888 | |
| 889 def test_statistics(self): | |
| 890 # Upload 16 instances | |
| 891 for i in range(4): | |
| 892 UploadInstance(_REMOTE, 'Brainix/Flair/IM-0001-000%d.dcm' % (i + 1)) | |
| 893 UploadInstance(_REMOTE, 'Brainix/Epi/IM-0001-000%d.dcm' % (i + 1)) | |
| 894 UploadInstance(_REMOTE, 'Knee/T1/IM-0001-000%d.dcm' % (i + 1)) | |
| 895 UploadInstance(_REMOTE, 'Knee/T2/IM-0001-000%d.dcm' % (i + 1)) | |
| 896 | |
| 897 s = DoGet(_REMOTE, '/statistics') | |
| 898 self.assertEqual(16, s['CountInstances']) | |
| 899 self.assertEqual(2, s['CountPatients']) | |
| 900 self.assertEqual(2, s['CountStudies']) | |
| 901 self.assertEqual(4, s['CountSeries']) | |
| 902 d = int(s['TotalUncompressedSize']) | |
| 903 | |
| 904 e = 0 | |
| 905 for patient in DoGet(_REMOTE, '/patients'): | |
| 906 s = DoGet(_REMOTE, '/patients/%s/statistics' % patient) | |
| 907 self.assertEqual(8, s['CountInstances']) | |
| 908 self.assertEqual(1, s['CountStudies']) | |
| 909 self.assertEqual(2, s['CountSeries']) | |
| 910 e += int(s['UncompressedSize']) | |
| 911 | |
| 912 for study in DoGet(_REMOTE, '/studies'): | |
| 913 s = DoGet(_REMOTE, '/studies/%s/statistics' % study) | |
| 914 self.assertEqual(8, s['CountInstances']) | |
| 915 self.assertEqual(2, s['CountSeries']) | |
| 916 e += int(s['UncompressedSize']) | |
| 917 | |
| 918 for series in DoGet(_REMOTE, '/series'): | |
| 919 s = DoGet(_REMOTE, '/series/%s/statistics' % series) | |
| 920 self.assertEqual(4, s['CountInstances']) | |
| 921 e += int(s['UncompressedSize']) | |
| 922 | |
| 923 self.assertEqual(3 * d, e) | |
| 924 | |
| 925 | |
| 926 def test_custom_attachment(self): | |
| 927 UploadInstance(_REMOTE, 'Brainix/Flair/IM-0001-0001.dcm') | |
| 928 patient = DoGet(_REMOTE, '/patients')[0] | |
| 929 instance = DoGet(_REMOTE, '/instances')[0] | |
| 930 size = int(DoGet(_REMOTE, '/patients/%s/statistics' % patient)['DiskSize']) | |
| 931 self.assertEqual(size, int(DoGet(_REMOTE, '/statistics')['TotalDiskSize'])) | |
| 932 | |
| 933 self.assertEqual(0, len(DoGet(_REMOTE, '/patients/%s/attachments' % patient))) | |
| 934 self.assertEqual(2, len(DoGet(_REMOTE, '/instances/%s/attachments' % instance))) | |
| 935 self.assertTrue('dicom' in DoGet(_REMOTE, '/instances/%s/attachments' % instance)) | |
| 936 self.assertTrue('dicom-as-json' in DoGet(_REMOTE, '/instances/%s/attachments' % instance)) | |
| 937 | |
| 938 self.assertRaises(Exception, lambda: DoPut(_REMOTE, '/patients/%s/attachments/22' % patient, 'hello')) | |
| 939 hello = 'hellohellohellohellohellohellohellohellohello' | |
| 940 DoPut(_REMOTE, '/patients/%s/attachments/1025' % patient, hello) | |
| 941 self.assertEqual(int(DoGet(_REMOTE, '/patients/%s/statistics' % patient)['DiskSize']), | |
| 942 int(DoGet(_REMOTE, '/statistics')['TotalDiskSize'])) | |
| 943 self.assertEqual(int(DoGet(_REMOTE, '/patients/%s/statistics' % patient)['DiskSize']), | |
| 944 size + int(DoGet(_REMOTE, '/patients/%s/attachments/1025/compressed-size' % patient))) | |
| 945 | |
| 946 DoPut(_REMOTE, '/patients/%s/attachments/1026' % patient, 'world') | |
| 947 self.assertEqual(int(DoGet(_REMOTE, '/patients/%s/statistics' % patient)['DiskSize']), | |
| 948 int(DoGet(_REMOTE, '/statistics')['TotalDiskSize'])) | |
| 949 self.assertEqual(int(DoGet(_REMOTE, '/patients/%s/statistics' % patient)['DiskSize']), | |
| 950 size + | |
| 951 int(DoGet(_REMOTE, '/patients/%s/attachments/1025/compressed-size' % patient)) + | |
| 952 int(DoGet(_REMOTE, '/patients/%s/attachments/1026/compressed-size' % patient))) | |
| 953 | |
| 954 self.assertEqual(2, len(DoGet(_REMOTE, '/patients/%s/attachments' % patient))) | |
| 955 self.assertEqual(hello, DoGet(_REMOTE, '/patients/%s/attachments/1025/data' % patient)) | |
| 956 self.assertEqual('world', DoGet(_REMOTE, '/patients/%s/attachments/1026/data' % patient)) | |
| 957 DoPost(_REMOTE, '/patients/%s/attachments/1025/verify-md5' % patient) | |
| 958 DoPost(_REMOTE, '/patients/%s/attachments/1026/verify-md5' % patient) | |
| 959 DoPut(_REMOTE, '/patients/%s/attachments/1026' % patient, 'world2') | |
| 960 self.assertEqual('world2', DoGet(_REMOTE, '/patients/%s/attachments/1026/data' % patient)) | |
| 961 | |
| 962 self.assertRaises(Exception, lambda: DoDelete(_REMOTE, '/instances/%s/attachments/dicom' % instance)) | |
| 963 DoDelete(_REMOTE, '/patients/%s/attachments/1025' % patient) | |
| 964 self.assertEqual(int(DoGet(_REMOTE, '/patients/%s/statistics' % patient)['DiskSize']), | |
| 965 int(DoGet(_REMOTE, '/statistics')['TotalDiskSize'])) | |
| 966 self.assertEqual(int(DoGet(_REMOTE, '/patients/%s/statistics' % patient)['DiskSize']), | |
| 967 size + int(DoGet(_REMOTE, '/patients/%s/attachments/1026/compressed-size' % patient))) | |
| 968 | |
| 969 self.assertEqual(1, len(DoGet(_REMOTE, '/patients/%s/attachments' % patient))) | |
| 970 DoDelete(_REMOTE, '/patients/%s/attachments/1026' % patient) | |
| 971 self.assertEqual(0, len(DoGet(_REMOTE, '/patients/%s/attachments' % patient))) | |
| 972 | |
| 973 self.assertEqual(int(DoGet(_REMOTE, '/patients/%s/statistics' % patient)['DiskSize']), size) | |
| 974 self.assertEqual(size, int(DoGet(_REMOTE, '/statistics')['TotalDiskSize'])) | |
| 975 | |
| 976 | |
| 977 def test_incoming_storescu(self): | |
| 978 self.assertEqual(0, len(DoGet(_REMOTE, '/patients'))) | |
| 979 subprocess.check_call([ 'storescu', _REMOTE['Server'], str(_REMOTE['DicomPort']), | |
| 980 GetDatabasePath('ColorTestImageJ.dcm') ]) | |
| 981 self.assertEqual(1, len(DoGet(_REMOTE, '/patients'))) | |
| 982 | |
| 983 | |
| 984 def test_incoming_findscu(self): | |
| 985 def CallFindScu(args): | |
| 986 p = subprocess.Popen([ 'findscu', '-P', '-aec', _REMOTE['DicomAet'], '-aet', _LOCAL['DicomAet'], | |
| 987 _REMOTE['Server'], str(_REMOTE['DicomPort']) ] + args, | |
| 988 stderr=subprocess.PIPE) | |
| 989 return p.communicate()[1] | |
| 990 | |
| 991 UploadInstance(_REMOTE, 'Multiframe.dcm') | |
| 992 UploadInstance(_REMOTE, 'ColorTestImageJ.dcm') | |
| 993 | |
| 994 i = CallFindScu([ '-k', '0008,0052=PATIENT', '-k', '0010,0010' ]) | |
| 995 patientNames = re.findall('\(0010,0010\).*?\[(.*?)\]', i) | |
| 996 self.assertEqual(2, len(patientNames)) | |
| 997 self.assertTrue('Test Patient BG ' in patientNames) | |
| 998 self.assertTrue('Anonymized' in patientNames) | |
| 999 | |
| 1000 i = CallFindScu([ '-k', '0008,0052=SERIES', '-k', '0008,0021' ]) | |
| 1001 series = re.findall('\(0008,0021\).*?\[\s*(.*?)\s*\]', i) | |
| 1002 self.assertEqual(2, len(series)) | |
| 1003 self.assertTrue('20070208' in series) | |
| 1004 self.assertTrue('19980312' in series) | |
| 1005 | |
| 1006 i = CallFindScu([ '-k', '0008,0052=SERIES', '-k', 'PatientName=Anonymized' ]) | |
| 1007 series = re.findall('\(0010,0010\).*?\[\s*(.*?)\s*\]', i) | |
| 1008 self.assertEqual(1, len(series)) | |
| 1009 | |
| 1010 # Test the "CaseSentitivePN" flag (false by default) | |
| 1011 i = CallFindScu([ '-k', '0008,0052=SERIES', '-k', 'PatientName=anonymized' ]) | |
| 1012 series = re.findall('\(0010,0010\).*?\[\s*(.*?)\s*\]', i) | |
| 1013 self.assertEqual(1, len(series)) | |
| 1014 | |
| 1015 | |
| 1016 def test_incoming_movescu(self): | |
| 1017 def CallMoveScu(args): | |
| 1018 subprocess.check_call([ 'movescu', | |
| 17 | 1019 '--move', _LOCAL['DicomAet'], # Target AET (i.e. storescp) |
| 1020 '--call', _REMOTE['DicomAet'], # Called AET (i.e. Orthanc) | |
| 1021 '--aetitle', _LOCAL['DicomAet'], # Calling AET (i.e. storescp) | |
| 13 | 1022 _REMOTE['Server'], str(_REMOTE['DicomPort']) ] + args, |
| 1023 stderr=subprocess.PIPE) | |
| 1024 | |
| 1025 UploadInstance(_REMOTE, 'Multiframe.dcm') | |
| 1026 | |
| 1027 self.assertEqual(0, len(DoGet(_LOCAL, '/patients'))) | |
| 17 | 1028 CallMoveScu([ '--patient', '-k', '0008,0052=PATIENT', '-k', 'PatientID=none' ]) |
| 13 | 1029 self.assertEqual(0, len(DoGet(_LOCAL, '/patients'))) |
| 1030 CallMoveScu([ '--patient', '-k', '0008,0052=PATIENT', '-k', 'PatientID=12345678' ]) | |
| 1031 self.assertEqual(1, len(DoGet(_LOCAL, '/patients'))) | |
| 1032 | |
| 1033 | |
| 1034 def test_findscu(self): | |
| 1035 i = UploadInstance(_REMOTE, 'DummyCT.dcm')['ID'] | |
| 1036 j = UploadInstance(_REMOTE, 'Issue22.dcm')['ID'] | |
| 1037 k = UploadInstance(_REMOTE, 'ColorTestImageJ.dcm')['ID'] | |
| 1038 DoPost(_REMOTE, '/modalities/orthanctest/store', str(i), 'text/plain') | |
| 1039 | |
| 1040 # Test the "find-patient" level | |
| 1041 p = DoPost(_REMOTE, '/modalities/orthanctest/find-patient', { }) | |
| 1042 self.assertEqual(1, len(p)) | |
| 1043 self.assertEqual('ozp00SjY2xG', p[0]['PatientID']) | |
| 1044 | |
| 1045 # Test wildcards constraints. The "LO" value representation | |
| 1046 # for PatientID is always case-sensitive, but the "PN" for | |
| 1047 # PatientName might depend on the implementation: | |
| 1048 # "GenerateConfigurationForTests.py" will force it to be case | |
| 1049 # insensitive (which was the default until Orthanc 0.8.6). | |
| 1050 p = DoPost(_REMOTE, '/modalities/orthanctest/find-patient', { 'PatientName' : 'K*' }) | |
| 1051 self.assertEqual(1, len(p)) | |
| 1052 | |
| 1053 p = DoPost(_REMOTE, '/modalities/orthanctest/find-patient', { 'PatientName' : 'k*' }) | |
| 1054 self.assertEqual(1, len(p)) | |
| 1055 | |
| 1056 p = DoPost(_REMOTE, '/modalities/orthanctest/find-patient', { 'PatientID' : 'ozp*' }) | |
| 1057 self.assertEqual(1, len(p)) | |
| 1058 | |
| 1059 p = DoPost(_REMOTE, '/modalities/orthanctest/find-patient', { 'PatientID' : 'o?p*' }) | |
| 1060 self.assertEqual(1, len(p)) | |
| 1061 | |
| 1062 p = DoPost(_REMOTE, '/modalities/orthanctest/find-patient', { 'PatientID' : '0?q*' }) | |
| 1063 self.assertEqual(0, len(p)) | |
| 1064 | |
| 1065 p = DoPost(_REMOTE, '/modalities/orthanctest/find-patient', { 'PatientName' : 'B*' }) | |
| 1066 self.assertEqual(0, len(p)) | |
| 1067 | |
| 1068 p = DoPost(_REMOTE, '/modalities/orthanctest/find-patient', { 'PatientName' : 'b*' }) | |
| 1069 self.assertEqual(0, len(p)) | |
| 1070 | |
| 1071 DoPost(_REMOTE, '/modalities/orthanctest/store', str(j), 'text/plain') | |
| 1072 DoPost(_REMOTE, '/modalities/orthanctest/store', str(k), 'text/plain') | |
| 1073 DoPost(_REMOTE, '/modalities/orthanctest/find-patient', { }) | |
| 1074 self.assertEqual(3, len(DoPost(_REMOTE, '/modalities/orthanctest/find-patient', { }))) | |
| 1075 | |
| 1076 p = DoPost(_REMOTE, '/modalities/orthanctest/find-patient', { 'PatientName' : 'A*' }) | |
| 1077 self.assertEqual(2, len(p)) | |
| 1078 | |
| 1079 # Test the "find-study" level. This is the instance "ColorTestImageJ.dcm" | |
| 1080 s = DoPost(_REMOTE, '/modalities/orthanctest/find-study', { 'PatientID' : 'B9uTHKOZ' }) | |
| 1081 self.assertEqual(1, len(s)) | |
| 1082 self.assertEqual('20070208', s[0]['StudyDate']) | |
| 1083 | |
| 1084 # Test range searches | |
| 1085 t = DoPost(_REMOTE, '/modalities/orthanctest/find-study', { 'PatientID' : 'B9uTHKOZ', | |
| 1086 'StudyDate' : '-20070101' }) | |
| 1087 self.assertEqual(0, len(t)) | |
| 1088 | |
| 1089 t = DoPost(_REMOTE, '/modalities/orthanctest/find-study', { 'PatientID' : 'B9uTHKOZ', | |
| 1090 'StudyDate' : '20090101-' }) | |
| 1091 self.assertEqual(0, len(t)) | |
| 1092 | |
| 1093 t = DoPost(_REMOTE, '/modalities/orthanctest/find-study', { 'PatientID' : 'B9uTHKOZ', | |
| 1094 'StudyDate' : '20070101-' }) | |
| 1095 self.assertEqual(1, len(t)) | |
| 1096 | |
| 1097 t = DoPost(_REMOTE, '/modalities/orthanctest/find-study', { 'PatientID' : 'B9uTHKOZ', | |
| 1098 'StudyDate' : '-20090101' }) | |
| 1099 self.assertEqual(1, len(t)) | |
| 1100 | |
| 1101 t = DoPost(_REMOTE, '/modalities/orthanctest/find-study', { 'PatientID' : 'B9uTHKOZ', | |
| 1102 'StudyDate' : '20070207-20070207' }) | |
| 1103 self.assertEqual(0, len(t)) | |
| 1104 | |
| 1105 t = DoPost(_REMOTE, '/modalities/orthanctest/find-study', { 'PatientID' : 'B9uTHKOZ', | |
| 1106 'StudyDate' : '20070208-20070208' }) | |
| 1107 self.assertEqual(1, len(t)) | |
| 1108 | |
| 1109 t = DoPost(_REMOTE, '/modalities/orthanctest/find-study', { 'PatientID' : 'B9uTHKOZ', | |
| 1110 'StudyDate' : '20070209-20070209' }) | |
| 1111 self.assertEqual(0, len(t)) | |
| 1112 | |
| 1113 # Test the ModalitiesInStudy tag | |
| 1114 t = DoPost(_REMOTE, '/modalities/orthanctest/find-study', { | |
| 1115 'PatientID' : 'B9uTHKOZ', | |
| 1116 'ModalitiesInStudy' : 'US' }) | |
| 1117 self.assertEqual(0, len(t)) | |
| 1118 | |
| 1119 t = DoPost(_REMOTE, '/modalities/orthanctest/find-study', { | |
| 1120 'PatientID' : 'B9uTHKOZ', | |
| 1121 'ModalitiesInStudy' : 'CT' }) | |
| 1122 self.assertEqual(1, len(t)) | |
| 1123 | |
| 1124 t = DoPost(_REMOTE, '/modalities/orthanctest/find-study', { | |
| 1125 'PatientID' : 'B9uTHKOZ', | |
| 1126 'ModalitiesInStudy' : 'US\\CT' }) | |
| 1127 self.assertEqual(1, len(t)) | |
| 1128 | |
| 1129 # Test the "find-series" level | |
| 1130 t = DoPost(_REMOTE, '/modalities/orthanctest/find-series', { | |
| 1131 'PatientID' : 'B9uTHKOZ', | |
| 1132 'StudyInstanceUID' : s[0]['StudyInstanceUID'] }) | |
| 1133 self.assertEqual(1, len(t)) | |
| 1134 | |
| 1135 # Test "\" separator | |
| 1136 t = DoPost(_REMOTE, '/modalities/orthanctest/find-series', { | |
| 1137 'PatientID' : 'B9uTHKOZ', | |
| 1138 'StudyInstanceUID' : s[0]['StudyInstanceUID'], | |
| 1139 'Modality' : 'MR\\CT\\US' }) | |
| 1140 self.assertEqual(1, len(t)) | |
| 1141 | |
| 1142 t = DoPost(_REMOTE, '/modalities/orthanctest/find-series', { | |
| 1143 'PatientID' : 'B9uTHKOZ', | |
| 1144 'StudyInstanceUID' : s[0]['StudyInstanceUID'], | |
| 1145 'Modality' : 'MR\\US' }) | |
| 1146 self.assertEqual(0, len(t)) | |
| 1147 | |
| 1148 | |
| 1149 def test_update_modalities(self): | |
| 1150 try: | |
| 1151 DoDelete(_REMOTE, '/modalities/toto') | |
| 1152 except: | |
| 1153 pass | |
| 1154 try: | |
| 1155 DoDelete(_REMOTE, '/modalities/tata') | |
| 1156 except: | |
| 1157 pass | |
| 1158 self.assertRaises(Exception, lambda: DoGet(_REMOTE, '/modalities/toto')) | |
| 1159 DoPut(_REMOTE, '/modalities/toto', [ "STORESCP", "localhost", 2000 ]) | |
| 1160 DoPut(_REMOTE, '/modalities/tata', [ "STORESCP", "localhost", 2000, 'MedInria' ]) | |
| 1161 self.assertRaises(Exception, lambda: DoPut(_REMOTE, '/modalities/toto', [ "STORESCP", "localhost", 2000, 'MedInriaaa' ])) | |
| 1162 self.assertTrue('store' in DoGet(_REMOTE, '/modalities/toto')) | |
| 1163 self.assertTrue('store' in DoGet(_REMOTE, '/modalities/tata')) | |
| 1164 DoDelete(_REMOTE, '/modalities/toto') | |
| 1165 DoDelete(_REMOTE, '/modalities/tata') | |
| 1166 self.assertRaises(Exception, lambda: DoGet(_REMOTE, '/modalities/toto')) | |
| 1167 self.assertRaises(Exception, lambda: DoGet(_REMOTE, '/modalities/tata')) | |
| 1168 | |
| 1169 | |
| 1170 def test_update_peers(self): | |
| 1171 # curl -X PUT http://localhost:8042/peers/toto -d '["http://localhost:8042/"]' -v | |
| 1172 try: | |
| 1173 DoDelete(_REMOTE, '/peers/toto') | |
| 1174 except: | |
| 1175 pass | |
| 1176 try: | |
| 1177 DoDelete(_REMOTE, '/peers/tata') | |
| 1178 except: | |
| 1179 pass | |
| 1180 self.assertRaises(Exception, lambda: DoGet(_REMOTE, '/peers/toto')) | |
| 1181 DoPut(_REMOTE, '/peers/toto', [ 'http://localhost:8042/' ]) | |
| 1182 DoPut(_REMOTE, '/peers/tata', [ 'http://localhost:8042/', 'user', 'pass' ]) | |
| 1183 self.assertRaises(Exception, lambda: DoPut(_REMOTE, '/peers/toto', [ 'http://localhost:8042/', 'a' ])) | |
| 1184 self.assertRaises(Exception, lambda: DoPut(_REMOTE, '/peers/toto', [ 'http://localhost:8042/', 'a', 'b', 'c' ])) | |
| 1185 self.assertTrue('store' in DoGet(_REMOTE, '/peers/toto')) | |
| 1186 self.assertTrue('store' in DoGet(_REMOTE, '/peers/tata')) | |
| 1187 DoDelete(_REMOTE, '/peers/toto') | |
| 1188 DoDelete(_REMOTE, '/peers/tata') | |
| 1189 self.assertRaises(Exception, lambda: DoGet(_REMOTE, '/peers/toto')) | |
| 1190 self.assertRaises(Exception, lambda: DoGet(_REMOTE, '/peers/tata')) | |
| 1191 | |
| 1192 | |
| 1193 def test_mesterhazy_modification(self): | |
| 1194 # When I modify a series ( eg. curl | |
| 1195 # http://localhost:8042/series/uidhere/modify -X POST -d | |
| 1196 # '{"Replace":{"SeriesDate":"19990101"}}' ) the modified | |
| 1197 # series is added to a new Study, instead of the existing | |
| 1198 # Study. Fixed in Orthanc 0.7.5 | |
| 1199 | |
| 1200 u = UploadInstance(_REMOTE, 'DummyCT.dcm') | |
| 1201 study = 'b9c08539-26f93bde-c81ab0d7-bffaf2cb-a4d0bdd0' | |
| 1202 series = 'f2635388-f01d497a-15f7c06b-ad7dba06-c4c599fe' | |
| 1203 | |
| 1204 modified = DoPost(_REMOTE, '/series/%s/modify' % series, | |
| 1205 json.dumps({ "Replace" : { "SeriesDate" : "19990101" }})) | |
| 1206 | |
| 1207 self.assertEqual(study, DoGet(_REMOTE, '/series/%s' % modified['ID']) ['ParentStudy']) | |
| 1208 | |
| 1209 | |
| 1210 def test_create(self): | |
| 1211 i = DoPost(_REMOTE, '/tools/create-dicom', | |
| 1212 json.dumps({ | |
| 1213 'PatientName' : 'Jodogne', | |
| 1214 'Modality' : 'CT', | |
| 1215 'PixelData' : 'data:image/png;base64,iVBORw0KGgoAAAANSUhEUgAAAAUAAAAFCAYAAACNbyblAAAAHElEQVQI12P4//8/w38GIAXDIBKE0DHxgljNBAAO9TXL0Y4OHwAAAABJRU5ErkJggg==' # red dot in RGBA | |
| 1216 })) | |
| 1217 | |
| 1218 self.assertEqual('Jodogne', DoGet(_REMOTE, '/instances/%s/content/PatientName' % i['ID']).strip()) | |
| 1219 self.assertEqual('CT', DoGet(_REMOTE, '/instances/%s/content/Modality' % i['ID']).strip()) | |
| 1220 | |
| 1221 png = GetImage(_REMOTE, '/instances/%s/preview' % i['ID']) | |
| 1222 self.assertEqual((5, 5), png.size) | |
| 1223 | |
| 1224 | |
| 1225 def test_pilates(self): | |
| 1226 # "SCU failed error when accessing orthanc with osirix" by | |
| 1227 # Pilates Agentur (Mar 10, 2014 at 9:33 PM) | |
| 1228 i = UploadInstance(_REMOTE, 'PilatesArgenturGEUltrasoundOsiriX.dcm')['ID'] | |
| 1229 self.assertEqual(0, len(DoGet(_LOCAL, '/patients'))) | |
| 1230 j = DoPost(_REMOTE, '/modalities/orthanctest/store', str(i), 'text/plain') | |
| 1231 self.assertEqual(1, len(DoGet(_LOCAL, '/patients'))) | |
| 1232 | |
| 1233 | |
| 1234 def test_shared_tags(self): | |
| 1235 a = UploadInstance(_REMOTE, 'Knee/T1/IM-0001-0001.dcm')['ID'] | |
| 1236 b = UploadInstance(_REMOTE, 'Knee/T1/IM-0001-0002.dcm')['ID'] | |
| 1237 p = DoGet(_REMOTE, '/patients')[0] | |
| 1238 | |
| 1239 self.assertTrue('0010,0010' in DoGet(_REMOTE, '/patients/%s/shared-tags' % p)) | |
| 1240 self.assertTrue('PatientName' in DoGet(_REMOTE, '/patients/%s/shared-tags?simplify' % p)) | |
| 1241 self.assertTrue('0008,1030' in DoGet(_REMOTE, '/patients/%s/shared-tags' % p)) | |
| 1242 self.assertTrue('StudyDescription' in DoGet(_REMOTE, '/patients/%s/shared-tags?simplify' % p)) | |
| 1243 self.assertTrue('0008,103e' in DoGet(_REMOTE, '/patients/%s/shared-tags' % p)) | |
| 1244 self.assertTrue('SeriesDescription' in DoGet(_REMOTE, '/patients/%s/shared-tags?simplify' % p)) | |
| 1245 self.assertFalse('0008,0018' in DoGet(_REMOTE, '/patients/%s/shared-tags' % p)) | |
| 1246 self.assertFalse('SOPInstanceUID' in DoGet(_REMOTE, '/patients/%s/shared-tags?simplify' % p)) | |
| 1247 | |
| 1248 self.assertTrue('0008,0018' in DoGet(_REMOTE, '/instances/%s/tags' % a)) | |
| 1249 self.assertTrue('SOPInstanceUID' in DoGet(_REMOTE, '/instances/%s/tags?simplify' % a)) | |
| 1250 | |
| 1251 | |
| 1252 def test_modules(self): | |
| 1253 a = UploadInstance(_REMOTE, 'Knee/T1/IM-0001-0001.dcm')['ID'] | |
| 1254 p = DoGet(_REMOTE, '/patients')[0] | |
| 1255 s = DoGet(_REMOTE, '/studies')[0] | |
| 1256 t = DoGet(_REMOTE, '/series')[0] | |
| 1257 | |
| 1258 self.assertTrue('0010,0010' in DoGet(_REMOTE, '/patients/%s/module' % p)) | |
| 1259 self.assertTrue('PatientName' in DoGet(_REMOTE, '/patients/%s/module?simplify' % p)) | |
| 1260 self.assertTrue('0010,0010' in DoGet(_REMOTE, '/studies/%s/module-patient' % p)) | |
| 1261 self.assertTrue('PatientName' in DoGet(_REMOTE, '/studies/%s/module-patient?simplify' % p)) | |
| 1262 self.assertTrue('0008,1030' in DoGet(_REMOTE, '/studies/%s/module' % s)) | |
| 1263 self.assertTrue('StudyDescription' in DoGet(_REMOTE, '/studies/%s/module?simplify' % s)) | |
| 1264 self.assertTrue('0008,103e' in DoGet(_REMOTE, '/series/%s/module' % p)) | |
| 1265 self.assertTrue('SeriesDescription' in DoGet(_REMOTE, '/series/%s/module?simplify' % p)) | |
| 1266 self.assertTrue('0008,0018' in DoGet(_REMOTE, '/instances/%s/module' % a)) | |
| 1267 self.assertTrue('SOPInstanceUID' in DoGet(_REMOTE, '/instances/%s/module?simplify' % a)) | |
| 1268 | |
| 1269 | |
| 1270 def test_auto_directory(self): | |
| 1271 a = UploadInstance(_REMOTE, 'Knee/T1/IM-0001-0001.dcm')['ID'] | |
| 1272 self.assertTrue('now' in DoGet(_REMOTE, '/tools')) | |
| 1273 self.assertTrue('dicom-conformance' in DoGet(_REMOTE, '/tools')) | |
| 1274 self.assertTrue(len(DoGet(_REMOTE, '/tools/dicom-conformance')) > 1000) | |
| 1275 self.assertTrue('orthanctest' in DoGet(_REMOTE, '/modalities')) | |
| 1276 self.assertTrue('echo' in DoGet(_REMOTE, '/modalities/orthanctest')) | |
| 1277 self.assertTrue('find' in DoGet(_REMOTE, '/modalities/orthanctest')) | |
| 1278 self.assertTrue('find-instance' in DoGet(_REMOTE, '/modalities/orthanctest')) | |
| 1279 self.assertTrue('find-patient' in DoGet(_REMOTE, '/modalities/orthanctest')) | |
| 1280 self.assertTrue('find-series' in DoGet(_REMOTE, '/modalities/orthanctest')) | |
| 1281 self.assertTrue('find-study' in DoGet(_REMOTE, '/modalities/orthanctest')) | |
| 1282 self.assertTrue('store' in DoGet(_REMOTE, '/modalities/orthanctest')) | |
| 1283 self.assertTrue('store' in DoGet(_REMOTE, '/peers/peer')) | |
| 1284 self.assertTrue('matlab' in DoGet(_REMOTE, '/instances/%s/frames/0' % a)) | |
| 1285 self.assertRaises(Exception, lambda: DoGet(_REMOTE, '/tools/nope')) | |
| 28 | 1286 self.assertRaises(Exception, lambda: DoGet(_REMOTE, '/nope')) |
| 1287 self.assertRaises(Exception, lambda: DoGet(_REMOTE, '/nope/nope.html')) | |
| 1288 self.assertEqual(404, DoGetRaw(_REMOTE, '/nope')[0].status) | |
| 1289 self.assertEqual(404, DoGetRaw(_REMOTE, '/nope/nope.html')[0].status) | |
| 13 | 1290 |
| 1291 | |
| 1292 def test_echo(self): | |
| 1293 DoPost(_REMOTE, '/modalities/orthanctest/echo') | |
| 1294 | |
| 1295 | |
| 1296 def test_xml(self): | |
| 1297 json = DoGet(_REMOTE, '/tools', headers = { 'accept' : 'application/json' }) | |
| 1298 xml = minidom.parseString(DoGet(_REMOTE, '/tools', headers = { 'accept' : 'application/xml' })) | |
| 1299 items = xml.getElementsByTagName('root')[0].getElementsByTagName('item') | |
| 1300 self.assertEqual(len(items), len(json)) | |
| 1301 | |
| 1302 self.assertTrue('dicom-conformance' in json) | |
| 1303 | |
| 1304 ok = False | |
| 1305 for i in items: | |
| 1306 if i.childNodes[0].data == 'dicom-conformance': | |
| 1307 ok = True | |
| 1308 self.assertTrue(ok) | |
| 1309 | |
| 1310 | |
| 1311 def test_issue_16(self): | |
| 1312 i = UploadInstance(_REMOTE, 'Issue16.dcm')['ID'] | |
| 1313 t = DoGet(_REMOTE, '/instances/%s/tags?simplify' % i)['FrameIncrementPointer'] | |
| 1314 self.assertEqual('0018,1063', t) | |
| 1315 | |
| 1316 | |
| 1317 def test_issue_22(self): | |
| 1318 s = UploadInstance(_REMOTE, 'Issue22.dcm')['ID'] | |
| 1319 a = [ | |
| 1320 "f804691f62197040438f4627c6b994f1", # Frame 0 | |
| 1321 "c69eee9a51eea3e8611e82e578897254", | |
| 1322 "315666be83e2d0111c77bc0996d84901", | |
| 1323 "3e27aa959d911172c48a1436443c72b1", | |
| 1324 "958642c9e7e9d232d3869faff546058c", | |
| 1325 "5e7ea8e3e4230cae707d143481355c59", | |
| 1326 "eda37f83558d858a596175aed8b2ad47", | |
| 1327 "486713bd2895c4ecbe0e97715ac7f80a", | |
| 1328 "091ef729eb169e67da8a0faa9631f9a8", | |
| 1329 "5aa2b8c7ffe0a483efaa8e12417686ca", | |
| 1330 "e2f39e85896fe58876654b94cd0b5013", | |
| 1331 "6fd2129e4950abbe1be053bc814d5da8", | |
| 1332 "c3331a8ba7a757f3d423735ab7fa81f9", | |
| 1333 "746f808582156734dd6b6fdfd3a0b72c", | |
| 1334 "8075ea2b227a70c60ea6b7b75a6bb190", | |
| 1335 "806b8b3e300c615099c11a5ec23465aa", | |
| 1336 "7c836aa298ba6eef96434579af631a11", | |
| 1337 "a0357dc9f4f72d73a885c33d7c287446", | |
| 1338 "f25ba3be1cc7d7fad95706adc199ea7d", | |
| 1339 "8b114c526b8cbed6cad8a3248b7b480c", | |
| 1340 "44e6670f127e612a2b4aa60a0d207698", | |
| 1341 "b8945f90fe02facf2ace24ca1ecbe0a5", | |
| 1342 "95c796c2fa8f59018b15cf2987b1f79b", | |
| 1343 "ce0a51ab30224205b44920221dc27351", # Frame 23 | |
| 1344 ] | |
| 1345 | |
| 1346 self.assertEqual(24, len(DoGet(_REMOTE, '/instances/%s/frames' % s))) | |
| 1347 self.assertRaises(Exception, lambda: DoGet(_REMOTE, '/instances/%s/frames/24/preview' % s)) | |
| 1348 | |
| 1349 for i in range(len(a)): | |
| 1350 self.assertEqual(a[i], ComputeMD5(DoGet(_REMOTE, '/instances/%s/frames/%d/preview' % (s, i)))) | |
| 1351 | |
| 1352 | |
| 1353 def test_issue_19(self): | |
|
21
2a29bcff60a7
tests of image decoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
18
diff
changeset
|
1354 # This is an image with "YBR_FULL" photometric interpretation, it is not supported by Orthanc |
| 13 | 1355 # gdcmconv -i /home/jodogne/DICOM/GdcmDatabase/US_DataSet/HDI5000_US/3EAF5E01 -w -o Issue19.dcm |
| 1356 | |
| 1357 a = UploadInstance(_REMOTE, 'Issue19.dcm')['ID'] | |
|
21
2a29bcff60a7
tests of image decoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
18
diff
changeset
|
1358 self.assertRaises(Exception, lambda: DoGet(_REMOTE, '/instances/941ad3c8-05d05b88-560459f9-0eae0e20-6cddd533/preview')) |
| 13 | 1359 |
| 1360 | |
| 1361 def test_issue_37(self): | |
| 1362 # Same test for issues 35 and 37. Fixed in Orthanc 0.9.1 | |
| 1363 u = UploadInstance(_REMOTE, 'Beaufix/IM-0001-0001.dcm')['ID'] | |
| 1364 | |
| 1365 a = DoPost(_REMOTE, '/tools/find', { 'Level' : 'Series', | |
| 1366 'CaseSensitive' : True, | |
| 1367 'Query' : { 'StationName' : 'SMR4-MP3' }}) | |
| 1368 self.assertEqual(1, len(a)) | |
| 14 | 1369 |
| 1370 | |
| 1371 def test_rest_find(self): | |
| 1372 # Upload 8 instances | |
| 1373 for i in range(2): | |
| 1374 UploadInstance(_REMOTE, 'Brainix/Flair/IM-0001-000%d.dcm' % (i + 1)) | |
| 1375 UploadInstance(_REMOTE, 'Brainix/Epi/IM-0001-000%d.dcm' % (i + 1)) | |
| 1376 UploadInstance(_REMOTE, 'Knee/T1/IM-0001-000%d.dcm' % (i + 1)) | |
| 1377 UploadInstance(_REMOTE, 'Knee/T2/IM-0001-000%d.dcm' % (i + 1)) | |
| 1378 | |
| 1379 a = DoPost(_REMOTE, '/tools/find', { 'Level' : 'Patient', | |
| 1380 'CaseSensitive' : False, | |
| 1381 'Query' : { 'PatientName' : '*n*' }}) | |
| 1382 self.assertEqual(2, len(a)) | |
| 1383 | |
| 1384 a = DoPost(_REMOTE, '/tools/find', { 'Level' : 'Patient', | |
| 1385 'CaseSensitive' : True, | |
| 1386 'Query' : { 'PatientName' : '*n*' }}) | |
| 1387 self.assertEqual(0, len(a)) | |
| 1388 | |
| 1389 a = DoPost(_REMOTE, '/tools/find', { 'Expand' : True, | |
| 1390 'Level' : 'Patient', | |
| 1391 'CaseSensitive' : False, | |
| 1392 'Query' : { 'PatientName' : '*ne*' }}) | |
| 1393 self.assertEqual(1, len(a)) | |
| 1394 self.assertEqual('20080822', a[0]['MainDicomTags']['PatientBirthDate']) | |
| 1395 | |
| 1396 a = DoPost(_REMOTE, '/tools/find', { 'Level' : 'Patient', | |
| 1397 'CaseSensitive' : True, | |
| 1398 'Query' : { 'PatientName' : '*ne*' }}) | |
| 1399 self.assertEqual(0, len(a)) | |
| 1400 | |
| 1401 a = DoPost(_REMOTE, '/tools/find', { 'Level' : 'Study', | |
| 1402 'CaseSensitive' : True, | |
| 1403 'Query' : { 'PatientName' : '*NE*' }}) | |
| 1404 self.assertEqual(1, len(a)) | |
| 1405 | |
| 1406 a = DoPost(_REMOTE, '/tools/find', { 'Level' : 'Series', | |
| 1407 'CaseSensitive' : True, | |
| 1408 'Query' : { 'PatientName' : '*NE*' }}) | |
| 1409 self.assertEqual(2, len(a)) | |
| 1410 | |
| 1411 a = DoPost(_REMOTE, '/tools/find', { 'Level' : 'Instance', | |
| 1412 'CaseSensitive' : True, | |
| 1413 'Query' : { 'PatientName' : '*NE*' }}) | |
| 1414 self.assertEqual(4, len(a)) | |
| 1415 | |
| 1416 a = DoPost(_REMOTE, '/tools/find', { 'Level' : 'Patient', 'Query' : { }}) | |
| 1417 self.assertEqual(2, len(a)) | |
| 1418 | |
| 1419 a = DoPost(_REMOTE, '/tools/find', { 'Level' : 'Study', 'Query' : { }}) | |
| 1420 self.assertEqual(2, len(a)) | |
| 1421 | |
| 1422 a = DoPost(_REMOTE, '/tools/find', { 'Level' : 'Series', 'Query' : { }}) | |
| 1423 self.assertEqual(4, len(a)) | |
| 1424 | |
| 1425 a = DoPost(_REMOTE, '/tools/find', { 'Level' : 'Instance', 'Query' : { }}) | |
| 1426 self.assertEqual(8, len(a)) | |
| 1427 | |
| 1428 | |
| 1429 def test_rest_query_retrieve(self): | |
| 1430 self.assertEqual(0, len(DoGet(_REMOTE, '/patients'))) | |
| 1431 | |
| 1432 # Upload 8 instances | |
| 1433 for i in range(2): | |
| 1434 UploadInstance(_REMOTE, 'Brainix/Flair/IM-0001-000%d.dcm' % (i + 1)) | |
| 1435 UploadInstance(_REMOTE, 'Brainix/Epi/IM-0001-000%d.dcm' % (i + 1)) | |
| 1436 UploadInstance(_REMOTE, 'Knee/T1/IM-0001-000%d.dcm' % (i + 1)) | |
| 1437 UploadInstance(_REMOTE, 'Knee/T2/IM-0001-000%d.dcm' % (i + 1)) | |
| 1438 | |
| 1439 self.assertEqual(2, len(DoGet(_REMOTE, '/patients'))) | |
| 1440 for p in DoGet(_REMOTE, '/patients'): | |
| 1441 DoPost(_REMOTE, '/modalities/orthanctest/store', p) | |
| 1442 DoDelete(_REMOTE, '/patients/%s' % p) | |
| 1443 | |
| 1444 for q in DoGet(_REMOTE, '/queries'): | |
| 1445 DoDelete(_REMOTE, '/queries/%s' % q) | |
| 1446 | |
| 1447 self.assertEqual(0, len(DoGet(_REMOTE, '/patients'))) | |
| 1448 self.assertEqual(0, len(DoGet(_REMOTE, '/queries'))) | |
| 1449 a = DoPost(_REMOTE, '/modalities/orthanctest/query', { 'Level' : 'Series', | |
| 27 | 1450 'Query' : { |
| 1451 'PatientName' : '*NE*', | |
| 1452 'StudyDate' : '*', | |
| 1453 }})['ID'] | |
| 14 | 1454 self.assertEqual(1, len(DoGet(_REMOTE, '/queries'))) |
| 1455 | |
| 1456 b = DoGet(_REMOTE, '/queries/%s' % a) | |
| 1457 self.assertTrue('answers' in b) | |
| 1458 self.assertTrue('level' in b) | |
| 1459 self.assertTrue('modality' in b) | |
| 1460 self.assertTrue('query' in b) | |
| 1461 self.assertTrue('retrieve' in b) | |
| 1462 self.assertEqual('Series', DoGet(_REMOTE, '/queries/%s/level' % a)) | |
| 1463 self.assertEqual('orthanctest', DoGet(_REMOTE, '/queries/%s/modality' % a)) | |
| 1464 | |
| 1465 q = DoGet(_REMOTE, '/queries/%s/query?simplify' % a) | |
| 27 | 1466 self.assertEqual(2, len(q)) |
| 14 | 1467 self.assertTrue('PatientName' in q) |
| 27 | 1468 self.assertTrue('StudyDate' in q) |
| 14 | 1469 self.assertEqual('*NE*', q['PatientName']) |
| 27 | 1470 self.assertEqual('*', q['StudyDate']) |
| 14 | 1471 |
| 1472 self.assertEqual(2, len(DoGet(_REMOTE, '/queries/%s/answers' % a))) | |
| 1473 | |
| 1474 s = DoGet(_REMOTE, '/queries/%s/answers/0' % a) | |
| 1475 self.assertTrue('content' in s) | |
| 1476 self.assertTrue('retrieve' in s) | |
| 1477 | |
| 1478 s = DoGet(_REMOTE, '/queries/%s/answers/0/content?simplify' % a) | |
| 1479 self.assertEqual('887', s['PatientID']) | |
| 1480 self.assertEqual('2.16.840.1.113669.632.20.121711.10000160881', s['StudyInstanceUID']) | |
| 1481 | |
| 1482 self.assertEqual(0, len(DoGet(_REMOTE, '/patients'))) | |
| 1483 DoPost(_REMOTE, '/queries/%s/answers/0/retrieve' % a, 'ORTHANC') | |
| 1484 self.assertEqual(1, len(DoGet(_REMOTE, '/patients'))) | |
| 1485 self.assertEqual(1, len(DoGet(_REMOTE, '/studies'))) | |
| 1486 self.assertEqual(1, len(DoGet(_REMOTE, '/series'))) | |
| 1487 self.assertEqual(2, len(DoGet(_REMOTE, '/instances'))) | |
| 1488 | |
| 1489 DoPost(_REMOTE, '/queries/%s/answers/1/retrieve' % a, 'ORTHANC') | |
| 1490 self.assertEqual(1, len(DoGet(_REMOTE, '/patients'))) | |
| 1491 self.assertEqual(1, len(DoGet(_REMOTE, '/studies'))) | |
| 1492 self.assertEqual(2, len(DoGet(_REMOTE, '/series'))) | |
| 1493 self.assertEqual(4, len(DoGet(_REMOTE, '/instances'))) | |
| 1494 | |
| 1495 DoDelete(_REMOTE, '/queries/%s' % a) | |
| 1496 self.assertEqual(0, len(DoGet(_REMOTE, '/queries'))) | |
| 1497 | |
| 1498 | |
| 1499 def test_parent(self): | |
| 1500 u = UploadInstance(_REMOTE, 'DummyCT.dcm')['ID'] | |
| 1501 patient = '6816cb19-844d5aee-85245eba-28e841e6-2414fae2' | |
| 1502 study = 'b9c08539-26f93bde-c81ab0d7-bffaf2cb-a4d0bdd0' | |
| 1503 series = 'f2635388-f01d497a-15f7c06b-ad7dba06-c4c599fe' | |
| 1504 instance = '66a662ce-7430e543-bad44d47-0dc5a943-ec7a538d' | |
| 1505 self.assertEqual(instance, u); | |
| 1506 | |
| 1507 a = DoGet(_REMOTE, '/studies/%s/patient' % study) | |
| 1508 self.assertEqual('Patient', a['Type']) | |
| 1509 self.assertEqual(patient, a['ID']) | |
| 1510 | |
| 1511 a = DoGet(_REMOTE, '/series/%s/patient' % series) | |
| 1512 self.assertEqual('Patient', a['Type']) | |
| 1513 self.assertEqual(patient, a['ID']) | |
| 1514 | |
| 1515 a = DoGet(_REMOTE, '/series/%s/study' % series) | |
| 1516 self.assertEqual('Study', a['Type']) | |
| 1517 self.assertEqual(study, a['ID']) | |
| 1518 | |
| 1519 a = DoGet(_REMOTE, '/instances/%s/patient' % instance) | |
| 1520 self.assertEqual('Patient', a['Type']) | |
| 1521 self.assertEqual(patient, a['ID']) | |
| 1522 | |
| 1523 a = DoGet(_REMOTE, '/instances/%s/study' % instance) | |
| 1524 self.assertEqual('Study', a['Type']) | |
| 1525 self.assertEqual(study, a['ID']) | |
| 1526 | |
| 1527 a = DoGet(_REMOTE, '/instances/%s/series' % instance) | |
| 1528 self.assertEqual('Series', a['Type']) | |
| 1529 self.assertEqual(series, a['ID']) | |
| 1530 | |
| 1531 | |
| 1532 def test_shanon(self): | |
| 1533 def Anonymize(instance, replacements = {}): | |
| 1534 return DoPost(_REMOTE, '/instances/%s/anonymize' % instance, { 'Replace' : replacements }, 'application/json') | |
| 1535 | |
| 1536 self.assertEqual(0, len(DoGet(_REMOTE, '/instances'))) | |
| 1537 u = UploadInstance(_REMOTE, 'DummyCT.dcm')['ID'] | |
| 1538 self.assertEqual(1, len(DoGet(_REMOTE, '/instances'))) | |
| 1539 | |
| 1540 tags = [ 'PatientID', 'StudyInstanceUID', 'SeriesInstanceUID', 'SOPInstanceUID', 'DeidentificationMethod' ] | |
| 1541 ids = [ 'ozp00SjY2xG', | |
| 1542 '1.2.840.113619.2.176.2025.1499492.7391.1171285944.390', | |
| 1543 '1.2.840.113619.2.176.2025.1499492.7391.1171285944.394', | |
| 1544 '1.2.840.113619.2.176.2025.1499492.7040.1171286242.109' ] | |
| 1545 | |
| 1546 a = ExtractDicomTags(Anonymize(u), tags) | |
| 1547 for i in range(4): | |
| 1548 self.assertNotEqual(ids[i], a[i]) | |
| 1549 self.assertTrue(a[4].startswith('Orthanc')) | |
| 1550 | |
| 1551 a = ExtractDicomTags(Anonymize(u, { 'PatientName' : 'toto' }), tags) | |
| 1552 for i in range(4): | |
| 1553 self.assertNotEqual(ids[i], a[i]) | |
| 1554 self.assertFalse(a[4].startswith('Orthanc')) | |
| 1555 | |
| 1556 a = ExtractDicomTags(Anonymize(u, { 'SOPInstanceUID' : 'instance' }), tags) | |
| 1557 self.assertEqual('instance', a[3]) | |
| 1558 self.assertFalse(a[4].startswith('Orthanc')) | |
| 1559 | |
| 1560 a = ExtractDicomTags(Anonymize(u, { 'SeriesInstanceUID' : 'series' }), tags) | |
| 1561 self.assertEqual('series', a[2]) | |
| 1562 self.assertFalse(a[4].startswith('Orthanc')) | |
| 1563 | |
| 1564 a = ExtractDicomTags(Anonymize(u, { 'StudyInstanceUID' : 'study' }), tags) | |
| 1565 self.assertEqual('study', a[1]) | |
| 1566 self.assertFalse(a[4].startswith('Orthanc')) | |
| 1567 | |
| 1568 a = ExtractDicomTags(Anonymize(u, { 'PatientID' : 'patient' }), tags) | |
| 1569 self.assertEqual('patient', a[0]) | |
| 1570 self.assertFalse(a[4].startswith('Orthanc')) | |
| 1571 | |
| 1572 a = ExtractDicomTags(Anonymize(u, { 'PatientID' : 'patient', | |
| 1573 'StudyInstanceUID' : 'study', | |
| 1574 'SeriesInstanceUID' : 'series', | |
| 1575 'SOPInstanceUID' : 'instance' }), tags) | |
| 1576 self.assertEqual('patient', a[0]) | |
| 1577 self.assertFalse(a[4].startswith('Orthanc')) | |
| 1578 | |
| 1579 self.assertEqual(1, len(DoGet(_REMOTE, '/instances'))) | |
| 1580 | |
| 1581 | |
| 1582 def test_shanon_2(self): | |
| 1583 def Modify(instance, replacements = {}): | |
| 1584 return DoPost(_REMOTE, '/instances/%s/modify' % instance, { 'Replace' : replacements }, 'application/json') | |
| 1585 | |
| 1586 self.assertEqual(0, len(DoGet(_REMOTE, '/instances'))) | |
| 1587 u = UploadInstance(_REMOTE, 'DummyCT.dcm')['ID'] | |
| 1588 self.assertEqual(1, len(DoGet(_REMOTE, '/instances'))) | |
| 1589 | |
| 1590 tags = [ 'PatientID', 'StudyInstanceUID', 'SeriesInstanceUID', 'SOPInstanceUID', 'DeidentificationMethod' ] | |
| 1591 ids = [ 'ozp00SjY2xG', | |
| 1592 '1.2.840.113619.2.176.2025.1499492.7391.1171285944.390', | |
| 1593 '1.2.840.113619.2.176.2025.1499492.7391.1171285944.394', | |
| 1594 '1.2.840.113619.2.176.2025.1499492.7040.1171286242.109' ] | |
| 1595 | |
| 1596 a = ExtractDicomTags(Modify(u), tags) | |
| 1597 self.assertEqual(ids[0], a[0]) | |
| 1598 self.assertEqual(ids[1], a[1]) | |
| 1599 self.assertEqual(ids[2], a[2]) | |
| 1600 self.assertNotEqual(ids[3], a[3]) | |
| 1601 self.assertEqual(0, len(a[4])) | |
| 1602 | |
| 1603 a = ExtractDicomTags(Modify(u, { 'SOPInstanceUID' : 'instance' }), tags) | |
| 1604 self.assertEqual(ids[0], a[0]) | |
| 1605 self.assertEqual(ids[1], a[1]) | |
| 1606 self.assertEqual(ids[2], a[2]) | |
| 1607 self.assertEqual('instance', a[3]) | |
| 1608 | |
| 1609 a = ExtractDicomTags(Modify(u, { 'SeriesInstanceUID' : 'series' }), tags) | |
| 1610 self.assertEqual(ids[0], a[0]) | |
| 1611 self.assertEqual(ids[1], a[1]) | |
| 1612 self.assertEqual('series', a[2]) | |
| 1613 self.assertNotEqual(ids[3], a[3]) | |
| 1614 | |
| 1615 a = ExtractDicomTags(Modify(u, { 'StudyInstanceUID' : 'study' }), tags) | |
| 1616 self.assertEqual(ids[0], a[0]) | |
| 1617 self.assertEqual('study', a[1]) | |
| 1618 self.assertNotEqual(ids[2], a[2]) | |
| 1619 self.assertNotEqual(ids[3], a[3]) | |
| 1620 | |
| 1621 a = ExtractDicomTags(Modify(u, { 'PatientID' : 'patient' }), tags) | |
| 1622 self.assertEqual('patient', a[0]) | |
| 1623 self.assertNotEqual(ids[1], a[1]) | |
| 1624 self.assertNotEqual(ids[2], a[2]) | |
| 1625 self.assertNotEqual(ids[3], a[3]) | |
| 1626 | |
| 1627 a = ExtractDicomTags(Modify(u, { 'PatientID' : 'patient', | |
| 1628 'StudyInstanceUID' : 'study', | |
| 1629 'SeriesInstanceUID' : 'series', | |
| 1630 'SOPInstanceUID' : 'instance' }), tags) | |
| 1631 self.assertEqual('patient', a[0]) | |
| 1632 self.assertEqual('study', a[1]) | |
| 1633 self.assertEqual('series', a[2]) | |
| 1634 self.assertEqual('instance', a[3]) | |
| 1635 | |
| 1636 self.assertEqual(1, len(DoGet(_REMOTE, '/instances'))) | |
| 1637 | |
| 1638 | |
| 1639 def test_instances_tags(self): | |
| 1640 a = UploadInstance(_REMOTE, 'Knee/T1/IM-0001-0001.dcm')['ID'] | |
| 1641 b = UploadInstance(_REMOTE, 'Knee/T2/IM-0001-0001.dcm')['ID'] | |
| 1642 #a = UploadInstance(_REMOTE, 'Cardiac/MR.X.1.2.276.0.7230010.3.1.4.2831157719.2256.1336386937.676343')['ID'] | |
| 1643 #b = UploadInstance(_REMOTE, 'Cardiac/MR.X.1.2.276.0.7230010.3.1.4.2831157719.2256.1336386925.676329')['ID'] | |
| 1644 | |
| 1645 i = DoGet(_REMOTE, '/patients/%s/instances-tags?simplify' % DoGet(_REMOTE, '/patients')[0]) | |
| 1646 self.assertEqual(2, len(i)) | |
| 1647 self.assertEqual('887', i[i.keys()[0]]['PatientID']) | |
| 1648 self.assertEqual('887', i[i.keys()[1]]['PatientID']) | |
| 1649 | |
| 1650 i = DoGet(_REMOTE, '/patients/%s/instances-tags?simplify' % DoGet(_REMOTE, '/studies')[0]) | |
| 1651 self.assertEqual(2, len(i)) | |
| 1652 self.assertEqual('887', i[i.keys()[0]]['PatientID']) | |
| 1653 self.assertEqual('887', i[i.keys()[1]]['PatientID']) | |
| 1654 | |
| 1655 self.assertEqual(2, len(DoGet(_REMOTE, '/series'))) | |
| 1656 i = DoGet(_REMOTE, '/patients/%s/instances-tags?simplify' % DoGet(_REMOTE, '/series')[0]) | |
| 1657 self.assertEqual(1, len(i)) | |
| 1658 self.assertEqual('887', i[i.keys()[0]]['PatientID']) | |
| 1659 | |
| 1660 i = DoGet(_REMOTE, '/patients/%s/instances-tags?simplify' % DoGet(_REMOTE, '/series')[1]) | |
| 1661 self.assertEqual(1, len(i)) | |
| 1662 self.assertEqual('887', i[i.keys()[0]]['PatientID']) | |
| 1663 | |
| 1664 | |
| 1665 def test_lookup(self): | |
| 1666 a = DoPost(_REMOTE, '/tools/lookup', 'ozp00SjY2xG') | |
| 1667 self.assertEqual(0, len(a)) | |
| 1668 | |
| 1669 UploadInstance(_REMOTE, 'DummyCT.dcm') | |
| 1670 | |
| 1671 a = DoPost(_REMOTE, '/tools/lookup', 'ozp00SjY2xG') | |
| 1672 self.assertEqual(1, len(a)) | |
| 1673 self.assertEqual('Patient', a[0]['Type']) | |
| 1674 self.assertEqual('6816cb19-844d5aee-85245eba-28e841e6-2414fae2', a[0]['ID']) | |
| 1675 self.assertEqual('/patients/%s' % a[0]['ID'], a[0]['Path']) | |
| 1676 | |
| 1677 a = DoPost(_REMOTE, '/tools/lookup', '1.2.840.113619.2.176.2025.1499492.7391.1171285944.390') | |
| 1678 self.assertEqual(1, len(a)) | |
| 1679 self.assertEqual('Study', a[0]['Type']) | |
| 1680 self.assertEqual('b9c08539-26f93bde-c81ab0d7-bffaf2cb-a4d0bdd0', a[0]['ID']) | |
| 1681 self.assertEqual('/studies/%s' % a[0]['ID'], a[0]['Path']) | |
| 1682 | |
| 1683 a = DoPost(_REMOTE, '/tools/lookup', '1.2.840.113619.2.176.2025.1499492.7391.1171285944.394') | |
| 1684 self.assertEqual(1, len(a)) | |
| 1685 self.assertEqual('Series', a[0]['Type']) | |
| 1686 self.assertEqual('f2635388-f01d497a-15f7c06b-ad7dba06-c4c599fe', a[0]['ID']) | |
| 1687 self.assertEqual('/series/%s' % a[0]['ID'], a[0]['Path']) | |
| 1688 | |
| 1689 a = DoPost(_REMOTE, '/tools/lookup', '1.2.840.113619.2.176.2025.1499492.7040.1171286242.109') | |
| 1690 self.assertEqual(1, len(a)) | |
| 1691 self.assertEqual('Instance', a[0]['Type']) | |
| 1692 self.assertEqual('66a662ce-7430e543-bad44d47-0dc5a943-ec7a538d', a[0]['ID']) | |
| 1693 self.assertEqual('/instances/%s' % a[0]['ID'], a[0]['Path']) | |
| 1694 | |
| 1695 DropOrthanc(_REMOTE) | |
| 1696 a = DoPost(_REMOTE, '/tools/lookup', '3113719P') | |
| 1697 self.assertEqual(0, len(a)) | |
| 1698 | |
| 15 | 1699 |
| 1700 def test_autorouting(self): | |
| 1701 knee1 = 'Knee/T1/IM-0001-0001.dcm' | |
| 1702 knee2 = 'Knee/T2/IM-0001-0002.dcm' | |
| 1703 other = 'Brainix/Flair/IM-0001-0001.dcm' | |
| 1704 | |
| 1705 # Check that this version is >= 0.8.0 | |
| 1706 self.assertTrue(IsDefinedInLua(_REMOTE, '_InitializeJob')) | |
| 1707 self.assertTrue('orthanctest' in DoGet(_REMOTE, '/modalities')) | |
| 1708 | |
| 1709 UploadInstance(_REMOTE, knee1) | |
| 1710 self.assertEqual(0, len(DoGet(_LOCAL, '/instances'))) | |
| 1711 | |
| 1712 DropOrthanc(_REMOTE) | |
| 1713 DropOrthanc(_LOCAL) | |
| 1714 InstallLuaScript('Lua/Autorouting.lua') | |
| 1715 UploadInstance(_REMOTE, knee1) | |
| 1716 UploadInstance(_REMOTE, knee2) | |
| 1717 UploadInstance(_REMOTE, other) | |
| 1718 WaitEmpty(_REMOTE) | |
| 1719 UninstallLuaCallbacks() | |
| 1720 self.assertEqual(3, len(DoGet(_LOCAL, '/instances'))) | |
| 1721 | |
| 1722 DropOrthanc(_REMOTE) | |
| 1723 DropOrthanc(_LOCAL) | |
| 1724 InstallLuaScript('Lua/AutoroutingConditional.lua') | |
| 1725 UploadInstance(_REMOTE, knee1) | |
| 1726 UploadInstance(_REMOTE, knee2) | |
| 1727 UploadInstance(_REMOTE, other) | |
| 1728 WaitEmpty(_REMOTE) | |
| 1729 UninstallLuaCallbacks() | |
| 1730 self.assertEqual(2, len(DoGet(_LOCAL, '/instances'))) | |
| 1731 | |
| 1732 DropOrthanc(_REMOTE) | |
| 1733 DropOrthanc(_LOCAL) | |
| 1734 InstallLuaScript('Lua/AutoroutingModification.lua') | |
| 1735 UploadInstance(_REMOTE, knee1) | |
| 1736 WaitEmpty(_REMOTE) | |
| 1737 UninstallLuaCallbacks() | |
| 1738 i = DoGet(_LOCAL, '/instances') | |
| 1739 self.assertEqual(1, len(i)) | |
| 1740 | |
| 1741 with tempfile.NamedTemporaryFile(delete = True) as f: | |
| 1742 f.write(DoGet(_LOCAL, '/instances/%s/file' % i[0])) | |
| 1743 f.flush() | |
| 1744 routed = subprocess.check_output([ 'dcm2xml', f.name ]) | |
| 1745 self.assertEqual('My Medical Device', re.search('"StationName">(.*?)<', routed).group(1).strip()) | |
| 1746 self.assertEqual(None, re.search('"MilitaryRank"', routed)) | |
| 1747 self.assertEqual(None, re.search('"0051,0010"', routed)) # A private tag | |
| 17 | 1748 |
| 1749 | |
| 1750 def test_storescu_rf(self): | |
| 1751 i = UploadInstance(_REMOTE, 'KarstenHilbertRF.dcm')['ID'] | |
| 1752 self.assertEqual(0, len(DoGet(_LOCAL, '/instances'))) | |
| 1753 j = DoPost(_REMOTE, '/modalities/orthanctest/store', str(i), 'text/plain') | |
| 1754 self.assertEqual(1, len(DoGet(_LOCAL, '/instances'))) | |
| 18 | 1755 |
| 1756 | |
| 1757 def test_anonymize_instance(self): | |
| 1758 def AnonymizeAndUpload(instanceId, parameters): | |
| 1759 return DoPost(_REMOTE, '/instances', DoPost(_REMOTE, '/instances/%s/anonymize' % instanceId, parameters, | |
| 1760 'application/json'), 'application/dicom')['ID'] | |
| 1761 | |
| 1762 def ModifyAndUpload(instanceId, parameters): | |
| 1763 return DoPost(_REMOTE, '/instances', DoPost(_REMOTE, '/instances/%s/modify' % instanceId, parameters, | |
| 1764 'application/json'), 'application/dicom')['ID'] | |
| 1765 | |
| 1766 a = UploadInstance(_REMOTE, 'PrivateMDNTags.dcm')['ID'] | |
| 1767 s1 = DoGet(_REMOTE, '/instances/%s/content/PatientName' % a) | |
| 1768 s2 = DoGet(_REMOTE, '/instances/%s/content/00e1-10c2' % a) # Some private tag | |
| 1769 s3 = DoGet(_REMOTE, '/instances/%s/content/StudyDescription' % a) | |
| 1770 s4 = DoGet(_REMOTE, '/instances/%s/content/SeriesDescription' % a) | |
| 1771 s5 = DoGet(_REMOTE, '/instances/%s/content/InstitutionName' % a) | |
| 1772 | |
| 1773 b = AnonymizeAndUpload(a, '{}') | |
| 1774 self.assertNotEqual(s1, DoGet(_REMOTE, '/instances/%s/content/PatientName' % b)) | |
| 1775 self.assertRaises(Exception, lambda: DoGet(_REMOTE, '/instances/%s/content/00e1-10c2' % b)) | |
| 1776 | |
| 1777 # Keep private tag (only OK since Orthanc 0.8.0) | |
| 1778 b = AnonymizeAndUpload(a, '{"Keep":["00e1-10c2"]}') | |
| 1779 self.assertNotEqual(s1, DoGet(_REMOTE, '/instances/%s/content/PatientName' % b)) | |
| 1780 self.assertEqual(s2, DoGet(_REMOTE, '/instances/%s/content/00e1-10c2' % b)) | |
| 1781 | |
| 1782 b = AnonymizeAndUpload(a, '{"Keep":["00e1,10c2","PatientName"]}') | |
| 1783 self.assertEqual(s1, DoGet(_REMOTE, '/instances/%s/content/PatientName' % b)) | |
| 1784 self.assertEqual(s2, DoGet(_REMOTE, '/instances/%s/content/00e1-10c2' % b)) | |
| 1785 | |
| 1786 b = AnonymizeAndUpload(a, '{"Keep":["PatientName"],"Replace":{"00e1,10c2":"Hello"}}') | |
| 1787 self.assertEqual(s1, DoGet(_REMOTE, '/instances/%s/content/PatientName' % b)) | |
| 1788 self.assertTrue(DoGet(_REMOTE, '/instances/%s/content/00e1-10c2' % b).startswith('Hello')) | |
| 1789 | |
| 1790 # Examples from the Wiki | |
| 1791 b = AnonymizeAndUpload(a, '{"Replace":{"PatientName":"hello","0010-0020":"world"},"Keep":["StudyDescription", "SeriesDescription"],"KeepPrivateTags": null}') | |
| 1792 self.assertEqual('hello', DoGet(_REMOTE, '/instances/%s/content/0010-0010' % b).strip()) | |
| 1793 self.assertEqual('world', DoGet(_REMOTE, '/instances/%s/content/PatientID' % b).strip()) | |
| 1794 self.assertEqual(s3, DoGet(_REMOTE, '/instances/%s/content/0008,1030' % b)) | |
| 1795 self.assertEqual(s4, DoGet(_REMOTE, '/instances/%s/content/0008,103e' % b)) | |
| 1796 self.assertEqual(s4, DoGet(_REMOTE, '/instances/%s/content/0008-103E' % b)) | |
| 1797 self.assertEqual(s2, DoGet(_REMOTE, '/instances/%s/content/00e1-10c2' % b)) | |
| 1798 DoGet(_REMOTE, '/instances/%s/content/InstitutionName' % a) | |
| 1799 self.assertRaises(Exception, lambda: DoGet(_REMOTE, '/instances/%s/content/InstitutionName' % b)) | |
| 1800 | |
| 1801 b = ModifyAndUpload(a, '{"Replace":{"PatientName":"hello","PatientID":"world"},"Remove":["InstitutionName"],"RemovePrivateTags": null}') | |
| 1802 self.assertEqual('hello', DoGet(_REMOTE, '/instances/%s/content/0010-0010' % b).strip()) | |
| 1803 self.assertEqual('world', DoGet(_REMOTE, '/instances/%s/content/PatientID' % b).strip()) | |
| 1804 self.assertEqual(s3, DoGet(_REMOTE, '/instances/%s/content/0008,1030' % b)) | |
| 1805 self.assertEqual(s4, DoGet(_REMOTE, '/instances/%s/content/0008,103e' % b)) | |
| 1806 self.assertRaises(Exception, lambda: DoGet(_REMOTE, '/instances/%s/content/00e1-10c2' % b)) | |
| 1807 self.assertRaises(Exception, lambda: DoGet(_REMOTE, '/instances/%s/content/InstitutionName' % b)) | |
| 1808 | |
| 1809 b = ModifyAndUpload(a, '{"Replace":{"PatientName":"hello","PatientID":"world"}}') | |
| 1810 self.assertEqual('hello', DoGet(_REMOTE, '/instances/%s/content/0010-0010' % b).strip()) | |
| 1811 self.assertEqual('world', DoGet(_REMOTE, '/instances/%s/content/PatientID' % b).strip()) | |
| 1812 self.assertEqual(s2, DoGet(_REMOTE, '/instances/%s/content/00e1,10c2' % b)) | |
| 1813 self.assertEqual(s3, DoGet(_REMOTE, '/instances/%s/content/0008,1030' % b)) | |
| 1814 self.assertEqual(s4, DoGet(_REMOTE, '/instances/%s/content/0008-103E' % b)) | |
| 1815 self.assertEqual(s5, DoGet(_REMOTE, '/instances/%s/content/InstitutionName' % b)) | |
| 1816 | |
| 1817 | |
| 1818 # Test modify non-existing | |
| 1819 i = DoPost(_REMOTE, '/tools/create-dicom', | |
| 1820 json.dumps({ | |
| 1821 'PatientName' : 'Jodogne', | |
| 1822 'Modality' : 'CT', | |
| 1823 }))['ID'] | |
| 1824 | |
| 1825 self.assertEqual('Jodogne', DoGet(_REMOTE, '/instances/%s/content/PatientName' % i).strip()) | |
| 1826 self.assertRaises(Exception, lambda: DoGet(_REMOTE, '/instances/%s/content/StudyDescription' % i)) | |
| 1827 self.assertEqual('CT', DoGet(_REMOTE, '/instances/%s/content/Modality' % i).strip()) | |
| 1828 | |
| 1829 b = ModifyAndUpload(i, '{"Replace":{"StudyDescription":"hello","Modality":"world"}}') | |
| 1830 self.assertEqual('Jodogne', DoGet(_REMOTE, '/instances/%s/content/PatientName' % b).strip()) | |
| 1831 self.assertEqual('hello', DoGet(_REMOTE, '/instances/%s/content/StudyDescription' % b).strip()) | |
| 1832 self.assertEqual('world', DoGet(_REMOTE, '/instances/%s/content/Modality' % b).strip()) | |
| 1833 | |
|
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1834 |
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1835 def test_incoming_jpeg(self): |
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1836 def storescu(): |
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1837 with open(os.devnull, 'w') as FNULL: |
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1838 subprocess.check_call([ 'storescu', '-xs', |
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1839 _REMOTE['Server'], str(_REMOTE['DicomPort']), |
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1840 GetDatabasePath('Knix/Loc/IM-0001-0001.dcm') ], |
|
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|
1841 stderr = FNULL) |
|
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|
1842 |
|
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|
1843 self.assertEqual(0, len(DoGet(_REMOTE, '/patients'))) |
|
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18
diff
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|
1844 InstallLuaScript('Lua/TransferSyntaxDisable.lua') |
|
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18
diff
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|
1845 self.assertRaises(Exception, storescu) |
|
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18
diff
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|
1846 self.assertEqual(0, len(DoGet(_REMOTE, '/patients'))) |
|
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18
diff
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|
1847 InstallLuaScript('Lua/TransferSyntaxEnable.lua') |
|
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diff
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|
1848 storescu() |
|
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18
diff
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|
1849 self.assertEqual(1, len(DoGet(_REMOTE, '/patients'))) |
|
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diff
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|
1850 |
|
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diff
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|
1851 |
|
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diff
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|
1852 def test_storescu_jpeg(self): |
|
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|
1853 self.assertEqual(0, len(DoGet(_REMOTE, '/exports')['Exports'])) |
|
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|
1854 |
|
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diff
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|
1855 knixStudy = 'b9c08539-26f93bde-c81ab0d7-bffaf2cb-a4d0bdd0' |
|
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diff
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|
1856 UploadInstance(_REMOTE, 'Knix/Loc/IM-0001-0001.dcm') |
|
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diff
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|
1857 UploadInstance(_REMOTE, 'Knix/Loc/IM-0001-0002.dcm') |
|
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|
1858 UploadInstance(_REMOTE, 'Knix/Loc/IM-0001-0003.dcm') |
|
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|
1859 |
|
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|
1860 a = UploadInstance(_REMOTE, 'Brainix/Flair/IM-0001-0001.dcm')['ID'] |
|
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|
1861 b = UploadInstance(_REMOTE, 'ColorTestImageJ.dcm')['ID'] |
|
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diff
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|
1862 self.assertEqual(0, len(DoGet(_LOCAL, '/instances'))) |
|
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diff
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|
1863 DoPost(_REMOTE, '/modalities/orthanctest/store', [ knixStudy, a, b ]) |
|
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diff
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|
1864 self.assertEqual(5, len(DoGet(_LOCAL, '/instances'))) |
|
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diff
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|
1865 |
|
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|
1866 self.assertEqual(3, len(DoGet(_REMOTE, '/exports')['Exports'])) |
|
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diff
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|
1867 |
|
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|
1868 DropOrthanc(_REMOTE) |
|
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diff
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|
1869 self.assertEqual(0, len(DoGet(_REMOTE, '/exports')['Exports'])) |
|
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|
1870 |
|
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diff
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|
1871 |
|
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|
1872 def test_pixel_data(self): |
|
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18
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|
1873 jpeg = UploadInstance(_REMOTE, 'Knix/Loc/IM-0001-0001.dcm')['ID'] |
|
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|
1874 color = UploadInstance(_REMOTE, 'ColorTestImageJ.dcm')['ID'] |
|
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diff
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|
1875 phenix = UploadInstance(_REMOTE, 'Phenix/IM-0001-0001.dcm')['ID'] |
|
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diff
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|
1876 |
|
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diff
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|
1877 phenixSize = 358 * 512 * 2 |
|
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diff
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|
1878 colorSize = 1000 * 1000 * 3 |
|
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diff
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|
1879 jpegSize = 51918 |
|
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diff
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|
1880 |
|
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diff
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|
1881 self.assertEqual(1, len(DoGet(_REMOTE, '/instances/%s/content/7fe0-0010' % phenix))) |
|
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diff
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|
1882 self.assertEqual(1, len(DoGet(_REMOTE, '/instances/%s/content/7fe0-0010' % color))) |
|
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|
1883 self.assertEqual(2, len(DoGet(_REMOTE, '/instances/%s/content/7fe0-0010' % jpeg))) |
|
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|
1884 |
|
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|
1885 self.assertEqual(0, len(DoGet(_REMOTE, '/instances/%s/content/7fe0-0010/0' % jpeg))) |
|
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diff
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|
1886 self.assertEqual(jpegSize, len(DoGet(_REMOTE, '/instances/%s/content/7fe0-0010/1' % jpeg))) |
|
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diff
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|
1887 |
|
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|
1888 self.assertEqual(phenixSize, len(DoGet(_REMOTE, '/instances/%s/content/7fe0-0010/0' % phenix))) |
|
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|
1889 self.assertEqual(colorSize, len(DoGet(_REMOTE, '/instances/%s/content/7fe0-0010/0' % color))) |
|
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diff
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|
1890 |
|
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18
diff
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|
1891 |
|
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diff
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|
1892 def test_decode_brainix(self): |
|
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|
1893 brainix = [ |
|
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|
1894 UploadInstance(_REMOTE, 'Brainix/Epi/IM-0001-0001.dcm')['ID'], # (*) |
|
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diff
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|
1895 UploadInstance(_REMOTE, 'Formats/JpegLossless.dcm')['ID'], # JPEG-LS, same as (*) (since Orthanc 0.7.6) |
|
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|
1896 UploadInstance(_REMOTE, 'Formats/Jpeg.dcm')['ID'], # JPEG, same as (*) (since Orthanc 0.7.6) |
|
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diff
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|
1897 ] |
|
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|
1898 h = '6fb11b932d535c2be04beabd99793ff8' |
|
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diff
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|
1899 maxValue = 426.0 |
|
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|
1900 |
|
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diff
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|
1901 truth = Image.open(GetDatabasePath('Formats/Brainix.png')) |
|
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|
1902 for i in brainix: |
|
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|
1903 self.AssertSameImages(truth.getdata(), '/instances/%s/image-int16' % i) |
|
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|
1904 self.AssertSameImages(truth.getdata(), '/instances/%s/image-uint16' % i) |
|
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|
1905 |
|
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|
1906 truth2 = map(lambda x: min(255, x), truth.getdata()) |
|
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|
1907 for i in brainix: |
|
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diff
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|
1908 self.AssertSameImages(truth2, '/instances/%s/image-uint8' % i) |
|
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|
1909 |
|
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diff
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|
1910 truth2 = map(lambda x: x * 255.0 / maxValue, truth.getdata()) |
|
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|
1911 for i in brainix: |
|
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diff
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|
1912 self.AssertSameImages(truth2, '/instances/%s/preview' % i) |
|
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|
1913 |
|
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|
1914 for i in brainix: |
|
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diff
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|
1915 self.assertEqual(h, ComputeMD5(DoGet(_REMOTE, '/instances/%s/matlab' % i))) |
|
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|
1916 |
|
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diff
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|
1917 |
|
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|
1918 def test_decode_color(self): |
|
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1919 imagej = UploadInstance(_REMOTE, 'ColorTestImageJ.dcm')['ID'] |
|
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1920 color = UploadInstance(_REMOTE, 'ColorTestMalaterre.dcm')['ID'] |
|
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|
1921 |
|
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|
1922 for i in [ imagej, color ]: |
|
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|
1923 for j in [ 'image-uint8', 'image-uint16', 'image-int16' ]: |
|
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1924 self.assertRaises(Exception, lambda: DoGet(_REMOTE, '/instances/%s/%s' % (i, j))) |
|
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1925 |
|
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|
1926 self.assertEqual('c14c687f7a1ea9fe022479fc87c67274', ComputeMD5(DoGet(_REMOTE, '/instances/%s/preview' % imagej))) |
|
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|
1927 self.assertEqual('a87d122918a56f803bcfe9d2586b9125', ComputeMD5(DoGet(_REMOTE, '/instances/%s/preview' % color))) |
|
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1928 |
|
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|
1929 self.assertEqual('30cc46bfa7aba77a40e4178f6184c25a', ComputeMD5(DoGet(_REMOTE, '/instances/%s/matlab' % imagej))) |
|
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1930 self.assertEqual('ff195005cef06b59666fd220a9b4cd9a', ComputeMD5(DoGet(_REMOTE, '/instances/%s/matlab' % color))) |
|
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|
1931 |
|
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|
1932 |
|
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|
1933 def test_decode_rf(self): |
|
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|
1934 rf = UploadInstance(_REMOTE, 'KarstenHilbertRF.dcm')['ID'] |
|
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|
1935 truth = Image.open(GetDatabasePath('Formats/KarstenHilbertRF.png')) |
|
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|
1936 |
|
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|
1937 self.AssertSameImages(truth.getdata(), '/instances/%s/image-uint8' % rf) |
|
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|
1938 self.AssertSameImages(truth.getdata(), '/instances/%s/image-uint16' % rf) |
|
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1939 self.AssertSameImages(truth.getdata(), '/instances/%s/image-int16' % rf) |
|
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1940 self.AssertSameImages(truth.getdata(), '/instances/%s/preview' % rf) |
|
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|
1941 |
|
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diff
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|
1942 self.assertEqual('42254d70efd2f4a1b8f3455909689f0e', ComputeMD5(DoGet(_REMOTE, '/instances/%s/matlab' % rf))) |
|
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|
1943 |
|
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|
1944 |
|
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1945 def test_decode_multiframe(self): |
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1946 mf = UploadInstance(_REMOTE, 'Multiframe.dcm')['ID'] |
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1947 |
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1948 # Test the first frame |
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1949 truth = Image.open(GetDatabasePath('Formats/Multiframe0.png')) |
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1950 self.AssertSameImages(truth.getdata(), '/instances/%s/image-uint8' % mf) |
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1951 self.AssertSameImages(truth.getdata(), '/instances/%s/image-uint16' % mf) |
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1952 self.AssertSameImages(truth.getdata(), '/instances/%s/image-int16' % mf) |
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1953 self.AssertSameImages(truth.getdata(), '/instances/%s/preview' % mf) |
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1954 self.assertEqual('9812b99d93bbcd4e7684ded089b5dfb3', ComputeMD5(DoGet(_REMOTE, '/instances/%s/matlab' % mf))) |
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1955 |
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1956 self.AssertSameImages(truth.getdata(), '/instances/%s/frames/0/image-uint16' % mf) |
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1957 |
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1958 # Test the last frame |
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1959 truth = Image.open(GetDatabasePath('Formats/Multiframe75.png')) |
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1960 self.AssertSameImages(truth.getdata(), '/instances/%s/frames/75/image-uint16' % mf) |
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1961 |
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1962 |
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1963 def test_decode_signed(self): |
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1964 signed = UploadInstance(_REMOTE, 'SignedCT.dcm')['ID'] |
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1965 minValue = -2000 |
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1966 maxValue = 4042 |
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1967 |
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1968 truth = Image.open(GetDatabasePath('Formats/SignedCT.png')) |
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1969 self.AssertSameImages(truth.getdata(), '/instances/%s/image-int16' % signed) |
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1970 |
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1971 truth2 = map(lambda x: 0 if x >= 32768 else x, truth.getdata()) |
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1972 self.AssertSameImages(truth2, '/instances/%s/image-uint16' % signed) |
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1973 |
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1974 truth3 = map(lambda x: 255 if x >= 256 else x, truth2) |
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1975 self.AssertSameImages(truth3, '/instances/%s/image-uint8' % signed) |
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1976 |
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1977 tmp = map(lambda x: x - 65536 if x >= 32768 else x, truth.getdata()) |
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1978 tmp = map(lambda x: (255.0 * (x - minValue)) / (maxValue - minValue), tmp) |
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1979 self.AssertSameImages(tmp, '/instances/%s/preview' % signed) |
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1980 |
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1981 self.assertEqual('b57e6c872a3da50877c7da689b03a444', ComputeMD5(DoGet(_REMOTE, '/instances/%s/matlab' % signed))) |
| 22 | 1982 |
| 1983 | |
| 1984 def test_issue_32(self): | |
| 1985 f = UploadInstance(_REMOTE, 'Issue32.dcm')['ID'] | |
| 1986 tags = DoGet(_REMOTE, '/instances/%s/tags?simplify' % f) | |
| 1987 self.assertEqual(u'Рентгенография', tags['SeriesDescription']) | |
| 1988 self.assertEqual(u'Таз', tags['BodyPartExamined']) | |
| 1989 self.assertEqual(u'Прямая', tags['ViewPosition']) | |
| 1990 | |
| 1991 | |
| 1992 def test_encodings(self): | |
| 23 | 1993 # Latin-1 (ISO_IR 100) |
| 22 | 1994 brainix = UploadInstance(_REMOTE, 'Brainix/Epi/IM-0001-0001.dcm')['ID'] |
| 1995 tags = DoGet(_REMOTE, '/instances/%s/tags?simplify' % brainix) | |
| 1996 self.assertEqual(u'IRM cérébrale, neuro-crâne', tags['StudyDescription']) | |
| 23 | 1997 |
| 1998 # Latin-2 (ISO_IR 101) | |
| 1999 a = UploadInstance(_REMOTE, 'MarekLatin2.dcm')['ID'] | |
| 2000 i = DoGet(_REMOTE, '/instances/%s/simplified-tags' % a) | |
| 2001 # dcm2xml MarekLatin2.dcm | iconv -f latin2 -t utf-8 | xmllint --format - | |
| 2002 self.assertEqual('Imię i Nazwisko osoby opisującej', | |
| 2003 i['ContentSequence'][4]['ConceptNameCodeSequence'][0]['CodeMeaning'].encode('utf-8')) | |
| 2004 | |
|
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2005 |
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2006 def test_storescu_custom_aet(self): |
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2007 # This tests a feature introduced in Orthanc 0.9.1: "Custom |
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2008 # setting of the local AET during C-Store SCU (both in Lua and |
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2009 # in the REST API)." |
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2010 # https://groups.google.com/forum/#!msg/orthanc-users/o5qMULformU/wZjW2iSaMcAJ |
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2011 |
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2012 self.assertEqual(0, len(DoGet(_LOCAL, '/patients'))) |
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2013 |
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2014 a = UploadInstance(_REMOTE, 'Knee/T1/IM-0001-0001.dcm') |
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2015 b = UploadInstance(_REMOTE, 'Knee/T1/IM-0001-0002.dcm') |
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2016 c = UploadInstance(_REMOTE, 'Knee/T1/IM-0001-0003.dcm') |
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2017 |
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2018 j = DoPost(_REMOTE, '/modalities/orthanctest/store', { |
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2019 'LocalAet' : 'YOP', |
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2020 'Resources' : [ a['ID'], b['ID'] ] |
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2021 }) |
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2022 |
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2023 self.assertEqual(2, len(DoGet(_LOCAL, '/instances'))) |
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2024 self.assertEqual('YOP', DoGet(_LOCAL, '/instances/%s/metadata/RemoteAET' % a['ID'])) |
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2025 |
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2026 DropOrthanc(_LOCAL) |
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2027 self.assertEqual(0, len(DoGet(_LOCAL, '/instances'))) |
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2028 |
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2029 j = DoPost(_REMOTE, '/modalities/orthanctest/store', { |
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2030 'Resources' : [ c['ID'] ] |
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2031 }) |
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2032 |
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2033 self.assertEqual(1, len(DoGet(_LOCAL, '/instances'))) |
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2034 self.assertEqual('ORTHANC', DoGet(_LOCAL, '/instances/%s/metadata/RemoteAET' % c['ID'])) |
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2035 |
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2036 DropOrthanc(_REMOTE) |
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2037 DropOrthanc(_LOCAL) |
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2038 |
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2039 InstallLuaScript('Lua/AutoroutingChangeAet.lua') |
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2040 DoPost(_REMOTE, '/tools/execute-script', 'aet = "HELLO"', 'application/lua') |
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2041 |
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2042 self.assertEqual(0, len(DoGet(_LOCAL, '/instances'))) |
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2043 UploadInstance(_REMOTE, 'Knee/T1/IM-0001-0001.dcm') |
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2044 WaitEmpty(_REMOTE) |
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2045 self.assertEqual(1, len(DoGet(_LOCAL, '/instances'))) |
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2046 self.assertEqual('HELLO', DoGet(_LOCAL, '/instances/%s/metadata/RemoteAET' % a['ID'])) |
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2047 |
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2048 DoPost(_REMOTE, '/tools/execute-script', 'aet = nill', 'application/lua') |
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2049 UploadInstance(_REMOTE, 'Knee/T1/IM-0001-0002.dcm') |
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2050 WaitEmpty(_REMOTE) |
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2051 self.assertEqual(2, len(DoGet(_LOCAL, '/instances'))) |
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2052 self.assertEqual('ORTHANC', DoGet(_LOCAL, '/instances/%s/metadata/RemoteAET' % b['ID'])) |
|
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2053 |
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2054 def test_resources_since_limit(self): |
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2055 # Upload 16 instances |
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2056 for i in range(4): |
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2057 UploadInstance(_REMOTE, 'Brainix/Flair/IM-0001-000%d.dcm' % (i + 1)) |
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2058 UploadInstance(_REMOTE, 'Brainix/Epi/IM-0001-000%d.dcm' % (i + 1)) |
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2059 UploadInstance(_REMOTE, 'Knee/T1/IM-0001-000%d.dcm' % (i + 1)) |
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2060 UploadInstance(_REMOTE, 'Knee/T2/IM-0001-000%d.dcm' % (i + 1)) |
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2061 |
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2062 self.assertEqual(2, len(DoGet(_REMOTE, '/patients'))) |
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2063 self.assertEqual(2, len(DoGet(_REMOTE, '/studies'))) |
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2064 self.assertEqual(4, len(DoGet(_REMOTE, '/series'))) |
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2065 self.assertEqual(16, len(DoGet(_REMOTE, '/instances'))) |
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2066 |
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2067 self.assertRaises(Exception, lambda: DoGet(_REMOTE, '/patients&since=10' % i)) |
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2068 self.assertRaises(Exception, lambda: DoGet(_REMOTE, '/patients&limit=10' % i)) |
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2069 |
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2070 self.assertEqual(0, len(DoGet(_REMOTE, '/patients?since=0&limit=0'))) |
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2071 self.assertEqual(2, len(DoGet(_REMOTE, '/patients?since=0&limit=100'))) |
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2072 self.assertEqual(2, len(DoGet(_REMOTE, '/studies?since=0&limit=100'))) |
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2073 self.assertEqual(4, len(DoGet(_REMOTE, '/series?since=0&limit=100'))) |
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2074 self.assertEqual(16, len(DoGet(_REMOTE, '/instances?since=0&limit=100'))) |
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2075 self.assertEqual(1, len(DoGet(_REMOTE, '/patients?since=1&limit=100'))) |
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2076 self.assertEqual(0, len(DoGet(_REMOTE, '/patients?since=2&limit=100'))) |
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2077 self.assertEqual(0, len(DoGet(_REMOTE, '/patients?since=3&limit=100'))) |
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2078 self.assertEqual(1, len(DoGet(_REMOTE, '/studies?since=1&limit=100'))) |
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2079 self.assertEqual(3, len(DoGet(_REMOTE, '/series?since=1&limit=100'))) |
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2080 self.assertEqual(2, len(DoGet(_REMOTE, '/series?since=2&limit=100'))) |
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2081 self.assertEqual(1, len(DoGet(_REMOTE, '/series?since=3&limit=100'))) |
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2082 self.assertEqual(0, len(DoGet(_REMOTE, '/series?since=4&limit=100'))) |
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2083 self.assertEqual(0, len(DoGet(_REMOTE, '/series?since=100&limit=100'))) |
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2084 self.assertEqual(15, len(DoGet(_REMOTE, '/instances?since=1&limit=100'))) |
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2085 |
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2086 for limit in [ 1, 2, 3, 7, 16, 17 ]: |
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2087 s = {} |
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2088 since = 0 |
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2089 while True: |
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2090 t = DoGet(_REMOTE, '/instances?since=%d&limit=%d' % (since, limit)) |
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2091 if len(t) == 0: |
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2092 break |
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2093 |
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2094 since += len(t) |
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2095 for i in t: |
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2096 s[i] = None |
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2097 |
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2098 self.assertEqual(16, len(s)) |
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2099 for instance in DoGet(_REMOTE, '/instances'): |
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2100 self.assertTrue(instance in s) |