annotate Tests/Tests.py @ 23:30ecc857fa07

test latin-2
author Sebastien Jodogne <s.jodogne@gmail.com>
date Tue, 23 Jun 2015 13:49:53 +0200
parents 8f4b70c89467
children 040f6ef1394a
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1 #!/usr/bin/env python
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2 # -*- coding: utf-8 -*-
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3
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4
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5 # Orthanc - A Lightweight, RESTful DICOM Store
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6 # Copyright (C) 2012-2015 Sebastien Jodogne, Medical Physics
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7 # Department, University Hospital of Liege, Belgium
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8 #
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9 # This program is free software: you can redistribute it and/or
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10 # modify it under the terms of the GNU General Public License as
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11 # published by the Free Software Foundation, either version 3 of the
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12 # License, or (at your option) any later version.
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13 #
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14 # This program is distributed in the hope that it will be useful, but
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15 # WITHOUT ANY WARRANTY; without even the implied warranty of
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16 # MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU
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17 # General Public License for more details.
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18 #
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19 # You should have received a copy of the GNU General Public License
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20 # along with this program. If not, see <http://www.gnu.org/licenses/>.
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23 import tempfile
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24 import unittest
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26 from PIL import ImageChops
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27 from Toolbox import *
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28 from xml.dom import minidom
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29
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30 _LOCAL = None
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31 _REMOTE = None
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32
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34 def SetOrthancParameters(local, remote):
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35 global _LOCAL, _REMOTE
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36 _LOCAL = local
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37 _REMOTE = remote
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39
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40 def ExtractDicomTags(rawDicom, tags):
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41 with tempfile.NamedTemporaryFile(delete = True) as f:
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42 f.write(rawDicom)
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43 f.flush()
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44 data = subprocess.check_output([ 'dcm2xml', f.name ])
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45
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46 result = []
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47 for tag in tags:
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48 match = re.search('<element[^>]+name="%s">([^>]*)</element>' % tag, data)
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49 if match == None:
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50 result.append('')
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51 else:
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52 result.append(match.group(1))
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53
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54 return result
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56
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57 def InstallLuaScript(path):
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58 with open(GetDatabasePath(path), 'r') as f:
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59 DoPost(_REMOTE, '/tools/execute-script', f.read(), 'application/lua')
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62 def UninstallLuaCallbacks():
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63 DoPost(_REMOTE, '/tools/execute-script', 'function OnStoredInstance() end', 'application/lua')
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64
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65
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66 def CompareLists(a, b):
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67 if len(a) != len(b):
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68 return False
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69
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70 for i in range(len(a)):
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71 d = a[i] - b[i]
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72 if abs(d) >= 0.51: # Add some tolerance for rounding errors
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73 return False
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74
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75 return True
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81 class Orthanc(unittest.TestCase):
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82 def setUp(self):
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83 DropOrthanc(_LOCAL)
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84 DropOrthanc(_REMOTE)
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85 #print "In test", self._testMethodName
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86
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87 def AssertSameImages(self, truth, url):
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88 im = GetImage(_REMOTE, url)
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89 self.assertTrue(CompareLists(truth, im.getdata()))
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90
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91
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92 def test_system(self):
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93 self.assertTrue('Version' in DoGet(_REMOTE, '/system'))
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94 self.assertEqual('0', DoGet(_REMOTE, '/statistics')['TotalDiskSize'])
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95 self.assertEqual('0', DoGet(_REMOTE, '/statistics')['TotalUncompressedSize'])
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96
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97 def test_upload(self):
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98 u = UploadInstance(_REMOTE, 'DummyCT.dcm')
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99 self.assertEqual('Success', u['Status'])
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100 u = UploadInstance(_REMOTE, 'DummyCT.dcm')
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101 self.assertEqual('AlreadyStored', u['Status'])
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102 self.assertEqual(1, len(DoGet(_REMOTE, '/patients')))
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103 self.assertEqual(1, len(DoGet(_REMOTE, '/studies')))
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104 self.assertEqual(1, len(DoGet(_REMOTE, '/series')))
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105 self.assertEqual(1, len(DoGet(_REMOTE, '/instances')))
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106
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107 i = DoGet(_REMOTE, '/instances/%s/simplified-tags' % u['ID'])
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108 self.assertEqual('20070101', i['StudyDate'])
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109
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110
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111 def test_upload_2(self):
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112 i = UploadInstance(_REMOTE, 'DummyCT.dcm')['ID']
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113 instance = DoGet(_REMOTE, '/instances/%s' % i)
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114 self.assertEqual(i, instance['ID'])
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115 self.assertEqual('1.2.840.113619.2.176.2025.1499492.7040.1171286242.109',
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116 instance['MainDicomTags']['SOPInstanceUID'])
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117
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118 series = DoGet(_REMOTE, '/series/%s' % instance['ParentSeries'])
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119 self.assertEqual('1.2.840.113619.2.176.2025.1499492.7391.1171285944.394',
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120 series['MainDicomTags']['SeriesInstanceUID'])
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121
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122 study = DoGet(_REMOTE, '/studies/%s' % series['ParentStudy'])
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123 self.assertEqual('1.2.840.113619.2.176.2025.1499492.7391.1171285944.390',
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124 study['MainDicomTags']['StudyInstanceUID'])
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125
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126 patient = DoGet(_REMOTE, '/patients/%s' % study['ParentPatient'])
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127 self.assertEqual('ozp00SjY2xG',
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128 patient['MainDicomTags']['PatientID'])
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129
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130 dicom = DoGet(_REMOTE, '/instances/%s/file' % instance['ID'])
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131 self.assertEqual(2472, len(dicom))
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132 self.assertEqual('3e29b869978b6db4886355a2b1132124', ComputeMD5(dicom))
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133 self.assertEqual(1, len(DoGet(_REMOTE, '/instances/%s/frames' % i)))
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134 self.assertEqual('TWINOW', DoGet(_REMOTE, '/instances/%s/simplified-tags' % i)['StationName'])
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135 self.assertEqual('TWINOW', DoGet(_REMOTE, '/instances/%s/tags' % i)['0008,1010']['Value'])
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136
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137
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138 def test_images(self):
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139 i = UploadInstance(_REMOTE, 'Phenix/IM-0001-0001.dcm')['ID']
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140 self.assertEqual(1, len(DoGet(_REMOTE, '/instances/%s/frames' % i)))
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141
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142 im = GetImage(_REMOTE, '/instances/%s/preview' % i)
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143 self.assertEqual("L", im.mode)
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144 self.assertEqual(512, im.size[0])
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145 self.assertEqual(358, im.size[1])
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146
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147 im = GetImage(_REMOTE, '/instances/%s/image-uint8' % i)
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148 self.assertEqual("L", im.mode)
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Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3
diff changeset
149 self.assertEqual(512, im.size[0])
19eb87a45685 test_images
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3
diff changeset
150 self.assertEqual(358, im.size[1])
19eb87a45685 test_images
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3
diff changeset
151
19eb87a45685 test_images
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3
diff changeset
152 im = GetImage(_REMOTE, '/instances/%s/image-uint16' % i)
19eb87a45685 test_images
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3
diff changeset
153 self.assertEqual(512, im.size[0])
19eb87a45685 test_images
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3
diff changeset
154 self.assertEqual(358, im.size[1])
19eb87a45685 test_images
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3
diff changeset
155
19eb87a45685 test_images
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3
diff changeset
156 im = GetImage(_REMOTE, '/instances/%s/frames/0/preview' % i)
19eb87a45685 test_images
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3
diff changeset
157 self.assertEqual("L", im.mode)
19eb87a45685 test_images
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3
diff changeset
158 self.assertEqual(512, im.size[0])
19eb87a45685 test_images
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3
diff changeset
159 self.assertEqual(358, im.size[1])
19eb87a45685 test_images
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3
diff changeset
160
19eb87a45685 test_images
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3
diff changeset
161 im = GetImage(_REMOTE, '/instances/%s/frames/0/image-uint8' % i)
19eb87a45685 test_images
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3
diff changeset
162 self.assertEqual("L", im.mode)
19eb87a45685 test_images
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3
diff changeset
163 self.assertEqual(512, im.size[0])
19eb87a45685 test_images
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3
diff changeset
164 self.assertEqual(358, im.size[1])
19eb87a45685 test_images
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3
diff changeset
165
19eb87a45685 test_images
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3
diff changeset
166 im = GetImage(_REMOTE, '/instances/%s/frames/0/image-uint16' % i)
19eb87a45685 test_images
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3
diff changeset
167 self.assertEqual(512, im.size[0])
19eb87a45685 test_images
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3
diff changeset
168 self.assertEqual(358, im.size[1])
19eb87a45685 test_images
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3
diff changeset
169
6
6d645b3011e1 test_hierarchy
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 5
diff changeset
170
6d645b3011e1 test_hierarchy
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 5
diff changeset
171 def test_hierarchy(self):
6d645b3011e1 test_hierarchy
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 5
diff changeset
172 UploadFolder(_REMOTE, 'Brainix/Epi')
6d645b3011e1 test_hierarchy
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 5
diff changeset
173 UploadFolder(_REMOTE, 'Brainix/Flair')
6d645b3011e1 test_hierarchy
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 5
diff changeset
174 UploadFolder(_REMOTE, 'Knee/T1')
6d645b3011e1 test_hierarchy
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 5
diff changeset
175 UploadFolder(_REMOTE, 'Knee/T2')
6d645b3011e1 test_hierarchy
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 5
diff changeset
176
6d645b3011e1 test_hierarchy
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 5
diff changeset
177 p = DoGet(_REMOTE, '/patients')
6d645b3011e1 test_hierarchy
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 5
diff changeset
178 s = DoGet(_REMOTE, '/studies')
6d645b3011e1 test_hierarchy
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 5
diff changeset
179 t = DoGet(_REMOTE, '/series')
6d645b3011e1 test_hierarchy
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 5
diff changeset
180 self.assertEqual(2, len(p))
6d645b3011e1 test_hierarchy
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 5
diff changeset
181 self.assertEqual(2, len(s))
6d645b3011e1 test_hierarchy
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 5
diff changeset
182 self.assertEqual(4, len(t))
6d645b3011e1 test_hierarchy
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 5
diff changeset
183 self.assertEqual(94, len(DoGet(_REMOTE, '/instances')))
6d645b3011e1 test_hierarchy
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 5
diff changeset
184
6d645b3011e1 test_hierarchy
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 5
diff changeset
185 brainixPatient = '16738bc3-e47ed42a-43ce044c-a3414a45-cb069bd0'
6d645b3011e1 test_hierarchy
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 5
diff changeset
186 brainixStudy = '27f7126f-4f66fb14-03f4081b-f9341db2-53925988'
6d645b3011e1 test_hierarchy
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 5
diff changeset
187 brainixEpi = '2ac1316d-3e432022-62eabff2-c59f5475-9b1ac3f8'
6d645b3011e1 test_hierarchy
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 5
diff changeset
188 brainixFlair = '1e2c125c-411b8e86-3f4fe68e-a7584dd3-c6da78f0'
6d645b3011e1 test_hierarchy
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 5
diff changeset
189
6d645b3011e1 test_hierarchy
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 5
diff changeset
190 kneePatient = 'ca29faea-b6a0e17f-067743a1-8b778011-a48b2a17'
6d645b3011e1 test_hierarchy
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 5
diff changeset
191 kneeStudy = '0a9b3153-2512774b-2d9580de-1fc3dcf6-3bd83918'
6d645b3011e1 test_hierarchy
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 5
diff changeset
192 kneeT1 = '6de73705-c4e65c1b-9d9ea1b5-cabcd8e7-f15e4285'
6d645b3011e1 test_hierarchy
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 5
diff changeset
193 kneeT2 = 'bbf7a453-0d34251a-03663b55-46bb31b9-ffd74c59'
6d645b3011e1 test_hierarchy
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 5
diff changeset
194
6d645b3011e1 test_hierarchy
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 5
diff changeset
195 self.assertTrue(brainixPatient in p)
6d645b3011e1 test_hierarchy
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 5
diff changeset
196 self.assertTrue(kneePatient in p)
6d645b3011e1 test_hierarchy
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 5
diff changeset
197 self.assertTrue(brainixStudy in s)
6d645b3011e1 test_hierarchy
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 5
diff changeset
198 self.assertTrue(kneeStudy in s)
6d645b3011e1 test_hierarchy
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 5
diff changeset
199 self.assertTrue(brainixEpi in t)
6d645b3011e1 test_hierarchy
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 5
diff changeset
200 self.assertTrue(brainixFlair in t)
6d645b3011e1 test_hierarchy
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 5
diff changeset
201 self.assertTrue(kneeT1 in t)
6d645b3011e1 test_hierarchy
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 5
diff changeset
202 self.assertTrue(kneeT2 in t)
6d645b3011e1 test_hierarchy
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 5
diff changeset
203
6d645b3011e1 test_hierarchy
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 5
diff changeset
204 self.assertEqual(44, len(DoGet(_REMOTE, '/patients/%s/instances' % brainixPatient)))
6d645b3011e1 test_hierarchy
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 5
diff changeset
205 self.assertEqual(2, len(DoGet(_REMOTE, '/patients/%s/series' % brainixPatient)))
6d645b3011e1 test_hierarchy
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 5
diff changeset
206 self.assertEqual(1, len(DoGet(_REMOTE, '/patients/%s/studies' % brainixPatient)))
6d645b3011e1 test_hierarchy
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 5
diff changeset
207
6d645b3011e1 test_hierarchy
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 5
diff changeset
208 self.assertEqual(50, len(DoGet(_REMOTE, '/patients/%s/instances' % kneePatient)))
6d645b3011e1 test_hierarchy
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 5
diff changeset
209 self.assertEqual(2, len(DoGet(_REMOTE, '/patients/%s/series' % kneePatient)))
6d645b3011e1 test_hierarchy
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 5
diff changeset
210 self.assertEqual(1, len(DoGet(_REMOTE, '/patients/%s/studies' % kneePatient)))
6d645b3011e1 test_hierarchy
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 5
diff changeset
211
6d645b3011e1 test_hierarchy
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 5
diff changeset
212 self.assertEqual(2, len(DoGet(_REMOTE, '/studies/%s/series' % brainixStudy)))
6d645b3011e1 test_hierarchy
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 5
diff changeset
213 self.assertEqual(44, len(DoGet(_REMOTE, '/studies/%s/instances' % brainixStudy)))
6d645b3011e1 test_hierarchy
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 5
diff changeset
214
6d645b3011e1 test_hierarchy
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 5
diff changeset
215 self.assertEqual(2, len(DoGet(_REMOTE, '/studies/%s/series' % kneeStudy)))
6d645b3011e1 test_hierarchy
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 5
diff changeset
216 self.assertEqual(50, len(DoGet(_REMOTE, '/studies/%s/instances' % kneeStudy)))
6d645b3011e1 test_hierarchy
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 5
diff changeset
217
6d645b3011e1 test_hierarchy
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 5
diff changeset
218 self.assertEqual(22, len(DoGet(_REMOTE, '/series/%s/instances' % brainixEpi)))
6d645b3011e1 test_hierarchy
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 5
diff changeset
219 self.assertEqual(22, len(DoGet(_REMOTE, '/series/%s/instances' % brainixFlair)))
6d645b3011e1 test_hierarchy
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 5
diff changeset
220 self.assertEqual(24, len(DoGet(_REMOTE, '/series/%s/instances' % kneeT1)))
6d645b3011e1 test_hierarchy
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 5
diff changeset
221 self.assertEqual(26, len(DoGet(_REMOTE, '/series/%s/instances' % kneeT2)))
6d645b3011e1 test_hierarchy
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 5
diff changeset
222
6d645b3011e1 test_hierarchy
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 5
diff changeset
223 for patient in p:
6d645b3011e1 test_hierarchy
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 5
diff changeset
224 for study in DoGet(_REMOTE, '/patients/%s/studies' % patient):
6d645b3011e1 test_hierarchy
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 5
diff changeset
225 self.assertEqual(patient, study['ParentPatient'])
6d645b3011e1 test_hierarchy
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 5
diff changeset
226 for series in DoGet(_REMOTE, '/studies/%s/series' % study['ID']):
6d645b3011e1 test_hierarchy
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 5
diff changeset
227 self.assertEqual(study['ID'], series['ParentStudy'])
6d645b3011e1 test_hierarchy
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 5
diff changeset
228 for instance in DoGet(_REMOTE, '/series/%s/instances' % series['ID']):
6d645b3011e1 test_hierarchy
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 5
diff changeset
229 self.assertEqual(series['ID'], instance['ParentSeries'])
6d645b3011e1 test_hierarchy
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 5
diff changeset
230
6d645b3011e1 test_hierarchy
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 5
diff changeset
231 self.assertEqual(json.dumps(DoGet(_REMOTE, '/instances/%s/attachments/dicom-as-json/data' % instance['ID'])),
6d645b3011e1 test_hierarchy
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 5
diff changeset
232 json.dumps(DoGet(_REMOTE, '/instances/%s/tags' % instance['ID'])))
6d645b3011e1 test_hierarchy
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 5
diff changeset
233
6d645b3011e1 test_hierarchy
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 5
diff changeset
234
6d645b3011e1 test_hierarchy
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 5
diff changeset
235 r = DoDelete(_REMOTE, "/studies/%s" % brainixStudy)['RemainingAncestor']
6d645b3011e1 test_hierarchy
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 5
diff changeset
236 self.assertEqual(1, len(DoGet(_REMOTE, '/patients')))
6d645b3011e1 test_hierarchy
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 5
diff changeset
237 self.assertEqual(1, len(DoGet(_REMOTE, '/studies')))
6d645b3011e1 test_hierarchy
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 5
diff changeset
238 self.assertEqual(2, len(DoGet(_REMOTE, '/series')))
6d645b3011e1 test_hierarchy
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 5
diff changeset
239 self.assertEqual(50, len(DoGet(_REMOTE, '/instances')))
6d645b3011e1 test_hierarchy
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 5
diff changeset
240 self.assertEqual(None, r)
6d645b3011e1 test_hierarchy
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 5
diff changeset
241
6d645b3011e1 test_hierarchy
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 5
diff changeset
242 r = DoDelete(_REMOTE, "/series/%s" % kneeT2)['RemainingAncestor']
6d645b3011e1 test_hierarchy
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 5
diff changeset
243 self.assertEqual(1, len(DoGet(_REMOTE, '/patients')))
6d645b3011e1 test_hierarchy
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 5
diff changeset
244 self.assertEqual(1, len(DoGet(_REMOTE, '/studies')))
6d645b3011e1 test_hierarchy
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 5
diff changeset
245 self.assertEqual(1, len(DoGet(_REMOTE, '/series')))
6d645b3011e1 test_hierarchy
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 5
diff changeset
246 self.assertEqual(24, len(DoGet(_REMOTE, '/instances')))
6d645b3011e1 test_hierarchy
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 5
diff changeset
247 self.assertEqual('Study', r['Type'])
6d645b3011e1 test_hierarchy
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 5
diff changeset
248 self.assertEqual(kneeStudy, r['ID'])
6d645b3011e1 test_hierarchy
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 5
diff changeset
249
6d645b3011e1 test_hierarchy
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 5
diff changeset
250 r = DoDelete(_REMOTE, "/instances/%s" % DoGet(_REMOTE, '/instances')[0])['RemainingAncestor']
6d645b3011e1 test_hierarchy
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 5
diff changeset
251 self.assertEqual(1, len(DoGet(_REMOTE, '/patients')))
6d645b3011e1 test_hierarchy
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 5
diff changeset
252 self.assertEqual(1, len(DoGet(_REMOTE, '/studies')))
6d645b3011e1 test_hierarchy
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 5
diff changeset
253 self.assertEqual(1, len(DoGet(_REMOTE, '/series')))
6d645b3011e1 test_hierarchy
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 5
diff changeset
254 self.assertEqual(23, len(DoGet(_REMOTE, '/instances')))
6d645b3011e1 test_hierarchy
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 5
diff changeset
255 self.assertEqual('Series', r['Type'])
6d645b3011e1 test_hierarchy
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 5
diff changeset
256 self.assertEqual(kneeT1, r['ID'])
6d645b3011e1 test_hierarchy
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 5
diff changeset
257
6d645b3011e1 test_hierarchy
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 5
diff changeset
258 r = DoDelete(_REMOTE, "/patients/%s" % kneePatient)['RemainingAncestor']
6d645b3011e1 test_hierarchy
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 5
diff changeset
259 self.assertEqual(0, len(DoGet(_REMOTE, '/patients')))
6d645b3011e1 test_hierarchy
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 5
diff changeset
260 self.assertEqual(0, len(DoGet(_REMOTE, '/studies')))
6d645b3011e1 test_hierarchy
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 5
diff changeset
261 self.assertEqual(0, len(DoGet(_REMOTE, '/series')))
6d645b3011e1 test_hierarchy
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 5
diff changeset
262 self.assertEqual(0, len(DoGet(_REMOTE, '/instances')))
6d645b3011e1 test_hierarchy
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 5
diff changeset
263 self.assertEqual(None, r)
6d645b3011e1 test_hierarchy
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 5
diff changeset
264
6d645b3011e1 test_hierarchy
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 5
diff changeset
265 DropOrthanc(_REMOTE)
6d645b3011e1 test_hierarchy
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 5
diff changeset
266 self.assertEqual('0', DoGet(_REMOTE, '/statistics')['TotalDiskSize'])
6d645b3011e1 test_hierarchy
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 5
diff changeset
267 self.assertEqual('0', DoGet(_REMOTE, '/statistics')['TotalUncompressedSize'])
7
302f06f3bba2 test_multi_frame
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 6
diff changeset
268
302f06f3bba2 test_multi_frame
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 6
diff changeset
269
21
2a29bcff60a7 tests of image decoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 18
diff changeset
270 def test_multiframe(self):
7
302f06f3bba2 test_multi_frame
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 6
diff changeset
271 i = UploadInstance(_REMOTE, 'Multiframe.dcm')['ID']
302f06f3bba2 test_multi_frame
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 6
diff changeset
272 self.assertEqual(76, len(DoGet(_REMOTE, '/instances/%s/frames' % i)))
302f06f3bba2 test_multi_frame
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 6
diff changeset
273
302f06f3bba2 test_multi_frame
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 6
diff changeset
274 im = GetImage(_REMOTE, '/instances/%s/frames/0/preview' % i)
302f06f3bba2 test_multi_frame
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 6
diff changeset
275 self.assertEqual("L", im.mode)
302f06f3bba2 test_multi_frame
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 6
diff changeset
276 self.assertEqual(512, im.size[0])
302f06f3bba2 test_multi_frame
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 6
diff changeset
277 self.assertEqual(512, im.size[1])
302f06f3bba2 test_multi_frame
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 6
diff changeset
278
302f06f3bba2 test_multi_frame
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 6
diff changeset
279 DoGet(_REMOTE, '/instances/%s/frames/0/image-uint8' % i)
302f06f3bba2 test_multi_frame
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 6
diff changeset
280 DoGet(_REMOTE, '/instances/%s/frames/0/image-uint16' % i)
302f06f3bba2 test_multi_frame
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 6
diff changeset
281 DoGet(_REMOTE, '/instances/%s/frames/75/preview' % i)
302f06f3bba2 test_multi_frame
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parents: 6
diff changeset
282 self.assertRaises(Exception, lambda: DoGet(_REMOTE, '/instances/%s/frames/aaa/preview' % i))
302f06f3bba2 test_multi_frame
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 6
diff changeset
283 self.assertRaises(Exception, lambda: DoGet(_REMOTE, '/instances/%s/frames/76/preview' % i))
302f06f3bba2 test_multi_frame
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 6
diff changeset
284
8
f8d781d1d267 test_changes, test_archive, test_media_archive
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 7
diff changeset
285
f8d781d1d267 test_changes, test_archive, test_media_archive
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 7
diff changeset
286 def test_changes(self):
f8d781d1d267 test_changes, test_archive, test_media_archive
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 7
diff changeset
287 # Check emptiness
f8d781d1d267 test_changes, test_archive, test_media_archive
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 7
diff changeset
288 c = DoGet(_REMOTE, '/changes')
f8d781d1d267 test_changes, test_archive, test_media_archive
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 7
diff changeset
289 self.assertEqual(0, len(c['Changes']))
f8d781d1d267 test_changes, test_archive, test_media_archive
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 7
diff changeset
290 self.assertEqual(0, c['Last'])
f8d781d1d267 test_changes, test_archive, test_media_archive
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 7
diff changeset
291 self.assertTrue(c['Done'])
f8d781d1d267 test_changes, test_archive, test_media_archive
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 7
diff changeset
292 c = DoGet(_REMOTE, '/changes?last')
f8d781d1d267 test_changes, test_archive, test_media_archive
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 7
diff changeset
293 self.assertEqual(0, len(c['Changes']))
f8d781d1d267 test_changes, test_archive, test_media_archive
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 7
diff changeset
294 self.assertEqual(0, c['Last'])
f8d781d1d267 test_changes, test_archive, test_media_archive
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 7
diff changeset
295 self.assertTrue(c['Done'])
f8d781d1d267 test_changes, test_archive, test_media_archive
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 7
diff changeset
296
f8d781d1d267 test_changes, test_archive, test_media_archive
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 7
diff changeset
297 # Add 1 instance
f8d781d1d267 test_changes, test_archive, test_media_archive
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 7
diff changeset
298 i = UploadInstance(_REMOTE, 'Brainix/Flair/IM-0001-0001.dcm')['ID']
f8d781d1d267 test_changes, test_archive, test_media_archive
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 7
diff changeset
299 c = DoGet(_REMOTE, '/changes')
f8d781d1d267 test_changes, test_archive, test_media_archive
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 7
diff changeset
300 begin = c['Last']
f8d781d1d267 test_changes, test_archive, test_media_archive
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 7
diff changeset
301 self.assertEqual(4, len(c['Changes']))
f8d781d1d267 test_changes, test_archive, test_media_archive
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 7
diff changeset
302 self.assertTrue(c['Done'])
f8d781d1d267 test_changes, test_archive, test_media_archive
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 7
diff changeset
303 self.assertEqual(c['Changes'][-1]['Seq'], c['Last'])
f8d781d1d267 test_changes, test_archive, test_media_archive
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 7
diff changeset
304
f8d781d1d267 test_changes, test_archive, test_media_archive
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 7
diff changeset
305 c = DoGet(_REMOTE, '/changes?last')
f8d781d1d267 test_changes, test_archive, test_media_archive
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 7
diff changeset
306 self.assertEqual(1, len(c['Changes']))
f8d781d1d267 test_changes, test_archive, test_media_archive
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 7
diff changeset
307 self.assertEqual(begin, c['Last'])
f8d781d1d267 test_changes, test_archive, test_media_archive
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 7
diff changeset
308 self.assertTrue(c['Done'])
f8d781d1d267 test_changes, test_archive, test_media_archive
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 7
diff changeset
309 c = DoGet(_REMOTE, '/changes?limit=1&since=' + str(begin - 1))
f8d781d1d267 test_changes, test_archive, test_media_archive
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 7
diff changeset
310 self.assertEqual(1, len(c['Changes']))
f8d781d1d267 test_changes, test_archive, test_media_archive
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 7
diff changeset
311 self.assertEqual(begin, c['Last'])
f8d781d1d267 test_changes, test_archive, test_media_archive
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 7
diff changeset
312 self.assertTrue(c['Done'])
f8d781d1d267 test_changes, test_archive, test_media_archive
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 7
diff changeset
313 c = DoGet(_REMOTE, '/changes?limit=1&since=' + str(begin - 2))
f8d781d1d267 test_changes, test_archive, test_media_archive
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 7
diff changeset
314 self.assertEqual(1, len(c['Changes']))
f8d781d1d267 test_changes, test_archive, test_media_archive
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 7
diff changeset
315 self.assertEqual(begin - 1, c['Last'])
f8d781d1d267 test_changes, test_archive, test_media_archive
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 7
diff changeset
316 self.assertFalse(c['Done'])
f8d781d1d267 test_changes, test_archive, test_media_archive
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 7
diff changeset
317 c = DoGet(_REMOTE, '/changes?limit=1&since=' + str(begin - 3))
f8d781d1d267 test_changes, test_archive, test_media_archive
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 7
diff changeset
318 self.assertEqual(1, len(c['Changes']))
f8d781d1d267 test_changes, test_archive, test_media_archive
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 7
diff changeset
319 self.assertEqual(begin - 2, c['Last'])
f8d781d1d267 test_changes, test_archive, test_media_archive
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 7
diff changeset
320 self.assertFalse(c['Done'])
f8d781d1d267 test_changes, test_archive, test_media_archive
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 7
diff changeset
321
f8d781d1d267 test_changes, test_archive, test_media_archive
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 7
diff changeset
322 UploadFolder(_REMOTE, 'Knee/T1')
f8d781d1d267 test_changes, test_archive, test_media_archive
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 7
diff changeset
323 UploadFolder(_REMOTE, 'Knee/T2')
f8d781d1d267 test_changes, test_archive, test_media_archive
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 7
diff changeset
324 since = begin
f8d781d1d267 test_changes, test_archive, test_media_archive
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 7
diff changeset
325 countPatients = 0
f8d781d1d267 test_changes, test_archive, test_media_archive
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 7
diff changeset
326 countStudies = 0
f8d781d1d267 test_changes, test_archive, test_media_archive
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 7
diff changeset
327 countSeries = 0
f8d781d1d267 test_changes, test_archive, test_media_archive
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 7
diff changeset
328 countInstances = 0
f8d781d1d267 test_changes, test_archive, test_media_archive
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 7
diff changeset
329 completed = 0
f8d781d1d267 test_changes, test_archive, test_media_archive
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 7
diff changeset
330 while True:
f8d781d1d267 test_changes, test_archive, test_media_archive
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 7
diff changeset
331 c = DoGet(_REMOTE, '/changes', { 'since' : since, 'limit' : 3 })
f8d781d1d267 test_changes, test_archive, test_media_archive
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 7
diff changeset
332 since = c['Last']
f8d781d1d267 test_changes, test_archive, test_media_archive
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 7
diff changeset
333 for i in c['Changes']:
f8d781d1d267 test_changes, test_archive, test_media_archive
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 7
diff changeset
334 if i['ResourceType'] == 'Instance':
f8d781d1d267 test_changes, test_archive, test_media_archive
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 7
diff changeset
335 countInstances += 1
f8d781d1d267 test_changes, test_archive, test_media_archive
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 7
diff changeset
336 if i['ResourceType'] == 'Patient':
f8d781d1d267 test_changes, test_archive, test_media_archive
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 7
diff changeset
337 countPatients += 1
f8d781d1d267 test_changes, test_archive, test_media_archive
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 7
diff changeset
338 if i['ResourceType'] == 'Study':
f8d781d1d267 test_changes, test_archive, test_media_archive
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 7
diff changeset
339 countStudies += 1
f8d781d1d267 test_changes, test_archive, test_media_archive
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 7
diff changeset
340 if i['ResourceType'] == 'Series':
f8d781d1d267 test_changes, test_archive, test_media_archive
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 7
diff changeset
341 countSeries += 1
f8d781d1d267 test_changes, test_archive, test_media_archive
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 7
diff changeset
342 if i['ChangeType'] == 'NewInstance':
f8d781d1d267 test_changes, test_archive, test_media_archive
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 7
diff changeset
343 countInstances += 1
f8d781d1d267 test_changes, test_archive, test_media_archive
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 7
diff changeset
344 if i['ChangeType'] == 'NewPatient':
f8d781d1d267 test_changes, test_archive, test_media_archive
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 7
diff changeset
345 countPatients += 1
f8d781d1d267 test_changes, test_archive, test_media_archive
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 7
diff changeset
346 if i['ChangeType'] == 'NewStudy':
f8d781d1d267 test_changes, test_archive, test_media_archive
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 7
diff changeset
347 countStudies += 1
f8d781d1d267 test_changes, test_archive, test_media_archive
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 7
diff changeset
348 if i['ChangeType'] == 'NewSeries':
f8d781d1d267 test_changes, test_archive, test_media_archive
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 7
diff changeset
349 countSeries += 1
f8d781d1d267 test_changes, test_archive, test_media_archive
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 7
diff changeset
350 if i['ChangeType'] == 'CompletedSeries':
f8d781d1d267 test_changes, test_archive, test_media_archive
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 7
diff changeset
351 completed += 1
f8d781d1d267 test_changes, test_archive, test_media_archive
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 7
diff changeset
352 self.assertTrue('ID' in i)
f8d781d1d267 test_changes, test_archive, test_media_archive
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 7
diff changeset
353 self.assertTrue('Path' in i)
f8d781d1d267 test_changes, test_archive, test_media_archive
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 7
diff changeset
354 self.assertTrue('Seq' in i)
f8d781d1d267 test_changes, test_archive, test_media_archive
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 7
diff changeset
355 if c['Done']:
f8d781d1d267 test_changes, test_archive, test_media_archive
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 7
diff changeset
356 break
f8d781d1d267 test_changes, test_archive, test_media_archive
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 7
diff changeset
357
f8d781d1d267 test_changes, test_archive, test_media_archive
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 7
diff changeset
358 self.assertEqual(2 * 50, countInstances)
f8d781d1d267 test_changes, test_archive, test_media_archive
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 7
diff changeset
359 self.assertEqual(2 * 1, countPatients)
f8d781d1d267 test_changes, test_archive, test_media_archive
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 7
diff changeset
360 self.assertEqual(2 * 1, countStudies)
f8d781d1d267 test_changes, test_archive, test_media_archive
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 7
diff changeset
361 self.assertEqual(2 * 2, countSeries)
f8d781d1d267 test_changes, test_archive, test_media_archive
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 7
diff changeset
362 self.assertEqual(0, completed)
f8d781d1d267 test_changes, test_archive, test_media_archive
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 7
diff changeset
363
f8d781d1d267 test_changes, test_archive, test_media_archive
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 7
diff changeset
364
f8d781d1d267 test_changes, test_archive, test_media_archive
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 7
diff changeset
365 def test_archive(self):
f8d781d1d267 test_changes, test_archive, test_media_archive
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 7
diff changeset
366 UploadInstance(_REMOTE, 'Knee/T1/IM-0001-0001.dcm')
f8d781d1d267 test_changes, test_archive, test_media_archive
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 7
diff changeset
367 UploadInstance(_REMOTE, 'Knee/T2/IM-0001-0001.dcm')
f8d781d1d267 test_changes, test_archive, test_media_archive
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 7
diff changeset
368
f8d781d1d267 test_changes, test_archive, test_media_archive
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 7
diff changeset
369 z = GetArchive(_REMOTE, '/patients/%s/archive' % DoGet(_REMOTE, '/patients')[0])
f8d781d1d267 test_changes, test_archive, test_media_archive
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 7
diff changeset
370 self.assertEqual(2, len(z.namelist()))
f8d781d1d267 test_changes, test_archive, test_media_archive
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 7
diff changeset
371
f8d781d1d267 test_changes, test_archive, test_media_archive
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 7
diff changeset
372 z = GetArchive(_REMOTE, '/studies/%s/archive' % DoGet(_REMOTE, '/studies')[0])
f8d781d1d267 test_changes, test_archive, test_media_archive
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 7
diff changeset
373 self.assertEqual(2, len(z.namelist()))
f8d781d1d267 test_changes, test_archive, test_media_archive
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 7
diff changeset
374
f8d781d1d267 test_changes, test_archive, test_media_archive
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 7
diff changeset
375 z = GetArchive(_REMOTE, '/series/%s/archive' % DoGet(_REMOTE, '/series')[0])
f8d781d1d267 test_changes, test_archive, test_media_archive
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 7
diff changeset
376 self.assertEqual(1, len(z.namelist()))
f8d781d1d267 test_changes, test_archive, test_media_archive
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 7
diff changeset
377
f8d781d1d267 test_changes, test_archive, test_media_archive
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 7
diff changeset
378 UploadInstance(_REMOTE, 'Brainix/Flair/IM-0001-0001.dcm')
f8d781d1d267 test_changes, test_archive, test_media_archive
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 7
diff changeset
379
f8d781d1d267 test_changes, test_archive, test_media_archive
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 7
diff changeset
380 z = GetArchive(_REMOTE, '/patients/%s/archive' % DoGet(_REMOTE, '/patients')[0])
f8d781d1d267 test_changes, test_archive, test_media_archive
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 7
diff changeset
381 self.assertEqual(2, len(z.namelist()))
f8d781d1d267 test_changes, test_archive, test_media_archive
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 7
diff changeset
382
f8d781d1d267 test_changes, test_archive, test_media_archive
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 7
diff changeset
383
f8d781d1d267 test_changes, test_archive, test_media_archive
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 7
diff changeset
384 def test_media_archive(self):
f8d781d1d267 test_changes, test_archive, test_media_archive
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 7
diff changeset
385 UploadInstance(_REMOTE, 'Knee/T1/IM-0001-0001.dcm')
f8d781d1d267 test_changes, test_archive, test_media_archive
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 7
diff changeset
386 UploadInstance(_REMOTE, 'Knee/T2/IM-0001-0001.dcm')
f8d781d1d267 test_changes, test_archive, test_media_archive
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 7
diff changeset
387
f8d781d1d267 test_changes, test_archive, test_media_archive
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 7
diff changeset
388 z = GetArchive(_REMOTE, '/patients/%s/media' % DoGet(_REMOTE, '/patients')[0])
f8d781d1d267 test_changes, test_archive, test_media_archive
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 7
diff changeset
389 self.assertEqual(3, len(z.namelist()))
f8d781d1d267 test_changes, test_archive, test_media_archive
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 7
diff changeset
390 self.assertTrue('IMAGES/IM0' in z.namelist())
f8d781d1d267 test_changes, test_archive, test_media_archive
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 7
diff changeset
391 self.assertTrue('IMAGES/IM1' in z.namelist())
f8d781d1d267 test_changes, test_archive, test_media_archive
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 7
diff changeset
392 self.assertTrue('DICOMDIR' in z.namelist())
f8d781d1d267 test_changes, test_archive, test_media_archive
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 7
diff changeset
393
f8d781d1d267 test_changes, test_archive, test_media_archive
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 7
diff changeset
394 try:
f8d781d1d267 test_changes, test_archive, test_media_archive
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 7
diff changeset
395 os.remove('/tmp/DICOMDIR')
f8d781d1d267 test_changes, test_archive, test_media_archive
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 7
diff changeset
396 except:
f8d781d1d267 test_changes, test_archive, test_media_archive
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 7
diff changeset
397 # The file does not exist
f8d781d1d267 test_changes, test_archive, test_media_archive
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 7
diff changeset
398 pass
f8d781d1d267 test_changes, test_archive, test_media_archive
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 7
diff changeset
399
f8d781d1d267 test_changes, test_archive, test_media_archive
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 7
diff changeset
400 z.extract('DICOMDIR', '/tmp')
f8d781d1d267 test_changes, test_archive, test_media_archive
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 7
diff changeset
401 a = subprocess.check_output([ 'dciodvfy', '/tmp/DICOMDIR' ],
f8d781d1d267 test_changes, test_archive, test_media_archive
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 7
diff changeset
402 stderr = subprocess.STDOUT).split('\n')
f8d781d1d267 test_changes, test_archive, test_media_archive
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 7
diff changeset
403 self.assertEqual(3, len(a))
f8d781d1d267 test_changes, test_archive, test_media_archive
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 7
diff changeset
404 self.assertTrue(a[0].startswith('Warning'))
f8d781d1d267 test_changes, test_archive, test_media_archive
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 7
diff changeset
405 self.assertEqual('BasicDirectory', a[1])
f8d781d1d267 test_changes, test_archive, test_media_archive
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 7
diff changeset
406 self.assertEqual('', a[2])
f8d781d1d267 test_changes, test_archive, test_media_archive
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 7
diff changeset
407
f8d781d1d267 test_changes, test_archive, test_media_archive
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 7
diff changeset
408 a = subprocess.check_output([ 'dcentvfy', '/tmp/DICOMDIR' ],
f8d781d1d267 test_changes, test_archive, test_media_archive
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 7
diff changeset
409 stderr = subprocess.STDOUT).split('\n')
f8d781d1d267 test_changes, test_archive, test_media_archive
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 7
diff changeset
410 self.assertEqual(1, len(a))
f8d781d1d267 test_changes, test_archive, test_media_archive
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 7
diff changeset
411 self.assertEqual('', a[0])
f8d781d1d267 test_changes, test_archive, test_media_archive
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 7
diff changeset
412
f8d781d1d267 test_changes, test_archive, test_media_archive
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 7
diff changeset
413 a = subprocess.check_output([ 'dcm2xml', '/tmp/DICOMDIR' ])
f8d781d1d267 test_changes, test_archive, test_media_archive
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 7
diff changeset
414 self.assertTrue(re.search('1.3.46.670589.11.17521.5.0.3124.2008081908590448738', a) != None)
f8d781d1d267 test_changes, test_archive, test_media_archive
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 7
diff changeset
415 self.assertTrue(re.search('1.3.46.670589.11.17521.5.0.3124.2008081909113806560', a) != None)
f8d781d1d267 test_changes, test_archive, test_media_archive
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 7
diff changeset
416
f8d781d1d267 test_changes, test_archive, test_media_archive
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 7
diff changeset
417 os.remove('/tmp/DICOMDIR')
10
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 8
diff changeset
418
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 8
diff changeset
419
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 8
diff changeset
420 def test_protection(self):
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 8
diff changeset
421 UploadInstance(_REMOTE, 'Knee/T1/IM-0001-0001.dcm')
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 8
diff changeset
422 UploadInstance(_REMOTE, 'Brainix/Flair/IM-0001-0001.dcm')
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 8
diff changeset
423 self.assertEqual(2, len(DoGet(_REMOTE, '/patients')))
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 8
diff changeset
424 a = DoGet(_REMOTE, '/patients')[0]
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 8
diff changeset
425 b = DoGet(_REMOTE, '/patients')[1]
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 8
diff changeset
426 self.assertEqual(0, DoGet(_REMOTE, '/patients/%s/protected' % a))
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 8
diff changeset
427 DoPut(_REMOTE, '/patients/%s/protected' % a, '0', 'text/plain')
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 8
diff changeset
428 self.assertEqual(0, DoGet(_REMOTE, '/patients/%s/protected' % a))
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 8
diff changeset
429 DoPut(_REMOTE, '/patients/%s/protected' % a, '1', 'text/plain')
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 8
diff changeset
430 self.assertEqual(1, DoGet(_REMOTE, '/patients/%s/protected' % a))
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 8
diff changeset
431 DoPut(_REMOTE, '/patients/%s/protected' % a, '0', 'text/plain')
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 8
diff changeset
432 self.assertEqual(0, DoGet(_REMOTE, '/patients/%s/protected' % a))
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 8
diff changeset
433
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 8
diff changeset
434
12
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 11
diff changeset
435 def test_raw_tags(self):
10
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 8
diff changeset
436 i = UploadInstance(_REMOTE, 'PrivateTags.dcm')['ID']
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 8
diff changeset
437
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 8
diff changeset
438 dicom = DoGet(_REMOTE, '/instances/%s/file' % i)
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 8
diff changeset
439 self.assertEqual('1a7c56cb02d6e742cc9c856a8ac182e3', ComputeMD5(dicom))
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 8
diff changeset
440
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 8
diff changeset
441 s = '/instances/%s/content/' % i
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 8
diff changeset
442
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 8
diff changeset
443 self.assertEqual('LOGIQBOOK', DoGet(_REMOTE, s + '0008-1010').strip())
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 8
diff changeset
444 self.assertRaises(Exception, lambda: DoGet(_REMOTE, s + '0008-1011'))
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 8
diff changeset
445
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 8
diff changeset
446 self.assertEqual('Abdomen', DoGet(_REMOTE, s + '7fe1-1001/0/7fe1-1008/0/7fe1-1057').strip())
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 8
diff changeset
447 self.assertEqual('cla_3c', DoGet(_REMOTE, s + '7fe1-1001/0/7fe1-1008/8/7fe1-1057').strip())
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 8
diff changeset
448
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 8
diff changeset
449 UploadInstance(_REMOTE, 'Brainix/Epi/IM-0001-0001.dcm')
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 8
diff changeset
450 UploadInstance(_REMOTE, 'Brainix/Flair/IM-0001-0001.dcm')
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 8
diff changeset
451 UploadInstance(_REMOTE, 'Knee/T1/IM-0001-0001.dcm')
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 8
diff changeset
452 UploadInstance(_REMOTE, 'Knee/T2/IM-0001-0001.dcm')
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 8
diff changeset
453
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 8
diff changeset
454 for i in DoGet(_REMOTE, '/instances'):
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 8
diff changeset
455 aid = DoGet(_REMOTE, '/instances/%s' % i)['MainDicomTags']['SOPInstanceUID']
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 8
diff changeset
456 self.assertEqual(aid, DoGet(_REMOTE, '/instances/%s/content/0008-0018' % i).replace(chr(0), ''))
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 8
diff changeset
457
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 8
diff changeset
458
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 8
diff changeset
459 def test_raw_tags_mdn(self):
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 8
diff changeset
460 # Bug reported by Cyril Paulus
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 8
diff changeset
461 i = UploadInstance(_REMOTE, 'PrivateMDNTags.dcm')['ID']
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 8
diff changeset
462 self.assertAlmostEqual(0.000027, DoGet(_REMOTE, '/instances/%s/content/7053-1000' % i))
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 8
diff changeset
463
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 8
diff changeset
464
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 8
diff changeset
465 def test_modify_instance(self):
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 8
diff changeset
466 i = UploadInstance(_REMOTE, 'PrivateTags.dcm')['ID']
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 8
diff changeset
467 modified = DoPost(_REMOTE, '/instances/%s/modify' % i,
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 8
diff changeset
468 json.dumps({
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 8
diff changeset
469 "Replace" : {
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 8
diff changeset
470 "PatientName" : "hello",
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 8
diff changeset
471 #"PatientID" : "world"
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 8
diff changeset
472 },
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 8
diff changeset
473 "Remove" : [ "StationName" ],
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 8
diff changeset
474 "RemovePrivateTags" : None
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 8
diff changeset
475 }),
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 8
diff changeset
476 'application/json')
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 8
diff changeset
477 j = DoPost(_REMOTE, '/instances', modified, 'application/dicom')['ID']
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 8
diff changeset
478
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 8
diff changeset
479 self.assertNotEqual('hello', DoGet(_REMOTE, '/instances/%s/content/0010-0010' % i).strip())
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 8
diff changeset
480 #self.assertNotEqual('world', DoGet(_REMOTE, '/instances/%s/content/0010-0020' % i).strip())
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 8
diff changeset
481 self.assertEqual('LOGIQBOOK', DoGet(_REMOTE, '/instances/%s/content/0008-1010' % i).strip())
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 8
diff changeset
482 DoGet(_REMOTE, '/instances/%s/content/6003-1010' % i) # Some private tag
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 8
diff changeset
483
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 8
diff changeset
484 self.assertEqual('hello', DoGet(_REMOTE, '/instances/%s/content/0010-0010' % j).strip())
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 8
diff changeset
485 #self.assertEqual('world', DoGet(_REMOTE, '/instances/%s/content/0010-0020' % j).strip())
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 8
diff changeset
486 self.assertRaises(Exception, lambda: DoGet(_REMOTE, '/instances/%s/content/0008-1010' % j))
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 8
diff changeset
487 self.assertRaises(Exception, lambda: DoGet(_REMOTE, '/instances/%s/content/6003-1010' % j))
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 8
diff changeset
488
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 8
diff changeset
489
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 8
diff changeset
490 def test_modify_series(self):
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 8
diff changeset
491 # Upload 4 images from the same series
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 8
diff changeset
492 for i in range(4):
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 8
diff changeset
493 UploadInstance(_REMOTE, 'Brainix/Epi/IM-0001-000%d.dcm' % (i + 1))
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 8
diff changeset
494
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 8
diff changeset
495 origSeries = DoGet(_REMOTE, '/series')[0]
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 8
diff changeset
496 newSeries = DoPost(_REMOTE, '/series/%s/modify' % origSeries,
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 8
diff changeset
497 '{"Replace":{"PatientName":"Jodogne"}}',
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 8
diff changeset
498 'application/json')['ID']
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 8
diff changeset
499
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 8
diff changeset
500 self.assertEqual(origSeries, DoGet(_REMOTE, '/series/%s' % newSeries)['ModifiedFrom'])
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 8
diff changeset
501 instances = DoGet(_REMOTE, '/series/%s' % newSeries)['Instances']
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 8
diff changeset
502 self.assertEqual(4, len(instances))
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 8
diff changeset
503 for i in instances:
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 8
diff changeset
504 j = DoGet(_REMOTE, '/instances/%s' % i)['ModifiedFrom']
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 8
diff changeset
505 self.assertEqual(newSeries, DoGet(_REMOTE, '/instances/%s' % i)['ParentSeries'])
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 8
diff changeset
506 self.assertEqual(origSeries, DoGet(_REMOTE, '/instances/%s' % j)['ParentSeries'])
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 8
diff changeset
507
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 8
diff changeset
508 self.assertEqual('Jodogne', DoGet(_REMOTE, '/instances/%s/content/0010-0010' % i).strip())
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 8
diff changeset
509 self.assertNotEqual('Jodogne', DoGet(_REMOTE, '/instances/%s/content/0010-0010' % j).strip())
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 8
diff changeset
510
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 8
diff changeset
511
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 8
diff changeset
512 def test_modify_study(self):
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 8
diff changeset
513 # Upload 4 images from the 2 series of the same study
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 8
diff changeset
514 for i in range(4):
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 8
diff changeset
515 UploadInstance(_REMOTE, 'Brainix/Flair/IM-0001-000%d.dcm' % (i + 1))
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 8
diff changeset
516 UploadInstance(_REMOTE, 'Brainix/Epi/IM-0001-000%d.dcm' % (i + 1))
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 8
diff changeset
517
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 8
diff changeset
518 origStudy = DoGet(_REMOTE, '/studies')[0]
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 8
diff changeset
519 newStudy = DoPost(_REMOTE, '/studies/%s/modify' % origStudy,
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 8
diff changeset
520 '{"Replace":{"PatientName":"Jodogne"}}',
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 8
diff changeset
521 'application/json')['ID']
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 8
diff changeset
522
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 8
diff changeset
523 self.assertEqual(origStudy, DoGet(_REMOTE, '/studies/%s' % newStudy)['ModifiedFrom'])
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 8
diff changeset
524 series = DoGet(_REMOTE, '/studies/%s' % newStudy)['Series']
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 8
diff changeset
525 self.assertEqual(2, len(series))
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 8
diff changeset
526 for s in series:
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 8
diff changeset
527 ss = DoGet(_REMOTE, '/series/%s' % s)['ModifiedFrom']
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 8
diff changeset
528 self.assertEqual(newStudy, DoGet(_REMOTE, '/series/%s' % s)['ParentStudy'])
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 8
diff changeset
529 self.assertEqual(origStudy, DoGet(_REMOTE, '/series/%s' % ss)['ParentStudy'])
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 8
diff changeset
530
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 8
diff changeset
531 instances = DoGet(_REMOTE, '/series/%s' % s)['Instances']
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 8
diff changeset
532 for i in instances:
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 8
diff changeset
533 j = DoGet(_REMOTE, '/instances/%s' % i)['ModifiedFrom']
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 8
diff changeset
534 self.assertEqual(s, DoGet(_REMOTE, '/instances/%s' % i)['ParentSeries'])
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 8
diff changeset
535 self.assertEqual(ss, DoGet(_REMOTE, '/instances/%s' % j)['ParentSeries'])
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 8
diff changeset
536
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 8
diff changeset
537 self.assertEqual('Jodogne', DoGet(_REMOTE, '/instances/%s/content/0010-0010' % i).strip())
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 8
diff changeset
538 self.assertNotEqual('Jodogne', DoGet(_REMOTE, '/instances/%s/content/0010-0010' % j).strip())
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 8
diff changeset
539
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 8
diff changeset
540
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 8
diff changeset
541 def test_anonymize_series(self):
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 8
diff changeset
542 # Upload 4 images from the same series
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 8
diff changeset
543 for i in range(4):
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 8
diff changeset
544 UploadInstance(_REMOTE, 'Brainix/Epi/IM-0001-000%d.dcm' % (i + 1))
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 8
diff changeset
545
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 8
diff changeset
546 origSeries = DoGet(_REMOTE, '/series')[0]
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 8
diff changeset
547 newSeries = DoPost(_REMOTE, '/series/%s/anonymize' % origSeries,
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 8
diff changeset
548 '{}',
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 8
diff changeset
549 'application/json')['ID']
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 8
diff changeset
550
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 8
diff changeset
551 self.assertEqual(origSeries, DoGet(_REMOTE, '/series/%s' % newSeries)['AnonymizedFrom'])
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 8
diff changeset
552 instances = DoGet(_REMOTE, '/series/%s' % newSeries)['Instances']
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 8
diff changeset
553 self.assertEqual(4, len(instances))
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 8
diff changeset
554 for i in instances:
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 8
diff changeset
555 j = DoGet(_REMOTE, '/instances/%s' % i)['AnonymizedFrom']
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 8
diff changeset
556 self.assertEqual(newSeries, DoGet(_REMOTE, '/instances/%s' % i)['ParentSeries'])
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 8
diff changeset
557 self.assertEqual(origSeries, DoGet(_REMOTE, '/instances/%s' % j)['ParentSeries'])
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 8
diff changeset
558
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 8
diff changeset
559 DoGet(_REMOTE, '/instances/%s/content/0008-1010' % j)
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 8
diff changeset
560 self.assertRaises(Exception, lambda: DoGet(_REMOTE, '/instances/%s/content/0008-1010' % i))
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 8
diff changeset
561
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 8
diff changeset
562
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 8
diff changeset
563 def test_anonymize_study(self):
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 8
diff changeset
564 # Upload 4 images from the 2 series of the same study
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 8
diff changeset
565 for i in range(4):
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 8
diff changeset
566 UploadInstance(_REMOTE, 'Brainix/Flair/IM-0001-000%d.dcm' % (i + 1))
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 8
diff changeset
567 UploadInstance(_REMOTE, 'Brainix/Epi/IM-0001-000%d.dcm' % (i + 1))
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 8
diff changeset
568
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 8
diff changeset
569 origStudy = DoGet(_REMOTE, '/studies')[0]
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 8
diff changeset
570 newStudy = DoPost(_REMOTE,'/studies/%s/anonymize' % origStudy,
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 8
diff changeset
571 '{"Replace":{"PatientName":"Jodogne"}}',
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 8
diff changeset
572 'application/json')['ID']
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 8
diff changeset
573
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 8
diff changeset
574 self.assertEqual(origStudy, DoGet(_REMOTE, '/studies/%s' % newStudy)['AnonymizedFrom'])
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 8
diff changeset
575 series = DoGet(_REMOTE, '/studies/%s' % newStudy)['Series']
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 8
diff changeset
576 self.assertEqual(2, len(series))
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 8
diff changeset
577 for s in series:
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 8
diff changeset
578 ss = DoGet(_REMOTE, '/series/%s' % s)['AnonymizedFrom']
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 8
diff changeset
579 self.assertEqual(newStudy, DoGet(_REMOTE, '/series/%s' % s)['ParentStudy'])
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 8
diff changeset
580 self.assertEqual(origStudy, DoGet(_REMOTE, '/series/%s' % ss)['ParentStudy'])
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 8
diff changeset
581
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 8
diff changeset
582 instances = DoGet(_REMOTE, '/series/%s' % s)['Instances']
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 8
diff changeset
583 for i in instances:
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 8
diff changeset
584 j = DoGet(_REMOTE, '/instances/%s' % i)['AnonymizedFrom']
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 8
diff changeset
585 self.assertEqual(s, DoGet(_REMOTE, '/instances/%s' % i)['ParentSeries'])
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 8
diff changeset
586 self.assertEqual(ss, DoGet(_REMOTE, '/instances/%s' % j)['ParentSeries'])
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 8
diff changeset
587
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 8
diff changeset
588 self.assertEqual('Jodogne', DoGet(_REMOTE, '/instances/%s/content/0010-0010' % i).strip())
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 8
diff changeset
589 self.assertNotEqual('Jodogne', DoGet(_REMOTE, '/instances/%s/content/0010-0010' % j).strip())
11
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 10
diff changeset
590
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 10
diff changeset
591
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 10
diff changeset
592
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 10
diff changeset
593 def test_storescu(self):
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 10
diff changeset
594 # Check emptiness
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 10
diff changeset
595 e = DoGet(_REMOTE, '/exports')
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 10
diff changeset
596 self.assertEqual(0, len(e['Exports']))
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 10
diff changeset
597 self.assertEqual(0, e['Last'])
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 10
diff changeset
598 self.assertTrue(e['Done'])
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 10
diff changeset
599 e = DoGet(_REMOTE, '/exports?last')
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 10
diff changeset
600 self.assertEqual(0, len(e['Exports']))
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 10
diff changeset
601 self.assertEqual(0, e['Last'])
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 10
diff changeset
602 self.assertTrue(e['Done'])
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 10
diff changeset
603
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 10
diff changeset
604 # Add 1 instance
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 10
diff changeset
605 i = UploadInstance(_REMOTE, 'DummyCT.dcm')['ID']
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 10
diff changeset
606 self.assertEqual(0, len(DoGet(_LOCAL, '/patients')))
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 10
diff changeset
607
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 10
diff changeset
608 # Export the instance
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 10
diff changeset
609 j = DoPost(_REMOTE, '/modalities/orthanctest/store', str(i), 'text/plain') # instance
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 10
diff changeset
610 self.assertEqual(1, len(DoGet(_LOCAL, '/patients')))
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 10
diff changeset
611 self.assertEqual(1, len(DoGet(_LOCAL, '/studies')))
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 10
diff changeset
612 self.assertEqual(1, len(DoGet(_LOCAL, '/series')))
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 10
diff changeset
613 self.assertEqual(1, len(DoGet(_LOCAL, '/instances')))
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 10
diff changeset
614
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 10
diff changeset
615 e = DoGet(_REMOTE, '/exports')
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 10
diff changeset
616 self.assertEqual(1, len(e['Exports']))
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 10
diff changeset
617 self.assertTrue(e['Done'])
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 10
diff changeset
618 self.assertEqual(e['Exports'][-1]['Seq'], e['Last'])
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 10
diff changeset
619 e = DoGet(_REMOTE, '/exports?limit=1')
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 10
diff changeset
620 self.assertEqual(1, len(e['Exports']))
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 10
diff changeset
621 self.assertTrue(e['Done'])
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 10
diff changeset
622 self.assertEqual(e['Exports'][-1]['Seq'], e['Last'])
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 10
diff changeset
623 e = DoGet(_REMOTE, '/exports?last')
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 10
diff changeset
624 self.assertEqual(1, len(e['Exports']))
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 10
diff changeset
625 self.assertTrue(e['Done'])
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 10
diff changeset
626 self.assertEqual(e['Exports'][-1]['Seq'], e['Last'])
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 10
diff changeset
627 seqInstance = e['Last']
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 10
diff changeset
628
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 10
diff changeset
629 # Export the series
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 10
diff changeset
630 j = DoPost(_REMOTE, '/modalities/orthanctest/store', 'f2635388-f01d497a-15f7c06b-ad7dba06-c4c599fe', 'text/plain')
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 10
diff changeset
631
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 10
diff changeset
632 e = DoGet(_REMOTE, '/exports')
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 10
diff changeset
633 self.assertEqual(2, len(e['Exports']))
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 10
diff changeset
634 self.assertTrue(e['Done'])
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 10
diff changeset
635 self.assertEqual(e['Exports'][-1]['Seq'], e['Last'])
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 10
diff changeset
636 seqSeries = e['Last']
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 10
diff changeset
637 self.assertNotEqual(seqInstance, seqSeries)
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 10
diff changeset
638 e = DoGet(_REMOTE, '/exports?limit=1&since=0')
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 10
diff changeset
639 self.assertEqual(1, len(e['Exports']))
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 10
diff changeset
640 self.assertFalse(e['Done'])
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 10
diff changeset
641 self.assertEqual(e['Exports'][-1]['Seq'], seqInstance)
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 10
diff changeset
642 e = DoGet(_REMOTE, '/exports?limit=1&since=' + str(seqInstance))
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 10
diff changeset
643 self.assertEqual(1, len(e['Exports']))
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 10
diff changeset
644 self.assertTrue(e['Done'])
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 10
diff changeset
645 self.assertEqual(e['Exports'][-1]['Seq'], seqSeries)
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 10
diff changeset
646 e = DoGet(_REMOTE, '/exports?last')
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 10
diff changeset
647 self.assertEqual(1, len(e['Exports']))
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 10
diff changeset
648 self.assertTrue(e['Done'])
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 10
diff changeset
649 self.assertEqual(e['Exports'][-1]['Seq'], seqSeries)
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 10
diff changeset
650
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 10
diff changeset
651 # Export the study
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 10
diff changeset
652 j = DoPost(_REMOTE, '/modalities/orthanctest/store', 'b9c08539-26f93bde-c81ab0d7-bffaf2cb-a4d0bdd0', 'text/plain')
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 10
diff changeset
653 seqStudy = DoGet(_REMOTE, '/exports')['Last']
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 10
diff changeset
654
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 10
diff changeset
655 # Export the patient
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 10
diff changeset
656 j = DoPost(_REMOTE, '/modalities/orthanctest/store', '6816cb19-844d5aee-85245eba-28e841e6-2414fae2', 'text/plain')
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 10
diff changeset
657 self.assertEqual(1, len(DoGet(_LOCAL, '/patients')))
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 10
diff changeset
658 self.assertEqual(1, len(DoGet(_LOCAL, '/studies')))
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 10
diff changeset
659 self.assertEqual(1, len(DoGet(_LOCAL, '/series')))
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 10
diff changeset
660 self.assertEqual(1, len(DoGet(_LOCAL, '/instances')))
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 10
diff changeset
661
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 10
diff changeset
662 e = DoGet(_REMOTE, '/exports')
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 10
diff changeset
663 self.assertEqual(4, len(e['Exports']))
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 10
diff changeset
664 self.assertTrue(e['Done'])
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 10
diff changeset
665 self.assertEqual(e['Exports'][-1]['Seq'], e['Last'])
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 10
diff changeset
666 seqPatient = e['Last']
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 10
diff changeset
667 self.assertNotEqual(seqInstance, seqSeries)
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 10
diff changeset
668 self.assertNotEqual(seqSeries, seqStudy)
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 10
diff changeset
669 self.assertNotEqual(seqStudy, seqPatient)
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 10
diff changeset
670 self.assertTrue(seqInstance < seqSeries)
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 10
diff changeset
671 self.assertTrue(seqSeries < seqStudy)
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 10
diff changeset
672 self.assertTrue(seqStudy < seqPatient)
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 10
diff changeset
673 e = DoGet(_REMOTE, '/exports?limit=1&since=0')
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 10
diff changeset
674 self.assertEqual(1, len(e['Exports']))
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 10
diff changeset
675 self.assertFalse(e['Done'])
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 10
diff changeset
676 self.assertEqual(e['Exports'][-1]['Seq'], seqInstance)
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 10
diff changeset
677 e = DoGet(_REMOTE, '/exports?limit=1&since=' + str(seqInstance))
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 10
diff changeset
678 self.assertEqual(1, len(e['Exports']))
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 10
diff changeset
679 self.assertFalse(e['Done'])
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 10
diff changeset
680 self.assertEqual(e['Exports'][-1]['Seq'], seqSeries)
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 10
diff changeset
681 e = DoGet(_REMOTE, '/exports?limit=1&since=' + str(seqSeries))
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 10
diff changeset
682 self.assertEqual(1, len(e['Exports']))
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 10
diff changeset
683 self.assertFalse(e['Done'])
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 10
diff changeset
684 self.assertEqual(e['Exports'][-1]['Seq'], seqStudy)
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 10
diff changeset
685 e = DoGet(_REMOTE, '/exports?limit=1&since=' + str(seqStudy))
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 10
diff changeset
686 self.assertEqual(1, len(e['Exports']))
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 10
diff changeset
687 self.assertTrue(e['Done'])
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 10
diff changeset
688 self.assertEqual(e['Exports'][-1]['Seq'], seqPatient)
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 10
diff changeset
689 e = DoGet(_REMOTE, '/exports?last')
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 10
diff changeset
690 self.assertEqual(1, len(e['Exports']))
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 10
diff changeset
691 self.assertTrue(e['Done'])
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 10
diff changeset
692 self.assertEqual(e['Exports'][-1]['Seq'], seqPatient)
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 10
diff changeset
693
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 10
diff changeset
694
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 10
diff changeset
695 # Check the content of the logged information
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 10
diff changeset
696 e = DoGet(_REMOTE, '/exports')['Exports']
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 10
diff changeset
697
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 10
diff changeset
698 if 'PatientID' in e[0]:
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 10
diff changeset
699 # Since Orthanc 0.8.6
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 10
diff changeset
700 patient = 'PatientID'
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 10
diff changeset
701 study = 'StudyInstanceUID'
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 10
diff changeset
702 series = 'SeriesInstanceUID'
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 10
diff changeset
703 instance = 'SOPInstanceUID'
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 10
diff changeset
704 else:
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 10
diff changeset
705 # Up to Orthanc 0.8.5
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 10
diff changeset
706 patient = 'PatientId'
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 10
diff changeset
707 study = 'StudyInstanceUid'
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 10
diff changeset
708 series = 'SeriesInstanceUid'
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 10
diff changeset
709 instance = 'SopInstanceUid'
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 10
diff changeset
710
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 10
diff changeset
711 for k in range(4):
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 10
diff changeset
712 self.assertTrue('Date' in e[k])
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 10
diff changeset
713 self.assertTrue('Seq' in e[k])
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 10
diff changeset
714 self.assertEqual('orthanctest', e[k]['RemoteModality'])
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 10
diff changeset
715
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 10
diff changeset
716 self.assertEqual(10, len(e[0]))
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 10
diff changeset
717 self.assertEqual('Instance', e[0]['ResourceType'])
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 10
diff changeset
718 self.assertEqual('66a662ce-7430e543-bad44d47-0dc5a943-ec7a538d', e[0]['ID'])
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 10
diff changeset
719 self.assertEqual('/instances/66a662ce-7430e543-bad44d47-0dc5a943-ec7a538d', e[0]['Path'])
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 10
diff changeset
720 self.assertEqual('1.2.840.113619.2.176.2025.1499492.7040.1171286242.109', e[0][instance])
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 10
diff changeset
721 self.assertEqual('1.2.840.113619.2.176.2025.1499492.7391.1171285944.394', e[0][series])
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 10
diff changeset
722 self.assertEqual('1.2.840.113619.2.176.2025.1499492.7391.1171285944.390', e[0][study])
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 10
diff changeset
723 self.assertEqual('ozp00SjY2xG', e[0][patient])
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 10
diff changeset
724
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 10
diff changeset
725 self.assertEqual(9, len(e[1]))
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 10
diff changeset
726 self.assertEqual('Series', e[1]['ResourceType'])
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 10
diff changeset
727 self.assertEqual('f2635388-f01d497a-15f7c06b-ad7dba06-c4c599fe', e[1]['ID'])
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 10
diff changeset
728 self.assertEqual('/series/f2635388-f01d497a-15f7c06b-ad7dba06-c4c599fe', e[1]['Path'])
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 10
diff changeset
729 self.assertEqual('1.2.840.113619.2.176.2025.1499492.7391.1171285944.394', e[1][series])
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 10
diff changeset
730 self.assertEqual('1.2.840.113619.2.176.2025.1499492.7391.1171285944.390', e[1][study])
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 10
diff changeset
731 self.assertEqual('ozp00SjY2xG', e[1][patient])
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 10
diff changeset
732
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 10
diff changeset
733 self.assertEqual(8, len(e[2]))
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 10
diff changeset
734 self.assertEqual('Study', e[2]['ResourceType'])
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 10
diff changeset
735 self.assertEqual('b9c08539-26f93bde-c81ab0d7-bffaf2cb-a4d0bdd0', e[2]['ID'])
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 10
diff changeset
736 self.assertEqual('/studies/b9c08539-26f93bde-c81ab0d7-bffaf2cb-a4d0bdd0', e[2]['Path'])
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 10
diff changeset
737 self.assertEqual('1.2.840.113619.2.176.2025.1499492.7391.1171285944.390', e[2][study])
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 10
diff changeset
738 self.assertEqual('ozp00SjY2xG', e[2][patient])
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 10
diff changeset
739
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 10
diff changeset
740 self.assertEqual(7, len(e[3]))
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 10
diff changeset
741 self.assertEqual('Patient', e[3]['ResourceType'])
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 10
diff changeset
742 self.assertEqual('6816cb19-844d5aee-85245eba-28e841e6-2414fae2', e[3]['ID'])
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 10
diff changeset
743 self.assertEqual('/patients/6816cb19-844d5aee-85245eba-28e841e6-2414fae2', e[3]['Path'])
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 10
diff changeset
744 self.assertEqual('ozp00SjY2xG', e[3][patient])
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 10
diff changeset
745
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 10
diff changeset
746 DropOrthanc(_REMOTE)
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 10
diff changeset
747 self.assertEqual(0, len(DoGet(_REMOTE, '/exports')['Exports']))
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 10
diff changeset
748
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 10
diff changeset
749
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 10
diff changeset
750 def test_store_peer(self):
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 10
diff changeset
751 self.assertEqual(0, len(DoGet(_LOCAL, '/exports')['Exports']))
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 10
diff changeset
752 self.assertEqual(0, len(DoGet(_REMOTE, '/exports')['Exports']))
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 10
diff changeset
753
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 10
diff changeset
754 i = UploadInstance(_REMOTE, 'DummyCT.dcm')['ID']
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 10
diff changeset
755 self.assertEqual(0, len(DoGet(_LOCAL, '/patients')))
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 10
diff changeset
756 self.assertEqual(1, len(DoGet(_REMOTE, '/patients')))
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 10
diff changeset
757
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 10
diff changeset
758 j = DoPost(_REMOTE, '/peers/peer/store', str(i), 'text/plain')
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 10
diff changeset
759 self.assertEqual(1, len(DoGet(_LOCAL, '/patients')))
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 10
diff changeset
760 self.assertEqual(1, len(DoGet(_REMOTE, '/patients')))
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 10
diff changeset
761
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 10
diff changeset
762 self.assertEqual(1, len(DoGet(_REMOTE, '/exports')['Exports']))
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 10
diff changeset
763
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 10
diff changeset
764 DropOrthanc(_REMOTE)
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 10
diff changeset
765 self.assertEqual(0, len(DoGet(_REMOTE, '/exports')['Exports']))
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 10
diff changeset
766
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 10
diff changeset
767
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 10
diff changeset
768 def test_bulk_storescu(self):
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 10
diff changeset
769 self.assertEqual(0, len(DoGet(_LOCAL, '/patients')))
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 10
diff changeset
770
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 10
diff changeset
771 a = UploadInstance(_REMOTE, 'Knee/T1/IM-0001-0001.dcm')
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 10
diff changeset
772 b = UploadInstance(_REMOTE, 'Knee/T2/IM-0001-0001.dcm')
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 10
diff changeset
773
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 10
diff changeset
774 j = DoPost(_REMOTE, '/modalities/orthanctest/store', [ a['ID'], b['ID'] ], 'application/json')
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 10
diff changeset
775 self.assertEqual(2, len(DoGet(_LOCAL, '/instances')))
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 10
diff changeset
776
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 10
diff changeset
777 DropOrthanc(_LOCAL)
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 10
diff changeset
778
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 10
diff changeset
779 # Send using patient's UUID
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 10
diff changeset
780 self.assertEqual(0, len(DoGet(_LOCAL, '/instances')))
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 10
diff changeset
781 j = DoPost(_REMOTE, '/modalities/orthanctest/store',
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 10
diff changeset
782 [ 'ca29faea-b6a0e17f-067743a1-8b778011-a48b2a17' ], 'application/json')
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 10
diff changeset
783 self.assertEqual(2, len(DoGet(_LOCAL, '/instances')))
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 10
diff changeset
784
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 10
diff changeset
785
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 10
diff changeset
786 def test_color(self):
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 10
diff changeset
787 i = UploadInstance(_REMOTE, 'ColorTestMalaterre.dcm')['ID']
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 10
diff changeset
788 im = GetImage(_REMOTE, '/instances/%s/preview' % i)
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 10
diff changeset
789 self.assertEqual("RGB", im.mode)
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 10
diff changeset
790 self.assertEqual(41, im.size[0])
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 10
diff changeset
791 self.assertEqual(41, im.size[1])
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 10
diff changeset
792
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 10
diff changeset
793 # http://effbot.org/zone/pil-comparing-images.htm
13
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 12
diff changeset
794 truth = Image.open(GetDatabasePath('ColorTestMalaterre.png'))
11
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 10
diff changeset
795 self.assertTrue(ImageChops.difference(im, truth).getbbox() is None)
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 10
diff changeset
796
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 10
diff changeset
797
12
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 11
diff changeset
798 def test_faking_ruby_put(self):
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 11
diff changeset
799 UploadInstance(_REMOTE, 'Knee/T1/IM-0001-0001.dcm')
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 11
diff changeset
800 UploadInstance(_REMOTE, 'Brainix/Flair/IM-0001-0001.dcm')
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 11
diff changeset
801 self.assertEqual(2, len(DoGet(_REMOTE, '/patients')))
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 11
diff changeset
802 a = DoGet(_REMOTE, '/patients')[0]
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 11
diff changeset
803 b = DoGet(_REMOTE, '/patients')[1]
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 11
diff changeset
804 self.assertEqual(0, DoGet(_REMOTE, '/patients/%s/protected' % a))
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 11
diff changeset
805 DoGet(_REMOTE, '/patients/%s/protected' % a, data = { '_method' : 'PUT' }, body = '0')
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 11
diff changeset
806 self.assertEqual(0, DoGet(_REMOTE, '/patients/%s/protected' % a))
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 11
diff changeset
807 DoGet(_REMOTE, '/patients/%s/protected' % a, data = { '_method' : 'PUT' }, body = '1')
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 11
diff changeset
808 self.assertEqual(1, DoGet(_REMOTE, '/patients/%s/protected' % a))
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 11
diff changeset
809 DoGet(_REMOTE, '/patients/%s/protected' % a, data = { '_method' : 'PUT' }, body = '0')
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 11
diff changeset
810 self.assertEqual(0, DoGet(_REMOTE, '/patients/%s/protected' % a))
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 11
diff changeset
811
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 11
diff changeset
812
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 11
diff changeset
813 def test_faking_ruby_delete(self):
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 11
diff changeset
814 UploadInstance(_REMOTE, 'Knee/T1/IM-0001-0001.dcm')
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 11
diff changeset
815 UploadInstance(_REMOTE, 'Brainix/Flair/IM-0001-0001.dcm')
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 11
diff changeset
816 self.assertEqual(2, len(DoGet(_REMOTE, '/patients')))
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 11
diff changeset
817 a = DoGet(_REMOTE, '/patients')[0]
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 11
diff changeset
818 b = DoGet(_REMOTE, '/patients')[1]
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 11
diff changeset
819 DoGet(_REMOTE, '/patients/%s' % a, data = { '_method' : 'DELETE' })
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 11
diff changeset
820 self.assertEqual(1, len(DoGet(_REMOTE, '/patients')))
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 11
diff changeset
821 DoGet(_REMOTE, '/patients/%s' % b, data = { '_method' : 'DELETE' })
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 11
diff changeset
822 self.assertEqual(0, len(DoGet(_REMOTE, '/patients')))
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 11
diff changeset
823
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 11
diff changeset
824
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 11
diff changeset
825 def test_faking_google_put(self):
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 11
diff changeset
826 UploadInstance(_REMOTE, 'Knee/T1/IM-0001-0001.dcm')
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 11
diff changeset
827 UploadInstance(_REMOTE, 'Brainix/Flair/IM-0001-0001.dcm')
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 11
diff changeset
828 self.assertEqual(2, len(DoGet(_REMOTE, '/patients')))
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 11
diff changeset
829 a = DoGet(_REMOTE, '/patients')[0]
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 11
diff changeset
830 b = DoGet(_REMOTE, '/patients')[1]
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 11
diff changeset
831 self.assertEqual(0, DoGet(_REMOTE, '/patients/%s/protected' % a))
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 11
diff changeset
832 DoPost(_REMOTE, '/patients/%s/protected' % a, headers = { 'X-HTTP-Method-Override' : 'PUT' }, data = '0')
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 11
diff changeset
833 self.assertEqual(0, DoGet(_REMOTE, '/patients/%s/protected' % a))
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 11
diff changeset
834 DoPost(_REMOTE, '/patients/%s/protected' % a, headers = { 'X-HTTP-Method-Override' : 'PUT' }, data = '1')
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 11
diff changeset
835 self.assertEqual(1, DoGet(_REMOTE, '/patients/%s/protected' % a))
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 11
diff changeset
836 DoPost(_REMOTE, '/patients/%s/protected' % a, headers = { 'X-HTTP-Method-Override' : 'PUT' }, data = '0')
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 11
diff changeset
837 self.assertEqual(0, DoGet(_REMOTE, '/patients/%s/protected' % a))
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 11
diff changeset
838
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 11
diff changeset
839
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 11
diff changeset
840 def test_faking_google_delete(self):
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 11
diff changeset
841 UploadInstance(_REMOTE, 'Knee/T1/IM-0001-0001.dcm')
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 11
diff changeset
842 UploadInstance(_REMOTE, 'Brainix/Flair/IM-0001-0001.dcm')
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 11
diff changeset
843 self.assertEqual(2, len(DoGet(_REMOTE, '/patients')))
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 11
diff changeset
844 a = DoGet(_REMOTE, '/patients')[0]
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 11
diff changeset
845 b = DoGet(_REMOTE, '/patients')[1]
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 11
diff changeset
846 DoPost(_REMOTE, '/patients/%s' % a, headers = { 'X-HTTP-Method-Override' : 'DELETE' })
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 11
diff changeset
847 self.assertEqual(1, len(DoGet(_REMOTE, '/patients')))
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 11
diff changeset
848 DoPost(_REMOTE, '/patients/%s' % b, headers = { 'X-HTTP-Method-Override' : 'DELETE' })
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 11
diff changeset
849 self.assertEqual(0, len(DoGet(_REMOTE, '/patients')))
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 11
diff changeset
850
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 11
diff changeset
851
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 11
diff changeset
852 def test_lua(self):
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 11
diff changeset
853 self.assertEqual(42, DoPost(_REMOTE, '/tools/execute-script', 'print(42)'))
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 11
diff changeset
854 self.assertTrue(IsDefinedInLua(_REMOTE, 'PrintRecursive'))
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 11
diff changeset
855 self.assertFalse(IsDefinedInLua(_REMOTE, 'HelloWorld'))
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 11
diff changeset
856
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 11
diff changeset
857
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 11
diff changeset
858 def test_metadata(self):
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 11
diff changeset
859 UploadInstance(_REMOTE, 'Knee/T1/IM-0001-0001.dcm')
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 11
diff changeset
860 p = DoGet(_REMOTE, '/patients')[0]
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 11
diff changeset
861 i = DoGet(_REMOTE, '/instances')[0]
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 11
diff changeset
862
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 11
diff changeset
863 m = DoGet(_REMOTE, '/patients/%s/metadata' % p)
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 11
diff changeset
864 self.assertEqual(1, len(m))
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 11
diff changeset
865 self.assertEqual('LastUpdate', m[0])
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 11
diff changeset
866
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 11
diff changeset
867 m = DoGet(_REMOTE, '/instances/%s/metadata' % i)
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 11
diff changeset
868 self.assertEqual(3, len(m))
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 11
diff changeset
869 self.assertTrue('IndexInSeries' in m)
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 11
diff changeset
870 self.assertTrue('ReceptionDate' in m)
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 11
diff changeset
871 self.assertTrue('RemoteAET' in m)
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 11
diff changeset
872
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 11
diff changeset
873 # Play with custom metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 11
diff changeset
874 DoPut(_REMOTE, '/patients/%s/metadata/5555' % p, 'coucou')
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 11
diff changeset
875 m = DoGet(_REMOTE, '/patients/%s/metadata' % p)
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 11
diff changeset
876 self.assertEqual(2, len(m))
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 11
diff changeset
877 self.assertTrue('LastUpdate' in m)
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 11
diff changeset
878 self.assertTrue('5555' in m)
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 11
diff changeset
879 self.assertEqual('coucou', DoGet(_REMOTE, '/patients/%s/metadata/5555' % p))
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 11
diff changeset
880 DoPut(_REMOTE, '/patients/%s/metadata/5555' % p, 'hello')
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 11
diff changeset
881 self.assertEqual('hello', DoGet(_REMOTE, '/patients/%s/metadata/5555' % p))
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 11
diff changeset
882 DoDelete(_REMOTE, '/patients/%s/metadata/5555' % p)
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 11
diff changeset
883 m = DoGet(_REMOTE, '/patients/%s/metadata' % p)
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 11
diff changeset
884 self.assertEqual(1, len(m))
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 11
diff changeset
885 self.assertTrue('LastUpdate' in m)
13
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 12
diff changeset
886
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 12
diff changeset
887
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 12
diff changeset
888 def test_statistics(self):
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 12
diff changeset
889 # Upload 16 instances
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 12
diff changeset
890 for i in range(4):
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 12
diff changeset
891 UploadInstance(_REMOTE, 'Brainix/Flair/IM-0001-000%d.dcm' % (i + 1))
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 12
diff changeset
892 UploadInstance(_REMOTE, 'Brainix/Epi/IM-0001-000%d.dcm' % (i + 1))
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 12
diff changeset
893 UploadInstance(_REMOTE, 'Knee/T1/IM-0001-000%d.dcm' % (i + 1))
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 12
diff changeset
894 UploadInstance(_REMOTE, 'Knee/T2/IM-0001-000%d.dcm' % (i + 1))
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 12
diff changeset
895
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 12
diff changeset
896 s = DoGet(_REMOTE, '/statistics')
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 12
diff changeset
897 self.assertEqual(16, s['CountInstances'])
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 12
diff changeset
898 self.assertEqual(2, s['CountPatients'])
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 12
diff changeset
899 self.assertEqual(2, s['CountStudies'])
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 12
diff changeset
900 self.assertEqual(4, s['CountSeries'])
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 12
diff changeset
901 d = int(s['TotalUncompressedSize'])
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 12
diff changeset
902
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 12
diff changeset
903 e = 0
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 12
diff changeset
904 for patient in DoGet(_REMOTE, '/patients'):
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 12
diff changeset
905 s = DoGet(_REMOTE, '/patients/%s/statistics' % patient)
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 12
diff changeset
906 self.assertEqual(8, s['CountInstances'])
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 12
diff changeset
907 self.assertEqual(1, s['CountStudies'])
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 12
diff changeset
908 self.assertEqual(2, s['CountSeries'])
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 12
diff changeset
909 e += int(s['UncompressedSize'])
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 12
diff changeset
910
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 12
diff changeset
911 for study in DoGet(_REMOTE, '/studies'):
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 12
diff changeset
912 s = DoGet(_REMOTE, '/studies/%s/statistics' % study)
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 12
diff changeset
913 self.assertEqual(8, s['CountInstances'])
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 12
diff changeset
914 self.assertEqual(2, s['CountSeries'])
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 12
diff changeset
915 e += int(s['UncompressedSize'])
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 12
diff changeset
916
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 12
diff changeset
917 for series in DoGet(_REMOTE, '/series'):
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 12
diff changeset
918 s = DoGet(_REMOTE, '/series/%s/statistics' % series)
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 12
diff changeset
919 self.assertEqual(4, s['CountInstances'])
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 12
diff changeset
920 e += int(s['UncompressedSize'])
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 12
diff changeset
921
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 12
diff changeset
922 self.assertEqual(3 * d, e)
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 12
diff changeset
923
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 12
diff changeset
924
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 12
diff changeset
925 def test_custom_attachment(self):
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 12
diff changeset
926 UploadInstance(_REMOTE, 'Brainix/Flair/IM-0001-0001.dcm')
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 12
diff changeset
927 patient = DoGet(_REMOTE, '/patients')[0]
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 12
diff changeset
928 instance = DoGet(_REMOTE, '/instances')[0]
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 12
diff changeset
929 size = int(DoGet(_REMOTE, '/patients/%s/statistics' % patient)['DiskSize'])
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 12
diff changeset
930 self.assertEqual(size, int(DoGet(_REMOTE, '/statistics')['TotalDiskSize']))
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 12
diff changeset
931
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 12
diff changeset
932 self.assertEqual(0, len(DoGet(_REMOTE, '/patients/%s/attachments' % patient)))
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 12
diff changeset
933 self.assertEqual(2, len(DoGet(_REMOTE, '/instances/%s/attachments' % instance)))
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 12
diff changeset
934 self.assertTrue('dicom' in DoGet(_REMOTE, '/instances/%s/attachments' % instance))
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 12
diff changeset
935 self.assertTrue('dicom-as-json' in DoGet(_REMOTE, '/instances/%s/attachments' % instance))
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 12
diff changeset
936
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 12
diff changeset
937 self.assertRaises(Exception, lambda: DoPut(_REMOTE, '/patients/%s/attachments/22' % patient, 'hello'))
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 12
diff changeset
938 hello = 'hellohellohellohellohellohellohellohellohello'
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 12
diff changeset
939 DoPut(_REMOTE, '/patients/%s/attachments/1025' % patient, hello)
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 12
diff changeset
940 self.assertEqual(int(DoGet(_REMOTE, '/patients/%s/statistics' % patient)['DiskSize']),
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 12
diff changeset
941 int(DoGet(_REMOTE, '/statistics')['TotalDiskSize']))
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 12
diff changeset
942 self.assertEqual(int(DoGet(_REMOTE, '/patients/%s/statistics' % patient)['DiskSize']),
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 12
diff changeset
943 size + int(DoGet(_REMOTE, '/patients/%s/attachments/1025/compressed-size' % patient)))
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 12
diff changeset
944
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 12
diff changeset
945 DoPut(_REMOTE, '/patients/%s/attachments/1026' % patient, 'world')
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 12
diff changeset
946 self.assertEqual(int(DoGet(_REMOTE, '/patients/%s/statistics' % patient)['DiskSize']),
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 12
diff changeset
947 int(DoGet(_REMOTE, '/statistics')['TotalDiskSize']))
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 12
diff changeset
948 self.assertEqual(int(DoGet(_REMOTE, '/patients/%s/statistics' % patient)['DiskSize']),
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 12
diff changeset
949 size +
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 12
diff changeset
950 int(DoGet(_REMOTE, '/patients/%s/attachments/1025/compressed-size' % patient)) +
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 12
diff changeset
951 int(DoGet(_REMOTE, '/patients/%s/attachments/1026/compressed-size' % patient)))
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 12
diff changeset
952
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 12
diff changeset
953 self.assertEqual(2, len(DoGet(_REMOTE, '/patients/%s/attachments' % patient)))
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 12
diff changeset
954 self.assertEqual(hello, DoGet(_REMOTE, '/patients/%s/attachments/1025/data' % patient))
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 12
diff changeset
955 self.assertEqual('world', DoGet(_REMOTE, '/patients/%s/attachments/1026/data' % patient))
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 12
diff changeset
956 DoPost(_REMOTE, '/patients/%s/attachments/1025/verify-md5' % patient)
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 12
diff changeset
957 DoPost(_REMOTE, '/patients/%s/attachments/1026/verify-md5' % patient)
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 12
diff changeset
958 DoPut(_REMOTE, '/patients/%s/attachments/1026' % patient, 'world2')
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 12
diff changeset
959 self.assertEqual('world2', DoGet(_REMOTE, '/patients/%s/attachments/1026/data' % patient))
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 12
diff changeset
960
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 12
diff changeset
961 self.assertRaises(Exception, lambda: DoDelete(_REMOTE, '/instances/%s/attachments/dicom' % instance))
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 12
diff changeset
962 DoDelete(_REMOTE, '/patients/%s/attachments/1025' % patient)
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 12
diff changeset
963 self.assertEqual(int(DoGet(_REMOTE, '/patients/%s/statistics' % patient)['DiskSize']),
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 12
diff changeset
964 int(DoGet(_REMOTE, '/statistics')['TotalDiskSize']))
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 12
diff changeset
965 self.assertEqual(int(DoGet(_REMOTE, '/patients/%s/statistics' % patient)['DiskSize']),
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 12
diff changeset
966 size + int(DoGet(_REMOTE, '/patients/%s/attachments/1026/compressed-size' % patient)))
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 12
diff changeset
967
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 12
diff changeset
968 self.assertEqual(1, len(DoGet(_REMOTE, '/patients/%s/attachments' % patient)))
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 12
diff changeset
969 DoDelete(_REMOTE, '/patients/%s/attachments/1026' % patient)
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 12
diff changeset
970 self.assertEqual(0, len(DoGet(_REMOTE, '/patients/%s/attachments' % patient)))
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 12
diff changeset
971
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 12
diff changeset
972 self.assertEqual(int(DoGet(_REMOTE, '/patients/%s/statistics' % patient)['DiskSize']), size)
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 12
diff changeset
973 self.assertEqual(size, int(DoGet(_REMOTE, '/statistics')['TotalDiskSize']))
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 12
diff changeset
974
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 12
diff changeset
975
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 12
diff changeset
976 def test_incoming_storescu(self):
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 12
diff changeset
977 self.assertEqual(0, len(DoGet(_REMOTE, '/patients')))
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 12
diff changeset
978 subprocess.check_call([ 'storescu', _REMOTE['Server'], str(_REMOTE['DicomPort']),
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 12
diff changeset
979 GetDatabasePath('ColorTestImageJ.dcm') ])
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 12
diff changeset
980 self.assertEqual(1, len(DoGet(_REMOTE, '/patients')))
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 12
diff changeset
981
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 12
diff changeset
982
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 12
diff changeset
983 def test_incoming_findscu(self):
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 12
diff changeset
984 def CallFindScu(args):
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 12
diff changeset
985 p = subprocess.Popen([ 'findscu', '-P', '-aec', _REMOTE['DicomAet'], '-aet', _LOCAL['DicomAet'],
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 12
diff changeset
986 _REMOTE['Server'], str(_REMOTE['DicomPort']) ] + args,
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 12
diff changeset
987 stderr=subprocess.PIPE)
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 12
diff changeset
988 return p.communicate()[1]
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 12
diff changeset
989
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 12
diff changeset
990 UploadInstance(_REMOTE, 'Multiframe.dcm')
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 12
diff changeset
991 UploadInstance(_REMOTE, 'ColorTestImageJ.dcm')
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 12
diff changeset
992
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 12
diff changeset
993 i = CallFindScu([ '-k', '0008,0052=PATIENT', '-k', '0010,0010' ])
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 12
diff changeset
994 patientNames = re.findall('\(0010,0010\).*?\[(.*?)\]', i)
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 12
diff changeset
995 self.assertEqual(2, len(patientNames))
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 12
diff changeset
996 self.assertTrue('Test Patient BG ' in patientNames)
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 12
diff changeset
997 self.assertTrue('Anonymized' in patientNames)
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 12
diff changeset
998
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 12
diff changeset
999 i = CallFindScu([ '-k', '0008,0052=SERIES', '-k', '0008,0021' ])
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 12
diff changeset
1000 series = re.findall('\(0008,0021\).*?\[\s*(.*?)\s*\]', i)
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 12
diff changeset
1001 self.assertEqual(2, len(series))
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 12
diff changeset
1002 self.assertTrue('20070208' in series)
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 12
diff changeset
1003 self.assertTrue('19980312' in series)
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 12
diff changeset
1004
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 12
diff changeset
1005 i = CallFindScu([ '-k', '0008,0052=SERIES', '-k', 'PatientName=Anonymized' ])
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 12
diff changeset
1006 series = re.findall('\(0010,0010\).*?\[\s*(.*?)\s*\]', i)
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 12
diff changeset
1007 self.assertEqual(1, len(series))
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 12
diff changeset
1008
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 12
diff changeset
1009 # Test the "CaseSentitivePN" flag (false by default)
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 12
diff changeset
1010 i = CallFindScu([ '-k', '0008,0052=SERIES', '-k', 'PatientName=anonymized' ])
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 12
diff changeset
1011 series = re.findall('\(0010,0010\).*?\[\s*(.*?)\s*\]', i)
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 12
diff changeset
1012 self.assertEqual(1, len(series))
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 12
diff changeset
1013
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 12
diff changeset
1014
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 12
diff changeset
1015 def test_incoming_movescu(self):
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 12
diff changeset
1016 def CallMoveScu(args):
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 12
diff changeset
1017 subprocess.check_call([ 'movescu',
17
7c8500991a12 karsten
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 15
diff changeset
1018 '--move', _LOCAL['DicomAet'], # Target AET (i.e. storescp)
7c8500991a12 karsten
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 15
diff changeset
1019 '--call', _REMOTE['DicomAet'], # Called AET (i.e. Orthanc)
7c8500991a12 karsten
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 15
diff changeset
1020 '--aetitle', _LOCAL['DicomAet'], # Calling AET (i.e. storescp)
13
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 12
diff changeset
1021 _REMOTE['Server'], str(_REMOTE['DicomPort']) ] + args,
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 12
diff changeset
1022 stderr=subprocess.PIPE)
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 12
diff changeset
1023
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 12
diff changeset
1024 UploadInstance(_REMOTE, 'Multiframe.dcm')
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 12
diff changeset
1025
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 12
diff changeset
1026 self.assertEqual(0, len(DoGet(_LOCAL, '/patients')))
17
7c8500991a12 karsten
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 15
diff changeset
1027 CallMoveScu([ '--patient', '-k', '0008,0052=PATIENT', '-k', 'PatientID=none' ])
13
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 12
diff changeset
1028 self.assertEqual(0, len(DoGet(_LOCAL, '/patients')))
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 12
diff changeset
1029 CallMoveScu([ '--patient', '-k', '0008,0052=PATIENT', '-k', 'PatientID=12345678' ])
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 12
diff changeset
1030 self.assertEqual(1, len(DoGet(_LOCAL, '/patients')))
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 12
diff changeset
1031
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 12
diff changeset
1032
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 12
diff changeset
1033 def test_findscu(self):
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 12
diff changeset
1034 i = UploadInstance(_REMOTE, 'DummyCT.dcm')['ID']
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 12
diff changeset
1035 j = UploadInstance(_REMOTE, 'Issue22.dcm')['ID']
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 12
diff changeset
1036 k = UploadInstance(_REMOTE, 'ColorTestImageJ.dcm')['ID']
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 12
diff changeset
1037 DoPost(_REMOTE, '/modalities/orthanctest/store', str(i), 'text/plain')
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 12
diff changeset
1038
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 12
diff changeset
1039 # Test the "find-patient" level
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 12
diff changeset
1040 p = DoPost(_REMOTE, '/modalities/orthanctest/find-patient', { })
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 12
diff changeset
1041 self.assertEqual(1, len(p))
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 12
diff changeset
1042 self.assertEqual('ozp00SjY2xG', p[0]['PatientID'])
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 12
diff changeset
1043
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 12
diff changeset
1044 # Test wildcards constraints. The "LO" value representation
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 12
diff changeset
1045 # for PatientID is always case-sensitive, but the "PN" for
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 12
diff changeset
1046 # PatientName might depend on the implementation:
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 12
diff changeset
1047 # "GenerateConfigurationForTests.py" will force it to be case
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 12
diff changeset
1048 # insensitive (which was the default until Orthanc 0.8.6).
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 12
diff changeset
1049 p = DoPost(_REMOTE, '/modalities/orthanctest/find-patient', { 'PatientName' : 'K*' })
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 12
diff changeset
1050 self.assertEqual(1, len(p))
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 12
diff changeset
1051
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 12
diff changeset
1052 p = DoPost(_REMOTE, '/modalities/orthanctest/find-patient', { 'PatientName' : 'k*' })
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 12
diff changeset
1053 self.assertEqual(1, len(p))
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 12
diff changeset
1054
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 12
diff changeset
1055 p = DoPost(_REMOTE, '/modalities/orthanctest/find-patient', { 'PatientID' : 'ozp*' })
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 12
diff changeset
1056 self.assertEqual(1, len(p))
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 12
diff changeset
1057
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 12
diff changeset
1058 p = DoPost(_REMOTE, '/modalities/orthanctest/find-patient', { 'PatientID' : 'o?p*' })
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 12
diff changeset
1059 self.assertEqual(1, len(p))
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 12
diff changeset
1060
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 12
diff changeset
1061 p = DoPost(_REMOTE, '/modalities/orthanctest/find-patient', { 'PatientID' : '0?q*' })
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 12
diff changeset
1062 self.assertEqual(0, len(p))
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 12
diff changeset
1063
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 12
diff changeset
1064 p = DoPost(_REMOTE, '/modalities/orthanctest/find-patient', { 'PatientName' : 'B*' })
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 12
diff changeset
1065 self.assertEqual(0, len(p))
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 12
diff changeset
1066
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 12
diff changeset
1067 p = DoPost(_REMOTE, '/modalities/orthanctest/find-patient', { 'PatientName' : 'b*' })
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 12
diff changeset
1068 self.assertEqual(0, len(p))
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 12
diff changeset
1069
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 12
diff changeset
1070 DoPost(_REMOTE, '/modalities/orthanctest/store', str(j), 'text/plain')
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 12
diff changeset
1071 DoPost(_REMOTE, '/modalities/orthanctest/store', str(k), 'text/plain')
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 12
diff changeset
1072 DoPost(_REMOTE, '/modalities/orthanctest/find-patient', { })
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 12
diff changeset
1073 self.assertEqual(3, len(DoPost(_REMOTE, '/modalities/orthanctest/find-patient', { })))
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 12
diff changeset
1074
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 12
diff changeset
1075 p = DoPost(_REMOTE, '/modalities/orthanctest/find-patient', { 'PatientName' : 'A*' })
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 12
diff changeset
1076 self.assertEqual(2, len(p))
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 12
diff changeset
1077
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 12
diff changeset
1078 # Test the "find-study" level. This is the instance "ColorTestImageJ.dcm"
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 12
diff changeset
1079 s = DoPost(_REMOTE, '/modalities/orthanctest/find-study', { 'PatientID' : 'B9uTHKOZ' })
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 12
diff changeset
1080 self.assertEqual(1, len(s))
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 12
diff changeset
1081 self.assertEqual('20070208', s[0]['StudyDate'])
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 12
diff changeset
1082
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 12
diff changeset
1083 # Test range searches
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 12
diff changeset
1084 t = DoPost(_REMOTE, '/modalities/orthanctest/find-study', { 'PatientID' : 'B9uTHKOZ',
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 12
diff changeset
1085 'StudyDate' : '-20070101' })
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 12
diff changeset
1086 self.assertEqual(0, len(t))
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 12
diff changeset
1087
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 12
diff changeset
1088 t = DoPost(_REMOTE, '/modalities/orthanctest/find-study', { 'PatientID' : 'B9uTHKOZ',
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 12
diff changeset
1089 'StudyDate' : '20090101-' })
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 12
diff changeset
1090 self.assertEqual(0, len(t))
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 12
diff changeset
1091
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 12
diff changeset
1092 t = DoPost(_REMOTE, '/modalities/orthanctest/find-study', { 'PatientID' : 'B9uTHKOZ',
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 12
diff changeset
1093 'StudyDate' : '20070101-' })
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 12
diff changeset
1094 self.assertEqual(1, len(t))
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 12
diff changeset
1095
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 12
diff changeset
1096 t = DoPost(_REMOTE, '/modalities/orthanctest/find-study', { 'PatientID' : 'B9uTHKOZ',
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 12
diff changeset
1097 'StudyDate' : '-20090101' })
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 12
diff changeset
1098 self.assertEqual(1, len(t))
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 12
diff changeset
1099
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 12
diff changeset
1100 t = DoPost(_REMOTE, '/modalities/orthanctest/find-study', { 'PatientID' : 'B9uTHKOZ',
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 12
diff changeset
1101 'StudyDate' : '20070207-20070207' })
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 12
diff changeset
1102 self.assertEqual(0, len(t))
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 12
diff changeset
1103
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 12
diff changeset
1104 t = DoPost(_REMOTE, '/modalities/orthanctest/find-study', { 'PatientID' : 'B9uTHKOZ',
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 12
diff changeset
1105 'StudyDate' : '20070208-20070208' })
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 12
diff changeset
1106 self.assertEqual(1, len(t))
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 12
diff changeset
1107
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 12
diff changeset
1108 t = DoPost(_REMOTE, '/modalities/orthanctest/find-study', { 'PatientID' : 'B9uTHKOZ',
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 12
diff changeset
1109 'StudyDate' : '20070209-20070209' })
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 12
diff changeset
1110 self.assertEqual(0, len(t))
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 12
diff changeset
1111
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 12
diff changeset
1112 # Test the ModalitiesInStudy tag
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 12
diff changeset
1113 t = DoPost(_REMOTE, '/modalities/orthanctest/find-study', {
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 12
diff changeset
1114 'PatientID' : 'B9uTHKOZ',
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 12
diff changeset
1115 'ModalitiesInStudy' : 'US' })
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 12
diff changeset
1116 self.assertEqual(0, len(t))
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 12
diff changeset
1117
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 12
diff changeset
1118 t = DoPost(_REMOTE, '/modalities/orthanctest/find-study', {
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 12
diff changeset
1119 'PatientID' : 'B9uTHKOZ',
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 12
diff changeset
1120 'ModalitiesInStudy' : 'CT' })
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 12
diff changeset
1121 self.assertEqual(1, len(t))
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 12
diff changeset
1122
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 12
diff changeset
1123 t = DoPost(_REMOTE, '/modalities/orthanctest/find-study', {
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 12
diff changeset
1124 'PatientID' : 'B9uTHKOZ',
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 12
diff changeset
1125 'ModalitiesInStudy' : 'US\\CT' })
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 12
diff changeset
1126 self.assertEqual(1, len(t))
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 12
diff changeset
1127
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 12
diff changeset
1128 # Test the "find-series" level
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 12
diff changeset
1129 t = DoPost(_REMOTE, '/modalities/orthanctest/find-series', {
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 12
diff changeset
1130 'PatientID' : 'B9uTHKOZ',
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 12
diff changeset
1131 'StudyInstanceUID' : s[0]['StudyInstanceUID'] })
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 12
diff changeset
1132 self.assertEqual(1, len(t))
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 12
diff changeset
1133
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 12
diff changeset
1134 # Test "\" separator
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 12
diff changeset
1135 t = DoPost(_REMOTE, '/modalities/orthanctest/find-series', {
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 12
diff changeset
1136 'PatientID' : 'B9uTHKOZ',
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 12
diff changeset
1137 'StudyInstanceUID' : s[0]['StudyInstanceUID'],
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 12
diff changeset
1138 'Modality' : 'MR\\CT\\US' })
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 12
diff changeset
1139 self.assertEqual(1, len(t))
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 12
diff changeset
1140
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 12
diff changeset
1141 t = DoPost(_REMOTE, '/modalities/orthanctest/find-series', {
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 12
diff changeset
1142 'PatientID' : 'B9uTHKOZ',
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 12
diff changeset
1143 'StudyInstanceUID' : s[0]['StudyInstanceUID'],
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 12
diff changeset
1144 'Modality' : 'MR\\US' })
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 12
diff changeset
1145 self.assertEqual(0, len(t))
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 12
diff changeset
1146
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 12
diff changeset
1147
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 12
diff changeset
1148 def test_update_modalities(self):
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 12
diff changeset
1149 try:
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 12
diff changeset
1150 DoDelete(_REMOTE, '/modalities/toto')
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 12
diff changeset
1151 except:
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 12
diff changeset
1152 pass
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 12
diff changeset
1153 try:
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 12
diff changeset
1154 DoDelete(_REMOTE, '/modalities/tata')
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 12
diff changeset
1155 except:
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 12
diff changeset
1156 pass
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 12
diff changeset
1157 self.assertRaises(Exception, lambda: DoGet(_REMOTE, '/modalities/toto'))
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 12
diff changeset
1158 DoPut(_REMOTE, '/modalities/toto', [ "STORESCP", "localhost", 2000 ])
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 12
diff changeset
1159 DoPut(_REMOTE, '/modalities/tata', [ "STORESCP", "localhost", 2000, 'MedInria' ])
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 12
diff changeset
1160 self.assertRaises(Exception, lambda: DoPut(_REMOTE, '/modalities/toto', [ "STORESCP", "localhost", 2000, 'MedInriaaa' ]))
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 12
diff changeset
1161 self.assertTrue('store' in DoGet(_REMOTE, '/modalities/toto'))
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 12
diff changeset
1162 self.assertTrue('store' in DoGet(_REMOTE, '/modalities/tata'))
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 12
diff changeset
1163 DoDelete(_REMOTE, '/modalities/toto')
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 12
diff changeset
1164 DoDelete(_REMOTE, '/modalities/tata')
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 12
diff changeset
1165 self.assertRaises(Exception, lambda: DoGet(_REMOTE, '/modalities/toto'))
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 12
diff changeset
1166 self.assertRaises(Exception, lambda: DoGet(_REMOTE, '/modalities/tata'))
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 12
diff changeset
1167
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 12
diff changeset
1168
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 12
diff changeset
1169 def test_update_peers(self):
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 12
diff changeset
1170 # curl -X PUT http://localhost:8042/peers/toto -d '["http://localhost:8042/"]' -v
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 12
diff changeset
1171 try:
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 12
diff changeset
1172 DoDelete(_REMOTE, '/peers/toto')
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 12
diff changeset
1173 except:
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 12
diff changeset
1174 pass
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 12
diff changeset
1175 try:
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 12
diff changeset
1176 DoDelete(_REMOTE, '/peers/tata')
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 12
diff changeset
1177 except:
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 12
diff changeset
1178 pass
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 12
diff changeset
1179 self.assertRaises(Exception, lambda: DoGet(_REMOTE, '/peers/toto'))
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 12
diff changeset
1180 DoPut(_REMOTE, '/peers/toto', [ 'http://localhost:8042/' ])
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 12
diff changeset
1181 DoPut(_REMOTE, '/peers/tata', [ 'http://localhost:8042/', 'user', 'pass' ])
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 12
diff changeset
1182 self.assertRaises(Exception, lambda: DoPut(_REMOTE, '/peers/toto', [ 'http://localhost:8042/', 'a' ]))
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 12
diff changeset
1183 self.assertRaises(Exception, lambda: DoPut(_REMOTE, '/peers/toto', [ 'http://localhost:8042/', 'a', 'b', 'c' ]))
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 12
diff changeset
1184 self.assertTrue('store' in DoGet(_REMOTE, '/peers/toto'))
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 12
diff changeset
1185 self.assertTrue('store' in DoGet(_REMOTE, '/peers/tata'))
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 12
diff changeset
1186 DoDelete(_REMOTE, '/peers/toto')
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 12
diff changeset
1187 DoDelete(_REMOTE, '/peers/tata')
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 12
diff changeset
1188 self.assertRaises(Exception, lambda: DoGet(_REMOTE, '/peers/toto'))
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 12
diff changeset
1189 self.assertRaises(Exception, lambda: DoGet(_REMOTE, '/peers/tata'))
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 12
diff changeset
1190
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 12
diff changeset
1191
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 12
diff changeset
1192 def test_mesterhazy_modification(self):
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 12
diff changeset
1193 # When I modify a series ( eg. curl
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 12
diff changeset
1194 # http://localhost:8042/series/uidhere/modify -X POST -d
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 12
diff changeset
1195 # '{"Replace":{"SeriesDate":"19990101"}}' ) the modified
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 12
diff changeset
1196 # series is added to a new Study, instead of the existing
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 12
diff changeset
1197 # Study. Fixed in Orthanc 0.7.5
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 12
diff changeset
1198
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 12
diff changeset
1199 u = UploadInstance(_REMOTE, 'DummyCT.dcm')
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 12
diff changeset
1200 study = 'b9c08539-26f93bde-c81ab0d7-bffaf2cb-a4d0bdd0'
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 12
diff changeset
1201 series = 'f2635388-f01d497a-15f7c06b-ad7dba06-c4c599fe'
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 12
diff changeset
1202
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 12
diff changeset
1203 modified = DoPost(_REMOTE, '/series/%s/modify' % series,
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 12
diff changeset
1204 json.dumps({ "Replace" : { "SeriesDate" : "19990101" }}))
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 12
diff changeset
1205
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 12
diff changeset
1206 self.assertEqual(study, DoGet(_REMOTE, '/series/%s' % modified['ID']) ['ParentStudy'])
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 12
diff changeset
1207
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 12
diff changeset
1208
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 12
diff changeset
1209 def test_create(self):
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 12
diff changeset
1210 i = DoPost(_REMOTE, '/tools/create-dicom',
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 12
diff changeset
1211 json.dumps({
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 12
diff changeset
1212 'PatientName' : 'Jodogne',
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 12
diff changeset
1213 'Modality' : 'CT',
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 12
diff changeset
1214 'PixelData' : 'data:image/png;base64,iVBORw0KGgoAAAANSUhEUgAAAAUAAAAFCAYAAACNbyblAAAAHElEQVQI12P4//8/w38GIAXDIBKE0DHxgljNBAAO9TXL0Y4OHwAAAABJRU5ErkJggg==' # red dot in RGBA
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 12
diff changeset
1215 }))
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 12
diff changeset
1216
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 12
diff changeset
1217 self.assertEqual('Jodogne', DoGet(_REMOTE, '/instances/%s/content/PatientName' % i['ID']).strip())
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 12
diff changeset
1218 self.assertEqual('CT', DoGet(_REMOTE, '/instances/%s/content/Modality' % i['ID']).strip())
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 12
diff changeset
1219
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 12
diff changeset
1220 png = GetImage(_REMOTE, '/instances/%s/preview' % i['ID'])
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 12
diff changeset
1221 self.assertEqual((5, 5), png.size)
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 12
diff changeset
1222
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 12
diff changeset
1223
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 12
diff changeset
1224 def test_pilates(self):
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 12
diff changeset
1225 # "SCU failed error when accessing orthanc with osirix" by
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 12
diff changeset
1226 # Pilates Agentur (Mar 10, 2014 at 9:33 PM)
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 12
diff changeset
1227 i = UploadInstance(_REMOTE, 'PilatesArgenturGEUltrasoundOsiriX.dcm')['ID']
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 12
diff changeset
1228 self.assertEqual(0, len(DoGet(_LOCAL, '/patients')))
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 12
diff changeset
1229 j = DoPost(_REMOTE, '/modalities/orthanctest/store', str(i), 'text/plain')
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 12
diff changeset
1230 self.assertEqual(1, len(DoGet(_LOCAL, '/patients')))
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 12
diff changeset
1231
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 12
diff changeset
1232
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 12
diff changeset
1233 def test_shared_tags(self):
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 12
diff changeset
1234 a = UploadInstance(_REMOTE, 'Knee/T1/IM-0001-0001.dcm')['ID']
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 12
diff changeset
1235 b = UploadInstance(_REMOTE, 'Knee/T1/IM-0001-0002.dcm')['ID']
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 12
diff changeset
1236 p = DoGet(_REMOTE, '/patients')[0]
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 12
diff changeset
1237
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 12
diff changeset
1238 self.assertTrue('0010,0010' in DoGet(_REMOTE, '/patients/%s/shared-tags' % p))
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 12
diff changeset
1239 self.assertTrue('PatientName' in DoGet(_REMOTE, '/patients/%s/shared-tags?simplify' % p))
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 12
diff changeset
1240 self.assertTrue('0008,1030' in DoGet(_REMOTE, '/patients/%s/shared-tags' % p))
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 12
diff changeset
1241 self.assertTrue('StudyDescription' in DoGet(_REMOTE, '/patients/%s/shared-tags?simplify' % p))
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 12
diff changeset
1242 self.assertTrue('0008,103e' in DoGet(_REMOTE, '/patients/%s/shared-tags' % p))
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 12
diff changeset
1243 self.assertTrue('SeriesDescription' in DoGet(_REMOTE, '/patients/%s/shared-tags?simplify' % p))
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 12
diff changeset
1244 self.assertFalse('0008,0018' in DoGet(_REMOTE, '/patients/%s/shared-tags' % p))
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 12
diff changeset
1245 self.assertFalse('SOPInstanceUID' in DoGet(_REMOTE, '/patients/%s/shared-tags?simplify' % p))
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 12
diff changeset
1246
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 12
diff changeset
1247 self.assertTrue('0008,0018' in DoGet(_REMOTE, '/instances/%s/tags' % a))
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 12
diff changeset
1248 self.assertTrue('SOPInstanceUID' in DoGet(_REMOTE, '/instances/%s/tags?simplify' % a))
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 12
diff changeset
1249
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 12
diff changeset
1250
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 12
diff changeset
1251 def test_modules(self):
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 12
diff changeset
1252 a = UploadInstance(_REMOTE, 'Knee/T1/IM-0001-0001.dcm')['ID']
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 12
diff changeset
1253 p = DoGet(_REMOTE, '/patients')[0]
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 12
diff changeset
1254 s = DoGet(_REMOTE, '/studies')[0]
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 12
diff changeset
1255 t = DoGet(_REMOTE, '/series')[0]
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 12
diff changeset
1256
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 12
diff changeset
1257 self.assertTrue('0010,0010' in DoGet(_REMOTE, '/patients/%s/module' % p))
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 12
diff changeset
1258 self.assertTrue('PatientName' in DoGet(_REMOTE, '/patients/%s/module?simplify' % p))
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 12
diff changeset
1259 self.assertTrue('0010,0010' in DoGet(_REMOTE, '/studies/%s/module-patient' % p))
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 12
diff changeset
1260 self.assertTrue('PatientName' in DoGet(_REMOTE, '/studies/%s/module-patient?simplify' % p))
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 12
diff changeset
1261 self.assertTrue('0008,1030' in DoGet(_REMOTE, '/studies/%s/module' % s))
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 12
diff changeset
1262 self.assertTrue('StudyDescription' in DoGet(_REMOTE, '/studies/%s/module?simplify' % s))
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 12
diff changeset
1263 self.assertTrue('0008,103e' in DoGet(_REMOTE, '/series/%s/module' % p))
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 12
diff changeset
1264 self.assertTrue('SeriesDescription' in DoGet(_REMOTE, '/series/%s/module?simplify' % p))
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 12
diff changeset
1265 self.assertTrue('0008,0018' in DoGet(_REMOTE, '/instances/%s/module' % a))
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 12
diff changeset
1266 self.assertTrue('SOPInstanceUID' in DoGet(_REMOTE, '/instances/%s/module?simplify' % a))
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 12
diff changeset
1267
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 12
diff changeset
1268
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 12
diff changeset
1269 def test_auto_directory(self):
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 12
diff changeset
1270 a = UploadInstance(_REMOTE, 'Knee/T1/IM-0001-0001.dcm')['ID']
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 12
diff changeset
1271 self.assertTrue('now' in DoGet(_REMOTE, '/tools'))
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 12
diff changeset
1272 self.assertTrue('dicom-conformance' in DoGet(_REMOTE, '/tools'))
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 12
diff changeset
1273 self.assertTrue(len(DoGet(_REMOTE, '/tools/dicom-conformance')) > 1000)
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 12
diff changeset
1274 self.assertTrue('orthanctest' in DoGet(_REMOTE, '/modalities'))
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 12
diff changeset
1275 self.assertTrue('echo' in DoGet(_REMOTE, '/modalities/orthanctest'))
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 12
diff changeset
1276 self.assertTrue('find' in DoGet(_REMOTE, '/modalities/orthanctest'))
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 12
diff changeset
1277 self.assertTrue('find-instance' in DoGet(_REMOTE, '/modalities/orthanctest'))
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 12
diff changeset
1278 self.assertTrue('find-patient' in DoGet(_REMOTE, '/modalities/orthanctest'))
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 12
diff changeset
1279 self.assertTrue('find-series' in DoGet(_REMOTE, '/modalities/orthanctest'))
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 12
diff changeset
1280 self.assertTrue('find-study' in DoGet(_REMOTE, '/modalities/orthanctest'))
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 12
diff changeset
1281 self.assertTrue('store' in DoGet(_REMOTE, '/modalities/orthanctest'))
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 12
diff changeset
1282 self.assertTrue('store' in DoGet(_REMOTE, '/peers/peer'))
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 12
diff changeset
1283 self.assertTrue('matlab' in DoGet(_REMOTE, '/instances/%s/frames/0' % a))
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 12
diff changeset
1284 self.assertRaises(Exception, lambda: DoGet(_REMOTE, '/tools/nope'))
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 12
diff changeset
1285
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 12
diff changeset
1286
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 12
diff changeset
1287 def test_echo(self):
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 12
diff changeset
1288 DoPost(_REMOTE, '/modalities/orthanctest/echo')
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 12
diff changeset
1289
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 12
diff changeset
1290
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 12
diff changeset
1291 def test_xml(self):
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 12
diff changeset
1292 json = DoGet(_REMOTE, '/tools', headers = { 'accept' : 'application/json' })
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 12
diff changeset
1293 xml = minidom.parseString(DoGet(_REMOTE, '/tools', headers = { 'accept' : 'application/xml' }))
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 12
diff changeset
1294 items = xml.getElementsByTagName('root')[0].getElementsByTagName('item')
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 12
diff changeset
1295 self.assertEqual(len(items), len(json))
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 12
diff changeset
1296
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 12
diff changeset
1297 self.assertTrue('dicom-conformance' in json)
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 12
diff changeset
1298
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 12
diff changeset
1299 ok = False
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 12
diff changeset
1300 for i in items:
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 12
diff changeset
1301 if i.childNodes[0].data == 'dicom-conformance':
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 12
diff changeset
1302 ok = True
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 12
diff changeset
1303 self.assertTrue(ok)
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 12
diff changeset
1304
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 12
diff changeset
1305
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 12
diff changeset
1306 def test_issue_16(self):
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 12
diff changeset
1307 i = UploadInstance(_REMOTE, 'Issue16.dcm')['ID']
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 12
diff changeset
1308 t = DoGet(_REMOTE, '/instances/%s/tags?simplify' % i)['FrameIncrementPointer']
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 12
diff changeset
1309 self.assertEqual('0018,1063', t)
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 12
diff changeset
1310
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 12
diff changeset
1311
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 12
diff changeset
1312 def test_issue_22(self):
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 12
diff changeset
1313 s = UploadInstance(_REMOTE, 'Issue22.dcm')['ID']
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 12
diff changeset
1314 a = [
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 12
diff changeset
1315 "f804691f62197040438f4627c6b994f1", # Frame 0
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 12
diff changeset
1316 "c69eee9a51eea3e8611e82e578897254",
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 12
diff changeset
1317 "315666be83e2d0111c77bc0996d84901",
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 12
diff changeset
1318 "3e27aa959d911172c48a1436443c72b1",
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 12
diff changeset
1319 "958642c9e7e9d232d3869faff546058c",
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 12
diff changeset
1320 "5e7ea8e3e4230cae707d143481355c59",
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 12
diff changeset
1321 "eda37f83558d858a596175aed8b2ad47",
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 12
diff changeset
1322 "486713bd2895c4ecbe0e97715ac7f80a",
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 12
diff changeset
1323 "091ef729eb169e67da8a0faa9631f9a8",
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 12
diff changeset
1324 "5aa2b8c7ffe0a483efaa8e12417686ca",
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 12
diff changeset
1325 "e2f39e85896fe58876654b94cd0b5013",
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 12
diff changeset
1326 "6fd2129e4950abbe1be053bc814d5da8",
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 12
diff changeset
1327 "c3331a8ba7a757f3d423735ab7fa81f9",
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 12
diff changeset
1328 "746f808582156734dd6b6fdfd3a0b72c",
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 12
diff changeset
1329 "8075ea2b227a70c60ea6b7b75a6bb190",
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 12
diff changeset
1330 "806b8b3e300c615099c11a5ec23465aa",
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 12
diff changeset
1331 "7c836aa298ba6eef96434579af631a11",
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 12
diff changeset
1332 "a0357dc9f4f72d73a885c33d7c287446",
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 12
diff changeset
1333 "f25ba3be1cc7d7fad95706adc199ea7d",
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 12
diff changeset
1334 "8b114c526b8cbed6cad8a3248b7b480c",
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 12
diff changeset
1335 "44e6670f127e612a2b4aa60a0d207698",
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 12
diff changeset
1336 "b8945f90fe02facf2ace24ca1ecbe0a5",
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 12
diff changeset
1337 "95c796c2fa8f59018b15cf2987b1f79b",
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 12
diff changeset
1338 "ce0a51ab30224205b44920221dc27351", # Frame 23
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 12
diff changeset
1339 ]
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 12
diff changeset
1340
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 12
diff changeset
1341 self.assertEqual(24, len(DoGet(_REMOTE, '/instances/%s/frames' % s)))
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 12
diff changeset
1342 self.assertRaises(Exception, lambda: DoGet(_REMOTE, '/instances/%s/frames/24/preview' % s))
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 12
diff changeset
1343
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 12
diff changeset
1344 for i in range(len(a)):
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 12
diff changeset
1345 self.assertEqual(a[i], ComputeMD5(DoGet(_REMOTE, '/instances/%s/frames/%d/preview' % (s, i))))
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 12
diff changeset
1346
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 12
diff changeset
1347
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 12
diff changeset
1348 def test_issue_19(self):
21
2a29bcff60a7 tests of image decoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 18
diff changeset
1349 # This is an image with "YBR_FULL" photometric interpretation, it is not supported by Orthanc
13
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 12
diff changeset
1350 # gdcmconv -i /home/jodogne/DICOM/GdcmDatabase/US_DataSet/HDI5000_US/3EAF5E01 -w -o Issue19.dcm
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 12
diff changeset
1351
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 12
diff changeset
1352 a = UploadInstance(_REMOTE, 'Issue19.dcm')['ID']
21
2a29bcff60a7 tests of image decoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 18
diff changeset
1353 self.assertRaises(Exception, lambda: DoGet(_REMOTE, '/instances/941ad3c8-05d05b88-560459f9-0eae0e20-6cddd533/preview'))
13
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 12
diff changeset
1354
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 12
diff changeset
1355
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 12
diff changeset
1356 def test_issue_37(self):
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 12
diff changeset
1357 # Same test for issues 35 and 37. Fixed in Orthanc 0.9.1
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 12
diff changeset
1358 u = UploadInstance(_REMOTE, 'Beaufix/IM-0001-0001.dcm')['ID']
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 12
diff changeset
1359
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 12
diff changeset
1360 a = DoPost(_REMOTE, '/tools/find', { 'Level' : 'Series',
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 12
diff changeset
1361 'CaseSensitive' : True,
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 12
diff changeset
1362 'Query' : { 'StationName' : 'SMR4-MP3' }})
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 12
diff changeset
1363 self.assertEqual(1, len(a))
14
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 13
diff changeset
1364
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 13
diff changeset
1365
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 13
diff changeset
1366 def test_rest_find(self):
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 13
diff changeset
1367 # Upload 8 instances
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 13
diff changeset
1368 for i in range(2):
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 13
diff changeset
1369 UploadInstance(_REMOTE, 'Brainix/Flair/IM-0001-000%d.dcm' % (i + 1))
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 13
diff changeset
1370 UploadInstance(_REMOTE, 'Brainix/Epi/IM-0001-000%d.dcm' % (i + 1))
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 13
diff changeset
1371 UploadInstance(_REMOTE, 'Knee/T1/IM-0001-000%d.dcm' % (i + 1))
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 13
diff changeset
1372 UploadInstance(_REMOTE, 'Knee/T2/IM-0001-000%d.dcm' % (i + 1))
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 13
diff changeset
1373
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 13
diff changeset
1374 a = DoPost(_REMOTE, '/tools/find', { 'Level' : 'Patient',
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 13
diff changeset
1375 'CaseSensitive' : False,
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 13
diff changeset
1376 'Query' : { 'PatientName' : '*n*' }})
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 13
diff changeset
1377 self.assertEqual(2, len(a))
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 13
diff changeset
1378
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 13
diff changeset
1379 a = DoPost(_REMOTE, '/tools/find', { 'Level' : 'Patient',
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 13
diff changeset
1380 'CaseSensitive' : True,
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 13
diff changeset
1381 'Query' : { 'PatientName' : '*n*' }})
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 13
diff changeset
1382 self.assertEqual(0, len(a))
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 13
diff changeset
1383
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 13
diff changeset
1384 a = DoPost(_REMOTE, '/tools/find', { 'Expand' : True,
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 13
diff changeset
1385 'Level' : 'Patient',
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 13
diff changeset
1386 'CaseSensitive' : False,
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 13
diff changeset
1387 'Query' : { 'PatientName' : '*ne*' }})
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 13
diff changeset
1388 self.assertEqual(1, len(a))
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 13
diff changeset
1389 self.assertEqual('20080822', a[0]['MainDicomTags']['PatientBirthDate'])
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 13
diff changeset
1390
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 13
diff changeset
1391 a = DoPost(_REMOTE, '/tools/find', { 'Level' : 'Patient',
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 13
diff changeset
1392 'CaseSensitive' : True,
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 13
diff changeset
1393 'Query' : { 'PatientName' : '*ne*' }})
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 13
diff changeset
1394 self.assertEqual(0, len(a))
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 13
diff changeset
1395
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 13
diff changeset
1396 a = DoPost(_REMOTE, '/tools/find', { 'Level' : 'Study',
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 13
diff changeset
1397 'CaseSensitive' : True,
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 13
diff changeset
1398 'Query' : { 'PatientName' : '*NE*' }})
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 13
diff changeset
1399 self.assertEqual(1, len(a))
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 13
diff changeset
1400
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 13
diff changeset
1401 a = DoPost(_REMOTE, '/tools/find', { 'Level' : 'Series',
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 13
diff changeset
1402 'CaseSensitive' : True,
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 13
diff changeset
1403 'Query' : { 'PatientName' : '*NE*' }})
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 13
diff changeset
1404 self.assertEqual(2, len(a))
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 13
diff changeset
1405
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 13
diff changeset
1406 a = DoPost(_REMOTE, '/tools/find', { 'Level' : 'Instance',
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 13
diff changeset
1407 'CaseSensitive' : True,
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 13
diff changeset
1408 'Query' : { 'PatientName' : '*NE*' }})
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 13
diff changeset
1409 self.assertEqual(4, len(a))
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 13
diff changeset
1410
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 13
diff changeset
1411 a = DoPost(_REMOTE, '/tools/find', { 'Level' : 'Patient', 'Query' : { }})
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 13
diff changeset
1412 self.assertEqual(2, len(a))
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 13
diff changeset
1413
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 13
diff changeset
1414 a = DoPost(_REMOTE, '/tools/find', { 'Level' : 'Study', 'Query' : { }})
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 13
diff changeset
1415 self.assertEqual(2, len(a))
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 13
diff changeset
1416
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 13
diff changeset
1417 a = DoPost(_REMOTE, '/tools/find', { 'Level' : 'Series', 'Query' : { }})
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 13
diff changeset
1418 self.assertEqual(4, len(a))
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 13
diff changeset
1419
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 13
diff changeset
1420 a = DoPost(_REMOTE, '/tools/find', { 'Level' : 'Instance', 'Query' : { }})
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 13
diff changeset
1421 self.assertEqual(8, len(a))
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 13
diff changeset
1422
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 13
diff changeset
1423
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 13
diff changeset
1424 def test_rest_query_retrieve(self):
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 13
diff changeset
1425 self.assertEqual(0, len(DoGet(_REMOTE, '/patients')))
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 13
diff changeset
1426
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 13
diff changeset
1427 # Upload 8 instances
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 13
diff changeset
1428 for i in range(2):
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 13
diff changeset
1429 UploadInstance(_REMOTE, 'Brainix/Flair/IM-0001-000%d.dcm' % (i + 1))
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 13
diff changeset
1430 UploadInstance(_REMOTE, 'Brainix/Epi/IM-0001-000%d.dcm' % (i + 1))
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 13
diff changeset
1431 UploadInstance(_REMOTE, 'Knee/T1/IM-0001-000%d.dcm' % (i + 1))
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 13
diff changeset
1432 UploadInstance(_REMOTE, 'Knee/T2/IM-0001-000%d.dcm' % (i + 1))
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 13
diff changeset
1433
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 13
diff changeset
1434 self.assertEqual(2, len(DoGet(_REMOTE, '/patients')))
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 13
diff changeset
1435 for p in DoGet(_REMOTE, '/patients'):
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 13
diff changeset
1436 DoPost(_REMOTE, '/modalities/orthanctest/store', p)
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 13
diff changeset
1437 DoDelete(_REMOTE, '/patients/%s' % p)
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 13
diff changeset
1438
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 13
diff changeset
1439 for q in DoGet(_REMOTE, '/queries'):
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 13
diff changeset
1440 DoDelete(_REMOTE, '/queries/%s' % q)
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 13
diff changeset
1441
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 13
diff changeset
1442 self.assertEqual(0, len(DoGet(_REMOTE, '/patients')))
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 13
diff changeset
1443 self.assertEqual(0, len(DoGet(_REMOTE, '/queries')))
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 13
diff changeset
1444 a = DoPost(_REMOTE, '/modalities/orthanctest/query', { 'Level' : 'Series',
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 13
diff changeset
1445 'Query' : { 'PatientName' : '*NE*' }})['ID']
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 13
diff changeset
1446 self.assertEqual(1, len(DoGet(_REMOTE, '/queries')))
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 13
diff changeset
1447
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 13
diff changeset
1448 b = DoGet(_REMOTE, '/queries/%s' % a)
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 13
diff changeset
1449 self.assertTrue('answers' in b)
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 13
diff changeset
1450 self.assertTrue('level' in b)
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 13
diff changeset
1451 self.assertTrue('modality' in b)
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 13
diff changeset
1452 self.assertTrue('query' in b)
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 13
diff changeset
1453 self.assertTrue('retrieve' in b)
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 13
diff changeset
1454 self.assertEqual('Series', DoGet(_REMOTE, '/queries/%s/level' % a))
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 13
diff changeset
1455 self.assertEqual('orthanctest', DoGet(_REMOTE, '/queries/%s/modality' % a))
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 13
diff changeset
1456
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 13
diff changeset
1457 q = DoGet(_REMOTE, '/queries/%s/query?simplify' % a)
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 13
diff changeset
1458 self.assertEqual(1, len(q))
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 13
diff changeset
1459 self.assertTrue('PatientName' in q)
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 13
diff changeset
1460 self.assertEqual('*NE*', q['PatientName'])
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 13
diff changeset
1461
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 13
diff changeset
1462 self.assertEqual(2, len(DoGet(_REMOTE, '/queries/%s/answers' % a)))
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 13
diff changeset
1463
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 13
diff changeset
1464 s = DoGet(_REMOTE, '/queries/%s/answers/0' % a)
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 13
diff changeset
1465 self.assertTrue('content' in s)
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 13
diff changeset
1466 self.assertTrue('retrieve' in s)
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 13
diff changeset
1467
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 13
diff changeset
1468 s = DoGet(_REMOTE, '/queries/%s/answers/0/content?simplify' % a)
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 13
diff changeset
1469 self.assertEqual('887', s['PatientID'])
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 13
diff changeset
1470 self.assertEqual('2.16.840.1.113669.632.20.121711.10000160881', s['StudyInstanceUID'])
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 13
diff changeset
1471
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 13
diff changeset
1472 self.assertEqual(0, len(DoGet(_REMOTE, '/patients')))
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 13
diff changeset
1473 DoPost(_REMOTE, '/queries/%s/answers/0/retrieve' % a, 'ORTHANC')
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 13
diff changeset
1474 self.assertEqual(1, len(DoGet(_REMOTE, '/patients')))
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 13
diff changeset
1475 self.assertEqual(1, len(DoGet(_REMOTE, '/studies')))
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 13
diff changeset
1476 self.assertEqual(1, len(DoGet(_REMOTE, '/series')))
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 13
diff changeset
1477 self.assertEqual(2, len(DoGet(_REMOTE, '/instances')))
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 13
diff changeset
1478
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 13
diff changeset
1479 DoPost(_REMOTE, '/queries/%s/answers/1/retrieve' % a, 'ORTHANC')
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 13
diff changeset
1480 self.assertEqual(1, len(DoGet(_REMOTE, '/patients')))
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 13
diff changeset
1481 self.assertEqual(1, len(DoGet(_REMOTE, '/studies')))
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 13
diff changeset
1482 self.assertEqual(2, len(DoGet(_REMOTE, '/series')))
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 13
diff changeset
1483 self.assertEqual(4, len(DoGet(_REMOTE, '/instances')))
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 13
diff changeset
1484
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 13
diff changeset
1485 DoDelete(_REMOTE, '/queries/%s' % a)
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 13
diff changeset
1486 self.assertEqual(0, len(DoGet(_REMOTE, '/queries')))
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 13
diff changeset
1487
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 13
diff changeset
1488
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 13
diff changeset
1489 def test_parent(self):
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 13
diff changeset
1490 u = UploadInstance(_REMOTE, 'DummyCT.dcm')['ID']
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 13
diff changeset
1491 patient = '6816cb19-844d5aee-85245eba-28e841e6-2414fae2'
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 13
diff changeset
1492 study = 'b9c08539-26f93bde-c81ab0d7-bffaf2cb-a4d0bdd0'
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 13
diff changeset
1493 series = 'f2635388-f01d497a-15f7c06b-ad7dba06-c4c599fe'
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 13
diff changeset
1494 instance = '66a662ce-7430e543-bad44d47-0dc5a943-ec7a538d'
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 13
diff changeset
1495 self.assertEqual(instance, u);
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 13
diff changeset
1496
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 13
diff changeset
1497 a = DoGet(_REMOTE, '/studies/%s/patient' % study)
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 13
diff changeset
1498 self.assertEqual('Patient', a['Type'])
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 13
diff changeset
1499 self.assertEqual(patient, a['ID'])
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 13
diff changeset
1500
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 13
diff changeset
1501 a = DoGet(_REMOTE, '/series/%s/patient' % series)
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 13
diff changeset
1502 self.assertEqual('Patient', a['Type'])
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 13
diff changeset
1503 self.assertEqual(patient, a['ID'])
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 13
diff changeset
1504
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 13
diff changeset
1505 a = DoGet(_REMOTE, '/series/%s/study' % series)
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 13
diff changeset
1506 self.assertEqual('Study', a['Type'])
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 13
diff changeset
1507 self.assertEqual(study, a['ID'])
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 13
diff changeset
1508
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 13
diff changeset
1509 a = DoGet(_REMOTE, '/instances/%s/patient' % instance)
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 13
diff changeset
1510 self.assertEqual('Patient', a['Type'])
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 13
diff changeset
1511 self.assertEqual(patient, a['ID'])
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 13
diff changeset
1512
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 13
diff changeset
1513 a = DoGet(_REMOTE, '/instances/%s/study' % instance)
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 13
diff changeset
1514 self.assertEqual('Study', a['Type'])
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 13
diff changeset
1515 self.assertEqual(study, a['ID'])
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 13
diff changeset
1516
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 13
diff changeset
1517 a = DoGet(_REMOTE, '/instances/%s/series' % instance)
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 13
diff changeset
1518 self.assertEqual('Series', a['Type'])
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 13
diff changeset
1519 self.assertEqual(series, a['ID'])
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 13
diff changeset
1520
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 13
diff changeset
1521
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 13
diff changeset
1522 def test_shanon(self):
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 13
diff changeset
1523 def Anonymize(instance, replacements = {}):
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 13
diff changeset
1524 return DoPost(_REMOTE, '/instances/%s/anonymize' % instance, { 'Replace' : replacements }, 'application/json')
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 13
diff changeset
1525
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 13
diff changeset
1526 self.assertEqual(0, len(DoGet(_REMOTE, '/instances')))
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 13
diff changeset
1527 u = UploadInstance(_REMOTE, 'DummyCT.dcm')['ID']
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 13
diff changeset
1528 self.assertEqual(1, len(DoGet(_REMOTE, '/instances')))
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 13
diff changeset
1529
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 13
diff changeset
1530 tags = [ 'PatientID', 'StudyInstanceUID', 'SeriesInstanceUID', 'SOPInstanceUID', 'DeidentificationMethod' ]
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 13
diff changeset
1531 ids = [ 'ozp00SjY2xG',
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 13
diff changeset
1532 '1.2.840.113619.2.176.2025.1499492.7391.1171285944.390',
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 13
diff changeset
1533 '1.2.840.113619.2.176.2025.1499492.7391.1171285944.394',
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 13
diff changeset
1534 '1.2.840.113619.2.176.2025.1499492.7040.1171286242.109' ]
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 13
diff changeset
1535
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 13
diff changeset
1536 a = ExtractDicomTags(Anonymize(u), tags)
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 13
diff changeset
1537 for i in range(4):
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 13
diff changeset
1538 self.assertNotEqual(ids[i], a[i])
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 13
diff changeset
1539 self.assertTrue(a[4].startswith('Orthanc'))
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 13
diff changeset
1540
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 13
diff changeset
1541 a = ExtractDicomTags(Anonymize(u, { 'PatientName' : 'toto' }), tags)
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 13
diff changeset
1542 for i in range(4):
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 13
diff changeset
1543 self.assertNotEqual(ids[i], a[i])
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 13
diff changeset
1544 self.assertFalse(a[4].startswith('Orthanc'))
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 13
diff changeset
1545
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 13
diff changeset
1546 a = ExtractDicomTags(Anonymize(u, { 'SOPInstanceUID' : 'instance' }), tags)
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 13
diff changeset
1547 self.assertEqual('instance', a[3])
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 13
diff changeset
1548 self.assertFalse(a[4].startswith('Orthanc'))
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 13
diff changeset
1549
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 13
diff changeset
1550 a = ExtractDicomTags(Anonymize(u, { 'SeriesInstanceUID' : 'series' }), tags)
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 13
diff changeset
1551 self.assertEqual('series', a[2])
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 13
diff changeset
1552 self.assertFalse(a[4].startswith('Orthanc'))
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 13
diff changeset
1553
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 13
diff changeset
1554 a = ExtractDicomTags(Anonymize(u, { 'StudyInstanceUID' : 'study' }), tags)
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 13
diff changeset
1555 self.assertEqual('study', a[1])
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 13
diff changeset
1556 self.assertFalse(a[4].startswith('Orthanc'))
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 13
diff changeset
1557
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 13
diff changeset
1558 a = ExtractDicomTags(Anonymize(u, { 'PatientID' : 'patient' }), tags)
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 13
diff changeset
1559 self.assertEqual('patient', a[0])
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 13
diff changeset
1560 self.assertFalse(a[4].startswith('Orthanc'))
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 13
diff changeset
1561
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 13
diff changeset
1562 a = ExtractDicomTags(Anonymize(u, { 'PatientID' : 'patient',
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 13
diff changeset
1563 'StudyInstanceUID' : 'study',
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 13
diff changeset
1564 'SeriesInstanceUID' : 'series',
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 13
diff changeset
1565 'SOPInstanceUID' : 'instance' }), tags)
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 13
diff changeset
1566 self.assertEqual('patient', a[0])
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 13
diff changeset
1567 self.assertFalse(a[4].startswith('Orthanc'))
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 13
diff changeset
1568
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 13
diff changeset
1569 self.assertEqual(1, len(DoGet(_REMOTE, '/instances')))
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 13
diff changeset
1570
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 13
diff changeset
1571
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 13
diff changeset
1572 def test_shanon_2(self):
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 13
diff changeset
1573 def Modify(instance, replacements = {}):
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 13
diff changeset
1574 return DoPost(_REMOTE, '/instances/%s/modify' % instance, { 'Replace' : replacements }, 'application/json')
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 13
diff changeset
1575
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 13
diff changeset
1576 self.assertEqual(0, len(DoGet(_REMOTE, '/instances')))
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 13
diff changeset
1577 u = UploadInstance(_REMOTE, 'DummyCT.dcm')['ID']
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 13
diff changeset
1578 self.assertEqual(1, len(DoGet(_REMOTE, '/instances')))
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 13
diff changeset
1579
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 13
diff changeset
1580 tags = [ 'PatientID', 'StudyInstanceUID', 'SeriesInstanceUID', 'SOPInstanceUID', 'DeidentificationMethod' ]
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 13
diff changeset
1581 ids = [ 'ozp00SjY2xG',
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 13
diff changeset
1582 '1.2.840.113619.2.176.2025.1499492.7391.1171285944.390',
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 13
diff changeset
1583 '1.2.840.113619.2.176.2025.1499492.7391.1171285944.394',
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 13
diff changeset
1584 '1.2.840.113619.2.176.2025.1499492.7040.1171286242.109' ]
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 13
diff changeset
1585
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 13
diff changeset
1586 a = ExtractDicomTags(Modify(u), tags)
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 13
diff changeset
1587 self.assertEqual(ids[0], a[0])
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 13
diff changeset
1588 self.assertEqual(ids[1], a[1])
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 13
diff changeset
1589 self.assertEqual(ids[2], a[2])
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 13
diff changeset
1590 self.assertNotEqual(ids[3], a[3])
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 13
diff changeset
1591 self.assertEqual(0, len(a[4]))
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 13
diff changeset
1592
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 13
diff changeset
1593 a = ExtractDicomTags(Modify(u, { 'SOPInstanceUID' : 'instance' }), tags)
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 13
diff changeset
1594 self.assertEqual(ids[0], a[0])
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 13
diff changeset
1595 self.assertEqual(ids[1], a[1])
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 13
diff changeset
1596 self.assertEqual(ids[2], a[2])
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 13
diff changeset
1597 self.assertEqual('instance', a[3])
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 13
diff changeset
1598
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 13
diff changeset
1599 a = ExtractDicomTags(Modify(u, { 'SeriesInstanceUID' : 'series' }), tags)
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 13
diff changeset
1600 self.assertEqual(ids[0], a[0])
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 13
diff changeset
1601 self.assertEqual(ids[1], a[1])
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 13
diff changeset
1602 self.assertEqual('series', a[2])
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 13
diff changeset
1603 self.assertNotEqual(ids[3], a[3])
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 13
diff changeset
1604
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 13
diff changeset
1605 a = ExtractDicomTags(Modify(u, { 'StudyInstanceUID' : 'study' }), tags)
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 13
diff changeset
1606 self.assertEqual(ids[0], a[0])
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 13
diff changeset
1607 self.assertEqual('study', a[1])
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 13
diff changeset
1608 self.assertNotEqual(ids[2], a[2])
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 13
diff changeset
1609 self.assertNotEqual(ids[3], a[3])
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 13
diff changeset
1610
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 13
diff changeset
1611 a = ExtractDicomTags(Modify(u, { 'PatientID' : 'patient' }), tags)
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 13
diff changeset
1612 self.assertEqual('patient', a[0])
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 13
diff changeset
1613 self.assertNotEqual(ids[1], a[1])
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 13
diff changeset
1614 self.assertNotEqual(ids[2], a[2])
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 13
diff changeset
1615 self.assertNotEqual(ids[3], a[3])
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 13
diff changeset
1616
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 13
diff changeset
1617 a = ExtractDicomTags(Modify(u, { 'PatientID' : 'patient',
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 13
diff changeset
1618 'StudyInstanceUID' : 'study',
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 13
diff changeset
1619 'SeriesInstanceUID' : 'series',
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 13
diff changeset
1620 'SOPInstanceUID' : 'instance' }), tags)
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 13
diff changeset
1621 self.assertEqual('patient', a[0])
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 13
diff changeset
1622 self.assertEqual('study', a[1])
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 13
diff changeset
1623 self.assertEqual('series', a[2])
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 13
diff changeset
1624 self.assertEqual('instance', a[3])
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 13
diff changeset
1625
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 13
diff changeset
1626 self.assertEqual(1, len(DoGet(_REMOTE, '/instances')))
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 13
diff changeset
1627
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 13
diff changeset
1628
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 13
diff changeset
1629 def test_instances_tags(self):
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 13
diff changeset
1630 a = UploadInstance(_REMOTE, 'Knee/T1/IM-0001-0001.dcm')['ID']
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 13
diff changeset
1631 b = UploadInstance(_REMOTE, 'Knee/T2/IM-0001-0001.dcm')['ID']
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 13
diff changeset
1632 #a = UploadInstance(_REMOTE, 'Cardiac/MR.X.1.2.276.0.7230010.3.1.4.2831157719.2256.1336386937.676343')['ID']
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 13
diff changeset
1633 #b = UploadInstance(_REMOTE, 'Cardiac/MR.X.1.2.276.0.7230010.3.1.4.2831157719.2256.1336386925.676329')['ID']
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 13
diff changeset
1634
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 13
diff changeset
1635 i = DoGet(_REMOTE, '/patients/%s/instances-tags?simplify' % DoGet(_REMOTE, '/patients')[0])
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 13
diff changeset
1636 self.assertEqual(2, len(i))
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 13
diff changeset
1637 self.assertEqual('887', i[i.keys()[0]]['PatientID'])
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 13
diff changeset
1638 self.assertEqual('887', i[i.keys()[1]]['PatientID'])
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 13
diff changeset
1639
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 13
diff changeset
1640 i = DoGet(_REMOTE, '/patients/%s/instances-tags?simplify' % DoGet(_REMOTE, '/studies')[0])
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 13
diff changeset
1641 self.assertEqual(2, len(i))
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 13
diff changeset
1642 self.assertEqual('887', i[i.keys()[0]]['PatientID'])
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 13
diff changeset
1643 self.assertEqual('887', i[i.keys()[1]]['PatientID'])
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 13
diff changeset
1644
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 13
diff changeset
1645 self.assertEqual(2, len(DoGet(_REMOTE, '/series')))
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 13
diff changeset
1646 i = DoGet(_REMOTE, '/patients/%s/instances-tags?simplify' % DoGet(_REMOTE, '/series')[0])
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 13
diff changeset
1647 self.assertEqual(1, len(i))
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 13
diff changeset
1648 self.assertEqual('887', i[i.keys()[0]]['PatientID'])
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 13
diff changeset
1649
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 13
diff changeset
1650 i = DoGet(_REMOTE, '/patients/%s/instances-tags?simplify' % DoGet(_REMOTE, '/series')[1])
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 13
diff changeset
1651 self.assertEqual(1, len(i))
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 13
diff changeset
1652 self.assertEqual('887', i[i.keys()[0]]['PatientID'])
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 13
diff changeset
1653
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 13
diff changeset
1654
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 13
diff changeset
1655 def test_lookup(self):
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 13
diff changeset
1656 a = DoPost(_REMOTE, '/tools/lookup', 'ozp00SjY2xG')
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 13
diff changeset
1657 self.assertEqual(0, len(a))
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 13
diff changeset
1658
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 13
diff changeset
1659 UploadInstance(_REMOTE, 'DummyCT.dcm')
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 13
diff changeset
1660
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 13
diff changeset
1661 a = DoPost(_REMOTE, '/tools/lookup', 'ozp00SjY2xG')
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 13
diff changeset
1662 self.assertEqual(1, len(a))
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 13
diff changeset
1663 self.assertEqual('Patient', a[0]['Type'])
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 13
diff changeset
1664 self.assertEqual('6816cb19-844d5aee-85245eba-28e841e6-2414fae2', a[0]['ID'])
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 13
diff changeset
1665 self.assertEqual('/patients/%s' % a[0]['ID'], a[0]['Path'])
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 13
diff changeset
1666
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 13
diff changeset
1667 a = DoPost(_REMOTE, '/tools/lookup', '1.2.840.113619.2.176.2025.1499492.7391.1171285944.390')
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 13
diff changeset
1668 self.assertEqual(1, len(a))
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 13
diff changeset
1669 self.assertEqual('Study', a[0]['Type'])
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 13
diff changeset
1670 self.assertEqual('b9c08539-26f93bde-c81ab0d7-bffaf2cb-a4d0bdd0', a[0]['ID'])
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 13
diff changeset
1671 self.assertEqual('/studies/%s' % a[0]['ID'], a[0]['Path'])
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 13
diff changeset
1672
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 13
diff changeset
1673 a = DoPost(_REMOTE, '/tools/lookup', '1.2.840.113619.2.176.2025.1499492.7391.1171285944.394')
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 13
diff changeset
1674 self.assertEqual(1, len(a))
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 13
diff changeset
1675 self.assertEqual('Series', a[0]['Type'])
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 13
diff changeset
1676 self.assertEqual('f2635388-f01d497a-15f7c06b-ad7dba06-c4c599fe', a[0]['ID'])
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 13
diff changeset
1677 self.assertEqual('/series/%s' % a[0]['ID'], a[0]['Path'])
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 13
diff changeset
1678
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 13
diff changeset
1679 a = DoPost(_REMOTE, '/tools/lookup', '1.2.840.113619.2.176.2025.1499492.7040.1171286242.109')
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 13
diff changeset
1680 self.assertEqual(1, len(a))
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 13
diff changeset
1681 self.assertEqual('Instance', a[0]['Type'])
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 13
diff changeset
1682 self.assertEqual('66a662ce-7430e543-bad44d47-0dc5a943-ec7a538d', a[0]['ID'])
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 13
diff changeset
1683 self.assertEqual('/instances/%s' % a[0]['ID'], a[0]['Path'])
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 13
diff changeset
1684
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 13
diff changeset
1685 DropOrthanc(_REMOTE)
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 13
diff changeset
1686 a = DoPost(_REMOTE, '/tools/lookup', '3113719P')
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 13
diff changeset
1687 self.assertEqual(0, len(a))
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 13
diff changeset
1688
15
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 14
diff changeset
1689
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 14
diff changeset
1690 def test_autorouting(self):
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 14
diff changeset
1691 knee1 = 'Knee/T1/IM-0001-0001.dcm'
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 14
diff changeset
1692 knee2 = 'Knee/T2/IM-0001-0002.dcm'
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 14
diff changeset
1693 other = 'Brainix/Flair/IM-0001-0001.dcm'
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 14
diff changeset
1694
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 14
diff changeset
1695 # Check that this version is >= 0.8.0
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 14
diff changeset
1696 self.assertTrue(IsDefinedInLua(_REMOTE, '_InitializeJob'))
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 14
diff changeset
1697 self.assertTrue('orthanctest' in DoGet(_REMOTE, '/modalities'))
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 14
diff changeset
1698
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 14
diff changeset
1699 UploadInstance(_REMOTE, knee1)
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 14
diff changeset
1700 self.assertEqual(0, len(DoGet(_LOCAL, '/instances')))
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 14
diff changeset
1701
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 14
diff changeset
1702 DropOrthanc(_REMOTE)
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 14
diff changeset
1703 DropOrthanc(_LOCAL)
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 14
diff changeset
1704 InstallLuaScript('Lua/Autorouting.lua')
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 14
diff changeset
1705 UploadInstance(_REMOTE, knee1)
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 14
diff changeset
1706 UploadInstance(_REMOTE, knee2)
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 14
diff changeset
1707 UploadInstance(_REMOTE, other)
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 14
diff changeset
1708 WaitEmpty(_REMOTE)
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 14
diff changeset
1709 UninstallLuaCallbacks()
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 14
diff changeset
1710 self.assertEqual(3, len(DoGet(_LOCAL, '/instances')))
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 14
diff changeset
1711
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 14
diff changeset
1712 DropOrthanc(_REMOTE)
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 14
diff changeset
1713 DropOrthanc(_LOCAL)
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 14
diff changeset
1714 InstallLuaScript('Lua/AutoroutingConditional.lua')
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 14
diff changeset
1715 UploadInstance(_REMOTE, knee1)
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 14
diff changeset
1716 UploadInstance(_REMOTE, knee2)
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 14
diff changeset
1717 UploadInstance(_REMOTE, other)
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 14
diff changeset
1718 WaitEmpty(_REMOTE)
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 14
diff changeset
1719 UninstallLuaCallbacks()
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 14
diff changeset
1720 self.assertEqual(2, len(DoGet(_LOCAL, '/instances')))
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 14
diff changeset
1721
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 14
diff changeset
1722 DropOrthanc(_REMOTE)
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 14
diff changeset
1723 DropOrthanc(_LOCAL)
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 14
diff changeset
1724 InstallLuaScript('Lua/AutoroutingModification.lua')
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 14
diff changeset
1725 UploadInstance(_REMOTE, knee1)
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 14
diff changeset
1726 WaitEmpty(_REMOTE)
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 14
diff changeset
1727 UninstallLuaCallbacks()
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 14
diff changeset
1728 i = DoGet(_LOCAL, '/instances')
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 14
diff changeset
1729 self.assertEqual(1, len(i))
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 14
diff changeset
1730
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 14
diff changeset
1731 with tempfile.NamedTemporaryFile(delete = True) as f:
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 14
diff changeset
1732 f.write(DoGet(_LOCAL, '/instances/%s/file' % i[0]))
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 14
diff changeset
1733 f.flush()
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 14
diff changeset
1734 routed = subprocess.check_output([ 'dcm2xml', f.name ])
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 14
diff changeset
1735 self.assertEqual('My Medical Device', re.search('"StationName">(.*?)<', routed).group(1).strip())
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 14
diff changeset
1736 self.assertEqual(None, re.search('"MilitaryRank"', routed))
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 14
diff changeset
1737 self.assertEqual(None, re.search('"0051,0010"', routed)) # A private tag
17
7c8500991a12 karsten
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 15
diff changeset
1738
7c8500991a12 karsten
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 15
diff changeset
1739
7c8500991a12 karsten
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 15
diff changeset
1740 def test_storescu_rf(self):
7c8500991a12 karsten
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 15
diff changeset
1741 i = UploadInstance(_REMOTE, 'KarstenHilbertRF.dcm')['ID']
7c8500991a12 karsten
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 15
diff changeset
1742 self.assertEqual(0, len(DoGet(_LOCAL, '/instances')))
7c8500991a12 karsten
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 15
diff changeset
1743 j = DoPost(_REMOTE, '/modalities/orthanctest/store', str(i), 'text/plain')
7c8500991a12 karsten
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 15
diff changeset
1744 self.assertEqual(1, len(DoGet(_LOCAL, '/instances')))
18
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 17
diff changeset
1745
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 17
diff changeset
1746
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 17
diff changeset
1747 def test_anonymize_instance(self):
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 17
diff changeset
1748 def AnonymizeAndUpload(instanceId, parameters):
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 17
diff changeset
1749 return DoPost(_REMOTE, '/instances', DoPost(_REMOTE, '/instances/%s/anonymize' % instanceId, parameters,
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 17
diff changeset
1750 'application/json'), 'application/dicom')['ID']
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 17
diff changeset
1751
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 17
diff changeset
1752 def ModifyAndUpload(instanceId, parameters):
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 17
diff changeset
1753 return DoPost(_REMOTE, '/instances', DoPost(_REMOTE, '/instances/%s/modify' % instanceId, parameters,
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 17
diff changeset
1754 'application/json'), 'application/dicom')['ID']
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 17
diff changeset
1755
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 17
diff changeset
1756 a = UploadInstance(_REMOTE, 'PrivateMDNTags.dcm')['ID']
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 17
diff changeset
1757 s1 = DoGet(_REMOTE, '/instances/%s/content/PatientName' % a)
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 17
diff changeset
1758 s2 = DoGet(_REMOTE, '/instances/%s/content/00e1-10c2' % a) # Some private tag
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 17
diff changeset
1759 s3 = DoGet(_REMOTE, '/instances/%s/content/StudyDescription' % a)
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 17
diff changeset
1760 s4 = DoGet(_REMOTE, '/instances/%s/content/SeriesDescription' % a)
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 17
diff changeset
1761 s5 = DoGet(_REMOTE, '/instances/%s/content/InstitutionName' % a)
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 17
diff changeset
1762
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 17
diff changeset
1763 b = AnonymizeAndUpload(a, '{}')
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 17
diff changeset
1764 self.assertNotEqual(s1, DoGet(_REMOTE, '/instances/%s/content/PatientName' % b))
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 17
diff changeset
1765 self.assertRaises(Exception, lambda: DoGet(_REMOTE, '/instances/%s/content/00e1-10c2' % b))
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 17
diff changeset
1766
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 17
diff changeset
1767 # Keep private tag (only OK since Orthanc 0.8.0)
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 17
diff changeset
1768 b = AnonymizeAndUpload(a, '{"Keep":["00e1-10c2"]}')
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 17
diff changeset
1769 self.assertNotEqual(s1, DoGet(_REMOTE, '/instances/%s/content/PatientName' % b))
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 17
diff changeset
1770 self.assertEqual(s2, DoGet(_REMOTE, '/instances/%s/content/00e1-10c2' % b))
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 17
diff changeset
1771
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 17
diff changeset
1772 b = AnonymizeAndUpload(a, '{"Keep":["00e1,10c2","PatientName"]}')
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 17
diff changeset
1773 self.assertEqual(s1, DoGet(_REMOTE, '/instances/%s/content/PatientName' % b))
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 17
diff changeset
1774 self.assertEqual(s2, DoGet(_REMOTE, '/instances/%s/content/00e1-10c2' % b))
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 17
diff changeset
1775
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 17
diff changeset
1776 b = AnonymizeAndUpload(a, '{"Keep":["PatientName"],"Replace":{"00e1,10c2":"Hello"}}')
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 17
diff changeset
1777 self.assertEqual(s1, DoGet(_REMOTE, '/instances/%s/content/PatientName' % b))
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 17
diff changeset
1778 self.assertTrue(DoGet(_REMOTE, '/instances/%s/content/00e1-10c2' % b).startswith('Hello'))
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 17
diff changeset
1779
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 17
diff changeset
1780 # Examples from the Wiki
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 17
diff changeset
1781 b = AnonymizeAndUpload(a, '{"Replace":{"PatientName":"hello","0010-0020":"world"},"Keep":["StudyDescription", "SeriesDescription"],"KeepPrivateTags": null}')
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 17
diff changeset
1782 self.assertEqual('hello', DoGet(_REMOTE, '/instances/%s/content/0010-0010' % b).strip())
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 17
diff changeset
1783 self.assertEqual('world', DoGet(_REMOTE, '/instances/%s/content/PatientID' % b).strip())
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 17
diff changeset
1784 self.assertEqual(s3, DoGet(_REMOTE, '/instances/%s/content/0008,1030' % b))
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 17
diff changeset
1785 self.assertEqual(s4, DoGet(_REMOTE, '/instances/%s/content/0008,103e' % b))
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 17
diff changeset
1786 self.assertEqual(s4, DoGet(_REMOTE, '/instances/%s/content/0008-103E' % b))
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 17
diff changeset
1787 self.assertEqual(s2, DoGet(_REMOTE, '/instances/%s/content/00e1-10c2' % b))
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 17
diff changeset
1788 DoGet(_REMOTE, '/instances/%s/content/InstitutionName' % a)
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 17
diff changeset
1789 self.assertRaises(Exception, lambda: DoGet(_REMOTE, '/instances/%s/content/InstitutionName' % b))
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 17
diff changeset
1790
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 17
diff changeset
1791 b = ModifyAndUpload(a, '{"Replace":{"PatientName":"hello","PatientID":"world"},"Remove":["InstitutionName"],"RemovePrivateTags": null}')
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 17
diff changeset
1792 self.assertEqual('hello', DoGet(_REMOTE, '/instances/%s/content/0010-0010' % b).strip())
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 17
diff changeset
1793 self.assertEqual('world', DoGet(_REMOTE, '/instances/%s/content/PatientID' % b).strip())
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 17
diff changeset
1794 self.assertEqual(s3, DoGet(_REMOTE, '/instances/%s/content/0008,1030' % b))
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 17
diff changeset
1795 self.assertEqual(s4, DoGet(_REMOTE, '/instances/%s/content/0008,103e' % b))
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 17
diff changeset
1796 self.assertRaises(Exception, lambda: DoGet(_REMOTE, '/instances/%s/content/00e1-10c2' % b))
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 17
diff changeset
1797 self.assertRaises(Exception, lambda: DoGet(_REMOTE, '/instances/%s/content/InstitutionName' % b))
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 17
diff changeset
1798
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 17
diff changeset
1799 b = ModifyAndUpload(a, '{"Replace":{"PatientName":"hello","PatientID":"world"}}')
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 17
diff changeset
1800 self.assertEqual('hello', DoGet(_REMOTE, '/instances/%s/content/0010-0010' % b).strip())
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 17
diff changeset
1801 self.assertEqual('world', DoGet(_REMOTE, '/instances/%s/content/PatientID' % b).strip())
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 17
diff changeset
1802 self.assertEqual(s2, DoGet(_REMOTE, '/instances/%s/content/00e1,10c2' % b))
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 17
diff changeset
1803 self.assertEqual(s3, DoGet(_REMOTE, '/instances/%s/content/0008,1030' % b))
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 17
diff changeset
1804 self.assertEqual(s4, DoGet(_REMOTE, '/instances/%s/content/0008-103E' % b))
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 17
diff changeset
1805 self.assertEqual(s5, DoGet(_REMOTE, '/instances/%s/content/InstitutionName' % b))
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 17
diff changeset
1806
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 17
diff changeset
1807
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 17
diff changeset
1808 # Test modify non-existing
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 17
diff changeset
1809 i = DoPost(_REMOTE, '/tools/create-dicom',
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 17
diff changeset
1810 json.dumps({
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 17
diff changeset
1811 'PatientName' : 'Jodogne',
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 17
diff changeset
1812 'Modality' : 'CT',
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 17
diff changeset
1813 }))['ID']
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 17
diff changeset
1814
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 17
diff changeset
1815 self.assertEqual('Jodogne', DoGet(_REMOTE, '/instances/%s/content/PatientName' % i).strip())
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 17
diff changeset
1816 self.assertRaises(Exception, lambda: DoGet(_REMOTE, '/instances/%s/content/StudyDescription' % i))
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 17
diff changeset
1817 self.assertEqual('CT', DoGet(_REMOTE, '/instances/%s/content/Modality' % i).strip())
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 17
diff changeset
1818
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 17
diff changeset
1819 b = ModifyAndUpload(i, '{"Replace":{"StudyDescription":"hello","Modality":"world"}}')
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 17
diff changeset
1820 self.assertEqual('Jodogne', DoGet(_REMOTE, '/instances/%s/content/PatientName' % b).strip())
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 17
diff changeset
1821 self.assertEqual('hello', DoGet(_REMOTE, '/instances/%s/content/StudyDescription' % b).strip())
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 17
diff changeset
1822 self.assertEqual('world', DoGet(_REMOTE, '/instances/%s/content/Modality' % b).strip())
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 17
diff changeset
1823
21
2a29bcff60a7 tests of image decoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 18
diff changeset
1824
2a29bcff60a7 tests of image decoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 18
diff changeset
1825 def test_incoming_jpeg(self):
2a29bcff60a7 tests of image decoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 18
diff changeset
1826 def storescu():
2a29bcff60a7 tests of image decoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 18
diff changeset
1827 with open(os.devnull, 'w') as FNULL:
2a29bcff60a7 tests of image decoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 18
diff changeset
1828 subprocess.check_call([ 'storescu', '-xs',
2a29bcff60a7 tests of image decoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 18
diff changeset
1829 _REMOTE['Server'], str(_REMOTE['DicomPort']),
2a29bcff60a7 tests of image decoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 18
diff changeset
1830 GetDatabasePath('Knix/Loc/IM-0001-0001.dcm') ],
2a29bcff60a7 tests of image decoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 18
diff changeset
1831 stderr = FNULL)
2a29bcff60a7 tests of image decoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 18
diff changeset
1832
2a29bcff60a7 tests of image decoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 18
diff changeset
1833 self.assertEqual(0, len(DoGet(_REMOTE, '/patients')))
2a29bcff60a7 tests of image decoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 18
diff changeset
1834 InstallLuaScript('Lua/TransferSyntaxDisable.lua')
2a29bcff60a7 tests of image decoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 18
diff changeset
1835 self.assertRaises(Exception, storescu)
2a29bcff60a7 tests of image decoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 18
diff changeset
1836 self.assertEqual(0, len(DoGet(_REMOTE, '/patients')))
2a29bcff60a7 tests of image decoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 18
diff changeset
1837 InstallLuaScript('Lua/TransferSyntaxEnable.lua')
2a29bcff60a7 tests of image decoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 18
diff changeset
1838 storescu()
2a29bcff60a7 tests of image decoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 18
diff changeset
1839 self.assertEqual(1, len(DoGet(_REMOTE, '/patients')))
2a29bcff60a7 tests of image decoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 18
diff changeset
1840
2a29bcff60a7 tests of image decoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 18
diff changeset
1841
2a29bcff60a7 tests of image decoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 18
diff changeset
1842 def test_storescu_jpeg(self):
2a29bcff60a7 tests of image decoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 18
diff changeset
1843 self.assertEqual(0, len(DoGet(_REMOTE, '/exports')['Exports']))
2a29bcff60a7 tests of image decoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 18
diff changeset
1844
2a29bcff60a7 tests of image decoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 18
diff changeset
1845 knixStudy = 'b9c08539-26f93bde-c81ab0d7-bffaf2cb-a4d0bdd0'
2a29bcff60a7 tests of image decoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 18
diff changeset
1846 UploadInstance(_REMOTE, 'Knix/Loc/IM-0001-0001.dcm')
2a29bcff60a7 tests of image decoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 18
diff changeset
1847 UploadInstance(_REMOTE, 'Knix/Loc/IM-0001-0002.dcm')
2a29bcff60a7 tests of image decoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 18
diff changeset
1848 UploadInstance(_REMOTE, 'Knix/Loc/IM-0001-0003.dcm')
2a29bcff60a7 tests of image decoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 18
diff changeset
1849
2a29bcff60a7 tests of image decoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 18
diff changeset
1850 a = UploadInstance(_REMOTE, 'Brainix/Flair/IM-0001-0001.dcm')['ID']
2a29bcff60a7 tests of image decoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 18
diff changeset
1851 b = UploadInstance(_REMOTE, 'ColorTestImageJ.dcm')['ID']
2a29bcff60a7 tests of image decoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 18
diff changeset
1852 self.assertEqual(0, len(DoGet(_LOCAL, '/instances')))
2a29bcff60a7 tests of image decoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 18
diff changeset
1853 DoPost(_REMOTE, '/modalities/orthanctest/store', [ knixStudy, a, b ])
2a29bcff60a7 tests of image decoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 18
diff changeset
1854 self.assertEqual(5, len(DoGet(_LOCAL, '/instances')))
2a29bcff60a7 tests of image decoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 18
diff changeset
1855
2a29bcff60a7 tests of image decoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 18
diff changeset
1856 self.assertEqual(3, len(DoGet(_REMOTE, '/exports')['Exports']))
2a29bcff60a7 tests of image decoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 18
diff changeset
1857
2a29bcff60a7 tests of image decoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 18
diff changeset
1858 DropOrthanc(_REMOTE)
2a29bcff60a7 tests of image decoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 18
diff changeset
1859 self.assertEqual(0, len(DoGet(_REMOTE, '/exports')['Exports']))
2a29bcff60a7 tests of image decoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 18
diff changeset
1860
2a29bcff60a7 tests of image decoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 18
diff changeset
1861
2a29bcff60a7 tests of image decoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 18
diff changeset
1862 def test_pixel_data(self):
2a29bcff60a7 tests of image decoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 18
diff changeset
1863 jpeg = UploadInstance(_REMOTE, 'Knix/Loc/IM-0001-0001.dcm')['ID']
2a29bcff60a7 tests of image decoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 18
diff changeset
1864 color = UploadInstance(_REMOTE, 'ColorTestImageJ.dcm')['ID']
2a29bcff60a7 tests of image decoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 18
diff changeset
1865 phenix = UploadInstance(_REMOTE, 'Phenix/IM-0001-0001.dcm')['ID']
2a29bcff60a7 tests of image decoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 18
diff changeset
1866
2a29bcff60a7 tests of image decoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 18
diff changeset
1867 phenixSize = 358 * 512 * 2
2a29bcff60a7 tests of image decoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 18
diff changeset
1868 colorSize = 1000 * 1000 * 3
2a29bcff60a7 tests of image decoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 18
diff changeset
1869 jpegSize = 51918
2a29bcff60a7 tests of image decoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 18
diff changeset
1870
2a29bcff60a7 tests of image decoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 18
diff changeset
1871 self.assertEqual(1, len(DoGet(_REMOTE, '/instances/%s/content/7fe0-0010' % phenix)))
2a29bcff60a7 tests of image decoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 18
diff changeset
1872 self.assertEqual(1, len(DoGet(_REMOTE, '/instances/%s/content/7fe0-0010' % color)))
2a29bcff60a7 tests of image decoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 18
diff changeset
1873 self.assertEqual(2, len(DoGet(_REMOTE, '/instances/%s/content/7fe0-0010' % jpeg)))
2a29bcff60a7 tests of image decoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 18
diff changeset
1874
2a29bcff60a7 tests of image decoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 18
diff changeset
1875 self.assertEqual(0, len(DoGet(_REMOTE, '/instances/%s/content/7fe0-0010/0' % jpeg)))
2a29bcff60a7 tests of image decoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 18
diff changeset
1876 self.assertEqual(jpegSize, len(DoGet(_REMOTE, '/instances/%s/content/7fe0-0010/1' % jpeg)))
2a29bcff60a7 tests of image decoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 18
diff changeset
1877
2a29bcff60a7 tests of image decoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 18
diff changeset
1878 self.assertEqual(phenixSize, len(DoGet(_REMOTE, '/instances/%s/content/7fe0-0010/0' % phenix)))
2a29bcff60a7 tests of image decoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 18
diff changeset
1879 self.assertEqual(colorSize, len(DoGet(_REMOTE, '/instances/%s/content/7fe0-0010/0' % color)))
2a29bcff60a7 tests of image decoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 18
diff changeset
1880
2a29bcff60a7 tests of image decoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 18
diff changeset
1881
2a29bcff60a7 tests of image decoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 18
diff changeset
1882 def test_decode_brainix(self):
2a29bcff60a7 tests of image decoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 18
diff changeset
1883 brainix = [
2a29bcff60a7 tests of image decoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 18
diff changeset
1884 UploadInstance(_REMOTE, 'Brainix/Epi/IM-0001-0001.dcm')['ID'], # (*)
2a29bcff60a7 tests of image decoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 18
diff changeset
1885 UploadInstance(_REMOTE, 'Formats/JpegLossless.dcm')['ID'], # JPEG-LS, same as (*) (since Orthanc 0.7.6)
2a29bcff60a7 tests of image decoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 18
diff changeset
1886 UploadInstance(_REMOTE, 'Formats/Jpeg.dcm')['ID'], # JPEG, same as (*) (since Orthanc 0.7.6)
2a29bcff60a7 tests of image decoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 18
diff changeset
1887 ]
2a29bcff60a7 tests of image decoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 18
diff changeset
1888 h = '6fb11b932d535c2be04beabd99793ff8'
2a29bcff60a7 tests of image decoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 18
diff changeset
1889 maxValue = 426.0
2a29bcff60a7 tests of image decoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 18
diff changeset
1890
2a29bcff60a7 tests of image decoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 18
diff changeset
1891 truth = Image.open(GetDatabasePath('Formats/Brainix.png'))
2a29bcff60a7 tests of image decoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 18
diff changeset
1892 for i in brainix:
2a29bcff60a7 tests of image decoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 18
diff changeset
1893 self.AssertSameImages(truth.getdata(), '/instances/%s/image-int16' % i)
2a29bcff60a7 tests of image decoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 18
diff changeset
1894 self.AssertSameImages(truth.getdata(), '/instances/%s/image-uint16' % i)
2a29bcff60a7 tests of image decoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 18
diff changeset
1895
2a29bcff60a7 tests of image decoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 18
diff changeset
1896 truth2 = map(lambda x: min(255, x), truth.getdata())
2a29bcff60a7 tests of image decoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 18
diff changeset
1897 for i in brainix:
2a29bcff60a7 tests of image decoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 18
diff changeset
1898 self.AssertSameImages(truth2, '/instances/%s/image-uint8' % i)
2a29bcff60a7 tests of image decoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 18
diff changeset
1899
2a29bcff60a7 tests of image decoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 18
diff changeset
1900 truth2 = map(lambda x: x * 255.0 / maxValue, truth.getdata())
2a29bcff60a7 tests of image decoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 18
diff changeset
1901 for i in brainix:
2a29bcff60a7 tests of image decoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 18
diff changeset
1902 self.AssertSameImages(truth2, '/instances/%s/preview' % i)
2a29bcff60a7 tests of image decoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 18
diff changeset
1903
2a29bcff60a7 tests of image decoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 18
diff changeset
1904 for i in brainix:
2a29bcff60a7 tests of image decoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 18
diff changeset
1905 self.assertEqual(h, ComputeMD5(DoGet(_REMOTE, '/instances/%s/matlab' % i)))
2a29bcff60a7 tests of image decoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 18
diff changeset
1906
2a29bcff60a7 tests of image decoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 18
diff changeset
1907
2a29bcff60a7 tests of image decoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 18
diff changeset
1908 def test_decode_color(self):
2a29bcff60a7 tests of image decoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 18
diff changeset
1909 imagej = UploadInstance(_REMOTE, 'ColorTestImageJ.dcm')['ID']
2a29bcff60a7 tests of image decoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 18
diff changeset
1910 color = UploadInstance(_REMOTE, 'ColorTestMalaterre.dcm')['ID']
2a29bcff60a7 tests of image decoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 18
diff changeset
1911
2a29bcff60a7 tests of image decoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 18
diff changeset
1912 for i in [ imagej, color ]:
2a29bcff60a7 tests of image decoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 18
diff changeset
1913 for j in [ 'image-uint8', 'image-uint16', 'image-int16' ]:
2a29bcff60a7 tests of image decoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 18
diff changeset
1914 self.assertRaises(Exception, lambda: DoGet(_REMOTE, '/instances/%s/%s' % (i, j)))
2a29bcff60a7 tests of image decoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 18
diff changeset
1915
2a29bcff60a7 tests of image decoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 18
diff changeset
1916 self.assertEqual('c14c687f7a1ea9fe022479fc87c67274', ComputeMD5(DoGet(_REMOTE, '/instances/%s/preview' % imagej)))
2a29bcff60a7 tests of image decoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 18
diff changeset
1917 self.assertEqual('a87d122918a56f803bcfe9d2586b9125', ComputeMD5(DoGet(_REMOTE, '/instances/%s/preview' % color)))
2a29bcff60a7 tests of image decoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 18
diff changeset
1918
2a29bcff60a7 tests of image decoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 18
diff changeset
1919 self.assertEqual('30cc46bfa7aba77a40e4178f6184c25a', ComputeMD5(DoGet(_REMOTE, '/instances/%s/matlab' % imagej)))
2a29bcff60a7 tests of image decoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 18
diff changeset
1920 self.assertEqual('ff195005cef06b59666fd220a9b4cd9a', ComputeMD5(DoGet(_REMOTE, '/instances/%s/matlab' % color)))
2a29bcff60a7 tests of image decoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 18
diff changeset
1921
2a29bcff60a7 tests of image decoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 18
diff changeset
1922
2a29bcff60a7 tests of image decoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 18
diff changeset
1923 def test_decode_rf(self):
2a29bcff60a7 tests of image decoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 18
diff changeset
1924 rf = UploadInstance(_REMOTE, 'KarstenHilbertRF.dcm')['ID']
2a29bcff60a7 tests of image decoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 18
diff changeset
1925 truth = Image.open(GetDatabasePath('Formats/KarstenHilbertRF.png'))
2a29bcff60a7 tests of image decoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 18
diff changeset
1926
2a29bcff60a7 tests of image decoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 18
diff changeset
1927 self.AssertSameImages(truth.getdata(), '/instances/%s/image-uint8' % rf)
2a29bcff60a7 tests of image decoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 18
diff changeset
1928 self.AssertSameImages(truth.getdata(), '/instances/%s/image-uint16' % rf)
2a29bcff60a7 tests of image decoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 18
diff changeset
1929 self.AssertSameImages(truth.getdata(), '/instances/%s/image-int16' % rf)
2a29bcff60a7 tests of image decoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 18
diff changeset
1930 self.AssertSameImages(truth.getdata(), '/instances/%s/preview' % rf)
2a29bcff60a7 tests of image decoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 18
diff changeset
1931
2a29bcff60a7 tests of image decoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 18
diff changeset
1932 self.assertEqual('42254d70efd2f4a1b8f3455909689f0e', ComputeMD5(DoGet(_REMOTE, '/instances/%s/matlab' % rf)))
2a29bcff60a7 tests of image decoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 18
diff changeset
1933
2a29bcff60a7 tests of image decoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 18
diff changeset
1934
2a29bcff60a7 tests of image decoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 18
diff changeset
1935 def test_decode_multiframe(self):
2a29bcff60a7 tests of image decoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 18
diff changeset
1936 mf = UploadInstance(_REMOTE, 'Multiframe.dcm')['ID']
2a29bcff60a7 tests of image decoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 18
diff changeset
1937
2a29bcff60a7 tests of image decoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 18
diff changeset
1938 # Test the first frame
2a29bcff60a7 tests of image decoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 18
diff changeset
1939 truth = Image.open(GetDatabasePath('Formats/Multiframe0.png'))
2a29bcff60a7 tests of image decoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 18
diff changeset
1940 self.AssertSameImages(truth.getdata(), '/instances/%s/image-uint8' % mf)
2a29bcff60a7 tests of image decoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 18
diff changeset
1941 self.AssertSameImages(truth.getdata(), '/instances/%s/image-uint16' % mf)
2a29bcff60a7 tests of image decoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 18
diff changeset
1942 self.AssertSameImages(truth.getdata(), '/instances/%s/image-int16' % mf)
2a29bcff60a7 tests of image decoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 18
diff changeset
1943 self.AssertSameImages(truth.getdata(), '/instances/%s/preview' % mf)
2a29bcff60a7 tests of image decoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 18
diff changeset
1944 self.assertEqual('9812b99d93bbcd4e7684ded089b5dfb3', ComputeMD5(DoGet(_REMOTE, '/instances/%s/matlab' % mf)))
2a29bcff60a7 tests of image decoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 18
diff changeset
1945
2a29bcff60a7 tests of image decoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 18
diff changeset
1946 self.AssertSameImages(truth.getdata(), '/instances/%s/frames/0/image-uint16' % mf)
2a29bcff60a7 tests of image decoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 18
diff changeset
1947
2a29bcff60a7 tests of image decoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 18
diff changeset
1948 # Test the last frame
2a29bcff60a7 tests of image decoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 18
diff changeset
1949 truth = Image.open(GetDatabasePath('Formats/Multiframe75.png'))
2a29bcff60a7 tests of image decoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 18
diff changeset
1950 self.AssertSameImages(truth.getdata(), '/instances/%s/frames/75/image-uint16' % mf)
2a29bcff60a7 tests of image decoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 18
diff changeset
1951
2a29bcff60a7 tests of image decoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 18
diff changeset
1952
2a29bcff60a7 tests of image decoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 18
diff changeset
1953 def test_decode_signed(self):
2a29bcff60a7 tests of image decoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 18
diff changeset
1954 signed = UploadInstance(_REMOTE, 'SignedCT.dcm')['ID']
2a29bcff60a7 tests of image decoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 18
diff changeset
1955 minValue = -2000
2a29bcff60a7 tests of image decoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 18
diff changeset
1956 maxValue = 4042
2a29bcff60a7 tests of image decoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 18
diff changeset
1957
2a29bcff60a7 tests of image decoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 18
diff changeset
1958 truth = Image.open(GetDatabasePath('Formats/SignedCT.png'))
2a29bcff60a7 tests of image decoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 18
diff changeset
1959 self.AssertSameImages(truth.getdata(), '/instances/%s/image-int16' % signed)
2a29bcff60a7 tests of image decoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 18
diff changeset
1960
2a29bcff60a7 tests of image decoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 18
diff changeset
1961 truth2 = map(lambda x: 0 if x >= 32768 else x, truth.getdata())
2a29bcff60a7 tests of image decoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 18
diff changeset
1962 self.AssertSameImages(truth2, '/instances/%s/image-uint16' % signed)
2a29bcff60a7 tests of image decoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 18
diff changeset
1963
2a29bcff60a7 tests of image decoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 18
diff changeset
1964 truth3 = map(lambda x: 255 if x >= 256 else x, truth2)
2a29bcff60a7 tests of image decoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 18
diff changeset
1965 self.AssertSameImages(truth3, '/instances/%s/image-uint8' % signed)
2a29bcff60a7 tests of image decoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 18
diff changeset
1966
2a29bcff60a7 tests of image decoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 18
diff changeset
1967 tmp = map(lambda x: x - 65536 if x >= 32768 else x, truth.getdata())
2a29bcff60a7 tests of image decoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 18
diff changeset
1968 tmp = map(lambda x: (255.0 * (x - minValue)) / (maxValue - minValue), tmp)
2a29bcff60a7 tests of image decoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 18
diff changeset
1969 self.AssertSameImages(tmp, '/instances/%s/preview' % signed)
2a29bcff60a7 tests of image decoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 18
diff changeset
1970
2a29bcff60a7 tests of image decoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 18
diff changeset
1971 self.assertEqual('b57e6c872a3da50877c7da689b03a444', ComputeMD5(DoGet(_REMOTE, '/instances/%s/matlab' % signed)))
22
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 21
diff changeset
1972
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 21
diff changeset
1973
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 21
diff changeset
1974 def test_issue_32(self):
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 21
diff changeset
1975 f = UploadInstance(_REMOTE, 'Issue32.dcm')['ID']
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 21
diff changeset
1976 tags = DoGet(_REMOTE, '/instances/%s/tags?simplify' % f)
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 21
diff changeset
1977 self.assertEqual(u'Рентгенография', tags['SeriesDescription'])
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 21
diff changeset
1978 self.assertEqual(u'Таз', tags['BodyPartExamined'])
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 21
diff changeset
1979 self.assertEqual(u'Прямая', tags['ViewPosition'])
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 21
diff changeset
1980
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 21
diff changeset
1981
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 21
diff changeset
1982 def test_encodings(self):
23
30ecc857fa07 test latin-2
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 22
diff changeset
1983 # Latin-1 (ISO_IR 100)
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Sebastien Jodogne <s.jodogne@gmail.com>
parents: 21
diff changeset
1984 brainix = UploadInstance(_REMOTE, 'Brainix/Epi/IM-0001-0001.dcm')['ID']
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 21
diff changeset
1985 tags = DoGet(_REMOTE, '/instances/%s/tags?simplify' % brainix)
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 21
diff changeset
1986 self.assertEqual(u'IRM cérébrale, neuro-crâne', tags['StudyDescription'])
23
30ecc857fa07 test latin-2
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 22
diff changeset
1987
30ecc857fa07 test latin-2
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 22
diff changeset
1988 # Latin-2 (ISO_IR 101)
30ecc857fa07 test latin-2
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 22
diff changeset
1989 a = UploadInstance(_REMOTE, 'MarekLatin2.dcm')['ID']
30ecc857fa07 test latin-2
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 22
diff changeset
1990 i = DoGet(_REMOTE, '/instances/%s/simplified-tags' % a)
30ecc857fa07 test latin-2
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 22
diff changeset
1991 # dcm2xml MarekLatin2.dcm | iconv -f latin2 -t utf-8 | xmllint --format -
30ecc857fa07 test latin-2
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 22
diff changeset
1992 self.assertEqual('Imię i Nazwisko osoby opisującej',
30ecc857fa07 test latin-2
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 22
diff changeset
1993 i['ContentSequence'][4]['ConceptNameCodeSequence'][0]['CodeMeaning'].encode('utf-8'))
30ecc857fa07 test latin-2
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 22
diff changeset
1994