Mercurial > hg > orthanc-tests
annotate Tests/Tests.py @ 188:7d585263808b
new test: test_queries_hierarchy
| author | Sebastien Jodogne <s.jodogne@gmail.com> |
|---|---|
| date | Sat, 08 Dec 2018 18:17:10 +0100 |
| parents | 770f6f5aea16 |
| children | 11719f19bd62 |
| rev | line source |
|---|---|
| 22 | 1 #!/usr/bin/env python |
| 2 # -*- coding: utf-8 -*- | |
| 3 | |
| 4 | |
| 3 | 5 # Orthanc - A Lightweight, RESTful DICOM Store |
| 73 | 6 # Copyright (C) 2012-2016 Sebastien Jodogne, Medical Physics |
| 3 | 7 # Department, University Hospital of Liege, Belgium |
|
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8 # Copyright (C) 2017-2018 Osimis S.A., Belgium |
| 3 | 9 # |
| 10 # This program is free software: you can redistribute it and/or | |
| 11 # modify it under the terms of the GNU General Public License as | |
| 12 # published by the Free Software Foundation, either version 3 of the | |
| 13 # License, or (at your option) any later version. | |
| 14 # | |
| 15 # This program is distributed in the hope that it will be useful, but | |
| 16 # WITHOUT ANY WARRANTY; without even the implied warranty of | |
| 17 # MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU | |
| 18 # General Public License for more details. | |
| 19 # | |
| 20 # You should have received a copy of the GNU General Public License | |
| 21 # along with this program. If not, see <http://www.gnu.org/licenses/>. | |
| 22 | |
| 23 | |
| 14 | 24 import tempfile |
| 3 | 25 import unittest |
| 36 | 26 import base64 |
| 3 | 27 |
| 11 | 28 from PIL import ImageChops |
| 3 | 29 from Toolbox import * |
| 13 | 30 from xml.dom import minidom |
| 3 | 31 |
| 32 _LOCAL = None | |
| 33 _REMOTE = None | |
| 34 | |
| 35 | |
| 36 def SetOrthancParameters(local, remote): | |
| 37 global _LOCAL, _REMOTE | |
| 38 _LOCAL = local | |
| 39 _REMOTE = remote | |
| 40 | |
| 41 | |
| 14 | 42 def ExtractDicomTags(rawDicom, tags): |
| 43 with tempfile.NamedTemporaryFile(delete = True) as f: | |
| 44 f.write(rawDicom) | |
| 45 f.flush() | |
| 45 | 46 data = subprocess.check_output([ FindExecutable('dcm2xml'), f.name ]) |
| 14 | 47 |
| 48 result = [] | |
| 49 for tag in tags: | |
| 50 match = re.search('<element[^>]+name="%s">([^>]*)</element>' % tag, data) | |
| 51 if match == None: | |
| 52 result.append('') | |
| 53 else: | |
| 54 result.append(match.group(1)) | |
| 55 | |
| 56 return result | |
| 57 | |
| 58 | |
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59 def CompareLists(a, b): |
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60 if len(a) != len(b): |
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61 return False |
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62 |
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63 for i in range(len(a)): |
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64 d = a[i] - b[i] |
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65 if abs(d) >= 0.51: # Add some tolerance for rounding errors |
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66 return False |
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67 |
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68 return True |
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69 |
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70 |
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71 def CompareTags(a, b, tagsToIgnore): |
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72 for i in tagsToIgnore: |
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73 if i in a: |
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74 del a[i] |
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75 if i in b: |
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76 del b[i] |
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77 |
| 123 | 78 if a.keys() == b.keys(): |
| 79 return True | |
| 80 else: | |
| 81 print('Mismatch in tags: %s' % str(set(a.keys()) ^ set(b.keys()))) | |
| 82 return False | |
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83 |
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84 |
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85 def CallFindScu(args): |
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86 p = subprocess.Popen([ FindExecutable('findscu'), |
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87 '-P', '-aec', _REMOTE['DicomAet'], '-aet', _LOCAL['DicomAet'], |
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88 _REMOTE['Server'], str(_REMOTE['DicomPort']) ] + args, |
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89 stderr=subprocess.PIPE) |
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90 return p.communicate()[1] |
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91 |
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92 |
| 142 | 93 def GetMoveScuCommand(): |
| 94 return [ | |
| 95 FindExecutable('movescu'), | |
| 96 '--move', _LOCAL['DicomAet'], # Target AET (i.e. storescp) | |
| 97 '--call', _REMOTE['DicomAet'], # Called AET (i.e. Orthanc) | |
| 98 '--aetitle', _LOCAL['DicomAet'], # Calling AET (i.e. storescp) | |
| 99 _REMOTE['Server'], | |
| 100 str(_REMOTE['DicomPort']) | |
| 101 ] | |
| 102 | |
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103 def CallMoveScu(args): |
| 142 | 104 subprocess.check_call(GetMoveScuCommand() + args, |
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105 stderr=subprocess.PIPE) |
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106 |
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107 |
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108 |
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109 def GenerateTestSequence(): |
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110 return [ |
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111 { |
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112 'StudyDescription': 'Hello^', |
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113 'ReferencedStudySequence' : [ |
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114 { |
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115 'StudyDescription': 'Toto', |
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116 }, |
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117 { |
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118 'StudyDescription': 'Tata', |
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119 }, |
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120 ] |
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121 }, |
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122 { |
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123 'StudyDescription': 'Sébastien^', |
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124 'StudyDate' : '19700202', |
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125 } |
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126 ] |
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127 |
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128 |
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129 |
| 15 | 130 |
| 3 | 131 class Orthanc(unittest.TestCase): |
| 132 def setUp(self): | |
| 83 | 133 if (sys.version_info >= (3, 0)): |
| 134 # Remove annoying warnings about unclosed socket in Python 3 | |
| 135 import warnings | |
| 136 warnings.simplefilter("ignore", ResourceWarning) | |
| 137 | |
| 3 | 138 DropOrthanc(_LOCAL) |
| 139 DropOrthanc(_REMOTE) | |
| 174 | 140 UninstallLuaCallbacks(_REMOTE) |
| 45 | 141 #print "In test", self._testMethodName |
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142 |
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143 def AssertSameImages(self, truth, url): |
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144 im = GetImage(_REMOTE, url) |
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145 self.assertTrue(CompareLists(truth, im.getdata())) |
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146 |
| 3 | 147 |
| 148 def test_system(self): | |
| 177 | 149 self.assertTrue('Version' in DoGet(_REMOTE, '/system')) |
| 150 self.assertEqual('0', DoGet(_REMOTE, '/statistics')['TotalDiskSize']) | |
| 151 self.assertEqual('0', DoGet(_REMOTE, '/statistics')['TotalUncompressedSize']) | |
| 152 | |
| 153 systemInfo = DoGet(_REMOTE, '/system') | |
| 154 if systemInfo["Version"] == "mainline": | |
| 155 print "Skipping version checks since you're currently in mainline" | |
| 156 return | |
| 157 | |
| 173 | 158 self.assertTrue(IsOrthancVersionAbove(_LOCAL, 0, 8, 6)) |
| 159 self.assertFalse(IsOrthancVersionAbove(_LOCAL, 0, 8, 7)) | |
| 160 self.assertTrue(IsOrthancVersionAbove(_LOCAL, 0, 7, 6)) | |
| 161 self.assertFalse(IsOrthancVersionAbove(_LOCAL, 0, 9, 6)) | |
| 162 self.assertFalse(IsOrthancVersionAbove(_LOCAL, 1, 8, 6)) | |
| 3 | 163 |
| 164 def test_upload(self): | |
| 173 | 165 self.assertEqual('0', DoGet(_REMOTE, '/statistics')['TotalDiskSize']) |
| 166 self.assertEqual('0', DoGet(_REMOTE, '/statistics')['TotalUncompressedSize']) | |
| 167 | |
| 168 sizeDummyCT = 2472 | |
| 169 sizeOverwrite = 2476 | |
| 170 instance = '66a662ce-7430e543-bad44d47-0dc5a943-ec7a538d' | |
| 171 | |
| 3 | 172 u = UploadInstance(_REMOTE, 'DummyCT.dcm') |
| 183 | 173 self.assertEqual(instance, u['ID']) |
| 3 | 174 self.assertEqual('Success', u['Status']) |
| 173 | 175 |
| 183 | 176 if True: |
| 177 # New test for Orthanc 1.4.3 | |
| 178 self.assertEqual('f2635388-f01d497a-15f7c06b-ad7dba06-c4c599fe', u['ParentSeries']) | |
| 179 self.assertEqual('b9c08539-26f93bde-c81ab0d7-bffaf2cb-a4d0bdd0', u['ParentStudy']) | |
| 180 self.assertEqual('6816cb19-844d5aee-85245eba-28e841e6-2414fae2', u['ParentPatient']) | |
| 181 | |
| 173 | 182 j = int(DoGet(_REMOTE, '/instances/%s/attachments/dicom-as-json/size' % instance)) |
| 183 s = sizeDummyCT + j | |
| 184 self.assertEqual('%d' % s, DoGet(_REMOTE, '/statistics')['TotalDiskSize']) | |
| 185 self.assertEqual('%d' % s, DoGet(_REMOTE, '/statistics')['TotalUncompressedSize']) | |
| 186 | |
| 3 | 187 u = UploadInstance(_REMOTE, 'DummyCT.dcm') |
| 188 self.assertEqual(1, len(DoGet(_REMOTE, '/patients'))) | |
| 189 self.assertEqual(1, len(DoGet(_REMOTE, '/studies'))) | |
| 190 self.assertEqual(1, len(DoGet(_REMOTE, '/series'))) | |
| 191 self.assertEqual(1, len(DoGet(_REMOTE, '/instances'))) | |
| 173 | 192 self.assertEqual('%d' % s, DoGet(_REMOTE, '/statistics')['TotalDiskSize']) |
| 193 self.assertEqual('%d' % s, DoGet(_REMOTE, '/statistics')['TotalUncompressedSize']) | |
| 194 | |
| 195 i = DoGet(_REMOTE, '/instances/%s/simplified-tags' % instance) | |
| 3 | 196 self.assertEqual('20070101', i['StudyDate']) |
| 173 | 197 self.assertEqual('KNIX', i['PatientName']) |
| 198 | |
| 199 if IsOrthancVersionAbove(_REMOTE, 1, 4, 2): | |
| 200 # Overwriting | |
| 201 self.assertEqual('Success', u['Status']) | |
| 202 else: | |
| 203 self.assertEqual('AlreadyStored', u['Status']) | |
| 204 | |
| 205 u = UploadInstance(_REMOTE, 'DummyCT-overwrite.dcm') | |
| 206 self.assertEqual(1, len(DoGet(_REMOTE, '/patients'))) | |
| 207 self.assertEqual(1, len(DoGet(_REMOTE, '/studies'))) | |
| 208 self.assertEqual(1, len(DoGet(_REMOTE, '/series'))) | |
| 209 self.assertEqual(1, len(DoGet(_REMOTE, '/instances'))) | |
| 210 | |
| 211 if IsOrthancVersionAbove(_REMOTE, 1, 4, 2): | |
| 212 # Overwriting | |
| 213 self.assertEqual('Success', u['Status']) | |
| 214 j2 = int(DoGet(_REMOTE, '/instances/%s/attachments/dicom-as-json/size' % instance)) | |
| 215 s2 = sizeOverwrite + j2 | |
| 216 self.assertNotEqual(s, s2) | |
| 217 self.assertNotEqual(j, j2) | |
| 218 self.assertEqual('%d' % s2, DoGet(_REMOTE, '/statistics')['TotalDiskSize']) | |
| 219 self.assertEqual('%d' % s2, DoGet(_REMOTE, '/statistics')['TotalUncompressedSize']) | |
| 220 i = DoGet(_REMOTE, '/instances/%s/simplified-tags' % instance) | |
| 221 self.assertEqual('ANOTHER', i['PatientName']) | |
| 222 else: | |
| 223 self.assertEqual('AlreadyStored', u['Status']) | |
| 224 self.assertEqual('%d' % s, DoGet(_REMOTE, '/statistics')['TotalDiskSize']) | |
| 225 self.assertEqual('%d' % s, DoGet(_REMOTE, '/statistics')['TotalUncompressedSize']) | |
| 3 | 226 |
| 5 | 227 def test_upload_2(self): |
| 3 | 228 i = UploadInstance(_REMOTE, 'DummyCT.dcm')['ID'] |
| 229 instance = DoGet(_REMOTE, '/instances/%s' % i) | |
| 230 self.assertEqual(i, instance['ID']) | |
| 231 self.assertEqual('1.2.840.113619.2.176.2025.1499492.7040.1171286242.109', | |
| 232 instance['MainDicomTags']['SOPInstanceUID']) | |
| 233 | |
| 234 series = DoGet(_REMOTE, '/series/%s' % instance['ParentSeries']) | |
| 235 self.assertEqual('1.2.840.113619.2.176.2025.1499492.7391.1171285944.394', | |
| 236 series['MainDicomTags']['SeriesInstanceUID']) | |
| 237 | |
| 238 study = DoGet(_REMOTE, '/studies/%s' % series['ParentStudy']) | |
| 239 self.assertEqual('1.2.840.113619.2.176.2025.1499492.7391.1171285944.390', | |
| 240 study['MainDicomTags']['StudyInstanceUID']) | |
| 241 | |
| 242 patient = DoGet(_REMOTE, '/patients/%s' % study['ParentPatient']) | |
| 243 self.assertEqual('ozp00SjY2xG', | |
| 244 patient['MainDicomTags']['PatientID']) | |
| 245 | |
| 246 dicom = DoGet(_REMOTE, '/instances/%s/file' % instance['ID']) | |
| 247 self.assertEqual(2472, len(dicom)) | |
| 248 self.assertEqual('3e29b869978b6db4886355a2b1132124', ComputeMD5(dicom)) | |
| 249 self.assertEqual(1, len(DoGet(_REMOTE, '/instances/%s/frames' % i))) | |
| 250 self.assertEqual('TWINOW', DoGet(_REMOTE, '/instances/%s/simplified-tags' % i)['StationName']) | |
| 251 self.assertEqual('TWINOW', DoGet(_REMOTE, '/instances/%s/tags' % i)['0008,1010']['Value']) | |
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252 self.assertEqual('TWINOW', DoGet(_REMOTE, '/instances/%s/tags?simplify' % i)['StationName']) |
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253 self.assertEqual('TWINOW', DoGet(_REMOTE, '/instances/%s/tags?short' % i)['0008,1010']) |
| 3 | 254 |
| 255 | |
| 5 | 256 def test_images(self): |
| 257 i = UploadInstance(_REMOTE, 'Phenix/IM-0001-0001.dcm')['ID'] | |
| 258 self.assertEqual(1, len(DoGet(_REMOTE, '/instances/%s/frames' % i))) | |
| 3 | 259 |
| 5 | 260 im = GetImage(_REMOTE, '/instances/%s/preview' % i) |
| 261 self.assertEqual("L", im.mode) | |
| 262 self.assertEqual(512, im.size[0]) | |
| 263 self.assertEqual(358, im.size[1]) | |
| 264 | |
| 265 im = GetImage(_REMOTE, '/instances/%s/image-uint8' % i) | |
| 266 self.assertEqual("L", im.mode) | |
| 267 self.assertEqual(512, im.size[0]) | |
| 268 self.assertEqual(358, im.size[1]) | |
| 269 | |
| 270 im = GetImage(_REMOTE, '/instances/%s/image-uint16' % i) | |
| 271 self.assertEqual(512, im.size[0]) | |
| 272 self.assertEqual(358, im.size[1]) | |
| 273 | |
| 274 im = GetImage(_REMOTE, '/instances/%s/frames/0/preview' % i) | |
| 275 self.assertEqual("L", im.mode) | |
| 276 self.assertEqual(512, im.size[0]) | |
| 277 self.assertEqual(358, im.size[1]) | |
| 278 | |
| 279 im = GetImage(_REMOTE, '/instances/%s/frames/0/image-uint8' % i) | |
| 280 self.assertEqual("L", im.mode) | |
| 281 self.assertEqual(512, im.size[0]) | |
| 282 self.assertEqual(358, im.size[1]) | |
| 283 | |
| 284 im = GetImage(_REMOTE, '/instances/%s/frames/0/image-uint16' % i) | |
| 285 self.assertEqual(512, im.size[0]) | |
| 286 self.assertEqual(358, im.size[1]) | |
| 64 | 287 |
| 288 # This is Little Endian Explicit | |
| 289 self.assertEqual('1.2.840.10008.1.2.1', DoGet(_REMOTE, '/instances/%s/header?simplify' % i)['TransferSyntaxUID']) | |
| 290 | |
| 6 | 291 |
| 292 def test_hierarchy(self): | |
| 293 UploadFolder(_REMOTE, 'Brainix/Epi') | |
| 294 UploadFolder(_REMOTE, 'Brainix/Flair') | |
| 295 UploadFolder(_REMOTE, 'Knee/T1') | |
| 296 UploadFolder(_REMOTE, 'Knee/T2') | |
| 297 | |
| 298 p = DoGet(_REMOTE, '/patients') | |
| 299 s = DoGet(_REMOTE, '/studies') | |
| 300 t = DoGet(_REMOTE, '/series') | |
| 301 self.assertEqual(2, len(p)) | |
| 302 self.assertEqual(2, len(s)) | |
| 303 self.assertEqual(4, len(t)) | |
| 304 self.assertEqual(94, len(DoGet(_REMOTE, '/instances'))) | |
| 305 | |
| 306 brainixPatient = '16738bc3-e47ed42a-43ce044c-a3414a45-cb069bd0' | |
| 307 brainixStudy = '27f7126f-4f66fb14-03f4081b-f9341db2-53925988' | |
| 308 brainixEpi = '2ac1316d-3e432022-62eabff2-c59f5475-9b1ac3f8' | |
| 309 brainixFlair = '1e2c125c-411b8e86-3f4fe68e-a7584dd3-c6da78f0' | |
| 310 | |
| 311 kneePatient = 'ca29faea-b6a0e17f-067743a1-8b778011-a48b2a17' | |
| 312 kneeStudy = '0a9b3153-2512774b-2d9580de-1fc3dcf6-3bd83918' | |
| 313 kneeT1 = '6de73705-c4e65c1b-9d9ea1b5-cabcd8e7-f15e4285' | |
| 314 kneeT2 = 'bbf7a453-0d34251a-03663b55-46bb31b9-ffd74c59' | |
| 315 | |
| 316 self.assertTrue(brainixPatient in p) | |
| 317 self.assertTrue(kneePatient in p) | |
| 318 self.assertTrue(brainixStudy in s) | |
| 319 self.assertTrue(kneeStudy in s) | |
| 320 self.assertTrue(brainixEpi in t) | |
| 321 self.assertTrue(brainixFlair in t) | |
| 322 self.assertTrue(kneeT1 in t) | |
| 323 self.assertTrue(kneeT2 in t) | |
| 324 | |
| 325 self.assertEqual(44, len(DoGet(_REMOTE, '/patients/%s/instances' % brainixPatient))) | |
| 326 self.assertEqual(2, len(DoGet(_REMOTE, '/patients/%s/series' % brainixPatient))) | |
| 327 self.assertEqual(1, len(DoGet(_REMOTE, '/patients/%s/studies' % brainixPatient))) | |
| 328 | |
| 329 self.assertEqual(50, len(DoGet(_REMOTE, '/patients/%s/instances' % kneePatient))) | |
| 330 self.assertEqual(2, len(DoGet(_REMOTE, '/patients/%s/series' % kneePatient))) | |
| 331 self.assertEqual(1, len(DoGet(_REMOTE, '/patients/%s/studies' % kneePatient))) | |
| 332 | |
| 333 self.assertEqual(2, len(DoGet(_REMOTE, '/studies/%s/series' % brainixStudy))) | |
| 334 self.assertEqual(44, len(DoGet(_REMOTE, '/studies/%s/instances' % brainixStudy))) | |
| 335 | |
| 336 self.assertEqual(2, len(DoGet(_REMOTE, '/studies/%s/series' % kneeStudy))) | |
| 337 self.assertEqual(50, len(DoGet(_REMOTE, '/studies/%s/instances' % kneeStudy))) | |
| 338 | |
| 339 self.assertEqual(22, len(DoGet(_REMOTE, '/series/%s/instances' % brainixEpi))) | |
| 340 self.assertEqual(22, len(DoGet(_REMOTE, '/series/%s/instances' % brainixFlair))) | |
| 341 self.assertEqual(24, len(DoGet(_REMOTE, '/series/%s/instances' % kneeT1))) | |
| 342 self.assertEqual(26, len(DoGet(_REMOTE, '/series/%s/instances' % kneeT2))) | |
| 343 | |
| 344 for patient in p: | |
| 345 for study in DoGet(_REMOTE, '/patients/%s/studies' % patient): | |
| 346 self.assertEqual(patient, study['ParentPatient']) | |
| 347 for series in DoGet(_REMOTE, '/studies/%s/series' % study['ID']): | |
| 348 self.assertEqual(study['ID'], series['ParentStudy']) | |
| 349 for instance in DoGet(_REMOTE, '/series/%s/instances' % series['ID']): | |
| 350 self.assertEqual(series['ID'], instance['ParentSeries']) | |
| 351 | |
| 352 self.assertEqual(json.dumps(DoGet(_REMOTE, '/instances/%s/attachments/dicom-as-json/data' % instance['ID'])), | |
| 353 json.dumps(DoGet(_REMOTE, '/instances/%s/tags' % instance['ID']))) | |
| 354 | |
| 355 | |
| 356 r = DoDelete(_REMOTE, "/studies/%s" % brainixStudy)['RemainingAncestor'] | |
| 357 self.assertEqual(1, len(DoGet(_REMOTE, '/patients'))) | |
| 358 self.assertEqual(1, len(DoGet(_REMOTE, '/studies'))) | |
| 359 self.assertEqual(2, len(DoGet(_REMOTE, '/series'))) | |
| 360 self.assertEqual(50, len(DoGet(_REMOTE, '/instances'))) | |
| 361 self.assertEqual(None, r) | |
| 362 | |
| 363 r = DoDelete(_REMOTE, "/series/%s" % kneeT2)['RemainingAncestor'] | |
| 364 self.assertEqual(1, len(DoGet(_REMOTE, '/patients'))) | |
| 365 self.assertEqual(1, len(DoGet(_REMOTE, '/studies'))) | |
| 366 self.assertEqual(1, len(DoGet(_REMOTE, '/series'))) | |
| 367 self.assertEqual(24, len(DoGet(_REMOTE, '/instances'))) | |
| 368 self.assertEqual('Study', r['Type']) | |
| 369 self.assertEqual(kneeStudy, r['ID']) | |
| 370 | |
| 371 r = DoDelete(_REMOTE, "/instances/%s" % DoGet(_REMOTE, '/instances')[0])['RemainingAncestor'] | |
| 372 self.assertEqual(1, len(DoGet(_REMOTE, '/patients'))) | |
| 373 self.assertEqual(1, len(DoGet(_REMOTE, '/studies'))) | |
| 374 self.assertEqual(1, len(DoGet(_REMOTE, '/series'))) | |
| 375 self.assertEqual(23, len(DoGet(_REMOTE, '/instances'))) | |
| 376 self.assertEqual('Series', r['Type']) | |
| 377 self.assertEqual(kneeT1, r['ID']) | |
| 378 | |
| 379 r = DoDelete(_REMOTE, "/patients/%s" % kneePatient)['RemainingAncestor'] | |
| 380 self.assertEqual(0, len(DoGet(_REMOTE, '/patients'))) | |
| 381 self.assertEqual(0, len(DoGet(_REMOTE, '/studies'))) | |
| 382 self.assertEqual(0, len(DoGet(_REMOTE, '/series'))) | |
| 383 self.assertEqual(0, len(DoGet(_REMOTE, '/instances'))) | |
| 384 self.assertEqual(None, r) | |
| 385 | |
| 386 DropOrthanc(_REMOTE) | |
| 387 self.assertEqual('0', DoGet(_REMOTE, '/statistics')['TotalDiskSize']) | |
| 388 self.assertEqual('0', DoGet(_REMOTE, '/statistics')['TotalUncompressedSize']) | |
| 7 | 389 |
| 390 | |
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391 def test_multiframe(self): |
| 7 | 392 i = UploadInstance(_REMOTE, 'Multiframe.dcm')['ID'] |
| 393 self.assertEqual(76, len(DoGet(_REMOTE, '/instances/%s/frames' % i))) | |
| 394 | |
| 395 im = GetImage(_REMOTE, '/instances/%s/frames/0/preview' % i) | |
| 396 self.assertEqual("L", im.mode) | |
| 397 self.assertEqual(512, im.size[0]) | |
| 398 self.assertEqual(512, im.size[1]) | |
| 399 | |
| 400 DoGet(_REMOTE, '/instances/%s/frames/0/image-uint8' % i) | |
| 401 DoGet(_REMOTE, '/instances/%s/frames/0/image-uint16' % i) | |
| 402 DoGet(_REMOTE, '/instances/%s/frames/75/preview' % i) | |
| 403 self.assertRaises(Exception, lambda: DoGet(_REMOTE, '/instances/%s/frames/aaa/preview' % i)) | |
| 404 self.assertRaises(Exception, lambda: DoGet(_REMOTE, '/instances/%s/frames/76/preview' % i)) | |
| 405 | |
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406 |
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407 def test_changes(self): |
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408 # Check emptiness |
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409 c = DoGet(_REMOTE, '/changes') |
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410 self.assertEqual(0, len(c['Changes'])) |
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411 self.assertEqual(0, c['Last']) |
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412 self.assertTrue(c['Done']) |
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413 c = DoGet(_REMOTE, '/changes?last') |
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414 self.assertEqual(0, len(c['Changes'])) |
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415 self.assertEqual(0, c['Last']) |
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416 self.assertTrue(c['Done']) |
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417 |
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418 # Add 1 instance |
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419 i = UploadInstance(_REMOTE, 'Brainix/Flair/IM-0001-0001.dcm')['ID'] |
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420 c = DoGet(_REMOTE, '/changes') |
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421 begin = c['Last'] |
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422 self.assertEqual(4, len(c['Changes'])) |
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423 self.assertTrue(c['Done']) |
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424 self.assertEqual(c['Changes'][-1]['Seq'], c['Last']) |
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425 |
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426 c = DoGet(_REMOTE, '/changes?last') |
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427 self.assertEqual(1, len(c['Changes'])) |
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428 self.assertEqual(begin, c['Last']) |
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429 self.assertTrue(c['Done']) |
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430 c = DoGet(_REMOTE, '/changes?limit=1&since=' + str(begin - 1)) |
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431 self.assertEqual(1, len(c['Changes'])) |
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432 self.assertEqual(begin, c['Last']) |
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433 self.assertTrue(c['Done']) |
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434 c = DoGet(_REMOTE, '/changes?limit=1&since=' + str(begin - 2)) |
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435 self.assertEqual(1, len(c['Changes'])) |
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436 self.assertEqual(begin - 1, c['Last']) |
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437 self.assertFalse(c['Done']) |
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438 c = DoGet(_REMOTE, '/changes?limit=1&since=' + str(begin - 3)) |
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439 self.assertEqual(1, len(c['Changes'])) |
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440 self.assertEqual(begin - 2, c['Last']) |
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441 self.assertFalse(c['Done']) |
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442 |
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443 UploadFolder(_REMOTE, 'Knee/T1') |
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444 UploadFolder(_REMOTE, 'Knee/T2') |
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445 since = begin |
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446 countPatients = 0 |
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447 countStudies = 0 |
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448 countSeries = 0 |
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449 countInstances = 0 |
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450 completed = 0 |
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451 while True: |
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452 c = DoGet(_REMOTE, '/changes', { 'since' : since, 'limit' : 3 }) |
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453 since = c['Last'] |
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454 for i in c['Changes']: |
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455 if i['ResourceType'] == 'Instance': |
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456 countInstances += 1 |
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457 if i['ResourceType'] == 'Patient': |
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458 countPatients += 1 |
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459 if i['ResourceType'] == 'Study': |
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460 countStudies += 1 |
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461 if i['ResourceType'] == 'Series': |
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462 countSeries += 1 |
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463 if i['ChangeType'] == 'NewInstance': |
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464 countInstances += 1 |
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465 if i['ChangeType'] == 'NewPatient': |
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466 countPatients += 1 |
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467 if i['ChangeType'] == 'NewStudy': |
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468 countStudies += 1 |
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469 if i['ChangeType'] == 'NewSeries': |
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470 countSeries += 1 |
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471 if i['ChangeType'] == 'CompletedSeries': |
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472 completed += 1 |
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473 self.assertTrue('ID' in i) |
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474 self.assertTrue('Path' in i) |
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475 self.assertTrue('Seq' in i) |
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476 if c['Done']: |
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477 break |
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478 |
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479 self.assertEqual(2 * 50, countInstances) |
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480 self.assertEqual(2 * 1, countPatients) |
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481 self.assertEqual(2 * 1, countStudies) |
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482 self.assertEqual(2 * 2, countSeries) |
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483 self.assertEqual(0, completed) |
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484 |
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485 |
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486 def test_archive(self): |
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487 UploadInstance(_REMOTE, 'Knee/T1/IM-0001-0001.dcm') |
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488 UploadInstance(_REMOTE, 'Knee/T2/IM-0001-0001.dcm') |
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489 |
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490 z = GetArchive(_REMOTE, '/patients/%s/archive' % DoGet(_REMOTE, '/patients')[0]) |
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491 self.assertEqual(2, len(z.namelist())) |
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492 |
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493 z = GetArchive(_REMOTE, '/studies/%s/archive' % DoGet(_REMOTE, '/studies')[0]) |
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494 self.assertEqual(2, len(z.namelist())) |
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495 |
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496 z = GetArchive(_REMOTE, '/series/%s/archive' % DoGet(_REMOTE, '/series')[0]) |
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497 self.assertEqual(1, len(z.namelist())) |
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498 |
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499 UploadInstance(_REMOTE, 'Brainix/Flair/IM-0001-0001.dcm') |
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500 |
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501 z = GetArchive(_REMOTE, '/patients/%s/archive' % DoGet(_REMOTE, '/patients')[0]) |
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502 self.assertEqual(2, len(z.namelist())) |
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503 |
|
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504 |
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505 def test_media_archive(self): |
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506 UploadInstance(_REMOTE, 'Knee/T1/IM-0001-0001.dcm') |
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507 UploadInstance(_REMOTE, 'Knee/T2/IM-0001-0001.dcm') |
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508 |
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509 z = GetArchive(_REMOTE, '/patients/%s/media' % DoGet(_REMOTE, '/patients')[0]) |
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510 self.assertEqual(3, len(z.namelist())) |
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511 self.assertTrue('IMAGES/IM0' in z.namelist()) |
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512 self.assertTrue('IMAGES/IM1' in z.namelist()) |
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513 self.assertTrue('DICOMDIR' in z.namelist()) |
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514 |
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515 try: |
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516 os.remove('/tmp/DICOMDIR') |
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517 except: |
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518 # The file does not exist |
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519 pass |
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520 |
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521 z.extract('DICOMDIR', '/tmp') |
| 45 | 522 a = subprocess.check_output([ FindExecutable('dciodvfy'), '/tmp/DICOMDIR' ], |
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523 stderr = subprocess.STDOUT).split('\n') |
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524 self.assertEqual(3, len(a)) |
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525 self.assertTrue(a[0].startswith('Warning')) |
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526 self.assertEqual('BasicDirectory', a[1]) |
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527 self.assertEqual('', a[2]) |
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528 |
| 45 | 529 a = subprocess.check_output([ FindExecutable('dcentvfy'), '/tmp/DICOMDIR' ], |
|
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530 stderr = subprocess.STDOUT).split('\n') |
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531 self.assertEqual(1, len(a)) |
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532 self.assertEqual('', a[0]) |
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533 |
| 45 | 534 a = subprocess.check_output([ FindExecutable('dcm2xml'), '/tmp/DICOMDIR' ]) |
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535 self.assertTrue(re.search('1.3.46.670589.11.17521.5.0.3124.2008081908590448738', a) != None) |
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536 self.assertTrue(re.search('1.3.46.670589.11.17521.5.0.3124.2008081909113806560', a) != None) |
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537 |
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538 os.remove('/tmp/DICOMDIR') |
| 10 | 539 |
| 540 | |
| 541 def test_protection(self): | |
| 542 UploadInstance(_REMOTE, 'Knee/T1/IM-0001-0001.dcm') | |
| 543 UploadInstance(_REMOTE, 'Brainix/Flair/IM-0001-0001.dcm') | |
| 544 self.assertEqual(2, len(DoGet(_REMOTE, '/patients'))) | |
| 545 a = DoGet(_REMOTE, '/patients')[0] | |
| 546 b = DoGet(_REMOTE, '/patients')[1] | |
| 547 self.assertEqual(0, DoGet(_REMOTE, '/patients/%s/protected' % a)) | |
| 548 DoPut(_REMOTE, '/patients/%s/protected' % a, '0', 'text/plain') | |
| 549 self.assertEqual(0, DoGet(_REMOTE, '/patients/%s/protected' % a)) | |
| 550 DoPut(_REMOTE, '/patients/%s/protected' % a, '1', 'text/plain') | |
| 551 self.assertEqual(1, DoGet(_REMOTE, '/patients/%s/protected' % a)) | |
| 552 DoPut(_REMOTE, '/patients/%s/protected' % a, '0', 'text/plain') | |
| 553 self.assertEqual(0, DoGet(_REMOTE, '/patients/%s/protected' % a)) | |
| 554 | |
| 555 | |
| 12 | 556 def test_raw_tags(self): |
| 10 | 557 i = UploadInstance(_REMOTE, 'PrivateTags.dcm')['ID'] |
| 558 | |
| 559 dicom = DoGet(_REMOTE, '/instances/%s/file' % i) | |
| 560 self.assertEqual('1a7c56cb02d6e742cc9c856a8ac182e3', ComputeMD5(dicom)) | |
| 561 | |
| 562 s = '/instances/%s/content/' % i | |
| 563 | |
| 564 self.assertEqual('LOGIQBOOK', DoGet(_REMOTE, s + '0008-1010').strip()) | |
| 565 self.assertRaises(Exception, lambda: DoGet(_REMOTE, s + '0008-1011')) | |
| 566 | |
| 567 self.assertEqual('Abdomen', DoGet(_REMOTE, s + '7fe1-1001/0/7fe1-1008/0/7fe1-1057').strip()) | |
| 568 self.assertEqual('cla_3c', DoGet(_REMOTE, s + '7fe1-1001/0/7fe1-1008/8/7fe1-1057').strip()) | |
| 569 | |
| 570 UploadInstance(_REMOTE, 'Brainix/Epi/IM-0001-0001.dcm') | |
| 571 UploadInstance(_REMOTE, 'Brainix/Flair/IM-0001-0001.dcm') | |
| 572 UploadInstance(_REMOTE, 'Knee/T1/IM-0001-0001.dcm') | |
| 573 UploadInstance(_REMOTE, 'Knee/T2/IM-0001-0001.dcm') | |
| 574 | |
| 575 for i in DoGet(_REMOTE, '/instances'): | |
| 576 aid = DoGet(_REMOTE, '/instances/%s' % i)['MainDicomTags']['SOPInstanceUID'] | |
| 577 self.assertEqual(aid, DoGet(_REMOTE, '/instances/%s/content/0008-0018' % i).replace(chr(0), '')) | |
| 578 | |
| 579 | |
| 580 def test_raw_tags_mdn(self): | |
| 581 # Bug reported by Cyril Paulus | |
| 582 i = UploadInstance(_REMOTE, 'PrivateMDNTags.dcm')['ID'] | |
| 583 self.assertAlmostEqual(0.000027, DoGet(_REMOTE, '/instances/%s/content/7053-1000' % i)) | |
| 584 | |
| 585 | |
| 586 def test_modify_instance(self): | |
| 587 i = UploadInstance(_REMOTE, 'PrivateTags.dcm')['ID'] | |
| 588 modified = DoPost(_REMOTE, '/instances/%s/modify' % i, | |
| 589 json.dumps({ | |
| 590 "Replace" : { | |
| 591 "PatientName" : "hello", | |
| 592 #"PatientID" : "world" | |
| 593 }, | |
| 594 "Remove" : [ "StationName" ], | |
|
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595 "RemovePrivateTags" : True |
| 10 | 596 }), |
| 597 'application/json') | |
| 598 j = DoPost(_REMOTE, '/instances', modified, 'application/dicom')['ID'] | |
| 599 | |
| 600 self.assertNotEqual('hello', DoGet(_REMOTE, '/instances/%s/content/0010-0010' % i).strip()) | |
| 601 #self.assertNotEqual('world', DoGet(_REMOTE, '/instances/%s/content/0010-0020' % i).strip()) | |
| 83 | 602 self.assertEqual('LOGIQBOOK', DoGet(_REMOTE, '/instances/%s/content/0008-1010' % i).strip()) |
| 10 | 603 DoGet(_REMOTE, '/instances/%s/content/6003-1010' % i) # Some private tag |
| 604 | |
| 605 self.assertEqual('hello', DoGet(_REMOTE, '/instances/%s/content/0010-0010' % j).strip()) | |
| 606 #self.assertEqual('world', DoGet(_REMOTE, '/instances/%s/content/0010-0020' % j).strip()) | |
| 607 self.assertRaises(Exception, lambda: DoGet(_REMOTE, '/instances/%s/content/0008-1010' % j)) | |
| 608 self.assertRaises(Exception, lambda: DoGet(_REMOTE, '/instances/%s/content/6003-1010' % j)) | |
| 609 | |
| 610 | |
| 611 def test_modify_series(self): | |
| 612 # Upload 4 images from the same series | |
| 613 for i in range(4): | |
| 614 UploadInstance(_REMOTE, 'Brainix/Epi/IM-0001-000%d.dcm' % (i + 1)) | |
| 615 | |
| 616 origSeries = DoGet(_REMOTE, '/series')[0] | |
| 617 newSeries = DoPost(_REMOTE, '/series/%s/modify' % origSeries, | |
| 618 '{"Replace":{"PatientName":"Jodogne"}}', | |
| 619 'application/json')['ID'] | |
| 620 | |
| 621 self.assertEqual(origSeries, DoGet(_REMOTE, '/series/%s' % newSeries)['ModifiedFrom']) | |
| 622 instances = DoGet(_REMOTE, '/series/%s' % newSeries)['Instances'] | |
| 623 self.assertEqual(4, len(instances)) | |
| 624 for i in instances: | |
| 625 j = DoGet(_REMOTE, '/instances/%s' % i)['ModifiedFrom'] | |
| 626 self.assertEqual(newSeries, DoGet(_REMOTE, '/instances/%s' % i)['ParentSeries']) | |
| 627 self.assertEqual(origSeries, DoGet(_REMOTE, '/instances/%s' % j)['ParentSeries']) | |
| 628 | |
| 629 self.assertEqual('Jodogne', DoGet(_REMOTE, '/instances/%s/content/0010-0010' % i).strip()) | |
| 630 self.assertNotEqual('Jodogne', DoGet(_REMOTE, '/instances/%s/content/0010-0010' % j).strip()) | |
| 631 | |
| 632 | |
| 633 def test_modify_study(self): | |
| 634 # Upload 4 images from the 2 series of the same study | |
| 635 for i in range(4): | |
| 636 UploadInstance(_REMOTE, 'Brainix/Flair/IM-0001-000%d.dcm' % (i + 1)) | |
| 637 UploadInstance(_REMOTE, 'Brainix/Epi/IM-0001-000%d.dcm' % (i + 1)) | |
| 638 | |
| 639 origStudy = DoGet(_REMOTE, '/studies')[0] | |
| 640 newStudy = DoPost(_REMOTE, '/studies/%s/modify' % origStudy, | |
| 641 '{"Replace":{"PatientName":"Jodogne"}}', | |
| 642 'application/json')['ID'] | |
| 643 | |
| 644 self.assertEqual(origStudy, DoGet(_REMOTE, '/studies/%s' % newStudy)['ModifiedFrom']) | |
| 645 series = DoGet(_REMOTE, '/studies/%s' % newStudy)['Series'] | |
| 646 self.assertEqual(2, len(series)) | |
| 647 for s in series: | |
| 648 ss = DoGet(_REMOTE, '/series/%s' % s)['ModifiedFrom'] | |
| 649 self.assertEqual(newStudy, DoGet(_REMOTE, '/series/%s' % s)['ParentStudy']) | |
| 650 self.assertEqual(origStudy, DoGet(_REMOTE, '/series/%s' % ss)['ParentStudy']) | |
| 651 | |
| 652 instances = DoGet(_REMOTE, '/series/%s' % s)['Instances'] | |
| 653 for i in instances: | |
| 654 j = DoGet(_REMOTE, '/instances/%s' % i)['ModifiedFrom'] | |
| 655 self.assertEqual(s, DoGet(_REMOTE, '/instances/%s' % i)['ParentSeries']) | |
| 656 self.assertEqual(ss, DoGet(_REMOTE, '/instances/%s' % j)['ParentSeries']) | |
| 657 | |
| 658 self.assertEqual('Jodogne', DoGet(_REMOTE, '/instances/%s/content/0010-0010' % i).strip()) | |
| 659 self.assertNotEqual('Jodogne', DoGet(_REMOTE, '/instances/%s/content/0010-0010' % j).strip()) | |
| 660 | |
| 661 | |
| 662 def test_anonymize_series(self): | |
| 663 # Upload 4 images from the same series | |
| 664 for i in range(4): | |
| 665 UploadInstance(_REMOTE, 'Brainix/Epi/IM-0001-000%d.dcm' % (i + 1)) | |
| 666 | |
| 667 origSeries = DoGet(_REMOTE, '/series')[0] | |
| 668 newSeries = DoPost(_REMOTE, '/series/%s/anonymize' % origSeries, | |
| 669 '{}', | |
| 670 'application/json')['ID'] | |
| 671 | |
| 672 self.assertEqual(origSeries, DoGet(_REMOTE, '/series/%s' % newSeries)['AnonymizedFrom']) | |
| 673 instances = DoGet(_REMOTE, '/series/%s' % newSeries)['Instances'] | |
| 674 self.assertEqual(4, len(instances)) | |
| 675 for i in instances: | |
| 676 j = DoGet(_REMOTE, '/instances/%s' % i)['AnonymizedFrom'] | |
| 677 self.assertEqual(newSeries, DoGet(_REMOTE, '/instances/%s' % i)['ParentSeries']) | |
| 678 self.assertEqual(origSeries, DoGet(_REMOTE, '/instances/%s' % j)['ParentSeries']) | |
| 679 | |
| 680 DoGet(_REMOTE, '/instances/%s/content/0008-1010' % j) | |
| 681 self.assertRaises(Exception, lambda: DoGet(_REMOTE, '/instances/%s/content/0008-1010' % i)) | |
| 682 | |
| 683 | |
| 684 def test_anonymize_study(self): | |
| 685 # Upload 4 images from the 2 series of the same study | |
| 686 for i in range(4): | |
| 687 UploadInstance(_REMOTE, 'Brainix/Flair/IM-0001-000%d.dcm' % (i + 1)) | |
| 688 UploadInstance(_REMOTE, 'Brainix/Epi/IM-0001-000%d.dcm' % (i + 1)) | |
| 689 | |
| 690 origStudy = DoGet(_REMOTE, '/studies')[0] | |
| 691 newStudy = DoPost(_REMOTE,'/studies/%s/anonymize' % origStudy, | |
| 692 '{"Replace":{"PatientName":"Jodogne"}}', | |
| 693 'application/json')['ID'] | |
| 694 | |
| 695 self.assertEqual(origStudy, DoGet(_REMOTE, '/studies/%s' % newStudy)['AnonymizedFrom']) | |
| 696 series = DoGet(_REMOTE, '/studies/%s' % newStudy)['Series'] | |
| 697 self.assertEqual(2, len(series)) | |
| 698 for s in series: | |
| 699 ss = DoGet(_REMOTE, '/series/%s' % s)['AnonymizedFrom'] | |
| 700 self.assertEqual(newStudy, DoGet(_REMOTE, '/series/%s' % s)['ParentStudy']) | |
| 701 self.assertEqual(origStudy, DoGet(_REMOTE, '/series/%s' % ss)['ParentStudy']) | |
| 702 | |
| 703 instances = DoGet(_REMOTE, '/series/%s' % s)['Instances'] | |
| 704 for i in instances: | |
| 705 j = DoGet(_REMOTE, '/instances/%s' % i)['AnonymizedFrom'] | |
| 706 self.assertEqual(s, DoGet(_REMOTE, '/instances/%s' % i)['ParentSeries']) | |
| 707 self.assertEqual(ss, DoGet(_REMOTE, '/instances/%s' % j)['ParentSeries']) | |
| 708 | |
| 709 self.assertEqual('Jodogne', DoGet(_REMOTE, '/instances/%s/content/0010-0010' % i).strip()) | |
| 710 self.assertNotEqual('Jodogne', DoGet(_REMOTE, '/instances/%s/content/0010-0010' % j).strip()) | |
| 11 | 711 |
| 712 | |
| 713 | |
| 714 def test_storescu(self): | |
| 715 # Check emptiness | |
| 716 e = DoGet(_REMOTE, '/exports') | |
| 717 self.assertEqual(0, len(e['Exports'])) | |
| 718 self.assertEqual(0, e['Last']) | |
| 719 self.assertTrue(e['Done']) | |
| 720 e = DoGet(_REMOTE, '/exports?last') | |
| 721 self.assertEqual(0, len(e['Exports'])) | |
| 722 self.assertEqual(0, e['Last']) | |
| 723 self.assertTrue(e['Done']) | |
| 724 | |
| 725 # Add 1 instance | |
| 726 i = UploadInstance(_REMOTE, 'DummyCT.dcm')['ID'] | |
| 727 self.assertEqual(0, len(DoGet(_LOCAL, '/patients'))) | |
| 728 | |
| 729 # Export the instance | |
| 730 j = DoPost(_REMOTE, '/modalities/orthanctest/store', str(i), 'text/plain') # instance | |
| 731 self.assertEqual(1, len(DoGet(_LOCAL, '/patients'))) | |
| 732 self.assertEqual(1, len(DoGet(_LOCAL, '/studies'))) | |
| 733 self.assertEqual(1, len(DoGet(_LOCAL, '/series'))) | |
| 734 self.assertEqual(1, len(DoGet(_LOCAL, '/instances'))) | |
| 735 | |
| 736 e = DoGet(_REMOTE, '/exports') | |
| 737 self.assertEqual(1, len(e['Exports'])) | |
| 738 self.assertTrue(e['Done']) | |
| 739 self.assertEqual(e['Exports'][-1]['Seq'], e['Last']) | |
| 740 e = DoGet(_REMOTE, '/exports?limit=1') | |
| 741 self.assertEqual(1, len(e['Exports'])) | |
| 742 self.assertTrue(e['Done']) | |
| 743 self.assertEqual(e['Exports'][-1]['Seq'], e['Last']) | |
| 744 e = DoGet(_REMOTE, '/exports?last') | |
| 745 self.assertEqual(1, len(e['Exports'])) | |
| 746 self.assertTrue(e['Done']) | |
| 747 self.assertEqual(e['Exports'][-1]['Seq'], e['Last']) | |
| 748 seqInstance = e['Last'] | |
| 749 | |
| 750 # Export the series | |
| 751 j = DoPost(_REMOTE, '/modalities/orthanctest/store', 'f2635388-f01d497a-15f7c06b-ad7dba06-c4c599fe', 'text/plain') | |
| 752 | |
| 753 e = DoGet(_REMOTE, '/exports') | |
| 754 self.assertEqual(2, len(e['Exports'])) | |
| 755 self.assertTrue(e['Done']) | |
| 756 self.assertEqual(e['Exports'][-1]['Seq'], e['Last']) | |
| 757 seqSeries = e['Last'] | |
| 758 self.assertNotEqual(seqInstance, seqSeries) | |
| 759 e = DoGet(_REMOTE, '/exports?limit=1&since=0') | |
| 760 self.assertEqual(1, len(e['Exports'])) | |
| 761 self.assertFalse(e['Done']) | |
| 762 self.assertEqual(e['Exports'][-1]['Seq'], seqInstance) | |
| 763 e = DoGet(_REMOTE, '/exports?limit=1&since=' + str(seqInstance)) | |
| 764 self.assertEqual(1, len(e['Exports'])) | |
| 765 self.assertTrue(e['Done']) | |
| 766 self.assertEqual(e['Exports'][-1]['Seq'], seqSeries) | |
| 767 e = DoGet(_REMOTE, '/exports?last') | |
| 768 self.assertEqual(1, len(e['Exports'])) | |
| 769 self.assertTrue(e['Done']) | |
| 770 self.assertEqual(e['Exports'][-1]['Seq'], seqSeries) | |
| 771 | |
| 772 # Export the study | |
| 773 j = DoPost(_REMOTE, '/modalities/orthanctest/store', 'b9c08539-26f93bde-c81ab0d7-bffaf2cb-a4d0bdd0', 'text/plain') | |
| 774 seqStudy = DoGet(_REMOTE, '/exports')['Last'] | |
| 775 | |
| 776 # Export the patient | |
| 777 j = DoPost(_REMOTE, '/modalities/orthanctest/store', '6816cb19-844d5aee-85245eba-28e841e6-2414fae2', 'text/plain') | |
| 778 self.assertEqual(1, len(DoGet(_LOCAL, '/patients'))) | |
| 779 self.assertEqual(1, len(DoGet(_LOCAL, '/studies'))) | |
| 780 self.assertEqual(1, len(DoGet(_LOCAL, '/series'))) | |
| 781 self.assertEqual(1, len(DoGet(_LOCAL, '/instances'))) | |
| 782 | |
| 783 e = DoGet(_REMOTE, '/exports') | |
| 784 self.assertEqual(4, len(e['Exports'])) | |
| 785 self.assertTrue(e['Done']) | |
| 786 self.assertEqual(e['Exports'][-1]['Seq'], e['Last']) | |
| 787 seqPatient = e['Last'] | |
| 788 self.assertNotEqual(seqInstance, seqSeries) | |
| 789 self.assertNotEqual(seqSeries, seqStudy) | |
| 790 self.assertNotEqual(seqStudy, seqPatient) | |
| 791 self.assertTrue(seqInstance < seqSeries) | |
| 792 self.assertTrue(seqSeries < seqStudy) | |
| 793 self.assertTrue(seqStudy < seqPatient) | |
| 794 e = DoGet(_REMOTE, '/exports?limit=1&since=0') | |
| 795 self.assertEqual(1, len(e['Exports'])) | |
| 796 self.assertFalse(e['Done']) | |
| 797 self.assertEqual(e['Exports'][-1]['Seq'], seqInstance) | |
| 798 e = DoGet(_REMOTE, '/exports?limit=1&since=' + str(seqInstance)) | |
| 799 self.assertEqual(1, len(e['Exports'])) | |
| 800 self.assertFalse(e['Done']) | |
| 801 self.assertEqual(e['Exports'][-1]['Seq'], seqSeries) | |
| 802 e = DoGet(_REMOTE, '/exports?limit=1&since=' + str(seqSeries)) | |
| 803 self.assertEqual(1, len(e['Exports'])) | |
| 804 self.assertFalse(e['Done']) | |
| 805 self.assertEqual(e['Exports'][-1]['Seq'], seqStudy) | |
| 806 e = DoGet(_REMOTE, '/exports?limit=1&since=' + str(seqStudy)) | |
| 807 self.assertEqual(1, len(e['Exports'])) | |
| 808 self.assertTrue(e['Done']) | |
| 809 self.assertEqual(e['Exports'][-1]['Seq'], seqPatient) | |
| 810 e = DoGet(_REMOTE, '/exports?last') | |
| 811 self.assertEqual(1, len(e['Exports'])) | |
| 812 self.assertTrue(e['Done']) | |
| 813 self.assertEqual(e['Exports'][-1]['Seq'], seqPatient) | |
| 814 | |
| 815 | |
| 816 # Check the content of the logged information | |
| 817 e = DoGet(_REMOTE, '/exports')['Exports'] | |
| 818 | |
| 819 if 'PatientID' in e[0]: | |
| 820 # Since Orthanc 0.8.6 | |
| 821 patient = 'PatientID' | |
| 822 study = 'StudyInstanceUID' | |
| 823 series = 'SeriesInstanceUID' | |
| 824 instance = 'SOPInstanceUID' | |
| 825 else: | |
| 826 # Up to Orthanc 0.8.5 | |
| 827 patient = 'PatientId' | |
| 828 study = 'StudyInstanceUid' | |
| 829 series = 'SeriesInstanceUid' | |
| 830 instance = 'SopInstanceUid' | |
| 831 | |
| 832 for k in range(4): | |
| 833 self.assertTrue('Date' in e[k]) | |
| 834 self.assertTrue('Seq' in e[k]) | |
| 835 self.assertEqual('orthanctest', e[k]['RemoteModality']) | |
| 836 | |
| 837 self.assertEqual(10, len(e[0])) | |
| 838 self.assertEqual('Instance', e[0]['ResourceType']) | |
| 839 self.assertEqual('66a662ce-7430e543-bad44d47-0dc5a943-ec7a538d', e[0]['ID']) | |
| 840 self.assertEqual('/instances/66a662ce-7430e543-bad44d47-0dc5a943-ec7a538d', e[0]['Path']) | |
| 841 self.assertEqual('1.2.840.113619.2.176.2025.1499492.7040.1171286242.109', e[0][instance]) | |
| 842 self.assertEqual('1.2.840.113619.2.176.2025.1499492.7391.1171285944.394', e[0][series]) | |
| 843 self.assertEqual('1.2.840.113619.2.176.2025.1499492.7391.1171285944.390', e[0][study]) | |
| 844 self.assertEqual('ozp00SjY2xG', e[0][patient]) | |
| 845 | |
| 846 self.assertEqual(9, len(e[1])) | |
| 847 self.assertEqual('Series', e[1]['ResourceType']) | |
| 848 self.assertEqual('f2635388-f01d497a-15f7c06b-ad7dba06-c4c599fe', e[1]['ID']) | |
| 849 self.assertEqual('/series/f2635388-f01d497a-15f7c06b-ad7dba06-c4c599fe', e[1]['Path']) | |
| 850 self.assertEqual('1.2.840.113619.2.176.2025.1499492.7391.1171285944.394', e[1][series]) | |
| 851 self.assertEqual('1.2.840.113619.2.176.2025.1499492.7391.1171285944.390', e[1][study]) | |
| 852 self.assertEqual('ozp00SjY2xG', e[1][patient]) | |
| 853 | |
| 854 self.assertEqual(8, len(e[2])) | |
| 855 self.assertEqual('Study', e[2]['ResourceType']) | |
| 856 self.assertEqual('b9c08539-26f93bde-c81ab0d7-bffaf2cb-a4d0bdd0', e[2]['ID']) | |
| 857 self.assertEqual('/studies/b9c08539-26f93bde-c81ab0d7-bffaf2cb-a4d0bdd0', e[2]['Path']) | |
| 858 self.assertEqual('1.2.840.113619.2.176.2025.1499492.7391.1171285944.390', e[2][study]) | |
| 859 self.assertEqual('ozp00SjY2xG', e[2][patient]) | |
| 860 | |
| 861 self.assertEqual(7, len(e[3])) | |
| 862 self.assertEqual('Patient', e[3]['ResourceType']) | |
| 863 self.assertEqual('6816cb19-844d5aee-85245eba-28e841e6-2414fae2', e[3]['ID']) | |
| 864 self.assertEqual('/patients/6816cb19-844d5aee-85245eba-28e841e6-2414fae2', e[3]['Path']) | |
| 865 self.assertEqual('ozp00SjY2xG', e[3][patient]) | |
| 866 | |
| 867 DropOrthanc(_REMOTE) | |
| 868 self.assertEqual(0, len(DoGet(_REMOTE, '/exports')['Exports'])) | |
| 869 | |
| 870 | |
| 871 def test_store_peer(self): | |
| 872 self.assertEqual(0, len(DoGet(_LOCAL, '/exports')['Exports'])) | |
| 873 self.assertEqual(0, len(DoGet(_REMOTE, '/exports')['Exports'])) | |
| 874 | |
| 875 i = UploadInstance(_REMOTE, 'DummyCT.dcm')['ID'] | |
| 876 self.assertEqual(0, len(DoGet(_LOCAL, '/patients'))) | |
| 877 self.assertEqual(1, len(DoGet(_REMOTE, '/patients'))) | |
| 878 | |
| 879 j = DoPost(_REMOTE, '/peers/peer/store', str(i), 'text/plain') | |
| 880 self.assertEqual(1, len(DoGet(_LOCAL, '/patients'))) | |
| 881 self.assertEqual(1, len(DoGet(_REMOTE, '/patients'))) | |
| 882 | |
| 883 self.assertEqual(1, len(DoGet(_REMOTE, '/exports')['Exports'])) | |
| 884 | |
| 885 DropOrthanc(_REMOTE) | |
| 886 self.assertEqual(0, len(DoGet(_REMOTE, '/exports')['Exports'])) | |
| 887 | |
| 888 | |
| 889 def test_bulk_storescu(self): | |
| 890 self.assertEqual(0, len(DoGet(_LOCAL, '/patients'))) | |
| 891 | |
| 892 a = UploadInstance(_REMOTE, 'Knee/T1/IM-0001-0001.dcm') | |
| 893 b = UploadInstance(_REMOTE, 'Knee/T2/IM-0001-0001.dcm') | |
| 894 | |
| 895 j = DoPost(_REMOTE, '/modalities/orthanctest/store', [ a['ID'], b['ID'] ], 'application/json') | |
| 896 self.assertEqual(2, len(DoGet(_LOCAL, '/instances'))) | |
| 897 | |
| 898 DropOrthanc(_LOCAL) | |
| 899 | |
| 900 # Send using patient's UUID | |
| 901 self.assertEqual(0, len(DoGet(_LOCAL, '/instances'))) | |
| 902 j = DoPost(_REMOTE, '/modalities/orthanctest/store', | |
| 903 [ 'ca29faea-b6a0e17f-067743a1-8b778011-a48b2a17' ], 'application/json') | |
| 904 self.assertEqual(2, len(DoGet(_LOCAL, '/instances'))) | |
| 905 | |
| 906 | |
| 907 def test_color(self): | |
| 908 i = UploadInstance(_REMOTE, 'ColorTestMalaterre.dcm')['ID'] | |
| 909 im = GetImage(_REMOTE, '/instances/%s/preview' % i) | |
| 910 self.assertEqual("RGB", im.mode) | |
| 911 self.assertEqual(41, im.size[0]) | |
| 912 self.assertEqual(41, im.size[1]) | |
| 913 | |
| 914 # http://effbot.org/zone/pil-comparing-images.htm | |
| 13 | 915 truth = Image.open(GetDatabasePath('ColorTestMalaterre.png')) |
| 11 | 916 self.assertTrue(ImageChops.difference(im, truth).getbbox() is None) |
| 917 | |
| 918 | |
| 12 | 919 def test_faking_ruby_put(self): |
| 920 UploadInstance(_REMOTE, 'Knee/T1/IM-0001-0001.dcm') | |
| 921 UploadInstance(_REMOTE, 'Brainix/Flair/IM-0001-0001.dcm') | |
| 922 self.assertEqual(2, len(DoGet(_REMOTE, '/patients'))) | |
| 923 a = DoGet(_REMOTE, '/patients')[0] | |
| 924 b = DoGet(_REMOTE, '/patients')[1] | |
| 925 self.assertEqual(0, DoGet(_REMOTE, '/patients/%s/protected' % a)) | |
| 926 DoGet(_REMOTE, '/patients/%s/protected' % a, data = { '_method' : 'PUT' }, body = '0') | |
| 927 self.assertEqual(0, DoGet(_REMOTE, '/patients/%s/protected' % a)) | |
| 928 DoGet(_REMOTE, '/patients/%s/protected' % a, data = { '_method' : 'PUT' }, body = '1') | |
| 929 self.assertEqual(1, DoGet(_REMOTE, '/patients/%s/protected' % a)) | |
| 930 DoGet(_REMOTE, '/patients/%s/protected' % a, data = { '_method' : 'PUT' }, body = '0') | |
| 931 self.assertEqual(0, DoGet(_REMOTE, '/patients/%s/protected' % a)) | |
| 932 | |
| 933 | |
| 934 def test_faking_ruby_delete(self): | |
| 935 UploadInstance(_REMOTE, 'Knee/T1/IM-0001-0001.dcm') | |
| 936 UploadInstance(_REMOTE, 'Brainix/Flair/IM-0001-0001.dcm') | |
| 937 self.assertEqual(2, len(DoGet(_REMOTE, '/patients'))) | |
| 938 a = DoGet(_REMOTE, '/patients')[0] | |
| 939 b = DoGet(_REMOTE, '/patients')[1] | |
| 940 DoGet(_REMOTE, '/patients/%s' % a, data = { '_method' : 'DELETE' }) | |
| 941 self.assertEqual(1, len(DoGet(_REMOTE, '/patients'))) | |
| 942 DoGet(_REMOTE, '/patients/%s' % b, data = { '_method' : 'DELETE' }) | |
| 943 self.assertEqual(0, len(DoGet(_REMOTE, '/patients'))) | |
| 944 | |
| 945 | |
| 946 def test_faking_google_put(self): | |
| 947 UploadInstance(_REMOTE, 'Knee/T1/IM-0001-0001.dcm') | |
| 948 UploadInstance(_REMOTE, 'Brainix/Flair/IM-0001-0001.dcm') | |
| 949 self.assertEqual(2, len(DoGet(_REMOTE, '/patients'))) | |
| 950 a = DoGet(_REMOTE, '/patients')[0] | |
| 951 b = DoGet(_REMOTE, '/patients')[1] | |
| 952 self.assertEqual(0, DoGet(_REMOTE, '/patients/%s/protected' % a)) | |
| 953 DoPost(_REMOTE, '/patients/%s/protected' % a, headers = { 'X-HTTP-Method-Override' : 'PUT' }, data = '0') | |
| 954 self.assertEqual(0, DoGet(_REMOTE, '/patients/%s/protected' % a)) | |
| 955 DoPost(_REMOTE, '/patients/%s/protected' % a, headers = { 'X-HTTP-Method-Override' : 'PUT' }, data = '1') | |
| 956 self.assertEqual(1, DoGet(_REMOTE, '/patients/%s/protected' % a)) | |
| 957 DoPost(_REMOTE, '/patients/%s/protected' % a, headers = { 'X-HTTP-Method-Override' : 'PUT' }, data = '0') | |
| 958 self.assertEqual(0, DoGet(_REMOTE, '/patients/%s/protected' % a)) | |
| 959 | |
| 960 | |
| 961 def test_faking_google_delete(self): | |
| 962 UploadInstance(_REMOTE, 'Knee/T1/IM-0001-0001.dcm') | |
| 963 UploadInstance(_REMOTE, 'Brainix/Flair/IM-0001-0001.dcm') | |
| 964 self.assertEqual(2, len(DoGet(_REMOTE, '/patients'))) | |
| 965 a = DoGet(_REMOTE, '/patients')[0] | |
| 966 b = DoGet(_REMOTE, '/patients')[1] | |
| 967 DoPost(_REMOTE, '/patients/%s' % a, headers = { 'X-HTTP-Method-Override' : 'DELETE' }) | |
| 968 self.assertEqual(1, len(DoGet(_REMOTE, '/patients'))) | |
| 969 DoPost(_REMOTE, '/patients/%s' % b, headers = { 'X-HTTP-Method-Override' : 'DELETE' }) | |
| 970 self.assertEqual(0, len(DoGet(_REMOTE, '/patients'))) | |
| 971 | |
| 972 | |
| 973 def test_lua(self): | |
| 974 self.assertEqual(42, DoPost(_REMOTE, '/tools/execute-script', 'print(42)')) | |
| 975 self.assertTrue(IsDefinedInLua(_REMOTE, 'PrintRecursive')) | |
| 976 self.assertFalse(IsDefinedInLua(_REMOTE, 'HelloWorld')) | |
| 977 | |
| 978 | |
| 979 def test_metadata(self): | |
| 980 UploadInstance(_REMOTE, 'Knee/T1/IM-0001-0001.dcm') | |
| 981 p = DoGet(_REMOTE, '/patients')[0] | |
| 982 i = DoGet(_REMOTE, '/instances')[0] | |
| 983 | |
| 984 m = DoGet(_REMOTE, '/patients/%s/metadata' % p) | |
| 985 self.assertEqual(1, len(m)) | |
| 986 self.assertEqual('LastUpdate', m[0]) | |
| 987 | |
| 988 m = DoGet(_REMOTE, '/instances/%s/metadata' % i) | |
| 145 | 989 self.assertEqual(8, len(m)) |
| 12 | 990 self.assertTrue('IndexInSeries' in m) |
| 991 self.assertTrue('ReceptionDate' in m) | |
| 992 self.assertTrue('RemoteAET' in m) | |
|
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993 self.assertTrue('Origin' in m) |
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994 self.assertTrue('TransferSyntax' in m) |
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995 self.assertTrue('SopClassUid' in m) |
| 145 | 996 self.assertTrue('RemoteIP' in m) |
| 997 self.assertTrue('HttpUsername' in m) | |
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998 self.assertEqual(DoGet(_REMOTE, '/instances/%s/metadata/IndexInSeries' % i), 1) |
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999 self.assertEqual(DoGet(_REMOTE, '/instances/%s/metadata/Origin' % i), 'RestApi') |
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1000 self.assertEqual(DoGet(_REMOTE, '/instances/%s/metadata/RemoteAET' % i), '') # None, received by REST API |
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1001 self.assertEqual(DoGet(_REMOTE, '/instances/%s/metadata/TransferSyntax' % i), '1.2.840.10008.1.2.4.91') # JPEG2k |
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1002 self.assertEqual(DoGet(_REMOTE, '/instances/%s/metadata/SopClassUid' % i), '1.2.840.10008.5.1.4.1.1.4') |
| 12 | 1003 |
| 1004 # Play with custom metadata | |
| 1005 DoPut(_REMOTE, '/patients/%s/metadata/5555' % p, 'coucou') | |
| 1006 m = DoGet(_REMOTE, '/patients/%s/metadata' % p) | |
| 1007 self.assertEqual(2, len(m)) | |
| 1008 self.assertTrue('LastUpdate' in m) | |
| 1009 self.assertTrue('5555' in m) | |
| 1010 self.assertEqual('coucou', DoGet(_REMOTE, '/patients/%s/metadata/5555' % p)) | |
| 1011 DoPut(_REMOTE, '/patients/%s/metadata/5555' % p, 'hello') | |
| 1012 self.assertEqual('hello', DoGet(_REMOTE, '/patients/%s/metadata/5555' % p)) | |
| 1013 DoDelete(_REMOTE, '/patients/%s/metadata/5555' % p) | |
| 1014 m = DoGet(_REMOTE, '/patients/%s/metadata' % p) | |
| 1015 self.assertEqual(1, len(m)) | |
| 1016 self.assertTrue('LastUpdate' in m) | |
| 13 | 1017 |
| 1018 | |
| 1019 def test_statistics(self): | |
| 1020 # Upload 16 instances | |
| 1021 for i in range(4): | |
| 1022 UploadInstance(_REMOTE, 'Brainix/Flair/IM-0001-000%d.dcm' % (i + 1)) | |
| 1023 UploadInstance(_REMOTE, 'Brainix/Epi/IM-0001-000%d.dcm' % (i + 1)) | |
| 1024 UploadInstance(_REMOTE, 'Knee/T1/IM-0001-000%d.dcm' % (i + 1)) | |
| 1025 UploadInstance(_REMOTE, 'Knee/T2/IM-0001-000%d.dcm' % (i + 1)) | |
| 1026 | |
| 1027 s = DoGet(_REMOTE, '/statistics') | |
| 1028 self.assertEqual(16, s['CountInstances']) | |
| 1029 self.assertEqual(2, s['CountPatients']) | |
| 1030 self.assertEqual(2, s['CountStudies']) | |
| 1031 self.assertEqual(4, s['CountSeries']) | |
| 1032 d = int(s['TotalUncompressedSize']) | |
| 1033 | |
| 1034 e = 0 | |
| 1035 for patient in DoGet(_REMOTE, '/patients'): | |
| 1036 s = DoGet(_REMOTE, '/patients/%s/statistics' % patient) | |
| 1037 self.assertEqual(8, s['CountInstances']) | |
| 1038 self.assertEqual(1, s['CountStudies']) | |
| 1039 self.assertEqual(2, s['CountSeries']) | |
| 1040 e += int(s['UncompressedSize']) | |
| 1041 | |
| 1042 for study in DoGet(_REMOTE, '/studies'): | |
| 1043 s = DoGet(_REMOTE, '/studies/%s/statistics' % study) | |
| 1044 self.assertEqual(8, s['CountInstances']) | |
| 1045 self.assertEqual(2, s['CountSeries']) | |
| 1046 e += int(s['UncompressedSize']) | |
| 1047 | |
| 1048 for series in DoGet(_REMOTE, '/series'): | |
| 1049 s = DoGet(_REMOTE, '/series/%s/statistics' % series) | |
| 1050 self.assertEqual(4, s['CountInstances']) | |
| 1051 e += int(s['UncompressedSize']) | |
| 1052 | |
| 1053 self.assertEqual(3 * d, e) | |
| 1054 | |
| 1055 | |
| 1056 def test_custom_attachment(self): | |
| 1057 UploadInstance(_REMOTE, 'Brainix/Flair/IM-0001-0001.dcm') | |
| 1058 patient = DoGet(_REMOTE, '/patients')[0] | |
| 1059 instance = DoGet(_REMOTE, '/instances')[0] | |
| 1060 size = int(DoGet(_REMOTE, '/patients/%s/statistics' % patient)['DiskSize']) | |
| 1061 self.assertEqual(size, int(DoGet(_REMOTE, '/statistics')['TotalDiskSize'])) | |
| 1062 | |
| 1063 self.assertEqual(0, len(DoGet(_REMOTE, '/patients/%s/attachments' % patient))) | |
| 1064 self.assertEqual(2, len(DoGet(_REMOTE, '/instances/%s/attachments' % instance))) | |
| 1065 self.assertTrue('dicom' in DoGet(_REMOTE, '/instances/%s/attachments' % instance)) | |
| 1066 self.assertTrue('dicom-as-json' in DoGet(_REMOTE, '/instances/%s/attachments' % instance)) | |
| 1067 | |
| 1068 self.assertRaises(Exception, lambda: DoPut(_REMOTE, '/patients/%s/attachments/22' % patient, 'hello')) | |
| 1069 hello = 'hellohellohellohellohellohellohellohellohello' | |
| 1070 DoPut(_REMOTE, '/patients/%s/attachments/1025' % patient, hello) | |
| 1071 self.assertEqual(int(DoGet(_REMOTE, '/patients/%s/statistics' % patient)['DiskSize']), | |
| 1072 int(DoGet(_REMOTE, '/statistics')['TotalDiskSize'])) | |
| 1073 self.assertEqual(int(DoGet(_REMOTE, '/patients/%s/statistics' % patient)['DiskSize']), | |
| 1074 size + int(DoGet(_REMOTE, '/patients/%s/attachments/1025/compressed-size' % patient))) | |
| 1075 | |
| 1076 DoPut(_REMOTE, '/patients/%s/attachments/1026' % patient, 'world') | |
| 1077 self.assertEqual(int(DoGet(_REMOTE, '/patients/%s/statistics' % patient)['DiskSize']), | |
| 1078 int(DoGet(_REMOTE, '/statistics')['TotalDiskSize'])) | |
| 1079 self.assertEqual(int(DoGet(_REMOTE, '/patients/%s/statistics' % patient)['DiskSize']), | |
| 1080 size + | |
| 1081 int(DoGet(_REMOTE, '/patients/%s/attachments/1025/compressed-size' % patient)) + | |
| 1082 int(DoGet(_REMOTE, '/patients/%s/attachments/1026/compressed-size' % patient))) | |
| 1083 | |
| 1084 self.assertEqual(2, len(DoGet(_REMOTE, '/patients/%s/attachments' % patient))) | |
| 1085 self.assertEqual(hello, DoGet(_REMOTE, '/patients/%s/attachments/1025/data' % patient)) | |
| 1086 self.assertEqual('world', DoGet(_REMOTE, '/patients/%s/attachments/1026/data' % patient)) | |
| 1087 DoPost(_REMOTE, '/patients/%s/attachments/1025/verify-md5' % patient) | |
| 1088 DoPost(_REMOTE, '/patients/%s/attachments/1026/verify-md5' % patient) | |
| 1089 DoPut(_REMOTE, '/patients/%s/attachments/1026' % patient, 'world2') | |
| 1090 self.assertEqual('world2', DoGet(_REMOTE, '/patients/%s/attachments/1026/data' % patient)) | |
| 1091 | |
| 1092 self.assertRaises(Exception, lambda: DoDelete(_REMOTE, '/instances/%s/attachments/dicom' % instance)) | |
| 1093 DoDelete(_REMOTE, '/patients/%s/attachments/1025' % patient) | |
| 1094 self.assertEqual(int(DoGet(_REMOTE, '/patients/%s/statistics' % patient)['DiskSize']), | |
| 1095 int(DoGet(_REMOTE, '/statistics')['TotalDiskSize'])) | |
| 1096 self.assertEqual(int(DoGet(_REMOTE, '/patients/%s/statistics' % patient)['DiskSize']), | |
| 1097 size + int(DoGet(_REMOTE, '/patients/%s/attachments/1026/compressed-size' % patient))) | |
| 1098 | |
| 1099 self.assertEqual(1, len(DoGet(_REMOTE, '/patients/%s/attachments' % patient))) | |
| 1100 DoDelete(_REMOTE, '/patients/%s/attachments/1026' % patient) | |
| 1101 self.assertEqual(0, len(DoGet(_REMOTE, '/patients/%s/attachments' % patient))) | |
| 1102 | |
| 1103 self.assertEqual(int(DoGet(_REMOTE, '/patients/%s/statistics' % patient)['DiskSize']), size) | |
| 1104 self.assertEqual(size, int(DoGet(_REMOTE, '/statistics')['TotalDiskSize'])) | |
| 1105 | |
| 1106 | |
| 1107 def test_incoming_storescu(self): | |
| 1108 self.assertEqual(0, len(DoGet(_REMOTE, '/patients'))) | |
| 45 | 1109 subprocess.check_call([ FindExecutable('storescu'), |
|
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1110 _REMOTE['Server'], str(_REMOTE['DicomPort']), |
| 13 | 1111 GetDatabasePath('ColorTestImageJ.dcm') ]) |
| 1112 self.assertEqual(1, len(DoGet(_REMOTE, '/patients'))) | |
| 1113 | |
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1114 i = DoGet(_REMOTE, '/instances') |
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1115 self.assertEqual(1, len(i)) |
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1116 m = DoGet(_REMOTE, '/instances/%s/metadata' % i[0]) |
| 145 | 1117 self.assertEqual(8, len(m)) |
|
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1118 self.assertTrue('IndexInSeries' in m) |
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1119 self.assertTrue('ReceptionDate' in m) |
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1120 self.assertTrue('RemoteAET' in m) |
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1121 self.assertTrue('Origin' in m) |
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1122 self.assertTrue('TransferSyntax' in m) |
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1123 self.assertTrue('SopClassUid' in m) |
| 145 | 1124 self.assertTrue('RemoteIP' in m) |
| 1125 self.assertTrue('CalledAET' in m) | |
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1126 self.assertEqual(DoGet(_REMOTE, '/instances/%s/metadata/IndexInSeries' % i[0]), 1) |
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1127 self.assertEqual(DoGet(_REMOTE, '/instances/%s/metadata/Origin' % i[0]), 'DicomProtocol') |
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1128 self.assertEqual(DoGet(_REMOTE, '/instances/%s/metadata/RemoteAET' % i[0]), 'STORESCU') |
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1129 self.assertEqual(DoGet(_REMOTE, '/instances/%s/metadata/TransferSyntax' % i[0]), '1.2.840.10008.1.2.1') |
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1130 self.assertEqual(DoGet(_REMOTE, '/instances/%s/metadata/SopClassUid' % i[0]), '1.2.840.10008.5.1.4.1.1.7') |
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1131 |
| 13 | 1132 |
| 1133 def test_incoming_findscu(self): | |
| 1134 UploadInstance(_REMOTE, 'Multiframe.dcm') | |
| 1135 UploadInstance(_REMOTE, 'ColorTestImageJ.dcm') | |
| 1136 | |
| 1137 i = CallFindScu([ '-k', '0008,0052=PATIENT', '-k', '0010,0010' ]) | |
| 1138 patientNames = re.findall('\(0010,0010\).*?\[(.*?)\]', i) | |
| 1139 self.assertEqual(2, len(patientNames)) | |
| 1140 self.assertTrue('Test Patient BG ' in patientNames) | |
| 1141 self.assertTrue('Anonymized' in patientNames) | |
| 1142 | |
| 1143 i = CallFindScu([ '-k', '0008,0052=SERIES', '-k', '0008,0021' ]) | |
| 1144 series = re.findall('\(0008,0021\).*?\[\s*(.*?)\s*\]', i) | |
| 1145 self.assertEqual(2, len(series)) | |
| 1146 self.assertTrue('20070208' in series) | |
| 1147 self.assertTrue('19980312' in series) | |
| 1148 | |
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1149 i = CallFindScu([ '-k', '0008,0052=SERIES', '-k', '0008,0021', '-k', 'ModalitiesInStudy=MR\\XA' ]) |
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1150 series = re.findall('\(0008,0021\).*?\[\s*(.*?)\s*\]', i) |
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1151 self.assertEqual(1, len(series)) |
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1152 self.assertTrue('19980312' in series) |
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1153 |
| 13 | 1154 i = CallFindScu([ '-k', '0008,0052=SERIES', '-k', 'PatientName=Anonymized' ]) |
| 1155 series = re.findall('\(0010,0010\).*?\[\s*(.*?)\s*\]', i) | |
| 1156 self.assertEqual(1, len(series)) | |
| 1157 | |
| 1158 # Test the "CaseSentitivePN" flag (false by default) | |
| 1159 i = CallFindScu([ '-k', '0008,0052=SERIES', '-k', 'PatientName=anonymized' ]) | |
| 1160 series = re.findall('\(0010,0010\).*?\[\s*(.*?)\s*\]', i) | |
| 1161 self.assertEqual(1, len(series)) | |
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1162 |
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1163 # Test returning sequence values (only since Orthanc 0.9.5) |
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1164 i = CallFindScu([ '-k', '0008,0052=SERIES', '-k', '0008,2112' ]) # "ColorTestImageJ" has this sequence tag |
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1165 sequences = re.findall('\(0008,2112\)', i) |
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1166 self.assertEqual(1, len(sequences)) |
| 70 | 1167 |
| 1168 # Test range search (buggy if Orthanc <= 0.9.6) | |
| 1169 i = CallFindScu([ '-k', '0008,0052=STUDY', '-k', 'StudyDate=19980312-' ]) | |
| 1170 studies = re.findall('\(0008,0020\).*?\[\s*(.*?)\s*\]', i) | |
| 1171 self.assertEqual(2, len(studies)) | |
| 1172 self.assertTrue('20070208' in studies) | |
| 1173 self.assertTrue('19980312' in studies) | |
| 1174 i = CallFindScu([ '-k', '0008,0052=STUDY', '-k', 'StudyDate=19980312-19980312' ]) | |
| 1175 studies = re.findall('\(0008,0020\).*?\[\s*(.*?)\s*\]', i) | |
| 1176 self.assertEqual(1, len(studies)) | |
| 1177 self.assertTrue('19980312' in studies) | |
| 1178 i = CallFindScu([ '-k', '0008,0052=STUDY', '-k', 'StudyDate=-19980312' ]) | |
| 1179 studies = re.findall('\(0008,0020\).*?\[\s*(.*?)\s*\]', i) | |
| 1180 self.assertEqual(1, len(studies)) | |
| 1181 self.assertTrue('19980312' in studies) | |
| 13 | 1182 |
| 1183 | |
| 1184 def test_incoming_movescu(self): | |
| 1185 UploadInstance(_REMOTE, 'Multiframe.dcm') | |
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1186 |
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1187 # No matching patient, so no job is created |
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1188 self.assertEqual(0, len(DoGet(_LOCAL, '/patients'))) |
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1189 CallMoveScu([ '--patient', '-k', '0008,0052=PATIENT', '-k', 'PatientID=none' ]) |
| 13 | 1190 self.assertEqual(0, len(DoGet(_LOCAL, '/patients'))) |
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1191 |
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1192 # 1 Matching patient, track the job |
| 138 | 1193 self.assertTrue(MonitorJob(_REMOTE, lambda: CallMoveScu([ |
| 1194 '--patient', | |
| 1195 '-k', '0008,0052=PATIENT', | |
| 1196 '-k', 'PatientID=12345678' | |
| 1197 ]))) | |
| 13 | 1198 self.assertEqual(1, len(DoGet(_LOCAL, '/patients'))) |
| 1199 | |
| 1200 | |
| 1201 def test_findscu(self): | |
| 1202 i = UploadInstance(_REMOTE, 'DummyCT.dcm')['ID'] | |
| 1203 j = UploadInstance(_REMOTE, 'Issue22.dcm')['ID'] | |
| 1204 k = UploadInstance(_REMOTE, 'ColorTestImageJ.dcm')['ID'] | |
| 1205 DoPost(_REMOTE, '/modalities/orthanctest/store', str(i), 'text/plain') | |
| 1206 | |
| 1207 # Test the "find-patient" level | |
| 1208 p = DoPost(_REMOTE, '/modalities/orthanctest/find-patient', { }) | |
| 1209 self.assertEqual(1, len(p)) | |
| 1210 self.assertEqual('ozp00SjY2xG', p[0]['PatientID']) | |
| 1211 | |
| 1212 # Test wildcards constraints. The "LO" value representation | |
| 1213 # for PatientID is always case-sensitive, but the "PN" for | |
| 1214 # PatientName might depend on the implementation: | |
| 1215 # "GenerateConfigurationForTests.py" will force it to be case | |
| 1216 # insensitive (which was the default until Orthanc 0.8.6). | |
| 1217 p = DoPost(_REMOTE, '/modalities/orthanctest/find-patient', { 'PatientName' : 'K*' }) | |
| 1218 self.assertEqual(1, len(p)) | |
| 1219 | |
| 1220 p = DoPost(_REMOTE, '/modalities/orthanctest/find-patient', { 'PatientName' : 'k*' }) | |
| 1221 self.assertEqual(1, len(p)) | |
| 1222 | |
| 1223 p = DoPost(_REMOTE, '/modalities/orthanctest/find-patient', { 'PatientID' : 'ozp*' }) | |
| 1224 self.assertEqual(1, len(p)) | |
| 1225 | |
| 1226 p = DoPost(_REMOTE, '/modalities/orthanctest/find-patient', { 'PatientID' : 'o?p*' }) | |
| 1227 self.assertEqual(1, len(p)) | |
| 1228 | |
| 1229 p = DoPost(_REMOTE, '/modalities/orthanctest/find-patient', { 'PatientID' : '0?q*' }) | |
| 1230 self.assertEqual(0, len(p)) | |
| 1231 | |
| 1232 p = DoPost(_REMOTE, '/modalities/orthanctest/find-patient', { 'PatientName' : 'B*' }) | |
| 1233 self.assertEqual(0, len(p)) | |
| 1234 | |
| 1235 p = DoPost(_REMOTE, '/modalities/orthanctest/find-patient', { 'PatientName' : 'b*' }) | |
| 1236 self.assertEqual(0, len(p)) | |
| 1237 | |
| 1238 DoPost(_REMOTE, '/modalities/orthanctest/store', str(j), 'text/plain') | |
| 1239 DoPost(_REMOTE, '/modalities/orthanctest/store', str(k), 'text/plain') | |
| 1240 DoPost(_REMOTE, '/modalities/orthanctest/find-patient', { }) | |
| 1241 self.assertEqual(3, len(DoPost(_REMOTE, '/modalities/orthanctest/find-patient', { }))) | |
| 1242 | |
| 1243 p = DoPost(_REMOTE, '/modalities/orthanctest/find-patient', { 'PatientName' : 'A*' }) | |
| 1244 self.assertEqual(2, len(p)) | |
| 1245 | |
| 1246 # Test the "find-study" level. This is the instance "ColorTestImageJ.dcm" | |
| 1247 s = DoPost(_REMOTE, '/modalities/orthanctest/find-study', { 'PatientID' : 'B9uTHKOZ' }) | |
| 1248 self.assertEqual(1, len(s)) | |
| 1249 self.assertEqual('20070208', s[0]['StudyDate']) | |
| 1250 | |
| 1251 # Test range searches | |
| 1252 t = DoPost(_REMOTE, '/modalities/orthanctest/find-study', { 'PatientID' : 'B9uTHKOZ', | |
| 1253 'StudyDate' : '-20070101' }) | |
| 1254 self.assertEqual(0, len(t)) | |
| 1255 | |
| 1256 t = DoPost(_REMOTE, '/modalities/orthanctest/find-study', { 'PatientID' : 'B9uTHKOZ', | |
| 1257 'StudyDate' : '20090101-' }) | |
| 1258 self.assertEqual(0, len(t)) | |
| 1259 | |
| 1260 t = DoPost(_REMOTE, '/modalities/orthanctest/find-study', { 'PatientID' : 'B9uTHKOZ', | |
| 1261 'StudyDate' : '20070101-' }) | |
| 1262 self.assertEqual(1, len(t)) | |
| 1263 | |
| 1264 t = DoPost(_REMOTE, '/modalities/orthanctest/find-study', { 'PatientID' : 'B9uTHKOZ', | |
| 1265 'StudyDate' : '-20090101' }) | |
| 1266 self.assertEqual(1, len(t)) | |
| 1267 | |
| 1268 t = DoPost(_REMOTE, '/modalities/orthanctest/find-study', { 'PatientID' : 'B9uTHKOZ', | |
| 1269 'StudyDate' : '20070207-20070207' }) | |
| 1270 self.assertEqual(0, len(t)) | |
| 1271 | |
| 1272 t = DoPost(_REMOTE, '/modalities/orthanctest/find-study', { 'PatientID' : 'B9uTHKOZ', | |
| 1273 'StudyDate' : '20070208-20070208' }) | |
| 1274 self.assertEqual(1, len(t)) | |
| 1275 | |
| 1276 t = DoPost(_REMOTE, '/modalities/orthanctest/find-study', { 'PatientID' : 'B9uTHKOZ', | |
| 1277 'StudyDate' : '20070209-20070209' }) | |
| 1278 self.assertEqual(0, len(t)) | |
| 1279 | |
| 1280 # Test the ModalitiesInStudy tag | |
| 1281 t = DoPost(_REMOTE, '/modalities/orthanctest/find-study', { | |
| 1282 'PatientID' : 'B9uTHKOZ', | |
| 1283 'ModalitiesInStudy' : 'US' }) | |
| 1284 self.assertEqual(0, len(t)) | |
| 1285 | |
| 1286 t = DoPost(_REMOTE, '/modalities/orthanctest/find-study', { | |
| 1287 'PatientID' : 'B9uTHKOZ', | |
| 1288 'ModalitiesInStudy' : 'CT' }) | |
| 1289 self.assertEqual(1, len(t)) | |
| 1290 | |
| 1291 t = DoPost(_REMOTE, '/modalities/orthanctest/find-study', { | |
| 1292 'PatientID' : 'B9uTHKOZ', | |
| 1293 'ModalitiesInStudy' : 'US\\CT' }) | |
| 1294 self.assertEqual(1, len(t)) | |
| 1295 | |
| 1296 # Test the "find-series" level | |
| 1297 t = DoPost(_REMOTE, '/modalities/orthanctest/find-series', { | |
| 1298 'PatientID' : 'B9uTHKOZ', | |
| 1299 'StudyInstanceUID' : s[0]['StudyInstanceUID'] }) | |
| 1300 self.assertEqual(1, len(t)) | |
| 1301 | |
| 1302 # Test "\" separator | |
| 1303 t = DoPost(_REMOTE, '/modalities/orthanctest/find-series', { | |
| 1304 'PatientID' : 'B9uTHKOZ', | |
| 1305 'StudyInstanceUID' : s[0]['StudyInstanceUID'], | |
| 1306 'Modality' : 'MR\\CT\\US' }) | |
| 1307 self.assertEqual(1, len(t)) | |
| 1308 | |
| 1309 t = DoPost(_REMOTE, '/modalities/orthanctest/find-series', { | |
| 1310 'PatientID' : 'B9uTHKOZ', | |
| 1311 'StudyInstanceUID' : s[0]['StudyInstanceUID'], | |
| 1312 'Modality' : 'MR\\US' }) | |
| 1313 self.assertEqual(0, len(t)) | |
| 1314 | |
| 1315 | |
| 1316 def test_update_modalities(self): | |
| 1317 try: | |
| 1318 DoDelete(_REMOTE, '/modalities/toto') | |
| 1319 except: | |
| 1320 pass | |
| 1321 try: | |
| 1322 DoDelete(_REMOTE, '/modalities/tata') | |
| 1323 except: | |
| 1324 pass | |
| 1325 self.assertRaises(Exception, lambda: DoGet(_REMOTE, '/modalities/toto')) | |
| 1326 DoPut(_REMOTE, '/modalities/toto', [ "STORESCP", "localhost", 2000 ]) | |
| 116 | 1327 DoPut(_REMOTE, '/modalities/tata', [ "STORESCP", "localhost", 2000, 'MedInria' ]) # check backward compatiblity with obsolete manufacturer |
| 1328 DoDelete(_REMOTE, '/modalities/tata') | |
| 124 | 1329 DoPut(_REMOTE, '/modalities/tata', [ "STORESCP", "localhost", 2000, 'GenericNoUniversalWildcard' ]) |
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1330 DoDelete(_REMOTE, '/modalities/tata') |
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1331 DoPut(_REMOTE, '/modalities/tata', [ "STORESCP", "localhost", 2000, 'GenericNoWildcardInDates' ]) |
| 128 | 1332 modalitiesReadback = DoGet(_REMOTE, '/modalities?expand') |
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1333 self.assertEqual('STORESCP', modalitiesReadback['tata']['AET']) |
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1334 self.assertEqual('localhost', modalitiesReadback['tata']['Host']) |
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1335 self.assertEqual(2000, modalitiesReadback['tata']['Port']) |
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1336 self.assertEqual('GenericNoWildcardInDates', modalitiesReadback['tata']['Manufacturer']) |
| 116 | 1337 self.assertRaises(Exception, lambda: DoPut(_REMOTE, '/modalities/toto', [ "STORESCP", "localhost", 2000, 'InvalidManufacturerName' ])) |
| 13 | 1338 self.assertTrue('store' in DoGet(_REMOTE, '/modalities/toto')) |
| 1339 self.assertTrue('store' in DoGet(_REMOTE, '/modalities/tata')) | |
| 1340 DoDelete(_REMOTE, '/modalities/toto') | |
| 1341 DoDelete(_REMOTE, '/modalities/tata') | |
| 1342 self.assertRaises(Exception, lambda: DoGet(_REMOTE, '/modalities/toto')) | |
| 1343 self.assertRaises(Exception, lambda: DoGet(_REMOTE, '/modalities/tata')) | |
| 1344 | |
| 1345 | |
| 1346 def test_update_peers(self): | |
| 1347 # curl -X PUT http://localhost:8042/peers/toto -d '["http://localhost:8042/"]' -v | |
| 1348 try: | |
| 1349 DoDelete(_REMOTE, '/peers/toto') | |
| 1350 except: | |
| 1351 pass | |
| 1352 try: | |
| 1353 DoDelete(_REMOTE, '/peers/tata') | |
| 1354 except: | |
| 1355 pass | |
| 1356 self.assertRaises(Exception, lambda: DoGet(_REMOTE, '/peers/toto')) | |
| 1357 DoPut(_REMOTE, '/peers/toto', [ 'http://localhost:8042/' ]) | |
| 1358 DoPut(_REMOTE, '/peers/tata', [ 'http://localhost:8042/', 'user', 'pass' ]) | |
| 128 | 1359 self.assertTrue('tata' in DoGet(_REMOTE, '/peers')) |
| 1360 peersReadback = DoGet(_REMOTE, '/peers?expand') | |
| 1361 self.assertEqual('http://localhost:8042/', peersReadback['tata']['Url']) | |
| 1362 self.assertEqual('user', peersReadback['tata']['Username']) | |
| 1363 self.assertFalse('Password' in peersReadback['tata']) # make sure no sensitive data is included | |
| 1364 self.assertFalse('CertificateFile' in peersReadback['tata']) # make sure no sensitive data is included | |
| 1365 self.assertFalse('CertificateKeyFile' in peersReadback['tata']) # make sure no sensitive data is included | |
| 1366 self.assertFalse('CertificateKeyPassword' in peersReadback['tata']) # make sure no sensitive data is included | |
| 1367 self.assertFalse('Pkcs11' in peersReadback['tata']) # make sure no sensitive data is included | |
| 13 | 1368 self.assertRaises(Exception, lambda: DoPut(_REMOTE, '/peers/toto', [ 'http://localhost:8042/', 'a' ])) |
| 1369 self.assertRaises(Exception, lambda: DoPut(_REMOTE, '/peers/toto', [ 'http://localhost:8042/', 'a', 'b', 'c' ])) | |
| 1370 self.assertTrue('store' in DoGet(_REMOTE, '/peers/toto')) | |
| 1371 self.assertTrue('store' in DoGet(_REMOTE, '/peers/tata')) | |
| 1372 DoDelete(_REMOTE, '/peers/toto') | |
| 1373 DoDelete(_REMOTE, '/peers/tata') | |
| 1374 self.assertRaises(Exception, lambda: DoGet(_REMOTE, '/peers/toto')) | |
| 1375 self.assertRaises(Exception, lambda: DoGet(_REMOTE, '/peers/tata')) | |
| 1376 | |
| 1377 | |
| 1378 def test_mesterhazy_modification(self): | |
| 1379 # When I modify a series ( eg. curl | |
| 1380 # http://localhost:8042/series/uidhere/modify -X POST -d | |
| 1381 # '{"Replace":{"SeriesDate":"19990101"}}' ) the modified | |
| 1382 # series is added to a new Study, instead of the existing | |
| 1383 # Study. Fixed in Orthanc 0.7.5 | |
| 1384 | |
| 1385 u = UploadInstance(_REMOTE, 'DummyCT.dcm') | |
| 1386 study = 'b9c08539-26f93bde-c81ab0d7-bffaf2cb-a4d0bdd0' | |
| 1387 series = 'f2635388-f01d497a-15f7c06b-ad7dba06-c4c599fe' | |
| 1388 | |
| 1389 modified = DoPost(_REMOTE, '/series/%s/modify' % series, | |
| 1390 json.dumps({ "Replace" : { "SeriesDate" : "19990101" }})) | |
| 1391 | |
| 1392 self.assertEqual(study, DoGet(_REMOTE, '/series/%s' % modified['ID']) ['ParentStudy']) | |
| 1393 | |
| 1394 | |
| 1395 def test_create(self): | |
| 1396 i = DoPost(_REMOTE, '/tools/create-dicom', | |
| 1397 json.dumps({ | |
| 1398 'PatientName' : 'Jodogne', | |
| 1399 'Modality' : 'CT', | |
| 58 | 1400 'SOPClassUID' : '1.2.840.10008.5.1.4.1.1.1', |
| 13 | 1401 'PixelData' : 'data:image/png;base64,iVBORw0KGgoAAAANSUhEUgAAAAUAAAAFCAYAAACNbyblAAAAHElEQVQI12P4//8/w38GIAXDIBKE0DHxgljNBAAO9TXL0Y4OHwAAAABJRU5ErkJggg==' # red dot in RGBA |
| 1402 })) | |
| 1403 | |
| 1404 self.assertEqual('Jodogne', DoGet(_REMOTE, '/instances/%s/content/PatientName' % i['ID']).strip()) | |
| 1405 self.assertEqual('CT', DoGet(_REMOTE, '/instances/%s/content/Modality' % i['ID']).strip()) | |
| 1406 | |
| 1407 png = GetImage(_REMOTE, '/instances/%s/preview' % i['ID']) | |
| 1408 self.assertEqual((5, 5), png.size) | |
| 1409 | |
| 38 | 1410 j = DoGet(_REMOTE, i['Path']) |
| 1411 self.assertEqual('Instance', j['Type']) | |
| 1412 self.assertEqual(j['ID'], i['ID']) | |
| 1413 | |
| 13 | 1414 |
| 1415 def test_pilates(self): | |
| 1416 # "SCU failed error when accessing orthanc with osirix" by | |
| 1417 # Pilates Agentur (Mar 10, 2014 at 9:33 PM) | |
| 1418 i = UploadInstance(_REMOTE, 'PilatesArgenturGEUltrasoundOsiriX.dcm')['ID'] | |
| 1419 self.assertEqual(0, len(DoGet(_LOCAL, '/patients'))) | |
| 1420 j = DoPost(_REMOTE, '/modalities/orthanctest/store', str(i), 'text/plain') | |
| 1421 self.assertEqual(1, len(DoGet(_LOCAL, '/patients'))) | |
| 1422 | |
| 1423 | |
| 1424 def test_shared_tags(self): | |
| 1425 a = UploadInstance(_REMOTE, 'Knee/T1/IM-0001-0001.dcm')['ID'] | |
| 1426 b = UploadInstance(_REMOTE, 'Knee/T1/IM-0001-0002.dcm')['ID'] | |
| 1427 p = DoGet(_REMOTE, '/patients')[0] | |
| 1428 | |
| 1429 self.assertTrue('0010,0010' in DoGet(_REMOTE, '/patients/%s/shared-tags' % p)) | |
| 1430 self.assertTrue('PatientName' in DoGet(_REMOTE, '/patients/%s/shared-tags?simplify' % p)) | |
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1431 self.assertTrue('0010,0010' in DoGet(_REMOTE, '/patients/%s/shared-tags?short' % p)) |
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1432 |
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1433 self.assertEqual('KNEE', DoGet(_REMOTE, '/patients/%s/shared-tags' % p)['0010,0010']['Value']) |
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1434 self.assertEqual('KNEE', DoGet(_REMOTE, '/patients/%s/shared-tags?simplify' % p)['PatientName']) |
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1435 self.assertEqual('KNEE', DoGet(_REMOTE, '/patients/%s/shared-tags?short' % p)['0010,0010']) |
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1436 |
| 13 | 1437 self.assertTrue('0008,1030' in DoGet(_REMOTE, '/patients/%s/shared-tags' % p)) |
| 1438 self.assertTrue('StudyDescription' in DoGet(_REMOTE, '/patients/%s/shared-tags?simplify' % p)) | |
| 1439 self.assertTrue('0008,103e' in DoGet(_REMOTE, '/patients/%s/shared-tags' % p)) | |
| 1440 self.assertTrue('SeriesDescription' in DoGet(_REMOTE, '/patients/%s/shared-tags?simplify' % p)) | |
| 1441 self.assertFalse('0008,0018' in DoGet(_REMOTE, '/patients/%s/shared-tags' % p)) | |
| 1442 self.assertFalse('SOPInstanceUID' in DoGet(_REMOTE, '/patients/%s/shared-tags?simplify' % p)) | |
| 1443 | |
| 1444 self.assertTrue('0008,0018' in DoGet(_REMOTE, '/instances/%s/tags' % a)) | |
| 1445 self.assertTrue('SOPInstanceUID' in DoGet(_REMOTE, '/instances/%s/tags?simplify' % a)) | |
| 1446 | |
| 1447 | |
| 1448 def test_modules(self): | |
| 1449 a = UploadInstance(_REMOTE, 'Knee/T1/IM-0001-0001.dcm')['ID'] | |
| 1450 p = DoGet(_REMOTE, '/patients')[0] | |
| 1451 s = DoGet(_REMOTE, '/studies')[0] | |
| 1452 t = DoGet(_REMOTE, '/series')[0] | |
| 1453 | |
| 1454 self.assertTrue('0010,0010' in DoGet(_REMOTE, '/patients/%s/module' % p)) | |
| 1455 self.assertTrue('PatientName' in DoGet(_REMOTE, '/patients/%s/module?simplify' % p)) | |
| 1456 self.assertTrue('0010,0010' in DoGet(_REMOTE, '/studies/%s/module-patient' % p)) | |
| 1457 self.assertTrue('PatientName' in DoGet(_REMOTE, '/studies/%s/module-patient?simplify' % p)) | |
| 1458 self.assertTrue('0008,1030' in DoGet(_REMOTE, '/studies/%s/module' % s)) | |
| 1459 self.assertTrue('StudyDescription' in DoGet(_REMOTE, '/studies/%s/module?simplify' % s)) | |
| 1460 self.assertTrue('0008,103e' in DoGet(_REMOTE, '/series/%s/module' % p)) | |
| 1461 self.assertTrue('SeriesDescription' in DoGet(_REMOTE, '/series/%s/module?simplify' % p)) | |
| 1462 self.assertTrue('0008,0018' in DoGet(_REMOTE, '/instances/%s/module' % a)) | |
| 1463 self.assertTrue('SOPInstanceUID' in DoGet(_REMOTE, '/instances/%s/module?simplify' % a)) | |
| 1464 | |
| 1465 | |
| 1466 def test_auto_directory(self): | |
| 1467 a = UploadInstance(_REMOTE, 'Knee/T1/IM-0001-0001.dcm')['ID'] | |
| 1468 self.assertTrue('now' in DoGet(_REMOTE, '/tools')) | |
| 1469 self.assertTrue('dicom-conformance' in DoGet(_REMOTE, '/tools')) | |
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1470 self.assertTrue('invalidate-tags' in DoGet(_REMOTE, '/tools')) |
| 13 | 1471 self.assertTrue(len(DoGet(_REMOTE, '/tools/dicom-conformance')) > 1000) |
| 1472 self.assertTrue('orthanctest' in DoGet(_REMOTE, '/modalities')) | |
| 1473 self.assertTrue('echo' in DoGet(_REMOTE, '/modalities/orthanctest')) | |
| 1474 self.assertTrue('find' in DoGet(_REMOTE, '/modalities/orthanctest')) | |
| 1475 self.assertTrue('find-instance' in DoGet(_REMOTE, '/modalities/orthanctest')) | |
| 1476 self.assertTrue('find-patient' in DoGet(_REMOTE, '/modalities/orthanctest')) | |
| 1477 self.assertTrue('find-series' in DoGet(_REMOTE, '/modalities/orthanctest')) | |
| 1478 self.assertTrue('find-study' in DoGet(_REMOTE, '/modalities/orthanctest')) | |
| 1479 self.assertTrue('store' in DoGet(_REMOTE, '/modalities/orthanctest')) | |
| 1480 self.assertTrue('store' in DoGet(_REMOTE, '/peers/peer')) | |
| 1481 self.assertTrue('matlab' in DoGet(_REMOTE, '/instances/%s/frames/0' % a)) | |
| 79 | 1482 self.assertTrue('raw' in DoGet(_REMOTE, '/instances/%s/frames/0' % a)) |
| 13 | 1483 self.assertRaises(Exception, lambda: DoGet(_REMOTE, '/tools/nope')) |
| 28 | 1484 self.assertRaises(Exception, lambda: DoGet(_REMOTE, '/nope')) |
| 1485 self.assertRaises(Exception, lambda: DoGet(_REMOTE, '/nope/nope.html')) | |
| 1486 self.assertEqual(404, DoGetRaw(_REMOTE, '/nope')[0].status) | |
| 1487 self.assertEqual(404, DoGetRaw(_REMOTE, '/nope/nope.html')[0].status) | |
| 13 | 1488 |
| 1489 | |
| 1490 def test_echo(self): | |
| 1491 DoPost(_REMOTE, '/modalities/orthanctest/echo') | |
| 1492 | |
| 1493 | |
| 1494 def test_xml(self): | |
| 1495 json = DoGet(_REMOTE, '/tools', headers = { 'accept' : 'application/json' }) | |
| 1496 xml = minidom.parseString(DoGet(_REMOTE, '/tools', headers = { 'accept' : 'application/xml' })) | |
| 1497 items = xml.getElementsByTagName('root')[0].getElementsByTagName('item') | |
| 1498 self.assertEqual(len(items), len(json)) | |
| 1499 | |
| 1500 self.assertTrue('dicom-conformance' in json) | |
| 1501 | |
| 1502 ok = False | |
| 1503 for i in items: | |
| 1504 if i.childNodes[0].data == 'dicom-conformance': | |
| 1505 ok = True | |
| 1506 self.assertTrue(ok) | |
| 1507 | |
| 1508 | |
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1509 def test_googlecode_issue_16(self): |
| 13 | 1510 i = UploadInstance(_REMOTE, 'Issue16.dcm')['ID'] |
| 1511 t = DoGet(_REMOTE, '/instances/%s/tags?simplify' % i)['FrameIncrementPointer'] | |
| 1512 self.assertEqual('0018,1063', t) | |
| 1513 | |
| 1514 | |
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1515 def test_googlecode_issue_22(self): |
| 13 | 1516 s = UploadInstance(_REMOTE, 'Issue22.dcm')['ID'] |
| 1517 a = [ | |
| 1518 "f804691f62197040438f4627c6b994f1", # Frame 0 | |
| 1519 "c69eee9a51eea3e8611e82e578897254", | |
| 1520 "315666be83e2d0111c77bc0996d84901", | |
| 1521 "3e27aa959d911172c48a1436443c72b1", | |
| 1522 "958642c9e7e9d232d3869faff546058c", | |
| 1523 "5e7ea8e3e4230cae707d143481355c59", | |
| 1524 "eda37f83558d858a596175aed8b2ad47", | |
| 1525 "486713bd2895c4ecbe0e97715ac7f80a", | |
| 1526 "091ef729eb169e67da8a0faa9631f9a8", | |
| 1527 "5aa2b8c7ffe0a483efaa8e12417686ca", | |
| 1528 "e2f39e85896fe58876654b94cd0b5013", | |
| 1529 "6fd2129e4950abbe1be053bc814d5da8", | |
| 1530 "c3331a8ba7a757f3d423735ab7fa81f9", | |
| 1531 "746f808582156734dd6b6fdfd3a0b72c", | |
| 1532 "8075ea2b227a70c60ea6b7b75a6bb190", | |
| 1533 "806b8b3e300c615099c11a5ec23465aa", | |
| 1534 "7c836aa298ba6eef96434579af631a11", | |
| 1535 "a0357dc9f4f72d73a885c33d7c287446", | |
| 1536 "f25ba3be1cc7d7fad95706adc199ea7d", | |
| 1537 "8b114c526b8cbed6cad8a3248b7b480c", | |
| 1538 "44e6670f127e612a2b4aa60a0d207698", | |
| 1539 "b8945f90fe02facf2ace24ca1ecbe0a5", | |
| 1540 "95c796c2fa8f59018b15cf2987b1f79b", | |
| 1541 "ce0a51ab30224205b44920221dc27351", # Frame 23 | |
| 1542 ] | |
| 1543 | |
| 1544 self.assertEqual(24, len(DoGet(_REMOTE, '/instances/%s/frames' % s))) | |
| 1545 self.assertRaises(Exception, lambda: DoGet(_REMOTE, '/instances/%s/frames/24/preview' % s)) | |
| 1546 | |
| 1547 for i in range(len(a)): | |
| 1548 self.assertEqual(a[i], ComputeMD5(DoGet(_REMOTE, '/instances/%s/frames/%d/preview' % (s, i)))) | |
| 1549 | |
| 1550 | |
|
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1551 def test_googlecode_issue_19(self): |
|
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1552 # This is an image with "YBR_FULL" photometric interpretation, it is not supported by Orthanc |
| 13 | 1553 # gdcmconv -i /home/jodogne/DICOM/GdcmDatabase/US_DataSet/HDI5000_US/3EAF5E01 -w -o Issue19.dcm |
| 1554 | |
| 1555 a = UploadInstance(_REMOTE, 'Issue19.dcm')['ID'] | |
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1556 self.assertRaises(Exception, lambda: DoGet(_REMOTE, '/instances/941ad3c8-05d05b88-560459f9-0eae0e20-6cddd533/preview')) |
| 13 | 1557 |
| 1558 | |
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1559 def test_googlecode_issue_37(self): |
| 13 | 1560 # Same test for issues 35 and 37. Fixed in Orthanc 0.9.1 |
| 1561 u = UploadInstance(_REMOTE, 'Beaufix/IM-0001-0001.dcm')['ID'] | |
| 1562 | |
| 1563 a = DoPost(_REMOTE, '/tools/find', { 'Level' : 'Series', | |
| 1564 'CaseSensitive' : True, | |
| 1565 'Query' : { 'StationName' : 'SMR4-MP3' }}) | |
| 1566 self.assertEqual(1, len(a)) | |
| 14 | 1567 |
| 1568 | |
| 1569 def test_rest_find(self): | |
| 1570 # Upload 8 instances | |
| 1571 for i in range(2): | |
| 1572 UploadInstance(_REMOTE, 'Brainix/Flair/IM-0001-000%d.dcm' % (i + 1)) | |
| 1573 UploadInstance(_REMOTE, 'Brainix/Epi/IM-0001-000%d.dcm' % (i + 1)) | |
| 1574 UploadInstance(_REMOTE, 'Knee/T1/IM-0001-000%d.dcm' % (i + 1)) | |
| 1575 UploadInstance(_REMOTE, 'Knee/T2/IM-0001-000%d.dcm' % (i + 1)) | |
| 1576 | |
| 1577 a = DoPost(_REMOTE, '/tools/find', { 'Level' : 'Patient', | |
| 1578 'CaseSensitive' : False, | |
| 1579 'Query' : { 'PatientName' : '*n*' }}) | |
| 1580 self.assertEqual(2, len(a)) | |
| 1581 | |
| 1582 a = DoPost(_REMOTE, '/tools/find', { 'Level' : 'Patient', | |
| 1583 'CaseSensitive' : True, | |
| 1584 'Query' : { 'PatientName' : '*n*' }}) | |
| 1585 self.assertEqual(0, len(a)) | |
| 1586 | |
| 1587 a = DoPost(_REMOTE, '/tools/find', { 'Expand' : True, | |
| 1588 'Level' : 'Patient', | |
| 1589 'CaseSensitive' : False, | |
| 1590 'Query' : { 'PatientName' : '*ne*' }}) | |
| 1591 self.assertEqual(1, len(a)) | |
| 1592 self.assertEqual('20080822', a[0]['MainDicomTags']['PatientBirthDate']) | |
| 1593 | |
| 1594 a = DoPost(_REMOTE, '/tools/find', { 'Level' : 'Patient', | |
| 1595 'CaseSensitive' : True, | |
| 1596 'Query' : { 'PatientName' : '*ne*' }}) | |
| 1597 self.assertEqual(0, len(a)) | |
| 1598 | |
| 1599 a = DoPost(_REMOTE, '/tools/find', { 'Level' : 'Study', | |
| 1600 'CaseSensitive' : True, | |
| 1601 'Query' : { 'PatientName' : '*NE*' }}) | |
| 1602 self.assertEqual(1, len(a)) | |
| 1603 | |
| 1604 a = DoPost(_REMOTE, '/tools/find', { 'Level' : 'Series', | |
| 1605 'CaseSensitive' : True, | |
| 1606 'Query' : { 'PatientName' : '*NE*' }}) | |
| 1607 self.assertEqual(2, len(a)) | |
| 1608 | |
| 1609 a = DoPost(_REMOTE, '/tools/find', { 'Level' : 'Instance', | |
| 1610 'CaseSensitive' : True, | |
| 1611 'Query' : { 'PatientName' : '*NE*' }}) | |
| 1612 self.assertEqual(4, len(a)) | |
| 1613 | |
| 1614 a = DoPost(_REMOTE, '/tools/find', { 'Level' : 'Patient', 'Query' : { }}) | |
| 1615 self.assertEqual(2, len(a)) | |
| 1616 | |
| 1617 a = DoPost(_REMOTE, '/tools/find', { 'Level' : 'Study', 'Query' : { }}) | |
| 1618 self.assertEqual(2, len(a)) | |
| 1619 | |
| 1620 a = DoPost(_REMOTE, '/tools/find', { 'Level' : 'Series', 'Query' : { }}) | |
| 1621 self.assertEqual(4, len(a)) | |
| 1622 | |
| 1623 a = DoPost(_REMOTE, '/tools/find', { 'Level' : 'Instance', 'Query' : { }}) | |
| 1624 self.assertEqual(8, len(a)) | |
| 1625 | |
| 1626 | |
| 1627 def test_rest_query_retrieve(self): | |
| 1628 self.assertEqual(0, len(DoGet(_REMOTE, '/patients'))) | |
| 1629 | |
| 1630 # Upload 8 instances | |
| 1631 for i in range(2): | |
| 1632 UploadInstance(_REMOTE, 'Brainix/Flair/IM-0001-000%d.dcm' % (i + 1)) | |
| 1633 UploadInstance(_REMOTE, 'Brainix/Epi/IM-0001-000%d.dcm' % (i + 1)) | |
| 1634 UploadInstance(_REMOTE, 'Knee/T1/IM-0001-000%d.dcm' % (i + 1)) | |
| 1635 UploadInstance(_REMOTE, 'Knee/T2/IM-0001-000%d.dcm' % (i + 1)) | |
| 1636 | |
| 1637 self.assertEqual(2, len(DoGet(_REMOTE, '/patients'))) | |
| 1638 for p in DoGet(_REMOTE, '/patients'): | |
| 1639 DoPost(_REMOTE, '/modalities/orthanctest/store', p) | |
| 1640 DoDelete(_REMOTE, '/patients/%s' % p) | |
| 1641 | |
| 1642 for q in DoGet(_REMOTE, '/queries'): | |
| 1643 DoDelete(_REMOTE, '/queries/%s' % q) | |
| 1644 | |
| 1645 self.assertEqual(0, len(DoGet(_REMOTE, '/patients'))) | |
| 1646 self.assertEqual(0, len(DoGet(_REMOTE, '/queries'))) | |
| 1647 a = DoPost(_REMOTE, '/modalities/orthanctest/query', { 'Level' : 'Series', | |
| 27 | 1648 'Query' : { |
| 1649 'PatientName' : '*NE*', | |
| 1650 'StudyDate' : '*', | |
| 1651 }})['ID'] | |
| 14 | 1652 self.assertEqual(1, len(DoGet(_REMOTE, '/queries'))) |
| 1653 | |
| 1654 b = DoGet(_REMOTE, '/queries/%s' % a) | |
| 1655 self.assertTrue('answers' in b) | |
| 1656 self.assertTrue('level' in b) | |
| 1657 self.assertTrue('modality' in b) | |
| 1658 self.assertTrue('query' in b) | |
| 1659 self.assertTrue('retrieve' in b) | |
| 1660 self.assertEqual('Series', DoGet(_REMOTE, '/queries/%s/level' % a)) | |
| 1661 self.assertEqual('orthanctest', DoGet(_REMOTE, '/queries/%s/modality' % a)) | |
| 1662 | |
| 1663 q = DoGet(_REMOTE, '/queries/%s/query?simplify' % a) | |
| 27 | 1664 self.assertEqual(2, len(q)) |
| 14 | 1665 self.assertTrue('PatientName' in q) |
| 27 | 1666 self.assertTrue('StudyDate' in q) |
| 14 | 1667 self.assertEqual('*NE*', q['PatientName']) |
| 27 | 1668 self.assertEqual('*', q['StudyDate']) |
| 14 | 1669 |
| 1670 self.assertEqual(2, len(DoGet(_REMOTE, '/queries/%s/answers' % a))) | |
| 1671 | |
| 1672 s = DoGet(_REMOTE, '/queries/%s/answers/0' % a) | |
| 1673 self.assertTrue('content' in s) | |
| 1674 self.assertTrue('retrieve' in s) | |
| 1675 | |
| 1676 s = DoGet(_REMOTE, '/queries/%s/answers/0/content?simplify' % a) | |
| 1677 self.assertEqual('887', s['PatientID']) | |
| 1678 self.assertEqual('2.16.840.1.113669.632.20.121711.10000160881', s['StudyInstanceUID']) | |
| 1679 | |
| 1680 self.assertEqual(0, len(DoGet(_REMOTE, '/patients'))) | |
| 1681 DoPost(_REMOTE, '/queries/%s/answers/0/retrieve' % a, 'ORTHANC') | |
| 1682 self.assertEqual(1, len(DoGet(_REMOTE, '/patients'))) | |
| 1683 self.assertEqual(1, len(DoGet(_REMOTE, '/studies'))) | |
| 1684 self.assertEqual(1, len(DoGet(_REMOTE, '/series'))) | |
| 1685 self.assertEqual(2, len(DoGet(_REMOTE, '/instances'))) | |
| 1686 | |
| 112 | 1687 DoPost(_REMOTE, '/queries/%s/answers/1/retrieve' % a, 'ORTHANC', 'application/json') # make sure the issue #36 is fixed (query/retrieve Rest API: /retrieve route shall accept application/json content type) |
| 14 | 1688 self.assertEqual(1, len(DoGet(_REMOTE, '/patients'))) |
| 1689 self.assertEqual(1, len(DoGet(_REMOTE, '/studies'))) | |
| 1690 self.assertEqual(2, len(DoGet(_REMOTE, '/series'))) | |
| 1691 self.assertEqual(4, len(DoGet(_REMOTE, '/instances'))) | |
| 1692 | |
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1693 # New in Orthanc 1.4.3 |
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1694 s = DoGet(_REMOTE, '/queries/%s/answers?expand&simplify' % a) |
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1695 self.assertEqual(2, len(s)) |
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1696 for i in range(2): |
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1697 self.assertEqual('SERIES', s[i]['QueryRetrieveLevel']) |
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1698 self.assertEqual('887', s[i]['PatientID']) |
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1699 self.assertEqual('2.16.840.1.113669.632.20.121711.10000160881', s[i]['StudyInstanceUID']) |
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1700 |
| 14 | 1701 DoDelete(_REMOTE, '/queries/%s' % a) |
| 1702 self.assertEqual(0, len(DoGet(_REMOTE, '/queries'))) | |
| 1703 | |
| 1704 | |
| 1705 def test_parent(self): | |
| 1706 u = UploadInstance(_REMOTE, 'DummyCT.dcm')['ID'] | |
| 1707 patient = '6816cb19-844d5aee-85245eba-28e841e6-2414fae2' | |
| 1708 study = 'b9c08539-26f93bde-c81ab0d7-bffaf2cb-a4d0bdd0' | |
| 1709 series = 'f2635388-f01d497a-15f7c06b-ad7dba06-c4c599fe' | |
| 1710 instance = '66a662ce-7430e543-bad44d47-0dc5a943-ec7a538d' | |
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1711 self.assertEqual(instance, u) |
| 14 | 1712 |
| 1713 a = DoGet(_REMOTE, '/studies/%s/patient' % study) | |
| 1714 self.assertEqual('Patient', a['Type']) | |
| 1715 self.assertEqual(patient, a['ID']) | |
| 1716 | |
| 1717 a = DoGet(_REMOTE, '/series/%s/patient' % series) | |
| 1718 self.assertEqual('Patient', a['Type']) | |
| 1719 self.assertEqual(patient, a['ID']) | |
| 1720 | |
| 1721 a = DoGet(_REMOTE, '/series/%s/study' % series) | |
| 1722 self.assertEqual('Study', a['Type']) | |
| 1723 self.assertEqual(study, a['ID']) | |
| 1724 | |
| 1725 a = DoGet(_REMOTE, '/instances/%s/patient' % instance) | |
| 1726 self.assertEqual('Patient', a['Type']) | |
| 1727 self.assertEqual(patient, a['ID']) | |
| 1728 | |
| 1729 a = DoGet(_REMOTE, '/instances/%s/study' % instance) | |
| 1730 self.assertEqual('Study', a['Type']) | |
| 1731 self.assertEqual(study, a['ID']) | |
| 1732 | |
| 1733 a = DoGet(_REMOTE, '/instances/%s/series' % instance) | |
| 1734 self.assertEqual('Series', a['Type']) | |
| 1735 self.assertEqual(series, a['ID']) | |
| 1736 | |
| 1737 | |
| 1738 def test_shanon(self): | |
| 1739 def Anonymize(instance, replacements = {}): | |
| 119 | 1740 return DoPost(_REMOTE, '/instances/%s/anonymize' % instance, { |
| 1741 'Replace' : replacements, | |
| 1742 'Force' : True, | |
| 1743 }, 'application/json') | |
| 14 | 1744 |
| 1745 self.assertEqual(0, len(DoGet(_REMOTE, '/instances'))) | |
| 1746 u = UploadInstance(_REMOTE, 'DummyCT.dcm')['ID'] | |
| 1747 self.assertEqual(1, len(DoGet(_REMOTE, '/instances'))) | |
| 1748 | |
| 1749 tags = [ 'PatientID', 'StudyInstanceUID', 'SeriesInstanceUID', 'SOPInstanceUID', 'DeidentificationMethod' ] | |
| 1750 ids = [ 'ozp00SjY2xG', | |
| 1751 '1.2.840.113619.2.176.2025.1499492.7391.1171285944.390', | |
| 1752 '1.2.840.113619.2.176.2025.1499492.7391.1171285944.394', | |
| 1753 '1.2.840.113619.2.176.2025.1499492.7040.1171286242.109' ] | |
| 1754 | |
| 1755 a = ExtractDicomTags(Anonymize(u), tags) | |
| 1756 for i in range(4): | |
| 1757 self.assertNotEqual(ids[i], a[i]) | |
| 1758 self.assertTrue(a[4].startswith('Orthanc')) | |
| 1759 | |
| 1760 a = ExtractDicomTags(Anonymize(u, { 'PatientName' : 'toto' }), tags) | |
| 1761 for i in range(4): | |
| 1762 self.assertNotEqual(ids[i], a[i]) | |
| 1763 self.assertFalse(a[4].startswith('Orthanc')) | |
| 1764 | |
| 1765 a = ExtractDicomTags(Anonymize(u, { 'SOPInstanceUID' : 'instance' }), tags) | |
| 1766 self.assertEqual('instance', a[3]) | |
| 1767 self.assertFalse(a[4].startswith('Orthanc')) | |
| 1768 | |
| 1769 a = ExtractDicomTags(Anonymize(u, { 'SeriesInstanceUID' : 'series' }), tags) | |
| 1770 self.assertEqual('series', a[2]) | |
| 1771 self.assertFalse(a[4].startswith('Orthanc')) | |
| 1772 | |
| 1773 a = ExtractDicomTags(Anonymize(u, { 'StudyInstanceUID' : 'study' }), tags) | |
| 1774 self.assertEqual('study', a[1]) | |
| 1775 self.assertFalse(a[4].startswith('Orthanc')) | |
| 1776 | |
| 1777 a = ExtractDicomTags(Anonymize(u, { 'PatientID' : 'patient' }), tags) | |
| 1778 self.assertEqual('patient', a[0]) | |
| 1779 self.assertFalse(a[4].startswith('Orthanc')) | |
| 1780 | |
| 1781 a = ExtractDicomTags(Anonymize(u, { 'PatientID' : 'patient', | |
| 1782 'StudyInstanceUID' : 'study', | |
| 1783 'SeriesInstanceUID' : 'series', | |
| 1784 'SOPInstanceUID' : 'instance' }), tags) | |
| 1785 self.assertEqual('patient', a[0]) | |
| 1786 self.assertFalse(a[4].startswith('Orthanc')) | |
| 1787 | |
| 1788 self.assertEqual(1, len(DoGet(_REMOTE, '/instances'))) | |
| 1789 | |
| 1790 | |
| 1791 def test_shanon_2(self): | |
| 1792 def Modify(instance, replacements = {}): | |
| 119 | 1793 return DoPost(_REMOTE, '/instances/%s/modify' % instance, { |
| 1794 'Replace' : replacements, | |
| 1795 'Force': True, | |
| 1796 }, 'application/json') | |
| 14 | 1797 |
| 1798 self.assertEqual(0, len(DoGet(_REMOTE, '/instances'))) | |
| 1799 u = UploadInstance(_REMOTE, 'DummyCT.dcm')['ID'] | |
| 1800 self.assertEqual(1, len(DoGet(_REMOTE, '/instances'))) | |
| 1801 | |
| 1802 tags = [ 'PatientID', 'StudyInstanceUID', 'SeriesInstanceUID', 'SOPInstanceUID', 'DeidentificationMethod' ] | |
| 1803 ids = [ 'ozp00SjY2xG', | |
| 1804 '1.2.840.113619.2.176.2025.1499492.7391.1171285944.390', | |
| 1805 '1.2.840.113619.2.176.2025.1499492.7391.1171285944.394', | |
| 1806 '1.2.840.113619.2.176.2025.1499492.7040.1171286242.109' ] | |
| 1807 | |
| 1808 a = ExtractDicomTags(Modify(u), tags) | |
| 1809 self.assertEqual(ids[0], a[0]) | |
| 1810 self.assertEqual(ids[1], a[1]) | |
| 1811 self.assertEqual(ids[2], a[2]) | |
| 1812 self.assertNotEqual(ids[3], a[3]) | |
| 1813 self.assertEqual(0, len(a[4])) | |
| 1814 | |
| 1815 a = ExtractDicomTags(Modify(u, { 'SOPInstanceUID' : 'instance' }), tags) | |
| 1816 self.assertEqual(ids[0], a[0]) | |
| 1817 self.assertEqual(ids[1], a[1]) | |
| 1818 self.assertEqual(ids[2], a[2]) | |
| 1819 self.assertEqual('instance', a[3]) | |
| 1820 | |
| 1821 a = ExtractDicomTags(Modify(u, { 'SeriesInstanceUID' : 'series' }), tags) | |
| 1822 self.assertEqual(ids[0], a[0]) | |
| 1823 self.assertEqual(ids[1], a[1]) | |
| 1824 self.assertEqual('series', a[2]) | |
| 1825 self.assertNotEqual(ids[3], a[3]) | |
| 1826 | |
| 1827 a = ExtractDicomTags(Modify(u, { 'StudyInstanceUID' : 'study' }), tags) | |
| 1828 self.assertEqual(ids[0], a[0]) | |
| 1829 self.assertEqual('study', a[1]) | |
| 1830 self.assertNotEqual(ids[2], a[2]) | |
| 1831 self.assertNotEqual(ids[3], a[3]) | |
| 1832 | |
| 1833 a = ExtractDicomTags(Modify(u, { 'PatientID' : 'patient' }), tags) | |
| 1834 self.assertEqual('patient', a[0]) | |
| 1835 self.assertNotEqual(ids[1], a[1]) | |
| 1836 self.assertNotEqual(ids[2], a[2]) | |
| 1837 self.assertNotEqual(ids[3], a[3]) | |
| 1838 | |
| 1839 a = ExtractDicomTags(Modify(u, { 'PatientID' : 'patient', | |
| 1840 'StudyInstanceUID' : 'study', | |
| 1841 'SeriesInstanceUID' : 'series', | |
| 1842 'SOPInstanceUID' : 'instance' }), tags) | |
| 1843 self.assertEqual('patient', a[0]) | |
| 1844 self.assertEqual('study', a[1]) | |
| 1845 self.assertEqual('series', a[2]) | |
| 1846 self.assertEqual('instance', a[3]) | |
| 1847 | |
| 1848 self.assertEqual(1, len(DoGet(_REMOTE, '/instances'))) | |
| 1849 | |
| 1850 | |
| 1851 def test_instances_tags(self): | |
| 1852 a = UploadInstance(_REMOTE, 'Knee/T1/IM-0001-0001.dcm')['ID'] | |
| 1853 b = UploadInstance(_REMOTE, 'Knee/T2/IM-0001-0001.dcm')['ID'] | |
| 1854 #a = UploadInstance(_REMOTE, 'Cardiac/MR.X.1.2.276.0.7230010.3.1.4.2831157719.2256.1336386937.676343')['ID'] | |
| 1855 #b = UploadInstance(_REMOTE, 'Cardiac/MR.X.1.2.276.0.7230010.3.1.4.2831157719.2256.1336386925.676329')['ID'] | |
| 1856 | |
| 1857 i = DoGet(_REMOTE, '/patients/%s/instances-tags?simplify' % DoGet(_REMOTE, '/patients')[0]) | |
| 1858 self.assertEqual(2, len(i)) | |
| 1859 self.assertEqual('887', i[i.keys()[0]]['PatientID']) | |
| 1860 self.assertEqual('887', i[i.keys()[1]]['PatientID']) | |
| 1861 | |
| 1862 i = DoGet(_REMOTE, '/patients/%s/instances-tags?simplify' % DoGet(_REMOTE, '/studies')[0]) | |
| 1863 self.assertEqual(2, len(i)) | |
| 1864 self.assertEqual('887', i[i.keys()[0]]['PatientID']) | |
| 1865 self.assertEqual('887', i[i.keys()[1]]['PatientID']) | |
| 1866 | |
| 1867 self.assertEqual(2, len(DoGet(_REMOTE, '/series'))) | |
| 1868 i = DoGet(_REMOTE, '/patients/%s/instances-tags?simplify' % DoGet(_REMOTE, '/series')[0]) | |
| 1869 self.assertEqual(1, len(i)) | |
| 1870 self.assertEqual('887', i[i.keys()[0]]['PatientID']) | |
| 1871 | |
| 1872 i = DoGet(_REMOTE, '/patients/%s/instances-tags?simplify' % DoGet(_REMOTE, '/series')[1]) | |
| 1873 self.assertEqual(1, len(i)) | |
| 1874 self.assertEqual('887', i[i.keys()[0]]['PatientID']) | |
| 1875 | |
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1876 i = DoGet(_REMOTE, '/patients/%s/instances-tags?short' % DoGet(_REMOTE, '/series')[1]) |
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1877 self.assertEqual(1, len(i)) |
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1878 self.assertEqual('887', i[i.keys()[0]]['0010,0020']) |
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1879 |
| 14 | 1880 |
| 1881 def test_lookup(self): | |
| 1882 a = DoPost(_REMOTE, '/tools/lookup', 'ozp00SjY2xG') | |
| 1883 self.assertEqual(0, len(a)) | |
| 1884 | |
| 1885 UploadInstance(_REMOTE, 'DummyCT.dcm') | |
| 1886 | |
| 1887 a = DoPost(_REMOTE, '/tools/lookup', 'ozp00SjY2xG') | |
| 1888 self.assertEqual(1, len(a)) | |
| 1889 self.assertEqual('Patient', a[0]['Type']) | |
| 1890 self.assertEqual('6816cb19-844d5aee-85245eba-28e841e6-2414fae2', a[0]['ID']) | |
| 1891 self.assertEqual('/patients/%s' % a[0]['ID'], a[0]['Path']) | |
| 1892 | |
| 1893 a = DoPost(_REMOTE, '/tools/lookup', '1.2.840.113619.2.176.2025.1499492.7391.1171285944.390') | |
| 1894 self.assertEqual(1, len(a)) | |
| 1895 self.assertEqual('Study', a[0]['Type']) | |
| 1896 self.assertEqual('b9c08539-26f93bde-c81ab0d7-bffaf2cb-a4d0bdd0', a[0]['ID']) | |
| 1897 self.assertEqual('/studies/%s' % a[0]['ID'], a[0]['Path']) | |
| 1898 | |
| 1899 a = DoPost(_REMOTE, '/tools/lookup', '1.2.840.113619.2.176.2025.1499492.7391.1171285944.394') | |
| 1900 self.assertEqual(1, len(a)) | |
| 1901 self.assertEqual('Series', a[0]['Type']) | |
| 1902 self.assertEqual('f2635388-f01d497a-15f7c06b-ad7dba06-c4c599fe', a[0]['ID']) | |
| 1903 self.assertEqual('/series/%s' % a[0]['ID'], a[0]['Path']) | |
| 1904 | |
| 1905 a = DoPost(_REMOTE, '/tools/lookup', '1.2.840.113619.2.176.2025.1499492.7040.1171286242.109') | |
| 1906 self.assertEqual(1, len(a)) | |
| 1907 self.assertEqual('Instance', a[0]['Type']) | |
| 1908 self.assertEqual('66a662ce-7430e543-bad44d47-0dc5a943-ec7a538d', a[0]['ID']) | |
| 1909 self.assertEqual('/instances/%s' % a[0]['ID'], a[0]['Path']) | |
| 1910 | |
| 1911 DropOrthanc(_REMOTE) | |
| 1912 a = DoPost(_REMOTE, '/tools/lookup', '3113719P') | |
| 1913 self.assertEqual(0, len(a)) | |
| 1914 | |
| 15 | 1915 |
| 1916 def test_autorouting(self): | |
| 1917 knee1 = 'Knee/T1/IM-0001-0001.dcm' | |
| 1918 knee2 = 'Knee/T2/IM-0001-0002.dcm' | |
| 1919 other = 'Brainix/Flair/IM-0001-0001.dcm' | |
| 1920 | |
| 1921 # Check that this version is >= 0.8.0 | |
| 1922 self.assertTrue(IsDefinedInLua(_REMOTE, '_InitializeJob')) | |
| 1923 self.assertTrue('orthanctest' in DoGet(_REMOTE, '/modalities')) | |
| 1924 | |
| 1925 UploadInstance(_REMOTE, knee1) | |
| 1926 self.assertEqual(0, len(DoGet(_LOCAL, '/instances'))) | |
| 1927 | |
| 1928 DropOrthanc(_REMOTE) | |
| 1929 DropOrthanc(_LOCAL) | |
| 174 | 1930 InstallLuaScriptFromPath(_REMOTE, 'Lua/Autorouting.lua') |
| 15 | 1931 UploadInstance(_REMOTE, knee1) |
| 1932 UploadInstance(_REMOTE, knee2) | |
| 1933 UploadInstance(_REMOTE, other) | |
| 1934 WaitEmpty(_REMOTE) | |
| 174 | 1935 UninstallLuaCallbacks(_REMOTE) |
| 15 | 1936 self.assertEqual(3, len(DoGet(_LOCAL, '/instances'))) |
| 1937 | |
| 1938 DropOrthanc(_REMOTE) | |
| 1939 DropOrthanc(_LOCAL) | |
| 174 | 1940 InstallLuaScriptFromPath(_REMOTE, 'Lua/AutoroutingConditional.lua') |
| 15 | 1941 UploadInstance(_REMOTE, knee1) |
| 1942 UploadInstance(_REMOTE, knee2) | |
| 1943 UploadInstance(_REMOTE, other) | |
| 1944 WaitEmpty(_REMOTE) | |
| 174 | 1945 UninstallLuaCallbacks(_REMOTE) |
| 15 | 1946 self.assertEqual(2, len(DoGet(_LOCAL, '/instances'))) |
| 1947 | |
| 1948 DropOrthanc(_REMOTE) | |
| 1949 DropOrthanc(_LOCAL) | |
| 174 | 1950 InstallLuaScriptFromPath(_REMOTE, 'Lua/AutoroutingModification.lua') |
| 15 | 1951 UploadInstance(_REMOTE, knee1) |
| 1952 WaitEmpty(_REMOTE) | |
| 174 | 1953 UninstallLuaCallbacks(_REMOTE) |
| 15 | 1954 i = DoGet(_LOCAL, '/instances') |
| 1955 self.assertEqual(1, len(i)) | |
| 1956 | |
| 1957 with tempfile.NamedTemporaryFile(delete = True) as f: | |
| 1958 f.write(DoGet(_LOCAL, '/instances/%s/file' % i[0])) | |
| 1959 f.flush() | |
| 45 | 1960 routed = subprocess.check_output([ FindExecutable('dcm2xml'), f.name ]) |
| 15 | 1961 self.assertEqual('My Medical Device', re.search('"StationName">(.*?)<', routed).group(1).strip()) |
| 1962 self.assertEqual(None, re.search('"MilitaryRank"', routed)) | |
| 1963 self.assertEqual(None, re.search('"0051,0010"', routed)) # A private tag | |
| 17 | 1964 |
| 1965 | |
| 1966 def test_storescu_rf(self): | |
| 1967 i = UploadInstance(_REMOTE, 'KarstenHilbertRF.dcm')['ID'] | |
| 1968 self.assertEqual(0, len(DoGet(_LOCAL, '/instances'))) | |
| 1969 j = DoPost(_REMOTE, '/modalities/orthanctest/store', str(i), 'text/plain') | |
| 1970 self.assertEqual(1, len(DoGet(_LOCAL, '/instances'))) | |
| 18 | 1971 |
| 1972 | |
| 1973 def test_anonymize_instance(self): | |
| 1974 def AnonymizeAndUpload(instanceId, parameters): | |
| 1975 return DoPost(_REMOTE, '/instances', DoPost(_REMOTE, '/instances/%s/anonymize' % instanceId, parameters, | |
| 1976 'application/json'), 'application/dicom')['ID'] | |
| 1977 | |
| 1978 def ModifyAndUpload(instanceId, parameters): | |
| 1979 return DoPost(_REMOTE, '/instances', DoPost(_REMOTE, '/instances/%s/modify' % instanceId, parameters, | |
| 1980 'application/json'), 'application/dicom')['ID'] | |
| 1981 | |
| 1982 a = UploadInstance(_REMOTE, 'PrivateMDNTags.dcm')['ID'] | |
| 1983 s1 = DoGet(_REMOTE, '/instances/%s/content/PatientName' % a) | |
| 1984 s2 = DoGet(_REMOTE, '/instances/%s/content/00e1-10c2' % a) # Some private tag | |
| 1985 s3 = DoGet(_REMOTE, '/instances/%s/content/StudyDescription' % a) | |
| 1986 s4 = DoGet(_REMOTE, '/instances/%s/content/SeriesDescription' % a) | |
| 1987 s5 = DoGet(_REMOTE, '/instances/%s/content/InstitutionName' % a) | |
| 1988 | |
| 1989 b = AnonymizeAndUpload(a, '{}') | |
| 1990 self.assertNotEqual(s1, DoGet(_REMOTE, '/instances/%s/content/PatientName' % b)) | |
| 1991 self.assertRaises(Exception, lambda: DoGet(_REMOTE, '/instances/%s/content/00e1-10c2' % b)) | |
| 1992 | |
| 1993 # Keep private tag (only OK since Orthanc 0.8.0) | |
| 1994 b = AnonymizeAndUpload(a, '{"Keep":["00e1-10c2"]}') | |
| 1995 self.assertNotEqual(s1, DoGet(_REMOTE, '/instances/%s/content/PatientName' % b)) | |
| 1996 self.assertEqual(s2, DoGet(_REMOTE, '/instances/%s/content/00e1-10c2' % b)) | |
| 1997 | |
| 1998 b = AnonymizeAndUpload(a, '{"Keep":["00e1,10c2","PatientName"]}') | |
| 1999 self.assertEqual(s1, DoGet(_REMOTE, '/instances/%s/content/PatientName' % b)) | |
| 2000 self.assertEqual(s2, DoGet(_REMOTE, '/instances/%s/content/00e1-10c2' % b)) | |
| 2001 | |
| 2002 b = AnonymizeAndUpload(a, '{"Keep":["PatientName"],"Replace":{"00e1,10c2":"Hello"}}') | |
| 2003 self.assertEqual(s1, DoGet(_REMOTE, '/instances/%s/content/PatientName' % b)) | |
| 2004 self.assertTrue(DoGet(_REMOTE, '/instances/%s/content/00e1-10c2' % b).startswith('Hello')) | |
| 2005 | |
| 2006 # Examples from the Wiki | |
|
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2007 b = AnonymizeAndUpload(a, '{"Replace":{"PatientName":"hello","0010-0020":"world"},"Keep":["StudyDescription", "SeriesDescription"],"KeepPrivateTags": true,"Force":true}') |
| 18 | 2008 self.assertEqual('hello', DoGet(_REMOTE, '/instances/%s/content/0010-0010' % b).strip()) |
| 2009 self.assertEqual('world', DoGet(_REMOTE, '/instances/%s/content/PatientID' % b).strip()) | |
| 2010 self.assertEqual(s3, DoGet(_REMOTE, '/instances/%s/content/0008,1030' % b)) | |
| 2011 self.assertEqual(s4, DoGet(_REMOTE, '/instances/%s/content/0008,103e' % b)) | |
| 2012 self.assertEqual(s4, DoGet(_REMOTE, '/instances/%s/content/0008-103E' % b)) | |
| 2013 self.assertEqual(s2, DoGet(_REMOTE, '/instances/%s/content/00e1-10c2' % b)) | |
| 2014 DoGet(_REMOTE, '/instances/%s/content/InstitutionName' % a) | |
| 2015 self.assertRaises(Exception, lambda: DoGet(_REMOTE, '/instances/%s/content/InstitutionName' % b)) | |
| 2016 | |
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2017 b = ModifyAndUpload(a, '{"Replace":{"PatientName":"hello","PatientID":"world"},"Remove":["InstitutionName"],"RemovePrivateTags": true,"Force":true}') |
| 18 | 2018 self.assertEqual('hello', DoGet(_REMOTE, '/instances/%s/content/0010-0010' % b).strip()) |
| 2019 self.assertEqual('world', DoGet(_REMOTE, '/instances/%s/content/PatientID' % b).strip()) | |
| 2020 self.assertEqual(s3, DoGet(_REMOTE, '/instances/%s/content/0008,1030' % b)) | |
| 2021 self.assertEqual(s4, DoGet(_REMOTE, '/instances/%s/content/0008,103e' % b)) | |
| 2022 self.assertRaises(Exception, lambda: DoGet(_REMOTE, '/instances/%s/content/00e1-10c2' % b)) | |
| 2023 self.assertRaises(Exception, lambda: DoGet(_REMOTE, '/instances/%s/content/InstitutionName' % b)) | |
| 2024 | |
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2025 b = ModifyAndUpload(a, '{"Replace":{"PatientName":"hello","PatientID":"world"},"Force":true}') |
| 18 | 2026 self.assertEqual('hello', DoGet(_REMOTE, '/instances/%s/content/0010-0010' % b).strip()) |
| 2027 self.assertEqual('world', DoGet(_REMOTE, '/instances/%s/content/PatientID' % b).strip()) | |
| 2028 self.assertEqual(s2, DoGet(_REMOTE, '/instances/%s/content/00e1,10c2' % b)) | |
| 2029 self.assertEqual(s3, DoGet(_REMOTE, '/instances/%s/content/0008,1030' % b)) | |
| 2030 self.assertEqual(s4, DoGet(_REMOTE, '/instances/%s/content/0008-103E' % b)) | |
| 2031 self.assertEqual(s5, DoGet(_REMOTE, '/instances/%s/content/InstitutionName' % b)) | |
| 2032 | |
| 2033 | |
| 2034 # Test modify non-existing | |
| 2035 i = DoPost(_REMOTE, '/tools/create-dicom', | |
| 2036 json.dumps({ | |
| 2037 'PatientName' : 'Jodogne', | |
| 2038 'Modality' : 'CT', | |
| 2039 }))['ID'] | |
| 2040 | |
| 2041 self.assertEqual('Jodogne', DoGet(_REMOTE, '/instances/%s/content/PatientName' % i).strip()) | |
| 2042 self.assertRaises(Exception, lambda: DoGet(_REMOTE, '/instances/%s/content/StudyDescription' % i)) | |
| 2043 self.assertEqual('CT', DoGet(_REMOTE, '/instances/%s/content/Modality' % i).strip()) | |
| 2044 | |
| 2045 b = ModifyAndUpload(i, '{"Replace":{"StudyDescription":"hello","Modality":"world"}}') | |
| 2046 self.assertEqual('Jodogne', DoGet(_REMOTE, '/instances/%s/content/PatientName' % b).strip()) | |
| 2047 self.assertEqual('hello', DoGet(_REMOTE, '/instances/%s/content/StudyDescription' % b).strip()) | |
| 2048 self.assertEqual('world', DoGet(_REMOTE, '/instances/%s/content/Modality' % b).strip()) | |
| 2049 | |
|
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2050 |
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2051 def test_incoming_jpeg(self): |
|
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2052 def storescu(image, acceptUnknownSopClassUid): |
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2053 if acceptUnknownSopClassUid: |
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2054 tmp = [ '-xf', GetDatabasePath('UnknownSopClassUid.cfg'), 'Default' ] |
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2055 else: |
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2056 tmp = [ '-xs' ] |
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2057 |
|
21
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2058 with open(os.devnull, 'w') as FNULL: |
|
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2059 subprocess.check_call([ FindExecutable('storescu') ] + tmp + |
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2060 [ _REMOTE['Server'], str(_REMOTE['DicomPort']), |
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2061 GetDatabasePath(image) ], |
|
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2062 stderr = FNULL) |
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2063 |
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2064 self.assertEqual(0, len(DoGet(_REMOTE, '/patients'))) |
| 174 | 2065 InstallLuaScriptFromPath(_REMOTE, 'Lua/TransferSyntaxDisable.lua') |
|
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2066 self.assertRaises(Exception, lambda: storescu('Knix/Loc/IM-0001-0001.dcm', False)) |
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2067 self.assertRaises(Exception, lambda: storescu('UnknownSopClassUid.dcm', True)) |
|
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2068 self.assertEqual(0, len(DoGet(_REMOTE, '/patients'))) |
| 174 | 2069 InstallLuaScriptFromPath(_REMOTE, 'Lua/TransferSyntaxEnable.lua') |
|
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2070 DoPost(_REMOTE, '/tools/execute-script', "print('All special transfer syntaxes are now accepted')") |
|
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2071 storescu('Knix/Loc/IM-0001-0001.dcm', False) |
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2072 storescu('UnknownSopClassUid.dcm', True) |
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2073 self.assertEqual(2, len(DoGet(_REMOTE, '/patients'))) |
|
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2074 |
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2075 |
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2076 def test_storescu_jpeg(self): |
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2077 self.assertEqual(0, len(DoGet(_REMOTE, '/exports')['Exports'])) |
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2078 |
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2079 knixStudy = 'b9c08539-26f93bde-c81ab0d7-bffaf2cb-a4d0bdd0' |
| 64 | 2080 i = UploadInstance(_REMOTE, 'Knix/Loc/IM-0001-0001.dcm')['ID'] |
| 2081 | |
| 2082 # This is JPEG lossless | |
|
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2083 self.assertEqual('1.2.840.10008.1.2.4.70', DoGet(_REMOTE, '/instances/%s/header' % i)['0002,0010']['Value']) |
| 64 | 2084 self.assertEqual('1.2.840.10008.1.2.4.70', DoGet(_REMOTE, '/instances/%s/header?simplify' % i)['TransferSyntaxUID']) |
|
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2085 self.assertEqual('1.2.840.10008.1.2.4.70', DoGet(_REMOTE, '/instances/%s/header?short' % i)['0002,0010']) |
| 64 | 2086 |
|
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2087 UploadInstance(_REMOTE, 'Knix/Loc/IM-0001-0002.dcm') |
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2088 UploadInstance(_REMOTE, 'Knix/Loc/IM-0001-0003.dcm') |
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2089 |
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2090 a = UploadInstance(_REMOTE, 'Brainix/Flair/IM-0001-0001.dcm')['ID'] |
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2091 b = UploadInstance(_REMOTE, 'ColorTestImageJ.dcm')['ID'] |
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2092 self.assertEqual(0, len(DoGet(_LOCAL, '/instances'))) |
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2093 DoPost(_REMOTE, '/modalities/orthanctest/store', [ knixStudy, a, b ]) |
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2094 self.assertEqual(5, len(DoGet(_LOCAL, '/instances'))) |
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2095 |
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2096 self.assertEqual(3, len(DoGet(_REMOTE, '/exports')['Exports'])) |
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2097 |
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2098 DropOrthanc(_REMOTE) |
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2099 self.assertEqual(0, len(DoGet(_REMOTE, '/exports')['Exports'])) |
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2100 |
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2101 |
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2102 def test_pixel_data(self): |
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2103 jpeg = UploadInstance(_REMOTE, 'Knix/Loc/IM-0001-0001.dcm')['ID'] |
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2104 color = UploadInstance(_REMOTE, 'ColorTestImageJ.dcm')['ID'] |
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2105 phenix = UploadInstance(_REMOTE, 'Phenix/IM-0001-0001.dcm')['ID'] |
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2106 |
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2107 phenixSize = 358 * 512 * 2 |
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2108 colorSize = 1000 * 1000 * 3 |
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2109 jpegSize = 51918 |
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2110 |
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2111 self.assertEqual(1, len(DoGet(_REMOTE, '/instances/%s/content/7fe0-0010' % phenix))) |
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2112 self.assertEqual(1, len(DoGet(_REMOTE, '/instances/%s/content/7fe0-0010' % color))) |
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2113 self.assertEqual(2, len(DoGet(_REMOTE, '/instances/%s/content/7fe0-0010' % jpeg))) |
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2114 |
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2115 self.assertEqual(0, len(DoGet(_REMOTE, '/instances/%s/content/7fe0-0010/0' % jpeg))) |
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2116 self.assertEqual(jpegSize, len(DoGet(_REMOTE, '/instances/%s/content/7fe0-0010/1' % jpeg))) |
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2117 |
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2118 self.assertEqual(phenixSize, len(DoGet(_REMOTE, '/instances/%s/content/7fe0-0010/0' % phenix))) |
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2119 self.assertEqual(colorSize, len(DoGet(_REMOTE, '/instances/%s/content/7fe0-0010/0' % color))) |
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2120 |
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2121 |
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2122 def test_decode_brainix(self): |
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|
2123 brainix = [ |
|
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|
2124 UploadInstance(_REMOTE, 'Brainix/Epi/IM-0001-0001.dcm')['ID'], # (*) |
|
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diff
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|
2125 UploadInstance(_REMOTE, 'Formats/JpegLossless.dcm')['ID'], # JPEG-LS, same as (*) (since Orthanc 0.7.6) |
|
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|
2126 UploadInstance(_REMOTE, 'Formats/Jpeg.dcm')['ID'], # JPEG, same as (*) (since Orthanc 0.7.6) |
|
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diff
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|
2127 ] |
|
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diff
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|
2128 h = '6fb11b932d535c2be04beabd99793ff8' |
|
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diff
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|
2129 maxValue = 426.0 |
|
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diff
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|
2130 |
|
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diff
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|
2131 truth = Image.open(GetDatabasePath('Formats/Brainix.png')) |
|
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|
2132 for i in brainix: |
|
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changeset
|
2133 self.AssertSameImages(truth.getdata(), '/instances/%s/image-int16' % i) |
|
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diff
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|
2134 self.AssertSameImages(truth.getdata(), '/instances/%s/image-uint16' % i) |
|
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diff
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|
2135 |
|
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|
2136 truth2 = map(lambda x: min(255, x), truth.getdata()) |
|
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diff
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|
2137 for i in brainix: |
|
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tests of image decoding
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diff
changeset
|
2138 self.AssertSameImages(truth2, '/instances/%s/image-uint8' % i) |
|
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parents:
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diff
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|
2139 |
|
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changeset
|
2140 truth2 = map(lambda x: x * 255.0 / maxValue, truth.getdata()) |
|
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diff
changeset
|
2141 for i in brainix: |
|
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changeset
|
2142 self.AssertSameImages(truth2, '/instances/%s/preview' % i) |
|
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diff
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|
2143 |
|
2a29bcff60a7
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changeset
|
2144 for i in brainix: |
|
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tests of image decoding
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diff
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|
2145 self.assertEqual(h, ComputeMD5(DoGet(_REMOTE, '/instances/%s/matlab' % i))) |
|
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parents:
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|
2146 |
|
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changeset
|
2147 |
|
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|
2148 def test_decode_color(self): |
|
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|
2149 imagej = UploadInstance(_REMOTE, 'ColorTestImageJ.dcm')['ID'] |
|
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|
2150 color = UploadInstance(_REMOTE, 'ColorTestMalaterre.dcm')['ID'] |
|
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parents:
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diff
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|
2151 |
|
2a29bcff60a7
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|
2152 for i in [ imagej, color ]: |
|
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18
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changeset
|
2153 for j in [ 'image-uint8', 'image-uint16', 'image-int16' ]: |
|
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|
2154 self.assertRaises(Exception, lambda: DoGet(_REMOTE, '/instances/%s/%s' % (i, j))) |
|
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|
2155 |
|
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|
2156 self.assertEqual('c14c687f7a1ea9fe022479fc87c67274', ComputeMD5(DoGet(_REMOTE, '/instances/%s/preview' % imagej))) |
|
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|
2157 self.assertEqual('a87d122918a56f803bcfe9d2586b9125', ComputeMD5(DoGet(_REMOTE, '/instances/%s/preview' % color))) |
|
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|
2158 |
|
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|
2159 self.assertEqual('30cc46bfa7aba77a40e4178f6184c25a', ComputeMD5(DoGet(_REMOTE, '/instances/%s/matlab' % imagej))) |
|
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|
2160 self.assertEqual('ff195005cef06b59666fd220a9b4cd9a', ComputeMD5(DoGet(_REMOTE, '/instances/%s/matlab' % color))) |
|
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|
2161 |
|
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|
2162 |
|
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|
2163 def test_decode_rf(self): |
|
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diff
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|
2164 rf = UploadInstance(_REMOTE, 'KarstenHilbertRF.dcm')['ID'] |
|
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|
2165 truth = Image.open(GetDatabasePath('Formats/KarstenHilbertRF.png')) |
|
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|
2166 |
|
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18
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|
2167 self.AssertSameImages(truth.getdata(), '/instances/%s/image-uint8' % rf) |
|
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|
2168 self.AssertSameImages(truth.getdata(), '/instances/%s/image-uint16' % rf) |
|
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changeset
|
2169 self.AssertSameImages(truth.getdata(), '/instances/%s/image-int16' % rf) |
|
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diff
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|
2170 self.AssertSameImages(truth.getdata(), '/instances/%s/preview' % rf) |
|
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|
2171 |
|
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|
2172 self.assertEqual('42254d70efd2f4a1b8f3455909689f0e', ComputeMD5(DoGet(_REMOTE, '/instances/%s/matlab' % rf))) |
|
2a29bcff60a7
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|
2173 |
|
2a29bcff60a7
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Sebastien Jodogne <s.jodogne@gmail.com>
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18
diff
changeset
|
2174 |
|
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|
2175 def test_decode_multiframe(self): |
|
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18
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|
2176 mf = UploadInstance(_REMOTE, 'Multiframe.dcm')['ID'] |
|
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diff
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|
2177 |
|
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changeset
|
2178 # Test the first frame |
|
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18
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|
2179 truth = Image.open(GetDatabasePath('Formats/Multiframe0.png')) |
|
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18
diff
changeset
|
2180 self.AssertSameImages(truth.getdata(), '/instances/%s/image-uint8' % mf) |
|
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|
2181 self.AssertSameImages(truth.getdata(), '/instances/%s/image-uint16' % mf) |
|
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|
2182 self.AssertSameImages(truth.getdata(), '/instances/%s/image-int16' % mf) |
|
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18
diff
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|
2183 self.AssertSameImages(truth.getdata(), '/instances/%s/preview' % mf) |
|
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parents:
18
diff
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|
2184 self.assertEqual('9812b99d93bbcd4e7684ded089b5dfb3', ComputeMD5(DoGet(_REMOTE, '/instances/%s/matlab' % mf))) |
|
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parents:
18
diff
changeset
|
2185 |
|
2a29bcff60a7
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18
diff
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|
2186 self.AssertSameImages(truth.getdata(), '/instances/%s/frames/0/image-uint16' % mf) |
|
2a29bcff60a7
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parents:
18
diff
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|
2187 |
|
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diff
changeset
|
2188 # Test the last frame |
|
2a29bcff60a7
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parents:
18
diff
changeset
|
2189 truth = Image.open(GetDatabasePath('Formats/Multiframe75.png')) |
|
2a29bcff60a7
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Sebastien Jodogne <s.jodogne@gmail.com>
parents:
18
diff
changeset
|
2190 self.AssertSameImages(truth.getdata(), '/instances/%s/frames/75/image-uint16' % mf) |
|
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parents:
18
diff
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|
2191 |
|
2a29bcff60a7
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18
diff
changeset
|
2192 |
|
2a29bcff60a7
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Sebastien Jodogne <s.jodogne@gmail.com>
parents:
18
diff
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|
2193 def test_decode_signed(self): |
|
2a29bcff60a7
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parents:
18
diff
changeset
|
2194 signed = UploadInstance(_REMOTE, 'SignedCT.dcm')['ID'] |
|
2a29bcff60a7
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parents:
18
diff
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|
2195 minValue = -2000 |
|
2a29bcff60a7
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18
diff
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|
2196 maxValue = 4042 |
|
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18
diff
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|
2197 |
|
2a29bcff60a7
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18
diff
changeset
|
2198 truth = Image.open(GetDatabasePath('Formats/SignedCT.png')) |
|
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18
diff
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|
2199 self.AssertSameImages(truth.getdata(), '/instances/%s/image-int16' % signed) |
|
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18
diff
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|
2200 |
|
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18
diff
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|
2201 truth2 = map(lambda x: 0 if x >= 32768 else x, truth.getdata()) |
|
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diff
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|
2202 self.AssertSameImages(truth2, '/instances/%s/image-uint16' % signed) |
|
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|
2203 |
|
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|
2204 truth3 = map(lambda x: 255 if x >= 256 else x, truth2) |
|
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|
2205 self.AssertSameImages(truth3, '/instances/%s/image-uint8' % signed) |
|
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|
2206 |
|
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18
diff
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|
2207 tmp = map(lambda x: x - 65536 if x >= 32768 else x, truth.getdata()) |
|
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diff
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|
2208 tmp = map(lambda x: (255.0 * (x - minValue)) / (maxValue - minValue), tmp) |
|
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|
2209 self.AssertSameImages(tmp, '/instances/%s/preview' % signed) |
|
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|
2210 |
|
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|
2211 self.assertEqual('b57e6c872a3da50877c7da689b03a444', ComputeMD5(DoGet(_REMOTE, '/instances/%s/matlab' % signed))) |
| 22 | 2212 |
| 2213 | |
|
46
85b2e36ed392
explicit GoogleCode source
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45
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|
2214 def test_googlecode_issue_32(self): |
|
92
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|
2215 self.assertRaises(Exception, lambda: DoPut(_REMOTE, '/tools/default-encoding', 'nope')) |
|
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|
2216 self.assertEqual('Windows1251', DoPut(_REMOTE, '/tools/default-encoding', 'Windows1251')) |
|
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|
2217 self.assertEqual('Windows1251', DoGet(_REMOTE, '/tools/default-encoding')) |
|
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|
2218 |
| 22 | 2219 f = UploadInstance(_REMOTE, 'Issue32.dcm')['ID'] |
| 2220 tags = DoGet(_REMOTE, '/instances/%s/tags?simplify' % f) | |
| 2221 self.assertEqual(u'Рентгенография', tags['SeriesDescription']) | |
| 2222 self.assertEqual(u'Таз', tags['BodyPartExamined']) | |
| 2223 self.assertEqual(u'Прямая', tags['ViewPosition']) | |
| 2224 | |
|
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|
2225 # Replay the same test using Latin1 as default encoding: This must fail |
|
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|
2226 self.assertEqual('Latin1', DoPut(_REMOTE, '/tools/default-encoding', 'Latin1')) |
|
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|
2227 |
|
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|
2228 DoDelete(_REMOTE, '/instances/%s' % f) |
|
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|
2229 f = UploadInstance(_REMOTE, 'Issue32.dcm')['ID'] |
|
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|
2230 tags = DoGet(_REMOTE, '/instances/%s/tags?simplify' % f) |
|
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|
2231 self.assertNotEqual(u'Рентгенография', tags['SeriesDescription']) |
|
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2232 |
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2233 |
| 22 | 2234 def test_encodings(self): |
| 23 | 2235 # Latin-1 (ISO_IR 100) |
| 22 | 2236 brainix = UploadInstance(_REMOTE, 'Brainix/Epi/IM-0001-0001.dcm')['ID'] |
| 2237 tags = DoGet(_REMOTE, '/instances/%s/tags?simplify' % brainix) | |
| 2238 self.assertEqual(u'IRM cérébrale, neuro-crâne', tags['StudyDescription']) | |
| 23 | 2239 |
| 2240 # Latin-2 (ISO_IR 101) | |
| 2241 a = UploadInstance(_REMOTE, 'MarekLatin2.dcm')['ID'] | |
| 2242 i = DoGet(_REMOTE, '/instances/%s/simplified-tags' % a) | |
| 2243 # dcm2xml MarekLatin2.dcm | iconv -f latin2 -t utf-8 | xmllint --format - | |
| 2244 self.assertEqual('Imię i Nazwisko osoby opisującej', | |
| 2245 i['ContentSequence'][4]['ConceptNameCodeSequence'][0]['CodeMeaning'].encode('utf-8')) | |
| 2246 | |
|
26
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2247 |
|
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|
2248 def test_storescu_custom_aet(self): |
|
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2249 # This tests a feature introduced in Orthanc 0.9.1: "Custom |
|
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2250 # setting of the local AET during C-Store SCU (both in Lua and |
|
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2251 # in the REST API)." |
|
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|
2252 # https://groups.google.com/forum/#!msg/orthanc-users/o5qMULformU/wZjW2iSaMcAJ |
|
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2253 |
|
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2254 self.assertEqual(0, len(DoGet(_LOCAL, '/patients'))) |
|
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2255 |
|
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2256 a = UploadInstance(_REMOTE, 'Knee/T1/IM-0001-0001.dcm') |
|
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2257 b = UploadInstance(_REMOTE, 'Knee/T1/IM-0001-0002.dcm') |
|
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2258 c = UploadInstance(_REMOTE, 'Knee/T1/IM-0001-0003.dcm') |
|
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2259 |
|
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2260 j = DoPost(_REMOTE, '/modalities/orthanctest/store', { |
|
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diff
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2261 'LocalAet' : 'YOP', |
|
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2262 'Resources' : [ a['ID'], b['ID'] ] |
|
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2263 }) |
|
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2264 |
|
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2265 self.assertEqual(2, len(DoGet(_LOCAL, '/instances'))) |
|
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2266 self.assertEqual('YOP', DoGet(_LOCAL, '/instances/%s/metadata/RemoteAET' % a['ID'])) |
|
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2267 |
|
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diff
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|
2268 DropOrthanc(_LOCAL) |
|
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2269 self.assertEqual(0, len(DoGet(_LOCAL, '/instances'))) |
|
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2270 |
|
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2271 j = DoPost(_REMOTE, '/modalities/orthanctest/store', { |
|
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diff
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|
2272 'Resources' : [ c['ID'] ] |
|
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2273 }) |
|
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2274 |
|
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|
2275 self.assertEqual(1, len(DoGet(_LOCAL, '/instances'))) |
|
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diff
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|
2276 self.assertEqual('ORTHANC', DoGet(_LOCAL, '/instances/%s/metadata/RemoteAET' % c['ID'])) |
|
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diff
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|
2277 |
|
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diff
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|
2278 DropOrthanc(_REMOTE) |
|
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diff
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|
2279 DropOrthanc(_LOCAL) |
|
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diff
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|
2280 |
| 174 | 2281 InstallLuaScriptFromPath(_REMOTE, 'Lua/AutoroutingChangeAet.lua') |
|
26
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diff
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|
2282 DoPost(_REMOTE, '/tools/execute-script', 'aet = "HELLO"', 'application/lua') |
|
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diff
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|
2283 |
|
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diff
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|
2284 self.assertEqual(0, len(DoGet(_LOCAL, '/instances'))) |
|
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diff
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|
2285 UploadInstance(_REMOTE, 'Knee/T1/IM-0001-0001.dcm') |
|
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diff
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|
2286 WaitEmpty(_REMOTE) |
|
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diff
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|
2287 self.assertEqual(1, len(DoGet(_LOCAL, '/instances'))) |
|
040f6ef1394a
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diff
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|
2288 self.assertEqual('HELLO', DoGet(_LOCAL, '/instances/%s/metadata/RemoteAET' % a['ID'])) |
|
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23
diff
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|
2289 |
|
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diff
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|
2290 DoPost(_REMOTE, '/tools/execute-script', 'aet = nill', 'application/lua') |
|
040f6ef1394a
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diff
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|
2291 UploadInstance(_REMOTE, 'Knee/T1/IM-0001-0002.dcm') |
|
040f6ef1394a
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diff
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|
2292 WaitEmpty(_REMOTE) |
|
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diff
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|
2293 self.assertEqual(2, len(DoGet(_LOCAL, '/instances'))) |
|
040f6ef1394a
test_storescu_custom_aet
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
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|
2294 self.assertEqual('ORTHANC', DoGet(_LOCAL, '/instances/%s/metadata/RemoteAET' % b['ID'])) |
|
34
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|
2295 |
|
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diff
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|
2296 def test_resources_since_limit(self): |
|
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|
2297 # Upload 16 instances |
|
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|
2298 for i in range(4): |
|
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|
2299 UploadInstance(_REMOTE, 'Brainix/Flair/IM-0001-000%d.dcm' % (i + 1)) |
|
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Sebastien Jodogne <s.jodogne@gmail.com>
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|
2300 UploadInstance(_REMOTE, 'Brainix/Epi/IM-0001-000%d.dcm' % (i + 1)) |
|
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|
2301 UploadInstance(_REMOTE, 'Knee/T1/IM-0001-000%d.dcm' % (i + 1)) |
|
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Sebastien Jodogne <s.jodogne@gmail.com>
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|
2302 UploadInstance(_REMOTE, 'Knee/T2/IM-0001-000%d.dcm' % (i + 1)) |
|
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|
2303 |
|
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|
2304 self.assertEqual(2, len(DoGet(_REMOTE, '/patients'))) |
|
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Sebastien Jodogne <s.jodogne@gmail.com>
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|
2305 self.assertEqual(2, len(DoGet(_REMOTE, '/studies'))) |
|
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Sebastien Jodogne <s.jodogne@gmail.com>
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diff
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|
2306 self.assertEqual(4, len(DoGet(_REMOTE, '/series'))) |
|
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Sebastien Jodogne <s.jodogne@gmail.com>
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|
2307 self.assertEqual(16, len(DoGet(_REMOTE, '/instances'))) |
|
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|
2308 |
|
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Sebastien Jodogne <s.jodogne@gmail.com>
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diff
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|
2309 self.assertRaises(Exception, lambda: DoGet(_REMOTE, '/patients&since=10' % i)) |
|
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Sebastien Jodogne <s.jodogne@gmail.com>
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diff
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|
2310 self.assertRaises(Exception, lambda: DoGet(_REMOTE, '/patients&limit=10' % i)) |
|
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|
2311 |
|
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diff
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|
2312 self.assertEqual(0, len(DoGet(_REMOTE, '/patients?since=0&limit=0'))) |
|
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Sebastien Jodogne <s.jodogne@gmail.com>
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diff
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|
2313 self.assertEqual(2, len(DoGet(_REMOTE, '/patients?since=0&limit=100'))) |
|
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|
2314 self.assertEqual(2, len(DoGet(_REMOTE, '/studies?since=0&limit=100'))) |
|
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|
2315 self.assertEqual(4, len(DoGet(_REMOTE, '/series?since=0&limit=100'))) |
|
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|
2316 self.assertEqual(16, len(DoGet(_REMOTE, '/instances?since=0&limit=100'))) |
|
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|
2317 self.assertEqual(1, len(DoGet(_REMOTE, '/patients?since=1&limit=100'))) |
|
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|
2318 self.assertEqual(0, len(DoGet(_REMOTE, '/patients?since=2&limit=100'))) |
|
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|
2319 self.assertEqual(0, len(DoGet(_REMOTE, '/patients?since=3&limit=100'))) |
|
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|
2320 self.assertEqual(1, len(DoGet(_REMOTE, '/studies?since=1&limit=100'))) |
|
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|
2321 self.assertEqual(3, len(DoGet(_REMOTE, '/series?since=1&limit=100'))) |
|
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|
2322 self.assertEqual(2, len(DoGet(_REMOTE, '/series?since=2&limit=100'))) |
|
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|
2323 self.assertEqual(1, len(DoGet(_REMOTE, '/series?since=3&limit=100'))) |
|
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|
2324 self.assertEqual(0, len(DoGet(_REMOTE, '/series?since=4&limit=100'))) |
|
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|
2325 self.assertEqual(0, len(DoGet(_REMOTE, '/series?since=100&limit=100'))) |
|
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|
2326 self.assertEqual(15, len(DoGet(_REMOTE, '/instances?since=1&limit=100'))) |
|
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|
2327 |
|
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|
2328 for limit in [ 1, 2, 3, 7, 16, 17 ]: |
|
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|
2329 s = {} |
|
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|
2330 since = 0 |
|
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|
2331 while True: |
|
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|
2332 t = DoGet(_REMOTE, '/instances?since=%d&limit=%d' % (since, limit)) |
|
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2333 if len(t) == 0: |
|
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|
2334 break |
|
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|
2335 |
|
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|
2336 since += len(t) |
|
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|
2337 for i in t: |
|
1047d7bc5210
test limit and since arguments while retrieving DICOM resources in the REST API
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
28
diff
changeset
|
2338 s[i] = None |
|
1047d7bc5210
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Sebastien Jodogne <s.jodogne@gmail.com>
parents:
28
diff
changeset
|
2339 |
|
1047d7bc5210
test limit and since arguments while retrieving DICOM resources in the REST API
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
28
diff
changeset
|
2340 self.assertEqual(16, len(s)) |
|
1047d7bc5210
test limit and since arguments while retrieving DICOM resources in the REST API
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
28
diff
changeset
|
2341 for instance in DoGet(_REMOTE, '/instances'): |
|
1047d7bc5210
test limit and since arguments while retrieving DICOM resources in the REST API
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
28
diff
changeset
|
2342 self.assertTrue(instance in s) |
| 36 | 2343 |
| 2344 | |
| 2345 def test_create_pdf(self): | |
| 2346 # Upload 4 instances | |
| 2347 brainixInstance = UploadInstance(_REMOTE, 'Brainix/Flair/IM-0001-0001.dcm')['ID'] | |
| 2348 UploadInstance(_REMOTE, 'Brainix/Epi/IM-0001-0001.dcm') | |
| 2349 UploadInstance(_REMOTE, 'Knee/T1/IM-0001-0001.dcm') | |
| 2350 UploadInstance(_REMOTE, 'Knee/T2/IM-0001-0001.dcm') | |
| 2351 | |
| 2352 brainixPatient = '16738bc3-e47ed42a-43ce044c-a3414a45-cb069bd0' | |
| 2353 brainixStudy = '27f7126f-4f66fb14-03f4081b-f9341db2-53925988' | |
| 2354 brainixEpi = '2ac1316d-3e432022-62eabff2-c59f5475-9b1ac3f8' | |
| 2355 | |
| 2356 with open(GetDatabasePath('HelloWorld.pdf'), 'rb') as f: | |
| 2357 pdf = f.read() | |
| 2358 | |
| 2359 i = DoPost(_REMOTE, '/tools/create-dicom', | |
| 2360 json.dumps({ | |
| 2361 'Tags' : { | |
| 2362 'PatientName' : 'Jodogne', | |
| 2363 'Modality' : 'CT', | |
| 2364 }, | |
| 2365 'Content' : 'data:application/pdf;base64,' + base64.b64encode(pdf) | |
| 2366 })) | |
| 2367 | |
| 2368 self.assertEqual('Jodogne', DoGet(_REMOTE, '/instances/%s/content/PatientName' % i['ID']).strip()) | |
| 2369 self.assertEqual('OT', DoGet(_REMOTE, '/instances/%s/content/Modality' % i['ID']).strip()) | |
| 2370 | |
| 2371 b = DoGet(_REMOTE, '/instances/%s/content/0042-0011' % i['ID']) | |
| 2372 self.assertEqual(len(b), len(pdf) + 1) | |
| 2373 self.assertEqual(ComputeMD5(b), ComputeMD5(pdf + '\0')) | |
| 2374 | |
| 2375 self.assertRaises(Exception, lambda: DoPost(_REMOTE, '/tools/create-dicom', | |
| 2376 json.dumps({ | |
| 2377 'Parent' : brainixPatient, | |
| 2378 'Tags' : { | |
| 2379 'PatientName' : 'Jodogne', | |
| 2380 } | |
| 2381 }))) | |
| 2382 | |
| 2383 i = DoPost(_REMOTE, '/tools/create-dicom', | |
| 2384 json.dumps({ | |
| 2385 'Parent' : brainixPatient, | |
| 2386 'Tags' : { 'StudyDescription' : 'PDF^Patient' }, | |
| 2387 'Content' : 'data:application/pdf;base64,' + base64.b64encode(pdf) | |
| 2388 })) | |
| 2389 | |
| 2390 self.assertEqual(brainixPatient, DoGet(_REMOTE, '/instances/%s/patient' % i['ID'])['ID']) | |
| 2391 | |
| 2392 i = DoPost(_REMOTE, '/tools/create-dicom', | |
| 2393 json.dumps({ | |
| 2394 'Parent' : brainixStudy, | |
| 2395 'Tags' : { 'SeriesDescription' : 'PDF^Study' }, | |
| 2396 'Content' : 'data:application/pdf;base64,' + base64.b64encode(pdf) | |
| 2397 })) | |
| 2398 | |
| 2399 self.assertEqual(brainixStudy, DoGet(_REMOTE, '/instances/%s/study' % i['ID'])['ID']) | |
| 2400 | |
| 2401 i = DoPost(_REMOTE, '/tools/create-dicom', | |
| 2402 json.dumps({ | |
| 2403 'Parent' : brainixEpi, | |
| 37 | 2404 'Tags' : { 'SpecificCharacterSet' : 'ISO_IR 13' }, |
| 36 | 2405 'Content' : 'data:application/pdf;base64,' + base64.b64encode(pdf) |
| 2406 })) | |
| 2407 | |
| 2408 self.assertEqual(brainixEpi, DoGet(_REMOTE, '/instances/%s/series' % i['ID'])['ID']) | |
| 2409 | |
| 2410 b = DoGet(_REMOTE, '/instances/%s/pdf' % i['ID']) | |
| 2411 self.assertEqual(len(b), len(pdf)) | |
| 2412 self.assertEqual(ComputeMD5(b), ComputeMD5(pdf)) | |
| 2413 | |
| 2414 self.assertRaises(Exception, lambda: DoGet(_REMOTE, '/instances/%s/pdf' % brainixInstance)) | |
| 38 | 2415 |
| 2416 | |
| 2417 def test_create_series(self): | |
| 2418 i = DoPost(_REMOTE, '/tools/create-dicom', | |
| 2419 json.dumps({ | |
| 2420 'Tags' : { | |
| 40 | 2421 'SpecificCharacterSet' : 'ISO_IR 100', |
| 2422 'PatientName' : 'Sébastien Jodogne', | |
| 38 | 2423 'Modality' : 'CT', |
| 2424 }, | |
| 2425 'Content' : [ | |
| 40 | 2426 { |
| 2427 'Content': 'data:image/png;base64,iVBORw0KGgoAAAANSUhEUgAAAAUAAAAFCAYAAACNbyblAAAAHElEQVQI12P4//8/w38GIAXDIBKE0DHxgljNBAAO9TXL0Y4OHwAAAABJRU5ErkJggg==', # red dot in RGBA | |
| 2428 'Tags' : { 'ImageComments' : 'Tutu' } | |
| 2429 }, | |
| 38 | 2430 'data:image/png;base64,iVBORw0KGgoAAAANSUhEUgAAABAAAAAQCAYAAAAf8/9hAAAAoUlEQVQ4jZ2SWw3EIBREjwUsYAELa2EtoAULFUCyXAtroRZqoRbox254BdLC/DZnZjoXWJFgCDg8egW2CBEhEnDzyRk+Ecxz2KP/0AL8S99T+jQccAVs22qKwAuPuq0uyNg9cPLh3am+pe/dkHLZtqJHj6vXJrZ7nvzvxxgemXgUwnGfXqpee09mUwp8m022OYP6bLF7mVuVe0y/umxinsAXRd9z0k1ubWsAAAAASUVORK5CYII=', |
| 2431 ] | |
| 2432 })) | |
| 2433 | |
| 2434 s = DoGet(_REMOTE, i['Path']) | |
| 2435 self.assertEqual('Series', s['Type']) | |
| 2436 self.assertEqual(s['ID'], i['ID']) | |
| 2437 self.assertEqual(2, len(s['Instances'])) | |
| 39 | 2438 self.assertEqual(2, s['ExpectedNumberOfInstances']) |
| 2439 self.assertEqual('Complete', s['Status']) | |
| 40 | 2440 |
| 2441 a = DoGet(_REMOTE, '/instances/%s/tags?simplify' % s['Instances'][0]) | |
| 2442 b = DoGet(_REMOTE, '/instances/%s/tags?simplify' % s['Instances'][1]) | |
| 2443 self.assertTrue('ImageComments' in a or 'ImageComments' in b) | |
| 2444 if 'ImageComments' in a: | |
| 2445 self.assertEqual('Tutu', a['ImageComments']) | |
| 2446 else: | |
| 2447 self.assertEqual('Tutu', b['ImageComments']) | |
| 2448 | |
| 2449 patient = DoGet(_REMOTE, '/instances/%s/patient' % s['Instances'][0]) | |
| 2450 self.assertEqual(patient['MainDicomTags']['PatientName'].encode('utf-8'), | |
| 2451 'Sébastien Jodogne') | |
| 47 | 2452 |
| 2453 | |
| 2454 def test_create_binary(self): | |
| 2455 binary = ''.join(map(chr, range(256))) | |
| 2456 encoded = 'data:application/octet-stream;base64,' + base64.b64encode(binary) | |
| 2457 tags = { | |
| 2458 'PatientName' : 'Jodogne', | |
| 2459 '8899-8899' : encoded | |
| 2460 } | |
| 2461 | |
| 2462 i = DoPost(_REMOTE, '/tools/create-dicom', | |
| 2463 json.dumps({ | |
| 2464 'Tags' : tags | |
| 2465 })) | |
| 2466 | |
| 2467 self.assertEqual('Jodogne', DoGet(_REMOTE, '/instances/%s/content/PatientName' % i['ID']).strip()) | |
| 2468 self.assertEqual(binary, DoGet(_REMOTE, '/instances/%s/content/8899-8899' % i['ID']).strip()) | |
| 2469 | |
| 2470 i = DoPost(_REMOTE, '/tools/create-dicom', | |
| 2471 json.dumps({ | |
| 2472 'InterpretBinaryTags' : False, | |
| 2473 'Tags' : tags | |
| 2474 })) | |
| 2475 | |
| 2476 self.assertEqual('Jodogne', DoGet(_REMOTE, '/instances/%s/content/PatientName' % i['ID']).strip()) | |
| 2477 self.assertEqual(encoded, DoGet(_REMOTE, '/instances/%s/content/8899-8899' % i['ID'])[0:-1]) | |
|
48
e4352463ff74
test_patient_ids_collision
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
47
diff
changeset
|
2478 |
|
e4352463ff74
test_patient_ids_collision
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
47
diff
changeset
|
2479 |
|
e4352463ff74
test_patient_ids_collision
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
47
diff
changeset
|
2480 def test_patient_ids_collision(self): |
|
e4352463ff74
test_patient_ids_collision
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
47
diff
changeset
|
2481 # Upload 3 instances from 3 different studies, but with the |
|
e4352463ff74
test_patient_ids_collision
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
47
diff
changeset
|
2482 # same PatientID |
|
e4352463ff74
test_patient_ids_collision
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
47
diff
changeset
|
2483 for i in range(3): |
|
e4352463ff74
test_patient_ids_collision
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
47
diff
changeset
|
2484 UploadInstance(_REMOTE, 'PatientIdsCollision/Image%d.dcm' % (i + 1)) |
|
e4352463ff74
test_patient_ids_collision
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
47
diff
changeset
|
2485 |
|
e4352463ff74
test_patient_ids_collision
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
47
diff
changeset
|
2486 a = DoPost(_REMOTE, '/tools/find', { 'Level' : 'Patient', |
|
e4352463ff74
test_patient_ids_collision
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
47
diff
changeset
|
2487 'Query' : { 'PatientName' : '*' }}) |
|
e4352463ff74
test_patient_ids_collision
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
47
diff
changeset
|
2488 self.assertEqual(1, len(a)) |
|
e4352463ff74
test_patient_ids_collision
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
47
diff
changeset
|
2489 self.assertEqual('COMMON', DoGet(_REMOTE, '/patients/%s' % a[0]) ['MainDicomTags']['PatientID']) |
|
e4352463ff74
test_patient_ids_collision
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
47
diff
changeset
|
2490 |
|
e4352463ff74
test_patient_ids_collision
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
47
diff
changeset
|
2491 a = DoPost(_REMOTE, '/tools/find', { 'Level' : 'Study', |
|
e4352463ff74
test_patient_ids_collision
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
47
diff
changeset
|
2492 'CaseSensitive' : True, |
|
e4352463ff74
test_patient_ids_collision
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
47
diff
changeset
|
2493 'Query' : { 'PatientName' : 'FOO\\HELLO' }}) |
|
e4352463ff74
test_patient_ids_collision
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
47
diff
changeset
|
2494 self.assertEqual(2, len(a)) |
|
e4352463ff74
test_patient_ids_collision
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
47
diff
changeset
|
2495 |
|
e4352463ff74
test_patient_ids_collision
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
47
diff
changeset
|
2496 a = DoPost(_REMOTE, '/tools/find', { 'Level' : 'Series', |
|
e4352463ff74
test_patient_ids_collision
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
47
diff
changeset
|
2497 'CaseSensitive' : False, |
|
e4352463ff74
test_patient_ids_collision
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
47
diff
changeset
|
2498 'Query' : { 'PatientName' : 'Foo' }}) |
|
e4352463ff74
test_patient_ids_collision
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
47
diff
changeset
|
2499 self.assertEqual(1, len(a)) |
|
e4352463ff74
test_patient_ids_collision
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
47
diff
changeset
|
2500 self.assertEqual('FOO^SERIES', DoGet(_REMOTE, '/series/%s/study' % a[0]) ['MainDicomTags']['StudyDescription']) |
|
e4352463ff74
test_patient_ids_collision
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
47
diff
changeset
|
2501 self.assertEqual('FOO', DoGet(_REMOTE, '/series/%s/study' % a[0]) ['PatientMainDicomTags']['PatientName']) |
|
e4352463ff74
test_patient_ids_collision
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
47
diff
changeset
|
2502 self.assertEqual('COMMON', DoGet(_REMOTE, '/series/%s/study' % a[0]) ['PatientMainDicomTags']['PatientID']) |
|
e4352463ff74
test_patient_ids_collision
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
47
diff
changeset
|
2503 |
|
e4352463ff74
test_patient_ids_collision
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
47
diff
changeset
|
2504 a = DoPost(_REMOTE, '/tools/find', { 'Level' : 'Study', |
|
e4352463ff74
test_patient_ids_collision
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
47
diff
changeset
|
2505 'Query' : { 'PatientName' : '*' }}) |
|
e4352463ff74
test_patient_ids_collision
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
47
diff
changeset
|
2506 self.assertEqual(3, len(a)) |
|
e4352463ff74
test_patient_ids_collision
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
47
diff
changeset
|
2507 d = map(lambda x: DoGet(_REMOTE, '/studies/%s' % x) ['MainDicomTags']['StudyDescription'], a) |
|
e4352463ff74
test_patient_ids_collision
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
47
diff
changeset
|
2508 self.assertTrue('FOO^SERIES' in d) |
|
e4352463ff74
test_patient_ids_collision
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
47
diff
changeset
|
2509 self.assertTrue('HELLO^SERIES' in d) |
|
e4352463ff74
test_patient_ids_collision
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
47
diff
changeset
|
2510 self.assertTrue('WORLD^SERIES' in d) |
|
e4352463ff74
test_patient_ids_collision
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
47
diff
changeset
|
2511 |
|
e4352463ff74
test_patient_ids_collision
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
47
diff
changeset
|
2512 d = map(lambda x: DoGet(_REMOTE, '/studies/%s' % x) ['PatientMainDicomTags']['PatientID'], a) |
|
e4352463ff74
test_patient_ids_collision
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
47
diff
changeset
|
2513 self.assertEqual(1, len(set(d))) |
|
e4352463ff74
test_patient_ids_collision
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
47
diff
changeset
|
2514 self.assertEqual('COMMON', d[0]) |
|
e4352463ff74
test_patient_ids_collision
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
47
diff
changeset
|
2515 |
|
e4352463ff74
test_patient_ids_collision
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
47
diff
changeset
|
2516 for i in a: |
|
e4352463ff74
test_patient_ids_collision
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
47
diff
changeset
|
2517 d = DoGet(_REMOTE, '/studies/%s' % i) ['MainDicomTags']['StudyDescription'] |
|
e4352463ff74
test_patient_ids_collision
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
47
diff
changeset
|
2518 p = DoGet(_REMOTE, '/studies/%s' % i) ['PatientMainDicomTags']['PatientName'] |
|
e4352463ff74
test_patient_ids_collision
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
47
diff
changeset
|
2519 self.assertEqual('%s^SERIES' % p, d) |
|
49
e7f9b8199545
test_bitbucket_issue_4
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
48
diff
changeset
|
2520 |
|
e7f9b8199545
test_bitbucket_issue_4
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
48
diff
changeset
|
2521 |
|
e7f9b8199545
test_bitbucket_issue_4
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
48
diff
changeset
|
2522 def test_bitbucket_issue_4(self): |
|
e7f9b8199545
test_bitbucket_issue_4
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
48
diff
changeset
|
2523 UploadInstance(_REMOTE, 'Brainix/Epi/IM-0001-0001.dcm') |
|
e7f9b8199545
test_bitbucket_issue_4
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
48
diff
changeset
|
2524 UploadInstance(_REMOTE, 'Brainix/Epi/IM-0001-0002.dcm') |
|
e7f9b8199545
test_bitbucket_issue_4
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
48
diff
changeset
|
2525 UploadInstance(_REMOTE, 'Brainix/Epi/IM-0001-0003.dcm') |
|
e7f9b8199545
test_bitbucket_issue_4
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
48
diff
changeset
|
2526 UploadInstance(_REMOTE, 'Formats/Jpeg.dcm') |
|
e7f9b8199545
test_bitbucket_issue_4
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
48
diff
changeset
|
2527 UploadInstance(_REMOTE, 'Formats/JpegLossless.dcm') |
|
e7f9b8199545
test_bitbucket_issue_4
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
48
diff
changeset
|
2528 UploadInstance(_REMOTE, 'Formats/Rle.dcm') |
|
e7f9b8199545
test_bitbucket_issue_4
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
48
diff
changeset
|
2529 |
|
e7f9b8199545
test_bitbucket_issue_4
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
48
diff
changeset
|
2530 self.assertEqual(0, len(DoGet(_LOCAL, '/instances'))) |
|
e7f9b8199545
test_bitbucket_issue_4
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
48
diff
changeset
|
2531 self.assertEqual(6, len(DoGet(_REMOTE, '/instances'))) |
|
e7f9b8199545
test_bitbucket_issue_4
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
48
diff
changeset
|
2532 |
|
e7f9b8199545
test_bitbucket_issue_4
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
48
diff
changeset
|
2533 p = DoGet(_REMOTE, '/patients') |
|
e7f9b8199545
test_bitbucket_issue_4
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
48
diff
changeset
|
2534 self.assertEqual(2, len(p)) |
|
e7f9b8199545
test_bitbucket_issue_4
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
48
diff
changeset
|
2535 i1 = map(lambda x: x['ID'], DoGet(_REMOTE, '/patients/%s/instances' % p[0])) |
|
e7f9b8199545
test_bitbucket_issue_4
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
48
diff
changeset
|
2536 i2 = map(lambda x: x['ID'], DoGet(_REMOTE, '/patients/%s/instances' % p[1])) |
|
e7f9b8199545
test_bitbucket_issue_4
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
48
diff
changeset
|
2537 self.assertEqual(3, len(i1)) |
|
e7f9b8199545
test_bitbucket_issue_4
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
48
diff
changeset
|
2538 self.assertEqual(3, len(i2)) |
|
e7f9b8199545
test_bitbucket_issue_4
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
48
diff
changeset
|
2539 |
|
e7f9b8199545
test_bitbucket_issue_4
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
48
diff
changeset
|
2540 j = DoPost(_REMOTE, '/modalities/orthanctest/store', i2[0:1] + i1 + i2[1:3]) |
|
e7f9b8199545
test_bitbucket_issue_4
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
48
diff
changeset
|
2541 |
|
e7f9b8199545
test_bitbucket_issue_4
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
48
diff
changeset
|
2542 self.assertEqual(6, len(DoGet(_LOCAL, '/instances'))) |
|
50
8de63d56cf11
test_create_sequence
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
49
diff
changeset
|
2543 |
|
8de63d56cf11
test_create_sequence
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
49
diff
changeset
|
2544 |
|
8de63d56cf11
test_create_sequence
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
49
diff
changeset
|
2545 def test_create_sequence(self): |
|
8de63d56cf11
test_create_sequence
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
49
diff
changeset
|
2546 i = DoPost(_REMOTE, '/tools/create-dicom', |
|
8de63d56cf11
test_create_sequence
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
49
diff
changeset
|
2547 json.dumps({ |
|
8de63d56cf11
test_create_sequence
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
49
diff
changeset
|
2548 'Tags' : { |
|
8de63d56cf11
test_create_sequence
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
49
diff
changeset
|
2549 'SpecificCharacterSet': 'ISO_IR 100', # Encode using Latin1 |
|
8de63d56cf11
test_create_sequence
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
49
diff
changeset
|
2550 'PatientName': 'Jodogne^', |
|
51
264a20a0276d
test_modify_sequence
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
50
diff
changeset
|
2551 'ReferencedStudySequence': GenerateTestSequence(), |
|
50
8de63d56cf11
test_create_sequence
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
49
diff
changeset
|
2552 } |
|
8de63d56cf11
test_create_sequence
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
49
diff
changeset
|
2553 }))['ID'] |
|
8de63d56cf11
test_create_sequence
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
49
diff
changeset
|
2554 |
|
8de63d56cf11
test_create_sequence
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
49
diff
changeset
|
2555 self.assertEqual('Jodogne^', DoGet(_REMOTE, '/instances/%s/content/PatientName' % i)) |
|
8de63d56cf11
test_create_sequence
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
49
diff
changeset
|
2556 self.assertEqual('Hello^', DoGet(_REMOTE, '/instances/%s/content/ReferencedStudySequence/0/StudyDescription' % i)) |
|
8de63d56cf11
test_create_sequence
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
49
diff
changeset
|
2557 self.assertEqual('Toto', DoGet(_REMOTE, '/instances/%s/content/ReferencedStudySequence/0/ReferencedStudySequence/0/StudyDescription' % i)) |
|
8de63d56cf11
test_create_sequence
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
49
diff
changeset
|
2558 self.assertEqual('Tata', DoGet(_REMOTE, '/instances/%s/content/ReferencedStudySequence/0/ReferencedStudySequence/1/StudyDescription' % i)) |
|
8de63d56cf11
test_create_sequence
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
49
diff
changeset
|
2559 self.assertEqual(u'Sébastien^'.encode('latin-1'), |
|
8de63d56cf11
test_create_sequence
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
49
diff
changeset
|
2560 DoGet(_REMOTE, '/instances/%s/content/ReferencedStudySequence/1/StudyDescription' % i)) |
|
51
264a20a0276d
test_modify_sequence
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
50
diff
changeset
|
2561 |
|
264a20a0276d
test_modify_sequence
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
50
diff
changeset
|
2562 |
|
264a20a0276d
test_modify_sequence
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
50
diff
changeset
|
2563 def test_modify_sequence(self): |
|
264a20a0276d
test_modify_sequence
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
50
diff
changeset
|
2564 i = UploadInstance(_REMOTE, 'PrivateTags.dcm')['ID'] |
|
264a20a0276d
test_modify_sequence
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
50
diff
changeset
|
2565 self.assertRaises(Exception, lambda: DoGet(_REMOTE, '/instances/%s/content/ReferencedStudySequence' % i)) |
|
264a20a0276d
test_modify_sequence
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
50
diff
changeset
|
2566 |
|
264a20a0276d
test_modify_sequence
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
50
diff
changeset
|
2567 j = DoPost(_REMOTE, '/instances/%s/modify' % i, |
|
264a20a0276d
test_modify_sequence
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
50
diff
changeset
|
2568 json.dumps({ |
|
264a20a0276d
test_modify_sequence
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
50
diff
changeset
|
2569 "Replace" : { |
|
264a20a0276d
test_modify_sequence
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
50
diff
changeset
|
2570 "PatientName" : "hello", |
|
264a20a0276d
test_modify_sequence
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
50
diff
changeset
|
2571 'ReferencedStudySequence': GenerateTestSequence(), |
|
264a20a0276d
test_modify_sequence
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
50
diff
changeset
|
2572 }, |
|
264a20a0276d
test_modify_sequence
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
50
diff
changeset
|
2573 }), |
|
264a20a0276d
test_modify_sequence
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
50
diff
changeset
|
2574 'application/json') |
|
264a20a0276d
test_modify_sequence
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
50
diff
changeset
|
2575 j = DoPost(_REMOTE, '/instances', j, 'application/dicom')['ID'] |
|
264a20a0276d
test_modify_sequence
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
50
diff
changeset
|
2576 DoDelete(_REMOTE, '/instances/%s' % i) |
|
264a20a0276d
test_modify_sequence
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
50
diff
changeset
|
2577 |
| 52 | 2578 self.assertEqual(2, len(DoGet(_REMOTE, '/instances/%s/content/ReferencedStudySequence' % j))) |
| 2579 | |
| 2580 | |
| 2581 def test_compression(self): | |
| 2582 i = UploadInstance(_REMOTE, 'DummyCT.dcm')['ID'] | |
| 2583 | |
| 2584 data = DoGetRaw(_REMOTE, '/instances/%s/attachments/dicom-as-json/data' % i)[1] | |
| 2585 | |
| 2586 # "StorageCompression" is enabled in the Orthanc to be tested, | |
| 2587 # uncompress the data before running the test | |
| 2588 if DoGet(_REMOTE, '/instances/%s/attachments/dicom-as-json/is-compressed' % i) != 0: | |
| 2589 DoPost(_REMOTE, '/instances/%s/attachments/dicom-as-json/uncompress' % i) | |
| 2590 | |
| 2591 cs = DoGet(_REMOTE, '/statistics')['TotalDiskSize'] | |
| 2592 us = DoGet(_REMOTE, '/statistics')['TotalUncompressedSize'] | |
| 2593 size = DoGet(_REMOTE, '/instances/%s/attachments/dicom-as-json/size' % i) | |
| 2594 md5 = DoGet(_REMOTE, '/instances/%s/attachments/dicom-as-json/md5' % i) | |
| 2595 self.assertEqual(data, DoGetRaw(_REMOTE, '/instances/%s/attachments/dicom-as-json/compressed-data' % i)[1]) | |
| 2596 self.assertEqual(md5, DoGet(_REMOTE, '/instances/%s/attachments/dicom-as-json/compressed-md5' % i)) | |
| 2597 self.assertEqual(size, DoGet(_REMOTE, '/instances/%s/attachments/dicom-as-json/compressed-size' % i)) | |
| 2598 | |
| 2599 ops = DoGet(_REMOTE, '/instances/%s/attachments/dicom-as-json' % i) | |
| 2600 self.assertTrue('compress' in ops) | |
| 2601 self.assertTrue('uncompress' in ops) | |
| 2602 self.assertTrue('is-compressed' in ops) | |
| 2603 self.assertEqual(0, DoGet(_REMOTE, '/instances/%s/attachments/dicom-as-json/is-compressed' % i)) | |
| 2604 DoPost(_REMOTE, '/instances/%s/attachments/dicom-as-json/verify-md5' % i) | |
| 2605 | |
| 2606 DoPost(_REMOTE, '/instances/%s/attachments/dicom-as-json/compress' % i) | |
| 2607 DoPost(_REMOTE, '/instances/%s/attachments/dicom-as-json/verify-md5' % i) | |
| 2608 self.assertEqual(1, DoGet(_REMOTE, '/instances/%s/attachments/dicom-as-json/is-compressed' % i)) | |
| 2609 self.assertLess(cs, DoGet(_REMOTE, '/statistics')['TotalDiskSize']) | |
| 2610 self.assertEqual(us, DoGet(_REMOTE, '/statistics')['TotalUncompressedSize']) | |
| 2611 self.assertGreater(len(data), len(DoGetRaw(_REMOTE, '/instances/%s/attachments/dicom-as-json/compressed-data' % i)[1])) | |
| 2612 self.assertGreater(size, DoGet(_REMOTE, '/instances/%s/attachments/dicom-as-json/compressed-size' % i)) | |
| 2613 self.assertEqual(size, DoGet(_REMOTE, '/instances/%s/attachments/dicom-as-json/size' % i)) | |
| 2614 self.assertEqual(md5, DoGet(_REMOTE, '/instances/%s/attachments/dicom-as-json/md5' % i)) | |
| 2615 self.assertNotEqual(md5, DoGet(_REMOTE, '/instances/%s/attachments/dicom-as-json/compressed-md5' % i)) | |
| 2616 | |
| 2617 DoPost(_REMOTE, '/instances/%s/attachments/dicom-as-json/uncompress' % i) | |
| 2618 DoPost(_REMOTE, '/instances/%s/attachments/dicom-as-json/verify-md5' % i) | |
| 2619 self.assertEqual(0, DoGet(_REMOTE, '/instances/%s/attachments/dicom-as-json/is-compressed' % i)) | |
| 2620 self.assertEqual(data, DoGetRaw(_REMOTE, '/instances/%s/attachments/dicom-as-json/compressed-data' % i)[1]) | |
| 2621 self.assertEqual(size, DoGet(_REMOTE, '/instances/%s/attachments/dicom-as-json/compressed-size' % i)) | |
| 2622 self.assertEqual(size, DoGet(_REMOTE, '/instances/%s/attachments/dicom-as-json/size' % i)) | |
| 2623 self.assertEqual(md5, DoGet(_REMOTE, '/instances/%s/attachments/dicom-as-json/md5' % i)) | |
| 2624 self.assertEqual(md5, DoGet(_REMOTE, '/instances/%s/attachments/dicom-as-json/compressed-md5' % i)) | |
| 2625 self.assertEqual(cs, DoGet(_REMOTE, '/statistics')['TotalDiskSize']) | |
| 2626 self.assertEqual(us, DoGet(_REMOTE, '/statistics')['TotalUncompressedSize']) | |
| 53 | 2627 |
| 2628 | |
| 2629 def test_ordered_slices(self): | |
| 2630 i = UploadInstance(_REMOTE, 'Multiframe.dcm')['ID'] | |
| 2631 s = DoGet(_REMOTE, '/instances/%s' % i)['ParentSeries'] | |
| 2632 o = DoGet(_REMOTE, '/series/%s/ordered-slices' % s) | |
| 2633 self.assertEqual('Sequence', o['Type']) | |
| 2634 self.assertEqual(1, len(o['Dicom'])) | |
| 2635 self.assertEqual('/instances/9e05eb0a-18b6268c-e0d36085-8ddab517-3b5aec02/file', o['Dicom'][0]) | |
| 2636 self.assertEqual(76, len(o['Slices'])) | |
| 2637 for j in range(76): | |
| 2638 self.assertEqual('/instances/9e05eb0a-18b6268c-e0d36085-8ddab517-3b5aec02/frames/%d' % j, o['Slices'][j]) | |
| 2639 | |
| 68 | 2640 self.assertEqual(1, len(o['SlicesShort'])) |
| 2641 self.assertEqual('9e05eb0a-18b6268c-e0d36085-8ddab517-3b5aec02', o['SlicesShort'][0][0]) | |
| 2642 self.assertEqual(0, o['SlicesShort'][0][1]) | |
| 2643 self.assertEqual(76, o['SlicesShort'][0][2]) | |
| 2644 | |
| 53 | 2645 i = UploadInstance(_REMOTE, 'Brainix/Epi/IM-0001-0001.dcm')['ID'] |
| 2646 j = UploadInstance(_REMOTE, 'Brainix/Epi/IM-0001-0002.dcm')['ID'] | |
| 2647 k = UploadInstance(_REMOTE, 'Brainix/Epi/IM-0001-0003.dcm')['ID'] | |
| 2648 s = DoGet(_REMOTE, '/instances/%s' % i)['ParentSeries'] | |
| 2649 o = DoGet(_REMOTE, '/series/%s/ordered-slices' % s) | |
| 2650 | |
| 2651 self.assertEqual('Volume', o['Type']) | |
| 2652 self.assertEqual(3, len(o['Dicom'])) | |
| 2653 self.assertEqual(3, len(o['Slices'])) | |
| 2654 self.assertEqual('/instances/%s/file' % i, o['Dicom'][2]) | |
| 2655 self.assertEqual('/instances/%s/file' % j, o['Dicom'][1]) | |
| 2656 self.assertEqual('/instances/%s/file' % k, o['Dicom'][0]) | |
| 2657 self.assertEqual('/instances/%s/frames/0' % i, o['Slices'][2]) | |
| 2658 self.assertEqual('/instances/%s/frames/0' % j, o['Slices'][1]) | |
| 2659 self.assertEqual('/instances/%s/frames/0' % k, o['Slices'][0]) | |
| 2660 | |
| 68 | 2661 self.assertEqual(3, len(o['SlicesShort'])) |
| 2662 self.assertEqual(k, o['SlicesShort'][0][0]) | |
| 2663 self.assertEqual(0, o['SlicesShort'][0][1]) | |
| 2664 self.assertEqual(1, o['SlicesShort'][0][2]) | |
| 2665 self.assertEqual(j, o['SlicesShort'][1][0]) | |
| 2666 self.assertEqual(0, o['SlicesShort'][1][1]) | |
| 2667 self.assertEqual(1, o['SlicesShort'][1][2]) | |
| 2668 self.assertEqual(i, o['SlicesShort'][2][0]) | |
| 2669 self.assertEqual(0, o['SlicesShort'][2][1]) | |
| 2670 self.assertEqual(1, o['SlicesShort'][2][2]) | |
| 2671 | |
| 53 | 2672 i = UploadInstance(_REMOTE, 'Beaufix/IM-0001-0001.dcm')['ID'] |
| 2673 j = UploadInstance(_REMOTE, 'Beaufix/IM-0001-0002.dcm')['ID'] | |
| 2674 s = DoGet(_REMOTE, '/instances/%s' % i)['ParentSeries'] | |
| 2675 o = DoGet(_REMOTE, '/series/%s/ordered-slices' % s) | |
| 2676 | |
| 2677 self.assertEqual('Sequence', o['Type']) | |
| 2678 self.assertEqual(2, len(o['Dicom'])) | |
| 2679 self.assertEqual(2, len(o['Slices'])) | |
| 2680 self.assertEqual('/instances/%s/file' % i, o['Dicom'][0]) | |
| 2681 self.assertEqual('/instances/%s/file' % j, o['Dicom'][1]) | |
| 2682 self.assertEqual('/instances/%s/frames/0' % i, o['Slices'][0]) | |
| 2683 self.assertEqual('/instances/%s/frames/0' % j, o['Slices'][1]) | |
|
54
c5f8a6b0d85e
test_incoming_movescu_accession
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
53
diff
changeset
|
2684 |
| 68 | 2685 self.assertEqual(2, len(o['SlicesShort'])) |
| 2686 self.assertEqual(i, o['SlicesShort'][0][0]) | |
| 2687 self.assertEqual(0, o['SlicesShort'][0][1]) | |
| 2688 self.assertEqual(1, o['SlicesShort'][0][2]) | |
| 2689 self.assertEqual(j, o['SlicesShort'][1][0]) | |
| 2690 self.assertEqual(0, o['SlicesShort'][1][1]) | |
| 2691 self.assertEqual(1, o['SlicesShort'][1][2]) | |
| 2692 | |
| 2693 | |
|
54
c5f8a6b0d85e
test_incoming_movescu_accession
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
53
diff
changeset
|
2694 |
|
c5f8a6b0d85e
test_incoming_movescu_accession
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
53
diff
changeset
|
2695 def test_incoming_movescu_accession(self): |
|
c5f8a6b0d85e
test_incoming_movescu_accession
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
53
diff
changeset
|
2696 UploadInstance(_REMOTE, 'Knee/T1/IM-0001-0001.dcm') |
|
c5f8a6b0d85e
test_incoming_movescu_accession
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
53
diff
changeset
|
2697 |
|
137
412d5f70447e
testing asynchronous c-move
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parents:
136
diff
changeset
|
2698 # No matching patient, so no job is created |
|
54
c5f8a6b0d85e
test_incoming_movescu_accession
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
53
diff
changeset
|
2699 self.assertEqual(0, len(DoGet(_LOCAL, '/patients'))) |
|
c5f8a6b0d85e
test_incoming_movescu_accession
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
53
diff
changeset
|
2700 CallMoveScu([ '--study', '-k', '0008,0052=STUDY', '-k', 'AccessionNumber=nope' ]) |
|
c5f8a6b0d85e
test_incoming_movescu_accession
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
53
diff
changeset
|
2701 self.assertEqual(0, len(DoGet(_LOCAL, '/patients'))) |
|
c5f8a6b0d85e
test_incoming_movescu_accession
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
53
diff
changeset
|
2702 CallMoveScu([ '--study', '-k', '0008,0052=PATIENT', '-k', 'AccessionNumber=A10003245599' ]) |
|
c5f8a6b0d85e
test_incoming_movescu_accession
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
53
diff
changeset
|
2703 self.assertEqual(0, len(DoGet(_LOCAL, '/patients'))) |
|
137
412d5f70447e
testing asynchronous c-move
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
136
diff
changeset
|
2704 |
|
412d5f70447e
testing asynchronous c-move
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
136
diff
changeset
|
2705 # 1 Matching patient, track the job |
| 138 | 2706 self.assertTrue(MonitorJob(_REMOTE, lambda: CallMoveScu([ |
| 2707 '--study', | |
| 2708 '-k', '0008,0052=STUDY', | |
| 2709 '-k', 'AccessionNumber=A10003245599' | |
| 2710 ]))) | |
|
137
412d5f70447e
testing asynchronous c-move
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
136
diff
changeset
|
2711 |
|
54
c5f8a6b0d85e
test_incoming_movescu_accession
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
53
diff
changeset
|
2712 self.assertEqual(1, len(DoGet(_LOCAL, '/patients'))) |
|
c5f8a6b0d85e
test_incoming_movescu_accession
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
53
diff
changeset
|
2713 |
| 55 | 2714 |
| 2715 def test_dicom_to_json(self): | |
| 2716 i = UploadInstance(_REMOTE, 'PrivateMDNTags.dcm')['ID'] | |
|
60
cd3c7f70f139
test backward compatibility with Orthanc 0.9.4
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
59
diff
changeset
|
2717 j = UploadInstance(_REMOTE, 'PrivateTags.dcm')['ID'] |
|
cd3c7f70f139
test backward compatibility with Orthanc 0.9.4
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
59
diff
changeset
|
2718 |
|
cd3c7f70f139
test backward compatibility with Orthanc 0.9.4
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
59
diff
changeset
|
2719 t = DoGet(_REMOTE, '/instances/%s/tags?simplify' % i) |
|
cd3c7f70f139
test backward compatibility with Orthanc 0.9.4
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
59
diff
changeset
|
2720 with open(GetDatabasePath('PrivateMDNTagsSimplify.json'), 'r') as f: |
|
80
8466dbfcb22b
fix test against dcmtk 3.6.1
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
79
diff
changeset
|
2721 self.assertTrue(CompareTags(t, json.loads(f.read()), [ |
| 123 | 2722 # Tags for compatibility with DCMTK 3.6.0 |
| 2723 'RETIRED_OtherPatientIDs', | |
| 2724 'OtherPatientIDs', | |
| 2725 'ACR_NEMA_2C_VariablePixelDataGroupLength', | |
|
80
8466dbfcb22b
fix test against dcmtk 3.6.1
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
79
diff
changeset
|
2726 ])) |
| 55 | 2727 |
| 2728 t = DoGet(_REMOTE, '/instances/%s/tags' % i) | |
| 2729 with open(GetDatabasePath('PrivateMDNTagsFull.json'), 'r') as f: | |
|
87
4b24faec842b
test_reconstruct_json2 + test_private_tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
86
diff
changeset
|
2730 self.assertTrue(CompareTags(t, json.loads(f.read()), [ |
|
4b24faec842b
test_reconstruct_json2 + test_private_tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
86
diff
changeset
|
2731 ])) |
| 55 | 2732 |
|
60
cd3c7f70f139
test backward compatibility with Orthanc 0.9.4
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
59
diff
changeset
|
2733 t = DoGet(_REMOTE, '/instances/%s/tags?simplify' % j) |
|
cd3c7f70f139
test backward compatibility with Orthanc 0.9.4
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
59
diff
changeset
|
2734 with open(GetDatabasePath('PrivateTagsSimplify.json'), 'r') as f: |
|
80
8466dbfcb22b
fix test against dcmtk 3.6.1
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
79
diff
changeset
|
2735 self.assertTrue(CompareTags(t, json.loads(f.read()), [ |
|
8466dbfcb22b
fix test against dcmtk 3.6.1
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
79
diff
changeset
|
2736 ])) |
|
60
cd3c7f70f139
test backward compatibility with Orthanc 0.9.4
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
59
diff
changeset
|
2737 |
|
cd3c7f70f139
test backward compatibility with Orthanc 0.9.4
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
59
diff
changeset
|
2738 t = DoGet(_REMOTE, '/instances/%s/tags' % j) |
|
cd3c7f70f139
test backward compatibility with Orthanc 0.9.4
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
59
diff
changeset
|
2739 with open(GetDatabasePath('PrivateTagsFull.json'), 'r') as f: |
|
cd3c7f70f139
test backward compatibility with Orthanc 0.9.4
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
59
diff
changeset
|
2740 a = json.loads(f.read()) |
|
65
09fc27e0899a
patch for testing windows builds
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
64
diff
changeset
|
2741 aa = json.dumps(a).replace('2e+022', '2e+22') |
|
09fc27e0899a
patch for testing windows builds
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
64
diff
changeset
|
2742 tt = json.dumps(t).replace('2e+022', '2e+22') |
|
09fc27e0899a
patch for testing windows builds
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
64
diff
changeset
|
2743 self.assertEqual(aa, tt) |
| 57 | 2744 |
| 2745 | |
| 2746 def test_batch_archive(self): | |
| 2747 UploadInstance(_REMOTE, 'Knee/T1/IM-0001-0001.dcm') | |
| 2748 UploadInstance(_REMOTE, 'Knee/T1/IM-0001-0002.dcm') | |
| 2749 UploadInstance(_REMOTE, 'Knee/T2/IM-0001-0001.dcm') | |
| 2750 UploadInstance(_REMOTE, 'Knee/T2/IM-0001-0002.dcm') | |
| 2751 UploadInstance(_REMOTE, 'Brainix/Epi/IM-0001-0001.dcm') | |
| 2752 UploadInstance(_REMOTE, 'Brainix/Epi/IM-0001-0002.dcm') | |
| 2753 UploadInstance(_REMOTE, 'Brainix/Flair/IM-0001-0001.dcm') | |
| 2754 UploadInstance(_REMOTE, 'Brainix/Flair/IM-0001-0002.dcm') | |
| 2755 | |
| 2756 s = DoPost(_REMOTE, '/tools/create-archive', [ ]) | |
| 2757 z = zipfile.ZipFile(StringIO(s), "r") | |
| 2758 self.assertEqual(0, len(z.namelist())) | |
| 2759 | |
| 2760 # One patient | |
| 2761 s = DoPost(_REMOTE, '/tools/create-archive', [ 'ca29faea-b6a0e17f-067743a1-8b778011-a48b2a17' ]) | |
| 2762 z = zipfile.ZipFile(StringIO(s), "r") | |
| 2763 self.assertEqual(4, len(z.namelist())) | |
| 2764 | |
| 2765 # One patient + twice its study + one series from other patient | |
| 2766 s = DoPost(_REMOTE, '/tools/create-archive', [ | |
| 2767 'ca29faea-b6a0e17f-067743a1-8b778011-a48b2a17', | |
| 2768 '0a9b3153-2512774b-2d9580de-1fc3dcf6-3bd83918', | |
| 2769 '1e2c125c-411b8e86-3f4fe68e-a7584dd3-c6da78f0' | |
| 2770 ]) | |
| 2771 z = zipfile.ZipFile(StringIO(s), "r") | |
| 2772 self.assertEqual(6, len(z.namelist())) | |
| 2773 | |
| 2774 # One patient + one series + one instance | |
| 2775 s = DoPost(_REMOTE, '/tools/create-archive', [ | |
| 2776 'ca29faea-b6a0e17f-067743a1-8b778011-a48b2a17', | |
| 2777 '1e2c125c-411b8e86-3f4fe68e-a7584dd3-c6da78f0', | |
| 2778 '1d429ccb-bdcc78a1-7d129d6a-ba4966ed-fe4dbd87' | |
| 2779 ]) | |
| 2780 z = zipfile.ZipFile(StringIO(s), "r") | |
| 2781 self.assertEqual(7, len(z.namelist())) | |
|
59
84378ada15ab
test_decode_brainix_as_jpeg
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
58
diff
changeset
|
2782 |
|
84378ada15ab
test_decode_brainix_as_jpeg
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
58
diff
changeset
|
2783 |
|
84378ada15ab
test_decode_brainix_as_jpeg
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
58
diff
changeset
|
2784 def test_decode_brainix_as_jpeg(self): |
|
84378ada15ab
test_decode_brainix_as_jpeg
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
58
diff
changeset
|
2785 i = UploadInstance(_REMOTE, 'Brainix/Epi/IM-0001-0001.dcm')['ID'] |
|
84378ada15ab
test_decode_brainix_as_jpeg
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
58
diff
changeset
|
2786 |
|
84378ada15ab
test_decode_brainix_as_jpeg
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
58
diff
changeset
|
2787 j = GetImage(_REMOTE, '/instances/%s/preview' % i) |
|
84378ada15ab
test_decode_brainix_as_jpeg
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
58
diff
changeset
|
2788 self.assertEqual('PNG', j.format) |
|
84378ada15ab
test_decode_brainix_as_jpeg
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
58
diff
changeset
|
2789 self.assertEqual(j.size[0], 256) |
|
84378ada15ab
test_decode_brainix_as_jpeg
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
58
diff
changeset
|
2790 self.assertEqual(j.size[1], 256) |
|
84378ada15ab
test_decode_brainix_as_jpeg
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
58
diff
changeset
|
2791 |
|
84378ada15ab
test_decode_brainix_as_jpeg
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
58
diff
changeset
|
2792 j = GetImage(_REMOTE, '/instances/%s/preview' % i, headers = { 'Accept' : '*/*' }) |
|
84378ada15ab
test_decode_brainix_as_jpeg
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
58
diff
changeset
|
2793 self.assertEqual('PNG', j.format) |
|
84378ada15ab
test_decode_brainix_as_jpeg
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
58
diff
changeset
|
2794 |
|
84378ada15ab
test_decode_brainix_as_jpeg
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
58
diff
changeset
|
2795 j = GetImage(_REMOTE, '/instances/%s/preview' % i, headers = { 'Accept' : 'image/*' }) |
|
84378ada15ab
test_decode_brainix_as_jpeg
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
58
diff
changeset
|
2796 self.assertEqual('PNG', j.format) |
|
84378ada15ab
test_decode_brainix_as_jpeg
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
58
diff
changeset
|
2797 |
|
84378ada15ab
test_decode_brainix_as_jpeg
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
58
diff
changeset
|
2798 j = GetImage(_REMOTE, '/instances/%s/preview' % i, headers = { 'Accept' : 'image/png' }) |
|
84378ada15ab
test_decode_brainix_as_jpeg
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
58
diff
changeset
|
2799 self.assertEqual('PNG', j.format) |
|
84378ada15ab
test_decode_brainix_as_jpeg
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
58
diff
changeset
|
2800 |
|
84378ada15ab
test_decode_brainix_as_jpeg
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
58
diff
changeset
|
2801 j = GetImage(_REMOTE, '/instances/%s/preview' % i, headers = { 'Accept' : 'image/jpeg' }) |
|
84378ada15ab
test_decode_brainix_as_jpeg
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
58
diff
changeset
|
2802 self.assertEqual('JPEG', j.format) |
|
84378ada15ab
test_decode_brainix_as_jpeg
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
58
diff
changeset
|
2803 self.assertEqual(j.size[0], 256) |
|
84378ada15ab
test_decode_brainix_as_jpeg
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
58
diff
changeset
|
2804 self.assertEqual(j.size[1], 256) |
|
84378ada15ab
test_decode_brainix_as_jpeg
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
58
diff
changeset
|
2805 |
|
84378ada15ab
test_decode_brainix_as_jpeg
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
58
diff
changeset
|
2806 a = len(DoGet(_REMOTE, '/instances/%s/preview?quality=50' % i, headers = { 'Accept' : 'image/jpeg' })) |
|
84378ada15ab
test_decode_brainix_as_jpeg
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
58
diff
changeset
|
2807 b = len(DoGet(_REMOTE, '/instances/%s/preview' % i, headers = { 'Accept' : 'image/jpeg' })) |
|
84378ada15ab
test_decode_brainix_as_jpeg
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
58
diff
changeset
|
2808 self.assertLess(a, b) |
|
84378ada15ab
test_decode_brainix_as_jpeg
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
58
diff
changeset
|
2809 |
|
84378ada15ab
test_decode_brainix_as_jpeg
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
58
diff
changeset
|
2810 j = GetImage(_REMOTE, '/instances/%s/image-uint8' % i, headers = { 'Accept' : 'image/jpeg' }) |
|
84378ada15ab
test_decode_brainix_as_jpeg
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
58
diff
changeset
|
2811 self.assertEqual('JPEG', j.format) |
|
84378ada15ab
test_decode_brainix_as_jpeg
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
58
diff
changeset
|
2812 |
|
84378ada15ab
test_decode_brainix_as_jpeg
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
58
diff
changeset
|
2813 # 16bit encoding is not supported with JPEG |
|
84378ada15ab
test_decode_brainix_as_jpeg
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
58
diff
changeset
|
2814 self.assertRaises(Exception, lambda: GetImage(_REMOTE, '/instances/%s/image-uint16' % i, headers = { 'Accept' : 'image/jpeg' })) |
|
84378ada15ab
test_decode_brainix_as_jpeg
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
58
diff
changeset
|
2815 self.assertRaises(Exception, lambda: GetImage(_REMOTE, '/instances/%s/image-int16' % i, headers = { 'Accept' : 'image/jpeg' })) |
|
84378ada15ab
test_decode_brainix_as_jpeg
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
58
diff
changeset
|
2816 |
|
84378ada15ab
test_decode_brainix_as_jpeg
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
58
diff
changeset
|
2817 # No matching content type |
|
84378ada15ab
test_decode_brainix_as_jpeg
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
58
diff
changeset
|
2818 self.assertRaises(Exception, lambda: GetImage(_REMOTE, '/instances/%s/preview' % i, headers = { 'Accept' : 'application/pdf' })) |
|
69
83fd88230097
test_media_encodings
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
68
diff
changeset
|
2819 |
|
83fd88230097
test_media_encodings
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
68
diff
changeset
|
2820 |
|
83fd88230097
test_media_encodings
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
68
diff
changeset
|
2821 |
|
83fd88230097
test_media_encodings
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
68
diff
changeset
|
2822 def test_media_encodings(self): |
|
83fd88230097
test_media_encodings
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
68
diff
changeset
|
2823 ascii = UploadInstance(_REMOTE, 'Knee/T1/IM-0001-0001.dcm')['ID'] |
|
83fd88230097
test_media_encodings
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
68
diff
changeset
|
2824 latin1 = UploadInstance(_REMOTE, 'Brainix/Epi/IM-0001-0001.dcm')['ID'] |
|
83fd88230097
test_media_encodings
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
68
diff
changeset
|
2825 latin2 = UploadInstance(_REMOTE, 'MarekLatin2.dcm')['ID'] |
|
83fd88230097
test_media_encodings
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
68
diff
changeset
|
2826 |
|
83fd88230097
test_media_encodings
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
68
diff
changeset
|
2827 tmp = DoPost(_REMOTE, '/tools/create-media', [ascii,latin1,latin2]) |
|
83fd88230097
test_media_encodings
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
68
diff
changeset
|
2828 z = zipfile.ZipFile(StringIO(tmp), "r") |
|
83fd88230097
test_media_encodings
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
68
diff
changeset
|
2829 |
|
83fd88230097
test_media_encodings
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
68
diff
changeset
|
2830 self.assertEqual(4, len(z.namelist())) |
|
83fd88230097
test_media_encodings
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
68
diff
changeset
|
2831 self.assertTrue('IMAGES/IM0' in z.namelist()) |
|
83fd88230097
test_media_encodings
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
68
diff
changeset
|
2832 self.assertTrue('IMAGES/IM1' in z.namelist()) |
|
83fd88230097
test_media_encodings
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
68
diff
changeset
|
2833 self.assertTrue('IMAGES/IM2' in z.namelist()) |
|
83fd88230097
test_media_encodings
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
68
diff
changeset
|
2834 self.assertTrue('DICOMDIR' in z.namelist()) |
|
83fd88230097
test_media_encodings
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
68
diff
changeset
|
2835 |
|
83fd88230097
test_media_encodings
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
68
diff
changeset
|
2836 try: |
|
83fd88230097
test_media_encodings
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
68
diff
changeset
|
2837 os.remove('/tmp/DICOMDIR') |
|
83fd88230097
test_media_encodings
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
68
diff
changeset
|
2838 except: |
|
83fd88230097
test_media_encodings
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
68
diff
changeset
|
2839 # The file does not exist |
|
83fd88230097
test_media_encodings
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
68
diff
changeset
|
2840 pass |
|
83fd88230097
test_media_encodings
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
68
diff
changeset
|
2841 |
|
83fd88230097
test_media_encodings
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
68
diff
changeset
|
2842 z.extract('DICOMDIR', '/tmp') |
|
83fd88230097
test_media_encodings
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
68
diff
changeset
|
2843 a = subprocess.check_output([ FindExecutable('dciodvfy'), '/tmp/DICOMDIR' ], |
|
83fd88230097
test_media_encodings
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
68
diff
changeset
|
2844 stderr = subprocess.STDOUT).split('\n') |
|
83fd88230097
test_media_encodings
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
68
diff
changeset
|
2845 |
|
83fd88230097
test_media_encodings
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
68
diff
changeset
|
2846 a = subprocess.check_output([ FindExecutable('dcentvfy'), '/tmp/DICOMDIR' ], |
|
83fd88230097
test_media_encodings
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
68
diff
changeset
|
2847 stderr = subprocess.STDOUT).split('\n') |
|
83fd88230097
test_media_encodings
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
68
diff
changeset
|
2848 self.assertEqual(1, len(a)) |
|
83fd88230097
test_media_encodings
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
68
diff
changeset
|
2849 self.assertEqual('', a[0]) |
|
83fd88230097
test_media_encodings
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
68
diff
changeset
|
2850 |
|
83fd88230097
test_media_encodings
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
68
diff
changeset
|
2851 a = subprocess.check_output([ FindExecutable('dcm2xml'), '/tmp/DICOMDIR' ]) |
|
83fd88230097
test_media_encodings
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
68
diff
changeset
|
2852 self.assertTrue(re.search('1.3.46.670589.11.17521.5.0.3124.2008081908590448738', a) != None) |
|
83fd88230097
test_media_encodings
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
68
diff
changeset
|
2853 self.assertTrue(re.search('1.3.46.670589.11.0.0.11.4.2.0.8743.5.5396.2006120114333648576', a) != None) |
|
83fd88230097
test_media_encodings
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
68
diff
changeset
|
2854 self.assertTrue(re.search('1.2.826.0.1.3680043.2.1569.1.4.323026757.1700.1399452091.57', a) != None) |
|
83fd88230097
test_media_encodings
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
68
diff
changeset
|
2855 |
|
83fd88230097
test_media_encodings
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
68
diff
changeset
|
2856 os.remove('/tmp/DICOMDIR') |
|
71
48740070cbf1
TDD: tests for ongoing development of counter tags in C-Find
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
70
diff
changeset
|
2857 |
|
48740070cbf1
TDD: tests for ongoing development of counter tags in C-Find
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
70
diff
changeset
|
2858 |
|
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|
2859 def test_findscu_counters(self): |
|
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diff
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|
2860 UploadInstance(_REMOTE, 'Comunix/Ct/IM-0001-0001.dcm') |
|
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diff
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|
2861 UploadInstance(_REMOTE, 'Comunix/Pet/IM-0001-0001.dcm') |
|
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diff
changeset
|
2862 UploadInstance(_REMOTE, 'Comunix/Pet/IM-0001-0002.dcm') |
|
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diff
changeset
|
2863 |
|
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parents:
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diff
changeset
|
2864 i = CallFindScu([ '-k', '0008,0052=PATIENT', '-k', 'NumberOfPatientRelatedStudies' ]) |
|
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diff
changeset
|
2865 s = re.findall('\(0020,1200\).*?\[(.*?)\]', i) |
|
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diff
changeset
|
2866 self.assertEqual(1, len(s)) |
|
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diff
changeset
|
2867 self.assertTrue('1 ' in s) |
|
48740070cbf1
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parents:
70
diff
changeset
|
2868 |
|
48740070cbf1
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Sebastien Jodogne <s.jodogne@gmail.com>
parents:
70
diff
changeset
|
2869 i = CallFindScu([ '-k', '0008,0052=PATIENT', '-k', 'NumberOfPatientRelatedSeries' ]) |
|
48740070cbf1
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Sebastien Jodogne <s.jodogne@gmail.com>
parents:
70
diff
changeset
|
2870 s = re.findall('\(0020,1202\).*?\[(.*?)\]', i) |
|
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Sebastien Jodogne <s.jodogne@gmail.com>
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diff
changeset
|
2871 self.assertEqual(1, len(s)) |
|
48740070cbf1
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Sebastien Jodogne <s.jodogne@gmail.com>
parents:
70
diff
changeset
|
2872 self.assertTrue('2 ' in s) |
|
48740070cbf1
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Sebastien Jodogne <s.jodogne@gmail.com>
parents:
70
diff
changeset
|
2873 |
|
48740070cbf1
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Sebastien Jodogne <s.jodogne@gmail.com>
parents:
70
diff
changeset
|
2874 i = CallFindScu([ '-k', '0008,0052=PATIENT', '-k', 'NumberOfPatientRelatedInstances' ]) |
|
48740070cbf1
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Sebastien Jodogne <s.jodogne@gmail.com>
parents:
70
diff
changeset
|
2875 s = re.findall('\(0020,1204\).*?\[(.*?)\]', i) |
|
48740070cbf1
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Sebastien Jodogne <s.jodogne@gmail.com>
parents:
70
diff
changeset
|
2876 self.assertEqual(1, len(s)) |
|
48740070cbf1
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Sebastien Jodogne <s.jodogne@gmail.com>
parents:
70
diff
changeset
|
2877 self.assertTrue('3 ' in s) |
|
48740070cbf1
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Sebastien Jodogne <s.jodogne@gmail.com>
parents:
70
diff
changeset
|
2878 |
|
48740070cbf1
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Sebastien Jodogne <s.jodogne@gmail.com>
parents:
70
diff
changeset
|
2879 i = CallFindScu([ '-k', '0008,0052=STUDY', '-k', 'NumberOfStudyRelatedSeries' ]) |
|
48740070cbf1
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Sebastien Jodogne <s.jodogne@gmail.com>
parents:
70
diff
changeset
|
2880 s = re.findall('\(0020,1206\).*?\[(.*?)\]', i) |
|
48740070cbf1
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Sebastien Jodogne <s.jodogne@gmail.com>
parents:
70
diff
changeset
|
2881 self.assertEqual(1, len(s)) |
|
48740070cbf1
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Sebastien Jodogne <s.jodogne@gmail.com>
parents:
70
diff
changeset
|
2882 self.assertTrue('2 ' in s) |
|
48740070cbf1
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Sebastien Jodogne <s.jodogne@gmail.com>
parents:
70
diff
changeset
|
2883 |
|
48740070cbf1
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Sebastien Jodogne <s.jodogne@gmail.com>
parents:
70
diff
changeset
|
2884 i = CallFindScu([ '-k', '0008,0052=STUDY', '-k', 'NumberOfStudyRelatedInstances' ]) |
|
48740070cbf1
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Sebastien Jodogne <s.jodogne@gmail.com>
parents:
70
diff
changeset
|
2885 s = re.findall('\(0020,1208\).*?\[(.*?)\]', i) |
|
48740070cbf1
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Sebastien Jodogne <s.jodogne@gmail.com>
parents:
70
diff
changeset
|
2886 self.assertEqual(1, len(s)) |
|
48740070cbf1
TDD: tests for ongoing development of counter tags in C-Find
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
70
diff
changeset
|
2887 self.assertTrue('3 ' in s) |
|
48740070cbf1
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Sebastien Jodogne <s.jodogne@gmail.com>
parents:
70
diff
changeset
|
2888 |
|
48740070cbf1
TDD: tests for ongoing development of counter tags in C-Find
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
70
diff
changeset
|
2889 i = CallFindScu([ '-k', '0008,0052=SERIES', '-k', 'NumberOfSeriesRelatedInstances' ]) |
|
48740070cbf1
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Sebastien Jodogne <s.jodogne@gmail.com>
parents:
70
diff
changeset
|
2890 s = re.findall('\(0020,1209\).*?\[(.*?)\]', i) |
|
48740070cbf1
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Sebastien Jodogne <s.jodogne@gmail.com>
parents:
70
diff
changeset
|
2891 self.assertEqual(2, len(s)) |
|
48740070cbf1
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Sebastien Jodogne <s.jodogne@gmail.com>
parents:
70
diff
changeset
|
2892 self.assertTrue('1 ' in s) |
|
48740070cbf1
TDD: tests for ongoing development of counter tags in C-Find
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
70
diff
changeset
|
2893 self.assertTrue('2 ' in s) |
|
48740070cbf1
TDD: tests for ongoing development of counter tags in C-Find
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
70
diff
changeset
|
2894 |
|
48740070cbf1
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Sebastien Jodogne <s.jodogne@gmail.com>
parents:
70
diff
changeset
|
2895 i = CallFindScu([ '-k', '0008,0052=STUDY', '-k', 'ModalitiesInStudy' ]) |
|
48740070cbf1
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Sebastien Jodogne <s.jodogne@gmail.com>
parents:
70
diff
changeset
|
2896 s = re.findall('\(0008,0061\).*?\[(.*?)\]', i) |
|
48740070cbf1
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Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
changeset
|
2897 self.assertEqual(1, len(s)) |
|
48740070cbf1
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Sebastien Jodogne <s.jodogne@gmail.com>
parents:
70
diff
changeset
|
2898 t = map(lambda x: x.strip(), s[0].split('\\')) |
|
48740070cbf1
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Sebastien Jodogne <s.jodogne@gmail.com>
parents:
70
diff
changeset
|
2899 self.assertTrue('PT' in t) |
|
48740070cbf1
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Sebastien Jodogne <s.jodogne@gmail.com>
parents:
70
diff
changeset
|
2900 self.assertTrue('CT' in t) |
|
48740070cbf1
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changeset
|
2901 |
|
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parents:
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diff
changeset
|
2902 i = CallFindScu([ '-k', '0008,0052=STUDY', '-k', 'SOPClassesInStudy' ]) |
|
48740070cbf1
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parents:
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changeset
|
2903 s = re.findall('\(0008,0062\).*?\[(.*?)\]', i) |
|
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diff
changeset
|
2904 self.assertEqual(1, len(s)) |
|
176
48cc188ffb09
strip trailing 0 char that appears with some findscu versions
am@osimis.io
parents:
175
diff
changeset
|
2905 t = map(lambda x: x.strip('\x00'), s[0].split('\\')) |
|
71
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changeset
|
2906 self.assertTrue('1.2.840.10008.5.1.4.1.1.2' in t) |
|
48740070cbf1
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diff
changeset
|
2907 self.assertTrue('1.2.840.10008.5.1.4.1.1.128' in t) |
|
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changeset
|
2908 |
|
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diff
changeset
|
2909 |
|
78
b89af51797ff
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parents:
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diff
changeset
|
2910 def test_decode_transfer_syntax(self): |
|
b89af51797ff
test_decode_transfer_syntax
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parents:
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diff
changeset
|
2911 def Check(t, md5): |
|
b89af51797ff
test_decode_transfer_syntax
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parents:
74
diff
changeset
|
2912 i = UploadInstance(_REMOTE, 'TransferSyntaxes/%s.dcm' % t)['ID'] |
|
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diff
changeset
|
2913 |
|
89
74b7b9aed5f8
test TransferSyntax metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
87
diff
changeset
|
2914 if t != '1.2.840.10008.1.2': # This file has no meta header |
|
74b7b9aed5f8
test TransferSyntax metadata
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parents:
87
diff
changeset
|
2915 transferSyntax = DoGet(_REMOTE, '/instances/%s/metadata/TransferSyntax' % i) |
|
74b7b9aed5f8
test TransferSyntax metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
87
diff
changeset
|
2916 self.assertEqual(t, transferSyntax) |
|
74b7b9aed5f8
test TransferSyntax metadata
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parents:
87
diff
changeset
|
2917 |
|
78
b89af51797ff
test_decode_transfer_syntax
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parents:
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diff
changeset
|
2918 if md5 == None: |
|
b89af51797ff
test_decode_transfer_syntax
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parents:
74
diff
changeset
|
2919 self.assertRaises(Exception, lambda: DoGet(_REMOTE, '/instances/%s/preview' % i)) |
|
b89af51797ff
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diff
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|
2920 else: |
|
b89af51797ff
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parents:
74
diff
changeset
|
2921 m = ComputeMD5(DoGet(_REMOTE, '/instances/%s/preview' % i)) |
|
b89af51797ff
test_decode_transfer_syntax
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parents:
74
diff
changeset
|
2922 self.assertEqual(m, md5) |
|
b89af51797ff
test_decode_transfer_syntax
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
74
diff
changeset
|
2923 |
|
b89af51797ff
test_decode_transfer_syntax
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
74
diff
changeset
|
2924 Check('1.2.840.10008.1.2.1', 'fae08d5415c4c0cd2cdbae4522408631') |
|
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parents:
74
diff
changeset
|
2925 Check('1.2.840.10008.1.2.2', 'f3d9784768b8feb54d6a50b6d5c37682') |
|
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parents:
74
diff
changeset
|
2926 Check('1.2.840.10008.1.2.4.50', '496326046974eea718dbc16b997c646b') |
|
b89af51797ff
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Sebastien Jodogne <s.jodogne@gmail.com>
parents:
74
diff
changeset
|
2927 Check('1.2.840.10008.1.2.4.51', 'ccbe75909fe5c9f7361b48416a53fc41') |
|
b89af51797ff
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Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
changeset
|
2928 Check('1.2.840.10008.1.2.4.57', '7bbefe11d976b1be4e568915c6a82fc3') |
|
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test_decode_transfer_syntax
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74
diff
changeset
|
2929 Check('1.2.840.10008.1.2.4.70', '7132cfbc457305b04b59787030c785d2') |
|
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74
diff
changeset
|
2930 Check('1.2.840.10008.1.2.4.80', '6ff51ae525d362e0d04f550a64075a0e') |
|
b89af51797ff
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74
diff
changeset
|
2931 Check('1.2.840.10008.1.2.4.81', '801579ae7cbf28e604ea74f2c99fa2ca') |
|
b89af51797ff
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diff
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|
2932 Check('1.2.840.10008.1.2.5', '6ff51ae525d362e0d04f550a64075a0e') # RLE, supported since Orthanc 1.0.1 |
|
b89af51797ff
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74
diff
changeset
|
2933 Check('1.2.840.10008.1.2', 'd54aed9f67a100984b42942cc2e9939b') |
|
b89af51797ff
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74
diff
changeset
|
2934 Check('1.2.840.10008.1.2.4.90', None) # JPEG-2000 image, not supported |
|
b89af51797ff
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diff
changeset
|
2935 Check('1.2.840.10008.1.2.4.91', None) # JPEG-2000 image, not supported |
| 79 | 2936 |
| 2937 | |
| 2938 def test_raw_frame(self): | |
| 2939 s = UploadInstance(_REMOTE, 'Issue22.dcm')['ID'] | |
| 2940 self.assertEqual(24, len(DoGet(_REMOTE, '/instances/%s/frames' % s))) | |
| 2941 a = DoGet(_REMOTE, '/instances/%s/frames/0/raw' % s) | |
| 2942 self.assertEqual(512 * 512 * 2, len(a)) | |
| 2943 self.assertEqual(512 * 512 * 2, len(DoGet(_REMOTE, '/instances/%s/frames/23/raw' % s))) | |
| 2944 self.assertRaises(Exception, lambda: DoGet(_REMOTE, '/instances/%s/frames/24/raw' % s)) | |
| 2945 self.assertEqual('1914287dc4d958eca21fdaacfb3482fa', ComputeMD5(a)) | |
| 2946 | |
| 2947 s = UploadInstance(_REMOTE, 'Multiframe.dcm')['ID'] | |
| 2948 self.assertEqual(76, len(DoGet(_REMOTE, '/instances/%s/frames' % s))) | |
| 2949 self.assertEqual(186274, len(DoGet(_REMOTE, '/instances/%s/frames/0/raw' % s))) | |
| 2950 self.assertEqual(189424, len(DoGet(_REMOTE, '/instances/%s/frames/75/raw' % s))) | |
| 2951 self.assertRaises(Exception, lambda: DoGet(_REMOTE, '/instances/%s/frames/76/raw' % s)) | |
| 2952 im = GetImage(_REMOTE, '/instances/%s/frames/0/raw' % s) | |
| 2953 self.assertEqual("L", im.mode) | |
| 2954 self.assertEqual(512, im.size[0]) | |
| 2955 self.assertEqual(512, im.size[1]) | |
| 2956 | |
| 2957 # Test an image with 2 JPEG frames spread over multiple fragments | |
| 2958 s = UploadInstance(_REMOTE, 'LenaTwiceWithFragments.dcm')['ID'] | |
| 2959 self.assertEqual(2, len(DoGet(_REMOTE, '/instances/%s/frames' % s))) | |
| 2960 a = DoGet(_REMOTE, '/instances/%s/frames/0/raw' % s) | |
| 2961 b = DoGet(_REMOTE, '/instances/%s/frames/1/raw' % s) | |
| 2962 self.assertEqual(69214, len(a)) | |
| 2963 self.assertEqual(ComputeMD5(a), ComputeMD5(b)) | |
| 2964 self.assertRaises(Exception, lambda: DoGet(_REMOTE, '/instances/%s/frames/2/raw' % s)) | |
| 2965 im = GetImage(_REMOTE, '/instances/%s/frames/0/raw' % s) | |
| 2966 self.assertEqual("RGB", im.mode) | |
| 2967 self.assertEqual(512, im.size[0]) | |
| 2968 self.assertEqual(512, im.size[1]) | |
| 2969 im = GetImage(_REMOTE, '/instances/%s/frames/0/preview' % s) | |
| 2970 self.assertEqual("RGB", im.mode) | |
| 2971 self.assertEqual(512, im.size[0]) | |
| 2972 self.assertEqual(512, im.size[1]) | |
| 81 | 2973 |
| 2974 | |
| 2975 | |
| 2976 def test_rest_movescu(self): | |
| 2977 self.assertEqual(0, len(DoGet(_REMOTE, '/patients'))) | |
| 2978 | |
| 2979 # Upload 4 instances | |
| 2980 UploadInstance(_REMOTE, 'Brainix/Flair/IM-0001-0001.dcm') | |
| 2981 UploadInstance(_REMOTE, 'Brainix/Flair/IM-0001-0002.dcm') | |
| 2982 UploadInstance(_REMOTE, 'Brainix/Epi/IM-0001-0001.dcm') | |
| 2983 UploadInstance(_REMOTE, 'Knee/T2/IM-0001-0001.dcm') | |
| 2984 | |
| 2985 self.assertEqual(2, len(DoGet(_REMOTE, '/patients'))) | |
| 2986 for p in DoGet(_REMOTE, '/patients'): | |
| 2987 DoPost(_REMOTE, '/modalities/orthanctest/store', p) | |
| 2988 DoDelete(_REMOTE, '/patients/%s' % p) | |
| 2989 | |
| 2990 self.assertEqual(0, len(DoGet(_REMOTE, '/patients'))) | |
| 2991 | |
| 2992 # Upload instance Brainix/Flair/IM-0001-0001.dcm | |
| 2993 DoPost(_REMOTE, '/modalities/orthanctest/move', { 'Level' : 'Instance', | |
| 2994 'Resources' : [ | |
| 2995 { | |
| 2996 'StudyInstanceUID' : '2.16.840.1.113669.632.20.1211.10000357775', | |
| 2997 'SeriesInstanceUID' : '1.3.46.670589.11.0.0.11.4.2.0.8743.5.5396.2006120114285654497', | |
| 2998 'SOPInstanceUID' : '1.3.46.670589.11.0.0.11.4.2.0.8743.5.5396.2006120114314079549', | |
| 2999 } | |
| 3000 ]}) | |
| 3001 | |
| 3002 # Upload series Brainix/Flair/* | |
| 3003 self.assertEqual(1, len(DoGet(_REMOTE, '/patients'))) | |
| 3004 self.assertEqual(1, len(DoGet(_REMOTE, '/studies'))) | |
| 3005 self.assertEqual(1, len(DoGet(_REMOTE, '/series'))) | |
| 3006 self.assertEqual(1, len(DoGet(_REMOTE, '/instances'))) | |
| 3007 | |
| 3008 DoPost(_REMOTE, '/modalities/orthanctest/move', { 'Level' : 'Series', | |
| 3009 'Resources' : [ | |
| 3010 { | |
| 3011 'StudyInstanceUID' : '2.16.840.1.113669.632.20.1211.10000357775', | |
| 3012 'SeriesInstanceUID' : '1.3.46.670589.11.0.0.11.4.2.0.8743.5.5396.2006120114285654497', | |
| 3013 } | |
| 3014 ]}) | |
| 3015 self.assertEqual(1, len(DoGet(_REMOTE, '/patients'))) | |
| 3016 self.assertEqual(1, len(DoGet(_REMOTE, '/studies'))) | |
| 3017 self.assertEqual(1, len(DoGet(_REMOTE, '/series'))) | |
| 3018 self.assertEqual(2, len(DoGet(_REMOTE, '/instances'))) | |
| 3019 | |
| 3020 # Upload series Brainix/Epi/* | |
| 3021 DoPost(_REMOTE, '/modalities/orthanctest/move', { 'Level' : 'Series', | |
| 3022 'Resources' : [ | |
| 3023 { | |
| 3024 'StudyInstanceUID' : '2.16.840.1.113669.632.20.1211.10000357775', | |
| 3025 'SeriesInstanceUID' : '1.3.46.670589.11.0.0.11.4.2.0.8743.5.5396.2006120114314125550', | |
| 3026 } | |
| 3027 ]}) | |
| 3028 self.assertEqual(1, len(DoGet(_REMOTE, '/patients'))) | |
| 3029 self.assertEqual(1, len(DoGet(_REMOTE, '/studies'))) | |
| 3030 self.assertEqual(2, len(DoGet(_REMOTE, '/series'))) | |
| 3031 self.assertEqual(3, len(DoGet(_REMOTE, '/instances'))) | |
| 3032 | |
| 3033 # Upload study Knee/* | |
| 3034 DoPost(_REMOTE, '/modalities/orthanctest/move', { 'Level' : 'Study', | |
| 3035 'Resources' : [ | |
| 3036 { | |
| 3037 'StudyInstanceUID' : '2.16.840.1.113669.632.20.121711.10000160881', | |
| 3038 } | |
| 3039 ]}) | |
| 3040 self.assertEqual(2, len(DoGet(_REMOTE, '/patients'))) | |
| 3041 self.assertEqual(2, len(DoGet(_REMOTE, '/studies'))) | |
| 3042 self.assertEqual(3, len(DoGet(_REMOTE, '/series'))) | |
| 3043 self.assertEqual(4, len(DoGet(_REMOTE, '/instances'))) | |
| 3044 | |
| 3045 # Reset | |
| 3046 for p in DoGet(_REMOTE, '/patients'): | |
| 3047 DoDelete(_REMOTE, '/patients/%s' % p) | |
| 3048 | |
| 3049 self.assertEqual(0, len(DoGet(_REMOTE, '/patients'))) | |
| 3050 | |
| 3051 | |
| 3052 # Upload all at once | |
| 3053 DoPost(_REMOTE, '/modalities/orthanctest/move', { 'Level' : 'Study', | |
| 3054 'Resources' : [ | |
| 3055 { | |
| 3056 'StudyInstanceUID' : '2.16.840.1.113669.632.20.121711.10000160881', | |
| 3057 }, | |
| 3058 { | |
| 3059 'StudyInstanceUID' : '2.16.840.1.113669.632.20.1211.10000357775', | |
| 3060 } | |
| 3061 ]}) | |
| 3062 self.assertEqual(2, len(DoGet(_REMOTE, '/patients'))) | |
| 3063 self.assertEqual(2, len(DoGet(_REMOTE, '/studies'))) | |
| 3064 self.assertEqual(3, len(DoGet(_REMOTE, '/series'))) | |
| 3065 self.assertEqual(4, len(DoGet(_REMOTE, '/instances'))) | |
| 3066 | |
|
86
0401ef51f5c1
test_reconstruct_json
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
83
diff
changeset
|
3067 |
|
0401ef51f5c1
test_reconstruct_json
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
83
diff
changeset
|
3068 |
|
0401ef51f5c1
test_reconstruct_json
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
83
diff
changeset
|
3069 def test_reconstruct_json(self): |
|
0401ef51f5c1
test_reconstruct_json
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
83
diff
changeset
|
3070 self.assertEqual(0, len(DoGet(_REMOTE, '/patients'))) |
|
0401ef51f5c1
test_reconstruct_json
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
83
diff
changeset
|
3071 |
|
0401ef51f5c1
test_reconstruct_json
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
83
diff
changeset
|
3072 instance = UploadInstance(_REMOTE, 'DummyCT.dcm')['ID'] |
|
0401ef51f5c1
test_reconstruct_json
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
83
diff
changeset
|
3073 first = DoGet(_REMOTE, '/instances/%s/tags' % instance) |
|
0401ef51f5c1
test_reconstruct_json
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
83
diff
changeset
|
3074 |
|
0401ef51f5c1
test_reconstruct_json
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
83
diff
changeset
|
3075 self.assertEqual('TWINOW', first['0008,1010']['Value']) |
|
0401ef51f5c1
test_reconstruct_json
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
83
diff
changeset
|
3076 self.assertEqual(2, len(DoGet(_REMOTE, '/instances/%s/attachments' % instance))) |
|
0401ef51f5c1
test_reconstruct_json
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
83
diff
changeset
|
3077 |
|
0401ef51f5c1
test_reconstruct_json
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
83
diff
changeset
|
3078 # Cannot delete the "DICOM" attachment |
|
0401ef51f5c1
test_reconstruct_json
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
83
diff
changeset
|
3079 self.assertRaises(Exception, lambda: DoDelete(_REMOTE, '/instances/%s/attachments/dicom' % instance)) |
|
0401ef51f5c1
test_reconstruct_json
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
83
diff
changeset
|
3080 |
|
0401ef51f5c1
test_reconstruct_json
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
83
diff
changeset
|
3081 # Can delete the "DICOM as JSON" attachment |
|
0401ef51f5c1
test_reconstruct_json
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
83
diff
changeset
|
3082 r = DoDelete(_REMOTE, '/instances/%s/attachments/dicom-as-json' % instance) |
|
0401ef51f5c1
test_reconstruct_json
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
83
diff
changeset
|
3083 self.assertTrue(type(r) is dict and len(r) == 0) |
|
0401ef51f5c1
test_reconstruct_json
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
83
diff
changeset
|
3084 |
|
0401ef51f5c1
test_reconstruct_json
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
83
diff
changeset
|
3085 # Only the "DICOM" attachment subsists |
|
0401ef51f5c1
test_reconstruct_json
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
83
diff
changeset
|
3086 self.assertEqual(1, len(DoGet(_REMOTE, '/instances/%s/attachments' % instance))) |
|
0401ef51f5c1
test_reconstruct_json
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
83
diff
changeset
|
3087 |
|
0401ef51f5c1
test_reconstruct_json
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
83
diff
changeset
|
3088 # Cannot manually reconstruct the "DICOM as JSON" attachment |
|
0401ef51f5c1
test_reconstruct_json
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
83
diff
changeset
|
3089 self.assertRaises(Exception, lambda: DoPut(_REMOTE, '/patients/%s/attachments/dicom-as-json' % patient, 'hello')) |
|
0401ef51f5c1
test_reconstruct_json
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
83
diff
changeset
|
3090 |
|
0401ef51f5c1
test_reconstruct_json
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
83
diff
changeset
|
3091 # Transparently reconstruct the "DICOM as JSON" attachment |
|
0401ef51f5c1
test_reconstruct_json
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
83
diff
changeset
|
3092 self.assertRaises(Exception, lambda: DoGet(_REMOTE, '/instances/%s/attachments/dicom-as-json' % instance)) |
|
0401ef51f5c1
test_reconstruct_json
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
83
diff
changeset
|
3093 second = DoGet(_REMOTE, '/instances/%s/tags' % instance) |
|
0401ef51f5c1
test_reconstruct_json
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
83
diff
changeset
|
3094 self.assertEqual(2, len(DoGet(_REMOTE, '/instances/%s/attachments' % instance))) |
|
0401ef51f5c1
test_reconstruct_json
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
83
diff
changeset
|
3095 |
|
0401ef51f5c1
test_reconstruct_json
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
83
diff
changeset
|
3096 third = DoGet(_REMOTE, '/instances/%s/attachments/dicom-as-json/data' % instance) |
|
0401ef51f5c1
test_reconstruct_json
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
83
diff
changeset
|
3097 self.assertEqual(str(first), str(second)) |
|
0401ef51f5c1
test_reconstruct_json
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
83
diff
changeset
|
3098 self.assertEqual(str(first), str(third)) |
|
87
4b24faec842b
test_reconstruct_json2 + test_private_tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
86
diff
changeset
|
3099 |
|
4b24faec842b
test_reconstruct_json2 + test_private_tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
86
diff
changeset
|
3100 |
|
4b24faec842b
test_reconstruct_json2 + test_private_tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
86
diff
changeset
|
3101 def test_reconstruct_json2(self): |
|
4b24faec842b
test_reconstruct_json2 + test_private_tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
86
diff
changeset
|
3102 self.assertEqual(0, len(DoGet(_REMOTE, '/patients'))) |
|
4b24faec842b
test_reconstruct_json2 + test_private_tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
86
diff
changeset
|
3103 |
|
4b24faec842b
test_reconstruct_json2 + test_private_tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
86
diff
changeset
|
3104 a = UploadInstance(_REMOTE, 'Brainix/Flair/IM-0001-0001.dcm')['ID'] |
|
4b24faec842b
test_reconstruct_json2 + test_private_tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
86
diff
changeset
|
3105 b = UploadInstance(_REMOTE, 'Knee/T2/IM-0001-0001.dcm')['ID'] |
|
4b24faec842b
test_reconstruct_json2 + test_private_tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
86
diff
changeset
|
3106 |
|
4b24faec842b
test_reconstruct_json2 + test_private_tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
86
diff
changeset
|
3107 self.assertEqual('BRAINIX', DoGet(_REMOTE, '/instances/%s/tags?simplify' % a)['PatientName']) |
|
4b24faec842b
test_reconstruct_json2 + test_private_tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
86
diff
changeset
|
3108 self.assertEqual('KNEE', DoGet(_REMOTE, '/instances/%s/tags?simplify' % b)['PatientName']) |
|
4b24faec842b
test_reconstruct_json2 + test_private_tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
86
diff
changeset
|
3109 |
|
4b24faec842b
test_reconstruct_json2 + test_private_tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
86
diff
changeset
|
3110 self.assertEqual(2, len(DoGet(_REMOTE, '/instances/%s/attachments' % a))) |
|
4b24faec842b
test_reconstruct_json2 + test_private_tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
86
diff
changeset
|
3111 self.assertEqual(2, len(DoGet(_REMOTE, '/instances/%s/attachments' % b))) |
|
4b24faec842b
test_reconstruct_json2 + test_private_tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
86
diff
changeset
|
3112 |
|
4b24faec842b
test_reconstruct_json2 + test_private_tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
86
diff
changeset
|
3113 DoPost(_REMOTE, '/tools/invalidate-tags', '', 'text/plain') |
|
4b24faec842b
test_reconstruct_json2 + test_private_tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
86
diff
changeset
|
3114 |
|
4b24faec842b
test_reconstruct_json2 + test_private_tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
86
diff
changeset
|
3115 self.assertEqual(1, len(DoGet(_REMOTE, '/instances/%s/attachments' % a))) |
|
4b24faec842b
test_reconstruct_json2 + test_private_tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
86
diff
changeset
|
3116 self.assertEqual(1, len(DoGet(_REMOTE, '/instances/%s/attachments' % b))) |
|
4b24faec842b
test_reconstruct_json2 + test_private_tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
86
diff
changeset
|
3117 |
|
4b24faec842b
test_reconstruct_json2 + test_private_tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
86
diff
changeset
|
3118 self.assertEqual('BRAINIX', DoGet(_REMOTE, '/instances/%s/tags?simplify' % a)['PatientName']) |
|
4b24faec842b
test_reconstruct_json2 + test_private_tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
86
diff
changeset
|
3119 self.assertEqual('KNEE', DoGet(_REMOTE, '/instances/%s/tags?simplify' % b)['PatientName']) |
|
4b24faec842b
test_reconstruct_json2 + test_private_tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
86
diff
changeset
|
3120 |
|
4b24faec842b
test_reconstruct_json2 + test_private_tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
86
diff
changeset
|
3121 self.assertEqual(2, len(DoGet(_REMOTE, '/instances/%s/attachments' % a))) |
|
4b24faec842b
test_reconstruct_json2 + test_private_tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
86
diff
changeset
|
3122 self.assertEqual(2, len(DoGet(_REMOTE, '/instances/%s/attachments' % b))) |
|
4b24faec842b
test_reconstruct_json2 + test_private_tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
86
diff
changeset
|
3123 |
|
4b24faec842b
test_reconstruct_json2 + test_private_tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
86
diff
changeset
|
3124 |
|
4b24faec842b
test_reconstruct_json2 + test_private_tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
86
diff
changeset
|
3125 def test_private_tags(self): |
|
4b24faec842b
test_reconstruct_json2 + test_private_tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
86
diff
changeset
|
3126 i = UploadInstance(_REMOTE, 'PrivateMDNTags.dcm')['ID'] |
|
4b24faec842b
test_reconstruct_json2 + test_private_tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
86
diff
changeset
|
3127 t = DoGet(_REMOTE, '/instances/%s/tags?simplify' % i) |
|
4b24faec842b
test_reconstruct_json2 + test_private_tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
86
diff
changeset
|
3128 self.assertEqual('1.2.840.113704.1.111.6320.1342451261.21', t['PET-CT Multi Modality Name']) |
|
4b24faec842b
test_reconstruct_json2 + test_private_tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
86
diff
changeset
|
3129 self.assertEqual('p37s0_na_ctac.img', t['Original Image Filename']) |
|
4b24faec842b
test_reconstruct_json2 + test_private_tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
86
diff
changeset
|
3130 |
|
92
dbcbffb889da
test_findscu_encoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
89
diff
changeset
|
3131 |
|
dbcbffb889da
test_findscu_encoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
89
diff
changeset
|
3132 def test_findscu_encoding(self): |
|
dbcbffb889da
test_findscu_encoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
89
diff
changeset
|
3133 # Check out ../Database/Encodings/Generate.sh |
|
dbcbffb889da
test_findscu_encoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
89
diff
changeset
|
3134 TEST = u'Test-éüäöòДΘĝדصķћ๛ﾈİ' |
|
dbcbffb889da
test_findscu_encoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
89
diff
changeset
|
3135 ENCODINGS = { |
|
dbcbffb889da
test_findscu_encoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
89
diff
changeset
|
3136 'Arabic' : [ 'ISO_IR 127' ], |
|
dbcbffb889da
test_findscu_encoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
89
diff
changeset
|
3137 'Ascii' : [ 'ISO_IR 6' ], # More accurately, ISO 646 |
|
dbcbffb889da
test_findscu_encoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
89
diff
changeset
|
3138 'Cyrillic' : [ 'ISO_IR 144' ], |
|
dbcbffb889da
test_findscu_encoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
89
diff
changeset
|
3139 'Greek' : [ 'ISO_IR 126' ], |
|
dbcbffb889da
test_findscu_encoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
89
diff
changeset
|
3140 'Hebrew' : [ 'ISO_IR 138' ], |
|
dbcbffb889da
test_findscu_encoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
89
diff
changeset
|
3141 'Japanese' : [ 'ISO_IR 13', 'shift-jis' ], |
|
dbcbffb889da
test_findscu_encoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
89
diff
changeset
|
3142 'Latin1' : [ 'ISO_IR 100' ], |
|
dbcbffb889da
test_findscu_encoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
89
diff
changeset
|
3143 'Latin2' : [ 'ISO_IR 101' ], |
|
dbcbffb889da
test_findscu_encoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
89
diff
changeset
|
3144 'Latin3' : [ 'ISO_IR 109' ], |
|
dbcbffb889da
test_findscu_encoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
89
diff
changeset
|
3145 'Latin4' : [ 'ISO_IR 110' ], |
|
dbcbffb889da
test_findscu_encoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
89
diff
changeset
|
3146 'Latin5' : [ 'ISO_IR 148' ], |
|
dbcbffb889da
test_findscu_encoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
89
diff
changeset
|
3147 'Thai' : [ 'ISO_IR 166', 'tis-620' ], |
|
dbcbffb889da
test_findscu_encoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
89
diff
changeset
|
3148 'Utf8' : [ 'ISO_IR 192' ], |
|
dbcbffb889da
test_findscu_encoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
89
diff
changeset
|
3149 } |
|
dbcbffb889da
test_findscu_encoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
89
diff
changeset
|
3150 |
|
dbcbffb889da
test_findscu_encoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
89
diff
changeset
|
3151 for name in ENCODINGS.iterkeys(): |
|
dbcbffb889da
test_findscu_encoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
89
diff
changeset
|
3152 if len(ENCODINGS[name]) == 1: |
|
dbcbffb889da
test_findscu_encoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
89
diff
changeset
|
3153 ENCODINGS[name].append(name.lower()) |
|
dbcbffb889da
test_findscu_encoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
89
diff
changeset
|
3154 |
|
dbcbffb889da
test_findscu_encoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
89
diff
changeset
|
3155 UploadInstance(_REMOTE, 'Encodings/Lena-utf8.dcm') |
|
dbcbffb889da
test_findscu_encoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
89
diff
changeset
|
3156 |
|
dbcbffb889da
test_findscu_encoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
89
diff
changeset
|
3157 for name in ENCODINGS.iterkeys(): |
|
dbcbffb889da
test_findscu_encoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
89
diff
changeset
|
3158 self.assertEqual(name, DoPut(_REMOTE, '/tools/default-encoding', name)) |
|
dbcbffb889da
test_findscu_encoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
89
diff
changeset
|
3159 self.assertEqual(name, DoGet(_REMOTE, '/tools/default-encoding')) |
|
dbcbffb889da
test_findscu_encoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
89
diff
changeset
|
3160 |
|
dbcbffb889da
test_findscu_encoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
89
diff
changeset
|
3161 i = CallFindScu([ '-k', '0008,0052=STUDY', |
|
dbcbffb889da
test_findscu_encoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
89
diff
changeset
|
3162 '-k', 'SpecificCharacterSet', |
|
dbcbffb889da
test_findscu_encoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
89
diff
changeset
|
3163 '-k', 'PatientName' ]) |
|
dbcbffb889da
test_findscu_encoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
89
diff
changeset
|
3164 |
|
dbcbffb889da
test_findscu_encoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
89
diff
changeset
|
3165 characterSet = re.findall('\(0008,0005\).*?\[(.*?)\]', i) |
|
dbcbffb889da
test_findscu_encoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
89
diff
changeset
|
3166 self.assertEqual(1, len(characterSet)) |
|
dbcbffb889da
test_findscu_encoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
89
diff
changeset
|
3167 self.assertEqual(ENCODINGS[name][0], characterSet[0].strip()) |
|
dbcbffb889da
test_findscu_encoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
89
diff
changeset
|
3168 |
|
dbcbffb889da
test_findscu_encoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
89
diff
changeset
|
3169 patientName = re.findall('\(0010,0010\).*?\[(.*?)\]', i) |
|
dbcbffb889da
test_findscu_encoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
89
diff
changeset
|
3170 self.assertEqual(1, len(patientName)) |
|
dbcbffb889da
test_findscu_encoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
89
diff
changeset
|
3171 |
|
dbcbffb889da
test_findscu_encoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
89
diff
changeset
|
3172 expected = TEST.encode(ENCODINGS[name][1], 'ignore') |
|
dbcbffb889da
test_findscu_encoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
89
diff
changeset
|
3173 self.assertEqual(expected, patientName[0].strip()) |
|
dbcbffb889da
test_findscu_encoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
89
diff
changeset
|
3174 |
|
dbcbffb889da
test_findscu_encoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
89
diff
changeset
|
3175 |
|
dbcbffb889da
test_findscu_encoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
89
diff
changeset
|
3176 #for master in ENCODINGS: |
|
dbcbffb889da
test_findscu_encoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
89
diff
changeset
|
3177 for master in [ 'Latin1', 'Utf8', 'Cyrillic' ]: # Shortcut to speedup tests |
|
dbcbffb889da
test_findscu_encoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
89
diff
changeset
|
3178 self.assertEqual(master, DoPut(_REMOTE, '/tools/default-encoding', master)) |
|
dbcbffb889da
test_findscu_encoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
89
diff
changeset
|
3179 self.assertEqual(master, DoGet(_REMOTE, '/tools/default-encoding')) |
|
dbcbffb889da
test_findscu_encoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
89
diff
changeset
|
3180 |
|
dbcbffb889da
test_findscu_encoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
89
diff
changeset
|
3181 for name in ENCODINGS: |
|
dbcbffb889da
test_findscu_encoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
89
diff
changeset
|
3182 DropOrthanc(_REMOTE) |
|
dbcbffb889da
test_findscu_encoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
89
diff
changeset
|
3183 UploadInstance(_REMOTE, 'Encodings/Lena-%s.dcm' % ENCODINGS[name][1]) |
|
dbcbffb889da
test_findscu_encoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
89
diff
changeset
|
3184 |
|
dbcbffb889da
test_findscu_encoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
89
diff
changeset
|
3185 i = CallFindScu([ '-k', '0008,0052=STUDY', |
|
dbcbffb889da
test_findscu_encoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
89
diff
changeset
|
3186 '-k', 'PatientID', |
|
dbcbffb889da
test_findscu_encoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
89
diff
changeset
|
3187 '-k', 'SpecificCharacterSet', |
|
dbcbffb889da
test_findscu_encoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
89
diff
changeset
|
3188 '-k', 'PatientName' ]) |
|
dbcbffb889da
test_findscu_encoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
89
diff
changeset
|
3189 i = i.decode(ENCODINGS[master][1]) |
|
dbcbffb889da
test_findscu_encoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
89
diff
changeset
|
3190 |
|
dbcbffb889da
test_findscu_encoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
89
diff
changeset
|
3191 characterSet = re.findall('\(0008,0005\).*?\[(.*?)\]', i) |
|
dbcbffb889da
test_findscu_encoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
89
diff
changeset
|
3192 self.assertEqual(1, len(characterSet)) |
|
dbcbffb889da
test_findscu_encoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
89
diff
changeset
|
3193 self.assertEqual(ENCODINGS[master][0], characterSet[0].strip()) |
|
dbcbffb889da
test_findscu_encoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
89
diff
changeset
|
3194 |
|
dbcbffb889da
test_findscu_encoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
89
diff
changeset
|
3195 patientId = re.findall('\(0010,0020\).*?\[(.*?)\]', i) |
|
dbcbffb889da
test_findscu_encoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
89
diff
changeset
|
3196 self.assertEqual(1, len(patientId)) |
|
dbcbffb889da
test_findscu_encoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
89
diff
changeset
|
3197 self.assertEqual(ENCODINGS[name][1], patientId[0].strip()) |
|
dbcbffb889da
test_findscu_encoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
89
diff
changeset
|
3198 |
|
dbcbffb889da
test_findscu_encoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
89
diff
changeset
|
3199 patientName = re.findall('\(0010,0010\).*?\[(.*?)\]', i) |
|
dbcbffb889da
test_findscu_encoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
89
diff
changeset
|
3200 self.assertEqual(1, len(patientName)) |
|
dbcbffb889da
test_findscu_encoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
89
diff
changeset
|
3201 |
|
dbcbffb889da
test_findscu_encoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
89
diff
changeset
|
3202 tmp = ENCODINGS[name][1] |
|
dbcbffb889da
test_findscu_encoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
89
diff
changeset
|
3203 expected = TEST.encode(tmp, 'ignore').decode(tmp) |
|
dbcbffb889da
test_findscu_encoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
89
diff
changeset
|
3204 tmp = ENCODINGS[master][1] |
|
dbcbffb889da
test_findscu_encoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
89
diff
changeset
|
3205 expected = expected.encode(tmp, 'ignore').decode(tmp) |
|
dbcbffb889da
test_findscu_encoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
89
diff
changeset
|
3206 |
|
dbcbffb889da
test_findscu_encoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
89
diff
changeset
|
3207 self.assertEqual(expected, patientName[0].strip()) |
|
dbcbffb889da
test_findscu_encoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
89
diff
changeset
|
3208 |
|
dbcbffb889da
test_findscu_encoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
89
diff
changeset
|
3209 |
|
dbcbffb889da
test_findscu_encoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
89
diff
changeset
|
3210 a = DoPost(_REMOTE, '/tools/find', { 'Expand' : True, |
|
dbcbffb889da
test_findscu_encoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
89
diff
changeset
|
3211 'Level' : 'Study', |
|
dbcbffb889da
test_findscu_encoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
89
diff
changeset
|
3212 'Query' : { }}) |
|
dbcbffb889da
test_findscu_encoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
89
diff
changeset
|
3213 self.assertEqual(1, len(a)) |
|
dbcbffb889da
test_findscu_encoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
89
diff
changeset
|
3214 |
|
dbcbffb889da
test_findscu_encoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
89
diff
changeset
|
3215 tmp = ENCODINGS[name][1] |
|
dbcbffb889da
test_findscu_encoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
89
diff
changeset
|
3216 self.assertEqual(TEST.encode(tmp, 'ignore').decode(tmp), a[0]["PatientMainDicomTags"]["PatientName"]) |
|
96
272d1229cb49
test reconstruction of tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
95
diff
changeset
|
3217 |
|
272d1229cb49
test reconstruction of tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
95
diff
changeset
|
3218 |
|
272d1229cb49
test reconstruction of tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
95
diff
changeset
|
3219 def test_reconstruct(self): |
|
272d1229cb49
test reconstruction of tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
95
diff
changeset
|
3220 def CompareMainDicomTag(expected, instance, level, tag): |
|
272d1229cb49
test reconstruction of tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
95
diff
changeset
|
3221 self.assertEqual(expected, DoGet(_REMOTE, '/instances/%s/%s' % (instance, level))['MainDicomTags'][tag].strip()) |
|
272d1229cb49
test reconstruction of tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
95
diff
changeset
|
3222 |
|
272d1229cb49
test reconstruction of tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
95
diff
changeset
|
3223 a = UploadInstance(_REMOTE, 'DummyCT.dcm')['ID'] |
|
272d1229cb49
test reconstruction of tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
95
diff
changeset
|
3224 |
|
272d1229cb49
test reconstruction of tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
95
diff
changeset
|
3225 studies = DoGet(_REMOTE, '/studies/') |
|
272d1229cb49
test reconstruction of tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
95
diff
changeset
|
3226 self.assertEqual(1, len(DoGet(_REMOTE, '/patients/'))) |
|
272d1229cb49
test reconstruction of tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
95
diff
changeset
|
3227 self.assertEqual(1, len(studies)) |
|
272d1229cb49
test reconstruction of tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
95
diff
changeset
|
3228 self.assertEqual(1, len(DoGet(_REMOTE, '/series/'))) |
|
272d1229cb49
test reconstruction of tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
95
diff
changeset
|
3229 self.assertEqual(1, len(DoGet(_REMOTE, '/instances/'))) |
|
272d1229cb49
test reconstruction of tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
95
diff
changeset
|
3230 |
|
272d1229cb49
test reconstruction of tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
95
diff
changeset
|
3231 modified = DoPost(_REMOTE, '/studies/%s/modify' % studies[0], { |
|
272d1229cb49
test reconstruction of tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
95
diff
changeset
|
3232 "Replace" : { |
|
272d1229cb49
test reconstruction of tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
95
diff
changeset
|
3233 "StudyDescription" : "hello", |
|
272d1229cb49
test reconstruction of tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
95
diff
changeset
|
3234 "SeriesDescription" : "world", |
|
272d1229cb49
test reconstruction of tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
95
diff
changeset
|
3235 "SOPClassUID" : "test", |
|
272d1229cb49
test reconstruction of tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
95
diff
changeset
|
3236 "SOPInstanceUID" : "myid", |
|
272d1229cb49
test reconstruction of tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
95
diff
changeset
|
3237 }, |
| 119 | 3238 "Keep" : [ "StudyInstanceUID", "SeriesInstanceUID" ], |
| 3239 "Force" : True | |
|
96
272d1229cb49
test reconstruction of tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
95
diff
changeset
|
3240 }) |
|
272d1229cb49
test reconstruction of tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
95
diff
changeset
|
3241 |
|
272d1229cb49
test reconstruction of tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
95
diff
changeset
|
3242 instances = DoGet(_REMOTE, '/instances/') |
|
272d1229cb49
test reconstruction of tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
95
diff
changeset
|
3243 self.assertEqual(1, len(DoGet(_REMOTE, '/patients/'))) |
|
272d1229cb49
test reconstruction of tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
95
diff
changeset
|
3244 self.assertEqual(1, len(DoGet(_REMOTE, '/studies/'))) |
|
272d1229cb49
test reconstruction of tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
95
diff
changeset
|
3245 self.assertEqual(1, len(DoGet(_REMOTE, '/series/'))) |
|
272d1229cb49
test reconstruction of tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
95
diff
changeset
|
3246 self.assertEqual(2, len(instances)) |
|
272d1229cb49
test reconstruction of tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
95
diff
changeset
|
3247 |
|
272d1229cb49
test reconstruction of tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
95
diff
changeset
|
3248 b = instances[0] if instances[1] == a else instances[1] |
|
272d1229cb49
test reconstruction of tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
95
diff
changeset
|
3249 |
|
272d1229cb49
test reconstruction of tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
95
diff
changeset
|
3250 CompareMainDicomTag('Knee (R)', a, 'study', 'StudyDescription') |
|
272d1229cb49
test reconstruction of tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
95
diff
changeset
|
3251 CompareMainDicomTag('AX. FSE PD', a, 'series', 'SeriesDescription') |
|
272d1229cb49
test reconstruction of tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
95
diff
changeset
|
3252 CompareMainDicomTag('1.2.840.113619.2.176.2025.1499492.7040.1171286242.109', a, '', 'SOPInstanceUID') |
|
272d1229cb49
test reconstruction of tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
95
diff
changeset
|
3253 CompareMainDicomTag('myid', b, '', 'SOPInstanceUID') |
|
272d1229cb49
test reconstruction of tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
95
diff
changeset
|
3254 self.assertEqual('1.2.840.10008.5.1.4.1.1.4', DoGet(_REMOTE, '/instances/%s/metadata/SopClassUid' % a).strip()) |
|
272d1229cb49
test reconstruction of tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
95
diff
changeset
|
3255 self.assertEqual('test', DoGet(_REMOTE, '/instances/%s/metadata/SopClassUid' % b).strip()) |
|
272d1229cb49
test reconstruction of tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
95
diff
changeset
|
3256 |
|
272d1229cb49
test reconstruction of tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
95
diff
changeset
|
3257 DoPost(_REMOTE, '/instances/%s/reconstruct' % b, {}) |
|
272d1229cb49
test reconstruction of tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
95
diff
changeset
|
3258 |
|
272d1229cb49
test reconstruction of tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
95
diff
changeset
|
3259 CompareMainDicomTag('hello', a, 'study', 'StudyDescription') |
|
272d1229cb49
test reconstruction of tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
95
diff
changeset
|
3260 CompareMainDicomTag('world', a, 'series', 'SeriesDescription') |
|
272d1229cb49
test reconstruction of tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
95
diff
changeset
|
3261 CompareMainDicomTag('1.2.840.113619.2.176.2025.1499492.7040.1171286242.109', a, '', 'SOPInstanceUID') |
| 102 | 3262 |
| 104 | 3263 def test_httpClient_lua(self): |
| 3264 with open(GetDatabasePath('Lua/HttpClient.lua'), 'r') as f: | |
| 102 | 3265 result = DoPost(_REMOTE, '/tools/execute-script', f.read(), 'application/lua') |
| 3266 | |
| 3267 self.assertIn('OK', result) | |
|
107
fddb35f7289d
test_bitbucket_issue_44
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
104
diff
changeset
|
3268 |
|
fddb35f7289d
test_bitbucket_issue_44
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
104
diff
changeset
|
3269 |
|
fddb35f7289d
test_bitbucket_issue_44
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
104
diff
changeset
|
3270 def test_bitbucket_issue_44(self): |
|
fddb35f7289d
test_bitbucket_issue_44
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
104
diff
changeset
|
3271 # https://bitbucket.org/sjodogne/orthanc/issues/44/bad-interpretation-of-photometric |
|
fddb35f7289d
test_bitbucket_issue_44
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
104
diff
changeset
|
3272 UploadInstance(_REMOTE, 'Issue44/Monochrome1.dcm') |
|
fddb35f7289d
test_bitbucket_issue_44
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
104
diff
changeset
|
3273 UploadInstance(_REMOTE, 'Issue44/Monochrome2.dcm') |
|
fddb35f7289d
test_bitbucket_issue_44
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
104
diff
changeset
|
3274 |
|
fddb35f7289d
test_bitbucket_issue_44
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
104
diff
changeset
|
3275 # dcmcjpeg +ua +eb Monochrome1.dcm Monochrome1-Jpeg.dcm |
|
fddb35f7289d
test_bitbucket_issue_44
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
104
diff
changeset
|
3276 UploadInstance(_REMOTE, 'Issue44/Monochrome1-Jpeg.dcm') |
|
fddb35f7289d
test_bitbucket_issue_44
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
104
diff
changeset
|
3277 |
|
fddb35f7289d
test_bitbucket_issue_44
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
104
diff
changeset
|
3278 # dcmcjpeg +ua Monochrome1.dcm Monochrome1-JpegLS.dcm |
|
fddb35f7289d
test_bitbucket_issue_44
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
104
diff
changeset
|
3279 UploadInstance(_REMOTE, 'Issue44/Monochrome1-JpegLS.dcm') |
|
fddb35f7289d
test_bitbucket_issue_44
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
104
diff
changeset
|
3280 |
|
fddb35f7289d
test_bitbucket_issue_44
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
104
diff
changeset
|
3281 monochrome1 = 'bcdd600a-a6a9c522-5f0a6e84-8657c9f3-b76e59b7' |
|
fddb35f7289d
test_bitbucket_issue_44
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
104
diff
changeset
|
3282 monochrome1_jpeg = '9df82121-208a2da8-0038674a-3d7a773b-b7008cd2' |
|
fddb35f7289d
test_bitbucket_issue_44
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
104
diff
changeset
|
3283 monochrome1_jpegls = '0486d1a2-9165573f-b1976b20-e927b016-6b8d67ab' |
|
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test_bitbucket_issue_44
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
104
diff
changeset
|
3284 monochrome2 = 'f00947b7-f61f7164-c93414d1-c6fbda6a-9e92ed20' |
|
fddb35f7289d
test_bitbucket_issue_44
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
104
diff
changeset
|
3285 |
|
fddb35f7289d
test_bitbucket_issue_44
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
104
diff
changeset
|
3286 for i in [ monochrome1, monochrome1_jpeg, monochrome1_jpegls ]: |
|
fddb35f7289d
test_bitbucket_issue_44
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
104
diff
changeset
|
3287 im = GetImage(_REMOTE, '/instances/%s/preview' % i) |
|
fddb35f7289d
test_bitbucket_issue_44
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
104
diff
changeset
|
3288 self.assertEqual("L", im.mode) |
|
fddb35f7289d
test_bitbucket_issue_44
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
104
diff
changeset
|
3289 self.assertEqual(2010, im.size[0]) |
|
fddb35f7289d
test_bitbucket_issue_44
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
104
diff
changeset
|
3290 self.assertEqual(2446, im.size[1]) |
|
fddb35f7289d
test_bitbucket_issue_44
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
104
diff
changeset
|
3291 |
|
fddb35f7289d
test_bitbucket_issue_44
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
104
diff
changeset
|
3292 # This is the chest image, with MONOCHROME1. Raw background is |
|
fddb35f7289d
test_bitbucket_issue_44
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parents:
104
diff
changeset
|
3293 # white (255), should be rendered as black (0) => invert |
|
fddb35f7289d
test_bitbucket_issue_44
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
104
diff
changeset
|
3294 if i == monochrome1_jpeg: |
|
fddb35f7289d
test_bitbucket_issue_44
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
104
diff
changeset
|
3295 # Add some tolerance because of JPEG destructive compression |
|
fddb35f7289d
test_bitbucket_issue_44
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
104
diff
changeset
|
3296 self.assertGreater(10, im.getpixel((0,0))) |
|
fddb35f7289d
test_bitbucket_issue_44
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
104
diff
changeset
|
3297 else: |
|
fddb35f7289d
test_bitbucket_issue_44
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
104
diff
changeset
|
3298 self.assertEqual(0, im.getpixel((0,0))) |
|
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test_bitbucket_issue_44
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
104
diff
changeset
|
3299 |
|
fddb35f7289d
test_bitbucket_issue_44
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
104
diff
changeset
|
3300 im = GetImage(_REMOTE, '/instances/%s/preview' % monochrome2) |
|
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test_bitbucket_issue_44
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parents:
104
diff
changeset
|
3301 self.assertEqual("L", im.mode) |
|
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test_bitbucket_issue_44
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
104
diff
changeset
|
3302 self.assertEqual(1572, im.size[0]) |
|
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test_bitbucket_issue_44
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
104
diff
changeset
|
3303 self.assertEqual(2010, im.size[1]) |
|
fddb35f7289d
test_bitbucket_issue_44
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
104
diff
changeset
|
3304 |
|
fddb35f7289d
test_bitbucket_issue_44
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
104
diff
changeset
|
3305 # This is the key image, with MONOCHROME2. Raw background is |
|
fddb35f7289d
test_bitbucket_issue_44
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
104
diff
changeset
|
3306 # white (255), should be rendered as white (255) |
|
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test_bitbucket_issue_44
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
104
diff
changeset
|
3307 self.assertEqual(255, im.getpixel((0,0))) |
|
111
7005cdeeb704
test_bitbucket_issue_42
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
107
diff
changeset
|
3308 |
|
7005cdeeb704
test_bitbucket_issue_42
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
107
diff
changeset
|
3309 |
|
7005cdeeb704
test_bitbucket_issue_42
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
107
diff
changeset
|
3310 def test_bitbucket_issue_42(self): |
|
7005cdeeb704
test_bitbucket_issue_42
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parents:
107
diff
changeset
|
3311 # https://bitbucket.org/sjodogne/orthanc/issues/42/fails-to-modify-a-dicom-video-file |
| 123 | 3312 # This test fails on DCMTK 3.6.0, but succeeds in DCMTK 3.6.1 snapshots and DCMTK 3.6.2 |
|
111
7005cdeeb704
test_bitbucket_issue_42
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
107
diff
changeset
|
3313 UploadInstance(_REMOTE, 'Issue42.dcm')['ID'] |
|
7005cdeeb704
test_bitbucket_issue_42
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
107
diff
changeset
|
3314 modified = DoPost(_REMOTE, |
|
7005cdeeb704
test_bitbucket_issue_42
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
107
diff
changeset
|
3315 '/patients/da128605-e040d0c4-310615d2-3475da63-df2d1ef4/modify', |
| 119 | 3316 '{"Replace":{"PatientID":"Hello","PatientName":"Sample patient name"},"Force":true}', |
|
111
7005cdeeb704
test_bitbucket_issue_42
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
107
diff
changeset
|
3317 'application/json') |
|
7005cdeeb704
test_bitbucket_issue_42
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
107
diff
changeset
|
3318 self.assertTrue('PatientID' in modified) |
|
113
3e5934363e76
test_rest_find_limitµ
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
112
diff
changeset
|
3319 |
|
3e5934363e76
test_rest_find_limitµ
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
112
diff
changeset
|
3320 |
|
3e5934363e76
test_rest_find_limitµ
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
112
diff
changeset
|
3321 def test_rest_find_limit(self): |
|
3e5934363e76
test_rest_find_limitµ
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parents:
112
diff
changeset
|
3322 # Check the "Since" and "Limit" parameters in URI "/tools/find" |
|
3e5934363e76
test_rest_find_limitµ
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
112
diff
changeset
|
3323 # Related to issue 53: https://bitbucket.org/sjodogne/orthanc/issues/53 |
|
111
7005cdeeb704
test_bitbucket_issue_42
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parents:
107
diff
changeset
|
3324 |
|
113
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parents:
112
diff
changeset
|
3325 # Upload 6 instances |
|
3e5934363e76
test_rest_find_limitµ
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
112
diff
changeset
|
3326 brainix = [] |
|
3e5934363e76
test_rest_find_limitµ
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parents:
112
diff
changeset
|
3327 knee = [] |
|
3e5934363e76
test_rest_find_limitµ
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parents:
112
diff
changeset
|
3328 for i in range(2): |
|
3e5934363e76
test_rest_find_limitµ
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
112
diff
changeset
|
3329 brainix.append(UploadInstance(_REMOTE, 'Brainix/Flair/IM-0001-000%d.dcm' % (i + 1)) ['ID']) |
|
3e5934363e76
test_rest_find_limitµ
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
112
diff
changeset
|
3330 brainix.append(UploadInstance(_REMOTE, 'Brainix/Epi/IM-0001-000%d.dcm' % (i + 1)) ['ID']) |
|
3e5934363e76
test_rest_find_limitµ
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
112
diff
changeset
|
3331 knee.append(UploadInstance(_REMOTE, 'Knee/T1/IM-0001-000%d.dcm' % (i + 1)) ['ID']) |
|
3e5934363e76
test_rest_find_limitµ
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
112
diff
changeset
|
3332 |
|
3e5934363e76
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parents:
112
diff
changeset
|
3333 # Check using BRAINIX |
|
3e5934363e76
test_rest_find_limitµ
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
112
diff
changeset
|
3334 a = DoPost(_REMOTE, '/tools/find', { 'Level' : 'Instance', |
|
3e5934363e76
test_rest_find_limitµ
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parents:
112
diff
changeset
|
3335 'Query' : { 'PatientName' : 'B*' }, |
|
3e5934363e76
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parents:
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diff
changeset
|
3336 'Limit' : 10 }) |
|
3e5934363e76
test_rest_find_limitµ
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parents:
112
diff
changeset
|
3337 self.assertEqual(4, len(a)) |
|
3e5934363e76
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parents:
112
diff
changeset
|
3338 |
|
3e5934363e76
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parents:
112
diff
changeset
|
3339 a = DoPost(_REMOTE, '/tools/find', { 'Level' : 'Instance', |
|
3e5934363e76
test_rest_find_limitµ
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diff
changeset
|
3340 'Query' : { 'PatientName' : 'B*' }, |
|
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diff
changeset
|
3341 'Limit' : 4 }) |
|
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diff
changeset
|
3342 self.assertEqual(4, len(a)) |
|
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diff
changeset
|
3343 |
|
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diff
changeset
|
3344 a = DoPost(_REMOTE, '/tools/find', { 'Level' : 'Instance', |
|
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diff
changeset
|
3345 'Query' : { 'PatientName' : 'B*' }, |
|
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changeset
|
3346 'Since' : 2, |
|
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diff
changeset
|
3347 'Limit' : 4 }) |
|
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diff
changeset
|
3348 self.assertEqual(2, len(a)) |
|
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diff
changeset
|
3349 |
|
3e5934363e76
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diff
changeset
|
3350 a = DoPost(_REMOTE, '/tools/find', { 'Level' : 'Instance', |
|
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changeset
|
3351 'Query' : { 'PatientName' : 'B*' }, |
|
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changeset
|
3352 'Limit' : 3 }) |
|
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changeset
|
3353 self.assertEqual(3, len(a)) |
|
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diff
changeset
|
3354 |
|
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diff
changeset
|
3355 b = [] |
|
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diff
changeset
|
3356 for i in range(4): |
|
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diff
changeset
|
3357 a = DoPost(_REMOTE, '/tools/find', { 'Level' : 'Instance', |
|
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changeset
|
3358 'Query' : { 'PatientName' : 'B*' }, |
|
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changeset
|
3359 'Limit' : 1, |
|
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changeset
|
3360 'Since' : i }) |
|
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diff
changeset
|
3361 self.assertEqual(1, len(a)) |
|
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diff
changeset
|
3362 b.append(a[0]) |
|
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diff
changeset
|
3363 |
|
3e5934363e76
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diff
changeset
|
3364 # Check whether the two sets are equal through symmetric difference |
|
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diff
changeset
|
3365 self.assertEqual(0, len(set(b) ^ set(brainix))) |
|
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changeset
|
3366 |
|
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diff
changeset
|
3367 # Check using KNEE |
|
3e5934363e76
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diff
changeset
|
3368 a = DoPost(_REMOTE, '/tools/find', { 'Level' : 'Instance', |
|
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diff
changeset
|
3369 'Query' : { 'PatientName' : 'K*' }, |
|
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diff
changeset
|
3370 'Limit' : 10 }) |
|
3e5934363e76
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112
diff
changeset
|
3371 self.assertEqual(2, len(a)) |
|
3e5934363e76
test_rest_find_limitµ
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parents:
112
diff
changeset
|
3372 |
|
3e5934363e76
test_rest_find_limitµ
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parents:
112
diff
changeset
|
3373 a = DoPost(_REMOTE, '/tools/find', { 'Level' : 'Instance', |
|
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test_rest_find_limitµ
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diff
changeset
|
3374 'Query' : { 'PatientName' : 'K*' }, |
|
3e5934363e76
test_rest_find_limitµ
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parents:
112
diff
changeset
|
3375 'Limit' : 2 }) |
|
3e5934363e76
test_rest_find_limitµ
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diff
changeset
|
3376 self.assertEqual(2, len(a)) |
|
3e5934363e76
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parents:
112
diff
changeset
|
3377 |
|
3e5934363e76
test_rest_find_limitµ
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112
diff
changeset
|
3378 b = [] |
|
3e5934363e76
test_rest_find_limitµ
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112
diff
changeset
|
3379 for i in range(2): |
|
3e5934363e76
test_rest_find_limitµ
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parents:
112
diff
changeset
|
3380 a = DoPost(_REMOTE, '/tools/find', { 'Level' : 'Instance', |
|
3e5934363e76
test_rest_find_limitµ
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parents:
112
diff
changeset
|
3381 'Query' : { 'PatientName' : 'K*' }, |
|
3e5934363e76
test_rest_find_limitµ
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
112
diff
changeset
|
3382 'Limit' : 1, |
|
3e5934363e76
test_rest_find_limitµ
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
112
diff
changeset
|
3383 'Since' : i }) |
|
3e5934363e76
test_rest_find_limitµ
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parents:
112
diff
changeset
|
3384 self.assertEqual(1, len(a)) |
|
3e5934363e76
test_rest_find_limitµ
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parents:
112
diff
changeset
|
3385 b.append(a[0]) |
|
3e5934363e76
test_rest_find_limitµ
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
112
diff
changeset
|
3386 |
|
3e5934363e76
test_rest_find_limitµ
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
112
diff
changeset
|
3387 self.assertEqual(0, len(set(b) ^ set(knee))) |
|
115
45ebfab035b7
test_bitbucket_issue_46
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
113
diff
changeset
|
3388 |
|
45ebfab035b7
test_bitbucket_issue_46
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
113
diff
changeset
|
3389 |
|
45ebfab035b7
test_bitbucket_issue_46
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parents:
113
diff
changeset
|
3390 def test_bitbucket_issue_46(self): |
|
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parents:
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|
3391 # "PHI remaining after anonymization" |
|
45ebfab035b7
test_bitbucket_issue_46
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parents:
113
diff
changeset
|
3392 # https://bitbucket.org/sjodogne/orthanc/issues/46 |
|
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parents:
113
diff
changeset
|
3393 |
|
45ebfab035b7
test_bitbucket_issue_46
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parents:
113
diff
changeset
|
3394 def GetAnonymizedTags(study, version): |
|
45ebfab035b7
test_bitbucket_issue_46
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parents:
113
diff
changeset
|
3395 anonymized = DoPost(_REMOTE, '/studies/%s/anonymize' % study, |
|
45ebfab035b7
test_bitbucket_issue_46
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parents:
113
diff
changeset
|
3396 { 'DicomVersion' : version }, |
|
45ebfab035b7
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parents:
113
diff
changeset
|
3397 'application/json') ['ID'] |
|
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test_bitbucket_issue_46
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parents:
113
diff
changeset
|
3398 a = DoGet(_REMOTE, '/studies/%s/instances' % anonymized) |
|
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test_bitbucket_issue_46
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diff
changeset
|
3399 self.assertEqual(1, len(a)) |
|
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parents:
113
diff
changeset
|
3400 |
|
45ebfab035b7
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parents:
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diff
changeset
|
3401 instance = a[0]['ID'] |
|
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test_bitbucket_issue_46
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parents:
113
diff
changeset
|
3402 |
|
45ebfab035b7
test_bitbucket_issue_46
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113
diff
changeset
|
3403 return (instance, DoGet(_REMOTE, '/instances/%s/tags' % instance)) |
|
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test_bitbucket_issue_46
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113
diff
changeset
|
3404 |
|
45ebfab035b7
test_bitbucket_issue_46
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parents:
113
diff
changeset
|
3405 UploadInstance(_REMOTE, 'Issue44/Monochrome1.dcm') |
|
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test_bitbucket_issue_46
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parents:
113
diff
changeset
|
3406 origStudy = '6068a14b-d4df27af-9ec22145-538772d8-74f228ff' |
|
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test_bitbucket_issue_46
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
113
diff
changeset
|
3407 |
|
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parents:
113
diff
changeset
|
3408 # Add the 0032,1033 (Requesting Service) and the 0010,1060 |
|
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test_bitbucket_issue_46
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113
diff
changeset
|
3409 # (Patient's Mother's Birth Name) tags |
|
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test_bitbucket_issue_46
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parents:
113
diff
changeset
|
3410 newStudy = DoPost(_REMOTE, '/studies/%s/modify' % origStudy, |
|
45ebfab035b7
test_bitbucket_issue_46
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parents:
113
diff
changeset
|
3411 '{"Replace":{"0010,1060":"OSIMIS","0032,1033":"MOTHER"}}', |
|
45ebfab035b7
test_bitbucket_issue_46
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parents:
113
diff
changeset
|
3412 'application/json')['ID'] |
|
45ebfab035b7
test_bitbucket_issue_46
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parents:
113
diff
changeset
|
3413 |
|
45ebfab035b7
test_bitbucket_issue_46
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parents:
113
diff
changeset
|
3414 # Use Table E.1-1 from PS 3.15-2008 |
|
45ebfab035b7
test_bitbucket_issue_46
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parents:
113
diff
changeset
|
3415 # https://raw.githubusercontent.com/jodogne/dicom-specification/master/2008/08_15pu.pdf |
|
45ebfab035b7
test_bitbucket_issue_46
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parents:
113
diff
changeset
|
3416 (instance, tags) = GetAnonymizedTags(newStudy, "2008") |
|
45ebfab035b7
test_bitbucket_issue_46
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parents:
113
diff
changeset
|
3417 self.assertTrue('0032,1033' in tags) |
|
45ebfab035b7
test_bitbucket_issue_46
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parents:
113
diff
changeset
|
3418 self.assertTrue('0010,1060' in tags) |
|
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test_bitbucket_issue_46
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parents:
113
diff
changeset
|
3419 |
|
45ebfab035b7
test_bitbucket_issue_46
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parents:
113
diff
changeset
|
3420 # Use Table E.1-1 from PS 3.15-2011 (only if Orthanc >= 1.2.1) |
|
45ebfab035b7
test_bitbucket_issue_46
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parents:
113
diff
changeset
|
3421 # https://raw.githubusercontent.com/jodogne/dicom-specification/master/2008/08_15pu.pdf |
|
45ebfab035b7
test_bitbucket_issue_46
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parents:
113
diff
changeset
|
3422 (instance, tags) = GetAnonymizedTags(newStudy, "2017c") |
|
45ebfab035b7
test_bitbucket_issue_46
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parents:
113
diff
changeset
|
3423 self.assertFalse('0032,1033' in tags) |
|
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test_bitbucket_issue_46
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parents:
113
diff
changeset
|
3424 self.assertFalse('0010,1060' in tags) |
|
45ebfab035b7
test_bitbucket_issue_46
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
113
diff
changeset
|
3425 |
|
45ebfab035b7
test_bitbucket_issue_46
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
113
diff
changeset
|
3426 t = {} |
|
45ebfab035b7
test_bitbucket_issue_46
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parents:
113
diff
changeset
|
3427 for (key, value) in tags.iteritems(): |
|
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test_bitbucket_issue_46
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parents:
113
diff
changeset
|
3428 t[value['Name']] = value['Value'] |
|
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test_bitbucket_issue_46
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parents:
113
diff
changeset
|
3429 |
|
45ebfab035b7
test_bitbucket_issue_46
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parents:
113
diff
changeset
|
3430 self.assertEqual('', t['StudyDate']) # Type 1 tag => cleared |
|
45ebfab035b7
test_bitbucket_issue_46
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parents:
113
diff
changeset
|
3431 self.assertEqual('', t['StudyTime']) # Type 1 tag => cleared |
|
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test_bitbucket_issue_46
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parents:
113
diff
changeset
|
3432 self.assertEqual('', t['PatientSex']) # Type 1 tag => cleared |
|
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test_bitbucket_issue_46
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parents:
113
diff
changeset
|
3433 self.assertFalse('SeriesDate' in t) # Type 3 tag => null |
|
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test_bitbucket_issue_46
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parents:
113
diff
changeset
|
3434 self.assertFalse('SeriesTime' in t) # Type 3 tag => null |
|
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test_bitbucket_issue_46
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
113
diff
changeset
|
3435 |
|
45ebfab035b7
test_bitbucket_issue_46
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
113
diff
changeset
|
3436 with tempfile.NamedTemporaryFile(delete = True) as f: |
|
45ebfab035b7
test_bitbucket_issue_46
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parents:
113
diff
changeset
|
3437 # Run "dciodvfy" on the anonymized file to be sure it is still valid |
|
45ebfab035b7
test_bitbucket_issue_46
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parents:
113
diff
changeset
|
3438 f.write(DoGet(_REMOTE, '/instances/%s/file' % instance)) |
|
45ebfab035b7
test_bitbucket_issue_46
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
113
diff
changeset
|
3439 f.flush() |
|
45ebfab035b7
test_bitbucket_issue_46
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parents:
113
diff
changeset
|
3440 subprocess.check_output([ FindExecutable('dciodvfy'), f.name ], |
|
45ebfab035b7
test_bitbucket_issue_46
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
113
diff
changeset
|
3441 stderr = subprocess.STDOUT).split('\n') |
|
118
a954c535fef6
test_bitbucket_issue_55
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
117
diff
changeset
|
3442 |
|
a954c535fef6
test_bitbucket_issue_55
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parents:
117
diff
changeset
|
3443 |
|
a954c535fef6
test_bitbucket_issue_55
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parents:
117
diff
changeset
|
3444 def test_bitbucket_issue_55(self): |
|
a954c535fef6
test_bitbucket_issue_55
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parents:
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diff
changeset
|
3445 def Run(modify, query): |
|
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diff
changeset
|
3446 self.assertEqual(1, len(DoGet(_REMOTE, '/instances'))) |
|
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test_bitbucket_issue_55
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diff
changeset
|
3447 |
|
a954c535fef6
test_bitbucket_issue_55
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diff
changeset
|
3448 operation = 'modify' if modify else 'anonymize' |
|
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test_bitbucket_issue_55
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diff
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|
3449 |
|
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test_bitbucket_issue_55
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diff
changeset
|
3450 self.assertRaises(Exception, lambda: DoPost( |
|
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test_bitbucket_issue_55
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diff
changeset
|
3451 _REMOTE, '/studies/%s/%s' % (study, operation), query)) |
|
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diff
changeset
|
3452 self.assertEqual(1, len(DoGet(_REMOTE, '/instances'))) |
|
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test_bitbucket_issue_55
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diff
changeset
|
3453 |
|
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diff
changeset
|
3454 query["Force"] = True |
|
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diff
changeset
|
3455 a = DoPost(_REMOTE, '/studies/%s/%s' % (study, operation), query)['Path'] |
|
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changeset
|
3456 self.assertEqual(2, len(DoGet(_REMOTE, '/instances'))) |
|
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changeset
|
3457 DoDelete(_REMOTE, a) |
|
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diff
changeset
|
3458 |
|
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diff
changeset
|
3459 self.assertEqual(1, len(DoGet(_REMOTE, '/instances'))) |
|
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diff
changeset
|
3460 |
|
a954c535fef6
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diff
changeset
|
3461 UploadInstance(_REMOTE, 'DummyCT.dcm') |
|
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diff
changeset
|
3462 study = 'b9c08539-26f93bde-c81ab0d7-bffaf2cb-a4d0bdd0' |
|
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changeset
|
3463 |
|
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diff
changeset
|
3464 Run(True, { "Replace" : { "StudyInstanceUID" : "world" } }) |
|
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changeset
|
3465 Run(True, { "Replace" : { "SeriesInstanceUID" : "world" } }) |
|
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changeset
|
3466 Run(True, { "Replace" : { "SOPInstanceUID" : "world" } }) |
|
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|
3467 |
|
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diff
changeset
|
3468 Run(False, { "Keep" : [ "StudyInstanceUID" ]}) |
|
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changeset
|
3469 Run(False, { "Keep" : [ "SeriesInstanceUID" ]}) |
|
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diff
changeset
|
3470 Run(False, { "Keep" : [ "SOPInstanceUID" ]}) |
|
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changeset
|
3471 |
|
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diff
changeset
|
3472 Run(False, { "Replace" : { "StudyInstanceUID" : "world" } }) |
|
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diff
changeset
|
3473 Run(False, { "Replace" : { "SeriesInstanceUID" : "world" } }) |
|
a954c535fef6
test_bitbucket_issue_55
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
117
diff
changeset
|
3474 Run(False, { "Replace" : { "SOPInstanceUID" : "world" } }) |
|
a954c535fef6
test_bitbucket_issue_55
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
117
diff
changeset
|
3475 |
|
120
fce08afe6b2d
test_bitbucket_issue_56
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
119
diff
changeset
|
3476 |
|
fce08afe6b2d
test_bitbucket_issue_56
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
119
diff
changeset
|
3477 def test_bitbucket_issue_56(self): |
|
fce08afe6b2d
test_bitbucket_issue_56
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
119
diff
changeset
|
3478 # Case-insensitive matching over accents. This test assumes |
|
fce08afe6b2d
test_bitbucket_issue_56
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
119
diff
changeset
|
3479 # that the "CaseSensitivePN" configuration option of Orthanc |
|
fce08afe6b2d
test_bitbucket_issue_56
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
119
diff
changeset
|
3480 # is set to "false" (default value). |
|
fce08afe6b2d
test_bitbucket_issue_56
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
119
diff
changeset
|
3481 # https://bitbucket.org/sjodogne/orthanc/issues/56 |
|
fce08afe6b2d
test_bitbucket_issue_56
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
119
diff
changeset
|
3482 |
|
fce08afe6b2d
test_bitbucket_issue_56
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
119
diff
changeset
|
3483 def Check(name, expected, expectedSensitive): |
|
fce08afe6b2d
test_bitbucket_issue_56
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
119
diff
changeset
|
3484 a = CallFindScu([ '-k', '0008,0005=ISO_IR 192', # Use UTF-8 |
|
fce08afe6b2d
test_bitbucket_issue_56
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
119
diff
changeset
|
3485 '-k', '0008,0052=PATIENT', |
|
fce08afe6b2d
test_bitbucket_issue_56
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
119
diff
changeset
|
3486 '-k', 'PatientName=%s' % name ]) |
|
fce08afe6b2d
test_bitbucket_issue_56
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
119
diff
changeset
|
3487 patientNames = re.findall('\(0010,0010\).*?\[(.*?)\]', a) |
|
fce08afe6b2d
test_bitbucket_issue_56
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
119
diff
changeset
|
3488 self.assertEqual(expected, len(patientNames)) |
|
fce08afe6b2d
test_bitbucket_issue_56
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
119
diff
changeset
|
3489 |
|
fce08afe6b2d
test_bitbucket_issue_56
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
119
diff
changeset
|
3490 a = DoPost(_REMOTE, '/tools/find', { 'Level' : 'Patient', |
|
fce08afe6b2d
test_bitbucket_issue_56
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
119
diff
changeset
|
3491 'CaseSensitive' : False, |
|
fce08afe6b2d
test_bitbucket_issue_56
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
119
diff
changeset
|
3492 'Query' : { 'PatientName' : name }}) |
|
fce08afe6b2d
test_bitbucket_issue_56
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
119
diff
changeset
|
3493 self.assertEqual(expected, len(a)) |
|
fce08afe6b2d
test_bitbucket_issue_56
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
119
diff
changeset
|
3494 |
|
fce08afe6b2d
test_bitbucket_issue_56
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
119
diff
changeset
|
3495 a = DoPost(_REMOTE, '/tools/find', { 'Level' : 'Patient', |
|
fce08afe6b2d
test_bitbucket_issue_56
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
119
diff
changeset
|
3496 'CaseSensitive' : True, |
|
fce08afe6b2d
test_bitbucket_issue_56
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
119
diff
changeset
|
3497 'Query' : { 'PatientName' : name }}) |
|
fce08afe6b2d
test_bitbucket_issue_56
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
119
diff
changeset
|
3498 self.assertEqual(expectedSensitive, len(a)) |
|
fce08afe6b2d
test_bitbucket_issue_56
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
119
diff
changeset
|
3499 |
|
fce08afe6b2d
test_bitbucket_issue_56
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
119
diff
changeset
|
3500 UploadInstance(_REMOTE, 'Encodings/Lena-latin1.dcm') |
|
fce08afe6b2d
test_bitbucket_issue_56
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
119
diff
changeset
|
3501 |
|
fce08afe6b2d
test_bitbucket_issue_56
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
119
diff
changeset
|
3502 # WildcardConstraint |
|
fce08afe6b2d
test_bitbucket_issue_56
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
119
diff
changeset
|
3503 Check('TeSt*', 1, 0) |
|
fce08afe6b2d
test_bitbucket_issue_56
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
119
diff
changeset
|
3504 Check('TeSt-a*', 0, 0) |
|
fce08afe6b2d
test_bitbucket_issue_56
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
119
diff
changeset
|
3505 Check('TeSt-É*', 1, 0) |
|
fce08afe6b2d
test_bitbucket_issue_56
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
119
diff
changeset
|
3506 Check('TeSt-é*', 1, 0) |
|
fce08afe6b2d
test_bitbucket_issue_56
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
119
diff
changeset
|
3507 Check('Test-é*', 1, 1) |
|
fce08afe6b2d
test_bitbucket_issue_56
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
119
diff
changeset
|
3508 |
|
fce08afe6b2d
test_bitbucket_issue_56
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
119
diff
changeset
|
3509 # ListConstraint |
|
fce08afe6b2d
test_bitbucket_issue_56
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
119
diff
changeset
|
3510 Check('Test-éüäöò\\nope', 1, 1) |
|
fce08afe6b2d
test_bitbucket_issue_56
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
119
diff
changeset
|
3511 Check('Test-ÉÜÄÖÒ\\nope', 1, 0) |
|
fce08afe6b2d
test_bitbucket_issue_56
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
119
diff
changeset
|
3512 |
|
fce08afe6b2d
test_bitbucket_issue_56
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
119
diff
changeset
|
3513 # ValueConstraint |
|
fce08afe6b2d
test_bitbucket_issue_56
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
119
diff
changeset
|
3514 Check('Test-éüäöò', 1, 1) |
|
fce08afe6b2d
test_bitbucket_issue_56
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
119
diff
changeset
|
3515 Check('Test-ÉÜÄÖÒ', 1, 0) |
|
fce08afe6b2d
test_bitbucket_issue_56
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
119
diff
changeset
|
3516 |
| 125 | 3517 |
| 3518 def test_gbk_alias(self): | |
| 3519 # https://groups.google.com/d/msg/orthanc-users/WMM8LMbjpUc/02-1f_yFCgAJ | |
| 3520 # This test fails on Orthanc <= 1.3.0 | |
| 3521 i = UploadInstance(_REMOTE, '2017-09-19-GBK-Tumashu.dcm')['ID'] | |
| 3522 tags = DoGet(_REMOTE, '/instances/%s/tags?simplify' % i) | |
| 3523 self.assertEqual(tags['PatientName'], u'徐浩凯') | |
| 3524 self.assertEqual(tags['InstitutionName'], u'灌云县疾病预防控制中心') | |
| 126 | 3525 |
| 3526 | |
| 3527 def test_long_tag(self): | |
| 3528 i = UploadInstance(_REMOTE, 'DummyCTWithLongTag.dcm')['ID'] | |
| 3529 series = 'f2635388-f01d497a-15f7c06b-ad7dba06-c4c599fe' | |
| 3530 | |
| 3531 tags = DoGet(_REMOTE, '/instances/%s/tags' % i) | |
| 3532 self.assertTrue('0018,1020' in tags) | |
| 3533 self.assertEqual('SoftwareVersions', tags['0018,1020']['Name']) | |
| 3534 self.assertEqual('TooLong', tags['0018,1020']['Type']) | |
| 3535 self.assertEqual(None, tags['0018,1020']['Value']) | |
| 3536 | |
| 3537 tags = DoGet(_REMOTE, '/instances/%s/tags?ignore-length=0018-1020' % i) | |
| 3538 self.assertTrue('0018,1020' in tags) | |
| 3539 self.assertEqual('SoftwareVersions', tags['0018,1020']['Name']) | |
| 3540 self.assertEqual('String', tags['0018,1020']['Type']) | |
| 3541 self.assertTrue(tags['0018,1020']['Value'].startswith('Lorem ipsum dolor sit amet')) | |
| 3542 | |
| 3543 tags = DoGet(_REMOTE, '/instances/%s/tags?simplify' % i) | |
| 3544 self.assertTrue('SoftwareVersions' in tags) | |
| 3545 self.assertEqual(None, tags['SoftwareVersions']) | |
| 3546 self.assertTrue('HeartRate' in tags) | |
| 3547 self.assertEqual(474, int(tags['HeartRate'])) | |
| 3548 | |
| 3549 tags = DoGet(_REMOTE, '/instances/%s/simplified-tags' % i) | |
| 3550 self.assertTrue('SoftwareVersions' in tags) | |
| 3551 self.assertEqual(None, tags['SoftwareVersions']) | |
| 3552 | |
| 3553 tags = DoGet(_REMOTE, '/instances/%s/tags?simplify&ignore-length=0018-1020' % i) | |
| 3554 self.assertTrue('SoftwareVersions' in tags) | |
| 3555 self.assertTrue(tags['SoftwareVersions'].startswith('Lorem ipsum dolor sit amet')) | |
| 3556 | |
| 3557 tags = DoGet(_REMOTE, '/instances/%s/tags?simplify&ignore-length=SoftwareVersions' % i) | |
| 3558 self.assertTrue('SoftwareVersions' in tags) | |
| 3559 self.assertTrue(tags['SoftwareVersions'].startswith('Lorem ipsum dolor sit amet')) | |
| 3560 | |
| 3561 tags = DoGet(_REMOTE, '/series/%s/instances-tags' % series) | |
| 3562 self.assertEqual(1, len(tags)) | |
| 3563 self.assertTrue(i in tags.keys()) | |
| 3564 self.assertTrue('0018,1020' in tags[i]) | |
| 3565 self.assertEqual('TooLong', tags[i]['0018,1020']['Type']) | |
| 3566 | |
| 3567 tags = DoGet(_REMOTE, '/series/%s/instances-tags?ignore-length=SoftwareVersions' % series) | |
| 3568 self.assertEqual(1, len(tags)) | |
| 3569 self.assertTrue(i in tags.keys()) | |
| 3570 self.assertTrue('0018,1020' in tags[i]) | |
| 3571 self.assertEqual('String', tags[i]['0018,1020']['Type']) | |
| 3572 self.assertTrue(tags[i]['0018,1020']['Value'].startswith('Lorem ipsum dolor sit amet')) | |
| 3573 | |
|
127
1eea4d3a1ba9
test_extended_media
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
126
diff
changeset
|
3574 |
|
1eea4d3a1ba9
test_extended_media
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
126
diff
changeset
|
3575 def test_extended_media(self): |
|
1eea4d3a1ba9
test_extended_media
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
126
diff
changeset
|
3576 UploadInstance(_REMOTE, 'Knee/T1/IM-0001-0001.dcm') |
|
1eea4d3a1ba9
test_extended_media
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
126
diff
changeset
|
3577 |
|
1eea4d3a1ba9
test_extended_media
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
126
diff
changeset
|
3578 z = GetArchive(_REMOTE, '/patients/%s/media?extended' % DoGet(_REMOTE, '/patients')[0]) |
|
1eea4d3a1ba9
test_extended_media
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
126
diff
changeset
|
3579 self.assertEqual(2, len(z.namelist())) |
|
1eea4d3a1ba9
test_extended_media
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
126
diff
changeset
|
3580 self.assertTrue('IMAGES/IM0' in z.namelist()) |
|
1eea4d3a1ba9
test_extended_media
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
126
diff
changeset
|
3581 self.assertTrue('DICOMDIR' in z.namelist()) |
|
1eea4d3a1ba9
test_extended_media
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
126
diff
changeset
|
3582 |
|
1eea4d3a1ba9
test_extended_media
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
126
diff
changeset
|
3583 try: |
|
1eea4d3a1ba9
test_extended_media
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
126
diff
changeset
|
3584 os.remove('/tmp/DICOMDIR') |
|
1eea4d3a1ba9
test_extended_media
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
126
diff
changeset
|
3585 except: |
|
1eea4d3a1ba9
test_extended_media
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
126
diff
changeset
|
3586 # The file does not exist |
|
1eea4d3a1ba9
test_extended_media
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
126
diff
changeset
|
3587 pass |
|
1eea4d3a1ba9
test_extended_media
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
126
diff
changeset
|
3588 |
|
1eea4d3a1ba9
test_extended_media
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
126
diff
changeset
|
3589 z.extract('DICOMDIR', '/tmp') |
|
1eea4d3a1ba9
test_extended_media
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
126
diff
changeset
|
3590 a = subprocess.check_output([ FindExecutable('dciodvfy'), '/tmp/DICOMDIR' ], |
|
1eea4d3a1ba9
test_extended_media
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
126
diff
changeset
|
3591 stderr = subprocess.STDOUT).split('\n') |
|
1eea4d3a1ba9
test_extended_media
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
126
diff
changeset
|
3592 self.assertEqual(5, len(a)) |
|
1eea4d3a1ba9
test_extended_media
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
126
diff
changeset
|
3593 self.assertTrue(a[0].startswith('Warning')) |
|
1eea4d3a1ba9
test_extended_media
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
126
diff
changeset
|
3594 self.assertEqual('BasicDirectory', a[1]) |
|
1eea4d3a1ba9
test_extended_media
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
126
diff
changeset
|
3595 self.assertTrue('not present in standard DICOM IOD' in a[2]) |
|
1eea4d3a1ba9
test_extended_media
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
126
diff
changeset
|
3596 self.assertTrue('not present in standard DICOM IOD' in a[3]) |
|
1eea4d3a1ba9
test_extended_media
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
126
diff
changeset
|
3597 self.assertEqual('', a[4]) |
|
1eea4d3a1ba9
test_extended_media
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
126
diff
changeset
|
3598 |
|
1eea4d3a1ba9
test_extended_media
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
126
diff
changeset
|
3599 a = subprocess.check_output([ FindExecutable('dcentvfy'), '/tmp/DICOMDIR' ], |
|
1eea4d3a1ba9
test_extended_media
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
126
diff
changeset
|
3600 stderr = subprocess.STDOUT).split('\n') |
|
1eea4d3a1ba9
test_extended_media
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
126
diff
changeset
|
3601 self.assertEqual(1, len(a)) |
|
1eea4d3a1ba9
test_extended_media
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
126
diff
changeset
|
3602 self.assertEqual('', a[0]) |
|
1eea4d3a1ba9
test_extended_media
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
126
diff
changeset
|
3603 |
|
1eea4d3a1ba9
test_extended_media
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
126
diff
changeset
|
3604 a = subprocess.check_output([ FindExecutable('dcm2xml'), '/tmp/DICOMDIR' ]) |
|
1eea4d3a1ba9
test_extended_media
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
126
diff
changeset
|
3605 self.assertTrue(re.search('1.3.46.670589.11.17521.5.0.3124.2008081908590448738', a) != None) |
|
1eea4d3a1ba9
test_extended_media
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
126
diff
changeset
|
3606 |
|
1eea4d3a1ba9
test_extended_media
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
126
diff
changeset
|
3607 # Check the presence of the series description (extended tag) |
|
1eea4d3a1ba9
test_extended_media
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
126
diff
changeset
|
3608 self.assertTrue(re.search('T1W_aTSE', a) != None) |
|
1eea4d3a1ba9
test_extended_media
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
126
diff
changeset
|
3609 |
|
1eea4d3a1ba9
test_extended_media
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
126
diff
changeset
|
3610 os.remove('/tmp/DICOMDIR') |
|
1eea4d3a1ba9
test_extended_media
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
126
diff
changeset
|
3611 |
|
1eea4d3a1ba9
test_extended_media
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
126
diff
changeset
|
3612 |
|
132
149144d854bb
Orthanc.test_anonymize_relationships_1/2
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
130
diff
changeset
|
3613 def test_anonymize_relationships_1(self): |
|
133
f0d4c4707e64
test_anonymize_relationships_3
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
132
diff
changeset
|
3614 UploadInstance(_REMOTE, 'Knee/T1/IM-0001-0001.dcm') |
|
f0d4c4707e64
test_anonymize_relationships_3
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
132
diff
changeset
|
3615 UploadInstance(_REMOTE, 'Knee/T1/IM-0001-0002.dcm') |
|
132
149144d854bb
Orthanc.test_anonymize_relationships_1/2
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
130
diff
changeset
|
3616 study = '0a9b3153-2512774b-2d9580de-1fc3dcf6-3bd83918' |
|
149144d854bb
Orthanc.test_anonymize_relationships_1/2
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
130
diff
changeset
|
3617 |
|
149144d854bb
Orthanc.test_anonymize_relationships_1/2
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
130
diff
changeset
|
3618 anonymized = DoPost(_REMOTE, '/studies/%s/anonymize' % study, |
|
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Orthanc.test_anonymize_relationships_1/2
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
130
diff
changeset
|
3619 '{}', |
|
149144d854bb
Orthanc.test_anonymize_relationships_1/2
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
130
diff
changeset
|
3620 'application/json')['ID'] |
|
149144d854bb
Orthanc.test_anonymize_relationships_1/2
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
130
diff
changeset
|
3621 |
|
149144d854bb
Orthanc.test_anonymize_relationships_1/2
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
130
diff
changeset
|
3622 a = DoGet(_REMOTE, '/studies/%s/instances' % study) |
|
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Orthanc.test_anonymize_relationships_1/2
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parents:
130
diff
changeset
|
3623 self.assertEqual(2, len(a)) |
|
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Orthanc.test_anonymize_relationships_1/2
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
130
diff
changeset
|
3624 a1 = a[0]['ID'] |
|
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Orthanc.test_anonymize_relationships_1/2
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
130
diff
changeset
|
3625 a2 = a[1]['ID'] |
|
149144d854bb
Orthanc.test_anonymize_relationships_1/2
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
130
diff
changeset
|
3626 |
|
149144d854bb
Orthanc.test_anonymize_relationships_1/2
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
130
diff
changeset
|
3627 b = DoGet(_REMOTE, '/studies/%s/instances' % anonymized) |
|
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Orthanc.test_anonymize_relationships_1/2
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
130
diff
changeset
|
3628 self.assertEqual(2, len(b)) |
|
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Orthanc.test_anonymize_relationships_1/2
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
130
diff
changeset
|
3629 b1 = b[0]['ID'] |
|
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Orthanc.test_anonymize_relationships_1/2
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
130
diff
changeset
|
3630 b2 = b[1]['ID'] |
|
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Orthanc.test_anonymize_relationships_1/2
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
130
diff
changeset
|
3631 |
|
149144d854bb
Orthanc.test_anonymize_relationships_1/2
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
130
diff
changeset
|
3632 SEQUENCE = '/instances/%s/content/ReferencedImageSequence' |
|
149144d854bb
Orthanc.test_anonymize_relationships_1/2
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
130
diff
changeset
|
3633 SOP = '/instances/%s/content/ReferencedImageSequence/%d/ReferencedSOPInstanceUID' |
|
149144d854bb
Orthanc.test_anonymize_relationships_1/2
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
130
diff
changeset
|
3634 CLASS = '/instances/%s/content/ReferencedImageSequence/%d/ReferencedSOPClassUID' |
|
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Orthanc.test_anonymize_relationships_1/2
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
130
diff
changeset
|
3635 FRAME = '/instances/%s/content/FrameOfReferenceUID' |
|
149144d854bb
Orthanc.test_anonymize_relationships_1/2
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
130
diff
changeset
|
3636 |
|
149144d854bb
Orthanc.test_anonymize_relationships_1/2
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
130
diff
changeset
|
3637 self.assertEqual(DoGet(_REMOTE, FRAME % a1), |
|
149144d854bb
Orthanc.test_anonymize_relationships_1/2
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
130
diff
changeset
|
3638 DoGet(_REMOTE, FRAME % a2)) |
|
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Orthanc.test_anonymize_relationships_1/2
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
130
diff
changeset
|
3639 self.assertEqual(DoGet(_REMOTE, FRAME % b1), |
|
149144d854bb
Orthanc.test_anonymize_relationships_1/2
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
130
diff
changeset
|
3640 DoGet(_REMOTE, FRAME % b2)) |
|
149144d854bb
Orthanc.test_anonymize_relationships_1/2
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
130
diff
changeset
|
3641 self.assertNotEqual(DoGet(_REMOTE, FRAME % a1), |
|
149144d854bb
Orthanc.test_anonymize_relationships_1/2
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
130
diff
changeset
|
3642 DoGet(_REMOTE, FRAME % b1)) |
|
149144d854bb
Orthanc.test_anonymize_relationships_1/2
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
130
diff
changeset
|
3643 self.assertNotEqual(DoGet(_REMOTE, FRAME % a2), |
|
149144d854bb
Orthanc.test_anonymize_relationships_1/2
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
130
diff
changeset
|
3644 DoGet(_REMOTE, FRAME % b2)) |
|
149144d854bb
Orthanc.test_anonymize_relationships_1/2
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
130
diff
changeset
|
3645 |
|
149144d854bb
Orthanc.test_anonymize_relationships_1/2
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
130
diff
changeset
|
3646 self.assertEqual(3, len(DoGet(_REMOTE, SEQUENCE % a1))) |
|
149144d854bb
Orthanc.test_anonymize_relationships_1/2
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
130
diff
changeset
|
3647 self.assertEqual(3, len(DoGet(_REMOTE, SEQUENCE % a2))) |
|
149144d854bb
Orthanc.test_anonymize_relationships_1/2
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
130
diff
changeset
|
3648 self.assertEqual(3, len(DoGet(_REMOTE, SEQUENCE % b1))) |
|
149144d854bb
Orthanc.test_anonymize_relationships_1/2
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
130
diff
changeset
|
3649 self.assertEqual(3, len(DoGet(_REMOTE, SEQUENCE % b2))) |
|
149144d854bb
Orthanc.test_anonymize_relationships_1/2
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
130
diff
changeset
|
3650 |
|
149144d854bb
Orthanc.test_anonymize_relationships_1/2
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
130
diff
changeset
|
3651 for i in range(3): |
|
149144d854bb
Orthanc.test_anonymize_relationships_1/2
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
130
diff
changeset
|
3652 self.assertEqual(DoGet(_REMOTE, SOP % (a1, i)), |
|
149144d854bb
Orthanc.test_anonymize_relationships_1/2
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
130
diff
changeset
|
3653 DoGet(_REMOTE, SOP % (a2, i))) |
|
149144d854bb
Orthanc.test_anonymize_relationships_1/2
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
130
diff
changeset
|
3654 self.assertEqual(DoGet(_REMOTE, SOP % (b1, i)), |
|
149144d854bb
Orthanc.test_anonymize_relationships_1/2
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
130
diff
changeset
|
3655 DoGet(_REMOTE, SOP % (b2, i))) |
|
149144d854bb
Orthanc.test_anonymize_relationships_1/2
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
130
diff
changeset
|
3656 self.assertNotEqual(DoGet(_REMOTE, SOP % (a1, i)), |
|
149144d854bb
Orthanc.test_anonymize_relationships_1/2
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
130
diff
changeset
|
3657 DoGet(_REMOTE, SOP % (b1, i))) |
|
149144d854bb
Orthanc.test_anonymize_relationships_1/2
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
130
diff
changeset
|
3658 self.assertNotEqual(DoGet(_REMOTE, SOP % (a2, i)), |
|
149144d854bb
Orthanc.test_anonymize_relationships_1/2
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
130
diff
changeset
|
3659 DoGet(_REMOTE, SOP % (b2, i))) |
|
149144d854bb
Orthanc.test_anonymize_relationships_1/2
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
130
diff
changeset
|
3660 self.assertEqual(DoGet(_REMOTE, CLASS % (a1, i)), |
|
149144d854bb
Orthanc.test_anonymize_relationships_1/2
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
130
diff
changeset
|
3661 DoGet(_REMOTE, CLASS % (b1, i))) |
|
149144d854bb
Orthanc.test_anonymize_relationships_1/2
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
130
diff
changeset
|
3662 self.assertEqual(DoGet(_REMOTE, CLASS % (a2, i)), |
|
149144d854bb
Orthanc.test_anonymize_relationships_1/2
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
130
diff
changeset
|
3663 DoGet(_REMOTE, CLASS % (b2, i))) |
|
149144d854bb
Orthanc.test_anonymize_relationships_1/2
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
130
diff
changeset
|
3664 |
|
149144d854bb
Orthanc.test_anonymize_relationships_1/2
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
130
diff
changeset
|
3665 |
|
149144d854bb
Orthanc.test_anonymize_relationships_1/2
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
130
diff
changeset
|
3666 def test_anonymize_relationships_2(self): |
|
133
f0d4c4707e64
test_anonymize_relationships_3
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
132
diff
changeset
|
3667 UploadInstance(_REMOTE, 'Comunix/Ct/IM-0001-0001.dcm') |
|
f0d4c4707e64
test_anonymize_relationships_3
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
132
diff
changeset
|
3668 UploadInstance(_REMOTE, 'Comunix/Ct/IM-0001-0002.dcm') |
|
132
149144d854bb
Orthanc.test_anonymize_relationships_1/2
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
130
diff
changeset
|
3669 study = '6c65289b-db2fcb71-7eaf73f4-8e12470c-a4d6d7cf' |
|
149144d854bb
Orthanc.test_anonymize_relationships_1/2
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
130
diff
changeset
|
3670 |
|
149144d854bb
Orthanc.test_anonymize_relationships_1/2
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
130
diff
changeset
|
3671 anonymized = DoPost(_REMOTE, '/studies/%s/anonymize' % study, |
|
149144d854bb
Orthanc.test_anonymize_relationships_1/2
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
130
diff
changeset
|
3672 '{}', |
|
149144d854bb
Orthanc.test_anonymize_relationships_1/2
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
130
diff
changeset
|
3673 'application/json')['ID'] |
|
149144d854bb
Orthanc.test_anonymize_relationships_1/2
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
130
diff
changeset
|
3674 |
|
149144d854bb
Orthanc.test_anonymize_relationships_1/2
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
130
diff
changeset
|
3675 a = DoGet(_REMOTE, '/studies/%s/instances' % study) |
|
149144d854bb
Orthanc.test_anonymize_relationships_1/2
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
130
diff
changeset
|
3676 self.assertEqual(2, len(a)) |
|
149144d854bb
Orthanc.test_anonymize_relationships_1/2
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
130
diff
changeset
|
3677 a1 = a[0]['ID'] |
|
149144d854bb
Orthanc.test_anonymize_relationships_1/2
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
130
diff
changeset
|
3678 a2 = a[1]['ID'] |
|
149144d854bb
Orthanc.test_anonymize_relationships_1/2
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
130
diff
changeset
|
3679 |
|
149144d854bb
Orthanc.test_anonymize_relationships_1/2
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
130
diff
changeset
|
3680 b = DoGet(_REMOTE, '/studies/%s/instances' % anonymized) |
|
149144d854bb
Orthanc.test_anonymize_relationships_1/2
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
130
diff
changeset
|
3681 self.assertEqual(2, len(b)) |
|
149144d854bb
Orthanc.test_anonymize_relationships_1/2
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
130
diff
changeset
|
3682 b1 = b[0]['ID'] |
|
149144d854bb
Orthanc.test_anonymize_relationships_1/2
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
130
diff
changeset
|
3683 b2 = b[1]['ID'] |
|
149144d854bb
Orthanc.test_anonymize_relationships_1/2
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
130
diff
changeset
|
3684 |
|
149144d854bb
Orthanc.test_anonymize_relationships_1/2
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
130
diff
changeset
|
3685 SEQUENCE = '/instances/%s/content/SourceImageSequence' |
|
149144d854bb
Orthanc.test_anonymize_relationships_1/2
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
130
diff
changeset
|
3686 SOP = '/instances/%s/content/SourceImageSequence/%d/ReferencedSOPInstanceUID' |
|
149144d854bb
Orthanc.test_anonymize_relationships_1/2
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
130
diff
changeset
|
3687 CLASS = '/instances/%s/content/SourceImageSequence/%d/ReferencedSOPClassUID' |
|
149144d854bb
Orthanc.test_anonymize_relationships_1/2
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
130
diff
changeset
|
3688 |
|
149144d854bb
Orthanc.test_anonymize_relationships_1/2
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
130
diff
changeset
|
3689 self.assertEqual(1, len(DoGet(_REMOTE, SEQUENCE % a1))) |
|
149144d854bb
Orthanc.test_anonymize_relationships_1/2
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
130
diff
changeset
|
3690 self.assertEqual(1, len(DoGet(_REMOTE, SEQUENCE % a2))) |
|
149144d854bb
Orthanc.test_anonymize_relationships_1/2
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
130
diff
changeset
|
3691 self.assertEqual(1, len(DoGet(_REMOTE, SEQUENCE % b1))) |
|
149144d854bb
Orthanc.test_anonymize_relationships_1/2
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
130
diff
changeset
|
3692 self.assertEqual(1, len(DoGet(_REMOTE, SEQUENCE % b2))) |
|
149144d854bb
Orthanc.test_anonymize_relationships_1/2
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
130
diff
changeset
|
3693 self.assertEqual(DoGet(_REMOTE, SOP % (a1, 0)), |
|
149144d854bb
Orthanc.test_anonymize_relationships_1/2
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
130
diff
changeset
|
3694 DoGet(_REMOTE, SOP % (a2, 0))) |
|
149144d854bb
Orthanc.test_anonymize_relationships_1/2
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
130
diff
changeset
|
3695 self.assertEqual(DoGet(_REMOTE, SOP % (b1, 0)), |
|
149144d854bb
Orthanc.test_anonymize_relationships_1/2
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
130
diff
changeset
|
3696 DoGet(_REMOTE, SOP % (b2, 0))) |
|
149144d854bb
Orthanc.test_anonymize_relationships_1/2
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
130
diff
changeset
|
3697 self.assertNotEqual(DoGet(_REMOTE, SOP % (a1, 0)), |
|
149144d854bb
Orthanc.test_anonymize_relationships_1/2
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
130
diff
changeset
|
3698 DoGet(_REMOTE, SOP % (b1, 0))) |
|
149144d854bb
Orthanc.test_anonymize_relationships_1/2
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
130
diff
changeset
|
3699 self.assertNotEqual(DoGet(_REMOTE, SOP % (a2, 0)), |
|
149144d854bb
Orthanc.test_anonymize_relationships_1/2
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
130
diff
changeset
|
3700 DoGet(_REMOTE, SOP % (b2, 0))) |
|
149144d854bb
Orthanc.test_anonymize_relationships_1/2
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
130
diff
changeset
|
3701 self.assertEqual(DoGet(_REMOTE, CLASS % (a1, 0)), |
|
149144d854bb
Orthanc.test_anonymize_relationships_1/2
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
130
diff
changeset
|
3702 DoGet(_REMOTE, CLASS % (b1, 0))) |
|
149144d854bb
Orthanc.test_anonymize_relationships_1/2
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
130
diff
changeset
|
3703 self.assertEqual(DoGet(_REMOTE, CLASS % (a2, 0)), |
|
149144d854bb
Orthanc.test_anonymize_relationships_1/2
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
130
diff
changeset
|
3704 DoGet(_REMOTE, CLASS % (b2, 0))) |
|
133
f0d4c4707e64
test_anonymize_relationships_3
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
132
diff
changeset
|
3705 |
|
f0d4c4707e64
test_anonymize_relationships_3
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
132
diff
changeset
|
3706 |
|
f0d4c4707e64
test_anonymize_relationships_3
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
132
diff
changeset
|
3707 def test_anonymize_relationships_3(self): |
|
f0d4c4707e64
test_anonymize_relationships_3
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
132
diff
changeset
|
3708 sr1 = UploadInstance(_REMOTE, 'HierarchicalAnonymization/StructuredReports/IM0')['ID'] |
|
f0d4c4707e64
test_anonymize_relationships_3
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
132
diff
changeset
|
3709 mr1 = UploadInstance(_REMOTE, 'HierarchicalAnonymization/StructuredReports/IM631')['ID'] |
|
f0d4c4707e64
test_anonymize_relationships_3
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
132
diff
changeset
|
3710 study = 'ef351eb2-c1147229-062736b8-35a151e3-e32d526b' |
|
f0d4c4707e64
test_anonymize_relationships_3
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
132
diff
changeset
|
3711 |
|
f0d4c4707e64
test_anonymize_relationships_3
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
132
diff
changeset
|
3712 anonymized = DoPost(_REMOTE, '/studies/%s/anonymize' % study, |
|
f0d4c4707e64
test_anonymize_relationships_3
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
132
diff
changeset
|
3713 { "Keep" : [ "ContentSequence" ] }) ['ID'] |
|
f0d4c4707e64
test_anonymize_relationships_3
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
132
diff
changeset
|
3714 |
|
f0d4c4707e64
test_anonymize_relationships_3
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
132
diff
changeset
|
3715 a = DoGet(_REMOTE, '/studies/%s/instances' % anonymized) |
|
f0d4c4707e64
test_anonymize_relationships_3
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
132
diff
changeset
|
3716 self.assertEqual(2, len(a)) |
|
f0d4c4707e64
test_anonymize_relationships_3
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
132
diff
changeset
|
3717 |
|
f0d4c4707e64
test_anonymize_relationships_3
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
132
diff
changeset
|
3718 if DoGet(_REMOTE, '/instances/%s/content/Modality' % a[0]['ID']) == 'SR': |
|
f0d4c4707e64
test_anonymize_relationships_3
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
132
diff
changeset
|
3719 sr2 = a[0]['ID'] |
|
f0d4c4707e64
test_anonymize_relationships_3
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
132
diff
changeset
|
3720 mr2 = a[1]['ID'] |
|
f0d4c4707e64
test_anonymize_relationships_3
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
132
diff
changeset
|
3721 else: |
|
f0d4c4707e64
test_anonymize_relationships_3
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
132
diff
changeset
|
3722 sr2 = a[1]['ID'] |
|
f0d4c4707e64
test_anonymize_relationships_3
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
132
diff
changeset
|
3723 mr2 = a[0]['ID'] |
|
f0d4c4707e64
test_anonymize_relationships_3
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
132
diff
changeset
|
3724 |
|
f0d4c4707e64
test_anonymize_relationships_3
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
132
diff
changeset
|
3725 self.assertEqual(DoGet(_REMOTE, '/instances/%s/content/Modality' % sr1), |
|
f0d4c4707e64
test_anonymize_relationships_3
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
132
diff
changeset
|
3726 DoGet(_REMOTE, '/instances/%s/content/Modality' % sr2)) |
|
f0d4c4707e64
test_anonymize_relationships_3
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
132
diff
changeset
|
3727 self.assertEqual(DoGet(_REMOTE, '/instances/%s/content/Modality' % mr1), |
|
f0d4c4707e64
test_anonymize_relationships_3
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
132
diff
changeset
|
3728 DoGet(_REMOTE, '/instances/%s/content/Modality' % mr2)) |
|
f0d4c4707e64
test_anonymize_relationships_3
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
132
diff
changeset
|
3729 |
|
f0d4c4707e64
test_anonymize_relationships_3
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
132
diff
changeset
|
3730 mrUid1 = DoGet(_REMOTE, '/instances/%s' % mr1)['MainDicomTags']['SOPInstanceUID'] |
|
f0d4c4707e64
test_anonymize_relationships_3
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
132
diff
changeset
|
3731 mrUid2 = DoGet(_REMOTE, '/instances/%s' % mr2)['MainDicomTags']['SOPInstanceUID'] |
|
f0d4c4707e64
test_anonymize_relationships_3
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
132
diff
changeset
|
3732 mrSeries1 = DoGet(_REMOTE, '/instances/%s/content/SeriesInstanceUID' % mr1).strip('\x00') |
|
f0d4c4707e64
test_anonymize_relationships_3
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
132
diff
changeset
|
3733 mrSeries2 = DoGet(_REMOTE, '/instances/%s/content/SeriesInstanceUID' % mr2).strip('\x00') |
|
f0d4c4707e64
test_anonymize_relationships_3
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
132
diff
changeset
|
3734 mrStudy1 = DoGet(_REMOTE, '/instances/%s/content/StudyInstanceUID' % mr1).strip('\x00') |
|
f0d4c4707e64
test_anonymize_relationships_3
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
132
diff
changeset
|
3735 mrStudy2 = DoGet(_REMOTE, '/instances/%s/content/StudyInstanceUID' % mr2).strip('\x00') |
|
f0d4c4707e64
test_anonymize_relationships_3
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
132
diff
changeset
|
3736 |
|
f0d4c4707e64
test_anonymize_relationships_3
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
132
diff
changeset
|
3737 PATH1 = '/instances/%s/content/CurrentRequestedProcedureEvidenceSequence' |
|
f0d4c4707e64
test_anonymize_relationships_3
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
132
diff
changeset
|
3738 PATH2 = PATH1 + '/0/ReferencedSeriesSequence' |
|
f0d4c4707e64
test_anonymize_relationships_3
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
132
diff
changeset
|
3739 PATH3 = PATH2 + '/0/ReferencedSOPSequence' |
|
f0d4c4707e64
test_anonymize_relationships_3
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
132
diff
changeset
|
3740 PATH4 = PATH3 + '/0/ReferencedSOPInstanceUID' |
|
f0d4c4707e64
test_anonymize_relationships_3
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
132
diff
changeset
|
3741 PATH5 = PATH3 + '/0/ReferencedSOPClassUID' |
|
f0d4c4707e64
test_anonymize_relationships_3
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
132
diff
changeset
|
3742 |
|
f0d4c4707e64
test_anonymize_relationships_3
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
132
diff
changeset
|
3743 self.assertEqual(1, len(DoGet(_REMOTE, PATH1 % sr1))) |
|
f0d4c4707e64
test_anonymize_relationships_3
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
132
diff
changeset
|
3744 self.assertEqual(1, len(DoGet(_REMOTE, PATH2 % sr1))) |
|
f0d4c4707e64
test_anonymize_relationships_3
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
132
diff
changeset
|
3745 self.assertEqual(1, len(DoGet(_REMOTE, PATH3 % sr1))) |
|
f0d4c4707e64
test_anonymize_relationships_3
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
132
diff
changeset
|
3746 self.assertEqual(DoGet(_REMOTE, PATH4 % sr1), mrUid1) |
|
f0d4c4707e64
test_anonymize_relationships_3
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
132
diff
changeset
|
3747 self.assertEqual(mrSeries1, DoGet(_REMOTE, (PATH2 + '/0/SeriesInstanceUID') % sr1).strip('\x00')) |
|
f0d4c4707e64
test_anonymize_relationships_3
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
132
diff
changeset
|
3748 self.assertEqual(mrStudy1, DoGet(_REMOTE, (PATH1 + '/0/StudyInstanceUID') % sr1).strip('\x00')) |
|
f0d4c4707e64
test_anonymize_relationships_3
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
132
diff
changeset
|
3749 |
|
f0d4c4707e64
test_anonymize_relationships_3
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
132
diff
changeset
|
3750 self.assertEqual(1, len(DoGet(_REMOTE, PATH1 % sr2))) |
|
f0d4c4707e64
test_anonymize_relationships_3
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
132
diff
changeset
|
3751 self.assertEqual(1, len(DoGet(_REMOTE, PATH2 % sr2))) |
|
f0d4c4707e64
test_anonymize_relationships_3
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
132
diff
changeset
|
3752 self.assertEqual(1, len(DoGet(_REMOTE, PATH3 % sr2))) |
|
f0d4c4707e64
test_anonymize_relationships_3
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
132
diff
changeset
|
3753 self.assertEqual(DoGet(_REMOTE, PATH5 % sr1), DoGet(_REMOTE, PATH5 % sr2)) |
|
f0d4c4707e64
test_anonymize_relationships_3
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
132
diff
changeset
|
3754 |
|
f0d4c4707e64
test_anonymize_relationships_3
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
132
diff
changeset
|
3755 self.assertEqual(mrUid2, DoGet(_REMOTE, PATH4 % sr2).strip('\x00')) |
|
f0d4c4707e64
test_anonymize_relationships_3
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
132
diff
changeset
|
3756 self.assertEqual(mrSeries2, DoGet(_REMOTE, (PATH2 + '/0/SeriesInstanceUID') % sr2).strip('\x00')) |
|
f0d4c4707e64
test_anonymize_relationships_3
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
132
diff
changeset
|
3757 self.assertEqual(mrStudy2, DoGet(_REMOTE, (PATH1 + '/0/StudyInstanceUID') % sr2).strip('\x00')) |
|
f0d4c4707e64
test_anonymize_relationships_3
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
132
diff
changeset
|
3758 |
|
f0d4c4707e64
test_anonymize_relationships_3
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
132
diff
changeset
|
3759 content1 = DoGet(_REMOTE, '/instances/%s/tags?simplify' % sr1) ['ContentSequence'] |
|
f0d4c4707e64
test_anonymize_relationships_3
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
132
diff
changeset
|
3760 content2 = DoGet(_REMOTE, '/instances/%s/tags?simplify' % sr2) ['ContentSequence'] |
|
f0d4c4707e64
test_anonymize_relationships_3
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
132
diff
changeset
|
3761 self.assertEqual(str(content1), str(content2)) |
|
141
5de178abe4d8
test_bitbucket_issue_94
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
138
diff
changeset
|
3762 |
|
5de178abe4d8
test_bitbucket_issue_94
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
138
diff
changeset
|
3763 |
|
5de178abe4d8
test_bitbucket_issue_94
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
138
diff
changeset
|
3764 def test_bitbucket_issue_94(self): |
|
5de178abe4d8
test_bitbucket_issue_94
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
138
diff
changeset
|
3765 # "a simple instance modification should not modify FrameOfReferenceUID + ..." |
|
5de178abe4d8
test_bitbucket_issue_94
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
138
diff
changeset
|
3766 # https://bitbucket.org/sjodogne/orthanc/issues/94 |
|
5de178abe4d8
test_bitbucket_issue_94
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
138
diff
changeset
|
3767 i = UploadInstance(_REMOTE, 'Issue94.dcm')['ID'] |
|
5de178abe4d8
test_bitbucket_issue_94
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
138
diff
changeset
|
3768 |
|
5de178abe4d8
test_bitbucket_issue_94
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
138
diff
changeset
|
3769 source = DoGet(_REMOTE, '/instances/%s/attachments/dicom/data' % i) |
|
5de178abe4d8
test_bitbucket_issue_94
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
138
diff
changeset
|
3770 |
|
5de178abe4d8
test_bitbucket_issue_94
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
138
diff
changeset
|
3771 modified = DoPost(_REMOTE, '/instances/%s/modify' % i, |
|
5de178abe4d8
test_bitbucket_issue_94
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
138
diff
changeset
|
3772 { "Replace" : {"PatientID" : "toto"}, "Force": True}) |
|
5de178abe4d8
test_bitbucket_issue_94
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
138
diff
changeset
|
3773 |
|
5de178abe4d8
test_bitbucket_issue_94
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
138
diff
changeset
|
3774 anonymized = DoPost(_REMOTE, '/instances/%s/anonymize' % i) |
|
5de178abe4d8
test_bitbucket_issue_94
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
138
diff
changeset
|
3775 |
|
5de178abe4d8
test_bitbucket_issue_94
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
138
diff
changeset
|
3776 a = ExtractDicomTags(source, [ 'FrameOfReferenceUID' ]) |
|
5de178abe4d8
test_bitbucket_issue_94
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
138
diff
changeset
|
3777 self.assertEqual(1, len(a)) |
|
5de178abe4d8
test_bitbucket_issue_94
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
138
diff
changeset
|
3778 |
|
5de178abe4d8
test_bitbucket_issue_94
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
138
diff
changeset
|
3779 b = ExtractDicomTags(modified, [ 'FrameOfReferenceUID' ]) |
|
5de178abe4d8
test_bitbucket_issue_94
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
138
diff
changeset
|
3780 self.assertEqual(1, len(b)) |
|
5de178abe4d8
test_bitbucket_issue_94
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
138
diff
changeset
|
3781 |
|
5de178abe4d8
test_bitbucket_issue_94
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
138
diff
changeset
|
3782 c = ExtractDicomTags(anonymized, [ 'FrameOfReferenceUID' ]) |
|
5de178abe4d8
test_bitbucket_issue_94
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
138
diff
changeset
|
3783 self.assertEqual(1, len(c)) |
|
5de178abe4d8
test_bitbucket_issue_94
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
138
diff
changeset
|
3784 |
|
5de178abe4d8
test_bitbucket_issue_94
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
138
diff
changeset
|
3785 self.assertEqual(a, b) # Modified DICOM |
|
5de178abe4d8
test_bitbucket_issue_94
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
138
diff
changeset
|
3786 self.assertNotEqual(a, c) # Anonymized DICOM |
|
143
28d50ffac07d
test_metadata_origin
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
142
diff
changeset
|
3787 |
|
28d50ffac07d
test_metadata_origin
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
142
diff
changeset
|
3788 |
|
28d50ffac07d
test_metadata_origin
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
142
diff
changeset
|
3789 def test_metadata_origin(self): |
|
28d50ffac07d
test_metadata_origin
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
142
diff
changeset
|
3790 # Upload using the REST API |
|
144
7809fdf8056f
testing metadata?expand
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
143
diff
changeset
|
3791 i = UploadInstance(_REMOTE, 'Knee/T1/IM-0001-0001.dcm')['ID'] |
|
143
28d50ffac07d
test_metadata_origin
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
142
diff
changeset
|
3792 self.assertEqual('RestApi', DoGet(_REMOTE, '/instances/%s/metadata/Origin' % i)) |
|
28d50ffac07d
test_metadata_origin
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
142
diff
changeset
|
3793 self.assertEqual('', DoGet(_REMOTE, '/instances/%s/metadata/RemoteAET' % i)) |
|
28d50ffac07d
test_metadata_origin
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
142
diff
changeset
|
3794 self.assertNotEqual('', DoGet(_REMOTE, '/instances/%s/metadata/RemoteIP' % i)) |
|
28d50ffac07d
test_metadata_origin
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
142
diff
changeset
|
3795 self.assertRaises(Exception, lambda: DoGet(_REMOTE, '/instances/%s/metadata/CalledAET' % i)) |
|
28d50ffac07d
test_metadata_origin
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
142
diff
changeset
|
3796 self.assertEqual('alice', DoGet(_REMOTE, '/instances/%s/metadata/HttpUsername' % i)) |
|
28d50ffac07d
test_metadata_origin
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
142
diff
changeset
|
3797 |
|
144
7809fdf8056f
testing metadata?expand
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
143
diff
changeset
|
3798 m = DoGet(_REMOTE, '/instances/%s/metadata?expand' % i) |
|
7809fdf8056f
testing metadata?expand
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
143
diff
changeset
|
3799 self.assertEqual('RestApi', m['Origin']) |
|
7809fdf8056f
testing metadata?expand
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
143
diff
changeset
|
3800 self.assertEqual('', m['RemoteAET']) |
|
7809fdf8056f
testing metadata?expand
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
143
diff
changeset
|
3801 self.assertNotEqual('', m['RemoteIP']) |
|
7809fdf8056f
testing metadata?expand
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
143
diff
changeset
|
3802 self.assertFalse('CalledAET' in m) |
|
7809fdf8056f
testing metadata?expand
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
143
diff
changeset
|
3803 self.assertEqual('alice', m['HttpUsername']) |
|
7809fdf8056f
testing metadata?expand
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
143
diff
changeset
|
3804 |
|
7809fdf8056f
testing metadata?expand
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
143
diff
changeset
|
3805 self.assertEqual('1.2.840.10008.1.2.4.91', m['TransferSyntax']) |
|
7809fdf8056f
testing metadata?expand
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
143
diff
changeset
|
3806 self.assertEqual('1.2.840.10008.5.1.4.1.1.4', m['SopClassUid']) |
|
7809fdf8056f
testing metadata?expand
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
143
diff
changeset
|
3807 self.assertEqual('1', m['IndexInSeries']) |
|
7809fdf8056f
testing metadata?expand
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
143
diff
changeset
|
3808 self.assertTrue('ReceptionDate' in m) |
|
7809fdf8056f
testing metadata?expand
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
143
diff
changeset
|
3809 |
|
143
28d50ffac07d
test_metadata_origin
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
142
diff
changeset
|
3810 DoDelete(_REMOTE, '/instances/%s' % i) |
|
28d50ffac07d
test_metadata_origin
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
142
diff
changeset
|
3811 |
|
28d50ffac07d
test_metadata_origin
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
142
diff
changeset
|
3812 # Upload using the DICOM protocol |
|
28d50ffac07d
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3813 subprocess.check_call([ FindExecutable('storescu'), |
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3814 _REMOTE['Server'], str(_REMOTE['DicomPort']), |
|
144
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3815 GetDatabasePath('Knee/T1/IM-0001-0001.dcm'), |
|
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|
3816 '-xw' ]) # Propose JPEG2000 |
|
143
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3817 self.assertEqual('DicomProtocol', DoGet(_REMOTE, '/instances/%s/metadata/Origin' % i)) |
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3818 self.assertEqual('STORESCU', DoGet(_REMOTE, '/instances/%s/metadata/RemoteAET' % i)) |
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3819 self.assertNotEqual('', DoGet(_REMOTE, '/instances/%s/metadata/RemoteIP' % i)) |
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3820 self.assertEqual('ANY-SCP', DoGet(_REMOTE, '/instances/%s/metadata/CalledAET' % i)) |
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3821 self.assertRaises(Exception, lambda: DoGet(_REMOTE, '/instances/%s/metadata/HttpUsername' % i)) |
|
144
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3822 |
|
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3823 m = DoGet(_REMOTE, '/instances/%s/metadata?expand' % i) |
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3824 self.assertEqual('DicomProtocol', m['Origin']) |
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3825 self.assertEqual('STORESCU', m['RemoteAET']) |
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3826 self.assertNotEqual('', m['RemoteIP']) |
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3827 self.assertEqual('ANY-SCP', m['CalledAET']) |
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|
3828 self.assertFalse('HttpUsername' in m) |
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|
3829 |
|
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changeset
|
3830 self.assertEqual('1.2.840.10008.1.2.4.91', m['TransferSyntax']) |
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changeset
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3831 self.assertEqual('1.2.840.10008.5.1.4.1.1.4', m['SopClassUid']) |
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|
3832 self.assertEqual('1', m['IndexInSeries']) |
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|
3833 self.assertTrue('ReceptionDate' in m) |
| 147 | 3834 |
| 3835 | |
| 3836 def test_lua_deadlock(self): | |
| 3837 # Rana Asim Wajid (2018-07-14): "It does seem that the issue | |
| 3838 # is with the lua script I'm using for conversion of images to | |
| 3839 # JPEG2000. When the script is used with 1.4.0 the first | |
| 3840 # instance appears to be stored and then everything just | |
| 3841 # halts, ie Orthanc wont respond to anything after that." | |
| 3842 # https://groups.google.com/d/msg/orthanc-users/Rc-Beb42xc8/JUgdzrmCAgAJ | |
| 174 | 3843 InstallLuaScriptFromPath(_REMOTE, 'Lua/Jpeg2000Conversion.lua') |
| 147 | 3844 |
| 3845 subprocess.check_call([ FindExecutable('storescu'), | |
| 3846 _REMOTE['Server'], str(_REMOTE['DicomPort']), | |
| 3847 GetDatabasePath('Brainix/Flair/IM-0001-0001.dcm'), | |
| 3848 GetDatabasePath('Brainix/Flair/IM-0001-0002.dcm'), | |
| 3849 ]) | |
| 3850 | |
| 3851 instances = DoGet(_REMOTE, '/instances') | |
| 3852 self.assertEqual(2, len(instances)) | |
| 3853 | |
| 3854 t1 = DoGet(_REMOTE, '/instances/%s/metadata/TransferSyntax' % instances[0]) | |
| 3855 t2 = DoGet(_REMOTE, '/instances/%s/metadata/TransferSyntax' % instances[1]) | |
| 175 | 3856 self.assertEqual('1.2.840.10008.1.2.4.90', t1) # this will fail if libgdcm-tools is not installed |
| 147 | 3857 self.assertEqual(t1, t2); |
|
154
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|
3858 |
|
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test_find_group_length
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diff
changeset
|
3859 |
|
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test_find_group_length
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changeset
|
3860 def test_find_group_length(self): |
|
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changeset
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3861 # Orthanc <= 1.4.1 fails to answer C-FIND queries that contain |
|
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|
3862 # one of the Generic Group Length tags (*, 0x0000) |
|
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changeset
|
3863 a = UploadInstance(_REMOTE, 'Brainix/Flair/IM-0001-0001.dcm')['ID'] |
|
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|
3864 result = CallFindScu([ '-k', '0008,0052=STUDY', '-k', '0008,0000=80' ]) |
|
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|
3865 self.assertFalse('UnableToProcess' in result) |
|
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changeset
|
3866 self.assertFalse('E:' in result) |
|
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3867 |
|
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changeset
|
3868 |
|
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|
3869 def test_split(self): |
|
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3870 UploadInstance(_REMOTE, 'Knee/T1/IM-0001-0001.dcm') |
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|
3871 UploadInstance(_REMOTE, 'Knee/T2/IM-0001-0001.dcm') |
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|
3872 study = '0a9b3153-2512774b-2d9580de-1fc3dcf6-3bd83918' |
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|
3873 t1 = '6de73705-c4e65c1b-9d9ea1b5-cabcd8e7-f15e4285' |
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diff
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|
3874 t2 = 'bbf7a453-0d34251a-03663b55-46bb31b9-ffd74c59' |
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|
3875 |
|
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|
3876 self.assertEqual(1, len(DoGet(_REMOTE, '/studies'))) |
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|
3877 self.assertEqual(2, len(DoGet(_REMOTE, '/series'))) |
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diff
changeset
|
3878 |
|
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diff
changeset
|
3879 info = DoGet(_REMOTE, '/studies/%s' % study) |
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diff
changeset
|
3880 self.assertTrue('ReferringPhysicianName' in info['MainDicomTags']) |
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diff
changeset
|
3881 |
|
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diff
changeset
|
3882 job = MonitorJob2(_REMOTE, lambda: DoPost |
|
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diff
changeset
|
3883 (_REMOTE, '/studies/%s/split' % study, { |
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diff
changeset
|
3884 'Series' : [ t2 ], |
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diff
changeset
|
3885 'Replace' : { 'PatientName' : 'Hello' }, |
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diff
changeset
|
3886 'Remove' : [ 'ReferringPhysicianName' ], |
| 181 | 3887 'KeepSource' : False, |
| 3888 'Asynchronous' : True | |
|
179
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diff
changeset
|
3889 })) |
|
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diff
changeset
|
3890 |
|
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diff
changeset
|
3891 self.assertNotEqual(None, job) |
|
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diff
changeset
|
3892 |
|
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diff
changeset
|
3893 studies = set(DoGet(_REMOTE, '/studies')) |
|
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diff
changeset
|
3894 self.assertEqual(2, len(studies)) |
|
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diff
changeset
|
3895 |
|
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177
diff
changeset
|
3896 series = set(DoGet(_REMOTE, '/series')) |
|
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diff
changeset
|
3897 self.assertEqual(2, len(series)) |
|
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diff
changeset
|
3898 self.assertTrue(t1 in series) |
|
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diff
changeset
|
3899 |
|
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diff
changeset
|
3900 study2 = DoGet(_REMOTE, '/jobs/%s' % job)['Content']['TargetStudy'] |
|
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diff
changeset
|
3901 self.assertTrue(study in studies) |
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diff
changeset
|
3902 self.assertTrue(study2 in studies) |
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diff
changeset
|
3903 |
|
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diff
changeset
|
3904 info = DoGet(_REMOTE, '/studies/%s' % study2) |
|
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diff
changeset
|
3905 self.assertTrue('Hello', info['PatientMainDicomTags']['PatientName']) |
|
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diff
changeset
|
3906 self.assertFalse('ReferringPhysicianName' in info['MainDicomTags']) |
|
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testing split/merge
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diff
changeset
|
3907 |
|
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testing split/merge
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diff
changeset
|
3908 |
|
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diff
changeset
|
3909 def test_merge(self): |
|
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diff
changeset
|
3910 UploadInstance(_REMOTE, 'Knee/T1/IM-0001-0001.dcm') |
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diff
changeset
|
3911 UploadInstance(_REMOTE, 'Brainix/Flair/IM-0001-0001.dcm')['ID'] |
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diff
changeset
|
3912 knee = '0a9b3153-2512774b-2d9580de-1fc3dcf6-3bd83918' |
|
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diff
changeset
|
3913 t1 = '6de73705-c4e65c1b-9d9ea1b5-cabcd8e7-f15e4285' |
|
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diff
changeset
|
3914 brainix = '27f7126f-4f66fb14-03f4081b-f9341db2-53925988' |
|
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diff
changeset
|
3915 flair = '1e2c125c-411b8e86-3f4fe68e-a7584dd3-c6da78f0' |
|
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diff
changeset
|
3916 |
|
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diff
changeset
|
3917 self.assertEqual(2, len(DoGet(_REMOTE, '/studies'))) |
|
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diff
changeset
|
3918 self.assertEqual(2, len(DoGet(_REMOTE, '/series'))) |
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diff
changeset
|
3919 |
|
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diff
changeset
|
3920 job = MonitorJob2(_REMOTE, lambda: DoPost |
|
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diff
changeset
|
3921 (_REMOTE, '/studies/%s/merge' % knee, { |
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diff
changeset
|
3922 'Resources' : [ brainix ], |
| 181 | 3923 'KeepSource' : True, |
| 3924 'Synchronous' : False | |
|
179
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changeset
|
3925 })) |
|
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diff
changeset
|
3926 |
|
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diff
changeset
|
3927 self.assertNotEqual(None, job) |
|
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diff
changeset
|
3928 |
|
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diff
changeset
|
3929 studies = set(DoGet(_REMOTE, '/studies')) |
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|
3930 self.assertEqual(2, len(studies)) |
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|
3931 self.assertTrue(knee in studies) |
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|
3932 self.assertTrue(brainix in studies) |
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changeset
|
3933 |
|
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diff
changeset
|
3934 series = set(DoGet(_REMOTE, '/studies/%s' % knee)['Series']) |
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changeset
|
3935 self.assertTrue(t1 in series) |
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changeset
|
3936 series.remove(t1) |
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diff
changeset
|
3937 self.assertEqual(1, len(series)) |
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changeset
|
3938 |
|
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|
3939 instances = DoGet(_REMOTE, '/series/%s' % list(series)[0])['Instances'] |
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3940 self.assertEqual(1, len(instances)) |
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3941 merged = DoGet(_REMOTE, '/instances/%s/tags?simplify' % instances[0]) |
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3942 |
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3943 instances = DoGet(_REMOTE, '/series/%s' % t1)['Instances'] |
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3944 self.assertEqual(1, len(instances)) |
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3945 a = DoGet(_REMOTE, '/instances/%s/tags?simplify' % instances[0]) |
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3946 |
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3947 instances = DoGet(_REMOTE, '/series/%s' % flair)['Instances'] |
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3948 self.assertEqual(1, len(instances)) |
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3949 b = DoGet(_REMOTE, '/instances/%s/tags?simplify' % instances[0]) |
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3950 |
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3951 tags = DoGet(_REMOTE, '/studies/%s' % knee) |
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3952 |
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3953 for key in tags['PatientMainDicomTags']: |
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3954 self.assertEqual(a[key], merged[key]) |
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3955 if (key in b and key != 'PatientSex'): |
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3956 self.assertNotEqual(a[key], b[key]) |
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3957 |
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3958 for key in tags['MainDicomTags']: |
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3959 # Not in the patient/study module |
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3960 if (not key in [ 'InstitutionName', |
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3961 'RequestingPhysician', |
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3962 'RequestedProcedureDescription', ]): |
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3963 self.assertEqual(a[key], merged[key]) |
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3964 if (key in b): |
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3965 self.assertNotEqual(a[key], b[key]) |
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3966 |
| 187 | 3967 |
| 3968 def test_async_archive(self): | |
| 3969 # Testing the asynchronous generation of archives/medias (new | |
| 3970 # in Orthanc 1.4.3) | |
| 3971 UploadInstance(_REMOTE, 'Knee/T1/IM-0001-0001.dcm') | |
| 3972 UploadInstance(_REMOTE, 'Knee/T2/IM-0001-0001.dcm') | |
| 3973 | |
| 3974 kneeT1 = '6de73705-c4e65c1b-9d9ea1b5-cabcd8e7-f15e4285' | |
| 3975 kneeT2 = 'bbf7a453-0d34251a-03663b55-46bb31b9-ffd74c59' | |
| 3976 | |
| 3977 job = MonitorJob2(_REMOTE, lambda: DoPost | |
| 3978 (_REMOTE, '/studies/%s/archive' % kneeT1, { | |
| 3979 'Synchronous' : False | |
| 3980 })) | |
| 3981 | |
| 3982 z = GetArchive(_REMOTE, '/jobs/%s/archive' % job) | |
| 3983 self.assertEqual(1, len(z.namelist())) | |
| 3984 self.assertFalse('DICOMDIR' in z.namelist()) | |
| 3985 | |
| 3986 job2 = MonitorJob2(_REMOTE, lambda: DoPost | |
| 3987 (_REMOTE, '/studies/%s/media' % kneeT1, { | |
| 3988 'Synchronous' : False | |
| 3989 })) | |
| 3990 | |
| 3991 # The archive from the first job has been replaced by the | |
| 3992 # archive from second job (as MediaArchiveSize == 1) | |
| 3993 self.assertRaises(Exception, lambda: GetArchive(_REMOTE, '/jobs/%s/archive' % job)) | |
| 3994 | |
| 3995 z = GetArchive(_REMOTE, '/jobs/%s/archive' % job2) | |
| 3996 self.assertEqual(2, len(z.namelist())) | |
| 3997 self.assertTrue('DICOMDIR' in z.namelist()) | |
| 3998 | |
| 3999 job = MonitorJob2(_REMOTE, lambda: DoPost | |
| 4000 (_REMOTE, '/tools/create-archive', { | |
| 4001 'Synchronous' : False, | |
| 4002 'Resources' : [ kneeT1, kneeT2 ], | |
| 4003 })) | |
| 4004 | |
| 4005 z = GetArchive(_REMOTE, '/jobs/%s/archive' % job) | |
| 4006 self.assertEqual(2, len(z.namelist())) | |
| 4007 self.assertFalse('DICOMDIR' in z.namelist()) | |
| 4008 | |
| 4009 job = MonitorJob2(_REMOTE, lambda: DoPost | |
| 4010 (_REMOTE, '/tools/create-media', { | |
| 4011 'Synchronous' : False, | |
| 4012 'Resources' : [ kneeT1, kneeT2 ], | |
| 4013 })) | |
| 4014 | |
| 4015 z = GetArchive(_REMOTE, '/jobs/%s/archive' % job) | |
| 4016 self.assertEqual(3, len(z.namelist())) | |
| 4017 self.assertTrue('DICOMDIR' in z.namelist()) | |
|
188
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4018 |
| 187 | 4019 |
|
188
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4020 def test_queries_hierarchy(self): |
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4021 UploadInstance(_REMOTE, 'Knee/T1/IM-0001-0001.dcm') |
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4022 |
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4023 tags = { |
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4024 'NumberOfPatientRelatedInstances' : '', |
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4025 'NumberOfPatientRelatedSeries' : '', |
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4026 'NumberOfPatientRelatedStudies' : '', |
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4027 'NumberOfStudyRelatedInstances' : '', |
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|
4028 'NumberOfStudyRelatedSeries' : '', |
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4029 'NumberOfSeriesRelatedInstances' : '', |
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4030 } |
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4031 |
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4032 patient = DoPost(_REMOTE, '/modalities/self/query', { |
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4033 'Level' : 'Patient', |
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4034 'Query' : tags |
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4035 }) ['ID'] |
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4036 |
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4037 study = DoPost(_REMOTE, '/modalities/self/query', { |
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4038 'Level' : 'Study', |
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4039 'Query' : tags |
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4040 }) ['ID'] |
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4041 |
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4042 series = DoPost(_REMOTE, '/modalities/self/query', { |
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4043 'Level' : 'Series', |
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4044 'Query' : tags |
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4045 }) ['ID'] |
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4046 |
|
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4047 instance = DoPost(_REMOTE, '/modalities/self/query', { |
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4048 'Level' : 'Instance', |
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4049 'Query' : tags |
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4050 }) ['ID'] |
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4051 |
|
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4052 p = DoGet(_REMOTE, '/queries/%s/answers?expand&simplify' % patient) |
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4053 self.assertEqual(1, len(p)) |
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4054 self.assertEqual('887', p[0]['PatientID']) |
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4055 self.assertEqual('1', p[0]['NumberOfPatientRelatedInstances']) |
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4056 self.assertEqual('1', p[0]['NumberOfPatientRelatedSeries']) |
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4057 self.assertEqual('1', p[0]['NumberOfPatientRelatedStudies']) |
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4058 self.assertFalse('NumberOfStudyRelatedInstances' in p[0]) |
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4059 self.assertFalse('NumberOfStudyRelatedSeries' in p[0]) |
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4060 self.assertFalse('NumberOfSeriesRelatedInstances' in p[0]) |
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4061 |
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4062 p = DoGet(_REMOTE, '/queries/%s/answers?expand&simplify' % study) |
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4063 self.assertEqual(1, len(p)) |
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4064 self.assertEqual('2.16.840.1.113669.632.20.121711.10000160881', p[0]['StudyInstanceUID']) |
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4065 self.assertEqual('1', p[0]['NumberOfStudyRelatedInstances']) |
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4066 self.assertEqual('1', p[0]['NumberOfStudyRelatedSeries']) |
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4067 self.assertFalse('NumberOfPatientRelatedInstances' in p[0]) |
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4068 self.assertFalse('NumberOfPatientRelatedSeries' in p[0]) |
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4069 self.assertFalse('NumberOfPatientRelatedInstances' in p[0]) |
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4070 self.assertFalse('NumberOfSeriesRelatedInstances' in p[0]) |
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4071 |
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4072 p = DoGet(_REMOTE, '/queries/%s/answers?expand&simplify' % series) |
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4073 self.assertEqual(1, len(p)) |
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4074 self.assertEqual('1.3.46.670589.11.17521.5.0.3124.2008081908564160709', p[0]['SeriesInstanceUID']) |
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4075 self.assertEqual('1', p[0]['NumberOfSeriesRelatedInstances']) |
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4076 self.assertFalse('NumberOfPatientRelatedInstances' in p[0]) |
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4077 self.assertFalse('NumberOfPatientRelatedSeries' in p[0]) |
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4078 self.assertFalse('NumberOfPatientRelatedInstances' in p[0]) |
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4079 self.assertFalse('NumberOfStudyRelatedInstances' in p[0]) |
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4080 self.assertFalse('NumberOfStudyRelatedSeries' in p[0]) |
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4081 |
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4082 p = DoGet(_REMOTE, '/queries/%s/answers?expand&simplify' % instance) |
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4083 self.assertEqual(1, len(p)) |
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4084 self.assertEqual('1.3.46.670589.11.17521.5.0.3124.2008081908590448738', p[0]['SOPInstanceUID']) |
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7d585263808b
new test: test_queries_hierarchy
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diff
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4085 |
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new test: test_queries_hierarchy
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diff
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4086 j = DoPost(_REMOTE, '/queries/%s/answers/0/query-studies' % patient, |
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7d585263808b
new test: test_queries_hierarchy
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diff
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4087 { 'Query' : tags }) ['ID'] |
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new test: test_queries_hierarchy
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diff
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4088 self.assertEqual(DoGet(_REMOTE, '/queries/%s/answers?expand&simplify' % j), |
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diff
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4089 DoGet(_REMOTE, '/queries/%s/answers?expand&simplify' % study)) |
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7d585263808b
new test: test_queries_hierarchy
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diff
changeset
|
4090 |
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7d585263808b
new test: test_queries_hierarchy
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diff
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4091 j = DoPost(_REMOTE, '/queries/%s/answers/0/query-series' % patient, |
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7d585263808b
new test: test_queries_hierarchy
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parents:
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diff
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|
4092 { 'Query' : tags }) ['ID'] |
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new test: test_queries_hierarchy
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diff
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4093 self.assertEqual(DoGet(_REMOTE, '/queries/%s/answers?expand&simplify' % j), |
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new test: test_queries_hierarchy
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diff
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|
4094 DoGet(_REMOTE, '/queries/%s/answers?expand&simplify' % series)) |
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7d585263808b
new test: test_queries_hierarchy
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diff
changeset
|
4095 |
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new test: test_queries_hierarchy
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diff
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4096 j = DoPost(_REMOTE, '/queries/%s/answers/0/query-instances' % patient, |
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7d585263808b
new test: test_queries_hierarchy
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diff
changeset
|
4097 { 'Query' : tags }) ['ID'] |
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new test: test_queries_hierarchy
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diff
changeset
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4098 self.assertEqual(DoGet(_REMOTE, '/queries/%s/answers?expand&simplify' % j), |
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|
4099 DoGet(_REMOTE, '/queries/%s/answers?expand&simplify' % instance)) |
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7d585263808b
new test: test_queries_hierarchy
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|
4100 |
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4101 j = DoPost(_REMOTE, '/queries/%s/answers/0/query-series' % study, |
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new test: test_queries_hierarchy
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changeset
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4102 { 'Query' : tags }) ['ID'] |
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diff
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4103 self.assertEqual(DoGet(_REMOTE, '/queries/%s/answers?expand&simplify' % j), |
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new test: test_queries_hierarchy
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|
4104 DoGet(_REMOTE, '/queries/%s/answers?expand&simplify' % series)) |
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7d585263808b
new test: test_queries_hierarchy
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changeset
|
4105 |
|
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new test: test_queries_hierarchy
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4106 j = DoPost(_REMOTE, '/queries/%s/answers/0/query-instances' % study, |
|
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new test: test_queries_hierarchy
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changeset
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4107 { 'Query' : tags }) ['ID'] |
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4108 self.assertEqual(DoGet(_REMOTE, '/queries/%s/answers?expand&simplify' % j), |
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diff
changeset
|
4109 DoGet(_REMOTE, '/queries/%s/answers?expand&simplify' % instance)) |
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new test: test_queries_hierarchy
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|
4110 |
|
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new test: test_queries_hierarchy
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diff
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|
4111 j = DoPost(_REMOTE, '/queries/%s/answers/0/query-instances' % series, |
|
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new test: test_queries_hierarchy
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diff
changeset
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4112 { 'Query' : tags }) ['ID'] |
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new test: test_queries_hierarchy
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parents:
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diff
changeset
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4113 self.assertEqual(DoGet(_REMOTE, '/queries/%s/answers?expand&simplify' % j), |
|
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new test: test_queries_hierarchy
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parents:
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4114 DoGet(_REMOTE, '/queries/%s/answers?expand&simplify' % instance)) |
|
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new test: test_queries_hierarchy
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changeset
|
4115 |
|
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new test: test_queries_hierarchy
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diff
changeset
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4116 |