Mercurial > hg > orthanc-tests
annotate Tests/Tests.py @ 17:7c8500991a12
karsten
| author | Sebastien Jodogne <s.jodogne@gmail.com> |
|---|---|
| date | Fri, 19 Jun 2015 08:56:52 +0200 |
| parents | 2e5dbbbe3889 |
| children | 16c37933384d |
| rev | line source |
|---|---|
| 3 | 1 # Orthanc - A Lightweight, RESTful DICOM Store |
| 2 # Copyright (C) 2012-2015 Sebastien Jodogne, Medical Physics | |
| 3 # Department, University Hospital of Liege, Belgium | |
| 4 # | |
| 5 # This program is free software: you can redistribute it and/or | |
| 6 # modify it under the terms of the GNU General Public License as | |
| 7 # published by the Free Software Foundation, either version 3 of the | |
| 8 # License, or (at your option) any later version. | |
| 9 # | |
| 10 # This program is distributed in the hope that it will be useful, but | |
| 11 # WITHOUT ANY WARRANTY; without even the implied warranty of | |
| 12 # MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU | |
| 13 # General Public License for more details. | |
| 14 # | |
| 15 # You should have received a copy of the GNU General Public License | |
| 16 # along with this program. If not, see <http://www.gnu.org/licenses/>. | |
| 17 | |
| 18 | |
| 14 | 19 import tempfile |
| 3 | 20 import unittest |
| 21 | |
| 11 | 22 from PIL import ImageChops |
| 3 | 23 from Toolbox import * |
| 13 | 24 from xml.dom import minidom |
| 3 | 25 |
| 26 _LOCAL = None | |
| 27 _REMOTE = None | |
| 28 | |
| 29 | |
| 30 def SetOrthancParameters(local, remote): | |
| 31 global _LOCAL, _REMOTE | |
| 32 _LOCAL = local | |
| 33 _REMOTE = remote | |
| 34 | |
| 35 | |
| 14 | 36 def ExtractDicomTags(rawDicom, tags): |
| 37 with tempfile.NamedTemporaryFile(delete = True) as f: | |
| 38 f.write(rawDicom) | |
| 39 f.flush() | |
| 40 data = subprocess.check_output([ 'dcm2xml', f.name ]) | |
| 41 | |
| 42 result = [] | |
| 43 for tag in tags: | |
| 44 match = re.search('<element[^>]+name="%s">([^>]*)</element>' % tag, data) | |
| 45 if match == None: | |
| 46 result.append('') | |
| 47 else: | |
| 48 result.append(match.group(1)) | |
| 49 | |
| 50 return result | |
| 51 | |
| 52 | |
| 15 | 53 def InstallLuaScript(path): |
| 54 with open(GetDatabasePath(path), 'r') as f: | |
| 55 DoPost(_REMOTE, '/tools/execute-script', f.read(), 'application/lua') | |
| 56 | |
| 57 | |
| 58 def UninstallLuaCallbacks(): | |
| 59 DoPost(_REMOTE, '/tools/execute-script', 'function OnStoredInstance() end', 'application/lua') | |
| 60 | |
| 61 | |
| 62 | |
| 3 | 63 class Orthanc(unittest.TestCase): |
| 64 def setUp(self): | |
| 65 DropOrthanc(_LOCAL) | |
| 66 DropOrthanc(_REMOTE) | |
| 67 | |
| 68 def test_system(self): | |
| 69 self.assertTrue('Version' in DoGet(_REMOTE, '/system')) | |
| 70 self.assertEqual('0', DoGet(_REMOTE, '/statistics')['TotalDiskSize']) | |
| 71 self.assertEqual('0', DoGet(_REMOTE, '/statistics')['TotalUncompressedSize']) | |
| 72 | |
| 73 def test_upload(self): | |
| 74 u = UploadInstance(_REMOTE, 'DummyCT.dcm') | |
| 75 self.assertEqual('Success', u['Status']) | |
| 76 u = UploadInstance(_REMOTE, 'DummyCT.dcm') | |
| 77 self.assertEqual('AlreadyStored', u['Status']) | |
| 78 self.assertEqual(1, len(DoGet(_REMOTE, '/patients'))) | |
| 79 self.assertEqual(1, len(DoGet(_REMOTE, '/studies'))) | |
| 80 self.assertEqual(1, len(DoGet(_REMOTE, '/series'))) | |
| 81 self.assertEqual(1, len(DoGet(_REMOTE, '/instances'))) | |
| 82 | |
| 83 i = DoGet(_REMOTE, '/instances/%s/simplified-tags' % u['ID']) | |
| 84 self.assertEqual('20070101', i['StudyDate']) | |
| 85 | |
| 86 | |
| 5 | 87 def test_upload_2(self): |
| 3 | 88 i = UploadInstance(_REMOTE, 'DummyCT.dcm')['ID'] |
| 89 instance = DoGet(_REMOTE, '/instances/%s' % i) | |
| 90 self.assertEqual(i, instance['ID']) | |
| 91 self.assertEqual('1.2.840.113619.2.176.2025.1499492.7040.1171286242.109', | |
| 92 instance['MainDicomTags']['SOPInstanceUID']) | |
| 93 | |
| 94 series = DoGet(_REMOTE, '/series/%s' % instance['ParentSeries']) | |
| 95 self.assertEqual('1.2.840.113619.2.176.2025.1499492.7391.1171285944.394', | |
| 96 series['MainDicomTags']['SeriesInstanceUID']) | |
| 97 | |
| 98 study = DoGet(_REMOTE, '/studies/%s' % series['ParentStudy']) | |
| 99 self.assertEqual('1.2.840.113619.2.176.2025.1499492.7391.1171285944.390', | |
| 100 study['MainDicomTags']['StudyInstanceUID']) | |
| 101 | |
| 102 patient = DoGet(_REMOTE, '/patients/%s' % study['ParentPatient']) | |
| 103 self.assertEqual('ozp00SjY2xG', | |
| 104 patient['MainDicomTags']['PatientID']) | |
| 105 | |
| 106 dicom = DoGet(_REMOTE, '/instances/%s/file' % instance['ID']) | |
| 107 self.assertEqual(2472, len(dicom)) | |
| 108 self.assertEqual('3e29b869978b6db4886355a2b1132124', ComputeMD5(dicom)) | |
| 109 self.assertEqual(1, len(DoGet(_REMOTE, '/instances/%s/frames' % i))) | |
| 110 self.assertEqual('TWINOW', DoGet(_REMOTE, '/instances/%s/simplified-tags' % i)['StationName']) | |
| 111 self.assertEqual('TWINOW', DoGet(_REMOTE, '/instances/%s/tags' % i)['0008,1010']['Value']) | |
| 112 | |
| 113 | |
| 5 | 114 def test_images(self): |
| 115 i = UploadInstance(_REMOTE, 'Phenix/IM-0001-0001.dcm')['ID'] | |
| 116 self.assertEqual(1, len(DoGet(_REMOTE, '/instances/%s/frames' % i))) | |
| 3 | 117 |
| 5 | 118 im = GetImage(_REMOTE, '/instances/%s/preview' % i) |
| 119 self.assertEqual("L", im.mode) | |
| 120 self.assertEqual(512, im.size[0]) | |
| 121 self.assertEqual(358, im.size[1]) | |
| 122 | |
| 123 im = GetImage(_REMOTE, '/instances/%s/image-uint8' % i) | |
| 124 self.assertEqual("L", im.mode) | |
| 125 self.assertEqual(512, im.size[0]) | |
| 126 self.assertEqual(358, im.size[1]) | |
| 127 | |
| 128 im = GetImage(_REMOTE, '/instances/%s/image-uint16' % i) | |
| 129 self.assertEqual(512, im.size[0]) | |
| 130 self.assertEqual(358, im.size[1]) | |
| 131 | |
| 132 im = GetImage(_REMOTE, '/instances/%s/frames/0/preview' % i) | |
| 133 self.assertEqual("L", im.mode) | |
| 134 self.assertEqual(512, im.size[0]) | |
| 135 self.assertEqual(358, im.size[1]) | |
| 136 | |
| 137 im = GetImage(_REMOTE, '/instances/%s/frames/0/image-uint8' % i) | |
| 138 self.assertEqual("L", im.mode) | |
| 139 self.assertEqual(512, im.size[0]) | |
| 140 self.assertEqual(358, im.size[1]) | |
| 141 | |
| 142 im = GetImage(_REMOTE, '/instances/%s/frames/0/image-uint16' % i) | |
| 143 self.assertEqual(512, im.size[0]) | |
| 144 self.assertEqual(358, im.size[1]) | |
| 145 | |
| 6 | 146 |
| 147 def test_hierarchy(self): | |
| 148 UploadFolder(_REMOTE, 'Brainix/Epi') | |
| 149 UploadFolder(_REMOTE, 'Brainix/Flair') | |
| 150 UploadFolder(_REMOTE, 'Knee/T1') | |
| 151 UploadFolder(_REMOTE, 'Knee/T2') | |
| 152 | |
| 153 p = DoGet(_REMOTE, '/patients') | |
| 154 s = DoGet(_REMOTE, '/studies') | |
| 155 t = DoGet(_REMOTE, '/series') | |
| 156 self.assertEqual(2, len(p)) | |
| 157 self.assertEqual(2, len(s)) | |
| 158 self.assertEqual(4, len(t)) | |
| 159 self.assertEqual(94, len(DoGet(_REMOTE, '/instances'))) | |
| 160 | |
| 161 brainixPatient = '16738bc3-e47ed42a-43ce044c-a3414a45-cb069bd0' | |
| 162 brainixStudy = '27f7126f-4f66fb14-03f4081b-f9341db2-53925988' | |
| 163 brainixEpi = '2ac1316d-3e432022-62eabff2-c59f5475-9b1ac3f8' | |
| 164 brainixFlair = '1e2c125c-411b8e86-3f4fe68e-a7584dd3-c6da78f0' | |
| 165 | |
| 166 kneePatient = 'ca29faea-b6a0e17f-067743a1-8b778011-a48b2a17' | |
| 167 kneeStudy = '0a9b3153-2512774b-2d9580de-1fc3dcf6-3bd83918' | |
| 168 kneeT1 = '6de73705-c4e65c1b-9d9ea1b5-cabcd8e7-f15e4285' | |
| 169 kneeT2 = 'bbf7a453-0d34251a-03663b55-46bb31b9-ffd74c59' | |
| 170 | |
| 171 self.assertTrue(brainixPatient in p) | |
| 172 self.assertTrue(kneePatient in p) | |
| 173 self.assertTrue(brainixStudy in s) | |
| 174 self.assertTrue(kneeStudy in s) | |
| 175 self.assertTrue(brainixEpi in t) | |
| 176 self.assertTrue(brainixFlair in t) | |
| 177 self.assertTrue(kneeT1 in t) | |
| 178 self.assertTrue(kneeT2 in t) | |
| 179 | |
| 180 self.assertEqual(44, len(DoGet(_REMOTE, '/patients/%s/instances' % brainixPatient))) | |
| 181 self.assertEqual(2, len(DoGet(_REMOTE, '/patients/%s/series' % brainixPatient))) | |
| 182 self.assertEqual(1, len(DoGet(_REMOTE, '/patients/%s/studies' % brainixPatient))) | |
| 183 | |
| 184 self.assertEqual(50, len(DoGet(_REMOTE, '/patients/%s/instances' % kneePatient))) | |
| 185 self.assertEqual(2, len(DoGet(_REMOTE, '/patients/%s/series' % kneePatient))) | |
| 186 self.assertEqual(1, len(DoGet(_REMOTE, '/patients/%s/studies' % kneePatient))) | |
| 187 | |
| 188 self.assertEqual(2, len(DoGet(_REMOTE, '/studies/%s/series' % brainixStudy))) | |
| 189 self.assertEqual(44, len(DoGet(_REMOTE, '/studies/%s/instances' % brainixStudy))) | |
| 190 | |
| 191 self.assertEqual(2, len(DoGet(_REMOTE, '/studies/%s/series' % kneeStudy))) | |
| 192 self.assertEqual(50, len(DoGet(_REMOTE, '/studies/%s/instances' % kneeStudy))) | |
| 193 | |
| 194 self.assertEqual(22, len(DoGet(_REMOTE, '/series/%s/instances' % brainixEpi))) | |
| 195 self.assertEqual(22, len(DoGet(_REMOTE, '/series/%s/instances' % brainixFlair))) | |
| 196 self.assertEqual(24, len(DoGet(_REMOTE, '/series/%s/instances' % kneeT1))) | |
| 197 self.assertEqual(26, len(DoGet(_REMOTE, '/series/%s/instances' % kneeT2))) | |
| 198 | |
| 199 for patient in p: | |
| 200 for study in DoGet(_REMOTE, '/patients/%s/studies' % patient): | |
| 201 self.assertEqual(patient, study['ParentPatient']) | |
| 202 for series in DoGet(_REMOTE, '/studies/%s/series' % study['ID']): | |
| 203 self.assertEqual(study['ID'], series['ParentStudy']) | |
| 204 for instance in DoGet(_REMOTE, '/series/%s/instances' % series['ID']): | |
| 205 self.assertEqual(series['ID'], instance['ParentSeries']) | |
| 206 | |
| 207 self.assertEqual(json.dumps(DoGet(_REMOTE, '/instances/%s/attachments/dicom-as-json/data' % instance['ID'])), | |
| 208 json.dumps(DoGet(_REMOTE, '/instances/%s/tags' % instance['ID']))) | |
| 209 | |
| 210 | |
| 211 r = DoDelete(_REMOTE, "/studies/%s" % brainixStudy)['RemainingAncestor'] | |
| 212 self.assertEqual(1, len(DoGet(_REMOTE, '/patients'))) | |
| 213 self.assertEqual(1, len(DoGet(_REMOTE, '/studies'))) | |
| 214 self.assertEqual(2, len(DoGet(_REMOTE, '/series'))) | |
| 215 self.assertEqual(50, len(DoGet(_REMOTE, '/instances'))) | |
| 216 self.assertEqual(None, r) | |
| 217 | |
| 218 r = DoDelete(_REMOTE, "/series/%s" % kneeT2)['RemainingAncestor'] | |
| 219 self.assertEqual(1, len(DoGet(_REMOTE, '/patients'))) | |
| 220 self.assertEqual(1, len(DoGet(_REMOTE, '/studies'))) | |
| 221 self.assertEqual(1, len(DoGet(_REMOTE, '/series'))) | |
| 222 self.assertEqual(24, len(DoGet(_REMOTE, '/instances'))) | |
| 223 self.assertEqual('Study', r['Type']) | |
| 224 self.assertEqual(kneeStudy, r['ID']) | |
| 225 | |
| 226 r = DoDelete(_REMOTE, "/instances/%s" % DoGet(_REMOTE, '/instances')[0])['RemainingAncestor'] | |
| 227 self.assertEqual(1, len(DoGet(_REMOTE, '/patients'))) | |
| 228 self.assertEqual(1, len(DoGet(_REMOTE, '/studies'))) | |
| 229 self.assertEqual(1, len(DoGet(_REMOTE, '/series'))) | |
| 230 self.assertEqual(23, len(DoGet(_REMOTE, '/instances'))) | |
| 231 self.assertEqual('Series', r['Type']) | |
| 232 self.assertEqual(kneeT1, r['ID']) | |
| 233 | |
| 234 r = DoDelete(_REMOTE, "/patients/%s" % kneePatient)['RemainingAncestor'] | |
| 235 self.assertEqual(0, len(DoGet(_REMOTE, '/patients'))) | |
| 236 self.assertEqual(0, len(DoGet(_REMOTE, '/studies'))) | |
| 237 self.assertEqual(0, len(DoGet(_REMOTE, '/series'))) | |
| 238 self.assertEqual(0, len(DoGet(_REMOTE, '/instances'))) | |
| 239 self.assertEqual(None, r) | |
| 240 | |
| 241 DropOrthanc(_REMOTE) | |
| 242 self.assertEqual('0', DoGet(_REMOTE, '/statistics')['TotalDiskSize']) | |
| 243 self.assertEqual('0', DoGet(_REMOTE, '/statistics')['TotalUncompressedSize']) | |
| 7 | 244 |
| 245 | |
| 246 def test_multi_frame(self): | |
| 247 i = UploadInstance(_REMOTE, 'Multiframe.dcm')['ID'] | |
| 248 self.assertEqual(76, len(DoGet(_REMOTE, '/instances/%s/frames' % i))) | |
| 249 | |
| 250 im = GetImage(_REMOTE, '/instances/%s/frames/0/preview' % i) | |
| 251 self.assertEqual("L", im.mode) | |
| 252 self.assertEqual(512, im.size[0]) | |
| 253 self.assertEqual(512, im.size[1]) | |
| 254 | |
| 255 DoGet(_REMOTE, '/instances/%s/frames/0/image-uint8' % i) | |
| 256 DoGet(_REMOTE, '/instances/%s/frames/0/image-uint16' % i) | |
| 257 DoGet(_REMOTE, '/instances/%s/frames/75/preview' % i) | |
| 258 self.assertRaises(Exception, lambda: DoGet(_REMOTE, '/instances/%s/frames/aaa/preview' % i)) | |
| 259 self.assertRaises(Exception, lambda: DoGet(_REMOTE, '/instances/%s/frames/76/preview' % i)) | |
| 260 | |
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261 |
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262 def test_changes(self): |
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263 # Check emptiness |
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264 c = DoGet(_REMOTE, '/changes') |
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265 self.assertEqual(0, len(c['Changes'])) |
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266 self.assertEqual(0, c['Last']) |
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267 self.assertTrue(c['Done']) |
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268 c = DoGet(_REMOTE, '/changes?last') |
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269 self.assertEqual(0, len(c['Changes'])) |
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270 self.assertEqual(0, c['Last']) |
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271 self.assertTrue(c['Done']) |
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272 |
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273 # Add 1 instance |
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274 i = UploadInstance(_REMOTE, 'Brainix/Flair/IM-0001-0001.dcm')['ID'] |
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275 c = DoGet(_REMOTE, '/changes') |
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276 begin = c['Last'] |
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277 self.assertEqual(4, len(c['Changes'])) |
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278 self.assertTrue(c['Done']) |
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279 self.assertEqual(c['Changes'][-1]['Seq'], c['Last']) |
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280 |
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281 c = DoGet(_REMOTE, '/changes?last') |
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282 self.assertEqual(1, len(c['Changes'])) |
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283 self.assertEqual(begin, c['Last']) |
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284 self.assertTrue(c['Done']) |
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285 c = DoGet(_REMOTE, '/changes?limit=1&since=' + str(begin - 1)) |
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286 self.assertEqual(1, len(c['Changes'])) |
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287 self.assertEqual(begin, c['Last']) |
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288 self.assertTrue(c['Done']) |
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289 c = DoGet(_REMOTE, '/changes?limit=1&since=' + str(begin - 2)) |
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290 self.assertEqual(1, len(c['Changes'])) |
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291 self.assertEqual(begin - 1, c['Last']) |
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292 self.assertFalse(c['Done']) |
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293 c = DoGet(_REMOTE, '/changes?limit=1&since=' + str(begin - 3)) |
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294 self.assertEqual(1, len(c['Changes'])) |
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295 self.assertEqual(begin - 2, c['Last']) |
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296 self.assertFalse(c['Done']) |
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297 |
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298 UploadFolder(_REMOTE, 'Knee/T1') |
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299 UploadFolder(_REMOTE, 'Knee/T2') |
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300 since = begin |
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301 countPatients = 0 |
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302 countStudies = 0 |
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303 countSeries = 0 |
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304 countInstances = 0 |
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305 completed = 0 |
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306 while True: |
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307 c = DoGet(_REMOTE, '/changes', { 'since' : since, 'limit' : 3 }) |
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308 since = c['Last'] |
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309 for i in c['Changes']: |
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310 if i['ResourceType'] == 'Instance': |
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311 countInstances += 1 |
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312 if i['ResourceType'] == 'Patient': |
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313 countPatients += 1 |
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314 if i['ResourceType'] == 'Study': |
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315 countStudies += 1 |
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316 if i['ResourceType'] == 'Series': |
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317 countSeries += 1 |
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318 if i['ChangeType'] == 'NewInstance': |
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319 countInstances += 1 |
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320 if i['ChangeType'] == 'NewPatient': |
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321 countPatients += 1 |
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322 if i['ChangeType'] == 'NewStudy': |
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323 countStudies += 1 |
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324 if i['ChangeType'] == 'NewSeries': |
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325 countSeries += 1 |
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326 if i['ChangeType'] == 'CompletedSeries': |
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327 completed += 1 |
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328 self.assertTrue('ID' in i) |
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329 self.assertTrue('Path' in i) |
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330 self.assertTrue('Seq' in i) |
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331 if c['Done']: |
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332 break |
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333 |
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334 self.assertEqual(2 * 50, countInstances) |
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335 self.assertEqual(2 * 1, countPatients) |
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336 self.assertEqual(2 * 1, countStudies) |
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337 self.assertEqual(2 * 2, countSeries) |
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338 self.assertEqual(0, completed) |
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339 |
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340 |
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341 def test_archive(self): |
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342 UploadInstance(_REMOTE, 'Knee/T1/IM-0001-0001.dcm') |
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343 UploadInstance(_REMOTE, 'Knee/T2/IM-0001-0001.dcm') |
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344 |
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345 z = GetArchive(_REMOTE, '/patients/%s/archive' % DoGet(_REMOTE, '/patients')[0]) |
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346 self.assertEqual(2, len(z.namelist())) |
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347 |
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348 z = GetArchive(_REMOTE, '/studies/%s/archive' % DoGet(_REMOTE, '/studies')[0]) |
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349 self.assertEqual(2, len(z.namelist())) |
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350 |
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351 z = GetArchive(_REMOTE, '/series/%s/archive' % DoGet(_REMOTE, '/series')[0]) |
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352 self.assertEqual(1, len(z.namelist())) |
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353 |
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354 UploadInstance(_REMOTE, 'Brainix/Flair/IM-0001-0001.dcm') |
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355 |
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356 z = GetArchive(_REMOTE, '/patients/%s/archive' % DoGet(_REMOTE, '/patients')[0]) |
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357 self.assertEqual(2, len(z.namelist())) |
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358 |
|
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359 |
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360 def test_media_archive(self): |
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361 UploadInstance(_REMOTE, 'Knee/T1/IM-0001-0001.dcm') |
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362 UploadInstance(_REMOTE, 'Knee/T2/IM-0001-0001.dcm') |
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363 |
|
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364 z = GetArchive(_REMOTE, '/patients/%s/media' % DoGet(_REMOTE, '/patients')[0]) |
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365 self.assertEqual(3, len(z.namelist())) |
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366 self.assertTrue('IMAGES/IM0' in z.namelist()) |
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367 self.assertTrue('IMAGES/IM1' in z.namelist()) |
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368 self.assertTrue('DICOMDIR' in z.namelist()) |
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369 |
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370 try: |
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371 os.remove('/tmp/DICOMDIR') |
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372 except: |
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373 # The file does not exist |
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374 pass |
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375 |
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376 z.extract('DICOMDIR', '/tmp') |
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377 a = subprocess.check_output([ 'dciodvfy', '/tmp/DICOMDIR' ], |
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378 stderr = subprocess.STDOUT).split('\n') |
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379 self.assertEqual(3, len(a)) |
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380 self.assertTrue(a[0].startswith('Warning')) |
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381 self.assertEqual('BasicDirectory', a[1]) |
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382 self.assertEqual('', a[2]) |
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383 |
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384 a = subprocess.check_output([ 'dcentvfy', '/tmp/DICOMDIR' ], |
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385 stderr = subprocess.STDOUT).split('\n') |
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386 self.assertEqual(1, len(a)) |
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387 self.assertEqual('', a[0]) |
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388 |
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389 a = subprocess.check_output([ 'dcm2xml', '/tmp/DICOMDIR' ]) |
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390 self.assertTrue(re.search('1.3.46.670589.11.17521.5.0.3124.2008081908590448738', a) != None) |
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391 self.assertTrue(re.search('1.3.46.670589.11.17521.5.0.3124.2008081909113806560', a) != None) |
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392 |
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393 os.remove('/tmp/DICOMDIR') |
| 10 | 394 |
| 395 | |
| 396 def test_protection(self): | |
| 397 UploadInstance(_REMOTE, 'Knee/T1/IM-0001-0001.dcm') | |
| 398 UploadInstance(_REMOTE, 'Brainix/Flair/IM-0001-0001.dcm') | |
| 399 self.assertEqual(2, len(DoGet(_REMOTE, '/patients'))) | |
| 400 a = DoGet(_REMOTE, '/patients')[0] | |
| 401 b = DoGet(_REMOTE, '/patients')[1] | |
| 402 self.assertEqual(0, DoGet(_REMOTE, '/patients/%s/protected' % a)) | |
| 403 DoPut(_REMOTE, '/patients/%s/protected' % a, '0', 'text/plain') | |
| 404 self.assertEqual(0, DoGet(_REMOTE, '/patients/%s/protected' % a)) | |
| 405 DoPut(_REMOTE, '/patients/%s/protected' % a, '1', 'text/plain') | |
| 406 self.assertEqual(1, DoGet(_REMOTE, '/patients/%s/protected' % a)) | |
| 407 DoPut(_REMOTE, '/patients/%s/protected' % a, '0', 'text/plain') | |
| 408 self.assertEqual(0, DoGet(_REMOTE, '/patients/%s/protected' % a)) | |
| 409 | |
| 410 | |
| 12 | 411 def test_raw_tags(self): |
| 10 | 412 i = UploadInstance(_REMOTE, 'PrivateTags.dcm')['ID'] |
| 413 | |
| 414 dicom = DoGet(_REMOTE, '/instances/%s/file' % i) | |
| 415 self.assertEqual('1a7c56cb02d6e742cc9c856a8ac182e3', ComputeMD5(dicom)) | |
| 416 | |
| 417 s = '/instances/%s/content/' % i | |
| 418 | |
| 419 self.assertEqual('LOGIQBOOK', DoGet(_REMOTE, s + '0008-1010').strip()) | |
| 420 self.assertRaises(Exception, lambda: DoGet(_REMOTE, s + '0008-1011')) | |
| 421 | |
| 422 self.assertEqual('Abdomen', DoGet(_REMOTE, s + '7fe1-1001/0/7fe1-1008/0/7fe1-1057').strip()) | |
| 423 self.assertEqual('cla_3c', DoGet(_REMOTE, s + '7fe1-1001/0/7fe1-1008/8/7fe1-1057').strip()) | |
| 424 | |
| 425 UploadInstance(_REMOTE, 'Brainix/Epi/IM-0001-0001.dcm') | |
| 426 UploadInstance(_REMOTE, 'Brainix/Flair/IM-0001-0001.dcm') | |
| 427 UploadInstance(_REMOTE, 'Knee/T1/IM-0001-0001.dcm') | |
| 428 UploadInstance(_REMOTE, 'Knee/T2/IM-0001-0001.dcm') | |
| 429 | |
| 430 for i in DoGet(_REMOTE, '/instances'): | |
| 431 aid = DoGet(_REMOTE, '/instances/%s' % i)['MainDicomTags']['SOPInstanceUID'] | |
| 432 self.assertEqual(aid, DoGet(_REMOTE, '/instances/%s/content/0008-0018' % i).replace(chr(0), '')) | |
| 433 | |
| 434 | |
| 435 def test_raw_tags_mdn(self): | |
| 436 # Bug reported by Cyril Paulus | |
| 437 i = UploadInstance(_REMOTE, 'PrivateMDNTags.dcm')['ID'] | |
| 438 self.assertAlmostEqual(0.000027, DoGet(_REMOTE, '/instances/%s/content/7053-1000' % i)) | |
| 439 | |
| 440 | |
| 441 def test_modify_instance(self): | |
| 442 i = UploadInstance(_REMOTE, 'PrivateTags.dcm')['ID'] | |
| 443 modified = DoPost(_REMOTE, '/instances/%s/modify' % i, | |
| 444 json.dumps({ | |
| 445 "Replace" : { | |
| 446 "PatientName" : "hello", | |
| 447 #"PatientID" : "world" | |
| 448 }, | |
| 449 "Remove" : [ "StationName" ], | |
| 450 "RemovePrivateTags" : None | |
| 451 }), | |
| 452 'application/json') | |
| 453 j = DoPost(_REMOTE, '/instances', modified, 'application/dicom')['ID'] | |
| 454 | |
| 455 self.assertNotEqual('hello', DoGet(_REMOTE, '/instances/%s/content/0010-0010' % i).strip()) | |
| 456 #self.assertNotEqual('world', DoGet(_REMOTE, '/instances/%s/content/0010-0020' % i).strip()) | |
| 457 self.assertEqual('LOGIQBOOK', DoGet(_REMOTE, '/instances/%s/content/0008-1010' % i).strip()) | |
| 458 DoGet(_REMOTE, '/instances/%s/content/6003-1010' % i) # Some private tag | |
| 459 | |
| 460 self.assertEqual('hello', DoGet(_REMOTE, '/instances/%s/content/0010-0010' % j).strip()) | |
| 461 #self.assertEqual('world', DoGet(_REMOTE, '/instances/%s/content/0010-0020' % j).strip()) | |
| 462 self.assertRaises(Exception, lambda: DoGet(_REMOTE, '/instances/%s/content/0008-1010' % j)) | |
| 463 self.assertRaises(Exception, lambda: DoGet(_REMOTE, '/instances/%s/content/6003-1010' % j)) | |
| 464 | |
| 465 | |
| 466 def test_modify_series(self): | |
| 467 # Upload 4 images from the same series | |
| 468 for i in range(4): | |
| 469 UploadInstance(_REMOTE, 'Brainix/Epi/IM-0001-000%d.dcm' % (i + 1)) | |
| 470 | |
| 471 origSeries = DoGet(_REMOTE, '/series')[0] | |
| 472 newSeries = DoPost(_REMOTE, '/series/%s/modify' % origSeries, | |
| 473 '{"Replace":{"PatientName":"Jodogne"}}', | |
| 474 'application/json')['ID'] | |
| 475 | |
| 476 self.assertEqual(origSeries, DoGet(_REMOTE, '/series/%s' % newSeries)['ModifiedFrom']) | |
| 477 instances = DoGet(_REMOTE, '/series/%s' % newSeries)['Instances'] | |
| 478 self.assertEqual(4, len(instances)) | |
| 479 for i in instances: | |
| 480 j = DoGet(_REMOTE, '/instances/%s' % i)['ModifiedFrom'] | |
| 481 self.assertEqual(newSeries, DoGet(_REMOTE, '/instances/%s' % i)['ParentSeries']) | |
| 482 self.assertEqual(origSeries, DoGet(_REMOTE, '/instances/%s' % j)['ParentSeries']) | |
| 483 | |
| 484 self.assertEqual('Jodogne', DoGet(_REMOTE, '/instances/%s/content/0010-0010' % i).strip()) | |
| 485 self.assertNotEqual('Jodogne', DoGet(_REMOTE, '/instances/%s/content/0010-0010' % j).strip()) | |
| 486 | |
| 487 | |
| 488 def test_modify_study(self): | |
| 489 # Upload 4 images from the 2 series of the same study | |
| 490 for i in range(4): | |
| 491 UploadInstance(_REMOTE, 'Brainix/Flair/IM-0001-000%d.dcm' % (i + 1)) | |
| 492 UploadInstance(_REMOTE, 'Brainix/Epi/IM-0001-000%d.dcm' % (i + 1)) | |
| 493 | |
| 494 origStudy = DoGet(_REMOTE, '/studies')[0] | |
| 495 newStudy = DoPost(_REMOTE, '/studies/%s/modify' % origStudy, | |
| 496 '{"Replace":{"PatientName":"Jodogne"}}', | |
| 497 'application/json')['ID'] | |
| 498 | |
| 499 self.assertEqual(origStudy, DoGet(_REMOTE, '/studies/%s' % newStudy)['ModifiedFrom']) | |
| 500 series = DoGet(_REMOTE, '/studies/%s' % newStudy)['Series'] | |
| 501 self.assertEqual(2, len(series)) | |
| 502 for s in series: | |
| 503 ss = DoGet(_REMOTE, '/series/%s' % s)['ModifiedFrom'] | |
| 504 self.assertEqual(newStudy, DoGet(_REMOTE, '/series/%s' % s)['ParentStudy']) | |
| 505 self.assertEqual(origStudy, DoGet(_REMOTE, '/series/%s' % ss)['ParentStudy']) | |
| 506 | |
| 507 instances = DoGet(_REMOTE, '/series/%s' % s)['Instances'] | |
| 508 for i in instances: | |
| 509 j = DoGet(_REMOTE, '/instances/%s' % i)['ModifiedFrom'] | |
| 510 self.assertEqual(s, DoGet(_REMOTE, '/instances/%s' % i)['ParentSeries']) | |
| 511 self.assertEqual(ss, DoGet(_REMOTE, '/instances/%s' % j)['ParentSeries']) | |
| 512 | |
| 513 self.assertEqual('Jodogne', DoGet(_REMOTE, '/instances/%s/content/0010-0010' % i).strip()) | |
| 514 self.assertNotEqual('Jodogne', DoGet(_REMOTE, '/instances/%s/content/0010-0010' % j).strip()) | |
| 515 | |
| 516 | |
| 517 def test_anonymize_series(self): | |
| 518 # Upload 4 images from the same series | |
| 519 for i in range(4): | |
| 520 UploadInstance(_REMOTE, 'Brainix/Epi/IM-0001-000%d.dcm' % (i + 1)) | |
| 521 | |
| 522 origSeries = DoGet(_REMOTE, '/series')[0] | |
| 523 newSeries = DoPost(_REMOTE, '/series/%s/anonymize' % origSeries, | |
| 524 '{}', | |
| 525 'application/json')['ID'] | |
| 526 | |
| 527 self.assertEqual(origSeries, DoGet(_REMOTE, '/series/%s' % newSeries)['AnonymizedFrom']) | |
| 528 instances = DoGet(_REMOTE, '/series/%s' % newSeries)['Instances'] | |
| 529 self.assertEqual(4, len(instances)) | |
| 530 for i in instances: | |
| 531 j = DoGet(_REMOTE, '/instances/%s' % i)['AnonymizedFrom'] | |
| 532 self.assertEqual(newSeries, DoGet(_REMOTE, '/instances/%s' % i)['ParentSeries']) | |
| 533 self.assertEqual(origSeries, DoGet(_REMOTE, '/instances/%s' % j)['ParentSeries']) | |
| 534 | |
| 535 DoGet(_REMOTE, '/instances/%s/content/0008-1010' % j) | |
| 536 self.assertRaises(Exception, lambda: DoGet(_REMOTE, '/instances/%s/content/0008-1010' % i)) | |
| 537 | |
| 538 | |
| 539 def test_anonymize_study(self): | |
| 540 # Upload 4 images from the 2 series of the same study | |
| 541 for i in range(4): | |
| 542 UploadInstance(_REMOTE, 'Brainix/Flair/IM-0001-000%d.dcm' % (i + 1)) | |
| 543 UploadInstance(_REMOTE, 'Brainix/Epi/IM-0001-000%d.dcm' % (i + 1)) | |
| 544 | |
| 545 origStudy = DoGet(_REMOTE, '/studies')[0] | |
| 546 newStudy = DoPost(_REMOTE,'/studies/%s/anonymize' % origStudy, | |
| 547 '{"Replace":{"PatientName":"Jodogne"}}', | |
| 548 'application/json')['ID'] | |
| 549 | |
| 550 self.assertEqual(origStudy, DoGet(_REMOTE, '/studies/%s' % newStudy)['AnonymizedFrom']) | |
| 551 series = DoGet(_REMOTE, '/studies/%s' % newStudy)['Series'] | |
| 552 self.assertEqual(2, len(series)) | |
| 553 for s in series: | |
| 554 ss = DoGet(_REMOTE, '/series/%s' % s)['AnonymizedFrom'] | |
| 555 self.assertEqual(newStudy, DoGet(_REMOTE, '/series/%s' % s)['ParentStudy']) | |
| 556 self.assertEqual(origStudy, DoGet(_REMOTE, '/series/%s' % ss)['ParentStudy']) | |
| 557 | |
| 558 instances = DoGet(_REMOTE, '/series/%s' % s)['Instances'] | |
| 559 for i in instances: | |
| 560 j = DoGet(_REMOTE, '/instances/%s' % i)['AnonymizedFrom'] | |
| 561 self.assertEqual(s, DoGet(_REMOTE, '/instances/%s' % i)['ParentSeries']) | |
| 562 self.assertEqual(ss, DoGet(_REMOTE, '/instances/%s' % j)['ParentSeries']) | |
| 563 | |
| 564 self.assertEqual('Jodogne', DoGet(_REMOTE, '/instances/%s/content/0010-0010' % i).strip()) | |
| 565 self.assertNotEqual('Jodogne', DoGet(_REMOTE, '/instances/%s/content/0010-0010' % j).strip()) | |
| 11 | 566 |
| 567 | |
| 568 | |
| 569 def test_storescu(self): | |
| 570 # Check emptiness | |
| 571 e = DoGet(_REMOTE, '/exports') | |
| 572 self.assertEqual(0, len(e['Exports'])) | |
| 573 self.assertEqual(0, e['Last']) | |
| 574 self.assertTrue(e['Done']) | |
| 575 e = DoGet(_REMOTE, '/exports?last') | |
| 576 self.assertEqual(0, len(e['Exports'])) | |
| 577 self.assertEqual(0, e['Last']) | |
| 578 self.assertTrue(e['Done']) | |
| 579 | |
| 580 # Add 1 instance | |
| 581 i = UploadInstance(_REMOTE, 'DummyCT.dcm')['ID'] | |
| 582 self.assertEqual(0, len(DoGet(_LOCAL, '/patients'))) | |
| 583 | |
| 584 # Export the instance | |
| 585 j = DoPost(_REMOTE, '/modalities/orthanctest/store', str(i), 'text/plain') # instance | |
| 586 self.assertEqual(1, len(DoGet(_LOCAL, '/patients'))) | |
| 587 self.assertEqual(1, len(DoGet(_LOCAL, '/studies'))) | |
| 588 self.assertEqual(1, len(DoGet(_LOCAL, '/series'))) | |
| 589 self.assertEqual(1, len(DoGet(_LOCAL, '/instances'))) | |
| 590 | |
| 591 e = DoGet(_REMOTE, '/exports') | |
| 592 self.assertEqual(1, len(e['Exports'])) | |
| 593 self.assertTrue(e['Done']) | |
| 594 self.assertEqual(e['Exports'][-1]['Seq'], e['Last']) | |
| 595 e = DoGet(_REMOTE, '/exports?limit=1') | |
| 596 self.assertEqual(1, len(e['Exports'])) | |
| 597 self.assertTrue(e['Done']) | |
| 598 self.assertEqual(e['Exports'][-1]['Seq'], e['Last']) | |
| 599 e = DoGet(_REMOTE, '/exports?last') | |
| 600 self.assertEqual(1, len(e['Exports'])) | |
| 601 self.assertTrue(e['Done']) | |
| 602 self.assertEqual(e['Exports'][-1]['Seq'], e['Last']) | |
| 603 seqInstance = e['Last'] | |
| 604 | |
| 605 # Export the series | |
| 606 j = DoPost(_REMOTE, '/modalities/orthanctest/store', 'f2635388-f01d497a-15f7c06b-ad7dba06-c4c599fe', 'text/plain') | |
| 607 | |
| 608 e = DoGet(_REMOTE, '/exports') | |
| 609 self.assertEqual(2, len(e['Exports'])) | |
| 610 self.assertTrue(e['Done']) | |
| 611 self.assertEqual(e['Exports'][-1]['Seq'], e['Last']) | |
| 612 seqSeries = e['Last'] | |
| 613 self.assertNotEqual(seqInstance, seqSeries) | |
| 614 e = DoGet(_REMOTE, '/exports?limit=1&since=0') | |
| 615 self.assertEqual(1, len(e['Exports'])) | |
| 616 self.assertFalse(e['Done']) | |
| 617 self.assertEqual(e['Exports'][-1]['Seq'], seqInstance) | |
| 618 e = DoGet(_REMOTE, '/exports?limit=1&since=' + str(seqInstance)) | |
| 619 self.assertEqual(1, len(e['Exports'])) | |
| 620 self.assertTrue(e['Done']) | |
| 621 self.assertEqual(e['Exports'][-1]['Seq'], seqSeries) | |
| 622 e = DoGet(_REMOTE, '/exports?last') | |
| 623 self.assertEqual(1, len(e['Exports'])) | |
| 624 self.assertTrue(e['Done']) | |
| 625 self.assertEqual(e['Exports'][-1]['Seq'], seqSeries) | |
| 626 | |
| 627 # Export the study | |
| 628 j = DoPost(_REMOTE, '/modalities/orthanctest/store', 'b9c08539-26f93bde-c81ab0d7-bffaf2cb-a4d0bdd0', 'text/plain') | |
| 629 seqStudy = DoGet(_REMOTE, '/exports')['Last'] | |
| 630 | |
| 631 # Export the patient | |
| 632 j = DoPost(_REMOTE, '/modalities/orthanctest/store', '6816cb19-844d5aee-85245eba-28e841e6-2414fae2', 'text/plain') | |
| 633 self.assertEqual(1, len(DoGet(_LOCAL, '/patients'))) | |
| 634 self.assertEqual(1, len(DoGet(_LOCAL, '/studies'))) | |
| 635 self.assertEqual(1, len(DoGet(_LOCAL, '/series'))) | |
| 636 self.assertEqual(1, len(DoGet(_LOCAL, '/instances'))) | |
| 637 | |
| 638 e = DoGet(_REMOTE, '/exports') | |
| 639 self.assertEqual(4, len(e['Exports'])) | |
| 640 self.assertTrue(e['Done']) | |
| 641 self.assertEqual(e['Exports'][-1]['Seq'], e['Last']) | |
| 642 seqPatient = e['Last'] | |
| 643 self.assertNotEqual(seqInstance, seqSeries) | |
| 644 self.assertNotEqual(seqSeries, seqStudy) | |
| 645 self.assertNotEqual(seqStudy, seqPatient) | |
| 646 self.assertTrue(seqInstance < seqSeries) | |
| 647 self.assertTrue(seqSeries < seqStudy) | |
| 648 self.assertTrue(seqStudy < seqPatient) | |
| 649 e = DoGet(_REMOTE, '/exports?limit=1&since=0') | |
| 650 self.assertEqual(1, len(e['Exports'])) | |
| 651 self.assertFalse(e['Done']) | |
| 652 self.assertEqual(e['Exports'][-1]['Seq'], seqInstance) | |
| 653 e = DoGet(_REMOTE, '/exports?limit=1&since=' + str(seqInstance)) | |
| 654 self.assertEqual(1, len(e['Exports'])) | |
| 655 self.assertFalse(e['Done']) | |
| 656 self.assertEqual(e['Exports'][-1]['Seq'], seqSeries) | |
| 657 e = DoGet(_REMOTE, '/exports?limit=1&since=' + str(seqSeries)) | |
| 658 self.assertEqual(1, len(e['Exports'])) | |
| 659 self.assertFalse(e['Done']) | |
| 660 self.assertEqual(e['Exports'][-1]['Seq'], seqStudy) | |
| 661 e = DoGet(_REMOTE, '/exports?limit=1&since=' + str(seqStudy)) | |
| 662 self.assertEqual(1, len(e['Exports'])) | |
| 663 self.assertTrue(e['Done']) | |
| 664 self.assertEqual(e['Exports'][-1]['Seq'], seqPatient) | |
| 665 e = DoGet(_REMOTE, '/exports?last') | |
| 666 self.assertEqual(1, len(e['Exports'])) | |
| 667 self.assertTrue(e['Done']) | |
| 668 self.assertEqual(e['Exports'][-1]['Seq'], seqPatient) | |
| 669 | |
| 670 | |
| 671 # Check the content of the logged information | |
| 672 e = DoGet(_REMOTE, '/exports')['Exports'] | |
| 673 | |
| 674 if 'PatientID' in e[0]: | |
| 675 # Since Orthanc 0.8.6 | |
| 676 patient = 'PatientID' | |
| 677 study = 'StudyInstanceUID' | |
| 678 series = 'SeriesInstanceUID' | |
| 679 instance = 'SOPInstanceUID' | |
| 680 else: | |
| 681 # Up to Orthanc 0.8.5 | |
| 682 patient = 'PatientId' | |
| 683 study = 'StudyInstanceUid' | |
| 684 series = 'SeriesInstanceUid' | |
| 685 instance = 'SopInstanceUid' | |
| 686 | |
| 687 for k in range(4): | |
| 688 self.assertTrue('Date' in e[k]) | |
| 689 self.assertTrue('Seq' in e[k]) | |
| 690 self.assertEqual('orthanctest', e[k]['RemoteModality']) | |
| 691 | |
| 692 self.assertEqual(10, len(e[0])) | |
| 693 self.assertEqual('Instance', e[0]['ResourceType']) | |
| 694 self.assertEqual('66a662ce-7430e543-bad44d47-0dc5a943-ec7a538d', e[0]['ID']) | |
| 695 self.assertEqual('/instances/66a662ce-7430e543-bad44d47-0dc5a943-ec7a538d', e[0]['Path']) | |
| 696 self.assertEqual('1.2.840.113619.2.176.2025.1499492.7040.1171286242.109', e[0][instance]) | |
| 697 self.assertEqual('1.2.840.113619.2.176.2025.1499492.7391.1171285944.394', e[0][series]) | |
| 698 self.assertEqual('1.2.840.113619.2.176.2025.1499492.7391.1171285944.390', e[0][study]) | |
| 699 self.assertEqual('ozp00SjY2xG', e[0][patient]) | |
| 700 | |
| 701 self.assertEqual(9, len(e[1])) | |
| 702 self.assertEqual('Series', e[1]['ResourceType']) | |
| 703 self.assertEqual('f2635388-f01d497a-15f7c06b-ad7dba06-c4c599fe', e[1]['ID']) | |
| 704 self.assertEqual('/series/f2635388-f01d497a-15f7c06b-ad7dba06-c4c599fe', e[1]['Path']) | |
| 705 self.assertEqual('1.2.840.113619.2.176.2025.1499492.7391.1171285944.394', e[1][series]) | |
| 706 self.assertEqual('1.2.840.113619.2.176.2025.1499492.7391.1171285944.390', e[1][study]) | |
| 707 self.assertEqual('ozp00SjY2xG', e[1][patient]) | |
| 708 | |
| 709 self.assertEqual(8, len(e[2])) | |
| 710 self.assertEqual('Study', e[2]['ResourceType']) | |
| 711 self.assertEqual('b9c08539-26f93bde-c81ab0d7-bffaf2cb-a4d0bdd0', e[2]['ID']) | |
| 712 self.assertEqual('/studies/b9c08539-26f93bde-c81ab0d7-bffaf2cb-a4d0bdd0', e[2]['Path']) | |
| 713 self.assertEqual('1.2.840.113619.2.176.2025.1499492.7391.1171285944.390', e[2][study]) | |
| 714 self.assertEqual('ozp00SjY2xG', e[2][patient]) | |
| 715 | |
| 716 self.assertEqual(7, len(e[3])) | |
| 717 self.assertEqual('Patient', e[3]['ResourceType']) | |
| 718 self.assertEqual('6816cb19-844d5aee-85245eba-28e841e6-2414fae2', e[3]['ID']) | |
| 719 self.assertEqual('/patients/6816cb19-844d5aee-85245eba-28e841e6-2414fae2', e[3]['Path']) | |
| 720 self.assertEqual('ozp00SjY2xG', e[3][patient]) | |
| 721 | |
| 722 DropOrthanc(_REMOTE) | |
| 723 self.assertEqual(0, len(DoGet(_REMOTE, '/exports')['Exports'])) | |
| 724 | |
| 725 | |
| 726 def test_store_peer(self): | |
| 727 self.assertEqual(0, len(DoGet(_LOCAL, '/exports')['Exports'])) | |
| 728 self.assertEqual(0, len(DoGet(_REMOTE, '/exports')['Exports'])) | |
| 729 | |
| 730 i = UploadInstance(_REMOTE, 'DummyCT.dcm')['ID'] | |
| 731 self.assertEqual(0, len(DoGet(_LOCAL, '/patients'))) | |
| 732 self.assertEqual(1, len(DoGet(_REMOTE, '/patients'))) | |
| 733 | |
| 734 j = DoPost(_REMOTE, '/peers/peer/store', str(i), 'text/plain') | |
| 735 self.assertEqual(1, len(DoGet(_LOCAL, '/patients'))) | |
| 736 self.assertEqual(1, len(DoGet(_REMOTE, '/patients'))) | |
| 737 | |
| 738 self.assertEqual(1, len(DoGet(_REMOTE, '/exports')['Exports'])) | |
| 739 | |
| 740 DropOrthanc(_REMOTE) | |
| 741 self.assertEqual(0, len(DoGet(_REMOTE, '/exports')['Exports'])) | |
| 742 | |
| 743 | |
| 744 def test_bulk_storescu(self): | |
| 745 self.assertEqual(0, len(DoGet(_LOCAL, '/patients'))) | |
| 746 | |
| 747 a = UploadInstance(_REMOTE, 'Knee/T1/IM-0001-0001.dcm') | |
| 748 b = UploadInstance(_REMOTE, 'Knee/T2/IM-0001-0001.dcm') | |
| 749 | |
| 750 j = DoPost(_REMOTE, '/modalities/orthanctest/store', [ a['ID'], b['ID'] ], 'application/json') | |
| 751 self.assertEqual(2, len(DoGet(_LOCAL, '/instances'))) | |
| 752 | |
| 753 DropOrthanc(_LOCAL) | |
| 754 | |
| 755 # Send using patient's UUID | |
| 756 self.assertEqual(0, len(DoGet(_LOCAL, '/instances'))) | |
| 757 j = DoPost(_REMOTE, '/modalities/orthanctest/store', | |
| 758 [ 'ca29faea-b6a0e17f-067743a1-8b778011-a48b2a17' ], 'application/json') | |
| 759 self.assertEqual(2, len(DoGet(_LOCAL, '/instances'))) | |
| 760 | |
| 761 | |
| 762 def test_color(self): | |
| 763 i = UploadInstance(_REMOTE, 'ColorTestMalaterre.dcm')['ID'] | |
| 764 im = GetImage(_REMOTE, '/instances/%s/preview' % i) | |
| 765 self.assertEqual("RGB", im.mode) | |
| 766 self.assertEqual(41, im.size[0]) | |
| 767 self.assertEqual(41, im.size[1]) | |
| 768 | |
| 769 # http://effbot.org/zone/pil-comparing-images.htm | |
| 13 | 770 truth = Image.open(GetDatabasePath('ColorTestMalaterre.png')) |
| 11 | 771 self.assertTrue(ImageChops.difference(im, truth).getbbox() is None) |
| 772 | |
| 773 | |
| 12 | 774 def test_faking_ruby_put(self): |
| 775 UploadInstance(_REMOTE, 'Knee/T1/IM-0001-0001.dcm') | |
| 776 UploadInstance(_REMOTE, 'Brainix/Flair/IM-0001-0001.dcm') | |
| 777 self.assertEqual(2, len(DoGet(_REMOTE, '/patients'))) | |
| 778 a = DoGet(_REMOTE, '/patients')[0] | |
| 779 b = DoGet(_REMOTE, '/patients')[1] | |
| 780 self.assertEqual(0, DoGet(_REMOTE, '/patients/%s/protected' % a)) | |
| 781 DoGet(_REMOTE, '/patients/%s/protected' % a, data = { '_method' : 'PUT' }, body = '0') | |
| 782 self.assertEqual(0, DoGet(_REMOTE, '/patients/%s/protected' % a)) | |
| 783 DoGet(_REMOTE, '/patients/%s/protected' % a, data = { '_method' : 'PUT' }, body = '1') | |
| 784 self.assertEqual(1, DoGet(_REMOTE, '/patients/%s/protected' % a)) | |
| 785 DoGet(_REMOTE, '/patients/%s/protected' % a, data = { '_method' : 'PUT' }, body = '0') | |
| 786 self.assertEqual(0, DoGet(_REMOTE, '/patients/%s/protected' % a)) | |
| 787 | |
| 788 | |
| 789 def test_faking_ruby_delete(self): | |
| 790 UploadInstance(_REMOTE, 'Knee/T1/IM-0001-0001.dcm') | |
| 791 UploadInstance(_REMOTE, 'Brainix/Flair/IM-0001-0001.dcm') | |
| 792 self.assertEqual(2, len(DoGet(_REMOTE, '/patients'))) | |
| 793 a = DoGet(_REMOTE, '/patients')[0] | |
| 794 b = DoGet(_REMOTE, '/patients')[1] | |
| 795 DoGet(_REMOTE, '/patients/%s' % a, data = { '_method' : 'DELETE' }) | |
| 796 self.assertEqual(1, len(DoGet(_REMOTE, '/patients'))) | |
| 797 DoGet(_REMOTE, '/patients/%s' % b, data = { '_method' : 'DELETE' }) | |
| 798 self.assertEqual(0, len(DoGet(_REMOTE, '/patients'))) | |
| 799 | |
| 800 | |
| 801 def test_faking_google_put(self): | |
| 802 UploadInstance(_REMOTE, 'Knee/T1/IM-0001-0001.dcm') | |
| 803 UploadInstance(_REMOTE, 'Brainix/Flair/IM-0001-0001.dcm') | |
| 804 self.assertEqual(2, len(DoGet(_REMOTE, '/patients'))) | |
| 805 a = DoGet(_REMOTE, '/patients')[0] | |
| 806 b = DoGet(_REMOTE, '/patients')[1] | |
| 807 self.assertEqual(0, DoGet(_REMOTE, '/patients/%s/protected' % a)) | |
| 808 DoPost(_REMOTE, '/patients/%s/protected' % a, headers = { 'X-HTTP-Method-Override' : 'PUT' }, data = '0') | |
| 809 self.assertEqual(0, DoGet(_REMOTE, '/patients/%s/protected' % a)) | |
| 810 DoPost(_REMOTE, '/patients/%s/protected' % a, headers = { 'X-HTTP-Method-Override' : 'PUT' }, data = '1') | |
| 811 self.assertEqual(1, DoGet(_REMOTE, '/patients/%s/protected' % a)) | |
| 812 DoPost(_REMOTE, '/patients/%s/protected' % a, headers = { 'X-HTTP-Method-Override' : 'PUT' }, data = '0') | |
| 813 self.assertEqual(0, DoGet(_REMOTE, '/patients/%s/protected' % a)) | |
| 814 | |
| 815 | |
| 816 def test_faking_google_delete(self): | |
| 817 UploadInstance(_REMOTE, 'Knee/T1/IM-0001-0001.dcm') | |
| 818 UploadInstance(_REMOTE, 'Brainix/Flair/IM-0001-0001.dcm') | |
| 819 self.assertEqual(2, len(DoGet(_REMOTE, '/patients'))) | |
| 820 a = DoGet(_REMOTE, '/patients')[0] | |
| 821 b = DoGet(_REMOTE, '/patients')[1] | |
| 822 DoPost(_REMOTE, '/patients/%s' % a, headers = { 'X-HTTP-Method-Override' : 'DELETE' }) | |
| 823 self.assertEqual(1, len(DoGet(_REMOTE, '/patients'))) | |
| 824 DoPost(_REMOTE, '/patients/%s' % b, headers = { 'X-HTTP-Method-Override' : 'DELETE' }) | |
| 825 self.assertEqual(0, len(DoGet(_REMOTE, '/patients'))) | |
| 826 | |
| 827 | |
| 828 def test_lua(self): | |
| 829 self.assertEqual(42, DoPost(_REMOTE, '/tools/execute-script', 'print(42)')) | |
| 830 self.assertTrue(IsDefinedInLua(_REMOTE, 'PrintRecursive')) | |
| 831 self.assertFalse(IsDefinedInLua(_REMOTE, 'HelloWorld')) | |
| 832 | |
| 833 | |
| 834 def test_metadata(self): | |
| 835 UploadInstance(_REMOTE, 'Knee/T1/IM-0001-0001.dcm') | |
| 836 p = DoGet(_REMOTE, '/patients')[0] | |
| 837 i = DoGet(_REMOTE, '/instances')[0] | |
| 838 | |
| 839 m = DoGet(_REMOTE, '/patients/%s/metadata' % p) | |
| 840 self.assertEqual(1, len(m)) | |
| 841 self.assertEqual('LastUpdate', m[0]) | |
| 842 | |
| 843 m = DoGet(_REMOTE, '/instances/%s/metadata' % i) | |
| 844 self.assertEqual(3, len(m)) | |
| 845 self.assertTrue('IndexInSeries' in m) | |
| 846 self.assertTrue('ReceptionDate' in m) | |
| 847 self.assertTrue('RemoteAET' in m) | |
| 848 | |
| 849 # Play with custom metadata | |
| 850 DoPut(_REMOTE, '/patients/%s/metadata/5555' % p, 'coucou') | |
| 851 m = DoGet(_REMOTE, '/patients/%s/metadata' % p) | |
| 852 self.assertEqual(2, len(m)) | |
| 853 self.assertTrue('LastUpdate' in m) | |
| 854 self.assertTrue('5555' in m) | |
| 855 self.assertEqual('coucou', DoGet(_REMOTE, '/patients/%s/metadata/5555' % p)) | |
| 856 DoPut(_REMOTE, '/patients/%s/metadata/5555' % p, 'hello') | |
| 857 self.assertEqual('hello', DoGet(_REMOTE, '/patients/%s/metadata/5555' % p)) | |
| 858 DoDelete(_REMOTE, '/patients/%s/metadata/5555' % p) | |
| 859 m = DoGet(_REMOTE, '/patients/%s/metadata' % p) | |
| 860 self.assertEqual(1, len(m)) | |
| 861 self.assertTrue('LastUpdate' in m) | |
| 13 | 862 |
| 863 | |
| 864 def test_statistics(self): | |
| 865 # Upload 16 instances | |
| 866 for i in range(4): | |
| 867 UploadInstance(_REMOTE, 'Brainix/Flair/IM-0001-000%d.dcm' % (i + 1)) | |
| 868 UploadInstance(_REMOTE, 'Brainix/Epi/IM-0001-000%d.dcm' % (i + 1)) | |
| 869 UploadInstance(_REMOTE, 'Knee/T1/IM-0001-000%d.dcm' % (i + 1)) | |
| 870 UploadInstance(_REMOTE, 'Knee/T2/IM-0001-000%d.dcm' % (i + 1)) | |
| 871 | |
| 872 s = DoGet(_REMOTE, '/statistics') | |
| 873 self.assertEqual(16, s['CountInstances']) | |
| 874 self.assertEqual(2, s['CountPatients']) | |
| 875 self.assertEqual(2, s['CountStudies']) | |
| 876 self.assertEqual(4, s['CountSeries']) | |
| 877 d = int(s['TotalUncompressedSize']) | |
| 878 | |
| 879 e = 0 | |
| 880 for patient in DoGet(_REMOTE, '/patients'): | |
| 881 s = DoGet(_REMOTE, '/patients/%s/statistics' % patient) | |
| 882 self.assertEqual(8, s['CountInstances']) | |
| 883 self.assertEqual(1, s['CountStudies']) | |
| 884 self.assertEqual(2, s['CountSeries']) | |
| 885 e += int(s['UncompressedSize']) | |
| 886 | |
| 887 for study in DoGet(_REMOTE, '/studies'): | |
| 888 s = DoGet(_REMOTE, '/studies/%s/statistics' % study) | |
| 889 self.assertEqual(8, s['CountInstances']) | |
| 890 self.assertEqual(2, s['CountSeries']) | |
| 891 e += int(s['UncompressedSize']) | |
| 892 | |
| 893 for series in DoGet(_REMOTE, '/series'): | |
| 894 s = DoGet(_REMOTE, '/series/%s/statistics' % series) | |
| 895 self.assertEqual(4, s['CountInstances']) | |
| 896 e += int(s['UncompressedSize']) | |
| 897 | |
| 898 self.assertEqual(3 * d, e) | |
| 899 | |
| 900 | |
| 901 def test_custom_attachment(self): | |
| 902 UploadInstance(_REMOTE, 'Brainix/Flair/IM-0001-0001.dcm') | |
| 903 patient = DoGet(_REMOTE, '/patients')[0] | |
| 904 instance = DoGet(_REMOTE, '/instances')[0] | |
| 905 size = int(DoGet(_REMOTE, '/patients/%s/statistics' % patient)['DiskSize']) | |
| 906 self.assertEqual(size, int(DoGet(_REMOTE, '/statistics')['TotalDiskSize'])) | |
| 907 | |
| 908 self.assertEqual(0, len(DoGet(_REMOTE, '/patients/%s/attachments' % patient))) | |
| 909 self.assertEqual(2, len(DoGet(_REMOTE, '/instances/%s/attachments' % instance))) | |
| 910 self.assertTrue('dicom' in DoGet(_REMOTE, '/instances/%s/attachments' % instance)) | |
| 911 self.assertTrue('dicom-as-json' in DoGet(_REMOTE, '/instances/%s/attachments' % instance)) | |
| 912 | |
| 913 self.assertRaises(Exception, lambda: DoPut(_REMOTE, '/patients/%s/attachments/22' % patient, 'hello')) | |
| 914 hello = 'hellohellohellohellohellohellohellohellohello' | |
| 915 DoPut(_REMOTE, '/patients/%s/attachments/1025' % patient, hello) | |
| 916 self.assertEqual(int(DoGet(_REMOTE, '/patients/%s/statistics' % patient)['DiskSize']), | |
| 917 int(DoGet(_REMOTE, '/statistics')['TotalDiskSize'])) | |
| 918 self.assertEqual(int(DoGet(_REMOTE, '/patients/%s/statistics' % patient)['DiskSize']), | |
| 919 size + int(DoGet(_REMOTE, '/patients/%s/attachments/1025/compressed-size' % patient))) | |
| 920 | |
| 921 DoPut(_REMOTE, '/patients/%s/attachments/1026' % patient, 'world') | |
| 922 self.assertEqual(int(DoGet(_REMOTE, '/patients/%s/statistics' % patient)['DiskSize']), | |
| 923 int(DoGet(_REMOTE, '/statistics')['TotalDiskSize'])) | |
| 924 self.assertEqual(int(DoGet(_REMOTE, '/patients/%s/statistics' % patient)['DiskSize']), | |
| 925 size + | |
| 926 int(DoGet(_REMOTE, '/patients/%s/attachments/1025/compressed-size' % patient)) + | |
| 927 int(DoGet(_REMOTE, '/patients/%s/attachments/1026/compressed-size' % patient))) | |
| 928 | |
| 929 self.assertEqual(2, len(DoGet(_REMOTE, '/patients/%s/attachments' % patient))) | |
| 930 self.assertEqual(hello, DoGet(_REMOTE, '/patients/%s/attachments/1025/data' % patient)) | |
| 931 self.assertEqual('world', DoGet(_REMOTE, '/patients/%s/attachments/1026/data' % patient)) | |
| 932 DoPost(_REMOTE, '/patients/%s/attachments/1025/verify-md5' % patient) | |
| 933 DoPost(_REMOTE, '/patients/%s/attachments/1026/verify-md5' % patient) | |
| 934 DoPut(_REMOTE, '/patients/%s/attachments/1026' % patient, 'world2') | |
| 935 self.assertEqual('world2', DoGet(_REMOTE, '/patients/%s/attachments/1026/data' % patient)) | |
| 936 | |
| 937 self.assertRaises(Exception, lambda: DoDelete(_REMOTE, '/instances/%s/attachments/dicom' % instance)) | |
| 938 DoDelete(_REMOTE, '/patients/%s/attachments/1025' % patient) | |
| 939 self.assertEqual(int(DoGet(_REMOTE, '/patients/%s/statistics' % patient)['DiskSize']), | |
| 940 int(DoGet(_REMOTE, '/statistics')['TotalDiskSize'])) | |
| 941 self.assertEqual(int(DoGet(_REMOTE, '/patients/%s/statistics' % patient)['DiskSize']), | |
| 942 size + int(DoGet(_REMOTE, '/patients/%s/attachments/1026/compressed-size' % patient))) | |
| 943 | |
| 944 self.assertEqual(1, len(DoGet(_REMOTE, '/patients/%s/attachments' % patient))) | |
| 945 DoDelete(_REMOTE, '/patients/%s/attachments/1026' % patient) | |
| 946 self.assertEqual(0, len(DoGet(_REMOTE, '/patients/%s/attachments' % patient))) | |
| 947 | |
| 948 self.assertEqual(int(DoGet(_REMOTE, '/patients/%s/statistics' % patient)['DiskSize']), size) | |
| 949 self.assertEqual(size, int(DoGet(_REMOTE, '/statistics')['TotalDiskSize'])) | |
| 950 | |
| 951 | |
| 952 def test_incoming_storescu(self): | |
| 953 self.assertEqual(0, len(DoGet(_REMOTE, '/patients'))) | |
| 954 subprocess.check_call([ 'storescu', _REMOTE['Server'], str(_REMOTE['DicomPort']), | |
| 955 GetDatabasePath('ColorTestImageJ.dcm') ]) | |
| 956 self.assertEqual(1, len(DoGet(_REMOTE, '/patients'))) | |
| 957 | |
| 958 | |
| 959 def test_incoming_findscu(self): | |
| 960 def CallFindScu(args): | |
| 961 p = subprocess.Popen([ 'findscu', '-P', '-aec', _REMOTE['DicomAet'], '-aet', _LOCAL['DicomAet'], | |
| 962 _REMOTE['Server'], str(_REMOTE['DicomPort']) ] + args, | |
| 963 stderr=subprocess.PIPE) | |
| 964 return p.communicate()[1] | |
| 965 | |
| 966 UploadInstance(_REMOTE, 'Multiframe.dcm') | |
| 967 UploadInstance(_REMOTE, 'ColorTestImageJ.dcm') | |
| 968 | |
| 969 i = CallFindScu([ '-k', '0008,0052=PATIENT', '-k', '0010,0010' ]) | |
| 970 patientNames = re.findall('\(0010,0010\).*?\[(.*?)\]', i) | |
| 971 self.assertEqual(2, len(patientNames)) | |
| 972 self.assertTrue('Test Patient BG ' in patientNames) | |
| 973 self.assertTrue('Anonymized' in patientNames) | |
| 974 | |
| 975 i = CallFindScu([ '-k', '0008,0052=SERIES', '-k', '0008,0021' ]) | |
| 976 series = re.findall('\(0008,0021\).*?\[\s*(.*?)\s*\]', i) | |
| 977 self.assertEqual(2, len(series)) | |
| 978 self.assertTrue('20070208' in series) | |
| 979 self.assertTrue('19980312' in series) | |
| 980 | |
| 981 i = CallFindScu([ '-k', '0008,0052=SERIES', '-k', 'PatientName=Anonymized' ]) | |
| 982 series = re.findall('\(0010,0010\).*?\[\s*(.*?)\s*\]', i) | |
| 983 self.assertEqual(1, len(series)) | |
| 984 | |
| 985 # Test the "CaseSentitivePN" flag (false by default) | |
| 986 i = CallFindScu([ '-k', '0008,0052=SERIES', '-k', 'PatientName=anonymized' ]) | |
| 987 series = re.findall('\(0010,0010\).*?\[\s*(.*?)\s*\]', i) | |
| 988 self.assertEqual(1, len(series)) | |
| 989 | |
| 990 | |
| 991 def test_incoming_movescu(self): | |
| 992 def CallMoveScu(args): | |
| 993 subprocess.check_call([ 'movescu', | |
| 17 | 994 '--move', _LOCAL['DicomAet'], # Target AET (i.e. storescp) |
| 995 '--call', _REMOTE['DicomAet'], # Called AET (i.e. Orthanc) | |
| 996 '--aetitle', _LOCAL['DicomAet'], # Calling AET (i.e. storescp) | |
| 13 | 997 _REMOTE['Server'], str(_REMOTE['DicomPort']) ] + args, |
| 998 stderr=subprocess.PIPE) | |
| 999 | |
| 1000 UploadInstance(_REMOTE, 'Multiframe.dcm') | |
| 1001 | |
| 1002 self.assertEqual(0, len(DoGet(_LOCAL, '/patients'))) | |
| 17 | 1003 CallMoveScu([ '--patient', '-k', '0008,0052=PATIENT', '-k', 'PatientID=none' ]) |
| 13 | 1004 self.assertEqual(0, len(DoGet(_LOCAL, '/patients'))) |
| 1005 CallMoveScu([ '--patient', '-k', '0008,0052=PATIENT', '-k', 'PatientID=12345678' ]) | |
| 1006 self.assertEqual(1, len(DoGet(_LOCAL, '/patients'))) | |
| 1007 | |
| 1008 | |
| 1009 def test_findscu(self): | |
| 1010 i = UploadInstance(_REMOTE, 'DummyCT.dcm')['ID'] | |
| 1011 j = UploadInstance(_REMOTE, 'Issue22.dcm')['ID'] | |
| 1012 k = UploadInstance(_REMOTE, 'ColorTestImageJ.dcm')['ID'] | |
| 1013 DoPost(_REMOTE, '/modalities/orthanctest/store', str(i), 'text/plain') | |
| 1014 | |
| 1015 # Test the "find-patient" level | |
| 1016 p = DoPost(_REMOTE, '/modalities/orthanctest/find-patient', { }) | |
| 1017 self.assertEqual(1, len(p)) | |
| 1018 self.assertEqual('ozp00SjY2xG', p[0]['PatientID']) | |
| 1019 | |
| 1020 # Test wildcards constraints. The "LO" value representation | |
| 1021 # for PatientID is always case-sensitive, but the "PN" for | |
| 1022 # PatientName might depend on the implementation: | |
| 1023 # "GenerateConfigurationForTests.py" will force it to be case | |
| 1024 # insensitive (which was the default until Orthanc 0.8.6). | |
| 1025 p = DoPost(_REMOTE, '/modalities/orthanctest/find-patient', { 'PatientName' : 'K*' }) | |
| 1026 self.assertEqual(1, len(p)) | |
| 1027 | |
| 1028 p = DoPost(_REMOTE, '/modalities/orthanctest/find-patient', { 'PatientName' : 'k*' }) | |
| 1029 self.assertEqual(1, len(p)) | |
| 1030 | |
| 1031 p = DoPost(_REMOTE, '/modalities/orthanctest/find-patient', { 'PatientID' : 'ozp*' }) | |
| 1032 self.assertEqual(1, len(p)) | |
| 1033 | |
| 1034 p = DoPost(_REMOTE, '/modalities/orthanctest/find-patient', { 'PatientID' : 'o?p*' }) | |
| 1035 self.assertEqual(1, len(p)) | |
| 1036 | |
| 1037 p = DoPost(_REMOTE, '/modalities/orthanctest/find-patient', { 'PatientID' : '0?q*' }) | |
| 1038 self.assertEqual(0, len(p)) | |
| 1039 | |
| 1040 p = DoPost(_REMOTE, '/modalities/orthanctest/find-patient', { 'PatientName' : 'B*' }) | |
| 1041 self.assertEqual(0, len(p)) | |
| 1042 | |
| 1043 p = DoPost(_REMOTE, '/modalities/orthanctest/find-patient', { 'PatientName' : 'b*' }) | |
| 1044 self.assertEqual(0, len(p)) | |
| 1045 | |
| 1046 DoPost(_REMOTE, '/modalities/orthanctest/store', str(j), 'text/plain') | |
| 1047 DoPost(_REMOTE, '/modalities/orthanctest/store', str(k), 'text/plain') | |
| 1048 DoPost(_REMOTE, '/modalities/orthanctest/find-patient', { }) | |
| 1049 self.assertEqual(3, len(DoPost(_REMOTE, '/modalities/orthanctest/find-patient', { }))) | |
| 1050 | |
| 1051 p = DoPost(_REMOTE, '/modalities/orthanctest/find-patient', { 'PatientName' : 'A*' }) | |
| 1052 self.assertEqual(2, len(p)) | |
| 1053 | |
| 1054 # Test the "find-study" level. This is the instance "ColorTestImageJ.dcm" | |
| 1055 s = DoPost(_REMOTE, '/modalities/orthanctest/find-study', { 'PatientID' : 'B9uTHKOZ' }) | |
| 1056 self.assertEqual(1, len(s)) | |
| 1057 self.assertEqual('20070208', s[0]['StudyDate']) | |
| 1058 | |
| 1059 # Test range searches | |
| 1060 t = DoPost(_REMOTE, '/modalities/orthanctest/find-study', { 'PatientID' : 'B9uTHKOZ', | |
| 1061 'StudyDate' : '-20070101' }) | |
| 1062 self.assertEqual(0, len(t)) | |
| 1063 | |
| 1064 t = DoPost(_REMOTE, '/modalities/orthanctest/find-study', { 'PatientID' : 'B9uTHKOZ', | |
| 1065 'StudyDate' : '20090101-' }) | |
| 1066 self.assertEqual(0, len(t)) | |
| 1067 | |
| 1068 t = DoPost(_REMOTE, '/modalities/orthanctest/find-study', { 'PatientID' : 'B9uTHKOZ', | |
| 1069 'StudyDate' : '20070101-' }) | |
| 1070 self.assertEqual(1, len(t)) | |
| 1071 | |
| 1072 t = DoPost(_REMOTE, '/modalities/orthanctest/find-study', { 'PatientID' : 'B9uTHKOZ', | |
| 1073 'StudyDate' : '-20090101' }) | |
| 1074 self.assertEqual(1, len(t)) | |
| 1075 | |
| 1076 t = DoPost(_REMOTE, '/modalities/orthanctest/find-study', { 'PatientID' : 'B9uTHKOZ', | |
| 1077 'StudyDate' : '20070207-20070207' }) | |
| 1078 self.assertEqual(0, len(t)) | |
| 1079 | |
| 1080 t = DoPost(_REMOTE, '/modalities/orthanctest/find-study', { 'PatientID' : 'B9uTHKOZ', | |
| 1081 'StudyDate' : '20070208-20070208' }) | |
| 1082 self.assertEqual(1, len(t)) | |
| 1083 | |
| 1084 t = DoPost(_REMOTE, '/modalities/orthanctest/find-study', { 'PatientID' : 'B9uTHKOZ', | |
| 1085 'StudyDate' : '20070209-20070209' }) | |
| 1086 self.assertEqual(0, len(t)) | |
| 1087 | |
| 1088 # Test the ModalitiesInStudy tag | |
| 1089 t = DoPost(_REMOTE, '/modalities/orthanctest/find-study', { | |
| 1090 'PatientID' : 'B9uTHKOZ', | |
| 1091 'ModalitiesInStudy' : 'US' }) | |
| 1092 self.assertEqual(0, len(t)) | |
| 1093 | |
| 1094 t = DoPost(_REMOTE, '/modalities/orthanctest/find-study', { | |
| 1095 'PatientID' : 'B9uTHKOZ', | |
| 1096 'ModalitiesInStudy' : 'CT' }) | |
| 1097 self.assertEqual(1, len(t)) | |
| 1098 | |
| 1099 t = DoPost(_REMOTE, '/modalities/orthanctest/find-study', { | |
| 1100 'PatientID' : 'B9uTHKOZ', | |
| 1101 'ModalitiesInStudy' : 'US\\CT' }) | |
| 1102 self.assertEqual(1, len(t)) | |
| 1103 | |
| 1104 # Test the "find-series" level | |
| 1105 t = DoPost(_REMOTE, '/modalities/orthanctest/find-series', { | |
| 1106 'PatientID' : 'B9uTHKOZ', | |
| 1107 'StudyInstanceUID' : s[0]['StudyInstanceUID'] }) | |
| 1108 self.assertEqual(1, len(t)) | |
| 1109 | |
| 1110 # Test "\" separator | |
| 1111 t = DoPost(_REMOTE, '/modalities/orthanctest/find-series', { | |
| 1112 'PatientID' : 'B9uTHKOZ', | |
| 1113 'StudyInstanceUID' : s[0]['StudyInstanceUID'], | |
| 1114 'Modality' : 'MR\\CT\\US' }) | |
| 1115 self.assertEqual(1, len(t)) | |
| 1116 | |
| 1117 t = DoPost(_REMOTE, '/modalities/orthanctest/find-series', { | |
| 1118 'PatientID' : 'B9uTHKOZ', | |
| 1119 'StudyInstanceUID' : s[0]['StudyInstanceUID'], | |
| 1120 'Modality' : 'MR\\US' }) | |
| 1121 self.assertEqual(0, len(t)) | |
| 1122 | |
| 1123 | |
| 1124 def test_update_modalities(self): | |
| 1125 try: | |
| 1126 DoDelete(_REMOTE, '/modalities/toto') | |
| 1127 except: | |
| 1128 pass | |
| 1129 try: | |
| 1130 DoDelete(_REMOTE, '/modalities/tata') | |
| 1131 except: | |
| 1132 pass | |
| 1133 self.assertRaises(Exception, lambda: DoGet(_REMOTE, '/modalities/toto')) | |
| 1134 DoPut(_REMOTE, '/modalities/toto', [ "STORESCP", "localhost", 2000 ]) | |
| 1135 DoPut(_REMOTE, '/modalities/tata', [ "STORESCP", "localhost", 2000, 'MedInria' ]) | |
| 1136 self.assertRaises(Exception, lambda: DoPut(_REMOTE, '/modalities/toto', [ "STORESCP", "localhost", 2000, 'MedInriaaa' ])) | |
| 1137 self.assertTrue('store' in DoGet(_REMOTE, '/modalities/toto')) | |
| 1138 self.assertTrue('store' in DoGet(_REMOTE, '/modalities/tata')) | |
| 1139 DoDelete(_REMOTE, '/modalities/toto') | |
| 1140 DoDelete(_REMOTE, '/modalities/tata') | |
| 1141 self.assertRaises(Exception, lambda: DoGet(_REMOTE, '/modalities/toto')) | |
| 1142 self.assertRaises(Exception, lambda: DoGet(_REMOTE, '/modalities/tata')) | |
| 1143 | |
| 1144 | |
| 1145 def test_update_peers(self): | |
| 1146 # curl -X PUT http://localhost:8042/peers/toto -d '["http://localhost:8042/"]' -v | |
| 1147 try: | |
| 1148 DoDelete(_REMOTE, '/peers/toto') | |
| 1149 except: | |
| 1150 pass | |
| 1151 try: | |
| 1152 DoDelete(_REMOTE, '/peers/tata') | |
| 1153 except: | |
| 1154 pass | |
| 1155 self.assertRaises(Exception, lambda: DoGet(_REMOTE, '/peers/toto')) | |
| 1156 DoPut(_REMOTE, '/peers/toto', [ 'http://localhost:8042/' ]) | |
| 1157 DoPut(_REMOTE, '/peers/tata', [ 'http://localhost:8042/', 'user', 'pass' ]) | |
| 1158 self.assertRaises(Exception, lambda: DoPut(_REMOTE, '/peers/toto', [ 'http://localhost:8042/', 'a' ])) | |
| 1159 self.assertRaises(Exception, lambda: DoPut(_REMOTE, '/peers/toto', [ 'http://localhost:8042/', 'a', 'b', 'c' ])) | |
| 1160 self.assertTrue('store' in DoGet(_REMOTE, '/peers/toto')) | |
| 1161 self.assertTrue('store' in DoGet(_REMOTE, '/peers/tata')) | |
| 1162 DoDelete(_REMOTE, '/peers/toto') | |
| 1163 DoDelete(_REMOTE, '/peers/tata') | |
| 1164 self.assertRaises(Exception, lambda: DoGet(_REMOTE, '/peers/toto')) | |
| 1165 self.assertRaises(Exception, lambda: DoGet(_REMOTE, '/peers/tata')) | |
| 1166 | |
| 1167 | |
| 1168 def test_mesterhazy_modification(self): | |
| 1169 # When I modify a series ( eg. curl | |
| 1170 # http://localhost:8042/series/uidhere/modify -X POST -d | |
| 1171 # '{"Replace":{"SeriesDate":"19990101"}}' ) the modified | |
| 1172 # series is added to a new Study, instead of the existing | |
| 1173 # Study. Fixed in Orthanc 0.7.5 | |
| 1174 | |
| 1175 u = UploadInstance(_REMOTE, 'DummyCT.dcm') | |
| 1176 study = 'b9c08539-26f93bde-c81ab0d7-bffaf2cb-a4d0bdd0' | |
| 1177 series = 'f2635388-f01d497a-15f7c06b-ad7dba06-c4c599fe' | |
| 1178 | |
| 1179 modified = DoPost(_REMOTE, '/series/%s/modify' % series, | |
| 1180 json.dumps({ "Replace" : { "SeriesDate" : "19990101" }})) | |
| 1181 | |
| 1182 self.assertEqual(study, DoGet(_REMOTE, '/series/%s' % modified['ID']) ['ParentStudy']) | |
| 1183 | |
| 1184 | |
| 1185 def test_create(self): | |
| 1186 i = DoPost(_REMOTE, '/tools/create-dicom', | |
| 1187 json.dumps({ | |
| 1188 'PatientName' : 'Jodogne', | |
| 1189 'Modality' : 'CT', | |
| 1190 'PixelData' : 'data:image/png;base64,iVBORw0KGgoAAAANSUhEUgAAAAUAAAAFCAYAAACNbyblAAAAHElEQVQI12P4//8/w38GIAXDIBKE0DHxgljNBAAO9TXL0Y4OHwAAAABJRU5ErkJggg==' # red dot in RGBA | |
| 1191 })) | |
| 1192 | |
| 1193 self.assertEqual('Jodogne', DoGet(_REMOTE, '/instances/%s/content/PatientName' % i['ID']).strip()) | |
| 1194 self.assertEqual('CT', DoGet(_REMOTE, '/instances/%s/content/Modality' % i['ID']).strip()) | |
| 1195 | |
| 1196 png = GetImage(_REMOTE, '/instances/%s/preview' % i['ID']) | |
| 1197 self.assertEqual((5, 5), png.size) | |
| 1198 | |
| 1199 | |
| 1200 def test_pilates(self): | |
| 1201 # "SCU failed error when accessing orthanc with osirix" by | |
| 1202 # Pilates Agentur (Mar 10, 2014 at 9:33 PM) | |
| 1203 i = UploadInstance(_REMOTE, 'PilatesArgenturGEUltrasoundOsiriX.dcm')['ID'] | |
| 1204 self.assertEqual(0, len(DoGet(_LOCAL, '/patients'))) | |
| 1205 j = DoPost(_REMOTE, '/modalities/orthanctest/store', str(i), 'text/plain') | |
| 1206 self.assertEqual(1, len(DoGet(_LOCAL, '/patients'))) | |
| 1207 | |
| 1208 | |
| 1209 def test_shared_tags(self): | |
| 1210 a = UploadInstance(_REMOTE, 'Knee/T1/IM-0001-0001.dcm')['ID'] | |
| 1211 b = UploadInstance(_REMOTE, 'Knee/T1/IM-0001-0002.dcm')['ID'] | |
| 1212 p = DoGet(_REMOTE, '/patients')[0] | |
| 1213 | |
| 1214 self.assertTrue('0010,0010' in DoGet(_REMOTE, '/patients/%s/shared-tags' % p)) | |
| 1215 self.assertTrue('PatientName' in DoGet(_REMOTE, '/patients/%s/shared-tags?simplify' % p)) | |
| 1216 self.assertTrue('0008,1030' in DoGet(_REMOTE, '/patients/%s/shared-tags' % p)) | |
| 1217 self.assertTrue('StudyDescription' in DoGet(_REMOTE, '/patients/%s/shared-tags?simplify' % p)) | |
| 1218 self.assertTrue('0008,103e' in DoGet(_REMOTE, '/patients/%s/shared-tags' % p)) | |
| 1219 self.assertTrue('SeriesDescription' in DoGet(_REMOTE, '/patients/%s/shared-tags?simplify' % p)) | |
| 1220 self.assertFalse('0008,0018' in DoGet(_REMOTE, '/patients/%s/shared-tags' % p)) | |
| 1221 self.assertFalse('SOPInstanceUID' in DoGet(_REMOTE, '/patients/%s/shared-tags?simplify' % p)) | |
| 1222 | |
| 1223 self.assertTrue('0008,0018' in DoGet(_REMOTE, '/instances/%s/tags' % a)) | |
| 1224 self.assertTrue('SOPInstanceUID' in DoGet(_REMOTE, '/instances/%s/tags?simplify' % a)) | |
| 1225 | |
| 1226 | |
| 1227 def test_modules(self): | |
| 1228 a = UploadInstance(_REMOTE, 'Knee/T1/IM-0001-0001.dcm')['ID'] | |
| 1229 p = DoGet(_REMOTE, '/patients')[0] | |
| 1230 s = DoGet(_REMOTE, '/studies')[0] | |
| 1231 t = DoGet(_REMOTE, '/series')[0] | |
| 1232 | |
| 1233 self.assertTrue('0010,0010' in DoGet(_REMOTE, '/patients/%s/module' % p)) | |
| 1234 self.assertTrue('PatientName' in DoGet(_REMOTE, '/patients/%s/module?simplify' % p)) | |
| 1235 self.assertTrue('0010,0010' in DoGet(_REMOTE, '/studies/%s/module-patient' % p)) | |
| 1236 self.assertTrue('PatientName' in DoGet(_REMOTE, '/studies/%s/module-patient?simplify' % p)) | |
| 1237 self.assertTrue('0008,1030' in DoGet(_REMOTE, '/studies/%s/module' % s)) | |
| 1238 self.assertTrue('StudyDescription' in DoGet(_REMOTE, '/studies/%s/module?simplify' % s)) | |
| 1239 self.assertTrue('0008,103e' in DoGet(_REMOTE, '/series/%s/module' % p)) | |
| 1240 self.assertTrue('SeriesDescription' in DoGet(_REMOTE, '/series/%s/module?simplify' % p)) | |
| 1241 self.assertTrue('0008,0018' in DoGet(_REMOTE, '/instances/%s/module' % a)) | |
| 1242 self.assertTrue('SOPInstanceUID' in DoGet(_REMOTE, '/instances/%s/module?simplify' % a)) | |
| 1243 | |
| 1244 | |
| 1245 def test_auto_directory(self): | |
| 1246 a = UploadInstance(_REMOTE, 'Knee/T1/IM-0001-0001.dcm')['ID'] | |
| 1247 self.assertTrue('now' in DoGet(_REMOTE, '/tools')) | |
| 1248 self.assertTrue('dicom-conformance' in DoGet(_REMOTE, '/tools')) | |
| 1249 self.assertTrue(len(DoGet(_REMOTE, '/tools/dicom-conformance')) > 1000) | |
| 1250 self.assertTrue('orthanctest' in DoGet(_REMOTE, '/modalities')) | |
| 1251 self.assertTrue('echo' in DoGet(_REMOTE, '/modalities/orthanctest')) | |
| 1252 self.assertTrue('find' in DoGet(_REMOTE, '/modalities/orthanctest')) | |
| 1253 self.assertTrue('find-instance' in DoGet(_REMOTE, '/modalities/orthanctest')) | |
| 1254 self.assertTrue('find-patient' in DoGet(_REMOTE, '/modalities/orthanctest')) | |
| 1255 self.assertTrue('find-series' in DoGet(_REMOTE, '/modalities/orthanctest')) | |
| 1256 self.assertTrue('find-study' in DoGet(_REMOTE, '/modalities/orthanctest')) | |
| 1257 self.assertTrue('store' in DoGet(_REMOTE, '/modalities/orthanctest')) | |
| 1258 self.assertTrue('store' in DoGet(_REMOTE, '/peers/peer')) | |
| 1259 self.assertTrue('matlab' in DoGet(_REMOTE, '/instances/%s/frames/0' % a)) | |
| 1260 self.assertRaises(Exception, lambda: DoGet(_REMOTE, '/tools/nope')) | |
| 1261 | |
| 1262 | |
| 1263 def test_echo(self): | |
| 1264 DoPost(_REMOTE, '/modalities/orthanctest/echo') | |
| 1265 | |
| 1266 | |
| 1267 def test_xml(self): | |
| 1268 json = DoGet(_REMOTE, '/tools', headers = { 'accept' : 'application/json' }) | |
| 1269 xml = minidom.parseString(DoGet(_REMOTE, '/tools', headers = { 'accept' : 'application/xml' })) | |
| 1270 items = xml.getElementsByTagName('root')[0].getElementsByTagName('item') | |
| 1271 self.assertEqual(len(items), len(json)) | |
| 1272 | |
| 1273 self.assertTrue('dicom-conformance' in json) | |
| 1274 | |
| 1275 ok = False | |
| 1276 for i in items: | |
| 1277 if i.childNodes[0].data == 'dicom-conformance': | |
| 1278 ok = True | |
| 1279 self.assertTrue(ok) | |
| 1280 | |
| 1281 | |
| 1282 def test_issue_16(self): | |
| 1283 i = UploadInstance(_REMOTE, 'Issue16.dcm')['ID'] | |
| 1284 t = DoGet(_REMOTE, '/instances/%s/tags?simplify' % i)['FrameIncrementPointer'] | |
| 1285 self.assertEqual('0018,1063', t) | |
| 1286 | |
| 1287 | |
| 1288 def test_issue_22(self): | |
| 1289 s = UploadInstance(_REMOTE, 'Issue22.dcm')['ID'] | |
| 1290 a = [ | |
| 1291 "f804691f62197040438f4627c6b994f1", # Frame 0 | |
| 1292 "c69eee9a51eea3e8611e82e578897254", | |
| 1293 "315666be83e2d0111c77bc0996d84901", | |
| 1294 "3e27aa959d911172c48a1436443c72b1", | |
| 1295 "958642c9e7e9d232d3869faff546058c", | |
| 1296 "5e7ea8e3e4230cae707d143481355c59", | |
| 1297 "eda37f83558d858a596175aed8b2ad47", | |
| 1298 "486713bd2895c4ecbe0e97715ac7f80a", | |
| 1299 "091ef729eb169e67da8a0faa9631f9a8", | |
| 1300 "5aa2b8c7ffe0a483efaa8e12417686ca", | |
| 1301 "e2f39e85896fe58876654b94cd0b5013", | |
| 1302 "6fd2129e4950abbe1be053bc814d5da8", | |
| 1303 "c3331a8ba7a757f3d423735ab7fa81f9", | |
| 1304 "746f808582156734dd6b6fdfd3a0b72c", | |
| 1305 "8075ea2b227a70c60ea6b7b75a6bb190", | |
| 1306 "806b8b3e300c615099c11a5ec23465aa", | |
| 1307 "7c836aa298ba6eef96434579af631a11", | |
| 1308 "a0357dc9f4f72d73a885c33d7c287446", | |
| 1309 "f25ba3be1cc7d7fad95706adc199ea7d", | |
| 1310 "8b114c526b8cbed6cad8a3248b7b480c", | |
| 1311 "44e6670f127e612a2b4aa60a0d207698", | |
| 1312 "b8945f90fe02facf2ace24ca1ecbe0a5", | |
| 1313 "95c796c2fa8f59018b15cf2987b1f79b", | |
| 1314 "ce0a51ab30224205b44920221dc27351", # Frame 23 | |
| 1315 ] | |
| 1316 | |
| 1317 self.assertEqual(24, len(DoGet(_REMOTE, '/instances/%s/frames' % s))) | |
| 1318 self.assertRaises(Exception, lambda: DoGet(_REMOTE, '/instances/%s/frames/24/preview' % s)) | |
| 1319 | |
| 1320 for i in range(len(a)): | |
| 1321 self.assertEqual(a[i], ComputeMD5(DoGet(_REMOTE, '/instances/%s/frames/%d/preview' % (s, i)))) | |
| 1322 | |
| 1323 | |
| 1324 def test_issue_19(self): | |
| 1325 # This is an image with "YBR_FULL" photometric interpretation | |
| 1326 # gdcmconv -i /home/jodogne/DICOM/GdcmDatabase/US_DataSet/HDI5000_US/3EAF5E01 -w -o Issue19.dcm | |
| 1327 | |
| 1328 a = UploadInstance(_REMOTE, 'Issue19.dcm')['ID'] | |
| 1329 i = DoGet(_REMOTE, '/instances/941ad3c8-05d05b88-560459f9-0eae0e20-6cddd533/preview') | |
| 1330 | |
| 1331 # eb5d156c3594497f589158a6c6f3ca51 <=> Unsupported.png | |
| 1332 self.assertEqual('eb5d156c3594497f589158a6c6f3ca51', ComputeMD5(i)) | |
| 1333 | |
| 1334 | |
| 1335 def test_issue_37(self): | |
| 1336 # Same test for issues 35 and 37. Fixed in Orthanc 0.9.1 | |
| 1337 u = UploadInstance(_REMOTE, 'Beaufix/IM-0001-0001.dcm')['ID'] | |
| 1338 | |
| 1339 a = DoPost(_REMOTE, '/tools/find', { 'Level' : 'Series', | |
| 1340 'CaseSensitive' : True, | |
| 1341 'Query' : { 'StationName' : 'SMR4-MP3' }}) | |
| 1342 self.assertEqual(1, len(a)) | |
| 14 | 1343 |
| 1344 | |
| 1345 def test_rest_find(self): | |
| 1346 # Upload 8 instances | |
| 1347 for i in range(2): | |
| 1348 UploadInstance(_REMOTE, 'Brainix/Flair/IM-0001-000%d.dcm' % (i + 1)) | |
| 1349 UploadInstance(_REMOTE, 'Brainix/Epi/IM-0001-000%d.dcm' % (i + 1)) | |
| 1350 UploadInstance(_REMOTE, 'Knee/T1/IM-0001-000%d.dcm' % (i + 1)) | |
| 1351 UploadInstance(_REMOTE, 'Knee/T2/IM-0001-000%d.dcm' % (i + 1)) | |
| 1352 | |
| 1353 a = DoPost(_REMOTE, '/tools/find', { 'Level' : 'Patient', | |
| 1354 'CaseSensitive' : False, | |
| 1355 'Query' : { 'PatientName' : '*n*' }}) | |
| 1356 self.assertEqual(2, len(a)) | |
| 1357 | |
| 1358 a = DoPost(_REMOTE, '/tools/find', { 'Level' : 'Patient', | |
| 1359 'CaseSensitive' : True, | |
| 1360 'Query' : { 'PatientName' : '*n*' }}) | |
| 1361 self.assertEqual(0, len(a)) | |
| 1362 | |
| 1363 a = DoPost(_REMOTE, '/tools/find', { 'Expand' : True, | |
| 1364 'Level' : 'Patient', | |
| 1365 'CaseSensitive' : False, | |
| 1366 'Query' : { 'PatientName' : '*ne*' }}) | |
| 1367 self.assertEqual(1, len(a)) | |
| 1368 self.assertEqual('20080822', a[0]['MainDicomTags']['PatientBirthDate']) | |
| 1369 | |
| 1370 a = DoPost(_REMOTE, '/tools/find', { 'Level' : 'Patient', | |
| 1371 'CaseSensitive' : True, | |
| 1372 'Query' : { 'PatientName' : '*ne*' }}) | |
| 1373 self.assertEqual(0, len(a)) | |
| 1374 | |
| 1375 a = DoPost(_REMOTE, '/tools/find', { 'Level' : 'Study', | |
| 1376 'CaseSensitive' : True, | |
| 1377 'Query' : { 'PatientName' : '*NE*' }}) | |
| 1378 self.assertEqual(1, len(a)) | |
| 1379 | |
| 1380 a = DoPost(_REMOTE, '/tools/find', { 'Level' : 'Series', | |
| 1381 'CaseSensitive' : True, | |
| 1382 'Query' : { 'PatientName' : '*NE*' }}) | |
| 1383 self.assertEqual(2, len(a)) | |
| 1384 | |
| 1385 a = DoPost(_REMOTE, '/tools/find', { 'Level' : 'Instance', | |
| 1386 'CaseSensitive' : True, | |
| 1387 'Query' : { 'PatientName' : '*NE*' }}) | |
| 1388 self.assertEqual(4, len(a)) | |
| 1389 | |
| 1390 a = DoPost(_REMOTE, '/tools/find', { 'Level' : 'Patient', 'Query' : { }}) | |
| 1391 self.assertEqual(2, len(a)) | |
| 1392 | |
| 1393 a = DoPost(_REMOTE, '/tools/find', { 'Level' : 'Study', 'Query' : { }}) | |
| 1394 self.assertEqual(2, len(a)) | |
| 1395 | |
| 1396 a = DoPost(_REMOTE, '/tools/find', { 'Level' : 'Series', 'Query' : { }}) | |
| 1397 self.assertEqual(4, len(a)) | |
| 1398 | |
| 1399 a = DoPost(_REMOTE, '/tools/find', { 'Level' : 'Instance', 'Query' : { }}) | |
| 1400 self.assertEqual(8, len(a)) | |
| 1401 | |
| 1402 | |
| 1403 def test_rest_query_retrieve(self): | |
| 1404 self.assertEqual(0, len(DoGet(_REMOTE, '/patients'))) | |
| 1405 | |
| 1406 # Upload 8 instances | |
| 1407 for i in range(2): | |
| 1408 UploadInstance(_REMOTE, 'Brainix/Flair/IM-0001-000%d.dcm' % (i + 1)) | |
| 1409 UploadInstance(_REMOTE, 'Brainix/Epi/IM-0001-000%d.dcm' % (i + 1)) | |
| 1410 UploadInstance(_REMOTE, 'Knee/T1/IM-0001-000%d.dcm' % (i + 1)) | |
| 1411 UploadInstance(_REMOTE, 'Knee/T2/IM-0001-000%d.dcm' % (i + 1)) | |
| 1412 | |
| 1413 self.assertEqual(2, len(DoGet(_REMOTE, '/patients'))) | |
| 1414 for p in DoGet(_REMOTE, '/patients'): | |
| 1415 DoPost(_REMOTE, '/modalities/orthanctest/store', p) | |
| 1416 DoDelete(_REMOTE, '/patients/%s' % p) | |
| 1417 | |
| 1418 for q in DoGet(_REMOTE, '/queries'): | |
| 1419 DoDelete(_REMOTE, '/queries/%s' % q) | |
| 1420 | |
| 1421 self.assertEqual(0, len(DoGet(_REMOTE, '/patients'))) | |
| 1422 self.assertEqual(0, len(DoGet(_REMOTE, '/queries'))) | |
| 1423 a = DoPost(_REMOTE, '/modalities/orthanctest/query', { 'Level' : 'Series', | |
| 1424 'Query' : { 'PatientName' : '*NE*' }})['ID'] | |
| 1425 self.assertEqual(1, len(DoGet(_REMOTE, '/queries'))) | |
| 1426 | |
| 1427 b = DoGet(_REMOTE, '/queries/%s' % a) | |
| 1428 self.assertTrue('answers' in b) | |
| 1429 self.assertTrue('level' in b) | |
| 1430 self.assertTrue('modality' in b) | |
| 1431 self.assertTrue('query' in b) | |
| 1432 self.assertTrue('retrieve' in b) | |
| 1433 self.assertEqual('Series', DoGet(_REMOTE, '/queries/%s/level' % a)) | |
| 1434 self.assertEqual('orthanctest', DoGet(_REMOTE, '/queries/%s/modality' % a)) | |
| 1435 | |
| 1436 q = DoGet(_REMOTE, '/queries/%s/query?simplify' % a) | |
| 1437 self.assertEqual(1, len(q)) | |
| 1438 self.assertTrue('PatientName' in q) | |
| 1439 self.assertEqual('*NE*', q['PatientName']) | |
| 1440 | |
| 1441 self.assertEqual(2, len(DoGet(_REMOTE, '/queries/%s/answers' % a))) | |
| 1442 | |
| 1443 s = DoGet(_REMOTE, '/queries/%s/answers/0' % a) | |
| 1444 self.assertTrue('content' in s) | |
| 1445 self.assertTrue('retrieve' in s) | |
| 1446 | |
| 1447 s = DoGet(_REMOTE, '/queries/%s/answers/0/content?simplify' % a) | |
| 1448 self.assertEqual('887', s['PatientID']) | |
| 1449 self.assertEqual('2.16.840.1.113669.632.20.121711.10000160881', s['StudyInstanceUID']) | |
| 1450 | |
| 1451 self.assertEqual(0, len(DoGet(_REMOTE, '/patients'))) | |
| 1452 DoPost(_REMOTE, '/queries/%s/answers/0/retrieve' % a, 'ORTHANC') | |
| 1453 self.assertEqual(1, len(DoGet(_REMOTE, '/patients'))) | |
| 1454 self.assertEqual(1, len(DoGet(_REMOTE, '/studies'))) | |
| 1455 self.assertEqual(1, len(DoGet(_REMOTE, '/series'))) | |
| 1456 self.assertEqual(2, len(DoGet(_REMOTE, '/instances'))) | |
| 1457 | |
| 1458 DoPost(_REMOTE, '/queries/%s/answers/1/retrieve' % a, 'ORTHANC') | |
| 1459 self.assertEqual(1, len(DoGet(_REMOTE, '/patients'))) | |
| 1460 self.assertEqual(1, len(DoGet(_REMOTE, '/studies'))) | |
| 1461 self.assertEqual(2, len(DoGet(_REMOTE, '/series'))) | |
| 1462 self.assertEqual(4, len(DoGet(_REMOTE, '/instances'))) | |
| 1463 | |
| 1464 DoDelete(_REMOTE, '/queries/%s' % a) | |
| 1465 self.assertEqual(0, len(DoGet(_REMOTE, '/queries'))) | |
| 1466 | |
| 1467 | |
| 1468 def test_parent(self): | |
| 1469 u = UploadInstance(_REMOTE, 'DummyCT.dcm')['ID'] | |
| 1470 patient = '6816cb19-844d5aee-85245eba-28e841e6-2414fae2' | |
| 1471 study = 'b9c08539-26f93bde-c81ab0d7-bffaf2cb-a4d0bdd0' | |
| 1472 series = 'f2635388-f01d497a-15f7c06b-ad7dba06-c4c599fe' | |
| 1473 instance = '66a662ce-7430e543-bad44d47-0dc5a943-ec7a538d' | |
| 1474 self.assertEqual(instance, u); | |
| 1475 | |
| 1476 a = DoGet(_REMOTE, '/studies/%s/patient' % study) | |
| 1477 self.assertEqual('Patient', a['Type']) | |
| 1478 self.assertEqual(patient, a['ID']) | |
| 1479 | |
| 1480 a = DoGet(_REMOTE, '/series/%s/patient' % series) | |
| 1481 self.assertEqual('Patient', a['Type']) | |
| 1482 self.assertEqual(patient, a['ID']) | |
| 1483 | |
| 1484 a = DoGet(_REMOTE, '/series/%s/study' % series) | |
| 1485 self.assertEqual('Study', a['Type']) | |
| 1486 self.assertEqual(study, a['ID']) | |
| 1487 | |
| 1488 a = DoGet(_REMOTE, '/instances/%s/patient' % instance) | |
| 1489 self.assertEqual('Patient', a['Type']) | |
| 1490 self.assertEqual(patient, a['ID']) | |
| 1491 | |
| 1492 a = DoGet(_REMOTE, '/instances/%s/study' % instance) | |
| 1493 self.assertEqual('Study', a['Type']) | |
| 1494 self.assertEqual(study, a['ID']) | |
| 1495 | |
| 1496 a = DoGet(_REMOTE, '/instances/%s/series' % instance) | |
| 1497 self.assertEqual('Series', a['Type']) | |
| 1498 self.assertEqual(series, a['ID']) | |
| 1499 | |
| 1500 | |
| 1501 def test_shanon(self): | |
| 1502 def Anonymize(instance, replacements = {}): | |
| 1503 return DoPost(_REMOTE, '/instances/%s/anonymize' % instance, { 'Replace' : replacements }, 'application/json') | |
| 1504 | |
| 1505 self.assertEqual(0, len(DoGet(_REMOTE, '/instances'))) | |
| 1506 u = UploadInstance(_REMOTE, 'DummyCT.dcm')['ID'] | |
| 1507 self.assertEqual(1, len(DoGet(_REMOTE, '/instances'))) | |
| 1508 | |
| 1509 tags = [ 'PatientID', 'StudyInstanceUID', 'SeriesInstanceUID', 'SOPInstanceUID', 'DeidentificationMethod' ] | |
| 1510 ids = [ 'ozp00SjY2xG', | |
| 1511 '1.2.840.113619.2.176.2025.1499492.7391.1171285944.390', | |
| 1512 '1.2.840.113619.2.176.2025.1499492.7391.1171285944.394', | |
| 1513 '1.2.840.113619.2.176.2025.1499492.7040.1171286242.109' ] | |
| 1514 | |
| 1515 a = ExtractDicomTags(Anonymize(u), tags) | |
| 1516 for i in range(4): | |
| 1517 self.assertNotEqual(ids[i], a[i]) | |
| 1518 self.assertTrue(a[4].startswith('Orthanc')) | |
| 1519 | |
| 1520 a = ExtractDicomTags(Anonymize(u, { 'PatientName' : 'toto' }), tags) | |
| 1521 for i in range(4): | |
| 1522 self.assertNotEqual(ids[i], a[i]) | |
| 1523 self.assertFalse(a[4].startswith('Orthanc')) | |
| 1524 | |
| 1525 a = ExtractDicomTags(Anonymize(u, { 'SOPInstanceUID' : 'instance' }), tags) | |
| 1526 self.assertEqual('instance', a[3]) | |
| 1527 self.assertFalse(a[4].startswith('Orthanc')) | |
| 1528 | |
| 1529 a = ExtractDicomTags(Anonymize(u, { 'SeriesInstanceUID' : 'series' }), tags) | |
| 1530 self.assertEqual('series', a[2]) | |
| 1531 self.assertFalse(a[4].startswith('Orthanc')) | |
| 1532 | |
| 1533 a = ExtractDicomTags(Anonymize(u, { 'StudyInstanceUID' : 'study' }), tags) | |
| 1534 self.assertEqual('study', a[1]) | |
| 1535 self.assertFalse(a[4].startswith('Orthanc')) | |
| 1536 | |
| 1537 a = ExtractDicomTags(Anonymize(u, { 'PatientID' : 'patient' }), tags) | |
| 1538 self.assertEqual('patient', a[0]) | |
| 1539 self.assertFalse(a[4].startswith('Orthanc')) | |
| 1540 | |
| 1541 a = ExtractDicomTags(Anonymize(u, { 'PatientID' : 'patient', | |
| 1542 'StudyInstanceUID' : 'study', | |
| 1543 'SeriesInstanceUID' : 'series', | |
| 1544 'SOPInstanceUID' : 'instance' }), tags) | |
| 1545 self.assertEqual('patient', a[0]) | |
| 1546 self.assertFalse(a[4].startswith('Orthanc')) | |
| 1547 | |
| 1548 self.assertEqual(1, len(DoGet(_REMOTE, '/instances'))) | |
| 1549 | |
| 1550 | |
| 1551 def test_shanon_2(self): | |
| 1552 def Modify(instance, replacements = {}): | |
| 1553 return DoPost(_REMOTE, '/instances/%s/modify' % instance, { 'Replace' : replacements }, 'application/json') | |
| 1554 | |
| 1555 self.assertEqual(0, len(DoGet(_REMOTE, '/instances'))) | |
| 1556 u = UploadInstance(_REMOTE, 'DummyCT.dcm')['ID'] | |
| 1557 self.assertEqual(1, len(DoGet(_REMOTE, '/instances'))) | |
| 1558 | |
| 1559 tags = [ 'PatientID', 'StudyInstanceUID', 'SeriesInstanceUID', 'SOPInstanceUID', 'DeidentificationMethod' ] | |
| 1560 ids = [ 'ozp00SjY2xG', | |
| 1561 '1.2.840.113619.2.176.2025.1499492.7391.1171285944.390', | |
| 1562 '1.2.840.113619.2.176.2025.1499492.7391.1171285944.394', | |
| 1563 '1.2.840.113619.2.176.2025.1499492.7040.1171286242.109' ] | |
| 1564 | |
| 1565 a = ExtractDicomTags(Modify(u), tags) | |
| 1566 self.assertEqual(ids[0], a[0]) | |
| 1567 self.assertEqual(ids[1], a[1]) | |
| 1568 self.assertEqual(ids[2], a[2]) | |
| 1569 self.assertNotEqual(ids[3], a[3]) | |
| 1570 self.assertEqual(0, len(a[4])) | |
| 1571 | |
| 1572 a = ExtractDicomTags(Modify(u, { 'SOPInstanceUID' : 'instance' }), tags) | |
| 1573 self.assertEqual(ids[0], a[0]) | |
| 1574 self.assertEqual(ids[1], a[1]) | |
| 1575 self.assertEqual(ids[2], a[2]) | |
| 1576 self.assertEqual('instance', a[3]) | |
| 1577 | |
| 1578 a = ExtractDicomTags(Modify(u, { 'SeriesInstanceUID' : 'series' }), tags) | |
| 1579 self.assertEqual(ids[0], a[0]) | |
| 1580 self.assertEqual(ids[1], a[1]) | |
| 1581 self.assertEqual('series', a[2]) | |
| 1582 self.assertNotEqual(ids[3], a[3]) | |
| 1583 | |
| 1584 a = ExtractDicomTags(Modify(u, { 'StudyInstanceUID' : 'study' }), tags) | |
| 1585 self.assertEqual(ids[0], a[0]) | |
| 1586 self.assertEqual('study', a[1]) | |
| 1587 self.assertNotEqual(ids[2], a[2]) | |
| 1588 self.assertNotEqual(ids[3], a[3]) | |
| 1589 | |
| 1590 a = ExtractDicomTags(Modify(u, { 'PatientID' : 'patient' }), tags) | |
| 1591 self.assertEqual('patient', a[0]) | |
| 1592 self.assertNotEqual(ids[1], a[1]) | |
| 1593 self.assertNotEqual(ids[2], a[2]) | |
| 1594 self.assertNotEqual(ids[3], a[3]) | |
| 1595 | |
| 1596 a = ExtractDicomTags(Modify(u, { 'PatientID' : 'patient', | |
| 1597 'StudyInstanceUID' : 'study', | |
| 1598 'SeriesInstanceUID' : 'series', | |
| 1599 'SOPInstanceUID' : 'instance' }), tags) | |
| 1600 self.assertEqual('patient', a[0]) | |
| 1601 self.assertEqual('study', a[1]) | |
| 1602 self.assertEqual('series', a[2]) | |
| 1603 self.assertEqual('instance', a[3]) | |
| 1604 | |
| 1605 self.assertEqual(1, len(DoGet(_REMOTE, '/instances'))) | |
| 1606 | |
| 1607 | |
| 1608 def test_instances_tags(self): | |
| 1609 a = UploadInstance(_REMOTE, 'Knee/T1/IM-0001-0001.dcm')['ID'] | |
| 1610 b = UploadInstance(_REMOTE, 'Knee/T2/IM-0001-0001.dcm')['ID'] | |
| 1611 #a = UploadInstance(_REMOTE, 'Cardiac/MR.X.1.2.276.0.7230010.3.1.4.2831157719.2256.1336386937.676343')['ID'] | |
| 1612 #b = UploadInstance(_REMOTE, 'Cardiac/MR.X.1.2.276.0.7230010.3.1.4.2831157719.2256.1336386925.676329')['ID'] | |
| 1613 | |
| 1614 i = DoGet(_REMOTE, '/patients/%s/instances-tags?simplify' % DoGet(_REMOTE, '/patients')[0]) | |
| 1615 self.assertEqual(2, len(i)) | |
| 1616 self.assertEqual('887', i[i.keys()[0]]['PatientID']) | |
| 1617 self.assertEqual('887', i[i.keys()[1]]['PatientID']) | |
| 1618 | |
| 1619 i = DoGet(_REMOTE, '/patients/%s/instances-tags?simplify' % DoGet(_REMOTE, '/studies')[0]) | |
| 1620 self.assertEqual(2, len(i)) | |
| 1621 self.assertEqual('887', i[i.keys()[0]]['PatientID']) | |
| 1622 self.assertEqual('887', i[i.keys()[1]]['PatientID']) | |
| 1623 | |
| 1624 self.assertEqual(2, len(DoGet(_REMOTE, '/series'))) | |
| 1625 i = DoGet(_REMOTE, '/patients/%s/instances-tags?simplify' % DoGet(_REMOTE, '/series')[0]) | |
| 1626 self.assertEqual(1, len(i)) | |
| 1627 self.assertEqual('887', i[i.keys()[0]]['PatientID']) | |
| 1628 | |
| 1629 i = DoGet(_REMOTE, '/patients/%s/instances-tags?simplify' % DoGet(_REMOTE, '/series')[1]) | |
| 1630 self.assertEqual(1, len(i)) | |
| 1631 self.assertEqual('887', i[i.keys()[0]]['PatientID']) | |
| 1632 | |
| 1633 | |
| 1634 def test_lookup(self): | |
| 1635 a = DoPost(_REMOTE, '/tools/lookup', 'ozp00SjY2xG') | |
| 1636 self.assertEqual(0, len(a)) | |
| 1637 | |
| 1638 UploadInstance(_REMOTE, 'DummyCT.dcm') | |
| 1639 | |
| 1640 a = DoPost(_REMOTE, '/tools/lookup', 'ozp00SjY2xG') | |
| 1641 self.assertEqual(1, len(a)) | |
| 1642 self.assertEqual('Patient', a[0]['Type']) | |
| 1643 self.assertEqual('6816cb19-844d5aee-85245eba-28e841e6-2414fae2', a[0]['ID']) | |
| 1644 self.assertEqual('/patients/%s' % a[0]['ID'], a[0]['Path']) | |
| 1645 | |
| 1646 a = DoPost(_REMOTE, '/tools/lookup', '1.2.840.113619.2.176.2025.1499492.7391.1171285944.390') | |
| 1647 self.assertEqual(1, len(a)) | |
| 1648 self.assertEqual('Study', a[0]['Type']) | |
| 1649 self.assertEqual('b9c08539-26f93bde-c81ab0d7-bffaf2cb-a4d0bdd0', a[0]['ID']) | |
| 1650 self.assertEqual('/studies/%s' % a[0]['ID'], a[0]['Path']) | |
| 1651 | |
| 1652 a = DoPost(_REMOTE, '/tools/lookup', '1.2.840.113619.2.176.2025.1499492.7391.1171285944.394') | |
| 1653 self.assertEqual(1, len(a)) | |
| 1654 self.assertEqual('Series', a[0]['Type']) | |
| 1655 self.assertEqual('f2635388-f01d497a-15f7c06b-ad7dba06-c4c599fe', a[0]['ID']) | |
| 1656 self.assertEqual('/series/%s' % a[0]['ID'], a[0]['Path']) | |
| 1657 | |
| 1658 a = DoPost(_REMOTE, '/tools/lookup', '1.2.840.113619.2.176.2025.1499492.7040.1171286242.109') | |
| 1659 self.assertEqual(1, len(a)) | |
| 1660 self.assertEqual('Instance', a[0]['Type']) | |
| 1661 self.assertEqual('66a662ce-7430e543-bad44d47-0dc5a943-ec7a538d', a[0]['ID']) | |
| 1662 self.assertEqual('/instances/%s' % a[0]['ID'], a[0]['Path']) | |
| 1663 | |
| 1664 DropOrthanc(_REMOTE) | |
| 1665 a = DoPost(_REMOTE, '/tools/lookup', '3113719P') | |
| 1666 self.assertEqual(0, len(a)) | |
| 1667 | |
| 15 | 1668 |
| 1669 def test_autorouting(self): | |
| 1670 knee1 = 'Knee/T1/IM-0001-0001.dcm' | |
| 1671 knee2 = 'Knee/T2/IM-0001-0002.dcm' | |
| 1672 other = 'Brainix/Flair/IM-0001-0001.dcm' | |
| 1673 | |
| 1674 # Check that this version is >= 0.8.0 | |
| 1675 self.assertTrue(IsDefinedInLua(_REMOTE, '_InitializeJob')) | |
| 1676 self.assertTrue('orthanctest' in DoGet(_REMOTE, '/modalities')) | |
| 1677 | |
| 1678 UploadInstance(_REMOTE, knee1) | |
| 1679 self.assertEqual(0, len(DoGet(_LOCAL, '/instances'))) | |
| 1680 | |
| 1681 DropOrthanc(_REMOTE) | |
| 1682 DropOrthanc(_LOCAL) | |
| 1683 InstallLuaScript('Lua/Autorouting.lua') | |
| 1684 UploadInstance(_REMOTE, knee1) | |
| 1685 UploadInstance(_REMOTE, knee2) | |
| 1686 UploadInstance(_REMOTE, other) | |
| 1687 WaitEmpty(_REMOTE) | |
| 1688 UninstallLuaCallbacks() | |
| 1689 self.assertEqual(3, len(DoGet(_LOCAL, '/instances'))) | |
| 1690 | |
| 1691 DropOrthanc(_REMOTE) | |
| 1692 DropOrthanc(_LOCAL) | |
| 1693 InstallLuaScript('Lua/AutoroutingConditional.lua') | |
| 1694 UploadInstance(_REMOTE, knee1) | |
| 1695 UploadInstance(_REMOTE, knee2) | |
| 1696 UploadInstance(_REMOTE, other) | |
| 1697 WaitEmpty(_REMOTE) | |
| 1698 UninstallLuaCallbacks() | |
| 1699 self.assertEqual(2, len(DoGet(_LOCAL, '/instances'))) | |
| 1700 | |
| 1701 DropOrthanc(_REMOTE) | |
| 1702 DropOrthanc(_LOCAL) | |
| 1703 InstallLuaScript('Lua/AutoroutingModification.lua') | |
| 1704 UploadInstance(_REMOTE, knee1) | |
| 1705 WaitEmpty(_REMOTE) | |
| 1706 UninstallLuaCallbacks() | |
| 1707 i = DoGet(_LOCAL, '/instances') | |
| 1708 self.assertEqual(1, len(i)) | |
| 1709 | |
| 1710 with tempfile.NamedTemporaryFile(delete = True) as f: | |
| 1711 f.write(DoGet(_LOCAL, '/instances/%s/file' % i[0])) | |
| 1712 f.flush() | |
| 1713 routed = subprocess.check_output([ 'dcm2xml', f.name ]) | |
| 1714 self.assertEqual('My Medical Device', re.search('"StationName">(.*?)<', routed).group(1).strip()) | |
| 1715 self.assertEqual(None, re.search('"MilitaryRank"', routed)) | |
| 1716 self.assertEqual(None, re.search('"0051,0010"', routed)) # A private tag | |
| 17 | 1717 |
| 1718 | |
| 1719 def test_storescu_rf(self): | |
| 1720 i = UploadInstance(_REMOTE, 'KarstenHilbertRF.dcm')['ID'] | |
| 1721 self.assertEqual(0, len(DoGet(_LOCAL, '/instances'))) | |
| 1722 j = DoPost(_REMOTE, '/modalities/orthanctest/store', str(i), 'text/plain') | |
| 1723 self.assertEqual(1, len(DoGet(_LOCAL, '/instances'))) |