Mercurial > hg > orthanc-tests
annotate Tests/Tests.py @ 55:a395fd51cc4f
test_dicom_to_json
| author | Sebastien Jodogne <s.jodogne@gmail.com> |
|---|---|
| date | Wed, 21 Oct 2015 16:11:43 +0200 |
| parents | c5f8a6b0d85e |
| children | 1059b8de42de |
| rev | line source |
|---|---|
| 22 | 1 #!/usr/bin/env python |
| 2 # -*- coding: utf-8 -*- | |
| 3 | |
| 4 | |
| 3 | 5 # Orthanc - A Lightweight, RESTful DICOM Store |
| 6 # Copyright (C) 2012-2015 Sebastien Jodogne, Medical Physics | |
| 7 # Department, University Hospital of Liege, Belgium | |
| 8 # | |
| 9 # This program is free software: you can redistribute it and/or | |
| 10 # modify it under the terms of the GNU General Public License as | |
| 11 # published by the Free Software Foundation, either version 3 of the | |
| 12 # License, or (at your option) any later version. | |
| 13 # | |
| 14 # This program is distributed in the hope that it will be useful, but | |
| 15 # WITHOUT ANY WARRANTY; without even the implied warranty of | |
| 16 # MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU | |
| 17 # General Public License for more details. | |
| 18 # | |
| 19 # You should have received a copy of the GNU General Public License | |
| 20 # along with this program. If not, see <http://www.gnu.org/licenses/>. | |
| 21 | |
| 22 | |
| 14 | 23 import tempfile |
| 3 | 24 import unittest |
| 36 | 25 import base64 |
| 3 | 26 |
| 11 | 27 from PIL import ImageChops |
| 3 | 28 from Toolbox import * |
| 13 | 29 from xml.dom import minidom |
| 3 | 30 |
| 31 _LOCAL = None | |
| 32 _REMOTE = None | |
| 33 | |
| 34 | |
| 35 def SetOrthancParameters(local, remote): | |
| 36 global _LOCAL, _REMOTE | |
| 37 _LOCAL = local | |
| 38 _REMOTE = remote | |
| 39 | |
| 40 | |
| 14 | 41 def ExtractDicomTags(rawDicom, tags): |
| 42 with tempfile.NamedTemporaryFile(delete = True) as f: | |
| 43 f.write(rawDicom) | |
| 44 f.flush() | |
| 45 | 45 data = subprocess.check_output([ FindExecutable('dcm2xml'), f.name ]) |
| 14 | 46 |
| 47 result = [] | |
| 48 for tag in tags: | |
| 49 match = re.search('<element[^>]+name="%s">([^>]*)</element>' % tag, data) | |
| 50 if match == None: | |
| 51 result.append('') | |
| 52 else: | |
| 53 result.append(match.group(1)) | |
| 54 | |
| 55 return result | |
| 56 | |
| 57 | |
| 15 | 58 def InstallLuaScript(path): |
| 59 with open(GetDatabasePath(path), 'r') as f: | |
| 60 DoPost(_REMOTE, '/tools/execute-script', f.read(), 'application/lua') | |
| 61 | |
| 62 | |
| 63 def UninstallLuaCallbacks(): | |
| 64 DoPost(_REMOTE, '/tools/execute-script', 'function OnStoredInstance() end', 'application/lua') | |
| 43 | 65 InstallLuaScript('Lua/TransferSyntaxEnable.lua') |
| 15 | 66 |
| 67 | |
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68 def CompareLists(a, b): |
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69 if len(a) != len(b): |
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70 return False |
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71 |
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72 for i in range(len(a)): |
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73 d = a[i] - b[i] |
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74 if abs(d) >= 0.51: # Add some tolerance for rounding errors |
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75 return False |
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76 |
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77 return True |
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78 |
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79 |
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80 def CallMoveScu(args): |
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81 subprocess.check_call([ FindExecutable('movescu'), |
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82 '--move', _LOCAL['DicomAet'], # Target AET (i.e. storescp) |
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83 '--call', _REMOTE['DicomAet'], # Called AET (i.e. Orthanc) |
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84 '--aetitle', _LOCAL['DicomAet'], # Calling AET (i.e. storescp) |
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85 _REMOTE['Server'], str(_REMOTE['DicomPort']) ] + args, |
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86 stderr=subprocess.PIPE) |
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87 |
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88 |
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89 |
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90 def GenerateTestSequence(): |
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91 return [ |
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92 { |
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93 'StudyDescription': 'Hello^', |
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94 'ReferencedStudySequence' : [ |
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95 { |
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96 'StudyDescription': 'Toto', |
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97 }, |
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98 { |
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99 'StudyDescription': 'Tata', |
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100 }, |
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101 ] |
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102 }, |
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103 { |
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104 'StudyDescription': 'Sébastien^', |
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105 'StudyDate' : '19700202', |
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106 } |
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107 ] |
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108 |
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109 |
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110 |
| 15 | 111 |
| 3 | 112 class Orthanc(unittest.TestCase): |
| 113 def setUp(self): | |
| 114 DropOrthanc(_LOCAL) | |
| 115 DropOrthanc(_REMOTE) | |
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116 UninstallLuaCallbacks() |
| 45 | 117 #print "In test", self._testMethodName |
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118 |
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119 def AssertSameImages(self, truth, url): |
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120 im = GetImage(_REMOTE, url) |
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121 self.assertTrue(CompareLists(truth, im.getdata())) |
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122 |
| 3 | 123 |
| 124 def test_system(self): | |
| 125 self.assertTrue('Version' in DoGet(_REMOTE, '/system')) | |
| 126 self.assertEqual('0', DoGet(_REMOTE, '/statistics')['TotalDiskSize']) | |
| 127 self.assertEqual('0', DoGet(_REMOTE, '/statistics')['TotalUncompressedSize']) | |
| 128 | |
| 129 def test_upload(self): | |
| 130 u = UploadInstance(_REMOTE, 'DummyCT.dcm') | |
| 131 self.assertEqual('Success', u['Status']) | |
| 132 u = UploadInstance(_REMOTE, 'DummyCT.dcm') | |
| 133 self.assertEqual('AlreadyStored', u['Status']) | |
| 134 self.assertEqual(1, len(DoGet(_REMOTE, '/patients'))) | |
| 135 self.assertEqual(1, len(DoGet(_REMOTE, '/studies'))) | |
| 136 self.assertEqual(1, len(DoGet(_REMOTE, '/series'))) | |
| 137 self.assertEqual(1, len(DoGet(_REMOTE, '/instances'))) | |
| 138 | |
| 139 i = DoGet(_REMOTE, '/instances/%s/simplified-tags' % u['ID']) | |
| 140 self.assertEqual('20070101', i['StudyDate']) | |
| 141 | |
| 142 | |
| 5 | 143 def test_upload_2(self): |
| 3 | 144 i = UploadInstance(_REMOTE, 'DummyCT.dcm')['ID'] |
| 145 instance = DoGet(_REMOTE, '/instances/%s' % i) | |
| 146 self.assertEqual(i, instance['ID']) | |
| 147 self.assertEqual('1.2.840.113619.2.176.2025.1499492.7040.1171286242.109', | |
| 148 instance['MainDicomTags']['SOPInstanceUID']) | |
| 149 | |
| 150 series = DoGet(_REMOTE, '/series/%s' % instance['ParentSeries']) | |
| 151 self.assertEqual('1.2.840.113619.2.176.2025.1499492.7391.1171285944.394', | |
| 152 series['MainDicomTags']['SeriesInstanceUID']) | |
| 153 | |
| 154 study = DoGet(_REMOTE, '/studies/%s' % series['ParentStudy']) | |
| 155 self.assertEqual('1.2.840.113619.2.176.2025.1499492.7391.1171285944.390', | |
| 156 study['MainDicomTags']['StudyInstanceUID']) | |
| 157 | |
| 158 patient = DoGet(_REMOTE, '/patients/%s' % study['ParentPatient']) | |
| 159 self.assertEqual('ozp00SjY2xG', | |
| 160 patient['MainDicomTags']['PatientID']) | |
| 161 | |
| 162 dicom = DoGet(_REMOTE, '/instances/%s/file' % instance['ID']) | |
| 163 self.assertEqual(2472, len(dicom)) | |
| 164 self.assertEqual('3e29b869978b6db4886355a2b1132124', ComputeMD5(dicom)) | |
| 165 self.assertEqual(1, len(DoGet(_REMOTE, '/instances/%s/frames' % i))) | |
| 166 self.assertEqual('TWINOW', DoGet(_REMOTE, '/instances/%s/simplified-tags' % i)['StationName']) | |
| 167 self.assertEqual('TWINOW', DoGet(_REMOTE, '/instances/%s/tags' % i)['0008,1010']['Value']) | |
| 168 | |
| 169 | |
| 5 | 170 def test_images(self): |
| 171 i = UploadInstance(_REMOTE, 'Phenix/IM-0001-0001.dcm')['ID'] | |
| 172 self.assertEqual(1, len(DoGet(_REMOTE, '/instances/%s/frames' % i))) | |
| 3 | 173 |
| 5 | 174 im = GetImage(_REMOTE, '/instances/%s/preview' % i) |
| 175 self.assertEqual("L", im.mode) | |
| 176 self.assertEqual(512, im.size[0]) | |
| 177 self.assertEqual(358, im.size[1]) | |
| 178 | |
| 179 im = GetImage(_REMOTE, '/instances/%s/image-uint8' % i) | |
| 180 self.assertEqual("L", im.mode) | |
| 181 self.assertEqual(512, im.size[0]) | |
| 182 self.assertEqual(358, im.size[1]) | |
| 183 | |
| 184 im = GetImage(_REMOTE, '/instances/%s/image-uint16' % i) | |
| 185 self.assertEqual(512, im.size[0]) | |
| 186 self.assertEqual(358, im.size[1]) | |
| 187 | |
| 188 im = GetImage(_REMOTE, '/instances/%s/frames/0/preview' % i) | |
| 189 self.assertEqual("L", im.mode) | |
| 190 self.assertEqual(512, im.size[0]) | |
| 191 self.assertEqual(358, im.size[1]) | |
| 192 | |
| 193 im = GetImage(_REMOTE, '/instances/%s/frames/0/image-uint8' % i) | |
| 194 self.assertEqual("L", im.mode) | |
| 195 self.assertEqual(512, im.size[0]) | |
| 196 self.assertEqual(358, im.size[1]) | |
| 197 | |
| 198 im = GetImage(_REMOTE, '/instances/%s/frames/0/image-uint16' % i) | |
| 199 self.assertEqual(512, im.size[0]) | |
| 200 self.assertEqual(358, im.size[1]) | |
| 201 | |
| 6 | 202 |
| 203 def test_hierarchy(self): | |
| 204 UploadFolder(_REMOTE, 'Brainix/Epi') | |
| 205 UploadFolder(_REMOTE, 'Brainix/Flair') | |
| 206 UploadFolder(_REMOTE, 'Knee/T1') | |
| 207 UploadFolder(_REMOTE, 'Knee/T2') | |
| 208 | |
| 209 p = DoGet(_REMOTE, '/patients') | |
| 210 s = DoGet(_REMOTE, '/studies') | |
| 211 t = DoGet(_REMOTE, '/series') | |
| 212 self.assertEqual(2, len(p)) | |
| 213 self.assertEqual(2, len(s)) | |
| 214 self.assertEqual(4, len(t)) | |
| 215 self.assertEqual(94, len(DoGet(_REMOTE, '/instances'))) | |
| 216 | |
| 217 brainixPatient = '16738bc3-e47ed42a-43ce044c-a3414a45-cb069bd0' | |
| 218 brainixStudy = '27f7126f-4f66fb14-03f4081b-f9341db2-53925988' | |
| 219 brainixEpi = '2ac1316d-3e432022-62eabff2-c59f5475-9b1ac3f8' | |
| 220 brainixFlair = '1e2c125c-411b8e86-3f4fe68e-a7584dd3-c6da78f0' | |
| 221 | |
| 222 kneePatient = 'ca29faea-b6a0e17f-067743a1-8b778011-a48b2a17' | |
| 223 kneeStudy = '0a9b3153-2512774b-2d9580de-1fc3dcf6-3bd83918' | |
| 224 kneeT1 = '6de73705-c4e65c1b-9d9ea1b5-cabcd8e7-f15e4285' | |
| 225 kneeT2 = 'bbf7a453-0d34251a-03663b55-46bb31b9-ffd74c59' | |
| 226 | |
| 227 self.assertTrue(brainixPatient in p) | |
| 228 self.assertTrue(kneePatient in p) | |
| 229 self.assertTrue(brainixStudy in s) | |
| 230 self.assertTrue(kneeStudy in s) | |
| 231 self.assertTrue(brainixEpi in t) | |
| 232 self.assertTrue(brainixFlair in t) | |
| 233 self.assertTrue(kneeT1 in t) | |
| 234 self.assertTrue(kneeT2 in t) | |
| 235 | |
| 236 self.assertEqual(44, len(DoGet(_REMOTE, '/patients/%s/instances' % brainixPatient))) | |
| 237 self.assertEqual(2, len(DoGet(_REMOTE, '/patients/%s/series' % brainixPatient))) | |
| 238 self.assertEqual(1, len(DoGet(_REMOTE, '/patients/%s/studies' % brainixPatient))) | |
| 239 | |
| 240 self.assertEqual(50, len(DoGet(_REMOTE, '/patients/%s/instances' % kneePatient))) | |
| 241 self.assertEqual(2, len(DoGet(_REMOTE, '/patients/%s/series' % kneePatient))) | |
| 242 self.assertEqual(1, len(DoGet(_REMOTE, '/patients/%s/studies' % kneePatient))) | |
| 243 | |
| 244 self.assertEqual(2, len(DoGet(_REMOTE, '/studies/%s/series' % brainixStudy))) | |
| 245 self.assertEqual(44, len(DoGet(_REMOTE, '/studies/%s/instances' % brainixStudy))) | |
| 246 | |
| 247 self.assertEqual(2, len(DoGet(_REMOTE, '/studies/%s/series' % kneeStudy))) | |
| 248 self.assertEqual(50, len(DoGet(_REMOTE, '/studies/%s/instances' % kneeStudy))) | |
| 249 | |
| 250 self.assertEqual(22, len(DoGet(_REMOTE, '/series/%s/instances' % brainixEpi))) | |
| 251 self.assertEqual(22, len(DoGet(_REMOTE, '/series/%s/instances' % brainixFlair))) | |
| 252 self.assertEqual(24, len(DoGet(_REMOTE, '/series/%s/instances' % kneeT1))) | |
| 253 self.assertEqual(26, len(DoGet(_REMOTE, '/series/%s/instances' % kneeT2))) | |
| 254 | |
| 255 for patient in p: | |
| 256 for study in DoGet(_REMOTE, '/patients/%s/studies' % patient): | |
| 257 self.assertEqual(patient, study['ParentPatient']) | |
| 258 for series in DoGet(_REMOTE, '/studies/%s/series' % study['ID']): | |
| 259 self.assertEqual(study['ID'], series['ParentStudy']) | |
| 260 for instance in DoGet(_REMOTE, '/series/%s/instances' % series['ID']): | |
| 261 self.assertEqual(series['ID'], instance['ParentSeries']) | |
| 262 | |
| 263 self.assertEqual(json.dumps(DoGet(_REMOTE, '/instances/%s/attachments/dicom-as-json/data' % instance['ID'])), | |
| 264 json.dumps(DoGet(_REMOTE, '/instances/%s/tags' % instance['ID']))) | |
| 265 | |
| 266 | |
| 267 r = DoDelete(_REMOTE, "/studies/%s" % brainixStudy)['RemainingAncestor'] | |
| 268 self.assertEqual(1, len(DoGet(_REMOTE, '/patients'))) | |
| 269 self.assertEqual(1, len(DoGet(_REMOTE, '/studies'))) | |
| 270 self.assertEqual(2, len(DoGet(_REMOTE, '/series'))) | |
| 271 self.assertEqual(50, len(DoGet(_REMOTE, '/instances'))) | |
| 272 self.assertEqual(None, r) | |
| 273 | |
| 274 r = DoDelete(_REMOTE, "/series/%s" % kneeT2)['RemainingAncestor'] | |
| 275 self.assertEqual(1, len(DoGet(_REMOTE, '/patients'))) | |
| 276 self.assertEqual(1, len(DoGet(_REMOTE, '/studies'))) | |
| 277 self.assertEqual(1, len(DoGet(_REMOTE, '/series'))) | |
| 278 self.assertEqual(24, len(DoGet(_REMOTE, '/instances'))) | |
| 279 self.assertEqual('Study', r['Type']) | |
| 280 self.assertEqual(kneeStudy, r['ID']) | |
| 281 | |
| 282 r = DoDelete(_REMOTE, "/instances/%s" % DoGet(_REMOTE, '/instances')[0])['RemainingAncestor'] | |
| 283 self.assertEqual(1, len(DoGet(_REMOTE, '/patients'))) | |
| 284 self.assertEqual(1, len(DoGet(_REMOTE, '/studies'))) | |
| 285 self.assertEqual(1, len(DoGet(_REMOTE, '/series'))) | |
| 286 self.assertEqual(23, len(DoGet(_REMOTE, '/instances'))) | |
| 287 self.assertEqual('Series', r['Type']) | |
| 288 self.assertEqual(kneeT1, r['ID']) | |
| 289 | |
| 290 r = DoDelete(_REMOTE, "/patients/%s" % kneePatient)['RemainingAncestor'] | |
| 291 self.assertEqual(0, len(DoGet(_REMOTE, '/patients'))) | |
| 292 self.assertEqual(0, len(DoGet(_REMOTE, '/studies'))) | |
| 293 self.assertEqual(0, len(DoGet(_REMOTE, '/series'))) | |
| 294 self.assertEqual(0, len(DoGet(_REMOTE, '/instances'))) | |
| 295 self.assertEqual(None, r) | |
| 296 | |
| 297 DropOrthanc(_REMOTE) | |
| 298 self.assertEqual('0', DoGet(_REMOTE, '/statistics')['TotalDiskSize']) | |
| 299 self.assertEqual('0', DoGet(_REMOTE, '/statistics')['TotalUncompressedSize']) | |
| 7 | 300 |
| 301 | |
|
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302 def test_multiframe(self): |
| 7 | 303 i = UploadInstance(_REMOTE, 'Multiframe.dcm')['ID'] |
| 304 self.assertEqual(76, len(DoGet(_REMOTE, '/instances/%s/frames' % i))) | |
| 305 | |
| 306 im = GetImage(_REMOTE, '/instances/%s/frames/0/preview' % i) | |
| 307 self.assertEqual("L", im.mode) | |
| 308 self.assertEqual(512, im.size[0]) | |
| 309 self.assertEqual(512, im.size[1]) | |
| 310 | |
| 311 DoGet(_REMOTE, '/instances/%s/frames/0/image-uint8' % i) | |
| 312 DoGet(_REMOTE, '/instances/%s/frames/0/image-uint16' % i) | |
| 313 DoGet(_REMOTE, '/instances/%s/frames/75/preview' % i) | |
| 314 self.assertRaises(Exception, lambda: DoGet(_REMOTE, '/instances/%s/frames/aaa/preview' % i)) | |
| 315 self.assertRaises(Exception, lambda: DoGet(_REMOTE, '/instances/%s/frames/76/preview' % i)) | |
| 316 | |
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317 |
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318 def test_changes(self): |
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319 # Check emptiness |
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320 c = DoGet(_REMOTE, '/changes') |
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321 self.assertEqual(0, len(c['Changes'])) |
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322 self.assertEqual(0, c['Last']) |
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323 self.assertTrue(c['Done']) |
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324 c = DoGet(_REMOTE, '/changes?last') |
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325 self.assertEqual(0, len(c['Changes'])) |
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326 self.assertEqual(0, c['Last']) |
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327 self.assertTrue(c['Done']) |
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328 |
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329 # Add 1 instance |
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330 i = UploadInstance(_REMOTE, 'Brainix/Flair/IM-0001-0001.dcm')['ID'] |
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331 c = DoGet(_REMOTE, '/changes') |
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332 begin = c['Last'] |
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333 self.assertEqual(4, len(c['Changes'])) |
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334 self.assertTrue(c['Done']) |
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335 self.assertEqual(c['Changes'][-1]['Seq'], c['Last']) |
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336 |
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337 c = DoGet(_REMOTE, '/changes?last') |
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338 self.assertEqual(1, len(c['Changes'])) |
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339 self.assertEqual(begin, c['Last']) |
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340 self.assertTrue(c['Done']) |
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341 c = DoGet(_REMOTE, '/changes?limit=1&since=' + str(begin - 1)) |
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342 self.assertEqual(1, len(c['Changes'])) |
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343 self.assertEqual(begin, c['Last']) |
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344 self.assertTrue(c['Done']) |
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345 c = DoGet(_REMOTE, '/changes?limit=1&since=' + str(begin - 2)) |
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346 self.assertEqual(1, len(c['Changes'])) |
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347 self.assertEqual(begin - 1, c['Last']) |
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348 self.assertFalse(c['Done']) |
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349 c = DoGet(_REMOTE, '/changes?limit=1&since=' + str(begin - 3)) |
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350 self.assertEqual(1, len(c['Changes'])) |
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351 self.assertEqual(begin - 2, c['Last']) |
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352 self.assertFalse(c['Done']) |
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353 |
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354 UploadFolder(_REMOTE, 'Knee/T1') |
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355 UploadFolder(_REMOTE, 'Knee/T2') |
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356 since = begin |
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357 countPatients = 0 |
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358 countStudies = 0 |
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359 countSeries = 0 |
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360 countInstances = 0 |
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361 completed = 0 |
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362 while True: |
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363 c = DoGet(_REMOTE, '/changes', { 'since' : since, 'limit' : 3 }) |
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364 since = c['Last'] |
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365 for i in c['Changes']: |
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366 if i['ResourceType'] == 'Instance': |
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367 countInstances += 1 |
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368 if i['ResourceType'] == 'Patient': |
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369 countPatients += 1 |
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370 if i['ResourceType'] == 'Study': |
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371 countStudies += 1 |
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372 if i['ResourceType'] == 'Series': |
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373 countSeries += 1 |
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374 if i['ChangeType'] == 'NewInstance': |
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375 countInstances += 1 |
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376 if i['ChangeType'] == 'NewPatient': |
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377 countPatients += 1 |
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378 if i['ChangeType'] == 'NewStudy': |
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379 countStudies += 1 |
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380 if i['ChangeType'] == 'NewSeries': |
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381 countSeries += 1 |
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382 if i['ChangeType'] == 'CompletedSeries': |
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383 completed += 1 |
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384 self.assertTrue('ID' in i) |
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385 self.assertTrue('Path' in i) |
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386 self.assertTrue('Seq' in i) |
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387 if c['Done']: |
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388 break |
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389 |
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390 self.assertEqual(2 * 50, countInstances) |
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391 self.assertEqual(2 * 1, countPatients) |
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392 self.assertEqual(2 * 1, countStudies) |
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393 self.assertEqual(2 * 2, countSeries) |
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394 self.assertEqual(0, completed) |
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395 |
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396 |
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397 def test_archive(self): |
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398 UploadInstance(_REMOTE, 'Knee/T1/IM-0001-0001.dcm') |
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399 UploadInstance(_REMOTE, 'Knee/T2/IM-0001-0001.dcm') |
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400 |
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401 z = GetArchive(_REMOTE, '/patients/%s/archive' % DoGet(_REMOTE, '/patients')[0]) |
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402 self.assertEqual(2, len(z.namelist())) |
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403 |
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404 z = GetArchive(_REMOTE, '/studies/%s/archive' % DoGet(_REMOTE, '/studies')[0]) |
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405 self.assertEqual(2, len(z.namelist())) |
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406 |
|
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407 z = GetArchive(_REMOTE, '/series/%s/archive' % DoGet(_REMOTE, '/series')[0]) |
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408 self.assertEqual(1, len(z.namelist())) |
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409 |
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|
410 UploadInstance(_REMOTE, 'Brainix/Flair/IM-0001-0001.dcm') |
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411 |
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412 z = GetArchive(_REMOTE, '/patients/%s/archive' % DoGet(_REMOTE, '/patients')[0]) |
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413 self.assertEqual(2, len(z.namelist())) |
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414 |
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415 |
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416 def test_media_archive(self): |
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417 UploadInstance(_REMOTE, 'Knee/T1/IM-0001-0001.dcm') |
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418 UploadInstance(_REMOTE, 'Knee/T2/IM-0001-0001.dcm') |
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419 |
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420 z = GetArchive(_REMOTE, '/patients/%s/media' % DoGet(_REMOTE, '/patients')[0]) |
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421 self.assertEqual(3, len(z.namelist())) |
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422 self.assertTrue('IMAGES/IM0' in z.namelist()) |
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423 self.assertTrue('IMAGES/IM1' in z.namelist()) |
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424 self.assertTrue('DICOMDIR' in z.namelist()) |
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425 |
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426 try: |
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427 os.remove('/tmp/DICOMDIR') |
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428 except: |
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429 # The file does not exist |
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430 pass |
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431 |
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432 z.extract('DICOMDIR', '/tmp') |
| 45 | 433 a = subprocess.check_output([ FindExecutable('dciodvfy'), '/tmp/DICOMDIR' ], |
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434 stderr = subprocess.STDOUT).split('\n') |
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435 self.assertEqual(3, len(a)) |
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436 self.assertTrue(a[0].startswith('Warning')) |
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437 self.assertEqual('BasicDirectory', a[1]) |
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438 self.assertEqual('', a[2]) |
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439 |
| 45 | 440 a = subprocess.check_output([ FindExecutable('dcentvfy'), '/tmp/DICOMDIR' ], |
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441 stderr = subprocess.STDOUT).split('\n') |
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442 self.assertEqual(1, len(a)) |
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443 self.assertEqual('', a[0]) |
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444 |
| 45 | 445 a = subprocess.check_output([ FindExecutable('dcm2xml'), '/tmp/DICOMDIR' ]) |
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446 self.assertTrue(re.search('1.3.46.670589.11.17521.5.0.3124.2008081908590448738', a) != None) |
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447 self.assertTrue(re.search('1.3.46.670589.11.17521.5.0.3124.2008081909113806560', a) != None) |
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448 |
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449 os.remove('/tmp/DICOMDIR') |
| 10 | 450 |
| 451 | |
| 452 def test_protection(self): | |
| 453 UploadInstance(_REMOTE, 'Knee/T1/IM-0001-0001.dcm') | |
| 454 UploadInstance(_REMOTE, 'Brainix/Flair/IM-0001-0001.dcm') | |
| 455 self.assertEqual(2, len(DoGet(_REMOTE, '/patients'))) | |
| 456 a = DoGet(_REMOTE, '/patients')[0] | |
| 457 b = DoGet(_REMOTE, '/patients')[1] | |
| 458 self.assertEqual(0, DoGet(_REMOTE, '/patients/%s/protected' % a)) | |
| 459 DoPut(_REMOTE, '/patients/%s/protected' % a, '0', 'text/plain') | |
| 460 self.assertEqual(0, DoGet(_REMOTE, '/patients/%s/protected' % a)) | |
| 461 DoPut(_REMOTE, '/patients/%s/protected' % a, '1', 'text/plain') | |
| 462 self.assertEqual(1, DoGet(_REMOTE, '/patients/%s/protected' % a)) | |
| 463 DoPut(_REMOTE, '/patients/%s/protected' % a, '0', 'text/plain') | |
| 464 self.assertEqual(0, DoGet(_REMOTE, '/patients/%s/protected' % a)) | |
| 465 | |
| 466 | |
| 12 | 467 def test_raw_tags(self): |
| 10 | 468 i = UploadInstance(_REMOTE, 'PrivateTags.dcm')['ID'] |
| 469 | |
| 470 dicom = DoGet(_REMOTE, '/instances/%s/file' % i) | |
| 471 self.assertEqual('1a7c56cb02d6e742cc9c856a8ac182e3', ComputeMD5(dicom)) | |
| 472 | |
| 473 s = '/instances/%s/content/' % i | |
| 474 | |
| 475 self.assertEqual('LOGIQBOOK', DoGet(_REMOTE, s + '0008-1010').strip()) | |
| 476 self.assertRaises(Exception, lambda: DoGet(_REMOTE, s + '0008-1011')) | |
| 477 | |
| 478 self.assertEqual('Abdomen', DoGet(_REMOTE, s + '7fe1-1001/0/7fe1-1008/0/7fe1-1057').strip()) | |
| 479 self.assertEqual('cla_3c', DoGet(_REMOTE, s + '7fe1-1001/0/7fe1-1008/8/7fe1-1057').strip()) | |
| 480 | |
| 481 UploadInstance(_REMOTE, 'Brainix/Epi/IM-0001-0001.dcm') | |
| 482 UploadInstance(_REMOTE, 'Brainix/Flair/IM-0001-0001.dcm') | |
| 483 UploadInstance(_REMOTE, 'Knee/T1/IM-0001-0001.dcm') | |
| 484 UploadInstance(_REMOTE, 'Knee/T2/IM-0001-0001.dcm') | |
| 485 | |
| 486 for i in DoGet(_REMOTE, '/instances'): | |
| 487 aid = DoGet(_REMOTE, '/instances/%s' % i)['MainDicomTags']['SOPInstanceUID'] | |
| 488 self.assertEqual(aid, DoGet(_REMOTE, '/instances/%s/content/0008-0018' % i).replace(chr(0), '')) | |
| 489 | |
| 490 | |
| 491 def test_raw_tags_mdn(self): | |
| 492 # Bug reported by Cyril Paulus | |
| 493 i = UploadInstance(_REMOTE, 'PrivateMDNTags.dcm')['ID'] | |
| 494 self.assertAlmostEqual(0.000027, DoGet(_REMOTE, '/instances/%s/content/7053-1000' % i)) | |
| 495 | |
| 496 | |
| 497 def test_modify_instance(self): | |
| 498 i = UploadInstance(_REMOTE, 'PrivateTags.dcm')['ID'] | |
| 499 modified = DoPost(_REMOTE, '/instances/%s/modify' % i, | |
| 500 json.dumps({ | |
| 501 "Replace" : { | |
| 502 "PatientName" : "hello", | |
| 503 #"PatientID" : "world" | |
| 504 }, | |
| 505 "Remove" : [ "StationName" ], | |
| 506 "RemovePrivateTags" : None | |
| 507 }), | |
| 508 'application/json') | |
| 509 j = DoPost(_REMOTE, '/instances', modified, 'application/dicom')['ID'] | |
| 510 | |
| 511 self.assertNotEqual('hello', DoGet(_REMOTE, '/instances/%s/content/0010-0010' % i).strip()) | |
| 512 #self.assertNotEqual('world', DoGet(_REMOTE, '/instances/%s/content/0010-0020' % i).strip()) | |
| 513 self.assertEqual('LOGIQBOOK', DoGet(_REMOTE, '/instances/%s/content/0008-1010' % i).strip()) | |
| 514 DoGet(_REMOTE, '/instances/%s/content/6003-1010' % i) # Some private tag | |
| 515 | |
| 516 self.assertEqual('hello', DoGet(_REMOTE, '/instances/%s/content/0010-0010' % j).strip()) | |
| 517 #self.assertEqual('world', DoGet(_REMOTE, '/instances/%s/content/0010-0020' % j).strip()) | |
| 518 self.assertRaises(Exception, lambda: DoGet(_REMOTE, '/instances/%s/content/0008-1010' % j)) | |
| 519 self.assertRaises(Exception, lambda: DoGet(_REMOTE, '/instances/%s/content/6003-1010' % j)) | |
| 520 | |
| 521 | |
| 522 def test_modify_series(self): | |
| 523 # Upload 4 images from the same series | |
| 524 for i in range(4): | |
| 525 UploadInstance(_REMOTE, 'Brainix/Epi/IM-0001-000%d.dcm' % (i + 1)) | |
| 526 | |
| 527 origSeries = DoGet(_REMOTE, '/series')[0] | |
| 528 newSeries = DoPost(_REMOTE, '/series/%s/modify' % origSeries, | |
| 529 '{"Replace":{"PatientName":"Jodogne"}}', | |
| 530 'application/json')['ID'] | |
| 531 | |
| 532 self.assertEqual(origSeries, DoGet(_REMOTE, '/series/%s' % newSeries)['ModifiedFrom']) | |
| 533 instances = DoGet(_REMOTE, '/series/%s' % newSeries)['Instances'] | |
| 534 self.assertEqual(4, len(instances)) | |
| 535 for i in instances: | |
| 536 j = DoGet(_REMOTE, '/instances/%s' % i)['ModifiedFrom'] | |
| 537 self.assertEqual(newSeries, DoGet(_REMOTE, '/instances/%s' % i)['ParentSeries']) | |
| 538 self.assertEqual(origSeries, DoGet(_REMOTE, '/instances/%s' % j)['ParentSeries']) | |
| 539 | |
| 540 self.assertEqual('Jodogne', DoGet(_REMOTE, '/instances/%s/content/0010-0010' % i).strip()) | |
| 541 self.assertNotEqual('Jodogne', DoGet(_REMOTE, '/instances/%s/content/0010-0010' % j).strip()) | |
| 542 | |
| 543 | |
| 544 def test_modify_study(self): | |
| 545 # Upload 4 images from the 2 series of the same study | |
| 546 for i in range(4): | |
| 547 UploadInstance(_REMOTE, 'Brainix/Flair/IM-0001-000%d.dcm' % (i + 1)) | |
| 548 UploadInstance(_REMOTE, 'Brainix/Epi/IM-0001-000%d.dcm' % (i + 1)) | |
| 549 | |
| 550 origStudy = DoGet(_REMOTE, '/studies')[0] | |
| 551 newStudy = DoPost(_REMOTE, '/studies/%s/modify' % origStudy, | |
| 552 '{"Replace":{"PatientName":"Jodogne"}}', | |
| 553 'application/json')['ID'] | |
| 554 | |
| 555 self.assertEqual(origStudy, DoGet(_REMOTE, '/studies/%s' % newStudy)['ModifiedFrom']) | |
| 556 series = DoGet(_REMOTE, '/studies/%s' % newStudy)['Series'] | |
| 557 self.assertEqual(2, len(series)) | |
| 558 for s in series: | |
| 559 ss = DoGet(_REMOTE, '/series/%s' % s)['ModifiedFrom'] | |
| 560 self.assertEqual(newStudy, DoGet(_REMOTE, '/series/%s' % s)['ParentStudy']) | |
| 561 self.assertEqual(origStudy, DoGet(_REMOTE, '/series/%s' % ss)['ParentStudy']) | |
| 562 | |
| 563 instances = DoGet(_REMOTE, '/series/%s' % s)['Instances'] | |
| 564 for i in instances: | |
| 565 j = DoGet(_REMOTE, '/instances/%s' % i)['ModifiedFrom'] | |
| 566 self.assertEqual(s, DoGet(_REMOTE, '/instances/%s' % i)['ParentSeries']) | |
| 567 self.assertEqual(ss, DoGet(_REMOTE, '/instances/%s' % j)['ParentSeries']) | |
| 568 | |
| 569 self.assertEqual('Jodogne', DoGet(_REMOTE, '/instances/%s/content/0010-0010' % i).strip()) | |
| 570 self.assertNotEqual('Jodogne', DoGet(_REMOTE, '/instances/%s/content/0010-0010' % j).strip()) | |
| 571 | |
| 572 | |
| 573 def test_anonymize_series(self): | |
| 574 # Upload 4 images from the same series | |
| 575 for i in range(4): | |
| 576 UploadInstance(_REMOTE, 'Brainix/Epi/IM-0001-000%d.dcm' % (i + 1)) | |
| 577 | |
| 578 origSeries = DoGet(_REMOTE, '/series')[0] | |
| 579 newSeries = DoPost(_REMOTE, '/series/%s/anonymize' % origSeries, | |
| 580 '{}', | |
| 581 'application/json')['ID'] | |
| 582 | |
| 583 self.assertEqual(origSeries, DoGet(_REMOTE, '/series/%s' % newSeries)['AnonymizedFrom']) | |
| 584 instances = DoGet(_REMOTE, '/series/%s' % newSeries)['Instances'] | |
| 585 self.assertEqual(4, len(instances)) | |
| 586 for i in instances: | |
| 587 j = DoGet(_REMOTE, '/instances/%s' % i)['AnonymizedFrom'] | |
| 588 self.assertEqual(newSeries, DoGet(_REMOTE, '/instances/%s' % i)['ParentSeries']) | |
| 589 self.assertEqual(origSeries, DoGet(_REMOTE, '/instances/%s' % j)['ParentSeries']) | |
| 590 | |
| 591 DoGet(_REMOTE, '/instances/%s/content/0008-1010' % j) | |
| 592 self.assertRaises(Exception, lambda: DoGet(_REMOTE, '/instances/%s/content/0008-1010' % i)) | |
| 593 | |
| 594 | |
| 595 def test_anonymize_study(self): | |
| 596 # Upload 4 images from the 2 series of the same study | |
| 597 for i in range(4): | |
| 598 UploadInstance(_REMOTE, 'Brainix/Flair/IM-0001-000%d.dcm' % (i + 1)) | |
| 599 UploadInstance(_REMOTE, 'Brainix/Epi/IM-0001-000%d.dcm' % (i + 1)) | |
| 600 | |
| 601 origStudy = DoGet(_REMOTE, '/studies')[0] | |
| 602 newStudy = DoPost(_REMOTE,'/studies/%s/anonymize' % origStudy, | |
| 603 '{"Replace":{"PatientName":"Jodogne"}}', | |
| 604 'application/json')['ID'] | |
| 605 | |
| 606 self.assertEqual(origStudy, DoGet(_REMOTE, '/studies/%s' % newStudy)['AnonymizedFrom']) | |
| 607 series = DoGet(_REMOTE, '/studies/%s' % newStudy)['Series'] | |
| 608 self.assertEqual(2, len(series)) | |
| 609 for s in series: | |
| 610 ss = DoGet(_REMOTE, '/series/%s' % s)['AnonymizedFrom'] | |
| 611 self.assertEqual(newStudy, DoGet(_REMOTE, '/series/%s' % s)['ParentStudy']) | |
| 612 self.assertEqual(origStudy, DoGet(_REMOTE, '/series/%s' % ss)['ParentStudy']) | |
| 613 | |
| 614 instances = DoGet(_REMOTE, '/series/%s' % s)['Instances'] | |
| 615 for i in instances: | |
| 616 j = DoGet(_REMOTE, '/instances/%s' % i)['AnonymizedFrom'] | |
| 617 self.assertEqual(s, DoGet(_REMOTE, '/instances/%s' % i)['ParentSeries']) | |
| 618 self.assertEqual(ss, DoGet(_REMOTE, '/instances/%s' % j)['ParentSeries']) | |
| 619 | |
| 620 self.assertEqual('Jodogne', DoGet(_REMOTE, '/instances/%s/content/0010-0010' % i).strip()) | |
| 621 self.assertNotEqual('Jodogne', DoGet(_REMOTE, '/instances/%s/content/0010-0010' % j).strip()) | |
| 11 | 622 |
| 623 | |
| 624 | |
| 625 def test_storescu(self): | |
| 626 # Check emptiness | |
| 627 e = DoGet(_REMOTE, '/exports') | |
| 628 self.assertEqual(0, len(e['Exports'])) | |
| 629 self.assertEqual(0, e['Last']) | |
| 630 self.assertTrue(e['Done']) | |
| 631 e = DoGet(_REMOTE, '/exports?last') | |
| 632 self.assertEqual(0, len(e['Exports'])) | |
| 633 self.assertEqual(0, e['Last']) | |
| 634 self.assertTrue(e['Done']) | |
| 635 | |
| 636 # Add 1 instance | |
| 637 i = UploadInstance(_REMOTE, 'DummyCT.dcm')['ID'] | |
| 638 self.assertEqual(0, len(DoGet(_LOCAL, '/patients'))) | |
| 639 | |
| 640 # Export the instance | |
| 641 j = DoPost(_REMOTE, '/modalities/orthanctest/store', str(i), 'text/plain') # instance | |
| 642 self.assertEqual(1, len(DoGet(_LOCAL, '/patients'))) | |
| 643 self.assertEqual(1, len(DoGet(_LOCAL, '/studies'))) | |
| 644 self.assertEqual(1, len(DoGet(_LOCAL, '/series'))) | |
| 645 self.assertEqual(1, len(DoGet(_LOCAL, '/instances'))) | |
| 646 | |
| 647 e = DoGet(_REMOTE, '/exports') | |
| 648 self.assertEqual(1, len(e['Exports'])) | |
| 649 self.assertTrue(e['Done']) | |
| 650 self.assertEqual(e['Exports'][-1]['Seq'], e['Last']) | |
| 651 e = DoGet(_REMOTE, '/exports?limit=1') | |
| 652 self.assertEqual(1, len(e['Exports'])) | |
| 653 self.assertTrue(e['Done']) | |
| 654 self.assertEqual(e['Exports'][-1]['Seq'], e['Last']) | |
| 655 e = DoGet(_REMOTE, '/exports?last') | |
| 656 self.assertEqual(1, len(e['Exports'])) | |
| 657 self.assertTrue(e['Done']) | |
| 658 self.assertEqual(e['Exports'][-1]['Seq'], e['Last']) | |
| 659 seqInstance = e['Last'] | |
| 660 | |
| 661 # Export the series | |
| 662 j = DoPost(_REMOTE, '/modalities/orthanctest/store', 'f2635388-f01d497a-15f7c06b-ad7dba06-c4c599fe', 'text/plain') | |
| 663 | |
| 664 e = DoGet(_REMOTE, '/exports') | |
| 665 self.assertEqual(2, len(e['Exports'])) | |
| 666 self.assertTrue(e['Done']) | |
| 667 self.assertEqual(e['Exports'][-1]['Seq'], e['Last']) | |
| 668 seqSeries = e['Last'] | |
| 669 self.assertNotEqual(seqInstance, seqSeries) | |
| 670 e = DoGet(_REMOTE, '/exports?limit=1&since=0') | |
| 671 self.assertEqual(1, len(e['Exports'])) | |
| 672 self.assertFalse(e['Done']) | |
| 673 self.assertEqual(e['Exports'][-1]['Seq'], seqInstance) | |
| 674 e = DoGet(_REMOTE, '/exports?limit=1&since=' + str(seqInstance)) | |
| 675 self.assertEqual(1, len(e['Exports'])) | |
| 676 self.assertTrue(e['Done']) | |
| 677 self.assertEqual(e['Exports'][-1]['Seq'], seqSeries) | |
| 678 e = DoGet(_REMOTE, '/exports?last') | |
| 679 self.assertEqual(1, len(e['Exports'])) | |
| 680 self.assertTrue(e['Done']) | |
| 681 self.assertEqual(e['Exports'][-1]['Seq'], seqSeries) | |
| 682 | |
| 683 # Export the study | |
| 684 j = DoPost(_REMOTE, '/modalities/orthanctest/store', 'b9c08539-26f93bde-c81ab0d7-bffaf2cb-a4d0bdd0', 'text/plain') | |
| 685 seqStudy = DoGet(_REMOTE, '/exports')['Last'] | |
| 686 | |
| 687 # Export the patient | |
| 688 j = DoPost(_REMOTE, '/modalities/orthanctest/store', '6816cb19-844d5aee-85245eba-28e841e6-2414fae2', 'text/plain') | |
| 689 self.assertEqual(1, len(DoGet(_LOCAL, '/patients'))) | |
| 690 self.assertEqual(1, len(DoGet(_LOCAL, '/studies'))) | |
| 691 self.assertEqual(1, len(DoGet(_LOCAL, '/series'))) | |
| 692 self.assertEqual(1, len(DoGet(_LOCAL, '/instances'))) | |
| 693 | |
| 694 e = DoGet(_REMOTE, '/exports') | |
| 695 self.assertEqual(4, len(e['Exports'])) | |
| 696 self.assertTrue(e['Done']) | |
| 697 self.assertEqual(e['Exports'][-1]['Seq'], e['Last']) | |
| 698 seqPatient = e['Last'] | |
| 699 self.assertNotEqual(seqInstance, seqSeries) | |
| 700 self.assertNotEqual(seqSeries, seqStudy) | |
| 701 self.assertNotEqual(seqStudy, seqPatient) | |
| 702 self.assertTrue(seqInstance < seqSeries) | |
| 703 self.assertTrue(seqSeries < seqStudy) | |
| 704 self.assertTrue(seqStudy < seqPatient) | |
| 705 e = DoGet(_REMOTE, '/exports?limit=1&since=0') | |
| 706 self.assertEqual(1, len(e['Exports'])) | |
| 707 self.assertFalse(e['Done']) | |
| 708 self.assertEqual(e['Exports'][-1]['Seq'], seqInstance) | |
| 709 e = DoGet(_REMOTE, '/exports?limit=1&since=' + str(seqInstance)) | |
| 710 self.assertEqual(1, len(e['Exports'])) | |
| 711 self.assertFalse(e['Done']) | |
| 712 self.assertEqual(e['Exports'][-1]['Seq'], seqSeries) | |
| 713 e = DoGet(_REMOTE, '/exports?limit=1&since=' + str(seqSeries)) | |
| 714 self.assertEqual(1, len(e['Exports'])) | |
| 715 self.assertFalse(e['Done']) | |
| 716 self.assertEqual(e['Exports'][-1]['Seq'], seqStudy) | |
| 717 e = DoGet(_REMOTE, '/exports?limit=1&since=' + str(seqStudy)) | |
| 718 self.assertEqual(1, len(e['Exports'])) | |
| 719 self.assertTrue(e['Done']) | |
| 720 self.assertEqual(e['Exports'][-1]['Seq'], seqPatient) | |
| 721 e = DoGet(_REMOTE, '/exports?last') | |
| 722 self.assertEqual(1, len(e['Exports'])) | |
| 723 self.assertTrue(e['Done']) | |
| 724 self.assertEqual(e['Exports'][-1]['Seq'], seqPatient) | |
| 725 | |
| 726 | |
| 727 # Check the content of the logged information | |
| 728 e = DoGet(_REMOTE, '/exports')['Exports'] | |
| 729 | |
| 730 if 'PatientID' in e[0]: | |
| 731 # Since Orthanc 0.8.6 | |
| 732 patient = 'PatientID' | |
| 733 study = 'StudyInstanceUID' | |
| 734 series = 'SeriesInstanceUID' | |
| 735 instance = 'SOPInstanceUID' | |
| 736 else: | |
| 737 # Up to Orthanc 0.8.5 | |
| 738 patient = 'PatientId' | |
| 739 study = 'StudyInstanceUid' | |
| 740 series = 'SeriesInstanceUid' | |
| 741 instance = 'SopInstanceUid' | |
| 742 | |
| 743 for k in range(4): | |
| 744 self.assertTrue('Date' in e[k]) | |
| 745 self.assertTrue('Seq' in e[k]) | |
| 746 self.assertEqual('orthanctest', e[k]['RemoteModality']) | |
| 747 | |
| 748 self.assertEqual(10, len(e[0])) | |
| 749 self.assertEqual('Instance', e[0]['ResourceType']) | |
| 750 self.assertEqual('66a662ce-7430e543-bad44d47-0dc5a943-ec7a538d', e[0]['ID']) | |
| 751 self.assertEqual('/instances/66a662ce-7430e543-bad44d47-0dc5a943-ec7a538d', e[0]['Path']) | |
| 752 self.assertEqual('1.2.840.113619.2.176.2025.1499492.7040.1171286242.109', e[0][instance]) | |
| 753 self.assertEqual('1.2.840.113619.2.176.2025.1499492.7391.1171285944.394', e[0][series]) | |
| 754 self.assertEqual('1.2.840.113619.2.176.2025.1499492.7391.1171285944.390', e[0][study]) | |
| 755 self.assertEqual('ozp00SjY2xG', e[0][patient]) | |
| 756 | |
| 757 self.assertEqual(9, len(e[1])) | |
| 758 self.assertEqual('Series', e[1]['ResourceType']) | |
| 759 self.assertEqual('f2635388-f01d497a-15f7c06b-ad7dba06-c4c599fe', e[1]['ID']) | |
| 760 self.assertEqual('/series/f2635388-f01d497a-15f7c06b-ad7dba06-c4c599fe', e[1]['Path']) | |
| 761 self.assertEqual('1.2.840.113619.2.176.2025.1499492.7391.1171285944.394', e[1][series]) | |
| 762 self.assertEqual('1.2.840.113619.2.176.2025.1499492.7391.1171285944.390', e[1][study]) | |
| 763 self.assertEqual('ozp00SjY2xG', e[1][patient]) | |
| 764 | |
| 765 self.assertEqual(8, len(e[2])) | |
| 766 self.assertEqual('Study', e[2]['ResourceType']) | |
| 767 self.assertEqual('b9c08539-26f93bde-c81ab0d7-bffaf2cb-a4d0bdd0', e[2]['ID']) | |
| 768 self.assertEqual('/studies/b9c08539-26f93bde-c81ab0d7-bffaf2cb-a4d0bdd0', e[2]['Path']) | |
| 769 self.assertEqual('1.2.840.113619.2.176.2025.1499492.7391.1171285944.390', e[2][study]) | |
| 770 self.assertEqual('ozp00SjY2xG', e[2][patient]) | |
| 771 | |
| 772 self.assertEqual(7, len(e[3])) | |
| 773 self.assertEqual('Patient', e[3]['ResourceType']) | |
| 774 self.assertEqual('6816cb19-844d5aee-85245eba-28e841e6-2414fae2', e[3]['ID']) | |
| 775 self.assertEqual('/patients/6816cb19-844d5aee-85245eba-28e841e6-2414fae2', e[3]['Path']) | |
| 776 self.assertEqual('ozp00SjY2xG', e[3][patient]) | |
| 777 | |
| 778 DropOrthanc(_REMOTE) | |
| 779 self.assertEqual(0, len(DoGet(_REMOTE, '/exports')['Exports'])) | |
| 780 | |
| 781 | |
| 782 def test_store_peer(self): | |
| 783 self.assertEqual(0, len(DoGet(_LOCAL, '/exports')['Exports'])) | |
| 784 self.assertEqual(0, len(DoGet(_REMOTE, '/exports')['Exports'])) | |
| 785 | |
| 786 i = UploadInstance(_REMOTE, 'DummyCT.dcm')['ID'] | |
| 787 self.assertEqual(0, len(DoGet(_LOCAL, '/patients'))) | |
| 788 self.assertEqual(1, len(DoGet(_REMOTE, '/patients'))) | |
| 789 | |
| 790 j = DoPost(_REMOTE, '/peers/peer/store', str(i), 'text/plain') | |
| 791 self.assertEqual(1, len(DoGet(_LOCAL, '/patients'))) | |
| 792 self.assertEqual(1, len(DoGet(_REMOTE, '/patients'))) | |
| 793 | |
| 794 self.assertEqual(1, len(DoGet(_REMOTE, '/exports')['Exports'])) | |
| 795 | |
| 796 DropOrthanc(_REMOTE) | |
| 797 self.assertEqual(0, len(DoGet(_REMOTE, '/exports')['Exports'])) | |
| 798 | |
| 799 | |
| 800 def test_bulk_storescu(self): | |
| 801 self.assertEqual(0, len(DoGet(_LOCAL, '/patients'))) | |
| 802 | |
| 803 a = UploadInstance(_REMOTE, 'Knee/T1/IM-0001-0001.dcm') | |
| 804 b = UploadInstance(_REMOTE, 'Knee/T2/IM-0001-0001.dcm') | |
| 805 | |
| 806 j = DoPost(_REMOTE, '/modalities/orthanctest/store', [ a['ID'], b['ID'] ], 'application/json') | |
| 807 self.assertEqual(2, len(DoGet(_LOCAL, '/instances'))) | |
| 808 | |
| 809 DropOrthanc(_LOCAL) | |
| 810 | |
| 811 # Send using patient's UUID | |
| 812 self.assertEqual(0, len(DoGet(_LOCAL, '/instances'))) | |
| 813 j = DoPost(_REMOTE, '/modalities/orthanctest/store', | |
| 814 [ 'ca29faea-b6a0e17f-067743a1-8b778011-a48b2a17' ], 'application/json') | |
| 815 self.assertEqual(2, len(DoGet(_LOCAL, '/instances'))) | |
| 816 | |
| 817 | |
| 818 def test_color(self): | |
| 819 i = UploadInstance(_REMOTE, 'ColorTestMalaterre.dcm')['ID'] | |
| 820 im = GetImage(_REMOTE, '/instances/%s/preview' % i) | |
| 821 self.assertEqual("RGB", im.mode) | |
| 822 self.assertEqual(41, im.size[0]) | |
| 823 self.assertEqual(41, im.size[1]) | |
| 824 | |
| 825 # http://effbot.org/zone/pil-comparing-images.htm | |
| 13 | 826 truth = Image.open(GetDatabasePath('ColorTestMalaterre.png')) |
| 11 | 827 self.assertTrue(ImageChops.difference(im, truth).getbbox() is None) |
| 828 | |
| 829 | |
| 12 | 830 def test_faking_ruby_put(self): |
| 831 UploadInstance(_REMOTE, 'Knee/T1/IM-0001-0001.dcm') | |
| 832 UploadInstance(_REMOTE, 'Brainix/Flair/IM-0001-0001.dcm') | |
| 833 self.assertEqual(2, len(DoGet(_REMOTE, '/patients'))) | |
| 834 a = DoGet(_REMOTE, '/patients')[0] | |
| 835 b = DoGet(_REMOTE, '/patients')[1] | |
| 836 self.assertEqual(0, DoGet(_REMOTE, '/patients/%s/protected' % a)) | |
| 837 DoGet(_REMOTE, '/patients/%s/protected' % a, data = { '_method' : 'PUT' }, body = '0') | |
| 838 self.assertEqual(0, DoGet(_REMOTE, '/patients/%s/protected' % a)) | |
| 839 DoGet(_REMOTE, '/patients/%s/protected' % a, data = { '_method' : 'PUT' }, body = '1') | |
| 840 self.assertEqual(1, DoGet(_REMOTE, '/patients/%s/protected' % a)) | |
| 841 DoGet(_REMOTE, '/patients/%s/protected' % a, data = { '_method' : 'PUT' }, body = '0') | |
| 842 self.assertEqual(0, DoGet(_REMOTE, '/patients/%s/protected' % a)) | |
| 843 | |
| 844 | |
| 845 def test_faking_ruby_delete(self): | |
| 846 UploadInstance(_REMOTE, 'Knee/T1/IM-0001-0001.dcm') | |
| 847 UploadInstance(_REMOTE, 'Brainix/Flair/IM-0001-0001.dcm') | |
| 848 self.assertEqual(2, len(DoGet(_REMOTE, '/patients'))) | |
| 849 a = DoGet(_REMOTE, '/patients')[0] | |
| 850 b = DoGet(_REMOTE, '/patients')[1] | |
| 851 DoGet(_REMOTE, '/patients/%s' % a, data = { '_method' : 'DELETE' }) | |
| 852 self.assertEqual(1, len(DoGet(_REMOTE, '/patients'))) | |
| 853 DoGet(_REMOTE, '/patients/%s' % b, data = { '_method' : 'DELETE' }) | |
| 854 self.assertEqual(0, len(DoGet(_REMOTE, '/patients'))) | |
| 855 | |
| 856 | |
| 857 def test_faking_google_put(self): | |
| 858 UploadInstance(_REMOTE, 'Knee/T1/IM-0001-0001.dcm') | |
| 859 UploadInstance(_REMOTE, 'Brainix/Flair/IM-0001-0001.dcm') | |
| 860 self.assertEqual(2, len(DoGet(_REMOTE, '/patients'))) | |
| 861 a = DoGet(_REMOTE, '/patients')[0] | |
| 862 b = DoGet(_REMOTE, '/patients')[1] | |
| 863 self.assertEqual(0, DoGet(_REMOTE, '/patients/%s/protected' % a)) | |
| 864 DoPost(_REMOTE, '/patients/%s/protected' % a, headers = { 'X-HTTP-Method-Override' : 'PUT' }, data = '0') | |
| 865 self.assertEqual(0, DoGet(_REMOTE, '/patients/%s/protected' % a)) | |
| 866 DoPost(_REMOTE, '/patients/%s/protected' % a, headers = { 'X-HTTP-Method-Override' : 'PUT' }, data = '1') | |
| 867 self.assertEqual(1, DoGet(_REMOTE, '/patients/%s/protected' % a)) | |
| 868 DoPost(_REMOTE, '/patients/%s/protected' % a, headers = { 'X-HTTP-Method-Override' : 'PUT' }, data = '0') | |
| 869 self.assertEqual(0, DoGet(_REMOTE, '/patients/%s/protected' % a)) | |
| 870 | |
| 871 | |
| 872 def test_faking_google_delete(self): | |
| 873 UploadInstance(_REMOTE, 'Knee/T1/IM-0001-0001.dcm') | |
| 874 UploadInstance(_REMOTE, 'Brainix/Flair/IM-0001-0001.dcm') | |
| 875 self.assertEqual(2, len(DoGet(_REMOTE, '/patients'))) | |
| 876 a = DoGet(_REMOTE, '/patients')[0] | |
| 877 b = DoGet(_REMOTE, '/patients')[1] | |
| 878 DoPost(_REMOTE, '/patients/%s' % a, headers = { 'X-HTTP-Method-Override' : 'DELETE' }) | |
| 879 self.assertEqual(1, len(DoGet(_REMOTE, '/patients'))) | |
| 880 DoPost(_REMOTE, '/patients/%s' % b, headers = { 'X-HTTP-Method-Override' : 'DELETE' }) | |
| 881 self.assertEqual(0, len(DoGet(_REMOTE, '/patients'))) | |
| 882 | |
| 883 | |
| 884 def test_lua(self): | |
| 885 self.assertEqual(42, DoPost(_REMOTE, '/tools/execute-script', 'print(42)')) | |
| 886 self.assertTrue(IsDefinedInLua(_REMOTE, 'PrintRecursive')) | |
| 887 self.assertFalse(IsDefinedInLua(_REMOTE, 'HelloWorld')) | |
| 888 | |
| 889 | |
| 890 def test_metadata(self): | |
| 891 UploadInstance(_REMOTE, 'Knee/T1/IM-0001-0001.dcm') | |
| 892 p = DoGet(_REMOTE, '/patients')[0] | |
| 893 i = DoGet(_REMOTE, '/instances')[0] | |
| 894 | |
| 895 m = DoGet(_REMOTE, '/patients/%s/metadata' % p) | |
| 896 self.assertEqual(1, len(m)) | |
| 897 self.assertEqual('LastUpdate', m[0]) | |
| 898 | |
| 899 m = DoGet(_REMOTE, '/instances/%s/metadata' % i) | |
| 900 self.assertEqual(3, len(m)) | |
| 901 self.assertTrue('IndexInSeries' in m) | |
| 902 self.assertTrue('ReceptionDate' in m) | |
| 903 self.assertTrue('RemoteAET' in m) | |
| 904 | |
| 905 # Play with custom metadata | |
| 906 DoPut(_REMOTE, '/patients/%s/metadata/5555' % p, 'coucou') | |
| 907 m = DoGet(_REMOTE, '/patients/%s/metadata' % p) | |
| 908 self.assertEqual(2, len(m)) | |
| 909 self.assertTrue('LastUpdate' in m) | |
| 910 self.assertTrue('5555' in m) | |
| 911 self.assertEqual('coucou', DoGet(_REMOTE, '/patients/%s/metadata/5555' % p)) | |
| 912 DoPut(_REMOTE, '/patients/%s/metadata/5555' % p, 'hello') | |
| 913 self.assertEqual('hello', DoGet(_REMOTE, '/patients/%s/metadata/5555' % p)) | |
| 914 DoDelete(_REMOTE, '/patients/%s/metadata/5555' % p) | |
| 915 m = DoGet(_REMOTE, '/patients/%s/metadata' % p) | |
| 916 self.assertEqual(1, len(m)) | |
| 917 self.assertTrue('LastUpdate' in m) | |
| 13 | 918 |
| 919 | |
| 920 def test_statistics(self): | |
| 921 # Upload 16 instances | |
| 922 for i in range(4): | |
| 923 UploadInstance(_REMOTE, 'Brainix/Flair/IM-0001-000%d.dcm' % (i + 1)) | |
| 924 UploadInstance(_REMOTE, 'Brainix/Epi/IM-0001-000%d.dcm' % (i + 1)) | |
| 925 UploadInstance(_REMOTE, 'Knee/T1/IM-0001-000%d.dcm' % (i + 1)) | |
| 926 UploadInstance(_REMOTE, 'Knee/T2/IM-0001-000%d.dcm' % (i + 1)) | |
| 927 | |
| 928 s = DoGet(_REMOTE, '/statistics') | |
| 929 self.assertEqual(16, s['CountInstances']) | |
| 930 self.assertEqual(2, s['CountPatients']) | |
| 931 self.assertEqual(2, s['CountStudies']) | |
| 932 self.assertEqual(4, s['CountSeries']) | |
| 933 d = int(s['TotalUncompressedSize']) | |
| 934 | |
| 935 e = 0 | |
| 936 for patient in DoGet(_REMOTE, '/patients'): | |
| 937 s = DoGet(_REMOTE, '/patients/%s/statistics' % patient) | |
| 938 self.assertEqual(8, s['CountInstances']) | |
| 939 self.assertEqual(1, s['CountStudies']) | |
| 940 self.assertEqual(2, s['CountSeries']) | |
| 941 e += int(s['UncompressedSize']) | |
| 942 | |
| 943 for study in DoGet(_REMOTE, '/studies'): | |
| 944 s = DoGet(_REMOTE, '/studies/%s/statistics' % study) | |
| 945 self.assertEqual(8, s['CountInstances']) | |
| 946 self.assertEqual(2, s['CountSeries']) | |
| 947 e += int(s['UncompressedSize']) | |
| 948 | |
| 949 for series in DoGet(_REMOTE, '/series'): | |
| 950 s = DoGet(_REMOTE, '/series/%s/statistics' % series) | |
| 951 self.assertEqual(4, s['CountInstances']) | |
| 952 e += int(s['UncompressedSize']) | |
| 953 | |
| 954 self.assertEqual(3 * d, e) | |
| 955 | |
| 956 | |
| 957 def test_custom_attachment(self): | |
| 958 UploadInstance(_REMOTE, 'Brainix/Flair/IM-0001-0001.dcm') | |
| 959 patient = DoGet(_REMOTE, '/patients')[0] | |
| 960 instance = DoGet(_REMOTE, '/instances')[0] | |
| 961 size = int(DoGet(_REMOTE, '/patients/%s/statistics' % patient)['DiskSize']) | |
| 962 self.assertEqual(size, int(DoGet(_REMOTE, '/statistics')['TotalDiskSize'])) | |
| 963 | |
| 964 self.assertEqual(0, len(DoGet(_REMOTE, '/patients/%s/attachments' % patient))) | |
| 965 self.assertEqual(2, len(DoGet(_REMOTE, '/instances/%s/attachments' % instance))) | |
| 966 self.assertTrue('dicom' in DoGet(_REMOTE, '/instances/%s/attachments' % instance)) | |
| 967 self.assertTrue('dicom-as-json' in DoGet(_REMOTE, '/instances/%s/attachments' % instance)) | |
| 968 | |
| 969 self.assertRaises(Exception, lambda: DoPut(_REMOTE, '/patients/%s/attachments/22' % patient, 'hello')) | |
| 970 hello = 'hellohellohellohellohellohellohellohellohello' | |
| 971 DoPut(_REMOTE, '/patients/%s/attachments/1025' % patient, hello) | |
| 972 self.assertEqual(int(DoGet(_REMOTE, '/patients/%s/statistics' % patient)['DiskSize']), | |
| 973 int(DoGet(_REMOTE, '/statistics')['TotalDiskSize'])) | |
| 974 self.assertEqual(int(DoGet(_REMOTE, '/patients/%s/statistics' % patient)['DiskSize']), | |
| 975 size + int(DoGet(_REMOTE, '/patients/%s/attachments/1025/compressed-size' % patient))) | |
| 976 | |
| 977 DoPut(_REMOTE, '/patients/%s/attachments/1026' % patient, 'world') | |
| 978 self.assertEqual(int(DoGet(_REMOTE, '/patients/%s/statistics' % patient)['DiskSize']), | |
| 979 int(DoGet(_REMOTE, '/statistics')['TotalDiskSize'])) | |
| 980 self.assertEqual(int(DoGet(_REMOTE, '/patients/%s/statistics' % patient)['DiskSize']), | |
| 981 size + | |
| 982 int(DoGet(_REMOTE, '/patients/%s/attachments/1025/compressed-size' % patient)) + | |
| 983 int(DoGet(_REMOTE, '/patients/%s/attachments/1026/compressed-size' % patient))) | |
| 984 | |
| 985 self.assertEqual(2, len(DoGet(_REMOTE, '/patients/%s/attachments' % patient))) | |
| 986 self.assertEqual(hello, DoGet(_REMOTE, '/patients/%s/attachments/1025/data' % patient)) | |
| 987 self.assertEqual('world', DoGet(_REMOTE, '/patients/%s/attachments/1026/data' % patient)) | |
| 988 DoPost(_REMOTE, '/patients/%s/attachments/1025/verify-md5' % patient) | |
| 989 DoPost(_REMOTE, '/patients/%s/attachments/1026/verify-md5' % patient) | |
| 990 DoPut(_REMOTE, '/patients/%s/attachments/1026' % patient, 'world2') | |
| 991 self.assertEqual('world2', DoGet(_REMOTE, '/patients/%s/attachments/1026/data' % patient)) | |
| 992 | |
| 993 self.assertRaises(Exception, lambda: DoDelete(_REMOTE, '/instances/%s/attachments/dicom' % instance)) | |
| 994 DoDelete(_REMOTE, '/patients/%s/attachments/1025' % patient) | |
| 995 self.assertEqual(int(DoGet(_REMOTE, '/patients/%s/statistics' % patient)['DiskSize']), | |
| 996 int(DoGet(_REMOTE, '/statistics')['TotalDiskSize'])) | |
| 997 self.assertEqual(int(DoGet(_REMOTE, '/patients/%s/statistics' % patient)['DiskSize']), | |
| 998 size + int(DoGet(_REMOTE, '/patients/%s/attachments/1026/compressed-size' % patient))) | |
| 999 | |
| 1000 self.assertEqual(1, len(DoGet(_REMOTE, '/patients/%s/attachments' % patient))) | |
| 1001 DoDelete(_REMOTE, '/patients/%s/attachments/1026' % patient) | |
| 1002 self.assertEqual(0, len(DoGet(_REMOTE, '/patients/%s/attachments' % patient))) | |
| 1003 | |
| 1004 self.assertEqual(int(DoGet(_REMOTE, '/patients/%s/statistics' % patient)['DiskSize']), size) | |
| 1005 self.assertEqual(size, int(DoGet(_REMOTE, '/statistics')['TotalDiskSize'])) | |
| 1006 | |
| 1007 | |
| 1008 def test_incoming_storescu(self): | |
| 1009 self.assertEqual(0, len(DoGet(_REMOTE, '/patients'))) | |
| 45 | 1010 subprocess.check_call([ FindExecutable('storescu'), |
|
44
ffa542cce638
Toolbox.FindExecutable()
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
43
diff
changeset
|
1011 _REMOTE['Server'], str(_REMOTE['DicomPort']), |
| 13 | 1012 GetDatabasePath('ColorTestImageJ.dcm') ]) |
| 1013 self.assertEqual(1, len(DoGet(_REMOTE, '/patients'))) | |
| 1014 | |
| 1015 | |
| 1016 def test_incoming_findscu(self): | |
| 1017 def CallFindScu(args): | |
| 45 | 1018 p = subprocess.Popen([ FindExecutable('findscu'), |
|
44
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Toolbox.FindExecutable()
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
43
diff
changeset
|
1019 '-P', '-aec', _REMOTE['DicomAet'], '-aet', _LOCAL['DicomAet'], |
| 13 | 1020 _REMOTE['Server'], str(_REMOTE['DicomPort']) ] + args, |
| 1021 stderr=subprocess.PIPE) | |
| 1022 return p.communicate()[1] | |
| 1023 | |
| 1024 UploadInstance(_REMOTE, 'Multiframe.dcm') | |
| 1025 UploadInstance(_REMOTE, 'ColorTestImageJ.dcm') | |
| 1026 | |
| 1027 i = CallFindScu([ '-k', '0008,0052=PATIENT', '-k', '0010,0010' ]) | |
| 1028 patientNames = re.findall('\(0010,0010\).*?\[(.*?)\]', i) | |
| 1029 self.assertEqual(2, len(patientNames)) | |
| 1030 self.assertTrue('Test Patient BG ' in patientNames) | |
| 1031 self.assertTrue('Anonymized' in patientNames) | |
| 1032 | |
| 1033 i = CallFindScu([ '-k', '0008,0052=SERIES', '-k', '0008,0021' ]) | |
| 1034 series = re.findall('\(0008,0021\).*?\[\s*(.*?)\s*\]', i) | |
| 1035 self.assertEqual(2, len(series)) | |
| 1036 self.assertTrue('20070208' in series) | |
| 1037 self.assertTrue('19980312' in series) | |
| 1038 | |
| 1039 i = CallFindScu([ '-k', '0008,0052=SERIES', '-k', 'PatientName=Anonymized' ]) | |
| 1040 series = re.findall('\(0010,0010\).*?\[\s*(.*?)\s*\]', i) | |
| 1041 self.assertEqual(1, len(series)) | |
| 1042 | |
| 1043 # Test the "CaseSentitivePN" flag (false by default) | |
| 1044 i = CallFindScu([ '-k', '0008,0052=SERIES', '-k', 'PatientName=anonymized' ]) | |
| 1045 series = re.findall('\(0010,0010\).*?\[\s*(.*?)\s*\]', i) | |
| 1046 self.assertEqual(1, len(series)) | |
| 1047 | |
| 1048 | |
| 1049 def test_incoming_movescu(self): | |
| 1050 UploadInstance(_REMOTE, 'Multiframe.dcm') | |
| 1051 | |
| 1052 self.assertEqual(0, len(DoGet(_LOCAL, '/patients'))) | |
| 17 | 1053 CallMoveScu([ '--patient', '-k', '0008,0052=PATIENT', '-k', 'PatientID=none' ]) |
| 13 | 1054 self.assertEqual(0, len(DoGet(_LOCAL, '/patients'))) |
| 1055 CallMoveScu([ '--patient', '-k', '0008,0052=PATIENT', '-k', 'PatientID=12345678' ]) | |
| 1056 self.assertEqual(1, len(DoGet(_LOCAL, '/patients'))) | |
| 1057 | |
| 1058 | |
| 1059 def test_findscu(self): | |
| 1060 i = UploadInstance(_REMOTE, 'DummyCT.dcm')['ID'] | |
| 1061 j = UploadInstance(_REMOTE, 'Issue22.dcm')['ID'] | |
| 1062 k = UploadInstance(_REMOTE, 'ColorTestImageJ.dcm')['ID'] | |
| 1063 DoPost(_REMOTE, '/modalities/orthanctest/store', str(i), 'text/plain') | |
| 1064 | |
| 1065 # Test the "find-patient" level | |
| 1066 p = DoPost(_REMOTE, '/modalities/orthanctest/find-patient', { }) | |
| 1067 self.assertEqual(1, len(p)) | |
| 1068 self.assertEqual('ozp00SjY2xG', p[0]['PatientID']) | |
| 1069 | |
| 1070 # Test wildcards constraints. The "LO" value representation | |
| 1071 # for PatientID is always case-sensitive, but the "PN" for | |
| 1072 # PatientName might depend on the implementation: | |
| 1073 # "GenerateConfigurationForTests.py" will force it to be case | |
| 1074 # insensitive (which was the default until Orthanc 0.8.6). | |
| 1075 p = DoPost(_REMOTE, '/modalities/orthanctest/find-patient', { 'PatientName' : 'K*' }) | |
| 1076 self.assertEqual(1, len(p)) | |
| 1077 | |
| 1078 p = DoPost(_REMOTE, '/modalities/orthanctest/find-patient', { 'PatientName' : 'k*' }) | |
| 1079 self.assertEqual(1, len(p)) | |
| 1080 | |
| 1081 p = DoPost(_REMOTE, '/modalities/orthanctest/find-patient', { 'PatientID' : 'ozp*' }) | |
| 1082 self.assertEqual(1, len(p)) | |
| 1083 | |
| 1084 p = DoPost(_REMOTE, '/modalities/orthanctest/find-patient', { 'PatientID' : 'o?p*' }) | |
| 1085 self.assertEqual(1, len(p)) | |
| 1086 | |
| 1087 p = DoPost(_REMOTE, '/modalities/orthanctest/find-patient', { 'PatientID' : '0?q*' }) | |
| 1088 self.assertEqual(0, len(p)) | |
| 1089 | |
| 1090 p = DoPost(_REMOTE, '/modalities/orthanctest/find-patient', { 'PatientName' : 'B*' }) | |
| 1091 self.assertEqual(0, len(p)) | |
| 1092 | |
| 1093 p = DoPost(_REMOTE, '/modalities/orthanctest/find-patient', { 'PatientName' : 'b*' }) | |
| 1094 self.assertEqual(0, len(p)) | |
| 1095 | |
| 1096 DoPost(_REMOTE, '/modalities/orthanctest/store', str(j), 'text/plain') | |
| 1097 DoPost(_REMOTE, '/modalities/orthanctest/store', str(k), 'text/plain') | |
| 1098 DoPost(_REMOTE, '/modalities/orthanctest/find-patient', { }) | |
| 1099 self.assertEqual(3, len(DoPost(_REMOTE, '/modalities/orthanctest/find-patient', { }))) | |
| 1100 | |
| 1101 p = DoPost(_REMOTE, '/modalities/orthanctest/find-patient', { 'PatientName' : 'A*' }) | |
| 1102 self.assertEqual(2, len(p)) | |
| 1103 | |
| 1104 # Test the "find-study" level. This is the instance "ColorTestImageJ.dcm" | |
| 1105 s = DoPost(_REMOTE, '/modalities/orthanctest/find-study', { 'PatientID' : 'B9uTHKOZ' }) | |
| 1106 self.assertEqual(1, len(s)) | |
| 1107 self.assertEqual('20070208', s[0]['StudyDate']) | |
| 1108 | |
| 1109 # Test range searches | |
| 1110 t = DoPost(_REMOTE, '/modalities/orthanctest/find-study', { 'PatientID' : 'B9uTHKOZ', | |
| 1111 'StudyDate' : '-20070101' }) | |
| 1112 self.assertEqual(0, len(t)) | |
| 1113 | |
| 1114 t = DoPost(_REMOTE, '/modalities/orthanctest/find-study', { 'PatientID' : 'B9uTHKOZ', | |
| 1115 'StudyDate' : '20090101-' }) | |
| 1116 self.assertEqual(0, len(t)) | |
| 1117 | |
| 1118 t = DoPost(_REMOTE, '/modalities/orthanctest/find-study', { 'PatientID' : 'B9uTHKOZ', | |
| 1119 'StudyDate' : '20070101-' }) | |
| 1120 self.assertEqual(1, len(t)) | |
| 1121 | |
| 1122 t = DoPost(_REMOTE, '/modalities/orthanctest/find-study', { 'PatientID' : 'B9uTHKOZ', | |
| 1123 'StudyDate' : '-20090101' }) | |
| 1124 self.assertEqual(1, len(t)) | |
| 1125 | |
| 1126 t = DoPost(_REMOTE, '/modalities/orthanctest/find-study', { 'PatientID' : 'B9uTHKOZ', | |
| 1127 'StudyDate' : '20070207-20070207' }) | |
| 1128 self.assertEqual(0, len(t)) | |
| 1129 | |
| 1130 t = DoPost(_REMOTE, '/modalities/orthanctest/find-study', { 'PatientID' : 'B9uTHKOZ', | |
| 1131 'StudyDate' : '20070208-20070208' }) | |
| 1132 self.assertEqual(1, len(t)) | |
| 1133 | |
| 1134 t = DoPost(_REMOTE, '/modalities/orthanctest/find-study', { 'PatientID' : 'B9uTHKOZ', | |
| 1135 'StudyDate' : '20070209-20070209' }) | |
| 1136 self.assertEqual(0, len(t)) | |
| 1137 | |
| 1138 # Test the ModalitiesInStudy tag | |
| 1139 t = DoPost(_REMOTE, '/modalities/orthanctest/find-study', { | |
| 1140 'PatientID' : 'B9uTHKOZ', | |
| 1141 'ModalitiesInStudy' : 'US' }) | |
| 1142 self.assertEqual(0, len(t)) | |
| 1143 | |
| 1144 t = DoPost(_REMOTE, '/modalities/orthanctest/find-study', { | |
| 1145 'PatientID' : 'B9uTHKOZ', | |
| 1146 'ModalitiesInStudy' : 'CT' }) | |
| 1147 self.assertEqual(1, len(t)) | |
| 1148 | |
| 1149 t = DoPost(_REMOTE, '/modalities/orthanctest/find-study', { | |
| 1150 'PatientID' : 'B9uTHKOZ', | |
| 1151 'ModalitiesInStudy' : 'US\\CT' }) | |
| 1152 self.assertEqual(1, len(t)) | |
| 1153 | |
| 1154 # Test the "find-series" level | |
| 1155 t = DoPost(_REMOTE, '/modalities/orthanctest/find-series', { | |
| 1156 'PatientID' : 'B9uTHKOZ', | |
| 1157 'StudyInstanceUID' : s[0]['StudyInstanceUID'] }) | |
| 1158 self.assertEqual(1, len(t)) | |
| 1159 | |
| 1160 # Test "\" separator | |
| 1161 t = DoPost(_REMOTE, '/modalities/orthanctest/find-series', { | |
| 1162 'PatientID' : 'B9uTHKOZ', | |
| 1163 'StudyInstanceUID' : s[0]['StudyInstanceUID'], | |
| 1164 'Modality' : 'MR\\CT\\US' }) | |
| 1165 self.assertEqual(1, len(t)) | |
| 1166 | |
| 1167 t = DoPost(_REMOTE, '/modalities/orthanctest/find-series', { | |
| 1168 'PatientID' : 'B9uTHKOZ', | |
| 1169 'StudyInstanceUID' : s[0]['StudyInstanceUID'], | |
| 1170 'Modality' : 'MR\\US' }) | |
| 1171 self.assertEqual(0, len(t)) | |
| 1172 | |
| 1173 | |
| 1174 def test_update_modalities(self): | |
| 1175 try: | |
| 1176 DoDelete(_REMOTE, '/modalities/toto') | |
| 1177 except: | |
| 1178 pass | |
| 1179 try: | |
| 1180 DoDelete(_REMOTE, '/modalities/tata') | |
| 1181 except: | |
| 1182 pass | |
| 1183 self.assertRaises(Exception, lambda: DoGet(_REMOTE, '/modalities/toto')) | |
| 1184 DoPut(_REMOTE, '/modalities/toto', [ "STORESCP", "localhost", 2000 ]) | |
| 1185 DoPut(_REMOTE, '/modalities/tata', [ "STORESCP", "localhost", 2000, 'MedInria' ]) | |
| 1186 self.assertRaises(Exception, lambda: DoPut(_REMOTE, '/modalities/toto', [ "STORESCP", "localhost", 2000, 'MedInriaaa' ])) | |
| 1187 self.assertTrue('store' in DoGet(_REMOTE, '/modalities/toto')) | |
| 1188 self.assertTrue('store' in DoGet(_REMOTE, '/modalities/tata')) | |
| 1189 DoDelete(_REMOTE, '/modalities/toto') | |
| 1190 DoDelete(_REMOTE, '/modalities/tata') | |
| 1191 self.assertRaises(Exception, lambda: DoGet(_REMOTE, '/modalities/toto')) | |
| 1192 self.assertRaises(Exception, lambda: DoGet(_REMOTE, '/modalities/tata')) | |
| 1193 | |
| 1194 | |
| 1195 def test_update_peers(self): | |
| 1196 # curl -X PUT http://localhost:8042/peers/toto -d '["http://localhost:8042/"]' -v | |
| 1197 try: | |
| 1198 DoDelete(_REMOTE, '/peers/toto') | |
| 1199 except: | |
| 1200 pass | |
| 1201 try: | |
| 1202 DoDelete(_REMOTE, '/peers/tata') | |
| 1203 except: | |
| 1204 pass | |
| 1205 self.assertRaises(Exception, lambda: DoGet(_REMOTE, '/peers/toto')) | |
| 1206 DoPut(_REMOTE, '/peers/toto', [ 'http://localhost:8042/' ]) | |
| 1207 DoPut(_REMOTE, '/peers/tata', [ 'http://localhost:8042/', 'user', 'pass' ]) | |
| 1208 self.assertRaises(Exception, lambda: DoPut(_REMOTE, '/peers/toto', [ 'http://localhost:8042/', 'a' ])) | |
| 1209 self.assertRaises(Exception, lambda: DoPut(_REMOTE, '/peers/toto', [ 'http://localhost:8042/', 'a', 'b', 'c' ])) | |
| 1210 self.assertTrue('store' in DoGet(_REMOTE, '/peers/toto')) | |
| 1211 self.assertTrue('store' in DoGet(_REMOTE, '/peers/tata')) | |
| 1212 DoDelete(_REMOTE, '/peers/toto') | |
| 1213 DoDelete(_REMOTE, '/peers/tata') | |
| 1214 self.assertRaises(Exception, lambda: DoGet(_REMOTE, '/peers/toto')) | |
| 1215 self.assertRaises(Exception, lambda: DoGet(_REMOTE, '/peers/tata')) | |
| 1216 | |
| 1217 | |
| 1218 def test_mesterhazy_modification(self): | |
| 1219 # When I modify a series ( eg. curl | |
| 1220 # http://localhost:8042/series/uidhere/modify -X POST -d | |
| 1221 # '{"Replace":{"SeriesDate":"19990101"}}' ) the modified | |
| 1222 # series is added to a new Study, instead of the existing | |
| 1223 # Study. Fixed in Orthanc 0.7.5 | |
| 1224 | |
| 1225 u = UploadInstance(_REMOTE, 'DummyCT.dcm') | |
| 1226 study = 'b9c08539-26f93bde-c81ab0d7-bffaf2cb-a4d0bdd0' | |
| 1227 series = 'f2635388-f01d497a-15f7c06b-ad7dba06-c4c599fe' | |
| 1228 | |
| 1229 modified = DoPost(_REMOTE, '/series/%s/modify' % series, | |
| 1230 json.dumps({ "Replace" : { "SeriesDate" : "19990101" }})) | |
| 1231 | |
| 1232 self.assertEqual(study, DoGet(_REMOTE, '/series/%s' % modified['ID']) ['ParentStudy']) | |
| 1233 | |
| 1234 | |
| 1235 def test_create(self): | |
| 1236 i = DoPost(_REMOTE, '/tools/create-dicom', | |
| 1237 json.dumps({ | |
| 1238 'PatientName' : 'Jodogne', | |
| 1239 'Modality' : 'CT', | |
| 1240 'PixelData' : 'data:image/png;base64,iVBORw0KGgoAAAANSUhEUgAAAAUAAAAFCAYAAACNbyblAAAAHElEQVQI12P4//8/w38GIAXDIBKE0DHxgljNBAAO9TXL0Y4OHwAAAABJRU5ErkJggg==' # red dot in RGBA | |
| 1241 })) | |
| 1242 | |
| 1243 self.assertEqual('Jodogne', DoGet(_REMOTE, '/instances/%s/content/PatientName' % i['ID']).strip()) | |
| 1244 self.assertEqual('CT', DoGet(_REMOTE, '/instances/%s/content/Modality' % i['ID']).strip()) | |
| 1245 | |
| 1246 png = GetImage(_REMOTE, '/instances/%s/preview' % i['ID']) | |
| 1247 self.assertEqual((5, 5), png.size) | |
| 1248 | |
| 38 | 1249 j = DoGet(_REMOTE, i['Path']) |
| 1250 self.assertEqual('Instance', j['Type']) | |
| 1251 self.assertEqual(j['ID'], i['ID']) | |
| 1252 | |
| 13 | 1253 |
| 1254 def test_pilates(self): | |
| 1255 # "SCU failed error when accessing orthanc with osirix" by | |
| 1256 # Pilates Agentur (Mar 10, 2014 at 9:33 PM) | |
| 1257 i = UploadInstance(_REMOTE, 'PilatesArgenturGEUltrasoundOsiriX.dcm')['ID'] | |
| 1258 self.assertEqual(0, len(DoGet(_LOCAL, '/patients'))) | |
| 1259 j = DoPost(_REMOTE, '/modalities/orthanctest/store', str(i), 'text/plain') | |
| 1260 self.assertEqual(1, len(DoGet(_LOCAL, '/patients'))) | |
| 1261 | |
| 1262 | |
| 1263 def test_shared_tags(self): | |
| 1264 a = UploadInstance(_REMOTE, 'Knee/T1/IM-0001-0001.dcm')['ID'] | |
| 1265 b = UploadInstance(_REMOTE, 'Knee/T1/IM-0001-0002.dcm')['ID'] | |
| 1266 p = DoGet(_REMOTE, '/patients')[0] | |
| 1267 | |
| 1268 self.assertTrue('0010,0010' in DoGet(_REMOTE, '/patients/%s/shared-tags' % p)) | |
| 1269 self.assertTrue('PatientName' in DoGet(_REMOTE, '/patients/%s/shared-tags?simplify' % p)) | |
| 1270 self.assertTrue('0008,1030' in DoGet(_REMOTE, '/patients/%s/shared-tags' % p)) | |
| 1271 self.assertTrue('StudyDescription' in DoGet(_REMOTE, '/patients/%s/shared-tags?simplify' % p)) | |
| 1272 self.assertTrue('0008,103e' in DoGet(_REMOTE, '/patients/%s/shared-tags' % p)) | |
| 1273 self.assertTrue('SeriesDescription' in DoGet(_REMOTE, '/patients/%s/shared-tags?simplify' % p)) | |
| 1274 self.assertFalse('0008,0018' in DoGet(_REMOTE, '/patients/%s/shared-tags' % p)) | |
| 1275 self.assertFalse('SOPInstanceUID' in DoGet(_REMOTE, '/patients/%s/shared-tags?simplify' % p)) | |
| 1276 | |
| 1277 self.assertTrue('0008,0018' in DoGet(_REMOTE, '/instances/%s/tags' % a)) | |
| 1278 self.assertTrue('SOPInstanceUID' in DoGet(_REMOTE, '/instances/%s/tags?simplify' % a)) | |
| 1279 | |
| 1280 | |
| 1281 def test_modules(self): | |
| 1282 a = UploadInstance(_REMOTE, 'Knee/T1/IM-0001-0001.dcm')['ID'] | |
| 1283 p = DoGet(_REMOTE, '/patients')[0] | |
| 1284 s = DoGet(_REMOTE, '/studies')[0] | |
| 1285 t = DoGet(_REMOTE, '/series')[0] | |
| 1286 | |
| 1287 self.assertTrue('0010,0010' in DoGet(_REMOTE, '/patients/%s/module' % p)) | |
| 1288 self.assertTrue('PatientName' in DoGet(_REMOTE, '/patients/%s/module?simplify' % p)) | |
| 1289 self.assertTrue('0010,0010' in DoGet(_REMOTE, '/studies/%s/module-patient' % p)) | |
| 1290 self.assertTrue('PatientName' in DoGet(_REMOTE, '/studies/%s/module-patient?simplify' % p)) | |
| 1291 self.assertTrue('0008,1030' in DoGet(_REMOTE, '/studies/%s/module' % s)) | |
| 1292 self.assertTrue('StudyDescription' in DoGet(_REMOTE, '/studies/%s/module?simplify' % s)) | |
| 1293 self.assertTrue('0008,103e' in DoGet(_REMOTE, '/series/%s/module' % p)) | |
| 1294 self.assertTrue('SeriesDescription' in DoGet(_REMOTE, '/series/%s/module?simplify' % p)) | |
| 1295 self.assertTrue('0008,0018' in DoGet(_REMOTE, '/instances/%s/module' % a)) | |
| 1296 self.assertTrue('SOPInstanceUID' in DoGet(_REMOTE, '/instances/%s/module?simplify' % a)) | |
| 1297 | |
| 1298 | |
| 1299 def test_auto_directory(self): | |
| 1300 a = UploadInstance(_REMOTE, 'Knee/T1/IM-0001-0001.dcm')['ID'] | |
| 1301 self.assertTrue('now' in DoGet(_REMOTE, '/tools')) | |
| 1302 self.assertTrue('dicom-conformance' in DoGet(_REMOTE, '/tools')) | |
| 1303 self.assertTrue(len(DoGet(_REMOTE, '/tools/dicom-conformance')) > 1000) | |
| 1304 self.assertTrue('orthanctest' in DoGet(_REMOTE, '/modalities')) | |
| 1305 self.assertTrue('echo' in DoGet(_REMOTE, '/modalities/orthanctest')) | |
| 1306 self.assertTrue('find' in DoGet(_REMOTE, '/modalities/orthanctest')) | |
| 1307 self.assertTrue('find-instance' in DoGet(_REMOTE, '/modalities/orthanctest')) | |
| 1308 self.assertTrue('find-patient' in DoGet(_REMOTE, '/modalities/orthanctest')) | |
| 1309 self.assertTrue('find-series' in DoGet(_REMOTE, '/modalities/orthanctest')) | |
| 1310 self.assertTrue('find-study' in DoGet(_REMOTE, '/modalities/orthanctest')) | |
| 1311 self.assertTrue('store' in DoGet(_REMOTE, '/modalities/orthanctest')) | |
| 1312 self.assertTrue('store' in DoGet(_REMOTE, '/peers/peer')) | |
| 1313 self.assertTrue('matlab' in DoGet(_REMOTE, '/instances/%s/frames/0' % a)) | |
| 1314 self.assertRaises(Exception, lambda: DoGet(_REMOTE, '/tools/nope')) | |
| 28 | 1315 self.assertRaises(Exception, lambda: DoGet(_REMOTE, '/nope')) |
| 1316 self.assertRaises(Exception, lambda: DoGet(_REMOTE, '/nope/nope.html')) | |
| 1317 self.assertEqual(404, DoGetRaw(_REMOTE, '/nope')[0].status) | |
| 1318 self.assertEqual(404, DoGetRaw(_REMOTE, '/nope/nope.html')[0].status) | |
| 13 | 1319 |
| 1320 | |
| 1321 def test_echo(self): | |
| 1322 DoPost(_REMOTE, '/modalities/orthanctest/echo') | |
| 1323 | |
| 1324 | |
| 1325 def test_xml(self): | |
| 1326 json = DoGet(_REMOTE, '/tools', headers = { 'accept' : 'application/json' }) | |
| 1327 xml = minidom.parseString(DoGet(_REMOTE, '/tools', headers = { 'accept' : 'application/xml' })) | |
| 1328 items = xml.getElementsByTagName('root')[0].getElementsByTagName('item') | |
| 1329 self.assertEqual(len(items), len(json)) | |
| 1330 | |
| 1331 self.assertTrue('dicom-conformance' in json) | |
| 1332 | |
| 1333 ok = False | |
| 1334 for i in items: | |
| 1335 if i.childNodes[0].data == 'dicom-conformance': | |
| 1336 ok = True | |
| 1337 self.assertTrue(ok) | |
| 1338 | |
| 1339 | |
|
46
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explicit GoogleCode source
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
45
diff
changeset
|
1340 def test_googlecode_issue_16(self): |
| 13 | 1341 i = UploadInstance(_REMOTE, 'Issue16.dcm')['ID'] |
| 1342 t = DoGet(_REMOTE, '/instances/%s/tags?simplify' % i)['FrameIncrementPointer'] | |
| 1343 self.assertEqual('0018,1063', t) | |
| 1344 | |
| 1345 | |
|
46
85b2e36ed392
explicit GoogleCode source
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
45
diff
changeset
|
1346 def test_googlecode_issue_22(self): |
| 13 | 1347 s = UploadInstance(_REMOTE, 'Issue22.dcm')['ID'] |
| 1348 a = [ | |
| 1349 "f804691f62197040438f4627c6b994f1", # Frame 0 | |
| 1350 "c69eee9a51eea3e8611e82e578897254", | |
| 1351 "315666be83e2d0111c77bc0996d84901", | |
| 1352 "3e27aa959d911172c48a1436443c72b1", | |
| 1353 "958642c9e7e9d232d3869faff546058c", | |
| 1354 "5e7ea8e3e4230cae707d143481355c59", | |
| 1355 "eda37f83558d858a596175aed8b2ad47", | |
| 1356 "486713bd2895c4ecbe0e97715ac7f80a", | |
| 1357 "091ef729eb169e67da8a0faa9631f9a8", | |
| 1358 "5aa2b8c7ffe0a483efaa8e12417686ca", | |
| 1359 "e2f39e85896fe58876654b94cd0b5013", | |
| 1360 "6fd2129e4950abbe1be053bc814d5da8", | |
| 1361 "c3331a8ba7a757f3d423735ab7fa81f9", | |
| 1362 "746f808582156734dd6b6fdfd3a0b72c", | |
| 1363 "8075ea2b227a70c60ea6b7b75a6bb190", | |
| 1364 "806b8b3e300c615099c11a5ec23465aa", | |
| 1365 "7c836aa298ba6eef96434579af631a11", | |
| 1366 "a0357dc9f4f72d73a885c33d7c287446", | |
| 1367 "f25ba3be1cc7d7fad95706adc199ea7d", | |
| 1368 "8b114c526b8cbed6cad8a3248b7b480c", | |
| 1369 "44e6670f127e612a2b4aa60a0d207698", | |
| 1370 "b8945f90fe02facf2ace24ca1ecbe0a5", | |
| 1371 "95c796c2fa8f59018b15cf2987b1f79b", | |
| 1372 "ce0a51ab30224205b44920221dc27351", # Frame 23 | |
| 1373 ] | |
| 1374 | |
| 1375 self.assertEqual(24, len(DoGet(_REMOTE, '/instances/%s/frames' % s))) | |
| 1376 self.assertRaises(Exception, lambda: DoGet(_REMOTE, '/instances/%s/frames/24/preview' % s)) | |
| 1377 | |
| 1378 for i in range(len(a)): | |
| 1379 self.assertEqual(a[i], ComputeMD5(DoGet(_REMOTE, '/instances/%s/frames/%d/preview' % (s, i)))) | |
| 1380 | |
| 1381 | |
|
46
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explicit GoogleCode source
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
45
diff
changeset
|
1382 def test_googlecode_issue_19(self): |
|
21
2a29bcff60a7
tests of image decoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
18
diff
changeset
|
1383 # This is an image with "YBR_FULL" photometric interpretation, it is not supported by Orthanc |
| 13 | 1384 # gdcmconv -i /home/jodogne/DICOM/GdcmDatabase/US_DataSet/HDI5000_US/3EAF5E01 -w -o Issue19.dcm |
| 1385 | |
| 1386 a = UploadInstance(_REMOTE, 'Issue19.dcm')['ID'] | |
|
21
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tests of image decoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
18
diff
changeset
|
1387 self.assertRaises(Exception, lambda: DoGet(_REMOTE, '/instances/941ad3c8-05d05b88-560459f9-0eae0e20-6cddd533/preview')) |
| 13 | 1388 |
| 1389 | |
|
46
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explicit GoogleCode source
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
45
diff
changeset
|
1390 def test_googlecode_issue_37(self): |
| 13 | 1391 # Same test for issues 35 and 37. Fixed in Orthanc 0.9.1 |
| 1392 u = UploadInstance(_REMOTE, 'Beaufix/IM-0001-0001.dcm')['ID'] | |
| 1393 | |
| 1394 a = DoPost(_REMOTE, '/tools/find', { 'Level' : 'Series', | |
| 1395 'CaseSensitive' : True, | |
| 1396 'Query' : { 'StationName' : 'SMR4-MP3' }}) | |
| 1397 self.assertEqual(1, len(a)) | |
| 14 | 1398 |
| 1399 | |
| 1400 def test_rest_find(self): | |
| 1401 # Upload 8 instances | |
| 1402 for i in range(2): | |
| 1403 UploadInstance(_REMOTE, 'Brainix/Flair/IM-0001-000%d.dcm' % (i + 1)) | |
| 1404 UploadInstance(_REMOTE, 'Brainix/Epi/IM-0001-000%d.dcm' % (i + 1)) | |
| 1405 UploadInstance(_REMOTE, 'Knee/T1/IM-0001-000%d.dcm' % (i + 1)) | |
| 1406 UploadInstance(_REMOTE, 'Knee/T2/IM-0001-000%d.dcm' % (i + 1)) | |
| 1407 | |
| 1408 a = DoPost(_REMOTE, '/tools/find', { 'Level' : 'Patient', | |
| 1409 'CaseSensitive' : False, | |
| 1410 'Query' : { 'PatientName' : '*n*' }}) | |
| 1411 self.assertEqual(2, len(a)) | |
| 1412 | |
| 1413 a = DoPost(_REMOTE, '/tools/find', { 'Level' : 'Patient', | |
| 1414 'CaseSensitive' : True, | |
| 1415 'Query' : { 'PatientName' : '*n*' }}) | |
| 1416 self.assertEqual(0, len(a)) | |
| 1417 | |
| 1418 a = DoPost(_REMOTE, '/tools/find', { 'Expand' : True, | |
| 1419 'Level' : 'Patient', | |
| 1420 'CaseSensitive' : False, | |
| 1421 'Query' : { 'PatientName' : '*ne*' }}) | |
| 1422 self.assertEqual(1, len(a)) | |
| 1423 self.assertEqual('20080822', a[0]['MainDicomTags']['PatientBirthDate']) | |
| 1424 | |
| 1425 a = DoPost(_REMOTE, '/tools/find', { 'Level' : 'Patient', | |
| 1426 'CaseSensitive' : True, | |
| 1427 'Query' : { 'PatientName' : '*ne*' }}) | |
| 1428 self.assertEqual(0, len(a)) | |
| 1429 | |
| 1430 a = DoPost(_REMOTE, '/tools/find', { 'Level' : 'Study', | |
| 1431 'CaseSensitive' : True, | |
| 1432 'Query' : { 'PatientName' : '*NE*' }}) | |
| 1433 self.assertEqual(1, len(a)) | |
| 1434 | |
| 1435 a = DoPost(_REMOTE, '/tools/find', { 'Level' : 'Series', | |
| 1436 'CaseSensitive' : True, | |
| 1437 'Query' : { 'PatientName' : '*NE*' }}) | |
| 1438 self.assertEqual(2, len(a)) | |
| 1439 | |
| 1440 a = DoPost(_REMOTE, '/tools/find', { 'Level' : 'Instance', | |
| 1441 'CaseSensitive' : True, | |
| 1442 'Query' : { 'PatientName' : '*NE*' }}) | |
| 1443 self.assertEqual(4, len(a)) | |
| 1444 | |
| 1445 a = DoPost(_REMOTE, '/tools/find', { 'Level' : 'Patient', 'Query' : { }}) | |
| 1446 self.assertEqual(2, len(a)) | |
| 1447 | |
| 1448 a = DoPost(_REMOTE, '/tools/find', { 'Level' : 'Study', 'Query' : { }}) | |
| 1449 self.assertEqual(2, len(a)) | |
| 1450 | |
| 1451 a = DoPost(_REMOTE, '/tools/find', { 'Level' : 'Series', 'Query' : { }}) | |
| 1452 self.assertEqual(4, len(a)) | |
| 1453 | |
| 1454 a = DoPost(_REMOTE, '/tools/find', { 'Level' : 'Instance', 'Query' : { }}) | |
| 1455 self.assertEqual(8, len(a)) | |
| 1456 | |
| 1457 | |
| 1458 def test_rest_query_retrieve(self): | |
| 1459 self.assertEqual(0, len(DoGet(_REMOTE, '/patients'))) | |
| 1460 | |
| 1461 # Upload 8 instances | |
| 1462 for i in range(2): | |
| 1463 UploadInstance(_REMOTE, 'Brainix/Flair/IM-0001-000%d.dcm' % (i + 1)) | |
| 1464 UploadInstance(_REMOTE, 'Brainix/Epi/IM-0001-000%d.dcm' % (i + 1)) | |
| 1465 UploadInstance(_REMOTE, 'Knee/T1/IM-0001-000%d.dcm' % (i + 1)) | |
| 1466 UploadInstance(_REMOTE, 'Knee/T2/IM-0001-000%d.dcm' % (i + 1)) | |
| 1467 | |
| 1468 self.assertEqual(2, len(DoGet(_REMOTE, '/patients'))) | |
| 1469 for p in DoGet(_REMOTE, '/patients'): | |
| 1470 DoPost(_REMOTE, '/modalities/orthanctest/store', p) | |
| 1471 DoDelete(_REMOTE, '/patients/%s' % p) | |
| 1472 | |
| 1473 for q in DoGet(_REMOTE, '/queries'): | |
| 1474 DoDelete(_REMOTE, '/queries/%s' % q) | |
| 1475 | |
| 1476 self.assertEqual(0, len(DoGet(_REMOTE, '/patients'))) | |
| 1477 self.assertEqual(0, len(DoGet(_REMOTE, '/queries'))) | |
| 1478 a = DoPost(_REMOTE, '/modalities/orthanctest/query', { 'Level' : 'Series', | |
| 27 | 1479 'Query' : { |
| 1480 'PatientName' : '*NE*', | |
| 1481 'StudyDate' : '*', | |
| 1482 }})['ID'] | |
| 14 | 1483 self.assertEqual(1, len(DoGet(_REMOTE, '/queries'))) |
| 1484 | |
| 1485 b = DoGet(_REMOTE, '/queries/%s' % a) | |
| 1486 self.assertTrue('answers' in b) | |
| 1487 self.assertTrue('level' in b) | |
| 1488 self.assertTrue('modality' in b) | |
| 1489 self.assertTrue('query' in b) | |
| 1490 self.assertTrue('retrieve' in b) | |
| 1491 self.assertEqual('Series', DoGet(_REMOTE, '/queries/%s/level' % a)) | |
| 1492 self.assertEqual('orthanctest', DoGet(_REMOTE, '/queries/%s/modality' % a)) | |
| 1493 | |
| 1494 q = DoGet(_REMOTE, '/queries/%s/query?simplify' % a) | |
| 27 | 1495 self.assertEqual(2, len(q)) |
| 14 | 1496 self.assertTrue('PatientName' in q) |
| 27 | 1497 self.assertTrue('StudyDate' in q) |
| 14 | 1498 self.assertEqual('*NE*', q['PatientName']) |
| 27 | 1499 self.assertEqual('*', q['StudyDate']) |
| 14 | 1500 |
| 1501 self.assertEqual(2, len(DoGet(_REMOTE, '/queries/%s/answers' % a))) | |
| 1502 | |
| 1503 s = DoGet(_REMOTE, '/queries/%s/answers/0' % a) | |
| 1504 self.assertTrue('content' in s) | |
| 1505 self.assertTrue('retrieve' in s) | |
| 1506 | |
| 1507 s = DoGet(_REMOTE, '/queries/%s/answers/0/content?simplify' % a) | |
| 1508 self.assertEqual('887', s['PatientID']) | |
| 1509 self.assertEqual('2.16.840.1.113669.632.20.121711.10000160881', s['StudyInstanceUID']) | |
| 1510 | |
| 1511 self.assertEqual(0, len(DoGet(_REMOTE, '/patients'))) | |
| 1512 DoPost(_REMOTE, '/queries/%s/answers/0/retrieve' % a, 'ORTHANC') | |
| 1513 self.assertEqual(1, len(DoGet(_REMOTE, '/patients'))) | |
| 1514 self.assertEqual(1, len(DoGet(_REMOTE, '/studies'))) | |
| 1515 self.assertEqual(1, len(DoGet(_REMOTE, '/series'))) | |
| 1516 self.assertEqual(2, len(DoGet(_REMOTE, '/instances'))) | |
| 1517 | |
| 1518 DoPost(_REMOTE, '/queries/%s/answers/1/retrieve' % a, 'ORTHANC') | |
| 1519 self.assertEqual(1, len(DoGet(_REMOTE, '/patients'))) | |
| 1520 self.assertEqual(1, len(DoGet(_REMOTE, '/studies'))) | |
| 1521 self.assertEqual(2, len(DoGet(_REMOTE, '/series'))) | |
| 1522 self.assertEqual(4, len(DoGet(_REMOTE, '/instances'))) | |
| 1523 | |
| 1524 DoDelete(_REMOTE, '/queries/%s' % a) | |
| 1525 self.assertEqual(0, len(DoGet(_REMOTE, '/queries'))) | |
| 1526 | |
| 1527 | |
| 1528 def test_parent(self): | |
| 1529 u = UploadInstance(_REMOTE, 'DummyCT.dcm')['ID'] | |
| 1530 patient = '6816cb19-844d5aee-85245eba-28e841e6-2414fae2' | |
| 1531 study = 'b9c08539-26f93bde-c81ab0d7-bffaf2cb-a4d0bdd0' | |
| 1532 series = 'f2635388-f01d497a-15f7c06b-ad7dba06-c4c599fe' | |
| 1533 instance = '66a662ce-7430e543-bad44d47-0dc5a943-ec7a538d' | |
| 1534 self.assertEqual(instance, u); | |
| 1535 | |
| 1536 a = DoGet(_REMOTE, '/studies/%s/patient' % study) | |
| 1537 self.assertEqual('Patient', a['Type']) | |
| 1538 self.assertEqual(patient, a['ID']) | |
| 1539 | |
| 1540 a = DoGet(_REMOTE, '/series/%s/patient' % series) | |
| 1541 self.assertEqual('Patient', a['Type']) | |
| 1542 self.assertEqual(patient, a['ID']) | |
| 1543 | |
| 1544 a = DoGet(_REMOTE, '/series/%s/study' % series) | |
| 1545 self.assertEqual('Study', a['Type']) | |
| 1546 self.assertEqual(study, a['ID']) | |
| 1547 | |
| 1548 a = DoGet(_REMOTE, '/instances/%s/patient' % instance) | |
| 1549 self.assertEqual('Patient', a['Type']) | |
| 1550 self.assertEqual(patient, a['ID']) | |
| 1551 | |
| 1552 a = DoGet(_REMOTE, '/instances/%s/study' % instance) | |
| 1553 self.assertEqual('Study', a['Type']) | |
| 1554 self.assertEqual(study, a['ID']) | |
| 1555 | |
| 1556 a = DoGet(_REMOTE, '/instances/%s/series' % instance) | |
| 1557 self.assertEqual('Series', a['Type']) | |
| 1558 self.assertEqual(series, a['ID']) | |
| 1559 | |
| 1560 | |
| 1561 def test_shanon(self): | |
| 1562 def Anonymize(instance, replacements = {}): | |
| 1563 return DoPost(_REMOTE, '/instances/%s/anonymize' % instance, { 'Replace' : replacements }, 'application/json') | |
| 1564 | |
| 1565 self.assertEqual(0, len(DoGet(_REMOTE, '/instances'))) | |
| 1566 u = UploadInstance(_REMOTE, 'DummyCT.dcm')['ID'] | |
| 1567 self.assertEqual(1, len(DoGet(_REMOTE, '/instances'))) | |
| 1568 | |
| 1569 tags = [ 'PatientID', 'StudyInstanceUID', 'SeriesInstanceUID', 'SOPInstanceUID', 'DeidentificationMethod' ] | |
| 1570 ids = [ 'ozp00SjY2xG', | |
| 1571 '1.2.840.113619.2.176.2025.1499492.7391.1171285944.390', | |
| 1572 '1.2.840.113619.2.176.2025.1499492.7391.1171285944.394', | |
| 1573 '1.2.840.113619.2.176.2025.1499492.7040.1171286242.109' ] | |
| 1574 | |
| 1575 a = ExtractDicomTags(Anonymize(u), tags) | |
| 1576 for i in range(4): | |
| 1577 self.assertNotEqual(ids[i], a[i]) | |
| 1578 self.assertTrue(a[4].startswith('Orthanc')) | |
| 1579 | |
| 1580 a = ExtractDicomTags(Anonymize(u, { 'PatientName' : 'toto' }), tags) | |
| 1581 for i in range(4): | |
| 1582 self.assertNotEqual(ids[i], a[i]) | |
| 1583 self.assertFalse(a[4].startswith('Orthanc')) | |
| 1584 | |
| 1585 a = ExtractDicomTags(Anonymize(u, { 'SOPInstanceUID' : 'instance' }), tags) | |
| 1586 self.assertEqual('instance', a[3]) | |
| 1587 self.assertFalse(a[4].startswith('Orthanc')) | |
| 1588 | |
| 1589 a = ExtractDicomTags(Anonymize(u, { 'SeriesInstanceUID' : 'series' }), tags) | |
| 1590 self.assertEqual('series', a[2]) | |
| 1591 self.assertFalse(a[4].startswith('Orthanc')) | |
| 1592 | |
| 1593 a = ExtractDicomTags(Anonymize(u, { 'StudyInstanceUID' : 'study' }), tags) | |
| 1594 self.assertEqual('study', a[1]) | |
| 1595 self.assertFalse(a[4].startswith('Orthanc')) | |
| 1596 | |
| 1597 a = ExtractDicomTags(Anonymize(u, { 'PatientID' : 'patient' }), tags) | |
| 1598 self.assertEqual('patient', a[0]) | |
| 1599 self.assertFalse(a[4].startswith('Orthanc')) | |
| 1600 | |
| 1601 a = ExtractDicomTags(Anonymize(u, { 'PatientID' : 'patient', | |
| 1602 'StudyInstanceUID' : 'study', | |
| 1603 'SeriesInstanceUID' : 'series', | |
| 1604 'SOPInstanceUID' : 'instance' }), tags) | |
| 1605 self.assertEqual('patient', a[0]) | |
| 1606 self.assertFalse(a[4].startswith('Orthanc')) | |
| 1607 | |
| 1608 self.assertEqual(1, len(DoGet(_REMOTE, '/instances'))) | |
| 1609 | |
| 1610 | |
| 1611 def test_shanon_2(self): | |
| 1612 def Modify(instance, replacements = {}): | |
| 1613 return DoPost(_REMOTE, '/instances/%s/modify' % instance, { 'Replace' : replacements }, 'application/json') | |
| 1614 | |
| 1615 self.assertEqual(0, len(DoGet(_REMOTE, '/instances'))) | |
| 1616 u = UploadInstance(_REMOTE, 'DummyCT.dcm')['ID'] | |
| 1617 self.assertEqual(1, len(DoGet(_REMOTE, '/instances'))) | |
| 1618 | |
| 1619 tags = [ 'PatientID', 'StudyInstanceUID', 'SeriesInstanceUID', 'SOPInstanceUID', 'DeidentificationMethod' ] | |
| 1620 ids = [ 'ozp00SjY2xG', | |
| 1621 '1.2.840.113619.2.176.2025.1499492.7391.1171285944.390', | |
| 1622 '1.2.840.113619.2.176.2025.1499492.7391.1171285944.394', | |
| 1623 '1.2.840.113619.2.176.2025.1499492.7040.1171286242.109' ] | |
| 1624 | |
| 1625 a = ExtractDicomTags(Modify(u), tags) | |
| 1626 self.assertEqual(ids[0], a[0]) | |
| 1627 self.assertEqual(ids[1], a[1]) | |
| 1628 self.assertEqual(ids[2], a[2]) | |
| 1629 self.assertNotEqual(ids[3], a[3]) | |
| 1630 self.assertEqual(0, len(a[4])) | |
| 1631 | |
| 1632 a = ExtractDicomTags(Modify(u, { 'SOPInstanceUID' : 'instance' }), tags) | |
| 1633 self.assertEqual(ids[0], a[0]) | |
| 1634 self.assertEqual(ids[1], a[1]) | |
| 1635 self.assertEqual(ids[2], a[2]) | |
| 1636 self.assertEqual('instance', a[3]) | |
| 1637 | |
| 1638 a = ExtractDicomTags(Modify(u, { 'SeriesInstanceUID' : 'series' }), tags) | |
| 1639 self.assertEqual(ids[0], a[0]) | |
| 1640 self.assertEqual(ids[1], a[1]) | |
| 1641 self.assertEqual('series', a[2]) | |
| 1642 self.assertNotEqual(ids[3], a[3]) | |
| 1643 | |
| 1644 a = ExtractDicomTags(Modify(u, { 'StudyInstanceUID' : 'study' }), tags) | |
| 1645 self.assertEqual(ids[0], a[0]) | |
| 1646 self.assertEqual('study', a[1]) | |
| 1647 self.assertNotEqual(ids[2], a[2]) | |
| 1648 self.assertNotEqual(ids[3], a[3]) | |
| 1649 | |
| 1650 a = ExtractDicomTags(Modify(u, { 'PatientID' : 'patient' }), tags) | |
| 1651 self.assertEqual('patient', a[0]) | |
| 1652 self.assertNotEqual(ids[1], a[1]) | |
| 1653 self.assertNotEqual(ids[2], a[2]) | |
| 1654 self.assertNotEqual(ids[3], a[3]) | |
| 1655 | |
| 1656 a = ExtractDicomTags(Modify(u, { 'PatientID' : 'patient', | |
| 1657 'StudyInstanceUID' : 'study', | |
| 1658 'SeriesInstanceUID' : 'series', | |
| 1659 'SOPInstanceUID' : 'instance' }), tags) | |
| 1660 self.assertEqual('patient', a[0]) | |
| 1661 self.assertEqual('study', a[1]) | |
| 1662 self.assertEqual('series', a[2]) | |
| 1663 self.assertEqual('instance', a[3]) | |
| 1664 | |
| 1665 self.assertEqual(1, len(DoGet(_REMOTE, '/instances'))) | |
| 1666 | |
| 1667 | |
| 1668 def test_instances_tags(self): | |
| 1669 a = UploadInstance(_REMOTE, 'Knee/T1/IM-0001-0001.dcm')['ID'] | |
| 1670 b = UploadInstance(_REMOTE, 'Knee/T2/IM-0001-0001.dcm')['ID'] | |
| 1671 #a = UploadInstance(_REMOTE, 'Cardiac/MR.X.1.2.276.0.7230010.3.1.4.2831157719.2256.1336386937.676343')['ID'] | |
| 1672 #b = UploadInstance(_REMOTE, 'Cardiac/MR.X.1.2.276.0.7230010.3.1.4.2831157719.2256.1336386925.676329')['ID'] | |
| 1673 | |
| 1674 i = DoGet(_REMOTE, '/patients/%s/instances-tags?simplify' % DoGet(_REMOTE, '/patients')[0]) | |
| 1675 self.assertEqual(2, len(i)) | |
| 1676 self.assertEqual('887', i[i.keys()[0]]['PatientID']) | |
| 1677 self.assertEqual('887', i[i.keys()[1]]['PatientID']) | |
| 1678 | |
| 1679 i = DoGet(_REMOTE, '/patients/%s/instances-tags?simplify' % DoGet(_REMOTE, '/studies')[0]) | |
| 1680 self.assertEqual(2, len(i)) | |
| 1681 self.assertEqual('887', i[i.keys()[0]]['PatientID']) | |
| 1682 self.assertEqual('887', i[i.keys()[1]]['PatientID']) | |
| 1683 | |
| 1684 self.assertEqual(2, len(DoGet(_REMOTE, '/series'))) | |
| 1685 i = DoGet(_REMOTE, '/patients/%s/instances-tags?simplify' % DoGet(_REMOTE, '/series')[0]) | |
| 1686 self.assertEqual(1, len(i)) | |
| 1687 self.assertEqual('887', i[i.keys()[0]]['PatientID']) | |
| 1688 | |
| 1689 i = DoGet(_REMOTE, '/patients/%s/instances-tags?simplify' % DoGet(_REMOTE, '/series')[1]) | |
| 1690 self.assertEqual(1, len(i)) | |
| 1691 self.assertEqual('887', i[i.keys()[0]]['PatientID']) | |
| 1692 | |
| 1693 | |
| 1694 def test_lookup(self): | |
| 1695 a = DoPost(_REMOTE, '/tools/lookup', 'ozp00SjY2xG') | |
| 1696 self.assertEqual(0, len(a)) | |
| 1697 | |
| 1698 UploadInstance(_REMOTE, 'DummyCT.dcm') | |
| 1699 | |
| 1700 a = DoPost(_REMOTE, '/tools/lookup', 'ozp00SjY2xG') | |
| 1701 self.assertEqual(1, len(a)) | |
| 1702 self.assertEqual('Patient', a[0]['Type']) | |
| 1703 self.assertEqual('6816cb19-844d5aee-85245eba-28e841e6-2414fae2', a[0]['ID']) | |
| 1704 self.assertEqual('/patients/%s' % a[0]['ID'], a[0]['Path']) | |
| 1705 | |
| 1706 a = DoPost(_REMOTE, '/tools/lookup', '1.2.840.113619.2.176.2025.1499492.7391.1171285944.390') | |
| 1707 self.assertEqual(1, len(a)) | |
| 1708 self.assertEqual('Study', a[0]['Type']) | |
| 1709 self.assertEqual('b9c08539-26f93bde-c81ab0d7-bffaf2cb-a4d0bdd0', a[0]['ID']) | |
| 1710 self.assertEqual('/studies/%s' % a[0]['ID'], a[0]['Path']) | |
| 1711 | |
| 1712 a = DoPost(_REMOTE, '/tools/lookup', '1.2.840.113619.2.176.2025.1499492.7391.1171285944.394') | |
| 1713 self.assertEqual(1, len(a)) | |
| 1714 self.assertEqual('Series', a[0]['Type']) | |
| 1715 self.assertEqual('f2635388-f01d497a-15f7c06b-ad7dba06-c4c599fe', a[0]['ID']) | |
| 1716 self.assertEqual('/series/%s' % a[0]['ID'], a[0]['Path']) | |
| 1717 | |
| 1718 a = DoPost(_REMOTE, '/tools/lookup', '1.2.840.113619.2.176.2025.1499492.7040.1171286242.109') | |
| 1719 self.assertEqual(1, len(a)) | |
| 1720 self.assertEqual('Instance', a[0]['Type']) | |
| 1721 self.assertEqual('66a662ce-7430e543-bad44d47-0dc5a943-ec7a538d', a[0]['ID']) | |
| 1722 self.assertEqual('/instances/%s' % a[0]['ID'], a[0]['Path']) | |
| 1723 | |
| 1724 DropOrthanc(_REMOTE) | |
| 1725 a = DoPost(_REMOTE, '/tools/lookup', '3113719P') | |
| 1726 self.assertEqual(0, len(a)) | |
| 1727 | |
| 15 | 1728 |
| 1729 def test_autorouting(self): | |
| 1730 knee1 = 'Knee/T1/IM-0001-0001.dcm' | |
| 1731 knee2 = 'Knee/T2/IM-0001-0002.dcm' | |
| 1732 other = 'Brainix/Flair/IM-0001-0001.dcm' | |
| 1733 | |
| 1734 # Check that this version is >= 0.8.0 | |
| 1735 self.assertTrue(IsDefinedInLua(_REMOTE, '_InitializeJob')) | |
| 1736 self.assertTrue('orthanctest' in DoGet(_REMOTE, '/modalities')) | |
| 1737 | |
| 1738 UploadInstance(_REMOTE, knee1) | |
| 1739 self.assertEqual(0, len(DoGet(_LOCAL, '/instances'))) | |
| 1740 | |
| 1741 DropOrthanc(_REMOTE) | |
| 1742 DropOrthanc(_LOCAL) | |
| 1743 InstallLuaScript('Lua/Autorouting.lua') | |
| 1744 UploadInstance(_REMOTE, knee1) | |
| 1745 UploadInstance(_REMOTE, knee2) | |
| 1746 UploadInstance(_REMOTE, other) | |
| 1747 WaitEmpty(_REMOTE) | |
| 1748 UninstallLuaCallbacks() | |
| 1749 self.assertEqual(3, len(DoGet(_LOCAL, '/instances'))) | |
| 1750 | |
| 1751 DropOrthanc(_REMOTE) | |
| 1752 DropOrthanc(_LOCAL) | |
| 1753 InstallLuaScript('Lua/AutoroutingConditional.lua') | |
| 1754 UploadInstance(_REMOTE, knee1) | |
| 1755 UploadInstance(_REMOTE, knee2) | |
| 1756 UploadInstance(_REMOTE, other) | |
| 1757 WaitEmpty(_REMOTE) | |
| 1758 UninstallLuaCallbacks() | |
| 1759 self.assertEqual(2, len(DoGet(_LOCAL, '/instances'))) | |
| 1760 | |
| 1761 DropOrthanc(_REMOTE) | |
| 1762 DropOrthanc(_LOCAL) | |
| 1763 InstallLuaScript('Lua/AutoroutingModification.lua') | |
| 1764 UploadInstance(_REMOTE, knee1) | |
| 1765 WaitEmpty(_REMOTE) | |
| 1766 UninstallLuaCallbacks() | |
| 1767 i = DoGet(_LOCAL, '/instances') | |
| 1768 self.assertEqual(1, len(i)) | |
| 1769 | |
| 1770 with tempfile.NamedTemporaryFile(delete = True) as f: | |
| 1771 f.write(DoGet(_LOCAL, '/instances/%s/file' % i[0])) | |
| 1772 f.flush() | |
| 45 | 1773 routed = subprocess.check_output([ FindExecutable('dcm2xml'), f.name ]) |
| 15 | 1774 self.assertEqual('My Medical Device', re.search('"StationName">(.*?)<', routed).group(1).strip()) |
| 1775 self.assertEqual(None, re.search('"MilitaryRank"', routed)) | |
| 1776 self.assertEqual(None, re.search('"0051,0010"', routed)) # A private tag | |
| 17 | 1777 |
| 1778 | |
| 1779 def test_storescu_rf(self): | |
| 1780 i = UploadInstance(_REMOTE, 'KarstenHilbertRF.dcm')['ID'] | |
| 1781 self.assertEqual(0, len(DoGet(_LOCAL, '/instances'))) | |
| 1782 j = DoPost(_REMOTE, '/modalities/orthanctest/store', str(i), 'text/plain') | |
| 1783 self.assertEqual(1, len(DoGet(_LOCAL, '/instances'))) | |
| 18 | 1784 |
| 1785 | |
| 1786 def test_anonymize_instance(self): | |
| 1787 def AnonymizeAndUpload(instanceId, parameters): | |
| 1788 return DoPost(_REMOTE, '/instances', DoPost(_REMOTE, '/instances/%s/anonymize' % instanceId, parameters, | |
| 1789 'application/json'), 'application/dicom')['ID'] | |
| 1790 | |
| 1791 def ModifyAndUpload(instanceId, parameters): | |
| 1792 return DoPost(_REMOTE, '/instances', DoPost(_REMOTE, '/instances/%s/modify' % instanceId, parameters, | |
| 1793 'application/json'), 'application/dicom')['ID'] | |
| 1794 | |
| 1795 a = UploadInstance(_REMOTE, 'PrivateMDNTags.dcm')['ID'] | |
| 1796 s1 = DoGet(_REMOTE, '/instances/%s/content/PatientName' % a) | |
| 1797 s2 = DoGet(_REMOTE, '/instances/%s/content/00e1-10c2' % a) # Some private tag | |
| 1798 s3 = DoGet(_REMOTE, '/instances/%s/content/StudyDescription' % a) | |
| 1799 s4 = DoGet(_REMOTE, '/instances/%s/content/SeriesDescription' % a) | |
| 1800 s5 = DoGet(_REMOTE, '/instances/%s/content/InstitutionName' % a) | |
| 1801 | |
| 1802 b = AnonymizeAndUpload(a, '{}') | |
| 1803 self.assertNotEqual(s1, DoGet(_REMOTE, '/instances/%s/content/PatientName' % b)) | |
| 1804 self.assertRaises(Exception, lambda: DoGet(_REMOTE, '/instances/%s/content/00e1-10c2' % b)) | |
| 1805 | |
| 1806 # Keep private tag (only OK since Orthanc 0.8.0) | |
| 1807 b = AnonymizeAndUpload(a, '{"Keep":["00e1-10c2"]}') | |
| 1808 self.assertNotEqual(s1, DoGet(_REMOTE, '/instances/%s/content/PatientName' % b)) | |
| 1809 self.assertEqual(s2, DoGet(_REMOTE, '/instances/%s/content/00e1-10c2' % b)) | |
| 1810 | |
| 1811 b = AnonymizeAndUpload(a, '{"Keep":["00e1,10c2","PatientName"]}') | |
| 1812 self.assertEqual(s1, DoGet(_REMOTE, '/instances/%s/content/PatientName' % b)) | |
| 1813 self.assertEqual(s2, DoGet(_REMOTE, '/instances/%s/content/00e1-10c2' % b)) | |
| 1814 | |
| 1815 b = AnonymizeAndUpload(a, '{"Keep":["PatientName"],"Replace":{"00e1,10c2":"Hello"}}') | |
| 1816 self.assertEqual(s1, DoGet(_REMOTE, '/instances/%s/content/PatientName' % b)) | |
| 1817 self.assertTrue(DoGet(_REMOTE, '/instances/%s/content/00e1-10c2' % b).startswith('Hello')) | |
| 1818 | |
| 1819 # Examples from the Wiki | |
| 1820 b = AnonymizeAndUpload(a, '{"Replace":{"PatientName":"hello","0010-0020":"world"},"Keep":["StudyDescription", "SeriesDescription"],"KeepPrivateTags": null}') | |
| 1821 self.assertEqual('hello', DoGet(_REMOTE, '/instances/%s/content/0010-0010' % b).strip()) | |
| 1822 self.assertEqual('world', DoGet(_REMOTE, '/instances/%s/content/PatientID' % b).strip()) | |
| 1823 self.assertEqual(s3, DoGet(_REMOTE, '/instances/%s/content/0008,1030' % b)) | |
| 1824 self.assertEqual(s4, DoGet(_REMOTE, '/instances/%s/content/0008,103e' % b)) | |
| 1825 self.assertEqual(s4, DoGet(_REMOTE, '/instances/%s/content/0008-103E' % b)) | |
| 1826 self.assertEqual(s2, DoGet(_REMOTE, '/instances/%s/content/00e1-10c2' % b)) | |
| 1827 DoGet(_REMOTE, '/instances/%s/content/InstitutionName' % a) | |
| 1828 self.assertRaises(Exception, lambda: DoGet(_REMOTE, '/instances/%s/content/InstitutionName' % b)) | |
| 1829 | |
| 1830 b = ModifyAndUpload(a, '{"Replace":{"PatientName":"hello","PatientID":"world"},"Remove":["InstitutionName"],"RemovePrivateTags": null}') | |
| 1831 self.assertEqual('hello', DoGet(_REMOTE, '/instances/%s/content/0010-0010' % b).strip()) | |
| 1832 self.assertEqual('world', DoGet(_REMOTE, '/instances/%s/content/PatientID' % b).strip()) | |
| 1833 self.assertEqual(s3, DoGet(_REMOTE, '/instances/%s/content/0008,1030' % b)) | |
| 1834 self.assertEqual(s4, DoGet(_REMOTE, '/instances/%s/content/0008,103e' % b)) | |
| 1835 self.assertRaises(Exception, lambda: DoGet(_REMOTE, '/instances/%s/content/00e1-10c2' % b)) | |
| 1836 self.assertRaises(Exception, lambda: DoGet(_REMOTE, '/instances/%s/content/InstitutionName' % b)) | |
| 1837 | |
| 1838 b = ModifyAndUpload(a, '{"Replace":{"PatientName":"hello","PatientID":"world"}}') | |
| 1839 self.assertEqual('hello', DoGet(_REMOTE, '/instances/%s/content/0010-0010' % b).strip()) | |
| 1840 self.assertEqual('world', DoGet(_REMOTE, '/instances/%s/content/PatientID' % b).strip()) | |
| 1841 self.assertEqual(s2, DoGet(_REMOTE, '/instances/%s/content/00e1,10c2' % b)) | |
| 1842 self.assertEqual(s3, DoGet(_REMOTE, '/instances/%s/content/0008,1030' % b)) | |
| 1843 self.assertEqual(s4, DoGet(_REMOTE, '/instances/%s/content/0008-103E' % b)) | |
| 1844 self.assertEqual(s5, DoGet(_REMOTE, '/instances/%s/content/InstitutionName' % b)) | |
| 1845 | |
| 1846 | |
| 1847 # Test modify non-existing | |
| 1848 i = DoPost(_REMOTE, '/tools/create-dicom', | |
| 1849 json.dumps({ | |
| 1850 'PatientName' : 'Jodogne', | |
| 1851 'Modality' : 'CT', | |
| 1852 }))['ID'] | |
| 1853 | |
| 1854 self.assertEqual('Jodogne', DoGet(_REMOTE, '/instances/%s/content/PatientName' % i).strip()) | |
| 1855 self.assertRaises(Exception, lambda: DoGet(_REMOTE, '/instances/%s/content/StudyDescription' % i)) | |
| 1856 self.assertEqual('CT', DoGet(_REMOTE, '/instances/%s/content/Modality' % i).strip()) | |
| 1857 | |
| 1858 b = ModifyAndUpload(i, '{"Replace":{"StudyDescription":"hello","Modality":"world"}}') | |
| 1859 self.assertEqual('Jodogne', DoGet(_REMOTE, '/instances/%s/content/PatientName' % b).strip()) | |
| 1860 self.assertEqual('hello', DoGet(_REMOTE, '/instances/%s/content/StudyDescription' % b).strip()) | |
| 1861 self.assertEqual('world', DoGet(_REMOTE, '/instances/%s/content/Modality' % b).strip()) | |
| 1862 | |
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1863 |
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1864 def test_incoming_jpeg(self): |
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1865 def storescu(): |
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1866 with open(os.devnull, 'w') as FNULL: |
| 45 | 1867 subprocess.check_call([ FindExecutable('storescu'), '-xs', |
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1868 _REMOTE['Server'], str(_REMOTE['DicomPort']), |
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1869 GetDatabasePath('Knix/Loc/IM-0001-0001.dcm') ], |
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1870 stderr = FNULL) |
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1871 |
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1872 self.assertEqual(0, len(DoGet(_REMOTE, '/patients'))) |
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1873 InstallLuaScript('Lua/TransferSyntaxDisable.lua') |
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1874 self.assertRaises(Exception, storescu) |
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1875 self.assertEqual(0, len(DoGet(_REMOTE, '/patients'))) |
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1876 InstallLuaScript('Lua/TransferSyntaxEnable.lua') |
| 43 | 1877 DoPost(_REMOTE, '/tools/execute-script', "print('All special transfer syntaxes are now accepted')") |
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1878 storescu() |
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1879 self.assertEqual(1, len(DoGet(_REMOTE, '/patients'))) |
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1880 |
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1881 |
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1882 def test_storescu_jpeg(self): |
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1883 self.assertEqual(0, len(DoGet(_REMOTE, '/exports')['Exports'])) |
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1884 |
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1885 knixStudy = 'b9c08539-26f93bde-c81ab0d7-bffaf2cb-a4d0bdd0' |
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1886 UploadInstance(_REMOTE, 'Knix/Loc/IM-0001-0001.dcm') |
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1887 UploadInstance(_REMOTE, 'Knix/Loc/IM-0001-0002.dcm') |
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1888 UploadInstance(_REMOTE, 'Knix/Loc/IM-0001-0003.dcm') |
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1889 |
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1890 a = UploadInstance(_REMOTE, 'Brainix/Flair/IM-0001-0001.dcm')['ID'] |
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1891 b = UploadInstance(_REMOTE, 'ColorTestImageJ.dcm')['ID'] |
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1892 self.assertEqual(0, len(DoGet(_LOCAL, '/instances'))) |
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1893 DoPost(_REMOTE, '/modalities/orthanctest/store', [ knixStudy, a, b ]) |
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1894 self.assertEqual(5, len(DoGet(_LOCAL, '/instances'))) |
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1895 |
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1896 self.assertEqual(3, len(DoGet(_REMOTE, '/exports')['Exports'])) |
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1897 |
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1898 DropOrthanc(_REMOTE) |
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1899 self.assertEqual(0, len(DoGet(_REMOTE, '/exports')['Exports'])) |
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1900 |
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1901 |
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1902 def test_pixel_data(self): |
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1903 jpeg = UploadInstance(_REMOTE, 'Knix/Loc/IM-0001-0001.dcm')['ID'] |
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1904 color = UploadInstance(_REMOTE, 'ColorTestImageJ.dcm')['ID'] |
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1905 phenix = UploadInstance(_REMOTE, 'Phenix/IM-0001-0001.dcm')['ID'] |
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1906 |
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1907 phenixSize = 358 * 512 * 2 |
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1908 colorSize = 1000 * 1000 * 3 |
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1909 jpegSize = 51918 |
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1910 |
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1911 self.assertEqual(1, len(DoGet(_REMOTE, '/instances/%s/content/7fe0-0010' % phenix))) |
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1912 self.assertEqual(1, len(DoGet(_REMOTE, '/instances/%s/content/7fe0-0010' % color))) |
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1913 self.assertEqual(2, len(DoGet(_REMOTE, '/instances/%s/content/7fe0-0010' % jpeg))) |
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1914 |
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1915 self.assertEqual(0, len(DoGet(_REMOTE, '/instances/%s/content/7fe0-0010/0' % jpeg))) |
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1916 self.assertEqual(jpegSize, len(DoGet(_REMOTE, '/instances/%s/content/7fe0-0010/1' % jpeg))) |
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1917 |
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1918 self.assertEqual(phenixSize, len(DoGet(_REMOTE, '/instances/%s/content/7fe0-0010/0' % phenix))) |
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1919 self.assertEqual(colorSize, len(DoGet(_REMOTE, '/instances/%s/content/7fe0-0010/0' % color))) |
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1920 |
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1921 |
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1922 def test_decode_brainix(self): |
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1923 brainix = [ |
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1924 UploadInstance(_REMOTE, 'Brainix/Epi/IM-0001-0001.dcm')['ID'], # (*) |
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1925 UploadInstance(_REMOTE, 'Formats/JpegLossless.dcm')['ID'], # JPEG-LS, same as (*) (since Orthanc 0.7.6) |
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1926 UploadInstance(_REMOTE, 'Formats/Jpeg.dcm')['ID'], # JPEG, same as (*) (since Orthanc 0.7.6) |
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1927 ] |
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1928 h = '6fb11b932d535c2be04beabd99793ff8' |
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1929 maxValue = 426.0 |
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1930 |
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1931 truth = Image.open(GetDatabasePath('Formats/Brainix.png')) |
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1932 for i in brainix: |
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1933 self.AssertSameImages(truth.getdata(), '/instances/%s/image-int16' % i) |
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1934 self.AssertSameImages(truth.getdata(), '/instances/%s/image-uint16' % i) |
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1935 |
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1936 truth2 = map(lambda x: min(255, x), truth.getdata()) |
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1937 for i in brainix: |
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1938 self.AssertSameImages(truth2, '/instances/%s/image-uint8' % i) |
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1939 |
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1940 truth2 = map(lambda x: x * 255.0 / maxValue, truth.getdata()) |
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1941 for i in brainix: |
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1942 self.AssertSameImages(truth2, '/instances/%s/preview' % i) |
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1943 |
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1944 for i in brainix: |
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1945 self.assertEqual(h, ComputeMD5(DoGet(_REMOTE, '/instances/%s/matlab' % i))) |
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1946 |
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1947 |
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1948 def test_decode_color(self): |
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1949 imagej = UploadInstance(_REMOTE, 'ColorTestImageJ.dcm')['ID'] |
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1950 color = UploadInstance(_REMOTE, 'ColorTestMalaterre.dcm')['ID'] |
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1951 |
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1952 for i in [ imagej, color ]: |
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1953 for j in [ 'image-uint8', 'image-uint16', 'image-int16' ]: |
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1954 self.assertRaises(Exception, lambda: DoGet(_REMOTE, '/instances/%s/%s' % (i, j))) |
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1955 |
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1956 self.assertEqual('c14c687f7a1ea9fe022479fc87c67274', ComputeMD5(DoGet(_REMOTE, '/instances/%s/preview' % imagej))) |
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1957 self.assertEqual('a87d122918a56f803bcfe9d2586b9125', ComputeMD5(DoGet(_REMOTE, '/instances/%s/preview' % color))) |
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1958 |
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1959 self.assertEqual('30cc46bfa7aba77a40e4178f6184c25a', ComputeMD5(DoGet(_REMOTE, '/instances/%s/matlab' % imagej))) |
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1960 self.assertEqual('ff195005cef06b59666fd220a9b4cd9a', ComputeMD5(DoGet(_REMOTE, '/instances/%s/matlab' % color))) |
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1961 |
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1962 |
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1963 def test_decode_rf(self): |
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1964 rf = UploadInstance(_REMOTE, 'KarstenHilbertRF.dcm')['ID'] |
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1965 truth = Image.open(GetDatabasePath('Formats/KarstenHilbertRF.png')) |
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1966 |
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1967 self.AssertSameImages(truth.getdata(), '/instances/%s/image-uint8' % rf) |
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1968 self.AssertSameImages(truth.getdata(), '/instances/%s/image-uint16' % rf) |
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1969 self.AssertSameImages(truth.getdata(), '/instances/%s/image-int16' % rf) |
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1970 self.AssertSameImages(truth.getdata(), '/instances/%s/preview' % rf) |
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1971 |
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1972 self.assertEqual('42254d70efd2f4a1b8f3455909689f0e', ComputeMD5(DoGet(_REMOTE, '/instances/%s/matlab' % rf))) |
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1973 |
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1974 |
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1975 def test_decode_multiframe(self): |
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1976 mf = UploadInstance(_REMOTE, 'Multiframe.dcm')['ID'] |
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1977 |
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1978 # Test the first frame |
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1979 truth = Image.open(GetDatabasePath('Formats/Multiframe0.png')) |
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1980 self.AssertSameImages(truth.getdata(), '/instances/%s/image-uint8' % mf) |
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1981 self.AssertSameImages(truth.getdata(), '/instances/%s/image-uint16' % mf) |
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1982 self.AssertSameImages(truth.getdata(), '/instances/%s/image-int16' % mf) |
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1983 self.AssertSameImages(truth.getdata(), '/instances/%s/preview' % mf) |
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1984 self.assertEqual('9812b99d93bbcd4e7684ded089b5dfb3', ComputeMD5(DoGet(_REMOTE, '/instances/%s/matlab' % mf))) |
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1985 |
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1986 self.AssertSameImages(truth.getdata(), '/instances/%s/frames/0/image-uint16' % mf) |
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1987 |
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1988 # Test the last frame |
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1989 truth = Image.open(GetDatabasePath('Formats/Multiframe75.png')) |
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1990 self.AssertSameImages(truth.getdata(), '/instances/%s/frames/75/image-uint16' % mf) |
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1991 |
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1992 |
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1993 def test_decode_signed(self): |
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1994 signed = UploadInstance(_REMOTE, 'SignedCT.dcm')['ID'] |
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1995 minValue = -2000 |
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1996 maxValue = 4042 |
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1997 |
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1998 truth = Image.open(GetDatabasePath('Formats/SignedCT.png')) |
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1999 self.AssertSameImages(truth.getdata(), '/instances/%s/image-int16' % signed) |
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2000 |
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2001 truth2 = map(lambda x: 0 if x >= 32768 else x, truth.getdata()) |
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2002 self.AssertSameImages(truth2, '/instances/%s/image-uint16' % signed) |
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2003 |
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2004 truth3 = map(lambda x: 255 if x >= 256 else x, truth2) |
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2005 self.AssertSameImages(truth3, '/instances/%s/image-uint8' % signed) |
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2006 |
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2007 tmp = map(lambda x: x - 65536 if x >= 32768 else x, truth.getdata()) |
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2008 tmp = map(lambda x: (255.0 * (x - minValue)) / (maxValue - minValue), tmp) |
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2009 self.AssertSameImages(tmp, '/instances/%s/preview' % signed) |
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2010 |
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2011 self.assertEqual('b57e6c872a3da50877c7da689b03a444', ComputeMD5(DoGet(_REMOTE, '/instances/%s/matlab' % signed))) |
| 22 | 2012 |
| 2013 | |
|
46
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2014 def test_googlecode_issue_32(self): |
| 22 | 2015 f = UploadInstance(_REMOTE, 'Issue32.dcm')['ID'] |
| 2016 tags = DoGet(_REMOTE, '/instances/%s/tags?simplify' % f) | |
| 2017 self.assertEqual(u'Рентгенография', tags['SeriesDescription']) | |
| 2018 self.assertEqual(u'Таз', tags['BodyPartExamined']) | |
| 2019 self.assertEqual(u'Прямая', tags['ViewPosition']) | |
| 2020 | |
| 2021 | |
| 2022 def test_encodings(self): | |
| 23 | 2023 # Latin-1 (ISO_IR 100) |
| 22 | 2024 brainix = UploadInstance(_REMOTE, 'Brainix/Epi/IM-0001-0001.dcm')['ID'] |
| 2025 tags = DoGet(_REMOTE, '/instances/%s/tags?simplify' % brainix) | |
| 2026 self.assertEqual(u'IRM cérébrale, neuro-crâne', tags['StudyDescription']) | |
| 23 | 2027 |
| 2028 # Latin-2 (ISO_IR 101) | |
| 2029 a = UploadInstance(_REMOTE, 'MarekLatin2.dcm')['ID'] | |
| 2030 i = DoGet(_REMOTE, '/instances/%s/simplified-tags' % a) | |
| 2031 # dcm2xml MarekLatin2.dcm | iconv -f latin2 -t utf-8 | xmllint --format - | |
| 2032 self.assertEqual('Imię i Nazwisko osoby opisującej', | |
| 2033 i['ContentSequence'][4]['ConceptNameCodeSequence'][0]['CodeMeaning'].encode('utf-8')) | |
| 2034 | |
|
26
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2035 |
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2036 def test_storescu_custom_aet(self): |
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2037 # This tests a feature introduced in Orthanc 0.9.1: "Custom |
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2038 # setting of the local AET during C-Store SCU (both in Lua and |
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2039 # in the REST API)." |
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2040 # https://groups.google.com/forum/#!msg/orthanc-users/o5qMULformU/wZjW2iSaMcAJ |
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2041 |
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2042 self.assertEqual(0, len(DoGet(_LOCAL, '/patients'))) |
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2043 |
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2044 a = UploadInstance(_REMOTE, 'Knee/T1/IM-0001-0001.dcm') |
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2045 b = UploadInstance(_REMOTE, 'Knee/T1/IM-0001-0002.dcm') |
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2046 c = UploadInstance(_REMOTE, 'Knee/T1/IM-0001-0003.dcm') |
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2047 |
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2048 j = DoPost(_REMOTE, '/modalities/orthanctest/store', { |
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2049 'LocalAet' : 'YOP', |
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2050 'Resources' : [ a['ID'], b['ID'] ] |
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2051 }) |
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2052 |
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2053 self.assertEqual(2, len(DoGet(_LOCAL, '/instances'))) |
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2054 self.assertEqual('YOP', DoGet(_LOCAL, '/instances/%s/metadata/RemoteAET' % a['ID'])) |
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2055 |
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2056 DropOrthanc(_LOCAL) |
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2057 self.assertEqual(0, len(DoGet(_LOCAL, '/instances'))) |
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2058 |
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2059 j = DoPost(_REMOTE, '/modalities/orthanctest/store', { |
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2060 'Resources' : [ c['ID'] ] |
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2061 }) |
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2062 |
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2063 self.assertEqual(1, len(DoGet(_LOCAL, '/instances'))) |
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2064 self.assertEqual('ORTHANC', DoGet(_LOCAL, '/instances/%s/metadata/RemoteAET' % c['ID'])) |
|
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2065 |
|
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|
2066 DropOrthanc(_REMOTE) |
|
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2067 DropOrthanc(_LOCAL) |
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2068 |
|
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2069 InstallLuaScript('Lua/AutoroutingChangeAet.lua') |
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2070 DoPost(_REMOTE, '/tools/execute-script', 'aet = "HELLO"', 'application/lua') |
|
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2071 |
|
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2072 self.assertEqual(0, len(DoGet(_LOCAL, '/instances'))) |
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2073 UploadInstance(_REMOTE, 'Knee/T1/IM-0001-0001.dcm') |
|
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2074 WaitEmpty(_REMOTE) |
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2075 self.assertEqual(1, len(DoGet(_LOCAL, '/instances'))) |
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2076 self.assertEqual('HELLO', DoGet(_LOCAL, '/instances/%s/metadata/RemoteAET' % a['ID'])) |
|
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2077 |
|
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2078 DoPost(_REMOTE, '/tools/execute-script', 'aet = nill', 'application/lua') |
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2079 UploadInstance(_REMOTE, 'Knee/T1/IM-0001-0002.dcm') |
|
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2080 WaitEmpty(_REMOTE) |
|
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2081 self.assertEqual(2, len(DoGet(_LOCAL, '/instances'))) |
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2082 self.assertEqual('ORTHANC', DoGet(_LOCAL, '/instances/%s/metadata/RemoteAET' % b['ID'])) |
|
34
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2083 |
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2084 def test_resources_since_limit(self): |
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2085 # Upload 16 instances |
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2086 for i in range(4): |
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2087 UploadInstance(_REMOTE, 'Brainix/Flair/IM-0001-000%d.dcm' % (i + 1)) |
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2088 UploadInstance(_REMOTE, 'Brainix/Epi/IM-0001-000%d.dcm' % (i + 1)) |
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2089 UploadInstance(_REMOTE, 'Knee/T1/IM-0001-000%d.dcm' % (i + 1)) |
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2090 UploadInstance(_REMOTE, 'Knee/T2/IM-0001-000%d.dcm' % (i + 1)) |
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2091 |
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2092 self.assertEqual(2, len(DoGet(_REMOTE, '/patients'))) |
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2093 self.assertEqual(2, len(DoGet(_REMOTE, '/studies'))) |
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2094 self.assertEqual(4, len(DoGet(_REMOTE, '/series'))) |
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2095 self.assertEqual(16, len(DoGet(_REMOTE, '/instances'))) |
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2096 |
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2097 self.assertRaises(Exception, lambda: DoGet(_REMOTE, '/patients&since=10' % i)) |
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2098 self.assertRaises(Exception, lambda: DoGet(_REMOTE, '/patients&limit=10' % i)) |
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2099 |
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2100 self.assertEqual(0, len(DoGet(_REMOTE, '/patients?since=0&limit=0'))) |
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2101 self.assertEqual(2, len(DoGet(_REMOTE, '/patients?since=0&limit=100'))) |
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2102 self.assertEqual(2, len(DoGet(_REMOTE, '/studies?since=0&limit=100'))) |
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2103 self.assertEqual(4, len(DoGet(_REMOTE, '/series?since=0&limit=100'))) |
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2104 self.assertEqual(16, len(DoGet(_REMOTE, '/instances?since=0&limit=100'))) |
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2105 self.assertEqual(1, len(DoGet(_REMOTE, '/patients?since=1&limit=100'))) |
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2106 self.assertEqual(0, len(DoGet(_REMOTE, '/patients?since=2&limit=100'))) |
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2107 self.assertEqual(0, len(DoGet(_REMOTE, '/patients?since=3&limit=100'))) |
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2108 self.assertEqual(1, len(DoGet(_REMOTE, '/studies?since=1&limit=100'))) |
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2109 self.assertEqual(3, len(DoGet(_REMOTE, '/series?since=1&limit=100'))) |
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2110 self.assertEqual(2, len(DoGet(_REMOTE, '/series?since=2&limit=100'))) |
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2111 self.assertEqual(1, len(DoGet(_REMOTE, '/series?since=3&limit=100'))) |
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2112 self.assertEqual(0, len(DoGet(_REMOTE, '/series?since=4&limit=100'))) |
|
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2113 self.assertEqual(0, len(DoGet(_REMOTE, '/series?since=100&limit=100'))) |
|
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2114 self.assertEqual(15, len(DoGet(_REMOTE, '/instances?since=1&limit=100'))) |
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2115 |
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2116 for limit in [ 1, 2, 3, 7, 16, 17 ]: |
|
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2117 s = {} |
|
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2118 since = 0 |
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2119 while True: |
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2120 t = DoGet(_REMOTE, '/instances?since=%d&limit=%d' % (since, limit)) |
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2121 if len(t) == 0: |
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2122 break |
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2123 |
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2124 since += len(t) |
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2125 for i in t: |
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2126 s[i] = None |
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2127 |
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2128 self.assertEqual(16, len(s)) |
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2129 for instance in DoGet(_REMOTE, '/instances'): |
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2130 self.assertTrue(instance in s) |
| 36 | 2131 |
| 2132 | |
| 2133 def test_create_pdf(self): | |
| 2134 # Upload 4 instances | |
| 2135 brainixInstance = UploadInstance(_REMOTE, 'Brainix/Flair/IM-0001-0001.dcm')['ID'] | |
| 2136 UploadInstance(_REMOTE, 'Brainix/Epi/IM-0001-0001.dcm') | |
| 2137 UploadInstance(_REMOTE, 'Knee/T1/IM-0001-0001.dcm') | |
| 2138 UploadInstance(_REMOTE, 'Knee/T2/IM-0001-0001.dcm') | |
| 2139 | |
| 2140 brainixPatient = '16738bc3-e47ed42a-43ce044c-a3414a45-cb069bd0' | |
| 2141 brainixStudy = '27f7126f-4f66fb14-03f4081b-f9341db2-53925988' | |
| 2142 brainixEpi = '2ac1316d-3e432022-62eabff2-c59f5475-9b1ac3f8' | |
| 2143 | |
| 2144 with open(GetDatabasePath('HelloWorld.pdf'), 'rb') as f: | |
| 2145 pdf = f.read() | |
| 2146 | |
| 2147 i = DoPost(_REMOTE, '/tools/create-dicom', | |
| 2148 json.dumps({ | |
| 2149 'Tags' : { | |
| 2150 'PatientName' : 'Jodogne', | |
| 2151 'Modality' : 'CT', | |
| 2152 }, | |
| 2153 'Content' : 'data:application/pdf;base64,' + base64.b64encode(pdf) | |
| 2154 })) | |
| 2155 | |
| 2156 self.assertEqual('Jodogne', DoGet(_REMOTE, '/instances/%s/content/PatientName' % i['ID']).strip()) | |
| 2157 self.assertEqual('OT', DoGet(_REMOTE, '/instances/%s/content/Modality' % i['ID']).strip()) | |
| 2158 | |
| 2159 b = DoGet(_REMOTE, '/instances/%s/content/0042-0011' % i['ID']) | |
| 2160 self.assertEqual(len(b), len(pdf) + 1) | |
| 2161 self.assertEqual(ComputeMD5(b), ComputeMD5(pdf + '\0')) | |
| 2162 | |
| 2163 self.assertRaises(Exception, lambda: DoPost(_REMOTE, '/tools/create-dicom', | |
| 2164 json.dumps({ | |
| 2165 'Parent' : brainixPatient, | |
| 2166 'Tags' : { | |
| 2167 'PatientName' : 'Jodogne', | |
| 2168 } | |
| 2169 }))) | |
| 2170 | |
| 2171 i = DoPost(_REMOTE, '/tools/create-dicom', | |
| 2172 json.dumps({ | |
| 2173 'Parent' : brainixPatient, | |
| 2174 'Tags' : { 'StudyDescription' : 'PDF^Patient' }, | |
| 2175 'Content' : 'data:application/pdf;base64,' + base64.b64encode(pdf) | |
| 2176 })) | |
| 2177 | |
| 2178 self.assertEqual(brainixPatient, DoGet(_REMOTE, '/instances/%s/patient' % i['ID'])['ID']) | |
| 2179 | |
| 2180 i = DoPost(_REMOTE, '/tools/create-dicom', | |
| 2181 json.dumps({ | |
| 2182 'Parent' : brainixStudy, | |
| 2183 'Tags' : { 'SeriesDescription' : 'PDF^Study' }, | |
| 2184 'Content' : 'data:application/pdf;base64,' + base64.b64encode(pdf) | |
| 2185 })) | |
| 2186 | |
| 2187 self.assertEqual(brainixStudy, DoGet(_REMOTE, '/instances/%s/study' % i['ID'])['ID']) | |
| 2188 | |
| 2189 i = DoPost(_REMOTE, '/tools/create-dicom', | |
| 2190 json.dumps({ | |
| 2191 'Parent' : brainixEpi, | |
| 37 | 2192 'Tags' : { 'SpecificCharacterSet' : 'ISO_IR 13' }, |
| 36 | 2193 'Content' : 'data:application/pdf;base64,' + base64.b64encode(pdf) |
| 2194 })) | |
| 2195 | |
| 2196 self.assertEqual(brainixEpi, DoGet(_REMOTE, '/instances/%s/series' % i['ID'])['ID']) | |
| 2197 | |
| 2198 b = DoGet(_REMOTE, '/instances/%s/pdf' % i['ID']) | |
| 2199 self.assertEqual(len(b), len(pdf)) | |
| 2200 self.assertEqual(ComputeMD5(b), ComputeMD5(pdf)) | |
| 2201 | |
| 2202 self.assertRaises(Exception, lambda: DoGet(_REMOTE, '/instances/%s/pdf' % brainixInstance)) | |
| 38 | 2203 |
| 2204 | |
| 2205 def test_create_series(self): | |
| 2206 i = DoPost(_REMOTE, '/tools/create-dicom', | |
| 2207 json.dumps({ | |
| 2208 'Tags' : { | |
| 40 | 2209 'SpecificCharacterSet' : 'ISO_IR 100', |
| 2210 'PatientName' : 'Sébastien Jodogne', | |
| 38 | 2211 'Modality' : 'CT', |
| 2212 }, | |
| 2213 'Content' : [ | |
| 40 | 2214 { |
| 2215 'Content': 'data:image/png;base64,iVBORw0KGgoAAAANSUhEUgAAAAUAAAAFCAYAAACNbyblAAAAHElEQVQI12P4//8/w38GIAXDIBKE0DHxgljNBAAO9TXL0Y4OHwAAAABJRU5ErkJggg==', # red dot in RGBA | |
| 2216 'Tags' : { 'ImageComments' : 'Tutu' } | |
| 2217 }, | |
| 38 | 2218 'data:image/png;base64,iVBORw0KGgoAAAANSUhEUgAAABAAAAAQCAYAAAAf8/9hAAAAoUlEQVQ4jZ2SWw3EIBREjwUsYAELa2EtoAULFUCyXAtroRZqoRbox254BdLC/DZnZjoXWJFgCDg8egW2CBEhEnDzyRk+Ecxz2KP/0AL8S99T+jQccAVs22qKwAuPuq0uyNg9cPLh3am+pe/dkHLZtqJHj6vXJrZ7nvzvxxgemXgUwnGfXqpee09mUwp8m022OYP6bLF7mVuVe0y/umxinsAXRd9z0k1ubWsAAAAASUVORK5CYII=', |
| 2219 ] | |
| 2220 })) | |
| 2221 | |
| 2222 s = DoGet(_REMOTE, i['Path']) | |
| 2223 self.assertEqual('Series', s['Type']) | |
| 2224 self.assertEqual(s['ID'], i['ID']) | |
| 2225 self.assertEqual(2, len(s['Instances'])) | |
| 39 | 2226 self.assertEqual(2, s['ExpectedNumberOfInstances']) |
| 2227 self.assertEqual('Complete', s['Status']) | |
| 40 | 2228 |
| 2229 a = DoGet(_REMOTE, '/instances/%s/tags?simplify' % s['Instances'][0]) | |
| 2230 b = DoGet(_REMOTE, '/instances/%s/tags?simplify' % s['Instances'][1]) | |
| 2231 self.assertTrue('ImageComments' in a or 'ImageComments' in b) | |
| 2232 if 'ImageComments' in a: | |
| 2233 self.assertEqual('Tutu', a['ImageComments']) | |
| 2234 else: | |
| 2235 self.assertEqual('Tutu', b['ImageComments']) | |
| 2236 | |
| 2237 patient = DoGet(_REMOTE, '/instances/%s/patient' % s['Instances'][0]) | |
| 2238 self.assertEqual(patient['MainDicomTags']['PatientName'].encode('utf-8'), | |
| 2239 'Sébastien Jodogne') | |
| 47 | 2240 |
| 2241 | |
| 2242 def test_create_binary(self): | |
| 2243 binary = ''.join(map(chr, range(256))) | |
| 2244 encoded = 'data:application/octet-stream;base64,' + base64.b64encode(binary) | |
| 2245 tags = { | |
| 2246 'PatientName' : 'Jodogne', | |
| 2247 '8899-8899' : encoded | |
| 2248 } | |
| 2249 | |
| 2250 i = DoPost(_REMOTE, '/tools/create-dicom', | |
| 2251 json.dumps({ | |
| 2252 'Tags' : tags | |
| 2253 })) | |
| 2254 | |
| 2255 self.assertEqual('Jodogne', DoGet(_REMOTE, '/instances/%s/content/PatientName' % i['ID']).strip()) | |
| 2256 self.assertEqual(binary, DoGet(_REMOTE, '/instances/%s/content/8899-8899' % i['ID']).strip()) | |
| 2257 | |
| 2258 i = DoPost(_REMOTE, '/tools/create-dicom', | |
| 2259 json.dumps({ | |
| 2260 'InterpretBinaryTags' : False, | |
| 2261 'Tags' : tags | |
| 2262 })) | |
| 2263 | |
| 2264 self.assertEqual('Jodogne', DoGet(_REMOTE, '/instances/%s/content/PatientName' % i['ID']).strip()) | |
| 2265 self.assertEqual(encoded, DoGet(_REMOTE, '/instances/%s/content/8899-8899' % i['ID'])[0:-1]) | |
|
48
e4352463ff74
test_patient_ids_collision
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
47
diff
changeset
|
2266 |
|
e4352463ff74
test_patient_ids_collision
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
47
diff
changeset
|
2267 |
|
e4352463ff74
test_patient_ids_collision
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
47
diff
changeset
|
2268 def test_patient_ids_collision(self): |
|
e4352463ff74
test_patient_ids_collision
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
47
diff
changeset
|
2269 # Upload 3 instances from 3 different studies, but with the |
|
e4352463ff74
test_patient_ids_collision
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
47
diff
changeset
|
2270 # same PatientID |
|
e4352463ff74
test_patient_ids_collision
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
47
diff
changeset
|
2271 for i in range(3): |
|
e4352463ff74
test_patient_ids_collision
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
47
diff
changeset
|
2272 UploadInstance(_REMOTE, 'PatientIdsCollision/Image%d.dcm' % (i + 1)) |
|
e4352463ff74
test_patient_ids_collision
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
47
diff
changeset
|
2273 |
|
e4352463ff74
test_patient_ids_collision
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
47
diff
changeset
|
2274 a = DoPost(_REMOTE, '/tools/find', { 'Level' : 'Patient', |
|
e4352463ff74
test_patient_ids_collision
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
47
diff
changeset
|
2275 'Query' : { 'PatientName' : '*' }}) |
|
e4352463ff74
test_patient_ids_collision
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
47
diff
changeset
|
2276 self.assertEqual(1, len(a)) |
|
e4352463ff74
test_patient_ids_collision
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
47
diff
changeset
|
2277 self.assertEqual('COMMON', DoGet(_REMOTE, '/patients/%s' % a[0]) ['MainDicomTags']['PatientID']) |
|
e4352463ff74
test_patient_ids_collision
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
47
diff
changeset
|
2278 |
|
e4352463ff74
test_patient_ids_collision
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
47
diff
changeset
|
2279 a = DoPost(_REMOTE, '/tools/find', { 'Level' : 'Study', |
|
e4352463ff74
test_patient_ids_collision
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
47
diff
changeset
|
2280 'CaseSensitive' : True, |
|
e4352463ff74
test_patient_ids_collision
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
47
diff
changeset
|
2281 'Query' : { 'PatientName' : 'FOO\\HELLO' }}) |
|
e4352463ff74
test_patient_ids_collision
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
47
diff
changeset
|
2282 self.assertEqual(2, len(a)) |
|
e4352463ff74
test_patient_ids_collision
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
47
diff
changeset
|
2283 |
|
e4352463ff74
test_patient_ids_collision
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
47
diff
changeset
|
2284 a = DoPost(_REMOTE, '/tools/find', { 'Level' : 'Series', |
|
e4352463ff74
test_patient_ids_collision
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
47
diff
changeset
|
2285 'CaseSensitive' : False, |
|
e4352463ff74
test_patient_ids_collision
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
47
diff
changeset
|
2286 'Query' : { 'PatientName' : 'Foo' }}) |
|
e4352463ff74
test_patient_ids_collision
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
47
diff
changeset
|
2287 self.assertEqual(1, len(a)) |
|
e4352463ff74
test_patient_ids_collision
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
47
diff
changeset
|
2288 self.assertEqual('FOO^SERIES', DoGet(_REMOTE, '/series/%s/study' % a[0]) ['MainDicomTags']['StudyDescription']) |
|
e4352463ff74
test_patient_ids_collision
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
47
diff
changeset
|
2289 self.assertEqual('FOO', DoGet(_REMOTE, '/series/%s/study' % a[0]) ['PatientMainDicomTags']['PatientName']) |
|
e4352463ff74
test_patient_ids_collision
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
47
diff
changeset
|
2290 self.assertEqual('COMMON', DoGet(_REMOTE, '/series/%s/study' % a[0]) ['PatientMainDicomTags']['PatientID']) |
|
e4352463ff74
test_patient_ids_collision
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
47
diff
changeset
|
2291 |
|
e4352463ff74
test_patient_ids_collision
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
47
diff
changeset
|
2292 a = DoPost(_REMOTE, '/tools/find', { 'Level' : 'Study', |
|
e4352463ff74
test_patient_ids_collision
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
47
diff
changeset
|
2293 'Query' : { 'PatientName' : '*' }}) |
|
e4352463ff74
test_patient_ids_collision
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
47
diff
changeset
|
2294 self.assertEqual(3, len(a)) |
|
e4352463ff74
test_patient_ids_collision
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
47
diff
changeset
|
2295 d = map(lambda x: DoGet(_REMOTE, '/studies/%s' % x) ['MainDicomTags']['StudyDescription'], a) |
|
e4352463ff74
test_patient_ids_collision
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
47
diff
changeset
|
2296 self.assertTrue('FOO^SERIES' in d) |
|
e4352463ff74
test_patient_ids_collision
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
47
diff
changeset
|
2297 self.assertTrue('HELLO^SERIES' in d) |
|
e4352463ff74
test_patient_ids_collision
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
47
diff
changeset
|
2298 self.assertTrue('WORLD^SERIES' in d) |
|
e4352463ff74
test_patient_ids_collision
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
47
diff
changeset
|
2299 |
|
e4352463ff74
test_patient_ids_collision
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
47
diff
changeset
|
2300 d = map(lambda x: DoGet(_REMOTE, '/studies/%s' % x) ['PatientMainDicomTags']['PatientID'], a) |
|
e4352463ff74
test_patient_ids_collision
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
47
diff
changeset
|
2301 self.assertEqual(1, len(set(d))) |
|
e4352463ff74
test_patient_ids_collision
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
47
diff
changeset
|
2302 self.assertEqual('COMMON', d[0]) |
|
e4352463ff74
test_patient_ids_collision
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
47
diff
changeset
|
2303 |
|
e4352463ff74
test_patient_ids_collision
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
47
diff
changeset
|
2304 for i in a: |
|
e4352463ff74
test_patient_ids_collision
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
47
diff
changeset
|
2305 d = DoGet(_REMOTE, '/studies/%s' % i) ['MainDicomTags']['StudyDescription'] |
|
e4352463ff74
test_patient_ids_collision
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
47
diff
changeset
|
2306 p = DoGet(_REMOTE, '/studies/%s' % i) ['PatientMainDicomTags']['PatientName'] |
|
e4352463ff74
test_patient_ids_collision
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
47
diff
changeset
|
2307 self.assertEqual('%s^SERIES' % p, d) |
|
49
e7f9b8199545
test_bitbucket_issue_4
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
48
diff
changeset
|
2308 |
|
e7f9b8199545
test_bitbucket_issue_4
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
48
diff
changeset
|
2309 |
|
e7f9b8199545
test_bitbucket_issue_4
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
48
diff
changeset
|
2310 def test_bitbucket_issue_4(self): |
|
e7f9b8199545
test_bitbucket_issue_4
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
48
diff
changeset
|
2311 UploadInstance(_REMOTE, 'Brainix/Epi/IM-0001-0001.dcm') |
|
e7f9b8199545
test_bitbucket_issue_4
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
48
diff
changeset
|
2312 UploadInstance(_REMOTE, 'Brainix/Epi/IM-0001-0002.dcm') |
|
e7f9b8199545
test_bitbucket_issue_4
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
48
diff
changeset
|
2313 UploadInstance(_REMOTE, 'Brainix/Epi/IM-0001-0003.dcm') |
|
e7f9b8199545
test_bitbucket_issue_4
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
48
diff
changeset
|
2314 UploadInstance(_REMOTE, 'Formats/Jpeg.dcm') |
|
e7f9b8199545
test_bitbucket_issue_4
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
48
diff
changeset
|
2315 UploadInstance(_REMOTE, 'Formats/JpegLossless.dcm') |
|
e7f9b8199545
test_bitbucket_issue_4
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
48
diff
changeset
|
2316 UploadInstance(_REMOTE, 'Formats/Rle.dcm') |
|
e7f9b8199545
test_bitbucket_issue_4
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
48
diff
changeset
|
2317 |
|
e7f9b8199545
test_bitbucket_issue_4
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
48
diff
changeset
|
2318 self.assertEqual(0, len(DoGet(_LOCAL, '/instances'))) |
|
e7f9b8199545
test_bitbucket_issue_4
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
48
diff
changeset
|
2319 self.assertEqual(6, len(DoGet(_REMOTE, '/instances'))) |
|
e7f9b8199545
test_bitbucket_issue_4
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
48
diff
changeset
|
2320 |
|
e7f9b8199545
test_bitbucket_issue_4
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
48
diff
changeset
|
2321 p = DoGet(_REMOTE, '/patients') |
|
e7f9b8199545
test_bitbucket_issue_4
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
48
diff
changeset
|
2322 self.assertEqual(2, len(p)) |
|
e7f9b8199545
test_bitbucket_issue_4
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
48
diff
changeset
|
2323 i1 = map(lambda x: x['ID'], DoGet(_REMOTE, '/patients/%s/instances' % p[0])) |
|
e7f9b8199545
test_bitbucket_issue_4
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
48
diff
changeset
|
2324 i2 = map(lambda x: x['ID'], DoGet(_REMOTE, '/patients/%s/instances' % p[1])) |
|
e7f9b8199545
test_bitbucket_issue_4
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
48
diff
changeset
|
2325 self.assertEqual(3, len(i1)) |
|
e7f9b8199545
test_bitbucket_issue_4
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
48
diff
changeset
|
2326 self.assertEqual(3, len(i2)) |
|
e7f9b8199545
test_bitbucket_issue_4
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
48
diff
changeset
|
2327 |
|
e7f9b8199545
test_bitbucket_issue_4
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
48
diff
changeset
|
2328 j = DoPost(_REMOTE, '/modalities/orthanctest/store', i2[0:1] + i1 + i2[1:3]) |
|
e7f9b8199545
test_bitbucket_issue_4
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
48
diff
changeset
|
2329 |
|
e7f9b8199545
test_bitbucket_issue_4
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
48
diff
changeset
|
2330 self.assertEqual(6, len(DoGet(_LOCAL, '/instances'))) |
|
50
8de63d56cf11
test_create_sequence
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
49
diff
changeset
|
2331 |
|
8de63d56cf11
test_create_sequence
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
49
diff
changeset
|
2332 |
|
8de63d56cf11
test_create_sequence
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
49
diff
changeset
|
2333 def test_create_sequence(self): |
|
8de63d56cf11
test_create_sequence
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
49
diff
changeset
|
2334 i = DoPost(_REMOTE, '/tools/create-dicom', |
|
8de63d56cf11
test_create_sequence
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
49
diff
changeset
|
2335 json.dumps({ |
|
8de63d56cf11
test_create_sequence
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
49
diff
changeset
|
2336 'Tags' : { |
|
8de63d56cf11
test_create_sequence
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
49
diff
changeset
|
2337 'SpecificCharacterSet': 'ISO_IR 100', # Encode using Latin1 |
|
8de63d56cf11
test_create_sequence
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
49
diff
changeset
|
2338 'PatientName': 'Jodogne^', |
|
51
264a20a0276d
test_modify_sequence
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
50
diff
changeset
|
2339 'ReferencedStudySequence': GenerateTestSequence(), |
|
50
8de63d56cf11
test_create_sequence
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
49
diff
changeset
|
2340 } |
|
8de63d56cf11
test_create_sequence
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
49
diff
changeset
|
2341 }))['ID'] |
|
8de63d56cf11
test_create_sequence
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
49
diff
changeset
|
2342 |
|
8de63d56cf11
test_create_sequence
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
49
diff
changeset
|
2343 self.assertEqual('Jodogne^', DoGet(_REMOTE, '/instances/%s/content/PatientName' % i)) |
|
8de63d56cf11
test_create_sequence
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
49
diff
changeset
|
2344 self.assertEqual('Hello^', DoGet(_REMOTE, '/instances/%s/content/ReferencedStudySequence/0/StudyDescription' % i)) |
|
8de63d56cf11
test_create_sequence
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
49
diff
changeset
|
2345 self.assertEqual('Toto', DoGet(_REMOTE, '/instances/%s/content/ReferencedStudySequence/0/ReferencedStudySequence/0/StudyDescription' % i)) |
|
8de63d56cf11
test_create_sequence
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
49
diff
changeset
|
2346 self.assertEqual('Tata', DoGet(_REMOTE, '/instances/%s/content/ReferencedStudySequence/0/ReferencedStudySequence/1/StudyDescription' % i)) |
|
8de63d56cf11
test_create_sequence
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
49
diff
changeset
|
2347 self.assertEqual(u'Sébastien^'.encode('latin-1'), |
|
8de63d56cf11
test_create_sequence
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
49
diff
changeset
|
2348 DoGet(_REMOTE, '/instances/%s/content/ReferencedStudySequence/1/StudyDescription' % i)) |
|
51
264a20a0276d
test_modify_sequence
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
50
diff
changeset
|
2349 |
|
264a20a0276d
test_modify_sequence
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
50
diff
changeset
|
2350 |
|
264a20a0276d
test_modify_sequence
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
50
diff
changeset
|
2351 def test_modify_sequence(self): |
|
264a20a0276d
test_modify_sequence
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
50
diff
changeset
|
2352 i = UploadInstance(_REMOTE, 'PrivateTags.dcm')['ID'] |
|
264a20a0276d
test_modify_sequence
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
50
diff
changeset
|
2353 self.assertRaises(Exception, lambda: DoGet(_REMOTE, '/instances/%s/content/ReferencedStudySequence' % i)) |
|
264a20a0276d
test_modify_sequence
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
50
diff
changeset
|
2354 |
|
264a20a0276d
test_modify_sequence
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
50
diff
changeset
|
2355 j = DoPost(_REMOTE, '/instances/%s/modify' % i, |
|
264a20a0276d
test_modify_sequence
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
50
diff
changeset
|
2356 json.dumps({ |
|
264a20a0276d
test_modify_sequence
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
50
diff
changeset
|
2357 "Replace" : { |
|
264a20a0276d
test_modify_sequence
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
50
diff
changeset
|
2358 "PatientName" : "hello", |
|
264a20a0276d
test_modify_sequence
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
50
diff
changeset
|
2359 'ReferencedStudySequence': GenerateTestSequence(), |
|
264a20a0276d
test_modify_sequence
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
50
diff
changeset
|
2360 }, |
|
264a20a0276d
test_modify_sequence
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
50
diff
changeset
|
2361 }), |
|
264a20a0276d
test_modify_sequence
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
50
diff
changeset
|
2362 'application/json') |
|
264a20a0276d
test_modify_sequence
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
50
diff
changeset
|
2363 j = DoPost(_REMOTE, '/instances', j, 'application/dicom')['ID'] |
|
264a20a0276d
test_modify_sequence
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
50
diff
changeset
|
2364 DoDelete(_REMOTE, '/instances/%s' % i) |
|
264a20a0276d
test_modify_sequence
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
50
diff
changeset
|
2365 |
| 52 | 2366 self.assertEqual(2, len(DoGet(_REMOTE, '/instances/%s/content/ReferencedStudySequence' % j))) |
| 2367 | |
| 2368 | |
| 2369 def test_compression(self): | |
| 2370 i = UploadInstance(_REMOTE, 'DummyCT.dcm')['ID'] | |
| 2371 | |
| 2372 data = DoGetRaw(_REMOTE, '/instances/%s/attachments/dicom-as-json/data' % i)[1] | |
| 2373 | |
| 2374 # "StorageCompression" is enabled in the Orthanc to be tested, | |
| 2375 # uncompress the data before running the test | |
| 2376 if DoGet(_REMOTE, '/instances/%s/attachments/dicom-as-json/is-compressed' % i) != 0: | |
| 2377 DoPost(_REMOTE, '/instances/%s/attachments/dicom-as-json/uncompress' % i) | |
| 2378 | |
| 2379 cs = DoGet(_REMOTE, '/statistics')['TotalDiskSize'] | |
| 2380 us = DoGet(_REMOTE, '/statistics')['TotalUncompressedSize'] | |
| 2381 size = DoGet(_REMOTE, '/instances/%s/attachments/dicom-as-json/size' % i) | |
| 2382 md5 = DoGet(_REMOTE, '/instances/%s/attachments/dicom-as-json/md5' % i) | |
| 2383 self.assertEqual(data, DoGetRaw(_REMOTE, '/instances/%s/attachments/dicom-as-json/compressed-data' % i)[1]) | |
| 2384 self.assertEqual(md5, DoGet(_REMOTE, '/instances/%s/attachments/dicom-as-json/compressed-md5' % i)) | |
| 2385 self.assertEqual(size, DoGet(_REMOTE, '/instances/%s/attachments/dicom-as-json/compressed-size' % i)) | |
| 2386 | |
| 2387 ops = DoGet(_REMOTE, '/instances/%s/attachments/dicom-as-json' % i) | |
| 2388 self.assertTrue('compress' in ops) | |
| 2389 self.assertTrue('uncompress' in ops) | |
| 2390 self.assertTrue('is-compressed' in ops) | |
| 2391 self.assertEqual(0, DoGet(_REMOTE, '/instances/%s/attachments/dicom-as-json/is-compressed' % i)) | |
| 2392 DoPost(_REMOTE, '/instances/%s/attachments/dicom-as-json/verify-md5' % i) | |
| 2393 | |
| 2394 DoPost(_REMOTE, '/instances/%s/attachments/dicom-as-json/compress' % i) | |
| 2395 DoPost(_REMOTE, '/instances/%s/attachments/dicom-as-json/verify-md5' % i) | |
| 2396 self.assertEqual(1, DoGet(_REMOTE, '/instances/%s/attachments/dicom-as-json/is-compressed' % i)) | |
| 2397 self.assertLess(cs, DoGet(_REMOTE, '/statistics')['TotalDiskSize']) | |
| 2398 self.assertEqual(us, DoGet(_REMOTE, '/statistics')['TotalUncompressedSize']) | |
| 2399 self.assertGreater(len(data), len(DoGetRaw(_REMOTE, '/instances/%s/attachments/dicom-as-json/compressed-data' % i)[1])) | |
| 2400 self.assertGreater(size, DoGet(_REMOTE, '/instances/%s/attachments/dicom-as-json/compressed-size' % i)) | |
| 2401 self.assertEqual(size, DoGet(_REMOTE, '/instances/%s/attachments/dicom-as-json/size' % i)) | |
| 2402 self.assertEqual(md5, DoGet(_REMOTE, '/instances/%s/attachments/dicom-as-json/md5' % i)) | |
| 2403 self.assertNotEqual(md5, DoGet(_REMOTE, '/instances/%s/attachments/dicom-as-json/compressed-md5' % i)) | |
| 2404 | |
| 2405 DoPost(_REMOTE, '/instances/%s/attachments/dicom-as-json/uncompress' % i) | |
| 2406 DoPost(_REMOTE, '/instances/%s/attachments/dicom-as-json/verify-md5' % i) | |
| 2407 self.assertEqual(0, DoGet(_REMOTE, '/instances/%s/attachments/dicom-as-json/is-compressed' % i)) | |
| 2408 self.assertEqual(data, DoGetRaw(_REMOTE, '/instances/%s/attachments/dicom-as-json/compressed-data' % i)[1]) | |
| 2409 self.assertEqual(size, DoGet(_REMOTE, '/instances/%s/attachments/dicom-as-json/compressed-size' % i)) | |
| 2410 self.assertEqual(size, DoGet(_REMOTE, '/instances/%s/attachments/dicom-as-json/size' % i)) | |
| 2411 self.assertEqual(md5, DoGet(_REMOTE, '/instances/%s/attachments/dicom-as-json/md5' % i)) | |
| 2412 self.assertEqual(md5, DoGet(_REMOTE, '/instances/%s/attachments/dicom-as-json/compressed-md5' % i)) | |
| 2413 self.assertEqual(cs, DoGet(_REMOTE, '/statistics')['TotalDiskSize']) | |
| 2414 self.assertEqual(us, DoGet(_REMOTE, '/statistics')['TotalUncompressedSize']) | |
| 53 | 2415 |
| 2416 | |
| 2417 def test_ordered_slices(self): | |
| 2418 i = UploadInstance(_REMOTE, 'Multiframe.dcm')['ID'] | |
| 2419 s = DoGet(_REMOTE, '/instances/%s' % i)['ParentSeries'] | |
| 2420 o = DoGet(_REMOTE, '/series/%s/ordered-slices' % s) | |
| 2421 self.assertEqual('Sequence', o['Type']) | |
| 2422 self.assertEqual(1, len(o['Dicom'])) | |
| 2423 self.assertEqual('/instances/9e05eb0a-18b6268c-e0d36085-8ddab517-3b5aec02/file', o['Dicom'][0]) | |
| 2424 self.assertEqual(76, len(o['Slices'])) | |
| 2425 for j in range(76): | |
| 2426 self.assertEqual('/instances/9e05eb0a-18b6268c-e0d36085-8ddab517-3b5aec02/frames/%d' % j, o['Slices'][j]) | |
| 2427 | |
| 2428 i = UploadInstance(_REMOTE, 'Brainix/Epi/IM-0001-0001.dcm')['ID'] | |
| 2429 j = UploadInstance(_REMOTE, 'Brainix/Epi/IM-0001-0002.dcm')['ID'] | |
| 2430 k = UploadInstance(_REMOTE, 'Brainix/Epi/IM-0001-0003.dcm')['ID'] | |
| 2431 s = DoGet(_REMOTE, '/instances/%s' % i)['ParentSeries'] | |
| 2432 o = DoGet(_REMOTE, '/series/%s/ordered-slices' % s) | |
| 2433 | |
| 2434 self.assertEqual('Volume', o['Type']) | |
| 2435 self.assertEqual(3, len(o['Dicom'])) | |
| 2436 self.assertEqual(3, len(o['Slices'])) | |
| 2437 self.assertEqual('/instances/%s/file' % i, o['Dicom'][2]) | |
| 2438 self.assertEqual('/instances/%s/file' % j, o['Dicom'][1]) | |
| 2439 self.assertEqual('/instances/%s/file' % k, o['Dicom'][0]) | |
| 2440 self.assertEqual('/instances/%s/frames/0' % i, o['Slices'][2]) | |
| 2441 self.assertEqual('/instances/%s/frames/0' % j, o['Slices'][1]) | |
| 2442 self.assertEqual('/instances/%s/frames/0' % k, o['Slices'][0]) | |
| 2443 | |
| 2444 i = UploadInstance(_REMOTE, 'Beaufix/IM-0001-0001.dcm')['ID'] | |
| 2445 j = UploadInstance(_REMOTE, 'Beaufix/IM-0001-0002.dcm')['ID'] | |
| 2446 s = DoGet(_REMOTE, '/instances/%s' % i)['ParentSeries'] | |
| 2447 o = DoGet(_REMOTE, '/series/%s/ordered-slices' % s) | |
| 2448 | |
| 2449 self.assertEqual('Sequence', o['Type']) | |
| 2450 self.assertEqual(2, len(o['Dicom'])) | |
| 2451 self.assertEqual(2, len(o['Slices'])) | |
| 2452 self.assertEqual('/instances/%s/file' % i, o['Dicom'][0]) | |
| 2453 self.assertEqual('/instances/%s/file' % j, o['Dicom'][1]) | |
| 2454 self.assertEqual('/instances/%s/frames/0' % i, o['Slices'][0]) | |
| 2455 self.assertEqual('/instances/%s/frames/0' % j, o['Slices'][1]) | |
|
54
c5f8a6b0d85e
test_incoming_movescu_accession
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
53
diff
changeset
|
2456 |
|
c5f8a6b0d85e
test_incoming_movescu_accession
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
53
diff
changeset
|
2457 |
|
c5f8a6b0d85e
test_incoming_movescu_accession
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
53
diff
changeset
|
2458 def test_incoming_movescu_accession(self): |
|
c5f8a6b0d85e
test_incoming_movescu_accession
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
53
diff
changeset
|
2459 UploadInstance(_REMOTE, 'Knee/T1/IM-0001-0001.dcm') |
|
c5f8a6b0d85e
test_incoming_movescu_accession
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
53
diff
changeset
|
2460 |
|
c5f8a6b0d85e
test_incoming_movescu_accession
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
53
diff
changeset
|
2461 self.assertEqual(0, len(DoGet(_LOCAL, '/patients'))) |
|
c5f8a6b0d85e
test_incoming_movescu_accession
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
53
diff
changeset
|
2462 CallMoveScu([ '--study', '-k', '0008,0052=STUDY', '-k', 'AccessionNumber=nope' ]) |
|
c5f8a6b0d85e
test_incoming_movescu_accession
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
53
diff
changeset
|
2463 self.assertEqual(0, len(DoGet(_LOCAL, '/patients'))) |
|
c5f8a6b0d85e
test_incoming_movescu_accession
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
53
diff
changeset
|
2464 CallMoveScu([ '--study', '-k', '0008,0052=PATIENT', '-k', 'AccessionNumber=A10003245599' ]) |
|
c5f8a6b0d85e
test_incoming_movescu_accession
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
53
diff
changeset
|
2465 self.assertEqual(0, len(DoGet(_LOCAL, '/patients'))) |
|
c5f8a6b0d85e
test_incoming_movescu_accession
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
53
diff
changeset
|
2466 CallMoveScu([ '--study', '-k', '0008,0052=STUDY', '-k', 'AccessionNumber=A10003245599' ]) |
|
c5f8a6b0d85e
test_incoming_movescu_accession
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
53
diff
changeset
|
2467 self.assertEqual(1, len(DoGet(_LOCAL, '/patients'))) |
|
c5f8a6b0d85e
test_incoming_movescu_accession
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
53
diff
changeset
|
2468 |
| 55 | 2469 |
| 2470 def test_dicom_to_json(self): | |
| 2471 i = UploadInstance(_REMOTE, 'PrivateMDNTags.dcm')['ID'] | |
| 2472 | |
| 2473 t = DoGet(_REMOTE, '/instances/%s/tags' % i) | |
| 2474 with open(GetDatabasePath('PrivateMDNTagsFull.json'), 'r') as f: | |
| 2475 self.assertEqual(json.loads(f.read()), t) | |
| 2476 | |
| 2477 t = DoGet(_REMOTE, '/instances/%s/tags?simplify' % i) | |
| 2478 with open(GetDatabasePath('PrivateMDNTagsSimplify.json'), 'r') as f: | |
| 2479 self.assertEqual(json.loads(f.read()), t) |