Mercurial > hg > orthanc-tests
annotate Tests/Tests.py @ 65:09fc27e0899a
patch for testing windows builds
author | Sebastien Jodogne <s.jodogne@gmail.com> |
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date | Fri, 27 Nov 2015 08:36:32 +0100 |
parents | 369e439cdfd6 |
children | e711ba6af7ea |
rev | line source |
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22 | 1 #!/usr/bin/env python |
2 # -*- coding: utf-8 -*- | |
3 | |
4 | |
3 | 5 # Orthanc - A Lightweight, RESTful DICOM Store |
6 # Copyright (C) 2012-2015 Sebastien Jodogne, Medical Physics | |
7 # Department, University Hospital of Liege, Belgium | |
8 # | |
9 # This program is free software: you can redistribute it and/or | |
10 # modify it under the terms of the GNU General Public License as | |
11 # published by the Free Software Foundation, either version 3 of the | |
12 # License, or (at your option) any later version. | |
13 # | |
14 # This program is distributed in the hope that it will be useful, but | |
15 # WITHOUT ANY WARRANTY; without even the implied warranty of | |
16 # MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU | |
17 # General Public License for more details. | |
18 # | |
19 # You should have received a copy of the GNU General Public License | |
20 # along with this program. If not, see <http://www.gnu.org/licenses/>. | |
21 | |
22 | |
14 | 23 import tempfile |
3 | 24 import unittest |
36 | 25 import base64 |
3 | 26 |
11 | 27 from PIL import ImageChops |
3 | 28 from Toolbox import * |
13 | 29 from xml.dom import minidom |
3 | 30 |
31 _LOCAL = None | |
32 _REMOTE = None | |
33 | |
34 | |
35 def SetOrthancParameters(local, remote): | |
36 global _LOCAL, _REMOTE | |
37 _LOCAL = local | |
38 _REMOTE = remote | |
39 | |
40 | |
14 | 41 def ExtractDicomTags(rawDicom, tags): |
42 with tempfile.NamedTemporaryFile(delete = True) as f: | |
43 f.write(rawDicom) | |
44 f.flush() | |
45 | 45 data = subprocess.check_output([ FindExecutable('dcm2xml'), f.name ]) |
14 | 46 |
47 result = [] | |
48 for tag in tags: | |
49 match = re.search('<element[^>]+name="%s">([^>]*)</element>' % tag, data) | |
50 if match == None: | |
51 result.append('') | |
52 else: | |
53 result.append(match.group(1)) | |
54 | |
55 return result | |
56 | |
57 | |
15 | 58 def InstallLuaScript(path): |
59 with open(GetDatabasePath(path), 'r') as f: | |
60 DoPost(_REMOTE, '/tools/execute-script', f.read(), 'application/lua') | |
61 | |
62 | |
63 def UninstallLuaCallbacks(): | |
64 DoPost(_REMOTE, '/tools/execute-script', 'function OnStoredInstance() end', 'application/lua') | |
43 | 65 InstallLuaScript('Lua/TransferSyntaxEnable.lua') |
15 | 66 |
67 | |
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68 def CompareLists(a, b): |
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69 if len(a) != len(b): |
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70 return False |
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71 |
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72 for i in range(len(a)): |
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73 d = a[i] - b[i] |
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74 if abs(d) >= 0.51: # Add some tolerance for rounding errors |
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75 return False |
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76 |
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77 return True |
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78 |
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79 |
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80 def CallMoveScu(args): |
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81 subprocess.check_call([ FindExecutable('movescu'), |
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82 '--move', _LOCAL['DicomAet'], # Target AET (i.e. storescp) |
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83 '--call', _REMOTE['DicomAet'], # Called AET (i.e. Orthanc) |
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84 '--aetitle', _LOCAL['DicomAet'], # Calling AET (i.e. storescp) |
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85 _REMOTE['Server'], str(_REMOTE['DicomPort']) ] + args, |
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86 stderr=subprocess.PIPE) |
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87 |
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88 |
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89 |
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90 def GenerateTestSequence(): |
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91 return [ |
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92 { |
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93 'StudyDescription': 'Hello^', |
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94 'ReferencedStudySequence' : [ |
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95 { |
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96 'StudyDescription': 'Toto', |
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97 }, |
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98 { |
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99 'StudyDescription': 'Tata', |
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100 }, |
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101 ] |
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102 }, |
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103 { |
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104 'StudyDescription': 'Sébastien^', |
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105 'StudyDate' : '19700202', |
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106 } |
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107 ] |
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108 |
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109 |
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110 |
15 | 111 |
3 | 112 class Orthanc(unittest.TestCase): |
113 def setUp(self): | |
114 DropOrthanc(_LOCAL) | |
115 DropOrthanc(_REMOTE) | |
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116 UninstallLuaCallbacks() |
45 | 117 #print "In test", self._testMethodName |
44
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118 |
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119 def AssertSameImages(self, truth, url): |
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120 im = GetImage(_REMOTE, url) |
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121 self.assertTrue(CompareLists(truth, im.getdata())) |
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122 |
3 | 123 |
124 def test_system(self): | |
125 self.assertTrue('Version' in DoGet(_REMOTE, '/system')) | |
126 self.assertEqual('0', DoGet(_REMOTE, '/statistics')['TotalDiskSize']) | |
127 self.assertEqual('0', DoGet(_REMOTE, '/statistics')['TotalUncompressedSize']) | |
128 | |
129 def test_upload(self): | |
130 u = UploadInstance(_REMOTE, 'DummyCT.dcm') | |
131 self.assertEqual('Success', u['Status']) | |
132 u = UploadInstance(_REMOTE, 'DummyCT.dcm') | |
133 self.assertEqual('AlreadyStored', u['Status']) | |
134 self.assertEqual(1, len(DoGet(_REMOTE, '/patients'))) | |
135 self.assertEqual(1, len(DoGet(_REMOTE, '/studies'))) | |
136 self.assertEqual(1, len(DoGet(_REMOTE, '/series'))) | |
137 self.assertEqual(1, len(DoGet(_REMOTE, '/instances'))) | |
138 | |
139 i = DoGet(_REMOTE, '/instances/%s/simplified-tags' % u['ID']) | |
140 self.assertEqual('20070101', i['StudyDate']) | |
141 | |
142 | |
5 | 143 def test_upload_2(self): |
3 | 144 i = UploadInstance(_REMOTE, 'DummyCT.dcm')['ID'] |
145 instance = DoGet(_REMOTE, '/instances/%s' % i) | |
146 self.assertEqual(i, instance['ID']) | |
147 self.assertEqual('1.2.840.113619.2.176.2025.1499492.7040.1171286242.109', | |
148 instance['MainDicomTags']['SOPInstanceUID']) | |
149 | |
150 series = DoGet(_REMOTE, '/series/%s' % instance['ParentSeries']) | |
151 self.assertEqual('1.2.840.113619.2.176.2025.1499492.7391.1171285944.394', | |
152 series['MainDicomTags']['SeriesInstanceUID']) | |
153 | |
154 study = DoGet(_REMOTE, '/studies/%s' % series['ParentStudy']) | |
155 self.assertEqual('1.2.840.113619.2.176.2025.1499492.7391.1171285944.390', | |
156 study['MainDicomTags']['StudyInstanceUID']) | |
157 | |
158 patient = DoGet(_REMOTE, '/patients/%s' % study['ParentPatient']) | |
159 self.assertEqual('ozp00SjY2xG', | |
160 patient['MainDicomTags']['PatientID']) | |
161 | |
162 dicom = DoGet(_REMOTE, '/instances/%s/file' % instance['ID']) | |
163 self.assertEqual(2472, len(dicom)) | |
164 self.assertEqual('3e29b869978b6db4886355a2b1132124', ComputeMD5(dicom)) | |
165 self.assertEqual(1, len(DoGet(_REMOTE, '/instances/%s/frames' % i))) | |
166 self.assertEqual('TWINOW', DoGet(_REMOTE, '/instances/%s/simplified-tags' % i)['StationName']) | |
167 self.assertEqual('TWINOW', DoGet(_REMOTE, '/instances/%s/tags' % i)['0008,1010']['Value']) | |
168 | |
169 | |
5 | 170 def test_images(self): |
171 i = UploadInstance(_REMOTE, 'Phenix/IM-0001-0001.dcm')['ID'] | |
172 self.assertEqual(1, len(DoGet(_REMOTE, '/instances/%s/frames' % i))) | |
3 | 173 |
5 | 174 im = GetImage(_REMOTE, '/instances/%s/preview' % i) |
175 self.assertEqual("L", im.mode) | |
176 self.assertEqual(512, im.size[0]) | |
177 self.assertEqual(358, im.size[1]) | |
178 | |
179 im = GetImage(_REMOTE, '/instances/%s/image-uint8' % i) | |
180 self.assertEqual("L", im.mode) | |
181 self.assertEqual(512, im.size[0]) | |
182 self.assertEqual(358, im.size[1]) | |
183 | |
184 im = GetImage(_REMOTE, '/instances/%s/image-uint16' % i) | |
185 self.assertEqual(512, im.size[0]) | |
186 self.assertEqual(358, im.size[1]) | |
187 | |
188 im = GetImage(_REMOTE, '/instances/%s/frames/0/preview' % i) | |
189 self.assertEqual("L", im.mode) | |
190 self.assertEqual(512, im.size[0]) | |
191 self.assertEqual(358, im.size[1]) | |
192 | |
193 im = GetImage(_REMOTE, '/instances/%s/frames/0/image-uint8' % i) | |
194 self.assertEqual("L", im.mode) | |
195 self.assertEqual(512, im.size[0]) | |
196 self.assertEqual(358, im.size[1]) | |
197 | |
198 im = GetImage(_REMOTE, '/instances/%s/frames/0/image-uint16' % i) | |
199 self.assertEqual(512, im.size[0]) | |
200 self.assertEqual(358, im.size[1]) | |
64 | 201 |
202 # This is Little Endian Explicit | |
203 self.assertEqual('1.2.840.10008.1.2.1', DoGet(_REMOTE, '/instances/%s/header?simplify' % i)['TransferSyntaxUID']) | |
204 | |
6 | 205 |
206 def test_hierarchy(self): | |
207 UploadFolder(_REMOTE, 'Brainix/Epi') | |
208 UploadFolder(_REMOTE, 'Brainix/Flair') | |
209 UploadFolder(_REMOTE, 'Knee/T1') | |
210 UploadFolder(_REMOTE, 'Knee/T2') | |
211 | |
212 p = DoGet(_REMOTE, '/patients') | |
213 s = DoGet(_REMOTE, '/studies') | |
214 t = DoGet(_REMOTE, '/series') | |
215 self.assertEqual(2, len(p)) | |
216 self.assertEqual(2, len(s)) | |
217 self.assertEqual(4, len(t)) | |
218 self.assertEqual(94, len(DoGet(_REMOTE, '/instances'))) | |
219 | |
220 brainixPatient = '16738bc3-e47ed42a-43ce044c-a3414a45-cb069bd0' | |
221 brainixStudy = '27f7126f-4f66fb14-03f4081b-f9341db2-53925988' | |
222 brainixEpi = '2ac1316d-3e432022-62eabff2-c59f5475-9b1ac3f8' | |
223 brainixFlair = '1e2c125c-411b8e86-3f4fe68e-a7584dd3-c6da78f0' | |
224 | |
225 kneePatient = 'ca29faea-b6a0e17f-067743a1-8b778011-a48b2a17' | |
226 kneeStudy = '0a9b3153-2512774b-2d9580de-1fc3dcf6-3bd83918' | |
227 kneeT1 = '6de73705-c4e65c1b-9d9ea1b5-cabcd8e7-f15e4285' | |
228 kneeT2 = 'bbf7a453-0d34251a-03663b55-46bb31b9-ffd74c59' | |
229 | |
230 self.assertTrue(brainixPatient in p) | |
231 self.assertTrue(kneePatient in p) | |
232 self.assertTrue(brainixStudy in s) | |
233 self.assertTrue(kneeStudy in s) | |
234 self.assertTrue(brainixEpi in t) | |
235 self.assertTrue(brainixFlair in t) | |
236 self.assertTrue(kneeT1 in t) | |
237 self.assertTrue(kneeT2 in t) | |
238 | |
239 self.assertEqual(44, len(DoGet(_REMOTE, '/patients/%s/instances' % brainixPatient))) | |
240 self.assertEqual(2, len(DoGet(_REMOTE, '/patients/%s/series' % brainixPatient))) | |
241 self.assertEqual(1, len(DoGet(_REMOTE, '/patients/%s/studies' % brainixPatient))) | |
242 | |
243 self.assertEqual(50, len(DoGet(_REMOTE, '/patients/%s/instances' % kneePatient))) | |
244 self.assertEqual(2, len(DoGet(_REMOTE, '/patients/%s/series' % kneePatient))) | |
245 self.assertEqual(1, len(DoGet(_REMOTE, '/patients/%s/studies' % kneePatient))) | |
246 | |
247 self.assertEqual(2, len(DoGet(_REMOTE, '/studies/%s/series' % brainixStudy))) | |
248 self.assertEqual(44, len(DoGet(_REMOTE, '/studies/%s/instances' % brainixStudy))) | |
249 | |
250 self.assertEqual(2, len(DoGet(_REMOTE, '/studies/%s/series' % kneeStudy))) | |
251 self.assertEqual(50, len(DoGet(_REMOTE, '/studies/%s/instances' % kneeStudy))) | |
252 | |
253 self.assertEqual(22, len(DoGet(_REMOTE, '/series/%s/instances' % brainixEpi))) | |
254 self.assertEqual(22, len(DoGet(_REMOTE, '/series/%s/instances' % brainixFlair))) | |
255 self.assertEqual(24, len(DoGet(_REMOTE, '/series/%s/instances' % kneeT1))) | |
256 self.assertEqual(26, len(DoGet(_REMOTE, '/series/%s/instances' % kneeT2))) | |
257 | |
258 for patient in p: | |
259 for study in DoGet(_REMOTE, '/patients/%s/studies' % patient): | |
260 self.assertEqual(patient, study['ParentPatient']) | |
261 for series in DoGet(_REMOTE, '/studies/%s/series' % study['ID']): | |
262 self.assertEqual(study['ID'], series['ParentStudy']) | |
263 for instance in DoGet(_REMOTE, '/series/%s/instances' % series['ID']): | |
264 self.assertEqual(series['ID'], instance['ParentSeries']) | |
265 | |
266 self.assertEqual(json.dumps(DoGet(_REMOTE, '/instances/%s/attachments/dicom-as-json/data' % instance['ID'])), | |
267 json.dumps(DoGet(_REMOTE, '/instances/%s/tags' % instance['ID']))) | |
268 | |
269 | |
270 r = DoDelete(_REMOTE, "/studies/%s" % brainixStudy)['RemainingAncestor'] | |
271 self.assertEqual(1, len(DoGet(_REMOTE, '/patients'))) | |
272 self.assertEqual(1, len(DoGet(_REMOTE, '/studies'))) | |
273 self.assertEqual(2, len(DoGet(_REMOTE, '/series'))) | |
274 self.assertEqual(50, len(DoGet(_REMOTE, '/instances'))) | |
275 self.assertEqual(None, r) | |
276 | |
277 r = DoDelete(_REMOTE, "/series/%s" % kneeT2)['RemainingAncestor'] | |
278 self.assertEqual(1, len(DoGet(_REMOTE, '/patients'))) | |
279 self.assertEqual(1, len(DoGet(_REMOTE, '/studies'))) | |
280 self.assertEqual(1, len(DoGet(_REMOTE, '/series'))) | |
281 self.assertEqual(24, len(DoGet(_REMOTE, '/instances'))) | |
282 self.assertEqual('Study', r['Type']) | |
283 self.assertEqual(kneeStudy, r['ID']) | |
284 | |
285 r = DoDelete(_REMOTE, "/instances/%s" % DoGet(_REMOTE, '/instances')[0])['RemainingAncestor'] | |
286 self.assertEqual(1, len(DoGet(_REMOTE, '/patients'))) | |
287 self.assertEqual(1, len(DoGet(_REMOTE, '/studies'))) | |
288 self.assertEqual(1, len(DoGet(_REMOTE, '/series'))) | |
289 self.assertEqual(23, len(DoGet(_REMOTE, '/instances'))) | |
290 self.assertEqual('Series', r['Type']) | |
291 self.assertEqual(kneeT1, r['ID']) | |
292 | |
293 r = DoDelete(_REMOTE, "/patients/%s" % kneePatient)['RemainingAncestor'] | |
294 self.assertEqual(0, len(DoGet(_REMOTE, '/patients'))) | |
295 self.assertEqual(0, len(DoGet(_REMOTE, '/studies'))) | |
296 self.assertEqual(0, len(DoGet(_REMOTE, '/series'))) | |
297 self.assertEqual(0, len(DoGet(_REMOTE, '/instances'))) | |
298 self.assertEqual(None, r) | |
299 | |
300 DropOrthanc(_REMOTE) | |
301 self.assertEqual('0', DoGet(_REMOTE, '/statistics')['TotalDiskSize']) | |
302 self.assertEqual('0', DoGet(_REMOTE, '/statistics')['TotalUncompressedSize']) | |
7 | 303 |
304 | |
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305 def test_multiframe(self): |
7 | 306 i = UploadInstance(_REMOTE, 'Multiframe.dcm')['ID'] |
307 self.assertEqual(76, len(DoGet(_REMOTE, '/instances/%s/frames' % i))) | |
308 | |
309 im = GetImage(_REMOTE, '/instances/%s/frames/0/preview' % i) | |
310 self.assertEqual("L", im.mode) | |
311 self.assertEqual(512, im.size[0]) | |
312 self.assertEqual(512, im.size[1]) | |
313 | |
314 DoGet(_REMOTE, '/instances/%s/frames/0/image-uint8' % i) | |
315 DoGet(_REMOTE, '/instances/%s/frames/0/image-uint16' % i) | |
316 DoGet(_REMOTE, '/instances/%s/frames/75/preview' % i) | |
317 self.assertRaises(Exception, lambda: DoGet(_REMOTE, '/instances/%s/frames/aaa/preview' % i)) | |
318 self.assertRaises(Exception, lambda: DoGet(_REMOTE, '/instances/%s/frames/76/preview' % i)) | |
319 | |
8
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320 |
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321 def test_changes(self): |
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322 # Check emptiness |
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323 c = DoGet(_REMOTE, '/changes') |
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324 self.assertEqual(0, len(c['Changes'])) |
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325 self.assertEqual(0, c['Last']) |
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326 self.assertTrue(c['Done']) |
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327 c = DoGet(_REMOTE, '/changes?last') |
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328 self.assertEqual(0, len(c['Changes'])) |
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329 self.assertEqual(0, c['Last']) |
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330 self.assertTrue(c['Done']) |
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331 |
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332 # Add 1 instance |
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333 i = UploadInstance(_REMOTE, 'Brainix/Flair/IM-0001-0001.dcm')['ID'] |
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334 c = DoGet(_REMOTE, '/changes') |
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335 begin = c['Last'] |
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336 self.assertEqual(4, len(c['Changes'])) |
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337 self.assertTrue(c['Done']) |
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338 self.assertEqual(c['Changes'][-1]['Seq'], c['Last']) |
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339 |
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340 c = DoGet(_REMOTE, '/changes?last') |
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341 self.assertEqual(1, len(c['Changes'])) |
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342 self.assertEqual(begin, c['Last']) |
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343 self.assertTrue(c['Done']) |
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344 c = DoGet(_REMOTE, '/changes?limit=1&since=' + str(begin - 1)) |
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345 self.assertEqual(1, len(c['Changes'])) |
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346 self.assertEqual(begin, c['Last']) |
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347 self.assertTrue(c['Done']) |
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348 c = DoGet(_REMOTE, '/changes?limit=1&since=' + str(begin - 2)) |
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349 self.assertEqual(1, len(c['Changes'])) |
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350 self.assertEqual(begin - 1, c['Last']) |
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351 self.assertFalse(c['Done']) |
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352 c = DoGet(_REMOTE, '/changes?limit=1&since=' + str(begin - 3)) |
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353 self.assertEqual(1, len(c['Changes'])) |
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354 self.assertEqual(begin - 2, c['Last']) |
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355 self.assertFalse(c['Done']) |
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356 |
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357 UploadFolder(_REMOTE, 'Knee/T1') |
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358 UploadFolder(_REMOTE, 'Knee/T2') |
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359 since = begin |
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360 countPatients = 0 |
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361 countStudies = 0 |
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362 countSeries = 0 |
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363 countInstances = 0 |
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364 completed = 0 |
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365 while True: |
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366 c = DoGet(_REMOTE, '/changes', { 'since' : since, 'limit' : 3 }) |
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367 since = c['Last'] |
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368 for i in c['Changes']: |
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369 if i['ResourceType'] == 'Instance': |
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370 countInstances += 1 |
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371 if i['ResourceType'] == 'Patient': |
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372 countPatients += 1 |
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373 if i['ResourceType'] == 'Study': |
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374 countStudies += 1 |
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375 if i['ResourceType'] == 'Series': |
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376 countSeries += 1 |
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377 if i['ChangeType'] == 'NewInstance': |
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378 countInstances += 1 |
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379 if i['ChangeType'] == 'NewPatient': |
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380 countPatients += 1 |
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381 if i['ChangeType'] == 'NewStudy': |
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382 countStudies += 1 |
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383 if i['ChangeType'] == 'NewSeries': |
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384 countSeries += 1 |
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385 if i['ChangeType'] == 'CompletedSeries': |
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386 completed += 1 |
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387 self.assertTrue('ID' in i) |
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388 self.assertTrue('Path' in i) |
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389 self.assertTrue('Seq' in i) |
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390 if c['Done']: |
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391 break |
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392 |
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393 self.assertEqual(2 * 50, countInstances) |
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394 self.assertEqual(2 * 1, countPatients) |
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395 self.assertEqual(2 * 1, countStudies) |
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396 self.assertEqual(2 * 2, countSeries) |
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397 self.assertEqual(0, completed) |
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398 |
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399 |
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400 def test_archive(self): |
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401 UploadInstance(_REMOTE, 'Knee/T1/IM-0001-0001.dcm') |
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402 UploadInstance(_REMOTE, 'Knee/T2/IM-0001-0001.dcm') |
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403 |
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404 z = GetArchive(_REMOTE, '/patients/%s/archive' % DoGet(_REMOTE, '/patients')[0]) |
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405 self.assertEqual(2, len(z.namelist())) |
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406 |
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407 z = GetArchive(_REMOTE, '/studies/%s/archive' % DoGet(_REMOTE, '/studies')[0]) |
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408 self.assertEqual(2, len(z.namelist())) |
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409 |
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410 z = GetArchive(_REMOTE, '/series/%s/archive' % DoGet(_REMOTE, '/series')[0]) |
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411 self.assertEqual(1, len(z.namelist())) |
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412 |
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413 UploadInstance(_REMOTE, 'Brainix/Flair/IM-0001-0001.dcm') |
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414 |
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415 z = GetArchive(_REMOTE, '/patients/%s/archive' % DoGet(_REMOTE, '/patients')[0]) |
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416 self.assertEqual(2, len(z.namelist())) |
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417 |
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418 |
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419 def test_media_archive(self): |
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420 UploadInstance(_REMOTE, 'Knee/T1/IM-0001-0001.dcm') |
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421 UploadInstance(_REMOTE, 'Knee/T2/IM-0001-0001.dcm') |
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422 |
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423 z = GetArchive(_REMOTE, '/patients/%s/media' % DoGet(_REMOTE, '/patients')[0]) |
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424 self.assertEqual(3, len(z.namelist())) |
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425 self.assertTrue('IMAGES/IM0' in z.namelist()) |
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426 self.assertTrue('IMAGES/IM1' in z.namelist()) |
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427 self.assertTrue('DICOMDIR' in z.namelist()) |
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428 |
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429 try: |
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430 os.remove('/tmp/DICOMDIR') |
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431 except: |
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432 # The file does not exist |
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433 pass |
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434 |
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435 z.extract('DICOMDIR', '/tmp') |
45 | 436 a = subprocess.check_output([ FindExecutable('dciodvfy'), '/tmp/DICOMDIR' ], |
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437 stderr = subprocess.STDOUT).split('\n') |
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438 self.assertEqual(3, len(a)) |
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439 self.assertTrue(a[0].startswith('Warning')) |
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440 self.assertEqual('BasicDirectory', a[1]) |
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441 self.assertEqual('', a[2]) |
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442 |
45 | 443 a = subprocess.check_output([ FindExecutable('dcentvfy'), '/tmp/DICOMDIR' ], |
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444 stderr = subprocess.STDOUT).split('\n') |
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445 self.assertEqual(1, len(a)) |
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446 self.assertEqual('', a[0]) |
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447 |
45 | 448 a = subprocess.check_output([ FindExecutable('dcm2xml'), '/tmp/DICOMDIR' ]) |
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449 self.assertTrue(re.search('1.3.46.670589.11.17521.5.0.3124.2008081908590448738', a) != None) |
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450 self.assertTrue(re.search('1.3.46.670589.11.17521.5.0.3124.2008081909113806560', a) != None) |
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451 |
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452 os.remove('/tmp/DICOMDIR') |
10 | 453 |
454 | |
455 def test_protection(self): | |
456 UploadInstance(_REMOTE, 'Knee/T1/IM-0001-0001.dcm') | |
457 UploadInstance(_REMOTE, 'Brainix/Flair/IM-0001-0001.dcm') | |
458 self.assertEqual(2, len(DoGet(_REMOTE, '/patients'))) | |
459 a = DoGet(_REMOTE, '/patients')[0] | |
460 b = DoGet(_REMOTE, '/patients')[1] | |
461 self.assertEqual(0, DoGet(_REMOTE, '/patients/%s/protected' % a)) | |
462 DoPut(_REMOTE, '/patients/%s/protected' % a, '0', 'text/plain') | |
463 self.assertEqual(0, DoGet(_REMOTE, '/patients/%s/protected' % a)) | |
464 DoPut(_REMOTE, '/patients/%s/protected' % a, '1', 'text/plain') | |
465 self.assertEqual(1, DoGet(_REMOTE, '/patients/%s/protected' % a)) | |
466 DoPut(_REMOTE, '/patients/%s/protected' % a, '0', 'text/plain') | |
467 self.assertEqual(0, DoGet(_REMOTE, '/patients/%s/protected' % a)) | |
468 | |
469 | |
12 | 470 def test_raw_tags(self): |
10 | 471 i = UploadInstance(_REMOTE, 'PrivateTags.dcm')['ID'] |
472 | |
473 dicom = DoGet(_REMOTE, '/instances/%s/file' % i) | |
474 self.assertEqual('1a7c56cb02d6e742cc9c856a8ac182e3', ComputeMD5(dicom)) | |
475 | |
476 s = '/instances/%s/content/' % i | |
477 | |
478 self.assertEqual('LOGIQBOOK', DoGet(_REMOTE, s + '0008-1010').strip()) | |
479 self.assertRaises(Exception, lambda: DoGet(_REMOTE, s + '0008-1011')) | |
480 | |
481 self.assertEqual('Abdomen', DoGet(_REMOTE, s + '7fe1-1001/0/7fe1-1008/0/7fe1-1057').strip()) | |
482 self.assertEqual('cla_3c', DoGet(_REMOTE, s + '7fe1-1001/0/7fe1-1008/8/7fe1-1057').strip()) | |
483 | |
484 UploadInstance(_REMOTE, 'Brainix/Epi/IM-0001-0001.dcm') | |
485 UploadInstance(_REMOTE, 'Brainix/Flair/IM-0001-0001.dcm') | |
486 UploadInstance(_REMOTE, 'Knee/T1/IM-0001-0001.dcm') | |
487 UploadInstance(_REMOTE, 'Knee/T2/IM-0001-0001.dcm') | |
488 | |
489 for i in DoGet(_REMOTE, '/instances'): | |
490 aid = DoGet(_REMOTE, '/instances/%s' % i)['MainDicomTags']['SOPInstanceUID'] | |
491 self.assertEqual(aid, DoGet(_REMOTE, '/instances/%s/content/0008-0018' % i).replace(chr(0), '')) | |
492 | |
493 | |
494 def test_raw_tags_mdn(self): | |
495 # Bug reported by Cyril Paulus | |
496 i = UploadInstance(_REMOTE, 'PrivateMDNTags.dcm')['ID'] | |
497 self.assertAlmostEqual(0.000027, DoGet(_REMOTE, '/instances/%s/content/7053-1000' % i)) | |
498 | |
499 | |
500 def test_modify_instance(self): | |
501 i = UploadInstance(_REMOTE, 'PrivateTags.dcm')['ID'] | |
502 modified = DoPost(_REMOTE, '/instances/%s/modify' % i, | |
503 json.dumps({ | |
504 "Replace" : { | |
505 "PatientName" : "hello", | |
506 #"PatientID" : "world" | |
507 }, | |
508 "Remove" : [ "StationName" ], | |
509 "RemovePrivateTags" : None | |
510 }), | |
511 'application/json') | |
512 j = DoPost(_REMOTE, '/instances', modified, 'application/dicom')['ID'] | |
513 | |
514 self.assertNotEqual('hello', DoGet(_REMOTE, '/instances/%s/content/0010-0010' % i).strip()) | |
515 #self.assertNotEqual('world', DoGet(_REMOTE, '/instances/%s/content/0010-0020' % i).strip()) | |
516 self.assertEqual('LOGIQBOOK', DoGet(_REMOTE, '/instances/%s/content/0008-1010' % i).strip()) | |
517 DoGet(_REMOTE, '/instances/%s/content/6003-1010' % i) # Some private tag | |
518 | |
519 self.assertEqual('hello', DoGet(_REMOTE, '/instances/%s/content/0010-0010' % j).strip()) | |
520 #self.assertEqual('world', DoGet(_REMOTE, '/instances/%s/content/0010-0020' % j).strip()) | |
521 self.assertRaises(Exception, lambda: DoGet(_REMOTE, '/instances/%s/content/0008-1010' % j)) | |
522 self.assertRaises(Exception, lambda: DoGet(_REMOTE, '/instances/%s/content/6003-1010' % j)) | |
523 | |
524 | |
525 def test_modify_series(self): | |
526 # Upload 4 images from the same series | |
527 for i in range(4): | |
528 UploadInstance(_REMOTE, 'Brainix/Epi/IM-0001-000%d.dcm' % (i + 1)) | |
529 | |
530 origSeries = DoGet(_REMOTE, '/series')[0] | |
531 newSeries = DoPost(_REMOTE, '/series/%s/modify' % origSeries, | |
532 '{"Replace":{"PatientName":"Jodogne"}}', | |
533 'application/json')['ID'] | |
534 | |
535 self.assertEqual(origSeries, DoGet(_REMOTE, '/series/%s' % newSeries)['ModifiedFrom']) | |
536 instances = DoGet(_REMOTE, '/series/%s' % newSeries)['Instances'] | |
537 self.assertEqual(4, len(instances)) | |
538 for i in instances: | |
539 j = DoGet(_REMOTE, '/instances/%s' % i)['ModifiedFrom'] | |
540 self.assertEqual(newSeries, DoGet(_REMOTE, '/instances/%s' % i)['ParentSeries']) | |
541 self.assertEqual(origSeries, DoGet(_REMOTE, '/instances/%s' % j)['ParentSeries']) | |
542 | |
543 self.assertEqual('Jodogne', DoGet(_REMOTE, '/instances/%s/content/0010-0010' % i).strip()) | |
544 self.assertNotEqual('Jodogne', DoGet(_REMOTE, '/instances/%s/content/0010-0010' % j).strip()) | |
545 | |
546 | |
547 def test_modify_study(self): | |
548 # Upload 4 images from the 2 series of the same study | |
549 for i in range(4): | |
550 UploadInstance(_REMOTE, 'Brainix/Flair/IM-0001-000%d.dcm' % (i + 1)) | |
551 UploadInstance(_REMOTE, 'Brainix/Epi/IM-0001-000%d.dcm' % (i + 1)) | |
552 | |
553 origStudy = DoGet(_REMOTE, '/studies')[0] | |
554 newStudy = DoPost(_REMOTE, '/studies/%s/modify' % origStudy, | |
555 '{"Replace":{"PatientName":"Jodogne"}}', | |
556 'application/json')['ID'] | |
557 | |
558 self.assertEqual(origStudy, DoGet(_REMOTE, '/studies/%s' % newStudy)['ModifiedFrom']) | |
559 series = DoGet(_REMOTE, '/studies/%s' % newStudy)['Series'] | |
560 self.assertEqual(2, len(series)) | |
561 for s in series: | |
562 ss = DoGet(_REMOTE, '/series/%s' % s)['ModifiedFrom'] | |
563 self.assertEqual(newStudy, DoGet(_REMOTE, '/series/%s' % s)['ParentStudy']) | |
564 self.assertEqual(origStudy, DoGet(_REMOTE, '/series/%s' % ss)['ParentStudy']) | |
565 | |
566 instances = DoGet(_REMOTE, '/series/%s' % s)['Instances'] | |
567 for i in instances: | |
568 j = DoGet(_REMOTE, '/instances/%s' % i)['ModifiedFrom'] | |
569 self.assertEqual(s, DoGet(_REMOTE, '/instances/%s' % i)['ParentSeries']) | |
570 self.assertEqual(ss, DoGet(_REMOTE, '/instances/%s' % j)['ParentSeries']) | |
571 | |
572 self.assertEqual('Jodogne', DoGet(_REMOTE, '/instances/%s/content/0010-0010' % i).strip()) | |
573 self.assertNotEqual('Jodogne', DoGet(_REMOTE, '/instances/%s/content/0010-0010' % j).strip()) | |
574 | |
575 | |
576 def test_anonymize_series(self): | |
577 # Upload 4 images from the same series | |
578 for i in range(4): | |
579 UploadInstance(_REMOTE, 'Brainix/Epi/IM-0001-000%d.dcm' % (i + 1)) | |
580 | |
581 origSeries = DoGet(_REMOTE, '/series')[0] | |
582 newSeries = DoPost(_REMOTE, '/series/%s/anonymize' % origSeries, | |
583 '{}', | |
584 'application/json')['ID'] | |
585 | |
586 self.assertEqual(origSeries, DoGet(_REMOTE, '/series/%s' % newSeries)['AnonymizedFrom']) | |
587 instances = DoGet(_REMOTE, '/series/%s' % newSeries)['Instances'] | |
588 self.assertEqual(4, len(instances)) | |
589 for i in instances: | |
590 j = DoGet(_REMOTE, '/instances/%s' % i)['AnonymizedFrom'] | |
591 self.assertEqual(newSeries, DoGet(_REMOTE, '/instances/%s' % i)['ParentSeries']) | |
592 self.assertEqual(origSeries, DoGet(_REMOTE, '/instances/%s' % j)['ParentSeries']) | |
593 | |
594 DoGet(_REMOTE, '/instances/%s/content/0008-1010' % j) | |
595 self.assertRaises(Exception, lambda: DoGet(_REMOTE, '/instances/%s/content/0008-1010' % i)) | |
596 | |
597 | |
598 def test_anonymize_study(self): | |
599 # Upload 4 images from the 2 series of the same study | |
600 for i in range(4): | |
601 UploadInstance(_REMOTE, 'Brainix/Flair/IM-0001-000%d.dcm' % (i + 1)) | |
602 UploadInstance(_REMOTE, 'Brainix/Epi/IM-0001-000%d.dcm' % (i + 1)) | |
603 | |
604 origStudy = DoGet(_REMOTE, '/studies')[0] | |
605 newStudy = DoPost(_REMOTE,'/studies/%s/anonymize' % origStudy, | |
606 '{"Replace":{"PatientName":"Jodogne"}}', | |
607 'application/json')['ID'] | |
608 | |
609 self.assertEqual(origStudy, DoGet(_REMOTE, '/studies/%s' % newStudy)['AnonymizedFrom']) | |
610 series = DoGet(_REMOTE, '/studies/%s' % newStudy)['Series'] | |
611 self.assertEqual(2, len(series)) | |
612 for s in series: | |
613 ss = DoGet(_REMOTE, '/series/%s' % s)['AnonymizedFrom'] | |
614 self.assertEqual(newStudy, DoGet(_REMOTE, '/series/%s' % s)['ParentStudy']) | |
615 self.assertEqual(origStudy, DoGet(_REMOTE, '/series/%s' % ss)['ParentStudy']) | |
616 | |
617 instances = DoGet(_REMOTE, '/series/%s' % s)['Instances'] | |
618 for i in instances: | |
619 j = DoGet(_REMOTE, '/instances/%s' % i)['AnonymizedFrom'] | |
620 self.assertEqual(s, DoGet(_REMOTE, '/instances/%s' % i)['ParentSeries']) | |
621 self.assertEqual(ss, DoGet(_REMOTE, '/instances/%s' % j)['ParentSeries']) | |
622 | |
623 self.assertEqual('Jodogne', DoGet(_REMOTE, '/instances/%s/content/0010-0010' % i).strip()) | |
624 self.assertNotEqual('Jodogne', DoGet(_REMOTE, '/instances/%s/content/0010-0010' % j).strip()) | |
11 | 625 |
626 | |
627 | |
628 def test_storescu(self): | |
629 # Check emptiness | |
630 e = DoGet(_REMOTE, '/exports') | |
631 self.assertEqual(0, len(e['Exports'])) | |
632 self.assertEqual(0, e['Last']) | |
633 self.assertTrue(e['Done']) | |
634 e = DoGet(_REMOTE, '/exports?last') | |
635 self.assertEqual(0, len(e['Exports'])) | |
636 self.assertEqual(0, e['Last']) | |
637 self.assertTrue(e['Done']) | |
638 | |
639 # Add 1 instance | |
640 i = UploadInstance(_REMOTE, 'DummyCT.dcm')['ID'] | |
641 self.assertEqual(0, len(DoGet(_LOCAL, '/patients'))) | |
642 | |
643 # Export the instance | |
644 j = DoPost(_REMOTE, '/modalities/orthanctest/store', str(i), 'text/plain') # instance | |
645 self.assertEqual(1, len(DoGet(_LOCAL, '/patients'))) | |
646 self.assertEqual(1, len(DoGet(_LOCAL, '/studies'))) | |
647 self.assertEqual(1, len(DoGet(_LOCAL, '/series'))) | |
648 self.assertEqual(1, len(DoGet(_LOCAL, '/instances'))) | |
649 | |
650 e = DoGet(_REMOTE, '/exports') | |
651 self.assertEqual(1, len(e['Exports'])) | |
652 self.assertTrue(e['Done']) | |
653 self.assertEqual(e['Exports'][-1]['Seq'], e['Last']) | |
654 e = DoGet(_REMOTE, '/exports?limit=1') | |
655 self.assertEqual(1, len(e['Exports'])) | |
656 self.assertTrue(e['Done']) | |
657 self.assertEqual(e['Exports'][-1]['Seq'], e['Last']) | |
658 e = DoGet(_REMOTE, '/exports?last') | |
659 self.assertEqual(1, len(e['Exports'])) | |
660 self.assertTrue(e['Done']) | |
661 self.assertEqual(e['Exports'][-1]['Seq'], e['Last']) | |
662 seqInstance = e['Last'] | |
663 | |
664 # Export the series | |
665 j = DoPost(_REMOTE, '/modalities/orthanctest/store', 'f2635388-f01d497a-15f7c06b-ad7dba06-c4c599fe', 'text/plain') | |
666 | |
667 e = DoGet(_REMOTE, '/exports') | |
668 self.assertEqual(2, len(e['Exports'])) | |
669 self.assertTrue(e['Done']) | |
670 self.assertEqual(e['Exports'][-1]['Seq'], e['Last']) | |
671 seqSeries = e['Last'] | |
672 self.assertNotEqual(seqInstance, seqSeries) | |
673 e = DoGet(_REMOTE, '/exports?limit=1&since=0') | |
674 self.assertEqual(1, len(e['Exports'])) | |
675 self.assertFalse(e['Done']) | |
676 self.assertEqual(e['Exports'][-1]['Seq'], seqInstance) | |
677 e = DoGet(_REMOTE, '/exports?limit=1&since=' + str(seqInstance)) | |
678 self.assertEqual(1, len(e['Exports'])) | |
679 self.assertTrue(e['Done']) | |
680 self.assertEqual(e['Exports'][-1]['Seq'], seqSeries) | |
681 e = DoGet(_REMOTE, '/exports?last') | |
682 self.assertEqual(1, len(e['Exports'])) | |
683 self.assertTrue(e['Done']) | |
684 self.assertEqual(e['Exports'][-1]['Seq'], seqSeries) | |
685 | |
686 # Export the study | |
687 j = DoPost(_REMOTE, '/modalities/orthanctest/store', 'b9c08539-26f93bde-c81ab0d7-bffaf2cb-a4d0bdd0', 'text/plain') | |
688 seqStudy = DoGet(_REMOTE, '/exports')['Last'] | |
689 | |
690 # Export the patient | |
691 j = DoPost(_REMOTE, '/modalities/orthanctest/store', '6816cb19-844d5aee-85245eba-28e841e6-2414fae2', 'text/plain') | |
692 self.assertEqual(1, len(DoGet(_LOCAL, '/patients'))) | |
693 self.assertEqual(1, len(DoGet(_LOCAL, '/studies'))) | |
694 self.assertEqual(1, len(DoGet(_LOCAL, '/series'))) | |
695 self.assertEqual(1, len(DoGet(_LOCAL, '/instances'))) | |
696 | |
697 e = DoGet(_REMOTE, '/exports') | |
698 self.assertEqual(4, len(e['Exports'])) | |
699 self.assertTrue(e['Done']) | |
700 self.assertEqual(e['Exports'][-1]['Seq'], e['Last']) | |
701 seqPatient = e['Last'] | |
702 self.assertNotEqual(seqInstance, seqSeries) | |
703 self.assertNotEqual(seqSeries, seqStudy) | |
704 self.assertNotEqual(seqStudy, seqPatient) | |
705 self.assertTrue(seqInstance < seqSeries) | |
706 self.assertTrue(seqSeries < seqStudy) | |
707 self.assertTrue(seqStudy < seqPatient) | |
708 e = DoGet(_REMOTE, '/exports?limit=1&since=0') | |
709 self.assertEqual(1, len(e['Exports'])) | |
710 self.assertFalse(e['Done']) | |
711 self.assertEqual(e['Exports'][-1]['Seq'], seqInstance) | |
712 e = DoGet(_REMOTE, '/exports?limit=1&since=' + str(seqInstance)) | |
713 self.assertEqual(1, len(e['Exports'])) | |
714 self.assertFalse(e['Done']) | |
715 self.assertEqual(e['Exports'][-1]['Seq'], seqSeries) | |
716 e = DoGet(_REMOTE, '/exports?limit=1&since=' + str(seqSeries)) | |
717 self.assertEqual(1, len(e['Exports'])) | |
718 self.assertFalse(e['Done']) | |
719 self.assertEqual(e['Exports'][-1]['Seq'], seqStudy) | |
720 e = DoGet(_REMOTE, '/exports?limit=1&since=' + str(seqStudy)) | |
721 self.assertEqual(1, len(e['Exports'])) | |
722 self.assertTrue(e['Done']) | |
723 self.assertEqual(e['Exports'][-1]['Seq'], seqPatient) | |
724 e = DoGet(_REMOTE, '/exports?last') | |
725 self.assertEqual(1, len(e['Exports'])) | |
726 self.assertTrue(e['Done']) | |
727 self.assertEqual(e['Exports'][-1]['Seq'], seqPatient) | |
728 | |
729 | |
730 # Check the content of the logged information | |
731 e = DoGet(_REMOTE, '/exports')['Exports'] | |
732 | |
733 if 'PatientID' in e[0]: | |
734 # Since Orthanc 0.8.6 | |
735 patient = 'PatientID' | |
736 study = 'StudyInstanceUID' | |
737 series = 'SeriesInstanceUID' | |
738 instance = 'SOPInstanceUID' | |
739 else: | |
740 # Up to Orthanc 0.8.5 | |
741 patient = 'PatientId' | |
742 study = 'StudyInstanceUid' | |
743 series = 'SeriesInstanceUid' | |
744 instance = 'SopInstanceUid' | |
745 | |
746 for k in range(4): | |
747 self.assertTrue('Date' in e[k]) | |
748 self.assertTrue('Seq' in e[k]) | |
749 self.assertEqual('orthanctest', e[k]['RemoteModality']) | |
750 | |
751 self.assertEqual(10, len(e[0])) | |
752 self.assertEqual('Instance', e[0]['ResourceType']) | |
753 self.assertEqual('66a662ce-7430e543-bad44d47-0dc5a943-ec7a538d', e[0]['ID']) | |
754 self.assertEqual('/instances/66a662ce-7430e543-bad44d47-0dc5a943-ec7a538d', e[0]['Path']) | |
755 self.assertEqual('1.2.840.113619.2.176.2025.1499492.7040.1171286242.109', e[0][instance]) | |
756 self.assertEqual('1.2.840.113619.2.176.2025.1499492.7391.1171285944.394', e[0][series]) | |
757 self.assertEqual('1.2.840.113619.2.176.2025.1499492.7391.1171285944.390', e[0][study]) | |
758 self.assertEqual('ozp00SjY2xG', e[0][patient]) | |
759 | |
760 self.assertEqual(9, len(e[1])) | |
761 self.assertEqual('Series', e[1]['ResourceType']) | |
762 self.assertEqual('f2635388-f01d497a-15f7c06b-ad7dba06-c4c599fe', e[1]['ID']) | |
763 self.assertEqual('/series/f2635388-f01d497a-15f7c06b-ad7dba06-c4c599fe', e[1]['Path']) | |
764 self.assertEqual('1.2.840.113619.2.176.2025.1499492.7391.1171285944.394', e[1][series]) | |
765 self.assertEqual('1.2.840.113619.2.176.2025.1499492.7391.1171285944.390', e[1][study]) | |
766 self.assertEqual('ozp00SjY2xG', e[1][patient]) | |
767 | |
768 self.assertEqual(8, len(e[2])) | |
769 self.assertEqual('Study', e[2]['ResourceType']) | |
770 self.assertEqual('b9c08539-26f93bde-c81ab0d7-bffaf2cb-a4d0bdd0', e[2]['ID']) | |
771 self.assertEqual('/studies/b9c08539-26f93bde-c81ab0d7-bffaf2cb-a4d0bdd0', e[2]['Path']) | |
772 self.assertEqual('1.2.840.113619.2.176.2025.1499492.7391.1171285944.390', e[2][study]) | |
773 self.assertEqual('ozp00SjY2xG', e[2][patient]) | |
774 | |
775 self.assertEqual(7, len(e[3])) | |
776 self.assertEqual('Patient', e[3]['ResourceType']) | |
777 self.assertEqual('6816cb19-844d5aee-85245eba-28e841e6-2414fae2', e[3]['ID']) | |
778 self.assertEqual('/patients/6816cb19-844d5aee-85245eba-28e841e6-2414fae2', e[3]['Path']) | |
779 self.assertEqual('ozp00SjY2xG', e[3][patient]) | |
780 | |
781 DropOrthanc(_REMOTE) | |
782 self.assertEqual(0, len(DoGet(_REMOTE, '/exports')['Exports'])) | |
783 | |
784 | |
785 def test_store_peer(self): | |
786 self.assertEqual(0, len(DoGet(_LOCAL, '/exports')['Exports'])) | |
787 self.assertEqual(0, len(DoGet(_REMOTE, '/exports')['Exports'])) | |
788 | |
789 i = UploadInstance(_REMOTE, 'DummyCT.dcm')['ID'] | |
790 self.assertEqual(0, len(DoGet(_LOCAL, '/patients'))) | |
791 self.assertEqual(1, len(DoGet(_REMOTE, '/patients'))) | |
792 | |
793 j = DoPost(_REMOTE, '/peers/peer/store', str(i), 'text/plain') | |
794 self.assertEqual(1, len(DoGet(_LOCAL, '/patients'))) | |
795 self.assertEqual(1, len(DoGet(_REMOTE, '/patients'))) | |
796 | |
797 self.assertEqual(1, len(DoGet(_REMOTE, '/exports')['Exports'])) | |
798 | |
799 DropOrthanc(_REMOTE) | |
800 self.assertEqual(0, len(DoGet(_REMOTE, '/exports')['Exports'])) | |
801 | |
802 | |
803 def test_bulk_storescu(self): | |
804 self.assertEqual(0, len(DoGet(_LOCAL, '/patients'))) | |
805 | |
806 a = UploadInstance(_REMOTE, 'Knee/T1/IM-0001-0001.dcm') | |
807 b = UploadInstance(_REMOTE, 'Knee/T2/IM-0001-0001.dcm') | |
808 | |
809 j = DoPost(_REMOTE, '/modalities/orthanctest/store', [ a['ID'], b['ID'] ], 'application/json') | |
810 self.assertEqual(2, len(DoGet(_LOCAL, '/instances'))) | |
811 | |
812 DropOrthanc(_LOCAL) | |
813 | |
814 # Send using patient's UUID | |
815 self.assertEqual(0, len(DoGet(_LOCAL, '/instances'))) | |
816 j = DoPost(_REMOTE, '/modalities/orthanctest/store', | |
817 [ 'ca29faea-b6a0e17f-067743a1-8b778011-a48b2a17' ], 'application/json') | |
818 self.assertEqual(2, len(DoGet(_LOCAL, '/instances'))) | |
819 | |
820 | |
821 def test_color(self): | |
822 i = UploadInstance(_REMOTE, 'ColorTestMalaterre.dcm')['ID'] | |
823 im = GetImage(_REMOTE, '/instances/%s/preview' % i) | |
824 self.assertEqual("RGB", im.mode) | |
825 self.assertEqual(41, im.size[0]) | |
826 self.assertEqual(41, im.size[1]) | |
827 | |
828 # http://effbot.org/zone/pil-comparing-images.htm | |
13 | 829 truth = Image.open(GetDatabasePath('ColorTestMalaterre.png')) |
11 | 830 self.assertTrue(ImageChops.difference(im, truth).getbbox() is None) |
831 | |
832 | |
12 | 833 def test_faking_ruby_put(self): |
834 UploadInstance(_REMOTE, 'Knee/T1/IM-0001-0001.dcm') | |
835 UploadInstance(_REMOTE, 'Brainix/Flair/IM-0001-0001.dcm') | |
836 self.assertEqual(2, len(DoGet(_REMOTE, '/patients'))) | |
837 a = DoGet(_REMOTE, '/patients')[0] | |
838 b = DoGet(_REMOTE, '/patients')[1] | |
839 self.assertEqual(0, DoGet(_REMOTE, '/patients/%s/protected' % a)) | |
840 DoGet(_REMOTE, '/patients/%s/protected' % a, data = { '_method' : 'PUT' }, body = '0') | |
841 self.assertEqual(0, DoGet(_REMOTE, '/patients/%s/protected' % a)) | |
842 DoGet(_REMOTE, '/patients/%s/protected' % a, data = { '_method' : 'PUT' }, body = '1') | |
843 self.assertEqual(1, DoGet(_REMOTE, '/patients/%s/protected' % a)) | |
844 DoGet(_REMOTE, '/patients/%s/protected' % a, data = { '_method' : 'PUT' }, body = '0') | |
845 self.assertEqual(0, DoGet(_REMOTE, '/patients/%s/protected' % a)) | |
846 | |
847 | |
848 def test_faking_ruby_delete(self): | |
849 UploadInstance(_REMOTE, 'Knee/T1/IM-0001-0001.dcm') | |
850 UploadInstance(_REMOTE, 'Brainix/Flair/IM-0001-0001.dcm') | |
851 self.assertEqual(2, len(DoGet(_REMOTE, '/patients'))) | |
852 a = DoGet(_REMOTE, '/patients')[0] | |
853 b = DoGet(_REMOTE, '/patients')[1] | |
854 DoGet(_REMOTE, '/patients/%s' % a, data = { '_method' : 'DELETE' }) | |
855 self.assertEqual(1, len(DoGet(_REMOTE, '/patients'))) | |
856 DoGet(_REMOTE, '/patients/%s' % b, data = { '_method' : 'DELETE' }) | |
857 self.assertEqual(0, len(DoGet(_REMOTE, '/patients'))) | |
858 | |
859 | |
860 def test_faking_google_put(self): | |
861 UploadInstance(_REMOTE, 'Knee/T1/IM-0001-0001.dcm') | |
862 UploadInstance(_REMOTE, 'Brainix/Flair/IM-0001-0001.dcm') | |
863 self.assertEqual(2, len(DoGet(_REMOTE, '/patients'))) | |
864 a = DoGet(_REMOTE, '/patients')[0] | |
865 b = DoGet(_REMOTE, '/patients')[1] | |
866 self.assertEqual(0, DoGet(_REMOTE, '/patients/%s/protected' % a)) | |
867 DoPost(_REMOTE, '/patients/%s/protected' % a, headers = { 'X-HTTP-Method-Override' : 'PUT' }, data = '0') | |
868 self.assertEqual(0, DoGet(_REMOTE, '/patients/%s/protected' % a)) | |
869 DoPost(_REMOTE, '/patients/%s/protected' % a, headers = { 'X-HTTP-Method-Override' : 'PUT' }, data = '1') | |
870 self.assertEqual(1, DoGet(_REMOTE, '/patients/%s/protected' % a)) | |
871 DoPost(_REMOTE, '/patients/%s/protected' % a, headers = { 'X-HTTP-Method-Override' : 'PUT' }, data = '0') | |
872 self.assertEqual(0, DoGet(_REMOTE, '/patients/%s/protected' % a)) | |
873 | |
874 | |
875 def test_faking_google_delete(self): | |
876 UploadInstance(_REMOTE, 'Knee/T1/IM-0001-0001.dcm') | |
877 UploadInstance(_REMOTE, 'Brainix/Flair/IM-0001-0001.dcm') | |
878 self.assertEqual(2, len(DoGet(_REMOTE, '/patients'))) | |
879 a = DoGet(_REMOTE, '/patients')[0] | |
880 b = DoGet(_REMOTE, '/patients')[1] | |
881 DoPost(_REMOTE, '/patients/%s' % a, headers = { 'X-HTTP-Method-Override' : 'DELETE' }) | |
882 self.assertEqual(1, len(DoGet(_REMOTE, '/patients'))) | |
883 DoPost(_REMOTE, '/patients/%s' % b, headers = { 'X-HTTP-Method-Override' : 'DELETE' }) | |
884 self.assertEqual(0, len(DoGet(_REMOTE, '/patients'))) | |
885 | |
886 | |
887 def test_lua(self): | |
888 self.assertEqual(42, DoPost(_REMOTE, '/tools/execute-script', 'print(42)')) | |
889 self.assertTrue(IsDefinedInLua(_REMOTE, 'PrintRecursive')) | |
890 self.assertFalse(IsDefinedInLua(_REMOTE, 'HelloWorld')) | |
891 | |
892 | |
893 def test_metadata(self): | |
894 UploadInstance(_REMOTE, 'Knee/T1/IM-0001-0001.dcm') | |
895 p = DoGet(_REMOTE, '/patients')[0] | |
896 i = DoGet(_REMOTE, '/instances')[0] | |
897 | |
898 m = DoGet(_REMOTE, '/patients/%s/metadata' % p) | |
899 self.assertEqual(1, len(m)) | |
900 self.assertEqual('LastUpdate', m[0]) | |
901 | |
902 m = DoGet(_REMOTE, '/instances/%s/metadata' % i) | |
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903 self.assertEqual(4, len(m)) |
12 | 904 self.assertTrue('IndexInSeries' in m) |
905 self.assertTrue('ReceptionDate' in m) | |
906 self.assertTrue('RemoteAET' in m) | |
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907 self.assertTrue('Origin' in m) |
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908 self.assertEqual(DoGet(_REMOTE, '/instances/%s/metadata/IndexInSeries' % i), 1) |
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909 self.assertEqual(DoGet(_REMOTE, '/instances/%s/metadata/Origin' % i), 'RestApi') |
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910 self.assertEqual(DoGet(_REMOTE, '/instances/%s/metadata/RemoteAET' % i), '') # None, received by REST API |
12 | 911 |
912 # Play with custom metadata | |
913 DoPut(_REMOTE, '/patients/%s/metadata/5555' % p, 'coucou') | |
914 m = DoGet(_REMOTE, '/patients/%s/metadata' % p) | |
915 self.assertEqual(2, len(m)) | |
916 self.assertTrue('LastUpdate' in m) | |
917 self.assertTrue('5555' in m) | |
918 self.assertEqual('coucou', DoGet(_REMOTE, '/patients/%s/metadata/5555' % p)) | |
919 DoPut(_REMOTE, '/patients/%s/metadata/5555' % p, 'hello') | |
920 self.assertEqual('hello', DoGet(_REMOTE, '/patients/%s/metadata/5555' % p)) | |
921 DoDelete(_REMOTE, '/patients/%s/metadata/5555' % p) | |
922 m = DoGet(_REMOTE, '/patients/%s/metadata' % p) | |
923 self.assertEqual(1, len(m)) | |
924 self.assertTrue('LastUpdate' in m) | |
13 | 925 |
926 | |
927 def test_statistics(self): | |
928 # Upload 16 instances | |
929 for i in range(4): | |
930 UploadInstance(_REMOTE, 'Brainix/Flair/IM-0001-000%d.dcm' % (i + 1)) | |
931 UploadInstance(_REMOTE, 'Brainix/Epi/IM-0001-000%d.dcm' % (i + 1)) | |
932 UploadInstance(_REMOTE, 'Knee/T1/IM-0001-000%d.dcm' % (i + 1)) | |
933 UploadInstance(_REMOTE, 'Knee/T2/IM-0001-000%d.dcm' % (i + 1)) | |
934 | |
935 s = DoGet(_REMOTE, '/statistics') | |
936 self.assertEqual(16, s['CountInstances']) | |
937 self.assertEqual(2, s['CountPatients']) | |
938 self.assertEqual(2, s['CountStudies']) | |
939 self.assertEqual(4, s['CountSeries']) | |
940 d = int(s['TotalUncompressedSize']) | |
941 | |
942 e = 0 | |
943 for patient in DoGet(_REMOTE, '/patients'): | |
944 s = DoGet(_REMOTE, '/patients/%s/statistics' % patient) | |
945 self.assertEqual(8, s['CountInstances']) | |
946 self.assertEqual(1, s['CountStudies']) | |
947 self.assertEqual(2, s['CountSeries']) | |
948 e += int(s['UncompressedSize']) | |
949 | |
950 for study in DoGet(_REMOTE, '/studies'): | |
951 s = DoGet(_REMOTE, '/studies/%s/statistics' % study) | |
952 self.assertEqual(8, s['CountInstances']) | |
953 self.assertEqual(2, s['CountSeries']) | |
954 e += int(s['UncompressedSize']) | |
955 | |
956 for series in DoGet(_REMOTE, '/series'): | |
957 s = DoGet(_REMOTE, '/series/%s/statistics' % series) | |
958 self.assertEqual(4, s['CountInstances']) | |
959 e += int(s['UncompressedSize']) | |
960 | |
961 self.assertEqual(3 * d, e) | |
962 | |
963 | |
964 def test_custom_attachment(self): | |
965 UploadInstance(_REMOTE, 'Brainix/Flair/IM-0001-0001.dcm') | |
966 patient = DoGet(_REMOTE, '/patients')[0] | |
967 instance = DoGet(_REMOTE, '/instances')[0] | |
968 size = int(DoGet(_REMOTE, '/patients/%s/statistics' % patient)['DiskSize']) | |
969 self.assertEqual(size, int(DoGet(_REMOTE, '/statistics')['TotalDiskSize'])) | |
970 | |
971 self.assertEqual(0, len(DoGet(_REMOTE, '/patients/%s/attachments' % patient))) | |
972 self.assertEqual(2, len(DoGet(_REMOTE, '/instances/%s/attachments' % instance))) | |
973 self.assertTrue('dicom' in DoGet(_REMOTE, '/instances/%s/attachments' % instance)) | |
974 self.assertTrue('dicom-as-json' in DoGet(_REMOTE, '/instances/%s/attachments' % instance)) | |
975 | |
976 self.assertRaises(Exception, lambda: DoPut(_REMOTE, '/patients/%s/attachments/22' % patient, 'hello')) | |
977 hello = 'hellohellohellohellohellohellohellohellohello' | |
978 DoPut(_REMOTE, '/patients/%s/attachments/1025' % patient, hello) | |
979 self.assertEqual(int(DoGet(_REMOTE, '/patients/%s/statistics' % patient)['DiskSize']), | |
980 int(DoGet(_REMOTE, '/statistics')['TotalDiskSize'])) | |
981 self.assertEqual(int(DoGet(_REMOTE, '/patients/%s/statistics' % patient)['DiskSize']), | |
982 size + int(DoGet(_REMOTE, '/patients/%s/attachments/1025/compressed-size' % patient))) | |
983 | |
984 DoPut(_REMOTE, '/patients/%s/attachments/1026' % patient, 'world') | |
985 self.assertEqual(int(DoGet(_REMOTE, '/patients/%s/statistics' % patient)['DiskSize']), | |
986 int(DoGet(_REMOTE, '/statistics')['TotalDiskSize'])) | |
987 self.assertEqual(int(DoGet(_REMOTE, '/patients/%s/statistics' % patient)['DiskSize']), | |
988 size + | |
989 int(DoGet(_REMOTE, '/patients/%s/attachments/1025/compressed-size' % patient)) + | |
990 int(DoGet(_REMOTE, '/patients/%s/attachments/1026/compressed-size' % patient))) | |
991 | |
992 self.assertEqual(2, len(DoGet(_REMOTE, '/patients/%s/attachments' % patient))) | |
993 self.assertEqual(hello, DoGet(_REMOTE, '/patients/%s/attachments/1025/data' % patient)) | |
994 self.assertEqual('world', DoGet(_REMOTE, '/patients/%s/attachments/1026/data' % patient)) | |
995 DoPost(_REMOTE, '/patients/%s/attachments/1025/verify-md5' % patient) | |
996 DoPost(_REMOTE, '/patients/%s/attachments/1026/verify-md5' % patient) | |
997 DoPut(_REMOTE, '/patients/%s/attachments/1026' % patient, 'world2') | |
998 self.assertEqual('world2', DoGet(_REMOTE, '/patients/%s/attachments/1026/data' % patient)) | |
999 | |
1000 self.assertRaises(Exception, lambda: DoDelete(_REMOTE, '/instances/%s/attachments/dicom' % instance)) | |
1001 DoDelete(_REMOTE, '/patients/%s/attachments/1025' % patient) | |
1002 self.assertEqual(int(DoGet(_REMOTE, '/patients/%s/statistics' % patient)['DiskSize']), | |
1003 int(DoGet(_REMOTE, '/statistics')['TotalDiskSize'])) | |
1004 self.assertEqual(int(DoGet(_REMOTE, '/patients/%s/statistics' % patient)['DiskSize']), | |
1005 size + int(DoGet(_REMOTE, '/patients/%s/attachments/1026/compressed-size' % patient))) | |
1006 | |
1007 self.assertEqual(1, len(DoGet(_REMOTE, '/patients/%s/attachments' % patient))) | |
1008 DoDelete(_REMOTE, '/patients/%s/attachments/1026' % patient) | |
1009 self.assertEqual(0, len(DoGet(_REMOTE, '/patients/%s/attachments' % patient))) | |
1010 | |
1011 self.assertEqual(int(DoGet(_REMOTE, '/patients/%s/statistics' % patient)['DiskSize']), size) | |
1012 self.assertEqual(size, int(DoGet(_REMOTE, '/statistics')['TotalDiskSize'])) | |
1013 | |
1014 | |
1015 def test_incoming_storescu(self): | |
1016 self.assertEqual(0, len(DoGet(_REMOTE, '/patients'))) | |
45 | 1017 subprocess.check_call([ FindExecutable('storescu'), |
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1018 _REMOTE['Server'], str(_REMOTE['DicomPort']), |
13 | 1019 GetDatabasePath('ColorTestImageJ.dcm') ]) |
1020 self.assertEqual(1, len(DoGet(_REMOTE, '/patients'))) | |
1021 | |
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1022 i = DoGet(_REMOTE, '/instances') |
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1023 self.assertEqual(1, len(i)) |
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1024 m = DoGet(_REMOTE, '/instances/%s/metadata' % i[0]) |
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1025 self.assertEqual(4, len(m)) |
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1026 self.assertTrue('IndexInSeries' in m) |
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1027 self.assertTrue('ReceptionDate' in m) |
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1028 self.assertTrue('RemoteAET' in m) |
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1029 self.assertTrue('Origin' in m) |
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1030 self.assertEqual(DoGet(_REMOTE, '/instances/%s/metadata/IndexInSeries' % i[0]), 1) |
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1031 self.assertEqual(DoGet(_REMOTE, '/instances/%s/metadata/Origin' % i[0]), 'DicomProtocol') |
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1032 self.assertEqual(DoGet(_REMOTE, '/instances/%s/metadata/RemoteAET' % i[0]), 'STORESCU') |
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1033 |
13 | 1034 |
1035 def test_incoming_findscu(self): | |
1036 def CallFindScu(args): | |
45 | 1037 p = subprocess.Popen([ FindExecutable('findscu'), |
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1038 '-P', '-aec', _REMOTE['DicomAet'], '-aet', _LOCAL['DicomAet'], |
13 | 1039 _REMOTE['Server'], str(_REMOTE['DicomPort']) ] + args, |
1040 stderr=subprocess.PIPE) | |
1041 return p.communicate()[1] | |
1042 | |
1043 UploadInstance(_REMOTE, 'Multiframe.dcm') | |
1044 UploadInstance(_REMOTE, 'ColorTestImageJ.dcm') | |
1045 | |
1046 i = CallFindScu([ '-k', '0008,0052=PATIENT', '-k', '0010,0010' ]) | |
1047 patientNames = re.findall('\(0010,0010\).*?\[(.*?)\]', i) | |
1048 self.assertEqual(2, len(patientNames)) | |
1049 self.assertTrue('Test Patient BG ' in patientNames) | |
1050 self.assertTrue('Anonymized' in patientNames) | |
1051 | |
1052 i = CallFindScu([ '-k', '0008,0052=SERIES', '-k', '0008,0021' ]) | |
1053 series = re.findall('\(0008,0021\).*?\[\s*(.*?)\s*\]', i) | |
1054 self.assertEqual(2, len(series)) | |
1055 self.assertTrue('20070208' in series) | |
1056 self.assertTrue('19980312' in series) | |
1057 | |
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1058 i = CallFindScu([ '-k', '0008,0052=SERIES', '-k', '0008,0021', '-k', 'ModalitiesInStudy=MR\\XA' ]) |
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1059 series = re.findall('\(0008,0021\).*?\[\s*(.*?)\s*\]', i) |
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1060 self.assertEqual(1, len(series)) |
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1061 self.assertTrue('19980312' in series) |
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1062 |
13 | 1063 i = CallFindScu([ '-k', '0008,0052=SERIES', '-k', 'PatientName=Anonymized' ]) |
1064 series = re.findall('\(0010,0010\).*?\[\s*(.*?)\s*\]', i) | |
1065 self.assertEqual(1, len(series)) | |
1066 | |
1067 # Test the "CaseSentitivePN" flag (false by default) | |
1068 i = CallFindScu([ '-k', '0008,0052=SERIES', '-k', 'PatientName=anonymized' ]) | |
1069 series = re.findall('\(0010,0010\).*?\[\s*(.*?)\s*\]', i) | |
1070 self.assertEqual(1, len(series)) | |
1071 | |
1072 | |
1073 def test_incoming_movescu(self): | |
1074 UploadInstance(_REMOTE, 'Multiframe.dcm') | |
1075 | |
1076 self.assertEqual(0, len(DoGet(_LOCAL, '/patients'))) | |
17 | 1077 CallMoveScu([ '--patient', '-k', '0008,0052=PATIENT', '-k', 'PatientID=none' ]) |
13 | 1078 self.assertEqual(0, len(DoGet(_LOCAL, '/patients'))) |
1079 CallMoveScu([ '--patient', '-k', '0008,0052=PATIENT', '-k', 'PatientID=12345678' ]) | |
1080 self.assertEqual(1, len(DoGet(_LOCAL, '/patients'))) | |
1081 | |
1082 | |
1083 def test_findscu(self): | |
1084 i = UploadInstance(_REMOTE, 'DummyCT.dcm')['ID'] | |
1085 j = UploadInstance(_REMOTE, 'Issue22.dcm')['ID'] | |
1086 k = UploadInstance(_REMOTE, 'ColorTestImageJ.dcm')['ID'] | |
1087 DoPost(_REMOTE, '/modalities/orthanctest/store', str(i), 'text/plain') | |
1088 | |
1089 # Test the "find-patient" level | |
1090 p = DoPost(_REMOTE, '/modalities/orthanctest/find-patient', { }) | |
1091 self.assertEqual(1, len(p)) | |
1092 self.assertEqual('ozp00SjY2xG', p[0]['PatientID']) | |
1093 | |
1094 # Test wildcards constraints. The "LO" value representation | |
1095 # for PatientID is always case-sensitive, but the "PN" for | |
1096 # PatientName might depend on the implementation: | |
1097 # "GenerateConfigurationForTests.py" will force it to be case | |
1098 # insensitive (which was the default until Orthanc 0.8.6). | |
1099 p = DoPost(_REMOTE, '/modalities/orthanctest/find-patient', { 'PatientName' : 'K*' }) | |
1100 self.assertEqual(1, len(p)) | |
1101 | |
1102 p = DoPost(_REMOTE, '/modalities/orthanctest/find-patient', { 'PatientName' : 'k*' }) | |
1103 self.assertEqual(1, len(p)) | |
1104 | |
1105 p = DoPost(_REMOTE, '/modalities/orthanctest/find-patient', { 'PatientID' : 'ozp*' }) | |
1106 self.assertEqual(1, len(p)) | |
1107 | |
1108 p = DoPost(_REMOTE, '/modalities/orthanctest/find-patient', { 'PatientID' : 'o?p*' }) | |
1109 self.assertEqual(1, len(p)) | |
1110 | |
1111 p = DoPost(_REMOTE, '/modalities/orthanctest/find-patient', { 'PatientID' : '0?q*' }) | |
1112 self.assertEqual(0, len(p)) | |
1113 | |
1114 p = DoPost(_REMOTE, '/modalities/orthanctest/find-patient', { 'PatientName' : 'B*' }) | |
1115 self.assertEqual(0, len(p)) | |
1116 | |
1117 p = DoPost(_REMOTE, '/modalities/orthanctest/find-patient', { 'PatientName' : 'b*' }) | |
1118 self.assertEqual(0, len(p)) | |
1119 | |
1120 DoPost(_REMOTE, '/modalities/orthanctest/store', str(j), 'text/plain') | |
1121 DoPost(_REMOTE, '/modalities/orthanctest/store', str(k), 'text/plain') | |
1122 DoPost(_REMOTE, '/modalities/orthanctest/find-patient', { }) | |
1123 self.assertEqual(3, len(DoPost(_REMOTE, '/modalities/orthanctest/find-patient', { }))) | |
1124 | |
1125 p = DoPost(_REMOTE, '/modalities/orthanctest/find-patient', { 'PatientName' : 'A*' }) | |
1126 self.assertEqual(2, len(p)) | |
1127 | |
1128 # Test the "find-study" level. This is the instance "ColorTestImageJ.dcm" | |
1129 s = DoPost(_REMOTE, '/modalities/orthanctest/find-study', { 'PatientID' : 'B9uTHKOZ' }) | |
1130 self.assertEqual(1, len(s)) | |
1131 self.assertEqual('20070208', s[0]['StudyDate']) | |
1132 | |
1133 # Test range searches | |
1134 t = DoPost(_REMOTE, '/modalities/orthanctest/find-study', { 'PatientID' : 'B9uTHKOZ', | |
1135 'StudyDate' : '-20070101' }) | |
1136 self.assertEqual(0, len(t)) | |
1137 | |
1138 t = DoPost(_REMOTE, '/modalities/orthanctest/find-study', { 'PatientID' : 'B9uTHKOZ', | |
1139 'StudyDate' : '20090101-' }) | |
1140 self.assertEqual(0, len(t)) | |
1141 | |
1142 t = DoPost(_REMOTE, '/modalities/orthanctest/find-study', { 'PatientID' : 'B9uTHKOZ', | |
1143 'StudyDate' : '20070101-' }) | |
1144 self.assertEqual(1, len(t)) | |
1145 | |
1146 t = DoPost(_REMOTE, '/modalities/orthanctest/find-study', { 'PatientID' : 'B9uTHKOZ', | |
1147 'StudyDate' : '-20090101' }) | |
1148 self.assertEqual(1, len(t)) | |
1149 | |
1150 t = DoPost(_REMOTE, '/modalities/orthanctest/find-study', { 'PatientID' : 'B9uTHKOZ', | |
1151 'StudyDate' : '20070207-20070207' }) | |
1152 self.assertEqual(0, len(t)) | |
1153 | |
1154 t = DoPost(_REMOTE, '/modalities/orthanctest/find-study', { 'PatientID' : 'B9uTHKOZ', | |
1155 'StudyDate' : '20070208-20070208' }) | |
1156 self.assertEqual(1, len(t)) | |
1157 | |
1158 t = DoPost(_REMOTE, '/modalities/orthanctest/find-study', { 'PatientID' : 'B9uTHKOZ', | |
1159 'StudyDate' : '20070209-20070209' }) | |
1160 self.assertEqual(0, len(t)) | |
1161 | |
1162 # Test the ModalitiesInStudy tag | |
1163 t = DoPost(_REMOTE, '/modalities/orthanctest/find-study', { | |
1164 'PatientID' : 'B9uTHKOZ', | |
1165 'ModalitiesInStudy' : 'US' }) | |
1166 self.assertEqual(0, len(t)) | |
1167 | |
1168 t = DoPost(_REMOTE, '/modalities/orthanctest/find-study', { | |
1169 'PatientID' : 'B9uTHKOZ', | |
1170 'ModalitiesInStudy' : 'CT' }) | |
1171 self.assertEqual(1, len(t)) | |
1172 | |
1173 t = DoPost(_REMOTE, '/modalities/orthanctest/find-study', { | |
1174 'PatientID' : 'B9uTHKOZ', | |
1175 'ModalitiesInStudy' : 'US\\CT' }) | |
1176 self.assertEqual(1, len(t)) | |
1177 | |
1178 # Test the "find-series" level | |
1179 t = DoPost(_REMOTE, '/modalities/orthanctest/find-series', { | |
1180 'PatientID' : 'B9uTHKOZ', | |
1181 'StudyInstanceUID' : s[0]['StudyInstanceUID'] }) | |
1182 self.assertEqual(1, len(t)) | |
1183 | |
1184 # Test "\" separator | |
1185 t = DoPost(_REMOTE, '/modalities/orthanctest/find-series', { | |
1186 'PatientID' : 'B9uTHKOZ', | |
1187 'StudyInstanceUID' : s[0]['StudyInstanceUID'], | |
1188 'Modality' : 'MR\\CT\\US' }) | |
1189 self.assertEqual(1, len(t)) | |
1190 | |
1191 t = DoPost(_REMOTE, '/modalities/orthanctest/find-series', { | |
1192 'PatientID' : 'B9uTHKOZ', | |
1193 'StudyInstanceUID' : s[0]['StudyInstanceUID'], | |
1194 'Modality' : 'MR\\US' }) | |
1195 self.assertEqual(0, len(t)) | |
1196 | |
1197 | |
1198 def test_update_modalities(self): | |
1199 try: | |
1200 DoDelete(_REMOTE, '/modalities/toto') | |
1201 except: | |
1202 pass | |
1203 try: | |
1204 DoDelete(_REMOTE, '/modalities/tata') | |
1205 except: | |
1206 pass | |
1207 self.assertRaises(Exception, lambda: DoGet(_REMOTE, '/modalities/toto')) | |
1208 DoPut(_REMOTE, '/modalities/toto', [ "STORESCP", "localhost", 2000 ]) | |
1209 DoPut(_REMOTE, '/modalities/tata', [ "STORESCP", "localhost", 2000, 'MedInria' ]) | |
1210 self.assertRaises(Exception, lambda: DoPut(_REMOTE, '/modalities/toto', [ "STORESCP", "localhost", 2000, 'MedInriaaa' ])) | |
1211 self.assertTrue('store' in DoGet(_REMOTE, '/modalities/toto')) | |
1212 self.assertTrue('store' in DoGet(_REMOTE, '/modalities/tata')) | |
1213 DoDelete(_REMOTE, '/modalities/toto') | |
1214 DoDelete(_REMOTE, '/modalities/tata') | |
1215 self.assertRaises(Exception, lambda: DoGet(_REMOTE, '/modalities/toto')) | |
1216 self.assertRaises(Exception, lambda: DoGet(_REMOTE, '/modalities/tata')) | |
1217 | |
1218 | |
1219 def test_update_peers(self): | |
1220 # curl -X PUT http://localhost:8042/peers/toto -d '["http://localhost:8042/"]' -v | |
1221 try: | |
1222 DoDelete(_REMOTE, '/peers/toto') | |
1223 except: | |
1224 pass | |
1225 try: | |
1226 DoDelete(_REMOTE, '/peers/tata') | |
1227 except: | |
1228 pass | |
1229 self.assertRaises(Exception, lambda: DoGet(_REMOTE, '/peers/toto')) | |
1230 DoPut(_REMOTE, '/peers/toto', [ 'http://localhost:8042/' ]) | |
1231 DoPut(_REMOTE, '/peers/tata', [ 'http://localhost:8042/', 'user', 'pass' ]) | |
1232 self.assertRaises(Exception, lambda: DoPut(_REMOTE, '/peers/toto', [ 'http://localhost:8042/', 'a' ])) | |
1233 self.assertRaises(Exception, lambda: DoPut(_REMOTE, '/peers/toto', [ 'http://localhost:8042/', 'a', 'b', 'c' ])) | |
1234 self.assertTrue('store' in DoGet(_REMOTE, '/peers/toto')) | |
1235 self.assertTrue('store' in DoGet(_REMOTE, '/peers/tata')) | |
1236 DoDelete(_REMOTE, '/peers/toto') | |
1237 DoDelete(_REMOTE, '/peers/tata') | |
1238 self.assertRaises(Exception, lambda: DoGet(_REMOTE, '/peers/toto')) | |
1239 self.assertRaises(Exception, lambda: DoGet(_REMOTE, '/peers/tata')) | |
1240 | |
1241 | |
1242 def test_mesterhazy_modification(self): | |
1243 # When I modify a series ( eg. curl | |
1244 # http://localhost:8042/series/uidhere/modify -X POST -d | |
1245 # '{"Replace":{"SeriesDate":"19990101"}}' ) the modified | |
1246 # series is added to a new Study, instead of the existing | |
1247 # Study. Fixed in Orthanc 0.7.5 | |
1248 | |
1249 u = UploadInstance(_REMOTE, 'DummyCT.dcm') | |
1250 study = 'b9c08539-26f93bde-c81ab0d7-bffaf2cb-a4d0bdd0' | |
1251 series = 'f2635388-f01d497a-15f7c06b-ad7dba06-c4c599fe' | |
1252 | |
1253 modified = DoPost(_REMOTE, '/series/%s/modify' % series, | |
1254 json.dumps({ "Replace" : { "SeriesDate" : "19990101" }})) | |
1255 | |
1256 self.assertEqual(study, DoGet(_REMOTE, '/series/%s' % modified['ID']) ['ParentStudy']) | |
1257 | |
1258 | |
1259 def test_create(self): | |
1260 i = DoPost(_REMOTE, '/tools/create-dicom', | |
1261 json.dumps({ | |
1262 'PatientName' : 'Jodogne', | |
1263 'Modality' : 'CT', | |
58 | 1264 'SOPClassUID' : '1.2.840.10008.5.1.4.1.1.1', |
13 | 1265 'PixelData' : 'data:image/png;base64,iVBORw0KGgoAAAANSUhEUgAAAAUAAAAFCAYAAACNbyblAAAAHElEQVQI12P4//8/w38GIAXDIBKE0DHxgljNBAAO9TXL0Y4OHwAAAABJRU5ErkJggg==' # red dot in RGBA |
1266 })) | |
1267 | |
1268 self.assertEqual('Jodogne', DoGet(_REMOTE, '/instances/%s/content/PatientName' % i['ID']).strip()) | |
1269 self.assertEqual('CT', DoGet(_REMOTE, '/instances/%s/content/Modality' % i['ID']).strip()) | |
1270 | |
1271 png = GetImage(_REMOTE, '/instances/%s/preview' % i['ID']) | |
1272 self.assertEqual((5, 5), png.size) | |
1273 | |
38 | 1274 j = DoGet(_REMOTE, i['Path']) |
1275 self.assertEqual('Instance', j['Type']) | |
1276 self.assertEqual(j['ID'], i['ID']) | |
1277 | |
13 | 1278 |
1279 def test_pilates(self): | |
1280 # "SCU failed error when accessing orthanc with osirix" by | |
1281 # Pilates Agentur (Mar 10, 2014 at 9:33 PM) | |
1282 i = UploadInstance(_REMOTE, 'PilatesArgenturGEUltrasoundOsiriX.dcm')['ID'] | |
1283 self.assertEqual(0, len(DoGet(_LOCAL, '/patients'))) | |
1284 j = DoPost(_REMOTE, '/modalities/orthanctest/store', str(i), 'text/plain') | |
1285 self.assertEqual(1, len(DoGet(_LOCAL, '/patients'))) | |
1286 | |
1287 | |
1288 def test_shared_tags(self): | |
1289 a = UploadInstance(_REMOTE, 'Knee/T1/IM-0001-0001.dcm')['ID'] | |
1290 b = UploadInstance(_REMOTE, 'Knee/T1/IM-0001-0002.dcm')['ID'] | |
1291 p = DoGet(_REMOTE, '/patients')[0] | |
1292 | |
1293 self.assertTrue('0010,0010' in DoGet(_REMOTE, '/patients/%s/shared-tags' % p)) | |
1294 self.assertTrue('PatientName' in DoGet(_REMOTE, '/patients/%s/shared-tags?simplify' % p)) | |
1295 self.assertTrue('0008,1030' in DoGet(_REMOTE, '/patients/%s/shared-tags' % p)) | |
1296 self.assertTrue('StudyDescription' in DoGet(_REMOTE, '/patients/%s/shared-tags?simplify' % p)) | |
1297 self.assertTrue('0008,103e' in DoGet(_REMOTE, '/patients/%s/shared-tags' % p)) | |
1298 self.assertTrue('SeriesDescription' in DoGet(_REMOTE, '/patients/%s/shared-tags?simplify' % p)) | |
1299 self.assertFalse('0008,0018' in DoGet(_REMOTE, '/patients/%s/shared-tags' % p)) | |
1300 self.assertFalse('SOPInstanceUID' in DoGet(_REMOTE, '/patients/%s/shared-tags?simplify' % p)) | |
1301 | |
1302 self.assertTrue('0008,0018' in DoGet(_REMOTE, '/instances/%s/tags' % a)) | |
1303 self.assertTrue('SOPInstanceUID' in DoGet(_REMOTE, '/instances/%s/tags?simplify' % a)) | |
1304 | |
1305 | |
1306 def test_modules(self): | |
1307 a = UploadInstance(_REMOTE, 'Knee/T1/IM-0001-0001.dcm')['ID'] | |
1308 p = DoGet(_REMOTE, '/patients')[0] | |
1309 s = DoGet(_REMOTE, '/studies')[0] | |
1310 t = DoGet(_REMOTE, '/series')[0] | |
1311 | |
1312 self.assertTrue('0010,0010' in DoGet(_REMOTE, '/patients/%s/module' % p)) | |
1313 self.assertTrue('PatientName' in DoGet(_REMOTE, '/patients/%s/module?simplify' % p)) | |
1314 self.assertTrue('0010,0010' in DoGet(_REMOTE, '/studies/%s/module-patient' % p)) | |
1315 self.assertTrue('PatientName' in DoGet(_REMOTE, '/studies/%s/module-patient?simplify' % p)) | |
1316 self.assertTrue('0008,1030' in DoGet(_REMOTE, '/studies/%s/module' % s)) | |
1317 self.assertTrue('StudyDescription' in DoGet(_REMOTE, '/studies/%s/module?simplify' % s)) | |
1318 self.assertTrue('0008,103e' in DoGet(_REMOTE, '/series/%s/module' % p)) | |
1319 self.assertTrue('SeriesDescription' in DoGet(_REMOTE, '/series/%s/module?simplify' % p)) | |
1320 self.assertTrue('0008,0018' in DoGet(_REMOTE, '/instances/%s/module' % a)) | |
1321 self.assertTrue('SOPInstanceUID' in DoGet(_REMOTE, '/instances/%s/module?simplify' % a)) | |
1322 | |
1323 | |
1324 def test_auto_directory(self): | |
1325 a = UploadInstance(_REMOTE, 'Knee/T1/IM-0001-0001.dcm')['ID'] | |
1326 self.assertTrue('now' in DoGet(_REMOTE, '/tools')) | |
1327 self.assertTrue('dicom-conformance' in DoGet(_REMOTE, '/tools')) | |
1328 self.assertTrue(len(DoGet(_REMOTE, '/tools/dicom-conformance')) > 1000) | |
1329 self.assertTrue('orthanctest' in DoGet(_REMOTE, '/modalities')) | |
1330 self.assertTrue('echo' in DoGet(_REMOTE, '/modalities/orthanctest')) | |
1331 self.assertTrue('find' in DoGet(_REMOTE, '/modalities/orthanctest')) | |
1332 self.assertTrue('find-instance' in DoGet(_REMOTE, '/modalities/orthanctest')) | |
1333 self.assertTrue('find-patient' in DoGet(_REMOTE, '/modalities/orthanctest')) | |
1334 self.assertTrue('find-series' in DoGet(_REMOTE, '/modalities/orthanctest')) | |
1335 self.assertTrue('find-study' in DoGet(_REMOTE, '/modalities/orthanctest')) | |
1336 self.assertTrue('store' in DoGet(_REMOTE, '/modalities/orthanctest')) | |
1337 self.assertTrue('store' in DoGet(_REMOTE, '/peers/peer')) | |
1338 self.assertTrue('matlab' in DoGet(_REMOTE, '/instances/%s/frames/0' % a)) | |
1339 self.assertRaises(Exception, lambda: DoGet(_REMOTE, '/tools/nope')) | |
28 | 1340 self.assertRaises(Exception, lambda: DoGet(_REMOTE, '/nope')) |
1341 self.assertRaises(Exception, lambda: DoGet(_REMOTE, '/nope/nope.html')) | |
1342 self.assertEqual(404, DoGetRaw(_REMOTE, '/nope')[0].status) | |
1343 self.assertEqual(404, DoGetRaw(_REMOTE, '/nope/nope.html')[0].status) | |
13 | 1344 |
1345 | |
1346 def test_echo(self): | |
1347 DoPost(_REMOTE, '/modalities/orthanctest/echo') | |
1348 | |
1349 | |
1350 def test_xml(self): | |
1351 json = DoGet(_REMOTE, '/tools', headers = { 'accept' : 'application/json' }) | |
1352 xml = minidom.parseString(DoGet(_REMOTE, '/tools', headers = { 'accept' : 'application/xml' })) | |
1353 items = xml.getElementsByTagName('root')[0].getElementsByTagName('item') | |
1354 self.assertEqual(len(items), len(json)) | |
1355 | |
1356 self.assertTrue('dicom-conformance' in json) | |
1357 | |
1358 ok = False | |
1359 for i in items: | |
1360 if i.childNodes[0].data == 'dicom-conformance': | |
1361 ok = True | |
1362 self.assertTrue(ok) | |
1363 | |
1364 | |
46
85b2e36ed392
explicit GoogleCode source
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
45
diff
changeset
|
1365 def test_googlecode_issue_16(self): |
13 | 1366 i = UploadInstance(_REMOTE, 'Issue16.dcm')['ID'] |
1367 t = DoGet(_REMOTE, '/instances/%s/tags?simplify' % i)['FrameIncrementPointer'] | |
1368 self.assertEqual('0018,1063', t) | |
1369 | |
1370 | |
46
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Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
changeset
|
1371 def test_googlecode_issue_22(self): |
13 | 1372 s = UploadInstance(_REMOTE, 'Issue22.dcm')['ID'] |
1373 a = [ | |
1374 "f804691f62197040438f4627c6b994f1", # Frame 0 | |
1375 "c69eee9a51eea3e8611e82e578897254", | |
1376 "315666be83e2d0111c77bc0996d84901", | |
1377 "3e27aa959d911172c48a1436443c72b1", | |
1378 "958642c9e7e9d232d3869faff546058c", | |
1379 "5e7ea8e3e4230cae707d143481355c59", | |
1380 "eda37f83558d858a596175aed8b2ad47", | |
1381 "486713bd2895c4ecbe0e97715ac7f80a", | |
1382 "091ef729eb169e67da8a0faa9631f9a8", | |
1383 "5aa2b8c7ffe0a483efaa8e12417686ca", | |
1384 "e2f39e85896fe58876654b94cd0b5013", | |
1385 "6fd2129e4950abbe1be053bc814d5da8", | |
1386 "c3331a8ba7a757f3d423735ab7fa81f9", | |
1387 "746f808582156734dd6b6fdfd3a0b72c", | |
1388 "8075ea2b227a70c60ea6b7b75a6bb190", | |
1389 "806b8b3e300c615099c11a5ec23465aa", | |
1390 "7c836aa298ba6eef96434579af631a11", | |
1391 "a0357dc9f4f72d73a885c33d7c287446", | |
1392 "f25ba3be1cc7d7fad95706adc199ea7d", | |
1393 "8b114c526b8cbed6cad8a3248b7b480c", | |
1394 "44e6670f127e612a2b4aa60a0d207698", | |
1395 "b8945f90fe02facf2ace24ca1ecbe0a5", | |
1396 "95c796c2fa8f59018b15cf2987b1f79b", | |
1397 "ce0a51ab30224205b44920221dc27351", # Frame 23 | |
1398 ] | |
1399 | |
1400 self.assertEqual(24, len(DoGet(_REMOTE, '/instances/%s/frames' % s))) | |
1401 self.assertRaises(Exception, lambda: DoGet(_REMOTE, '/instances/%s/frames/24/preview' % s)) | |
1402 | |
1403 for i in range(len(a)): | |
1404 self.assertEqual(a[i], ComputeMD5(DoGet(_REMOTE, '/instances/%s/frames/%d/preview' % (s, i)))) | |
1405 | |
1406 | |
46
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parents:
45
diff
changeset
|
1407 def test_googlecode_issue_19(self): |
21
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tests of image decoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
18
diff
changeset
|
1408 # This is an image with "YBR_FULL" photometric interpretation, it is not supported by Orthanc |
13 | 1409 # gdcmconv -i /home/jodogne/DICOM/GdcmDatabase/US_DataSet/HDI5000_US/3EAF5E01 -w -o Issue19.dcm |
1410 | |
1411 a = UploadInstance(_REMOTE, 'Issue19.dcm')['ID'] | |
21
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tests of image decoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
18
diff
changeset
|
1412 self.assertRaises(Exception, lambda: DoGet(_REMOTE, '/instances/941ad3c8-05d05b88-560459f9-0eae0e20-6cddd533/preview')) |
13 | 1413 |
1414 | |
46
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Sebastien Jodogne <s.jodogne@gmail.com>
parents:
45
diff
changeset
|
1415 def test_googlecode_issue_37(self): |
13 | 1416 # Same test for issues 35 and 37. Fixed in Orthanc 0.9.1 |
1417 u = UploadInstance(_REMOTE, 'Beaufix/IM-0001-0001.dcm')['ID'] | |
1418 | |
1419 a = DoPost(_REMOTE, '/tools/find', { 'Level' : 'Series', | |
1420 'CaseSensitive' : True, | |
1421 'Query' : { 'StationName' : 'SMR4-MP3' }}) | |
1422 self.assertEqual(1, len(a)) | |
14 | 1423 |
1424 | |
1425 def test_rest_find(self): | |
1426 # Upload 8 instances | |
1427 for i in range(2): | |
1428 UploadInstance(_REMOTE, 'Brainix/Flair/IM-0001-000%d.dcm' % (i + 1)) | |
1429 UploadInstance(_REMOTE, 'Brainix/Epi/IM-0001-000%d.dcm' % (i + 1)) | |
1430 UploadInstance(_REMOTE, 'Knee/T1/IM-0001-000%d.dcm' % (i + 1)) | |
1431 UploadInstance(_REMOTE, 'Knee/T2/IM-0001-000%d.dcm' % (i + 1)) | |
1432 | |
1433 a = DoPost(_REMOTE, '/tools/find', { 'Level' : 'Patient', | |
1434 'CaseSensitive' : False, | |
1435 'Query' : { 'PatientName' : '*n*' }}) | |
1436 self.assertEqual(2, len(a)) | |
1437 | |
1438 a = DoPost(_REMOTE, '/tools/find', { 'Level' : 'Patient', | |
1439 'CaseSensitive' : True, | |
1440 'Query' : { 'PatientName' : '*n*' }}) | |
1441 self.assertEqual(0, len(a)) | |
1442 | |
1443 a = DoPost(_REMOTE, '/tools/find', { 'Expand' : True, | |
1444 'Level' : 'Patient', | |
1445 'CaseSensitive' : False, | |
1446 'Query' : { 'PatientName' : '*ne*' }}) | |
1447 self.assertEqual(1, len(a)) | |
1448 self.assertEqual('20080822', a[0]['MainDicomTags']['PatientBirthDate']) | |
1449 | |
1450 a = DoPost(_REMOTE, '/tools/find', { 'Level' : 'Patient', | |
1451 'CaseSensitive' : True, | |
1452 'Query' : { 'PatientName' : '*ne*' }}) | |
1453 self.assertEqual(0, len(a)) | |
1454 | |
1455 a = DoPost(_REMOTE, '/tools/find', { 'Level' : 'Study', | |
1456 'CaseSensitive' : True, | |
1457 'Query' : { 'PatientName' : '*NE*' }}) | |
1458 self.assertEqual(1, len(a)) | |
1459 | |
1460 a = DoPost(_REMOTE, '/tools/find', { 'Level' : 'Series', | |
1461 'CaseSensitive' : True, | |
1462 'Query' : { 'PatientName' : '*NE*' }}) | |
1463 self.assertEqual(2, len(a)) | |
1464 | |
1465 a = DoPost(_REMOTE, '/tools/find', { 'Level' : 'Instance', | |
1466 'CaseSensitive' : True, | |
1467 'Query' : { 'PatientName' : '*NE*' }}) | |
1468 self.assertEqual(4, len(a)) | |
1469 | |
1470 a = DoPost(_REMOTE, '/tools/find', { 'Level' : 'Patient', 'Query' : { }}) | |
1471 self.assertEqual(2, len(a)) | |
1472 | |
1473 a = DoPost(_REMOTE, '/tools/find', { 'Level' : 'Study', 'Query' : { }}) | |
1474 self.assertEqual(2, len(a)) | |
1475 | |
1476 a = DoPost(_REMOTE, '/tools/find', { 'Level' : 'Series', 'Query' : { }}) | |
1477 self.assertEqual(4, len(a)) | |
1478 | |
1479 a = DoPost(_REMOTE, '/tools/find', { 'Level' : 'Instance', 'Query' : { }}) | |
1480 self.assertEqual(8, len(a)) | |
1481 | |
1482 | |
1483 def test_rest_query_retrieve(self): | |
1484 self.assertEqual(0, len(DoGet(_REMOTE, '/patients'))) | |
1485 | |
1486 # Upload 8 instances | |
1487 for i in range(2): | |
1488 UploadInstance(_REMOTE, 'Brainix/Flair/IM-0001-000%d.dcm' % (i + 1)) | |
1489 UploadInstance(_REMOTE, 'Brainix/Epi/IM-0001-000%d.dcm' % (i + 1)) | |
1490 UploadInstance(_REMOTE, 'Knee/T1/IM-0001-000%d.dcm' % (i + 1)) | |
1491 UploadInstance(_REMOTE, 'Knee/T2/IM-0001-000%d.dcm' % (i + 1)) | |
1492 | |
1493 self.assertEqual(2, len(DoGet(_REMOTE, '/patients'))) | |
1494 for p in DoGet(_REMOTE, '/patients'): | |
1495 DoPost(_REMOTE, '/modalities/orthanctest/store', p) | |
1496 DoDelete(_REMOTE, '/patients/%s' % p) | |
1497 | |
1498 for q in DoGet(_REMOTE, '/queries'): | |
1499 DoDelete(_REMOTE, '/queries/%s' % q) | |
1500 | |
1501 self.assertEqual(0, len(DoGet(_REMOTE, '/patients'))) | |
1502 self.assertEqual(0, len(DoGet(_REMOTE, '/queries'))) | |
1503 a = DoPost(_REMOTE, '/modalities/orthanctest/query', { 'Level' : 'Series', | |
27 | 1504 'Query' : { |
1505 'PatientName' : '*NE*', | |
1506 'StudyDate' : '*', | |
1507 }})['ID'] | |
14 | 1508 self.assertEqual(1, len(DoGet(_REMOTE, '/queries'))) |
1509 | |
1510 b = DoGet(_REMOTE, '/queries/%s' % a) | |
1511 self.assertTrue('answers' in b) | |
1512 self.assertTrue('level' in b) | |
1513 self.assertTrue('modality' in b) | |
1514 self.assertTrue('query' in b) | |
1515 self.assertTrue('retrieve' in b) | |
1516 self.assertEqual('Series', DoGet(_REMOTE, '/queries/%s/level' % a)) | |
1517 self.assertEqual('orthanctest', DoGet(_REMOTE, '/queries/%s/modality' % a)) | |
1518 | |
1519 q = DoGet(_REMOTE, '/queries/%s/query?simplify' % a) | |
27 | 1520 self.assertEqual(2, len(q)) |
14 | 1521 self.assertTrue('PatientName' in q) |
27 | 1522 self.assertTrue('StudyDate' in q) |
14 | 1523 self.assertEqual('*NE*', q['PatientName']) |
27 | 1524 self.assertEqual('*', q['StudyDate']) |
14 | 1525 |
1526 self.assertEqual(2, len(DoGet(_REMOTE, '/queries/%s/answers' % a))) | |
1527 | |
1528 s = DoGet(_REMOTE, '/queries/%s/answers/0' % a) | |
1529 self.assertTrue('content' in s) | |
1530 self.assertTrue('retrieve' in s) | |
1531 | |
1532 s = DoGet(_REMOTE, '/queries/%s/answers/0/content?simplify' % a) | |
1533 self.assertEqual('887', s['PatientID']) | |
1534 self.assertEqual('2.16.840.1.113669.632.20.121711.10000160881', s['StudyInstanceUID']) | |
1535 | |
1536 self.assertEqual(0, len(DoGet(_REMOTE, '/patients'))) | |
1537 DoPost(_REMOTE, '/queries/%s/answers/0/retrieve' % a, 'ORTHANC') | |
1538 self.assertEqual(1, len(DoGet(_REMOTE, '/patients'))) | |
1539 self.assertEqual(1, len(DoGet(_REMOTE, '/studies'))) | |
1540 self.assertEqual(1, len(DoGet(_REMOTE, '/series'))) | |
1541 self.assertEqual(2, len(DoGet(_REMOTE, '/instances'))) | |
1542 | |
1543 DoPost(_REMOTE, '/queries/%s/answers/1/retrieve' % a, 'ORTHANC') | |
1544 self.assertEqual(1, len(DoGet(_REMOTE, '/patients'))) | |
1545 self.assertEqual(1, len(DoGet(_REMOTE, '/studies'))) | |
1546 self.assertEqual(2, len(DoGet(_REMOTE, '/series'))) | |
1547 self.assertEqual(4, len(DoGet(_REMOTE, '/instances'))) | |
1548 | |
1549 DoDelete(_REMOTE, '/queries/%s' % a) | |
1550 self.assertEqual(0, len(DoGet(_REMOTE, '/queries'))) | |
1551 | |
1552 | |
1553 def test_parent(self): | |
1554 u = UploadInstance(_REMOTE, 'DummyCT.dcm')['ID'] | |
1555 patient = '6816cb19-844d5aee-85245eba-28e841e6-2414fae2' | |
1556 study = 'b9c08539-26f93bde-c81ab0d7-bffaf2cb-a4d0bdd0' | |
1557 series = 'f2635388-f01d497a-15f7c06b-ad7dba06-c4c599fe' | |
1558 instance = '66a662ce-7430e543-bad44d47-0dc5a943-ec7a538d' | |
1559 self.assertEqual(instance, u); | |
1560 | |
1561 a = DoGet(_REMOTE, '/studies/%s/patient' % study) | |
1562 self.assertEqual('Patient', a['Type']) | |
1563 self.assertEqual(patient, a['ID']) | |
1564 | |
1565 a = DoGet(_REMOTE, '/series/%s/patient' % series) | |
1566 self.assertEqual('Patient', a['Type']) | |
1567 self.assertEqual(patient, a['ID']) | |
1568 | |
1569 a = DoGet(_REMOTE, '/series/%s/study' % series) | |
1570 self.assertEqual('Study', a['Type']) | |
1571 self.assertEqual(study, a['ID']) | |
1572 | |
1573 a = DoGet(_REMOTE, '/instances/%s/patient' % instance) | |
1574 self.assertEqual('Patient', a['Type']) | |
1575 self.assertEqual(patient, a['ID']) | |
1576 | |
1577 a = DoGet(_REMOTE, '/instances/%s/study' % instance) | |
1578 self.assertEqual('Study', a['Type']) | |
1579 self.assertEqual(study, a['ID']) | |
1580 | |
1581 a = DoGet(_REMOTE, '/instances/%s/series' % instance) | |
1582 self.assertEqual('Series', a['Type']) | |
1583 self.assertEqual(series, a['ID']) | |
1584 | |
1585 | |
1586 def test_shanon(self): | |
1587 def Anonymize(instance, replacements = {}): | |
1588 return DoPost(_REMOTE, '/instances/%s/anonymize' % instance, { 'Replace' : replacements }, 'application/json') | |
1589 | |
1590 self.assertEqual(0, len(DoGet(_REMOTE, '/instances'))) | |
1591 u = UploadInstance(_REMOTE, 'DummyCT.dcm')['ID'] | |
1592 self.assertEqual(1, len(DoGet(_REMOTE, '/instances'))) | |
1593 | |
1594 tags = [ 'PatientID', 'StudyInstanceUID', 'SeriesInstanceUID', 'SOPInstanceUID', 'DeidentificationMethod' ] | |
1595 ids = [ 'ozp00SjY2xG', | |
1596 '1.2.840.113619.2.176.2025.1499492.7391.1171285944.390', | |
1597 '1.2.840.113619.2.176.2025.1499492.7391.1171285944.394', | |
1598 '1.2.840.113619.2.176.2025.1499492.7040.1171286242.109' ] | |
1599 | |
1600 a = ExtractDicomTags(Anonymize(u), tags) | |
1601 for i in range(4): | |
1602 self.assertNotEqual(ids[i], a[i]) | |
1603 self.assertTrue(a[4].startswith('Orthanc')) | |
1604 | |
1605 a = ExtractDicomTags(Anonymize(u, { 'PatientName' : 'toto' }), tags) | |
1606 for i in range(4): | |
1607 self.assertNotEqual(ids[i], a[i]) | |
1608 self.assertFalse(a[4].startswith('Orthanc')) | |
1609 | |
1610 a = ExtractDicomTags(Anonymize(u, { 'SOPInstanceUID' : 'instance' }), tags) | |
1611 self.assertEqual('instance', a[3]) | |
1612 self.assertFalse(a[4].startswith('Orthanc')) | |
1613 | |
1614 a = ExtractDicomTags(Anonymize(u, { 'SeriesInstanceUID' : 'series' }), tags) | |
1615 self.assertEqual('series', a[2]) | |
1616 self.assertFalse(a[4].startswith('Orthanc')) | |
1617 | |
1618 a = ExtractDicomTags(Anonymize(u, { 'StudyInstanceUID' : 'study' }), tags) | |
1619 self.assertEqual('study', a[1]) | |
1620 self.assertFalse(a[4].startswith('Orthanc')) | |
1621 | |
1622 a = ExtractDicomTags(Anonymize(u, { 'PatientID' : 'patient' }), tags) | |
1623 self.assertEqual('patient', a[0]) | |
1624 self.assertFalse(a[4].startswith('Orthanc')) | |
1625 | |
1626 a = ExtractDicomTags(Anonymize(u, { 'PatientID' : 'patient', | |
1627 'StudyInstanceUID' : 'study', | |
1628 'SeriesInstanceUID' : 'series', | |
1629 'SOPInstanceUID' : 'instance' }), tags) | |
1630 self.assertEqual('patient', a[0]) | |
1631 self.assertFalse(a[4].startswith('Orthanc')) | |
1632 | |
1633 self.assertEqual(1, len(DoGet(_REMOTE, '/instances'))) | |
1634 | |
1635 | |
1636 def test_shanon_2(self): | |
1637 def Modify(instance, replacements = {}): | |
1638 return DoPost(_REMOTE, '/instances/%s/modify' % instance, { 'Replace' : replacements }, 'application/json') | |
1639 | |
1640 self.assertEqual(0, len(DoGet(_REMOTE, '/instances'))) | |
1641 u = UploadInstance(_REMOTE, 'DummyCT.dcm')['ID'] | |
1642 self.assertEqual(1, len(DoGet(_REMOTE, '/instances'))) | |
1643 | |
1644 tags = [ 'PatientID', 'StudyInstanceUID', 'SeriesInstanceUID', 'SOPInstanceUID', 'DeidentificationMethod' ] | |
1645 ids = [ 'ozp00SjY2xG', | |
1646 '1.2.840.113619.2.176.2025.1499492.7391.1171285944.390', | |
1647 '1.2.840.113619.2.176.2025.1499492.7391.1171285944.394', | |
1648 '1.2.840.113619.2.176.2025.1499492.7040.1171286242.109' ] | |
1649 | |
1650 a = ExtractDicomTags(Modify(u), tags) | |
1651 self.assertEqual(ids[0], a[0]) | |
1652 self.assertEqual(ids[1], a[1]) | |
1653 self.assertEqual(ids[2], a[2]) | |
1654 self.assertNotEqual(ids[3], a[3]) | |
1655 self.assertEqual(0, len(a[4])) | |
1656 | |
1657 a = ExtractDicomTags(Modify(u, { 'SOPInstanceUID' : 'instance' }), tags) | |
1658 self.assertEqual(ids[0], a[0]) | |
1659 self.assertEqual(ids[1], a[1]) | |
1660 self.assertEqual(ids[2], a[2]) | |
1661 self.assertEqual('instance', a[3]) | |
1662 | |
1663 a = ExtractDicomTags(Modify(u, { 'SeriesInstanceUID' : 'series' }), tags) | |
1664 self.assertEqual(ids[0], a[0]) | |
1665 self.assertEqual(ids[1], a[1]) | |
1666 self.assertEqual('series', a[2]) | |
1667 self.assertNotEqual(ids[3], a[3]) | |
1668 | |
1669 a = ExtractDicomTags(Modify(u, { 'StudyInstanceUID' : 'study' }), tags) | |
1670 self.assertEqual(ids[0], a[0]) | |
1671 self.assertEqual('study', a[1]) | |
1672 self.assertNotEqual(ids[2], a[2]) | |
1673 self.assertNotEqual(ids[3], a[3]) | |
1674 | |
1675 a = ExtractDicomTags(Modify(u, { 'PatientID' : 'patient' }), tags) | |
1676 self.assertEqual('patient', a[0]) | |
1677 self.assertNotEqual(ids[1], a[1]) | |
1678 self.assertNotEqual(ids[2], a[2]) | |
1679 self.assertNotEqual(ids[3], a[3]) | |
1680 | |
1681 a = ExtractDicomTags(Modify(u, { 'PatientID' : 'patient', | |
1682 'StudyInstanceUID' : 'study', | |
1683 'SeriesInstanceUID' : 'series', | |
1684 'SOPInstanceUID' : 'instance' }), tags) | |
1685 self.assertEqual('patient', a[0]) | |
1686 self.assertEqual('study', a[1]) | |
1687 self.assertEqual('series', a[2]) | |
1688 self.assertEqual('instance', a[3]) | |
1689 | |
1690 self.assertEqual(1, len(DoGet(_REMOTE, '/instances'))) | |
1691 | |
1692 | |
1693 def test_instances_tags(self): | |
1694 a = UploadInstance(_REMOTE, 'Knee/T1/IM-0001-0001.dcm')['ID'] | |
1695 b = UploadInstance(_REMOTE, 'Knee/T2/IM-0001-0001.dcm')['ID'] | |
1696 #a = UploadInstance(_REMOTE, 'Cardiac/MR.X.1.2.276.0.7230010.3.1.4.2831157719.2256.1336386937.676343')['ID'] | |
1697 #b = UploadInstance(_REMOTE, 'Cardiac/MR.X.1.2.276.0.7230010.3.1.4.2831157719.2256.1336386925.676329')['ID'] | |
1698 | |
1699 i = DoGet(_REMOTE, '/patients/%s/instances-tags?simplify' % DoGet(_REMOTE, '/patients')[0]) | |
1700 self.assertEqual(2, len(i)) | |
1701 self.assertEqual('887', i[i.keys()[0]]['PatientID']) | |
1702 self.assertEqual('887', i[i.keys()[1]]['PatientID']) | |
1703 | |
1704 i = DoGet(_REMOTE, '/patients/%s/instances-tags?simplify' % DoGet(_REMOTE, '/studies')[0]) | |
1705 self.assertEqual(2, len(i)) | |
1706 self.assertEqual('887', i[i.keys()[0]]['PatientID']) | |
1707 self.assertEqual('887', i[i.keys()[1]]['PatientID']) | |
1708 | |
1709 self.assertEqual(2, len(DoGet(_REMOTE, '/series'))) | |
1710 i = DoGet(_REMOTE, '/patients/%s/instances-tags?simplify' % DoGet(_REMOTE, '/series')[0]) | |
1711 self.assertEqual(1, len(i)) | |
1712 self.assertEqual('887', i[i.keys()[0]]['PatientID']) | |
1713 | |
1714 i = DoGet(_REMOTE, '/patients/%s/instances-tags?simplify' % DoGet(_REMOTE, '/series')[1]) | |
1715 self.assertEqual(1, len(i)) | |
1716 self.assertEqual('887', i[i.keys()[0]]['PatientID']) | |
1717 | |
1718 | |
1719 def test_lookup(self): | |
1720 a = DoPost(_REMOTE, '/tools/lookup', 'ozp00SjY2xG') | |
1721 self.assertEqual(0, len(a)) | |
1722 | |
1723 UploadInstance(_REMOTE, 'DummyCT.dcm') | |
1724 | |
1725 a = DoPost(_REMOTE, '/tools/lookup', 'ozp00SjY2xG') | |
1726 self.assertEqual(1, len(a)) | |
1727 self.assertEqual('Patient', a[0]['Type']) | |
1728 self.assertEqual('6816cb19-844d5aee-85245eba-28e841e6-2414fae2', a[0]['ID']) | |
1729 self.assertEqual('/patients/%s' % a[0]['ID'], a[0]['Path']) | |
1730 | |
1731 a = DoPost(_REMOTE, '/tools/lookup', '1.2.840.113619.2.176.2025.1499492.7391.1171285944.390') | |
1732 self.assertEqual(1, len(a)) | |
1733 self.assertEqual('Study', a[0]['Type']) | |
1734 self.assertEqual('b9c08539-26f93bde-c81ab0d7-bffaf2cb-a4d0bdd0', a[0]['ID']) | |
1735 self.assertEqual('/studies/%s' % a[0]['ID'], a[0]['Path']) | |
1736 | |
1737 a = DoPost(_REMOTE, '/tools/lookup', '1.2.840.113619.2.176.2025.1499492.7391.1171285944.394') | |
1738 self.assertEqual(1, len(a)) | |
1739 self.assertEqual('Series', a[0]['Type']) | |
1740 self.assertEqual('f2635388-f01d497a-15f7c06b-ad7dba06-c4c599fe', a[0]['ID']) | |
1741 self.assertEqual('/series/%s' % a[0]['ID'], a[0]['Path']) | |
1742 | |
1743 a = DoPost(_REMOTE, '/tools/lookup', '1.2.840.113619.2.176.2025.1499492.7040.1171286242.109') | |
1744 self.assertEqual(1, len(a)) | |
1745 self.assertEqual('Instance', a[0]['Type']) | |
1746 self.assertEqual('66a662ce-7430e543-bad44d47-0dc5a943-ec7a538d', a[0]['ID']) | |
1747 self.assertEqual('/instances/%s' % a[0]['ID'], a[0]['Path']) | |
1748 | |
1749 DropOrthanc(_REMOTE) | |
1750 a = DoPost(_REMOTE, '/tools/lookup', '3113719P') | |
1751 self.assertEqual(0, len(a)) | |
1752 | |
15 | 1753 |
1754 def test_autorouting(self): | |
1755 knee1 = 'Knee/T1/IM-0001-0001.dcm' | |
1756 knee2 = 'Knee/T2/IM-0001-0002.dcm' | |
1757 other = 'Brainix/Flair/IM-0001-0001.dcm' | |
1758 | |
1759 # Check that this version is >= 0.8.0 | |
1760 self.assertTrue(IsDefinedInLua(_REMOTE, '_InitializeJob')) | |
1761 self.assertTrue('orthanctest' in DoGet(_REMOTE, '/modalities')) | |
1762 | |
1763 UploadInstance(_REMOTE, knee1) | |
1764 self.assertEqual(0, len(DoGet(_LOCAL, '/instances'))) | |
1765 | |
1766 DropOrthanc(_REMOTE) | |
1767 DropOrthanc(_LOCAL) | |
1768 InstallLuaScript('Lua/Autorouting.lua') | |
1769 UploadInstance(_REMOTE, knee1) | |
1770 UploadInstance(_REMOTE, knee2) | |
1771 UploadInstance(_REMOTE, other) | |
1772 WaitEmpty(_REMOTE) | |
1773 UninstallLuaCallbacks() | |
1774 self.assertEqual(3, len(DoGet(_LOCAL, '/instances'))) | |
1775 | |
1776 DropOrthanc(_REMOTE) | |
1777 DropOrthanc(_LOCAL) | |
1778 InstallLuaScript('Lua/AutoroutingConditional.lua') | |
1779 UploadInstance(_REMOTE, knee1) | |
1780 UploadInstance(_REMOTE, knee2) | |
1781 UploadInstance(_REMOTE, other) | |
1782 WaitEmpty(_REMOTE) | |
1783 UninstallLuaCallbacks() | |
1784 self.assertEqual(2, len(DoGet(_LOCAL, '/instances'))) | |
1785 | |
1786 DropOrthanc(_REMOTE) | |
1787 DropOrthanc(_LOCAL) | |
1788 InstallLuaScript('Lua/AutoroutingModification.lua') | |
1789 UploadInstance(_REMOTE, knee1) | |
1790 WaitEmpty(_REMOTE) | |
1791 UninstallLuaCallbacks() | |
1792 i = DoGet(_LOCAL, '/instances') | |
1793 self.assertEqual(1, len(i)) | |
1794 | |
1795 with tempfile.NamedTemporaryFile(delete = True) as f: | |
1796 f.write(DoGet(_LOCAL, '/instances/%s/file' % i[0])) | |
1797 f.flush() | |
45 | 1798 routed = subprocess.check_output([ FindExecutable('dcm2xml'), f.name ]) |
15 | 1799 self.assertEqual('My Medical Device', re.search('"StationName">(.*?)<', routed).group(1).strip()) |
1800 self.assertEqual(None, re.search('"MilitaryRank"', routed)) | |
1801 self.assertEqual(None, re.search('"0051,0010"', routed)) # A private tag | |
17 | 1802 |
1803 | |
1804 def test_storescu_rf(self): | |
1805 i = UploadInstance(_REMOTE, 'KarstenHilbertRF.dcm')['ID'] | |
1806 self.assertEqual(0, len(DoGet(_LOCAL, '/instances'))) | |
1807 j = DoPost(_REMOTE, '/modalities/orthanctest/store', str(i), 'text/plain') | |
1808 self.assertEqual(1, len(DoGet(_LOCAL, '/instances'))) | |
18 | 1809 |
1810 | |
1811 def test_anonymize_instance(self): | |
1812 def AnonymizeAndUpload(instanceId, parameters): | |
1813 return DoPost(_REMOTE, '/instances', DoPost(_REMOTE, '/instances/%s/anonymize' % instanceId, parameters, | |
1814 'application/json'), 'application/dicom')['ID'] | |
1815 | |
1816 def ModifyAndUpload(instanceId, parameters): | |
1817 return DoPost(_REMOTE, '/instances', DoPost(_REMOTE, '/instances/%s/modify' % instanceId, parameters, | |
1818 'application/json'), 'application/dicom')['ID'] | |
1819 | |
1820 a = UploadInstance(_REMOTE, 'PrivateMDNTags.dcm')['ID'] | |
1821 s1 = DoGet(_REMOTE, '/instances/%s/content/PatientName' % a) | |
1822 s2 = DoGet(_REMOTE, '/instances/%s/content/00e1-10c2' % a) # Some private tag | |
1823 s3 = DoGet(_REMOTE, '/instances/%s/content/StudyDescription' % a) | |
1824 s4 = DoGet(_REMOTE, '/instances/%s/content/SeriesDescription' % a) | |
1825 s5 = DoGet(_REMOTE, '/instances/%s/content/InstitutionName' % a) | |
1826 | |
1827 b = AnonymizeAndUpload(a, '{}') | |
1828 self.assertNotEqual(s1, DoGet(_REMOTE, '/instances/%s/content/PatientName' % b)) | |
1829 self.assertRaises(Exception, lambda: DoGet(_REMOTE, '/instances/%s/content/00e1-10c2' % b)) | |
1830 | |
1831 # Keep private tag (only OK since Orthanc 0.8.0) | |
1832 b = AnonymizeAndUpload(a, '{"Keep":["00e1-10c2"]}') | |
1833 self.assertNotEqual(s1, DoGet(_REMOTE, '/instances/%s/content/PatientName' % b)) | |
1834 self.assertEqual(s2, DoGet(_REMOTE, '/instances/%s/content/00e1-10c2' % b)) | |
1835 | |
1836 b = AnonymizeAndUpload(a, '{"Keep":["00e1,10c2","PatientName"]}') | |
1837 self.assertEqual(s1, DoGet(_REMOTE, '/instances/%s/content/PatientName' % b)) | |
1838 self.assertEqual(s2, DoGet(_REMOTE, '/instances/%s/content/00e1-10c2' % b)) | |
1839 | |
1840 b = AnonymizeAndUpload(a, '{"Keep":["PatientName"],"Replace":{"00e1,10c2":"Hello"}}') | |
1841 self.assertEqual(s1, DoGet(_REMOTE, '/instances/%s/content/PatientName' % b)) | |
1842 self.assertTrue(DoGet(_REMOTE, '/instances/%s/content/00e1-10c2' % b).startswith('Hello')) | |
1843 | |
1844 # Examples from the Wiki | |
1845 b = AnonymizeAndUpload(a, '{"Replace":{"PatientName":"hello","0010-0020":"world"},"Keep":["StudyDescription", "SeriesDescription"],"KeepPrivateTags": null}') | |
1846 self.assertEqual('hello', DoGet(_REMOTE, '/instances/%s/content/0010-0010' % b).strip()) | |
1847 self.assertEqual('world', DoGet(_REMOTE, '/instances/%s/content/PatientID' % b).strip()) | |
1848 self.assertEqual(s3, DoGet(_REMOTE, '/instances/%s/content/0008,1030' % b)) | |
1849 self.assertEqual(s4, DoGet(_REMOTE, '/instances/%s/content/0008,103e' % b)) | |
1850 self.assertEqual(s4, DoGet(_REMOTE, '/instances/%s/content/0008-103E' % b)) | |
1851 self.assertEqual(s2, DoGet(_REMOTE, '/instances/%s/content/00e1-10c2' % b)) | |
1852 DoGet(_REMOTE, '/instances/%s/content/InstitutionName' % a) | |
1853 self.assertRaises(Exception, lambda: DoGet(_REMOTE, '/instances/%s/content/InstitutionName' % b)) | |
1854 | |
1855 b = ModifyAndUpload(a, '{"Replace":{"PatientName":"hello","PatientID":"world"},"Remove":["InstitutionName"],"RemovePrivateTags": null}') | |
1856 self.assertEqual('hello', DoGet(_REMOTE, '/instances/%s/content/0010-0010' % b).strip()) | |
1857 self.assertEqual('world', DoGet(_REMOTE, '/instances/%s/content/PatientID' % b).strip()) | |
1858 self.assertEqual(s3, DoGet(_REMOTE, '/instances/%s/content/0008,1030' % b)) | |
1859 self.assertEqual(s4, DoGet(_REMOTE, '/instances/%s/content/0008,103e' % b)) | |
1860 self.assertRaises(Exception, lambda: DoGet(_REMOTE, '/instances/%s/content/00e1-10c2' % b)) | |
1861 self.assertRaises(Exception, lambda: DoGet(_REMOTE, '/instances/%s/content/InstitutionName' % b)) | |
1862 | |
1863 b = ModifyAndUpload(a, '{"Replace":{"PatientName":"hello","PatientID":"world"}}') | |
1864 self.assertEqual('hello', DoGet(_REMOTE, '/instances/%s/content/0010-0010' % b).strip()) | |
1865 self.assertEqual('world', DoGet(_REMOTE, '/instances/%s/content/PatientID' % b).strip()) | |
1866 self.assertEqual(s2, DoGet(_REMOTE, '/instances/%s/content/00e1,10c2' % b)) | |
1867 self.assertEqual(s3, DoGet(_REMOTE, '/instances/%s/content/0008,1030' % b)) | |
1868 self.assertEqual(s4, DoGet(_REMOTE, '/instances/%s/content/0008-103E' % b)) | |
1869 self.assertEqual(s5, DoGet(_REMOTE, '/instances/%s/content/InstitutionName' % b)) | |
1870 | |
1871 | |
1872 # Test modify non-existing | |
1873 i = DoPost(_REMOTE, '/tools/create-dicom', | |
1874 json.dumps({ | |
1875 'PatientName' : 'Jodogne', | |
1876 'Modality' : 'CT', | |
1877 }))['ID'] | |
1878 | |
1879 self.assertEqual('Jodogne', DoGet(_REMOTE, '/instances/%s/content/PatientName' % i).strip()) | |
1880 self.assertRaises(Exception, lambda: DoGet(_REMOTE, '/instances/%s/content/StudyDescription' % i)) | |
1881 self.assertEqual('CT', DoGet(_REMOTE, '/instances/%s/content/Modality' % i).strip()) | |
1882 | |
1883 b = ModifyAndUpload(i, '{"Replace":{"StudyDescription":"hello","Modality":"world"}}') | |
1884 self.assertEqual('Jodogne', DoGet(_REMOTE, '/instances/%s/content/PatientName' % b).strip()) | |
1885 self.assertEqual('hello', DoGet(_REMOTE, '/instances/%s/content/StudyDescription' % b).strip()) | |
1886 self.assertEqual('world', DoGet(_REMOTE, '/instances/%s/content/Modality' % b).strip()) | |
1887 | |
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1888 |
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1889 def test_incoming_jpeg(self): |
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1890 def storescu(image, acceptUnknownSopClassUid): |
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1891 if acceptUnknownSopClassUid: |
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1892 tmp = [ '-xf', GetDatabasePath('UnknownSopClassUid.cfg'), 'Default' ] |
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1893 else: |
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1894 tmp = [ '-xs' ] |
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1895 |
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1896 with open(os.devnull, 'w') as FNULL: |
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1897 subprocess.check_call([ FindExecutable('storescu') ] + tmp + |
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1898 [ _REMOTE['Server'], str(_REMOTE['DicomPort']), |
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1899 GetDatabasePath(image) ], |
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1900 stderr = FNULL) |
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1901 |
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1902 self.assertEqual(0, len(DoGet(_REMOTE, '/patients'))) |
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1903 InstallLuaScript('Lua/TransferSyntaxDisable.lua') |
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1904 self.assertRaises(Exception, lambda: storescu('Knix/Loc/IM-0001-0001.dcm', False)) |
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1905 self.assertRaises(Exception, lambda: storescu('UnknownSopClassUid.dcm', True)) |
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1906 self.assertEqual(0, len(DoGet(_REMOTE, '/patients'))) |
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1907 InstallLuaScript('Lua/TransferSyntaxEnable.lua') |
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1908 DoPost(_REMOTE, '/tools/execute-script', "print('All special transfer syntaxes are now accepted')") |
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1909 storescu('Knix/Loc/IM-0001-0001.dcm', False) |
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1910 storescu('UnknownSopClassUid.dcm', True) |
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1911 self.assertEqual(2, len(DoGet(_REMOTE, '/patients'))) |
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1912 |
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1913 |
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1914 def test_storescu_jpeg(self): |
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1915 self.assertEqual(0, len(DoGet(_REMOTE, '/exports')['Exports'])) |
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1916 |
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1917 knixStudy = 'b9c08539-26f93bde-c81ab0d7-bffaf2cb-a4d0bdd0' |
64 | 1918 i = UploadInstance(_REMOTE, 'Knix/Loc/IM-0001-0001.dcm')['ID'] |
1919 | |
1920 # This is JPEG lossless | |
1921 self.assertEqual('1.2.840.10008.1.2.4.70', DoGet(_REMOTE, '/instances/%s/header?simplify' % i)['TransferSyntaxUID']) | |
1922 | |
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1923 UploadInstance(_REMOTE, 'Knix/Loc/IM-0001-0002.dcm') |
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1924 UploadInstance(_REMOTE, 'Knix/Loc/IM-0001-0003.dcm') |
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1925 |
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1926 a = UploadInstance(_REMOTE, 'Brainix/Flair/IM-0001-0001.dcm')['ID'] |
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1927 b = UploadInstance(_REMOTE, 'ColorTestImageJ.dcm')['ID'] |
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1928 self.assertEqual(0, len(DoGet(_LOCAL, '/instances'))) |
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1929 DoPost(_REMOTE, '/modalities/orthanctest/store', [ knixStudy, a, b ]) |
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1930 self.assertEqual(5, len(DoGet(_LOCAL, '/instances'))) |
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1931 |
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1932 self.assertEqual(3, len(DoGet(_REMOTE, '/exports')['Exports'])) |
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1933 |
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1934 DropOrthanc(_REMOTE) |
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1935 self.assertEqual(0, len(DoGet(_REMOTE, '/exports')['Exports'])) |
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1936 |
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1937 |
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1938 def test_pixel_data(self): |
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1939 jpeg = UploadInstance(_REMOTE, 'Knix/Loc/IM-0001-0001.dcm')['ID'] |
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1940 color = UploadInstance(_REMOTE, 'ColorTestImageJ.dcm')['ID'] |
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1941 phenix = UploadInstance(_REMOTE, 'Phenix/IM-0001-0001.dcm')['ID'] |
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1942 |
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1943 phenixSize = 358 * 512 * 2 |
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1944 colorSize = 1000 * 1000 * 3 |
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1945 jpegSize = 51918 |
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1946 |
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1947 self.assertEqual(1, len(DoGet(_REMOTE, '/instances/%s/content/7fe0-0010' % phenix))) |
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1948 self.assertEqual(1, len(DoGet(_REMOTE, '/instances/%s/content/7fe0-0010' % color))) |
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1949 self.assertEqual(2, len(DoGet(_REMOTE, '/instances/%s/content/7fe0-0010' % jpeg))) |
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1950 |
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1951 self.assertEqual(0, len(DoGet(_REMOTE, '/instances/%s/content/7fe0-0010/0' % jpeg))) |
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1952 self.assertEqual(jpegSize, len(DoGet(_REMOTE, '/instances/%s/content/7fe0-0010/1' % jpeg))) |
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1953 |
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1954 self.assertEqual(phenixSize, len(DoGet(_REMOTE, '/instances/%s/content/7fe0-0010/0' % phenix))) |
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1955 self.assertEqual(colorSize, len(DoGet(_REMOTE, '/instances/%s/content/7fe0-0010/0' % color))) |
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1956 |
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1957 |
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1958 def test_decode_brainix(self): |
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1959 brainix = [ |
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1960 UploadInstance(_REMOTE, 'Brainix/Epi/IM-0001-0001.dcm')['ID'], # (*) |
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1961 UploadInstance(_REMOTE, 'Formats/JpegLossless.dcm')['ID'], # JPEG-LS, same as (*) (since Orthanc 0.7.6) |
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1962 UploadInstance(_REMOTE, 'Formats/Jpeg.dcm')['ID'], # JPEG, same as (*) (since Orthanc 0.7.6) |
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1963 ] |
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1964 h = '6fb11b932d535c2be04beabd99793ff8' |
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1965 maxValue = 426.0 |
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1966 |
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1967 truth = Image.open(GetDatabasePath('Formats/Brainix.png')) |
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1968 for i in brainix: |
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1969 self.AssertSameImages(truth.getdata(), '/instances/%s/image-int16' % i) |
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1970 self.AssertSameImages(truth.getdata(), '/instances/%s/image-uint16' % i) |
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1971 |
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1972 truth2 = map(lambda x: min(255, x), truth.getdata()) |
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1973 for i in brainix: |
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1974 self.AssertSameImages(truth2, '/instances/%s/image-uint8' % i) |
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1975 |
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1976 truth2 = map(lambda x: x * 255.0 / maxValue, truth.getdata()) |
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1977 for i in brainix: |
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1978 self.AssertSameImages(truth2, '/instances/%s/preview' % i) |
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1979 |
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1980 for i in brainix: |
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1981 self.assertEqual(h, ComputeMD5(DoGet(_REMOTE, '/instances/%s/matlab' % i))) |
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1982 |
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1983 |
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1984 def test_decode_color(self): |
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1985 imagej = UploadInstance(_REMOTE, 'ColorTestImageJ.dcm')['ID'] |
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1986 color = UploadInstance(_REMOTE, 'ColorTestMalaterre.dcm')['ID'] |
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1987 |
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1988 for i in [ imagej, color ]: |
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1989 for j in [ 'image-uint8', 'image-uint16', 'image-int16' ]: |
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1990 self.assertRaises(Exception, lambda: DoGet(_REMOTE, '/instances/%s/%s' % (i, j))) |
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1991 |
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1992 self.assertEqual('c14c687f7a1ea9fe022479fc87c67274', ComputeMD5(DoGet(_REMOTE, '/instances/%s/preview' % imagej))) |
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1993 self.assertEqual('a87d122918a56f803bcfe9d2586b9125', ComputeMD5(DoGet(_REMOTE, '/instances/%s/preview' % color))) |
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1994 |
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1995 self.assertEqual('30cc46bfa7aba77a40e4178f6184c25a', ComputeMD5(DoGet(_REMOTE, '/instances/%s/matlab' % imagej))) |
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1996 self.assertEqual('ff195005cef06b59666fd220a9b4cd9a', ComputeMD5(DoGet(_REMOTE, '/instances/%s/matlab' % color))) |
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1997 |
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1998 |
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1999 def test_decode_rf(self): |
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2000 rf = UploadInstance(_REMOTE, 'KarstenHilbertRF.dcm')['ID'] |
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2001 truth = Image.open(GetDatabasePath('Formats/KarstenHilbertRF.png')) |
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2002 |
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2003 self.AssertSameImages(truth.getdata(), '/instances/%s/image-uint8' % rf) |
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2004 self.AssertSameImages(truth.getdata(), '/instances/%s/image-uint16' % rf) |
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2005 self.AssertSameImages(truth.getdata(), '/instances/%s/image-int16' % rf) |
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2006 self.AssertSameImages(truth.getdata(), '/instances/%s/preview' % rf) |
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2007 |
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2008 self.assertEqual('42254d70efd2f4a1b8f3455909689f0e', ComputeMD5(DoGet(_REMOTE, '/instances/%s/matlab' % rf))) |
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2009 |
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2010 |
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2011 def test_decode_multiframe(self): |
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2012 mf = UploadInstance(_REMOTE, 'Multiframe.dcm')['ID'] |
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2013 |
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2014 # Test the first frame |
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2015 truth = Image.open(GetDatabasePath('Formats/Multiframe0.png')) |
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2016 self.AssertSameImages(truth.getdata(), '/instances/%s/image-uint8' % mf) |
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2017 self.AssertSameImages(truth.getdata(), '/instances/%s/image-uint16' % mf) |
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2018 self.AssertSameImages(truth.getdata(), '/instances/%s/image-int16' % mf) |
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2019 self.AssertSameImages(truth.getdata(), '/instances/%s/preview' % mf) |
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2020 self.assertEqual('9812b99d93bbcd4e7684ded089b5dfb3', ComputeMD5(DoGet(_REMOTE, '/instances/%s/matlab' % mf))) |
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2021 |
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2022 self.AssertSameImages(truth.getdata(), '/instances/%s/frames/0/image-uint16' % mf) |
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2023 |
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2024 # Test the last frame |
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2025 truth = Image.open(GetDatabasePath('Formats/Multiframe75.png')) |
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2026 self.AssertSameImages(truth.getdata(), '/instances/%s/frames/75/image-uint16' % mf) |
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2027 |
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2028 |
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2029 def test_decode_signed(self): |
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2030 signed = UploadInstance(_REMOTE, 'SignedCT.dcm')['ID'] |
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2031 minValue = -2000 |
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2032 maxValue = 4042 |
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2033 |
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2034 truth = Image.open(GetDatabasePath('Formats/SignedCT.png')) |
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2035 self.AssertSameImages(truth.getdata(), '/instances/%s/image-int16' % signed) |
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2036 |
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2037 truth2 = map(lambda x: 0 if x >= 32768 else x, truth.getdata()) |
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2038 self.AssertSameImages(truth2, '/instances/%s/image-uint16' % signed) |
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2039 |
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2040 truth3 = map(lambda x: 255 if x >= 256 else x, truth2) |
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2041 self.AssertSameImages(truth3, '/instances/%s/image-uint8' % signed) |
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2042 |
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2043 tmp = map(lambda x: x - 65536 if x >= 32768 else x, truth.getdata()) |
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2044 tmp = map(lambda x: (255.0 * (x - minValue)) / (maxValue - minValue), tmp) |
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2045 self.AssertSameImages(tmp, '/instances/%s/preview' % signed) |
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2046 |
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2047 self.assertEqual('b57e6c872a3da50877c7da689b03a444', ComputeMD5(DoGet(_REMOTE, '/instances/%s/matlab' % signed))) |
22 | 2048 |
2049 | |
46
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2050 def test_googlecode_issue_32(self): |
22 | 2051 f = UploadInstance(_REMOTE, 'Issue32.dcm')['ID'] |
2052 tags = DoGet(_REMOTE, '/instances/%s/tags?simplify' % f) | |
2053 self.assertEqual(u'Рентгенография', tags['SeriesDescription']) | |
2054 self.assertEqual(u'Таз', tags['BodyPartExamined']) | |
2055 self.assertEqual(u'Прямая', tags['ViewPosition']) | |
2056 | |
2057 | |
2058 def test_encodings(self): | |
23 | 2059 # Latin-1 (ISO_IR 100) |
22 | 2060 brainix = UploadInstance(_REMOTE, 'Brainix/Epi/IM-0001-0001.dcm')['ID'] |
2061 tags = DoGet(_REMOTE, '/instances/%s/tags?simplify' % brainix) | |
2062 self.assertEqual(u'IRM cérébrale, neuro-crâne', tags['StudyDescription']) | |
23 | 2063 |
2064 # Latin-2 (ISO_IR 101) | |
2065 a = UploadInstance(_REMOTE, 'MarekLatin2.dcm')['ID'] | |
2066 i = DoGet(_REMOTE, '/instances/%s/simplified-tags' % a) | |
2067 # dcm2xml MarekLatin2.dcm | iconv -f latin2 -t utf-8 | xmllint --format - | |
2068 self.assertEqual('Imię i Nazwisko osoby opisującej', | |
2069 i['ContentSequence'][4]['ConceptNameCodeSequence'][0]['CodeMeaning'].encode('utf-8')) | |
2070 | |
26
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2071 |
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2072 def test_storescu_custom_aet(self): |
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2073 # This tests a feature introduced in Orthanc 0.9.1: "Custom |
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2074 # setting of the local AET during C-Store SCU (both in Lua and |
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|
2075 # in the REST API)." |
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2076 # https://groups.google.com/forum/#!msg/orthanc-users/o5qMULformU/wZjW2iSaMcAJ |
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2077 |
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2078 self.assertEqual(0, len(DoGet(_LOCAL, '/patients'))) |
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2079 |
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test_storescu_custom_aet
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2080 a = UploadInstance(_REMOTE, 'Knee/T1/IM-0001-0001.dcm') |
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2081 b = UploadInstance(_REMOTE, 'Knee/T1/IM-0001-0002.dcm') |
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2082 c = UploadInstance(_REMOTE, 'Knee/T1/IM-0001-0003.dcm') |
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2083 |
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2084 j = DoPost(_REMOTE, '/modalities/orthanctest/store', { |
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2085 'LocalAet' : 'YOP', |
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2086 'Resources' : [ a['ID'], b['ID'] ] |
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2087 }) |
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2088 |
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2089 self.assertEqual(2, len(DoGet(_LOCAL, '/instances'))) |
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2090 self.assertEqual('YOP', DoGet(_LOCAL, '/instances/%s/metadata/RemoteAET' % a['ID'])) |
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2091 |
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2092 DropOrthanc(_LOCAL) |
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2093 self.assertEqual(0, len(DoGet(_LOCAL, '/instances'))) |
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2094 |
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2095 j = DoPost(_REMOTE, '/modalities/orthanctest/store', { |
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2096 'Resources' : [ c['ID'] ] |
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2097 }) |
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2098 |
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2099 self.assertEqual(1, len(DoGet(_LOCAL, '/instances'))) |
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2100 self.assertEqual('ORTHANC', DoGet(_LOCAL, '/instances/%s/metadata/RemoteAET' % c['ID'])) |
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2101 |
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2102 DropOrthanc(_REMOTE) |
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2103 DropOrthanc(_LOCAL) |
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2104 |
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2105 InstallLuaScript('Lua/AutoroutingChangeAet.lua') |
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2106 DoPost(_REMOTE, '/tools/execute-script', 'aet = "HELLO"', 'application/lua') |
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2107 |
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2108 self.assertEqual(0, len(DoGet(_LOCAL, '/instances'))) |
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2109 UploadInstance(_REMOTE, 'Knee/T1/IM-0001-0001.dcm') |
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2110 WaitEmpty(_REMOTE) |
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2111 self.assertEqual(1, len(DoGet(_LOCAL, '/instances'))) |
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2112 self.assertEqual('HELLO', DoGet(_LOCAL, '/instances/%s/metadata/RemoteAET' % a['ID'])) |
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2113 |
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2114 DoPost(_REMOTE, '/tools/execute-script', 'aet = nill', 'application/lua') |
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2115 UploadInstance(_REMOTE, 'Knee/T1/IM-0001-0002.dcm') |
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2116 WaitEmpty(_REMOTE) |
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2117 self.assertEqual(2, len(DoGet(_LOCAL, '/instances'))) |
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2118 self.assertEqual('ORTHANC', DoGet(_LOCAL, '/instances/%s/metadata/RemoteAET' % b['ID'])) |
34
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2119 |
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2120 def test_resources_since_limit(self): |
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2121 # Upload 16 instances |
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2122 for i in range(4): |
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2123 UploadInstance(_REMOTE, 'Brainix/Flair/IM-0001-000%d.dcm' % (i + 1)) |
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2124 UploadInstance(_REMOTE, 'Brainix/Epi/IM-0001-000%d.dcm' % (i + 1)) |
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2125 UploadInstance(_REMOTE, 'Knee/T1/IM-0001-000%d.dcm' % (i + 1)) |
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2126 UploadInstance(_REMOTE, 'Knee/T2/IM-0001-000%d.dcm' % (i + 1)) |
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2127 |
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2128 self.assertEqual(2, len(DoGet(_REMOTE, '/patients'))) |
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2129 self.assertEqual(2, len(DoGet(_REMOTE, '/studies'))) |
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2130 self.assertEqual(4, len(DoGet(_REMOTE, '/series'))) |
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2131 self.assertEqual(16, len(DoGet(_REMOTE, '/instances'))) |
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2132 |
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2133 self.assertRaises(Exception, lambda: DoGet(_REMOTE, '/patients&since=10' % i)) |
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2134 self.assertRaises(Exception, lambda: DoGet(_REMOTE, '/patients&limit=10' % i)) |
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2135 |
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2136 self.assertEqual(0, len(DoGet(_REMOTE, '/patients?since=0&limit=0'))) |
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2137 self.assertEqual(2, len(DoGet(_REMOTE, '/patients?since=0&limit=100'))) |
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2138 self.assertEqual(2, len(DoGet(_REMOTE, '/studies?since=0&limit=100'))) |
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2139 self.assertEqual(4, len(DoGet(_REMOTE, '/series?since=0&limit=100'))) |
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2140 self.assertEqual(16, len(DoGet(_REMOTE, '/instances?since=0&limit=100'))) |
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2141 self.assertEqual(1, len(DoGet(_REMOTE, '/patients?since=1&limit=100'))) |
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2142 self.assertEqual(0, len(DoGet(_REMOTE, '/patients?since=2&limit=100'))) |
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2143 self.assertEqual(0, len(DoGet(_REMOTE, '/patients?since=3&limit=100'))) |
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2144 self.assertEqual(1, len(DoGet(_REMOTE, '/studies?since=1&limit=100'))) |
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2145 self.assertEqual(3, len(DoGet(_REMOTE, '/series?since=1&limit=100'))) |
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2146 self.assertEqual(2, len(DoGet(_REMOTE, '/series?since=2&limit=100'))) |
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2147 self.assertEqual(1, len(DoGet(_REMOTE, '/series?since=3&limit=100'))) |
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2148 self.assertEqual(0, len(DoGet(_REMOTE, '/series?since=4&limit=100'))) |
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2149 self.assertEqual(0, len(DoGet(_REMOTE, '/series?since=100&limit=100'))) |
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2150 self.assertEqual(15, len(DoGet(_REMOTE, '/instances?since=1&limit=100'))) |
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2151 |
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|
2152 for limit in [ 1, 2, 3, 7, 16, 17 ]: |
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2153 s = {} |
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|
2154 since = 0 |
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|
2155 while True: |
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|
2156 t = DoGet(_REMOTE, '/instances?since=%d&limit=%d' % (since, limit)) |
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|
2157 if len(t) == 0: |
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|
2158 break |
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|
2159 |
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2160 since += len(t) |
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|
2161 for i in t: |
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|
2162 s[i] = None |
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2163 |
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2164 self.assertEqual(16, len(s)) |
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2165 for instance in DoGet(_REMOTE, '/instances'): |
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2166 self.assertTrue(instance in s) |
36 | 2167 |
2168 | |
2169 def test_create_pdf(self): | |
2170 # Upload 4 instances | |
2171 brainixInstance = UploadInstance(_REMOTE, 'Brainix/Flair/IM-0001-0001.dcm')['ID'] | |
2172 UploadInstance(_REMOTE, 'Brainix/Epi/IM-0001-0001.dcm') | |
2173 UploadInstance(_REMOTE, 'Knee/T1/IM-0001-0001.dcm') | |
2174 UploadInstance(_REMOTE, 'Knee/T2/IM-0001-0001.dcm') | |
2175 | |
2176 brainixPatient = '16738bc3-e47ed42a-43ce044c-a3414a45-cb069bd0' | |
2177 brainixStudy = '27f7126f-4f66fb14-03f4081b-f9341db2-53925988' | |
2178 brainixEpi = '2ac1316d-3e432022-62eabff2-c59f5475-9b1ac3f8' | |
2179 | |
2180 with open(GetDatabasePath('HelloWorld.pdf'), 'rb') as f: | |
2181 pdf = f.read() | |
2182 | |
2183 i = DoPost(_REMOTE, '/tools/create-dicom', | |
2184 json.dumps({ | |
2185 'Tags' : { | |
2186 'PatientName' : 'Jodogne', | |
2187 'Modality' : 'CT', | |
2188 }, | |
2189 'Content' : 'data:application/pdf;base64,' + base64.b64encode(pdf) | |
2190 })) | |
2191 | |
2192 self.assertEqual('Jodogne', DoGet(_REMOTE, '/instances/%s/content/PatientName' % i['ID']).strip()) | |
2193 self.assertEqual('OT', DoGet(_REMOTE, '/instances/%s/content/Modality' % i['ID']).strip()) | |
2194 | |
2195 b = DoGet(_REMOTE, '/instances/%s/content/0042-0011' % i['ID']) | |
2196 self.assertEqual(len(b), len(pdf) + 1) | |
2197 self.assertEqual(ComputeMD5(b), ComputeMD5(pdf + '\0')) | |
2198 | |
2199 self.assertRaises(Exception, lambda: DoPost(_REMOTE, '/tools/create-dicom', | |
2200 json.dumps({ | |
2201 'Parent' : brainixPatient, | |
2202 'Tags' : { | |
2203 'PatientName' : 'Jodogne', | |
2204 } | |
2205 }))) | |
2206 | |
2207 i = DoPost(_REMOTE, '/tools/create-dicom', | |
2208 json.dumps({ | |
2209 'Parent' : brainixPatient, | |
2210 'Tags' : { 'StudyDescription' : 'PDF^Patient' }, | |
2211 'Content' : 'data:application/pdf;base64,' + base64.b64encode(pdf) | |
2212 })) | |
2213 | |
2214 self.assertEqual(brainixPatient, DoGet(_REMOTE, '/instances/%s/patient' % i['ID'])['ID']) | |
2215 | |
2216 i = DoPost(_REMOTE, '/tools/create-dicom', | |
2217 json.dumps({ | |
2218 'Parent' : brainixStudy, | |
2219 'Tags' : { 'SeriesDescription' : 'PDF^Study' }, | |
2220 'Content' : 'data:application/pdf;base64,' + base64.b64encode(pdf) | |
2221 })) | |
2222 | |
2223 self.assertEqual(brainixStudy, DoGet(_REMOTE, '/instances/%s/study' % i['ID'])['ID']) | |
2224 | |
2225 i = DoPost(_REMOTE, '/tools/create-dicom', | |
2226 json.dumps({ | |
2227 'Parent' : brainixEpi, | |
37 | 2228 'Tags' : { 'SpecificCharacterSet' : 'ISO_IR 13' }, |
36 | 2229 'Content' : 'data:application/pdf;base64,' + base64.b64encode(pdf) |
2230 })) | |
2231 | |
2232 self.assertEqual(brainixEpi, DoGet(_REMOTE, '/instances/%s/series' % i['ID'])['ID']) | |
2233 | |
2234 b = DoGet(_REMOTE, '/instances/%s/pdf' % i['ID']) | |
2235 self.assertEqual(len(b), len(pdf)) | |
2236 self.assertEqual(ComputeMD5(b), ComputeMD5(pdf)) | |
2237 | |
2238 self.assertRaises(Exception, lambda: DoGet(_REMOTE, '/instances/%s/pdf' % brainixInstance)) | |
38 | 2239 |
2240 | |
2241 def test_create_series(self): | |
2242 i = DoPost(_REMOTE, '/tools/create-dicom', | |
2243 json.dumps({ | |
2244 'Tags' : { | |
40 | 2245 'SpecificCharacterSet' : 'ISO_IR 100', |
2246 'PatientName' : 'Sébastien Jodogne', | |
38 | 2247 'Modality' : 'CT', |
2248 }, | |
2249 'Content' : [ | |
40 | 2250 { |
2251 'Content': 'data:image/png;base64,iVBORw0KGgoAAAANSUhEUgAAAAUAAAAFCAYAAACNbyblAAAAHElEQVQI12P4//8/w38GIAXDIBKE0DHxgljNBAAO9TXL0Y4OHwAAAABJRU5ErkJggg==', # red dot in RGBA | |
2252 'Tags' : { 'ImageComments' : 'Tutu' } | |
2253 }, | |
38 | 2254 'data:image/png;base64,iVBORw0KGgoAAAANSUhEUgAAABAAAAAQCAYAAAAf8/9hAAAAoUlEQVQ4jZ2SWw3EIBREjwUsYAELa2EtoAULFUCyXAtroRZqoRbox254BdLC/DZnZjoXWJFgCDg8egW2CBEhEnDzyRk+Ecxz2KP/0AL8S99T+jQccAVs22qKwAuPuq0uyNg9cPLh3am+pe/dkHLZtqJHj6vXJrZ7nvzvxxgemXgUwnGfXqpee09mUwp8m022OYP6bLF7mVuVe0y/umxinsAXRd9z0k1ubWsAAAAASUVORK5CYII=', |
2255 ] | |
2256 })) | |
2257 | |
2258 s = DoGet(_REMOTE, i['Path']) | |
2259 self.assertEqual('Series', s['Type']) | |
2260 self.assertEqual(s['ID'], i['ID']) | |
2261 self.assertEqual(2, len(s['Instances'])) | |
39 | 2262 self.assertEqual(2, s['ExpectedNumberOfInstances']) |
2263 self.assertEqual('Complete', s['Status']) | |
40 | 2264 |
2265 a = DoGet(_REMOTE, '/instances/%s/tags?simplify' % s['Instances'][0]) | |
2266 b = DoGet(_REMOTE, '/instances/%s/tags?simplify' % s['Instances'][1]) | |
2267 self.assertTrue('ImageComments' in a or 'ImageComments' in b) | |
2268 if 'ImageComments' in a: | |
2269 self.assertEqual('Tutu', a['ImageComments']) | |
2270 else: | |
2271 self.assertEqual('Tutu', b['ImageComments']) | |
2272 | |
2273 patient = DoGet(_REMOTE, '/instances/%s/patient' % s['Instances'][0]) | |
2274 self.assertEqual(patient['MainDicomTags']['PatientName'].encode('utf-8'), | |
2275 'Sébastien Jodogne') | |
47 | 2276 |
2277 | |
2278 def test_create_binary(self): | |
2279 binary = ''.join(map(chr, range(256))) | |
2280 encoded = 'data:application/octet-stream;base64,' + base64.b64encode(binary) | |
2281 tags = { | |
2282 'PatientName' : 'Jodogne', | |
2283 '8899-8899' : encoded | |
2284 } | |
2285 | |
2286 i = DoPost(_REMOTE, '/tools/create-dicom', | |
2287 json.dumps({ | |
2288 'Tags' : tags | |
2289 })) | |
2290 | |
2291 self.assertEqual('Jodogne', DoGet(_REMOTE, '/instances/%s/content/PatientName' % i['ID']).strip()) | |
2292 self.assertEqual(binary, DoGet(_REMOTE, '/instances/%s/content/8899-8899' % i['ID']).strip()) | |
2293 | |
2294 i = DoPost(_REMOTE, '/tools/create-dicom', | |
2295 json.dumps({ | |
2296 'InterpretBinaryTags' : False, | |
2297 'Tags' : tags | |
2298 })) | |
2299 | |
2300 self.assertEqual('Jodogne', DoGet(_REMOTE, '/instances/%s/content/PatientName' % i['ID']).strip()) | |
2301 self.assertEqual(encoded, DoGet(_REMOTE, '/instances/%s/content/8899-8899' % i['ID'])[0:-1]) | |
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2303 |
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2304 def test_patient_ids_collision(self): |
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2305 # Upload 3 instances from 3 different studies, but with the |
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2306 # same PatientID |
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2307 for i in range(3): |
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2308 UploadInstance(_REMOTE, 'PatientIdsCollision/Image%d.dcm' % (i + 1)) |
e4352463ff74
test_patient_ids_collision
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
47
diff
changeset
|
2309 |
e4352463ff74
test_patient_ids_collision
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
47
diff
changeset
|
2310 a = DoPost(_REMOTE, '/tools/find', { 'Level' : 'Patient', |
e4352463ff74
test_patient_ids_collision
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
47
diff
changeset
|
2311 'Query' : { 'PatientName' : '*' }}) |
e4352463ff74
test_patient_ids_collision
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
47
diff
changeset
|
2312 self.assertEqual(1, len(a)) |
e4352463ff74
test_patient_ids_collision
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
47
diff
changeset
|
2313 self.assertEqual('COMMON', DoGet(_REMOTE, '/patients/%s' % a[0]) ['MainDicomTags']['PatientID']) |
e4352463ff74
test_patient_ids_collision
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
47
diff
changeset
|
2314 |
e4352463ff74
test_patient_ids_collision
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
47
diff
changeset
|
2315 a = DoPost(_REMOTE, '/tools/find', { 'Level' : 'Study', |
e4352463ff74
test_patient_ids_collision
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
47
diff
changeset
|
2316 'CaseSensitive' : True, |
e4352463ff74
test_patient_ids_collision
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
47
diff
changeset
|
2317 'Query' : { 'PatientName' : 'FOO\\HELLO' }}) |
e4352463ff74
test_patient_ids_collision
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
47
diff
changeset
|
2318 self.assertEqual(2, len(a)) |
e4352463ff74
test_patient_ids_collision
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
47
diff
changeset
|
2319 |
e4352463ff74
test_patient_ids_collision
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
47
diff
changeset
|
2320 a = DoPost(_REMOTE, '/tools/find', { 'Level' : 'Series', |
e4352463ff74
test_patient_ids_collision
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
47
diff
changeset
|
2321 'CaseSensitive' : False, |
e4352463ff74
test_patient_ids_collision
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
47
diff
changeset
|
2322 'Query' : { 'PatientName' : 'Foo' }}) |
e4352463ff74
test_patient_ids_collision
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
47
diff
changeset
|
2323 self.assertEqual(1, len(a)) |
e4352463ff74
test_patient_ids_collision
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
47
diff
changeset
|
2324 self.assertEqual('FOO^SERIES', DoGet(_REMOTE, '/series/%s/study' % a[0]) ['MainDicomTags']['StudyDescription']) |
e4352463ff74
test_patient_ids_collision
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
47
diff
changeset
|
2325 self.assertEqual('FOO', DoGet(_REMOTE, '/series/%s/study' % a[0]) ['PatientMainDicomTags']['PatientName']) |
e4352463ff74
test_patient_ids_collision
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
47
diff
changeset
|
2326 self.assertEqual('COMMON', DoGet(_REMOTE, '/series/%s/study' % a[0]) ['PatientMainDicomTags']['PatientID']) |
e4352463ff74
test_patient_ids_collision
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
47
diff
changeset
|
2327 |
e4352463ff74
test_patient_ids_collision
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
47
diff
changeset
|
2328 a = DoPost(_REMOTE, '/tools/find', { 'Level' : 'Study', |
e4352463ff74
test_patient_ids_collision
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
47
diff
changeset
|
2329 'Query' : { 'PatientName' : '*' }}) |
e4352463ff74
test_patient_ids_collision
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
47
diff
changeset
|
2330 self.assertEqual(3, len(a)) |
e4352463ff74
test_patient_ids_collision
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
47
diff
changeset
|
2331 d = map(lambda x: DoGet(_REMOTE, '/studies/%s' % x) ['MainDicomTags']['StudyDescription'], a) |
e4352463ff74
test_patient_ids_collision
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
47
diff
changeset
|
2332 self.assertTrue('FOO^SERIES' in d) |
e4352463ff74
test_patient_ids_collision
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
47
diff
changeset
|
2333 self.assertTrue('HELLO^SERIES' in d) |
e4352463ff74
test_patient_ids_collision
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
47
diff
changeset
|
2334 self.assertTrue('WORLD^SERIES' in d) |
e4352463ff74
test_patient_ids_collision
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
47
diff
changeset
|
2335 |
e4352463ff74
test_patient_ids_collision
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
47
diff
changeset
|
2336 d = map(lambda x: DoGet(_REMOTE, '/studies/%s' % x) ['PatientMainDicomTags']['PatientID'], a) |
e4352463ff74
test_patient_ids_collision
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
47
diff
changeset
|
2337 self.assertEqual(1, len(set(d))) |
e4352463ff74
test_patient_ids_collision
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
47
diff
changeset
|
2338 self.assertEqual('COMMON', d[0]) |
e4352463ff74
test_patient_ids_collision
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
47
diff
changeset
|
2339 |
e4352463ff74
test_patient_ids_collision
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
47
diff
changeset
|
2340 for i in a: |
e4352463ff74
test_patient_ids_collision
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
47
diff
changeset
|
2341 d = DoGet(_REMOTE, '/studies/%s' % i) ['MainDicomTags']['StudyDescription'] |
e4352463ff74
test_patient_ids_collision
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
47
diff
changeset
|
2342 p = DoGet(_REMOTE, '/studies/%s' % i) ['PatientMainDicomTags']['PatientName'] |
e4352463ff74
test_patient_ids_collision
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
47
diff
changeset
|
2343 self.assertEqual('%s^SERIES' % p, d) |
49
e7f9b8199545
test_bitbucket_issue_4
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
48
diff
changeset
|
2344 |
e7f9b8199545
test_bitbucket_issue_4
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
48
diff
changeset
|
2345 |
e7f9b8199545
test_bitbucket_issue_4
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
48
diff
changeset
|
2346 def test_bitbucket_issue_4(self): |
e7f9b8199545
test_bitbucket_issue_4
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
48
diff
changeset
|
2347 UploadInstance(_REMOTE, 'Brainix/Epi/IM-0001-0001.dcm') |
e7f9b8199545
test_bitbucket_issue_4
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
48
diff
changeset
|
2348 UploadInstance(_REMOTE, 'Brainix/Epi/IM-0001-0002.dcm') |
e7f9b8199545
test_bitbucket_issue_4
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
48
diff
changeset
|
2349 UploadInstance(_REMOTE, 'Brainix/Epi/IM-0001-0003.dcm') |
e7f9b8199545
test_bitbucket_issue_4
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
48
diff
changeset
|
2350 UploadInstance(_REMOTE, 'Formats/Jpeg.dcm') |
e7f9b8199545
test_bitbucket_issue_4
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
48
diff
changeset
|
2351 UploadInstance(_REMOTE, 'Formats/JpegLossless.dcm') |
e7f9b8199545
test_bitbucket_issue_4
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
48
diff
changeset
|
2352 UploadInstance(_REMOTE, 'Formats/Rle.dcm') |
e7f9b8199545
test_bitbucket_issue_4
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
48
diff
changeset
|
2353 |
e7f9b8199545
test_bitbucket_issue_4
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
48
diff
changeset
|
2354 self.assertEqual(0, len(DoGet(_LOCAL, '/instances'))) |
e7f9b8199545
test_bitbucket_issue_4
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
48
diff
changeset
|
2355 self.assertEqual(6, len(DoGet(_REMOTE, '/instances'))) |
e7f9b8199545
test_bitbucket_issue_4
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
48
diff
changeset
|
2356 |
e7f9b8199545
test_bitbucket_issue_4
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
48
diff
changeset
|
2357 p = DoGet(_REMOTE, '/patients') |
e7f9b8199545
test_bitbucket_issue_4
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
48
diff
changeset
|
2358 self.assertEqual(2, len(p)) |
e7f9b8199545
test_bitbucket_issue_4
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
48
diff
changeset
|
2359 i1 = map(lambda x: x['ID'], DoGet(_REMOTE, '/patients/%s/instances' % p[0])) |
e7f9b8199545
test_bitbucket_issue_4
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
48
diff
changeset
|
2360 i2 = map(lambda x: x['ID'], DoGet(_REMOTE, '/patients/%s/instances' % p[1])) |
e7f9b8199545
test_bitbucket_issue_4
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
48
diff
changeset
|
2361 self.assertEqual(3, len(i1)) |
e7f9b8199545
test_bitbucket_issue_4
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
48
diff
changeset
|
2362 self.assertEqual(3, len(i2)) |
e7f9b8199545
test_bitbucket_issue_4
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
48
diff
changeset
|
2363 |
e7f9b8199545
test_bitbucket_issue_4
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
48
diff
changeset
|
2364 j = DoPost(_REMOTE, '/modalities/orthanctest/store', i2[0:1] + i1 + i2[1:3]) |
e7f9b8199545
test_bitbucket_issue_4
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
48
diff
changeset
|
2365 |
e7f9b8199545
test_bitbucket_issue_4
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
48
diff
changeset
|
2366 self.assertEqual(6, len(DoGet(_LOCAL, '/instances'))) |
50
8de63d56cf11
test_create_sequence
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
49
diff
changeset
|
2367 |
8de63d56cf11
test_create_sequence
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
49
diff
changeset
|
2368 |
8de63d56cf11
test_create_sequence
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
49
diff
changeset
|
2369 def test_create_sequence(self): |
8de63d56cf11
test_create_sequence
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
49
diff
changeset
|
2370 i = DoPost(_REMOTE, '/tools/create-dicom', |
8de63d56cf11
test_create_sequence
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
49
diff
changeset
|
2371 json.dumps({ |
8de63d56cf11
test_create_sequence
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
49
diff
changeset
|
2372 'Tags' : { |
8de63d56cf11
test_create_sequence
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
49
diff
changeset
|
2373 'SpecificCharacterSet': 'ISO_IR 100', # Encode using Latin1 |
8de63d56cf11
test_create_sequence
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
49
diff
changeset
|
2374 'PatientName': 'Jodogne^', |
51
264a20a0276d
test_modify_sequence
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
50
diff
changeset
|
2375 'ReferencedStudySequence': GenerateTestSequence(), |
50
8de63d56cf11
test_create_sequence
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
49
diff
changeset
|
2376 } |
8de63d56cf11
test_create_sequence
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
49
diff
changeset
|
2377 }))['ID'] |
8de63d56cf11
test_create_sequence
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
49
diff
changeset
|
2378 |
8de63d56cf11
test_create_sequence
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
49
diff
changeset
|
2379 self.assertEqual('Jodogne^', DoGet(_REMOTE, '/instances/%s/content/PatientName' % i)) |
8de63d56cf11
test_create_sequence
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
49
diff
changeset
|
2380 self.assertEqual('Hello^', DoGet(_REMOTE, '/instances/%s/content/ReferencedStudySequence/0/StudyDescription' % i)) |
8de63d56cf11
test_create_sequence
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
49
diff
changeset
|
2381 self.assertEqual('Toto', DoGet(_REMOTE, '/instances/%s/content/ReferencedStudySequence/0/ReferencedStudySequence/0/StudyDescription' % i)) |
8de63d56cf11
test_create_sequence
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
49
diff
changeset
|
2382 self.assertEqual('Tata', DoGet(_REMOTE, '/instances/%s/content/ReferencedStudySequence/0/ReferencedStudySequence/1/StudyDescription' % i)) |
8de63d56cf11
test_create_sequence
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
49
diff
changeset
|
2383 self.assertEqual(u'Sébastien^'.encode('latin-1'), |
8de63d56cf11
test_create_sequence
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
49
diff
changeset
|
2384 DoGet(_REMOTE, '/instances/%s/content/ReferencedStudySequence/1/StudyDescription' % i)) |
51
264a20a0276d
test_modify_sequence
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
50
diff
changeset
|
2385 |
264a20a0276d
test_modify_sequence
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
50
diff
changeset
|
2386 |
264a20a0276d
test_modify_sequence
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
50
diff
changeset
|
2387 def test_modify_sequence(self): |
264a20a0276d
test_modify_sequence
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
50
diff
changeset
|
2388 i = UploadInstance(_REMOTE, 'PrivateTags.dcm')['ID'] |
264a20a0276d
test_modify_sequence
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
50
diff
changeset
|
2389 self.assertRaises(Exception, lambda: DoGet(_REMOTE, '/instances/%s/content/ReferencedStudySequence' % i)) |
264a20a0276d
test_modify_sequence
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
50
diff
changeset
|
2390 |
264a20a0276d
test_modify_sequence
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
50
diff
changeset
|
2391 j = DoPost(_REMOTE, '/instances/%s/modify' % i, |
264a20a0276d
test_modify_sequence
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
50
diff
changeset
|
2392 json.dumps({ |
264a20a0276d
test_modify_sequence
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
50
diff
changeset
|
2393 "Replace" : { |
264a20a0276d
test_modify_sequence
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
50
diff
changeset
|
2394 "PatientName" : "hello", |
264a20a0276d
test_modify_sequence
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
50
diff
changeset
|
2395 'ReferencedStudySequence': GenerateTestSequence(), |
264a20a0276d
test_modify_sequence
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
50
diff
changeset
|
2396 }, |
264a20a0276d
test_modify_sequence
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
50
diff
changeset
|
2397 }), |
264a20a0276d
test_modify_sequence
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
50
diff
changeset
|
2398 'application/json') |
264a20a0276d
test_modify_sequence
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
50
diff
changeset
|
2399 j = DoPost(_REMOTE, '/instances', j, 'application/dicom')['ID'] |
264a20a0276d
test_modify_sequence
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
50
diff
changeset
|
2400 DoDelete(_REMOTE, '/instances/%s' % i) |
264a20a0276d
test_modify_sequence
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
50
diff
changeset
|
2401 |
52 | 2402 self.assertEqual(2, len(DoGet(_REMOTE, '/instances/%s/content/ReferencedStudySequence' % j))) |
2403 | |
2404 | |
2405 def test_compression(self): | |
2406 i = UploadInstance(_REMOTE, 'DummyCT.dcm')['ID'] | |
2407 | |
2408 data = DoGetRaw(_REMOTE, '/instances/%s/attachments/dicom-as-json/data' % i)[1] | |
2409 | |
2410 # "StorageCompression" is enabled in the Orthanc to be tested, | |
2411 # uncompress the data before running the test | |
2412 if DoGet(_REMOTE, '/instances/%s/attachments/dicom-as-json/is-compressed' % i) != 0: | |
2413 DoPost(_REMOTE, '/instances/%s/attachments/dicom-as-json/uncompress' % i) | |
2414 | |
2415 cs = DoGet(_REMOTE, '/statistics')['TotalDiskSize'] | |
2416 us = DoGet(_REMOTE, '/statistics')['TotalUncompressedSize'] | |
2417 size = DoGet(_REMOTE, '/instances/%s/attachments/dicom-as-json/size' % i) | |
2418 md5 = DoGet(_REMOTE, '/instances/%s/attachments/dicom-as-json/md5' % i) | |
2419 self.assertEqual(data, DoGetRaw(_REMOTE, '/instances/%s/attachments/dicom-as-json/compressed-data' % i)[1]) | |
2420 self.assertEqual(md5, DoGet(_REMOTE, '/instances/%s/attachments/dicom-as-json/compressed-md5' % i)) | |
2421 self.assertEqual(size, DoGet(_REMOTE, '/instances/%s/attachments/dicom-as-json/compressed-size' % i)) | |
2422 | |
2423 ops = DoGet(_REMOTE, '/instances/%s/attachments/dicom-as-json' % i) | |
2424 self.assertTrue('compress' in ops) | |
2425 self.assertTrue('uncompress' in ops) | |
2426 self.assertTrue('is-compressed' in ops) | |
2427 self.assertEqual(0, DoGet(_REMOTE, '/instances/%s/attachments/dicom-as-json/is-compressed' % i)) | |
2428 DoPost(_REMOTE, '/instances/%s/attachments/dicom-as-json/verify-md5' % i) | |
2429 | |
2430 DoPost(_REMOTE, '/instances/%s/attachments/dicom-as-json/compress' % i) | |
2431 DoPost(_REMOTE, '/instances/%s/attachments/dicom-as-json/verify-md5' % i) | |
2432 self.assertEqual(1, DoGet(_REMOTE, '/instances/%s/attachments/dicom-as-json/is-compressed' % i)) | |
2433 self.assertLess(cs, DoGet(_REMOTE, '/statistics')['TotalDiskSize']) | |
2434 self.assertEqual(us, DoGet(_REMOTE, '/statistics')['TotalUncompressedSize']) | |
2435 self.assertGreater(len(data), len(DoGetRaw(_REMOTE, '/instances/%s/attachments/dicom-as-json/compressed-data' % i)[1])) | |
2436 self.assertGreater(size, DoGet(_REMOTE, '/instances/%s/attachments/dicom-as-json/compressed-size' % i)) | |
2437 self.assertEqual(size, DoGet(_REMOTE, '/instances/%s/attachments/dicom-as-json/size' % i)) | |
2438 self.assertEqual(md5, DoGet(_REMOTE, '/instances/%s/attachments/dicom-as-json/md5' % i)) | |
2439 self.assertNotEqual(md5, DoGet(_REMOTE, '/instances/%s/attachments/dicom-as-json/compressed-md5' % i)) | |
2440 | |
2441 DoPost(_REMOTE, '/instances/%s/attachments/dicom-as-json/uncompress' % i) | |
2442 DoPost(_REMOTE, '/instances/%s/attachments/dicom-as-json/verify-md5' % i) | |
2443 self.assertEqual(0, DoGet(_REMOTE, '/instances/%s/attachments/dicom-as-json/is-compressed' % i)) | |
2444 self.assertEqual(data, DoGetRaw(_REMOTE, '/instances/%s/attachments/dicom-as-json/compressed-data' % i)[1]) | |
2445 self.assertEqual(size, DoGet(_REMOTE, '/instances/%s/attachments/dicom-as-json/compressed-size' % i)) | |
2446 self.assertEqual(size, DoGet(_REMOTE, '/instances/%s/attachments/dicom-as-json/size' % i)) | |
2447 self.assertEqual(md5, DoGet(_REMOTE, '/instances/%s/attachments/dicom-as-json/md5' % i)) | |
2448 self.assertEqual(md5, DoGet(_REMOTE, '/instances/%s/attachments/dicom-as-json/compressed-md5' % i)) | |
2449 self.assertEqual(cs, DoGet(_REMOTE, '/statistics')['TotalDiskSize']) | |
2450 self.assertEqual(us, DoGet(_REMOTE, '/statistics')['TotalUncompressedSize']) | |
53 | 2451 |
2452 | |
2453 def test_ordered_slices(self): | |
2454 i = UploadInstance(_REMOTE, 'Multiframe.dcm')['ID'] | |
2455 s = DoGet(_REMOTE, '/instances/%s' % i)['ParentSeries'] | |
2456 o = DoGet(_REMOTE, '/series/%s/ordered-slices' % s) | |
2457 self.assertEqual('Sequence', o['Type']) | |
2458 self.assertEqual(1, len(o['Dicom'])) | |
2459 self.assertEqual('/instances/9e05eb0a-18b6268c-e0d36085-8ddab517-3b5aec02/file', o['Dicom'][0]) | |
2460 self.assertEqual(76, len(o['Slices'])) | |
2461 for j in range(76): | |
2462 self.assertEqual('/instances/9e05eb0a-18b6268c-e0d36085-8ddab517-3b5aec02/frames/%d' % j, o['Slices'][j]) | |
2463 | |
2464 i = UploadInstance(_REMOTE, 'Brainix/Epi/IM-0001-0001.dcm')['ID'] | |
2465 j = UploadInstance(_REMOTE, 'Brainix/Epi/IM-0001-0002.dcm')['ID'] | |
2466 k = UploadInstance(_REMOTE, 'Brainix/Epi/IM-0001-0003.dcm')['ID'] | |
2467 s = DoGet(_REMOTE, '/instances/%s' % i)['ParentSeries'] | |
2468 o = DoGet(_REMOTE, '/series/%s/ordered-slices' % s) | |
2469 | |
2470 self.assertEqual('Volume', o['Type']) | |
2471 self.assertEqual(3, len(o['Dicom'])) | |
2472 self.assertEqual(3, len(o['Slices'])) | |
2473 self.assertEqual('/instances/%s/file' % i, o['Dicom'][2]) | |
2474 self.assertEqual('/instances/%s/file' % j, o['Dicom'][1]) | |
2475 self.assertEqual('/instances/%s/file' % k, o['Dicom'][0]) | |
2476 self.assertEqual('/instances/%s/frames/0' % i, o['Slices'][2]) | |
2477 self.assertEqual('/instances/%s/frames/0' % j, o['Slices'][1]) | |
2478 self.assertEqual('/instances/%s/frames/0' % k, o['Slices'][0]) | |
2479 | |
2480 i = UploadInstance(_REMOTE, 'Beaufix/IM-0001-0001.dcm')['ID'] | |
2481 j = UploadInstance(_REMOTE, 'Beaufix/IM-0001-0002.dcm')['ID'] | |
2482 s = DoGet(_REMOTE, '/instances/%s' % i)['ParentSeries'] | |
2483 o = DoGet(_REMOTE, '/series/%s/ordered-slices' % s) | |
2484 | |
2485 self.assertEqual('Sequence', o['Type']) | |
2486 self.assertEqual(2, len(o['Dicom'])) | |
2487 self.assertEqual(2, len(o['Slices'])) | |
2488 self.assertEqual('/instances/%s/file' % i, o['Dicom'][0]) | |
2489 self.assertEqual('/instances/%s/file' % j, o['Dicom'][1]) | |
2490 self.assertEqual('/instances/%s/frames/0' % i, o['Slices'][0]) | |
2491 self.assertEqual('/instances/%s/frames/0' % j, o['Slices'][1]) | |
54
c5f8a6b0d85e
test_incoming_movescu_accession
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
53
diff
changeset
|
2492 |
c5f8a6b0d85e
test_incoming_movescu_accession
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
53
diff
changeset
|
2493 |
c5f8a6b0d85e
test_incoming_movescu_accession
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
53
diff
changeset
|
2494 def test_incoming_movescu_accession(self): |
c5f8a6b0d85e
test_incoming_movescu_accession
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
53
diff
changeset
|
2495 UploadInstance(_REMOTE, 'Knee/T1/IM-0001-0001.dcm') |
c5f8a6b0d85e
test_incoming_movescu_accession
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
53
diff
changeset
|
2496 |
c5f8a6b0d85e
test_incoming_movescu_accession
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
53
diff
changeset
|
2497 self.assertEqual(0, len(DoGet(_LOCAL, '/patients'))) |
c5f8a6b0d85e
test_incoming_movescu_accession
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
53
diff
changeset
|
2498 CallMoveScu([ '--study', '-k', '0008,0052=STUDY', '-k', 'AccessionNumber=nope' ]) |
c5f8a6b0d85e
test_incoming_movescu_accession
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
53
diff
changeset
|
2499 self.assertEqual(0, len(DoGet(_LOCAL, '/patients'))) |
c5f8a6b0d85e
test_incoming_movescu_accession
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
53
diff
changeset
|
2500 CallMoveScu([ '--study', '-k', '0008,0052=PATIENT', '-k', 'AccessionNumber=A10003245599' ]) |
c5f8a6b0d85e
test_incoming_movescu_accession
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
53
diff
changeset
|
2501 self.assertEqual(0, len(DoGet(_LOCAL, '/patients'))) |
c5f8a6b0d85e
test_incoming_movescu_accession
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
53
diff
changeset
|
2502 CallMoveScu([ '--study', '-k', '0008,0052=STUDY', '-k', 'AccessionNumber=A10003245599' ]) |
c5f8a6b0d85e
test_incoming_movescu_accession
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
53
diff
changeset
|
2503 self.assertEqual(1, len(DoGet(_LOCAL, '/patients'))) |
c5f8a6b0d85e
test_incoming_movescu_accession
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
53
diff
changeset
|
2504 |
55 | 2505 |
2506 def test_dicom_to_json(self): | |
2507 i = UploadInstance(_REMOTE, 'PrivateMDNTags.dcm')['ID'] | |
60
cd3c7f70f139
test backward compatibility with Orthanc 0.9.4
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
59
diff
changeset
|
2508 j = UploadInstance(_REMOTE, 'PrivateTags.dcm')['ID'] |
cd3c7f70f139
test backward compatibility with Orthanc 0.9.4
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
59
diff
changeset
|
2509 |
cd3c7f70f139
test backward compatibility with Orthanc 0.9.4
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
59
diff
changeset
|
2510 t = DoGet(_REMOTE, '/instances/%s/tags?simplify' % i) |
cd3c7f70f139
test backward compatibility with Orthanc 0.9.4
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
59
diff
changeset
|
2511 with open(GetDatabasePath('PrivateMDNTagsSimplify.json'), 'r') as f: |
cd3c7f70f139
test backward compatibility with Orthanc 0.9.4
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
59
diff
changeset
|
2512 self.assertEqual(json.loads(f.read()), t) |
55 | 2513 |
2514 t = DoGet(_REMOTE, '/instances/%s/tags' % i) | |
2515 with open(GetDatabasePath('PrivateMDNTagsFull.json'), 'r') as f: | |
2516 self.assertEqual(json.loads(f.read()), t) | |
2517 | |
60
cd3c7f70f139
test backward compatibility with Orthanc 0.9.4
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
59
diff
changeset
|
2518 t = DoGet(_REMOTE, '/instances/%s/tags?simplify' % j) |
cd3c7f70f139
test backward compatibility with Orthanc 0.9.4
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
59
diff
changeset
|
2519 with open(GetDatabasePath('PrivateTagsSimplify.json'), 'r') as f: |
cd3c7f70f139
test backward compatibility with Orthanc 0.9.4
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
59
diff
changeset
|
2520 a = json.loads(f.read()) |
cd3c7f70f139
test backward compatibility with Orthanc 0.9.4
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
59
diff
changeset
|
2521 self.assertEqual(a, t) |
cd3c7f70f139
test backward compatibility with Orthanc 0.9.4
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
59
diff
changeset
|
2522 |
cd3c7f70f139
test backward compatibility with Orthanc 0.9.4
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
59
diff
changeset
|
2523 t = DoGet(_REMOTE, '/instances/%s/tags' % j) |
cd3c7f70f139
test backward compatibility with Orthanc 0.9.4
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
59
diff
changeset
|
2524 with open(GetDatabasePath('PrivateTagsFull.json'), 'r') as f: |
cd3c7f70f139
test backward compatibility with Orthanc 0.9.4
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
59
diff
changeset
|
2525 a = json.loads(f.read()) |
65
09fc27e0899a
patch for testing windows builds
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
64
diff
changeset
|
2526 |
09fc27e0899a
patch for testing windows builds
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
64
diff
changeset
|
2527 aa = json.dumps(a).replace('2e+022', '2e+22') |
09fc27e0899a
patch for testing windows builds
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
64
diff
changeset
|
2528 tt = json.dumps(t).replace('2e+022', '2e+22') |
09fc27e0899a
patch for testing windows builds
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
64
diff
changeset
|
2529 self.assertEqual(aa, tt) |
57 | 2530 |
2531 | |
2532 def test_batch_archive(self): | |
2533 UploadInstance(_REMOTE, 'Knee/T1/IM-0001-0001.dcm') | |
2534 UploadInstance(_REMOTE, 'Knee/T1/IM-0001-0002.dcm') | |
2535 UploadInstance(_REMOTE, 'Knee/T2/IM-0001-0001.dcm') | |
2536 UploadInstance(_REMOTE, 'Knee/T2/IM-0001-0002.dcm') | |
2537 UploadInstance(_REMOTE, 'Brainix/Epi/IM-0001-0001.dcm') | |
2538 UploadInstance(_REMOTE, 'Brainix/Epi/IM-0001-0002.dcm') | |
2539 UploadInstance(_REMOTE, 'Brainix/Flair/IM-0001-0001.dcm') | |
2540 UploadInstance(_REMOTE, 'Brainix/Flair/IM-0001-0002.dcm') | |
2541 | |
2542 s = DoPost(_REMOTE, '/tools/create-archive', [ ]) | |
2543 z = zipfile.ZipFile(StringIO(s), "r") | |
2544 self.assertEqual(0, len(z.namelist())) | |
2545 | |
2546 # One patient | |
2547 s = DoPost(_REMOTE, '/tools/create-archive', [ 'ca29faea-b6a0e17f-067743a1-8b778011-a48b2a17' ]) | |
2548 z = zipfile.ZipFile(StringIO(s), "r") | |
2549 self.assertEqual(4, len(z.namelist())) | |
2550 | |
2551 # One patient + twice its study + one series from other patient | |
2552 s = DoPost(_REMOTE, '/tools/create-archive', [ | |
2553 'ca29faea-b6a0e17f-067743a1-8b778011-a48b2a17', | |
2554 '0a9b3153-2512774b-2d9580de-1fc3dcf6-3bd83918', | |
2555 '1e2c125c-411b8e86-3f4fe68e-a7584dd3-c6da78f0' | |
2556 ]) | |
2557 z = zipfile.ZipFile(StringIO(s), "r") | |
2558 self.assertEqual(6, len(z.namelist())) | |
2559 | |
2560 # One patient + one series + one instance | |
2561 s = DoPost(_REMOTE, '/tools/create-archive', [ | |
2562 'ca29faea-b6a0e17f-067743a1-8b778011-a48b2a17', | |
2563 '1e2c125c-411b8e86-3f4fe68e-a7584dd3-c6da78f0', | |
2564 '1d429ccb-bdcc78a1-7d129d6a-ba4966ed-fe4dbd87' | |
2565 ]) | |
2566 z = zipfile.ZipFile(StringIO(s), "r") | |
2567 self.assertEqual(7, len(z.namelist())) | |
59
84378ada15ab
test_decode_brainix_as_jpeg
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
58
diff
changeset
|
2568 |
84378ada15ab
test_decode_brainix_as_jpeg
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
58
diff
changeset
|
2569 |
84378ada15ab
test_decode_brainix_as_jpeg
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
58
diff
changeset
|
2570 def test_decode_brainix_as_jpeg(self): |
84378ada15ab
test_decode_brainix_as_jpeg
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
58
diff
changeset
|
2571 i = UploadInstance(_REMOTE, 'Brainix/Epi/IM-0001-0001.dcm')['ID'] |
84378ada15ab
test_decode_brainix_as_jpeg
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
58
diff
changeset
|
2572 |
84378ada15ab
test_decode_brainix_as_jpeg
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
58
diff
changeset
|
2573 j = GetImage(_REMOTE, '/instances/%s/preview' % i) |
84378ada15ab
test_decode_brainix_as_jpeg
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
58
diff
changeset
|
2574 self.assertEqual('PNG', j.format) |
84378ada15ab
test_decode_brainix_as_jpeg
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
58
diff
changeset
|
2575 self.assertEqual(j.size[0], 256) |
84378ada15ab
test_decode_brainix_as_jpeg
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
58
diff
changeset
|
2576 self.assertEqual(j.size[1], 256) |
84378ada15ab
test_decode_brainix_as_jpeg
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
58
diff
changeset
|
2577 |
84378ada15ab
test_decode_brainix_as_jpeg
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
58
diff
changeset
|
2578 j = GetImage(_REMOTE, '/instances/%s/preview' % i, headers = { 'Accept' : '*/*' }) |
84378ada15ab
test_decode_brainix_as_jpeg
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
58
diff
changeset
|
2579 self.assertEqual('PNG', j.format) |
84378ada15ab
test_decode_brainix_as_jpeg
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
58
diff
changeset
|
2580 |
84378ada15ab
test_decode_brainix_as_jpeg
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
58
diff
changeset
|
2581 j = GetImage(_REMOTE, '/instances/%s/preview' % i, headers = { 'Accept' : 'image/*' }) |
84378ada15ab
test_decode_brainix_as_jpeg
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
58
diff
changeset
|
2582 self.assertEqual('PNG', j.format) |
84378ada15ab
test_decode_brainix_as_jpeg
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
58
diff
changeset
|
2583 |
84378ada15ab
test_decode_brainix_as_jpeg
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
58
diff
changeset
|
2584 j = GetImage(_REMOTE, '/instances/%s/preview' % i, headers = { 'Accept' : 'image/png' }) |
84378ada15ab
test_decode_brainix_as_jpeg
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
58
diff
changeset
|
2585 self.assertEqual('PNG', j.format) |
84378ada15ab
test_decode_brainix_as_jpeg
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
58
diff
changeset
|
2586 |
84378ada15ab
test_decode_brainix_as_jpeg
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
58
diff
changeset
|
2587 j = GetImage(_REMOTE, '/instances/%s/preview' % i, headers = { 'Accept' : 'image/jpeg' }) |
84378ada15ab
test_decode_brainix_as_jpeg
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
58
diff
changeset
|
2588 self.assertEqual('JPEG', j.format) |
84378ada15ab
test_decode_brainix_as_jpeg
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
58
diff
changeset
|
2589 self.assertEqual(j.size[0], 256) |
84378ada15ab
test_decode_brainix_as_jpeg
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
58
diff
changeset
|
2590 self.assertEqual(j.size[1], 256) |
84378ada15ab
test_decode_brainix_as_jpeg
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
58
diff
changeset
|
2591 |
84378ada15ab
test_decode_brainix_as_jpeg
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
58
diff
changeset
|
2592 a = len(DoGet(_REMOTE, '/instances/%s/preview?quality=50' % i, headers = { 'Accept' : 'image/jpeg' })) |
84378ada15ab
test_decode_brainix_as_jpeg
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
58
diff
changeset
|
2593 b = len(DoGet(_REMOTE, '/instances/%s/preview' % i, headers = { 'Accept' : 'image/jpeg' })) |
84378ada15ab
test_decode_brainix_as_jpeg
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
58
diff
changeset
|
2594 self.assertLess(a, b) |
84378ada15ab
test_decode_brainix_as_jpeg
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
58
diff
changeset
|
2595 |
84378ada15ab
test_decode_brainix_as_jpeg
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
58
diff
changeset
|
2596 j = GetImage(_REMOTE, '/instances/%s/image-uint8' % i, headers = { 'Accept' : 'image/jpeg' }) |
84378ada15ab
test_decode_brainix_as_jpeg
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
58
diff
changeset
|
2597 self.assertEqual('JPEG', j.format) |
84378ada15ab
test_decode_brainix_as_jpeg
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
58
diff
changeset
|
2598 |
84378ada15ab
test_decode_brainix_as_jpeg
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
58
diff
changeset
|
2599 # 16bit encoding is not supported with JPEG |
84378ada15ab
test_decode_brainix_as_jpeg
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
58
diff
changeset
|
2600 self.assertRaises(Exception, lambda: GetImage(_REMOTE, '/instances/%s/image-uint16' % i, headers = { 'Accept' : 'image/jpeg' })) |
84378ada15ab
test_decode_brainix_as_jpeg
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
58
diff
changeset
|
2601 self.assertRaises(Exception, lambda: GetImage(_REMOTE, '/instances/%s/image-int16' % i, headers = { 'Accept' : 'image/jpeg' })) |
84378ada15ab
test_decode_brainix_as_jpeg
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
58
diff
changeset
|
2602 |
84378ada15ab
test_decode_brainix_as_jpeg
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parents:
58
diff
changeset
|
2603 # No matching content type |
84378ada15ab
test_decode_brainix_as_jpeg
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
changeset
|
2604 self.assertRaises(Exception, lambda: GetImage(_REMOTE, '/instances/%s/preview' % i, headers = { 'Accept' : 'application/pdf' })) |