Mercurial > hg > orthanc-tests
annotate Tests/Tests.py @ 328:8a462f9c5a97
test_store_compressed
| author | Sebastien Jodogne <s.jodogne@gmail.com> |
|---|---|
| date | Sun, 23 Aug 2020 12:05:07 +0200 |
| parents | 33ba5b1a0dd9 |
| children | dc41bfa4bda5 |
| rev | line source |
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| 22 | 1 #!/usr/bin/env python |
| 2 # -*- coding: utf-8 -*- | |
| 3 | |
| 4 | |
| 3 | 5 # Orthanc - A Lightweight, RESTful DICOM Store |
| 73 | 6 # Copyright (C) 2012-2016 Sebastien Jodogne, Medical Physics |
| 3 | 7 # Department, University Hospital of Liege, Belgium |
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8 # Copyright (C) 2017-2020 Osimis S.A., Belgium |
| 3 | 9 # |
| 10 # This program is free software: you can redistribute it and/or | |
| 11 # modify it under the terms of the GNU General Public License as | |
| 12 # published by the Free Software Foundation, either version 3 of the | |
| 13 # License, or (at your option) any later version. | |
| 14 # | |
| 15 # This program is distributed in the hope that it will be useful, but | |
| 16 # WITHOUT ANY WARRANTY; without even the implied warranty of | |
| 17 # MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU | |
| 18 # General Public License for more details. | |
| 19 # | |
| 20 # You should have received a copy of the GNU General Public License | |
| 21 # along with this program. If not, see <http://www.gnu.org/licenses/>. | |
| 22 | |
| 23 | |
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24 import base64 |
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25 import bz2 |
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26 import copy |
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27 import pprint |
| 14 | 28 import tempfile |
| 3 | 29 import unittest |
| 295 | 30 import shutil |
| 3 | 31 |
| 11 | 32 from PIL import ImageChops |
| 3 | 33 from Toolbox import * |
| 13 | 34 from xml.dom import minidom |
| 312 | 35 from datetime import datetime |
| 3 | 36 |
| 37 _LOCAL = None | |
| 38 _REMOTE = None | |
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39 _DOCKER = False |
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40 |
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41 |
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42 def SetOrthancParameters(local, remote, withinDocker): |
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43 global _LOCAL, _REMOTE, _DOCKER |
| 3 | 44 _LOCAL = local |
| 45 _REMOTE = remote | |
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46 _DOCKER = withinDocker |
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47 |
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48 |
| 14 | 49 def ExtractDicomTags(rawDicom, tags): |
| 50 with tempfile.NamedTemporaryFile(delete = True) as f: | |
| 51 f.write(rawDicom) | |
| 52 f.flush() | |
| 45 | 53 data = subprocess.check_output([ FindExecutable('dcm2xml'), f.name ]) |
| 14 | 54 |
| 55 result = [] | |
| 56 for tag in tags: | |
| 57 match = re.search('<element[^>]+name="%s">([^>]*)</element>' % tag, data) | |
| 58 if match == None: | |
| 59 result.append('') | |
| 60 else: | |
| 61 result.append(match.group(1)) | |
| 62 | |
| 63 return result | |
| 64 | |
| 65 | |
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66 def CompareLists(a, b): |
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67 if len(a) != len(b): |
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68 return False |
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69 |
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70 for i in range(len(a)): |
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71 d = a[i] - b[i] |
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72 if abs(d) >= 0.51: # Add some tolerance for rounding errors |
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73 return False |
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74 |
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75 return True |
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76 |
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77 |
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78 def CompareTags(a, b, tagsToIgnore): |
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79 for i in tagsToIgnore: |
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80 if i in a: |
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81 del a[i] |
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82 if i in b: |
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83 del b[i] |
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84 |
| 123 | 85 if a.keys() == b.keys(): |
| 86 return True | |
| 87 else: | |
| 88 print('Mismatch in tags: %s' % str(set(a.keys()) ^ set(b.keys()))) | |
| 89 return False | |
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90 |
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91 |
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92 def CallFindScu(args): |
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93 p = subprocess.Popen([ FindExecutable('findscu'), |
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94 '-P', '-aec', _REMOTE['DicomAet'], '-aet', _LOCAL['DicomAet'], |
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95 _REMOTE['Server'], str(_REMOTE['DicomPort']) ] + args, |
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96 stderr=subprocess.PIPE) |
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97 return p.communicate()[1] |
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98 |
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99 |
| 142 | 100 def GetMoveScuCommand(): |
| 101 return [ | |
| 102 FindExecutable('movescu'), | |
| 103 '--move', _LOCAL['DicomAet'], # Target AET (i.e. storescp) | |
| 104 '--call', _REMOTE['DicomAet'], # Called AET (i.e. Orthanc) | |
| 105 '--aetitle', _LOCAL['DicomAet'], # Calling AET (i.e. storescp) | |
| 106 _REMOTE['Server'], | |
| 107 str(_REMOTE['DicomPort']) | |
| 108 ] | |
| 109 | |
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110 |
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111 def CallMoveScu(args): |
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112 try: |
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113 subprocess.check_call(GetMoveScuCommand() + args, |
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114 stderr = subprocess.PIPE) |
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115 except subprocess.CalledProcessError as e: |
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116 # The error code "69" corresponds to "EXITCODE_CMOVE_ERROR", |
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117 # that has been introduced in DCMTK 3.6.2. This error code is |
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118 # expected by some tests that try and C-MOVE non-existing |
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119 # DICOM instances. |
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120 # https://groups.google.com/d/msg/orthanc-users/DCRc5NeSCbM/DG-pSWj-BwAJ |
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121 if e.returncode != 69: |
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122 raise e |
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123 |
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124 |
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125 def GenerateTestSequence(): |
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126 return [ |
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127 { |
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128 'StudyDescription': 'Hello^', |
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129 'ReferencedStudySequence' : [ |
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130 { |
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131 'StudyDescription': 'Toto', |
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132 }, |
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133 { |
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134 'StudyDescription': 'Tata', |
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135 }, |
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136 ] |
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137 }, |
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138 { |
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139 'StudyDescription': 'Sébastien^', |
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140 'StudyDate' : '19700202', |
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141 } |
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142 ] |
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143 |
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144 |
| 3 | 145 class Orthanc(unittest.TestCase): |
| 146 def setUp(self): | |
| 83 | 147 if (sys.version_info >= (3, 0)): |
| 148 # Remove annoying warnings about unclosed socket in Python 3 | |
| 149 import warnings | |
| 150 warnings.simplefilter("ignore", ResourceWarning) | |
| 151 | |
| 3 | 152 DropOrthanc(_LOCAL) |
| 153 DropOrthanc(_REMOTE) | |
| 174 | 154 UninstallLuaCallbacks(_REMOTE) |
| 312 | 155 #print("%s: In test %s" % (datetime.now(), self._testMethodName)) |
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156 |
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157 def AssertSameImages(self, truth, url): |
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158 im = GetImage(_REMOTE, url) |
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159 self.assertTrue(CompareLists(truth, im.getdata())) |
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160 |
| 3 | 161 |
| 162 def test_system(self): | |
| 177 | 163 self.assertTrue('Version' in DoGet(_REMOTE, '/system')) |
| 164 self.assertEqual('0', DoGet(_REMOTE, '/statistics')['TotalDiskSize']) | |
| 165 self.assertEqual('0', DoGet(_REMOTE, '/statistics')['TotalUncompressedSize']) | |
| 166 | |
| 167 systemInfo = DoGet(_REMOTE, '/system') | |
| 168 if systemInfo["Version"] == "mainline": | |
| 169 print "Skipping version checks since you're currently in mainline" | |
| 170 return | |
| 171 | |
| 173 | 172 self.assertTrue(IsOrthancVersionAbove(_LOCAL, 0, 8, 6)) |
| 173 self.assertFalse(IsOrthancVersionAbove(_LOCAL, 0, 8, 7)) | |
| 174 self.assertTrue(IsOrthancVersionAbove(_LOCAL, 0, 7, 6)) | |
| 175 self.assertFalse(IsOrthancVersionAbove(_LOCAL, 0, 9, 6)) | |
| 176 self.assertFalse(IsOrthancVersionAbove(_LOCAL, 1, 8, 6)) | |
| 3 | 177 |
| 178 def test_upload(self): | |
| 173 | 179 self.assertEqual('0', DoGet(_REMOTE, '/statistics')['TotalDiskSize']) |
| 180 self.assertEqual('0', DoGet(_REMOTE, '/statistics')['TotalUncompressedSize']) | |
| 181 | |
| 182 sizeDummyCT = 2472 | |
| 183 sizeOverwrite = 2476 | |
| 184 instance = '66a662ce-7430e543-bad44d47-0dc5a943-ec7a538d' | |
| 185 | |
| 3 | 186 u = UploadInstance(_REMOTE, 'DummyCT.dcm') |
| 183 | 187 self.assertEqual(instance, u['ID']) |
| 3 | 188 self.assertEqual('Success', u['Status']) |
| 173 | 189 |
| 183 | 190 if True: |
| 191 # New test for Orthanc 1.4.3 | |
| 192 self.assertEqual('f2635388-f01d497a-15f7c06b-ad7dba06-c4c599fe', u['ParentSeries']) | |
| 193 self.assertEqual('b9c08539-26f93bde-c81ab0d7-bffaf2cb-a4d0bdd0', u['ParentStudy']) | |
| 194 self.assertEqual('6816cb19-844d5aee-85245eba-28e841e6-2414fae2', u['ParentPatient']) | |
| 195 | |
| 173 | 196 j = int(DoGet(_REMOTE, '/instances/%s/attachments/dicom-as-json/size' % instance)) |
| 197 s = sizeDummyCT + j | |
| 198 self.assertEqual('%d' % s, DoGet(_REMOTE, '/statistics')['TotalDiskSize']) | |
| 199 self.assertEqual('%d' % s, DoGet(_REMOTE, '/statistics')['TotalUncompressedSize']) | |
| 200 | |
| 3 | 201 u = UploadInstance(_REMOTE, 'DummyCT.dcm') |
| 202 self.assertEqual(1, len(DoGet(_REMOTE, '/patients'))) | |
| 203 self.assertEqual(1, len(DoGet(_REMOTE, '/studies'))) | |
| 204 self.assertEqual(1, len(DoGet(_REMOTE, '/series'))) | |
| 205 self.assertEqual(1, len(DoGet(_REMOTE, '/instances'))) | |
| 173 | 206 self.assertEqual('%d' % s, DoGet(_REMOTE, '/statistics')['TotalDiskSize']) |
| 207 self.assertEqual('%d' % s, DoGet(_REMOTE, '/statistics')['TotalUncompressedSize']) | |
| 208 | |
| 209 i = DoGet(_REMOTE, '/instances/%s/simplified-tags' % instance) | |
| 3 | 210 self.assertEqual('20070101', i['StudyDate']) |
| 173 | 211 self.assertEqual('KNIX', i['PatientName']) |
| 212 | |
| 213 if IsOrthancVersionAbove(_REMOTE, 1, 4, 2): | |
| 214 # Overwriting | |
| 215 self.assertEqual('Success', u['Status']) | |
| 216 else: | |
| 217 self.assertEqual('AlreadyStored', u['Status']) | |
| 218 | |
| 219 u = UploadInstance(_REMOTE, 'DummyCT-overwrite.dcm') | |
| 220 self.assertEqual(1, len(DoGet(_REMOTE, '/patients'))) | |
| 221 self.assertEqual(1, len(DoGet(_REMOTE, '/studies'))) | |
| 222 self.assertEqual(1, len(DoGet(_REMOTE, '/series'))) | |
| 223 self.assertEqual(1, len(DoGet(_REMOTE, '/instances'))) | |
| 224 | |
| 225 if IsOrthancVersionAbove(_REMOTE, 1, 4, 2): | |
| 226 # Overwriting | |
| 227 self.assertEqual('Success', u['Status']) | |
| 228 j2 = int(DoGet(_REMOTE, '/instances/%s/attachments/dicom-as-json/size' % instance)) | |
| 229 s2 = sizeOverwrite + j2 | |
| 230 self.assertNotEqual(s, s2) | |
| 231 self.assertNotEqual(j, j2) | |
| 232 self.assertEqual('%d' % s2, DoGet(_REMOTE, '/statistics')['TotalDiskSize']) | |
| 233 self.assertEqual('%d' % s2, DoGet(_REMOTE, '/statistics')['TotalUncompressedSize']) | |
| 234 i = DoGet(_REMOTE, '/instances/%s/simplified-tags' % instance) | |
| 235 self.assertEqual('ANOTHER', i['PatientName']) | |
| 236 else: | |
| 237 self.assertEqual('AlreadyStored', u['Status']) | |
| 238 self.assertEqual('%d' % s, DoGet(_REMOTE, '/statistics')['TotalDiskSize']) | |
| 239 self.assertEqual('%d' % s, DoGet(_REMOTE, '/statistics')['TotalUncompressedSize']) | |
| 3 | 240 |
| 5 | 241 def test_upload_2(self): |
| 3 | 242 i = UploadInstance(_REMOTE, 'DummyCT.dcm')['ID'] |
| 243 instance = DoGet(_REMOTE, '/instances/%s' % i) | |
| 244 self.assertEqual(i, instance['ID']) | |
| 245 self.assertEqual('1.2.840.113619.2.176.2025.1499492.7040.1171286242.109', | |
| 246 instance['MainDicomTags']['SOPInstanceUID']) | |
| 247 | |
| 248 series = DoGet(_REMOTE, '/series/%s' % instance['ParentSeries']) | |
| 249 self.assertEqual('1.2.840.113619.2.176.2025.1499492.7391.1171285944.394', | |
| 250 series['MainDicomTags']['SeriesInstanceUID']) | |
| 251 | |
| 252 study = DoGet(_REMOTE, '/studies/%s' % series['ParentStudy']) | |
| 253 self.assertEqual('1.2.840.113619.2.176.2025.1499492.7391.1171285944.390', | |
| 254 study['MainDicomTags']['StudyInstanceUID']) | |
| 255 | |
| 256 patient = DoGet(_REMOTE, '/patients/%s' % study['ParentPatient']) | |
| 257 self.assertEqual('ozp00SjY2xG', | |
| 258 patient['MainDicomTags']['PatientID']) | |
| 259 | |
| 260 dicom = DoGet(_REMOTE, '/instances/%s/file' % instance['ID']) | |
| 261 self.assertEqual(2472, len(dicom)) | |
| 262 self.assertEqual('3e29b869978b6db4886355a2b1132124', ComputeMD5(dicom)) | |
| 263 self.assertEqual(1, len(DoGet(_REMOTE, '/instances/%s/frames' % i))) | |
| 264 self.assertEqual('TWINOW', DoGet(_REMOTE, '/instances/%s/simplified-tags' % i)['StationName']) | |
| 265 self.assertEqual('TWINOW', DoGet(_REMOTE, '/instances/%s/tags' % i)['0008,1010']['Value']) | |
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266 self.assertEqual('TWINOW', DoGet(_REMOTE, '/instances/%s/tags?simplify' % i)['StationName']) |
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267 self.assertEqual('TWINOW', DoGet(_REMOTE, '/instances/%s/tags?short' % i)['0008,1010']) |
| 3 | 268 |
| 269 | |
| 5 | 270 def test_images(self): |
| 271 i = UploadInstance(_REMOTE, 'Phenix/IM-0001-0001.dcm')['ID'] | |
| 272 self.assertEqual(1, len(DoGet(_REMOTE, '/instances/%s/frames' % i))) | |
| 3 | 273 |
| 5 | 274 im = GetImage(_REMOTE, '/instances/%s/preview' % i) |
| 275 self.assertEqual("L", im.mode) | |
| 276 self.assertEqual(512, im.size[0]) | |
| 277 self.assertEqual(358, im.size[1]) | |
| 278 | |
| 279 im = GetImage(_REMOTE, '/instances/%s/image-uint8' % i) | |
| 280 self.assertEqual("L", im.mode) | |
| 281 self.assertEqual(512, im.size[0]) | |
| 282 self.assertEqual(358, im.size[1]) | |
| 283 | |
| 284 im = GetImage(_REMOTE, '/instances/%s/image-uint16' % i) | |
| 285 self.assertEqual(512, im.size[0]) | |
| 286 self.assertEqual(358, im.size[1]) | |
| 287 | |
| 288 im = GetImage(_REMOTE, '/instances/%s/frames/0/preview' % i) | |
| 289 self.assertEqual("L", im.mode) | |
| 290 self.assertEqual(512, im.size[0]) | |
| 291 self.assertEqual(358, im.size[1]) | |
| 292 | |
| 293 im = GetImage(_REMOTE, '/instances/%s/frames/0/image-uint8' % i) | |
| 294 self.assertEqual("L", im.mode) | |
| 295 self.assertEqual(512, im.size[0]) | |
| 296 self.assertEqual(358, im.size[1]) | |
| 297 | |
| 298 im = GetImage(_REMOTE, '/instances/%s/frames/0/image-uint16' % i) | |
| 299 self.assertEqual(512, im.size[0]) | |
| 300 self.assertEqual(358, im.size[1]) | |
| 64 | 301 |
| 302 # This is Little Endian Explicit | |
| 303 self.assertEqual('1.2.840.10008.1.2.1', DoGet(_REMOTE, '/instances/%s/header?simplify' % i)['TransferSyntaxUID']) | |
| 304 | |
| 6 | 305 |
| 306 def test_hierarchy(self): | |
| 307 UploadFolder(_REMOTE, 'Brainix/Epi') | |
| 308 UploadFolder(_REMOTE, 'Brainix/Flair') | |
| 309 UploadFolder(_REMOTE, 'Knee/T1') | |
| 310 UploadFolder(_REMOTE, 'Knee/T2') | |
| 311 | |
| 312 p = DoGet(_REMOTE, '/patients') | |
| 313 s = DoGet(_REMOTE, '/studies') | |
| 314 t = DoGet(_REMOTE, '/series') | |
| 315 self.assertEqual(2, len(p)) | |
| 316 self.assertEqual(2, len(s)) | |
| 317 self.assertEqual(4, len(t)) | |
| 318 self.assertEqual(94, len(DoGet(_REMOTE, '/instances'))) | |
| 319 | |
| 320 brainixPatient = '16738bc3-e47ed42a-43ce044c-a3414a45-cb069bd0' | |
| 321 brainixStudy = '27f7126f-4f66fb14-03f4081b-f9341db2-53925988' | |
| 322 brainixEpi = '2ac1316d-3e432022-62eabff2-c59f5475-9b1ac3f8' | |
| 323 brainixFlair = '1e2c125c-411b8e86-3f4fe68e-a7584dd3-c6da78f0' | |
| 324 | |
| 325 kneePatient = 'ca29faea-b6a0e17f-067743a1-8b778011-a48b2a17' | |
| 326 kneeStudy = '0a9b3153-2512774b-2d9580de-1fc3dcf6-3bd83918' | |
| 327 kneeT1 = '6de73705-c4e65c1b-9d9ea1b5-cabcd8e7-f15e4285' | |
| 328 kneeT2 = 'bbf7a453-0d34251a-03663b55-46bb31b9-ffd74c59' | |
| 329 | |
| 330 self.assertTrue(brainixPatient in p) | |
| 331 self.assertTrue(kneePatient in p) | |
| 332 self.assertTrue(brainixStudy in s) | |
| 333 self.assertTrue(kneeStudy in s) | |
| 334 self.assertTrue(brainixEpi in t) | |
| 335 self.assertTrue(brainixFlair in t) | |
| 336 self.assertTrue(kneeT1 in t) | |
| 337 self.assertTrue(kneeT2 in t) | |
| 338 | |
| 339 self.assertEqual(44, len(DoGet(_REMOTE, '/patients/%s/instances' % brainixPatient))) | |
| 340 self.assertEqual(2, len(DoGet(_REMOTE, '/patients/%s/series' % brainixPatient))) | |
| 341 self.assertEqual(1, len(DoGet(_REMOTE, '/patients/%s/studies' % brainixPatient))) | |
| 342 | |
| 343 self.assertEqual(50, len(DoGet(_REMOTE, '/patients/%s/instances' % kneePatient))) | |
| 344 self.assertEqual(2, len(DoGet(_REMOTE, '/patients/%s/series' % kneePatient))) | |
| 345 self.assertEqual(1, len(DoGet(_REMOTE, '/patients/%s/studies' % kneePatient))) | |
| 346 | |
| 347 self.assertEqual(2, len(DoGet(_REMOTE, '/studies/%s/series' % brainixStudy))) | |
| 348 self.assertEqual(44, len(DoGet(_REMOTE, '/studies/%s/instances' % brainixStudy))) | |
| 349 | |
| 350 self.assertEqual(2, len(DoGet(_REMOTE, '/studies/%s/series' % kneeStudy))) | |
| 351 self.assertEqual(50, len(DoGet(_REMOTE, '/studies/%s/instances' % kneeStudy))) | |
| 352 | |
| 353 self.assertEqual(22, len(DoGet(_REMOTE, '/series/%s/instances' % brainixEpi))) | |
| 354 self.assertEqual(22, len(DoGet(_REMOTE, '/series/%s/instances' % brainixFlair))) | |
| 355 self.assertEqual(24, len(DoGet(_REMOTE, '/series/%s/instances' % kneeT1))) | |
| 356 self.assertEqual(26, len(DoGet(_REMOTE, '/series/%s/instances' % kneeT2))) | |
| 357 | |
| 358 for patient in p: | |
| 359 for study in DoGet(_REMOTE, '/patients/%s/studies' % patient): | |
| 360 self.assertEqual(patient, study['ParentPatient']) | |
| 361 for series in DoGet(_REMOTE, '/studies/%s/series' % study['ID']): | |
| 362 self.assertEqual(study['ID'], series['ParentStudy']) | |
| 211 | 363 self.assertEqual('Unknown', series['Status']) |
| 6 | 364 for instance in DoGet(_REMOTE, '/series/%s/instances' % series['ID']): |
| 365 self.assertEqual(series['ID'], instance['ParentSeries']) | |
| 366 | |
| 367 self.assertEqual(json.dumps(DoGet(_REMOTE, '/instances/%s/attachments/dicom-as-json/data' % instance['ID'])), | |
| 368 json.dumps(DoGet(_REMOTE, '/instances/%s/tags' % instance['ID']))) | |
| 369 | |
| 370 | |
| 371 r = DoDelete(_REMOTE, "/studies/%s" % brainixStudy)['RemainingAncestor'] | |
| 372 self.assertEqual(1, len(DoGet(_REMOTE, '/patients'))) | |
| 373 self.assertEqual(1, len(DoGet(_REMOTE, '/studies'))) | |
| 374 self.assertEqual(2, len(DoGet(_REMOTE, '/series'))) | |
| 375 self.assertEqual(50, len(DoGet(_REMOTE, '/instances'))) | |
| 376 self.assertEqual(None, r) | |
| 377 | |
| 378 r = DoDelete(_REMOTE, "/series/%s" % kneeT2)['RemainingAncestor'] | |
| 379 self.assertEqual(1, len(DoGet(_REMOTE, '/patients'))) | |
| 380 self.assertEqual(1, len(DoGet(_REMOTE, '/studies'))) | |
| 381 self.assertEqual(1, len(DoGet(_REMOTE, '/series'))) | |
| 382 self.assertEqual(24, len(DoGet(_REMOTE, '/instances'))) | |
| 383 self.assertEqual('Study', r['Type']) | |
| 384 self.assertEqual(kneeStudy, r['ID']) | |
| 385 | |
| 386 r = DoDelete(_REMOTE, "/instances/%s" % DoGet(_REMOTE, '/instances')[0])['RemainingAncestor'] | |
| 387 self.assertEqual(1, len(DoGet(_REMOTE, '/patients'))) | |
| 388 self.assertEqual(1, len(DoGet(_REMOTE, '/studies'))) | |
| 389 self.assertEqual(1, len(DoGet(_REMOTE, '/series'))) | |
| 390 self.assertEqual(23, len(DoGet(_REMOTE, '/instances'))) | |
| 391 self.assertEqual('Series', r['Type']) | |
| 392 self.assertEqual(kneeT1, r['ID']) | |
| 393 | |
| 394 r = DoDelete(_REMOTE, "/patients/%s" % kneePatient)['RemainingAncestor'] | |
| 395 self.assertEqual(0, len(DoGet(_REMOTE, '/patients'))) | |
| 396 self.assertEqual(0, len(DoGet(_REMOTE, '/studies'))) | |
| 397 self.assertEqual(0, len(DoGet(_REMOTE, '/series'))) | |
| 398 self.assertEqual(0, len(DoGet(_REMOTE, '/instances'))) | |
| 399 self.assertEqual(None, r) | |
| 400 | |
| 401 DropOrthanc(_REMOTE) | |
| 402 self.assertEqual('0', DoGet(_REMOTE, '/statistics')['TotalDiskSize']) | |
| 403 self.assertEqual('0', DoGet(_REMOTE, '/statistics')['TotalUncompressedSize']) | |
| 7 | 404 |
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405 def test_delete_cascade(self): |
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406 # make sure deleting the last instance of a study deletes the series, study and patient |
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407 |
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408 self.assertEqual(0, len(DoGet(_REMOTE, '/instances'))) # make sure orthanc is empty when starting the test |
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409 a = UploadInstance(_REMOTE, 'DummyCT.dcm')['ID'] |
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410 self.assertEqual(1, len(DoGet(_REMOTE, '/instances'))) |
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411 self.assertEqual(1, len(DoGet(_REMOTE, '/series'))) |
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412 self.assertEqual(1, len(DoGet(_REMOTE, '/studies'))) |
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413 self.assertEqual(1, len(DoGet(_REMOTE, '/patients'))) |
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414 |
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415 DoDelete(_REMOTE, '/instances/%s' % a) |
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416 |
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417 self.assertEqual(0, len(DoGet(_REMOTE, '/instances'))) |
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418 self.assertEqual(0, len(DoGet(_REMOTE, '/series'))) |
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419 self.assertEqual(0, len(DoGet(_REMOTE, '/studies'))) |
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420 self.assertEqual(0, len(DoGet(_REMOTE, '/patients'))) |
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421 |
| 7 | 422 |
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423 def test_multiframe(self): |
| 7 | 424 i = UploadInstance(_REMOTE, 'Multiframe.dcm')['ID'] |
| 425 self.assertEqual(76, len(DoGet(_REMOTE, '/instances/%s/frames' % i))) | |
| 426 | |
| 427 im = GetImage(_REMOTE, '/instances/%s/frames/0/preview' % i) | |
| 428 self.assertEqual("L", im.mode) | |
| 429 self.assertEqual(512, im.size[0]) | |
| 430 self.assertEqual(512, im.size[1]) | |
| 431 | |
| 432 DoGet(_REMOTE, '/instances/%s/frames/0/image-uint8' % i) | |
| 433 DoGet(_REMOTE, '/instances/%s/frames/0/image-uint16' % i) | |
| 434 DoGet(_REMOTE, '/instances/%s/frames/75/preview' % i) | |
| 435 self.assertRaises(Exception, lambda: DoGet(_REMOTE, '/instances/%s/frames/aaa/preview' % i)) | |
| 436 self.assertRaises(Exception, lambda: DoGet(_REMOTE, '/instances/%s/frames/76/preview' % i)) | |
| 437 | |
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438 |
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439 def test_changes(self): |
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440 # Check emptiness |
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441 c = DoGet(_REMOTE, '/changes') |
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442 self.assertEqual(0, len(c['Changes'])) |
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443 #self.assertEqual(0, c['Last']) # Not true anymore for Orthanc >= 1.5.2 |
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444 self.assertTrue(c['Done']) |
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445 c = DoGet(_REMOTE, '/changes?last') |
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446 self.assertEqual(0, len(c['Changes'])) |
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447 #self.assertEqual(0, c['Last']) # Not true anymore for Orthanc >= 1.5.2 |
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448 self.assertTrue(c['Done']) |
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449 |
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450 # Add 1 instance |
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451 i = UploadInstance(_REMOTE, 'Brainix/Flair/IM-0001-0001.dcm')['ID'] |
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452 c = DoGet(_REMOTE, '/changes') |
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453 begin = c['Last'] |
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454 self.assertEqual(4, len(c['Changes'])) |
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455 self.assertTrue(c['Done']) |
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456 self.assertEqual(c['Changes'][-1]['Seq'], c['Last']) |
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457 |
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458 c = DoGet(_REMOTE, '/changes?last') |
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459 self.assertEqual(1, len(c['Changes'])) |
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460 self.assertEqual(begin, c['Last']) |
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461 self.assertTrue(c['Done']) |
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462 c = DoGet(_REMOTE, '/changes?limit=1&since=' + str(begin - 1)) |
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463 self.assertEqual(1, len(c['Changes'])) |
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464 self.assertEqual(begin, c['Last']) |
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465 self.assertTrue(c['Done']) |
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466 c = DoGet(_REMOTE, '/changes?limit=1&since=' + str(begin - 2)) |
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changeset
|
467 self.assertEqual(1, len(c['Changes'])) |
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changeset
|
468 self.assertEqual(begin - 1, c['Last']) |
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changeset
|
469 self.assertFalse(c['Done']) |
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diff
changeset
|
470 c = DoGet(_REMOTE, '/changes?limit=1&since=' + str(begin - 3)) |
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changeset
|
471 self.assertEqual(1, len(c['Changes'])) |
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diff
changeset
|
472 self.assertEqual(begin - 2, c['Last']) |
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changeset
|
473 self.assertFalse(c['Done']) |
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diff
changeset
|
474 |
|
f8d781d1d267
test_changes, test_archive, test_media_archive
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changeset
|
475 UploadFolder(_REMOTE, 'Knee/T1') |
|
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diff
changeset
|
476 UploadFolder(_REMOTE, 'Knee/T2') |
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diff
changeset
|
477 since = begin |
|
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diff
changeset
|
478 countPatients = 0 |
|
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479 countStudies = 0 |
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changeset
|
480 countSeries = 0 |
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diff
changeset
|
481 countInstances = 0 |
|
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diff
changeset
|
482 completed = 0 |
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parents:
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diff
changeset
|
483 while True: |
|
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changeset
|
484 c = DoGet(_REMOTE, '/changes', { 'since' : since, 'limit' : 3 }) |
|
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diff
changeset
|
485 since = c['Last'] |
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changeset
|
486 for i in c['Changes']: |
|
f8d781d1d267
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changeset
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487 if i['ResourceType'] == 'Instance': |
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changeset
|
488 countInstances += 1 |
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changeset
|
489 if i['ResourceType'] == 'Patient': |
|
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changeset
|
490 countPatients += 1 |
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changeset
|
491 if i['ResourceType'] == 'Study': |
|
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test_changes, test_archive, test_media_archive
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changeset
|
492 countStudies += 1 |
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changeset
|
493 if i['ResourceType'] == 'Series': |
|
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test_changes, test_archive, test_media_archive
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changeset
|
494 countSeries += 1 |
|
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diff
changeset
|
495 if i['ChangeType'] == 'NewInstance': |
|
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changeset
|
496 countInstances += 1 |
|
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changeset
|
497 if i['ChangeType'] == 'NewPatient': |
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changeset
|
498 countPatients += 1 |
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changeset
|
499 if i['ChangeType'] == 'NewStudy': |
|
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test_changes, test_archive, test_media_archive
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changeset
|
500 countStudies += 1 |
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changeset
|
501 if i['ChangeType'] == 'NewSeries': |
|
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test_changes, test_archive, test_media_archive
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changeset
|
502 countSeries += 1 |
|
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test_changes, test_archive, test_media_archive
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changeset
|
503 if i['ChangeType'] == 'CompletedSeries': |
|
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test_changes, test_archive, test_media_archive
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parents:
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diff
changeset
|
504 completed += 1 |
|
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test_changes, test_archive, test_media_archive
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diff
changeset
|
505 self.assertTrue('ID' in i) |
|
f8d781d1d267
test_changes, test_archive, test_media_archive
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diff
changeset
|
506 self.assertTrue('Path' in i) |
|
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parents:
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diff
changeset
|
507 self.assertTrue('Seq' in i) |
|
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test_changes, test_archive, test_media_archive
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changeset
|
508 if c['Done']: |
|
f8d781d1d267
test_changes, test_archive, test_media_archive
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
changeset
|
509 break |
|
f8d781d1d267
test_changes, test_archive, test_media_archive
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
7
diff
changeset
|
510 |
|
f8d781d1d267
test_changes, test_archive, test_media_archive
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diff
changeset
|
511 self.assertEqual(2 * 50, countInstances) |
|
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test_changes, test_archive, test_media_archive
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changeset
|
512 self.assertEqual(2 * 1, countPatients) |
|
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changeset
|
513 self.assertEqual(2 * 1, countStudies) |
|
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changeset
|
514 self.assertEqual(2 * 2, countSeries) |
|
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changeset
|
515 self.assertEqual(0, completed) |
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parents:
7
diff
changeset
|
516 |
|
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parents:
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diff
changeset
|
517 |
|
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changeset
|
518 def test_archive(self): |
|
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changeset
|
519 UploadInstance(_REMOTE, 'Knee/T1/IM-0001-0001.dcm') |
|
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test_changes, test_archive, test_media_archive
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diff
changeset
|
520 UploadInstance(_REMOTE, 'Knee/T2/IM-0001-0001.dcm') |
| 192 | 521 knee = 'ca29faea-b6a0e17f-067743a1-8b778011-a48b2a17' |
| 522 | |
| 523 z = GetArchive(_REMOTE, '/patients/%s/archive' % knee) | |
|
8
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changeset
|
524 self.assertEqual(2, len(z.namelist())) |
|
f8d781d1d267
test_changes, test_archive, test_media_archive
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parents:
7
diff
changeset
|
525 |
|
f8d781d1d267
test_changes, test_archive, test_media_archive
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7
diff
changeset
|
526 z = GetArchive(_REMOTE, '/studies/%s/archive' % DoGet(_REMOTE, '/studies')[0]) |
|
f8d781d1d267
test_changes, test_archive, test_media_archive
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diff
changeset
|
527 self.assertEqual(2, len(z.namelist())) |
|
f8d781d1d267
test_changes, test_archive, test_media_archive
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parents:
7
diff
changeset
|
528 |
|
f8d781d1d267
test_changes, test_archive, test_media_archive
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parents:
7
diff
changeset
|
529 z = GetArchive(_REMOTE, '/series/%s/archive' % DoGet(_REMOTE, '/series')[0]) |
|
f8d781d1d267
test_changes, test_archive, test_media_archive
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7
diff
changeset
|
530 self.assertEqual(1, len(z.namelist())) |
|
f8d781d1d267
test_changes, test_archive, test_media_archive
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parents:
7
diff
changeset
|
531 |
|
f8d781d1d267
test_changes, test_archive, test_media_archive
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
7
diff
changeset
|
532 UploadInstance(_REMOTE, 'Brainix/Flair/IM-0001-0001.dcm') |
| 192 | 533 brainix = '16738bc3-e47ed42a-43ce044c-a3414a45-cb069bd0' |
| 534 | |
| 535 z = GetArchive(_REMOTE, '/patients/%s/archive' % knee) | |
|
8
f8d781d1d267
test_changes, test_archive, test_media_archive
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
7
diff
changeset
|
536 self.assertEqual(2, len(z.namelist())) |
| 192 | 537 |
| 538 z = PostArchive(_REMOTE, '/tools/create-archive', { | |
| 539 'Resources' : [ brainix, knee ] | |
| 540 }) | |
| 541 self.assertEqual(3, len(z.namelist())) | |
| 542 | |
|
8
f8d781d1d267
test_changes, test_archive, test_media_archive
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
7
diff
changeset
|
543 |
|
f8d781d1d267
test_changes, test_archive, test_media_archive
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
7
diff
changeset
|
544 def test_media_archive(self): |
|
f8d781d1d267
test_changes, test_archive, test_media_archive
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
7
diff
changeset
|
545 UploadInstance(_REMOTE, 'Knee/T1/IM-0001-0001.dcm') |
|
f8d781d1d267
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parents:
7
diff
changeset
|
546 UploadInstance(_REMOTE, 'Knee/T2/IM-0001-0001.dcm') |
|
f8d781d1d267
test_changes, test_archive, test_media_archive
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
7
diff
changeset
|
547 |
|
f8d781d1d267
test_changes, test_archive, test_media_archive
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
7
diff
changeset
|
548 z = GetArchive(_REMOTE, '/patients/%s/media' % DoGet(_REMOTE, '/patients')[0]) |
|
f8d781d1d267
test_changes, test_archive, test_media_archive
Sebastien Jodogne <s.jodogne@gmail.com>
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7
diff
changeset
|
549 self.assertEqual(3, len(z.namelist())) |
|
f8d781d1d267
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parents:
7
diff
changeset
|
550 self.assertTrue('IMAGES/IM0' in z.namelist()) |
|
f8d781d1d267
test_changes, test_archive, test_media_archive
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
7
diff
changeset
|
551 self.assertTrue('IMAGES/IM1' in z.namelist()) |
|
f8d781d1d267
test_changes, test_archive, test_media_archive
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
7
diff
changeset
|
552 self.assertTrue('DICOMDIR' in z.namelist()) |
|
f8d781d1d267
test_changes, test_archive, test_media_archive
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
7
diff
changeset
|
553 |
|
f8d781d1d267
test_changes, test_archive, test_media_archive
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
7
diff
changeset
|
554 try: |
|
f8d781d1d267
test_changes, test_archive, test_media_archive
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
7
diff
changeset
|
555 os.remove('/tmp/DICOMDIR') |
|
f8d781d1d267
test_changes, test_archive, test_media_archive
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
7
diff
changeset
|
556 except: |
|
f8d781d1d267
test_changes, test_archive, test_media_archive
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
7
diff
changeset
|
557 # The file does not exist |
|
f8d781d1d267
test_changes, test_archive, test_media_archive
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
7
diff
changeset
|
558 pass |
|
f8d781d1d267
test_changes, test_archive, test_media_archive
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
7
diff
changeset
|
559 |
|
f8d781d1d267
test_changes, test_archive, test_media_archive
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
7
diff
changeset
|
560 z.extract('DICOMDIR', '/tmp') |
| 45 | 561 a = subprocess.check_output([ FindExecutable('dciodvfy'), '/tmp/DICOMDIR' ], |
|
8
f8d781d1d267
test_changes, test_archive, test_media_archive
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
7
diff
changeset
|
562 stderr = subprocess.STDOUT).split('\n') |
|
f8d781d1d267
test_changes, test_archive, test_media_archive
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
7
diff
changeset
|
563 self.assertEqual(3, len(a)) |
|
f8d781d1d267
test_changes, test_archive, test_media_archive
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
7
diff
changeset
|
564 self.assertTrue(a[0].startswith('Warning')) |
|
f8d781d1d267
test_changes, test_archive, test_media_archive
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
7
diff
changeset
|
565 self.assertEqual('BasicDirectory', a[1]) |
|
f8d781d1d267
test_changes, test_archive, test_media_archive
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parents:
7
diff
changeset
|
566 self.assertEqual('', a[2]) |
|
f8d781d1d267
test_changes, test_archive, test_media_archive
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
7
diff
changeset
|
567 |
| 45 | 568 a = subprocess.check_output([ FindExecutable('dcentvfy'), '/tmp/DICOMDIR' ], |
|
8
f8d781d1d267
test_changes, test_archive, test_media_archive
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
7
diff
changeset
|
569 stderr = subprocess.STDOUT).split('\n') |
|
f8d781d1d267
test_changes, test_archive, test_media_archive
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
7
diff
changeset
|
570 self.assertEqual(1, len(a)) |
|
f8d781d1d267
test_changes, test_archive, test_media_archive
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
7
diff
changeset
|
571 self.assertEqual('', a[0]) |
|
f8d781d1d267
test_changes, test_archive, test_media_archive
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
7
diff
changeset
|
572 |
| 45 | 573 a = subprocess.check_output([ FindExecutable('dcm2xml'), '/tmp/DICOMDIR' ]) |
|
8
f8d781d1d267
test_changes, test_archive, test_media_archive
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
7
diff
changeset
|
574 self.assertTrue(re.search('1.3.46.670589.11.17521.5.0.3124.2008081908590448738', a) != None) |
|
f8d781d1d267
test_changes, test_archive, test_media_archive
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
7
diff
changeset
|
575 self.assertTrue(re.search('1.3.46.670589.11.17521.5.0.3124.2008081909113806560', a) != None) |
|
f8d781d1d267
test_changes, test_archive, test_media_archive
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
7
diff
changeset
|
576 |
|
f8d781d1d267
test_changes, test_archive, test_media_archive
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
7
diff
changeset
|
577 os.remove('/tmp/DICOMDIR') |
| 10 | 578 |
| 579 | |
| 580 def test_protection(self): | |
| 581 UploadInstance(_REMOTE, 'Knee/T1/IM-0001-0001.dcm') | |
| 582 UploadInstance(_REMOTE, 'Brainix/Flair/IM-0001-0001.dcm') | |
| 583 self.assertEqual(2, len(DoGet(_REMOTE, '/patients'))) | |
| 584 a = DoGet(_REMOTE, '/patients')[0] | |
| 585 b = DoGet(_REMOTE, '/patients')[1] | |
| 586 self.assertEqual(0, DoGet(_REMOTE, '/patients/%s/protected' % a)) | |
| 587 DoPut(_REMOTE, '/patients/%s/protected' % a, '0', 'text/plain') | |
| 588 self.assertEqual(0, DoGet(_REMOTE, '/patients/%s/protected' % a)) | |
| 589 DoPut(_REMOTE, '/patients/%s/protected' % a, '1', 'text/plain') | |
| 590 self.assertEqual(1, DoGet(_REMOTE, '/patients/%s/protected' % a)) | |
| 591 DoPut(_REMOTE, '/patients/%s/protected' % a, '0', 'text/plain') | |
| 592 self.assertEqual(0, DoGet(_REMOTE, '/patients/%s/protected' % a)) | |
| 593 | |
| 594 | |
| 12 | 595 def test_raw_tags(self): |
| 10 | 596 i = UploadInstance(_REMOTE, 'PrivateTags.dcm')['ID'] |
| 597 | |
| 598 dicom = DoGet(_REMOTE, '/instances/%s/file' % i) | |
| 599 self.assertEqual('1a7c56cb02d6e742cc9c856a8ac182e3', ComputeMD5(dicom)) | |
| 600 | |
| 601 s = '/instances/%s/content/' % i | |
| 602 | |
| 603 self.assertEqual('LOGIQBOOK', DoGet(_REMOTE, s + '0008-1010').strip()) | |
| 604 self.assertRaises(Exception, lambda: DoGet(_REMOTE, s + '0008-1011')) | |
| 605 | |
| 606 self.assertEqual('Abdomen', DoGet(_REMOTE, s + '7fe1-1001/0/7fe1-1008/0/7fe1-1057').strip()) | |
| 607 self.assertEqual('cla_3c', DoGet(_REMOTE, s + '7fe1-1001/0/7fe1-1008/8/7fe1-1057').strip()) | |
| 608 | |
| 609 UploadInstance(_REMOTE, 'Brainix/Epi/IM-0001-0001.dcm') | |
| 610 UploadInstance(_REMOTE, 'Brainix/Flair/IM-0001-0001.dcm') | |
| 611 UploadInstance(_REMOTE, 'Knee/T1/IM-0001-0001.dcm') | |
| 612 UploadInstance(_REMOTE, 'Knee/T2/IM-0001-0001.dcm') | |
| 613 | |
| 614 for i in DoGet(_REMOTE, '/instances'): | |
| 615 aid = DoGet(_REMOTE, '/instances/%s' % i)['MainDicomTags']['SOPInstanceUID'] | |
| 616 self.assertEqual(aid, DoGet(_REMOTE, '/instances/%s/content/0008-0018' % i).replace(chr(0), '')) | |
| 617 | |
| 618 | |
| 619 def test_raw_tags_mdn(self): | |
| 620 # Bug reported by Cyril Paulus | |
| 621 i = UploadInstance(_REMOTE, 'PrivateMDNTags.dcm')['ID'] | |
| 622 self.assertAlmostEqual(0.000027, DoGet(_REMOTE, '/instances/%s/content/7053-1000' % i)) | |
| 623 | |
| 624 | |
| 625 def test_modify_instance(self): | |
| 626 i = UploadInstance(_REMOTE, 'PrivateTags.dcm')['ID'] | |
| 627 modified = DoPost(_REMOTE, '/instances/%s/modify' % i, | |
| 628 json.dumps({ | |
| 629 "Replace" : { | |
| 630 "PatientName" : "hello", | |
| 631 #"PatientID" : "world" | |
| 632 }, | |
| 633 "Remove" : [ "StationName" ], | |
|
118
a954c535fef6
test_bitbucket_issue_55
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
117
diff
changeset
|
634 "RemovePrivateTags" : True |
| 10 | 635 }), |
| 636 'application/json') | |
| 637 j = DoPost(_REMOTE, '/instances', modified, 'application/dicom')['ID'] | |
| 638 | |
| 639 self.assertNotEqual('hello', DoGet(_REMOTE, '/instances/%s/content/0010-0010' % i).strip()) | |
| 640 #self.assertNotEqual('world', DoGet(_REMOTE, '/instances/%s/content/0010-0020' % i).strip()) | |
| 83 | 641 self.assertEqual('LOGIQBOOK', DoGet(_REMOTE, '/instances/%s/content/0008-1010' % i).strip()) |
| 10 | 642 DoGet(_REMOTE, '/instances/%s/content/6003-1010' % i) # Some private tag |
| 643 | |
| 644 self.assertEqual('hello', DoGet(_REMOTE, '/instances/%s/content/0010-0010' % j).strip()) | |
| 645 #self.assertEqual('world', DoGet(_REMOTE, '/instances/%s/content/0010-0020' % j).strip()) | |
| 646 self.assertRaises(Exception, lambda: DoGet(_REMOTE, '/instances/%s/content/0008-1010' % j)) | |
| 647 self.assertRaises(Exception, lambda: DoGet(_REMOTE, '/instances/%s/content/6003-1010' % j)) | |
| 648 | |
| 649 | |
| 650 def test_modify_series(self): | |
| 651 # Upload 4 images from the same series | |
| 652 for i in range(4): | |
| 653 UploadInstance(_REMOTE, 'Brainix/Epi/IM-0001-000%d.dcm' % (i + 1)) | |
| 654 | |
| 655 origSeries = DoGet(_REMOTE, '/series')[0] | |
| 656 newSeries = DoPost(_REMOTE, '/series/%s/modify' % origSeries, | |
| 657 '{"Replace":{"PatientName":"Jodogne"}}', | |
| 658 'application/json')['ID'] | |
| 659 | |
| 660 self.assertEqual(origSeries, DoGet(_REMOTE, '/series/%s' % newSeries)['ModifiedFrom']) | |
| 661 instances = DoGet(_REMOTE, '/series/%s' % newSeries)['Instances'] | |
| 662 self.assertEqual(4, len(instances)) | |
| 663 for i in instances: | |
| 664 j = DoGet(_REMOTE, '/instances/%s' % i)['ModifiedFrom'] | |
| 665 self.assertEqual(newSeries, DoGet(_REMOTE, '/instances/%s' % i)['ParentSeries']) | |
| 666 self.assertEqual(origSeries, DoGet(_REMOTE, '/instances/%s' % j)['ParentSeries']) | |
| 667 | |
| 668 self.assertEqual('Jodogne', DoGet(_REMOTE, '/instances/%s/content/0010-0010' % i).strip()) | |
| 669 self.assertNotEqual('Jodogne', DoGet(_REMOTE, '/instances/%s/content/0010-0010' % j).strip()) | |
| 670 | |
| 671 | |
| 672 def test_modify_study(self): | |
| 673 # Upload 4 images from the 2 series of the same study | |
| 674 for i in range(4): | |
| 675 UploadInstance(_REMOTE, 'Brainix/Flair/IM-0001-000%d.dcm' % (i + 1)) | |
| 676 UploadInstance(_REMOTE, 'Brainix/Epi/IM-0001-000%d.dcm' % (i + 1)) | |
| 677 | |
| 678 origStudy = DoGet(_REMOTE, '/studies')[0] | |
| 679 newStudy = DoPost(_REMOTE, '/studies/%s/modify' % origStudy, | |
| 680 '{"Replace":{"PatientName":"Jodogne"}}', | |
| 681 'application/json')['ID'] | |
| 682 | |
| 683 self.assertEqual(origStudy, DoGet(_REMOTE, '/studies/%s' % newStudy)['ModifiedFrom']) | |
| 684 series = DoGet(_REMOTE, '/studies/%s' % newStudy)['Series'] | |
| 685 self.assertEqual(2, len(series)) | |
| 686 for s in series: | |
| 687 ss = DoGet(_REMOTE, '/series/%s' % s)['ModifiedFrom'] | |
| 688 self.assertEqual(newStudy, DoGet(_REMOTE, '/series/%s' % s)['ParentStudy']) | |
| 689 self.assertEqual(origStudy, DoGet(_REMOTE, '/series/%s' % ss)['ParentStudy']) | |
| 690 | |
| 691 instances = DoGet(_REMOTE, '/series/%s' % s)['Instances'] | |
| 692 for i in instances: | |
| 693 j = DoGet(_REMOTE, '/instances/%s' % i)['ModifiedFrom'] | |
| 694 self.assertEqual(s, DoGet(_REMOTE, '/instances/%s' % i)['ParentSeries']) | |
| 695 self.assertEqual(ss, DoGet(_REMOTE, '/instances/%s' % j)['ParentSeries']) | |
| 696 | |
| 697 self.assertEqual('Jodogne', DoGet(_REMOTE, '/instances/%s/content/0010-0010' % i).strip()) | |
| 698 self.assertNotEqual('Jodogne', DoGet(_REMOTE, '/instances/%s/content/0010-0010' % j).strip()) | |
| 699 | |
| 700 | |
| 701 def test_anonymize_series(self): | |
| 702 # Upload 4 images from the same series | |
| 703 for i in range(4): | |
| 704 UploadInstance(_REMOTE, 'Brainix/Epi/IM-0001-000%d.dcm' % (i + 1)) | |
| 705 | |
| 706 origSeries = DoGet(_REMOTE, '/series')[0] | |
| 707 newSeries = DoPost(_REMOTE, '/series/%s/anonymize' % origSeries, | |
| 708 '{}', | |
| 709 'application/json')['ID'] | |
| 710 | |
| 711 self.assertEqual(origSeries, DoGet(_REMOTE, '/series/%s' % newSeries)['AnonymizedFrom']) | |
| 712 instances = DoGet(_REMOTE, '/series/%s' % newSeries)['Instances'] | |
| 713 self.assertEqual(4, len(instances)) | |
| 714 for i in instances: | |
| 715 j = DoGet(_REMOTE, '/instances/%s' % i)['AnonymizedFrom'] | |
| 716 self.assertEqual(newSeries, DoGet(_REMOTE, '/instances/%s' % i)['ParentSeries']) | |
| 717 self.assertEqual(origSeries, DoGet(_REMOTE, '/instances/%s' % j)['ParentSeries']) | |
| 718 | |
| 719 DoGet(_REMOTE, '/instances/%s/content/0008-1010' % j) | |
| 720 self.assertRaises(Exception, lambda: DoGet(_REMOTE, '/instances/%s/content/0008-1010' % i)) | |
| 721 | |
| 722 | |
| 723 def test_anonymize_study(self): | |
| 724 # Upload 4 images from the 2 series of the same study | |
| 725 for i in range(4): | |
| 726 UploadInstance(_REMOTE, 'Brainix/Flair/IM-0001-000%d.dcm' % (i + 1)) | |
| 727 UploadInstance(_REMOTE, 'Brainix/Epi/IM-0001-000%d.dcm' % (i + 1)) | |
| 728 | |
| 729 origStudy = DoGet(_REMOTE, '/studies')[0] | |
| 730 newStudy = DoPost(_REMOTE,'/studies/%s/anonymize' % origStudy, | |
| 731 '{"Replace":{"PatientName":"Jodogne"}}', | |
| 732 'application/json')['ID'] | |
| 733 | |
| 734 self.assertEqual(origStudy, DoGet(_REMOTE, '/studies/%s' % newStudy)['AnonymizedFrom']) | |
| 735 series = DoGet(_REMOTE, '/studies/%s' % newStudy)['Series'] | |
| 736 self.assertEqual(2, len(series)) | |
| 737 for s in series: | |
| 738 ss = DoGet(_REMOTE, '/series/%s' % s)['AnonymizedFrom'] | |
| 739 self.assertEqual(newStudy, DoGet(_REMOTE, '/series/%s' % s)['ParentStudy']) | |
| 740 self.assertEqual(origStudy, DoGet(_REMOTE, '/series/%s' % ss)['ParentStudy']) | |
| 741 | |
| 742 instances = DoGet(_REMOTE, '/series/%s' % s)['Instances'] | |
| 743 for i in instances: | |
| 744 j = DoGet(_REMOTE, '/instances/%s' % i)['AnonymizedFrom'] | |
| 745 self.assertEqual(s, DoGet(_REMOTE, '/instances/%s' % i)['ParentSeries']) | |
| 746 self.assertEqual(ss, DoGet(_REMOTE, '/instances/%s' % j)['ParentSeries']) | |
| 747 | |
| 748 self.assertEqual('Jodogne', DoGet(_REMOTE, '/instances/%s/content/0010-0010' % i).strip()) | |
| 749 self.assertNotEqual('Jodogne', DoGet(_REMOTE, '/instances/%s/content/0010-0010' % j).strip()) | |
| 11 | 750 |
| 751 | |
| 752 | |
| 753 def test_storescu(self): | |
| 754 # Check emptiness | |
| 755 e = DoGet(_REMOTE, '/exports') | |
| 756 self.assertEqual(0, len(e['Exports'])) | |
| 757 self.assertEqual(0, e['Last']) | |
| 758 self.assertTrue(e['Done']) | |
| 759 e = DoGet(_REMOTE, '/exports?last') | |
| 760 self.assertEqual(0, len(e['Exports'])) | |
| 761 self.assertEqual(0, e['Last']) | |
| 762 self.assertTrue(e['Done']) | |
| 763 | |
| 764 # Add 1 instance | |
| 765 i = UploadInstance(_REMOTE, 'DummyCT.dcm')['ID'] | |
| 766 self.assertEqual(0, len(DoGet(_LOCAL, '/patients'))) | |
| 767 | |
| 768 # Export the instance | |
| 769 j = DoPost(_REMOTE, '/modalities/orthanctest/store', str(i), 'text/plain') # instance | |
| 770 self.assertEqual(1, len(DoGet(_LOCAL, '/patients'))) | |
| 771 self.assertEqual(1, len(DoGet(_LOCAL, '/studies'))) | |
| 772 self.assertEqual(1, len(DoGet(_LOCAL, '/series'))) | |
| 773 self.assertEqual(1, len(DoGet(_LOCAL, '/instances'))) | |
| 774 | |
| 775 e = DoGet(_REMOTE, '/exports') | |
| 776 self.assertEqual(1, len(e['Exports'])) | |
| 777 self.assertTrue(e['Done']) | |
| 778 self.assertEqual(e['Exports'][-1]['Seq'], e['Last']) | |
| 779 e = DoGet(_REMOTE, '/exports?limit=1') | |
| 780 self.assertEqual(1, len(e['Exports'])) | |
| 781 self.assertTrue(e['Done']) | |
| 782 self.assertEqual(e['Exports'][-1]['Seq'], e['Last']) | |
| 783 e = DoGet(_REMOTE, '/exports?last') | |
| 784 self.assertEqual(1, len(e['Exports'])) | |
| 785 self.assertTrue(e['Done']) | |
| 786 self.assertEqual(e['Exports'][-1]['Seq'], e['Last']) | |
| 787 seqInstance = e['Last'] | |
| 788 | |
| 789 # Export the series | |
| 790 j = DoPost(_REMOTE, '/modalities/orthanctest/store', 'f2635388-f01d497a-15f7c06b-ad7dba06-c4c599fe', 'text/plain') | |
| 791 | |
| 792 e = DoGet(_REMOTE, '/exports') | |
| 793 self.assertEqual(2, len(e['Exports'])) | |
| 794 self.assertTrue(e['Done']) | |
| 795 self.assertEqual(e['Exports'][-1]['Seq'], e['Last']) | |
| 796 seqSeries = e['Last'] | |
| 797 self.assertNotEqual(seqInstance, seqSeries) | |
| 798 e = DoGet(_REMOTE, '/exports?limit=1&since=0') | |
| 799 self.assertEqual(1, len(e['Exports'])) | |
| 800 self.assertFalse(e['Done']) | |
| 801 self.assertEqual(e['Exports'][-1]['Seq'], seqInstance) | |
| 802 e = DoGet(_REMOTE, '/exports?limit=1&since=' + str(seqInstance)) | |
| 803 self.assertEqual(1, len(e['Exports'])) | |
| 804 self.assertTrue(e['Done']) | |
| 805 self.assertEqual(e['Exports'][-1]['Seq'], seqSeries) | |
| 806 e = DoGet(_REMOTE, '/exports?last') | |
| 807 self.assertEqual(1, len(e['Exports'])) | |
| 808 self.assertTrue(e['Done']) | |
| 809 self.assertEqual(e['Exports'][-1]['Seq'], seqSeries) | |
| 810 | |
| 811 # Export the study | |
| 812 j = DoPost(_REMOTE, '/modalities/orthanctest/store', 'b9c08539-26f93bde-c81ab0d7-bffaf2cb-a4d0bdd0', 'text/plain') | |
| 813 seqStudy = DoGet(_REMOTE, '/exports')['Last'] | |
| 814 | |
| 815 # Export the patient | |
| 816 j = DoPost(_REMOTE, '/modalities/orthanctest/store', '6816cb19-844d5aee-85245eba-28e841e6-2414fae2', 'text/plain') | |
| 817 self.assertEqual(1, len(DoGet(_LOCAL, '/patients'))) | |
| 818 self.assertEqual(1, len(DoGet(_LOCAL, '/studies'))) | |
| 819 self.assertEqual(1, len(DoGet(_LOCAL, '/series'))) | |
| 820 self.assertEqual(1, len(DoGet(_LOCAL, '/instances'))) | |
| 821 | |
| 822 e = DoGet(_REMOTE, '/exports') | |
| 823 self.assertEqual(4, len(e['Exports'])) | |
| 824 self.assertTrue(e['Done']) | |
| 825 self.assertEqual(e['Exports'][-1]['Seq'], e['Last']) | |
| 826 seqPatient = e['Last'] | |
| 827 self.assertNotEqual(seqInstance, seqSeries) | |
| 828 self.assertNotEqual(seqSeries, seqStudy) | |
| 829 self.assertNotEqual(seqStudy, seqPatient) | |
| 830 self.assertTrue(seqInstance < seqSeries) | |
| 831 self.assertTrue(seqSeries < seqStudy) | |
| 832 self.assertTrue(seqStudy < seqPatient) | |
| 833 e = DoGet(_REMOTE, '/exports?limit=1&since=0') | |
| 834 self.assertEqual(1, len(e['Exports'])) | |
| 835 self.assertFalse(e['Done']) | |
| 836 self.assertEqual(e['Exports'][-1]['Seq'], seqInstance) | |
| 837 e = DoGet(_REMOTE, '/exports?limit=1&since=' + str(seqInstance)) | |
| 838 self.assertEqual(1, len(e['Exports'])) | |
| 839 self.assertFalse(e['Done']) | |
| 840 self.assertEqual(e['Exports'][-1]['Seq'], seqSeries) | |
| 841 e = DoGet(_REMOTE, '/exports?limit=1&since=' + str(seqSeries)) | |
| 842 self.assertEqual(1, len(e['Exports'])) | |
| 843 self.assertFalse(e['Done']) | |
| 844 self.assertEqual(e['Exports'][-1]['Seq'], seqStudy) | |
| 845 e = DoGet(_REMOTE, '/exports?limit=1&since=' + str(seqStudy)) | |
| 846 self.assertEqual(1, len(e['Exports'])) | |
| 847 self.assertTrue(e['Done']) | |
| 848 self.assertEqual(e['Exports'][-1]['Seq'], seqPatient) | |
| 849 e = DoGet(_REMOTE, '/exports?last') | |
| 850 self.assertEqual(1, len(e['Exports'])) | |
| 851 self.assertTrue(e['Done']) | |
| 852 self.assertEqual(e['Exports'][-1]['Seq'], seqPatient) | |
| 853 | |
| 854 | |
| 855 # Check the content of the logged information | |
| 856 e = DoGet(_REMOTE, '/exports')['Exports'] | |
| 857 | |
| 858 if 'PatientID' in e[0]: | |
| 859 # Since Orthanc 0.8.6 | |
| 860 patient = 'PatientID' | |
| 861 study = 'StudyInstanceUID' | |
| 862 series = 'SeriesInstanceUID' | |
| 863 instance = 'SOPInstanceUID' | |
| 864 else: | |
| 865 # Up to Orthanc 0.8.5 | |
| 866 patient = 'PatientId' | |
| 867 study = 'StudyInstanceUid' | |
| 868 series = 'SeriesInstanceUid' | |
| 869 instance = 'SopInstanceUid' | |
| 870 | |
| 871 for k in range(4): | |
| 872 self.assertTrue('Date' in e[k]) | |
| 873 self.assertTrue('Seq' in e[k]) | |
| 874 self.assertEqual('orthanctest', e[k]['RemoteModality']) | |
| 875 | |
| 876 self.assertEqual(10, len(e[0])) | |
| 877 self.assertEqual('Instance', e[0]['ResourceType']) | |
| 878 self.assertEqual('66a662ce-7430e543-bad44d47-0dc5a943-ec7a538d', e[0]['ID']) | |
| 879 self.assertEqual('/instances/66a662ce-7430e543-bad44d47-0dc5a943-ec7a538d', e[0]['Path']) | |
| 880 self.assertEqual('1.2.840.113619.2.176.2025.1499492.7040.1171286242.109', e[0][instance]) | |
| 881 self.assertEqual('1.2.840.113619.2.176.2025.1499492.7391.1171285944.394', e[0][series]) | |
| 882 self.assertEqual('1.2.840.113619.2.176.2025.1499492.7391.1171285944.390', e[0][study]) | |
| 883 self.assertEqual('ozp00SjY2xG', e[0][patient]) | |
| 884 | |
| 885 self.assertEqual(9, len(e[1])) | |
| 886 self.assertEqual('Series', e[1]['ResourceType']) | |
| 887 self.assertEqual('f2635388-f01d497a-15f7c06b-ad7dba06-c4c599fe', e[1]['ID']) | |
| 888 self.assertEqual('/series/f2635388-f01d497a-15f7c06b-ad7dba06-c4c599fe', e[1]['Path']) | |
| 889 self.assertEqual('1.2.840.113619.2.176.2025.1499492.7391.1171285944.394', e[1][series]) | |
| 890 self.assertEqual('1.2.840.113619.2.176.2025.1499492.7391.1171285944.390', e[1][study]) | |
| 891 self.assertEqual('ozp00SjY2xG', e[1][patient]) | |
| 892 | |
| 893 self.assertEqual(8, len(e[2])) | |
| 894 self.assertEqual('Study', e[2]['ResourceType']) | |
| 895 self.assertEqual('b9c08539-26f93bde-c81ab0d7-bffaf2cb-a4d0bdd0', e[2]['ID']) | |
| 896 self.assertEqual('/studies/b9c08539-26f93bde-c81ab0d7-bffaf2cb-a4d0bdd0', e[2]['Path']) | |
| 897 self.assertEqual('1.2.840.113619.2.176.2025.1499492.7391.1171285944.390', e[2][study]) | |
| 898 self.assertEqual('ozp00SjY2xG', e[2][patient]) | |
| 899 | |
| 900 self.assertEqual(7, len(e[3])) | |
| 901 self.assertEqual('Patient', e[3]['ResourceType']) | |
| 902 self.assertEqual('6816cb19-844d5aee-85245eba-28e841e6-2414fae2', e[3]['ID']) | |
| 903 self.assertEqual('/patients/6816cb19-844d5aee-85245eba-28e841e6-2414fae2', e[3]['Path']) | |
| 904 self.assertEqual('ozp00SjY2xG', e[3][patient]) | |
| 905 | |
| 906 DropOrthanc(_REMOTE) | |
| 907 self.assertEqual(0, len(DoGet(_REMOTE, '/exports')['Exports'])) | |
| 908 | |
| 909 | |
| 910 def test_store_peer(self): | |
| 911 self.assertEqual(0, len(DoGet(_LOCAL, '/exports')['Exports'])) | |
| 912 self.assertEqual(0, len(DoGet(_REMOTE, '/exports')['Exports'])) | |
| 913 | |
| 914 i = UploadInstance(_REMOTE, 'DummyCT.dcm')['ID'] | |
| 915 self.assertEqual(0, len(DoGet(_LOCAL, '/patients'))) | |
| 916 self.assertEqual(1, len(DoGet(_REMOTE, '/patients'))) | |
| 917 | |
| 918 j = DoPost(_REMOTE, '/peers/peer/store', str(i), 'text/plain') | |
| 919 self.assertEqual(1, len(DoGet(_LOCAL, '/patients'))) | |
| 920 self.assertEqual(1, len(DoGet(_REMOTE, '/patients'))) | |
| 921 | |
| 922 self.assertEqual(1, len(DoGet(_REMOTE, '/exports')['Exports'])) | |
| 923 | |
| 924 DropOrthanc(_REMOTE) | |
| 925 self.assertEqual(0, len(DoGet(_REMOTE, '/exports')['Exports'])) | |
| 926 | |
| 927 | |
| 928 def test_bulk_storescu(self): | |
| 929 self.assertEqual(0, len(DoGet(_LOCAL, '/patients'))) | |
| 930 | |
| 931 a = UploadInstance(_REMOTE, 'Knee/T1/IM-0001-0001.dcm') | |
| 932 b = UploadInstance(_REMOTE, 'Knee/T2/IM-0001-0001.dcm') | |
| 933 | |
| 934 j = DoPost(_REMOTE, '/modalities/orthanctest/store', [ a['ID'], b['ID'] ], 'application/json') | |
| 935 self.assertEqual(2, len(DoGet(_LOCAL, '/instances'))) | |
| 936 | |
| 937 DropOrthanc(_LOCAL) | |
| 938 | |
| 939 # Send using patient's UUID | |
| 940 self.assertEqual(0, len(DoGet(_LOCAL, '/instances'))) | |
| 941 j = DoPost(_REMOTE, '/modalities/orthanctest/store', | |
| 942 [ 'ca29faea-b6a0e17f-067743a1-8b778011-a48b2a17' ], 'application/json') | |
| 943 self.assertEqual(2, len(DoGet(_LOCAL, '/instances'))) | |
| 944 | |
| 945 | |
| 946 def test_color(self): | |
| 947 i = UploadInstance(_REMOTE, 'ColorTestMalaterre.dcm')['ID'] | |
| 948 im = GetImage(_REMOTE, '/instances/%s/preview' % i) | |
| 949 self.assertEqual("RGB", im.mode) | |
| 950 self.assertEqual(41, im.size[0]) | |
| 951 self.assertEqual(41, im.size[1]) | |
| 952 | |
| 953 # http://effbot.org/zone/pil-comparing-images.htm | |
| 13 | 954 truth = Image.open(GetDatabasePath('ColorTestMalaterre.png')) |
| 11 | 955 self.assertTrue(ImageChops.difference(im, truth).getbbox() is None) |
| 956 | |
| 957 | |
| 12 | 958 def test_faking_ruby_put(self): |
| 959 UploadInstance(_REMOTE, 'Knee/T1/IM-0001-0001.dcm') | |
| 960 UploadInstance(_REMOTE, 'Brainix/Flair/IM-0001-0001.dcm') | |
| 961 self.assertEqual(2, len(DoGet(_REMOTE, '/patients'))) | |
| 962 a = DoGet(_REMOTE, '/patients')[0] | |
| 963 b = DoGet(_REMOTE, '/patients')[1] | |
| 964 self.assertEqual(0, DoGet(_REMOTE, '/patients/%s/protected' % a)) | |
| 965 DoGet(_REMOTE, '/patients/%s/protected' % a, data = { '_method' : 'PUT' }, body = '0') | |
| 966 self.assertEqual(0, DoGet(_REMOTE, '/patients/%s/protected' % a)) | |
| 967 DoGet(_REMOTE, '/patients/%s/protected' % a, data = { '_method' : 'PUT' }, body = '1') | |
| 968 self.assertEqual(1, DoGet(_REMOTE, '/patients/%s/protected' % a)) | |
| 969 DoGet(_REMOTE, '/patients/%s/protected' % a, data = { '_method' : 'PUT' }, body = '0') | |
| 970 self.assertEqual(0, DoGet(_REMOTE, '/patients/%s/protected' % a)) | |
| 971 | |
| 972 | |
| 973 def test_faking_ruby_delete(self): | |
| 974 UploadInstance(_REMOTE, 'Knee/T1/IM-0001-0001.dcm') | |
| 975 UploadInstance(_REMOTE, 'Brainix/Flair/IM-0001-0001.dcm') | |
| 976 self.assertEqual(2, len(DoGet(_REMOTE, '/patients'))) | |
| 977 a = DoGet(_REMOTE, '/patients')[0] | |
| 978 b = DoGet(_REMOTE, '/patients')[1] | |
| 979 DoGet(_REMOTE, '/patients/%s' % a, data = { '_method' : 'DELETE' }) | |
| 980 self.assertEqual(1, len(DoGet(_REMOTE, '/patients'))) | |
| 981 DoGet(_REMOTE, '/patients/%s' % b, data = { '_method' : 'DELETE' }) | |
| 982 self.assertEqual(0, len(DoGet(_REMOTE, '/patients'))) | |
| 983 | |
| 984 | |
| 985 def test_faking_google_put(self): | |
| 986 UploadInstance(_REMOTE, 'Knee/T1/IM-0001-0001.dcm') | |
| 987 UploadInstance(_REMOTE, 'Brainix/Flair/IM-0001-0001.dcm') | |
| 988 self.assertEqual(2, len(DoGet(_REMOTE, '/patients'))) | |
| 989 a = DoGet(_REMOTE, '/patients')[0] | |
| 990 b = DoGet(_REMOTE, '/patients')[1] | |
| 991 self.assertEqual(0, DoGet(_REMOTE, '/patients/%s/protected' % a)) | |
| 992 DoPost(_REMOTE, '/patients/%s/protected' % a, headers = { 'X-HTTP-Method-Override' : 'PUT' }, data = '0') | |
| 993 self.assertEqual(0, DoGet(_REMOTE, '/patients/%s/protected' % a)) | |
| 994 DoPost(_REMOTE, '/patients/%s/protected' % a, headers = { 'X-HTTP-Method-Override' : 'PUT' }, data = '1') | |
| 995 self.assertEqual(1, DoGet(_REMOTE, '/patients/%s/protected' % a)) | |
| 996 DoPost(_REMOTE, '/patients/%s/protected' % a, headers = { 'X-HTTP-Method-Override' : 'PUT' }, data = '0') | |
| 997 self.assertEqual(0, DoGet(_REMOTE, '/patients/%s/protected' % a)) | |
| 998 | |
| 999 | |
| 1000 def test_faking_google_delete(self): | |
| 1001 UploadInstance(_REMOTE, 'Knee/T1/IM-0001-0001.dcm') | |
| 1002 UploadInstance(_REMOTE, 'Brainix/Flair/IM-0001-0001.dcm') | |
| 1003 self.assertEqual(2, len(DoGet(_REMOTE, '/patients'))) | |
| 1004 a = DoGet(_REMOTE, '/patients')[0] | |
| 1005 b = DoGet(_REMOTE, '/patients')[1] | |
| 1006 DoPost(_REMOTE, '/patients/%s' % a, headers = { 'X-HTTP-Method-Override' : 'DELETE' }) | |
| 1007 self.assertEqual(1, len(DoGet(_REMOTE, '/patients'))) | |
| 1008 DoPost(_REMOTE, '/patients/%s' % b, headers = { 'X-HTTP-Method-Override' : 'DELETE' }) | |
| 1009 self.assertEqual(0, len(DoGet(_REMOTE, '/patients'))) | |
| 1010 | |
| 1011 | |
| 1012 def test_lua(self): | |
| 1013 self.assertEqual(42, DoPost(_REMOTE, '/tools/execute-script', 'print(42)')) | |
| 1014 self.assertTrue(IsDefinedInLua(_REMOTE, 'PrintRecursive')) | |
| 1015 self.assertFalse(IsDefinedInLua(_REMOTE, 'HelloWorld')) | |
| 1016 | |
| 1017 | |
| 1018 def test_metadata(self): | |
| 1019 UploadInstance(_REMOTE, 'Knee/T1/IM-0001-0001.dcm') | |
| 1020 p = DoGet(_REMOTE, '/patients')[0] | |
| 1021 i = DoGet(_REMOTE, '/instances')[0] | |
| 1022 | |
| 1023 m = DoGet(_REMOTE, '/patients/%s/metadata' % p) | |
| 1024 self.assertEqual(1, len(m)) | |
| 1025 self.assertEqual('LastUpdate', m[0]) | |
| 1026 | |
| 1027 m = DoGet(_REMOTE, '/instances/%s/metadata' % i) | |
| 145 | 1028 self.assertEqual(8, len(m)) |
| 12 | 1029 self.assertTrue('IndexInSeries' in m) |
| 1030 self.assertTrue('ReceptionDate' in m) | |
| 1031 self.assertTrue('RemoteAET' in m) | |
|
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1032 self.assertTrue('Origin' in m) |
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1033 self.assertTrue('TransferSyntax' in m) |
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1034 self.assertTrue('SopClassUid' in m) |
| 145 | 1035 self.assertTrue('RemoteIP' in m) |
| 1036 self.assertTrue('HttpUsername' in m) | |
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1037 self.assertEqual(DoGet(_REMOTE, '/instances/%s/metadata/IndexInSeries' % i), 1) |
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1038 self.assertEqual(DoGet(_REMOTE, '/instances/%s/metadata/Origin' % i), 'RestApi') |
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1039 self.assertEqual(DoGet(_REMOTE, '/instances/%s/metadata/RemoteAET' % i), '') # None, received by REST API |
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1040 self.assertEqual(DoGet(_REMOTE, '/instances/%s/metadata/TransferSyntax' % i), '1.2.840.10008.1.2.4.91') # JPEG2k |
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1041 self.assertEqual(DoGet(_REMOTE, '/instances/%s/metadata/SopClassUid' % i), '1.2.840.10008.5.1.4.1.1.4') |
| 12 | 1042 |
| 1043 # Play with custom metadata | |
| 1044 DoPut(_REMOTE, '/patients/%s/metadata/5555' % p, 'coucou') | |
| 1045 m = DoGet(_REMOTE, '/patients/%s/metadata' % p) | |
| 1046 self.assertEqual(2, len(m)) | |
| 1047 self.assertTrue('LastUpdate' in m) | |
| 1048 self.assertTrue('5555' in m) | |
| 1049 self.assertEqual('coucou', DoGet(_REMOTE, '/patients/%s/metadata/5555' % p)) | |
| 1050 DoPut(_REMOTE, '/patients/%s/metadata/5555' % p, 'hello') | |
| 1051 self.assertEqual('hello', DoGet(_REMOTE, '/patients/%s/metadata/5555' % p)) | |
| 1052 DoDelete(_REMOTE, '/patients/%s/metadata/5555' % p) | |
| 1053 m = DoGet(_REMOTE, '/patients/%s/metadata' % p) | |
| 1054 self.assertEqual(1, len(m)) | |
| 1055 self.assertTrue('LastUpdate' in m) | |
| 13 | 1056 |
| 1057 | |
| 1058 def test_statistics(self): | |
| 1059 # Upload 16 instances | |
| 1060 for i in range(4): | |
| 1061 UploadInstance(_REMOTE, 'Brainix/Flair/IM-0001-000%d.dcm' % (i + 1)) | |
| 1062 UploadInstance(_REMOTE, 'Brainix/Epi/IM-0001-000%d.dcm' % (i + 1)) | |
| 1063 UploadInstance(_REMOTE, 'Knee/T1/IM-0001-000%d.dcm' % (i + 1)) | |
| 1064 UploadInstance(_REMOTE, 'Knee/T2/IM-0001-000%d.dcm' % (i + 1)) | |
| 1065 | |
| 1066 s = DoGet(_REMOTE, '/statistics') | |
| 1067 self.assertEqual(16, s['CountInstances']) | |
| 1068 self.assertEqual(2, s['CountPatients']) | |
| 1069 self.assertEqual(2, s['CountStudies']) | |
| 1070 self.assertEqual(4, s['CountSeries']) | |
| 1071 d = int(s['TotalUncompressedSize']) | |
| 1072 | |
| 1073 e = 0 | |
| 1074 for patient in DoGet(_REMOTE, '/patients'): | |
| 1075 s = DoGet(_REMOTE, '/patients/%s/statistics' % patient) | |
| 1076 self.assertEqual(8, s['CountInstances']) | |
| 1077 self.assertEqual(1, s['CountStudies']) | |
| 1078 self.assertEqual(2, s['CountSeries']) | |
| 1079 e += int(s['UncompressedSize']) | |
| 1080 | |
| 1081 for study in DoGet(_REMOTE, '/studies'): | |
| 1082 s = DoGet(_REMOTE, '/studies/%s/statistics' % study) | |
| 1083 self.assertEqual(8, s['CountInstances']) | |
| 1084 self.assertEqual(2, s['CountSeries']) | |
| 1085 e += int(s['UncompressedSize']) | |
| 1086 | |
| 1087 for series in DoGet(_REMOTE, '/series'): | |
| 1088 s = DoGet(_REMOTE, '/series/%s/statistics' % series) | |
| 1089 self.assertEqual(4, s['CountInstances']) | |
| 1090 e += int(s['UncompressedSize']) | |
| 1091 | |
| 1092 self.assertEqual(3 * d, e) | |
| 1093 | |
| 1094 | |
| 1095 def test_custom_attachment(self): | |
| 1096 UploadInstance(_REMOTE, 'Brainix/Flair/IM-0001-0001.dcm') | |
| 1097 patient = DoGet(_REMOTE, '/patients')[0] | |
| 1098 instance = DoGet(_REMOTE, '/instances')[0] | |
| 1099 size = int(DoGet(_REMOTE, '/patients/%s/statistics' % patient)['DiskSize']) | |
| 1100 self.assertEqual(size, int(DoGet(_REMOTE, '/statistics')['TotalDiskSize'])) | |
| 1101 | |
| 1102 self.assertEqual(0, len(DoGet(_REMOTE, '/patients/%s/attachments' % patient))) | |
| 1103 self.assertEqual(2, len(DoGet(_REMOTE, '/instances/%s/attachments' % instance))) | |
| 1104 self.assertTrue('dicom' in DoGet(_REMOTE, '/instances/%s/attachments' % instance)) | |
| 1105 self.assertTrue('dicom-as-json' in DoGet(_REMOTE, '/instances/%s/attachments' % instance)) | |
| 1106 | |
| 1107 self.assertRaises(Exception, lambda: DoPut(_REMOTE, '/patients/%s/attachments/22' % patient, 'hello')) | |
| 1108 hello = 'hellohellohellohellohellohellohellohellohello' | |
| 1109 DoPut(_REMOTE, '/patients/%s/attachments/1025' % patient, hello) | |
| 1110 self.assertEqual(int(DoGet(_REMOTE, '/patients/%s/statistics' % patient)['DiskSize']), | |
| 1111 int(DoGet(_REMOTE, '/statistics')['TotalDiskSize'])) | |
| 1112 self.assertEqual(int(DoGet(_REMOTE, '/patients/%s/statistics' % patient)['DiskSize']), | |
| 1113 size + int(DoGet(_REMOTE, '/patients/%s/attachments/1025/compressed-size' % patient))) | |
| 1114 | |
| 1115 DoPut(_REMOTE, '/patients/%s/attachments/1026' % patient, 'world') | |
| 1116 self.assertEqual(int(DoGet(_REMOTE, '/patients/%s/statistics' % patient)['DiskSize']), | |
| 1117 int(DoGet(_REMOTE, '/statistics')['TotalDiskSize'])) | |
| 1118 self.assertEqual(int(DoGet(_REMOTE, '/patients/%s/statistics' % patient)['DiskSize']), | |
| 1119 size + | |
| 1120 int(DoGet(_REMOTE, '/patients/%s/attachments/1025/compressed-size' % patient)) + | |
| 1121 int(DoGet(_REMOTE, '/patients/%s/attachments/1026/compressed-size' % patient))) | |
| 1122 | |
| 1123 self.assertEqual(2, len(DoGet(_REMOTE, '/patients/%s/attachments' % patient))) | |
| 1124 self.assertEqual(hello, DoGet(_REMOTE, '/patients/%s/attachments/1025/data' % patient)) | |
| 1125 self.assertEqual('world', DoGet(_REMOTE, '/patients/%s/attachments/1026/data' % patient)) | |
| 1126 DoPost(_REMOTE, '/patients/%s/attachments/1025/verify-md5' % patient) | |
| 1127 DoPost(_REMOTE, '/patients/%s/attachments/1026/verify-md5' % patient) | |
| 1128 DoPut(_REMOTE, '/patients/%s/attachments/1026' % patient, 'world2') | |
| 1129 self.assertEqual('world2', DoGet(_REMOTE, '/patients/%s/attachments/1026/data' % patient)) | |
| 1130 | |
| 1131 self.assertRaises(Exception, lambda: DoDelete(_REMOTE, '/instances/%s/attachments/dicom' % instance)) | |
| 1132 DoDelete(_REMOTE, '/patients/%s/attachments/1025' % patient) | |
| 1133 self.assertEqual(int(DoGet(_REMOTE, '/patients/%s/statistics' % patient)['DiskSize']), | |
| 1134 int(DoGet(_REMOTE, '/statistics')['TotalDiskSize'])) | |
| 1135 self.assertEqual(int(DoGet(_REMOTE, '/patients/%s/statistics' % patient)['DiskSize']), | |
| 1136 size + int(DoGet(_REMOTE, '/patients/%s/attachments/1026/compressed-size' % patient))) | |
| 1137 | |
| 1138 self.assertEqual(1, len(DoGet(_REMOTE, '/patients/%s/attachments' % patient))) | |
| 1139 DoDelete(_REMOTE, '/patients/%s/attachments/1026' % patient) | |
| 1140 self.assertEqual(0, len(DoGet(_REMOTE, '/patients/%s/attachments' % patient))) | |
| 1141 | |
| 1142 self.assertEqual(int(DoGet(_REMOTE, '/patients/%s/statistics' % patient)['DiskSize']), size) | |
| 1143 self.assertEqual(size, int(DoGet(_REMOTE, '/statistics')['TotalDiskSize'])) | |
| 1144 | |
| 1145 | |
| 1146 def test_incoming_storescu(self): | |
| 1147 self.assertEqual(0, len(DoGet(_REMOTE, '/patients'))) | |
| 45 | 1148 subprocess.check_call([ FindExecutable('storescu'), |
|
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1149 _REMOTE['Server'], str(_REMOTE['DicomPort']), |
| 13 | 1150 GetDatabasePath('ColorTestImageJ.dcm') ]) |
| 1151 self.assertEqual(1, len(DoGet(_REMOTE, '/patients'))) | |
| 1152 | |
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1153 i = DoGet(_REMOTE, '/instances') |
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1154 self.assertEqual(1, len(i)) |
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1155 m = DoGet(_REMOTE, '/instances/%s/metadata' % i[0]) |
| 145 | 1156 self.assertEqual(8, len(m)) |
|
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1157 self.assertTrue('IndexInSeries' in m) |
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1158 self.assertTrue('ReceptionDate' in m) |
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1159 self.assertTrue('RemoteAET' in m) |
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1160 self.assertTrue('Origin' in m) |
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1161 self.assertTrue('TransferSyntax' in m) |
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1162 self.assertTrue('SopClassUid' in m) |
| 145 | 1163 self.assertTrue('RemoteIP' in m) |
| 1164 self.assertTrue('CalledAET' in m) | |
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1165 self.assertEqual(DoGet(_REMOTE, '/instances/%s/metadata/IndexInSeries' % i[0]), 1) |
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1166 self.assertEqual(DoGet(_REMOTE, '/instances/%s/metadata/Origin' % i[0]), 'DicomProtocol') |
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1167 self.assertEqual(DoGet(_REMOTE, '/instances/%s/metadata/RemoteAET' % i[0]), 'STORESCU') |
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1168 self.assertEqual(DoGet(_REMOTE, '/instances/%s/metadata/TransferSyntax' % i[0]), '1.2.840.10008.1.2.1') |
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1169 self.assertEqual(DoGet(_REMOTE, '/instances/%s/metadata/SopClassUid' % i[0]), '1.2.840.10008.5.1.4.1.1.7') |
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1170 |
| 13 | 1171 |
| 1172 def test_incoming_findscu(self): | |
| 1173 UploadInstance(_REMOTE, 'Multiframe.dcm') | |
| 1174 UploadInstance(_REMOTE, 'ColorTestImageJ.dcm') | |
| 1175 | |
| 1176 i = CallFindScu([ '-k', '0008,0052=PATIENT', '-k', '0010,0010' ]) | |
| 1177 patientNames = re.findall('\(0010,0010\).*?\[(.*?)\]', i) | |
| 1178 self.assertEqual(2, len(patientNames)) | |
| 1179 self.assertTrue('Test Patient BG ' in patientNames) | |
| 1180 self.assertTrue('Anonymized' in patientNames) | |
| 1181 | |
| 1182 i = CallFindScu([ '-k', '0008,0052=SERIES', '-k', '0008,0021' ]) | |
| 1183 series = re.findall('\(0008,0021\).*?\[\s*(.*?)\s*\]', i) | |
| 1184 self.assertEqual(2, len(series)) | |
| 1185 self.assertTrue('20070208' in series) | |
| 1186 self.assertTrue('19980312' in series) | |
| 1187 | |
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1188 i = CallFindScu([ '-k', '0008,0052=SERIES', '-k', '0008,0021', '-k', 'ModalitiesInStudy=MR\\XA' ]) |
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1189 series = re.findall('\(0008,0021\).*?\[\s*(.*?)\s*\]', i) |
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1190 self.assertEqual(1, len(series)) |
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1191 self.assertTrue('19980312' in series) |
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1192 |
| 13 | 1193 i = CallFindScu([ '-k', '0008,0052=SERIES', '-k', 'PatientName=Anonymized' ]) |
| 1194 series = re.findall('\(0010,0010\).*?\[\s*(.*?)\s*\]', i) | |
| 1195 self.assertEqual(1, len(series)) | |
| 1196 | |
| 1197 # Test the "CaseSentitivePN" flag (false by default) | |
| 1198 i = CallFindScu([ '-k', '0008,0052=SERIES', '-k', 'PatientName=anonymized' ]) | |
| 1199 series = re.findall('\(0010,0010\).*?\[\s*(.*?)\s*\]', i) | |
| 1200 self.assertEqual(1, len(series)) | |
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1201 |
| 70 | 1202 # Test range search (buggy if Orthanc <= 0.9.6) |
| 1203 i = CallFindScu([ '-k', '0008,0052=STUDY', '-k', 'StudyDate=19980312-' ]) | |
| 1204 studies = re.findall('\(0008,0020\).*?\[\s*(.*?)\s*\]', i) | |
| 1205 self.assertEqual(2, len(studies)) | |
| 1206 self.assertTrue('20070208' in studies) | |
| 1207 self.assertTrue('19980312' in studies) | |
| 1208 i = CallFindScu([ '-k', '0008,0052=STUDY', '-k', 'StudyDate=19980312-19980312' ]) | |
| 1209 studies = re.findall('\(0008,0020\).*?\[\s*(.*?)\s*\]', i) | |
| 1210 self.assertEqual(1, len(studies)) | |
| 1211 self.assertTrue('19980312' in studies) | |
| 1212 i = CallFindScu([ '-k', '0008,0052=STUDY', '-k', 'StudyDate=-19980312' ]) | |
| 1213 studies = re.findall('\(0008,0020\).*?\[\s*(.*?)\s*\]', i) | |
| 1214 self.assertEqual(1, len(studies)) | |
| 1215 self.assertTrue('19980312' in studies) | |
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1216 |
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1217 # Test that "Retrieve AE Title (0008,0054)" is present, which |
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1218 # was *not* the case in Orthanc <= 1.7.2 |
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1219 i = CallFindScu([ '-k', '0008,0052=INSTANCE' ]) |
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1220 instances = re.findall('\(0008,0054\).*?\[\s*(.*?)\s*\]', i) |
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1221 self.assertEqual(2, len(instances)) |
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1222 self.assertEqual('ORTHANC', instances[0].strip()) |
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1223 self.assertEqual('ORTHANC', instances[1].strip()) |
| 13 | 1224 |
| 1225 | |
|
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1226 def test_incoming_findscu_2(self): |
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1227 # This test fails if "LookupMode_DatabaseOnly" is used |
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1228 # (sequences are not available in this mode, and only main |
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1229 # DICOM tags are returned) |
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1230 UploadInstance(_REMOTE, 'Multiframe.dcm') |
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1231 UploadInstance(_REMOTE, 'ColorTestImageJ.dcm') |
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1232 |
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1233 # Test returning sequence values (only since Orthanc 0.9.5) |
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1234 i = CallFindScu([ '-k', '0008,0052=SERIES', '-k', '0008,2112' ]) # "ColorTestImageJ" has this sequence tag |
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1235 sequences = re.findall('\(0008,2112\)', i) |
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1236 self.assertEqual(1, len(sequences)) |
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1237 |
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1238 # Test returning a non-main DICOM tag, |
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1239 # "SecondaryCaptureDeviceID" (0018,1010), whose value is |
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1240 # "MEDPC" in "ColorTestImageJ.dcm" |
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1241 i = CallFindScu([ '-k', '0008,0052=SERIES', '-k', '0018,1010' ]) |
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1242 tags = re.findall('\(0018,1010\).*MEDPC', i) |
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1243 self.assertEqual(1, len(tags)) |
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1244 |
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1245 |
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1246 def test_incoming_findscu_3(self): |
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1247 # This test fails if "LookupMode_DatabaseOnly" or |
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1248 # "LookupMode_DiskOnAnswer" is used, as |
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1249 # "SecondaryCaptureDeviceID" (0018,1010) is not a main DICOM |
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1250 # tag, as thus a constraint cannot be applied to it |
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1251 UploadInstance(_REMOTE, 'ColorTestImageJ.dcm') |
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1252 |
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1253 i = CallFindScu([ '-k', '0008,0052=SERIES', '-k', '0018,1010=MEDPC' ]) |
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1254 sequences = re.findall('\(0018,1010\)', i) |
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1255 self.assertEqual(1, len(sequences)) |
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1256 |
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1257 |
| 13 | 1258 def test_incoming_movescu(self): |
| 1259 UploadInstance(_REMOTE, 'Multiframe.dcm') | |
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1260 |
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1261 # No matching patient, so no job is created |
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1262 self.assertEqual(0, len(DoGet(_LOCAL, '/patients'))) |
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1263 CallMoveScu([ '--patient', '-k', '0008,0052=PATIENT', '-k', 'PatientID=none' ]) |
| 13 | 1264 self.assertEqual(0, len(DoGet(_LOCAL, '/patients'))) |
|
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1265 |
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1266 # 1 Matching patient, track the job |
| 138 | 1267 self.assertTrue(MonitorJob(_REMOTE, lambda: CallMoveScu([ |
| 1268 '--patient', | |
| 1269 '-k', '0008,0052=PATIENT', | |
| 1270 '-k', 'PatientID=12345678' | |
| 1271 ]))) | |
| 13 | 1272 self.assertEqual(1, len(DoGet(_LOCAL, '/patients'))) |
| 1273 | |
| 1274 | |
| 1275 def test_findscu(self): | |
| 1276 i = UploadInstance(_REMOTE, 'DummyCT.dcm')['ID'] | |
| 1277 j = UploadInstance(_REMOTE, 'Issue22.dcm')['ID'] | |
| 1278 k = UploadInstance(_REMOTE, 'ColorTestImageJ.dcm')['ID'] | |
| 1279 DoPost(_REMOTE, '/modalities/orthanctest/store', str(i), 'text/plain') | |
| 1280 | |
| 1281 # Test the "find-patient" level | |
| 1282 p = DoPost(_REMOTE, '/modalities/orthanctest/find-patient', { }) | |
| 1283 self.assertEqual(1, len(p)) | |
| 1284 self.assertEqual('ozp00SjY2xG', p[0]['PatientID']) | |
| 1285 | |
| 1286 # Test wildcards constraints. The "LO" value representation | |
| 1287 # for PatientID is always case-sensitive, but the "PN" for | |
| 1288 # PatientName might depend on the implementation: | |
| 1289 # "GenerateConfigurationForTests.py" will force it to be case | |
| 1290 # insensitive (which was the default until Orthanc 0.8.6). | |
| 1291 p = DoPost(_REMOTE, '/modalities/orthanctest/find-patient', { 'PatientName' : 'K*' }) | |
| 1292 self.assertEqual(1, len(p)) | |
| 1293 | |
| 1294 p = DoPost(_REMOTE, '/modalities/orthanctest/find-patient', { 'PatientName' : 'k*' }) | |
| 1295 self.assertEqual(1, len(p)) | |
| 1296 | |
| 1297 p = DoPost(_REMOTE, '/modalities/orthanctest/find-patient', { 'PatientID' : 'ozp*' }) | |
| 1298 self.assertEqual(1, len(p)) | |
| 1299 | |
| 1300 p = DoPost(_REMOTE, '/modalities/orthanctest/find-patient', { 'PatientID' : 'o?p*' }) | |
| 1301 self.assertEqual(1, len(p)) | |
| 1302 | |
| 1303 p = DoPost(_REMOTE, '/modalities/orthanctest/find-patient', { 'PatientID' : '0?q*' }) | |
| 1304 self.assertEqual(0, len(p)) | |
| 1305 | |
| 1306 p = DoPost(_REMOTE, '/modalities/orthanctest/find-patient', { 'PatientName' : 'B*' }) | |
| 1307 self.assertEqual(0, len(p)) | |
| 1308 | |
| 1309 p = DoPost(_REMOTE, '/modalities/orthanctest/find-patient', { 'PatientName' : 'b*' }) | |
| 1310 self.assertEqual(0, len(p)) | |
| 1311 | |
| 1312 DoPost(_REMOTE, '/modalities/orthanctest/store', str(j), 'text/plain') | |
| 1313 DoPost(_REMOTE, '/modalities/orthanctest/store', str(k), 'text/plain') | |
| 1314 DoPost(_REMOTE, '/modalities/orthanctest/find-patient', { }) | |
| 1315 self.assertEqual(3, len(DoPost(_REMOTE, '/modalities/orthanctest/find-patient', { }))) | |
| 1316 | |
| 1317 p = DoPost(_REMOTE, '/modalities/orthanctest/find-patient', { 'PatientName' : 'A*' }) | |
| 1318 self.assertEqual(2, len(p)) | |
| 1319 | |
| 1320 # Test the "find-study" level. This is the instance "ColorTestImageJ.dcm" | |
| 1321 s = DoPost(_REMOTE, '/modalities/orthanctest/find-study', { 'PatientID' : 'B9uTHKOZ' }) | |
| 1322 self.assertEqual(1, len(s)) | |
| 1323 self.assertEqual('20070208', s[0]['StudyDate']) | |
| 1324 | |
| 1325 # Test range searches | |
| 1326 t = DoPost(_REMOTE, '/modalities/orthanctest/find-study', { 'PatientID' : 'B9uTHKOZ', | |
| 1327 'StudyDate' : '-20070101' }) | |
| 1328 self.assertEqual(0, len(t)) | |
| 1329 | |
| 1330 t = DoPost(_REMOTE, '/modalities/orthanctest/find-study', { 'PatientID' : 'B9uTHKOZ', | |
| 1331 'StudyDate' : '20090101-' }) | |
| 1332 self.assertEqual(0, len(t)) | |
| 1333 | |
| 1334 t = DoPost(_REMOTE, '/modalities/orthanctest/find-study', { 'PatientID' : 'B9uTHKOZ', | |
| 1335 'StudyDate' : '20070101-' }) | |
| 1336 self.assertEqual(1, len(t)) | |
| 1337 | |
| 1338 t = DoPost(_REMOTE, '/modalities/orthanctest/find-study', { 'PatientID' : 'B9uTHKOZ', | |
| 1339 'StudyDate' : '-20090101' }) | |
| 1340 self.assertEqual(1, len(t)) | |
| 1341 | |
| 1342 t = DoPost(_REMOTE, '/modalities/orthanctest/find-study', { 'PatientID' : 'B9uTHKOZ', | |
| 1343 'StudyDate' : '20070207-20070207' }) | |
| 1344 self.assertEqual(0, len(t)) | |
| 1345 | |
| 1346 t = DoPost(_REMOTE, '/modalities/orthanctest/find-study', { 'PatientID' : 'B9uTHKOZ', | |
| 1347 'StudyDate' : '20070208-20070208' }) | |
| 1348 self.assertEqual(1, len(t)) | |
| 1349 | |
| 1350 t = DoPost(_REMOTE, '/modalities/orthanctest/find-study', { 'PatientID' : 'B9uTHKOZ', | |
| 1351 'StudyDate' : '20070209-20070209' }) | |
| 1352 self.assertEqual(0, len(t)) | |
| 1353 | |
| 1354 # Test the ModalitiesInStudy tag | |
| 1355 t = DoPost(_REMOTE, '/modalities/orthanctest/find-study', { | |
| 1356 'PatientID' : 'B9uTHKOZ', | |
| 1357 'ModalitiesInStudy' : 'US' }) | |
| 1358 self.assertEqual(0, len(t)) | |
| 1359 | |
| 1360 t = DoPost(_REMOTE, '/modalities/orthanctest/find-study', { | |
| 1361 'PatientID' : 'B9uTHKOZ', | |
| 1362 'ModalitiesInStudy' : 'CT' }) | |
| 1363 self.assertEqual(1, len(t)) | |
| 1364 | |
| 1365 t = DoPost(_REMOTE, '/modalities/orthanctest/find-study', { | |
| 1366 'PatientID' : 'B9uTHKOZ', | |
| 1367 'ModalitiesInStudy' : 'US\\CT' }) | |
| 1368 self.assertEqual(1, len(t)) | |
| 1369 | |
| 1370 # Test the "find-series" level | |
| 1371 t = DoPost(_REMOTE, '/modalities/orthanctest/find-series', { | |
| 1372 'PatientID' : 'B9uTHKOZ', | |
| 1373 'StudyInstanceUID' : s[0]['StudyInstanceUID'] }) | |
| 1374 self.assertEqual(1, len(t)) | |
| 1375 | |
| 1376 # Test "\" separator | |
| 1377 t = DoPost(_REMOTE, '/modalities/orthanctest/find-series', { | |
| 1378 'PatientID' : 'B9uTHKOZ', | |
| 1379 'StudyInstanceUID' : s[0]['StudyInstanceUID'], | |
| 1380 'Modality' : 'MR\\CT\\US' }) | |
| 1381 self.assertEqual(1, len(t)) | |
| 1382 | |
| 1383 t = DoPost(_REMOTE, '/modalities/orthanctest/find-series', { | |
| 1384 'PatientID' : 'B9uTHKOZ', | |
| 1385 'StudyInstanceUID' : s[0]['StudyInstanceUID'], | |
| 1386 'Modality' : 'MR\\US' }) | |
| 1387 self.assertEqual(0, len(t)) | |
| 1388 | |
| 1389 | |
| 1390 def test_update_modalities(self): | |
| 1391 try: | |
| 1392 DoDelete(_REMOTE, '/modalities/toto') | |
| 1393 except: | |
| 1394 pass | |
| 1395 try: | |
| 1396 DoDelete(_REMOTE, '/modalities/tata') | |
| 1397 except: | |
| 1398 pass | |
| 1399 self.assertRaises(Exception, lambda: DoGet(_REMOTE, '/modalities/toto')) | |
| 1400 DoPut(_REMOTE, '/modalities/toto', [ "STORESCP", "localhost", 2000 ]) | |
| 116 | 1401 DoPut(_REMOTE, '/modalities/tata', [ "STORESCP", "localhost", 2000, 'MedInria' ]) # check backward compatiblity with obsolete manufacturer |
| 1402 DoDelete(_REMOTE, '/modalities/tata') | |
| 124 | 1403 DoPut(_REMOTE, '/modalities/tata', [ "STORESCP", "localhost", 2000, 'GenericNoUniversalWildcard' ]) |
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1404 DoDelete(_REMOTE, '/modalities/tata') |
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1405 DoPut(_REMOTE, '/modalities/tata', [ "STORESCP", "localhost", 2000, 'GenericNoWildcardInDates' ]) |
| 128 | 1406 modalitiesReadback = DoGet(_REMOTE, '/modalities?expand') |
|
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1407 self.assertEqual('STORESCP', modalitiesReadback['tata']['AET']) |
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1408 self.assertEqual('localhost', modalitiesReadback['tata']['Host']) |
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1409 self.assertEqual(2000, modalitiesReadback['tata']['Port']) |
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1410 self.assertEqual('GenericNoWildcardInDates', modalitiesReadback['tata']['Manufacturer']) |
| 116 | 1411 self.assertRaises(Exception, lambda: DoPut(_REMOTE, '/modalities/toto', [ "STORESCP", "localhost", 2000, 'InvalidManufacturerName' ])) |
| 13 | 1412 self.assertTrue('store' in DoGet(_REMOTE, '/modalities/toto')) |
| 1413 self.assertTrue('store' in DoGet(_REMOTE, '/modalities/tata')) | |
| 1414 DoDelete(_REMOTE, '/modalities/toto') | |
| 1415 DoDelete(_REMOTE, '/modalities/tata') | |
| 1416 self.assertRaises(Exception, lambda: DoGet(_REMOTE, '/modalities/toto')) | |
| 1417 self.assertRaises(Exception, lambda: DoGet(_REMOTE, '/modalities/tata')) | |
| 1418 | |
| 1419 | |
| 1420 def test_update_peers(self): | |
| 1421 # curl -X PUT http://localhost:8042/peers/toto -d '["http://localhost:8042/"]' -v | |
| 1422 try: | |
| 1423 DoDelete(_REMOTE, '/peers/toto') | |
| 1424 except: | |
| 1425 pass | |
| 1426 try: | |
| 1427 DoDelete(_REMOTE, '/peers/tata') | |
| 1428 except: | |
| 1429 pass | |
| 1430 self.assertRaises(Exception, lambda: DoGet(_REMOTE, '/peers/toto')) | |
| 1431 DoPut(_REMOTE, '/peers/toto', [ 'http://localhost:8042/' ]) | |
| 214 | 1432 DoPut(_REMOTE, '/peers/tata', { 'Url': 'http://localhost:8042/', |
| 1433 'Username': 'user', | |
| 1434 'Password' : 'pass', | |
| 1435 'RemoteSelf' : 'self' }) | |
| 128 | 1436 self.assertTrue('tata' in DoGet(_REMOTE, '/peers')) |
| 1437 peersReadback = DoGet(_REMOTE, '/peers?expand') | |
| 1438 self.assertEqual('http://localhost:8042/', peersReadback['tata']['Url']) | |
| 1439 self.assertEqual('user', peersReadback['tata']['Username']) | |
| 214 | 1440 |
| 1441 if IsOrthancVersionAbove(_REMOTE, 1, 5, 4): | |
| 1442 self.assertEqual(None, peersReadback['tata']['Password']) # make sure no sensitive data is included | |
| 1443 self.assertFalse(peersReadback['tata']['Pkcs11']) # make sure no sensitive data is included | |
| 1444 self.assertEqual('self', peersReadback['tata']['RemoteSelf']) | |
| 1445 else: | |
| 1446 self.assertFalse('Password' in peersReadback['tata']) # make sure no sensitive data is included | |
| 1447 self.assertFalse('Pkcs11' in peersReadback['tata']) # make sure no sensitive data is included | |
| 1448 self.assertFalse('RemoteSelf' in peersReadback['tata']) | |
| 1449 | |
| 128 | 1450 self.assertFalse('CertificateFile' in peersReadback['tata']) # make sure no sensitive data is included |
| 1451 self.assertFalse('CertificateKeyFile' in peersReadback['tata']) # make sure no sensitive data is included | |
| 1452 self.assertFalse('CertificateKeyPassword' in peersReadback['tata']) # make sure no sensitive data is included | |
| 214 | 1453 |
| 13 | 1454 self.assertRaises(Exception, lambda: DoPut(_REMOTE, '/peers/toto', [ 'http://localhost:8042/', 'a' ])) |
| 1455 self.assertRaises(Exception, lambda: DoPut(_REMOTE, '/peers/toto', [ 'http://localhost:8042/', 'a', 'b', 'c' ])) | |
| 1456 self.assertTrue('store' in DoGet(_REMOTE, '/peers/toto')) | |
| 1457 self.assertTrue('store' in DoGet(_REMOTE, '/peers/tata')) | |
| 1458 DoDelete(_REMOTE, '/peers/toto') | |
| 1459 DoDelete(_REMOTE, '/peers/tata') | |
| 1460 self.assertRaises(Exception, lambda: DoGet(_REMOTE, '/peers/toto')) | |
| 1461 self.assertRaises(Exception, lambda: DoGet(_REMOTE, '/peers/tata')) | |
| 1462 | |
| 1463 | |
| 1464 def test_mesterhazy_modification(self): | |
| 1465 # When I modify a series ( eg. curl | |
| 1466 # http://localhost:8042/series/uidhere/modify -X POST -d | |
| 1467 # '{"Replace":{"SeriesDate":"19990101"}}' ) the modified | |
| 1468 # series is added to a new Study, instead of the existing | |
| 1469 # Study. Fixed in Orthanc 0.7.5 | |
| 1470 | |
| 1471 u = UploadInstance(_REMOTE, 'DummyCT.dcm') | |
| 1472 study = 'b9c08539-26f93bde-c81ab0d7-bffaf2cb-a4d0bdd0' | |
| 1473 series = 'f2635388-f01d497a-15f7c06b-ad7dba06-c4c599fe' | |
| 1474 | |
| 1475 modified = DoPost(_REMOTE, '/series/%s/modify' % series, | |
| 1476 json.dumps({ "Replace" : { "SeriesDate" : "19990101" }})) | |
| 1477 | |
| 1478 self.assertEqual(study, DoGet(_REMOTE, '/series/%s' % modified['ID']) ['ParentStudy']) | |
| 1479 | |
| 1480 | |
| 1481 def test_create(self): | |
| 1482 i = DoPost(_REMOTE, '/tools/create-dicom', | |
| 1483 json.dumps({ | |
| 1484 'PatientName' : 'Jodogne', | |
| 1485 'Modality' : 'CT', | |
| 58 | 1486 'SOPClassUID' : '1.2.840.10008.5.1.4.1.1.1', |
| 13 | 1487 'PixelData' : 'data:image/png;base64,iVBORw0KGgoAAAANSUhEUgAAAAUAAAAFCAYAAACNbyblAAAAHElEQVQI12P4//8/w38GIAXDIBKE0DHxgljNBAAO9TXL0Y4OHwAAAABJRU5ErkJggg==' # red dot in RGBA |
| 1488 })) | |
| 1489 | |
| 1490 self.assertEqual('Jodogne', DoGet(_REMOTE, '/instances/%s/content/PatientName' % i['ID']).strip()) | |
| 1491 self.assertEqual('CT', DoGet(_REMOTE, '/instances/%s/content/Modality' % i['ID']).strip()) | |
| 1492 | |
| 1493 png = GetImage(_REMOTE, '/instances/%s/preview' % i['ID']) | |
| 1494 self.assertEqual((5, 5), png.size) | |
| 1495 | |
| 38 | 1496 j = DoGet(_REMOTE, i['Path']) |
| 1497 self.assertEqual('Instance', j['Type']) | |
| 1498 self.assertEqual(j['ID'], i['ID']) | |
| 1499 | |
| 13 | 1500 |
| 1501 def test_pilates(self): | |
| 1502 # "SCU failed error when accessing orthanc with osirix" by | |
| 1503 # Pilates Agentur (Mar 10, 2014 at 9:33 PM) | |
| 1504 i = UploadInstance(_REMOTE, 'PilatesArgenturGEUltrasoundOsiriX.dcm')['ID'] | |
| 1505 self.assertEqual(0, len(DoGet(_LOCAL, '/patients'))) | |
| 1506 j = DoPost(_REMOTE, '/modalities/orthanctest/store', str(i), 'text/plain') | |
| 1507 self.assertEqual(1, len(DoGet(_LOCAL, '/patients'))) | |
| 1508 | |
| 1509 | |
| 1510 def test_shared_tags(self): | |
| 1511 a = UploadInstance(_REMOTE, 'Knee/T1/IM-0001-0001.dcm')['ID'] | |
| 1512 b = UploadInstance(_REMOTE, 'Knee/T1/IM-0001-0002.dcm')['ID'] | |
| 1513 p = DoGet(_REMOTE, '/patients')[0] | |
| 1514 | |
| 1515 self.assertTrue('0010,0010' in DoGet(_REMOTE, '/patients/%s/shared-tags' % p)) | |
| 1516 self.assertTrue('PatientName' in DoGet(_REMOTE, '/patients/%s/shared-tags?simplify' % p)) | |
|
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1517 self.assertTrue('0010,0010' in DoGet(_REMOTE, '/patients/%s/shared-tags?short' % p)) |
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1518 |
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1519 self.assertEqual('KNEE', DoGet(_REMOTE, '/patients/%s/shared-tags' % p)['0010,0010']['Value']) |
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1520 self.assertEqual('KNEE', DoGet(_REMOTE, '/patients/%s/shared-tags?simplify' % p)['PatientName']) |
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1521 self.assertEqual('KNEE', DoGet(_REMOTE, '/patients/%s/shared-tags?short' % p)['0010,0010']) |
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1522 |
| 13 | 1523 self.assertTrue('0008,1030' in DoGet(_REMOTE, '/patients/%s/shared-tags' % p)) |
| 1524 self.assertTrue('StudyDescription' in DoGet(_REMOTE, '/patients/%s/shared-tags?simplify' % p)) | |
| 1525 self.assertTrue('0008,103e' in DoGet(_REMOTE, '/patients/%s/shared-tags' % p)) | |
| 1526 self.assertTrue('SeriesDescription' in DoGet(_REMOTE, '/patients/%s/shared-tags?simplify' % p)) | |
| 1527 self.assertFalse('0008,0018' in DoGet(_REMOTE, '/patients/%s/shared-tags' % p)) | |
| 1528 self.assertFalse('SOPInstanceUID' in DoGet(_REMOTE, '/patients/%s/shared-tags?simplify' % p)) | |
| 1529 | |
| 1530 self.assertTrue('0008,0018' in DoGet(_REMOTE, '/instances/%s/tags' % a)) | |
| 1531 self.assertTrue('SOPInstanceUID' in DoGet(_REMOTE, '/instances/%s/tags?simplify' % a)) | |
| 1532 | |
| 1533 | |
| 1534 def test_modules(self): | |
| 1535 a = UploadInstance(_REMOTE, 'Knee/T1/IM-0001-0001.dcm')['ID'] | |
| 1536 p = DoGet(_REMOTE, '/patients')[0] | |
| 1537 s = DoGet(_REMOTE, '/studies')[0] | |
| 1538 t = DoGet(_REMOTE, '/series')[0] | |
| 1539 | |
| 1540 self.assertTrue('0010,0010' in DoGet(_REMOTE, '/patients/%s/module' % p)) | |
| 1541 self.assertTrue('PatientName' in DoGet(_REMOTE, '/patients/%s/module?simplify' % p)) | |
| 1542 self.assertTrue('0010,0010' in DoGet(_REMOTE, '/studies/%s/module-patient' % p)) | |
| 1543 self.assertTrue('PatientName' in DoGet(_REMOTE, '/studies/%s/module-patient?simplify' % p)) | |
| 1544 self.assertTrue('0008,1030' in DoGet(_REMOTE, '/studies/%s/module' % s)) | |
| 1545 self.assertTrue('StudyDescription' in DoGet(_REMOTE, '/studies/%s/module?simplify' % s)) | |
| 1546 self.assertTrue('0008,103e' in DoGet(_REMOTE, '/series/%s/module' % p)) | |
| 1547 self.assertTrue('SeriesDescription' in DoGet(_REMOTE, '/series/%s/module?simplify' % p)) | |
| 1548 self.assertTrue('0008,0018' in DoGet(_REMOTE, '/instances/%s/module' % a)) | |
| 1549 self.assertTrue('SOPInstanceUID' in DoGet(_REMOTE, '/instances/%s/module?simplify' % a)) | |
| 1550 | |
| 1551 | |
| 1552 def test_auto_directory(self): | |
| 1553 a = UploadInstance(_REMOTE, 'Knee/T1/IM-0001-0001.dcm')['ID'] | |
| 1554 self.assertTrue('now' in DoGet(_REMOTE, '/tools')) | |
| 1555 self.assertTrue('dicom-conformance' in DoGet(_REMOTE, '/tools')) | |
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1556 self.assertTrue('invalidate-tags' in DoGet(_REMOTE, '/tools')) |
| 13 | 1557 self.assertTrue(len(DoGet(_REMOTE, '/tools/dicom-conformance')) > 1000) |
| 1558 self.assertTrue('orthanctest' in DoGet(_REMOTE, '/modalities')) | |
| 1559 self.assertTrue('echo' in DoGet(_REMOTE, '/modalities/orthanctest')) | |
| 1560 self.assertTrue('find' in DoGet(_REMOTE, '/modalities/orthanctest')) | |
| 1561 self.assertTrue('find-instance' in DoGet(_REMOTE, '/modalities/orthanctest')) | |
| 1562 self.assertTrue('find-patient' in DoGet(_REMOTE, '/modalities/orthanctest')) | |
| 1563 self.assertTrue('find-series' in DoGet(_REMOTE, '/modalities/orthanctest')) | |
| 1564 self.assertTrue('find-study' in DoGet(_REMOTE, '/modalities/orthanctest')) | |
| 1565 self.assertTrue('store' in DoGet(_REMOTE, '/modalities/orthanctest')) | |
| 1566 self.assertTrue('store' in DoGet(_REMOTE, '/peers/peer')) | |
| 1567 self.assertTrue('matlab' in DoGet(_REMOTE, '/instances/%s/frames/0' % a)) | |
| 79 | 1568 self.assertTrue('raw' in DoGet(_REMOTE, '/instances/%s/frames/0' % a)) |
| 13 | 1569 self.assertRaises(Exception, lambda: DoGet(_REMOTE, '/tools/nope')) |
| 28 | 1570 self.assertRaises(Exception, lambda: DoGet(_REMOTE, '/nope')) |
| 1571 self.assertRaises(Exception, lambda: DoGet(_REMOTE, '/nope/nope.html')) | |
| 1572 self.assertEqual(404, DoGetRaw(_REMOTE, '/nope')[0].status) | |
| 1573 self.assertEqual(404, DoGetRaw(_REMOTE, '/nope/nope.html')[0].status) | |
| 13 | 1574 |
| 1575 | |
| 1576 def test_echo(self): | |
| 1577 DoPost(_REMOTE, '/modalities/orthanctest/echo') | |
| 1578 | |
| 1579 | |
| 1580 def test_xml(self): | |
| 1581 json = DoGet(_REMOTE, '/tools', headers = { 'accept' : 'application/json' }) | |
| 1582 xml = minidom.parseString(DoGet(_REMOTE, '/tools', headers = { 'accept' : 'application/xml' })) | |
| 1583 items = xml.getElementsByTagName('root')[0].getElementsByTagName('item') | |
| 1584 self.assertEqual(len(items), len(json)) | |
| 1585 | |
| 1586 self.assertTrue('dicom-conformance' in json) | |
| 1587 | |
| 1588 ok = False | |
| 1589 for i in items: | |
| 1590 if i.childNodes[0].data == 'dicom-conformance': | |
| 1591 ok = True | |
| 1592 self.assertTrue(ok) | |
| 1593 | |
| 1594 | |
|
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1595 def test_googlecode_issue_16(self): |
| 13 | 1596 i = UploadInstance(_REMOTE, 'Issue16.dcm')['ID'] |
| 1597 t = DoGet(_REMOTE, '/instances/%s/tags?simplify' % i)['FrameIncrementPointer'] | |
| 1598 self.assertEqual('0018,1063', t) | |
| 1599 | |
| 1600 | |
|
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1601 def test_googlecode_issue_22(self): |
| 13 | 1602 s = UploadInstance(_REMOTE, 'Issue22.dcm')['ID'] |
| 1603 a = [ | |
| 1604 "f804691f62197040438f4627c6b994f1", # Frame 0 | |
| 1605 "c69eee9a51eea3e8611e82e578897254", | |
| 1606 "315666be83e2d0111c77bc0996d84901", | |
| 1607 "3e27aa959d911172c48a1436443c72b1", | |
| 1608 "958642c9e7e9d232d3869faff546058c", | |
| 1609 "5e7ea8e3e4230cae707d143481355c59", | |
| 1610 "eda37f83558d858a596175aed8b2ad47", | |
| 1611 "486713bd2895c4ecbe0e97715ac7f80a", | |
| 1612 "091ef729eb169e67da8a0faa9631f9a8", | |
| 1613 "5aa2b8c7ffe0a483efaa8e12417686ca", | |
| 1614 "e2f39e85896fe58876654b94cd0b5013", | |
| 1615 "6fd2129e4950abbe1be053bc814d5da8", | |
| 1616 "c3331a8ba7a757f3d423735ab7fa81f9", | |
| 1617 "746f808582156734dd6b6fdfd3a0b72c", | |
| 1618 "8075ea2b227a70c60ea6b7b75a6bb190", | |
| 1619 "806b8b3e300c615099c11a5ec23465aa", | |
| 1620 "7c836aa298ba6eef96434579af631a11", | |
| 1621 "a0357dc9f4f72d73a885c33d7c287446", | |
| 1622 "f25ba3be1cc7d7fad95706adc199ea7d", | |
| 1623 "8b114c526b8cbed6cad8a3248b7b480c", | |
| 1624 "44e6670f127e612a2b4aa60a0d207698", | |
| 1625 "b8945f90fe02facf2ace24ca1ecbe0a5", | |
| 1626 "95c796c2fa8f59018b15cf2987b1f79b", | |
| 1627 "ce0a51ab30224205b44920221dc27351", # Frame 23 | |
| 1628 ] | |
| 1629 | |
| 1630 self.assertEqual(24, len(DoGet(_REMOTE, '/instances/%s/frames' % s))) | |
| 1631 self.assertRaises(Exception, lambda: DoGet(_REMOTE, '/instances/%s/frames/24/preview' % s)) | |
| 1632 | |
| 1633 for i in range(len(a)): | |
| 1634 self.assertEqual(a[i], ComputeMD5(DoGet(_REMOTE, '/instances/%s/frames/%d/preview' % (s, i)))) | |
| 1635 | |
| 1636 | |
|
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1637 def test_googlecode_issue_19(self): |
|
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1638 # This is an image with "YBR_FULL" photometric interpretation, it is not supported by Orthanc |
| 13 | 1639 # gdcmconv -i /home/jodogne/DICOM/GdcmDatabase/US_DataSet/HDI5000_US/3EAF5E01 -w -o Issue19.dcm |
| 1640 | |
| 1641 a = UploadInstance(_REMOTE, 'Issue19.dcm')['ID'] | |
| 304 | 1642 if not HasGdcmPlugin(_REMOTE): |
|
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1643 self.assertRaises(Exception, lambda: DoGet(_REMOTE, '/instances/941ad3c8-05d05b88-560459f9-0eae0e20-6cddd533/preview')) |
| 13 | 1644 |
| 1645 | |
|
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|
1646 def test_googlecode_issue_37(self): |
| 13 | 1647 # Same test for issues 35 and 37. Fixed in Orthanc 0.9.1 |
| 1648 u = UploadInstance(_REMOTE, 'Beaufix/IM-0001-0001.dcm')['ID'] | |
| 1649 | |
| 1650 a = DoPost(_REMOTE, '/tools/find', { 'Level' : 'Series', | |
| 1651 'CaseSensitive' : True, | |
| 1652 'Query' : { 'StationName' : 'SMR4-MP3' }}) | |
| 1653 self.assertEqual(1, len(a)) | |
| 14 | 1654 |
| 1655 | |
| 1656 def test_rest_find(self): | |
| 1657 # Upload 8 instances | |
| 1658 for i in range(2): | |
| 1659 UploadInstance(_REMOTE, 'Brainix/Flair/IM-0001-000%d.dcm' % (i + 1)) | |
| 1660 UploadInstance(_REMOTE, 'Brainix/Epi/IM-0001-000%d.dcm' % (i + 1)) | |
| 1661 UploadInstance(_REMOTE, 'Knee/T1/IM-0001-000%d.dcm' % (i + 1)) | |
| 1662 UploadInstance(_REMOTE, 'Knee/T2/IM-0001-000%d.dcm' % (i + 1)) | |
| 1663 | |
| 1664 a = DoPost(_REMOTE, '/tools/find', { 'Level' : 'Patient', | |
| 1665 'CaseSensitive' : False, | |
|
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1666 'Query' : { 'PatientName' : 'BRAINIX' }}) |
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1667 self.assertEqual(1, len(a)) |
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1668 |
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1669 a = DoPost(_REMOTE, '/tools/find', { 'Level' : 'Patient', |
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1670 'CaseSensitive' : False, |
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1671 'Query' : { 'PatientName' : 'BRAINIX\\KNEE\\NOPE' }}) |
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1672 self.assertEqual(2, len(a)) |
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1673 |
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1674 a = DoPost(_REMOTE, '/tools/find', { 'Level' : 'Patient', |
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1675 'CaseSensitive' : False, |
| 14 | 1676 'Query' : { 'PatientName' : '*n*' }}) |
| 1677 self.assertEqual(2, len(a)) | |
| 1678 | |
| 1679 a = DoPost(_REMOTE, '/tools/find', { 'Level' : 'Patient', | |
| 1680 'CaseSensitive' : True, | |
| 1681 'Query' : { 'PatientName' : '*n*' }}) | |
| 1682 self.assertEqual(0, len(a)) | |
| 1683 | |
| 1684 a = DoPost(_REMOTE, '/tools/find', { 'Expand' : True, | |
| 1685 'Level' : 'Patient', | |
| 1686 'CaseSensitive' : False, | |
| 1687 'Query' : { 'PatientName' : '*ne*' }}) | |
| 1688 self.assertEqual(1, len(a)) | |
| 1689 self.assertEqual('20080822', a[0]['MainDicomTags']['PatientBirthDate']) | |
| 1690 | |
| 1691 a = DoPost(_REMOTE, '/tools/find', { 'Level' : 'Patient', | |
| 1692 'CaseSensitive' : True, | |
| 1693 'Query' : { 'PatientName' : '*ne*' }}) | |
| 1694 self.assertEqual(0, len(a)) | |
| 1695 | |
| 1696 a = DoPost(_REMOTE, '/tools/find', { 'Level' : 'Study', | |
| 1697 'CaseSensitive' : True, | |
| 1698 'Query' : { 'PatientName' : '*NE*' }}) | |
| 1699 self.assertEqual(1, len(a)) | |
| 1700 | |
| 1701 a = DoPost(_REMOTE, '/tools/find', { 'Level' : 'Series', | |
| 1702 'CaseSensitive' : True, | |
| 1703 'Query' : { 'PatientName' : '*NE*' }}) | |
| 1704 self.assertEqual(2, len(a)) | |
| 1705 | |
| 1706 a = DoPost(_REMOTE, '/tools/find', { 'Level' : 'Instance', | |
| 1707 'CaseSensitive' : True, | |
| 1708 'Query' : { 'PatientName' : '*NE*' }}) | |
| 1709 self.assertEqual(4, len(a)) | |
| 1710 | |
| 1711 a = DoPost(_REMOTE, '/tools/find', { 'Level' : 'Patient', 'Query' : { }}) | |
| 1712 self.assertEqual(2, len(a)) | |
| 1713 | |
| 1714 a = DoPost(_REMOTE, '/tools/find', { 'Level' : 'Study', 'Query' : { }}) | |
| 1715 self.assertEqual(2, len(a)) | |
| 1716 | |
| 1717 a = DoPost(_REMOTE, '/tools/find', { 'Level' : 'Series', 'Query' : { }}) | |
| 1718 self.assertEqual(4, len(a)) | |
| 1719 | |
| 1720 a = DoPost(_REMOTE, '/tools/find', { 'Level' : 'Instance', 'Query' : { }}) | |
| 1721 self.assertEqual(8, len(a)) | |
| 1722 | |
|
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1723 a = DoPost(_REMOTE, '/tools/find', { 'Level' : 'Study', |
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1724 'Expand' : True, |
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1725 'Query' : { 'StudyDate' : '20061201-20061201' }}) |
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1726 self.assertEqual(1, len(a)) |
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1727 self.assertEqual('BRAINIX', a[0]['PatientMainDicomTags']['PatientName']) |
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1728 |
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1729 a = DoPost(_REMOTE, '/tools/find', { 'Level' : 'Study', |
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1730 'Expand' : True, |
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1731 'Query' : { 'StudyDate' : '20061201-20091201' }}) |
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1732 self.assertEqual(2, len(a)) |
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1733 for i in range(2): |
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1734 self.assertTrue(a[i]['PatientMainDicomTags']['PatientName'] in ['BRAINIX', 'KNEE']) |
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1735 |
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1736 a = DoPost(_REMOTE, '/tools/find', { 'Level' : 'Study', |
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1737 'Query' : { 'StudyDate' : '20061202-20061202' }}) |
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1738 self.assertEqual(0, len(a)) |
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1739 |
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1740 a = DoPost(_REMOTE, '/tools/find', { 'Level' : 'Study', |
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1741 'Expand' : True, |
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1742 'Query' : { 'StudyDate' : '-20061201' }}) |
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1743 self.assertEqual(1, len(a)) |
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1744 self.assertEqual('BRAINIX', a[0]['PatientMainDicomTags']['PatientName']) |
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1745 |
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1746 a = DoPost(_REMOTE, '/tools/find', { 'Level' : 'Study', |
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1747 'Expand' : True, |
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1748 'Query' : { 'StudyDate' : '-20051201' }}) |
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1749 self.assertEqual(0, len(a)) |
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1750 |
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1751 a = DoPost(_REMOTE, '/tools/find', { 'Level' : 'Study', |
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1752 'Expand' : True, |
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1753 'Query' : { 'StudyDate' : '20061201-' }}) |
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1754 self.assertEqual(2, len(a)) |
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1755 for i in range(2): |
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1756 self.assertTrue(a[i]['PatientMainDicomTags']['PatientName'] in ['BRAINIX', 'KNEE']) |
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1757 |
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1758 a = DoPost(_REMOTE, '/tools/find', { 'Level' : 'Study', |
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1759 'Expand' : True, |
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1760 'Query' : { 'StudyDate' : '20061202-' }}) |
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1761 self.assertEqual(1, len(a)) |
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1762 self.assertEqual('KNEE', a[0]['PatientMainDicomTags']['PatientName']) |
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1763 |
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1764 a = DoPost(_REMOTE, '/tools/find', { 'Level' : 'Study', |
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1765 'Expand' : True, |
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1766 'Query' : { 'StudyDate' : '20080819-' }}) |
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1767 self.assertEqual(1, len(a)) |
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1768 self.assertEqual('KNEE', a[0]['PatientMainDicomTags']['PatientName']) |
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1769 |
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1770 a = DoPost(_REMOTE, '/tools/find', { 'Level' : 'Study', |
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1771 'Expand' : True, |
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1772 'Query' : { 'StudyDate' : '20080820-' }}) |
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1773 self.assertEqual(0, len(a)) |
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1774 |
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1775 |
| 14 | 1776 |
| 1777 def test_rest_query_retrieve(self): | |
| 1778 self.assertEqual(0, len(DoGet(_REMOTE, '/patients'))) | |
| 1779 | |
| 1780 # Upload 8 instances | |
| 1781 for i in range(2): | |
| 1782 UploadInstance(_REMOTE, 'Brainix/Flair/IM-0001-000%d.dcm' % (i + 1)) | |
| 1783 UploadInstance(_REMOTE, 'Brainix/Epi/IM-0001-000%d.dcm' % (i + 1)) | |
| 1784 UploadInstance(_REMOTE, 'Knee/T1/IM-0001-000%d.dcm' % (i + 1)) | |
| 1785 UploadInstance(_REMOTE, 'Knee/T2/IM-0001-000%d.dcm' % (i + 1)) | |
| 1786 | |
| 1787 self.assertEqual(2, len(DoGet(_REMOTE, '/patients'))) | |
| 1788 for p in DoGet(_REMOTE, '/patients'): | |
| 1789 DoPost(_REMOTE, '/modalities/orthanctest/store', p) | |
| 1790 DoDelete(_REMOTE, '/patients/%s' % p) | |
| 1791 | |
| 1792 for q in DoGet(_REMOTE, '/queries'): | |
| 1793 DoDelete(_REMOTE, '/queries/%s' % q) | |
| 1794 | |
| 1795 self.assertEqual(0, len(DoGet(_REMOTE, '/patients'))) | |
| 1796 self.assertEqual(0, len(DoGet(_REMOTE, '/queries'))) | |
| 1797 a = DoPost(_REMOTE, '/modalities/orthanctest/query', { 'Level' : 'Series', | |
| 27 | 1798 'Query' : { |
| 1799 'PatientName' : '*NE*', | |
| 1800 'StudyDate' : '*', | |
| 1801 }})['ID'] | |
| 14 | 1802 self.assertEqual(1, len(DoGet(_REMOTE, '/queries'))) |
| 1803 | |
| 1804 b = DoGet(_REMOTE, '/queries/%s' % a) | |
| 1805 self.assertTrue('answers' in b) | |
| 1806 self.assertTrue('level' in b) | |
| 1807 self.assertTrue('modality' in b) | |
| 1808 self.assertTrue('query' in b) | |
| 1809 self.assertTrue('retrieve' in b) | |
| 1810 self.assertEqual('Series', DoGet(_REMOTE, '/queries/%s/level' % a)) | |
| 1811 self.assertEqual('orthanctest', DoGet(_REMOTE, '/queries/%s/modality' % a)) | |
| 1812 | |
| 1813 q = DoGet(_REMOTE, '/queries/%s/query?simplify' % a) | |
| 27 | 1814 self.assertEqual(2, len(q)) |
| 14 | 1815 self.assertTrue('PatientName' in q) |
| 27 | 1816 self.assertTrue('StudyDate' in q) |
| 14 | 1817 self.assertEqual('*NE*', q['PatientName']) |
| 27 | 1818 self.assertEqual('*', q['StudyDate']) |
| 14 | 1819 |
| 1820 self.assertEqual(2, len(DoGet(_REMOTE, '/queries/%s/answers' % a))) | |
| 1821 | |
| 1822 s = DoGet(_REMOTE, '/queries/%s/answers/0' % a) | |
| 1823 self.assertTrue('content' in s) | |
| 1824 self.assertTrue('retrieve' in s) | |
| 1825 | |
| 1826 s = DoGet(_REMOTE, '/queries/%s/answers/0/content?simplify' % a) | |
| 1827 self.assertEqual('887', s['PatientID']) | |
| 1828 self.assertEqual('2.16.840.1.113669.632.20.121711.10000160881', s['StudyInstanceUID']) | |
| 1829 | |
| 1830 self.assertEqual(0, len(DoGet(_REMOTE, '/patients'))) | |
| 1831 DoPost(_REMOTE, '/queries/%s/answers/0/retrieve' % a, 'ORTHANC') | |
| 1832 self.assertEqual(1, len(DoGet(_REMOTE, '/patients'))) | |
| 1833 self.assertEqual(1, len(DoGet(_REMOTE, '/studies'))) | |
| 1834 self.assertEqual(1, len(DoGet(_REMOTE, '/series'))) | |
| 1835 self.assertEqual(2, len(DoGet(_REMOTE, '/instances'))) | |
| 1836 | |
| 112 | 1837 DoPost(_REMOTE, '/queries/%s/answers/1/retrieve' % a, 'ORTHANC', 'application/json') # make sure the issue #36 is fixed (query/retrieve Rest API: /retrieve route shall accept application/json content type) |
| 14 | 1838 self.assertEqual(1, len(DoGet(_REMOTE, '/patients'))) |
| 1839 self.assertEqual(1, len(DoGet(_REMOTE, '/studies'))) | |
| 1840 self.assertEqual(2, len(DoGet(_REMOTE, '/series'))) | |
| 1841 self.assertEqual(4, len(DoGet(_REMOTE, '/instances'))) | |
| 1842 | |
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1843 # New in Orthanc 1.4.3 |
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1844 s = DoGet(_REMOTE, '/queries/%s/answers?expand&simplify' % a) |
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1845 self.assertEqual(2, len(s)) |
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1846 for i in range(2): |
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1847 self.assertEqual('SERIES', s[i]['QueryRetrieveLevel']) |
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1848 self.assertEqual('887', s[i]['PatientID']) |
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1849 self.assertEqual('2.16.840.1.113669.632.20.121711.10000160881', s[i]['StudyInstanceUID']) |
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1850 |
| 14 | 1851 DoDelete(_REMOTE, '/queries/%s' % a) |
| 1852 self.assertEqual(0, len(DoGet(_REMOTE, '/queries'))) | |
| 1853 | |
| 1854 | |
| 1855 def test_parent(self): | |
| 1856 u = UploadInstance(_REMOTE, 'DummyCT.dcm')['ID'] | |
| 1857 patient = '6816cb19-844d5aee-85245eba-28e841e6-2414fae2' | |
| 1858 study = 'b9c08539-26f93bde-c81ab0d7-bffaf2cb-a4d0bdd0' | |
| 1859 series = 'f2635388-f01d497a-15f7c06b-ad7dba06-c4c599fe' | |
| 1860 instance = '66a662ce-7430e543-bad44d47-0dc5a943-ec7a538d' | |
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1861 self.assertEqual(instance, u) |
| 14 | 1862 |
| 1863 a = DoGet(_REMOTE, '/studies/%s/patient' % study) | |
| 1864 self.assertEqual('Patient', a['Type']) | |
| 1865 self.assertEqual(patient, a['ID']) | |
| 1866 | |
| 1867 a = DoGet(_REMOTE, '/series/%s/patient' % series) | |
| 1868 self.assertEqual('Patient', a['Type']) | |
| 1869 self.assertEqual(patient, a['ID']) | |
| 1870 | |
| 1871 a = DoGet(_REMOTE, '/series/%s/study' % series) | |
| 1872 self.assertEqual('Study', a['Type']) | |
| 1873 self.assertEqual(study, a['ID']) | |
| 1874 | |
| 1875 a = DoGet(_REMOTE, '/instances/%s/patient' % instance) | |
| 1876 self.assertEqual('Patient', a['Type']) | |
| 1877 self.assertEqual(patient, a['ID']) | |
| 1878 | |
| 1879 a = DoGet(_REMOTE, '/instances/%s/study' % instance) | |
| 1880 self.assertEqual('Study', a['Type']) | |
| 1881 self.assertEqual(study, a['ID']) | |
| 1882 | |
| 1883 a = DoGet(_REMOTE, '/instances/%s/series' % instance) | |
| 1884 self.assertEqual('Series', a['Type']) | |
| 1885 self.assertEqual(series, a['ID']) | |
| 1886 | |
| 1887 | |
| 1888 def test_shanon(self): | |
| 1889 def Anonymize(instance, replacements = {}): | |
| 119 | 1890 return DoPost(_REMOTE, '/instances/%s/anonymize' % instance, { |
| 1891 'Replace' : replacements, | |
| 1892 'Force' : True, | |
| 1893 }, 'application/json') | |
| 14 | 1894 |
| 1895 self.assertEqual(0, len(DoGet(_REMOTE, '/instances'))) | |
| 1896 u = UploadInstance(_REMOTE, 'DummyCT.dcm')['ID'] | |
| 1897 self.assertEqual(1, len(DoGet(_REMOTE, '/instances'))) | |
| 1898 | |
| 1899 tags = [ 'PatientID', 'StudyInstanceUID', 'SeriesInstanceUID', 'SOPInstanceUID', 'DeidentificationMethod' ] | |
| 1900 ids = [ 'ozp00SjY2xG', | |
| 1901 '1.2.840.113619.2.176.2025.1499492.7391.1171285944.390', | |
| 1902 '1.2.840.113619.2.176.2025.1499492.7391.1171285944.394', | |
| 1903 '1.2.840.113619.2.176.2025.1499492.7040.1171286242.109' ] | |
| 1904 | |
| 1905 a = ExtractDicomTags(Anonymize(u), tags) | |
| 1906 for i in range(4): | |
| 1907 self.assertNotEqual(ids[i], a[i]) | |
| 1908 self.assertTrue(a[4].startswith('Orthanc')) | |
| 1909 | |
| 1910 a = ExtractDicomTags(Anonymize(u, { 'PatientName' : 'toto' }), tags) | |
| 1911 for i in range(4): | |
| 1912 self.assertNotEqual(ids[i], a[i]) | |
| 1913 self.assertFalse(a[4].startswith('Orthanc')) | |
| 1914 | |
| 1915 a = ExtractDicomTags(Anonymize(u, { 'SOPInstanceUID' : 'instance' }), tags) | |
| 1916 self.assertEqual('instance', a[3]) | |
| 1917 self.assertFalse(a[4].startswith('Orthanc')) | |
| 1918 | |
| 1919 a = ExtractDicomTags(Anonymize(u, { 'SeriesInstanceUID' : 'series' }), tags) | |
| 1920 self.assertEqual('series', a[2]) | |
| 1921 self.assertFalse(a[4].startswith('Orthanc')) | |
| 1922 | |
| 1923 a = ExtractDicomTags(Anonymize(u, { 'StudyInstanceUID' : 'study' }), tags) | |
| 1924 self.assertEqual('study', a[1]) | |
| 1925 self.assertFalse(a[4].startswith('Orthanc')) | |
| 1926 | |
| 1927 a = ExtractDicomTags(Anonymize(u, { 'PatientID' : 'patient' }), tags) | |
| 1928 self.assertEqual('patient', a[0]) | |
| 1929 self.assertFalse(a[4].startswith('Orthanc')) | |
| 1930 | |
| 1931 a = ExtractDicomTags(Anonymize(u, { 'PatientID' : 'patient', | |
| 1932 'StudyInstanceUID' : 'study', | |
| 1933 'SeriesInstanceUID' : 'series', | |
| 1934 'SOPInstanceUID' : 'instance' }), tags) | |
| 1935 self.assertEqual('patient', a[0]) | |
| 1936 self.assertFalse(a[4].startswith('Orthanc')) | |
| 1937 | |
| 1938 self.assertEqual(1, len(DoGet(_REMOTE, '/instances'))) | |
| 1939 | |
| 1940 | |
| 1941 def test_shanon_2(self): | |
| 1942 def Modify(instance, replacements = {}): | |
| 119 | 1943 return DoPost(_REMOTE, '/instances/%s/modify' % instance, { |
| 1944 'Replace' : replacements, | |
| 1945 'Force': True, | |
| 1946 }, 'application/json') | |
| 14 | 1947 |
| 1948 self.assertEqual(0, len(DoGet(_REMOTE, '/instances'))) | |
| 1949 u = UploadInstance(_REMOTE, 'DummyCT.dcm')['ID'] | |
| 1950 self.assertEqual(1, len(DoGet(_REMOTE, '/instances'))) | |
| 1951 | |
| 1952 tags = [ 'PatientID', 'StudyInstanceUID', 'SeriesInstanceUID', 'SOPInstanceUID', 'DeidentificationMethod' ] | |
| 1953 ids = [ 'ozp00SjY2xG', | |
| 1954 '1.2.840.113619.2.176.2025.1499492.7391.1171285944.390', | |
| 1955 '1.2.840.113619.2.176.2025.1499492.7391.1171285944.394', | |
| 1956 '1.2.840.113619.2.176.2025.1499492.7040.1171286242.109' ] | |
| 1957 | |
| 1958 a = ExtractDicomTags(Modify(u), tags) | |
| 1959 self.assertEqual(ids[0], a[0]) | |
| 1960 self.assertEqual(ids[1], a[1]) | |
| 1961 self.assertEqual(ids[2], a[2]) | |
| 1962 self.assertNotEqual(ids[3], a[3]) | |
| 1963 self.assertEqual(0, len(a[4])) | |
| 1964 | |
| 1965 a = ExtractDicomTags(Modify(u, { 'SOPInstanceUID' : 'instance' }), tags) | |
| 1966 self.assertEqual(ids[0], a[0]) | |
| 1967 self.assertEqual(ids[1], a[1]) | |
| 1968 self.assertEqual(ids[2], a[2]) | |
| 1969 self.assertEqual('instance', a[3]) | |
| 1970 | |
| 1971 a = ExtractDicomTags(Modify(u, { 'SeriesInstanceUID' : 'series' }), tags) | |
| 1972 self.assertEqual(ids[0], a[0]) | |
| 1973 self.assertEqual(ids[1], a[1]) | |
| 1974 self.assertEqual('series', a[2]) | |
| 1975 self.assertNotEqual(ids[3], a[3]) | |
| 1976 | |
| 1977 a = ExtractDicomTags(Modify(u, { 'StudyInstanceUID' : 'study' }), tags) | |
| 1978 self.assertEqual(ids[0], a[0]) | |
| 1979 self.assertEqual('study', a[1]) | |
| 1980 self.assertNotEqual(ids[2], a[2]) | |
| 1981 self.assertNotEqual(ids[3], a[3]) | |
| 1982 | |
| 1983 a = ExtractDicomTags(Modify(u, { 'PatientID' : 'patient' }), tags) | |
| 1984 self.assertEqual('patient', a[0]) | |
| 1985 self.assertNotEqual(ids[1], a[1]) | |
| 1986 self.assertNotEqual(ids[2], a[2]) | |
| 1987 self.assertNotEqual(ids[3], a[3]) | |
| 1988 | |
| 1989 a = ExtractDicomTags(Modify(u, { 'PatientID' : 'patient', | |
| 1990 'StudyInstanceUID' : 'study', | |
| 1991 'SeriesInstanceUID' : 'series', | |
| 1992 'SOPInstanceUID' : 'instance' }), tags) | |
| 1993 self.assertEqual('patient', a[0]) | |
| 1994 self.assertEqual('study', a[1]) | |
| 1995 self.assertEqual('series', a[2]) | |
| 1996 self.assertEqual('instance', a[3]) | |
| 1997 | |
| 1998 self.assertEqual(1, len(DoGet(_REMOTE, '/instances'))) | |
| 1999 | |
| 2000 | |
| 2001 def test_instances_tags(self): | |
| 2002 a = UploadInstance(_REMOTE, 'Knee/T1/IM-0001-0001.dcm')['ID'] | |
| 2003 b = UploadInstance(_REMOTE, 'Knee/T2/IM-0001-0001.dcm')['ID'] | |
| 2004 #a = UploadInstance(_REMOTE, 'Cardiac/MR.X.1.2.276.0.7230010.3.1.4.2831157719.2256.1336386937.676343')['ID'] | |
| 2005 #b = UploadInstance(_REMOTE, 'Cardiac/MR.X.1.2.276.0.7230010.3.1.4.2831157719.2256.1336386925.676329')['ID'] | |
| 2006 | |
| 2007 i = DoGet(_REMOTE, '/patients/%s/instances-tags?simplify' % DoGet(_REMOTE, '/patients')[0]) | |
| 2008 self.assertEqual(2, len(i)) | |
| 2009 self.assertEqual('887', i[i.keys()[0]]['PatientID']) | |
| 2010 self.assertEqual('887', i[i.keys()[1]]['PatientID']) | |
| 2011 | |
| 2012 i = DoGet(_REMOTE, '/patients/%s/instances-tags?simplify' % DoGet(_REMOTE, '/studies')[0]) | |
| 2013 self.assertEqual(2, len(i)) | |
| 2014 self.assertEqual('887', i[i.keys()[0]]['PatientID']) | |
| 2015 self.assertEqual('887', i[i.keys()[1]]['PatientID']) | |
| 2016 | |
| 2017 self.assertEqual(2, len(DoGet(_REMOTE, '/series'))) | |
| 2018 i = DoGet(_REMOTE, '/patients/%s/instances-tags?simplify' % DoGet(_REMOTE, '/series')[0]) | |
| 2019 self.assertEqual(1, len(i)) | |
| 2020 self.assertEqual('887', i[i.keys()[0]]['PatientID']) | |
| 2021 | |
| 2022 i = DoGet(_REMOTE, '/patients/%s/instances-tags?simplify' % DoGet(_REMOTE, '/series')[1]) | |
| 2023 self.assertEqual(1, len(i)) | |
| 2024 self.assertEqual('887', i[i.keys()[0]]['PatientID']) | |
| 2025 | |
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2026 i = DoGet(_REMOTE, '/patients/%s/instances-tags?short' % DoGet(_REMOTE, '/series')[1]) |
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2027 self.assertEqual(1, len(i)) |
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2028 self.assertEqual('887', i[i.keys()[0]]['0010,0020']) |
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2029 |
| 14 | 2030 |
| 2031 def test_lookup(self): | |
| 2032 a = DoPost(_REMOTE, '/tools/lookup', 'ozp00SjY2xG') | |
| 2033 self.assertEqual(0, len(a)) | |
| 2034 | |
| 2035 UploadInstance(_REMOTE, 'DummyCT.dcm') | |
| 2036 | |
| 2037 a = DoPost(_REMOTE, '/tools/lookup', 'ozp00SjY2xG') | |
| 2038 self.assertEqual(1, len(a)) | |
| 2039 self.assertEqual('Patient', a[0]['Type']) | |
| 2040 self.assertEqual('6816cb19-844d5aee-85245eba-28e841e6-2414fae2', a[0]['ID']) | |
| 2041 self.assertEqual('/patients/%s' % a[0]['ID'], a[0]['Path']) | |
| 2042 | |
| 2043 a = DoPost(_REMOTE, '/tools/lookup', '1.2.840.113619.2.176.2025.1499492.7391.1171285944.390') | |
| 2044 self.assertEqual(1, len(a)) | |
| 2045 self.assertEqual('Study', a[0]['Type']) | |
| 2046 self.assertEqual('b9c08539-26f93bde-c81ab0d7-bffaf2cb-a4d0bdd0', a[0]['ID']) | |
| 2047 self.assertEqual('/studies/%s' % a[0]['ID'], a[0]['Path']) | |
| 2048 | |
| 2049 a = DoPost(_REMOTE, '/tools/lookup', '1.2.840.113619.2.176.2025.1499492.7391.1171285944.394') | |
| 2050 self.assertEqual(1, len(a)) | |
| 2051 self.assertEqual('Series', a[0]['Type']) | |
| 2052 self.assertEqual('f2635388-f01d497a-15f7c06b-ad7dba06-c4c599fe', a[0]['ID']) | |
| 2053 self.assertEqual('/series/%s' % a[0]['ID'], a[0]['Path']) | |
| 2054 | |
| 2055 a = DoPost(_REMOTE, '/tools/lookup', '1.2.840.113619.2.176.2025.1499492.7040.1171286242.109') | |
| 2056 self.assertEqual(1, len(a)) | |
| 2057 self.assertEqual('Instance', a[0]['Type']) | |
| 2058 self.assertEqual('66a662ce-7430e543-bad44d47-0dc5a943-ec7a538d', a[0]['ID']) | |
| 2059 self.assertEqual('/instances/%s' % a[0]['ID'], a[0]['Path']) | |
| 2060 | |
| 2061 DropOrthanc(_REMOTE) | |
| 2062 a = DoPost(_REMOTE, '/tools/lookup', '3113719P') | |
| 2063 self.assertEqual(0, len(a)) | |
| 2064 | |
| 15 | 2065 |
| 2066 def test_autorouting(self): | |
| 2067 knee1 = 'Knee/T1/IM-0001-0001.dcm' | |
| 2068 knee2 = 'Knee/T2/IM-0001-0002.dcm' | |
| 2069 other = 'Brainix/Flair/IM-0001-0001.dcm' | |
| 2070 | |
| 2071 # Check that this version is >= 0.8.0 | |
| 2072 self.assertTrue(IsDefinedInLua(_REMOTE, '_InitializeJob')) | |
| 2073 self.assertTrue('orthanctest' in DoGet(_REMOTE, '/modalities')) | |
| 2074 | |
| 2075 UploadInstance(_REMOTE, knee1) | |
| 2076 self.assertEqual(0, len(DoGet(_LOCAL, '/instances'))) | |
| 2077 | |
| 2078 DropOrthanc(_REMOTE) | |
| 2079 DropOrthanc(_LOCAL) | |
| 174 | 2080 InstallLuaScriptFromPath(_REMOTE, 'Lua/Autorouting.lua') |
| 15 | 2081 UploadInstance(_REMOTE, knee1) |
| 2082 UploadInstance(_REMOTE, knee2) | |
| 2083 UploadInstance(_REMOTE, other) | |
| 2084 WaitEmpty(_REMOTE) | |
| 174 | 2085 UninstallLuaCallbacks(_REMOTE) |
| 15 | 2086 self.assertEqual(3, len(DoGet(_LOCAL, '/instances'))) |
| 2087 | |
| 2088 DropOrthanc(_REMOTE) | |
| 2089 DropOrthanc(_LOCAL) | |
| 174 | 2090 InstallLuaScriptFromPath(_REMOTE, 'Lua/AutoroutingConditional.lua') |
| 15 | 2091 UploadInstance(_REMOTE, knee1) |
| 2092 UploadInstance(_REMOTE, knee2) | |
| 2093 UploadInstance(_REMOTE, other) | |
| 2094 WaitEmpty(_REMOTE) | |
| 174 | 2095 UninstallLuaCallbacks(_REMOTE) |
| 15 | 2096 self.assertEqual(2, len(DoGet(_LOCAL, '/instances'))) |
| 2097 | |
| 2098 DropOrthanc(_REMOTE) | |
| 2099 DropOrthanc(_LOCAL) | |
| 174 | 2100 InstallLuaScriptFromPath(_REMOTE, 'Lua/AutoroutingModification.lua') |
| 15 | 2101 UploadInstance(_REMOTE, knee1) |
| 2102 WaitEmpty(_REMOTE) | |
| 174 | 2103 UninstallLuaCallbacks(_REMOTE) |
| 15 | 2104 i = DoGet(_LOCAL, '/instances') |
| 2105 self.assertEqual(1, len(i)) | |
| 2106 | |
| 2107 with tempfile.NamedTemporaryFile(delete = True) as f: | |
| 2108 f.write(DoGet(_LOCAL, '/instances/%s/file' % i[0])) | |
| 2109 f.flush() | |
| 45 | 2110 routed = subprocess.check_output([ FindExecutable('dcm2xml'), f.name ]) |
| 15 | 2111 self.assertEqual('My Medical Device', re.search('"StationName">(.*?)<', routed).group(1).strip()) |
| 2112 self.assertEqual(None, re.search('"MilitaryRank"', routed)) | |
| 2113 self.assertEqual(None, re.search('"0051,0010"', routed)) # A private tag | |
| 17 | 2114 |
| 2115 | |
| 2116 def test_storescu_rf(self): | |
| 2117 i = UploadInstance(_REMOTE, 'KarstenHilbertRF.dcm')['ID'] | |
| 2118 self.assertEqual(0, len(DoGet(_LOCAL, '/instances'))) | |
| 2119 j = DoPost(_REMOTE, '/modalities/orthanctest/store', str(i), 'text/plain') | |
| 2120 self.assertEqual(1, len(DoGet(_LOCAL, '/instances'))) | |
| 18 | 2121 |
| 2122 | |
| 2123 def test_anonymize_instance(self): | |
| 2124 def AnonymizeAndUpload(instanceId, parameters): | |
| 2125 return DoPost(_REMOTE, '/instances', DoPost(_REMOTE, '/instances/%s/anonymize' % instanceId, parameters, | |
| 2126 'application/json'), 'application/dicom')['ID'] | |
| 2127 | |
| 2128 def ModifyAndUpload(instanceId, parameters): | |
| 2129 return DoPost(_REMOTE, '/instances', DoPost(_REMOTE, '/instances/%s/modify' % instanceId, parameters, | |
| 2130 'application/json'), 'application/dicom')['ID'] | |
| 2131 | |
| 2132 a = UploadInstance(_REMOTE, 'PrivateMDNTags.dcm')['ID'] | |
| 2133 s1 = DoGet(_REMOTE, '/instances/%s/content/PatientName' % a) | |
| 2134 s2 = DoGet(_REMOTE, '/instances/%s/content/00e1-10c2' % a) # Some private tag | |
| 2135 s3 = DoGet(_REMOTE, '/instances/%s/content/StudyDescription' % a) | |
| 2136 s4 = DoGet(_REMOTE, '/instances/%s/content/SeriesDescription' % a) | |
| 2137 s5 = DoGet(_REMOTE, '/instances/%s/content/InstitutionName' % a) | |
| 2138 | |
| 2139 b = AnonymizeAndUpload(a, '{}') | |
| 2140 self.assertNotEqual(s1, DoGet(_REMOTE, '/instances/%s/content/PatientName' % b)) | |
| 2141 self.assertRaises(Exception, lambda: DoGet(_REMOTE, '/instances/%s/content/00e1-10c2' % b)) | |
| 2142 | |
| 2143 # Keep private tag (only OK since Orthanc 0.8.0) | |
| 2144 b = AnonymizeAndUpload(a, '{"Keep":["00e1-10c2"]}') | |
| 2145 self.assertNotEqual(s1, DoGet(_REMOTE, '/instances/%s/content/PatientName' % b)) | |
| 2146 self.assertEqual(s2, DoGet(_REMOTE, '/instances/%s/content/00e1-10c2' % b)) | |
| 2147 | |
| 2148 b = AnonymizeAndUpload(a, '{"Keep":["00e1,10c2","PatientName"]}') | |
| 2149 self.assertEqual(s1, DoGet(_REMOTE, '/instances/%s/content/PatientName' % b)) | |
| 2150 self.assertEqual(s2, DoGet(_REMOTE, '/instances/%s/content/00e1-10c2' % b)) | |
| 2151 | |
| 2152 b = AnonymizeAndUpload(a, '{"Keep":["PatientName"],"Replace":{"00e1,10c2":"Hello"}}') | |
| 2153 self.assertEqual(s1, DoGet(_REMOTE, '/instances/%s/content/PatientName' % b)) | |
| 2154 self.assertTrue(DoGet(_REMOTE, '/instances/%s/content/00e1-10c2' % b).startswith('Hello')) | |
| 2155 | |
| 2156 # Examples from the Wiki | |
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2157 b = AnonymizeAndUpload(a, '{"Replace":{"PatientName":"hello","0010-0020":"world"},"Keep":["StudyDescription", "SeriesDescription"],"KeepPrivateTags": true,"Force":true}') |
| 18 | 2158 self.assertEqual('hello', DoGet(_REMOTE, '/instances/%s/content/0010-0010' % b).strip()) |
| 2159 self.assertEqual('world', DoGet(_REMOTE, '/instances/%s/content/PatientID' % b).strip()) | |
| 2160 self.assertEqual(s3, DoGet(_REMOTE, '/instances/%s/content/0008,1030' % b)) | |
| 2161 self.assertEqual(s4, DoGet(_REMOTE, '/instances/%s/content/0008,103e' % b)) | |
| 2162 self.assertEqual(s4, DoGet(_REMOTE, '/instances/%s/content/0008-103E' % b)) | |
| 2163 self.assertEqual(s2, DoGet(_REMOTE, '/instances/%s/content/00e1-10c2' % b)) | |
| 2164 DoGet(_REMOTE, '/instances/%s/content/InstitutionName' % a) | |
| 2165 self.assertRaises(Exception, lambda: DoGet(_REMOTE, '/instances/%s/content/InstitutionName' % b)) | |
| 2166 | |
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2167 b = ModifyAndUpload(a, '{"Replace":{"PatientName":"hello","PatientID":"world"},"Remove":["InstitutionName"],"RemovePrivateTags": true,"Force":true}') |
| 18 | 2168 self.assertEqual('hello', DoGet(_REMOTE, '/instances/%s/content/0010-0010' % b).strip()) |
| 2169 self.assertEqual('world', DoGet(_REMOTE, '/instances/%s/content/PatientID' % b).strip()) | |
| 2170 self.assertEqual(s3, DoGet(_REMOTE, '/instances/%s/content/0008,1030' % b)) | |
| 2171 self.assertEqual(s4, DoGet(_REMOTE, '/instances/%s/content/0008,103e' % b)) | |
| 2172 self.assertRaises(Exception, lambda: DoGet(_REMOTE, '/instances/%s/content/00e1-10c2' % b)) | |
| 2173 self.assertRaises(Exception, lambda: DoGet(_REMOTE, '/instances/%s/content/InstitutionName' % b)) | |
| 2174 | |
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2175 b = ModifyAndUpload(a, '{"Replace":{"PatientName":"hello","PatientID":"world"},"Force":true}') |
| 18 | 2176 self.assertEqual('hello', DoGet(_REMOTE, '/instances/%s/content/0010-0010' % b).strip()) |
| 2177 self.assertEqual('world', DoGet(_REMOTE, '/instances/%s/content/PatientID' % b).strip()) | |
| 2178 self.assertEqual(s2, DoGet(_REMOTE, '/instances/%s/content/00e1,10c2' % b)) | |
| 2179 self.assertEqual(s3, DoGet(_REMOTE, '/instances/%s/content/0008,1030' % b)) | |
| 2180 self.assertEqual(s4, DoGet(_REMOTE, '/instances/%s/content/0008-103E' % b)) | |
| 2181 self.assertEqual(s5, DoGet(_REMOTE, '/instances/%s/content/InstitutionName' % b)) | |
| 2182 | |
| 2183 | |
| 2184 # Test modify non-existing | |
| 2185 i = DoPost(_REMOTE, '/tools/create-dicom', | |
| 2186 json.dumps({ | |
| 2187 'PatientName' : 'Jodogne', | |
| 2188 'Modality' : 'CT', | |
| 2189 }))['ID'] | |
| 2190 | |
| 2191 self.assertEqual('Jodogne', DoGet(_REMOTE, '/instances/%s/content/PatientName' % i).strip()) | |
| 2192 self.assertRaises(Exception, lambda: DoGet(_REMOTE, '/instances/%s/content/StudyDescription' % i)) | |
| 2193 self.assertEqual('CT', DoGet(_REMOTE, '/instances/%s/content/Modality' % i).strip()) | |
| 2194 | |
| 2195 b = ModifyAndUpload(i, '{"Replace":{"StudyDescription":"hello","Modality":"world"}}') | |
| 2196 self.assertEqual('Jodogne', DoGet(_REMOTE, '/instances/%s/content/PatientName' % b).strip()) | |
| 2197 self.assertEqual('hello', DoGet(_REMOTE, '/instances/%s/content/StudyDescription' % b).strip()) | |
| 2198 self.assertEqual('world', DoGet(_REMOTE, '/instances/%s/content/Modality' % b).strip()) | |
| 2199 | |
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2200 |
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2201 def test_incoming_jpeg(self): |
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2202 def storescu(image, acceptUnknownSopClassUid): |
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2203 if acceptUnknownSopClassUid: |
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2204 tmp = [ '-xf', GetDatabasePath('UnknownSopClassUid.cfg'), 'Default' ] |
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2205 else: |
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2206 tmp = [ '-xs' ] |
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2207 |
|
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2208 with open(os.devnull, 'w') as FNULL: |
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2209 subprocess.check_call([ FindExecutable('storescu') ] + tmp + |
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2210 [ _REMOTE['Server'], str(_REMOTE['DicomPort']), |
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2211 GetDatabasePath(image) ], |
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2212 stderr = FNULL) |
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2213 |
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2214 self.assertEqual(0, len(DoGet(_REMOTE, '/patients'))) |
| 174 | 2215 InstallLuaScriptFromPath(_REMOTE, 'Lua/TransferSyntaxDisable.lua') |
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2216 self.assertRaises(Exception, lambda: storescu('Knix/Loc/IM-0001-0001.dcm', False)) |
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2217 self.assertRaises(Exception, lambda: storescu('UnknownSopClassUid.dcm', True)) |
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2218 self.assertEqual(0, len(DoGet(_REMOTE, '/patients'))) |
| 174 | 2219 InstallLuaScriptFromPath(_REMOTE, 'Lua/TransferSyntaxEnable.lua') |
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2220 DoPost(_REMOTE, '/tools/execute-script', "print('All special transfer syntaxes are now accepted')") |
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2221 storescu('Knix/Loc/IM-0001-0001.dcm', False) |
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2222 storescu('UnknownSopClassUid.dcm', True) |
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2223 self.assertEqual(2, len(DoGet(_REMOTE, '/patients'))) |
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2224 |
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2225 |
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2226 def test_storescu_jpeg(self): |
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2227 self.assertEqual(0, len(DoGet(_REMOTE, '/exports')['Exports'])) |
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2228 |
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2229 knixStudy = 'b9c08539-26f93bde-c81ab0d7-bffaf2cb-a4d0bdd0' |
| 64 | 2230 i = UploadInstance(_REMOTE, 'Knix/Loc/IM-0001-0001.dcm')['ID'] |
| 2231 | |
| 2232 # This is JPEG lossless | |
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2233 self.assertEqual('1.2.840.10008.1.2.4.70', DoGet(_REMOTE, '/instances/%s/header' % i)['0002,0010']['Value']) |
| 64 | 2234 self.assertEqual('1.2.840.10008.1.2.4.70', DoGet(_REMOTE, '/instances/%s/header?simplify' % i)['TransferSyntaxUID']) |
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2235 self.assertEqual('1.2.840.10008.1.2.4.70', DoGet(_REMOTE, '/instances/%s/header?short' % i)['0002,0010']) |
| 64 | 2236 |
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2237 UploadInstance(_REMOTE, 'Knix/Loc/IM-0001-0002.dcm') |
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2238 UploadInstance(_REMOTE, 'Knix/Loc/IM-0001-0003.dcm') |
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2239 |
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2240 a = UploadInstance(_REMOTE, 'Brainix/Flair/IM-0001-0001.dcm')['ID'] |
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2241 b = UploadInstance(_REMOTE, 'ColorTestImageJ.dcm')['ID'] |
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2242 self.assertEqual(0, len(DoGet(_LOCAL, '/instances'))) |
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2243 DoPost(_REMOTE, '/modalities/orthanctest/store', [ knixStudy, a, b ]) |
|
2a29bcff60a7
tests of image decoding
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parents:
18
diff
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|
2244 self.assertEqual(5, len(DoGet(_LOCAL, '/instances'))) |
|
2a29bcff60a7
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parents:
18
diff
changeset
|
2245 |
|
2a29bcff60a7
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Sebastien Jodogne <s.jodogne@gmail.com>
parents:
18
diff
changeset
|
2246 self.assertEqual(3, len(DoGet(_REMOTE, '/exports')['Exports'])) |
|
2a29bcff60a7
tests of image decoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
18
diff
changeset
|
2247 |
|
2a29bcff60a7
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Sebastien Jodogne <s.jodogne@gmail.com>
parents:
18
diff
changeset
|
2248 DropOrthanc(_REMOTE) |
|
2a29bcff60a7
tests of image decoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
18
diff
changeset
|
2249 self.assertEqual(0, len(DoGet(_REMOTE, '/exports')['Exports'])) |
|
2a29bcff60a7
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Sebastien Jodogne <s.jodogne@gmail.com>
parents:
18
diff
changeset
|
2250 |
|
2a29bcff60a7
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Sebastien Jodogne <s.jodogne@gmail.com>
parents:
18
diff
changeset
|
2251 |
|
2a29bcff60a7
tests of image decoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
18
diff
changeset
|
2252 def test_pixel_data(self): |
|
2a29bcff60a7
tests of image decoding
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parents:
18
diff
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|
2253 jpeg = UploadInstance(_REMOTE, 'Knix/Loc/IM-0001-0001.dcm')['ID'] |
|
2a29bcff60a7
tests of image decoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
18
diff
changeset
|
2254 color = UploadInstance(_REMOTE, 'ColorTestImageJ.dcm')['ID'] |
|
2a29bcff60a7
tests of image decoding
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parents:
18
diff
changeset
|
2255 phenix = UploadInstance(_REMOTE, 'Phenix/IM-0001-0001.dcm')['ID'] |
|
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tests of image decoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
18
diff
changeset
|
2256 |
|
2a29bcff60a7
tests of image decoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
18
diff
changeset
|
2257 phenixSize = 358 * 512 * 2 |
|
2a29bcff60a7
tests of image decoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
18
diff
changeset
|
2258 colorSize = 1000 * 1000 * 3 |
|
2a29bcff60a7
tests of image decoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
18
diff
changeset
|
2259 jpegSize = 51918 |
|
2a29bcff60a7
tests of image decoding
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parents:
18
diff
changeset
|
2260 |
|
2a29bcff60a7
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Sebastien Jodogne <s.jodogne@gmail.com>
parents:
18
diff
changeset
|
2261 self.assertEqual(1, len(DoGet(_REMOTE, '/instances/%s/content/7fe0-0010' % phenix))) |
|
2a29bcff60a7
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parents:
18
diff
changeset
|
2262 self.assertEqual(1, len(DoGet(_REMOTE, '/instances/%s/content/7fe0-0010' % color))) |
|
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parents:
18
diff
changeset
|
2263 self.assertEqual(2, len(DoGet(_REMOTE, '/instances/%s/content/7fe0-0010' % jpeg))) |
|
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parents:
18
diff
changeset
|
2264 |
|
2a29bcff60a7
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Sebastien Jodogne <s.jodogne@gmail.com>
parents:
18
diff
changeset
|
2265 self.assertEqual(0, len(DoGet(_REMOTE, '/instances/%s/content/7fe0-0010/0' % jpeg))) |
|
2a29bcff60a7
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Sebastien Jodogne <s.jodogne@gmail.com>
parents:
18
diff
changeset
|
2266 self.assertEqual(jpegSize, len(DoGet(_REMOTE, '/instances/%s/content/7fe0-0010/1' % jpeg))) |
|
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Sebastien Jodogne <s.jodogne@gmail.com>
parents:
18
diff
changeset
|
2267 |
|
2a29bcff60a7
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Sebastien Jodogne <s.jodogne@gmail.com>
parents:
18
diff
changeset
|
2268 self.assertEqual(phenixSize, len(DoGet(_REMOTE, '/instances/%s/content/7fe0-0010/0' % phenix))) |
|
2a29bcff60a7
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Sebastien Jodogne <s.jodogne@gmail.com>
parents:
18
diff
changeset
|
2269 self.assertEqual(colorSize, len(DoGet(_REMOTE, '/instances/%s/content/7fe0-0010/0' % color))) |
|
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Sebastien Jodogne <s.jodogne@gmail.com>
parents:
18
diff
changeset
|
2270 |
|
2a29bcff60a7
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Sebastien Jodogne <s.jodogne@gmail.com>
parents:
18
diff
changeset
|
2271 |
|
2a29bcff60a7
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Sebastien Jodogne <s.jodogne@gmail.com>
parents:
18
diff
changeset
|
2272 def test_decode_brainix(self): |
|
2a29bcff60a7
tests of image decoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
18
diff
changeset
|
2273 brainix = [ |
|
2a29bcff60a7
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parents:
18
diff
changeset
|
2274 UploadInstance(_REMOTE, 'Brainix/Epi/IM-0001-0001.dcm')['ID'], # (*) |
|
2a29bcff60a7
tests of image decoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
18
diff
changeset
|
2275 UploadInstance(_REMOTE, 'Formats/JpegLossless.dcm')['ID'], # JPEG-LS, same as (*) (since Orthanc 0.7.6) |
|
2a29bcff60a7
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Sebastien Jodogne <s.jodogne@gmail.com>
parents:
18
diff
changeset
|
2276 UploadInstance(_REMOTE, 'Formats/Jpeg.dcm')['ID'], # JPEG, same as (*) (since Orthanc 0.7.6) |
|
2a29bcff60a7
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Sebastien Jodogne <s.jodogne@gmail.com>
parents:
18
diff
changeset
|
2277 ] |
|
2a29bcff60a7
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Sebastien Jodogne <s.jodogne@gmail.com>
parents:
18
diff
changeset
|
2278 h = '6fb11b932d535c2be04beabd99793ff8' |
|
2a29bcff60a7
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Sebastien Jodogne <s.jodogne@gmail.com>
parents:
18
diff
changeset
|
2279 maxValue = 426.0 |
|
2a29bcff60a7
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Sebastien Jodogne <s.jodogne@gmail.com>
parents:
18
diff
changeset
|
2280 |
|
2a29bcff60a7
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Sebastien Jodogne <s.jodogne@gmail.com>
parents:
18
diff
changeset
|
2281 truth = Image.open(GetDatabasePath('Formats/Brainix.png')) |
|
2a29bcff60a7
tests of image decoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
18
diff
changeset
|
2282 for i in brainix: |
|
2a29bcff60a7
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Sebastien Jodogne <s.jodogne@gmail.com>
parents:
18
diff
changeset
|
2283 self.AssertSameImages(truth.getdata(), '/instances/%s/image-int16' % i) |
|
2a29bcff60a7
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Sebastien Jodogne <s.jodogne@gmail.com>
parents:
18
diff
changeset
|
2284 self.AssertSameImages(truth.getdata(), '/instances/%s/image-uint16' % i) |
|
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Sebastien Jodogne <s.jodogne@gmail.com>
parents:
18
diff
changeset
|
2285 |
|
2a29bcff60a7
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Sebastien Jodogne <s.jodogne@gmail.com>
parents:
18
diff
changeset
|
2286 truth2 = map(lambda x: min(255, x), truth.getdata()) |
|
2a29bcff60a7
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Sebastien Jodogne <s.jodogne@gmail.com>
parents:
18
diff
changeset
|
2287 for i in brainix: |
|
2a29bcff60a7
tests of image decoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
18
diff
changeset
|
2288 self.AssertSameImages(truth2, '/instances/%s/image-uint8' % i) |
|
2a29bcff60a7
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Sebastien Jodogne <s.jodogne@gmail.com>
parents:
18
diff
changeset
|
2289 |
|
2a29bcff60a7
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Sebastien Jodogne <s.jodogne@gmail.com>
parents:
18
diff
changeset
|
2290 truth2 = map(lambda x: x * 255.0 / maxValue, truth.getdata()) |
|
2a29bcff60a7
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Sebastien Jodogne <s.jodogne@gmail.com>
parents:
18
diff
changeset
|
2291 for i in brainix: |
|
2a29bcff60a7
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Sebastien Jodogne <s.jodogne@gmail.com>
parents:
18
diff
changeset
|
2292 self.AssertSameImages(truth2, '/instances/%s/preview' % i) |
|
2a29bcff60a7
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Sebastien Jodogne <s.jodogne@gmail.com>
parents:
18
diff
changeset
|
2293 |
|
2a29bcff60a7
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Sebastien Jodogne <s.jodogne@gmail.com>
parents:
18
diff
changeset
|
2294 for i in brainix: |
|
2a29bcff60a7
tests of image decoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
18
diff
changeset
|
2295 self.assertEqual(h, ComputeMD5(DoGet(_REMOTE, '/instances/%s/matlab' % i))) |
|
2a29bcff60a7
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Sebastien Jodogne <s.jodogne@gmail.com>
parents:
18
diff
changeset
|
2296 |
|
2a29bcff60a7
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Sebastien Jodogne <s.jodogne@gmail.com>
parents:
18
diff
changeset
|
2297 |
|
2a29bcff60a7
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Sebastien Jodogne <s.jodogne@gmail.com>
parents:
18
diff
changeset
|
2298 def test_decode_color(self): |
|
2a29bcff60a7
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Sebastien Jodogne <s.jodogne@gmail.com>
parents:
18
diff
changeset
|
2299 imagej = UploadInstance(_REMOTE, 'ColorTestImageJ.dcm')['ID'] |
|
2a29bcff60a7
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Sebastien Jodogne <s.jodogne@gmail.com>
parents:
18
diff
changeset
|
2300 color = UploadInstance(_REMOTE, 'ColorTestMalaterre.dcm')['ID'] |
|
2a29bcff60a7
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Sebastien Jodogne <s.jodogne@gmail.com>
parents:
18
diff
changeset
|
2301 |
|
2a29bcff60a7
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Sebastien Jodogne <s.jodogne@gmail.com>
parents:
18
diff
changeset
|
2302 for i in [ imagej, color ]: |
|
2a29bcff60a7
tests of image decoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
18
diff
changeset
|
2303 for j in [ 'image-uint8', 'image-uint16', 'image-int16' ]: |
|
2a29bcff60a7
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Sebastien Jodogne <s.jodogne@gmail.com>
parents:
18
diff
changeset
|
2304 self.assertRaises(Exception, lambda: DoGet(_REMOTE, '/instances/%s/%s' % (i, j))) |
|
2a29bcff60a7
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Sebastien Jodogne <s.jodogne@gmail.com>
parents:
18
diff
changeset
|
2305 |
|
2a29bcff60a7
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Sebastien Jodogne <s.jodogne@gmail.com>
parents:
18
diff
changeset
|
2306 self.assertEqual('c14c687f7a1ea9fe022479fc87c67274', ComputeMD5(DoGet(_REMOTE, '/instances/%s/preview' % imagej))) |
|
2a29bcff60a7
tests of image decoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
18
diff
changeset
|
2307 self.assertEqual('a87d122918a56f803bcfe9d2586b9125', ComputeMD5(DoGet(_REMOTE, '/instances/%s/preview' % color))) |
|
2a29bcff60a7
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Sebastien Jodogne <s.jodogne@gmail.com>
parents:
18
diff
changeset
|
2308 |
|
2a29bcff60a7
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Sebastien Jodogne <s.jodogne@gmail.com>
parents:
18
diff
changeset
|
2309 self.assertEqual('30cc46bfa7aba77a40e4178f6184c25a', ComputeMD5(DoGet(_REMOTE, '/instances/%s/matlab' % imagej))) |
|
2a29bcff60a7
tests of image decoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
18
diff
changeset
|
2310 self.assertEqual('ff195005cef06b59666fd220a9b4cd9a', ComputeMD5(DoGet(_REMOTE, '/instances/%s/matlab' % color))) |
|
2a29bcff60a7
tests of image decoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
18
diff
changeset
|
2311 |
|
2a29bcff60a7
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Sebastien Jodogne <s.jodogne@gmail.com>
parents:
18
diff
changeset
|
2312 |
|
2a29bcff60a7
tests of image decoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
18
diff
changeset
|
2313 def test_decode_rf(self): |
|
2a29bcff60a7
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Sebastien Jodogne <s.jodogne@gmail.com>
parents:
18
diff
changeset
|
2314 rf = UploadInstance(_REMOTE, 'KarstenHilbertRF.dcm')['ID'] |
|
2a29bcff60a7
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Sebastien Jodogne <s.jodogne@gmail.com>
parents:
18
diff
changeset
|
2315 truth = Image.open(GetDatabasePath('Formats/KarstenHilbertRF.png')) |
|
2a29bcff60a7
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Sebastien Jodogne <s.jodogne@gmail.com>
parents:
18
diff
changeset
|
2316 |
|
2a29bcff60a7
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Sebastien Jodogne <s.jodogne@gmail.com>
parents:
18
diff
changeset
|
2317 self.AssertSameImages(truth.getdata(), '/instances/%s/image-uint8' % rf) |
|
2a29bcff60a7
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Sebastien Jodogne <s.jodogne@gmail.com>
parents:
18
diff
changeset
|
2318 self.AssertSameImages(truth.getdata(), '/instances/%s/image-uint16' % rf) |
|
2a29bcff60a7
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Sebastien Jodogne <s.jodogne@gmail.com>
parents:
18
diff
changeset
|
2319 self.AssertSameImages(truth.getdata(), '/instances/%s/image-int16' % rf) |
|
2a29bcff60a7
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Sebastien Jodogne <s.jodogne@gmail.com>
parents:
18
diff
changeset
|
2320 self.AssertSameImages(truth.getdata(), '/instances/%s/preview' % rf) |
|
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Sebastien Jodogne <s.jodogne@gmail.com>
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18
diff
changeset
|
2321 |
|
2a29bcff60a7
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Sebastien Jodogne <s.jodogne@gmail.com>
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18
diff
changeset
|
2322 self.assertEqual('42254d70efd2f4a1b8f3455909689f0e', ComputeMD5(DoGet(_REMOTE, '/instances/%s/matlab' % rf))) |
|
2a29bcff60a7
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Sebastien Jodogne <s.jodogne@gmail.com>
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18
diff
changeset
|
2323 |
|
2a29bcff60a7
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Sebastien Jodogne <s.jodogne@gmail.com>
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18
diff
changeset
|
2324 |
|
2a29bcff60a7
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Sebastien Jodogne <s.jodogne@gmail.com>
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18
diff
changeset
|
2325 def test_decode_multiframe(self): |
|
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18
diff
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|
2326 mf = UploadInstance(_REMOTE, 'Multiframe.dcm')['ID'] |
|
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18
diff
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|
2327 |
|
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18
diff
changeset
|
2328 # Test the first frame |
|
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18
diff
changeset
|
2329 truth = Image.open(GetDatabasePath('Formats/Multiframe0.png')) |
|
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Sebastien Jodogne <s.jodogne@gmail.com>
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18
diff
changeset
|
2330 self.AssertSameImages(truth.getdata(), '/instances/%s/image-uint8' % mf) |
|
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18
diff
changeset
|
2331 self.AssertSameImages(truth.getdata(), '/instances/%s/image-uint16' % mf) |
|
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18
diff
changeset
|
2332 self.AssertSameImages(truth.getdata(), '/instances/%s/image-int16' % mf) |
|
2a29bcff60a7
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Sebastien Jodogne <s.jodogne@gmail.com>
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18
diff
changeset
|
2333 self.AssertSameImages(truth.getdata(), '/instances/%s/preview' % mf) |
|
2a29bcff60a7
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Sebastien Jodogne <s.jodogne@gmail.com>
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18
diff
changeset
|
2334 self.assertEqual('9812b99d93bbcd4e7684ded089b5dfb3', ComputeMD5(DoGet(_REMOTE, '/instances/%s/matlab' % mf))) |
|
2a29bcff60a7
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Sebastien Jodogne <s.jodogne@gmail.com>
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18
diff
changeset
|
2335 |
|
2a29bcff60a7
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Sebastien Jodogne <s.jodogne@gmail.com>
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18
diff
changeset
|
2336 self.AssertSameImages(truth.getdata(), '/instances/%s/frames/0/image-uint16' % mf) |
|
2a29bcff60a7
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18
diff
changeset
|
2337 |
|
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diff
changeset
|
2338 # Test the last frame |
|
2a29bcff60a7
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18
diff
changeset
|
2339 truth = Image.open(GetDatabasePath('Formats/Multiframe75.png')) |
|
2a29bcff60a7
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Sebastien Jodogne <s.jodogne@gmail.com>
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18
diff
changeset
|
2340 self.AssertSameImages(truth.getdata(), '/instances/%s/frames/75/image-uint16' % mf) |
|
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18
diff
changeset
|
2341 |
|
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18
diff
changeset
|
2342 |
|
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Sebastien Jodogne <s.jodogne@gmail.com>
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18
diff
changeset
|
2343 def test_decode_signed(self): |
|
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Sebastien Jodogne <s.jodogne@gmail.com>
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18
diff
changeset
|
2344 signed = UploadInstance(_REMOTE, 'SignedCT.dcm')['ID'] |
|
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Sebastien Jodogne <s.jodogne@gmail.com>
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diff
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|
2345 minValue = -2000 |
|
2a29bcff60a7
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Sebastien Jodogne <s.jodogne@gmail.com>
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18
diff
changeset
|
2346 maxValue = 4042 |
|
2a29bcff60a7
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18
diff
changeset
|
2347 |
|
2a29bcff60a7
tests of image decoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
18
diff
changeset
|
2348 truth = Image.open(GetDatabasePath('Formats/SignedCT.png')) |
|
2a29bcff60a7
tests of image decoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
18
diff
changeset
|
2349 self.AssertSameImages(truth.getdata(), '/instances/%s/image-int16' % signed) |
|
2a29bcff60a7
tests of image decoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
18
diff
changeset
|
2350 |
|
2a29bcff60a7
tests of image decoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
18
diff
changeset
|
2351 truth2 = map(lambda x: 0 if x >= 32768 else x, truth.getdata()) |
|
2a29bcff60a7
tests of image decoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
18
diff
changeset
|
2352 self.AssertSameImages(truth2, '/instances/%s/image-uint16' % signed) |
|
2a29bcff60a7
tests of image decoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
18
diff
changeset
|
2353 |
|
2a29bcff60a7
tests of image decoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
18
diff
changeset
|
2354 truth3 = map(lambda x: 255 if x >= 256 else x, truth2) |
|
2a29bcff60a7
tests of image decoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
18
diff
changeset
|
2355 self.AssertSameImages(truth3, '/instances/%s/image-uint8' % signed) |
|
2a29bcff60a7
tests of image decoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
18
diff
changeset
|
2356 |
|
2a29bcff60a7
tests of image decoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
18
diff
changeset
|
2357 tmp = map(lambda x: x - 65536 if x >= 32768 else x, truth.getdata()) |
|
2a29bcff60a7
tests of image decoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
18
diff
changeset
|
2358 tmp = map(lambda x: (255.0 * (x - minValue)) / (maxValue - minValue), tmp) |
|
2a29bcff60a7
tests of image decoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
18
diff
changeset
|
2359 self.AssertSameImages(tmp, '/instances/%s/preview' % signed) |
|
2a29bcff60a7
tests of image decoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
18
diff
changeset
|
2360 |
|
2a29bcff60a7
tests of image decoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
18
diff
changeset
|
2361 self.assertEqual('b57e6c872a3da50877c7da689b03a444', ComputeMD5(DoGet(_REMOTE, '/instances/%s/matlab' % signed))) |
| 22 | 2362 |
| 2363 | |
|
46
85b2e36ed392
explicit GoogleCode source
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
45
diff
changeset
|
2364 def test_googlecode_issue_32(self): |
|
92
dbcbffb889da
test_findscu_encoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
89
diff
changeset
|
2365 self.assertRaises(Exception, lambda: DoPut(_REMOTE, '/tools/default-encoding', 'nope')) |
|
dbcbffb889da
test_findscu_encoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
89
diff
changeset
|
2366 self.assertEqual('Windows1251', DoPut(_REMOTE, '/tools/default-encoding', 'Windows1251')) |
|
dbcbffb889da
test_findscu_encoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
89
diff
changeset
|
2367 self.assertEqual('Windows1251', DoGet(_REMOTE, '/tools/default-encoding')) |
|
dbcbffb889da
test_findscu_encoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
89
diff
changeset
|
2368 |
| 22 | 2369 f = UploadInstance(_REMOTE, 'Issue32.dcm')['ID'] |
| 2370 tags = DoGet(_REMOTE, '/instances/%s/tags?simplify' % f) | |
| 2371 self.assertEqual(u'Рентгенография', tags['SeriesDescription']) | |
| 2372 self.assertEqual(u'Таз', tags['BodyPartExamined']) | |
| 2373 self.assertEqual(u'Прямая', tags['ViewPosition']) | |
| 2374 | |
|
92
dbcbffb889da
test_findscu_encoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
89
diff
changeset
|
2375 # Replay the same test using Latin1 as default encoding: This must fail |
|
dbcbffb889da
test_findscu_encoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
89
diff
changeset
|
2376 self.assertEqual('Latin1', DoPut(_REMOTE, '/tools/default-encoding', 'Latin1')) |
|
dbcbffb889da
test_findscu_encoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
89
diff
changeset
|
2377 |
|
dbcbffb889da
test_findscu_encoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
89
diff
changeset
|
2378 DoDelete(_REMOTE, '/instances/%s' % f) |
|
dbcbffb889da
test_findscu_encoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
89
diff
changeset
|
2379 f = UploadInstance(_REMOTE, 'Issue32.dcm')['ID'] |
|
dbcbffb889da
test_findscu_encoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
89
diff
changeset
|
2380 tags = DoGet(_REMOTE, '/instances/%s/tags?simplify' % f) |
|
dbcbffb889da
test_findscu_encoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
89
diff
changeset
|
2381 self.assertNotEqual(u'Рентгенография', tags['SeriesDescription']) |
|
dbcbffb889da
test_findscu_encoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
89
diff
changeset
|
2382 |
| 314 | 2383 # Back to UTF-8 |
| 2384 self.assertEqual('Utf8', DoPut(_REMOTE, '/tools/default-encoding', 'Utf8')) | |
| 2385 | |
|
92
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Sebastien Jodogne <s.jodogne@gmail.com>
parents:
89
diff
changeset
|
2386 |
| 22 | 2387 def test_encodings(self): |
| 23 | 2388 # Latin-1 (ISO_IR 100) |
| 22 | 2389 brainix = UploadInstance(_REMOTE, 'Brainix/Epi/IM-0001-0001.dcm')['ID'] |
| 2390 tags = DoGet(_REMOTE, '/instances/%s/tags?simplify' % brainix) | |
| 2391 self.assertEqual(u'IRM cérébrale, neuro-crâne', tags['StudyDescription']) | |
| 23 | 2392 |
| 2393 # Latin-2 (ISO_IR 101) | |
| 2394 a = UploadInstance(_REMOTE, 'MarekLatin2.dcm')['ID'] | |
| 2395 i = DoGet(_REMOTE, '/instances/%s/simplified-tags' % a) | |
| 2396 # dcm2xml MarekLatin2.dcm | iconv -f latin2 -t utf-8 | xmllint --format - | |
| 2397 self.assertEqual('Imię i Nazwisko osoby opisującej', | |
| 2398 i['ContentSequence'][4]['ConceptNameCodeSequence'][0]['CodeMeaning'].encode('utf-8')) | |
| 2399 | |
|
26
040f6ef1394a
test_storescu_custom_aet
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
23
diff
changeset
|
2400 |
|
040f6ef1394a
test_storescu_custom_aet
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
23
diff
changeset
|
2401 def test_storescu_custom_aet(self): |
|
040f6ef1394a
test_storescu_custom_aet
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
23
diff
changeset
|
2402 # This tests a feature introduced in Orthanc 0.9.1: "Custom |
|
040f6ef1394a
test_storescu_custom_aet
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
23
diff
changeset
|
2403 # setting of the local AET during C-Store SCU (both in Lua and |
|
040f6ef1394a
test_storescu_custom_aet
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
23
diff
changeset
|
2404 # in the REST API)." |
|
040f6ef1394a
test_storescu_custom_aet
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
23
diff
changeset
|
2405 # https://groups.google.com/forum/#!msg/orthanc-users/o5qMULformU/wZjW2iSaMcAJ |
|
040f6ef1394a
test_storescu_custom_aet
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
23
diff
changeset
|
2406 |
|
040f6ef1394a
test_storescu_custom_aet
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
23
diff
changeset
|
2407 self.assertEqual(0, len(DoGet(_LOCAL, '/patients'))) |
|
040f6ef1394a
test_storescu_custom_aet
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
23
diff
changeset
|
2408 |
|
040f6ef1394a
test_storescu_custom_aet
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
23
diff
changeset
|
2409 a = UploadInstance(_REMOTE, 'Knee/T1/IM-0001-0001.dcm') |
|
040f6ef1394a
test_storescu_custom_aet
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
23
diff
changeset
|
2410 b = UploadInstance(_REMOTE, 'Knee/T1/IM-0001-0002.dcm') |
|
040f6ef1394a
test_storescu_custom_aet
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
23
diff
changeset
|
2411 c = UploadInstance(_REMOTE, 'Knee/T1/IM-0001-0003.dcm') |
|
040f6ef1394a
test_storescu_custom_aet
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
23
diff
changeset
|
2412 |
|
040f6ef1394a
test_storescu_custom_aet
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
23
diff
changeset
|
2413 j = DoPost(_REMOTE, '/modalities/orthanctest/store', { |
|
040f6ef1394a
test_storescu_custom_aet
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
23
diff
changeset
|
2414 'LocalAet' : 'YOP', |
|
040f6ef1394a
test_storescu_custom_aet
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
23
diff
changeset
|
2415 'Resources' : [ a['ID'], b['ID'] ] |
|
040f6ef1394a
test_storescu_custom_aet
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
23
diff
changeset
|
2416 }) |
|
040f6ef1394a
test_storescu_custom_aet
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
23
diff
changeset
|
2417 |
|
040f6ef1394a
test_storescu_custom_aet
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
23
diff
changeset
|
2418 self.assertEqual(2, len(DoGet(_LOCAL, '/instances'))) |
|
040f6ef1394a
test_storescu_custom_aet
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
23
diff
changeset
|
2419 self.assertEqual('YOP', DoGet(_LOCAL, '/instances/%s/metadata/RemoteAET' % a['ID'])) |
|
040f6ef1394a
test_storescu_custom_aet
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
23
diff
changeset
|
2420 |
|
040f6ef1394a
test_storescu_custom_aet
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
23
diff
changeset
|
2421 DropOrthanc(_LOCAL) |
|
040f6ef1394a
test_storescu_custom_aet
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
23
diff
changeset
|
2422 self.assertEqual(0, len(DoGet(_LOCAL, '/instances'))) |
|
040f6ef1394a
test_storescu_custom_aet
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
23
diff
changeset
|
2423 |
|
040f6ef1394a
test_storescu_custom_aet
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
23
diff
changeset
|
2424 j = DoPost(_REMOTE, '/modalities/orthanctest/store', { |
|
040f6ef1394a
test_storescu_custom_aet
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
23
diff
changeset
|
2425 'Resources' : [ c['ID'] ] |
|
040f6ef1394a
test_storescu_custom_aet
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
23
diff
changeset
|
2426 }) |
|
040f6ef1394a
test_storescu_custom_aet
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
23
diff
changeset
|
2427 |
|
040f6ef1394a
test_storescu_custom_aet
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
23
diff
changeset
|
2428 self.assertEqual(1, len(DoGet(_LOCAL, '/instances'))) |
|
040f6ef1394a
test_storescu_custom_aet
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
23
diff
changeset
|
2429 self.assertEqual('ORTHANC', DoGet(_LOCAL, '/instances/%s/metadata/RemoteAET' % c['ID'])) |
|
040f6ef1394a
test_storescu_custom_aet
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
23
diff
changeset
|
2430 |
|
040f6ef1394a
test_storescu_custom_aet
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
23
diff
changeset
|
2431 DropOrthanc(_REMOTE) |
|
040f6ef1394a
test_storescu_custom_aet
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
23
diff
changeset
|
2432 DropOrthanc(_LOCAL) |
|
040f6ef1394a
test_storescu_custom_aet
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
23
diff
changeset
|
2433 |
| 174 | 2434 InstallLuaScriptFromPath(_REMOTE, 'Lua/AutoroutingChangeAet.lua') |
|
26
040f6ef1394a
test_storescu_custom_aet
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
23
diff
changeset
|
2435 DoPost(_REMOTE, '/tools/execute-script', 'aet = "HELLO"', 'application/lua') |
|
040f6ef1394a
test_storescu_custom_aet
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
23
diff
changeset
|
2436 |
|
040f6ef1394a
test_storescu_custom_aet
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
23
diff
changeset
|
2437 self.assertEqual(0, len(DoGet(_LOCAL, '/instances'))) |
|
040f6ef1394a
test_storescu_custom_aet
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
23
diff
changeset
|
2438 UploadInstance(_REMOTE, 'Knee/T1/IM-0001-0001.dcm') |
|
040f6ef1394a
test_storescu_custom_aet
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
23
diff
changeset
|
2439 WaitEmpty(_REMOTE) |
|
040f6ef1394a
test_storescu_custom_aet
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
23
diff
changeset
|
2440 self.assertEqual(1, len(DoGet(_LOCAL, '/instances'))) |
|
040f6ef1394a
test_storescu_custom_aet
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
23
diff
changeset
|
2441 self.assertEqual('HELLO', DoGet(_LOCAL, '/instances/%s/metadata/RemoteAET' % a['ID'])) |
|
040f6ef1394a
test_storescu_custom_aet
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
23
diff
changeset
|
2442 |
|
040f6ef1394a
test_storescu_custom_aet
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
23
diff
changeset
|
2443 DoPost(_REMOTE, '/tools/execute-script', 'aet = nill', 'application/lua') |
|
040f6ef1394a
test_storescu_custom_aet
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
23
diff
changeset
|
2444 UploadInstance(_REMOTE, 'Knee/T1/IM-0001-0002.dcm') |
|
040f6ef1394a
test_storescu_custom_aet
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
23
diff
changeset
|
2445 WaitEmpty(_REMOTE) |
|
040f6ef1394a
test_storescu_custom_aet
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
23
diff
changeset
|
2446 self.assertEqual(2, len(DoGet(_LOCAL, '/instances'))) |
|
040f6ef1394a
test_storescu_custom_aet
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
23
diff
changeset
|
2447 self.assertEqual('ORTHANC', DoGet(_LOCAL, '/instances/%s/metadata/RemoteAET' % b['ID'])) |
|
34
1047d7bc5210
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diff
changeset
|
2448 |
|
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Sebastien Jodogne <s.jodogne@gmail.com>
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diff
changeset
|
2449 def test_resources_since_limit(self): |
|
1047d7bc5210
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diff
changeset
|
2450 # Upload 16 instances |
|
1047d7bc5210
test limit and since arguments while retrieving DICOM resources in the REST API
Sebastien Jodogne <s.jodogne@gmail.com>
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diff
changeset
|
2451 for i in range(4): |
|
1047d7bc5210
test limit and since arguments while retrieving DICOM resources in the REST API
Sebastien Jodogne <s.jodogne@gmail.com>
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diff
changeset
|
2452 UploadInstance(_REMOTE, 'Brainix/Flair/IM-0001-000%d.dcm' % (i + 1)) |
|
1047d7bc5210
test limit and since arguments while retrieving DICOM resources in the REST API
Sebastien Jodogne <s.jodogne@gmail.com>
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diff
changeset
|
2453 UploadInstance(_REMOTE, 'Brainix/Epi/IM-0001-000%d.dcm' % (i + 1)) |
|
1047d7bc5210
test limit and since arguments while retrieving DICOM resources in the REST API
Sebastien Jodogne <s.jodogne@gmail.com>
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diff
changeset
|
2454 UploadInstance(_REMOTE, 'Knee/T1/IM-0001-000%d.dcm' % (i + 1)) |
|
1047d7bc5210
test limit and since arguments while retrieving DICOM resources in the REST API
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diff
changeset
|
2455 UploadInstance(_REMOTE, 'Knee/T2/IM-0001-000%d.dcm' % (i + 1)) |
|
1047d7bc5210
test limit and since arguments while retrieving DICOM resources in the REST API
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diff
changeset
|
2456 |
|
1047d7bc5210
test limit and since arguments while retrieving DICOM resources in the REST API
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diff
changeset
|
2457 self.assertEqual(2, len(DoGet(_REMOTE, '/patients'))) |
|
1047d7bc5210
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diff
changeset
|
2458 self.assertEqual(2, len(DoGet(_REMOTE, '/studies'))) |
|
1047d7bc5210
test limit and since arguments while retrieving DICOM resources in the REST API
Sebastien Jodogne <s.jodogne@gmail.com>
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diff
changeset
|
2459 self.assertEqual(4, len(DoGet(_REMOTE, '/series'))) |
|
1047d7bc5210
test limit and since arguments while retrieving DICOM resources in the REST API
Sebastien Jodogne <s.jodogne@gmail.com>
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diff
changeset
|
2460 self.assertEqual(16, len(DoGet(_REMOTE, '/instances'))) |
|
1047d7bc5210
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Sebastien Jodogne <s.jodogne@gmail.com>
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diff
changeset
|
2461 |
|
1047d7bc5210
test limit and since arguments while retrieving DICOM resources in the REST API
Sebastien Jodogne <s.jodogne@gmail.com>
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diff
changeset
|
2462 self.assertRaises(Exception, lambda: DoGet(_REMOTE, '/patients&since=10' % i)) |
|
1047d7bc5210
test limit and since arguments while retrieving DICOM resources in the REST API
Sebastien Jodogne <s.jodogne@gmail.com>
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diff
changeset
|
2463 self.assertRaises(Exception, lambda: DoGet(_REMOTE, '/patients&limit=10' % i)) |
|
1047d7bc5210
test limit and since arguments while retrieving DICOM resources in the REST API
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
changeset
|
2464 |
|
1047d7bc5210
test limit and since arguments while retrieving DICOM resources in the REST API
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2465 self.assertEqual(0, len(DoGet(_REMOTE, '/patients?since=0&limit=0'))) |
|
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diff
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|
2466 self.assertEqual(2, len(DoGet(_REMOTE, '/patients?since=0&limit=100'))) |
|
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diff
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|
2467 self.assertEqual(2, len(DoGet(_REMOTE, '/studies?since=0&limit=100'))) |
|
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diff
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|
2468 self.assertEqual(4, len(DoGet(_REMOTE, '/series?since=0&limit=100'))) |
|
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diff
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|
2469 self.assertEqual(16, len(DoGet(_REMOTE, '/instances?since=0&limit=100'))) |
|
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diff
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|
2470 self.assertEqual(1, len(DoGet(_REMOTE, '/patients?since=1&limit=100'))) |
|
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|
2471 self.assertEqual(0, len(DoGet(_REMOTE, '/patients?since=2&limit=100'))) |
|
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diff
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|
2472 self.assertEqual(0, len(DoGet(_REMOTE, '/patients?since=3&limit=100'))) |
|
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diff
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|
2473 self.assertEqual(1, len(DoGet(_REMOTE, '/studies?since=1&limit=100'))) |
|
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diff
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|
2474 self.assertEqual(3, len(DoGet(_REMOTE, '/series?since=1&limit=100'))) |
|
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diff
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|
2475 self.assertEqual(2, len(DoGet(_REMOTE, '/series?since=2&limit=100'))) |
|
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|
2476 self.assertEqual(1, len(DoGet(_REMOTE, '/series?since=3&limit=100'))) |
|
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|
2477 self.assertEqual(0, len(DoGet(_REMOTE, '/series?since=4&limit=100'))) |
|
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|
2478 self.assertEqual(0, len(DoGet(_REMOTE, '/series?since=100&limit=100'))) |
|
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|
2479 self.assertEqual(15, len(DoGet(_REMOTE, '/instances?since=1&limit=100'))) |
|
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|
2480 |
|
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diff
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|
2481 for limit in [ 1, 2, 3, 7, 16, 17 ]: |
|
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diff
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|
2482 s = {} |
|
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|
2483 since = 0 |
|
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diff
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|
2484 while True: |
|
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diff
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|
2485 t = DoGet(_REMOTE, '/instances?since=%d&limit=%d' % (since, limit)) |
|
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diff
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|
2486 if len(t) == 0: |
|
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diff
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|
2487 break |
|
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diff
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|
2488 |
|
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diff
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|
2489 since += len(t) |
|
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diff
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|
2490 for i in t: |
|
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diff
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|
2491 s[i] = None |
|
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diff
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|
2492 |
|
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diff
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|
2493 self.assertEqual(16, len(s)) |
|
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diff
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|
2494 for instance in DoGet(_REMOTE, '/instances'): |
|
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|
2495 self.assertTrue(instance in s) |
| 36 | 2496 |
| 2497 | |
| 2498 def test_create_pdf(self): | |
| 2499 # Upload 4 instances | |
| 2500 brainixInstance = UploadInstance(_REMOTE, 'Brainix/Flair/IM-0001-0001.dcm')['ID'] | |
| 2501 UploadInstance(_REMOTE, 'Brainix/Epi/IM-0001-0001.dcm') | |
| 2502 UploadInstance(_REMOTE, 'Knee/T1/IM-0001-0001.dcm') | |
| 2503 UploadInstance(_REMOTE, 'Knee/T2/IM-0001-0001.dcm') | |
| 2504 | |
| 2505 brainixPatient = '16738bc3-e47ed42a-43ce044c-a3414a45-cb069bd0' | |
| 2506 brainixStudy = '27f7126f-4f66fb14-03f4081b-f9341db2-53925988' | |
| 2507 brainixEpi = '2ac1316d-3e432022-62eabff2-c59f5475-9b1ac3f8' | |
| 2508 | |
| 2509 with open(GetDatabasePath('HelloWorld.pdf'), 'rb') as f: | |
| 2510 pdf = f.read() | |
| 2511 | |
| 2512 i = DoPost(_REMOTE, '/tools/create-dicom', | |
| 2513 json.dumps({ | |
| 2514 'Tags' : { | |
| 2515 'PatientName' : 'Jodogne', | |
| 2516 'Modality' : 'CT', | |
| 2517 }, | |
| 2518 'Content' : 'data:application/pdf;base64,' + base64.b64encode(pdf) | |
| 2519 })) | |
| 2520 | |
| 2521 self.assertEqual('Jodogne', DoGet(_REMOTE, '/instances/%s/content/PatientName' % i['ID']).strip()) | |
| 2522 self.assertEqual('OT', DoGet(_REMOTE, '/instances/%s/content/Modality' % i['ID']).strip()) | |
| 2523 | |
| 2524 b = DoGet(_REMOTE, '/instances/%s/content/0042-0011' % i['ID']) | |
| 2525 self.assertEqual(len(b), len(pdf) + 1) | |
| 2526 self.assertEqual(ComputeMD5(b), ComputeMD5(pdf + '\0')) | |
| 2527 | |
| 2528 self.assertRaises(Exception, lambda: DoPost(_REMOTE, '/tools/create-dicom', | |
| 2529 json.dumps({ | |
| 2530 'Parent' : brainixPatient, | |
| 2531 'Tags' : { | |
| 2532 'PatientName' : 'Jodogne', | |
| 2533 } | |
| 2534 }))) | |
| 2535 | |
| 2536 i = DoPost(_REMOTE, '/tools/create-dicom', | |
| 2537 json.dumps({ | |
| 2538 'Parent' : brainixPatient, | |
| 2539 'Tags' : { 'StudyDescription' : 'PDF^Patient' }, | |
| 2540 'Content' : 'data:application/pdf;base64,' + base64.b64encode(pdf) | |
| 2541 })) | |
| 2542 | |
| 2543 self.assertEqual(brainixPatient, DoGet(_REMOTE, '/instances/%s/patient' % i['ID'])['ID']) | |
| 2544 | |
| 2545 i = DoPost(_REMOTE, '/tools/create-dicom', | |
| 2546 json.dumps({ | |
| 2547 'Parent' : brainixStudy, | |
| 2548 'Tags' : { 'SeriesDescription' : 'PDF^Study' }, | |
| 2549 'Content' : 'data:application/pdf;base64,' + base64.b64encode(pdf) | |
| 2550 })) | |
| 2551 | |
| 2552 self.assertEqual(brainixStudy, DoGet(_REMOTE, '/instances/%s/study' % i['ID'])['ID']) | |
| 2553 | |
| 2554 i = DoPost(_REMOTE, '/tools/create-dicom', | |
| 2555 json.dumps({ | |
| 2556 'Parent' : brainixEpi, | |
| 37 | 2557 'Tags' : { 'SpecificCharacterSet' : 'ISO_IR 13' }, |
| 36 | 2558 'Content' : 'data:application/pdf;base64,' + base64.b64encode(pdf) |
| 2559 })) | |
| 2560 | |
| 2561 self.assertEqual(brainixEpi, DoGet(_REMOTE, '/instances/%s/series' % i['ID'])['ID']) | |
| 2562 | |
| 2563 b = DoGet(_REMOTE, '/instances/%s/pdf' % i['ID']) | |
| 2564 self.assertEqual(len(b), len(pdf)) | |
| 2565 self.assertEqual(ComputeMD5(b), ComputeMD5(pdf)) | |
| 2566 | |
| 2567 self.assertRaises(Exception, lambda: DoGet(_REMOTE, '/instances/%s/pdf' % brainixInstance)) | |
| 38 | 2568 |
| 2569 | |
| 2570 def test_create_series(self): | |
| 2571 i = DoPost(_REMOTE, '/tools/create-dicom', | |
| 2572 json.dumps({ | |
| 2573 'Tags' : { | |
| 40 | 2574 'SpecificCharacterSet' : 'ISO_IR 100', |
| 2575 'PatientName' : 'Sébastien Jodogne', | |
| 38 | 2576 'Modality' : 'CT', |
| 2577 }, | |
| 2578 'Content' : [ | |
| 40 | 2579 { |
| 2580 'Content': 'data:image/png;base64,iVBORw0KGgoAAAANSUhEUgAAAAUAAAAFCAYAAACNbyblAAAAHElEQVQI12P4//8/w38GIAXDIBKE0DHxgljNBAAO9TXL0Y4OHwAAAABJRU5ErkJggg==', # red dot in RGBA | |
| 2581 'Tags' : { 'ImageComments' : 'Tutu' } | |
| 2582 }, | |
| 38 | 2583 'data:image/png;base64,iVBORw0KGgoAAAANSUhEUgAAABAAAAAQCAYAAAAf8/9hAAAAoUlEQVQ4jZ2SWw3EIBREjwUsYAELa2EtoAULFUCyXAtroRZqoRbox254BdLC/DZnZjoXWJFgCDg8egW2CBEhEnDzyRk+Ecxz2KP/0AL8S99T+jQccAVs22qKwAuPuq0uyNg9cPLh3am+pe/dkHLZtqJHj6vXJrZ7nvzvxxgemXgUwnGfXqpee09mUwp8m022OYP6bLF7mVuVe0y/umxinsAXRd9z0k1ubWsAAAAASUVORK5CYII=', |
| 2584 ] | |
| 2585 })) | |
| 2586 | |
| 2587 s = DoGet(_REMOTE, i['Path']) | |
| 2588 self.assertEqual('Series', s['Type']) | |
| 2589 self.assertEqual(s['ID'], i['ID']) | |
| 2590 self.assertEqual(2, len(s['Instances'])) | |
| 39 | 2591 self.assertEqual(2, s['ExpectedNumberOfInstances']) |
| 2592 self.assertEqual('Complete', s['Status']) | |
| 40 | 2593 |
| 2594 a = DoGet(_REMOTE, '/instances/%s/tags?simplify' % s['Instances'][0]) | |
| 2595 b = DoGet(_REMOTE, '/instances/%s/tags?simplify' % s['Instances'][1]) | |
| 2596 self.assertTrue('ImageComments' in a or 'ImageComments' in b) | |
| 2597 if 'ImageComments' in a: | |
| 2598 self.assertEqual('Tutu', a['ImageComments']) | |
| 2599 else: | |
| 2600 self.assertEqual('Tutu', b['ImageComments']) | |
| 2601 | |
| 2602 patient = DoGet(_REMOTE, '/instances/%s/patient' % s['Instances'][0]) | |
| 2603 self.assertEqual(patient['MainDicomTags']['PatientName'].encode('utf-8'), | |
| 2604 'Sébastien Jodogne') | |
| 47 | 2605 |
| 2606 | |
| 2607 def test_create_binary(self): | |
| 2608 binary = ''.join(map(chr, range(256))) | |
| 2609 encoded = 'data:application/octet-stream;base64,' + base64.b64encode(binary) | |
| 2610 tags = { | |
| 2611 'PatientName' : 'Jodogne', | |
| 2612 '8899-8899' : encoded | |
| 2613 } | |
| 2614 | |
| 2615 i = DoPost(_REMOTE, '/tools/create-dicom', | |
| 2616 json.dumps({ | |
| 266 | 2617 'Tags' : tags, |
| 2618 'PrivateCreator' : 'TestBinary', | |
| 47 | 2619 })) |
| 2620 | |
| 2621 self.assertEqual('Jodogne', DoGet(_REMOTE, '/instances/%s/content/PatientName' % i['ID']).strip()) | |
| 2622 self.assertEqual(binary, DoGet(_REMOTE, '/instances/%s/content/8899-8899' % i['ID']).strip()) | |
| 2623 | |
| 2624 i = DoPost(_REMOTE, '/tools/create-dicom', | |
| 2625 json.dumps({ | |
| 2626 'InterpretBinaryTags' : False, | |
| 266 | 2627 'Tags' : tags, |
| 2628 'PrivateCreator' : 'TestBinary', | |
| 47 | 2629 })) |
| 2630 | |
| 2631 self.assertEqual('Jodogne', DoGet(_REMOTE, '/instances/%s/content/PatientName' % i['ID']).strip()) | |
| 2632 self.assertEqual(encoded, DoGet(_REMOTE, '/instances/%s/content/8899-8899' % i['ID'])[0:-1]) | |
|
48
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parents:
47
diff
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|
2633 |
|
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diff
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|
2634 |
|
e4352463ff74
test_patient_ids_collision
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parents:
47
diff
changeset
|
2635 def test_patient_ids_collision(self): |
|
e4352463ff74
test_patient_ids_collision
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parents:
47
diff
changeset
|
2636 # Upload 3 instances from 3 different studies, but with the |
|
e4352463ff74
test_patient_ids_collision
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parents:
47
diff
changeset
|
2637 # same PatientID |
|
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parents:
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diff
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|
2638 for i in range(3): |
|
e4352463ff74
test_patient_ids_collision
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
changeset
|
2639 UploadInstance(_REMOTE, 'PatientIdsCollision/Image%d.dcm' % (i + 1)) |
|
e4352463ff74
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diff
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|
2640 |
|
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diff
changeset
|
2641 a = DoPost(_REMOTE, '/tools/find', { 'Level' : 'Patient', |
|
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diff
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|
2642 'Query' : { 'PatientName' : '*' }}) |
|
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diff
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|
2643 self.assertEqual(1, len(a)) |
|
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diff
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|
2644 self.assertEqual('COMMON', DoGet(_REMOTE, '/patients/%s' % a[0]) ['MainDicomTags']['PatientID']) |
|
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|
2645 |
|
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diff
changeset
|
2646 a = DoPost(_REMOTE, '/tools/find', { 'Level' : 'Study', |
|
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diff
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2647 'CaseSensitive' : True, |
|
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diff
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|
2648 'Query' : { 'PatientName' : 'FOO\\HELLO' }}) |
|
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diff
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|
2649 self.assertEqual(2, len(a)) |
|
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|
2650 |
|
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|
2651 a = DoPost(_REMOTE, '/tools/find', { 'Level' : 'Series', |
|
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2652 'CaseSensitive' : False, |
|
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2653 'Query' : { 'PatientName' : 'Foo' }}) |
|
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2654 self.assertEqual(1, len(a)) |
|
e4352463ff74
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2655 self.assertEqual('FOO^SERIES', DoGet(_REMOTE, '/series/%s/study' % a[0]) ['MainDicomTags']['StudyDescription']) |
|
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|
2656 self.assertEqual('FOO', DoGet(_REMOTE, '/series/%s/study' % a[0]) ['PatientMainDicomTags']['PatientName']) |
|
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|
2657 self.assertEqual('COMMON', DoGet(_REMOTE, '/series/%s/study' % a[0]) ['PatientMainDicomTags']['PatientID']) |
|
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|
2658 |
|
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changeset
|
2659 a = DoPost(_REMOTE, '/tools/find', { 'Level' : 'Study', |
|
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diff
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|
2660 'Query' : { 'PatientName' : '*' }}) |
|
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changeset
|
2661 self.assertEqual(3, len(a)) |
|
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|
2662 d = map(lambda x: DoGet(_REMOTE, '/studies/%s' % x) ['MainDicomTags']['StudyDescription'], a) |
|
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changeset
|
2663 self.assertTrue('FOO^SERIES' in d) |
|
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|
2664 self.assertTrue('HELLO^SERIES' in d) |
|
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changeset
|
2665 self.assertTrue('WORLD^SERIES' in d) |
|
e4352463ff74
test_patient_ids_collision
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
47
diff
changeset
|
2666 |
|
e4352463ff74
test_patient_ids_collision
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
47
diff
changeset
|
2667 d = map(lambda x: DoGet(_REMOTE, '/studies/%s' % x) ['PatientMainDicomTags']['PatientID'], a) |
|
e4352463ff74
test_patient_ids_collision
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
47
diff
changeset
|
2668 self.assertEqual(1, len(set(d))) |
|
e4352463ff74
test_patient_ids_collision
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
47
diff
changeset
|
2669 self.assertEqual('COMMON', d[0]) |
|
e4352463ff74
test_patient_ids_collision
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
47
diff
changeset
|
2670 |
|
e4352463ff74
test_patient_ids_collision
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
47
diff
changeset
|
2671 for i in a: |
|
e4352463ff74
test_patient_ids_collision
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
47
diff
changeset
|
2672 d = DoGet(_REMOTE, '/studies/%s' % i) ['MainDicomTags']['StudyDescription'] |
|
e4352463ff74
test_patient_ids_collision
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
47
diff
changeset
|
2673 p = DoGet(_REMOTE, '/studies/%s' % i) ['PatientMainDicomTags']['PatientName'] |
|
e4352463ff74
test_patient_ids_collision
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
47
diff
changeset
|
2674 self.assertEqual('%s^SERIES' % p, d) |
|
49
e7f9b8199545
test_bitbucket_issue_4
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
48
diff
changeset
|
2675 |
|
e7f9b8199545
test_bitbucket_issue_4
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
48
diff
changeset
|
2676 |
|
e7f9b8199545
test_bitbucket_issue_4
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
48
diff
changeset
|
2677 def test_bitbucket_issue_4(self): |
|
e7f9b8199545
test_bitbucket_issue_4
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
48
diff
changeset
|
2678 UploadInstance(_REMOTE, 'Brainix/Epi/IM-0001-0001.dcm') |
|
e7f9b8199545
test_bitbucket_issue_4
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
48
diff
changeset
|
2679 UploadInstance(_REMOTE, 'Brainix/Epi/IM-0001-0002.dcm') |
|
e7f9b8199545
test_bitbucket_issue_4
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
48
diff
changeset
|
2680 UploadInstance(_REMOTE, 'Brainix/Epi/IM-0001-0003.dcm') |
|
e7f9b8199545
test_bitbucket_issue_4
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
48
diff
changeset
|
2681 UploadInstance(_REMOTE, 'Formats/Jpeg.dcm') |
|
e7f9b8199545
test_bitbucket_issue_4
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
48
diff
changeset
|
2682 UploadInstance(_REMOTE, 'Formats/JpegLossless.dcm') |
|
e7f9b8199545
test_bitbucket_issue_4
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
48
diff
changeset
|
2683 UploadInstance(_REMOTE, 'Formats/Rle.dcm') |
|
e7f9b8199545
test_bitbucket_issue_4
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
48
diff
changeset
|
2684 |
|
e7f9b8199545
test_bitbucket_issue_4
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
48
diff
changeset
|
2685 self.assertEqual(0, len(DoGet(_LOCAL, '/instances'))) |
|
e7f9b8199545
test_bitbucket_issue_4
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
48
diff
changeset
|
2686 self.assertEqual(6, len(DoGet(_REMOTE, '/instances'))) |
|
e7f9b8199545
test_bitbucket_issue_4
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
48
diff
changeset
|
2687 |
|
e7f9b8199545
test_bitbucket_issue_4
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
48
diff
changeset
|
2688 p = DoGet(_REMOTE, '/patients') |
|
e7f9b8199545
test_bitbucket_issue_4
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
48
diff
changeset
|
2689 self.assertEqual(2, len(p)) |
|
e7f9b8199545
test_bitbucket_issue_4
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
48
diff
changeset
|
2690 i1 = map(lambda x: x['ID'], DoGet(_REMOTE, '/patients/%s/instances' % p[0])) |
|
e7f9b8199545
test_bitbucket_issue_4
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
48
diff
changeset
|
2691 i2 = map(lambda x: x['ID'], DoGet(_REMOTE, '/patients/%s/instances' % p[1])) |
|
e7f9b8199545
test_bitbucket_issue_4
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
48
diff
changeset
|
2692 self.assertEqual(3, len(i1)) |
|
e7f9b8199545
test_bitbucket_issue_4
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
48
diff
changeset
|
2693 self.assertEqual(3, len(i2)) |
|
e7f9b8199545
test_bitbucket_issue_4
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
48
diff
changeset
|
2694 |
|
e7f9b8199545
test_bitbucket_issue_4
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
48
diff
changeset
|
2695 j = DoPost(_REMOTE, '/modalities/orthanctest/store', i2[0:1] + i1 + i2[1:3]) |
|
e7f9b8199545
test_bitbucket_issue_4
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
48
diff
changeset
|
2696 |
|
e7f9b8199545
test_bitbucket_issue_4
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
48
diff
changeset
|
2697 self.assertEqual(6, len(DoGet(_LOCAL, '/instances'))) |
|
50
8de63d56cf11
test_create_sequence
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
49
diff
changeset
|
2698 |
|
8de63d56cf11
test_create_sequence
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
49
diff
changeset
|
2699 |
|
8de63d56cf11
test_create_sequence
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
49
diff
changeset
|
2700 def test_create_sequence(self): |
|
8de63d56cf11
test_create_sequence
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
49
diff
changeset
|
2701 i = DoPost(_REMOTE, '/tools/create-dicom', |
|
8de63d56cf11
test_create_sequence
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
49
diff
changeset
|
2702 json.dumps({ |
|
8de63d56cf11
test_create_sequence
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
49
diff
changeset
|
2703 'Tags' : { |
|
8de63d56cf11
test_create_sequence
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
49
diff
changeset
|
2704 'SpecificCharacterSet': 'ISO_IR 100', # Encode using Latin1 |
|
8de63d56cf11
test_create_sequence
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
49
diff
changeset
|
2705 'PatientName': 'Jodogne^', |
|
51
264a20a0276d
test_modify_sequence
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
50
diff
changeset
|
2706 'ReferencedStudySequence': GenerateTestSequence(), |
|
50
8de63d56cf11
test_create_sequence
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
49
diff
changeset
|
2707 } |
|
8de63d56cf11
test_create_sequence
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
49
diff
changeset
|
2708 }))['ID'] |
|
8de63d56cf11
test_create_sequence
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
49
diff
changeset
|
2709 |
|
8de63d56cf11
test_create_sequence
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
49
diff
changeset
|
2710 self.assertEqual('Jodogne^', DoGet(_REMOTE, '/instances/%s/content/PatientName' % i)) |
|
8de63d56cf11
test_create_sequence
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
49
diff
changeset
|
2711 self.assertEqual('Hello^', DoGet(_REMOTE, '/instances/%s/content/ReferencedStudySequence/0/StudyDescription' % i)) |
|
8de63d56cf11
test_create_sequence
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
49
diff
changeset
|
2712 self.assertEqual('Toto', DoGet(_REMOTE, '/instances/%s/content/ReferencedStudySequence/0/ReferencedStudySequence/0/StudyDescription' % i)) |
|
8de63d56cf11
test_create_sequence
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
49
diff
changeset
|
2713 self.assertEqual('Tata', DoGet(_REMOTE, '/instances/%s/content/ReferencedStudySequence/0/ReferencedStudySequence/1/StudyDescription' % i)) |
|
8de63d56cf11
test_create_sequence
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
49
diff
changeset
|
2714 self.assertEqual(u'Sébastien^'.encode('latin-1'), |
|
8de63d56cf11
test_create_sequence
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
49
diff
changeset
|
2715 DoGet(_REMOTE, '/instances/%s/content/ReferencedStudySequence/1/StudyDescription' % i)) |
|
51
264a20a0276d
test_modify_sequence
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
50
diff
changeset
|
2716 |
|
264a20a0276d
test_modify_sequence
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
50
diff
changeset
|
2717 |
|
264a20a0276d
test_modify_sequence
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
50
diff
changeset
|
2718 def test_modify_sequence(self): |
|
264a20a0276d
test_modify_sequence
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
50
diff
changeset
|
2719 i = UploadInstance(_REMOTE, 'PrivateTags.dcm')['ID'] |
|
264a20a0276d
test_modify_sequence
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
50
diff
changeset
|
2720 self.assertRaises(Exception, lambda: DoGet(_REMOTE, '/instances/%s/content/ReferencedStudySequence' % i)) |
|
264a20a0276d
test_modify_sequence
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
50
diff
changeset
|
2721 |
|
264a20a0276d
test_modify_sequence
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
50
diff
changeset
|
2722 j = DoPost(_REMOTE, '/instances/%s/modify' % i, |
|
264a20a0276d
test_modify_sequence
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
50
diff
changeset
|
2723 json.dumps({ |
|
264a20a0276d
test_modify_sequence
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
50
diff
changeset
|
2724 "Replace" : { |
|
264a20a0276d
test_modify_sequence
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
50
diff
changeset
|
2725 "PatientName" : "hello", |
|
264a20a0276d
test_modify_sequence
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
50
diff
changeset
|
2726 'ReferencedStudySequence': GenerateTestSequence(), |
|
264a20a0276d
test_modify_sequence
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
50
diff
changeset
|
2727 }, |
|
264a20a0276d
test_modify_sequence
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
50
diff
changeset
|
2728 }), |
|
264a20a0276d
test_modify_sequence
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
50
diff
changeset
|
2729 'application/json') |
|
264a20a0276d
test_modify_sequence
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
50
diff
changeset
|
2730 j = DoPost(_REMOTE, '/instances', j, 'application/dicom')['ID'] |
|
264a20a0276d
test_modify_sequence
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
50
diff
changeset
|
2731 DoDelete(_REMOTE, '/instances/%s' % i) |
|
264a20a0276d
test_modify_sequence
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
50
diff
changeset
|
2732 |
| 52 | 2733 self.assertEqual(2, len(DoGet(_REMOTE, '/instances/%s/content/ReferencedStudySequence' % j))) |
| 2734 | |
| 2735 | |
| 2736 def test_compression(self): | |
| 2737 i = UploadInstance(_REMOTE, 'DummyCT.dcm')['ID'] | |
| 2738 | |
| 2739 data = DoGetRaw(_REMOTE, '/instances/%s/attachments/dicom-as-json/data' % i)[1] | |
| 2740 | |
| 2741 # "StorageCompression" is enabled in the Orthanc to be tested, | |
| 2742 # uncompress the data before running the test | |
| 2743 if DoGet(_REMOTE, '/instances/%s/attachments/dicom-as-json/is-compressed' % i) != 0: | |
| 2744 DoPost(_REMOTE, '/instances/%s/attachments/dicom-as-json/uncompress' % i) | |
| 2745 | |
| 2746 cs = DoGet(_REMOTE, '/statistics')['TotalDiskSize'] | |
| 2747 us = DoGet(_REMOTE, '/statistics')['TotalUncompressedSize'] | |
| 2748 size = DoGet(_REMOTE, '/instances/%s/attachments/dicom-as-json/size' % i) | |
| 2749 md5 = DoGet(_REMOTE, '/instances/%s/attachments/dicom-as-json/md5' % i) | |
| 2750 self.assertEqual(data, DoGetRaw(_REMOTE, '/instances/%s/attachments/dicom-as-json/compressed-data' % i)[1]) | |
| 2751 self.assertEqual(md5, DoGet(_REMOTE, '/instances/%s/attachments/dicom-as-json/compressed-md5' % i)) | |
| 2752 self.assertEqual(size, DoGet(_REMOTE, '/instances/%s/attachments/dicom-as-json/compressed-size' % i)) | |
| 2753 | |
| 2754 ops = DoGet(_REMOTE, '/instances/%s/attachments/dicom-as-json' % i) | |
| 2755 self.assertTrue('compress' in ops) | |
| 2756 self.assertTrue('uncompress' in ops) | |
| 2757 self.assertTrue('is-compressed' in ops) | |
| 2758 self.assertEqual(0, DoGet(_REMOTE, '/instances/%s/attachments/dicom-as-json/is-compressed' % i)) | |
| 2759 DoPost(_REMOTE, '/instances/%s/attachments/dicom-as-json/verify-md5' % i) | |
| 2760 | |
| 2761 DoPost(_REMOTE, '/instances/%s/attachments/dicom-as-json/compress' % i) | |
| 2762 DoPost(_REMOTE, '/instances/%s/attachments/dicom-as-json/verify-md5' % i) | |
| 2763 self.assertEqual(1, DoGet(_REMOTE, '/instances/%s/attachments/dicom-as-json/is-compressed' % i)) | |
| 2764 self.assertLess(cs, DoGet(_REMOTE, '/statistics')['TotalDiskSize']) | |
| 2765 self.assertEqual(us, DoGet(_REMOTE, '/statistics')['TotalUncompressedSize']) | |
| 2766 self.assertGreater(len(data), len(DoGetRaw(_REMOTE, '/instances/%s/attachments/dicom-as-json/compressed-data' % i)[1])) | |
| 2767 self.assertGreater(size, DoGet(_REMOTE, '/instances/%s/attachments/dicom-as-json/compressed-size' % i)) | |
| 2768 self.assertEqual(size, DoGet(_REMOTE, '/instances/%s/attachments/dicom-as-json/size' % i)) | |
| 2769 self.assertEqual(md5, DoGet(_REMOTE, '/instances/%s/attachments/dicom-as-json/md5' % i)) | |
| 2770 self.assertNotEqual(md5, DoGet(_REMOTE, '/instances/%s/attachments/dicom-as-json/compressed-md5' % i)) | |
| 2771 | |
| 2772 DoPost(_REMOTE, '/instances/%s/attachments/dicom-as-json/uncompress' % i) | |
| 2773 DoPost(_REMOTE, '/instances/%s/attachments/dicom-as-json/verify-md5' % i) | |
| 2774 self.assertEqual(0, DoGet(_REMOTE, '/instances/%s/attachments/dicom-as-json/is-compressed' % i)) | |
| 2775 self.assertEqual(data, DoGetRaw(_REMOTE, '/instances/%s/attachments/dicom-as-json/compressed-data' % i)[1]) | |
| 2776 self.assertEqual(size, DoGet(_REMOTE, '/instances/%s/attachments/dicom-as-json/compressed-size' % i)) | |
| 2777 self.assertEqual(size, DoGet(_REMOTE, '/instances/%s/attachments/dicom-as-json/size' % i)) | |
| 2778 self.assertEqual(md5, DoGet(_REMOTE, '/instances/%s/attachments/dicom-as-json/md5' % i)) | |
| 2779 self.assertEqual(md5, DoGet(_REMOTE, '/instances/%s/attachments/dicom-as-json/compressed-md5' % i)) | |
| 2780 self.assertEqual(cs, DoGet(_REMOTE, '/statistics')['TotalDiskSize']) | |
| 2781 self.assertEqual(us, DoGet(_REMOTE, '/statistics')['TotalUncompressedSize']) | |
| 53 | 2782 |
| 2783 | |
| 2784 def test_ordered_slices(self): | |
| 2785 i = UploadInstance(_REMOTE, 'Multiframe.dcm')['ID'] | |
| 2786 s = DoGet(_REMOTE, '/instances/%s' % i)['ParentSeries'] | |
| 2787 o = DoGet(_REMOTE, '/series/%s/ordered-slices' % s) | |
| 2788 self.assertEqual('Sequence', o['Type']) | |
| 2789 self.assertEqual(1, len(o['Dicom'])) | |
| 2790 self.assertEqual('/instances/9e05eb0a-18b6268c-e0d36085-8ddab517-3b5aec02/file', o['Dicom'][0]) | |
| 2791 self.assertEqual(76, len(o['Slices'])) | |
| 2792 for j in range(76): | |
| 2793 self.assertEqual('/instances/9e05eb0a-18b6268c-e0d36085-8ddab517-3b5aec02/frames/%d' % j, o['Slices'][j]) | |
| 2794 | |
| 68 | 2795 self.assertEqual(1, len(o['SlicesShort'])) |
| 2796 self.assertEqual('9e05eb0a-18b6268c-e0d36085-8ddab517-3b5aec02', o['SlicesShort'][0][0]) | |
| 2797 self.assertEqual(0, o['SlicesShort'][0][1]) | |
| 2798 self.assertEqual(76, o['SlicesShort'][0][2]) | |
| 2799 | |
| 53 | 2800 i = UploadInstance(_REMOTE, 'Brainix/Epi/IM-0001-0001.dcm')['ID'] |
| 2801 j = UploadInstance(_REMOTE, 'Brainix/Epi/IM-0001-0002.dcm')['ID'] | |
| 2802 k = UploadInstance(_REMOTE, 'Brainix/Epi/IM-0001-0003.dcm')['ID'] | |
| 2803 s = DoGet(_REMOTE, '/instances/%s' % i)['ParentSeries'] | |
| 2804 o = DoGet(_REMOTE, '/series/%s/ordered-slices' % s) | |
| 2805 | |
| 2806 self.assertEqual('Volume', o['Type']) | |
| 2807 self.assertEqual(3, len(o['Dicom'])) | |
| 2808 self.assertEqual(3, len(o['Slices'])) | |
| 2809 self.assertEqual('/instances/%s/file' % i, o['Dicom'][2]) | |
| 2810 self.assertEqual('/instances/%s/file' % j, o['Dicom'][1]) | |
| 2811 self.assertEqual('/instances/%s/file' % k, o['Dicom'][0]) | |
| 2812 self.assertEqual('/instances/%s/frames/0' % i, o['Slices'][2]) | |
| 2813 self.assertEqual('/instances/%s/frames/0' % j, o['Slices'][1]) | |
| 2814 self.assertEqual('/instances/%s/frames/0' % k, o['Slices'][0]) | |
| 2815 | |
| 68 | 2816 self.assertEqual(3, len(o['SlicesShort'])) |
| 2817 self.assertEqual(k, o['SlicesShort'][0][0]) | |
| 2818 self.assertEqual(0, o['SlicesShort'][0][1]) | |
| 2819 self.assertEqual(1, o['SlicesShort'][0][2]) | |
| 2820 self.assertEqual(j, o['SlicesShort'][1][0]) | |
| 2821 self.assertEqual(0, o['SlicesShort'][1][1]) | |
| 2822 self.assertEqual(1, o['SlicesShort'][1][2]) | |
| 2823 self.assertEqual(i, o['SlicesShort'][2][0]) | |
| 2824 self.assertEqual(0, o['SlicesShort'][2][1]) | |
| 2825 self.assertEqual(1, o['SlicesShort'][2][2]) | |
| 2826 | |
| 53 | 2827 i = UploadInstance(_REMOTE, 'Beaufix/IM-0001-0001.dcm')['ID'] |
| 2828 j = UploadInstance(_REMOTE, 'Beaufix/IM-0001-0002.dcm')['ID'] | |
| 2829 s = DoGet(_REMOTE, '/instances/%s' % i)['ParentSeries'] | |
| 2830 o = DoGet(_REMOTE, '/series/%s/ordered-slices' % s) | |
| 2831 | |
| 2832 self.assertEqual('Sequence', o['Type']) | |
| 2833 self.assertEqual(2, len(o['Dicom'])) | |
| 2834 self.assertEqual(2, len(o['Slices'])) | |
| 2835 self.assertEqual('/instances/%s/file' % i, o['Dicom'][0]) | |
| 2836 self.assertEqual('/instances/%s/file' % j, o['Dicom'][1]) | |
| 2837 self.assertEqual('/instances/%s/frames/0' % i, o['Slices'][0]) | |
| 2838 self.assertEqual('/instances/%s/frames/0' % j, o['Slices'][1]) | |
|
54
c5f8a6b0d85e
test_incoming_movescu_accession
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
53
diff
changeset
|
2839 |
| 68 | 2840 self.assertEqual(2, len(o['SlicesShort'])) |
| 2841 self.assertEqual(i, o['SlicesShort'][0][0]) | |
| 2842 self.assertEqual(0, o['SlicesShort'][0][1]) | |
| 2843 self.assertEqual(1, o['SlicesShort'][0][2]) | |
| 2844 self.assertEqual(j, o['SlicesShort'][1][0]) | |
| 2845 self.assertEqual(0, o['SlicesShort'][1][1]) | |
| 2846 self.assertEqual(1, o['SlicesShort'][1][2]) | |
| 2847 | |
| 2848 | |
|
54
c5f8a6b0d85e
test_incoming_movescu_accession
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
53
diff
changeset
|
2849 |
|
c5f8a6b0d85e
test_incoming_movescu_accession
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
53
diff
changeset
|
2850 def test_incoming_movescu_accession(self): |
|
c5f8a6b0d85e
test_incoming_movescu_accession
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
53
diff
changeset
|
2851 UploadInstance(_REMOTE, 'Knee/T1/IM-0001-0001.dcm') |
|
c5f8a6b0d85e
test_incoming_movescu_accession
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
53
diff
changeset
|
2852 |
|
137
412d5f70447e
testing asynchronous c-move
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
136
diff
changeset
|
2853 # No matching patient, so no job is created |
|
54
c5f8a6b0d85e
test_incoming_movescu_accession
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
53
diff
changeset
|
2854 self.assertEqual(0, len(DoGet(_LOCAL, '/patients'))) |
|
c5f8a6b0d85e
test_incoming_movescu_accession
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
53
diff
changeset
|
2855 CallMoveScu([ '--study', '-k', '0008,0052=STUDY', '-k', 'AccessionNumber=nope' ]) |
|
c5f8a6b0d85e
test_incoming_movescu_accession
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
53
diff
changeset
|
2856 self.assertEqual(0, len(DoGet(_LOCAL, '/patients'))) |
|
c5f8a6b0d85e
test_incoming_movescu_accession
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
53
diff
changeset
|
2857 CallMoveScu([ '--study', '-k', '0008,0052=PATIENT', '-k', 'AccessionNumber=A10003245599' ]) |
|
c5f8a6b0d85e
test_incoming_movescu_accession
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
53
diff
changeset
|
2858 self.assertEqual(0, len(DoGet(_LOCAL, '/patients'))) |
|
137
412d5f70447e
testing asynchronous c-move
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
136
diff
changeset
|
2859 |
|
412d5f70447e
testing asynchronous c-move
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
136
diff
changeset
|
2860 # 1 Matching patient, track the job |
| 138 | 2861 self.assertTrue(MonitorJob(_REMOTE, lambda: CallMoveScu([ |
| 2862 '--study', | |
| 2863 '-k', '0008,0052=STUDY', | |
| 2864 '-k', 'AccessionNumber=A10003245599' | |
| 2865 ]))) | |
|
137
412d5f70447e
testing asynchronous c-move
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
136
diff
changeset
|
2866 |
|
54
c5f8a6b0d85e
test_incoming_movescu_accession
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
53
diff
changeset
|
2867 self.assertEqual(1, len(DoGet(_LOCAL, '/patients'))) |
|
c5f8a6b0d85e
test_incoming_movescu_accession
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
53
diff
changeset
|
2868 |
| 55 | 2869 |
| 2870 def test_dicom_to_json(self): | |
| 2871 i = UploadInstance(_REMOTE, 'PrivateMDNTags.dcm')['ID'] | |
|
60
cd3c7f70f139
test backward compatibility with Orthanc 0.9.4
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
59
diff
changeset
|
2872 j = UploadInstance(_REMOTE, 'PrivateTags.dcm')['ID'] |
|
cd3c7f70f139
test backward compatibility with Orthanc 0.9.4
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
59
diff
changeset
|
2873 |
|
cd3c7f70f139
test backward compatibility with Orthanc 0.9.4
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
59
diff
changeset
|
2874 t = DoGet(_REMOTE, '/instances/%s/tags?simplify' % i) |
|
cd3c7f70f139
test backward compatibility with Orthanc 0.9.4
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
59
diff
changeset
|
2875 with open(GetDatabasePath('PrivateMDNTagsSimplify.json'), 'r') as f: |
|
80
8466dbfcb22b
fix test against dcmtk 3.6.1
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
79
diff
changeset
|
2876 self.assertTrue(CompareTags(t, json.loads(f.read()), [ |
| 123 | 2877 # Tags for compatibility with DCMTK 3.6.0 |
| 2878 'RETIRED_OtherPatientIDs', | |
| 2879 'OtherPatientIDs', | |
| 2880 'ACR_NEMA_2C_VariablePixelDataGroupLength', | |
|
80
8466dbfcb22b
fix test against dcmtk 3.6.1
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
79
diff
changeset
|
2881 ])) |
| 55 | 2882 |
| 2883 t = DoGet(_REMOTE, '/instances/%s/tags' % i) | |
| 2884 with open(GetDatabasePath('PrivateMDNTagsFull.json'), 'r') as f: | |
|
87
4b24faec842b
test_reconstruct_json2 + test_private_tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
86
diff
changeset
|
2885 self.assertTrue(CompareTags(t, json.loads(f.read()), [ |
|
4b24faec842b
test_reconstruct_json2 + test_private_tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
86
diff
changeset
|
2886 ])) |
| 55 | 2887 |
|
60
cd3c7f70f139
test backward compatibility with Orthanc 0.9.4
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
59
diff
changeset
|
2888 t = DoGet(_REMOTE, '/instances/%s/tags?simplify' % j) |
|
cd3c7f70f139
test backward compatibility with Orthanc 0.9.4
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
59
diff
changeset
|
2889 with open(GetDatabasePath('PrivateTagsSimplify.json'), 'r') as f: |
|
80
8466dbfcb22b
fix test against dcmtk 3.6.1
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
79
diff
changeset
|
2890 self.assertTrue(CompareTags(t, json.loads(f.read()), [ |
|
8466dbfcb22b
fix test against dcmtk 3.6.1
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
79
diff
changeset
|
2891 ])) |
|
60
cd3c7f70f139
test backward compatibility with Orthanc 0.9.4
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
59
diff
changeset
|
2892 |
|
cd3c7f70f139
test backward compatibility with Orthanc 0.9.4
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
59
diff
changeset
|
2893 t = DoGet(_REMOTE, '/instances/%s/tags' % j) |
|
cd3c7f70f139
test backward compatibility with Orthanc 0.9.4
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
59
diff
changeset
|
2894 with open(GetDatabasePath('PrivateTagsFull.json'), 'r') as f: |
|
cd3c7f70f139
test backward compatibility with Orthanc 0.9.4
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
59
diff
changeset
|
2895 a = json.loads(f.read()) |
|
65
09fc27e0899a
patch for testing windows builds
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
64
diff
changeset
|
2896 aa = json.dumps(a).replace('2e+022', '2e+22') |
|
09fc27e0899a
patch for testing windows builds
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
64
diff
changeset
|
2897 tt = json.dumps(t).replace('2e+022', '2e+22') |
|
09fc27e0899a
patch for testing windows builds
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
64
diff
changeset
|
2898 self.assertEqual(aa, tt) |
| 57 | 2899 |
| 2900 | |
| 2901 def test_batch_archive(self): | |
| 2902 UploadInstance(_REMOTE, 'Knee/T1/IM-0001-0001.dcm') | |
| 2903 UploadInstance(_REMOTE, 'Knee/T1/IM-0001-0002.dcm') | |
| 2904 UploadInstance(_REMOTE, 'Knee/T2/IM-0001-0001.dcm') | |
| 2905 UploadInstance(_REMOTE, 'Knee/T2/IM-0001-0002.dcm') | |
| 2906 UploadInstance(_REMOTE, 'Brainix/Epi/IM-0001-0001.dcm') | |
| 2907 UploadInstance(_REMOTE, 'Brainix/Epi/IM-0001-0002.dcm') | |
| 2908 UploadInstance(_REMOTE, 'Brainix/Flair/IM-0001-0001.dcm') | |
| 2909 UploadInstance(_REMOTE, 'Brainix/Flair/IM-0001-0002.dcm') | |
| 2910 | |
| 2911 s = DoPost(_REMOTE, '/tools/create-archive', [ ]) | |
| 2912 z = zipfile.ZipFile(StringIO(s), "r") | |
| 2913 self.assertEqual(0, len(z.namelist())) | |
| 2914 | |
| 2915 # One patient | |
| 2916 s = DoPost(_REMOTE, '/tools/create-archive', [ 'ca29faea-b6a0e17f-067743a1-8b778011-a48b2a17' ]) | |
| 2917 z = zipfile.ZipFile(StringIO(s), "r") | |
| 2918 self.assertEqual(4, len(z.namelist())) | |
| 2919 | |
| 2920 # One patient + twice its study + one series from other patient | |
| 2921 s = DoPost(_REMOTE, '/tools/create-archive', [ | |
| 2922 'ca29faea-b6a0e17f-067743a1-8b778011-a48b2a17', | |
| 2923 '0a9b3153-2512774b-2d9580de-1fc3dcf6-3bd83918', | |
| 2924 '1e2c125c-411b8e86-3f4fe68e-a7584dd3-c6da78f0' | |
| 2925 ]) | |
| 2926 z = zipfile.ZipFile(StringIO(s), "r") | |
| 2927 self.assertEqual(6, len(z.namelist())) | |
| 2928 | |
| 2929 # One patient + one series + one instance | |
| 2930 s = DoPost(_REMOTE, '/tools/create-archive', [ | |
| 2931 'ca29faea-b6a0e17f-067743a1-8b778011-a48b2a17', | |
| 2932 '1e2c125c-411b8e86-3f4fe68e-a7584dd3-c6da78f0', | |
| 2933 '1d429ccb-bdcc78a1-7d129d6a-ba4966ed-fe4dbd87' | |
| 2934 ]) | |
| 2935 z = zipfile.ZipFile(StringIO(s), "r") | |
| 2936 self.assertEqual(7, len(z.namelist())) | |
|
59
84378ada15ab
test_decode_brainix_as_jpeg
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
58
diff
changeset
|
2937 |
|
84378ada15ab
test_decode_brainix_as_jpeg
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
58
diff
changeset
|
2938 |
|
84378ada15ab
test_decode_brainix_as_jpeg
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
58
diff
changeset
|
2939 def test_decode_brainix_as_jpeg(self): |
|
84378ada15ab
test_decode_brainix_as_jpeg
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
58
diff
changeset
|
2940 i = UploadInstance(_REMOTE, 'Brainix/Epi/IM-0001-0001.dcm')['ID'] |
|
84378ada15ab
test_decode_brainix_as_jpeg
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
58
diff
changeset
|
2941 |
|
84378ada15ab
test_decode_brainix_as_jpeg
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
58
diff
changeset
|
2942 j = GetImage(_REMOTE, '/instances/%s/preview' % i) |
|
84378ada15ab
test_decode_brainix_as_jpeg
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
58
diff
changeset
|
2943 self.assertEqual('PNG', j.format) |
|
84378ada15ab
test_decode_brainix_as_jpeg
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
58
diff
changeset
|
2944 self.assertEqual(j.size[0], 256) |
|
84378ada15ab
test_decode_brainix_as_jpeg
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
58
diff
changeset
|
2945 self.assertEqual(j.size[1], 256) |
|
84378ada15ab
test_decode_brainix_as_jpeg
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
58
diff
changeset
|
2946 |
|
84378ada15ab
test_decode_brainix_as_jpeg
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
58
diff
changeset
|
2947 j = GetImage(_REMOTE, '/instances/%s/preview' % i, headers = { 'Accept' : '*/*' }) |
|
84378ada15ab
test_decode_brainix_as_jpeg
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
58
diff
changeset
|
2948 self.assertEqual('PNG', j.format) |
|
84378ada15ab
test_decode_brainix_as_jpeg
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
58
diff
changeset
|
2949 |
|
84378ada15ab
test_decode_brainix_as_jpeg
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
58
diff
changeset
|
2950 j = GetImage(_REMOTE, '/instances/%s/preview' % i, headers = { 'Accept' : 'image/*' }) |
|
84378ada15ab
test_decode_brainix_as_jpeg
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
58
diff
changeset
|
2951 self.assertEqual('PNG', j.format) |
|
84378ada15ab
test_decode_brainix_as_jpeg
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
58
diff
changeset
|
2952 |
|
84378ada15ab
test_decode_brainix_as_jpeg
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
58
diff
changeset
|
2953 j = GetImage(_REMOTE, '/instances/%s/preview' % i, headers = { 'Accept' : 'image/png' }) |
|
84378ada15ab
test_decode_brainix_as_jpeg
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
58
diff
changeset
|
2954 self.assertEqual('PNG', j.format) |
|
84378ada15ab
test_decode_brainix_as_jpeg
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
58
diff
changeset
|
2955 |
|
84378ada15ab
test_decode_brainix_as_jpeg
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
58
diff
changeset
|
2956 j = GetImage(_REMOTE, '/instances/%s/preview' % i, headers = { 'Accept' : 'image/jpeg' }) |
|
84378ada15ab
test_decode_brainix_as_jpeg
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
58
diff
changeset
|
2957 self.assertEqual('JPEG', j.format) |
|
84378ada15ab
test_decode_brainix_as_jpeg
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
58
diff
changeset
|
2958 self.assertEqual(j.size[0], 256) |
|
84378ada15ab
test_decode_brainix_as_jpeg
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
58
diff
changeset
|
2959 self.assertEqual(j.size[1], 256) |
|
84378ada15ab
test_decode_brainix_as_jpeg
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
58
diff
changeset
|
2960 |
|
84378ada15ab
test_decode_brainix_as_jpeg
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
58
diff
changeset
|
2961 a = len(DoGet(_REMOTE, '/instances/%s/preview?quality=50' % i, headers = { 'Accept' : 'image/jpeg' })) |
|
84378ada15ab
test_decode_brainix_as_jpeg
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
58
diff
changeset
|
2962 b = len(DoGet(_REMOTE, '/instances/%s/preview' % i, headers = { 'Accept' : 'image/jpeg' })) |
|
84378ada15ab
test_decode_brainix_as_jpeg
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
58
diff
changeset
|
2963 self.assertLess(a, b) |
|
84378ada15ab
test_decode_brainix_as_jpeg
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
58
diff
changeset
|
2964 |
|
84378ada15ab
test_decode_brainix_as_jpeg
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
58
diff
changeset
|
2965 j = GetImage(_REMOTE, '/instances/%s/image-uint8' % i, headers = { 'Accept' : 'image/jpeg' }) |
|
84378ada15ab
test_decode_brainix_as_jpeg
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
58
diff
changeset
|
2966 self.assertEqual('JPEG', j.format) |
|
84378ada15ab
test_decode_brainix_as_jpeg
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
58
diff
changeset
|
2967 |
|
84378ada15ab
test_decode_brainix_as_jpeg
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
58
diff
changeset
|
2968 # 16bit encoding is not supported with JPEG |
|
84378ada15ab
test_decode_brainix_as_jpeg
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
58
diff
changeset
|
2969 self.assertRaises(Exception, lambda: GetImage(_REMOTE, '/instances/%s/image-uint16' % i, headers = { 'Accept' : 'image/jpeg' })) |
|
84378ada15ab
test_decode_brainix_as_jpeg
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
58
diff
changeset
|
2970 self.assertRaises(Exception, lambda: GetImage(_REMOTE, '/instances/%s/image-int16' % i, headers = { 'Accept' : 'image/jpeg' })) |
|
84378ada15ab
test_decode_brainix_as_jpeg
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
58
diff
changeset
|
2971 |
|
84378ada15ab
test_decode_brainix_as_jpeg
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
58
diff
changeset
|
2972 # No matching content type |
|
84378ada15ab
test_decode_brainix_as_jpeg
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
58
diff
changeset
|
2973 self.assertRaises(Exception, lambda: GetImage(_REMOTE, '/instances/%s/preview' % i, headers = { 'Accept' : 'application/pdf' })) |
|
69
83fd88230097
test_media_encodings
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
68
diff
changeset
|
2974 |
|
83fd88230097
test_media_encodings
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
68
diff
changeset
|
2975 |
|
83fd88230097
test_media_encodings
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
68
diff
changeset
|
2976 |
|
83fd88230097
test_media_encodings
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
68
diff
changeset
|
2977 def test_media_encodings(self): |
|
83fd88230097
test_media_encodings
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
68
diff
changeset
|
2978 ascii = UploadInstance(_REMOTE, 'Knee/T1/IM-0001-0001.dcm')['ID'] |
|
83fd88230097
test_media_encodings
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
68
diff
changeset
|
2979 latin1 = UploadInstance(_REMOTE, 'Brainix/Epi/IM-0001-0001.dcm')['ID'] |
|
83fd88230097
test_media_encodings
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
68
diff
changeset
|
2980 latin2 = UploadInstance(_REMOTE, 'MarekLatin2.dcm')['ID'] |
|
83fd88230097
test_media_encodings
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
68
diff
changeset
|
2981 |
|
83fd88230097
test_media_encodings
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
68
diff
changeset
|
2982 tmp = DoPost(_REMOTE, '/tools/create-media', [ascii,latin1,latin2]) |
|
83fd88230097
test_media_encodings
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
68
diff
changeset
|
2983 z = zipfile.ZipFile(StringIO(tmp), "r") |
|
83fd88230097
test_media_encodings
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
68
diff
changeset
|
2984 |
|
83fd88230097
test_media_encodings
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
68
diff
changeset
|
2985 self.assertEqual(4, len(z.namelist())) |
|
83fd88230097
test_media_encodings
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
68
diff
changeset
|
2986 self.assertTrue('IMAGES/IM0' in z.namelist()) |
|
83fd88230097
test_media_encodings
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
68
diff
changeset
|
2987 self.assertTrue('IMAGES/IM1' in z.namelist()) |
|
83fd88230097
test_media_encodings
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
68
diff
changeset
|
2988 self.assertTrue('IMAGES/IM2' in z.namelist()) |
|
83fd88230097
test_media_encodings
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
68
diff
changeset
|
2989 self.assertTrue('DICOMDIR' in z.namelist()) |
|
83fd88230097
test_media_encodings
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
68
diff
changeset
|
2990 |
|
83fd88230097
test_media_encodings
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
68
diff
changeset
|
2991 try: |
|
83fd88230097
test_media_encodings
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
68
diff
changeset
|
2992 os.remove('/tmp/DICOMDIR') |
|
83fd88230097
test_media_encodings
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
68
diff
changeset
|
2993 except: |
|
83fd88230097
test_media_encodings
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
68
diff
changeset
|
2994 # The file does not exist |
|
83fd88230097
test_media_encodings
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
68
diff
changeset
|
2995 pass |
|
83fd88230097
test_media_encodings
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
68
diff
changeset
|
2996 |
|
83fd88230097
test_media_encodings
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
68
diff
changeset
|
2997 z.extract('DICOMDIR', '/tmp') |
|
83fd88230097
test_media_encodings
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
68
diff
changeset
|
2998 a = subprocess.check_output([ FindExecutable('dciodvfy'), '/tmp/DICOMDIR' ], |
|
83fd88230097
test_media_encodings
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
68
diff
changeset
|
2999 stderr = subprocess.STDOUT).split('\n') |
|
83fd88230097
test_media_encodings
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
68
diff
changeset
|
3000 |
|
83fd88230097
test_media_encodings
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
68
diff
changeset
|
3001 a = subprocess.check_output([ FindExecutable('dcentvfy'), '/tmp/DICOMDIR' ], |
|
83fd88230097
test_media_encodings
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
68
diff
changeset
|
3002 stderr = subprocess.STDOUT).split('\n') |
|
83fd88230097
test_media_encodings
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
68
diff
changeset
|
3003 self.assertEqual(1, len(a)) |
|
83fd88230097
test_media_encodings
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
68
diff
changeset
|
3004 self.assertEqual('', a[0]) |
|
83fd88230097
test_media_encodings
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
68
diff
changeset
|
3005 |
|
83fd88230097
test_media_encodings
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
68
diff
changeset
|
3006 a = subprocess.check_output([ FindExecutable('dcm2xml'), '/tmp/DICOMDIR' ]) |
|
83fd88230097
test_media_encodings
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
68
diff
changeset
|
3007 self.assertTrue(re.search('1.3.46.670589.11.17521.5.0.3124.2008081908590448738', a) != None) |
|
83fd88230097
test_media_encodings
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
68
diff
changeset
|
3008 self.assertTrue(re.search('1.3.46.670589.11.0.0.11.4.2.0.8743.5.5396.2006120114333648576', a) != None) |
|
83fd88230097
test_media_encodings
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
68
diff
changeset
|
3009 self.assertTrue(re.search('1.2.826.0.1.3680043.2.1569.1.4.323026757.1700.1399452091.57', a) != None) |
|
83fd88230097
test_media_encodings
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
68
diff
changeset
|
3010 |
|
83fd88230097
test_media_encodings
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
68
diff
changeset
|
3011 os.remove('/tmp/DICOMDIR') |
|
71
48740070cbf1
TDD: tests for ongoing development of counter tags in C-Find
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
70
diff
changeset
|
3012 |
|
48740070cbf1
TDD: tests for ongoing development of counter tags in C-Find
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
70
diff
changeset
|
3013 |
|
48740070cbf1
TDD: tests for ongoing development of counter tags in C-Find
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
70
diff
changeset
|
3014 def test_findscu_counters(self): |
|
48740070cbf1
TDD: tests for ongoing development of counter tags in C-Find
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
70
diff
changeset
|
3015 UploadInstance(_REMOTE, 'Comunix/Ct/IM-0001-0001.dcm') |
|
48740070cbf1
TDD: tests for ongoing development of counter tags in C-Find
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
70
diff
changeset
|
3016 UploadInstance(_REMOTE, 'Comunix/Pet/IM-0001-0001.dcm') |
|
48740070cbf1
TDD: tests for ongoing development of counter tags in C-Find
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
70
diff
changeset
|
3017 UploadInstance(_REMOTE, 'Comunix/Pet/IM-0001-0002.dcm') |
|
48740070cbf1
TDD: tests for ongoing development of counter tags in C-Find
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
70
diff
changeset
|
3018 |
|
48740070cbf1
TDD: tests for ongoing development of counter tags in C-Find
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
70
diff
changeset
|
3019 i = CallFindScu([ '-k', '0008,0052=PATIENT', '-k', 'NumberOfPatientRelatedStudies' ]) |
|
48740070cbf1
TDD: tests for ongoing development of counter tags in C-Find
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
70
diff
changeset
|
3020 s = re.findall('\(0020,1200\).*?\[(.*?)\]', i) |
|
48740070cbf1
TDD: tests for ongoing development of counter tags in C-Find
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
70
diff
changeset
|
3021 self.assertEqual(1, len(s)) |
|
48740070cbf1
TDD: tests for ongoing development of counter tags in C-Find
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
70
diff
changeset
|
3022 self.assertTrue('1 ' in s) |
|
48740070cbf1
TDD: tests for ongoing development of counter tags in C-Find
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
70
diff
changeset
|
3023 |
|
48740070cbf1
TDD: tests for ongoing development of counter tags in C-Find
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
70
diff
changeset
|
3024 i = CallFindScu([ '-k', '0008,0052=PATIENT', '-k', 'NumberOfPatientRelatedSeries' ]) |
|
48740070cbf1
TDD: tests for ongoing development of counter tags in C-Find
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
70
diff
changeset
|
3025 s = re.findall('\(0020,1202\).*?\[(.*?)\]', i) |
|
48740070cbf1
TDD: tests for ongoing development of counter tags in C-Find
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
70
diff
changeset
|
3026 self.assertEqual(1, len(s)) |
|
48740070cbf1
TDD: tests for ongoing development of counter tags in C-Find
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
70
diff
changeset
|
3027 self.assertTrue('2 ' in s) |
|
48740070cbf1
TDD: tests for ongoing development of counter tags in C-Find
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
70
diff
changeset
|
3028 |
|
48740070cbf1
TDD: tests for ongoing development of counter tags in C-Find
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
70
diff
changeset
|
3029 i = CallFindScu([ '-k', '0008,0052=PATIENT', '-k', 'NumberOfPatientRelatedInstances' ]) |
|
48740070cbf1
TDD: tests for ongoing development of counter tags in C-Find
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
70
diff
changeset
|
3030 s = re.findall('\(0020,1204\).*?\[(.*?)\]', i) |
|
48740070cbf1
TDD: tests for ongoing development of counter tags in C-Find
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
70
diff
changeset
|
3031 self.assertEqual(1, len(s)) |
|
48740070cbf1
TDD: tests for ongoing development of counter tags in C-Find
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
70
diff
changeset
|
3032 self.assertTrue('3 ' in s) |
|
48740070cbf1
TDD: tests for ongoing development of counter tags in C-Find
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
70
diff
changeset
|
3033 |
|
48740070cbf1
TDD: tests for ongoing development of counter tags in C-Find
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
70
diff
changeset
|
3034 i = CallFindScu([ '-k', '0008,0052=STUDY', '-k', 'NumberOfStudyRelatedSeries' ]) |
|
48740070cbf1
TDD: tests for ongoing development of counter tags in C-Find
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
70
diff
changeset
|
3035 s = re.findall('\(0020,1206\).*?\[(.*?)\]', i) |
|
48740070cbf1
TDD: tests for ongoing development of counter tags in C-Find
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
70
diff
changeset
|
3036 self.assertEqual(1, len(s)) |
|
48740070cbf1
TDD: tests for ongoing development of counter tags in C-Find
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
70
diff
changeset
|
3037 self.assertTrue('2 ' in s) |
|
48740070cbf1
TDD: tests for ongoing development of counter tags in C-Find
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
70
diff
changeset
|
3038 |
|
48740070cbf1
TDD: tests for ongoing development of counter tags in C-Find
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
70
diff
changeset
|
3039 i = CallFindScu([ '-k', '0008,0052=STUDY', '-k', 'NumberOfStudyRelatedInstances' ]) |
|
48740070cbf1
TDD: tests for ongoing development of counter tags in C-Find
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
70
diff
changeset
|
3040 s = re.findall('\(0020,1208\).*?\[(.*?)\]', i) |
|
48740070cbf1
TDD: tests for ongoing development of counter tags in C-Find
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
70
diff
changeset
|
3041 self.assertEqual(1, len(s)) |
|
48740070cbf1
TDD: tests for ongoing development of counter tags in C-Find
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
70
diff
changeset
|
3042 self.assertTrue('3 ' in s) |
|
48740070cbf1
TDD: tests for ongoing development of counter tags in C-Find
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
70
diff
changeset
|
3043 |
|
48740070cbf1
TDD: tests for ongoing development of counter tags in C-Find
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
70
diff
changeset
|
3044 i = CallFindScu([ '-k', '0008,0052=SERIES', '-k', 'NumberOfSeriesRelatedInstances' ]) |
|
48740070cbf1
TDD: tests for ongoing development of counter tags in C-Find
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
70
diff
changeset
|
3045 s = re.findall('\(0020,1209\).*?\[(.*?)\]', i) |
|
48740070cbf1
TDD: tests for ongoing development of counter tags in C-Find
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
70
diff
changeset
|
3046 self.assertEqual(2, len(s)) |
|
48740070cbf1
TDD: tests for ongoing development of counter tags in C-Find
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
70
diff
changeset
|
3047 self.assertTrue('1 ' in s) |
|
48740070cbf1
TDD: tests for ongoing development of counter tags in C-Find
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
70
diff
changeset
|
3048 self.assertTrue('2 ' in s) |
|
48740070cbf1
TDD: tests for ongoing development of counter tags in C-Find
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
70
diff
changeset
|
3049 |
|
48740070cbf1
TDD: tests for ongoing development of counter tags in C-Find
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
70
diff
changeset
|
3050 i = CallFindScu([ '-k', '0008,0052=STUDY', '-k', 'ModalitiesInStudy' ]) |
|
48740070cbf1
TDD: tests for ongoing development of counter tags in C-Find
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
70
diff
changeset
|
3051 s = re.findall('\(0008,0061\).*?\[(.*?)\]', i) |
|
48740070cbf1
TDD: tests for ongoing development of counter tags in C-Find
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
70
diff
changeset
|
3052 self.assertEqual(1, len(s)) |
|
48740070cbf1
TDD: tests for ongoing development of counter tags in C-Find
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
70
diff
changeset
|
3053 t = map(lambda x: x.strip(), s[0].split('\\')) |
|
48740070cbf1
TDD: tests for ongoing development of counter tags in C-Find
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
70
diff
changeset
|
3054 self.assertTrue('PT' in t) |
|
48740070cbf1
TDD: tests for ongoing development of counter tags in C-Find
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
70
diff
changeset
|
3055 self.assertTrue('CT' in t) |
|
48740070cbf1
TDD: tests for ongoing development of counter tags in C-Find
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
70
diff
changeset
|
3056 |
|
48740070cbf1
TDD: tests for ongoing development of counter tags in C-Find
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
70
diff
changeset
|
3057 i = CallFindScu([ '-k', '0008,0052=STUDY', '-k', 'SOPClassesInStudy' ]) |
|
48740070cbf1
TDD: tests for ongoing development of counter tags in C-Find
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
70
diff
changeset
|
3058 s = re.findall('\(0008,0062\).*?\[(.*?)\]', i) |
|
48740070cbf1
TDD: tests for ongoing development of counter tags in C-Find
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
70
diff
changeset
|
3059 self.assertEqual(1, len(s)) |
|
176
48cc188ffb09
strip trailing 0 char that appears with some findscu versions
am@osimis.io
parents:
175
diff
changeset
|
3060 t = map(lambda x: x.strip('\x00'), s[0].split('\\')) |
|
71
48740070cbf1
TDD: tests for ongoing development of counter tags in C-Find
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
70
diff
changeset
|
3061 self.assertTrue('1.2.840.10008.5.1.4.1.1.2' in t) |
|
48740070cbf1
TDD: tests for ongoing development of counter tags in C-Find
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
70
diff
changeset
|
3062 self.assertTrue('1.2.840.10008.5.1.4.1.1.128' in t) |
|
48740070cbf1
TDD: tests for ongoing development of counter tags in C-Find
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
70
diff
changeset
|
3063 |
|
48740070cbf1
TDD: tests for ongoing development of counter tags in C-Find
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
70
diff
changeset
|
3064 |
|
78
b89af51797ff
test_decode_transfer_syntax
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
74
diff
changeset
|
3065 def test_decode_transfer_syntax(self): |
|
b89af51797ff
test_decode_transfer_syntax
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
74
diff
changeset
|
3066 def Check(t, md5): |
|
b89af51797ff
test_decode_transfer_syntax
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
74
diff
changeset
|
3067 i = UploadInstance(_REMOTE, 'TransferSyntaxes/%s.dcm' % t)['ID'] |
|
b89af51797ff
test_decode_transfer_syntax
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
74
diff
changeset
|
3068 |
|
89
74b7b9aed5f8
test TransferSyntax metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
87
diff
changeset
|
3069 if t != '1.2.840.10008.1.2': # This file has no meta header |
|
74b7b9aed5f8
test TransferSyntax metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
87
diff
changeset
|
3070 transferSyntax = DoGet(_REMOTE, '/instances/%s/metadata/TransferSyntax' % i) |
|
74b7b9aed5f8
test TransferSyntax metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
87
diff
changeset
|
3071 self.assertEqual(t, transferSyntax) |
|
74b7b9aed5f8
test TransferSyntax metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
87
diff
changeset
|
3072 |
|
78
b89af51797ff
test_decode_transfer_syntax
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
74
diff
changeset
|
3073 if md5 == None: |
|
b89af51797ff
test_decode_transfer_syntax
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
74
diff
changeset
|
3074 self.assertRaises(Exception, lambda: DoGet(_REMOTE, '/instances/%s/preview' % i)) |
|
b89af51797ff
test_decode_transfer_syntax
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
74
diff
changeset
|
3075 else: |
|
b89af51797ff
test_decode_transfer_syntax
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
74
diff
changeset
|
3076 m = ComputeMD5(DoGet(_REMOTE, '/instances/%s/preview' % i)) |
|
b89af51797ff
test_decode_transfer_syntax
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
74
diff
changeset
|
3077 self.assertEqual(m, md5) |
|
b89af51797ff
test_decode_transfer_syntax
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
74
diff
changeset
|
3078 |
|
b89af51797ff
test_decode_transfer_syntax
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
74
diff
changeset
|
3079 Check('1.2.840.10008.1.2.1', 'fae08d5415c4c0cd2cdbae4522408631') |
|
b89af51797ff
test_decode_transfer_syntax
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
74
diff
changeset
|
3080 Check('1.2.840.10008.1.2.2', 'f3d9784768b8feb54d6a50b6d5c37682') |
| 323 | 3081 Check('1.2.840.10008.1.2.4.50', '496326046974eea718dbc16b997c646b') # TODO - Doesn't work with GDCM 3.0.7 alone |
|
78
b89af51797ff
test_decode_transfer_syntax
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
74
diff
changeset
|
3082 Check('1.2.840.10008.1.2.4.51', 'ccbe75909fe5c9f7361b48416a53fc41') |
|
b89af51797ff
test_decode_transfer_syntax
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
74
diff
changeset
|
3083 Check('1.2.840.10008.1.2.4.57', '7bbefe11d976b1be4e568915c6a82fc3') |
|
b89af51797ff
test_decode_transfer_syntax
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
74
diff
changeset
|
3084 Check('1.2.840.10008.1.2.4.70', '7132cfbc457305b04b59787030c785d2') |
|
b89af51797ff
test_decode_transfer_syntax
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
74
diff
changeset
|
3085 Check('1.2.840.10008.1.2.4.80', '6ff51ae525d362e0d04f550a64075a0e') |
|
b89af51797ff
test_decode_transfer_syntax
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
74
diff
changeset
|
3086 Check('1.2.840.10008.1.2.4.81', '801579ae7cbf28e604ea74f2c99fa2ca') |
|
b89af51797ff
test_decode_transfer_syntax
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
74
diff
changeset
|
3087 Check('1.2.840.10008.1.2.5', '6ff51ae525d362e0d04f550a64075a0e') # RLE, supported since Orthanc 1.0.1 |
|
b89af51797ff
test_decode_transfer_syntax
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
74
diff
changeset
|
3088 Check('1.2.840.10008.1.2', 'd54aed9f67a100984b42942cc2e9939b') |
|
299
c2144cf4bd83
HasGdcmPlugin() test
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
293
diff
changeset
|
3089 |
|
c2144cf4bd83
HasGdcmPlugin() test
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
293
diff
changeset
|
3090 # JPEG2k image, not supported without GDCM plugin |
| 304 | 3091 if not HasGdcmPlugin(_REMOTE): |
|
299
c2144cf4bd83
HasGdcmPlugin() test
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
293
diff
changeset
|
3092 Check('1.2.840.10008.1.2.4.90', None) |
|
c2144cf4bd83
HasGdcmPlugin() test
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
293
diff
changeset
|
3093 Check('1.2.840.10008.1.2.4.91', None) |
| 79 | 3094 |
| 3095 | |
| 3096 def test_raw_frame(self): | |
| 3097 s = UploadInstance(_REMOTE, 'Issue22.dcm')['ID'] | |
| 3098 self.assertEqual(24, len(DoGet(_REMOTE, '/instances/%s/frames' % s))) | |
| 3099 a = DoGet(_REMOTE, '/instances/%s/frames/0/raw' % s) | |
| 3100 self.assertEqual(512 * 512 * 2, len(a)) | |
| 3101 self.assertEqual(512 * 512 * 2, len(DoGet(_REMOTE, '/instances/%s/frames/23/raw' % s))) | |
| 3102 self.assertRaises(Exception, lambda: DoGet(_REMOTE, '/instances/%s/frames/24/raw' % s)) | |
| 3103 self.assertEqual('1914287dc4d958eca21fdaacfb3482fa', ComputeMD5(a)) | |
| 3104 | |
| 3105 s = UploadInstance(_REMOTE, 'Multiframe.dcm')['ID'] | |
| 3106 self.assertEqual(76, len(DoGet(_REMOTE, '/instances/%s/frames' % s))) | |
| 3107 self.assertEqual(186274, len(DoGet(_REMOTE, '/instances/%s/frames/0/raw' % s))) | |
| 3108 self.assertEqual(189424, len(DoGet(_REMOTE, '/instances/%s/frames/75/raw' % s))) | |
| 3109 self.assertRaises(Exception, lambda: DoGet(_REMOTE, '/instances/%s/frames/76/raw' % s)) | |
| 3110 im = GetImage(_REMOTE, '/instances/%s/frames/0/raw' % s) | |
| 3111 self.assertEqual("L", im.mode) | |
| 3112 self.assertEqual(512, im.size[0]) | |
| 3113 self.assertEqual(512, im.size[1]) | |
| 3114 | |
| 3115 # Test an image with 2 JPEG frames spread over multiple fragments | |
| 3116 s = UploadInstance(_REMOTE, 'LenaTwiceWithFragments.dcm')['ID'] | |
| 3117 self.assertEqual(2, len(DoGet(_REMOTE, '/instances/%s/frames' % s))) | |
| 3118 a = DoGet(_REMOTE, '/instances/%s/frames/0/raw' % s) | |
| 3119 b = DoGet(_REMOTE, '/instances/%s/frames/1/raw' % s) | |
| 3120 self.assertEqual(69214, len(a)) | |
| 3121 self.assertEqual(ComputeMD5(a), ComputeMD5(b)) | |
| 3122 self.assertRaises(Exception, lambda: DoGet(_REMOTE, '/instances/%s/frames/2/raw' % s)) | |
| 3123 im = GetImage(_REMOTE, '/instances/%s/frames/0/raw' % s) | |
| 3124 self.assertEqual("RGB", im.mode) | |
| 3125 self.assertEqual(512, im.size[0]) | |
| 3126 self.assertEqual(512, im.size[1]) | |
| 323 | 3127 im = GetImage(_REMOTE, '/instances/%s/frames/0/preview' % s) # TODO - Doesn't work with GDCM 3.0.7 alone |
| 79 | 3128 self.assertEqual("RGB", im.mode) |
| 3129 self.assertEqual(512, im.size[0]) | |
| 3130 self.assertEqual(512, im.size[1]) | |
| 81 | 3131 |
| 3132 | |
| 3133 | |
| 3134 def test_rest_movescu(self): | |
| 3135 self.assertEqual(0, len(DoGet(_REMOTE, '/patients'))) | |
| 3136 | |
| 3137 # Upload 4 instances | |
| 3138 UploadInstance(_REMOTE, 'Brainix/Flair/IM-0001-0001.dcm') | |
| 3139 UploadInstance(_REMOTE, 'Brainix/Flair/IM-0001-0002.dcm') | |
| 3140 UploadInstance(_REMOTE, 'Brainix/Epi/IM-0001-0001.dcm') | |
| 3141 UploadInstance(_REMOTE, 'Knee/T2/IM-0001-0001.dcm') | |
| 3142 | |
| 3143 self.assertEqual(2, len(DoGet(_REMOTE, '/patients'))) | |
| 3144 for p in DoGet(_REMOTE, '/patients'): | |
| 3145 DoPost(_REMOTE, '/modalities/orthanctest/store', p) | |
| 3146 DoDelete(_REMOTE, '/patients/%s' % p) | |
| 3147 | |
| 3148 self.assertEqual(0, len(DoGet(_REMOTE, '/patients'))) | |
| 3149 | |
| 3150 # Upload instance Brainix/Flair/IM-0001-0001.dcm | |
| 3151 DoPost(_REMOTE, '/modalities/orthanctest/move', { 'Level' : 'Instance', | |
| 3152 'Resources' : [ | |
| 3153 { | |
| 3154 'StudyInstanceUID' : '2.16.840.1.113669.632.20.1211.10000357775', | |
| 3155 'SeriesInstanceUID' : '1.3.46.670589.11.0.0.11.4.2.0.8743.5.5396.2006120114285654497', | |
| 3156 'SOPInstanceUID' : '1.3.46.670589.11.0.0.11.4.2.0.8743.5.5396.2006120114314079549', | |
| 3157 } | |
| 3158 ]}) | |
| 3159 | |
| 3160 # Upload series Brainix/Flair/* | |
| 3161 self.assertEqual(1, len(DoGet(_REMOTE, '/patients'))) | |
| 3162 self.assertEqual(1, len(DoGet(_REMOTE, '/studies'))) | |
| 3163 self.assertEqual(1, len(DoGet(_REMOTE, '/series'))) | |
| 3164 self.assertEqual(1, len(DoGet(_REMOTE, '/instances'))) | |
| 3165 | |
| 3166 DoPost(_REMOTE, '/modalities/orthanctest/move', { 'Level' : 'Series', | |
| 3167 'Resources' : [ | |
| 3168 { | |
| 3169 'StudyInstanceUID' : '2.16.840.1.113669.632.20.1211.10000357775', | |
| 3170 'SeriesInstanceUID' : '1.3.46.670589.11.0.0.11.4.2.0.8743.5.5396.2006120114285654497', | |
| 3171 } | |
| 3172 ]}) | |
| 3173 self.assertEqual(1, len(DoGet(_REMOTE, '/patients'))) | |
| 3174 self.assertEqual(1, len(DoGet(_REMOTE, '/studies'))) | |
| 3175 self.assertEqual(1, len(DoGet(_REMOTE, '/series'))) | |
| 3176 self.assertEqual(2, len(DoGet(_REMOTE, '/instances'))) | |
| 3177 | |
| 3178 # Upload series Brainix/Epi/* | |
| 3179 DoPost(_REMOTE, '/modalities/orthanctest/move', { 'Level' : 'Series', | |
| 3180 'Resources' : [ | |
| 3181 { | |
| 3182 'StudyInstanceUID' : '2.16.840.1.113669.632.20.1211.10000357775', | |
| 3183 'SeriesInstanceUID' : '1.3.46.670589.11.0.0.11.4.2.0.8743.5.5396.2006120114314125550', | |
| 3184 } | |
| 3185 ]}) | |
| 3186 self.assertEqual(1, len(DoGet(_REMOTE, '/patients'))) | |
| 3187 self.assertEqual(1, len(DoGet(_REMOTE, '/studies'))) | |
| 3188 self.assertEqual(2, len(DoGet(_REMOTE, '/series'))) | |
| 3189 self.assertEqual(3, len(DoGet(_REMOTE, '/instances'))) | |
| 3190 | |
| 3191 # Upload study Knee/* | |
| 3192 DoPost(_REMOTE, '/modalities/orthanctest/move', { 'Level' : 'Study', | |
| 3193 'Resources' : [ | |
| 3194 { | |
| 3195 'StudyInstanceUID' : '2.16.840.1.113669.632.20.121711.10000160881', | |
| 3196 } | |
| 3197 ]}) | |
| 3198 self.assertEqual(2, len(DoGet(_REMOTE, '/patients'))) | |
| 3199 self.assertEqual(2, len(DoGet(_REMOTE, '/studies'))) | |
| 3200 self.assertEqual(3, len(DoGet(_REMOTE, '/series'))) | |
| 3201 self.assertEqual(4, len(DoGet(_REMOTE, '/instances'))) | |
| 3202 | |
| 3203 # Reset | |
| 3204 for p in DoGet(_REMOTE, '/patients'): | |
| 3205 DoDelete(_REMOTE, '/patients/%s' % p) | |
| 3206 | |
| 3207 self.assertEqual(0, len(DoGet(_REMOTE, '/patients'))) | |
| 3208 | |
| 3209 | |
| 3210 # Upload all at once | |
| 3211 DoPost(_REMOTE, '/modalities/orthanctest/move', { 'Level' : 'Study', | |
| 3212 'Resources' : [ | |
| 3213 { | |
| 3214 'StudyInstanceUID' : '2.16.840.1.113669.632.20.121711.10000160881', | |
| 3215 }, | |
| 3216 { | |
| 3217 'StudyInstanceUID' : '2.16.840.1.113669.632.20.1211.10000357775', | |
| 3218 } | |
| 3219 ]}) | |
| 3220 self.assertEqual(2, len(DoGet(_REMOTE, '/patients'))) | |
| 3221 self.assertEqual(2, len(DoGet(_REMOTE, '/studies'))) | |
| 3222 self.assertEqual(3, len(DoGet(_REMOTE, '/series'))) | |
| 3223 self.assertEqual(4, len(DoGet(_REMOTE, '/instances'))) | |
| 3224 | |
|
86
0401ef51f5c1
test_reconstruct_json
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
83
diff
changeset
|
3225 |
|
0401ef51f5c1
test_reconstruct_json
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
83
diff
changeset
|
3226 |
|
0401ef51f5c1
test_reconstruct_json
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
83
diff
changeset
|
3227 def test_reconstruct_json(self): |
|
0401ef51f5c1
test_reconstruct_json
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
83
diff
changeset
|
3228 self.assertEqual(0, len(DoGet(_REMOTE, '/patients'))) |
|
0401ef51f5c1
test_reconstruct_json
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
83
diff
changeset
|
3229 |
|
0401ef51f5c1
test_reconstruct_json
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
83
diff
changeset
|
3230 instance = UploadInstance(_REMOTE, 'DummyCT.dcm')['ID'] |
|
0401ef51f5c1
test_reconstruct_json
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
83
diff
changeset
|
3231 first = DoGet(_REMOTE, '/instances/%s/tags' % instance) |
|
0401ef51f5c1
test_reconstruct_json
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
83
diff
changeset
|
3232 |
|
0401ef51f5c1
test_reconstruct_json
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
83
diff
changeset
|
3233 self.assertEqual('TWINOW', first['0008,1010']['Value']) |
|
0401ef51f5c1
test_reconstruct_json
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
83
diff
changeset
|
3234 self.assertEqual(2, len(DoGet(_REMOTE, '/instances/%s/attachments' % instance))) |
|
0401ef51f5c1
test_reconstruct_json
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
83
diff
changeset
|
3235 |
|
0401ef51f5c1
test_reconstruct_json
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
83
diff
changeset
|
3236 # Cannot delete the "DICOM" attachment |
|
0401ef51f5c1
test_reconstruct_json
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
83
diff
changeset
|
3237 self.assertRaises(Exception, lambda: DoDelete(_REMOTE, '/instances/%s/attachments/dicom' % instance)) |
|
0401ef51f5c1
test_reconstruct_json
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
83
diff
changeset
|
3238 |
|
0401ef51f5c1
test_reconstruct_json
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
83
diff
changeset
|
3239 # Can delete the "DICOM as JSON" attachment |
|
0401ef51f5c1
test_reconstruct_json
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
83
diff
changeset
|
3240 r = DoDelete(_REMOTE, '/instances/%s/attachments/dicom-as-json' % instance) |
|
0401ef51f5c1
test_reconstruct_json
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
83
diff
changeset
|
3241 self.assertTrue(type(r) is dict and len(r) == 0) |
|
0401ef51f5c1
test_reconstruct_json
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
83
diff
changeset
|
3242 |
|
0401ef51f5c1
test_reconstruct_json
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
83
diff
changeset
|
3243 # Only the "DICOM" attachment subsists |
|
0401ef51f5c1
test_reconstruct_json
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
83
diff
changeset
|
3244 self.assertEqual(1, len(DoGet(_REMOTE, '/instances/%s/attachments' % instance))) |
|
0401ef51f5c1
test_reconstruct_json
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
83
diff
changeset
|
3245 |
|
0401ef51f5c1
test_reconstruct_json
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
83
diff
changeset
|
3246 # Cannot manually reconstruct the "DICOM as JSON" attachment |
|
0401ef51f5c1
test_reconstruct_json
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
83
diff
changeset
|
3247 self.assertRaises(Exception, lambda: DoPut(_REMOTE, '/patients/%s/attachments/dicom-as-json' % patient, 'hello')) |
|
0401ef51f5c1
test_reconstruct_json
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
83
diff
changeset
|
3248 |
|
0401ef51f5c1
test_reconstruct_json
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
83
diff
changeset
|
3249 # Transparently reconstruct the "DICOM as JSON" attachment |
|
0401ef51f5c1
test_reconstruct_json
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
83
diff
changeset
|
3250 self.assertRaises(Exception, lambda: DoGet(_REMOTE, '/instances/%s/attachments/dicom-as-json' % instance)) |
|
0401ef51f5c1
test_reconstruct_json
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
83
diff
changeset
|
3251 second = DoGet(_REMOTE, '/instances/%s/tags' % instance) |
|
0401ef51f5c1
test_reconstruct_json
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
83
diff
changeset
|
3252 self.assertEqual(2, len(DoGet(_REMOTE, '/instances/%s/attachments' % instance))) |
|
0401ef51f5c1
test_reconstruct_json
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
83
diff
changeset
|
3253 |
|
0401ef51f5c1
test_reconstruct_json
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
83
diff
changeset
|
3254 third = DoGet(_REMOTE, '/instances/%s/attachments/dicom-as-json/data' % instance) |
|
0401ef51f5c1
test_reconstruct_json
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
83
diff
changeset
|
3255 self.assertEqual(str(first), str(second)) |
|
0401ef51f5c1
test_reconstruct_json
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
83
diff
changeset
|
3256 self.assertEqual(str(first), str(third)) |
|
87
4b24faec842b
test_reconstruct_json2 + test_private_tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
86
diff
changeset
|
3257 |
|
4b24faec842b
test_reconstruct_json2 + test_private_tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
86
diff
changeset
|
3258 |
|
4b24faec842b
test_reconstruct_json2 + test_private_tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
86
diff
changeset
|
3259 def test_reconstruct_json2(self): |
|
4b24faec842b
test_reconstruct_json2 + test_private_tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
86
diff
changeset
|
3260 self.assertEqual(0, len(DoGet(_REMOTE, '/patients'))) |
|
4b24faec842b
test_reconstruct_json2 + test_private_tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
86
diff
changeset
|
3261 |
|
4b24faec842b
test_reconstruct_json2 + test_private_tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
86
diff
changeset
|
3262 a = UploadInstance(_REMOTE, 'Brainix/Flair/IM-0001-0001.dcm')['ID'] |
|
4b24faec842b
test_reconstruct_json2 + test_private_tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
86
diff
changeset
|
3263 b = UploadInstance(_REMOTE, 'Knee/T2/IM-0001-0001.dcm')['ID'] |
|
4b24faec842b
test_reconstruct_json2 + test_private_tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
86
diff
changeset
|
3264 |
|
4b24faec842b
test_reconstruct_json2 + test_private_tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
86
diff
changeset
|
3265 self.assertEqual('BRAINIX', DoGet(_REMOTE, '/instances/%s/tags?simplify' % a)['PatientName']) |
|
4b24faec842b
test_reconstruct_json2 + test_private_tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
86
diff
changeset
|
3266 self.assertEqual('KNEE', DoGet(_REMOTE, '/instances/%s/tags?simplify' % b)['PatientName']) |
|
4b24faec842b
test_reconstruct_json2 + test_private_tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
86
diff
changeset
|
3267 |
|
4b24faec842b
test_reconstruct_json2 + test_private_tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
86
diff
changeset
|
3268 self.assertEqual(2, len(DoGet(_REMOTE, '/instances/%s/attachments' % a))) |
|
4b24faec842b
test_reconstruct_json2 + test_private_tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
86
diff
changeset
|
3269 self.assertEqual(2, len(DoGet(_REMOTE, '/instances/%s/attachments' % b))) |
|
4b24faec842b
test_reconstruct_json2 + test_private_tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
86
diff
changeset
|
3270 |
|
4b24faec842b
test_reconstruct_json2 + test_private_tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
86
diff
changeset
|
3271 DoPost(_REMOTE, '/tools/invalidate-tags', '', 'text/plain') |
|
4b24faec842b
test_reconstruct_json2 + test_private_tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
86
diff
changeset
|
3272 |
|
4b24faec842b
test_reconstruct_json2 + test_private_tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
86
diff
changeset
|
3273 self.assertEqual(1, len(DoGet(_REMOTE, '/instances/%s/attachments' % a))) |
|
4b24faec842b
test_reconstruct_json2 + test_private_tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
86
diff
changeset
|
3274 self.assertEqual(1, len(DoGet(_REMOTE, '/instances/%s/attachments' % b))) |
|
4b24faec842b
test_reconstruct_json2 + test_private_tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
86
diff
changeset
|
3275 |
|
4b24faec842b
test_reconstruct_json2 + test_private_tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
86
diff
changeset
|
3276 self.assertEqual('BRAINIX', DoGet(_REMOTE, '/instances/%s/tags?simplify' % a)['PatientName']) |
|
4b24faec842b
test_reconstruct_json2 + test_private_tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
86
diff
changeset
|
3277 self.assertEqual('KNEE', DoGet(_REMOTE, '/instances/%s/tags?simplify' % b)['PatientName']) |
|
4b24faec842b
test_reconstruct_json2 + test_private_tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
86
diff
changeset
|
3278 |
|
4b24faec842b
test_reconstruct_json2 + test_private_tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
86
diff
changeset
|
3279 self.assertEqual(2, len(DoGet(_REMOTE, '/instances/%s/attachments' % a))) |
|
4b24faec842b
test_reconstruct_json2 + test_private_tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
86
diff
changeset
|
3280 self.assertEqual(2, len(DoGet(_REMOTE, '/instances/%s/attachments' % b))) |
|
4b24faec842b
test_reconstruct_json2 + test_private_tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
86
diff
changeset
|
3281 |
|
4b24faec842b
test_reconstruct_json2 + test_private_tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
86
diff
changeset
|
3282 |
|
4b24faec842b
test_reconstruct_json2 + test_private_tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
86
diff
changeset
|
3283 def test_private_tags(self): |
|
4b24faec842b
test_reconstruct_json2 + test_private_tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
86
diff
changeset
|
3284 i = UploadInstance(_REMOTE, 'PrivateMDNTags.dcm')['ID'] |
|
4b24faec842b
test_reconstruct_json2 + test_private_tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
86
diff
changeset
|
3285 t = DoGet(_REMOTE, '/instances/%s/tags?simplify' % i) |
|
4b24faec842b
test_reconstruct_json2 + test_private_tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
86
diff
changeset
|
3286 self.assertEqual('1.2.840.113704.1.111.6320.1342451261.21', t['PET-CT Multi Modality Name']) |
|
4b24faec842b
test_reconstruct_json2 + test_private_tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
86
diff
changeset
|
3287 self.assertEqual('p37s0_na_ctac.img', t['Original Image Filename']) |
|
4b24faec842b
test_reconstruct_json2 + test_private_tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
86
diff
changeset
|
3288 |
|
92
dbcbffb889da
test_findscu_encoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
89
diff
changeset
|
3289 |
|
dbcbffb889da
test_findscu_encoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
89
diff
changeset
|
3290 def test_findscu_encoding(self): |
|
dbcbffb889da
test_findscu_encoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
89
diff
changeset
|
3291 # Check out ../Database/Encodings/Generate.sh |
|
dbcbffb889da
test_findscu_encoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
89
diff
changeset
|
3292 TEST = u'Test-éüäöòДΘĝדصķћ๛ﾈİ' |
|
dbcbffb889da
test_findscu_encoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
89
diff
changeset
|
3293 ENCODINGS = { |
|
dbcbffb889da
test_findscu_encoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
89
diff
changeset
|
3294 'Arabic' : [ 'ISO_IR 127' ], |
|
dbcbffb889da
test_findscu_encoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
89
diff
changeset
|
3295 'Ascii' : [ 'ISO_IR 6' ], # More accurately, ISO 646 |
|
dbcbffb889da
test_findscu_encoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
89
diff
changeset
|
3296 'Cyrillic' : [ 'ISO_IR 144' ], |
|
dbcbffb889da
test_findscu_encoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
89
diff
changeset
|
3297 'Greek' : [ 'ISO_IR 126' ], |
|
dbcbffb889da
test_findscu_encoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
89
diff
changeset
|
3298 'Hebrew' : [ 'ISO_IR 138' ], |
|
dbcbffb889da
test_findscu_encoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
89
diff
changeset
|
3299 'Japanese' : [ 'ISO_IR 13', 'shift-jis' ], |
|
dbcbffb889da
test_findscu_encoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
89
diff
changeset
|
3300 'Latin1' : [ 'ISO_IR 100' ], |
|
dbcbffb889da
test_findscu_encoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
89
diff
changeset
|
3301 'Latin2' : [ 'ISO_IR 101' ], |
|
dbcbffb889da
test_findscu_encoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
89
diff
changeset
|
3302 'Latin3' : [ 'ISO_IR 109' ], |
|
dbcbffb889da
test_findscu_encoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
89
diff
changeset
|
3303 'Latin4' : [ 'ISO_IR 110' ], |
|
dbcbffb889da
test_findscu_encoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
89
diff
changeset
|
3304 'Latin5' : [ 'ISO_IR 148' ], |
|
dbcbffb889da
test_findscu_encoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
89
diff
changeset
|
3305 'Thai' : [ 'ISO_IR 166', 'tis-620' ], |
|
dbcbffb889da
test_findscu_encoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
89
diff
changeset
|
3306 'Utf8' : [ 'ISO_IR 192' ], |
|
dbcbffb889da
test_findscu_encoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
89
diff
changeset
|
3307 } |
|
dbcbffb889da
test_findscu_encoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
89
diff
changeset
|
3308 |
|
dbcbffb889da
test_findscu_encoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
89
diff
changeset
|
3309 for name in ENCODINGS.iterkeys(): |
|
dbcbffb889da
test_findscu_encoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
89
diff
changeset
|
3310 if len(ENCODINGS[name]) == 1: |
|
dbcbffb889da
test_findscu_encoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
89
diff
changeset
|
3311 ENCODINGS[name].append(name.lower()) |
|
dbcbffb889da
test_findscu_encoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
89
diff
changeset
|
3312 |
|
dbcbffb889da
test_findscu_encoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
89
diff
changeset
|
3313 UploadInstance(_REMOTE, 'Encodings/Lena-utf8.dcm') |
|
dbcbffb889da
test_findscu_encoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
89
diff
changeset
|
3314 |
|
dbcbffb889da
test_findscu_encoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
89
diff
changeset
|
3315 for name in ENCODINGS.iterkeys(): |
|
dbcbffb889da
test_findscu_encoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
89
diff
changeset
|
3316 self.assertEqual(name, DoPut(_REMOTE, '/tools/default-encoding', name)) |
|
dbcbffb889da
test_findscu_encoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
89
diff
changeset
|
3317 self.assertEqual(name, DoGet(_REMOTE, '/tools/default-encoding')) |
|
dbcbffb889da
test_findscu_encoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
89
diff
changeset
|
3318 |
|
dbcbffb889da
test_findscu_encoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
89
diff
changeset
|
3319 i = CallFindScu([ '-k', '0008,0052=STUDY', |
|
dbcbffb889da
test_findscu_encoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
89
diff
changeset
|
3320 '-k', 'SpecificCharacterSet', |
|
dbcbffb889da
test_findscu_encoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
89
diff
changeset
|
3321 '-k', 'PatientName' ]) |
|
dbcbffb889da
test_findscu_encoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
89
diff
changeset
|
3322 |
|
dbcbffb889da
test_findscu_encoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
89
diff
changeset
|
3323 characterSet = re.findall('\(0008,0005\).*?\[(.*?)\]', i) |
|
dbcbffb889da
test_findscu_encoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
89
diff
changeset
|
3324 self.assertEqual(1, len(characterSet)) |
|
dbcbffb889da
test_findscu_encoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
89
diff
changeset
|
3325 self.assertEqual(ENCODINGS[name][0], characterSet[0].strip()) |
|
dbcbffb889da
test_findscu_encoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
89
diff
changeset
|
3326 |
|
dbcbffb889da
test_findscu_encoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
89
diff
changeset
|
3327 patientName = re.findall('\(0010,0010\).*?\[(.*?)\]', i) |
|
dbcbffb889da
test_findscu_encoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
89
diff
changeset
|
3328 self.assertEqual(1, len(patientName)) |
|
dbcbffb889da
test_findscu_encoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
89
diff
changeset
|
3329 |
|
dbcbffb889da
test_findscu_encoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
89
diff
changeset
|
3330 expected = TEST.encode(ENCODINGS[name][1], 'ignore') |
|
dbcbffb889da
test_findscu_encoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
89
diff
changeset
|
3331 self.assertEqual(expected, patientName[0].strip()) |
|
dbcbffb889da
test_findscu_encoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
89
diff
changeset
|
3332 |
|
dbcbffb889da
test_findscu_encoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
89
diff
changeset
|
3333 |
|
dbcbffb889da
test_findscu_encoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
89
diff
changeset
|
3334 #for master in ENCODINGS: |
|
dbcbffb889da
test_findscu_encoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
89
diff
changeset
|
3335 for master in [ 'Latin1', 'Utf8', 'Cyrillic' ]: # Shortcut to speedup tests |
|
dbcbffb889da
test_findscu_encoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
89
diff
changeset
|
3336 self.assertEqual(master, DoPut(_REMOTE, '/tools/default-encoding', master)) |
|
dbcbffb889da
test_findscu_encoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
89
diff
changeset
|
3337 self.assertEqual(master, DoGet(_REMOTE, '/tools/default-encoding')) |
|
dbcbffb889da
test_findscu_encoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
89
diff
changeset
|
3338 |
|
dbcbffb889da
test_findscu_encoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
89
diff
changeset
|
3339 for name in ENCODINGS: |
|
dbcbffb889da
test_findscu_encoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
89
diff
changeset
|
3340 DropOrthanc(_REMOTE) |
|
dbcbffb889da
test_findscu_encoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
89
diff
changeset
|
3341 UploadInstance(_REMOTE, 'Encodings/Lena-%s.dcm' % ENCODINGS[name][1]) |
|
dbcbffb889da
test_findscu_encoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
89
diff
changeset
|
3342 |
|
dbcbffb889da
test_findscu_encoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
89
diff
changeset
|
3343 i = CallFindScu([ '-k', '0008,0052=STUDY', |
|
dbcbffb889da
test_findscu_encoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
89
diff
changeset
|
3344 '-k', 'PatientID', |
|
dbcbffb889da
test_findscu_encoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
89
diff
changeset
|
3345 '-k', 'SpecificCharacterSet', |
|
dbcbffb889da
test_findscu_encoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
89
diff
changeset
|
3346 '-k', 'PatientName' ]) |
|
dbcbffb889da
test_findscu_encoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
89
diff
changeset
|
3347 i = i.decode(ENCODINGS[master][1]) |
|
dbcbffb889da
test_findscu_encoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
89
diff
changeset
|
3348 |
|
dbcbffb889da
test_findscu_encoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
89
diff
changeset
|
3349 characterSet = re.findall('\(0008,0005\).*?\[(.*?)\]', i) |
|
dbcbffb889da
test_findscu_encoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
89
diff
changeset
|
3350 self.assertEqual(1, len(characterSet)) |
|
dbcbffb889da
test_findscu_encoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
89
diff
changeset
|
3351 self.assertEqual(ENCODINGS[master][0], characterSet[0].strip()) |
|
dbcbffb889da
test_findscu_encoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
89
diff
changeset
|
3352 |
|
dbcbffb889da
test_findscu_encoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
89
diff
changeset
|
3353 patientId = re.findall('\(0010,0020\).*?\[(.*?)\]', i) |
|
dbcbffb889da
test_findscu_encoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
89
diff
changeset
|
3354 self.assertEqual(1, len(patientId)) |
|
dbcbffb889da
test_findscu_encoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
89
diff
changeset
|
3355 self.assertEqual(ENCODINGS[name][1], patientId[0].strip()) |
|
dbcbffb889da
test_findscu_encoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
89
diff
changeset
|
3356 |
|
dbcbffb889da
test_findscu_encoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
89
diff
changeset
|
3357 patientName = re.findall('\(0010,0010\).*?\[(.*?)\]', i) |
|
dbcbffb889da
test_findscu_encoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
89
diff
changeset
|
3358 self.assertEqual(1, len(patientName)) |
|
dbcbffb889da
test_findscu_encoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
89
diff
changeset
|
3359 |
|
dbcbffb889da
test_findscu_encoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
89
diff
changeset
|
3360 tmp = ENCODINGS[name][1] |
|
dbcbffb889da
test_findscu_encoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
89
diff
changeset
|
3361 expected = TEST.encode(tmp, 'ignore').decode(tmp) |
|
dbcbffb889da
test_findscu_encoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
89
diff
changeset
|
3362 tmp = ENCODINGS[master][1] |
|
dbcbffb889da
test_findscu_encoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
89
diff
changeset
|
3363 expected = expected.encode(tmp, 'ignore').decode(tmp) |
|
dbcbffb889da
test_findscu_encoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
89
diff
changeset
|
3364 |
|
dbcbffb889da
test_findscu_encoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
89
diff
changeset
|
3365 self.assertEqual(expected, patientName[0].strip()) |
|
dbcbffb889da
test_findscu_encoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
89
diff
changeset
|
3366 |
|
dbcbffb889da
test_findscu_encoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
89
diff
changeset
|
3367 |
|
dbcbffb889da
test_findscu_encoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
89
diff
changeset
|
3368 a = DoPost(_REMOTE, '/tools/find', { 'Expand' : True, |
|
dbcbffb889da
test_findscu_encoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
89
diff
changeset
|
3369 'Level' : 'Study', |
|
dbcbffb889da
test_findscu_encoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
89
diff
changeset
|
3370 'Query' : { }}) |
|
dbcbffb889da
test_findscu_encoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
89
diff
changeset
|
3371 self.assertEqual(1, len(a)) |
|
dbcbffb889da
test_findscu_encoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
89
diff
changeset
|
3372 |
|
dbcbffb889da
test_findscu_encoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
89
diff
changeset
|
3373 tmp = ENCODINGS[name][1] |
|
dbcbffb889da
test_findscu_encoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
89
diff
changeset
|
3374 self.assertEqual(TEST.encode(tmp, 'ignore').decode(tmp), a[0]["PatientMainDicomTags"]["PatientName"]) |
|
96
272d1229cb49
test reconstruction of tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
95
diff
changeset
|
3375 |
| 314 | 3376 # Back to UTF-8 |
| 3377 self.assertEqual('Utf8', DoPut(_REMOTE, '/tools/default-encoding', 'Utf8')) | |
| 3378 | |
|
96
272d1229cb49
test reconstruction of tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
95
diff
changeset
|
3379 |
|
272d1229cb49
test reconstruction of tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
95
diff
changeset
|
3380 def test_reconstruct(self): |
|
272d1229cb49
test reconstruction of tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
95
diff
changeset
|
3381 def CompareMainDicomTag(expected, instance, level, tag): |
|
272d1229cb49
test reconstruction of tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
95
diff
changeset
|
3382 self.assertEqual(expected, DoGet(_REMOTE, '/instances/%s/%s' % (instance, level))['MainDicomTags'][tag].strip()) |
|
272d1229cb49
test reconstruction of tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
95
diff
changeset
|
3383 |
|
272d1229cb49
test reconstruction of tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
95
diff
changeset
|
3384 a = UploadInstance(_REMOTE, 'DummyCT.dcm')['ID'] |
|
272d1229cb49
test reconstruction of tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
95
diff
changeset
|
3385 |
|
272d1229cb49
test reconstruction of tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
95
diff
changeset
|
3386 studies = DoGet(_REMOTE, '/studies/') |
|
272d1229cb49
test reconstruction of tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
95
diff
changeset
|
3387 self.assertEqual(1, len(DoGet(_REMOTE, '/patients/'))) |
|
272d1229cb49
test reconstruction of tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
95
diff
changeset
|
3388 self.assertEqual(1, len(studies)) |
|
272d1229cb49
test reconstruction of tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
95
diff
changeset
|
3389 self.assertEqual(1, len(DoGet(_REMOTE, '/series/'))) |
|
272d1229cb49
test reconstruction of tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
95
diff
changeset
|
3390 self.assertEqual(1, len(DoGet(_REMOTE, '/instances/'))) |
|
272d1229cb49
test reconstruction of tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
95
diff
changeset
|
3391 |
|
272d1229cb49
test reconstruction of tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
95
diff
changeset
|
3392 modified = DoPost(_REMOTE, '/studies/%s/modify' % studies[0], { |
|
272d1229cb49
test reconstruction of tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
95
diff
changeset
|
3393 "Replace" : { |
|
272d1229cb49
test reconstruction of tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
95
diff
changeset
|
3394 "StudyDescription" : "hello", |
|
272d1229cb49
test reconstruction of tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
95
diff
changeset
|
3395 "SeriesDescription" : "world", |
|
272d1229cb49
test reconstruction of tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
95
diff
changeset
|
3396 "SOPClassUID" : "test", |
|
272d1229cb49
test reconstruction of tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
95
diff
changeset
|
3397 "SOPInstanceUID" : "myid", |
|
272d1229cb49
test reconstruction of tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
95
diff
changeset
|
3398 }, |
| 119 | 3399 "Keep" : [ "StudyInstanceUID", "SeriesInstanceUID" ], |
| 3400 "Force" : True | |
|
96
272d1229cb49
test reconstruction of tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
95
diff
changeset
|
3401 }) |
|
272d1229cb49
test reconstruction of tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
95
diff
changeset
|
3402 |
|
272d1229cb49
test reconstruction of tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
95
diff
changeset
|
3403 instances = DoGet(_REMOTE, '/instances/') |
|
272d1229cb49
test reconstruction of tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
95
diff
changeset
|
3404 self.assertEqual(1, len(DoGet(_REMOTE, '/patients/'))) |
|
272d1229cb49
test reconstruction of tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
95
diff
changeset
|
3405 self.assertEqual(1, len(DoGet(_REMOTE, '/studies/'))) |
|
272d1229cb49
test reconstruction of tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
95
diff
changeset
|
3406 self.assertEqual(1, len(DoGet(_REMOTE, '/series/'))) |
|
272d1229cb49
test reconstruction of tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
95
diff
changeset
|
3407 self.assertEqual(2, len(instances)) |
|
272d1229cb49
test reconstruction of tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
95
diff
changeset
|
3408 |
|
272d1229cb49
test reconstruction of tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
95
diff
changeset
|
3409 b = instances[0] if instances[1] == a else instances[1] |
|
272d1229cb49
test reconstruction of tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
95
diff
changeset
|
3410 |
|
272d1229cb49
test reconstruction of tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
95
diff
changeset
|
3411 CompareMainDicomTag('Knee (R)', a, 'study', 'StudyDescription') |
|
272d1229cb49
test reconstruction of tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
95
diff
changeset
|
3412 CompareMainDicomTag('AX. FSE PD', a, 'series', 'SeriesDescription') |
|
272d1229cb49
test reconstruction of tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
95
diff
changeset
|
3413 CompareMainDicomTag('1.2.840.113619.2.176.2025.1499492.7040.1171286242.109', a, '', 'SOPInstanceUID') |
|
272d1229cb49
test reconstruction of tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
95
diff
changeset
|
3414 CompareMainDicomTag('myid', b, '', 'SOPInstanceUID') |
|
272d1229cb49
test reconstruction of tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
95
diff
changeset
|
3415 self.assertEqual('1.2.840.10008.5.1.4.1.1.4', DoGet(_REMOTE, '/instances/%s/metadata/SopClassUid' % a).strip()) |
|
272d1229cb49
test reconstruction of tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
95
diff
changeset
|
3416 self.assertEqual('test', DoGet(_REMOTE, '/instances/%s/metadata/SopClassUid' % b).strip()) |
|
272d1229cb49
test reconstruction of tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
95
diff
changeset
|
3417 |
|
272d1229cb49
test reconstruction of tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
95
diff
changeset
|
3418 DoPost(_REMOTE, '/instances/%s/reconstruct' % b, {}) |
|
272d1229cb49
test reconstruction of tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
95
diff
changeset
|
3419 |
|
272d1229cb49
test reconstruction of tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
95
diff
changeset
|
3420 CompareMainDicomTag('hello', a, 'study', 'StudyDescription') |
|
272d1229cb49
test reconstruction of tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
95
diff
changeset
|
3421 CompareMainDicomTag('world', a, 'series', 'SeriesDescription') |
|
272d1229cb49
test reconstruction of tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
95
diff
changeset
|
3422 CompareMainDicomTag('1.2.840.113619.2.176.2025.1499492.7040.1171286242.109', a, '', 'SOPInstanceUID') |
| 102 | 3423 |
| 104 | 3424 def test_httpClient_lua(self): |
| 3425 with open(GetDatabasePath('Lua/HttpClient.lua'), 'r') as f: | |
| 102 | 3426 result = DoPost(_REMOTE, '/tools/execute-script', f.read(), 'application/lua') |
| 3427 | |
| 3428 self.assertIn('OK', result) | |
|
107
fddb35f7289d
test_bitbucket_issue_44
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
104
diff
changeset
|
3429 |
|
fddb35f7289d
test_bitbucket_issue_44
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
104
diff
changeset
|
3430 |
|
fddb35f7289d
test_bitbucket_issue_44
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parents:
104
diff
changeset
|
3431 def test_bitbucket_issue_44(self): |
| 319 | 3432 # https://bugs.orthanc-server.com/show_bug.cgi?id=44 |
|
107
fddb35f7289d
test_bitbucket_issue_44
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parents:
104
diff
changeset
|
3433 UploadInstance(_REMOTE, 'Issue44/Monochrome1.dcm') |
|
fddb35f7289d
test_bitbucket_issue_44
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
104
diff
changeset
|
3434 UploadInstance(_REMOTE, 'Issue44/Monochrome2.dcm') |
|
fddb35f7289d
test_bitbucket_issue_44
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parents:
104
diff
changeset
|
3435 |
|
fddb35f7289d
test_bitbucket_issue_44
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parents:
104
diff
changeset
|
3436 # dcmcjpeg +ua +eb Monochrome1.dcm Monochrome1-Jpeg.dcm |
|
fddb35f7289d
test_bitbucket_issue_44
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
104
diff
changeset
|
3437 UploadInstance(_REMOTE, 'Issue44/Monochrome1-Jpeg.dcm') |
|
fddb35f7289d
test_bitbucket_issue_44
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
104
diff
changeset
|
3438 |
|
fddb35f7289d
test_bitbucket_issue_44
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parents:
104
diff
changeset
|
3439 # dcmcjpeg +ua Monochrome1.dcm Monochrome1-JpegLS.dcm |
|
fddb35f7289d
test_bitbucket_issue_44
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104
diff
changeset
|
3440 UploadInstance(_REMOTE, 'Issue44/Monochrome1-JpegLS.dcm') |
|
fddb35f7289d
test_bitbucket_issue_44
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parents:
104
diff
changeset
|
3441 |
|
fddb35f7289d
test_bitbucket_issue_44
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
104
diff
changeset
|
3442 monochrome1 = 'bcdd600a-a6a9c522-5f0a6e84-8657c9f3-b76e59b7' |
|
fddb35f7289d
test_bitbucket_issue_44
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
104
diff
changeset
|
3443 monochrome1_jpeg = '9df82121-208a2da8-0038674a-3d7a773b-b7008cd2' |
|
fddb35f7289d
test_bitbucket_issue_44
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104
diff
changeset
|
3444 monochrome1_jpegls = '0486d1a2-9165573f-b1976b20-e927b016-6b8d67ab' |
|
fddb35f7289d
test_bitbucket_issue_44
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
104
diff
changeset
|
3445 monochrome2 = 'f00947b7-f61f7164-c93414d1-c6fbda6a-9e92ed20' |
|
fddb35f7289d
test_bitbucket_issue_44
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
104
diff
changeset
|
3446 |
|
fddb35f7289d
test_bitbucket_issue_44
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
104
diff
changeset
|
3447 for i in [ monochrome1, monochrome1_jpeg, monochrome1_jpegls ]: |
|
fddb35f7289d
test_bitbucket_issue_44
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
104
diff
changeset
|
3448 im = GetImage(_REMOTE, '/instances/%s/preview' % i) |
|
fddb35f7289d
test_bitbucket_issue_44
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
104
diff
changeset
|
3449 self.assertEqual("L", im.mode) |
|
fddb35f7289d
test_bitbucket_issue_44
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parents:
104
diff
changeset
|
3450 self.assertEqual(2010, im.size[0]) |
|
fddb35f7289d
test_bitbucket_issue_44
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
104
diff
changeset
|
3451 self.assertEqual(2446, im.size[1]) |
|
fddb35f7289d
test_bitbucket_issue_44
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
104
diff
changeset
|
3452 |
|
fddb35f7289d
test_bitbucket_issue_44
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
104
diff
changeset
|
3453 # This is the chest image, with MONOCHROME1. Raw background is |
|
fddb35f7289d
test_bitbucket_issue_44
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
104
diff
changeset
|
3454 # white (255), should be rendered as black (0) => invert |
|
fddb35f7289d
test_bitbucket_issue_44
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
104
diff
changeset
|
3455 if i == monochrome1_jpeg: |
|
fddb35f7289d
test_bitbucket_issue_44
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
104
diff
changeset
|
3456 # Add some tolerance because of JPEG destructive compression |
|
fddb35f7289d
test_bitbucket_issue_44
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
104
diff
changeset
|
3457 self.assertGreater(10, im.getpixel((0,0))) |
|
fddb35f7289d
test_bitbucket_issue_44
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
104
diff
changeset
|
3458 else: |
|
fddb35f7289d
test_bitbucket_issue_44
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
104
diff
changeset
|
3459 self.assertEqual(0, im.getpixel((0,0))) |
|
fddb35f7289d
test_bitbucket_issue_44
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
104
diff
changeset
|
3460 |
|
fddb35f7289d
test_bitbucket_issue_44
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
104
diff
changeset
|
3461 im = GetImage(_REMOTE, '/instances/%s/preview' % monochrome2) |
|
fddb35f7289d
test_bitbucket_issue_44
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
104
diff
changeset
|
3462 self.assertEqual("L", im.mode) |
|
fddb35f7289d
test_bitbucket_issue_44
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
104
diff
changeset
|
3463 self.assertEqual(1572, im.size[0]) |
|
fddb35f7289d
test_bitbucket_issue_44
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
104
diff
changeset
|
3464 self.assertEqual(2010, im.size[1]) |
|
fddb35f7289d
test_bitbucket_issue_44
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
104
diff
changeset
|
3465 |
|
fddb35f7289d
test_bitbucket_issue_44
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
104
diff
changeset
|
3466 # This is the key image, with MONOCHROME2. Raw background is |
|
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test_bitbucket_issue_44
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
104
diff
changeset
|
3467 # white (255), should be rendered as white (255) |
|
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test_bitbucket_issue_44
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
104
diff
changeset
|
3468 self.assertEqual(255, im.getpixel((0,0))) |
|
111
7005cdeeb704
test_bitbucket_issue_42
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
107
diff
changeset
|
3469 |
|
7005cdeeb704
test_bitbucket_issue_42
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
107
diff
changeset
|
3470 |
|
7005cdeeb704
test_bitbucket_issue_42
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
107
diff
changeset
|
3471 def test_bitbucket_issue_42(self): |
| 319 | 3472 # https://bugs.orthanc-server.com/show_bug.cgi?id=42 |
| 123 | 3473 # This test fails on DCMTK 3.6.0, but succeeds in DCMTK 3.6.1 snapshots and DCMTK 3.6.2 |
|
111
7005cdeeb704
test_bitbucket_issue_42
Sebastien Jodogne <s.jodogne@gmail.com>
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107
diff
changeset
|
3474 UploadInstance(_REMOTE, 'Issue42.dcm')['ID'] |
|
7005cdeeb704
test_bitbucket_issue_42
Sebastien Jodogne <s.jodogne@gmail.com>
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107
diff
changeset
|
3475 modified = DoPost(_REMOTE, |
|
7005cdeeb704
test_bitbucket_issue_42
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107
diff
changeset
|
3476 '/patients/da128605-e040d0c4-310615d2-3475da63-df2d1ef4/modify', |
| 119 | 3477 '{"Replace":{"PatientID":"Hello","PatientName":"Sample patient name"},"Force":true}', |
|
111
7005cdeeb704
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diff
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|
3478 'application/json') |
|
7005cdeeb704
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107
diff
changeset
|
3479 self.assertTrue('PatientID' in modified) |
|
113
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diff
changeset
|
3480 |
|
3e5934363e76
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112
diff
changeset
|
3481 |
|
3e5934363e76
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Sebastien Jodogne <s.jodogne@gmail.com>
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diff
changeset
|
3482 def test_rest_find_limit(self): |
|
3e5934363e76
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diff
changeset
|
3483 # Check the "Since" and "Limit" parameters in URI "/tools/find" |
| 319 | 3484 # Related to issue 53: https://bugs.orthanc-server.com/show_bug.cgi?id=53 |
|
111
7005cdeeb704
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changeset
|
3485 |
|
113
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diff
changeset
|
3486 # Upload 6 instances |
|
3e5934363e76
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diff
changeset
|
3487 brainix = [] |
|
3e5934363e76
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diff
changeset
|
3488 knee = [] |
|
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diff
changeset
|
3489 for i in range(2): |
|
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test_rest_find_limitµ
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112
diff
changeset
|
3490 brainix.append(UploadInstance(_REMOTE, 'Brainix/Flair/IM-0001-000%d.dcm' % (i + 1)) ['ID']) |
|
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test_rest_find_limitµ
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diff
changeset
|
3491 brainix.append(UploadInstance(_REMOTE, 'Brainix/Epi/IM-0001-000%d.dcm' % (i + 1)) ['ID']) |
|
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diff
changeset
|
3492 knee.append(UploadInstance(_REMOTE, 'Knee/T1/IM-0001-000%d.dcm' % (i + 1)) ['ID']) |
|
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changeset
|
3493 |
|
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diff
changeset
|
3494 # Check using BRAINIX |
|
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112
diff
changeset
|
3495 a = DoPost(_REMOTE, '/tools/find', { 'Level' : 'Instance', |
|
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diff
changeset
|
3496 'Query' : { 'PatientName' : 'B*' }, |
|
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diff
changeset
|
3497 'Limit' : 10 }) |
|
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112
diff
changeset
|
3498 self.assertEqual(4, len(a)) |
|
3e5934363e76
test_rest_find_limitµ
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
112
diff
changeset
|
3499 |
|
3e5934363e76
test_rest_find_limitµ
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
112
diff
changeset
|
3500 a = DoPost(_REMOTE, '/tools/find', { 'Level' : 'Instance', |
|
3e5934363e76
test_rest_find_limitµ
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
112
diff
changeset
|
3501 'Query' : { 'PatientName' : 'B*' }, |
|
3e5934363e76
test_rest_find_limitµ
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
112
diff
changeset
|
3502 'Limit' : 4 }) |
|
3e5934363e76
test_rest_find_limitµ
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
112
diff
changeset
|
3503 self.assertEqual(4, len(a)) |
|
3e5934363e76
test_rest_find_limitµ
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
112
diff
changeset
|
3504 |
|
3e5934363e76
test_rest_find_limitµ
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
112
diff
changeset
|
3505 a = DoPost(_REMOTE, '/tools/find', { 'Level' : 'Instance', |
|
3e5934363e76
test_rest_find_limitµ
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
112
diff
changeset
|
3506 'Query' : { 'PatientName' : 'B*' }, |
|
3e5934363e76
test_rest_find_limitµ
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
112
diff
changeset
|
3507 'Since' : 2, |
|
3e5934363e76
test_rest_find_limitµ
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
112
diff
changeset
|
3508 'Limit' : 4 }) |
|
3e5934363e76
test_rest_find_limitµ
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
112
diff
changeset
|
3509 self.assertEqual(2, len(a)) |
|
3e5934363e76
test_rest_find_limitµ
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
112
diff
changeset
|
3510 |
|
3e5934363e76
test_rest_find_limitµ
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
112
diff
changeset
|
3511 a = DoPost(_REMOTE, '/tools/find', { 'Level' : 'Instance', |
|
3e5934363e76
test_rest_find_limitµ
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
112
diff
changeset
|
3512 'Query' : { 'PatientName' : 'B*' }, |
|
3e5934363e76
test_rest_find_limitµ
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
112
diff
changeset
|
3513 'Limit' : 3 }) |
|
3e5934363e76
test_rest_find_limitµ
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
112
diff
changeset
|
3514 self.assertEqual(3, len(a)) |
|
3e5934363e76
test_rest_find_limitµ
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
112
diff
changeset
|
3515 |
|
3e5934363e76
test_rest_find_limitµ
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
112
diff
changeset
|
3516 b = [] |
|
3e5934363e76
test_rest_find_limitµ
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
112
diff
changeset
|
3517 for i in range(4): |
|
3e5934363e76
test_rest_find_limitµ
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
112
diff
changeset
|
3518 a = DoPost(_REMOTE, '/tools/find', { 'Level' : 'Instance', |
|
3e5934363e76
test_rest_find_limitµ
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
112
diff
changeset
|
3519 'Query' : { 'PatientName' : 'B*' }, |
|
3e5934363e76
test_rest_find_limitµ
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
112
diff
changeset
|
3520 'Limit' : 1, |
|
3e5934363e76
test_rest_find_limitµ
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
112
diff
changeset
|
3521 'Since' : i }) |
|
3e5934363e76
test_rest_find_limitµ
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
112
diff
changeset
|
3522 self.assertEqual(1, len(a)) |
|
3e5934363e76
test_rest_find_limitµ
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
112
diff
changeset
|
3523 b.append(a[0]) |
|
3e5934363e76
test_rest_find_limitµ
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
112
diff
changeset
|
3524 |
|
3e5934363e76
test_rest_find_limitµ
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
112
diff
changeset
|
3525 # Check whether the two sets are equal through symmetric difference |
|
3e5934363e76
test_rest_find_limitµ
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
112
diff
changeset
|
3526 self.assertEqual(0, len(set(b) ^ set(brainix))) |
|
3e5934363e76
test_rest_find_limitµ
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
112
diff
changeset
|
3527 |
|
3e5934363e76
test_rest_find_limitµ
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
112
diff
changeset
|
3528 # Check using KNEE |
|
3e5934363e76
test_rest_find_limitµ
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
112
diff
changeset
|
3529 a = DoPost(_REMOTE, '/tools/find', { 'Level' : 'Instance', |
|
3e5934363e76
test_rest_find_limitµ
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
112
diff
changeset
|
3530 'Query' : { 'PatientName' : 'K*' }, |
|
3e5934363e76
test_rest_find_limitµ
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
112
diff
changeset
|
3531 'Limit' : 10 }) |
|
3e5934363e76
test_rest_find_limitµ
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
112
diff
changeset
|
3532 self.assertEqual(2, len(a)) |
|
3e5934363e76
test_rest_find_limitµ
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
112
diff
changeset
|
3533 |
|
3e5934363e76
test_rest_find_limitµ
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
112
diff
changeset
|
3534 a = DoPost(_REMOTE, '/tools/find', { 'Level' : 'Instance', |
|
3e5934363e76
test_rest_find_limitµ
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
112
diff
changeset
|
3535 'Query' : { 'PatientName' : 'K*' }, |
|
3e5934363e76
test_rest_find_limitµ
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
112
diff
changeset
|
3536 'Limit' : 2 }) |
|
3e5934363e76
test_rest_find_limitµ
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
112
diff
changeset
|
3537 self.assertEqual(2, len(a)) |
|
3e5934363e76
test_rest_find_limitµ
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
112
diff
changeset
|
3538 |
|
3e5934363e76
test_rest_find_limitµ
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
112
diff
changeset
|
3539 b = [] |
|
3e5934363e76
test_rest_find_limitµ
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
112
diff
changeset
|
3540 for i in range(2): |
|
3e5934363e76
test_rest_find_limitµ
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
112
diff
changeset
|
3541 a = DoPost(_REMOTE, '/tools/find', { 'Level' : 'Instance', |
|
3e5934363e76
test_rest_find_limitµ
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
112
diff
changeset
|
3542 'Query' : { 'PatientName' : 'K*' }, |
|
3e5934363e76
test_rest_find_limitµ
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
112
diff
changeset
|
3543 'Limit' : 1, |
|
3e5934363e76
test_rest_find_limitµ
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
112
diff
changeset
|
3544 'Since' : i }) |
|
3e5934363e76
test_rest_find_limitµ
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
112
diff
changeset
|
3545 self.assertEqual(1, len(a)) |
|
3e5934363e76
test_rest_find_limitµ
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
112
diff
changeset
|
3546 b.append(a[0]) |
|
3e5934363e76
test_rest_find_limitµ
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
112
diff
changeset
|
3547 |
|
3e5934363e76
test_rest_find_limitµ
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
112
diff
changeset
|
3548 self.assertEqual(0, len(set(b) ^ set(knee))) |
|
115
45ebfab035b7
test_bitbucket_issue_46
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
113
diff
changeset
|
3549 |
|
45ebfab035b7
test_bitbucket_issue_46
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
113
diff
changeset
|
3550 |
|
45ebfab035b7
test_bitbucket_issue_46
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
113
diff
changeset
|
3551 def test_bitbucket_issue_46(self): |
|
45ebfab035b7
test_bitbucket_issue_46
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
113
diff
changeset
|
3552 # "PHI remaining after anonymization" |
| 319 | 3553 # https://bugs.orthanc-server.com/show_bug.cgi?id=46 |
|
115
45ebfab035b7
test_bitbucket_issue_46
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
113
diff
changeset
|
3554 |
|
45ebfab035b7
test_bitbucket_issue_46
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
113
diff
changeset
|
3555 def GetAnonymizedTags(study, version): |
|
45ebfab035b7
test_bitbucket_issue_46
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
113
diff
changeset
|
3556 anonymized = DoPost(_REMOTE, '/studies/%s/anonymize' % study, |
|
45ebfab035b7
test_bitbucket_issue_46
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
113
diff
changeset
|
3557 { 'DicomVersion' : version }, |
|
45ebfab035b7
test_bitbucket_issue_46
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
113
diff
changeset
|
3558 'application/json') ['ID'] |
|
45ebfab035b7
test_bitbucket_issue_46
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
113
diff
changeset
|
3559 a = DoGet(_REMOTE, '/studies/%s/instances' % anonymized) |
|
45ebfab035b7
test_bitbucket_issue_46
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
113
diff
changeset
|
3560 self.assertEqual(1, len(a)) |
|
45ebfab035b7
test_bitbucket_issue_46
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
113
diff
changeset
|
3561 |
|
45ebfab035b7
test_bitbucket_issue_46
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
113
diff
changeset
|
3562 instance = a[0]['ID'] |
|
45ebfab035b7
test_bitbucket_issue_46
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
113
diff
changeset
|
3563 |
|
45ebfab035b7
test_bitbucket_issue_46
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
113
diff
changeset
|
3564 return (instance, DoGet(_REMOTE, '/instances/%s/tags' % instance)) |
|
45ebfab035b7
test_bitbucket_issue_46
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
113
diff
changeset
|
3565 |
|
45ebfab035b7
test_bitbucket_issue_46
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
113
diff
changeset
|
3566 UploadInstance(_REMOTE, 'Issue44/Monochrome1.dcm') |
|
45ebfab035b7
test_bitbucket_issue_46
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
113
diff
changeset
|
3567 origStudy = '6068a14b-d4df27af-9ec22145-538772d8-74f228ff' |
|
45ebfab035b7
test_bitbucket_issue_46
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
113
diff
changeset
|
3568 |
|
45ebfab035b7
test_bitbucket_issue_46
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
113
diff
changeset
|
3569 # Add the 0032,1033 (Requesting Service) and the 0010,1060 |
|
45ebfab035b7
test_bitbucket_issue_46
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
113
diff
changeset
|
3570 # (Patient's Mother's Birth Name) tags |
|
45ebfab035b7
test_bitbucket_issue_46
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
113
diff
changeset
|
3571 newStudy = DoPost(_REMOTE, '/studies/%s/modify' % origStudy, |
|
45ebfab035b7
test_bitbucket_issue_46
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
113
diff
changeset
|
3572 '{"Replace":{"0010,1060":"OSIMIS","0032,1033":"MOTHER"}}', |
|
45ebfab035b7
test_bitbucket_issue_46
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
113
diff
changeset
|
3573 'application/json')['ID'] |
|
45ebfab035b7
test_bitbucket_issue_46
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
113
diff
changeset
|
3574 |
|
45ebfab035b7
test_bitbucket_issue_46
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
113
diff
changeset
|
3575 # Use Table E.1-1 from PS 3.15-2008 |
|
45ebfab035b7
test_bitbucket_issue_46
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
113
diff
changeset
|
3576 # https://raw.githubusercontent.com/jodogne/dicom-specification/master/2008/08_15pu.pdf |
|
45ebfab035b7
test_bitbucket_issue_46
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
113
diff
changeset
|
3577 (instance, tags) = GetAnonymizedTags(newStudy, "2008") |
|
45ebfab035b7
test_bitbucket_issue_46
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
113
diff
changeset
|
3578 self.assertTrue('0032,1033' in tags) |
|
45ebfab035b7
test_bitbucket_issue_46
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
113
diff
changeset
|
3579 self.assertTrue('0010,1060' in tags) |
|
45ebfab035b7
test_bitbucket_issue_46
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
113
diff
changeset
|
3580 |
|
45ebfab035b7
test_bitbucket_issue_46
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
113
diff
changeset
|
3581 # Use Table E.1-1 from PS 3.15-2011 (only if Orthanc >= 1.2.1) |
|
45ebfab035b7
test_bitbucket_issue_46
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parents:
113
diff
changeset
|
3582 # https://raw.githubusercontent.com/jodogne/dicom-specification/master/2008/08_15pu.pdf |
|
45ebfab035b7
test_bitbucket_issue_46
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
113
diff
changeset
|
3583 (instance, tags) = GetAnonymizedTags(newStudy, "2017c") |
|
45ebfab035b7
test_bitbucket_issue_46
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
113
diff
changeset
|
3584 self.assertFalse('0032,1033' in tags) |
|
45ebfab035b7
test_bitbucket_issue_46
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
113
diff
changeset
|
3585 self.assertFalse('0010,1060' in tags) |
|
45ebfab035b7
test_bitbucket_issue_46
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
113
diff
changeset
|
3586 |
|
45ebfab035b7
test_bitbucket_issue_46
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
113
diff
changeset
|
3587 t = {} |
|
45ebfab035b7
test_bitbucket_issue_46
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
113
diff
changeset
|
3588 for (key, value) in tags.iteritems(): |
|
45ebfab035b7
test_bitbucket_issue_46
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parents:
113
diff
changeset
|
3589 t[value['Name']] = value['Value'] |
|
45ebfab035b7
test_bitbucket_issue_46
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
113
diff
changeset
|
3590 |
|
45ebfab035b7
test_bitbucket_issue_46
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
113
diff
changeset
|
3591 self.assertEqual('', t['StudyDate']) # Type 1 tag => cleared |
|
45ebfab035b7
test_bitbucket_issue_46
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parents:
113
diff
changeset
|
3592 self.assertEqual('', t['StudyTime']) # Type 1 tag => cleared |
|
45ebfab035b7
test_bitbucket_issue_46
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
113
diff
changeset
|
3593 self.assertEqual('', t['PatientSex']) # Type 1 tag => cleared |
|
45ebfab035b7
test_bitbucket_issue_46
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
113
diff
changeset
|
3594 self.assertFalse('SeriesDate' in t) # Type 3 tag => null |
|
45ebfab035b7
test_bitbucket_issue_46
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
113
diff
changeset
|
3595 self.assertFalse('SeriesTime' in t) # Type 3 tag => null |
|
45ebfab035b7
test_bitbucket_issue_46
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
113
diff
changeset
|
3596 |
|
45ebfab035b7
test_bitbucket_issue_46
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
113
diff
changeset
|
3597 with tempfile.NamedTemporaryFile(delete = True) as f: |
|
45ebfab035b7
test_bitbucket_issue_46
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parents:
113
diff
changeset
|
3598 # Run "dciodvfy" on the anonymized file to be sure it is still valid |
|
45ebfab035b7
test_bitbucket_issue_46
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113
diff
changeset
|
3599 f.write(DoGet(_REMOTE, '/instances/%s/file' % instance)) |
|
45ebfab035b7
test_bitbucket_issue_46
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
113
diff
changeset
|
3600 f.flush() |
|
45ebfab035b7
test_bitbucket_issue_46
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
113
diff
changeset
|
3601 subprocess.check_output([ FindExecutable('dciodvfy'), f.name ], |
|
45ebfab035b7
test_bitbucket_issue_46
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
113
diff
changeset
|
3602 stderr = subprocess.STDOUT).split('\n') |
|
118
a954c535fef6
test_bitbucket_issue_55
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
117
diff
changeset
|
3603 |
|
a954c535fef6
test_bitbucket_issue_55
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
117
diff
changeset
|
3604 |
|
a954c535fef6
test_bitbucket_issue_55
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
117
diff
changeset
|
3605 def test_bitbucket_issue_55(self): |
|
a954c535fef6
test_bitbucket_issue_55
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
117
diff
changeset
|
3606 def Run(modify, query): |
|
a954c535fef6
test_bitbucket_issue_55
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parents:
117
diff
changeset
|
3607 self.assertEqual(1, len(DoGet(_REMOTE, '/instances'))) |
|
a954c535fef6
test_bitbucket_issue_55
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
117
diff
changeset
|
3608 |
|
a954c535fef6
test_bitbucket_issue_55
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
117
diff
changeset
|
3609 operation = 'modify' if modify else 'anonymize' |
|
a954c535fef6
test_bitbucket_issue_55
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
117
diff
changeset
|
3610 |
|
a954c535fef6
test_bitbucket_issue_55
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
117
diff
changeset
|
3611 self.assertRaises(Exception, lambda: DoPost( |
|
a954c535fef6
test_bitbucket_issue_55
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
117
diff
changeset
|
3612 _REMOTE, '/studies/%s/%s' % (study, operation), query)) |
|
a954c535fef6
test_bitbucket_issue_55
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
117
diff
changeset
|
3613 self.assertEqual(1, len(DoGet(_REMOTE, '/instances'))) |
|
a954c535fef6
test_bitbucket_issue_55
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
117
diff
changeset
|
3614 |
|
a954c535fef6
test_bitbucket_issue_55
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
117
diff
changeset
|
3615 query["Force"] = True |
|
a954c535fef6
test_bitbucket_issue_55
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
117
diff
changeset
|
3616 a = DoPost(_REMOTE, '/studies/%s/%s' % (study, operation), query)['Path'] |
|
a954c535fef6
test_bitbucket_issue_55
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
117
diff
changeset
|
3617 self.assertEqual(2, len(DoGet(_REMOTE, '/instances'))) |
|
a954c535fef6
test_bitbucket_issue_55
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
117
diff
changeset
|
3618 DoDelete(_REMOTE, a) |
|
a954c535fef6
test_bitbucket_issue_55
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
117
diff
changeset
|
3619 |
|
a954c535fef6
test_bitbucket_issue_55
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
117
diff
changeset
|
3620 self.assertEqual(1, len(DoGet(_REMOTE, '/instances'))) |
|
a954c535fef6
test_bitbucket_issue_55
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
117
diff
changeset
|
3621 |
|
a954c535fef6
test_bitbucket_issue_55
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
117
diff
changeset
|
3622 UploadInstance(_REMOTE, 'DummyCT.dcm') |
|
a954c535fef6
test_bitbucket_issue_55
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
117
diff
changeset
|
3623 study = 'b9c08539-26f93bde-c81ab0d7-bffaf2cb-a4d0bdd0' |
|
a954c535fef6
test_bitbucket_issue_55
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
117
diff
changeset
|
3624 |
|
a954c535fef6
test_bitbucket_issue_55
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
117
diff
changeset
|
3625 Run(True, { "Replace" : { "StudyInstanceUID" : "world" } }) |
|
a954c535fef6
test_bitbucket_issue_55
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
117
diff
changeset
|
3626 Run(True, { "Replace" : { "SeriesInstanceUID" : "world" } }) |
|
a954c535fef6
test_bitbucket_issue_55
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
117
diff
changeset
|
3627 Run(True, { "Replace" : { "SOPInstanceUID" : "world" } }) |
|
a954c535fef6
test_bitbucket_issue_55
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
117
diff
changeset
|
3628 |
|
a954c535fef6
test_bitbucket_issue_55
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
117
diff
changeset
|
3629 Run(False, { "Keep" : [ "StudyInstanceUID" ]}) |
|
a954c535fef6
test_bitbucket_issue_55
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
117
diff
changeset
|
3630 Run(False, { "Keep" : [ "SeriesInstanceUID" ]}) |
|
a954c535fef6
test_bitbucket_issue_55
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
117
diff
changeset
|
3631 Run(False, { "Keep" : [ "SOPInstanceUID" ]}) |
|
a954c535fef6
test_bitbucket_issue_55
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
117
diff
changeset
|
3632 |
|
a954c535fef6
test_bitbucket_issue_55
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
117
diff
changeset
|
3633 Run(False, { "Replace" : { "StudyInstanceUID" : "world" } }) |
|
a954c535fef6
test_bitbucket_issue_55
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
117
diff
changeset
|
3634 Run(False, { "Replace" : { "SeriesInstanceUID" : "world" } }) |
|
a954c535fef6
test_bitbucket_issue_55
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
117
diff
changeset
|
3635 Run(False, { "Replace" : { "SOPInstanceUID" : "world" } }) |
|
a954c535fef6
test_bitbucket_issue_55
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
117
diff
changeset
|
3636 |
|
120
fce08afe6b2d
test_bitbucket_issue_56
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
119
diff
changeset
|
3637 |
|
fce08afe6b2d
test_bitbucket_issue_56
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
119
diff
changeset
|
3638 def test_bitbucket_issue_56(self): |
|
fce08afe6b2d
test_bitbucket_issue_56
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
119
diff
changeset
|
3639 # Case-insensitive matching over accents. This test assumes |
|
fce08afe6b2d
test_bitbucket_issue_56
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
119
diff
changeset
|
3640 # that the "CaseSensitivePN" configuration option of Orthanc |
|
fce08afe6b2d
test_bitbucket_issue_56
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
119
diff
changeset
|
3641 # is set to "false" (default value). |
| 319 | 3642 # https://bugs.orthanc-server.com/show_bug.cgi?id=56 |
|
120
fce08afe6b2d
test_bitbucket_issue_56
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
119
diff
changeset
|
3643 |
|
fce08afe6b2d
test_bitbucket_issue_56
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
119
diff
changeset
|
3644 def Check(name, expected, expectedSensitive): |
|
fce08afe6b2d
test_bitbucket_issue_56
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
119
diff
changeset
|
3645 a = CallFindScu([ '-k', '0008,0005=ISO_IR 192', # Use UTF-8 |
|
fce08afe6b2d
test_bitbucket_issue_56
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
119
diff
changeset
|
3646 '-k', '0008,0052=PATIENT', |
|
fce08afe6b2d
test_bitbucket_issue_56
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
119
diff
changeset
|
3647 '-k', 'PatientName=%s' % name ]) |
|
fce08afe6b2d
test_bitbucket_issue_56
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
119
diff
changeset
|
3648 patientNames = re.findall('\(0010,0010\).*?\[(.*?)\]', a) |
|
fce08afe6b2d
test_bitbucket_issue_56
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
119
diff
changeset
|
3649 self.assertEqual(expected, len(patientNames)) |
|
fce08afe6b2d
test_bitbucket_issue_56
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
119
diff
changeset
|
3650 |
|
fce08afe6b2d
test_bitbucket_issue_56
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
119
diff
changeset
|
3651 a = DoPost(_REMOTE, '/tools/find', { 'Level' : 'Patient', |
|
fce08afe6b2d
test_bitbucket_issue_56
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
119
diff
changeset
|
3652 'CaseSensitive' : False, |
|
fce08afe6b2d
test_bitbucket_issue_56
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
119
diff
changeset
|
3653 'Query' : { 'PatientName' : name }}) |
|
fce08afe6b2d
test_bitbucket_issue_56
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
119
diff
changeset
|
3654 self.assertEqual(expected, len(a)) |
|
fce08afe6b2d
test_bitbucket_issue_56
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
119
diff
changeset
|
3655 |
|
fce08afe6b2d
test_bitbucket_issue_56
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
119
diff
changeset
|
3656 a = DoPost(_REMOTE, '/tools/find', { 'Level' : 'Patient', |
|
fce08afe6b2d
test_bitbucket_issue_56
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
119
diff
changeset
|
3657 'CaseSensitive' : True, |
|
fce08afe6b2d
test_bitbucket_issue_56
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
119
diff
changeset
|
3658 'Query' : { 'PatientName' : name }}) |
|
fce08afe6b2d
test_bitbucket_issue_56
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
119
diff
changeset
|
3659 self.assertEqual(expectedSensitive, len(a)) |
|
fce08afe6b2d
test_bitbucket_issue_56
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
119
diff
changeset
|
3660 |
|
fce08afe6b2d
test_bitbucket_issue_56
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
119
diff
changeset
|
3661 UploadInstance(_REMOTE, 'Encodings/Lena-latin1.dcm') |
|
fce08afe6b2d
test_bitbucket_issue_56
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
119
diff
changeset
|
3662 |
|
fce08afe6b2d
test_bitbucket_issue_56
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
119
diff
changeset
|
3663 # WildcardConstraint |
|
fce08afe6b2d
test_bitbucket_issue_56
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
119
diff
changeset
|
3664 Check('TeSt*', 1, 0) |
|
fce08afe6b2d
test_bitbucket_issue_56
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
119
diff
changeset
|
3665 Check('TeSt-a*', 0, 0) |
|
fce08afe6b2d
test_bitbucket_issue_56
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
119
diff
changeset
|
3666 Check('TeSt-É*', 1, 0) |
|
fce08afe6b2d
test_bitbucket_issue_56
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
119
diff
changeset
|
3667 Check('TeSt-é*', 1, 0) |
|
fce08afe6b2d
test_bitbucket_issue_56
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
119
diff
changeset
|
3668 Check('Test-é*', 1, 1) |
|
fce08afe6b2d
test_bitbucket_issue_56
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
119
diff
changeset
|
3669 |
|
fce08afe6b2d
test_bitbucket_issue_56
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
119
diff
changeset
|
3670 # ListConstraint |
|
fce08afe6b2d
test_bitbucket_issue_56
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
119
diff
changeset
|
3671 Check('Test-éüäöò\\nope', 1, 1) |
|
fce08afe6b2d
test_bitbucket_issue_56
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
119
diff
changeset
|
3672 Check('Test-ÉÜÄÖÒ\\nope', 1, 0) |
|
fce08afe6b2d
test_bitbucket_issue_56
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
119
diff
changeset
|
3673 |
|
fce08afe6b2d
test_bitbucket_issue_56
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
119
diff
changeset
|
3674 # ValueConstraint |
|
fce08afe6b2d
test_bitbucket_issue_56
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
119
diff
changeset
|
3675 Check('Test-éüäöò', 1, 1) |
|
fce08afe6b2d
test_bitbucket_issue_56
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
119
diff
changeset
|
3676 Check('Test-ÉÜÄÖÒ', 1, 0) |
|
fce08afe6b2d
test_bitbucket_issue_56
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
119
diff
changeset
|
3677 |
| 125 | 3678 |
| 3679 def test_gbk_alias(self): | |
| 3680 # https://groups.google.com/d/msg/orthanc-users/WMM8LMbjpUc/02-1f_yFCgAJ | |
| 3681 # This test fails on Orthanc <= 1.3.0 | |
| 3682 i = UploadInstance(_REMOTE, '2017-09-19-GBK-Tumashu.dcm')['ID'] | |
| 3683 tags = DoGet(_REMOTE, '/instances/%s/tags?simplify' % i) | |
| 3684 self.assertEqual(tags['PatientName'], u'徐浩凯') | |
| 3685 self.assertEqual(tags['InstitutionName'], u'灌云县疾病预防控制中心') | |
| 126 | 3686 |
| 3687 | |
| 3688 def test_long_tag(self): | |
| 3689 i = UploadInstance(_REMOTE, 'DummyCTWithLongTag.dcm')['ID'] | |
| 3690 series = 'f2635388-f01d497a-15f7c06b-ad7dba06-c4c599fe' | |
| 3691 | |
| 3692 tags = DoGet(_REMOTE, '/instances/%s/tags' % i) | |
| 3693 self.assertTrue('0018,1020' in tags) | |
| 3694 self.assertEqual('SoftwareVersions', tags['0018,1020']['Name']) | |
| 3695 self.assertEqual('TooLong', tags['0018,1020']['Type']) | |
| 3696 self.assertEqual(None, tags['0018,1020']['Value']) | |
| 3697 | |
| 3698 tags = DoGet(_REMOTE, '/instances/%s/tags?ignore-length=0018-1020' % i) | |
| 3699 self.assertTrue('0018,1020' in tags) | |
| 3700 self.assertEqual('SoftwareVersions', tags['0018,1020']['Name']) | |
| 3701 self.assertEqual('String', tags['0018,1020']['Type']) | |
| 3702 self.assertTrue(tags['0018,1020']['Value'].startswith('Lorem ipsum dolor sit amet')) | |
| 3703 | |
| 3704 tags = DoGet(_REMOTE, '/instances/%s/tags?simplify' % i) | |
| 3705 self.assertTrue('SoftwareVersions' in tags) | |
| 3706 self.assertEqual(None, tags['SoftwareVersions']) | |
| 3707 self.assertTrue('HeartRate' in tags) | |
| 3708 self.assertEqual(474, int(tags['HeartRate'])) | |
| 3709 | |
| 3710 tags = DoGet(_REMOTE, '/instances/%s/simplified-tags' % i) | |
| 3711 self.assertTrue('SoftwareVersions' in tags) | |
| 3712 self.assertEqual(None, tags['SoftwareVersions']) | |
| 3713 | |
| 3714 tags = DoGet(_REMOTE, '/instances/%s/tags?simplify&ignore-length=0018-1020' % i) | |
| 3715 self.assertTrue('SoftwareVersions' in tags) | |
| 3716 self.assertTrue(tags['SoftwareVersions'].startswith('Lorem ipsum dolor sit amet')) | |
| 3717 | |
| 3718 tags = DoGet(_REMOTE, '/instances/%s/tags?simplify&ignore-length=SoftwareVersions' % i) | |
| 3719 self.assertTrue('SoftwareVersions' in tags) | |
| 3720 self.assertTrue(tags['SoftwareVersions'].startswith('Lorem ipsum dolor sit amet')) | |
| 3721 | |
| 3722 tags = DoGet(_REMOTE, '/series/%s/instances-tags' % series) | |
| 3723 self.assertEqual(1, len(tags)) | |
| 3724 self.assertTrue(i in tags.keys()) | |
| 3725 self.assertTrue('0018,1020' in tags[i]) | |
| 3726 self.assertEqual('TooLong', tags[i]['0018,1020']['Type']) | |
| 3727 | |
| 3728 tags = DoGet(_REMOTE, '/series/%s/instances-tags?ignore-length=SoftwareVersions' % series) | |
| 3729 self.assertEqual(1, len(tags)) | |
| 3730 self.assertTrue(i in tags.keys()) | |
| 3731 self.assertTrue('0018,1020' in tags[i]) | |
| 3732 self.assertEqual('String', tags[i]['0018,1020']['Type']) | |
| 3733 self.assertTrue(tags[i]['0018,1020']['Value'].startswith('Lorem ipsum dolor sit amet')) | |
| 3734 | |
|
127
1eea4d3a1ba9
test_extended_media
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
126
diff
changeset
|
3735 |
|
1eea4d3a1ba9
test_extended_media
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
126
diff
changeset
|
3736 def test_extended_media(self): |
|
1eea4d3a1ba9
test_extended_media
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
126
diff
changeset
|
3737 UploadInstance(_REMOTE, 'Knee/T1/IM-0001-0001.dcm') |
|
1eea4d3a1ba9
test_extended_media
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
126
diff
changeset
|
3738 |
|
1eea4d3a1ba9
test_extended_media
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
126
diff
changeset
|
3739 z = GetArchive(_REMOTE, '/patients/%s/media?extended' % DoGet(_REMOTE, '/patients')[0]) |
|
1eea4d3a1ba9
test_extended_media
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
126
diff
changeset
|
3740 self.assertEqual(2, len(z.namelist())) |
|
1eea4d3a1ba9
test_extended_media
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
126
diff
changeset
|
3741 self.assertTrue('IMAGES/IM0' in z.namelist()) |
|
1eea4d3a1ba9
test_extended_media
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
126
diff
changeset
|
3742 self.assertTrue('DICOMDIR' in z.namelist()) |
|
1eea4d3a1ba9
test_extended_media
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
126
diff
changeset
|
3743 |
|
1eea4d3a1ba9
test_extended_media
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
126
diff
changeset
|
3744 try: |
|
1eea4d3a1ba9
test_extended_media
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
126
diff
changeset
|
3745 os.remove('/tmp/DICOMDIR') |
|
1eea4d3a1ba9
test_extended_media
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
126
diff
changeset
|
3746 except: |
|
1eea4d3a1ba9
test_extended_media
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
126
diff
changeset
|
3747 # The file does not exist |
|
1eea4d3a1ba9
test_extended_media
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
126
diff
changeset
|
3748 pass |
|
1eea4d3a1ba9
test_extended_media
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
126
diff
changeset
|
3749 |
|
1eea4d3a1ba9
test_extended_media
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
126
diff
changeset
|
3750 z.extract('DICOMDIR', '/tmp') |
|
1eea4d3a1ba9
test_extended_media
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
126
diff
changeset
|
3751 a = subprocess.check_output([ FindExecutable('dciodvfy'), '/tmp/DICOMDIR' ], |
|
1eea4d3a1ba9
test_extended_media
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
126
diff
changeset
|
3752 stderr = subprocess.STDOUT).split('\n') |
|
1eea4d3a1ba9
test_extended_media
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
126
diff
changeset
|
3753 self.assertEqual(5, len(a)) |
|
1eea4d3a1ba9
test_extended_media
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
126
diff
changeset
|
3754 self.assertTrue(a[0].startswith('Warning')) |
|
1eea4d3a1ba9
test_extended_media
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
126
diff
changeset
|
3755 self.assertEqual('BasicDirectory', a[1]) |
|
1eea4d3a1ba9
test_extended_media
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
126
diff
changeset
|
3756 self.assertTrue('not present in standard DICOM IOD' in a[2]) |
|
1eea4d3a1ba9
test_extended_media
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
126
diff
changeset
|
3757 self.assertTrue('not present in standard DICOM IOD' in a[3]) |
|
1eea4d3a1ba9
test_extended_media
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
126
diff
changeset
|
3758 self.assertEqual('', a[4]) |
|
1eea4d3a1ba9
test_extended_media
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
126
diff
changeset
|
3759 |
|
1eea4d3a1ba9
test_extended_media
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
126
diff
changeset
|
3760 a = subprocess.check_output([ FindExecutable('dcentvfy'), '/tmp/DICOMDIR' ], |
|
1eea4d3a1ba9
test_extended_media
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
126
diff
changeset
|
3761 stderr = subprocess.STDOUT).split('\n') |
|
1eea4d3a1ba9
test_extended_media
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
126
diff
changeset
|
3762 self.assertEqual(1, len(a)) |
|
1eea4d3a1ba9
test_extended_media
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
126
diff
changeset
|
3763 self.assertEqual('', a[0]) |
|
1eea4d3a1ba9
test_extended_media
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
126
diff
changeset
|
3764 |
|
1eea4d3a1ba9
test_extended_media
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
126
diff
changeset
|
3765 a = subprocess.check_output([ FindExecutable('dcm2xml'), '/tmp/DICOMDIR' ]) |
|
1eea4d3a1ba9
test_extended_media
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
126
diff
changeset
|
3766 self.assertTrue(re.search('1.3.46.670589.11.17521.5.0.3124.2008081908590448738', a) != None) |
|
1eea4d3a1ba9
test_extended_media
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
126
diff
changeset
|
3767 |
|
1eea4d3a1ba9
test_extended_media
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
126
diff
changeset
|
3768 # Check the presence of the series description (extended tag) |
|
1eea4d3a1ba9
test_extended_media
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
126
diff
changeset
|
3769 self.assertTrue(re.search('T1W_aTSE', a) != None) |
|
1eea4d3a1ba9
test_extended_media
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
126
diff
changeset
|
3770 |
|
1eea4d3a1ba9
test_extended_media
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
126
diff
changeset
|
3771 os.remove('/tmp/DICOMDIR') |
|
1eea4d3a1ba9
test_extended_media
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
126
diff
changeset
|
3772 |
|
1eea4d3a1ba9
test_extended_media
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
126
diff
changeset
|
3773 |
|
132
149144d854bb
Orthanc.test_anonymize_relationships_1/2
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
130
diff
changeset
|
3774 def test_anonymize_relationships_1(self): |
|
133
f0d4c4707e64
test_anonymize_relationships_3
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
132
diff
changeset
|
3775 UploadInstance(_REMOTE, 'Knee/T1/IM-0001-0001.dcm') |
|
f0d4c4707e64
test_anonymize_relationships_3
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
132
diff
changeset
|
3776 UploadInstance(_REMOTE, 'Knee/T1/IM-0001-0002.dcm') |
|
132
149144d854bb
Orthanc.test_anonymize_relationships_1/2
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
130
diff
changeset
|
3777 study = '0a9b3153-2512774b-2d9580de-1fc3dcf6-3bd83918' |
|
149144d854bb
Orthanc.test_anonymize_relationships_1/2
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
130
diff
changeset
|
3778 |
|
149144d854bb
Orthanc.test_anonymize_relationships_1/2
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
130
diff
changeset
|
3779 anonymized = DoPost(_REMOTE, '/studies/%s/anonymize' % study, |
|
149144d854bb
Orthanc.test_anonymize_relationships_1/2
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
130
diff
changeset
|
3780 '{}', |
|
149144d854bb
Orthanc.test_anonymize_relationships_1/2
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
130
diff
changeset
|
3781 'application/json')['ID'] |
|
149144d854bb
Orthanc.test_anonymize_relationships_1/2
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
130
diff
changeset
|
3782 |
|
149144d854bb
Orthanc.test_anonymize_relationships_1/2
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
130
diff
changeset
|
3783 a = DoGet(_REMOTE, '/studies/%s/instances' % study) |
|
149144d854bb
Orthanc.test_anonymize_relationships_1/2
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
130
diff
changeset
|
3784 self.assertEqual(2, len(a)) |
|
149144d854bb
Orthanc.test_anonymize_relationships_1/2
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
130
diff
changeset
|
3785 a1 = a[0]['ID'] |
|
149144d854bb
Orthanc.test_anonymize_relationships_1/2
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
130
diff
changeset
|
3786 a2 = a[1]['ID'] |
|
149144d854bb
Orthanc.test_anonymize_relationships_1/2
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
130
diff
changeset
|
3787 |
|
149144d854bb
Orthanc.test_anonymize_relationships_1/2
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
130
diff
changeset
|
3788 b = DoGet(_REMOTE, '/studies/%s/instances' % anonymized) |
|
149144d854bb
Orthanc.test_anonymize_relationships_1/2
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
130
diff
changeset
|
3789 self.assertEqual(2, len(b)) |
|
149144d854bb
Orthanc.test_anonymize_relationships_1/2
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
130
diff
changeset
|
3790 b1 = b[0]['ID'] |
|
149144d854bb
Orthanc.test_anonymize_relationships_1/2
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
130
diff
changeset
|
3791 b2 = b[1]['ID'] |
|
149144d854bb
Orthanc.test_anonymize_relationships_1/2
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
130
diff
changeset
|
3792 |
|
149144d854bb
Orthanc.test_anonymize_relationships_1/2
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
130
diff
changeset
|
3793 SEQUENCE = '/instances/%s/content/ReferencedImageSequence' |
|
149144d854bb
Orthanc.test_anonymize_relationships_1/2
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
130
diff
changeset
|
3794 SOP = '/instances/%s/content/ReferencedImageSequence/%d/ReferencedSOPInstanceUID' |
|
149144d854bb
Orthanc.test_anonymize_relationships_1/2
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
130
diff
changeset
|
3795 CLASS = '/instances/%s/content/ReferencedImageSequence/%d/ReferencedSOPClassUID' |
|
149144d854bb
Orthanc.test_anonymize_relationships_1/2
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
130
diff
changeset
|
3796 FRAME = '/instances/%s/content/FrameOfReferenceUID' |
|
149144d854bb
Orthanc.test_anonymize_relationships_1/2
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
130
diff
changeset
|
3797 |
|
149144d854bb
Orthanc.test_anonymize_relationships_1/2
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
130
diff
changeset
|
3798 self.assertEqual(DoGet(_REMOTE, FRAME % a1), |
|
149144d854bb
Orthanc.test_anonymize_relationships_1/2
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
130
diff
changeset
|
3799 DoGet(_REMOTE, FRAME % a2)) |
|
149144d854bb
Orthanc.test_anonymize_relationships_1/2
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
130
diff
changeset
|
3800 self.assertEqual(DoGet(_REMOTE, FRAME % b1), |
|
149144d854bb
Orthanc.test_anonymize_relationships_1/2
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
130
diff
changeset
|
3801 DoGet(_REMOTE, FRAME % b2)) |
|
149144d854bb
Orthanc.test_anonymize_relationships_1/2
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
130
diff
changeset
|
3802 self.assertNotEqual(DoGet(_REMOTE, FRAME % a1), |
|
149144d854bb
Orthanc.test_anonymize_relationships_1/2
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
130
diff
changeset
|
3803 DoGet(_REMOTE, FRAME % b1)) |
|
149144d854bb
Orthanc.test_anonymize_relationships_1/2
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
130
diff
changeset
|
3804 self.assertNotEqual(DoGet(_REMOTE, FRAME % a2), |
|
149144d854bb
Orthanc.test_anonymize_relationships_1/2
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
130
diff
changeset
|
3805 DoGet(_REMOTE, FRAME % b2)) |
|
149144d854bb
Orthanc.test_anonymize_relationships_1/2
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
130
diff
changeset
|
3806 |
|
149144d854bb
Orthanc.test_anonymize_relationships_1/2
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
130
diff
changeset
|
3807 self.assertEqual(3, len(DoGet(_REMOTE, SEQUENCE % a1))) |
|
149144d854bb
Orthanc.test_anonymize_relationships_1/2
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
130
diff
changeset
|
3808 self.assertEqual(3, len(DoGet(_REMOTE, SEQUENCE % a2))) |
|
149144d854bb
Orthanc.test_anonymize_relationships_1/2
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
130
diff
changeset
|
3809 self.assertEqual(3, len(DoGet(_REMOTE, SEQUENCE % b1))) |
|
149144d854bb
Orthanc.test_anonymize_relationships_1/2
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
130
diff
changeset
|
3810 self.assertEqual(3, len(DoGet(_REMOTE, SEQUENCE % b2))) |
|
149144d854bb
Orthanc.test_anonymize_relationships_1/2
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
130
diff
changeset
|
3811 |
|
149144d854bb
Orthanc.test_anonymize_relationships_1/2
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
130
diff
changeset
|
3812 for i in range(3): |
|
149144d854bb
Orthanc.test_anonymize_relationships_1/2
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
130
diff
changeset
|
3813 self.assertEqual(DoGet(_REMOTE, SOP % (a1, i)), |
|
149144d854bb
Orthanc.test_anonymize_relationships_1/2
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
130
diff
changeset
|
3814 DoGet(_REMOTE, SOP % (a2, i))) |
|
149144d854bb
Orthanc.test_anonymize_relationships_1/2
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
130
diff
changeset
|
3815 self.assertEqual(DoGet(_REMOTE, SOP % (b1, i)), |
|
149144d854bb
Orthanc.test_anonymize_relationships_1/2
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
130
diff
changeset
|
3816 DoGet(_REMOTE, SOP % (b2, i))) |
|
149144d854bb
Orthanc.test_anonymize_relationships_1/2
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
130
diff
changeset
|
3817 self.assertNotEqual(DoGet(_REMOTE, SOP % (a1, i)), |
|
149144d854bb
Orthanc.test_anonymize_relationships_1/2
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
130
diff
changeset
|
3818 DoGet(_REMOTE, SOP % (b1, i))) |
|
149144d854bb
Orthanc.test_anonymize_relationships_1/2
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
130
diff
changeset
|
3819 self.assertNotEqual(DoGet(_REMOTE, SOP % (a2, i)), |
|
149144d854bb
Orthanc.test_anonymize_relationships_1/2
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
130
diff
changeset
|
3820 DoGet(_REMOTE, SOP % (b2, i))) |
|
149144d854bb
Orthanc.test_anonymize_relationships_1/2
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
130
diff
changeset
|
3821 self.assertEqual(DoGet(_REMOTE, CLASS % (a1, i)), |
|
149144d854bb
Orthanc.test_anonymize_relationships_1/2
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
130
diff
changeset
|
3822 DoGet(_REMOTE, CLASS % (b1, i))) |
|
149144d854bb
Orthanc.test_anonymize_relationships_1/2
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
130
diff
changeset
|
3823 self.assertEqual(DoGet(_REMOTE, CLASS % (a2, i)), |
|
149144d854bb
Orthanc.test_anonymize_relationships_1/2
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
130
diff
changeset
|
3824 DoGet(_REMOTE, CLASS % (b2, i))) |
|
149144d854bb
Orthanc.test_anonymize_relationships_1/2
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
130
diff
changeset
|
3825 |
|
149144d854bb
Orthanc.test_anonymize_relationships_1/2
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
130
diff
changeset
|
3826 |
|
149144d854bb
Orthanc.test_anonymize_relationships_1/2
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
130
diff
changeset
|
3827 def test_anonymize_relationships_2(self): |
|
133
f0d4c4707e64
test_anonymize_relationships_3
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
132
diff
changeset
|
3828 UploadInstance(_REMOTE, 'Comunix/Ct/IM-0001-0001.dcm') |
|
f0d4c4707e64
test_anonymize_relationships_3
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
132
diff
changeset
|
3829 UploadInstance(_REMOTE, 'Comunix/Ct/IM-0001-0002.dcm') |
|
132
149144d854bb
Orthanc.test_anonymize_relationships_1/2
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
130
diff
changeset
|
3830 study = '6c65289b-db2fcb71-7eaf73f4-8e12470c-a4d6d7cf' |
|
149144d854bb
Orthanc.test_anonymize_relationships_1/2
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
130
diff
changeset
|
3831 |
|
149144d854bb
Orthanc.test_anonymize_relationships_1/2
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
130
diff
changeset
|
3832 anonymized = DoPost(_REMOTE, '/studies/%s/anonymize' % study, |
|
149144d854bb
Orthanc.test_anonymize_relationships_1/2
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
130
diff
changeset
|
3833 '{}', |
|
149144d854bb
Orthanc.test_anonymize_relationships_1/2
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
130
diff
changeset
|
3834 'application/json')['ID'] |
|
149144d854bb
Orthanc.test_anonymize_relationships_1/2
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
130
diff
changeset
|
3835 |
|
149144d854bb
Orthanc.test_anonymize_relationships_1/2
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
130
diff
changeset
|
3836 a = DoGet(_REMOTE, '/studies/%s/instances' % study) |
|
149144d854bb
Orthanc.test_anonymize_relationships_1/2
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
130
diff
changeset
|
3837 self.assertEqual(2, len(a)) |
|
149144d854bb
Orthanc.test_anonymize_relationships_1/2
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
130
diff
changeset
|
3838 a1 = a[0]['ID'] |
|
149144d854bb
Orthanc.test_anonymize_relationships_1/2
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
130
diff
changeset
|
3839 a2 = a[1]['ID'] |
|
149144d854bb
Orthanc.test_anonymize_relationships_1/2
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
130
diff
changeset
|
3840 |
|
149144d854bb
Orthanc.test_anonymize_relationships_1/2
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
130
diff
changeset
|
3841 b = DoGet(_REMOTE, '/studies/%s/instances' % anonymized) |
|
149144d854bb
Orthanc.test_anonymize_relationships_1/2
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
130
diff
changeset
|
3842 self.assertEqual(2, len(b)) |
|
149144d854bb
Orthanc.test_anonymize_relationships_1/2
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
130
diff
changeset
|
3843 b1 = b[0]['ID'] |
|
149144d854bb
Orthanc.test_anonymize_relationships_1/2
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
130
diff
changeset
|
3844 b2 = b[1]['ID'] |
|
149144d854bb
Orthanc.test_anonymize_relationships_1/2
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
130
diff
changeset
|
3845 |
|
149144d854bb
Orthanc.test_anonymize_relationships_1/2
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
130
diff
changeset
|
3846 SEQUENCE = '/instances/%s/content/SourceImageSequence' |
|
149144d854bb
Orthanc.test_anonymize_relationships_1/2
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
130
diff
changeset
|
3847 SOP = '/instances/%s/content/SourceImageSequence/%d/ReferencedSOPInstanceUID' |
|
149144d854bb
Orthanc.test_anonymize_relationships_1/2
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
130
diff
changeset
|
3848 CLASS = '/instances/%s/content/SourceImageSequence/%d/ReferencedSOPClassUID' |
|
149144d854bb
Orthanc.test_anonymize_relationships_1/2
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
130
diff
changeset
|
3849 |
|
149144d854bb
Orthanc.test_anonymize_relationships_1/2
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
130
diff
changeset
|
3850 self.assertEqual(1, len(DoGet(_REMOTE, SEQUENCE % a1))) |
|
149144d854bb
Orthanc.test_anonymize_relationships_1/2
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
130
diff
changeset
|
3851 self.assertEqual(1, len(DoGet(_REMOTE, SEQUENCE % a2))) |
|
149144d854bb
Orthanc.test_anonymize_relationships_1/2
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
130
diff
changeset
|
3852 self.assertEqual(1, len(DoGet(_REMOTE, SEQUENCE % b1))) |
|
149144d854bb
Orthanc.test_anonymize_relationships_1/2
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
130
diff
changeset
|
3853 self.assertEqual(1, len(DoGet(_REMOTE, SEQUENCE % b2))) |
|
149144d854bb
Orthanc.test_anonymize_relationships_1/2
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
130
diff
changeset
|
3854 self.assertEqual(DoGet(_REMOTE, SOP % (a1, 0)), |
|
149144d854bb
Orthanc.test_anonymize_relationships_1/2
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
130
diff
changeset
|
3855 DoGet(_REMOTE, SOP % (a2, 0))) |
|
149144d854bb
Orthanc.test_anonymize_relationships_1/2
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
130
diff
changeset
|
3856 self.assertEqual(DoGet(_REMOTE, SOP % (b1, 0)), |
|
149144d854bb
Orthanc.test_anonymize_relationships_1/2
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
130
diff
changeset
|
3857 DoGet(_REMOTE, SOP % (b2, 0))) |
|
149144d854bb
Orthanc.test_anonymize_relationships_1/2
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
130
diff
changeset
|
3858 self.assertNotEqual(DoGet(_REMOTE, SOP % (a1, 0)), |
|
149144d854bb
Orthanc.test_anonymize_relationships_1/2
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
130
diff
changeset
|
3859 DoGet(_REMOTE, SOP % (b1, 0))) |
|
149144d854bb
Orthanc.test_anonymize_relationships_1/2
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
130
diff
changeset
|
3860 self.assertNotEqual(DoGet(_REMOTE, SOP % (a2, 0)), |
|
149144d854bb
Orthanc.test_anonymize_relationships_1/2
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
130
diff
changeset
|
3861 DoGet(_REMOTE, SOP % (b2, 0))) |
|
149144d854bb
Orthanc.test_anonymize_relationships_1/2
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
130
diff
changeset
|
3862 self.assertEqual(DoGet(_REMOTE, CLASS % (a1, 0)), |
|
149144d854bb
Orthanc.test_anonymize_relationships_1/2
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
130
diff
changeset
|
3863 DoGet(_REMOTE, CLASS % (b1, 0))) |
|
149144d854bb
Orthanc.test_anonymize_relationships_1/2
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
130
diff
changeset
|
3864 self.assertEqual(DoGet(_REMOTE, CLASS % (a2, 0)), |
|
149144d854bb
Orthanc.test_anonymize_relationships_1/2
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
130
diff
changeset
|
3865 DoGet(_REMOTE, CLASS % (b2, 0))) |
|
133
f0d4c4707e64
test_anonymize_relationships_3
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
132
diff
changeset
|
3866 |
|
f0d4c4707e64
test_anonymize_relationships_3
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
132
diff
changeset
|
3867 |
|
f0d4c4707e64
test_anonymize_relationships_3
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
132
diff
changeset
|
3868 def test_anonymize_relationships_3(self): |
|
f0d4c4707e64
test_anonymize_relationships_3
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
132
diff
changeset
|
3869 sr1 = UploadInstance(_REMOTE, 'HierarchicalAnonymization/StructuredReports/IM0')['ID'] |
|
f0d4c4707e64
test_anonymize_relationships_3
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
132
diff
changeset
|
3870 mr1 = UploadInstance(_REMOTE, 'HierarchicalAnonymization/StructuredReports/IM631')['ID'] |
|
f0d4c4707e64
test_anonymize_relationships_3
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
132
diff
changeset
|
3871 study = 'ef351eb2-c1147229-062736b8-35a151e3-e32d526b' |
|
f0d4c4707e64
test_anonymize_relationships_3
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
132
diff
changeset
|
3872 |
|
f0d4c4707e64
test_anonymize_relationships_3
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
132
diff
changeset
|
3873 anonymized = DoPost(_REMOTE, '/studies/%s/anonymize' % study, |
|
f0d4c4707e64
test_anonymize_relationships_3
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
132
diff
changeset
|
3874 { "Keep" : [ "ContentSequence" ] }) ['ID'] |
|
f0d4c4707e64
test_anonymize_relationships_3
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
132
diff
changeset
|
3875 |
|
f0d4c4707e64
test_anonymize_relationships_3
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
132
diff
changeset
|
3876 a = DoGet(_REMOTE, '/studies/%s/instances' % anonymized) |
|
f0d4c4707e64
test_anonymize_relationships_3
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
132
diff
changeset
|
3877 self.assertEqual(2, len(a)) |
|
f0d4c4707e64
test_anonymize_relationships_3
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
132
diff
changeset
|
3878 |
|
f0d4c4707e64
test_anonymize_relationships_3
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
132
diff
changeset
|
3879 if DoGet(_REMOTE, '/instances/%s/content/Modality' % a[0]['ID']) == 'SR': |
|
f0d4c4707e64
test_anonymize_relationships_3
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
132
diff
changeset
|
3880 sr2 = a[0]['ID'] |
|
f0d4c4707e64
test_anonymize_relationships_3
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
132
diff
changeset
|
3881 mr2 = a[1]['ID'] |
|
f0d4c4707e64
test_anonymize_relationships_3
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
132
diff
changeset
|
3882 else: |
|
f0d4c4707e64
test_anonymize_relationships_3
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
132
diff
changeset
|
3883 sr2 = a[1]['ID'] |
|
f0d4c4707e64
test_anonymize_relationships_3
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
132
diff
changeset
|
3884 mr2 = a[0]['ID'] |
|
f0d4c4707e64
test_anonymize_relationships_3
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
132
diff
changeset
|
3885 |
|
f0d4c4707e64
test_anonymize_relationships_3
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
132
diff
changeset
|
3886 self.assertEqual(DoGet(_REMOTE, '/instances/%s/content/Modality' % sr1), |
|
f0d4c4707e64
test_anonymize_relationships_3
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
132
diff
changeset
|
3887 DoGet(_REMOTE, '/instances/%s/content/Modality' % sr2)) |
|
f0d4c4707e64
test_anonymize_relationships_3
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
132
diff
changeset
|
3888 self.assertEqual(DoGet(_REMOTE, '/instances/%s/content/Modality' % mr1), |
|
f0d4c4707e64
test_anonymize_relationships_3
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
132
diff
changeset
|
3889 DoGet(_REMOTE, '/instances/%s/content/Modality' % mr2)) |
|
f0d4c4707e64
test_anonymize_relationships_3
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
132
diff
changeset
|
3890 |
|
f0d4c4707e64
test_anonymize_relationships_3
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
132
diff
changeset
|
3891 mrUid1 = DoGet(_REMOTE, '/instances/%s' % mr1)['MainDicomTags']['SOPInstanceUID'] |
|
f0d4c4707e64
test_anonymize_relationships_3
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
132
diff
changeset
|
3892 mrUid2 = DoGet(_REMOTE, '/instances/%s' % mr2)['MainDicomTags']['SOPInstanceUID'] |
|
f0d4c4707e64
test_anonymize_relationships_3
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
132
diff
changeset
|
3893 mrSeries1 = DoGet(_REMOTE, '/instances/%s/content/SeriesInstanceUID' % mr1).strip('\x00') |
|
f0d4c4707e64
test_anonymize_relationships_3
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
132
diff
changeset
|
3894 mrSeries2 = DoGet(_REMOTE, '/instances/%s/content/SeriesInstanceUID' % mr2).strip('\x00') |
|
f0d4c4707e64
test_anonymize_relationships_3
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
132
diff
changeset
|
3895 mrStudy1 = DoGet(_REMOTE, '/instances/%s/content/StudyInstanceUID' % mr1).strip('\x00') |
|
f0d4c4707e64
test_anonymize_relationships_3
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
132
diff
changeset
|
3896 mrStudy2 = DoGet(_REMOTE, '/instances/%s/content/StudyInstanceUID' % mr2).strip('\x00') |
|
f0d4c4707e64
test_anonymize_relationships_3
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
132
diff
changeset
|
3897 |
|
f0d4c4707e64
test_anonymize_relationships_3
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
132
diff
changeset
|
3898 PATH1 = '/instances/%s/content/CurrentRequestedProcedureEvidenceSequence' |
|
f0d4c4707e64
test_anonymize_relationships_3
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
132
diff
changeset
|
3899 PATH2 = PATH1 + '/0/ReferencedSeriesSequence' |
|
f0d4c4707e64
test_anonymize_relationships_3
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
132
diff
changeset
|
3900 PATH3 = PATH2 + '/0/ReferencedSOPSequence' |
|
f0d4c4707e64
test_anonymize_relationships_3
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
132
diff
changeset
|
3901 PATH4 = PATH3 + '/0/ReferencedSOPInstanceUID' |
|
f0d4c4707e64
test_anonymize_relationships_3
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
132
diff
changeset
|
3902 PATH5 = PATH3 + '/0/ReferencedSOPClassUID' |
|
f0d4c4707e64
test_anonymize_relationships_3
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
132
diff
changeset
|
3903 |
|
f0d4c4707e64
test_anonymize_relationships_3
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
132
diff
changeset
|
3904 self.assertEqual(1, len(DoGet(_REMOTE, PATH1 % sr1))) |
|
f0d4c4707e64
test_anonymize_relationships_3
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
132
diff
changeset
|
3905 self.assertEqual(1, len(DoGet(_REMOTE, PATH2 % sr1))) |
|
f0d4c4707e64
test_anonymize_relationships_3
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
132
diff
changeset
|
3906 self.assertEqual(1, len(DoGet(_REMOTE, PATH3 % sr1))) |
|
f0d4c4707e64
test_anonymize_relationships_3
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
132
diff
changeset
|
3907 self.assertEqual(DoGet(_REMOTE, PATH4 % sr1), mrUid1) |
|
f0d4c4707e64
test_anonymize_relationships_3
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
132
diff
changeset
|
3908 self.assertEqual(mrSeries1, DoGet(_REMOTE, (PATH2 + '/0/SeriesInstanceUID') % sr1).strip('\x00')) |
|
f0d4c4707e64
test_anonymize_relationships_3
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
132
diff
changeset
|
3909 self.assertEqual(mrStudy1, DoGet(_REMOTE, (PATH1 + '/0/StudyInstanceUID') % sr1).strip('\x00')) |
|
f0d4c4707e64
test_anonymize_relationships_3
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
132
diff
changeset
|
3910 |
|
f0d4c4707e64
test_anonymize_relationships_3
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
132
diff
changeset
|
3911 self.assertEqual(1, len(DoGet(_REMOTE, PATH1 % sr2))) |
|
f0d4c4707e64
test_anonymize_relationships_3
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
132
diff
changeset
|
3912 self.assertEqual(1, len(DoGet(_REMOTE, PATH2 % sr2))) |
|
f0d4c4707e64
test_anonymize_relationships_3
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
132
diff
changeset
|
3913 self.assertEqual(1, len(DoGet(_REMOTE, PATH3 % sr2))) |
|
f0d4c4707e64
test_anonymize_relationships_3
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
132
diff
changeset
|
3914 self.assertEqual(DoGet(_REMOTE, PATH5 % sr1), DoGet(_REMOTE, PATH5 % sr2)) |
|
f0d4c4707e64
test_anonymize_relationships_3
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
132
diff
changeset
|
3915 |
|
f0d4c4707e64
test_anonymize_relationships_3
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
132
diff
changeset
|
3916 self.assertEqual(mrUid2, DoGet(_REMOTE, PATH4 % sr2).strip('\x00')) |
|
f0d4c4707e64
test_anonymize_relationships_3
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
132
diff
changeset
|
3917 self.assertEqual(mrSeries2, DoGet(_REMOTE, (PATH2 + '/0/SeriesInstanceUID') % sr2).strip('\x00')) |
|
f0d4c4707e64
test_anonymize_relationships_3
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
132
diff
changeset
|
3918 self.assertEqual(mrStudy2, DoGet(_REMOTE, (PATH1 + '/0/StudyInstanceUID') % sr2).strip('\x00')) |
|
f0d4c4707e64
test_anonymize_relationships_3
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
132
diff
changeset
|
3919 |
|
f0d4c4707e64
test_anonymize_relationships_3
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
132
diff
changeset
|
3920 content1 = DoGet(_REMOTE, '/instances/%s/tags?simplify' % sr1) ['ContentSequence'] |
|
f0d4c4707e64
test_anonymize_relationships_3
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
132
diff
changeset
|
3921 content2 = DoGet(_REMOTE, '/instances/%s/tags?simplify' % sr2) ['ContentSequence'] |
|
f0d4c4707e64
test_anonymize_relationships_3
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
132
diff
changeset
|
3922 self.assertEqual(str(content1), str(content2)) |
|
141
5de178abe4d8
test_bitbucket_issue_94
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
138
diff
changeset
|
3923 |
|
5de178abe4d8
test_bitbucket_issue_94
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
138
diff
changeset
|
3924 |
|
5de178abe4d8
test_bitbucket_issue_94
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
138
diff
changeset
|
3925 def test_bitbucket_issue_94(self): |
|
5de178abe4d8
test_bitbucket_issue_94
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
138
diff
changeset
|
3926 # "a simple instance modification should not modify FrameOfReferenceUID + ..." |
| 319 | 3927 # https://bugs.orthanc-server.com/show_bug.cgi?id=94 |
|
141
5de178abe4d8
test_bitbucket_issue_94
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
138
diff
changeset
|
3928 i = UploadInstance(_REMOTE, 'Issue94.dcm')['ID'] |
|
5de178abe4d8
test_bitbucket_issue_94
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
138
diff
changeset
|
3929 |
|
5de178abe4d8
test_bitbucket_issue_94
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
138
diff
changeset
|
3930 source = DoGet(_REMOTE, '/instances/%s/attachments/dicom/data' % i) |
|
5de178abe4d8
test_bitbucket_issue_94
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
138
diff
changeset
|
3931 |
|
5de178abe4d8
test_bitbucket_issue_94
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
138
diff
changeset
|
3932 modified = DoPost(_REMOTE, '/instances/%s/modify' % i, |
|
5de178abe4d8
test_bitbucket_issue_94
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
138
diff
changeset
|
3933 { "Replace" : {"PatientID" : "toto"}, "Force": True}) |
|
5de178abe4d8
test_bitbucket_issue_94
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
138
diff
changeset
|
3934 |
|
5de178abe4d8
test_bitbucket_issue_94
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
138
diff
changeset
|
3935 anonymized = DoPost(_REMOTE, '/instances/%s/anonymize' % i) |
|
5de178abe4d8
test_bitbucket_issue_94
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
138
diff
changeset
|
3936 |
|
5de178abe4d8
test_bitbucket_issue_94
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
138
diff
changeset
|
3937 a = ExtractDicomTags(source, [ 'FrameOfReferenceUID' ]) |
|
5de178abe4d8
test_bitbucket_issue_94
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
138
diff
changeset
|
3938 self.assertEqual(1, len(a)) |
|
5de178abe4d8
test_bitbucket_issue_94
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
138
diff
changeset
|
3939 |
|
5de178abe4d8
test_bitbucket_issue_94
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
138
diff
changeset
|
3940 b = ExtractDicomTags(modified, [ 'FrameOfReferenceUID' ]) |
|
5de178abe4d8
test_bitbucket_issue_94
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
138
diff
changeset
|
3941 self.assertEqual(1, len(b)) |
|
5de178abe4d8
test_bitbucket_issue_94
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
138
diff
changeset
|
3942 |
|
5de178abe4d8
test_bitbucket_issue_94
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
138
diff
changeset
|
3943 c = ExtractDicomTags(anonymized, [ 'FrameOfReferenceUID' ]) |
|
5de178abe4d8
test_bitbucket_issue_94
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
138
diff
changeset
|
3944 self.assertEqual(1, len(c)) |
|
5de178abe4d8
test_bitbucket_issue_94
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
138
diff
changeset
|
3945 |
|
5de178abe4d8
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3946 self.assertEqual(a, b) # Modified DICOM |
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test_bitbucket_issue_94
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|
3947 self.assertNotEqual(a, c) # Anonymized DICOM |
|
143
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test_metadata_origin
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3948 |
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test_metadata_origin
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3949 |
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|
3950 def test_metadata_origin(self): |
|
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3951 # Upload using the REST API |
|
144
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3952 i = UploadInstance(_REMOTE, 'Knee/T1/IM-0001-0001.dcm')['ID'] |
|
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3953 self.assertEqual('RestApi', DoGet(_REMOTE, '/instances/%s/metadata/Origin' % i)) |
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3954 self.assertEqual('', DoGet(_REMOTE, '/instances/%s/metadata/RemoteAET' % i)) |
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3955 self.assertNotEqual('', DoGet(_REMOTE, '/instances/%s/metadata/RemoteIP' % i)) |
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3956 self.assertRaises(Exception, lambda: DoGet(_REMOTE, '/instances/%s/metadata/CalledAET' % i)) |
| 315 | 3957 |
| 3958 # "HttpUsername" is empty iff "AuthenticationEnabled" is "false" | |
| 3959 self.assertTrue(DoGet(_REMOTE, '/instances/%s/metadata/HttpUsername' % i) in [ '', 'alice' ]) | |
| 3960 | |
|
144
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3961 m = DoGet(_REMOTE, '/instances/%s/metadata?expand' % i) |
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3962 self.assertEqual('RestApi', m['Origin']) |
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|
3963 self.assertEqual('', m['RemoteAET']) |
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changeset
|
3964 self.assertNotEqual('', m['RemoteIP']) |
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|
3965 self.assertFalse('CalledAET' in m) |
| 315 | 3966 self.assertTrue('HttpUsername' in m) |
| 3967 self.assertTrue(m['HttpUsername'] in [ '', 'alice' ]) | |
|
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3968 |
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|
3969 self.assertEqual('1.2.840.10008.1.2.4.91', m['TransferSyntax']) |
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changeset
|
3970 self.assertEqual('1.2.840.10008.5.1.4.1.1.4', m['SopClassUid']) |
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|
3971 self.assertEqual('1', m['IndexInSeries']) |
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3972 self.assertTrue('ReceptionDate' in m) |
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3973 |
|
143
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test_metadata_origin
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|
3974 DoDelete(_REMOTE, '/instances/%s' % i) |
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test_metadata_origin
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3975 |
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test_metadata_origin
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|
3976 # Upload using the DICOM protocol |
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|
3977 subprocess.check_call([ FindExecutable('storescu'), |
|
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|
3978 _REMOTE['Server'], str(_REMOTE['DicomPort']), |
|
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|
3979 GetDatabasePath('Knee/T1/IM-0001-0001.dcm'), |
|
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|
3980 '-xw' ]) # Propose JPEG2000 |
|
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3981 self.assertEqual('DicomProtocol', DoGet(_REMOTE, '/instances/%s/metadata/Origin' % i)) |
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|
3982 self.assertEqual('STORESCU', DoGet(_REMOTE, '/instances/%s/metadata/RemoteAET' % i)) |
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|
3983 self.assertNotEqual('', DoGet(_REMOTE, '/instances/%s/metadata/RemoteIP' % i)) |
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test_metadata_origin
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changeset
|
3984 self.assertEqual('ANY-SCP', DoGet(_REMOTE, '/instances/%s/metadata/CalledAET' % i)) |
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|
3985 self.assertRaises(Exception, lambda: DoGet(_REMOTE, '/instances/%s/metadata/HttpUsername' % i)) |
|
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|
3986 |
|
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changeset
|
3987 m = DoGet(_REMOTE, '/instances/%s/metadata?expand' % i) |
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changeset
|
3988 self.assertEqual('DicomProtocol', m['Origin']) |
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|
3989 self.assertEqual('STORESCU', m['RemoteAET']) |
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changeset
|
3990 self.assertNotEqual('', m['RemoteIP']) |
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3991 self.assertEqual('ANY-SCP', m['CalledAET']) |
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3992 self.assertFalse('HttpUsername' in m) |
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|
3993 |
|
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changeset
|
3994 self.assertEqual('1.2.840.10008.1.2.4.91', m['TransferSyntax']) |
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changeset
|
3995 self.assertEqual('1.2.840.10008.5.1.4.1.1.4', m['SopClassUid']) |
|
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changeset
|
3996 self.assertEqual('1', m['IndexInSeries']) |
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changeset
|
3997 self.assertTrue('ReceptionDate' in m) |
| 147 | 3998 |
| 3999 | |
| 4000 def test_lua_deadlock(self): | |
| 4001 # Rana Asim Wajid (2018-07-14): "It does seem that the issue | |
| 4002 # is with the lua script I'm using for conversion of images to | |
| 4003 # JPEG2000. When the script is used with 1.4.0 the first | |
| 4004 # instance appears to be stored and then everything just | |
| 4005 # halts, ie Orthanc wont respond to anything after that." | |
| 4006 # https://groups.google.com/d/msg/orthanc-users/Rc-Beb42xc8/JUgdzrmCAgAJ | |
| 174 | 4007 InstallLuaScriptFromPath(_REMOTE, 'Lua/Jpeg2000Conversion.lua') |
| 147 | 4008 |
| 4009 subprocess.check_call([ FindExecutable('storescu'), | |
| 4010 _REMOTE['Server'], str(_REMOTE['DicomPort']), | |
| 4011 GetDatabasePath('Brainix/Flair/IM-0001-0001.dcm'), | |
| 4012 GetDatabasePath('Brainix/Flair/IM-0001-0002.dcm'), | |
| 4013 ]) | |
| 4014 | |
| 4015 instances = DoGet(_REMOTE, '/instances') | |
| 4016 self.assertEqual(2, len(instances)) | |
| 4017 | |
| 4018 t1 = DoGet(_REMOTE, '/instances/%s/metadata/TransferSyntax' % instances[0]) | |
| 4019 t2 = DoGet(_REMOTE, '/instances/%s/metadata/TransferSyntax' % instances[1]) | |
| 175 | 4020 self.assertEqual('1.2.840.10008.1.2.4.90', t1) # this will fail if libgdcm-tools is not installed |
| 147 | 4021 self.assertEqual(t1, t2); |
|
154
4a533d003080
test_find_group_length
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diff
changeset
|
4022 |
|
4a533d003080
test_find_group_length
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diff
changeset
|
4023 |
|
4a533d003080
test_find_group_length
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diff
changeset
|
4024 def test_find_group_length(self): |
|
4a533d003080
test_find_group_length
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parents:
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diff
changeset
|
4025 # Orthanc <= 1.4.1 fails to answer C-FIND queries that contain |
|
4a533d003080
test_find_group_length
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diff
changeset
|
4026 # one of the Generic Group Length tags (*, 0x0000) |
|
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test_find_group_length
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diff
changeset
|
4027 a = UploadInstance(_REMOTE, 'Brainix/Flair/IM-0001-0001.dcm')['ID'] |
|
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test_find_group_length
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diff
changeset
|
4028 result = CallFindScu([ '-k', '0008,0052=STUDY', '-k', '0008,0000=80' ]) |
|
4a533d003080
test_find_group_length
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parents:
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diff
changeset
|
4029 self.assertFalse('UnableToProcess' in result) |
|
4a533d003080
test_find_group_length
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diff
changeset
|
4030 self.assertFalse('E:' in result) |
|
179
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changeset
|
4031 |
|
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diff
changeset
|
4032 |
|
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diff
changeset
|
4033 def test_split(self): |
|
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changeset
|
4034 UploadInstance(_REMOTE, 'Knee/T1/IM-0001-0001.dcm') |
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changeset
|
4035 UploadInstance(_REMOTE, 'Knee/T2/IM-0001-0001.dcm') |
|
254
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diff
changeset
|
4036 knee1Sop = '1.3.46.670589.11.17521.5.0.3124.2008081908590448738' |
|
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diff
changeset
|
4037 knee2Sop = '1.3.46.670589.11.17521.5.0.3124.2008081909113806560' |
|
179
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diff
changeset
|
4038 study = '0a9b3153-2512774b-2d9580de-1fc3dcf6-3bd83918' |
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diff
changeset
|
4039 t1 = '6de73705-c4e65c1b-9d9ea1b5-cabcd8e7-f15e4285' |
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diff
changeset
|
4040 t2 = 'bbf7a453-0d34251a-03663b55-46bb31b9-ffd74c59' |
|
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diff
changeset
|
4041 |
|
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diff
changeset
|
4042 self.assertEqual(1, len(DoGet(_REMOTE, '/studies'))) |
|
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diff
changeset
|
4043 self.assertEqual(2, len(DoGet(_REMOTE, '/series'))) |
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diff
changeset
|
4044 |
|
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diff
changeset
|
4045 info = DoGet(_REMOTE, '/studies/%s' % study) |
|
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diff
changeset
|
4046 self.assertTrue('ReferringPhysicianName' in info['MainDicomTags']) |
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diff
changeset
|
4047 |
|
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diff
changeset
|
4048 job = MonitorJob2(_REMOTE, lambda: DoPost |
|
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diff
changeset
|
4049 (_REMOTE, '/studies/%s/split' % study, { |
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diff
changeset
|
4050 'Series' : [ t2 ], |
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diff
changeset
|
4051 'Replace' : { 'PatientName' : 'Hello' }, |
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diff
changeset
|
4052 'Remove' : [ 'ReferringPhysicianName' ], |
| 181 | 4053 'KeepSource' : False, |
| 4054 'Asynchronous' : True | |
|
179
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diff
changeset
|
4055 })) |
|
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diff
changeset
|
4056 |
|
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diff
changeset
|
4057 self.assertNotEqual(None, job) |
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diff
changeset
|
4058 |
|
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diff
changeset
|
4059 studies = set(DoGet(_REMOTE, '/studies')) |
|
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diff
changeset
|
4060 self.assertEqual(2, len(studies)) |
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diff
changeset
|
4061 |
|
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diff
changeset
|
4062 series = set(DoGet(_REMOTE, '/series')) |
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diff
changeset
|
4063 self.assertEqual(2, len(series)) |
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changeset
|
4064 self.assertTrue(t1 in series) |
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diff
changeset
|
4065 |
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diff
changeset
|
4066 study2 = DoGet(_REMOTE, '/jobs/%s' % job)['Content']['TargetStudy'] |
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diff
changeset
|
4067 self.assertTrue(study in studies) |
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changeset
|
4068 self.assertTrue(study2 in studies) |
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diff
changeset
|
4069 |
|
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diff
changeset
|
4070 info = DoGet(_REMOTE, '/studies/%s' % study2) |
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changeset
|
4071 self.assertTrue('Hello', info['PatientMainDicomTags']['PatientName']) |
|
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changeset
|
4072 self.assertFalse('ReferringPhysicianName' in info['MainDicomTags']) |
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changeset
|
4073 |
|
254
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4074 sopInstanceUids = set() |
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4075 for i in DoGet(_REMOTE, '/instances?expand'): |
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4076 sopInstanceUids.add(i['MainDicomTags']['SOPInstanceUID']) |
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4077 |
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4078 self.assertTrue(knee1Sop in sopInstanceUids) |
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4079 |
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4080 # Fails if Orthanc <= 1.5.7 |
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4081 self.assertFalse(knee2Sop in sopInstanceUids) # Because "KeepSource" is False |
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4082 |
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4083 # One original instance is kept, another one is added because of the split |
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4084 self.assertEqual(2, len(sopInstanceUids)) |
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4085 |
|
179
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4086 |
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4087 def test_merge(self): |
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4088 UploadInstance(_REMOTE, 'Knee/T1/IM-0001-0001.dcm') |
|
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4089 UploadInstance(_REMOTE, 'Brainix/Flair/IM-0001-0001.dcm') |
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4090 kneeSop = '1.3.46.670589.11.17521.5.0.3124.2008081908590448738' |
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4091 brainixSop = '1.3.46.670589.11.0.0.11.4.2.0.8743.5.5396.2006120114314079549' |
|
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4092 knee = '0a9b3153-2512774b-2d9580de-1fc3dcf6-3bd83918' |
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4093 t1 = '6de73705-c4e65c1b-9d9ea1b5-cabcd8e7-f15e4285' |
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4094 brainix = '27f7126f-4f66fb14-03f4081b-f9341db2-53925988' |
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4095 flair = '1e2c125c-411b8e86-3f4fe68e-a7584dd3-c6da78f0' |
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4096 |
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4097 self.assertEqual(2, len(DoGet(_REMOTE, '/studies'))) |
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4098 self.assertEqual(2, len(DoGet(_REMOTE, '/series'))) |
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4099 |
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4100 job = MonitorJob2(_REMOTE, lambda: DoPost |
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4101 (_REMOTE, '/studies/%s/merge' % knee, { |
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4102 'Resources' : [ brainix ], |
| 181 | 4103 'KeepSource' : True, |
| 4104 'Synchronous' : False | |
|
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4105 })) |
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4106 |
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4107 self.assertNotEqual(None, job) |
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4108 |
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4109 studies = set(DoGet(_REMOTE, '/studies')) |
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4110 self.assertEqual(2, len(studies)) |
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4111 self.assertTrue(knee in studies) |
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4112 self.assertTrue(brainix in studies) |
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4113 |
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4114 series = set(DoGet(_REMOTE, '/studies/%s' % knee)['Series']) |
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4115 self.assertTrue(t1 in series) |
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4116 series.remove(t1) |
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4117 self.assertEqual(1, len(series)) |
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4118 |
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4119 instances = DoGet(_REMOTE, '/series/%s' % list(series)[0])['Instances'] |
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4120 self.assertEqual(1, len(instances)) |
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4121 merged = DoGet(_REMOTE, '/instances/%s/tags?simplify' % instances[0]) |
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4122 |
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4123 instances = DoGet(_REMOTE, '/series/%s' % t1)['Instances'] |
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4124 self.assertEqual(1, len(instances)) |
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4125 a = DoGet(_REMOTE, '/instances/%s/tags?simplify' % instances[0]) |
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4126 |
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4127 instances = DoGet(_REMOTE, '/series/%s' % flair)['Instances'] |
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4128 self.assertEqual(1, len(instances)) |
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4129 b = DoGet(_REMOTE, '/instances/%s/tags?simplify' % instances[0]) |
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4130 |
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4131 tags = DoGet(_REMOTE, '/studies/%s' % knee) |
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4132 |
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4133 for key in tags['PatientMainDicomTags']: |
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4134 self.assertEqual(a[key], merged[key]) |
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4135 if (key in b and key != 'PatientSex'): |
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4136 self.assertNotEqual(a[key], b[key]) |
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4137 |
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4138 for key in tags['MainDicomTags']: |
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4139 # Not in the patient/study module |
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4140 if (not key in [ 'InstitutionName', |
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4141 'RequestingPhysician', |
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4142 'RequestedProcedureDescription', ]): |
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4143 self.assertEqual(a[key], merged[key]) |
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4144 if (key in b): |
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4145 self.assertNotEqual(a[key], b[key]) |
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4146 |
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4147 sopInstanceUids = set() |
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4148 for i in DoGet(_REMOTE, '/instances?expand'): |
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4149 sopInstanceUids.add(i['MainDicomTags']['SOPInstanceUID']) |
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4150 |
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4151 self.assertTrue(kneeSop in sopInstanceUids) |
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4152 self.assertTrue(brainixSop in sopInstanceUids) |
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4153 |
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4154 # Fails if Orthanc <= 1.5.7 |
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4155 # The 2 original instances are kept, another one is added because of the merge |
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4156 self.assertEqual(3, len(sopInstanceUids)) |
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4157 |
| 187 | 4158 |
| 4159 def test_async_archive(self): | |
| 4160 # Testing the asynchronous generation of archives/medias (new | |
| 4161 # in Orthanc 1.4.3) | |
| 4162 UploadInstance(_REMOTE, 'Knee/T1/IM-0001-0001.dcm') | |
| 4163 UploadInstance(_REMOTE, 'Knee/T2/IM-0001-0001.dcm') | |
| 4164 | |
| 4165 kneeT1 = '6de73705-c4e65c1b-9d9ea1b5-cabcd8e7-f15e4285' | |
| 4166 kneeT2 = 'bbf7a453-0d34251a-03663b55-46bb31b9-ffd74c59' | |
| 4167 | |
| 4168 job = MonitorJob2(_REMOTE, lambda: DoPost | |
| 4169 (_REMOTE, '/studies/%s/archive' % kneeT1, { | |
| 4170 'Synchronous' : False | |
| 4171 })) | |
| 4172 | |
| 4173 z = GetArchive(_REMOTE, '/jobs/%s/archive' % job) | |
| 4174 self.assertEqual(1, len(z.namelist())) | |
| 4175 self.assertFalse('DICOMDIR' in z.namelist()) | |
| 4176 | |
| 4177 job2 = MonitorJob2(_REMOTE, lambda: DoPost | |
| 4178 (_REMOTE, '/studies/%s/media' % kneeT1, { | |
| 4179 'Synchronous' : False | |
| 4180 })) | |
| 4181 | |
| 4182 # The archive from the first job has been replaced by the | |
| 4183 # archive from second job (as MediaArchiveSize == 1) | |
| 4184 self.assertRaises(Exception, lambda: GetArchive(_REMOTE, '/jobs/%s/archive' % job)) | |
| 4185 | |
| 4186 z = GetArchive(_REMOTE, '/jobs/%s/archive' % job2) | |
| 4187 self.assertEqual(2, len(z.namelist())) | |
| 4188 self.assertTrue('DICOMDIR' in z.namelist()) | |
| 4189 | |
| 4190 job = MonitorJob2(_REMOTE, lambda: DoPost | |
| 4191 (_REMOTE, '/tools/create-archive', { | |
| 4192 'Synchronous' : False, | |
| 4193 'Resources' : [ kneeT1, kneeT2 ], | |
| 4194 })) | |
| 4195 | |
| 4196 z = GetArchive(_REMOTE, '/jobs/%s/archive' % job) | |
| 4197 self.assertEqual(2, len(z.namelist())) | |
| 4198 self.assertFalse('DICOMDIR' in z.namelist()) | |
| 4199 | |
| 4200 job = MonitorJob2(_REMOTE, lambda: DoPost | |
| 4201 (_REMOTE, '/tools/create-media', { | |
| 4202 'Synchronous' : False, | |
| 4203 'Resources' : [ kneeT1, kneeT2 ], | |
| 4204 })) | |
| 4205 | |
| 4206 z = GetArchive(_REMOTE, '/jobs/%s/archive' % job) | |
| 4207 self.assertEqual(3, len(z.namelist())) | |
| 4208 self.assertTrue('DICOMDIR' in z.namelist()) | |
|
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4209 |
| 187 | 4210 |
|
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4211 def test_queries_hierarchy(self): |
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4212 UploadInstance(_REMOTE, 'Knee/T1/IM-0001-0001.dcm') |
|
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4213 UploadInstance(_REMOTE, 'Brainix/Flair/IM-0001-0001.dcm') |
|
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4214 |
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4215 tags = { |
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4216 'NumberOfPatientRelatedInstances' : '', |
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4217 'NumberOfPatientRelatedSeries' : '', |
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4218 'NumberOfPatientRelatedStudies' : '', |
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4219 'NumberOfStudyRelatedInstances' : '', |
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4220 'NumberOfStudyRelatedSeries' : '', |
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diff
changeset
|
4221 'NumberOfSeriesRelatedInstances' : '', |
|
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diff
changeset
|
4222 } |
|
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new test: test_queries_hierarchy
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diff
changeset
|
4223 |
|
189
11719f19bd62
test_dicom_disk_size
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188
diff
changeset
|
4224 tags2 = copy.copy(tags) |
|
11719f19bd62
test_dicom_disk_size
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188
diff
changeset
|
4225 tags2['PatientID'] = '887' # Only consider the "Knee" patient |
|
11719f19bd62
test_dicom_disk_size
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diff
changeset
|
4226 |
|
188
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new test: test_queries_hierarchy
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diff
changeset
|
4227 patient = DoPost(_REMOTE, '/modalities/self/query', { |
|
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|
4228 'Level' : 'Patient', |
|
189
11719f19bd62
test_dicom_disk_size
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diff
changeset
|
4229 'Query' : tags2 |
|
188
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diff
changeset
|
4230 }) ['ID'] |
|
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new test: test_queries_hierarchy
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diff
changeset
|
4231 |
|
7d585263808b
new test: test_queries_hierarchy
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diff
changeset
|
4232 study = DoPost(_REMOTE, '/modalities/self/query', { |
|
7d585263808b
new test: test_queries_hierarchy
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diff
changeset
|
4233 'Level' : 'Study', |
|
189
11719f19bd62
test_dicom_disk_size
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
188
diff
changeset
|
4234 'Query' : tags2 |
|
188
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new test: test_queries_hierarchy
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diff
changeset
|
4235 }) ['ID'] |
|
7d585263808b
new test: test_queries_hierarchy
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parents:
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diff
changeset
|
4236 |
|
7d585263808b
new test: test_queries_hierarchy
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diff
changeset
|
4237 series = DoPost(_REMOTE, '/modalities/self/query', { |
|
7d585263808b
new test: test_queries_hierarchy
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diff
changeset
|
4238 'Level' : 'Series', |
|
189
11719f19bd62
test_dicom_disk_size
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
188
diff
changeset
|
4239 'Query' : tags2 |
|
188
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new test: test_queries_hierarchy
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diff
changeset
|
4240 }) ['ID'] |
|
7d585263808b
new test: test_queries_hierarchy
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parents:
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diff
changeset
|
4241 |
|
7d585263808b
new test: test_queries_hierarchy
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diff
changeset
|
4242 instance = DoPost(_REMOTE, '/modalities/self/query', { |
|
7d585263808b
new test: test_queries_hierarchy
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diff
changeset
|
4243 'Level' : 'Instance', |
|
189
11719f19bd62
test_dicom_disk_size
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
188
diff
changeset
|
4244 'Query' : tags2 |
|
188
7d585263808b
new test: test_queries_hierarchy
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diff
changeset
|
4245 }) ['ID'] |
|
7d585263808b
new test: test_queries_hierarchy
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parents:
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diff
changeset
|
4246 |
|
7d585263808b
new test: test_queries_hierarchy
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187
diff
changeset
|
4247 p = DoGet(_REMOTE, '/queries/%s/answers?expand&simplify' % patient) |
|
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new test: test_queries_hierarchy
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diff
changeset
|
4248 self.assertEqual(1, len(p)) |
|
7d585263808b
new test: test_queries_hierarchy
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diff
changeset
|
4249 self.assertEqual('887', p[0]['PatientID']) |
|
7d585263808b
new test: test_queries_hierarchy
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diff
changeset
|
4250 self.assertEqual('1', p[0]['NumberOfPatientRelatedInstances']) |
|
7d585263808b
new test: test_queries_hierarchy
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diff
changeset
|
4251 self.assertEqual('1', p[0]['NumberOfPatientRelatedSeries']) |
|
7d585263808b
new test: test_queries_hierarchy
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diff
changeset
|
4252 self.assertEqual('1', p[0]['NumberOfPatientRelatedStudies']) |
|
7d585263808b
new test: test_queries_hierarchy
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diff
changeset
|
4253 self.assertFalse('NumberOfStudyRelatedInstances' in p[0]) |
|
7d585263808b
new test: test_queries_hierarchy
Sebastien Jodogne <s.jodogne@gmail.com>
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diff
changeset
|
4254 self.assertFalse('NumberOfStudyRelatedSeries' in p[0]) |
|
7d585263808b
new test: test_queries_hierarchy
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diff
changeset
|
4255 self.assertFalse('NumberOfSeriesRelatedInstances' in p[0]) |
|
7d585263808b
new test: test_queries_hierarchy
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parents:
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diff
changeset
|
4256 |
|
7d585263808b
new test: test_queries_hierarchy
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diff
changeset
|
4257 p = DoGet(_REMOTE, '/queries/%s/answers?expand&simplify' % study) |
|
7d585263808b
new test: test_queries_hierarchy
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diff
changeset
|
4258 self.assertEqual(1, len(p)) |
|
7d585263808b
new test: test_queries_hierarchy
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diff
changeset
|
4259 self.assertEqual('2.16.840.1.113669.632.20.121711.10000160881', p[0]['StudyInstanceUID']) |
|
7d585263808b
new test: test_queries_hierarchy
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diff
changeset
|
4260 self.assertEqual('1', p[0]['NumberOfStudyRelatedInstances']) |
|
7d585263808b
new test: test_queries_hierarchy
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diff
changeset
|
4261 self.assertEqual('1', p[0]['NumberOfStudyRelatedSeries']) |
|
7d585263808b
new test: test_queries_hierarchy
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
changeset
|
4262 self.assertFalse('NumberOfPatientRelatedInstances' in p[0]) |
|
7d585263808b
new test: test_queries_hierarchy
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parents:
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diff
changeset
|
4263 self.assertFalse('NumberOfPatientRelatedSeries' in p[0]) |
|
7d585263808b
new test: test_queries_hierarchy
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
187
diff
changeset
|
4264 self.assertFalse('NumberOfPatientRelatedInstances' in p[0]) |
|
7d585263808b
new test: test_queries_hierarchy
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
187
diff
changeset
|
4265 self.assertFalse('NumberOfSeriesRelatedInstances' in p[0]) |
|
7d585263808b
new test: test_queries_hierarchy
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
187
diff
changeset
|
4266 |
|
7d585263808b
new test: test_queries_hierarchy
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
187
diff
changeset
|
4267 p = DoGet(_REMOTE, '/queries/%s/answers?expand&simplify' % series) |
|
7d585263808b
new test: test_queries_hierarchy
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
187
diff
changeset
|
4268 self.assertEqual(1, len(p)) |
|
7d585263808b
new test: test_queries_hierarchy
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
187
diff
changeset
|
4269 self.assertEqual('1.3.46.670589.11.17521.5.0.3124.2008081908564160709', p[0]['SeriesInstanceUID']) |
|
7d585263808b
new test: test_queries_hierarchy
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
187
diff
changeset
|
4270 self.assertEqual('1', p[0]['NumberOfSeriesRelatedInstances']) |
|
7d585263808b
new test: test_queries_hierarchy
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
187
diff
changeset
|
4271 self.assertFalse('NumberOfPatientRelatedInstances' in p[0]) |
|
7d585263808b
new test: test_queries_hierarchy
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
187
diff
changeset
|
4272 self.assertFalse('NumberOfPatientRelatedSeries' in p[0]) |
|
7d585263808b
new test: test_queries_hierarchy
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
187
diff
changeset
|
4273 self.assertFalse('NumberOfPatientRelatedInstances' in p[0]) |
|
7d585263808b
new test: test_queries_hierarchy
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
187
diff
changeset
|
4274 self.assertFalse('NumberOfStudyRelatedInstances' in p[0]) |
|
7d585263808b
new test: test_queries_hierarchy
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
187
diff
changeset
|
4275 self.assertFalse('NumberOfStudyRelatedSeries' in p[0]) |
|
7d585263808b
new test: test_queries_hierarchy
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
187
diff
changeset
|
4276 |
|
7d585263808b
new test: test_queries_hierarchy
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
187
diff
changeset
|
4277 p = DoGet(_REMOTE, '/queries/%s/answers?expand&simplify' % instance) |
|
7d585263808b
new test: test_queries_hierarchy
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
187
diff
changeset
|
4278 self.assertEqual(1, len(p)) |
|
7d585263808b
new test: test_queries_hierarchy
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
187
diff
changeset
|
4279 self.assertEqual('1.3.46.670589.11.17521.5.0.3124.2008081908590448738', p[0]['SOPInstanceUID']) |
|
7d585263808b
new test: test_queries_hierarchy
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
187
diff
changeset
|
4280 |
|
7d585263808b
new test: test_queries_hierarchy
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
187
diff
changeset
|
4281 j = DoPost(_REMOTE, '/queries/%s/answers/0/query-studies' % patient, |
|
7d585263808b
new test: test_queries_hierarchy
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
187
diff
changeset
|
4282 { 'Query' : tags }) ['ID'] |
|
7d585263808b
new test: test_queries_hierarchy
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
187
diff
changeset
|
4283 self.assertEqual(DoGet(_REMOTE, '/queries/%s/answers?expand&simplify' % j), |
|
7d585263808b
new test: test_queries_hierarchy
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
187
diff
changeset
|
4284 DoGet(_REMOTE, '/queries/%s/answers?expand&simplify' % study)) |
|
189
11719f19bd62
test_dicom_disk_size
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
188
diff
changeset
|
4285 |
|
188
7d585263808b
new test: test_queries_hierarchy
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
187
diff
changeset
|
4286 j = DoPost(_REMOTE, '/queries/%s/answers/0/query-series' % patient, |
|
7d585263808b
new test: test_queries_hierarchy
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
187
diff
changeset
|
4287 { 'Query' : tags }) ['ID'] |
|
7d585263808b
new test: test_queries_hierarchy
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
187
diff
changeset
|
4288 self.assertEqual(DoGet(_REMOTE, '/queries/%s/answers?expand&simplify' % j), |
|
7d585263808b
new test: test_queries_hierarchy
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
187
diff
changeset
|
4289 DoGet(_REMOTE, '/queries/%s/answers?expand&simplify' % series)) |
|
7d585263808b
new test: test_queries_hierarchy
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
187
diff
changeset
|
4290 |
|
7d585263808b
new test: test_queries_hierarchy
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
187
diff
changeset
|
4291 j = DoPost(_REMOTE, '/queries/%s/answers/0/query-instances' % patient, |
|
7d585263808b
new test: test_queries_hierarchy
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
187
diff
changeset
|
4292 { 'Query' : tags }) ['ID'] |
|
7d585263808b
new test: test_queries_hierarchy
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
187
diff
changeset
|
4293 self.assertEqual(DoGet(_REMOTE, '/queries/%s/answers?expand&simplify' % j), |
|
7d585263808b
new test: test_queries_hierarchy
Sebastien Jodogne <s.jodogne@gmail.com>
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diff
changeset
|
4294 DoGet(_REMOTE, '/queries/%s/answers?expand&simplify' % instance)) |
|
7d585263808b
new test: test_queries_hierarchy
Sebastien Jodogne <s.jodogne@gmail.com>
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187
diff
changeset
|
4295 |
|
7d585263808b
new test: test_queries_hierarchy
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
187
diff
changeset
|
4296 j = DoPost(_REMOTE, '/queries/%s/answers/0/query-series' % study, |
|
7d585263808b
new test: test_queries_hierarchy
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
changeset
|
4297 { 'Query' : tags }) ['ID'] |
|
7d585263808b
new test: test_queries_hierarchy
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
187
diff
changeset
|
4298 self.assertEqual(DoGet(_REMOTE, '/queries/%s/answers?expand&simplify' % j), |
|
7d585263808b
new test: test_queries_hierarchy
Sebastien Jodogne <s.jodogne@gmail.com>
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diff
changeset
|
4299 DoGet(_REMOTE, '/queries/%s/answers?expand&simplify' % series)) |
|
7d585263808b
new test: test_queries_hierarchy
Sebastien Jodogne <s.jodogne@gmail.com>
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diff
changeset
|
4300 |
|
7d585263808b
new test: test_queries_hierarchy
Sebastien Jodogne <s.jodogne@gmail.com>
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187
diff
changeset
|
4301 j = DoPost(_REMOTE, '/queries/%s/answers/0/query-instances' % study, |
|
7d585263808b
new test: test_queries_hierarchy
Sebastien Jodogne <s.jodogne@gmail.com>
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diff
changeset
|
4302 { 'Query' : tags }) ['ID'] |
|
7d585263808b
new test: test_queries_hierarchy
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
changeset
|
4303 self.assertEqual(DoGet(_REMOTE, '/queries/%s/answers?expand&simplify' % j), |
|
7d585263808b
new test: test_queries_hierarchy
Sebastien Jodogne <s.jodogne@gmail.com>
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diff
changeset
|
4304 DoGet(_REMOTE, '/queries/%s/answers?expand&simplify' % instance)) |
|
7d585263808b
new test: test_queries_hierarchy
Sebastien Jodogne <s.jodogne@gmail.com>
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diff
changeset
|
4305 |
|
7d585263808b
new test: test_queries_hierarchy
Sebastien Jodogne <s.jodogne@gmail.com>
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diff
changeset
|
4306 j = DoPost(_REMOTE, '/queries/%s/answers/0/query-instances' % series, |
|
7d585263808b
new test: test_queries_hierarchy
Sebastien Jodogne <s.jodogne@gmail.com>
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diff
changeset
|
4307 { 'Query' : tags }) ['ID'] |
|
7d585263808b
new test: test_queries_hierarchy
Sebastien Jodogne <s.jodogne@gmail.com>
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diff
changeset
|
4308 self.assertEqual(DoGet(_REMOTE, '/queries/%s/answers?expand&simplify' % j), |
|
7d585263808b
new test: test_queries_hierarchy
Sebastien Jodogne <s.jodogne@gmail.com>
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diff
changeset
|
4309 DoGet(_REMOTE, '/queries/%s/answers?expand&simplify' % instance)) |
|
7d585263808b
new test: test_queries_hierarchy
Sebastien Jodogne <s.jodogne@gmail.com>
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diff
changeset
|
4310 |
|
7d585263808b
new test: test_queries_hierarchy
Sebastien Jodogne <s.jodogne@gmail.com>
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187
diff
changeset
|
4311 |
|
189
11719f19bd62
test_dicom_disk_size
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diff
changeset
|
4312 def test_dicom_disk_size(self): |
|
11719f19bd62
test_dicom_disk_size
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diff
changeset
|
4313 dicomSize = 0 |
|
11719f19bd62
test_dicom_disk_size
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diff
changeset
|
4314 |
|
11719f19bd62
test_dicom_disk_size
Sebastien Jodogne <s.jodogne@gmail.com>
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188
diff
changeset
|
4315 UploadInstance(_REMOTE, 'Brainix/Flair/IM-0001-0001.dcm') |
|
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test_dicom_disk_size
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diff
changeset
|
4316 |
|
11719f19bd62
test_dicom_disk_size
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188
diff
changeset
|
4317 for i in range(2): |
|
11719f19bd62
test_dicom_disk_size
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diff
changeset
|
4318 p = 'Knee/T%d/IM-0001-0001.dcm' % (i + 1) |
|
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test_dicom_disk_size
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diff
changeset
|
4319 UploadInstance(_REMOTE, p) |
|
11719f19bd62
test_dicom_disk_size
Sebastien Jodogne <s.jodogne@gmail.com>
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diff
changeset
|
4320 dicomSize += os.path.getsize(GetDatabasePath(p)) |
|
11719f19bd62
test_dicom_disk_size
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
188
diff
changeset
|
4321 |
|
11719f19bd62
test_dicom_disk_size
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
188
diff
changeset
|
4322 s = DoGet(_REMOTE, '/patients/ca29faea-b6a0e17f-067743a1-8b778011-a48b2a17/statistics') # Consider Knee patient |
|
11719f19bd62
test_dicom_disk_size
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
188
diff
changeset
|
4323 self.assertEqual(2, s['CountInstances']) |
|
11719f19bd62
test_dicom_disk_size
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
188
diff
changeset
|
4324 self.assertEqual(2, s['CountSeries']) |
|
11719f19bd62
test_dicom_disk_size
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
188
diff
changeset
|
4325 self.assertEqual(1, s['CountStudies']) |
|
11719f19bd62
test_dicom_disk_size
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
188
diff
changeset
|
4326 self.assertEqual(dicomSize, int(s['DicomDiskSize'])) |
|
11719f19bd62
test_dicom_disk_size
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
188
diff
changeset
|
4327 self.assertEqual(dicomSize, int(s['DicomUncompressedSize'])) |
|
11719f19bd62
test_dicom_disk_size
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
188
diff
changeset
|
4328 self.assertLess(dicomSize, int(s['UncompressedSize'])) |
|
11719f19bd62
test_dicom_disk_size
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
188
diff
changeset
|
4329 self.assertEqual(s['UncompressedSize'], s['DiskSize']) |
|
11719f19bd62
test_dicom_disk_size
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
188
diff
changeset
|
4330 |
|
202
f26f9ae9c599
test_changes_2 and test_bitbucket_issue_124
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
195
diff
changeset
|
4331 |
|
f26f9ae9c599
test_changes_2 and test_bitbucket_issue_124
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
195
diff
changeset
|
4332 def test_changes_2(self): |
|
f26f9ae9c599
test_changes_2 and test_bitbucket_issue_124
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
195
diff
changeset
|
4333 # More consistent behavior since Orthanc 1.5.2 |
|
f26f9ae9c599
test_changes_2 and test_bitbucket_issue_124
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
195
diff
changeset
|
4334 # https://groups.google.com/d/msg/orthanc-users/QhzB6vxYeZ0/YxabgqpfBAAJ |
|
f26f9ae9c599
test_changes_2 and test_bitbucket_issue_124
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
195
diff
changeset
|
4335 |
|
f26f9ae9c599
test_changes_2 and test_bitbucket_issue_124
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
195
diff
changeset
|
4336 # Make sure that this is not the first change |
|
f26f9ae9c599
test_changes_2 and test_bitbucket_issue_124
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
195
diff
changeset
|
4337 self.assertEqual(0, len(DoGet(_REMOTE, '/instances'))) |
|
f26f9ae9c599
test_changes_2 and test_bitbucket_issue_124
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
195
diff
changeset
|
4338 a = UploadInstance(_REMOTE, 'DummyCT.dcm')['ID'] |
|
f26f9ae9c599
test_changes_2 and test_bitbucket_issue_124
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
195
diff
changeset
|
4339 self.assertEqual(1, len(DoGet(_REMOTE, '/instances'))) |
|
f26f9ae9c599
test_changes_2 and test_bitbucket_issue_124
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
195
diff
changeset
|
4340 DoDelete(_REMOTE, '/instances/%s' % a) |
|
f26f9ae9c599
test_changes_2 and test_bitbucket_issue_124
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
195
diff
changeset
|
4341 |
|
f26f9ae9c599
test_changes_2 and test_bitbucket_issue_124
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
195
diff
changeset
|
4342 # No more instance, but there were previous changes |
|
f26f9ae9c599
test_changes_2 and test_bitbucket_issue_124
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
195
diff
changeset
|
4343 self.assertEqual(0, len(DoGet(_REMOTE, '/instances'))) |
|
f26f9ae9c599
test_changes_2 and test_bitbucket_issue_124
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
195
diff
changeset
|
4344 |
|
f26f9ae9c599
test_changes_2 and test_bitbucket_issue_124
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
195
diff
changeset
|
4345 c = DoGet(_REMOTE, '/changes') |
|
f26f9ae9c599
test_changes_2 and test_bitbucket_issue_124
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
195
diff
changeset
|
4346 self.assertEqual(0, len(c['Changes'])) |
|
f26f9ae9c599
test_changes_2 and test_bitbucket_issue_124
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
195
diff
changeset
|
4347 self.assertTrue(c['Done']) |
|
f26f9ae9c599
test_changes_2 and test_bitbucket_issue_124
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
195
diff
changeset
|
4348 seq = c['Last'] |
|
f26f9ae9c599
test_changes_2 and test_bitbucket_issue_124
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
195
diff
changeset
|
4349 |
|
f26f9ae9c599
test_changes_2 and test_bitbucket_issue_124
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
195
diff
changeset
|
4350 c = DoGet(_REMOTE, '/changes?last') |
|
f26f9ae9c599
test_changes_2 and test_bitbucket_issue_124
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
195
diff
changeset
|
4351 self.assertEqual(0, len(c['Changes'])) |
|
f26f9ae9c599
test_changes_2 and test_bitbucket_issue_124
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
195
diff
changeset
|
4352 self.assertTrue(c['Done']) |
|
f26f9ae9c599
test_changes_2 and test_bitbucket_issue_124
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
195
diff
changeset
|
4353 self.assertEqual(seq, c['Last']) |
|
f26f9ae9c599
test_changes_2 and test_bitbucket_issue_124
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
195
diff
changeset
|
4354 |
|
f26f9ae9c599
test_changes_2 and test_bitbucket_issue_124
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
195
diff
changeset
|
4355 c = DoGet(_REMOTE, '/changes?since=%d' % (seq + 1000)) |
|
f26f9ae9c599
test_changes_2 and test_bitbucket_issue_124
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
195
diff
changeset
|
4356 self.assertEqual(0, len(c['Changes'])) |
|
f26f9ae9c599
test_changes_2 and test_bitbucket_issue_124
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
195
diff
changeset
|
4357 self.assertTrue(c['Done']) |
|
f26f9ae9c599
test_changes_2 and test_bitbucket_issue_124
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
195
diff
changeset
|
4358 self.assertEqual(seq, c['Last']) |
|
f26f9ae9c599
test_changes_2 and test_bitbucket_issue_124
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
195
diff
changeset
|
4359 |
|
f26f9ae9c599
test_changes_2 and test_bitbucket_issue_124
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
195
diff
changeset
|
4360 # Add one instance |
|
f26f9ae9c599
test_changes_2 and test_bitbucket_issue_124
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
195
diff
changeset
|
4361 UploadInstance(_REMOTE, 'DummyCT.dcm') |
|
f26f9ae9c599
test_changes_2 and test_bitbucket_issue_124
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
195
diff
changeset
|
4362 self.assertEqual(1, len(DoGet(_REMOTE, '/instances'))) |
|
f26f9ae9c599
test_changes_2 and test_bitbucket_issue_124
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
195
diff
changeset
|
4363 |
|
f26f9ae9c599
test_changes_2 and test_bitbucket_issue_124
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
195
diff
changeset
|
4364 c = DoGet(_REMOTE, '/changes') |
|
f26f9ae9c599
test_changes_2 and test_bitbucket_issue_124
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
195
diff
changeset
|
4365 self.assertEqual(4, len(c['Changes'])) |
|
f26f9ae9c599
test_changes_2 and test_bitbucket_issue_124
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
195
diff
changeset
|
4366 self.assertTrue(c['Done']) |
|
f26f9ae9c599
test_changes_2 and test_bitbucket_issue_124
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
195
diff
changeset
|
4367 self.assertEqual(seq + 4, c['Last']) |
|
f26f9ae9c599
test_changes_2 and test_bitbucket_issue_124
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
195
diff
changeset
|
4368 |
|
f26f9ae9c599
test_changes_2 and test_bitbucket_issue_124
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
195
diff
changeset
|
4369 c = DoGet(_REMOTE, '/changes?last') |
|
f26f9ae9c599
test_changes_2 and test_bitbucket_issue_124
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
195
diff
changeset
|
4370 self.assertEqual(1, len(c['Changes'])) |
|
f26f9ae9c599
test_changes_2 and test_bitbucket_issue_124
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
195
diff
changeset
|
4371 self.assertTrue(c['Done']) |
|
f26f9ae9c599
test_changes_2 and test_bitbucket_issue_124
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
195
diff
changeset
|
4372 self.assertEqual(seq + 4, c['Last']) |
|
f26f9ae9c599
test_changes_2 and test_bitbucket_issue_124
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
195
diff
changeset
|
4373 |
|
f26f9ae9c599
test_changes_2 and test_bitbucket_issue_124
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
195
diff
changeset
|
4374 c = DoGet(_REMOTE, '/changes?since=%d' % (seq + 1000)) |
|
f26f9ae9c599
test_changes_2 and test_bitbucket_issue_124
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
195
diff
changeset
|
4375 self.assertEqual(0, len(c['Changes'])) |
|
f26f9ae9c599
test_changes_2 and test_bitbucket_issue_124
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
195
diff
changeset
|
4376 self.assertTrue(c['Done']) |
|
f26f9ae9c599
test_changes_2 and test_bitbucket_issue_124
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
195
diff
changeset
|
4377 self.assertEqual(seq + 4, c['Last']) |
|
f26f9ae9c599
test_changes_2 and test_bitbucket_issue_124
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
195
diff
changeset
|
4378 |
|
f26f9ae9c599
test_changes_2 and test_bitbucket_issue_124
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
195
diff
changeset
|
4379 # Remove the uploaded instance |
|
f26f9ae9c599
test_changes_2 and test_bitbucket_issue_124
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
195
diff
changeset
|
4380 DoDelete(_REMOTE, '/instances/%s' % a) |
|
f26f9ae9c599
test_changes_2 and test_bitbucket_issue_124
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
195
diff
changeset
|
4381 self.assertEqual(0, len(DoGet(_REMOTE, '/instances'))) |
|
f26f9ae9c599
test_changes_2 and test_bitbucket_issue_124
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
195
diff
changeset
|
4382 |
|
f26f9ae9c599
test_changes_2 and test_bitbucket_issue_124
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
195
diff
changeset
|
4383 c = DoGet(_REMOTE, '/changes') |
|
f26f9ae9c599
test_changes_2 and test_bitbucket_issue_124
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
195
diff
changeset
|
4384 self.assertEqual(0, len(c['Changes'])) |
|
f26f9ae9c599
test_changes_2 and test_bitbucket_issue_124
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
195
diff
changeset
|
4385 self.assertTrue(c['Done']) |
|
f26f9ae9c599
test_changes_2 and test_bitbucket_issue_124
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
195
diff
changeset
|
4386 self.assertEqual(seq + 4, c['Last']) |
|
f26f9ae9c599
test_changes_2 and test_bitbucket_issue_124
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
195
diff
changeset
|
4387 |
|
f26f9ae9c599
test_changes_2 and test_bitbucket_issue_124
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
195
diff
changeset
|
4388 c = DoGet(_REMOTE, '/changes?last') |
|
f26f9ae9c599
test_changes_2 and test_bitbucket_issue_124
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
195
diff
changeset
|
4389 self.assertEqual(0, len(c['Changes'])) |
|
f26f9ae9c599
test_changes_2 and test_bitbucket_issue_124
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
195
diff
changeset
|
4390 self.assertTrue(c['Done']) |
|
f26f9ae9c599
test_changes_2 and test_bitbucket_issue_124
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
195
diff
changeset
|
4391 self.assertEqual(seq + 4, c['Last']) |
|
f26f9ae9c599
test_changes_2 and test_bitbucket_issue_124
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
195
diff
changeset
|
4392 |
|
f26f9ae9c599
test_changes_2 and test_bitbucket_issue_124
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
195
diff
changeset
|
4393 c = DoGet(_REMOTE, '/changes?since=%d' % (seq + 1000)) |
|
f26f9ae9c599
test_changes_2 and test_bitbucket_issue_124
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
195
diff
changeset
|
4394 self.assertEqual(0, len(c['Changes'])) |
|
f26f9ae9c599
test_changes_2 and test_bitbucket_issue_124
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
195
diff
changeset
|
4395 self.assertTrue(c['Done']) |
|
f26f9ae9c599
test_changes_2 and test_bitbucket_issue_124
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
195
diff
changeset
|
4396 self.assertEqual(seq + 4, c['Last']) |
|
f26f9ae9c599
test_changes_2 and test_bitbucket_issue_124
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
195
diff
changeset
|
4397 |
|
f26f9ae9c599
test_changes_2 and test_bitbucket_issue_124
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
195
diff
changeset
|
4398 |
|
f26f9ae9c599
test_changes_2 and test_bitbucket_issue_124
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
195
diff
changeset
|
4399 def test_bitbucket_issue_124(self): |
|
f26f9ae9c599
test_changes_2 and test_bitbucket_issue_124
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
195
diff
changeset
|
4400 a = UploadInstance(_REMOTE, 'Issue124.dcm')['ID'] |
|
f26f9ae9c599
test_changes_2 and test_bitbucket_issue_124
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
195
diff
changeset
|
4401 |
|
f26f9ae9c599
test_changes_2 and test_bitbucket_issue_124
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
195
diff
changeset
|
4402 z = GetArchive(_REMOTE, '/patients/%s/media' % a) |
|
f26f9ae9c599
test_changes_2 and test_bitbucket_issue_124
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
195
diff
changeset
|
4403 self.assertEqual(2, len(z.namelist())) |
|
207
a515eec74078
test_invalid_findscp
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
202
diff
changeset
|
4404 |
|
a515eec74078
test_invalid_findscp
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
202
diff
changeset
|
4405 |
|
a515eec74078
test_invalid_findscp
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
202
diff
changeset
|
4406 def test_invalid_findscp(self): |
|
a515eec74078
test_invalid_findscp
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
202
diff
changeset
|
4407 UploadInstance(_REMOTE, 'DummyCT.dcm') |
|
a515eec74078
test_invalid_findscp
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
202
diff
changeset
|
4408 findscu = CallFindScu([ '-S', '-k', '8,52=IMAGE', '-k', '8,16', '-k', '2,2' ]) |
|
a515eec74078
test_invalid_findscp
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
202
diff
changeset
|
4409 self.assertEqual(0, len(re.findall('\(0002,0002\)', findscu))) |
|
208
2444c9a7c422
test_bitbucket_issue_90
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
207
diff
changeset
|
4410 |
|
2444c9a7c422
test_bitbucket_issue_90
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
207
diff
changeset
|
4411 |
|
2444c9a7c422
test_bitbucket_issue_90
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
207
diff
changeset
|
4412 def test_bitbucket_issue_90(self): |
|
2444c9a7c422
test_bitbucket_issue_90
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
207
diff
changeset
|
4413 def CountDicomResults(sex): |
|
2444c9a7c422
test_bitbucket_issue_90
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
207
diff
changeset
|
4414 a = CallFindScu([ '-S', '-k', '8,52=STUDY', '-k', sex ]) |
|
2444c9a7c422
test_bitbucket_issue_90
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
207
diff
changeset
|
4415 return len(re.findall('\(0010,0040\)', a)) |
|
2444c9a7c422
test_bitbucket_issue_90
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
207
diff
changeset
|
4416 |
|
2444c9a7c422
test_bitbucket_issue_90
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
207
diff
changeset
|
4417 def CountRestResults(sex): |
|
2444c9a7c422
test_bitbucket_issue_90
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
207
diff
changeset
|
4418 a = DoPost(_REMOTE, '/tools/find', |
|
2444c9a7c422
test_bitbucket_issue_90
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
207
diff
changeset
|
4419 { 'Level' : 'Study', 'Query' : { 'PatientSex' : sex } }) |
|
2444c9a7c422
test_bitbucket_issue_90
Sebastien Jodogne <s.jodogne@gmail.com>
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4420 return len(a) |
|
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4421 |
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4422 # Just like the "CR000000.dcm" of the issue, the test image |
|
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4423 # "DummyCT.dcm" has the tag PatientSex (0010,0040) unset |
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4424 UploadInstance(_REMOTE, 'DummyCT.dcm') |
|
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4425 |
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4426 # Test that the behavior of DICOM vs. REST API is consistent on missing tags |
|
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4427 |
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4428 # In wildcard constraints, the patient sex must be set for a match to occur |
|
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4429 self.assertEqual(0, CountDicomResults('PatientSex=*')) |
|
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4430 self.assertEqual(0, CountRestResults('*')) |
|
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4431 |
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4432 # In single-valued constraints, the patient sex must be set |
|
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4433 self.assertEqual(0, CountDicomResults('PatientSex=F')) |
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4434 self.assertEqual(0, CountDicomResults('PatientSex=M')) |
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4435 self.assertEqual(0, CountRestResults('F')) |
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4436 self.assertEqual(0, CountRestResults('M')) |
|
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4437 |
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4438 # Empty constraints are only used to ask the actual value of |
|
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4439 # the tag to be added to the *answer*. The tag should not used |
|
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4440 # as a filter in such a situation. |
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4441 self.assertEqual(1, CountDicomResults('PatientSex')) |
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4442 self.assertEqual(1, CountDicomResults('PatientSex=')) |
|
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4443 self.assertEqual(1, CountRestResults('')) # This check fails on Orthanc <= 1.5.2 (issue 90) |
|
210
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4444 |
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4445 |
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4446 def test_rest_modalities_in_study(self): |
|
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4447 # Tests a regression that is present in Orthanc 1.5.2 and 1.5.3 |
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4448 # https://groups.google.com/d/msg/orthanc-users/7lZyG3wpx-M/uOXzAzVCFwAJ |
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4449 UploadInstance(_REMOTE, 'ColorTestImageJ.dcm') |
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4450 |
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4451 a = DoPost(_REMOTE, '/tools/find', { 'Level' : 'Study', |
|
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4452 'Query' : { 'ModalitiesInStudy' : 'US' }}) |
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4453 self.assertEqual(0, len(a)) |
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4454 |
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4455 a = DoPost(_REMOTE, '/tools/find', { 'Level' : 'Study', |
|
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4456 'Query' : { 'ModalitiesInStudy' : 'US\\CT' }}) |
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4457 self.assertEqual(1, len(a)) |
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4458 |
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4459 a = DoPost(_REMOTE, '/tools/find', { 'Level' : 'Study', |
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4460 'Query' : { 'ModalitiesInStudy' : 'CT' }}) |
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4461 self.assertEqual(1, len(a)) |
| 211 | 4462 |
| 4463 | |
| 4464 def test_series_status(self): | |
| 4465 def HasCompletedInChanges(): | |
| 4466 for c in DoGet(_REMOTE, '/changes?limit=1000&since=0')['Changes']: | |
| 4467 if c['ChangeType'] == 'CompletedSeries': | |
| 4468 return True; | |
| 4469 | |
| 4470 return False | |
| 4471 | |
| 4472 UploadInstance(_REMOTE, 'Knix/Loc/IM-0001-0001.dcm') | |
| 4473 series = '8ea120d7-5057d919-837dfbcc-ccd04e0f-7f3a94aa' | |
| 4474 self.assertEqual('Unknown', DoGet(_REMOTE, '/series/%s' % series)['Status']) | |
| 4475 self.assertFalse(HasCompletedInChanges()) | |
| 4476 | |
| 4477 series = 'ce25ecb6-ed79d004-5ae43ca7-3fc89bc5-67511614' | |
| 4478 | |
| 4479 for i in range(3): | |
| 4480 UploadInstance(_REMOTE, 'Series/Lena-%d.dcm' % (i + 1)) | |
| 4481 self.assertEqual('Missing', DoGet(_REMOTE, '/series/%s' % series)['Status']) | |
| 4482 self.assertFalse(HasCompletedInChanges()) | |
| 4483 | |
| 4484 UploadInstance(_REMOTE, 'Series/Lena-4.dcm') | |
| 4485 self.assertEqual('Complete', DoGet(_REMOTE, '/series/%s' % series)['Status']) | |
| 4486 self.assertTrue(HasCompletedInChanges()) | |
| 4487 | |
| 4488 DoDelete(_REMOTE, '/changes') | |
| 4489 self.assertFalse(HasCompletedInChanges()) | |
| 4490 | |
| 4491 UploadInstance(_REMOTE, 'Series/Lena-5.dcm') | |
| 4492 self.assertEqual('Inconsistent', DoGet(_REMOTE, '/series/%s' % series)['Status']) | |
| 4493 self.assertFalse(HasCompletedInChanges()) | |
| 4494 | |
| 215 | 4495 |
| 4496 def test_dicomweb(self): | |
| 4497 def Compare(dicom, reference): | |
| 4498 a = UploadInstance(_REMOTE, dicom) ['ID'] | |
| 4499 b = DoGet(_REMOTE, '/instances/%s/file' % a, | |
| 4500 headers = { 'Accept' : 'application/dicom+json' }) | |
| 4501 with open(GetDatabasePath(reference), 'rb') as c: | |
| 4502 d = json.load(c) | |
| 220 | 4503 AssertAlmostEqualRecursive(self, d, b) |
| 215 | 4504 |
| 4505 Compare('DummyCT.dcm', 'DummyCT.json') | |
| 4506 Compare('MarekLatin2.dcm', 'MarekLatin2.json') | |
| 4507 Compare('HierarchicalAnonymization/StructuredReports/IM0', | |
| 4508 'HierarchicalAnonymization/StructuredReports/IM0.json') | |
| 217 | 4509 |
| 4510 | |
| 4511 def test_issue_95_encodings(self): | |
| 319 | 4512 # https://bugs.orthanc-server.com/show_bug.cgi?id=95 |
| 217 | 4513 # Check out image: "../Database/Encodings/DavidClunie/charsettests.screenshot.png" |
| 4514 | |
| 4515 # Very useful tool: "file2" from package "file-kanji" | |
| 4516 | |
| 4517 def GetPatientName(dicom): | |
| 4518 i = UploadInstance(_REMOTE, dicom) ['ID'] | |
| 4519 j = DoGet(_REMOTE, '/instances/%s/tags?simplify' % i) | |
| 4520 return j['PatientName'] | |
| 4521 | |
| 4522 def ComparePatientName(name, dicom): | |
| 4523 self.assertEqual(name, GetPatientName(dicom)) | |
| 4524 | |
| 4525 # gdcmraw -t 10,10 -i SCSFREN -o /tmp/tag && uconv -f ISO-IR-100 -t UTF-8 /tmp/tag && echo | |
| 4526 ComparePatientName(u'Buc^Jérôme', 'Encodings/DavidClunie/SCSFREN') | |
| 4527 | |
| 4528 # gdcmraw -t 10,10 -i SCSI2 -o /tmp/tag && uconv -f KOREAN -t UTF-8 /tmp/tag && echo | |
| 4529 ComparePatientName(u'Hong^Gildong=洪^吉洞=홍^길동', 'Encodings/DavidClunie/SCSI2') # Since Orthanc 1.5.5 | |
| 4530 | |
| 4531 # gdcmraw -t 10,10 -i SCSX2 -o /tmp/tag && uconv -f GB18030 -t UTF-8 /tmp/tag && echo | |
| 4532 ComparePatientName(u'Wang^XiaoDong=王^小东=', 'Encodings/DavidClunie/SCSX2') | |
| 4533 | |
| 4534 # gdcmraw -t 10,10 -i SCSX1 -o /tmp/tag && cat /tmp/tag && echo | |
| 4535 ComparePatientName(u'Wang^XiaoDong=王^小東=', 'Encodings/DavidClunie/SCSX1') | |
| 4536 | |
| 4537 # gdcmraw -t 10,10 -i SCSH31 -o /tmp/tag && uconv -f JIS -t UTF-8 /tmp/tag && echo | |
| 4538 ComparePatientName(u'Yamada^Tarou=山田^太郎=やまだ^たろう', 'Encodings/DavidClunie/SCSH31') | |
| 4539 | |
| 4540 # gdcmraw -t 10,10 -i SCSGERM -o /tmp/tag && uconv -f ISO-IR-100 -t UTF-8 /tmp/tag && echo | |
| 4541 ComparePatientName(u'Äneas^Rüdiger', 'Encodings/DavidClunie/SCSGERM') | |
| 4542 | |
| 4543 # gdcmraw -t 10,10 -i SCSGREEK -o /tmp/tag && uconv -f ISO-IR-126 -t UTF-8 /tmp/tag && echo | |
| 4544 ComparePatientName(u'Διονυσιος', 'Encodings/DavidClunie/SCSGREEK') | |
| 4545 | |
| 4546 # gdcmraw -t 10,10 -i SCSRUSS -o /tmp/tag && uconv -f ISO-IR-144 -t UTF-8 /tmp/tag && echo | |
| 4547 ComparePatientName(u'Люкceмбypг', 'Encodings/DavidClunie/SCSRUSS') | |
| 4548 | |
| 4549 # gdcmraw -t 10,10 -i SCSHBRW -o /tmp/tag && uconv -f ISO-IR-138 -t UTF-8 /tmp/tag && echo | |
| 4550 # NB: Hebrew is a right-to-left encoding, copying/pasting from | |
| 4551 # Linux console into Emacs automatically reverse the string | |
| 4552 ComparePatientName(u'שרון^דבורה', 'Encodings/DavidClunie/SCSHBRW') | |
| 4553 | |
| 4554 # gdcmraw -t 10,10 -i SCSARAB -o /tmp/tag && uconv -f ISO-IR-127 -t UTF-8 /tmp/tag && echo | |
| 4555 # NB: Right-to-left as for Hebrew (SCSHBRW), and the Ubuntu console can't display such | |
| 4556 # characters by default, but copy/paste works with Emacs | |
| 4557 ComparePatientName(u'قباني^لنزار', 'Encodings/DavidClunie/SCSARAB') | |
| 4558 | |
| 4559 # SCSH32: This SpecificCharacterSet is composed of 2 | |
| 4560 # codepages: "ISO 2022 IR 13" (i.e. "SHIFT_JIS") until the | |
| 4561 # first equal, then "ISO 2022 IR 87" (i.e. "JIS") for the | |
| 4562 # remainer. Orthanc only takes into consideration the first | |
| 4563 # codepage: This is a limitation. | |
| 4564 # gdcmraw -t 10,10 -i SCSH32 -o /tmp/tag && cut -d '=' -f 1 /tmp/tag | uconv -f SHIFT_JIS -t UTF-8 | |
| 4565 self.assertTrue(GetPatientName('Encodings/DavidClunie/SCSH32').startswith(u'ﾔﾏﾀﾞ^ﾀﾛｳ=')) | |
|
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4566 |
|
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|
4567 |
|
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diff
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|
4568 def test_findscu_missing_tags(self): |
|
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diff
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|
4569 # dcmodify -e Rows DummyCTInvalidRows.dcm -gst -gse -gin |
|
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|
4570 UploadInstance(_REMOTE, 'DummyCT.dcm') |
|
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diff
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|
4571 UploadInstance(_REMOTE, 'DummyCTInvalidRows.dcm') |
|
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|
4572 |
|
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diff
changeset
|
4573 i = CallFindScu([ '-k', '0008,0052=IMAGES', '-k', 'Rows', '-k', 'PatientName' ]) |
|
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4574 |
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|
4575 # We have 2 instances... |
|
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|
4576 patientNames = re.findall('\(0010,0010\).*?\[(.*?)\]', i) |
|
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|
4577 self.assertEqual(2, len(patientNames)) |
|
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|
4578 self.assertEqual('KNIX', patientNames[0]) |
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4579 self.assertEqual('KNIX', patientNames[1]) |
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|
4580 |
|
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diff
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|
4581 # ...but only 1 value for the "Rows" tag |
|
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|
4582 rows = re.findall('\(0028,0010\) US ([0-9]+)', i) |
|
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|
4583 self.assertEqual(1, len(rows)) |
|
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|
4584 self.assertEqual('512', rows[0]) |
|
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4585 |
|
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4586 |
|
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4587 |
|
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|
4588 def test_bitbucket_issue_131(self): |
|
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|
4589 # "Orthanc PACS silently fails to C-MOVE due to duplicate |
|
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|
4590 # StudyInstanceUID in it's database." |
| 319 | 4591 # https://bugs.orthanc-server.com/show_bug.cgi?id=131 |
|
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4592 |
|
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diff
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|
4593 # Insert 2 instances, with the same StudyInstanceUID, but with |
|
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4594 # different patient IDs. Orthanc will create 2 distincts |
|
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4595 # patients, and the hierarchy of resources above the two |
|
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4596 # instances will be fully disjoint. |
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changeset
|
4597 UploadInstance(_REMOTE, 'PatientIdsCollision/Issue131-a.dcm') |
|
00e5aeea33dd
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diff
changeset
|
4598 UploadInstance(_REMOTE, 'PatientIdsCollision/Issue131-b.dcm') |
|
00e5aeea33dd
test_bitbucket_issue_131
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218
diff
changeset
|
4599 |
|
00e5aeea33dd
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diff
changeset
|
4600 self.assertEqual(2, len(DoGet(_REMOTE, '/patients'))) |
|
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diff
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|
4601 self.assertEqual(2, len(DoGet(_REMOTE, '/studies'))) |
|
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218
diff
changeset
|
4602 |
|
00e5aeea33dd
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218
diff
changeset
|
4603 a = DoPost(_REMOTE, '/modalities/self/query', { |
|
00e5aeea33dd
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218
diff
changeset
|
4604 'Level' : 'Study', |
|
00e5aeea33dd
test_bitbucket_issue_131
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218
diff
changeset
|
4605 'Query' : {"PatientID": "A" }})['ID'] |
|
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test_bitbucket_issue_131
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218
diff
changeset
|
4606 |
|
00e5aeea33dd
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diff
changeset
|
4607 # 1 study is matched |
|
00e5aeea33dd
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diff
changeset
|
4608 self.assertEqual(1, len(DoGet(_REMOTE, '/queries/%s/answers' % a))) |
|
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test_bitbucket_issue_131
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218
diff
changeset
|
4609 |
|
00e5aeea33dd
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parents:
218
diff
changeset
|
4610 self.assertEqual(0, len(DoGet(_LOCAL, '/instances'))) |
| 220 | 4611 WaitAllNewJobsDone(_REMOTE, lambda: DoPost |
| 4612 (_REMOTE, '/queries/%s/retrieve' % a, | |
| 4613 '{"TargetAet":"ORTHANCTEST","Synchronous":false}')) | |
|
219
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parents:
218
diff
changeset
|
4614 |
|
00e5aeea33dd
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218
diff
changeset
|
4615 # The two studies are matched, as we made the request at the |
|
00e5aeea33dd
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218
diff
changeset
|
4616 # Study level, thus the shared StudyInstanceUID is used as the key |
|
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diff
changeset
|
4617 self.assertEqual(2, len(DoGet(_LOCAL, '/instances'))) |
|
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parents:
218
diff
changeset
|
4618 |
|
00e5aeea33dd
test_bitbucket_issue_131
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parents:
218
diff
changeset
|
4619 |
|
00e5aeea33dd
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218
diff
changeset
|
4620 # Match the 2 studies |
|
00e5aeea33dd
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218
diff
changeset
|
4621 a = DoPost(_REMOTE, '/modalities/self/query', { |
|
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parents:
218
diff
changeset
|
4622 'Level' : 'Study', |
|
00e5aeea33dd
test_bitbucket_issue_131
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parents:
218
diff
changeset
|
4623 'Query' : {"StudyInstanceUID": "2.25.123" }})['ID'] |
|
00e5aeea33dd
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218
diff
changeset
|
4624 self.assertEqual(2, len(DoGet(_REMOTE, '/queries/%s/answers' % a))) |
|
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test_bitbucket_issue_131
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parents:
218
diff
changeset
|
4625 DropOrthanc(_LOCAL) |
|
00e5aeea33dd
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parents:
218
diff
changeset
|
4626 self.assertEqual(0, len(DoGet(_LOCAL, '/instances'))) |
| 220 | 4627 WaitAllNewJobsDone(_REMOTE, lambda: DoPost |
| 4628 (_REMOTE, '/queries/%s/retrieve' % a, | |
| 4629 '{"TargetAet":"ORTHANCTEST","Synchronous":false}')) | |
|
219
00e5aeea33dd
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Sebastien Jodogne <s.jodogne@gmail.com>
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218
diff
changeset
|
4630 self.assertEqual(2, len(DoGet(_LOCAL, '/instances'))) |
|
00e5aeea33dd
test_bitbucket_issue_131
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parents:
218
diff
changeset
|
4631 |
|
00e5aeea33dd
test_bitbucket_issue_131
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
218
diff
changeset
|
4632 |
|
00e5aeea33dd
test_bitbucket_issue_131
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parents:
218
diff
changeset
|
4633 # Same test, at the patient level => only 1 instance is transfered |
|
00e5aeea33dd
test_bitbucket_issue_131
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parents:
218
diff
changeset
|
4634 a = DoPost(_REMOTE, '/modalities/self/query', { |
|
00e5aeea33dd
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parents:
218
diff
changeset
|
4635 'Level' : 'Patient', |
|
00e5aeea33dd
test_bitbucket_issue_131
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parents:
218
diff
changeset
|
4636 'Query' : {"PatientID": "A" }})['ID'] |
|
00e5aeea33dd
test_bitbucket_issue_131
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
218
diff
changeset
|
4637 self.assertEqual(1, len(DoGet(_REMOTE, '/queries/%s/answers' % a))) |
|
00e5aeea33dd
test_bitbucket_issue_131
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
218
diff
changeset
|
4638 DropOrthanc(_LOCAL) |
|
00e5aeea33dd
test_bitbucket_issue_131
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
218
diff
changeset
|
4639 self.assertEqual(0, len(DoGet(_LOCAL, '/instances'))) |
| 220 | 4640 WaitAllNewJobsDone(_REMOTE, lambda: DoPost |
| 4641 (_REMOTE, '/queries/%s/retrieve' % a, | |
| 4642 '{"TargetAet":"ORTHANCTEST","Synchronous":false}')) | |
|
219
00e5aeea33dd
test_bitbucket_issue_131
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
218
diff
changeset
|
4643 self.assertEqual(1, len(DoGet(_LOCAL, '/instances'))) |
|
00e5aeea33dd
test_bitbucket_issue_131
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
218
diff
changeset
|
4644 |
|
00e5aeea33dd
test_bitbucket_issue_131
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
218
diff
changeset
|
4645 |
|
00e5aeea33dd
test_bitbucket_issue_131
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
218
diff
changeset
|
4646 # Same test, at the series level => only 1 instance is transfered |
|
00e5aeea33dd
test_bitbucket_issue_131
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
218
diff
changeset
|
4647 a = DoPost(_REMOTE, '/modalities/self/query', { |
|
00e5aeea33dd
test_bitbucket_issue_131
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
218
diff
changeset
|
4648 'Level' : 'Series', |
|
00e5aeea33dd
test_bitbucket_issue_131
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
218
diff
changeset
|
4649 'Query' : {"PatientID": "A" }})['ID'] |
|
00e5aeea33dd
test_bitbucket_issue_131
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
218
diff
changeset
|
4650 self.assertEqual(1, len(DoGet(_REMOTE, '/queries/%s/answers' % a))) |
|
00e5aeea33dd
test_bitbucket_issue_131
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
218
diff
changeset
|
4651 DropOrthanc(_LOCAL) |
|
00e5aeea33dd
test_bitbucket_issue_131
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
218
diff
changeset
|
4652 self.assertEqual(0, len(DoGet(_LOCAL, '/instances'))) |
| 220 | 4653 WaitAllNewJobsDone(_REMOTE, lambda: DoPost |
| 4654 (_REMOTE, '/queries/%s/retrieve' % a, | |
| 4655 '{"TargetAet":"ORTHANCTEST","Synchronous":false}')) | |
|
219
00e5aeea33dd
test_bitbucket_issue_131
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
218
diff
changeset
|
4656 self.assertEqual(1, len(DoGet(_LOCAL, '/instances'))) |
|
00e5aeea33dd
test_bitbucket_issue_131
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
218
diff
changeset
|
4657 |
|
233
ce0b19a2c807
test_bitbucket_issue_136
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
231
diff
changeset
|
4658 |
|
ce0b19a2c807
test_bitbucket_issue_136
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
231
diff
changeset
|
4659 def test_bitbucket_issue_136(self): |
|
ce0b19a2c807
test_bitbucket_issue_136
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
231
diff
changeset
|
4660 UploadInstance(_REMOTE, 'Issue137.dcm') |
|
ce0b19a2c807
test_bitbucket_issue_136
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
231
diff
changeset
|
4661 i = CallFindScu([ '-k', '0008,0052=STUDY', '-k', '0010,0010', '-k', '0028,0010', '-k', '0040,0275' ]) |
|
ce0b19a2c807
test_bitbucket_issue_136
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
231
diff
changeset
|
4662 patientNames = re.findall('\(0010,0010\).*?\[(.*?)\]', i) |
|
ce0b19a2c807
test_bitbucket_issue_136
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
231
diff
changeset
|
4663 self.assertEqual(1, len(patientNames)) |
|
ce0b19a2c807
test_bitbucket_issue_136
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
231
diff
changeset
|
4664 self.assertEqual('John Doe', patientNames[0]) |
|
234
93cd4fdd4a67
test_anonymize_relationships_4
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
233
diff
changeset
|
4665 |
|
93cd4fdd4a67
test_anonymize_relationships_4
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
233
diff
changeset
|
4666 |
|
93cd4fdd4a67
test_anonymize_relationships_4
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
233
diff
changeset
|
4667 def test_anonymize_relationships_4(self): |
|
93cd4fdd4a67
test_anonymize_relationships_4
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
233
diff
changeset
|
4668 # https://groups.google.com/d/msg/orthanc-users/UkcsqyTpszE/bXUpzU0vAAAJ |
|
93cd4fdd4a67
test_anonymize_relationships_4
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
233
diff
changeset
|
4669 sr1 = UploadInstance(_REMOTE, 'HierarchicalAnonymization/2019-03-28/CR000000.dcm')['ID'] |
|
93cd4fdd4a67
test_anonymize_relationships_4
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
233
diff
changeset
|
4670 mr1 = UploadInstance(_REMOTE, 'HierarchicalAnonymization/2019-03-28/PR000000.dcm')['ID'] |
|
93cd4fdd4a67
test_anonymize_relationships_4
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
233
diff
changeset
|
4671 study = '0c923249-d52121a9-2b7167f7-6b85534f-0943697e' |
|
93cd4fdd4a67
test_anonymize_relationships_4
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
233
diff
changeset
|
4672 |
|
93cd4fdd4a67
test_anonymize_relationships_4
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
233
diff
changeset
|
4673 anonymized = DoPost(_REMOTE, '/studies/%s/anonymize' % study, '{}', |
|
93cd4fdd4a67
test_anonymize_relationships_4
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
233
diff
changeset
|
4674 'application/json')['ID'] |
|
93cd4fdd4a67
test_anonymize_relationships_4
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
233
diff
changeset
|
4675 series = DoGet(_REMOTE, '/studies/%s/series' % anonymized) |
|
93cd4fdd4a67
test_anonymize_relationships_4
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
233
diff
changeset
|
4676 self.assertEqual(2, len(series)) |
|
93cd4fdd4a67
test_anonymize_relationships_4
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
233
diff
changeset
|
4677 |
|
93cd4fdd4a67
test_anonymize_relationships_4
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
233
diff
changeset
|
4678 cr = list(filter(lambda x: x['MainDicomTags']['Modality'] == 'CR', series)) |
|
93cd4fdd4a67
test_anonymize_relationships_4
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
233
diff
changeset
|
4679 pr = list(filter(lambda x: x['MainDicomTags']['Modality'] == 'PR', series)) |
|
93cd4fdd4a67
test_anonymize_relationships_4
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
233
diff
changeset
|
4680 self.assertEqual(1, len(cr)) |
|
93cd4fdd4a67
test_anonymize_relationships_4
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parents:
233
diff
changeset
|
4681 self.assertEqual(1, len(pr)) |
|
93cd4fdd4a67
test_anonymize_relationships_4
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parents:
233
diff
changeset
|
4682 self.assertEqual(1, len(cr[0]['Instances'])) |
|
93cd4fdd4a67
test_anonymize_relationships_4
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233
diff
changeset
|
4683 self.assertEqual(1, len(pr[0]['Instances'])) |
|
93cd4fdd4a67
test_anonymize_relationships_4
Sebastien Jodogne <s.jodogne@gmail.com>
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233
diff
changeset
|
4684 |
|
93cd4fdd4a67
test_anonymize_relationships_4
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233
diff
changeset
|
4685 crinstance = DoGet(_REMOTE, '/instances/%s' % cr[0]['Instances'][0]) |
|
93cd4fdd4a67
test_anonymize_relationships_4
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233
diff
changeset
|
4686 tags = DoGet(_REMOTE, '/instances/%s/tags?short' % pr[0]['Instances'][0]) |
|
93cd4fdd4a67
test_anonymize_relationships_4
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233
diff
changeset
|
4687 |
|
93cd4fdd4a67
test_anonymize_relationships_4
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233
diff
changeset
|
4688 self.assertEqual(tags['0008,1115'][0]['0008,1140'][0]['0008,1155'], |
|
93cd4fdd4a67
test_anonymize_relationships_4
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233
diff
changeset
|
4689 crinstance['MainDicomTags']['SOPInstanceUID']) |
|
93cd4fdd4a67
test_anonymize_relationships_4
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
233
diff
changeset
|
4690 self.assertEqual(tags['0008,1115'][0]['0008,1140'][0]['0008,1150'], |
|
93cd4fdd4a67
test_anonymize_relationships_4
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
233
diff
changeset
|
4691 '1.2.840.10008.5.1.4.1.1.1') # SOP class for CR Image Storage |
|
93cd4fdd4a67
test_anonymize_relationships_4
Sebastien Jodogne <s.jodogne@gmail.com>
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233
diff
changeset
|
4692 |
|
93cd4fdd4a67
test_anonymize_relationships_4
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parents:
233
diff
changeset
|
4693 # This fails on Orthanc <= 1.5.6 |
|
93cd4fdd4a67
test_anonymize_relationships_4
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parents:
233
diff
changeset
|
4694 self.assertEqual(tags['0008,1115'][0]['0020,000e'], |
|
93cd4fdd4a67
test_anonymize_relationships_4
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parents:
233
diff
changeset
|
4695 cr[0]['MainDicomTags']['SeriesInstanceUID']) |
|
235
9929e4af2b7a
test_bitbucket_issue_140
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
234
diff
changeset
|
4696 |
|
9929e4af2b7a
test_bitbucket_issue_140
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
234
diff
changeset
|
4697 |
|
255
02c3d91b155c
added anonymization test for RTH data (currently failing)
amazy
parents:
254
diff
changeset
|
4698 def test_anonymize_relationships_5(self): |
|
02c3d91b155c
added anonymization test for RTH data (currently failing)
amazy
parents:
254
diff
changeset
|
4699 ct1 = UploadInstance(_REMOTE, 'HierarchicalAnonymization/RTH/CT01.dcm') |
|
02c3d91b155c
added anonymization test for RTH data (currently failing)
amazy
parents:
254
diff
changeset
|
4700 rt1 = UploadInstance(_REMOTE, 'HierarchicalAnonymization/RTH/RT.dcm') |
|
02c3d91b155c
added anonymization test for RTH data (currently failing)
amazy
parents:
254
diff
changeset
|
4701 oStudyId = ct1['ParentStudy'] |
|
02c3d91b155c
added anonymization test for RTH data (currently failing)
amazy
parents:
254
diff
changeset
|
4702 oCtInstanceId = ct1['ID'] |
|
02c3d91b155c
added anonymization test for RTH data (currently failing)
amazy
parents:
254
diff
changeset
|
4703 oRtInstanceId = rt1['ID'] |
|
02c3d91b155c
added anonymization test for RTH data (currently failing)
amazy
parents:
254
diff
changeset
|
4704 |
|
02c3d91b155c
added anonymization test for RTH data (currently failing)
amazy
parents:
254
diff
changeset
|
4705 oCtTags = DoGet(_REMOTE, '/instances/%s/tags?simplify' % oCtInstanceId) |
|
02c3d91b155c
added anonymization test for RTH data (currently failing)
amazy
parents:
254
diff
changeset
|
4706 oRtTags = DoGet(_REMOTE, '/instances/%s/tags?simplify' % oRtInstanceId) |
|
02c3d91b155c
added anonymization test for RTH data (currently failing)
amazy
parents:
254
diff
changeset
|
4707 |
|
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4708 # first validate the relationships in the source data |
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4709 oStudyUID = oCtTags['StudyInstanceUID'] |
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4710 oRtSeriesUID = oRtTags['SeriesInstanceUID'] |
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4711 oRtInstanceUID = oRtTags['SOPInstanceUID'] |
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4712 oRtFrameOfReferenceUID = oRtTags['ReferencedFrameOfReferenceSequence'][0]['FrameOfReferenceUID'] |
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4713 oCtSeriesUID = oCtTags['SeriesInstanceUID'] |
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4714 oCtInstanceUID = oCtTags['SOPInstanceUID'] |
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4715 oCtFrameOfReferenceUID = oCtTags['FrameOfReferenceUID'] |
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4716 |
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4717 oContourSequenceCount = len(oRtTags['ROIContourSequence'][0]['ContourSequence']) |
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4718 self.assertEqual(oCtFrameOfReferenceUID, oRtFrameOfReferenceUID) |
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4719 self.assertEqual(oStudyUID, oRtTags['ReferencedFrameOfReferenceSequence'][0]['RTReferencedStudySequence'][0]['ReferencedSOPInstanceUID']) |
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4720 self.assertEqual(oCtSeriesUID, oRtTags['ReferencedFrameOfReferenceSequence'][0]['RTReferencedStudySequence'][0]['RTReferencedSeriesSequence'][0]['SeriesInstanceUID']) |
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4721 self.assertEqual(oCtInstanceUID, oRtTags['ReferencedFrameOfReferenceSequence'][0]['RTReferencedStudySequence'][0]['RTReferencedSeriesSequence'][0]['ContourImageSequence'][0]['ReferencedSOPInstanceUID']) |
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4722 self.assertEqual(oCtInstanceUID, oRtTags['ROIContourSequence'][0]['ContourSequence'][oContourSequenceCount-1]['ContourImageSequence'][0]['ReferencedSOPInstanceUID']) |
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4723 |
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4724 ### anonymize |
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4725 |
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4726 aStudyId = DoPost(_REMOTE, '/studies/%s/anonymize' % oStudyId, '{}', |
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4727 'application/json')['ID'] |
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4728 |
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4729 ### validate |
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4730 |
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4731 aSeries = DoGet(_REMOTE, '/studies/%s/series' % aStudyId) |
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4732 self.assertEqual(2, len(aSeries)) |
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4733 |
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4734 aCt = list(filter(lambda x: x['MainDicomTags']['Modality'] == 'CT', aSeries)) |
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4735 aRt = list(filter(lambda x: x['MainDicomTags']['Modality'] == 'RTSTRUCT', aSeries)) |
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4736 aCtInstanceId = aCt[0]['Instances'][0] |
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4737 aRtInstanceId = aRt[0]['Instances'][0] |
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4738 aCtTags = DoGet(_REMOTE, '/instances/%s/tags?simplify' % aCtInstanceId) |
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4739 aRtTags = DoGet(_REMOTE, '/instances/%s/tags?simplify' % aRtInstanceId) |
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4740 |
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4741 # now validate the relationships in the anonymized data |
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4742 aStudyUID = aCtTags['StudyInstanceUID'] |
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4743 aRtSeriesUID = aRtTags['SeriesInstanceUID'] |
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4744 aRtInstanceUID = aRtTags['SOPInstanceUID'] |
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4745 aRtFrameOfReferenceUID = aRtTags['ReferencedFrameOfReferenceSequence'][0]['FrameOfReferenceUID'] |
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4746 aCtSeriesUID = aCtTags['SeriesInstanceUID'] |
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4747 aCtInstanceUID = aCtTags['SOPInstanceUID'] |
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4748 aCtFrameOfReferenceUID = aCtTags['FrameOfReferenceUID'] |
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4749 |
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4750 aContourSequenceCount = len(aRtTags['ROIContourSequence'][0]['ContourSequence']) |
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4751 # make sure all UIDs have been updated |
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4752 self.assertNotEqual(oStudyUID, aStudyUID) |
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4753 self.assertNotEqual(oRtSeriesUID, aRtSeriesUID) |
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4754 self.assertNotEqual(oRtInstanceUID, aRtInstanceUID) |
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4755 self.assertNotEqual(oRtFrameOfReferenceUID, aRtFrameOfReferenceUID) |
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4756 self.assertNotEqual(oCtSeriesUID, aCtSeriesUID) |
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4757 self.assertNotEqual(oCtInstanceUID, aCtInstanceUID) |
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4758 self.assertNotEqual(oCtFrameOfReferenceUID, aCtFrameOfReferenceUID) |
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4759 |
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4760 # validate the relationships |
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4761 self.assertEqual(oContourSequenceCount, aContourSequenceCount) |
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4762 self.assertEqual(aCtFrameOfReferenceUID, aRtFrameOfReferenceUID) |
| 256 | 4763 self.assertEqual(aStudyUID, aRtTags['ReferencedFrameOfReferenceSequence'][0]['RTReferencedStudySequence'][0]['ReferencedSOPInstanceUID']) |
| 4764 self.assertEqual(aCtSeriesUID, aRtTags['ReferencedFrameOfReferenceSequence'][0]['RTReferencedStudySequence'][0]['RTReferencedSeriesSequence'][0]['SeriesInstanceUID']) | |
|
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4765 self.assertEqual(aCtInstanceUID, aRtTags['ReferencedFrameOfReferenceSequence'][0]['RTReferencedStudySequence'][0]['RTReferencedSeriesSequence'][0]['ContourImageSequence'][0]['ReferencedSOPInstanceUID']) |
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4766 self.assertEqual(aCtInstanceUID, aRtTags['ROIContourSequence'][0]['ContourSequence'][aContourSequenceCount-1]['ContourImageSequence'][0]['ReferencedSOPInstanceUID']) |
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4767 |
| 256 | 4768 def test_anonymize_relationships_5b(self): |
| 4769 # same test as previous one but, this time, we force the StudyInstanceUID | |
| 4770 ct1 = UploadInstance(_REMOTE, 'HierarchicalAnonymization/RTH/CT01.dcm') | |
| 4771 rt1 = UploadInstance(_REMOTE, 'HierarchicalAnonymization/RTH/RT.dcm') | |
| 4772 oStudyId = ct1['ParentStudy'] | |
| 4773 oCtInstanceId = ct1['ID'] | |
| 4774 oRtInstanceId = rt1['ID'] | |
| 4775 | |
| 4776 oCtTags = DoGet(_REMOTE, '/instances/%s/tags?simplify' % oCtInstanceId) | |
| 4777 oRtTags = DoGet(_REMOTE, '/instances/%s/tags?simplify' % oRtInstanceId) | |
| 4778 | |
| 4779 ### anonymize while forcing the StudyInstanceUID | |
| 4780 | |
| 4781 aStudyId = DoPost(_REMOTE, '/studies/%s/anonymize' % oStudyId, '{ "Replace" : { "StudyInstanceUID" : "1.2.3.4"}, "Force": true}', | |
| 4782 'application/json')['ID'] | |
| 4783 | |
| 4784 ### validate | |
| 4785 | |
| 4786 aSeries = DoGet(_REMOTE, '/studies/%s/series' % aStudyId) | |
| 4787 self.assertEqual(2, len(aSeries)) | |
| 4788 | |
| 4789 aCt = list(filter(lambda x: x['MainDicomTags']['Modality'] == 'CT', aSeries)) | |
| 4790 aRt = list(filter(lambda x: x['MainDicomTags']['Modality'] == 'RTSTRUCT', aSeries)) | |
| 4791 aCtInstanceId = aCt[0]['Instances'][0] | |
| 4792 aRtInstanceId = aRt[0]['Instances'][0] | |
| 4793 aCtTags = DoGet(_REMOTE, '/instances/%s/tags?simplify' % aCtInstanceId) | |
| 4794 aRtTags = DoGet(_REMOTE, '/instances/%s/tags?simplify' % aRtInstanceId) | |
| 4795 | |
| 4796 self.assertEqual("1.2.3.4", aCtTags['StudyInstanceUID']) | |
| 4797 self.assertEqual("1.2.3.4", aRtTags['StudyInstanceUID']) | |
| 4798 self.assertEqual("1.2.3.4", aRtTags['ReferencedFrameOfReferenceSequence'][0]['RTReferencedStudySequence'][0]['ReferencedSOPInstanceUID']) | |
|
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4799 |
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4800 |
|
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4801 def test_bitbucket_issue_140(self): |
| 266 | 4802 # "Modifying private tags with REST API changes VR from LO to |
| 267 | 4803 # UN." This test fails if DCMTK <= 3.6.1 (e.g. fails on Ubuntu 16.04). |
| 319 | 4804 # https://bugs.orthanc-server.com/show_bug.cgi?id=140 |
|
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4805 source = UploadInstance(_REMOTE, 'Issue140.dcm') ['ID'] |
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4806 series = DoGet(_REMOTE, '/instances/%s' % source) ['ParentSeries'] |
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4807 |
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4808 target = DoPost(_REMOTE, '/series/%s/modify' % series, { |
| 266 | 4809 'Replace' : { 'RadioButton3' : 'aaabbbccc' }, |
| 4810 'PrivateCreator' : 'RadioLogic', # <= the trick is here | |
|
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4811 }, 'application/json') ['ID'] |
|
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4812 |
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4813 instances = DoGet(_REMOTE, '/series/%s/instances' % target) |
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4814 self.assertEqual(1, len(instances)) |
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4815 |
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4816 tags = DoGet(_REMOTE, '/instances/%s/tags' % source) |
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4817 t = tags['4321,1012'] |
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4818 self.assertEqual('String', t['Type']) |
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4819 self.assertEqual('RadioButton3', t['Name']) |
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4820 self.assertEqual('RadioLogic', t['PrivateCreator']) |
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4821 self.assertEqual('jklmopq', t['Value']) |
|
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4822 |
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4823 tags = DoGet(_REMOTE, '/instances/%s/tags' % instances[0]['ID']) |
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4824 t = tags['4321,1012'] |
| 327 | 4825 self.assertEqual('String', t['Type']) # This fails if DCMTK <= 3.6.1 |
|
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4826 self.assertEqual('RadioButton3', t['Name']) |
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4827 self.assertEqual('RadioLogic', t['PrivateCreator']) |
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4828 self.assertEqual('aaabbbccc', t['Value']) |
|
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4829 |
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4830 |
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|
4831 def test_find_normalize(self): |
|
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4832 # https://groups.google.com/d/msg/orthanc-users/AIwooGjsh94/YL28MNY4AgAJ |
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4833 |
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|
4834 UploadInstance(_REMOTE, 'Knee/T1/IM-0001-0001.dcm') |
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4835 |
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4836 a = DoPost(_REMOTE, '/modalities/self/query', { |
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4837 'Level' : 'Instance', |
|
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4838 'Query' : { 'Rows' : '42' } |
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4839 }) ['ID'] |
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4840 |
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4841 b = DoGet(_REMOTE, '/queries/%s/answers?expand&simplify' % a) |
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4842 self.assertEqual(1, len(b)) |
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4843 self.assertFalse('Rows' in b[0]) |
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4844 |
|
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235
diff
changeset
|
4845 a = DoPost(_REMOTE, '/modalities/self/query', { |
|
2de1aec255ae
test_find_normalize
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235
diff
changeset
|
4846 'Level' : 'Instance', |
|
2de1aec255ae
test_find_normalize
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235
diff
changeset
|
4847 'Query' : { 'Rows' : '42' }, |
|
2de1aec255ae
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parents:
235
diff
changeset
|
4848 'Normalize' : False |
|
2de1aec255ae
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235
diff
changeset
|
4849 }) ['ID'] |
|
2de1aec255ae
test_find_normalize
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parents:
235
diff
changeset
|
4850 |
|
2de1aec255ae
test_find_normalize
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parents:
235
diff
changeset
|
4851 b = DoGet(_REMOTE, '/queries/%s/answers' % a) |
|
2de1aec255ae
test_find_normalize
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parents:
235
diff
changeset
|
4852 self.assertEqual(0, len(b)) |
|
2de1aec255ae
test_find_normalize
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235
diff
changeset
|
4853 |
|
2de1aec255ae
test_find_normalize
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
235
diff
changeset
|
4854 a = DoPost(_REMOTE, '/modalities/self/query', { |
|
2de1aec255ae
test_find_normalize
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parents:
235
diff
changeset
|
4855 'Level' : 'Instance', |
|
2de1aec255ae
test_find_normalize
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235
diff
changeset
|
4856 'Query' : { 'Rows' : '512' }, |
|
2de1aec255ae
test_find_normalize
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parents:
235
diff
changeset
|
4857 'Normalize' : False |
|
2de1aec255ae
test_find_normalize
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
235
diff
changeset
|
4858 }) ['ID'] |
|
2de1aec255ae
test_find_normalize
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
235
diff
changeset
|
4859 |
|
2de1aec255ae
test_find_normalize
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
235
diff
changeset
|
4860 b = DoGet(_REMOTE, '/queries/%s/answers?expand&simplify' % a) |
|
2de1aec255ae
test_find_normalize
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parents:
235
diff
changeset
|
4861 self.assertEqual(1, len(b)) |
|
2de1aec255ae
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parents:
235
diff
changeset
|
4862 self.assertTrue('Rows' in b[0]) |
|
2de1aec255ae
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parents:
235
diff
changeset
|
4863 self.assertEqual('512', b[0]['Rows']) |
| 237 | 4864 |
| 4865 a = DoPost(_REMOTE, '/modalities/self/query', { | |
| 4866 'Level' : 'Instance', | |
| 4867 'Query' : { 'Rows' : '' }, | |
| 4868 'Normalize' : False | |
| 4869 }) ['ID'] | |
| 4870 | |
| 4871 b = DoGet(_REMOTE, '/queries/%s/answers?expand&simplify' % a) | |
| 4872 self.assertEqual(1, len(b)) | |
| 4873 self.assertTrue('Rows' in b[0]) | |
| 4874 self.assertEqual('512', b[0]['Rows']) | |
| 4875 | |
| 4876 self.assertRaises(Exception, lambda: DoPost( | |
| 4877 _REMOTE, '/modalities/self/query', { | |
| 4878 'Level' : 'Instance', | |
| 4879 'Query' : { 'Rows' : '*' }, # Out-of-range value | |
| 4880 'Normalize' : False | |
| 4881 })) | |
|
243
cccf697a4e13
test_bitbucket_issue_141
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
237
diff
changeset
|
4882 |
|
cccf697a4e13
test_bitbucket_issue_141
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parents:
237
diff
changeset
|
4883 |
|
cccf697a4e13
test_bitbucket_issue_141
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parents:
237
diff
changeset
|
4884 def test_bitbucket_issue_141(self): |
| 319 | 4885 # https://bugs.orthanc-server.com/show_bug.cgi?id=141 |
|
243
cccf697a4e13
test_bitbucket_issue_141
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
237
diff
changeset
|
4886 a = UploadInstance(_REMOTE, 'Issue141.dcm') ['ID'] |
|
cccf697a4e13
test_bitbucket_issue_141
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parents:
237
diff
changeset
|
4887 study = '494c8037-b237f263-d8f15075-c8cb2280-daf39bd1' |
|
cccf697a4e13
test_bitbucket_issue_141
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
237
diff
changeset
|
4888 |
|
cccf697a4e13
test_bitbucket_issue_141
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
237
diff
changeset
|
4889 with open(GetDatabasePath('HelloWorld.pdf'), 'rb') as f: |
|
cccf697a4e13
test_bitbucket_issue_141
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
237
diff
changeset
|
4890 pdf = f.read() |
|
cccf697a4e13
test_bitbucket_issue_141
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
237
diff
changeset
|
4891 |
|
cccf697a4e13
test_bitbucket_issue_141
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
237
diff
changeset
|
4892 b = DoPost(_REMOTE, '/tools/create-dicom', { |
|
cccf697a4e13
test_bitbucket_issue_141
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
237
diff
changeset
|
4893 'Parent' : study, |
|
cccf697a4e13
test_bitbucket_issue_141
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
237
diff
changeset
|
4894 'Tags' : {}, |
|
cccf697a4e13
test_bitbucket_issue_141
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
237
diff
changeset
|
4895 'Content' : 'data:application/pdf;base64,' + base64.b64encode(pdf) |
|
cccf697a4e13
test_bitbucket_issue_141
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
237
diff
changeset
|
4896 }) ['ID'] |
|
cccf697a4e13
test_bitbucket_issue_141
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
237
diff
changeset
|
4897 |
|
cccf697a4e13
test_bitbucket_issue_141
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
237
diff
changeset
|
4898 tagsA = DoGet(_REMOTE, '/instances/%s/tags?short' % a) |
|
cccf697a4e13
test_bitbucket_issue_141
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
237
diff
changeset
|
4899 tagsB = DoGet(_REMOTE, '/instances/%s/tags?short' % b) |
|
cccf697a4e13
test_bitbucket_issue_141
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
237
diff
changeset
|
4900 self.assertEqual(tagsA['0008,0005'], tagsB['0008,0005']) |
|
cccf697a4e13
test_bitbucket_issue_141
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
237
diff
changeset
|
4901 self.assertEqual(tagsA['0008,1030'], tagsB['0008,1030']) |
|
247
1abdab0ba0e6
test_modifying_missing_patientid
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
243
diff
changeset
|
4902 |
|
1abdab0ba0e6
test_modifying_missing_patientid
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
243
diff
changeset
|
4903 |
|
1abdab0ba0e6
test_modifying_missing_patientid
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
243
diff
changeset
|
4904 def test_modifying_missing_patientid(self): |
|
1abdab0ba0e6
test_modifying_missing_patientid
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
243
diff
changeset
|
4905 # https://groups.google.com/d/msg/orthanc-users/aphG_h1AHVg/rfOTtTPTAgAJ |
|
1abdab0ba0e6
test_modifying_missing_patientid
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
243
diff
changeset
|
4906 UploadInstance(_REMOTE, '2019-06-17-VedranZdesic.dcm') |
|
1abdab0ba0e6
test_modifying_missing_patientid
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
243
diff
changeset
|
4907 DoPost(_REMOTE, '/studies/0c4aca1d-c107a241-6659d6aa-594c674a-a468b94a/modify', {}) |
| 262 | 4908 |
| 4909 | |
| 4910 def test_log_level(self): | |
| 319 | 4911 # https://bugs.orthanc-server.com/show_bug.cgi?id=65 |
| 262 | 4912 original = DoGet(_REMOTE, '/tools/log-level') |
| 4913 | |
| 4914 DoPut(_REMOTE, '/tools/log-level', 'default') | |
| 4915 self.assertEqual('default', DoGet(_REMOTE, '/tools/log-level')) | |
| 4916 DoGet(_REMOTE, '/system') | |
| 4917 | |
| 4918 DoPut(_REMOTE, '/tools/log-level', 'verbose') | |
| 4919 self.assertEqual('verbose', DoGet(_REMOTE, '/tools/log-level')) | |
| 4920 DoGet(_REMOTE, '/system') | |
| 4921 | |
| 4922 DoPut(_REMOTE, '/tools/log-level', 'trace') | |
| 4923 self.assertEqual('trace', DoGet(_REMOTE, '/tools/log-level')) | |
| 4924 DoGet(_REMOTE, '/system') | |
| 4925 | |
| 4926 self.assertRaises(Exception, lambda: DoPut(_REMOTE, '/tools/log-level', 'nope')) | |
| 4927 | |
| 4928 # Switch back to the original log level | |
| 4929 DoPut(_REMOTE, '/tools/log-level', original) | |
|
264
445f498bc1d4
test_upload_compressed
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
263
diff
changeset
|
4930 |
|
445f498bc1d4
test_upload_compressed
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
263
diff
changeset
|
4931 |
|
445f498bc1d4
test_upload_compressed
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
263
diff
changeset
|
4932 def test_upload_compressed(self): |
| 265 | 4933 # New in Orthanc 1.6.0 |
|
264
445f498bc1d4
test_upload_compressed
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
263
diff
changeset
|
4934 with open(GetDatabasePath('DummyCT.dcm.gz'), 'rb') as f: |
|
445f498bc1d4
test_upload_compressed
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
263
diff
changeset
|
4935 d = f.read() |
|
445f498bc1d4
test_upload_compressed
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
263
diff
changeset
|
4936 |
|
445f498bc1d4
test_upload_compressed
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
263
diff
changeset
|
4937 self.assertRaises(Exception, lambda: DoPost(_REMOTE, '/instances', d, 'application/dicom')) |
|
445f498bc1d4
test_upload_compressed
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
263
diff
changeset
|
4938 |
|
445f498bc1d4
test_upload_compressed
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
263
diff
changeset
|
4939 self.assertRaises(Exception, lambda: DoPost(_REMOTE, '/instances', d, 'application/dicom', |
|
445f498bc1d4
test_upload_compressed
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
263
diff
changeset
|
4940 headers = { 'Content-Encoding' : 'nope' })) |
|
445f498bc1d4
test_upload_compressed
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
263
diff
changeset
|
4941 |
|
445f498bc1d4
test_upload_compressed
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
263
diff
changeset
|
4942 a = DoPost(_REMOTE, '/instances', d, 'application/dicom', |
|
445f498bc1d4
test_upload_compressed
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
263
diff
changeset
|
4943 headers = { 'Content-Encoding' : 'gzip' }) |
|
445f498bc1d4
test_upload_compressed
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
263
diff
changeset
|
4944 self.assertEqual('66a662ce-7430e543-bad44d47-0dc5a943-ec7a538d', a['ID']) |
| 262 | 4945 |
| 4946 | |
|
263
a2719263fd04
test_study_series_find_inconsistency
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
262
diff
changeset
|
4947 def test_study_series_find_inconsistency(self): |
|
a2719263fd04
test_study_series_find_inconsistency
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
262
diff
changeset
|
4948 # https://groups.google.com/forum/#!topic/orthanc-users/bLv6Z11COy0 |
|
a2719263fd04
test_study_series_find_inconsistency
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
262
diff
changeset
|
4949 |
|
a2719263fd04
test_study_series_find_inconsistency
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
262
diff
changeset
|
4950 def CountAnswers(query): |
|
a2719263fd04
test_study_series_find_inconsistency
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
262
diff
changeset
|
4951 a = DoPost(_REMOTE, 'modalities/self/query', query) |
|
a2719263fd04
test_study_series_find_inconsistency
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
262
diff
changeset
|
4952 return len(DoGet(_REMOTE, '%s/answers' % a['Path'])) |
|
a2719263fd04
test_study_series_find_inconsistency
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
262
diff
changeset
|
4953 |
|
a2719263fd04
test_study_series_find_inconsistency
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
262
diff
changeset
|
4954 # This instance has "SeriesDescription" (0008,103e) tag, but no |
|
a2719263fd04
test_study_series_find_inconsistency
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
262
diff
changeset
|
4955 # "ProtocolName" (0018,1030). Both of those tags are part of |
|
a2719263fd04
test_study_series_find_inconsistency
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
262
diff
changeset
|
4956 # the "main DICOM tags" of Orthanc. |
|
a2719263fd04
test_study_series_find_inconsistency
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
262
diff
changeset
|
4957 UploadInstance(_REMOTE, 'Issue137.dcm') |
|
a2719263fd04
test_study_series_find_inconsistency
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
262
diff
changeset
|
4958 |
|
a2719263fd04
test_study_series_find_inconsistency
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
262
diff
changeset
|
4959 |
|
a2719263fd04
test_study_series_find_inconsistency
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
262
diff
changeset
|
4960 self.assertEqual(1, CountAnswers({ |
|
a2719263fd04
test_study_series_find_inconsistency
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
262
diff
changeset
|
4961 'Level' : 'Study', |
|
a2719263fd04
test_study_series_find_inconsistency
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
262
diff
changeset
|
4962 })) |
|
a2719263fd04
test_study_series_find_inconsistency
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
262
diff
changeset
|
4963 |
|
a2719263fd04
test_study_series_find_inconsistency
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
262
diff
changeset
|
4964 self.assertEqual(1, CountAnswers({ |
|
a2719263fd04
test_study_series_find_inconsistency
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
262
diff
changeset
|
4965 'Level' : 'Series', |
|
a2719263fd04
test_study_series_find_inconsistency
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
262
diff
changeset
|
4966 })) |
|
a2719263fd04
test_study_series_find_inconsistency
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
262
diff
changeset
|
4967 |
|
a2719263fd04
test_study_series_find_inconsistency
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
262
diff
changeset
|
4968 |
|
a2719263fd04
test_study_series_find_inconsistency
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
262
diff
changeset
|
4969 ## |
|
a2719263fd04
test_study_series_find_inconsistency
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
262
diff
changeset
|
4970 ## "SeriesDescription" is present, and has VR "CS" => wildcard is allowed |
|
a2719263fd04
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Sebastien Jodogne <s.jodogne@gmail.com>
parents:
262
diff
changeset
|
4971 ## http://dicom.nema.org/medical/dicom/2019e/output/chtml/part04/sect_C.2.2.2.4.html |
|
a2719263fd04
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Sebastien Jodogne <s.jodogne@gmail.com>
parents:
262
diff
changeset
|
4972 ## |
|
a2719263fd04
test_study_series_find_inconsistency
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
262
diff
changeset
|
4973 |
|
a2719263fd04
test_study_series_find_inconsistency
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
262
diff
changeset
|
4974 # At the study level, the "SeriesDescription" tag is not allowed, but |
|
a2719263fd04
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Sebastien Jodogne <s.jodogne@gmail.com>
parents:
262
diff
changeset
|
4975 # is wiped out by the normalization |
|
a2719263fd04
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Sebastien Jodogne <s.jodogne@gmail.com>
parents:
262
diff
changeset
|
4976 self.assertEqual(0, CountAnswers({ |
|
a2719263fd04
test_study_series_find_inconsistency
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
262
diff
changeset
|
4977 'Level' : 'Study', |
|
a2719263fd04
test_study_series_find_inconsistency
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
262
diff
changeset
|
4978 'Query' : { |
|
a2719263fd04
test_study_series_find_inconsistency
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
262
diff
changeset
|
4979 'SeriesDescription' : 'NOPE' |
|
a2719263fd04
test_study_series_find_inconsistency
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
262
diff
changeset
|
4980 }, |
|
a2719263fd04
test_study_series_find_inconsistency
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
262
diff
changeset
|
4981 'Normalize' : False |
|
a2719263fd04
test_study_series_find_inconsistency
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
262
diff
changeset
|
4982 })) |
|
a2719263fd04
test_study_series_find_inconsistency
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
262
diff
changeset
|
4983 self.assertEqual(0, CountAnswers({ |
|
a2719263fd04
test_study_series_find_inconsistency
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
262
diff
changeset
|
4984 # This test fails on Orthanc <= 1.5.8 |
|
a2719263fd04
test_study_series_find_inconsistency
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
262
diff
changeset
|
4985 'Level' : 'Study', |
|
a2719263fd04
test_study_series_find_inconsistency
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
262
diff
changeset
|
4986 'Query' : { |
|
a2719263fd04
test_study_series_find_inconsistency
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
262
diff
changeset
|
4987 'SeriesDescription' : '*' # Wildcard matching => no match, as the tag is absent |
|
a2719263fd04
test_study_series_find_inconsistency
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
262
diff
changeset
|
4988 }, |
|
a2719263fd04
test_study_series_find_inconsistency
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
262
diff
changeset
|
4989 'Normalize' : False |
|
a2719263fd04
test_study_series_find_inconsistency
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
262
diff
changeset
|
4990 })) |
|
a2719263fd04
test_study_series_find_inconsistency
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
262
diff
changeset
|
4991 self.assertEqual(1, CountAnswers({ |
|
a2719263fd04
test_study_series_find_inconsistency
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
262
diff
changeset
|
4992 'Level' : 'Study', |
|
a2719263fd04
test_study_series_find_inconsistency
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
262
diff
changeset
|
4993 'Query' : { |
|
a2719263fd04
test_study_series_find_inconsistency
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
262
diff
changeset
|
4994 'SeriesDescription' : 'THIS^VALUE^IS^WIPED^OUT' |
|
a2719263fd04
test_study_series_find_inconsistency
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
262
diff
changeset
|
4995 }, |
|
a2719263fd04
test_study_series_find_inconsistency
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
262
diff
changeset
|
4996 'Normalize' : True |
|
a2719263fd04
test_study_series_find_inconsistency
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
262
diff
changeset
|
4997 })) |
|
a2719263fd04
test_study_series_find_inconsistency
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
262
diff
changeset
|
4998 self.assertEqual(1, CountAnswers({ |
|
a2719263fd04
test_study_series_find_inconsistency
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
262
diff
changeset
|
4999 'Level' : 'Study', |
|
a2719263fd04
test_study_series_find_inconsistency
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
262
diff
changeset
|
5000 'Query' : { |
|
a2719263fd04
test_study_series_find_inconsistency
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
262
diff
changeset
|
5001 'SeriesDescription' : '*' # Matches, as wiped out by the normalization |
|
a2719263fd04
test_study_series_find_inconsistency
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
262
diff
changeset
|
5002 }, |
|
a2719263fd04
test_study_series_find_inconsistency
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
262
diff
changeset
|
5003 'Normalize' : True |
|
a2719263fd04
test_study_series_find_inconsistency
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
262
diff
changeset
|
5004 })) |
|
a2719263fd04
test_study_series_find_inconsistency
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
262
diff
changeset
|
5005 |
|
a2719263fd04
test_study_series_find_inconsistency
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
262
diff
changeset
|
5006 for normalize in [ True, False ]: |
|
a2719263fd04
test_study_series_find_inconsistency
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
262
diff
changeset
|
5007 # At the series level, the "SeriesDescription" tag is allowed, and |
|
a2719263fd04
test_study_series_find_inconsistency
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
262
diff
changeset
|
5008 # normalization has no effect |
|
a2719263fd04
test_study_series_find_inconsistency
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
262
diff
changeset
|
5009 |
|
a2719263fd04
test_study_series_find_inconsistency
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
262
diff
changeset
|
5010 # "Universal matching" will match all entities, including |
|
a2719263fd04
test_study_series_find_inconsistency
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
262
diff
changeset
|
5011 # those with the missing tag |
|
a2719263fd04
test_study_series_find_inconsistency
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
262
diff
changeset
|
5012 # http://dicom.nema.org/medical/dicom/2019e/output/chtml/part04/sect_C.2.2.2.3.html |
|
a2719263fd04
test_study_series_find_inconsistency
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
262
diff
changeset
|
5013 self.assertEqual(1, CountAnswers({ |
|
a2719263fd04
test_study_series_find_inconsistency
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
262
diff
changeset
|
5014 'Level' : 'Series', |
|
a2719263fd04
test_study_series_find_inconsistency
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
262
diff
changeset
|
5015 'Query' : { |
|
a2719263fd04
test_study_series_find_inconsistency
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
262
diff
changeset
|
5016 'SeriesDescription' : '' # Universal matching |
|
a2719263fd04
test_study_series_find_inconsistency
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
262
diff
changeset
|
5017 }, |
|
a2719263fd04
test_study_series_find_inconsistency
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
262
diff
changeset
|
5018 'Normalize' : normalize, |
|
a2719263fd04
test_study_series_find_inconsistency
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
262
diff
changeset
|
5019 })) |
|
a2719263fd04
test_study_series_find_inconsistency
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
262
diff
changeset
|
5020 # "Universal matching" will match all entities, including |
|
a2719263fd04
test_study_series_find_inconsistency
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
262
diff
changeset
|
5021 # those with the missing tag |
|
a2719263fd04
test_study_series_find_inconsistency
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
262
diff
changeset
|
5022 # http://dicom.nema.org/medical/dicom/2019e/output/chtml/part04/sect_C.2.2.2.3.html |
|
a2719263fd04
test_study_series_find_inconsistency
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
262
diff
changeset
|
5023 self.assertEqual(1, CountAnswers({ |
|
a2719263fd04
test_study_series_find_inconsistency
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
262
diff
changeset
|
5024 'Level' : 'Series', |
|
a2719263fd04
test_study_series_find_inconsistency
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
262
diff
changeset
|
5025 'Query' : { |
|
a2719263fd04
test_study_series_find_inconsistency
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
262
diff
changeset
|
5026 'SeriesDescription' : '*' # Wildcard matching |
|
a2719263fd04
test_study_series_find_inconsistency
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
262
diff
changeset
|
5027 }, |
|
a2719263fd04
test_study_series_find_inconsistency
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
262
diff
changeset
|
5028 'Normalize' : normalize, |
|
a2719263fd04
test_study_series_find_inconsistency
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
262
diff
changeset
|
5029 })) |
|
a2719263fd04
test_study_series_find_inconsistency
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
262
diff
changeset
|
5030 self.assertEqual(1, CountAnswers({ |
|
a2719263fd04
test_study_series_find_inconsistency
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
262
diff
changeset
|
5031 'Level' : 'Series', |
|
a2719263fd04
test_study_series_find_inconsistency
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
262
diff
changeset
|
5032 'Query' : { |
|
a2719263fd04
test_study_series_find_inconsistency
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
262
diff
changeset
|
5033 'SeriesDescription' : '*model*' # The actual value is "STL model: intraop Report" |
|
a2719263fd04
test_study_series_find_inconsistency
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
262
diff
changeset
|
5034 }, |
|
a2719263fd04
test_study_series_find_inconsistency
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
262
diff
changeset
|
5035 'Normalize' : normalize, |
|
a2719263fd04
test_study_series_find_inconsistency
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
262
diff
changeset
|
5036 })) |
|
a2719263fd04
test_study_series_find_inconsistency
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
262
diff
changeset
|
5037 self.assertEqual(0, CountAnswers({ |
|
a2719263fd04
test_study_series_find_inconsistency
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
262
diff
changeset
|
5038 'Level' : 'Series', |
|
a2719263fd04
test_study_series_find_inconsistency
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
262
diff
changeset
|
5039 'Query' : { |
|
a2719263fd04
test_study_series_find_inconsistency
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
262
diff
changeset
|
5040 'SeriesDescription' : '*MISMATCHED^VALUE*' |
|
a2719263fd04
test_study_series_find_inconsistency
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
262
diff
changeset
|
5041 }, |
|
a2719263fd04
test_study_series_find_inconsistency
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
262
diff
changeset
|
5042 'Normalize' : normalize, |
|
a2719263fd04
test_study_series_find_inconsistency
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
262
diff
changeset
|
5043 })) |
|
a2719263fd04
test_study_series_find_inconsistency
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
262
diff
changeset
|
5044 |
|
a2719263fd04
test_study_series_find_inconsistency
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
262
diff
changeset
|
5045 # Universal matching matches any instance, even if the |
|
a2719263fd04
test_study_series_find_inconsistency
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
262
diff
changeset
|
5046 # query is at the study-level, and thus if "SeriesDescription" |
|
a2719263fd04
test_study_series_find_inconsistency
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
262
diff
changeset
|
5047 # makes no sense |
|
a2719263fd04
test_study_series_find_inconsistency
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
262
diff
changeset
|
5048 self.assertEqual(1, CountAnswers({ |
|
a2719263fd04
test_study_series_find_inconsistency
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
262
diff
changeset
|
5049 'Level' : 'Study', |
|
a2719263fd04
test_study_series_find_inconsistency
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
262
diff
changeset
|
5050 'Query' : { |
|
a2719263fd04
test_study_series_find_inconsistency
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
262
diff
changeset
|
5051 'SeriesDescription' : '' # Universal matching |
|
a2719263fd04
test_study_series_find_inconsistency
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
262
diff
changeset
|
5052 }, |
|
a2719263fd04
test_study_series_find_inconsistency
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
262
diff
changeset
|
5053 'Normalize' : normalize, |
|
a2719263fd04
test_study_series_find_inconsistency
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
262
diff
changeset
|
5054 })) |
|
a2719263fd04
test_study_series_find_inconsistency
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
262
diff
changeset
|
5055 |
|
a2719263fd04
test_study_series_find_inconsistency
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
262
diff
changeset
|
5056 |
|
a2719263fd04
test_study_series_find_inconsistency
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
262
diff
changeset
|
5057 |
|
a2719263fd04
test_study_series_find_inconsistency
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
262
diff
changeset
|
5058 ## |
|
a2719263fd04
test_study_series_find_inconsistency
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
262
diff
changeset
|
5059 ## "ProtocolName" is absent, and has VR "CS" => wildcard is allowed |
|
a2719263fd04
test_study_series_find_inconsistency
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
262
diff
changeset
|
5060 ## |
|
a2719263fd04
test_study_series_find_inconsistency
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
262
diff
changeset
|
5061 |
|
a2719263fd04
test_study_series_find_inconsistency
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
262
diff
changeset
|
5062 # At the study level, the "ProtocolName" tag is not allowed, but |
|
a2719263fd04
test_study_series_find_inconsistency
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
262
diff
changeset
|
5063 # is wiped out by the normalization |
|
a2719263fd04
test_study_series_find_inconsistency
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
262
diff
changeset
|
5064 self.assertEqual(0, CountAnswers({ |
|
a2719263fd04
test_study_series_find_inconsistency
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
262
diff
changeset
|
5065 'Level' : 'Study', |
|
a2719263fd04
test_study_series_find_inconsistency
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
262
diff
changeset
|
5066 'Query' : { |
|
a2719263fd04
test_study_series_find_inconsistency
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
262
diff
changeset
|
5067 'ProtocolName' : 'NOPE' |
|
a2719263fd04
test_study_series_find_inconsistency
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
262
diff
changeset
|
5068 }, |
|
a2719263fd04
test_study_series_find_inconsistency
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
262
diff
changeset
|
5069 'Normalize' : False |
|
a2719263fd04
test_study_series_find_inconsistency
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
262
diff
changeset
|
5070 })) |
|
a2719263fd04
test_study_series_find_inconsistency
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
262
diff
changeset
|
5071 self.assertEqual(0, CountAnswers({ |
|
a2719263fd04
test_study_series_find_inconsistency
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
262
diff
changeset
|
5072 'Level' : 'Study', |
|
a2719263fd04
test_study_series_find_inconsistency
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
262
diff
changeset
|
5073 'Query' : { |
|
a2719263fd04
test_study_series_find_inconsistency
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
262
diff
changeset
|
5074 'ProtocolName' : '*' # Wildcard matching => no match, as the tag is absent |
|
a2719263fd04
test_study_series_find_inconsistency
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
262
diff
changeset
|
5075 }, |
|
a2719263fd04
test_study_series_find_inconsistency
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
262
diff
changeset
|
5076 'Normalize' : False |
|
a2719263fd04
test_study_series_find_inconsistency
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
262
diff
changeset
|
5077 })) |
|
a2719263fd04
test_study_series_find_inconsistency
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
262
diff
changeset
|
5078 self.assertEqual(1, CountAnswers({ |
|
a2719263fd04
test_study_series_find_inconsistency
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
262
diff
changeset
|
5079 'Level' : 'Study', |
|
a2719263fd04
test_study_series_find_inconsistency
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
262
diff
changeset
|
5080 'Query' : { |
|
a2719263fd04
test_study_series_find_inconsistency
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
262
diff
changeset
|
5081 'ProtocolName' : 'THIS^VALUE^IS^WIPED^OUT' |
|
a2719263fd04
test_study_series_find_inconsistency
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
262
diff
changeset
|
5082 }, |
|
a2719263fd04
test_study_series_find_inconsistency
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
262
diff
changeset
|
5083 'Normalize' : True |
|
a2719263fd04
test_study_series_find_inconsistency
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
262
diff
changeset
|
5084 })) |
|
a2719263fd04
test_study_series_find_inconsistency
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
262
diff
changeset
|
5085 self.assertEqual(1, CountAnswers({ |
|
a2719263fd04
test_study_series_find_inconsistency
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
262
diff
changeset
|
5086 'Level' : 'Study', |
|
a2719263fd04
test_study_series_find_inconsistency
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
262
diff
changeset
|
5087 'Query' : { |
|
a2719263fd04
test_study_series_find_inconsistency
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
262
diff
changeset
|
5088 'ProtocolName' : '*' # Matches, as wiped out by the normalization |
|
a2719263fd04
test_study_series_find_inconsistency
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
262
diff
changeset
|
5089 }, |
|
a2719263fd04
test_study_series_find_inconsistency
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
262
diff
changeset
|
5090 'Normalize' : True |
|
a2719263fd04
test_study_series_find_inconsistency
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
262
diff
changeset
|
5091 })) |
|
a2719263fd04
test_study_series_find_inconsistency
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
262
diff
changeset
|
5092 |
|
a2719263fd04
test_study_series_find_inconsistency
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
262
diff
changeset
|
5093 for normalize in [ True, False ]: |
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5094 # At the series level, the "ProtocolName" tag is allowed, and |
|
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5095 # normalization has no effect |
|
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5096 |
|
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5097 self.assertEqual(1, CountAnswers({ |
|
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5098 'Level' : 'Series', |
|
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5099 'Query' : { |
|
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5100 'ProtocolName' : '' # Universal matching |
|
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5101 }, |
|
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|
5102 'Normalize' : normalize, |
|
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|
5103 })) |
|
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|
5104 self.assertEqual(0, CountAnswers({ |
|
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5105 'Level' : 'Series', |
|
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|
5106 'Query' : { |
|
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5107 'ProtocolName' : '*' # Wildcard matching => no match, as the tag is absent |
|
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|
5108 }, |
|
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|
5109 'Normalize' : normalize, |
|
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|
5110 })) |
|
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|
5111 self.assertEqual(0, CountAnswers({ |
|
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5112 'Level' : 'Series', |
|
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|
5113 'Query' : { |
|
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|
5114 'ProtocolName' : '*MISMATCHED^VALUE*' |
|
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|
5115 }, |
|
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|
5116 'Normalize' : normalize, |
|
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|
5117 })) |
|
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|
5118 |
|
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|
5119 self.assertEqual(1, CountAnswers({ |
|
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|
5120 'Level' : 'Study', |
|
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5121 'Query' : { |
|
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|
5122 'ProtocolName' : '' # Universal matching |
|
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5123 }, |
|
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|
5124 'Normalize' : normalize, |
|
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|
5125 })) |
|
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|
5126 |
|
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|
5127 |
|
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|
5128 ## |
|
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5129 ## "StudyInstanceUID" is present, and has VR "UI" => wildcard is not allowed |
|
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5130 ## |
|
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|
5131 |
|
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|
5132 for level in [ 'Study', 'Series' ] : |
|
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|
5133 for normalize in [ True, False ]: |
|
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|
5134 self.assertEqual(1, CountAnswers({ |
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|
5135 'Level' : level, |
|
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5136 'Query' : { |
|
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5137 'StudyInstanceUID' : '' # Universal matching |
|
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5138 }, |
|
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|
5139 'Normalize' : normalize, |
|
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|
5140 })) |
|
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|
5141 self.assertEqual(0, CountAnswers({ |
|
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|
5142 'Level' : level, |
|
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|
5143 'Query' : { |
|
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5144 'StudyInstanceUID' : 'MISMATCHED^VALUE' |
|
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|
5145 }, |
|
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|
5146 'Normalize' : normalize, |
|
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|
5147 })) |
|
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|
5148 self.assertEqual(1, CountAnswers({ |
|
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|
5149 'Level' : level, |
|
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|
5150 'Query' : { |
|
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|
5151 'StudyInstanceUID' : '4.5.6' # This is the actual value |
|
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|
5152 }, |
|
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|
5153 'Normalize' : normalize, |
|
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|
5154 })) |
|
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|
5155 |
| 269 | 5156 # Wildcard matching is not allowed for this VR |
|
263
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|
5157 # This test fails on Orthanc <= 1.5.8 |
| 269 | 5158 self.assertRaises(Exception, lambda: CountAnswers({ |
|
263
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|
5159 'Level' : level, |
|
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|
5160 'Query' : { |
| 269 | 5161 'StudyInstanceUID' : '*' |
|
263
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|
5162 }, |
|
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|
5163 'Normalize' : normalize, |
|
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|
5164 })) |
| 265 | 5165 |
| 5166 | |
| 5167 def test_rendered(self): | |
| 5168 # New in Orthanc 1.6.0 | |
| 5169 i = UploadInstance(_REMOTE, 'ColorTestMalaterre.dcm')['ID'] | |
| 5170 im = GetImage(_REMOTE, '/instances/%s/rendered' % i) | |
| 5171 self.assertEqual("RGB", im.mode) | |
| 5172 self.assertEqual(41, im.size[0]) | |
| 5173 self.assertEqual(41, im.size[1]) | |
| 5174 | |
| 5175 # http://effbot.org/zone/pil-comparing-images.htm | |
| 5176 truth = Image.open(GetDatabasePath('ColorTestMalaterre.png')) | |
| 5177 self.assertTrue(ImageChops.difference(im, truth).getbbox() is None) | |
| 5178 | |
| 5179 im = GetImage(_REMOTE, '/instances/%s/rendered?width=10' % i) | |
| 5180 self.assertEqual("RGB", im.mode) | |
| 5181 self.assertEqual(10, im.size[0]) | |
| 5182 self.assertEqual(10, im.size[1]) | |
| 5183 | |
| 5184 im = GetImage(_REMOTE, '/instances/%s/rendered?height=10' % i) | |
| 5185 self.assertEqual("RGB", im.mode) | |
| 5186 self.assertEqual(10, im.size[0]) | |
| 5187 self.assertEqual(10, im.size[1]) | |
| 5188 | |
| 5189 im = GetImage(_REMOTE, '/instances/%s/rendered?height=128' % i) | |
| 5190 self.assertEqual("RGB", im.mode) | |
| 5191 self.assertEqual(128, im.size[0]) | |
| 5192 self.assertEqual(128, im.size[1]) | |
| 5193 | |
| 5194 im = GetImage(_REMOTE, '/instances/%s/rendered?height=10&smooth=0' % i) | |
| 5195 self.assertEqual("RGB", im.mode) | |
| 5196 self.assertEqual(10, im.size[0]) | |
| 5197 self.assertEqual(10, im.size[1]) | |
| 5198 | |
| 5199 im = GetImage(_REMOTE, '/instances/%s/rendered?height=10&smooth=1' % i) | |
| 5200 self.assertEqual("RGB", im.mode) | |
| 5201 self.assertEqual(10, im.size[0]) | |
| 5202 self.assertEqual(10, im.size[1]) | |
| 5203 | |
| 5204 im = GetImage(_REMOTE, '/instances/%s/rendered?height=5&width=10' % i) | |
| 5205 self.assertEqual("RGB", im.mode) | |
| 5206 self.assertEqual(5, im.size[0]) | |
| 5207 self.assertEqual(5, im.size[1]) | |
| 5208 | |
| 5209 | |
| 5210 # Grayscale image | |
| 5211 i = UploadInstance(_REMOTE, 'Brainix/Flair/IM-0001-0001.dcm')['ID'] | |
| 5212 im = GetImage(_REMOTE, '/instances/%s/rendered' % i) | |
| 5213 self.assertEqual("L", im.mode) | |
| 5214 self.assertEqual(288, im.size[0]) | |
| 5215 self.assertEqual(288, im.size[1]) | |
| 5216 self.assertEqual(0, im.getpixel((0, 0))) | |
| 5217 | |
| 5218 # Those are the original windowing parameters that are written | |
| 5219 # inside the DICOM file | |
| 5220 im2 = GetImage(_REMOTE, '/instances/%s/rendered?window-center=248.009544468547&window-width=431.351843817788' % i) | |
| 5221 self.assertEqual("L", im2.mode) | |
| 5222 self.assertEqual(288, im2.size[0]) | |
| 5223 self.assertEqual(288, im2.size[1]) | |
| 5224 self.assertTrue(ImageChops.difference(im, im2).getbbox() is None) | |
| 5225 | |
| 5226 im = GetImage(_REMOTE, '/instances/%s/rendered?width=512&smooth=0' % i) | |
| 5227 self.assertEqual("L", im.mode) | |
| 5228 self.assertEqual(512, im.size[0]) | |
| 5229 self.assertEqual(512, im.size[1]) | |
| 5230 | |
| 5231 im = GetImage(_REMOTE, '/instances/%s/rendered?width=10&smooth=0' % i) | |
| 5232 self.assertEqual("L", im.mode) | |
| 5233 self.assertEqual(10, im.size[0]) | |
| 5234 self.assertEqual(10, im.size[1]) | |
| 5235 | |
| 5236 im = GetImage(_REMOTE, '/instances/%s/rendered?width=10&smooth=1' % i) | |
| 5237 self.assertEqual("L", im.mode) | |
| 5238 self.assertEqual(10, im.size[0]) | |
| 5239 self.assertEqual(10, im.size[1]) | |
| 5240 | |
| 5241 im = GetImage(_REMOTE, '/instances/%s/rendered?width=1&window-center=-1000' % i) | |
| 5242 self.assertEqual("L", im.mode) | |
| 5243 self.assertEqual(1, im.size[0]) | |
| 5244 self.assertEqual(1, im.size[1]) | |
| 5245 self.assertEqual(255, im.getpixel((0, 0))) | |
| 5246 | |
| 5247 im = GetImage(_REMOTE, '/instances/%s/rendered?width=1&window-center=1000' % i) | |
| 5248 self.assertEqual("L", im.mode) | |
| 5249 self.assertEqual(1, im.size[0]) | |
| 5250 self.assertEqual(1, im.size[1]) | |
| 5251 self.assertEqual(0, im.getpixel((0, 0))) | |
| 5252 | |
| 5253 | |
| 5254 # Test monochrome 1 | |
| 5255 i = UploadInstance(_REMOTE, 'Issue44/Monochrome1.dcm')['ID'] | |
| 5256 im = GetImage(_REMOTE, '/instances/%s/rendered' % i) | |
| 5257 self.assertEqual("L", im.mode) | |
| 5258 self.assertEqual(2010, im.size[0]) | |
| 5259 self.assertEqual(2446, im.size[1]) | |
| 5260 self.assertEqual(0, im.getpixel((0, 0))) | |
| 5261 im = GetImage(_REMOTE, '/instances/%s/rendered?width=20' % i) | |
| 5262 self.assertEqual("L", im.mode) | |
| 5263 self.assertEqual(20, im.size[0]) | |
| 5264 self.assertEqual(24, im.size[1]) | |
| 5265 im = GetImage(_REMOTE, '/instances/%s/rendered?height=24' % i) | |
| 5266 self.assertEqual("L", im.mode) | |
| 5267 self.assertEqual(20, im.size[0]) | |
| 5268 self.assertEqual(24, im.size[1]) | |
| 5269 im = GetImage(_REMOTE, '/instances/%s/rendered?width=10&height=24' % i) | |
| 5270 self.assertEqual("L", im.mode) | |
| 5271 self.assertEqual(10, im.size[0]) | |
| 5272 self.assertEqual(12, im.size[1]) | |
| 5273 im = GetImage(_REMOTE, '/instances/%s/rendered?width=40&height=24' % i) | |
| 5274 self.assertEqual("L", im.mode) | |
| 5275 self.assertEqual(20, im.size[0]) | |
| 5276 self.assertEqual(24, im.size[1]) | |
|
268
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5277 |
|
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|
5278 |
|
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|
5279 def test_bitbucket_issue_154(self): |
|
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5280 # "Matching against list of UID-s by C-MOVE" |
| 319 | 5281 # https://bugs.orthanc-server.com/show_bug.cgi?id=154 |
|
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5282 a = UploadInstance(_REMOTE, 'Issue154-d1.dcm') ['ID'] |
|
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|
5283 b = UploadInstance(_REMOTE, 'Issue154-d2.dcm') ['ID'] |
|
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5284 |
|
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|
5285 study = '1.2.826.0.1.3680043.8.498.35214236271657363033644818354280454731' |
|
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|
5286 series1 = '1.2.826.0.1.3680043.8.498.12243321927795467590791662266352305113' |
|
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|
5287 series2 = '1.2.826.0.1.3680043.8.498.43769499931624584079690260699536473555' |
|
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5288 |
|
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|
5289 # C-FIND is working on list of UIDs |
|
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5290 i = CallFindScu([ '-k', 'QueryRetrieveLevel=SERIES', |
|
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5291 '-k', 'StudyInstanceUID=%s' % study, |
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5292 '-k', 'SeriesInstanceUID=%s\\%s' % (series1, series2) ]) |
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5293 series = re.findall('\(0020,000e\).*?\[(.*?)\]', i) |
|
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5294 self.assertEqual(2, len(series)) |
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5295 self.assertTrue(series1 in series) |
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5296 self.assertTrue(series2 in series) |
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5297 |
|
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5298 # Individual retrieval is working in Orthanc < 1.6.0 |
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5299 self.assertEqual(0, len(DoGet(_LOCAL, '/instances'))) |
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5300 self.assertTrue(MonitorJob(_REMOTE, lambda: CallMoveScu([ |
|
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5301 '--study', '-k', 'QueryRetrieveLevel=SERIES', |
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5302 '-k', 'StudyInstanceUID=%s' % study, |
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5303 '-k', 'SeriesInstanceUID=%s' % series1, |
|
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5304 ]))) |
|
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5305 self.assertTrue(MonitorJob(_REMOTE, lambda: CallMoveScu([ |
|
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5306 '--study', '-k', 'QueryRetrieveLevel=SERIES', |
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5307 '-k', 'StudyInstanceUID=%s' % study, |
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5308 '-k', 'SeriesInstanceUID=%s' % series2, |
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5309 ]))) |
|
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5310 self.assertEqual(2, len(DoGet(_LOCAL, '/instances'))) |
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5311 |
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5312 DropOrthanc(_LOCAL) |
|
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5313 |
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5314 # But list matching is working only in Orthanc >= 1.6.0 |
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5315 self.assertEqual(0, len(DoGet(_LOCAL, '/instances'))) |
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5316 self.assertTrue(MonitorJob(_REMOTE, lambda: CallMoveScu([ |
|
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5317 '--study', '-k', 'QueryRetrieveLevel=SERIES', |
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5318 '-k', 'StudyInstanceUID=%s' % study, |
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5319 '-k', 'SeriesInstanceUID=%s\\%s' % (series1, series2), |
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5320 ]))) |
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5321 self.assertEqual(2, len(DoGet(_LOCAL, '/instances'))) |
|
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5322 |
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|
5323 |
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5324 def test_storage_commitment_api(self): |
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5325 # Storage commitment is available since Orthanc 1.6.0 |
|
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5326 |
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5327 def WaitTransaction(uid): |
|
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5328 while True: |
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5329 s = DoGet(_REMOTE, '/storage-commitment/%s' % uid) |
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5330 if s['Status'] != 'Pending': |
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5331 return s |
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|
5332 else: |
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|
5333 time.sleep(0.1) |
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5334 |
| 281 | 5335 instance = UploadInstance(_REMOTE, 'DummyCT.dcm') |
|
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5336 sopClassUid = '1.2.840.10008.5.1.4.1.1.4' |
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5337 sopInstanceUid = '1.2.840.113619.2.176.2025.1499492.7040.1171286242.109' |
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5338 |
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|
5339 # Against self |
| 281 | 5340 transaction = DoPost(_REMOTE, '/modalities/self/storage-commitment', { |
| 5341 "DicomInstances" : [ [ sopClassUid, sopInstanceUid ] ], | |
| 5342 }) ['ID'] | |
|
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5343 self.assertTrue(transaction.startswith('2.25.')) |
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|
5344 |
|
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|
5345 result = WaitTransaction(transaction) |
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|
5346 self.assertEqual('ORTHANC', result['RemoteAET']) |
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|
5347 self.assertEqual('Success', result['Status']) |
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|
5348 self.assertEqual(1, len(result['Success'])) |
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|
5349 self.assertEqual(0, len(result['Failures'])) |
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|
5350 self.assertEqual(sopClassUid, result['Success'][0]['SOPClassUID']) |
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|
5351 self.assertEqual(sopInstanceUid, result['Success'][0]['SOPInstanceUID']) |
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|
5352 |
| 281 | 5353 tmp = DoPost(_REMOTE, '/modalities/self/storage-commitment', { |
| 5354 "DicomInstances" : [ | |
| 5355 { 'SOPClassUID' : sopClassUid, | |
| 5356 'SOPInstanceUID' : sopInstanceUid }, | |
| 5357 ], | |
| 5358 }) | |
| 5359 self.assertEqual(tmp['Path'], '/storage-commitment/%s' % tmp['ID']) | |
| 5360 self.assertEqual(result, WaitTransaction(transaction)) | |
| 5361 | |
| 5362 tmp = DoPost(_REMOTE, '/modalities/self/storage-commitment', { | |
| 5363 "Resources" : [ | |
| 5364 instance['ID'], | |
| 5365 instance['ParentSeries'], | |
| 5366 instance['ParentStudy'], | |
| 5367 instance['ParentPatient'], | |
| 5368 ] | |
| 5369 }) | |
|
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|
5370 self.assertEqual(tmp['Path'], '/storage-commitment/%s' % tmp['ID']) |
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|
5371 self.assertEqual(result, WaitTransaction(transaction)) |
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|
5372 |
|
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|
5373 |
| 281 | 5374 transaction = DoPost(_REMOTE, '/modalities/self/storage-commitment', { |
| 5375 "DicomInstances" : [ | |
| 5376 [ 'nope', 'nope2' ], | |
| 5377 [ sopClassUid, sopInstanceUid ], | |
| 5378 ], | |
| 5379 }) ['ID'] | |
|
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|
5380 self.assertTrue(transaction.startswith('2.25.')) |
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|
5381 |
|
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changeset
|
5382 result = WaitTransaction(transaction) |
|
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|
5383 self.assertEqual('ORTHANC', result['RemoteAET']) |
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|
5384 self.assertEqual('Failure', result['Status']) |
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|
5385 self.assertEqual(1, len(result['Success'])) |
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|
5386 self.assertEqual(1, len(result['Failures'])) |
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|
5387 self.assertEqual(sopClassUid, result['Success'][0]['SOPClassUID']) |
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|
5388 self.assertEqual(sopInstanceUid, result['Success'][0]['SOPInstanceUID']) |
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|
5389 self.assertEqual('nope', result['Failures'][0]['SOPClassUID']) |
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|
5390 self.assertEqual('nope2', result['Failures'][0]['SOPInstanceUID']) |
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|
5391 self.assertEqual(274, result['Failures'][0]['FailureReason']) |
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|
5392 |
|
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|
5393 # Cannot remove items from a failed storage commitment transaction |
|
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|
5394 self.assertRaises(Exception, lambda: |
|
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|
5395 DoPost(_REMOTE, '/storage-commitment/%s/remove' % transaction)) |
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|
5396 |
|
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|
5397 |
|
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|
5398 # Against Orthanc 0.8.6, that does not support storage commitment |
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|
5399 self.assertRaises(Exception, lambda: |
| 281 | 5400 DoPost(_REMOTE, '/modalities/orthanctest/storage-commitment', { |
| 5401 "DicomInstances" : [ | |
| 5402 [ sopClassUid, sopInstanceUid ], | |
| 5403 ] | |
| 5404 })) | |
|
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5405 |
|
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|
5406 |
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|
5407 |
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|
5408 def test_storage_commitment_store(self): |
|
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5409 # Storage commitment is available since Orthanc 1.6.0 |
|
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5410 |
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|
5411 def WaitTransaction(uid): |
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|
5412 while True: |
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|
5413 s = DoGet(_REMOTE, '/storage-commitment/%s' % uid) |
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5414 if s['Status'] != 'Pending': |
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|
5415 return s |
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5416 else: |
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|
5417 time.sleep(0.1) |
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|
5418 |
|
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5419 i = UploadInstance(_REMOTE, 'DummyCT.dcm')['ID'] |
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5420 self.assertEqual(1, len(DoGet(_REMOTE, '/instances'))) |
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diff
changeset
|
5421 self.assertEqual(0, len(DoGet(_LOCAL, '/instances'))) |
|
31e1e49df380
starting tests for storage commitment
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
269
diff
changeset
|
5422 |
|
31e1e49df380
starting tests for storage commitment
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
269
diff
changeset
|
5423 # The Orthanc 0.8.6 from "_LOCAL" does not support storage commitment |
|
31e1e49df380
starting tests for storage commitment
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
269
diff
changeset
|
5424 self.assertRaises(Exception, lambda: DoPost(_REMOTE, '/modalities/orthanctest/store', { |
|
31e1e49df380
starting tests for storage commitment
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
269
diff
changeset
|
5425 'Resources' : [ i ], |
|
31e1e49df380
starting tests for storage commitment
Sebastien Jodogne <s.jodogne@gmail.com>
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269
diff
changeset
|
5426 'StorageCommitment' : True, |
|
31e1e49df380
starting tests for storage commitment
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
269
diff
changeset
|
5427 })) |
|
31e1e49df380
starting tests for storage commitment
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
269
diff
changeset
|
5428 |
|
31e1e49df380
starting tests for storage commitment
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
269
diff
changeset
|
5429 j = DoPost(_REMOTE, '/modalities/orthanctest/store', { |
|
31e1e49df380
starting tests for storage commitment
Sebastien Jodogne <s.jodogne@gmail.com>
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269
diff
changeset
|
5430 'Resources' : [ i ], |
|
31e1e49df380
starting tests for storage commitment
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
269
diff
changeset
|
5431 'StorageCommitment' : False, |
|
31e1e49df380
starting tests for storage commitment
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
269
diff
changeset
|
5432 }) |
|
31e1e49df380
starting tests for storage commitment
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
269
diff
changeset
|
5433 self.assertEqual(1, len(DoGet(_LOCAL, '/instances'))) |
|
31e1e49df380
starting tests for storage commitment
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
269
diff
changeset
|
5434 |
|
31e1e49df380
starting tests for storage commitment
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
269
diff
changeset
|
5435 j = DoPost(_REMOTE, '/modalities/self/store', { |
|
31e1e49df380
starting tests for storage commitment
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
269
diff
changeset
|
5436 'Resources' : [ i ], |
|
31e1e49df380
starting tests for storage commitment
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
269
diff
changeset
|
5437 'StorageCommitment' : True, |
|
31e1e49df380
starting tests for storage commitment
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
269
diff
changeset
|
5438 }) |
|
31e1e49df380
starting tests for storage commitment
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
269
diff
changeset
|
5439 |
|
31e1e49df380
starting tests for storage commitment
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
269
diff
changeset
|
5440 transaction = j['StorageCommitmentTransactionUID'] |
|
31e1e49df380
starting tests for storage commitment
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
269
diff
changeset
|
5441 self.assertTrue(transaction.startswith('2.25.')) |
|
280
5daa3896981c
testing storage commitment reports
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
279
diff
changeset
|
5442 |
|
5daa3896981c
testing storage commitment reports
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
279
diff
changeset
|
5443 result = WaitTransaction(transaction) |
|
5daa3896981c
testing storage commitment reports
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
279
diff
changeset
|
5444 self.assertEqual('ORTHANC', result['RemoteAET']) |
|
5daa3896981c
testing storage commitment reports
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
279
diff
changeset
|
5445 self.assertEqual('Success', result['Status']) |
|
5daa3896981c
testing storage commitment reports
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
279
diff
changeset
|
5446 self.assertEqual(1, len(result['Success'])) |
|
5daa3896981c
testing storage commitment reports
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
279
diff
changeset
|
5447 self.assertEqual(0, len(result['Failures'])) |
|
5daa3896981c
testing storage commitment reports
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
279
diff
changeset
|
5448 self.assertEqual('1.2.840.10008.5.1.4.1.1.4', result['Success'][0]['SOPClassUID']) |
|
5daa3896981c
testing storage commitment reports
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
279
diff
changeset
|
5449 self.assertEqual('1.2.840.113619.2.176.2025.1499492.7040.1171286242.109', |
|
5daa3896981c
testing storage commitment reports
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
279
diff
changeset
|
5450 result['Success'][0]['SOPInstanceUID']) |
|
5daa3896981c
testing storage commitment reports
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
279
diff
changeset
|
5451 |
|
5daa3896981c
testing storage commitment reports
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
279
diff
changeset
|
5452 self.assertEqual(1, len(DoGet(_REMOTE, '/instances'))) |
|
5daa3896981c
testing storage commitment reports
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
279
diff
changeset
|
5453 DoPost(_REMOTE, '/storage-commitment/%s/remove' % transaction) |
|
5daa3896981c
testing storage commitment reports
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
279
diff
changeset
|
5454 self.assertEqual(0, len(DoGet(_REMOTE, '/instances'))) |
|
285
281a32ecc5c1
test_store_straight
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
281
diff
changeset
|
5455 |
|
281a32ecc5c1
test_store_straight
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
281
diff
changeset
|
5456 |
|
281a32ecc5c1
test_store_straight
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
281
diff
changeset
|
5457 def test_store_straight(self): # New in Orthanc 1.6.1 |
|
281a32ecc5c1
test_store_straight
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
281
diff
changeset
|
5458 self.assertEqual(0, len(DoGet(_LOCAL, '/instances'))) |
|
281a32ecc5c1
test_store_straight
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
281
diff
changeset
|
5459 self.assertEqual(0, len(DoGet(_REMOTE, '/instances'))) |
|
281a32ecc5c1
test_store_straight
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
281
diff
changeset
|
5460 |
|
281a32ecc5c1
test_store_straight
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
281
diff
changeset
|
5461 with open(GetDatabasePath('DummyCT.dcm'), 'rb') as f: |
|
281a32ecc5c1
test_store_straight
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
281
diff
changeset
|
5462 dicom = f.read() |
|
281a32ecc5c1
test_store_straight
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
281
diff
changeset
|
5463 |
|
281a32ecc5c1
test_store_straight
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
281
diff
changeset
|
5464 self.assertRaises(Exception, lambda: DoPost( |
|
281a32ecc5c1
test_store_straight
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
281
diff
changeset
|
5465 _REMOTE, '/modalities/orthanctest/store-straight', 'nope', 'nope')) |
|
281a32ecc5c1
test_store_straight
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
281
diff
changeset
|
5466 |
|
281a32ecc5c1
test_store_straight
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
281
diff
changeset
|
5467 answer = DoPost(_REMOTE, '/modalities/orthanctest/store-straight', dicom, 'nope') |
|
281a32ecc5c1
test_store_straight
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
281
diff
changeset
|
5468 |
|
281a32ecc5c1
test_store_straight
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
281
diff
changeset
|
5469 self.assertEqual('1.2.840.10008.5.1.4.1.1.4', |
|
281a32ecc5c1
test_store_straight
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
281
diff
changeset
|
5470 answer['SOPClassUID']) |
|
281a32ecc5c1
test_store_straight
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
281
diff
changeset
|
5471 self.assertEqual('1.2.840.113619.2.176.2025.1499492.7040.1171286242.109', |
|
281a32ecc5c1
test_store_straight
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
281
diff
changeset
|
5472 answer['SOPInstanceUID']) |
|
281a32ecc5c1
test_store_straight
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
281
diff
changeset
|
5473 |
|
281a32ecc5c1
test_store_straight
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
281
diff
changeset
|
5474 self.assertEqual(1, len(DoGet(_LOCAL, '/instances'))) |
|
281a32ecc5c1
test_store_straight
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
281
diff
changeset
|
5475 self.assertEqual(0, len(DoGet(_REMOTE, '/instances'))) |
|
289
4a70411ac9ad
test_storescu_transcoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
285
diff
changeset
|
5476 |
|
4a70411ac9ad
test_storescu_transcoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
285
diff
changeset
|
5477 |
|
4a70411ac9ad
test_storescu_transcoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
285
diff
changeset
|
5478 def test_storescu_transcoding(self): # New in Orthanc 1.7.0 |
|
4a70411ac9ad
test_storescu_transcoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
285
diff
changeset
|
5479 # Add a RLE-encoded DICOM file |
|
4a70411ac9ad
test_storescu_transcoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
285
diff
changeset
|
5480 i = UploadInstance(_REMOTE, 'TransferSyntaxes/1.2.840.10008.1.2.5.dcm')['ID'] |
|
4a70411ac9ad
test_storescu_transcoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
285
diff
changeset
|
5481 self.assertEqual(0, len(DoGet(_LOCAL, '/instances'))) |
|
4a70411ac9ad
test_storescu_transcoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
285
diff
changeset
|
5482 self.assertEqual(1, len(DoGet(_REMOTE, '/instances'))) |
|
4a70411ac9ad
test_storescu_transcoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
285
diff
changeset
|
5483 rleSize = len(DoGet(_REMOTE, '/instances/%s/file' % i)) |
|
4a70411ac9ad
test_storescu_transcoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
285
diff
changeset
|
5484 |
|
4a70411ac9ad
test_storescu_transcoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
285
diff
changeset
|
5485 # Export the instance, with transcoding: "_REMOTE" is the |
|
4a70411ac9ad
test_storescu_transcoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
285
diff
changeset
|
5486 # Orthanc server being tested |
|
4a70411ac9ad
test_storescu_transcoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
285
diff
changeset
|
5487 try: |
|
4a70411ac9ad
test_storescu_transcoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
285
diff
changeset
|
5488 DoDelete(_REMOTE, '/modalities/toto') |
|
4a70411ac9ad
test_storescu_transcoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
285
diff
changeset
|
5489 except: |
|
4a70411ac9ad
test_storescu_transcoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
285
diff
changeset
|
5490 pass |
|
4a70411ac9ad
test_storescu_transcoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
285
diff
changeset
|
5491 |
|
4a70411ac9ad
test_storescu_transcoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
285
diff
changeset
|
5492 params = DoGet(_REMOTE, '/modalities?expand') ['orthanctest'] |
|
4a70411ac9ad
test_storescu_transcoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
285
diff
changeset
|
5493 DoPut(_REMOTE, '/modalities/toto', params) |
|
4a70411ac9ad
test_storescu_transcoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
285
diff
changeset
|
5494 DoPost(_REMOTE, '/modalities/toto/store', str(i), 'text/plain') |
|
4a70411ac9ad
test_storescu_transcoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
285
diff
changeset
|
5495 j = DoGet(_LOCAL, '/instances') |
|
4a70411ac9ad
test_storescu_transcoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
285
diff
changeset
|
5496 self.assertEqual(1, len(j)) |
|
4a70411ac9ad
test_storescu_transcoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
285
diff
changeset
|
5497 uncompressedSize = len(DoGet(_LOCAL, '/instances/%s/file' % j[0])) |
|
4a70411ac9ad
test_storescu_transcoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
285
diff
changeset
|
5498 self.assertTrue(uncompressedSize > rleSize / 2) |
|
4a70411ac9ad
test_storescu_transcoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
285
diff
changeset
|
5499 |
|
4a70411ac9ad
test_storescu_transcoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
285
diff
changeset
|
5500 # Export, with transcoding disabled => this fails |
|
4a70411ac9ad
test_storescu_transcoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
285
diff
changeset
|
5501 params['AllowTranscoding'] = False |
|
4a70411ac9ad
test_storescu_transcoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
285
diff
changeset
|
5502 DoPut(_REMOTE, '/modalities/toto', params) |
|
4a70411ac9ad
test_storescu_transcoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
285
diff
changeset
|
5503 self.assertRaises(Exception, lambda: DoPost(_REMOTE, '/modalities/toto/store', str(i), 'text/plain')) |
|
290
b5333f87065b
test_bitbucket_issue_169
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
289
diff
changeset
|
5504 |
|
b5333f87065b
test_bitbucket_issue_169
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
289
diff
changeset
|
5505 |
|
b5333f87065b
test_bitbucket_issue_169
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
289
diff
changeset
|
5506 def test_bitbucket_issue_169(self): |
|
b5333f87065b
test_bitbucket_issue_169
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
289
diff
changeset
|
5507 with open(GetDatabasePath('Issue169.dcm.bz2'), 'rb') as f: |
|
b5333f87065b
test_bitbucket_issue_169
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
289
diff
changeset
|
5508 dicom = bz2.decompress(f.read()) |
|
b5333f87065b
test_bitbucket_issue_169
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
289
diff
changeset
|
5509 |
|
b5333f87065b
test_bitbucket_issue_169
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
289
diff
changeset
|
5510 self.assertEqual('1.2.840.10008.1.2.1', GetTransferSyntax(dicom)) |
|
b5333f87065b
test_bitbucket_issue_169
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
289
diff
changeset
|
5511 |
|
b5333f87065b
test_bitbucket_issue_169
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
289
diff
changeset
|
5512 self.assertEqual(44350560, len(dicom)) |
|
b5333f87065b
test_bitbucket_issue_169
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
289
diff
changeset
|
5513 i = DoPost(_REMOTE, '/instances', dicom, 'application/dicom') ['ID'] |
|
b5333f87065b
test_bitbucket_issue_169
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
289
diff
changeset
|
5514 |
|
b5333f87065b
test_bitbucket_issue_169
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
289
diff
changeset
|
5515 tags = DoGet(_REMOTE, '/instances/%s/tags' % i) |
|
b5333f87065b
test_bitbucket_issue_169
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
289
diff
changeset
|
5516 self.assertEqual('NORMAL', tags['1337,1001']['Value']) |
|
b5333f87065b
test_bitbucket_issue_169
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
289
diff
changeset
|
5517 |
|
b5333f87065b
test_bitbucket_issue_169
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
289
diff
changeset
|
5518 self.assertEqual(0, len(DoGet(_LOCAL, '/instances'))) |
|
b5333f87065b
test_bitbucket_issue_169
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
289
diff
changeset
|
5519 DoPost(_REMOTE, '/modalities/orthanctest/store', str(i), 'text/plain') |
|
b5333f87065b
test_bitbucket_issue_169
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
289
diff
changeset
|
5520 j = DoGet(_LOCAL, '/instances') |
|
b5333f87065b
test_bitbucket_issue_169
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
289
diff
changeset
|
5521 self.assertEqual(1, len(j)) |
|
b5333f87065b
test_bitbucket_issue_169
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
289
diff
changeset
|
5522 |
|
b5333f87065b
test_bitbucket_issue_169
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
289
diff
changeset
|
5523 # In Orthanc <= 1.6.1, transfer syntax changed from "Explicit |
|
b5333f87065b
test_bitbucket_issue_169
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
289
diff
changeset
|
5524 # VR Little Endian" (1.2.840.10008.1.2.1) to "Implicit VR |
|
b5333f87065b
test_bitbucket_issue_169
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
289
diff
changeset
|
5525 # Little Endian" (1.2.840.10008.1.2) |
|
291
cfa785074c64
test_modify_transcode
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
290
diff
changeset
|
5526 self.assertEqual('1.2.840.10008.1.2.1', GetTransferSyntax( |
|
cfa785074c64
test_modify_transcode
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
290
diff
changeset
|
5527 DoGet(_LOCAL, '/instances/%s/file' % j[0]))) |
|
290
b5333f87065b
test_bitbucket_issue_169
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
289
diff
changeset
|
5528 |
|
b5333f87065b
test_bitbucket_issue_169
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
289
diff
changeset
|
5529 # In Orthanc <= 1.6.1, the value of the private tags was lost |
|
b5333f87065b
test_bitbucket_issue_169
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
289
diff
changeset
|
5530 # because of this transcoding |
|
b5333f87065b
test_bitbucket_issue_169
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
289
diff
changeset
|
5531 tags = DoGet(_LOCAL, '/instances/%s/tags' % j[0]) |
|
b5333f87065b
test_bitbucket_issue_169
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
289
diff
changeset
|
5532 self.assertEqual('NORMAL', tags['1337,1001']['Value']) |
|
291
cfa785074c64
test_modify_transcode
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
290
diff
changeset
|
5533 |
|
cfa785074c64
test_modify_transcode
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
290
diff
changeset
|
5534 |
|
302
22b6dd0f8c84
test_modify_transcode_study
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
301
diff
changeset
|
5535 def test_modify_transcode_instance(self): |
|
291
cfa785074c64
test_modify_transcode
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
290
diff
changeset
|
5536 i = UploadInstance(_REMOTE, 'KarstenHilbertRF.dcm')['ID'] |
|
cfa785074c64
test_modify_transcode
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
290
diff
changeset
|
5537 self.assertEqual('1.2.840.10008.1.2.1', GetTransferSyntax( |
|
cfa785074c64
test_modify_transcode
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
290
diff
changeset
|
5538 DoGet(_REMOTE, '/instances/%s/file' % i))) |
|
cfa785074c64
test_modify_transcode
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
290
diff
changeset
|
5539 |
|
299
c2144cf4bd83
HasGdcmPlugin() test
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
293
diff
changeset
|
5540 a = ExtractDicomTags(DoGet(_REMOTE, '/instances/%s/file' % i), [ 'SOPInstanceUID' ]) [0] |
|
c2144cf4bd83
HasGdcmPlugin() test
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
293
diff
changeset
|
5541 self.assertTrue(len(a) > 20) |
|
c2144cf4bd83
HasGdcmPlugin() test
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
293
diff
changeset
|
5542 |
|
c2144cf4bd83
HasGdcmPlugin() test
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
293
diff
changeset
|
5543 SYNTAXES = [ |
|
c2144cf4bd83
HasGdcmPlugin() test
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
293
diff
changeset
|
5544 '1.2.840.10008.1.2', |
|
c2144cf4bd83
HasGdcmPlugin() test
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
293
diff
changeset
|
5545 '1.2.840.10008.1.2.1', |
|
300
d6c2eb5a2603
disabling test on Deflated Explicit VR Little Endian
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
299
diff
changeset
|
5546 #'1.2.840.10008.1.2.1.99', # Deflated Explicit VR Little Endian (cannot be decoded in debug mode if Orthanc is statically linked against DCMTK 3.6.5) |
|
299
c2144cf4bd83
HasGdcmPlugin() test
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
293
diff
changeset
|
5547 '1.2.840.10008.1.2.2', |
|
c2144cf4bd83
HasGdcmPlugin() test
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
293
diff
changeset
|
5548 '1.2.840.10008.1.2.4.50', |
|
c2144cf4bd83
HasGdcmPlugin() test
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
293
diff
changeset
|
5549 '1.2.840.10008.1.2.4.51', |
|
c2144cf4bd83
HasGdcmPlugin() test
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
293
diff
changeset
|
5550 '1.2.840.10008.1.2.4.57', |
|
c2144cf4bd83
HasGdcmPlugin() test
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
293
diff
changeset
|
5551 '1.2.840.10008.1.2.4.70', |
|
c2144cf4bd83
HasGdcmPlugin() test
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
293
diff
changeset
|
5552 ] |
|
c2144cf4bd83
HasGdcmPlugin() test
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
293
diff
changeset
|
5553 |
| 304 | 5554 if HasGdcmPlugin(_REMOTE): |
|
299
c2144cf4bd83
HasGdcmPlugin() test
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
293
diff
changeset
|
5555 SYNTAXES = SYNTAXES + [ |
|
c2144cf4bd83
HasGdcmPlugin() test
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
293
diff
changeset
|
5556 '1.2.840.10008.1.2.4.80', # This makes DCMTK 3.6.2 crash |
|
c2144cf4bd83
HasGdcmPlugin() test
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
293
diff
changeset
|
5557 '1.2.840.10008.1.2.4.81', # This makes DCMTK 3.6.2 crash |
|
c2144cf4bd83
HasGdcmPlugin() test
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
293
diff
changeset
|
5558 '1.2.840.10008.1.2.4.90', # JPEG2k, unavailable without GDCM |
|
c2144cf4bd83
HasGdcmPlugin() test
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
293
diff
changeset
|
5559 '1.2.840.10008.1.2.4.91', # JPEG2k, unavailable without GDCM |
|
c2144cf4bd83
HasGdcmPlugin() test
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
293
diff
changeset
|
5560 ] |
|
c2144cf4bd83
HasGdcmPlugin() test
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
293
diff
changeset
|
5561 |
|
c2144cf4bd83
HasGdcmPlugin() test
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
293
diff
changeset
|
5562 for syntax in SYNTAXES: |
|
291
cfa785074c64
test_modify_transcode
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
290
diff
changeset
|
5563 transcoded = DoPost(_REMOTE, '/instances/%s/modify' % i, { |
|
cfa785074c64
test_modify_transcode
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
290
diff
changeset
|
5564 'Transcode' : syntax, |
|
299
c2144cf4bd83
HasGdcmPlugin() test
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
293
diff
changeset
|
5565 'Keep' : [ 'SOPInstanceUID' ], |
|
c2144cf4bd83
HasGdcmPlugin() test
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
293
diff
changeset
|
5566 'Force' : True, |
|
291
cfa785074c64
test_modify_transcode
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
290
diff
changeset
|
5567 }) |
|
cfa785074c64
test_modify_transcode
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
290
diff
changeset
|
5568 |
|
cfa785074c64
test_modify_transcode
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
290
diff
changeset
|
5569 self.assertEqual(syntax, GetTransferSyntax(transcoded)) |
|
292
e1827a4f5d3b
test_archive_transcode
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
291
diff
changeset
|
5570 |
|
299
c2144cf4bd83
HasGdcmPlugin() test
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
293
diff
changeset
|
5571 b = ExtractDicomTags(transcoded, [ 'SOPInstanceUID' ]) [0] |
|
c2144cf4bd83
HasGdcmPlugin() test
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
293
diff
changeset
|
5572 self.assertTrue(len(b) > 20) |
|
c2144cf4bd83
HasGdcmPlugin() test
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
293
diff
changeset
|
5573 if syntax in [ '1.2.840.10008.1.2.4.50', |
|
c2144cf4bd83
HasGdcmPlugin() test
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
293
diff
changeset
|
5574 '1.2.840.10008.1.2.4.51', |
|
c2144cf4bd83
HasGdcmPlugin() test
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
293
diff
changeset
|
5575 '1.2.840.10008.1.2.4.81', |
|
c2144cf4bd83
HasGdcmPlugin() test
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
293
diff
changeset
|
5576 '1.2.840.10008.1.2.4.91' ]: |
|
c2144cf4bd83
HasGdcmPlugin() test
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
293
diff
changeset
|
5577 # Lossy transcoding: The SOP instance UID must have changed |
|
c2144cf4bd83
HasGdcmPlugin() test
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
293
diff
changeset
|
5578 self.assertNotEqual(a, b) |
|
c2144cf4bd83
HasGdcmPlugin() test
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
293
diff
changeset
|
5579 else: |
|
c2144cf4bd83
HasGdcmPlugin() test
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
293
diff
changeset
|
5580 self.assertEqual(a, b) |
|
292
e1827a4f5d3b
test_archive_transcode
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
291
diff
changeset
|
5581 |
|
e1827a4f5d3b
test_archive_transcode
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
291
diff
changeset
|
5582 def test_archive_transcode(self): |
|
e1827a4f5d3b
test_archive_transcode
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
291
diff
changeset
|
5583 info = UploadInstance(_REMOTE, 'KarstenHilbertRF.dcm') |
|
e1827a4f5d3b
test_archive_transcode
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
291
diff
changeset
|
5584 |
|
293
032722c3e919
extended test_archive_transcode
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
292
diff
changeset
|
5585 # GET on "/media" |
|
292
e1827a4f5d3b
test_archive_transcode
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
291
diff
changeset
|
5586 z = GetArchive(_REMOTE, '/patients/%s/media' % info['ParentPatient']) |
|
e1827a4f5d3b
test_archive_transcode
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
291
diff
changeset
|
5587 self.assertEqual(2, len(z.namelist())) |
|
e1827a4f5d3b
test_archive_transcode
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
291
diff
changeset
|
5588 self.assertEqual('1.2.840.10008.1.2.1', GetTransferSyntax(z.read('IMAGES/IM0'))) |
|
e1827a4f5d3b
test_archive_transcode
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
291
diff
changeset
|
5589 |
|
e1827a4f5d3b
test_archive_transcode
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
291
diff
changeset
|
5590 self.assertRaises(Exception, lambda: DoGet(_REMOTE, '/patients/%s/media?transcode=nope' % info['ParentPatient'])) |
|
e1827a4f5d3b
test_archive_transcode
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
291
diff
changeset
|
5591 |
|
e1827a4f5d3b
test_archive_transcode
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
291
diff
changeset
|
5592 z = GetArchive(_REMOTE, '/patients/%s/media?transcode=1.2.840.10008.1.2.4.50' % info['ParentPatient']) |
|
e1827a4f5d3b
test_archive_transcode
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
291
diff
changeset
|
5593 self.assertEqual('1.2.840.10008.1.2.4.50', GetTransferSyntax(z.read('IMAGES/IM0'))) |
|
e1827a4f5d3b
test_archive_transcode
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
291
diff
changeset
|
5594 |
|
e1827a4f5d3b
test_archive_transcode
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
291
diff
changeset
|
5595 z = GetArchive(_REMOTE, '/studies/%s/media?transcode=1.2.840.10008.1.2.4.51' % info['ParentStudy']) |
|
e1827a4f5d3b
test_archive_transcode
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
291
diff
changeset
|
5596 self.assertEqual('1.2.840.10008.1.2.4.51', GetTransferSyntax(z.read('IMAGES/IM0'))) |
|
e1827a4f5d3b
test_archive_transcode
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
291
diff
changeset
|
5597 |
|
e1827a4f5d3b
test_archive_transcode
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
291
diff
changeset
|
5598 z = GetArchive(_REMOTE, '/series/%s/media?transcode=1.2.840.10008.1.2.4.57' % info['ParentSeries']) |
|
e1827a4f5d3b
test_archive_transcode
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
291
diff
changeset
|
5599 self.assertEqual('1.2.840.10008.1.2.4.57', GetTransferSyntax(z.read('IMAGES/IM0'))) |
|
e1827a4f5d3b
test_archive_transcode
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
291
diff
changeset
|
5600 |
|
293
032722c3e919
extended test_archive_transcode
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
292
diff
changeset
|
5601 |
|
032722c3e919
extended test_archive_transcode
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
292
diff
changeset
|
5602 # POST on "/media" |
|
032722c3e919
extended test_archive_transcode
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
292
diff
changeset
|
5603 self.assertRaises(Exception, lambda: PostArchive( |
|
032722c3e919
extended test_archive_transcode
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
292
diff
changeset
|
5604 _REMOTE, '/patients/%s/media' % info['ParentPatient'], { 'Transcode' : 'nope' })) |
|
032722c3e919
extended test_archive_transcode
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
292
diff
changeset
|
5605 |
|
032722c3e919
extended test_archive_transcode
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
292
diff
changeset
|
5606 z = PostArchive(_REMOTE, '/patients/%s/media' % info['ParentPatient'], { |
|
032722c3e919
extended test_archive_transcode
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
292
diff
changeset
|
5607 'Transcode' : '1.2.840.10008.1.2.4.50', |
|
032722c3e919
extended test_archive_transcode
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
292
diff
changeset
|
5608 }) |
|
032722c3e919
extended test_archive_transcode
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
292
diff
changeset
|
5609 self.assertEqual('1.2.840.10008.1.2.4.50', GetTransferSyntax(z.read('IMAGES/IM0'))) |
|
032722c3e919
extended test_archive_transcode
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
292
diff
changeset
|
5610 |
|
032722c3e919
extended test_archive_transcode
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
292
diff
changeset
|
5611 z = PostArchive(_REMOTE, '/studies/%s/media' % info['ParentStudy'], { |
|
032722c3e919
extended test_archive_transcode
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
292
diff
changeset
|
5612 'Transcode' : '1.2.840.10008.1.2.4.51', |
|
032722c3e919
extended test_archive_transcode
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
292
diff
changeset
|
5613 }) |
|
032722c3e919
extended test_archive_transcode
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
292
diff
changeset
|
5614 self.assertEqual('1.2.840.10008.1.2.4.51', GetTransferSyntax(z.read('IMAGES/IM0'))) |
|
032722c3e919
extended test_archive_transcode
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
292
diff
changeset
|
5615 |
|
032722c3e919
extended test_archive_transcode
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
292
diff
changeset
|
5616 z = PostArchive(_REMOTE, '/series/%s/media' % info['ParentSeries'], { |
|
032722c3e919
extended test_archive_transcode
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
292
diff
changeset
|
5617 'Transcode' : '1.2.840.10008.1.2.4.57', |
|
032722c3e919
extended test_archive_transcode
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
292
diff
changeset
|
5618 }) |
|
032722c3e919
extended test_archive_transcode
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
292
diff
changeset
|
5619 self.assertEqual('1.2.840.10008.1.2.4.57', GetTransferSyntax(z.read('IMAGES/IM0'))) |
|
032722c3e919
extended test_archive_transcode
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
292
diff
changeset
|
5620 |
|
032722c3e919
extended test_archive_transcode
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
292
diff
changeset
|
5621 |
|
032722c3e919
extended test_archive_transcode
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
292
diff
changeset
|
5622 # GET on "/archive" |
|
292
e1827a4f5d3b
test_archive_transcode
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
291
diff
changeset
|
5623 z = GetArchive(_REMOTE, '/patients/%s/archive' % info['ParentPatient']) |
|
e1827a4f5d3b
test_archive_transcode
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
291
diff
changeset
|
5624 self.assertEqual(1, len(z.namelist())) |
|
e1827a4f5d3b
test_archive_transcode
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
291
diff
changeset
|
5625 self.assertEqual('1.2.840.10008.1.2.1', GetTransferSyntax(z.read(z.namelist()[0]))) |
|
e1827a4f5d3b
test_archive_transcode
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
291
diff
changeset
|
5626 |
|
e1827a4f5d3b
test_archive_transcode
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
291
diff
changeset
|
5627 self.assertRaises(Exception, lambda: DoGet(_REMOTE, '/patients/%s/archive?transcode=nope' % info['ParentPatient'])) |
|
e1827a4f5d3b
test_archive_transcode
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
291
diff
changeset
|
5628 |
|
e1827a4f5d3b
test_archive_transcode
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
291
diff
changeset
|
5629 z = GetArchive(_REMOTE, '/patients/%s/archive?transcode=1.2.840.10008.1.2' % info['ParentPatient']) |
|
e1827a4f5d3b
test_archive_transcode
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
291
diff
changeset
|
5630 self.assertEqual('1.2.840.10008.1.2', GetTransferSyntax(z.read(z.namelist()[0]))) |
|
e1827a4f5d3b
test_archive_transcode
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
291
diff
changeset
|
5631 |
|
e1827a4f5d3b
test_archive_transcode
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
291
diff
changeset
|
5632 z = GetArchive(_REMOTE, '/studies/%s/archive?transcode=1.2.840.10008.1.2.2' % info['ParentStudy']) |
|
e1827a4f5d3b
test_archive_transcode
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
291
diff
changeset
|
5633 self.assertEqual('1.2.840.10008.1.2.2', GetTransferSyntax(z.read(z.namelist()[0]))) |
|
e1827a4f5d3b
test_archive_transcode
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
291
diff
changeset
|
5634 |
|
e1827a4f5d3b
test_archive_transcode
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
291
diff
changeset
|
5635 z = GetArchive(_REMOTE, '/series/%s/archive?transcode=1.2.840.10008.1.2.4.70' % info['ParentSeries']) |
|
e1827a4f5d3b
test_archive_transcode
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
291
diff
changeset
|
5636 self.assertEqual('1.2.840.10008.1.2.4.70', GetTransferSyntax(z.read(z.namelist()[0]))) |
|
293
032722c3e919
extended test_archive_transcode
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
292
diff
changeset
|
5637 |
|
032722c3e919
extended test_archive_transcode
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
292
diff
changeset
|
5638 |
|
032722c3e919
extended test_archive_transcode
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
292
diff
changeset
|
5639 # POST on "/archive" |
|
032722c3e919
extended test_archive_transcode
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
292
diff
changeset
|
5640 self.assertRaises(Exception, lambda: PostArchive( |
|
032722c3e919
extended test_archive_transcode
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
292
diff
changeset
|
5641 _REMOTE, '/patients/%s/archive' % info['ParentPatient'], { 'Transcode' : 'nope' })) |
|
032722c3e919
extended test_archive_transcode
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
292
diff
changeset
|
5642 |
|
032722c3e919
extended test_archive_transcode
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
292
diff
changeset
|
5643 z = PostArchive(_REMOTE, '/patients/%s/archive' % info['ParentPatient'], { |
|
032722c3e919
extended test_archive_transcode
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
292
diff
changeset
|
5644 'Transcode' : '1.2.840.10008.1.2.4.50', |
|
032722c3e919
extended test_archive_transcode
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
292
diff
changeset
|
5645 }) |
|
032722c3e919
extended test_archive_transcode
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
292
diff
changeset
|
5646 self.assertEqual('1.2.840.10008.1.2.4.50', GetTransferSyntax(z.read(z.namelist()[0]))) |
|
032722c3e919
extended test_archive_transcode
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
292
diff
changeset
|
5647 |
|
032722c3e919
extended test_archive_transcode
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
292
diff
changeset
|
5648 z = PostArchive(_REMOTE, '/studies/%s/archive' % info['ParentStudy'], { |
|
032722c3e919
extended test_archive_transcode
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
292
diff
changeset
|
5649 'Transcode' : '1.2.840.10008.1.2.4.51', |
|
032722c3e919
extended test_archive_transcode
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
292
diff
changeset
|
5650 }) |
|
032722c3e919
extended test_archive_transcode
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
292
diff
changeset
|
5651 self.assertEqual('1.2.840.10008.1.2.4.51', GetTransferSyntax(z.read(z.namelist()[0]))) |
|
032722c3e919
extended test_archive_transcode
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
292
diff
changeset
|
5652 |
|
032722c3e919
extended test_archive_transcode
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
292
diff
changeset
|
5653 z = PostArchive(_REMOTE, '/series/%s/archive' % info['ParentSeries'], { |
|
032722c3e919
extended test_archive_transcode
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
292
diff
changeset
|
5654 'Transcode' : '1.2.840.10008.1.2.4.57', |
|
032722c3e919
extended test_archive_transcode
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
292
diff
changeset
|
5655 }) |
|
032722c3e919
extended test_archive_transcode
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
292
diff
changeset
|
5656 self.assertEqual('1.2.840.10008.1.2.4.57', GetTransferSyntax(z.read(z.namelist()[0]))) |
|
292
e1827a4f5d3b
test_archive_transcode
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
291
diff
changeset
|
5657 |
|
293
032722c3e919
extended test_archive_transcode
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
292
diff
changeset
|
5658 |
|
032722c3e919
extended test_archive_transcode
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
292
diff
changeset
|
5659 # "/tools/create-*" |
|
032722c3e919
extended test_archive_transcode
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
292
diff
changeset
|
5660 z = PostArchive(_REMOTE, '/tools/create-archive', { |
|
032722c3e919
extended test_archive_transcode
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
292
diff
changeset
|
5661 'Resources' : [ info['ParentStudy'] ], |
|
032722c3e919
extended test_archive_transcode
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
292
diff
changeset
|
5662 'Transcode' : '1.2.840.10008.1.2.4.50', |
|
032722c3e919
extended test_archive_transcode
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
292
diff
changeset
|
5663 }) |
|
032722c3e919
extended test_archive_transcode
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
292
diff
changeset
|
5664 self.assertEqual(1, len(z.namelist())) |
|
032722c3e919
extended test_archive_transcode
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
292
diff
changeset
|
5665 self.assertEqual('1.2.840.10008.1.2.4.50', GetTransferSyntax(z.read(z.namelist()[0]))) |
|
032722c3e919
extended test_archive_transcode
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
292
diff
changeset
|
5666 |
|
032722c3e919
extended test_archive_transcode
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
292
diff
changeset
|
5667 z = PostArchive(_REMOTE, '/tools/create-media', { |
|
032722c3e919
extended test_archive_transcode
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
292
diff
changeset
|
5668 'Resources' : [ info['ParentStudy'] ], |
|
032722c3e919
extended test_archive_transcode
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
292
diff
changeset
|
5669 'Transcode' : '1.2.840.10008.1.2.4.51', |
|
032722c3e919
extended test_archive_transcode
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
292
diff
changeset
|
5670 }) |
|
032722c3e919
extended test_archive_transcode
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
292
diff
changeset
|
5671 self.assertEqual(2, len(z.namelist())) |
|
032722c3e919
extended test_archive_transcode
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
292
diff
changeset
|
5672 self.assertEqual('1.2.840.10008.1.2.4.51', GetTransferSyntax(z.read('IMAGES/IM0'))) |
|
032722c3e919
extended test_archive_transcode
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
292
diff
changeset
|
5673 |
|
032722c3e919
extended test_archive_transcode
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
292
diff
changeset
|
5674 z = PostArchive(_REMOTE, '/tools/create-media-extended', { |
|
032722c3e919
extended test_archive_transcode
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
292
diff
changeset
|
5675 'Resources' : [ info['ParentStudy'] ], |
|
032722c3e919
extended test_archive_transcode
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
292
diff
changeset
|
5676 'Transcode' : '1.2.840.10008.1.2.4.57', |
|
032722c3e919
extended test_archive_transcode
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
292
diff
changeset
|
5677 }) |
|
032722c3e919
extended test_archive_transcode
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
292
diff
changeset
|
5678 self.assertEqual(2, len(z.namelist())) |
|
032722c3e919
extended test_archive_transcode
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
292
diff
changeset
|
5679 self.assertEqual('1.2.840.10008.1.2.4.57', GetTransferSyntax(z.read('IMAGES/IM0'))) |
|
032722c3e919
extended test_archive_transcode
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
292
diff
changeset
|
5680 |
| 308 | 5681 |
|
301
6652d5720a45
test_modify_keep_source
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
300
diff
changeset
|
5682 def test_modify_keep_source(self): |
|
6652d5720a45
test_modify_keep_source
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
300
diff
changeset
|
5683 # https://groups.google.com/d/msg/orthanc-users/CgU-Wg8vDio/BY5ZWcDEAgAJ |
|
6652d5720a45
test_modify_keep_source
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
300
diff
changeset
|
5684 i = UploadInstance(_REMOTE, 'DummyCT.dcm') |
|
6652d5720a45
test_modify_keep_source
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
300
diff
changeset
|
5685 self.assertEqual(1, len(DoGet(_REMOTE, '/studies'))) |
|
6652d5720a45
test_modify_keep_source
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
300
diff
changeset
|
5686 |
|
6652d5720a45
test_modify_keep_source
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
300
diff
changeset
|
5687 j = DoPost(_REMOTE, '/studies/%s/modify' % i['ParentStudy'], { |
|
6652d5720a45
test_modify_keep_source
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
300
diff
changeset
|
5688 'Replace' : { |
|
6652d5720a45
test_modify_keep_source
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
300
diff
changeset
|
5689 'StationName' : 'TEST', |
|
6652d5720a45
test_modify_keep_source
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
300
diff
changeset
|
5690 }, |
|
6652d5720a45
test_modify_keep_source
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
300
diff
changeset
|
5691 'KeepSource' : True, |
|
6652d5720a45
test_modify_keep_source
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
300
diff
changeset
|
5692 }) |
|
6652d5720a45
test_modify_keep_source
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
300
diff
changeset
|
5693 |
|
6652d5720a45
test_modify_keep_source
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
300
diff
changeset
|
5694 s = DoGet(_REMOTE, '/studies') |
|
6652d5720a45
test_modify_keep_source
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
300
diff
changeset
|
5695 self.assertEqual(2, len(s)) |
|
6652d5720a45
test_modify_keep_source
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
300
diff
changeset
|
5696 self.assertTrue(i['ParentStudy'] in s) |
|
6652d5720a45
test_modify_keep_source
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
300
diff
changeset
|
5697 self.assertTrue(j['ID'] in s) |
|
6652d5720a45
test_modify_keep_source
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
300
diff
changeset
|
5698 |
|
6652d5720a45
test_modify_keep_source
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
300
diff
changeset
|
5699 DoDelete(_REMOTE, '/studies/%s' % j['ID']) |
|
6652d5720a45
test_modify_keep_source
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
300
diff
changeset
|
5700 self.assertEqual(1, len(DoGet(_REMOTE, '/studies'))) |
|
6652d5720a45
test_modify_keep_source
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
300
diff
changeset
|
5701 |
|
6652d5720a45
test_modify_keep_source
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
300
diff
changeset
|
5702 j = DoPost(_REMOTE, '/studies/%s/modify' % i['ParentStudy'], { |
|
6652d5720a45
test_modify_keep_source
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
300
diff
changeset
|
5703 'Replace' : { |
|
6652d5720a45
test_modify_keep_source
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
300
diff
changeset
|
5704 'StationName' : 'TEST', |
|
6652d5720a45
test_modify_keep_source
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
300
diff
changeset
|
5705 }, |
|
6652d5720a45
test_modify_keep_source
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
300
diff
changeset
|
5706 'KeepSource' : False, |
|
6652d5720a45
test_modify_keep_source
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
300
diff
changeset
|
5707 }) |
|
6652d5720a45
test_modify_keep_source
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
300
diff
changeset
|
5708 |
|
6652d5720a45
test_modify_keep_source
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
300
diff
changeset
|
5709 s = DoGet(_REMOTE, '/studies') |
|
6652d5720a45
test_modify_keep_source
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
300
diff
changeset
|
5710 self.assertEqual(1, len(s)) |
|
6652d5720a45
test_modify_keep_source
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
300
diff
changeset
|
5711 self.assertFalse(i['ParentStudy'] in s) |
|
6652d5720a45
test_modify_keep_source
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
300
diff
changeset
|
5712 self.assertTrue(j['ID'] in s) |
|
302
22b6dd0f8c84
test_modify_transcode_study
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
301
diff
changeset
|
5713 |
|
22b6dd0f8c84
test_modify_transcode_study
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
301
diff
changeset
|
5714 |
|
22b6dd0f8c84
test_modify_transcode_study
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
301
diff
changeset
|
5715 def test_modify_transcode_study(self): |
|
22b6dd0f8c84
test_modify_transcode_study
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
301
diff
changeset
|
5716 i = UploadInstance(_REMOTE, 'KarstenHilbertRF.dcm') |
|
22b6dd0f8c84
test_modify_transcode_study
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
301
diff
changeset
|
5717 self.assertEqual('1.2.840.10008.1.2.1', GetTransferSyntax( |
|
22b6dd0f8c84
test_modify_transcode_study
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
301
diff
changeset
|
5718 DoGet(_REMOTE, '/instances/%s/file' % i['ID']))) |
|
22b6dd0f8c84
test_modify_transcode_study
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
301
diff
changeset
|
5719 |
|
22b6dd0f8c84
test_modify_transcode_study
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
301
diff
changeset
|
5720 self.assertEqual(1, len(DoGet(_REMOTE, '/instances'))) |
|
22b6dd0f8c84
test_modify_transcode_study
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
301
diff
changeset
|
5721 j = DoPost(_REMOTE, '/studies/%s/modify' % i['ParentStudy'], { |
|
22b6dd0f8c84
test_modify_transcode_study
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
301
diff
changeset
|
5722 'Transcode' : '1.2.840.10008.1.2.4.50', |
|
22b6dd0f8c84
test_modify_transcode_study
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
301
diff
changeset
|
5723 'KeepSource' : False |
|
22b6dd0f8c84
test_modify_transcode_study
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
301
diff
changeset
|
5724 }) |
|
22b6dd0f8c84
test_modify_transcode_study
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
301
diff
changeset
|
5725 |
|
22b6dd0f8c84
test_modify_transcode_study
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
301
diff
changeset
|
5726 k = DoGet(_REMOTE, '/instances') |
|
22b6dd0f8c84
test_modify_transcode_study
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
301
diff
changeset
|
5727 self.assertEqual(1, len(k)) |
|
22b6dd0f8c84
test_modify_transcode_study
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
301
diff
changeset
|
5728 self.assertEqual(i['ID'], DoGet(_REMOTE, '/instances/%s/metadata?expand' % k[0]) ['ModifiedFrom']) |
|
22b6dd0f8c84
test_modify_transcode_study
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
301
diff
changeset
|
5729 self.assertEqual('1.2.840.10008.1.2.4.50', GetTransferSyntax( |
|
22b6dd0f8c84
test_modify_transcode_study
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
301
diff
changeset
|
5730 DoGet(_REMOTE, '/instances/%s/file' % k[0]))) |
|
22b6dd0f8c84
test_modify_transcode_study
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
301
diff
changeset
|
5731 |
|
305
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5732 |
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5733 def test_store_peer_transcoding(self): |
|
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5734 i = UploadInstance(_REMOTE, 'KarstenHilbertRF.dcm')['ID'] |
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5735 |
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5736 SYNTAXES = [ |
|
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5737 '1.2.840.10008.1.2', |
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5738 '1.2.840.10008.1.2.1', |
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5739 #'1.2.840.10008.1.2.1.99', # Deflated Explicit VR Little Endian (cannot be decoded in debug mode if Orthanc is statically linked against DCMTK 3.6.5) |
|
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5740 '1.2.840.10008.1.2.2', |
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5741 '1.2.840.10008.1.2.4.50', |
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5742 '1.2.840.10008.1.2.4.51', |
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5743 '1.2.840.10008.1.2.4.57', |
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5744 '1.2.840.10008.1.2.4.70', |
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5745 ] |
|
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5746 |
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5747 if HasGdcmPlugin(_REMOTE): |
|
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5748 SYNTAXES = SYNTAXES + [ |
|
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5749 '1.2.840.10008.1.2.4.80', # This makes DCMTK 3.6.2 crash |
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5750 '1.2.840.10008.1.2.4.81', # This makes DCMTK 3.6.2 crash |
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5751 '1.2.840.10008.1.2.4.90', # JPEG2k, unavailable without GDCM |
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5752 '1.2.840.10008.1.2.4.91', # JPEG2k, unavailable without GDCM |
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5753 ] |
|
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|
5754 |
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|
5755 for syntax in SYNTAXES: |
|
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|
5756 body = { |
|
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5757 'Resources' : [ i ], |
|
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5758 } |
|
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|
5759 |
|
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|
5760 if syntax != '1.2.840.10008.1.2.1': |
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|
5761 body['Transcode'] = syntax |
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|
5762 |
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5763 self.assertEqual(0, len(DoGet(_LOCAL, '/instances'))) |
|
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5764 self.assertEqual(1, len(DoGet(_REMOTE, '/instances'))) |
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|
5765 DoPost(_REMOTE, '/peers/peer/store', body, 'text/plain') |
|
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|
5766 self.assertEqual(1, len(DoGet(_LOCAL, '/instances'))) |
|
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|
5767 self.assertEqual(1, len(DoGet(_REMOTE, '/instances'))) |
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|
5768 self.assertEqual(syntax, GetTransferSyntax( |
|
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|
5769 DoGet(_LOCAL, '/instances/%s/file' % DoGet(_LOCAL, '/instances') [0]))) |
|
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|
5770 |
|
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|
5771 DropOrthanc(_LOCAL) |
| 308 | 5772 |
| 5773 | |
| 295 | 5774 def test_getscu(self): |
| 307 | 5775 def CleanTarget(): |
| 5776 if os.path.isdir('/tmp/GETSCU'): | |
| 5777 shutil.rmtree('/tmp/GETSCU') | |
| 5778 os.makedirs('/tmp/GETSCU') | |
| 5779 | |
|
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|
5780 env = {} |
|
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|
5781 if _DOCKER: |
|
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|
5782 # This is "getscu" from DCMTK 3.6.5 compiled using LSB, |
|
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|
5783 # and running in a GNU/Linux distribution running DCMTK |
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|
5784 # 3.6.0. Tell "getscu" where it can find the DICOM dictionary. |
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|
5785 env['DCMDICTPATH'] = '/usr/share/libdcmtk2/dicom.dic' |
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|
5786 |
| 295 | 5787 # no transcoding required |
| 307 | 5788 UploadInstance(_REMOTE, 'Brainix/Flair/IM-0001-0001.dcm')['ID'] |
| 5789 | |
| 5790 CleanTarget() | |
| 295 | 5791 |
|
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|
5792 subprocess.check_call([ |
|
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|
5793 FindExecutable('getscu'), |
|
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|
5794 _REMOTE['Server'], |
|
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|
5795 str(_REMOTE['DicomPort']), |
|
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|
5796 '-aec', 'ORTHANC', |
|
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|
5797 '-aet', 'ORTHANCTEST', # pretend to be the other orthanc |
| 307 | 5798 '-k', '0020,000d=2.16.840.1.113669.632.20.1211.10000357775', |
|
306
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|
5799 '-k', '0008,0052=STUDY', |
|
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|
5800 '--output-directory', '/tmp/GETSCU/' |
|
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|
5801 ], env = env) |
| 295 | 5802 |
| 311 | 5803 f1 = '/tmp/GETSCU/MR.1.3.46.670589.11.0.0.11.4.2.0.8743.5.5396.2006120114314079549' |
| 5804 self.assertTrue(os.path.isfile(f1)) | |
| 5805 with open(f1, 'rb') as f: | |
| 5806 self.assertEqual('1.2.840.10008.1.2.1', GetTransferSyntax(f.read())) | |
| 5807 | |
| 307 | 5808 CleanTarget() |
| 295 | 5809 |
| 5810 # transcoding required | |
| 311 | 5811 UploadInstance(_REMOTE, 'TransferSyntaxes/1.2.840.10008.1.2.4.50.dcm') |
| 307 | 5812 |
| 5813 subprocess.check_call([ | |
| 5814 FindExecutable('getscu'), | |
| 5815 _REMOTE['Server'], | |
| 5816 str(_REMOTE['DicomPort']), | |
| 5817 '-aec', 'ORTHANC', | |
| 5818 '-aet', 'ORTHANCTEST', # pretend to be the other orthanc | |
| 311 | 5819 '-k', '0020,000d=2.16.840.1.113669.632.20.1211.10000357775\\1.2.840.113663.1298.6234813.1.298.20000329.1115122', |
| 307 | 5820 '-k', '0008,0052=STUDY', |
| 5821 '--output-directory', '/tmp/GETSCU/' | |
| 5822 ], env = env) | |
| 5823 | |
| 311 | 5824 self.assertTrue(os.path.isfile(f1)) |
| 5825 with open(f1, 'rb') as f: | |
| 5826 self.assertEqual('1.2.840.10008.1.2.1', GetTransferSyntax(f.read())) | |
| 5827 | |
| 5828 # This file is transcoded from "1.2.840.10008.1.2.4.50" to "1.2.840.10008.1.2.1" | |
| 5829 # (LittleEndianExplicit is proposed by default by "getscu") | |
| 5830 f2 = '/tmp/GETSCU/US.1.2.840.113663.1298.1.3.715.20000329.1115326' | |
| 5831 self.assertTrue(os.path.isfile(f2)) | |
| 5832 with open(f2, 'rb') as f: | |
| 5833 self.assertEqual('1.2.840.10008.1.2.1', GetTransferSyntax(f.read())) | |
|
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|
5834 |
|
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|
5835 |
|
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|
5836 def test_findscu_truncation(self): |
|
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|
5837 # https://groups.google.com/forum/#!msg/orthanc-users/FkckWAHvso8/UbRBAhQ5CwAJ |
|
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|
5838 # Fixed by: https://hg.orthanc-server.com/orthanc/rev/2724977419fb |
|
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|
5839 UploadInstance(_REMOTE, 'Multiframe.dcm') |
|
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|
5840 UploadInstance(_REMOTE, 'ColorTestImageJ.dcm') |
|
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|
5841 |
|
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|
5842 study = '1.3.46.670589.7.5.8.80001255161.20000323.151537.1' |
|
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|
5843 |
|
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|
5844 i = CallFindScu([ '-k', '0008,0052=STUDY', '-k', 'StudyInstanceUID' ]) |
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|
5845 result = re.findall('\(0020,000d\).*?\[(.*?)\]', i) |
|
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|
5846 self.assertEqual(2, len(result)) |
|
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|
5847 |
|
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|
5848 # The "StudyInstanceUID" is set as a list of 5 times the same |
|
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|
5849 # study, leading to a string of 249 characters |
|
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|
5850 i = CallFindScu([ '-k', '0008,0052=STUDY', '-k', |
|
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|
5851 'StudyInstanceUID=%s\\%s\\%s\\%s\\%s' % (( study, ) * 5) ]) |
|
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|
5852 result = re.findall('\(0020,000d\).*?\[(.*?)\]', i) |
|
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|
5853 self.assertEqual(1, len(result)) |
|
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|
5854 |
|
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|
5855 # The "StudyInstanceUID" is set as a list of 6 times the same |
|
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5856 # study, leading to a string of 299 characters. In Orthanc <= |
|
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|
5857 # 1.7.2, this is above the value of ORTHANC_MAXIMUM_TAG_LENGTH |
|
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|
5858 # == 256, and is thus wiped out by C-FIND SCP. As a |
|
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|
5859 # consequence, Orthanc <= 1.7.2 doesn't apply the filter on |
|
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|
5860 # "StudyInstanceUID" and returns all the available |
|
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5861 # studies (i.e. 2). This issue was fixed in Orthanc 1.7.3. |
|
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|
5862 i = CallFindScu([ '-k', '0008,0052=STUDY', '-k', |
|
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|
5863 'StudyInstanceUID=%s\\%s\\%s\\%s\\%s\\%s' % (( study, ) * 6) ]) |
|
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|
5864 result = re.findall('\(0020,000d\).*?\[(.*?)\]', i) |
|
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|
5865 self.assertEqual(1, len(result)) |
|
328
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|
5866 |
|
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|
5867 |
|
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5868 def test_store_compressed(self): |
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5869 with open(GetDatabasePath('DummyCT.dcm'), 'rb') as f: |
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5870 dicom = f.read() |
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5871 i = DoPost(_REMOTE, '/instances', dicom) ['ID'] |
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5872 sourceSize = len(dicom) |
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5873 |
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5874 self.assertEqual(0, len(DoGet(_LOCAL, '/instances'))) |
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5875 self.assertEqual(1, len(DoGet(_REMOTE, '/instances'))) |
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5876 |
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5877 # Sending to the local Orthanc 0.8.6 server, without compression: OK |
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5878 jobId = MonitorJob2(_REMOTE, lambda: DoPost( |
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5879 _REMOTE, '/peers/peer/store', { |
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5880 'Resources' : [ i ], |
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5881 'Synchronous' : False, |
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5882 })) |
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5883 |
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5884 job = DoGet(_REMOTE, '/jobs/%s' % jobId) |
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5885 self.assertFalse(job['Content']['Compress']) |
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5886 self.assertEqual('', job['Content']['Peer'][2]) # Password must not be reported |
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5887 self.assertEqual(str(sourceSize), job['Content']['Size']) |
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5888 |
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5889 self.assertEqual(1, len(DoGet(_LOCAL, '/instances'))) |
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5890 DropOrthanc(_LOCAL) |
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5891 |
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5892 # Sending to the local Orthanc 0.8.6 server, with compression: |
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5893 # Not supported by Orthanc 0.8.6 => failure |
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5894 self.assertRaises(Exception, lambda: DoPost(_REMOTE, '/peers/peer/store', { |
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5895 'Resources' : [ i ], |
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5896 'Compress' : True, |
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5897 })) |
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5898 self.assertEqual(0, len(DoGet(_LOCAL, '/instances'))) |
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5899 |
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5900 # Sending to the tested remote server, with compression: OK |
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5901 jobId = MonitorJob2(_REMOTE, lambda: DoPost( |
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5902 _REMOTE, '/peers/self/store', { |
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5903 'Resources' : [ i ], |
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5904 'Compress' : True, |
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5905 'Synchronous' : False, |
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5906 })) |
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5907 |
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5908 job = DoGet(_REMOTE, '/jobs/%s' % jobId) |
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5909 self.assertTrue(job['Content']['Compress']) |
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5910 |
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5911 # Compression must have divided the size of the sent data at least twice |
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5912 self.assertLess(int(job['Content']['Size']), sourceSize / 2) |