Mercurial > hg > orthanc-tests
annotate Tests/Tests.py @ 290:b5333f87065b
test_bitbucket_issue_169
author | Sebastien Jodogne <s.jodogne@gmail.com> |
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date | Thu, 07 May 2020 11:37:42 +0200 |
parents | 4a70411ac9ad |
children | cfa785074c64 |
rev | line source |
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22 | 1 #!/usr/bin/env python |
2 # -*- coding: utf-8 -*- | |
3 | |
4 | |
3 | 5 # Orthanc - A Lightweight, RESTful DICOM Store |
73 | 6 # Copyright (C) 2012-2016 Sebastien Jodogne, Medical Physics |
3 | 7 # Department, University Hospital of Liege, Belgium |
260
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8 # Copyright (C) 2017-2020 Osimis S.A., Belgium |
3 | 9 # |
10 # This program is free software: you can redistribute it and/or | |
11 # modify it under the terms of the GNU General Public License as | |
12 # published by the Free Software Foundation, either version 3 of the | |
13 # License, or (at your option) any later version. | |
14 # | |
15 # This program is distributed in the hope that it will be useful, but | |
16 # WITHOUT ANY WARRANTY; without even the implied warranty of | |
17 # MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU | |
18 # General Public License for more details. | |
19 # | |
20 # You should have received a copy of the GNU General Public License | |
21 # along with this program. If not, see <http://www.gnu.org/licenses/>. | |
22 | |
23 | |
202
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24 import base64 |
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25 import bz2 |
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26 import copy |
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27 import pprint |
14 | 28 import tempfile |
3 | 29 import unittest |
30 | |
11 | 31 from PIL import ImageChops |
3 | 32 from Toolbox import * |
13 | 33 from xml.dom import minidom |
3 | 34 |
35 _LOCAL = None | |
36 _REMOTE = None | |
37 | |
38 | |
39 def SetOrthancParameters(local, remote): | |
40 global _LOCAL, _REMOTE | |
41 _LOCAL = local | |
42 _REMOTE = remote | |
43 | |
44 | |
14 | 45 def ExtractDicomTags(rawDicom, tags): |
46 with tempfile.NamedTemporaryFile(delete = True) as f: | |
47 f.write(rawDicom) | |
48 f.flush() | |
45 | 49 data = subprocess.check_output([ FindExecutable('dcm2xml'), f.name ]) |
14 | 50 |
51 result = [] | |
52 for tag in tags: | |
53 match = re.search('<element[^>]+name="%s">([^>]*)</element>' % tag, data) | |
54 if match == None: | |
55 result.append('') | |
56 else: | |
57 result.append(match.group(1)) | |
58 | |
59 return result | |
60 | |
61 | |
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62 def CompareLists(a, b): |
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63 if len(a) != len(b): |
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64 return False |
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65 |
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66 for i in range(len(a)): |
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67 d = a[i] - b[i] |
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68 if abs(d) >= 0.51: # Add some tolerance for rounding errors |
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69 return False |
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70 |
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71 return True |
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72 |
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73 |
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74 def CompareTags(a, b, tagsToIgnore): |
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75 for i in tagsToIgnore: |
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76 if i in a: |
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77 del a[i] |
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78 if i in b: |
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79 del b[i] |
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80 |
123 | 81 if a.keys() == b.keys(): |
82 return True | |
83 else: | |
84 print('Mismatch in tags: %s' % str(set(a.keys()) ^ set(b.keys()))) | |
85 return False | |
80
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86 |
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87 |
71
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88 def CallFindScu(args): |
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89 p = subprocess.Popen([ FindExecutable('findscu'), |
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90 '-P', '-aec', _REMOTE['DicomAet'], '-aet', _LOCAL['DicomAet'], |
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91 _REMOTE['Server'], str(_REMOTE['DicomPort']) ] + args, |
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92 stderr=subprocess.PIPE) |
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93 return p.communicate()[1] |
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94 |
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95 |
142 | 96 def GetMoveScuCommand(): |
97 return [ | |
98 FindExecutable('movescu'), | |
99 '--move', _LOCAL['DicomAet'], # Target AET (i.e. storescp) | |
100 '--call', _REMOTE['DicomAet'], # Called AET (i.e. Orthanc) | |
101 '--aetitle', _LOCAL['DicomAet'], # Calling AET (i.e. storescp) | |
102 _REMOTE['Server'], | |
103 str(_REMOTE['DicomPort']) | |
104 ] | |
105 | |
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106 |
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107 def CallMoveScu(args): |
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108 try: |
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109 subprocess.check_call(GetMoveScuCommand() + args, |
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110 stderr=subprocess.PIPE) |
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111 except subprocess.CalledProcessError as e: |
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112 # The error code "69" corresponds to "EXITCODE_CMOVE_ERROR", |
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113 # that has been introduced in DCMTK 3.6.2. This error code is |
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114 # expected by some tests that try and C-MOVE non-existing |
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115 # DICOM instances. |
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116 # https://groups.google.com/d/msg/orthanc-users/DCRc5NeSCbM/DG-pSWj-BwAJ |
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117 if e.returncode != 69: |
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118 raise e |
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119 |
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120 |
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121 def GenerateTestSequence(): |
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122 return [ |
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123 { |
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124 'StudyDescription': 'Hello^', |
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125 'ReferencedStudySequence' : [ |
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126 { |
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127 'StudyDescription': 'Toto', |
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128 }, |
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129 { |
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130 'StudyDescription': 'Tata', |
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131 }, |
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132 ] |
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133 }, |
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134 { |
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135 'StudyDescription': 'Sébastien^', |
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136 'StudyDate' : '19700202', |
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137 } |
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138 ] |
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139 |
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140 |
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141 |
15 | 142 |
3 | 143 class Orthanc(unittest.TestCase): |
144 def setUp(self): | |
83 | 145 if (sys.version_info >= (3, 0)): |
146 # Remove annoying warnings about unclosed socket in Python 3 | |
147 import warnings | |
148 warnings.simplefilter("ignore", ResourceWarning) | |
149 | |
3 | 150 DropOrthanc(_LOCAL) |
151 DropOrthanc(_REMOTE) | |
174 | 152 UninstallLuaCallbacks(_REMOTE) |
45 | 153 #print "In test", self._testMethodName |
44
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154 |
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155 def AssertSameImages(self, truth, url): |
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156 im = GetImage(_REMOTE, url) |
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157 self.assertTrue(CompareLists(truth, im.getdata())) |
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158 |
3 | 159 |
160 def test_system(self): | |
177 | 161 self.assertTrue('Version' in DoGet(_REMOTE, '/system')) |
162 self.assertEqual('0', DoGet(_REMOTE, '/statistics')['TotalDiskSize']) | |
163 self.assertEqual('0', DoGet(_REMOTE, '/statistics')['TotalUncompressedSize']) | |
164 | |
165 systemInfo = DoGet(_REMOTE, '/system') | |
166 if systemInfo["Version"] == "mainline": | |
167 print "Skipping version checks since you're currently in mainline" | |
168 return | |
169 | |
173 | 170 self.assertTrue(IsOrthancVersionAbove(_LOCAL, 0, 8, 6)) |
171 self.assertFalse(IsOrthancVersionAbove(_LOCAL, 0, 8, 7)) | |
172 self.assertTrue(IsOrthancVersionAbove(_LOCAL, 0, 7, 6)) | |
173 self.assertFalse(IsOrthancVersionAbove(_LOCAL, 0, 9, 6)) | |
174 self.assertFalse(IsOrthancVersionAbove(_LOCAL, 1, 8, 6)) | |
3 | 175 |
176 def test_upload(self): | |
173 | 177 self.assertEqual('0', DoGet(_REMOTE, '/statistics')['TotalDiskSize']) |
178 self.assertEqual('0', DoGet(_REMOTE, '/statistics')['TotalUncompressedSize']) | |
179 | |
180 sizeDummyCT = 2472 | |
181 sizeOverwrite = 2476 | |
182 instance = '66a662ce-7430e543-bad44d47-0dc5a943-ec7a538d' | |
183 | |
3 | 184 u = UploadInstance(_REMOTE, 'DummyCT.dcm') |
183 | 185 self.assertEqual(instance, u['ID']) |
3 | 186 self.assertEqual('Success', u['Status']) |
173 | 187 |
183 | 188 if True: |
189 # New test for Orthanc 1.4.3 | |
190 self.assertEqual('f2635388-f01d497a-15f7c06b-ad7dba06-c4c599fe', u['ParentSeries']) | |
191 self.assertEqual('b9c08539-26f93bde-c81ab0d7-bffaf2cb-a4d0bdd0', u['ParentStudy']) | |
192 self.assertEqual('6816cb19-844d5aee-85245eba-28e841e6-2414fae2', u['ParentPatient']) | |
193 | |
173 | 194 j = int(DoGet(_REMOTE, '/instances/%s/attachments/dicom-as-json/size' % instance)) |
195 s = sizeDummyCT + j | |
196 self.assertEqual('%d' % s, DoGet(_REMOTE, '/statistics')['TotalDiskSize']) | |
197 self.assertEqual('%d' % s, DoGet(_REMOTE, '/statistics')['TotalUncompressedSize']) | |
198 | |
3 | 199 u = UploadInstance(_REMOTE, 'DummyCT.dcm') |
200 self.assertEqual(1, len(DoGet(_REMOTE, '/patients'))) | |
201 self.assertEqual(1, len(DoGet(_REMOTE, '/studies'))) | |
202 self.assertEqual(1, len(DoGet(_REMOTE, '/series'))) | |
203 self.assertEqual(1, len(DoGet(_REMOTE, '/instances'))) | |
173 | 204 self.assertEqual('%d' % s, DoGet(_REMOTE, '/statistics')['TotalDiskSize']) |
205 self.assertEqual('%d' % s, DoGet(_REMOTE, '/statistics')['TotalUncompressedSize']) | |
206 | |
207 i = DoGet(_REMOTE, '/instances/%s/simplified-tags' % instance) | |
3 | 208 self.assertEqual('20070101', i['StudyDate']) |
173 | 209 self.assertEqual('KNIX', i['PatientName']) |
210 | |
211 if IsOrthancVersionAbove(_REMOTE, 1, 4, 2): | |
212 # Overwriting | |
213 self.assertEqual('Success', u['Status']) | |
214 else: | |
215 self.assertEqual('AlreadyStored', u['Status']) | |
216 | |
217 u = UploadInstance(_REMOTE, 'DummyCT-overwrite.dcm') | |
218 self.assertEqual(1, len(DoGet(_REMOTE, '/patients'))) | |
219 self.assertEqual(1, len(DoGet(_REMOTE, '/studies'))) | |
220 self.assertEqual(1, len(DoGet(_REMOTE, '/series'))) | |
221 self.assertEqual(1, len(DoGet(_REMOTE, '/instances'))) | |
222 | |
223 if IsOrthancVersionAbove(_REMOTE, 1, 4, 2): | |
224 # Overwriting | |
225 self.assertEqual('Success', u['Status']) | |
226 j2 = int(DoGet(_REMOTE, '/instances/%s/attachments/dicom-as-json/size' % instance)) | |
227 s2 = sizeOverwrite + j2 | |
228 self.assertNotEqual(s, s2) | |
229 self.assertNotEqual(j, j2) | |
230 self.assertEqual('%d' % s2, DoGet(_REMOTE, '/statistics')['TotalDiskSize']) | |
231 self.assertEqual('%d' % s2, DoGet(_REMOTE, '/statistics')['TotalUncompressedSize']) | |
232 i = DoGet(_REMOTE, '/instances/%s/simplified-tags' % instance) | |
233 self.assertEqual('ANOTHER', i['PatientName']) | |
234 else: | |
235 self.assertEqual('AlreadyStored', u['Status']) | |
236 self.assertEqual('%d' % s, DoGet(_REMOTE, '/statistics')['TotalDiskSize']) | |
237 self.assertEqual('%d' % s, DoGet(_REMOTE, '/statistics')['TotalUncompressedSize']) | |
3 | 238 |
5 | 239 def test_upload_2(self): |
3 | 240 i = UploadInstance(_REMOTE, 'DummyCT.dcm')['ID'] |
241 instance = DoGet(_REMOTE, '/instances/%s' % i) | |
242 self.assertEqual(i, instance['ID']) | |
243 self.assertEqual('1.2.840.113619.2.176.2025.1499492.7040.1171286242.109', | |
244 instance['MainDicomTags']['SOPInstanceUID']) | |
245 | |
246 series = DoGet(_REMOTE, '/series/%s' % instance['ParentSeries']) | |
247 self.assertEqual('1.2.840.113619.2.176.2025.1499492.7391.1171285944.394', | |
248 series['MainDicomTags']['SeriesInstanceUID']) | |
249 | |
250 study = DoGet(_REMOTE, '/studies/%s' % series['ParentStudy']) | |
251 self.assertEqual('1.2.840.113619.2.176.2025.1499492.7391.1171285944.390', | |
252 study['MainDicomTags']['StudyInstanceUID']) | |
253 | |
254 patient = DoGet(_REMOTE, '/patients/%s' % study['ParentPatient']) | |
255 self.assertEqual('ozp00SjY2xG', | |
256 patient['MainDicomTags']['PatientID']) | |
257 | |
258 dicom = DoGet(_REMOTE, '/instances/%s/file' % instance['ID']) | |
259 self.assertEqual(2472, len(dicom)) | |
260 self.assertEqual('3e29b869978b6db4886355a2b1132124', ComputeMD5(dicom)) | |
261 self.assertEqual(1, len(DoGet(_REMOTE, '/instances/%s/frames' % i))) | |
262 self.assertEqual('TWINOW', DoGet(_REMOTE, '/instances/%s/simplified-tags' % i)['StationName']) | |
263 self.assertEqual('TWINOW', DoGet(_REMOTE, '/instances/%s/tags' % i)['0008,1010']['Value']) | |
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264 self.assertEqual('TWINOW', DoGet(_REMOTE, '/instances/%s/tags?simplify' % i)['StationName']) |
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265 self.assertEqual('TWINOW', DoGet(_REMOTE, '/instances/%s/tags?short' % i)['0008,1010']) |
3 | 266 |
267 | |
5 | 268 def test_images(self): |
269 i = UploadInstance(_REMOTE, 'Phenix/IM-0001-0001.dcm')['ID'] | |
270 self.assertEqual(1, len(DoGet(_REMOTE, '/instances/%s/frames' % i))) | |
3 | 271 |
5 | 272 im = GetImage(_REMOTE, '/instances/%s/preview' % i) |
273 self.assertEqual("L", im.mode) | |
274 self.assertEqual(512, im.size[0]) | |
275 self.assertEqual(358, im.size[1]) | |
276 | |
277 im = GetImage(_REMOTE, '/instances/%s/image-uint8' % i) | |
278 self.assertEqual("L", im.mode) | |
279 self.assertEqual(512, im.size[0]) | |
280 self.assertEqual(358, im.size[1]) | |
281 | |
282 im = GetImage(_REMOTE, '/instances/%s/image-uint16' % i) | |
283 self.assertEqual(512, im.size[0]) | |
284 self.assertEqual(358, im.size[1]) | |
285 | |
286 im = GetImage(_REMOTE, '/instances/%s/frames/0/preview' % i) | |
287 self.assertEqual("L", im.mode) | |
288 self.assertEqual(512, im.size[0]) | |
289 self.assertEqual(358, im.size[1]) | |
290 | |
291 im = GetImage(_REMOTE, '/instances/%s/frames/0/image-uint8' % i) | |
292 self.assertEqual("L", im.mode) | |
293 self.assertEqual(512, im.size[0]) | |
294 self.assertEqual(358, im.size[1]) | |
295 | |
296 im = GetImage(_REMOTE, '/instances/%s/frames/0/image-uint16' % i) | |
297 self.assertEqual(512, im.size[0]) | |
298 self.assertEqual(358, im.size[1]) | |
64 | 299 |
300 # This is Little Endian Explicit | |
301 self.assertEqual('1.2.840.10008.1.2.1', DoGet(_REMOTE, '/instances/%s/header?simplify' % i)['TransferSyntaxUID']) | |
302 | |
6 | 303 |
304 def test_hierarchy(self): | |
305 UploadFolder(_REMOTE, 'Brainix/Epi') | |
306 UploadFolder(_REMOTE, 'Brainix/Flair') | |
307 UploadFolder(_REMOTE, 'Knee/T1') | |
308 UploadFolder(_REMOTE, 'Knee/T2') | |
309 | |
310 p = DoGet(_REMOTE, '/patients') | |
311 s = DoGet(_REMOTE, '/studies') | |
312 t = DoGet(_REMOTE, '/series') | |
313 self.assertEqual(2, len(p)) | |
314 self.assertEqual(2, len(s)) | |
315 self.assertEqual(4, len(t)) | |
316 self.assertEqual(94, len(DoGet(_REMOTE, '/instances'))) | |
317 | |
318 brainixPatient = '16738bc3-e47ed42a-43ce044c-a3414a45-cb069bd0' | |
319 brainixStudy = '27f7126f-4f66fb14-03f4081b-f9341db2-53925988' | |
320 brainixEpi = '2ac1316d-3e432022-62eabff2-c59f5475-9b1ac3f8' | |
321 brainixFlair = '1e2c125c-411b8e86-3f4fe68e-a7584dd3-c6da78f0' | |
322 | |
323 kneePatient = 'ca29faea-b6a0e17f-067743a1-8b778011-a48b2a17' | |
324 kneeStudy = '0a9b3153-2512774b-2d9580de-1fc3dcf6-3bd83918' | |
325 kneeT1 = '6de73705-c4e65c1b-9d9ea1b5-cabcd8e7-f15e4285' | |
326 kneeT2 = 'bbf7a453-0d34251a-03663b55-46bb31b9-ffd74c59' | |
327 | |
328 self.assertTrue(brainixPatient in p) | |
329 self.assertTrue(kneePatient in p) | |
330 self.assertTrue(brainixStudy in s) | |
331 self.assertTrue(kneeStudy in s) | |
332 self.assertTrue(brainixEpi in t) | |
333 self.assertTrue(brainixFlair in t) | |
334 self.assertTrue(kneeT1 in t) | |
335 self.assertTrue(kneeT2 in t) | |
336 | |
337 self.assertEqual(44, len(DoGet(_REMOTE, '/patients/%s/instances' % brainixPatient))) | |
338 self.assertEqual(2, len(DoGet(_REMOTE, '/patients/%s/series' % brainixPatient))) | |
339 self.assertEqual(1, len(DoGet(_REMOTE, '/patients/%s/studies' % brainixPatient))) | |
340 | |
341 self.assertEqual(50, len(DoGet(_REMOTE, '/patients/%s/instances' % kneePatient))) | |
342 self.assertEqual(2, len(DoGet(_REMOTE, '/patients/%s/series' % kneePatient))) | |
343 self.assertEqual(1, len(DoGet(_REMOTE, '/patients/%s/studies' % kneePatient))) | |
344 | |
345 self.assertEqual(2, len(DoGet(_REMOTE, '/studies/%s/series' % brainixStudy))) | |
346 self.assertEqual(44, len(DoGet(_REMOTE, '/studies/%s/instances' % brainixStudy))) | |
347 | |
348 self.assertEqual(2, len(DoGet(_REMOTE, '/studies/%s/series' % kneeStudy))) | |
349 self.assertEqual(50, len(DoGet(_REMOTE, '/studies/%s/instances' % kneeStudy))) | |
350 | |
351 self.assertEqual(22, len(DoGet(_REMOTE, '/series/%s/instances' % brainixEpi))) | |
352 self.assertEqual(22, len(DoGet(_REMOTE, '/series/%s/instances' % brainixFlair))) | |
353 self.assertEqual(24, len(DoGet(_REMOTE, '/series/%s/instances' % kneeT1))) | |
354 self.assertEqual(26, len(DoGet(_REMOTE, '/series/%s/instances' % kneeT2))) | |
355 | |
356 for patient in p: | |
357 for study in DoGet(_REMOTE, '/patients/%s/studies' % patient): | |
358 self.assertEqual(patient, study['ParentPatient']) | |
359 for series in DoGet(_REMOTE, '/studies/%s/series' % study['ID']): | |
360 self.assertEqual(study['ID'], series['ParentStudy']) | |
211 | 361 self.assertEqual('Unknown', series['Status']) |
6 | 362 for instance in DoGet(_REMOTE, '/series/%s/instances' % series['ID']): |
363 self.assertEqual(series['ID'], instance['ParentSeries']) | |
364 | |
365 self.assertEqual(json.dumps(DoGet(_REMOTE, '/instances/%s/attachments/dicom-as-json/data' % instance['ID'])), | |
366 json.dumps(DoGet(_REMOTE, '/instances/%s/tags' % instance['ID']))) | |
367 | |
368 | |
369 r = DoDelete(_REMOTE, "/studies/%s" % brainixStudy)['RemainingAncestor'] | |
370 self.assertEqual(1, len(DoGet(_REMOTE, '/patients'))) | |
371 self.assertEqual(1, len(DoGet(_REMOTE, '/studies'))) | |
372 self.assertEqual(2, len(DoGet(_REMOTE, '/series'))) | |
373 self.assertEqual(50, len(DoGet(_REMOTE, '/instances'))) | |
374 self.assertEqual(None, r) | |
375 | |
376 r = DoDelete(_REMOTE, "/series/%s" % kneeT2)['RemainingAncestor'] | |
377 self.assertEqual(1, len(DoGet(_REMOTE, '/patients'))) | |
378 self.assertEqual(1, len(DoGet(_REMOTE, '/studies'))) | |
379 self.assertEqual(1, len(DoGet(_REMOTE, '/series'))) | |
380 self.assertEqual(24, len(DoGet(_REMOTE, '/instances'))) | |
381 self.assertEqual('Study', r['Type']) | |
382 self.assertEqual(kneeStudy, r['ID']) | |
383 | |
384 r = DoDelete(_REMOTE, "/instances/%s" % DoGet(_REMOTE, '/instances')[0])['RemainingAncestor'] | |
385 self.assertEqual(1, len(DoGet(_REMOTE, '/patients'))) | |
386 self.assertEqual(1, len(DoGet(_REMOTE, '/studies'))) | |
387 self.assertEqual(1, len(DoGet(_REMOTE, '/series'))) | |
388 self.assertEqual(23, len(DoGet(_REMOTE, '/instances'))) | |
389 self.assertEqual('Series', r['Type']) | |
390 self.assertEqual(kneeT1, r['ID']) | |
391 | |
392 r = DoDelete(_REMOTE, "/patients/%s" % kneePatient)['RemainingAncestor'] | |
393 self.assertEqual(0, len(DoGet(_REMOTE, '/patients'))) | |
394 self.assertEqual(0, len(DoGet(_REMOTE, '/studies'))) | |
395 self.assertEqual(0, len(DoGet(_REMOTE, '/series'))) | |
396 self.assertEqual(0, len(DoGet(_REMOTE, '/instances'))) | |
397 self.assertEqual(None, r) | |
398 | |
399 DropOrthanc(_REMOTE) | |
400 self.assertEqual('0', DoGet(_REMOTE, '/statistics')['TotalDiskSize']) | |
401 self.assertEqual('0', DoGet(_REMOTE, '/statistics')['TotalUncompressedSize']) | |
7 | 402 |
213
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403 def test_delete_cascade(self): |
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404 # make sure deleting the last instance of a study deletes the series, study and patient |
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405 |
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406 self.assertEqual(0, len(DoGet(_REMOTE, '/instances'))) # make sure orthanc is empty when starting the test |
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407 a = UploadInstance(_REMOTE, 'DummyCT.dcm')['ID'] |
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408 self.assertEqual(1, len(DoGet(_REMOTE, '/instances'))) |
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409 self.assertEqual(1, len(DoGet(_REMOTE, '/series'))) |
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410 self.assertEqual(1, len(DoGet(_REMOTE, '/studies'))) |
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411 self.assertEqual(1, len(DoGet(_REMOTE, '/patients'))) |
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412 |
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413 DoDelete(_REMOTE, '/instances/%s' % a) |
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414 |
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415 self.assertEqual(0, len(DoGet(_REMOTE, '/instances'))) |
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416 self.assertEqual(0, len(DoGet(_REMOTE, '/series'))) |
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417 self.assertEqual(0, len(DoGet(_REMOTE, '/studies'))) |
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418 self.assertEqual(0, len(DoGet(_REMOTE, '/patients'))) |
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419 |
7 | 420 |
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421 def test_multiframe(self): |
7 | 422 i = UploadInstance(_REMOTE, 'Multiframe.dcm')['ID'] |
423 self.assertEqual(76, len(DoGet(_REMOTE, '/instances/%s/frames' % i))) | |
424 | |
425 im = GetImage(_REMOTE, '/instances/%s/frames/0/preview' % i) | |
426 self.assertEqual("L", im.mode) | |
427 self.assertEqual(512, im.size[0]) | |
428 self.assertEqual(512, im.size[1]) | |
429 | |
430 DoGet(_REMOTE, '/instances/%s/frames/0/image-uint8' % i) | |
431 DoGet(_REMOTE, '/instances/%s/frames/0/image-uint16' % i) | |
432 DoGet(_REMOTE, '/instances/%s/frames/75/preview' % i) | |
433 self.assertRaises(Exception, lambda: DoGet(_REMOTE, '/instances/%s/frames/aaa/preview' % i)) | |
434 self.assertRaises(Exception, lambda: DoGet(_REMOTE, '/instances/%s/frames/76/preview' % i)) | |
435 | |
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436 |
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437 def test_changes(self): |
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438 # Check emptiness |
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439 c = DoGet(_REMOTE, '/changes') |
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440 self.assertEqual(0, len(c['Changes'])) |
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441 #self.assertEqual(0, c['Last']) # Not true anymore for Orthanc >= 1.5.2 |
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442 self.assertTrue(c['Done']) |
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443 c = DoGet(_REMOTE, '/changes?last') |
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444 self.assertEqual(0, len(c['Changes'])) |
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445 #self.assertEqual(0, c['Last']) # Not true anymore for Orthanc >= 1.5.2 |
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446 self.assertTrue(c['Done']) |
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447 |
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448 # Add 1 instance |
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449 i = UploadInstance(_REMOTE, 'Brainix/Flair/IM-0001-0001.dcm')['ID'] |
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450 c = DoGet(_REMOTE, '/changes') |
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451 begin = c['Last'] |
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452 self.assertEqual(4, len(c['Changes'])) |
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453 self.assertTrue(c['Done']) |
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454 self.assertEqual(c['Changes'][-1]['Seq'], c['Last']) |
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455 |
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456 c = DoGet(_REMOTE, '/changes?last') |
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457 self.assertEqual(1, len(c['Changes'])) |
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458 self.assertEqual(begin, c['Last']) |
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459 self.assertTrue(c['Done']) |
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460 c = DoGet(_REMOTE, '/changes?limit=1&since=' + str(begin - 1)) |
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461 self.assertEqual(1, len(c['Changes'])) |
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462 self.assertEqual(begin, c['Last']) |
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463 self.assertTrue(c['Done']) |
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464 c = DoGet(_REMOTE, '/changes?limit=1&since=' + str(begin - 2)) |
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465 self.assertEqual(1, len(c['Changes'])) |
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466 self.assertEqual(begin - 1, c['Last']) |
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467 self.assertFalse(c['Done']) |
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468 c = DoGet(_REMOTE, '/changes?limit=1&since=' + str(begin - 3)) |
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469 self.assertEqual(1, len(c['Changes'])) |
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470 self.assertEqual(begin - 2, c['Last']) |
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471 self.assertFalse(c['Done']) |
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472 |
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473 UploadFolder(_REMOTE, 'Knee/T1') |
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474 UploadFolder(_REMOTE, 'Knee/T2') |
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475 since = begin |
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476 countPatients = 0 |
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477 countStudies = 0 |
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478 countSeries = 0 |
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479 countInstances = 0 |
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480 completed = 0 |
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481 while True: |
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482 c = DoGet(_REMOTE, '/changes', { 'since' : since, 'limit' : 3 }) |
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483 since = c['Last'] |
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484 for i in c['Changes']: |
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485 if i['ResourceType'] == 'Instance': |
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486 countInstances += 1 |
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487 if i['ResourceType'] == 'Patient': |
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488 countPatients += 1 |
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489 if i['ResourceType'] == 'Study': |
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490 countStudies += 1 |
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491 if i['ResourceType'] == 'Series': |
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492 countSeries += 1 |
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493 if i['ChangeType'] == 'NewInstance': |
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494 countInstances += 1 |
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495 if i['ChangeType'] == 'NewPatient': |
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496 countPatients += 1 |
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497 if i['ChangeType'] == 'NewStudy': |
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498 countStudies += 1 |
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499 if i['ChangeType'] == 'NewSeries': |
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500 countSeries += 1 |
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501 if i['ChangeType'] == 'CompletedSeries': |
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502 completed += 1 |
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503 self.assertTrue('ID' in i) |
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504 self.assertTrue('Path' in i) |
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505 self.assertTrue('Seq' in i) |
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506 if c['Done']: |
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507 break |
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508 |
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509 self.assertEqual(2 * 50, countInstances) |
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510 self.assertEqual(2 * 1, countPatients) |
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511 self.assertEqual(2 * 1, countStudies) |
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512 self.assertEqual(2 * 2, countSeries) |
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513 self.assertEqual(0, completed) |
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514 |
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515 |
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516 def test_archive(self): |
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517 UploadInstance(_REMOTE, 'Knee/T1/IM-0001-0001.dcm') |
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518 UploadInstance(_REMOTE, 'Knee/T2/IM-0001-0001.dcm') |
192 | 519 knee = 'ca29faea-b6a0e17f-067743a1-8b778011-a48b2a17' |
520 | |
521 z = GetArchive(_REMOTE, '/patients/%s/archive' % knee) | |
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522 self.assertEqual(2, len(z.namelist())) |
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523 |
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524 z = GetArchive(_REMOTE, '/studies/%s/archive' % DoGet(_REMOTE, '/studies')[0]) |
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525 self.assertEqual(2, len(z.namelist())) |
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526 |
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527 z = GetArchive(_REMOTE, '/series/%s/archive' % DoGet(_REMOTE, '/series')[0]) |
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528 self.assertEqual(1, len(z.namelist())) |
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529 |
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530 UploadInstance(_REMOTE, 'Brainix/Flair/IM-0001-0001.dcm') |
192 | 531 brainix = '16738bc3-e47ed42a-43ce044c-a3414a45-cb069bd0' |
532 | |
533 z = GetArchive(_REMOTE, '/patients/%s/archive' % knee) | |
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534 self.assertEqual(2, len(z.namelist())) |
192 | 535 |
536 z = PostArchive(_REMOTE, '/tools/create-archive', { | |
537 'Resources' : [ brainix, knee ] | |
538 }) | |
539 self.assertEqual(3, len(z.namelist())) | |
540 | |
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541 |
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542 def test_media_archive(self): |
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543 UploadInstance(_REMOTE, 'Knee/T1/IM-0001-0001.dcm') |
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544 UploadInstance(_REMOTE, 'Knee/T2/IM-0001-0001.dcm') |
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545 |
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546 z = GetArchive(_REMOTE, '/patients/%s/media' % DoGet(_REMOTE, '/patients')[0]) |
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547 self.assertEqual(3, len(z.namelist())) |
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548 self.assertTrue('IMAGES/IM0' in z.namelist()) |
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549 self.assertTrue('IMAGES/IM1' in z.namelist()) |
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550 self.assertTrue('DICOMDIR' in z.namelist()) |
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551 |
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552 try: |
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553 os.remove('/tmp/DICOMDIR') |
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554 except: |
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555 # The file does not exist |
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556 pass |
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557 |
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558 z.extract('DICOMDIR', '/tmp') |
45 | 559 a = subprocess.check_output([ FindExecutable('dciodvfy'), '/tmp/DICOMDIR' ], |
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560 stderr = subprocess.STDOUT).split('\n') |
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561 self.assertEqual(3, len(a)) |
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562 self.assertTrue(a[0].startswith('Warning')) |
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563 self.assertEqual('BasicDirectory', a[1]) |
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564 self.assertEqual('', a[2]) |
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565 |
45 | 566 a = subprocess.check_output([ FindExecutable('dcentvfy'), '/tmp/DICOMDIR' ], |
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567 stderr = subprocess.STDOUT).split('\n') |
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568 self.assertEqual(1, len(a)) |
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569 self.assertEqual('', a[0]) |
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570 |
45 | 571 a = subprocess.check_output([ FindExecutable('dcm2xml'), '/tmp/DICOMDIR' ]) |
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572 self.assertTrue(re.search('1.3.46.670589.11.17521.5.0.3124.2008081908590448738', a) != None) |
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573 self.assertTrue(re.search('1.3.46.670589.11.17521.5.0.3124.2008081909113806560', a) != None) |
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574 |
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575 os.remove('/tmp/DICOMDIR') |
10 | 576 |
577 | |
578 def test_protection(self): | |
579 UploadInstance(_REMOTE, 'Knee/T1/IM-0001-0001.dcm') | |
580 UploadInstance(_REMOTE, 'Brainix/Flair/IM-0001-0001.dcm') | |
581 self.assertEqual(2, len(DoGet(_REMOTE, '/patients'))) | |
582 a = DoGet(_REMOTE, '/patients')[0] | |
583 b = DoGet(_REMOTE, '/patients')[1] | |
584 self.assertEqual(0, DoGet(_REMOTE, '/patients/%s/protected' % a)) | |
585 DoPut(_REMOTE, '/patients/%s/protected' % a, '0', 'text/plain') | |
586 self.assertEqual(0, DoGet(_REMOTE, '/patients/%s/protected' % a)) | |
587 DoPut(_REMOTE, '/patients/%s/protected' % a, '1', 'text/plain') | |
588 self.assertEqual(1, DoGet(_REMOTE, '/patients/%s/protected' % a)) | |
589 DoPut(_REMOTE, '/patients/%s/protected' % a, '0', 'text/plain') | |
590 self.assertEqual(0, DoGet(_REMOTE, '/patients/%s/protected' % a)) | |
591 | |
592 | |
12 | 593 def test_raw_tags(self): |
10 | 594 i = UploadInstance(_REMOTE, 'PrivateTags.dcm')['ID'] |
595 | |
596 dicom = DoGet(_REMOTE, '/instances/%s/file' % i) | |
597 self.assertEqual('1a7c56cb02d6e742cc9c856a8ac182e3', ComputeMD5(dicom)) | |
598 | |
599 s = '/instances/%s/content/' % i | |
600 | |
601 self.assertEqual('LOGIQBOOK', DoGet(_REMOTE, s + '0008-1010').strip()) | |
602 self.assertRaises(Exception, lambda: DoGet(_REMOTE, s + '0008-1011')) | |
603 | |
604 self.assertEqual('Abdomen', DoGet(_REMOTE, s + '7fe1-1001/0/7fe1-1008/0/7fe1-1057').strip()) | |
605 self.assertEqual('cla_3c', DoGet(_REMOTE, s + '7fe1-1001/0/7fe1-1008/8/7fe1-1057').strip()) | |
606 | |
607 UploadInstance(_REMOTE, 'Brainix/Epi/IM-0001-0001.dcm') | |
608 UploadInstance(_REMOTE, 'Brainix/Flair/IM-0001-0001.dcm') | |
609 UploadInstance(_REMOTE, 'Knee/T1/IM-0001-0001.dcm') | |
610 UploadInstance(_REMOTE, 'Knee/T2/IM-0001-0001.dcm') | |
611 | |
612 for i in DoGet(_REMOTE, '/instances'): | |
613 aid = DoGet(_REMOTE, '/instances/%s' % i)['MainDicomTags']['SOPInstanceUID'] | |
614 self.assertEqual(aid, DoGet(_REMOTE, '/instances/%s/content/0008-0018' % i).replace(chr(0), '')) | |
615 | |
616 | |
617 def test_raw_tags_mdn(self): | |
618 # Bug reported by Cyril Paulus | |
619 i = UploadInstance(_REMOTE, 'PrivateMDNTags.dcm')['ID'] | |
620 self.assertAlmostEqual(0.000027, DoGet(_REMOTE, '/instances/%s/content/7053-1000' % i)) | |
621 | |
622 | |
623 def test_modify_instance(self): | |
624 i = UploadInstance(_REMOTE, 'PrivateTags.dcm')['ID'] | |
625 modified = DoPost(_REMOTE, '/instances/%s/modify' % i, | |
626 json.dumps({ | |
627 "Replace" : { | |
628 "PatientName" : "hello", | |
629 #"PatientID" : "world" | |
630 }, | |
631 "Remove" : [ "StationName" ], | |
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632 "RemovePrivateTags" : True |
10 | 633 }), |
634 'application/json') | |
635 j = DoPost(_REMOTE, '/instances', modified, 'application/dicom')['ID'] | |
636 | |
637 self.assertNotEqual('hello', DoGet(_REMOTE, '/instances/%s/content/0010-0010' % i).strip()) | |
638 #self.assertNotEqual('world', DoGet(_REMOTE, '/instances/%s/content/0010-0020' % i).strip()) | |
83 | 639 self.assertEqual('LOGIQBOOK', DoGet(_REMOTE, '/instances/%s/content/0008-1010' % i).strip()) |
10 | 640 DoGet(_REMOTE, '/instances/%s/content/6003-1010' % i) # Some private tag |
641 | |
642 self.assertEqual('hello', DoGet(_REMOTE, '/instances/%s/content/0010-0010' % j).strip()) | |
643 #self.assertEqual('world', DoGet(_REMOTE, '/instances/%s/content/0010-0020' % j).strip()) | |
644 self.assertRaises(Exception, lambda: DoGet(_REMOTE, '/instances/%s/content/0008-1010' % j)) | |
645 self.assertRaises(Exception, lambda: DoGet(_REMOTE, '/instances/%s/content/6003-1010' % j)) | |
646 | |
647 | |
648 def test_modify_series(self): | |
649 # Upload 4 images from the same series | |
650 for i in range(4): | |
651 UploadInstance(_REMOTE, 'Brainix/Epi/IM-0001-000%d.dcm' % (i + 1)) | |
652 | |
653 origSeries = DoGet(_REMOTE, '/series')[0] | |
654 newSeries = DoPost(_REMOTE, '/series/%s/modify' % origSeries, | |
655 '{"Replace":{"PatientName":"Jodogne"}}', | |
656 'application/json')['ID'] | |
657 | |
658 self.assertEqual(origSeries, DoGet(_REMOTE, '/series/%s' % newSeries)['ModifiedFrom']) | |
659 instances = DoGet(_REMOTE, '/series/%s' % newSeries)['Instances'] | |
660 self.assertEqual(4, len(instances)) | |
661 for i in instances: | |
662 j = DoGet(_REMOTE, '/instances/%s' % i)['ModifiedFrom'] | |
663 self.assertEqual(newSeries, DoGet(_REMOTE, '/instances/%s' % i)['ParentSeries']) | |
664 self.assertEqual(origSeries, DoGet(_REMOTE, '/instances/%s' % j)['ParentSeries']) | |
665 | |
666 self.assertEqual('Jodogne', DoGet(_REMOTE, '/instances/%s/content/0010-0010' % i).strip()) | |
667 self.assertNotEqual('Jodogne', DoGet(_REMOTE, '/instances/%s/content/0010-0010' % j).strip()) | |
668 | |
669 | |
670 def test_modify_study(self): | |
671 # Upload 4 images from the 2 series of the same study | |
672 for i in range(4): | |
673 UploadInstance(_REMOTE, 'Brainix/Flair/IM-0001-000%d.dcm' % (i + 1)) | |
674 UploadInstance(_REMOTE, 'Brainix/Epi/IM-0001-000%d.dcm' % (i + 1)) | |
675 | |
676 origStudy = DoGet(_REMOTE, '/studies')[0] | |
677 newStudy = DoPost(_REMOTE, '/studies/%s/modify' % origStudy, | |
678 '{"Replace":{"PatientName":"Jodogne"}}', | |
679 'application/json')['ID'] | |
680 | |
681 self.assertEqual(origStudy, DoGet(_REMOTE, '/studies/%s' % newStudy)['ModifiedFrom']) | |
682 series = DoGet(_REMOTE, '/studies/%s' % newStudy)['Series'] | |
683 self.assertEqual(2, len(series)) | |
684 for s in series: | |
685 ss = DoGet(_REMOTE, '/series/%s' % s)['ModifiedFrom'] | |
686 self.assertEqual(newStudy, DoGet(_REMOTE, '/series/%s' % s)['ParentStudy']) | |
687 self.assertEqual(origStudy, DoGet(_REMOTE, '/series/%s' % ss)['ParentStudy']) | |
688 | |
689 instances = DoGet(_REMOTE, '/series/%s' % s)['Instances'] | |
690 for i in instances: | |
691 j = DoGet(_REMOTE, '/instances/%s' % i)['ModifiedFrom'] | |
692 self.assertEqual(s, DoGet(_REMOTE, '/instances/%s' % i)['ParentSeries']) | |
693 self.assertEqual(ss, DoGet(_REMOTE, '/instances/%s' % j)['ParentSeries']) | |
694 | |
695 self.assertEqual('Jodogne', DoGet(_REMOTE, '/instances/%s/content/0010-0010' % i).strip()) | |
696 self.assertNotEqual('Jodogne', DoGet(_REMOTE, '/instances/%s/content/0010-0010' % j).strip()) | |
697 | |
698 | |
699 def test_anonymize_series(self): | |
700 # Upload 4 images from the same series | |
701 for i in range(4): | |
702 UploadInstance(_REMOTE, 'Brainix/Epi/IM-0001-000%d.dcm' % (i + 1)) | |
703 | |
704 origSeries = DoGet(_REMOTE, '/series')[0] | |
705 newSeries = DoPost(_REMOTE, '/series/%s/anonymize' % origSeries, | |
706 '{}', | |
707 'application/json')['ID'] | |
708 | |
709 self.assertEqual(origSeries, DoGet(_REMOTE, '/series/%s' % newSeries)['AnonymizedFrom']) | |
710 instances = DoGet(_REMOTE, '/series/%s' % newSeries)['Instances'] | |
711 self.assertEqual(4, len(instances)) | |
712 for i in instances: | |
713 j = DoGet(_REMOTE, '/instances/%s' % i)['AnonymizedFrom'] | |
714 self.assertEqual(newSeries, DoGet(_REMOTE, '/instances/%s' % i)['ParentSeries']) | |
715 self.assertEqual(origSeries, DoGet(_REMOTE, '/instances/%s' % j)['ParentSeries']) | |
716 | |
717 DoGet(_REMOTE, '/instances/%s/content/0008-1010' % j) | |
718 self.assertRaises(Exception, lambda: DoGet(_REMOTE, '/instances/%s/content/0008-1010' % i)) | |
719 | |
720 | |
721 def test_anonymize_study(self): | |
722 # Upload 4 images from the 2 series of the same study | |
723 for i in range(4): | |
724 UploadInstance(_REMOTE, 'Brainix/Flair/IM-0001-000%d.dcm' % (i + 1)) | |
725 UploadInstance(_REMOTE, 'Brainix/Epi/IM-0001-000%d.dcm' % (i + 1)) | |
726 | |
727 origStudy = DoGet(_REMOTE, '/studies')[0] | |
728 newStudy = DoPost(_REMOTE,'/studies/%s/anonymize' % origStudy, | |
729 '{"Replace":{"PatientName":"Jodogne"}}', | |
730 'application/json')['ID'] | |
731 | |
732 self.assertEqual(origStudy, DoGet(_REMOTE, '/studies/%s' % newStudy)['AnonymizedFrom']) | |
733 series = DoGet(_REMOTE, '/studies/%s' % newStudy)['Series'] | |
734 self.assertEqual(2, len(series)) | |
735 for s in series: | |
736 ss = DoGet(_REMOTE, '/series/%s' % s)['AnonymizedFrom'] | |
737 self.assertEqual(newStudy, DoGet(_REMOTE, '/series/%s' % s)['ParentStudy']) | |
738 self.assertEqual(origStudy, DoGet(_REMOTE, '/series/%s' % ss)['ParentStudy']) | |
739 | |
740 instances = DoGet(_REMOTE, '/series/%s' % s)['Instances'] | |
741 for i in instances: | |
742 j = DoGet(_REMOTE, '/instances/%s' % i)['AnonymizedFrom'] | |
743 self.assertEqual(s, DoGet(_REMOTE, '/instances/%s' % i)['ParentSeries']) | |
744 self.assertEqual(ss, DoGet(_REMOTE, '/instances/%s' % j)['ParentSeries']) | |
745 | |
746 self.assertEqual('Jodogne', DoGet(_REMOTE, '/instances/%s/content/0010-0010' % i).strip()) | |
747 self.assertNotEqual('Jodogne', DoGet(_REMOTE, '/instances/%s/content/0010-0010' % j).strip()) | |
11 | 748 |
749 | |
750 | |
751 def test_storescu(self): | |
752 # Check emptiness | |
753 e = DoGet(_REMOTE, '/exports') | |
754 self.assertEqual(0, len(e['Exports'])) | |
755 self.assertEqual(0, e['Last']) | |
756 self.assertTrue(e['Done']) | |
757 e = DoGet(_REMOTE, '/exports?last') | |
758 self.assertEqual(0, len(e['Exports'])) | |
759 self.assertEqual(0, e['Last']) | |
760 self.assertTrue(e['Done']) | |
761 | |
762 # Add 1 instance | |
763 i = UploadInstance(_REMOTE, 'DummyCT.dcm')['ID'] | |
764 self.assertEqual(0, len(DoGet(_LOCAL, '/patients'))) | |
765 | |
766 # Export the instance | |
767 j = DoPost(_REMOTE, '/modalities/orthanctest/store', str(i), 'text/plain') # instance | |
768 self.assertEqual(1, len(DoGet(_LOCAL, '/patients'))) | |
769 self.assertEqual(1, len(DoGet(_LOCAL, '/studies'))) | |
770 self.assertEqual(1, len(DoGet(_LOCAL, '/series'))) | |
771 self.assertEqual(1, len(DoGet(_LOCAL, '/instances'))) | |
772 | |
773 e = DoGet(_REMOTE, '/exports') | |
774 self.assertEqual(1, len(e['Exports'])) | |
775 self.assertTrue(e['Done']) | |
776 self.assertEqual(e['Exports'][-1]['Seq'], e['Last']) | |
777 e = DoGet(_REMOTE, '/exports?limit=1') | |
778 self.assertEqual(1, len(e['Exports'])) | |
779 self.assertTrue(e['Done']) | |
780 self.assertEqual(e['Exports'][-1]['Seq'], e['Last']) | |
781 e = DoGet(_REMOTE, '/exports?last') | |
782 self.assertEqual(1, len(e['Exports'])) | |
783 self.assertTrue(e['Done']) | |
784 self.assertEqual(e['Exports'][-1]['Seq'], e['Last']) | |
785 seqInstance = e['Last'] | |
786 | |
787 # Export the series | |
788 j = DoPost(_REMOTE, '/modalities/orthanctest/store', 'f2635388-f01d497a-15f7c06b-ad7dba06-c4c599fe', 'text/plain') | |
789 | |
790 e = DoGet(_REMOTE, '/exports') | |
791 self.assertEqual(2, len(e['Exports'])) | |
792 self.assertTrue(e['Done']) | |
793 self.assertEqual(e['Exports'][-1]['Seq'], e['Last']) | |
794 seqSeries = e['Last'] | |
795 self.assertNotEqual(seqInstance, seqSeries) | |
796 e = DoGet(_REMOTE, '/exports?limit=1&since=0') | |
797 self.assertEqual(1, len(e['Exports'])) | |
798 self.assertFalse(e['Done']) | |
799 self.assertEqual(e['Exports'][-1]['Seq'], seqInstance) | |
800 e = DoGet(_REMOTE, '/exports?limit=1&since=' + str(seqInstance)) | |
801 self.assertEqual(1, len(e['Exports'])) | |
802 self.assertTrue(e['Done']) | |
803 self.assertEqual(e['Exports'][-1]['Seq'], seqSeries) | |
804 e = DoGet(_REMOTE, '/exports?last') | |
805 self.assertEqual(1, len(e['Exports'])) | |
806 self.assertTrue(e['Done']) | |
807 self.assertEqual(e['Exports'][-1]['Seq'], seqSeries) | |
808 | |
809 # Export the study | |
810 j = DoPost(_REMOTE, '/modalities/orthanctest/store', 'b9c08539-26f93bde-c81ab0d7-bffaf2cb-a4d0bdd0', 'text/plain') | |
811 seqStudy = DoGet(_REMOTE, '/exports')['Last'] | |
812 | |
813 # Export the patient | |
814 j = DoPost(_REMOTE, '/modalities/orthanctest/store', '6816cb19-844d5aee-85245eba-28e841e6-2414fae2', 'text/plain') | |
815 self.assertEqual(1, len(DoGet(_LOCAL, '/patients'))) | |
816 self.assertEqual(1, len(DoGet(_LOCAL, '/studies'))) | |
817 self.assertEqual(1, len(DoGet(_LOCAL, '/series'))) | |
818 self.assertEqual(1, len(DoGet(_LOCAL, '/instances'))) | |
819 | |
820 e = DoGet(_REMOTE, '/exports') | |
821 self.assertEqual(4, len(e['Exports'])) | |
822 self.assertTrue(e['Done']) | |
823 self.assertEqual(e['Exports'][-1]['Seq'], e['Last']) | |
824 seqPatient = e['Last'] | |
825 self.assertNotEqual(seqInstance, seqSeries) | |
826 self.assertNotEqual(seqSeries, seqStudy) | |
827 self.assertNotEqual(seqStudy, seqPatient) | |
828 self.assertTrue(seqInstance < seqSeries) | |
829 self.assertTrue(seqSeries < seqStudy) | |
830 self.assertTrue(seqStudy < seqPatient) | |
831 e = DoGet(_REMOTE, '/exports?limit=1&since=0') | |
832 self.assertEqual(1, len(e['Exports'])) | |
833 self.assertFalse(e['Done']) | |
834 self.assertEqual(e['Exports'][-1]['Seq'], seqInstance) | |
835 e = DoGet(_REMOTE, '/exports?limit=1&since=' + str(seqInstance)) | |
836 self.assertEqual(1, len(e['Exports'])) | |
837 self.assertFalse(e['Done']) | |
838 self.assertEqual(e['Exports'][-1]['Seq'], seqSeries) | |
839 e = DoGet(_REMOTE, '/exports?limit=1&since=' + str(seqSeries)) | |
840 self.assertEqual(1, len(e['Exports'])) | |
841 self.assertFalse(e['Done']) | |
842 self.assertEqual(e['Exports'][-1]['Seq'], seqStudy) | |
843 e = DoGet(_REMOTE, '/exports?limit=1&since=' + str(seqStudy)) | |
844 self.assertEqual(1, len(e['Exports'])) | |
845 self.assertTrue(e['Done']) | |
846 self.assertEqual(e['Exports'][-1]['Seq'], seqPatient) | |
847 e = DoGet(_REMOTE, '/exports?last') | |
848 self.assertEqual(1, len(e['Exports'])) | |
849 self.assertTrue(e['Done']) | |
850 self.assertEqual(e['Exports'][-1]['Seq'], seqPatient) | |
851 | |
852 | |
853 # Check the content of the logged information | |
854 e = DoGet(_REMOTE, '/exports')['Exports'] | |
855 | |
856 if 'PatientID' in e[0]: | |
857 # Since Orthanc 0.8.6 | |
858 patient = 'PatientID' | |
859 study = 'StudyInstanceUID' | |
860 series = 'SeriesInstanceUID' | |
861 instance = 'SOPInstanceUID' | |
862 else: | |
863 # Up to Orthanc 0.8.5 | |
864 patient = 'PatientId' | |
865 study = 'StudyInstanceUid' | |
866 series = 'SeriesInstanceUid' | |
867 instance = 'SopInstanceUid' | |
868 | |
869 for k in range(4): | |
870 self.assertTrue('Date' in e[k]) | |
871 self.assertTrue('Seq' in e[k]) | |
872 self.assertEqual('orthanctest', e[k]['RemoteModality']) | |
873 | |
874 self.assertEqual(10, len(e[0])) | |
875 self.assertEqual('Instance', e[0]['ResourceType']) | |
876 self.assertEqual('66a662ce-7430e543-bad44d47-0dc5a943-ec7a538d', e[0]['ID']) | |
877 self.assertEqual('/instances/66a662ce-7430e543-bad44d47-0dc5a943-ec7a538d', e[0]['Path']) | |
878 self.assertEqual('1.2.840.113619.2.176.2025.1499492.7040.1171286242.109', e[0][instance]) | |
879 self.assertEqual('1.2.840.113619.2.176.2025.1499492.7391.1171285944.394', e[0][series]) | |
880 self.assertEqual('1.2.840.113619.2.176.2025.1499492.7391.1171285944.390', e[0][study]) | |
881 self.assertEqual('ozp00SjY2xG', e[0][patient]) | |
882 | |
883 self.assertEqual(9, len(e[1])) | |
884 self.assertEqual('Series', e[1]['ResourceType']) | |
885 self.assertEqual('f2635388-f01d497a-15f7c06b-ad7dba06-c4c599fe', e[1]['ID']) | |
886 self.assertEqual('/series/f2635388-f01d497a-15f7c06b-ad7dba06-c4c599fe', e[1]['Path']) | |
887 self.assertEqual('1.2.840.113619.2.176.2025.1499492.7391.1171285944.394', e[1][series]) | |
888 self.assertEqual('1.2.840.113619.2.176.2025.1499492.7391.1171285944.390', e[1][study]) | |
889 self.assertEqual('ozp00SjY2xG', e[1][patient]) | |
890 | |
891 self.assertEqual(8, len(e[2])) | |
892 self.assertEqual('Study', e[2]['ResourceType']) | |
893 self.assertEqual('b9c08539-26f93bde-c81ab0d7-bffaf2cb-a4d0bdd0', e[2]['ID']) | |
894 self.assertEqual('/studies/b9c08539-26f93bde-c81ab0d7-bffaf2cb-a4d0bdd0', e[2]['Path']) | |
895 self.assertEqual('1.2.840.113619.2.176.2025.1499492.7391.1171285944.390', e[2][study]) | |
896 self.assertEqual('ozp00SjY2xG', e[2][patient]) | |
897 | |
898 self.assertEqual(7, len(e[3])) | |
899 self.assertEqual('Patient', e[3]['ResourceType']) | |
900 self.assertEqual('6816cb19-844d5aee-85245eba-28e841e6-2414fae2', e[3]['ID']) | |
901 self.assertEqual('/patients/6816cb19-844d5aee-85245eba-28e841e6-2414fae2', e[3]['Path']) | |
902 self.assertEqual('ozp00SjY2xG', e[3][patient]) | |
903 | |
904 DropOrthanc(_REMOTE) | |
905 self.assertEqual(0, len(DoGet(_REMOTE, '/exports')['Exports'])) | |
906 | |
907 | |
908 def test_store_peer(self): | |
909 self.assertEqual(0, len(DoGet(_LOCAL, '/exports')['Exports'])) | |
910 self.assertEqual(0, len(DoGet(_REMOTE, '/exports')['Exports'])) | |
911 | |
912 i = UploadInstance(_REMOTE, 'DummyCT.dcm')['ID'] | |
913 self.assertEqual(0, len(DoGet(_LOCAL, '/patients'))) | |
914 self.assertEqual(1, len(DoGet(_REMOTE, '/patients'))) | |
915 | |
916 j = DoPost(_REMOTE, '/peers/peer/store', str(i), 'text/plain') | |
917 self.assertEqual(1, len(DoGet(_LOCAL, '/patients'))) | |
918 self.assertEqual(1, len(DoGet(_REMOTE, '/patients'))) | |
919 | |
920 self.assertEqual(1, len(DoGet(_REMOTE, '/exports')['Exports'])) | |
921 | |
922 DropOrthanc(_REMOTE) | |
923 self.assertEqual(0, len(DoGet(_REMOTE, '/exports')['Exports'])) | |
924 | |
925 | |
926 def test_bulk_storescu(self): | |
927 self.assertEqual(0, len(DoGet(_LOCAL, '/patients'))) | |
928 | |
929 a = UploadInstance(_REMOTE, 'Knee/T1/IM-0001-0001.dcm') | |
930 b = UploadInstance(_REMOTE, 'Knee/T2/IM-0001-0001.dcm') | |
931 | |
932 j = DoPost(_REMOTE, '/modalities/orthanctest/store', [ a['ID'], b['ID'] ], 'application/json') | |
933 self.assertEqual(2, len(DoGet(_LOCAL, '/instances'))) | |
934 | |
935 DropOrthanc(_LOCAL) | |
936 | |
937 # Send using patient's UUID | |
938 self.assertEqual(0, len(DoGet(_LOCAL, '/instances'))) | |
939 j = DoPost(_REMOTE, '/modalities/orthanctest/store', | |
940 [ 'ca29faea-b6a0e17f-067743a1-8b778011-a48b2a17' ], 'application/json') | |
941 self.assertEqual(2, len(DoGet(_LOCAL, '/instances'))) | |
942 | |
943 | |
944 def test_color(self): | |
945 i = UploadInstance(_REMOTE, 'ColorTestMalaterre.dcm')['ID'] | |
946 im = GetImage(_REMOTE, '/instances/%s/preview' % i) | |
947 self.assertEqual("RGB", im.mode) | |
948 self.assertEqual(41, im.size[0]) | |
949 self.assertEqual(41, im.size[1]) | |
950 | |
951 # http://effbot.org/zone/pil-comparing-images.htm | |
13 | 952 truth = Image.open(GetDatabasePath('ColorTestMalaterre.png')) |
11 | 953 self.assertTrue(ImageChops.difference(im, truth).getbbox() is None) |
954 | |
955 | |
12 | 956 def test_faking_ruby_put(self): |
957 UploadInstance(_REMOTE, 'Knee/T1/IM-0001-0001.dcm') | |
958 UploadInstance(_REMOTE, 'Brainix/Flair/IM-0001-0001.dcm') | |
959 self.assertEqual(2, len(DoGet(_REMOTE, '/patients'))) | |
960 a = DoGet(_REMOTE, '/patients')[0] | |
961 b = DoGet(_REMOTE, '/patients')[1] | |
962 self.assertEqual(0, DoGet(_REMOTE, '/patients/%s/protected' % a)) | |
963 DoGet(_REMOTE, '/patients/%s/protected' % a, data = { '_method' : 'PUT' }, body = '0') | |
964 self.assertEqual(0, DoGet(_REMOTE, '/patients/%s/protected' % a)) | |
965 DoGet(_REMOTE, '/patients/%s/protected' % a, data = { '_method' : 'PUT' }, body = '1') | |
966 self.assertEqual(1, DoGet(_REMOTE, '/patients/%s/protected' % a)) | |
967 DoGet(_REMOTE, '/patients/%s/protected' % a, data = { '_method' : 'PUT' }, body = '0') | |
968 self.assertEqual(0, DoGet(_REMOTE, '/patients/%s/protected' % a)) | |
969 | |
970 | |
971 def test_faking_ruby_delete(self): | |
972 UploadInstance(_REMOTE, 'Knee/T1/IM-0001-0001.dcm') | |
973 UploadInstance(_REMOTE, 'Brainix/Flair/IM-0001-0001.dcm') | |
974 self.assertEqual(2, len(DoGet(_REMOTE, '/patients'))) | |
975 a = DoGet(_REMOTE, '/patients')[0] | |
976 b = DoGet(_REMOTE, '/patients')[1] | |
977 DoGet(_REMOTE, '/patients/%s' % a, data = { '_method' : 'DELETE' }) | |
978 self.assertEqual(1, len(DoGet(_REMOTE, '/patients'))) | |
979 DoGet(_REMOTE, '/patients/%s' % b, data = { '_method' : 'DELETE' }) | |
980 self.assertEqual(0, len(DoGet(_REMOTE, '/patients'))) | |
981 | |
982 | |
983 def test_faking_google_put(self): | |
984 UploadInstance(_REMOTE, 'Knee/T1/IM-0001-0001.dcm') | |
985 UploadInstance(_REMOTE, 'Brainix/Flair/IM-0001-0001.dcm') | |
986 self.assertEqual(2, len(DoGet(_REMOTE, '/patients'))) | |
987 a = DoGet(_REMOTE, '/patients')[0] | |
988 b = DoGet(_REMOTE, '/patients')[1] | |
989 self.assertEqual(0, DoGet(_REMOTE, '/patients/%s/protected' % a)) | |
990 DoPost(_REMOTE, '/patients/%s/protected' % a, headers = { 'X-HTTP-Method-Override' : 'PUT' }, data = '0') | |
991 self.assertEqual(0, DoGet(_REMOTE, '/patients/%s/protected' % a)) | |
992 DoPost(_REMOTE, '/patients/%s/protected' % a, headers = { 'X-HTTP-Method-Override' : 'PUT' }, data = '1') | |
993 self.assertEqual(1, DoGet(_REMOTE, '/patients/%s/protected' % a)) | |
994 DoPost(_REMOTE, '/patients/%s/protected' % a, headers = { 'X-HTTP-Method-Override' : 'PUT' }, data = '0') | |
995 self.assertEqual(0, DoGet(_REMOTE, '/patients/%s/protected' % a)) | |
996 | |
997 | |
998 def test_faking_google_delete(self): | |
999 UploadInstance(_REMOTE, 'Knee/T1/IM-0001-0001.dcm') | |
1000 UploadInstance(_REMOTE, 'Brainix/Flair/IM-0001-0001.dcm') | |
1001 self.assertEqual(2, len(DoGet(_REMOTE, '/patients'))) | |
1002 a = DoGet(_REMOTE, '/patients')[0] | |
1003 b = DoGet(_REMOTE, '/patients')[1] | |
1004 DoPost(_REMOTE, '/patients/%s' % a, headers = { 'X-HTTP-Method-Override' : 'DELETE' }) | |
1005 self.assertEqual(1, len(DoGet(_REMOTE, '/patients'))) | |
1006 DoPost(_REMOTE, '/patients/%s' % b, headers = { 'X-HTTP-Method-Override' : 'DELETE' }) | |
1007 self.assertEqual(0, len(DoGet(_REMOTE, '/patients'))) | |
1008 | |
1009 | |
1010 def test_lua(self): | |
1011 self.assertEqual(42, DoPost(_REMOTE, '/tools/execute-script', 'print(42)')) | |
1012 self.assertTrue(IsDefinedInLua(_REMOTE, 'PrintRecursive')) | |
1013 self.assertFalse(IsDefinedInLua(_REMOTE, 'HelloWorld')) | |
1014 | |
1015 | |
1016 def test_metadata(self): | |
1017 UploadInstance(_REMOTE, 'Knee/T1/IM-0001-0001.dcm') | |
1018 p = DoGet(_REMOTE, '/patients')[0] | |
1019 i = DoGet(_REMOTE, '/instances')[0] | |
1020 | |
1021 m = DoGet(_REMOTE, '/patients/%s/metadata' % p) | |
1022 self.assertEqual(1, len(m)) | |
1023 self.assertEqual('LastUpdate', m[0]) | |
1024 | |
1025 m = DoGet(_REMOTE, '/instances/%s/metadata' % i) | |
145 | 1026 self.assertEqual(8, len(m)) |
12 | 1027 self.assertTrue('IndexInSeries' in m) |
1028 self.assertTrue('ReceptionDate' in m) | |
1029 self.assertTrue('RemoteAET' in m) | |
63
2652d562267a
test Origin metadata of instances
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
62
diff
changeset
|
1030 self.assertTrue('Origin' in m) |
89
74b7b9aed5f8
test TransferSyntax metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
87
diff
changeset
|
1031 self.assertTrue('TransferSyntax' in m) |
95
a807a4699eb4
testing of metadata SopClassUid
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
92
diff
changeset
|
1032 self.assertTrue('SopClassUid' in m) |
145 | 1033 self.assertTrue('RemoteIP' in m) |
1034 self.assertTrue('HttpUsername' in m) | |
63
2652d562267a
test Origin metadata of instances
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
62
diff
changeset
|
1035 self.assertEqual(DoGet(_REMOTE, '/instances/%s/metadata/IndexInSeries' % i), 1) |
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1036 self.assertEqual(DoGet(_REMOTE, '/instances/%s/metadata/Origin' % i), 'RestApi') |
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1037 self.assertEqual(DoGet(_REMOTE, '/instances/%s/metadata/RemoteAET' % i), '') # None, received by REST API |
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1038 self.assertEqual(DoGet(_REMOTE, '/instances/%s/metadata/TransferSyntax' % i), '1.2.840.10008.1.2.4.91') # JPEG2k |
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1039 self.assertEqual(DoGet(_REMOTE, '/instances/%s/metadata/SopClassUid' % i), '1.2.840.10008.5.1.4.1.1.4') |
12 | 1040 |
1041 # Play with custom metadata | |
1042 DoPut(_REMOTE, '/patients/%s/metadata/5555' % p, 'coucou') | |
1043 m = DoGet(_REMOTE, '/patients/%s/metadata' % p) | |
1044 self.assertEqual(2, len(m)) | |
1045 self.assertTrue('LastUpdate' in m) | |
1046 self.assertTrue('5555' in m) | |
1047 self.assertEqual('coucou', DoGet(_REMOTE, '/patients/%s/metadata/5555' % p)) | |
1048 DoPut(_REMOTE, '/patients/%s/metadata/5555' % p, 'hello') | |
1049 self.assertEqual('hello', DoGet(_REMOTE, '/patients/%s/metadata/5555' % p)) | |
1050 DoDelete(_REMOTE, '/patients/%s/metadata/5555' % p) | |
1051 m = DoGet(_REMOTE, '/patients/%s/metadata' % p) | |
1052 self.assertEqual(1, len(m)) | |
1053 self.assertTrue('LastUpdate' in m) | |
13 | 1054 |
1055 | |
1056 def test_statistics(self): | |
1057 # Upload 16 instances | |
1058 for i in range(4): | |
1059 UploadInstance(_REMOTE, 'Brainix/Flair/IM-0001-000%d.dcm' % (i + 1)) | |
1060 UploadInstance(_REMOTE, 'Brainix/Epi/IM-0001-000%d.dcm' % (i + 1)) | |
1061 UploadInstance(_REMOTE, 'Knee/T1/IM-0001-000%d.dcm' % (i + 1)) | |
1062 UploadInstance(_REMOTE, 'Knee/T2/IM-0001-000%d.dcm' % (i + 1)) | |
1063 | |
1064 s = DoGet(_REMOTE, '/statistics') | |
1065 self.assertEqual(16, s['CountInstances']) | |
1066 self.assertEqual(2, s['CountPatients']) | |
1067 self.assertEqual(2, s['CountStudies']) | |
1068 self.assertEqual(4, s['CountSeries']) | |
1069 d = int(s['TotalUncompressedSize']) | |
1070 | |
1071 e = 0 | |
1072 for patient in DoGet(_REMOTE, '/patients'): | |
1073 s = DoGet(_REMOTE, '/patients/%s/statistics' % patient) | |
1074 self.assertEqual(8, s['CountInstances']) | |
1075 self.assertEqual(1, s['CountStudies']) | |
1076 self.assertEqual(2, s['CountSeries']) | |
1077 e += int(s['UncompressedSize']) | |
1078 | |
1079 for study in DoGet(_REMOTE, '/studies'): | |
1080 s = DoGet(_REMOTE, '/studies/%s/statistics' % study) | |
1081 self.assertEqual(8, s['CountInstances']) | |
1082 self.assertEqual(2, s['CountSeries']) | |
1083 e += int(s['UncompressedSize']) | |
1084 | |
1085 for series in DoGet(_REMOTE, '/series'): | |
1086 s = DoGet(_REMOTE, '/series/%s/statistics' % series) | |
1087 self.assertEqual(4, s['CountInstances']) | |
1088 e += int(s['UncompressedSize']) | |
1089 | |
1090 self.assertEqual(3 * d, e) | |
1091 | |
1092 | |
1093 def test_custom_attachment(self): | |
1094 UploadInstance(_REMOTE, 'Brainix/Flair/IM-0001-0001.dcm') | |
1095 patient = DoGet(_REMOTE, '/patients')[0] | |
1096 instance = DoGet(_REMOTE, '/instances')[0] | |
1097 size = int(DoGet(_REMOTE, '/patients/%s/statistics' % patient)['DiskSize']) | |
1098 self.assertEqual(size, int(DoGet(_REMOTE, '/statistics')['TotalDiskSize'])) | |
1099 | |
1100 self.assertEqual(0, len(DoGet(_REMOTE, '/patients/%s/attachments' % patient))) | |
1101 self.assertEqual(2, len(DoGet(_REMOTE, '/instances/%s/attachments' % instance))) | |
1102 self.assertTrue('dicom' in DoGet(_REMOTE, '/instances/%s/attachments' % instance)) | |
1103 self.assertTrue('dicom-as-json' in DoGet(_REMOTE, '/instances/%s/attachments' % instance)) | |
1104 | |
1105 self.assertRaises(Exception, lambda: DoPut(_REMOTE, '/patients/%s/attachments/22' % patient, 'hello')) | |
1106 hello = 'hellohellohellohellohellohellohellohellohello' | |
1107 DoPut(_REMOTE, '/patients/%s/attachments/1025' % patient, hello) | |
1108 self.assertEqual(int(DoGet(_REMOTE, '/patients/%s/statistics' % patient)['DiskSize']), | |
1109 int(DoGet(_REMOTE, '/statistics')['TotalDiskSize'])) | |
1110 self.assertEqual(int(DoGet(_REMOTE, '/patients/%s/statistics' % patient)['DiskSize']), | |
1111 size + int(DoGet(_REMOTE, '/patients/%s/attachments/1025/compressed-size' % patient))) | |
1112 | |
1113 DoPut(_REMOTE, '/patients/%s/attachments/1026' % patient, 'world') | |
1114 self.assertEqual(int(DoGet(_REMOTE, '/patients/%s/statistics' % patient)['DiskSize']), | |
1115 int(DoGet(_REMOTE, '/statistics')['TotalDiskSize'])) | |
1116 self.assertEqual(int(DoGet(_REMOTE, '/patients/%s/statistics' % patient)['DiskSize']), | |
1117 size + | |
1118 int(DoGet(_REMOTE, '/patients/%s/attachments/1025/compressed-size' % patient)) + | |
1119 int(DoGet(_REMOTE, '/patients/%s/attachments/1026/compressed-size' % patient))) | |
1120 | |
1121 self.assertEqual(2, len(DoGet(_REMOTE, '/patients/%s/attachments' % patient))) | |
1122 self.assertEqual(hello, DoGet(_REMOTE, '/patients/%s/attachments/1025/data' % patient)) | |
1123 self.assertEqual('world', DoGet(_REMOTE, '/patients/%s/attachments/1026/data' % patient)) | |
1124 DoPost(_REMOTE, '/patients/%s/attachments/1025/verify-md5' % patient) | |
1125 DoPost(_REMOTE, '/patients/%s/attachments/1026/verify-md5' % patient) | |
1126 DoPut(_REMOTE, '/patients/%s/attachments/1026' % patient, 'world2') | |
1127 self.assertEqual('world2', DoGet(_REMOTE, '/patients/%s/attachments/1026/data' % patient)) | |
1128 | |
1129 self.assertRaises(Exception, lambda: DoDelete(_REMOTE, '/instances/%s/attachments/dicom' % instance)) | |
1130 DoDelete(_REMOTE, '/patients/%s/attachments/1025' % patient) | |
1131 self.assertEqual(int(DoGet(_REMOTE, '/patients/%s/statistics' % patient)['DiskSize']), | |
1132 int(DoGet(_REMOTE, '/statistics')['TotalDiskSize'])) | |
1133 self.assertEqual(int(DoGet(_REMOTE, '/patients/%s/statistics' % patient)['DiskSize']), | |
1134 size + int(DoGet(_REMOTE, '/patients/%s/attachments/1026/compressed-size' % patient))) | |
1135 | |
1136 self.assertEqual(1, len(DoGet(_REMOTE, '/patients/%s/attachments' % patient))) | |
1137 DoDelete(_REMOTE, '/patients/%s/attachments/1026' % patient) | |
1138 self.assertEqual(0, len(DoGet(_REMOTE, '/patients/%s/attachments' % patient))) | |
1139 | |
1140 self.assertEqual(int(DoGet(_REMOTE, '/patients/%s/statistics' % patient)['DiskSize']), size) | |
1141 self.assertEqual(size, int(DoGet(_REMOTE, '/statistics')['TotalDiskSize'])) | |
1142 | |
1143 | |
1144 def test_incoming_storescu(self): | |
1145 self.assertEqual(0, len(DoGet(_REMOTE, '/patients'))) | |
45 | 1146 subprocess.check_call([ FindExecutable('storescu'), |
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1147 _REMOTE['Server'], str(_REMOTE['DicomPort']), |
13 | 1148 GetDatabasePath('ColorTestImageJ.dcm') ]) |
1149 self.assertEqual(1, len(DoGet(_REMOTE, '/patients'))) | |
1150 | |
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1151 i = DoGet(_REMOTE, '/instances') |
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1152 self.assertEqual(1, len(i)) |
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1153 m = DoGet(_REMOTE, '/instances/%s/metadata' % i[0]) |
145 | 1154 self.assertEqual(8, len(m)) |
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1155 self.assertTrue('IndexInSeries' in m) |
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1156 self.assertTrue('ReceptionDate' in m) |
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1157 self.assertTrue('RemoteAET' in m) |
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1158 self.assertTrue('Origin' in m) |
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1159 self.assertTrue('TransferSyntax' in m) |
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1160 self.assertTrue('SopClassUid' in m) |
145 | 1161 self.assertTrue('RemoteIP' in m) |
1162 self.assertTrue('CalledAET' in m) | |
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1163 self.assertEqual(DoGet(_REMOTE, '/instances/%s/metadata/IndexInSeries' % i[0]), 1) |
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1164 self.assertEqual(DoGet(_REMOTE, '/instances/%s/metadata/Origin' % i[0]), 'DicomProtocol') |
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1165 self.assertEqual(DoGet(_REMOTE, '/instances/%s/metadata/RemoteAET' % i[0]), 'STORESCU') |
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1166 self.assertEqual(DoGet(_REMOTE, '/instances/%s/metadata/TransferSyntax' % i[0]), '1.2.840.10008.1.2.1') |
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1167 self.assertEqual(DoGet(_REMOTE, '/instances/%s/metadata/SopClassUid' % i[0]), '1.2.840.10008.5.1.4.1.1.7') |
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1168 |
13 | 1169 |
1170 def test_incoming_findscu(self): | |
1171 UploadInstance(_REMOTE, 'Multiframe.dcm') | |
1172 UploadInstance(_REMOTE, 'ColorTestImageJ.dcm') | |
1173 | |
1174 i = CallFindScu([ '-k', '0008,0052=PATIENT', '-k', '0010,0010' ]) | |
1175 patientNames = re.findall('\(0010,0010\).*?\[(.*?)\]', i) | |
1176 self.assertEqual(2, len(patientNames)) | |
1177 self.assertTrue('Test Patient BG ' in patientNames) | |
1178 self.assertTrue('Anonymized' in patientNames) | |
1179 | |
1180 i = CallFindScu([ '-k', '0008,0052=SERIES', '-k', '0008,0021' ]) | |
1181 series = re.findall('\(0008,0021\).*?\[\s*(.*?)\s*\]', i) | |
1182 self.assertEqual(2, len(series)) | |
1183 self.assertTrue('20070208' in series) | |
1184 self.assertTrue('19980312' in series) | |
1185 | |
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1186 i = CallFindScu([ '-k', '0008,0052=SERIES', '-k', '0008,0021', '-k', 'ModalitiesInStudy=MR\\XA' ]) |
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1187 series = re.findall('\(0008,0021\).*?\[\s*(.*?)\s*\]', i) |
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1188 self.assertEqual(1, len(series)) |
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1189 self.assertTrue('19980312' in series) |
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1190 |
13 | 1191 i = CallFindScu([ '-k', '0008,0052=SERIES', '-k', 'PatientName=Anonymized' ]) |
1192 series = re.findall('\(0010,0010\).*?\[\s*(.*?)\s*\]', i) | |
1193 self.assertEqual(1, len(series)) | |
1194 | |
1195 # Test the "CaseSentitivePN" flag (false by default) | |
1196 i = CallFindScu([ '-k', '0008,0052=SERIES', '-k', 'PatientName=anonymized' ]) | |
1197 series = re.findall('\(0010,0010\).*?\[\s*(.*?)\s*\]', i) | |
1198 self.assertEqual(1, len(series)) | |
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1199 |
70 | 1200 # Test range search (buggy if Orthanc <= 0.9.6) |
1201 i = CallFindScu([ '-k', '0008,0052=STUDY', '-k', 'StudyDate=19980312-' ]) | |
1202 studies = re.findall('\(0008,0020\).*?\[\s*(.*?)\s*\]', i) | |
1203 self.assertEqual(2, len(studies)) | |
1204 self.assertTrue('20070208' in studies) | |
1205 self.assertTrue('19980312' in studies) | |
1206 i = CallFindScu([ '-k', '0008,0052=STUDY', '-k', 'StudyDate=19980312-19980312' ]) | |
1207 studies = re.findall('\(0008,0020\).*?\[\s*(.*?)\s*\]', i) | |
1208 self.assertEqual(1, len(studies)) | |
1209 self.assertTrue('19980312' in studies) | |
1210 i = CallFindScu([ '-k', '0008,0052=STUDY', '-k', 'StudyDate=-19980312' ]) | |
1211 studies = re.findall('\(0008,0020\).*?\[\s*(.*?)\s*\]', i) | |
1212 self.assertEqual(1, len(studies)) | |
1213 self.assertTrue('19980312' in studies) | |
13 | 1214 |
1215 | |
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1216 def test_incoming_findscu_2(self): |
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1217 # This test fails if "LookupMode_DatabaseOnly" is used |
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1218 # (sequences are not available in this mode, and only main |
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1219 # DICOM tags are returned) |
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1220 UploadInstance(_REMOTE, 'Multiframe.dcm') |
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1221 UploadInstance(_REMOTE, 'ColorTestImageJ.dcm') |
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1222 |
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1223 # Test returning sequence values (only since Orthanc 0.9.5) |
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1224 i = CallFindScu([ '-k', '0008,0052=SERIES', '-k', '0008,2112' ]) # "ColorTestImageJ" has this sequence tag |
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1225 sequences = re.findall('\(0008,2112\)', i) |
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1226 self.assertEqual(1, len(sequences)) |
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1227 |
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1228 # Test returning a non-main DICOM tag, |
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1229 # "SecondaryCaptureDeviceID" (0018,1010), whose value is |
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1230 # "MEDPC" in "ColorTestImageJ.dcm" |
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1231 i = CallFindScu([ '-k', '0008,0052=SERIES', '-k', '0018,1010' ]) |
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1232 tags = re.findall('\(0018,1010\).*MEDPC', i) |
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1233 self.assertEqual(1, len(tags)) |
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1234 |
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1235 |
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1236 def test_incoming_findscu_3(self): |
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1237 # This test fails if "LookupMode_DatabaseOnly" or |
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1238 # "LookupMode_DiskOnAnswer" is used, as |
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1239 # "SecondaryCaptureDeviceID" (0018,1010) is not a main DICOM |
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1240 # tag, as thus a constraint cannot be applied to it |
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1241 UploadInstance(_REMOTE, 'ColorTestImageJ.dcm') |
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1242 |
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1243 i = CallFindScu([ '-k', '0008,0052=SERIES', '-k', '0018,1010=MEDPC' ]) |
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1244 sequences = re.findall('\(0018,1010\)', i) |
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1245 self.assertEqual(1, len(sequences)) |
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1246 |
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1247 |
13 | 1248 def test_incoming_movescu(self): |
1249 UploadInstance(_REMOTE, 'Multiframe.dcm') | |
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1250 |
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1251 # No matching patient, so no job is created |
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1252 self.assertEqual(0, len(DoGet(_LOCAL, '/patients'))) |
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1253 CallMoveScu([ '--patient', '-k', '0008,0052=PATIENT', '-k', 'PatientID=none' ]) |
13 | 1254 self.assertEqual(0, len(DoGet(_LOCAL, '/patients'))) |
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1255 |
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1256 # 1 Matching patient, track the job |
138 | 1257 self.assertTrue(MonitorJob(_REMOTE, lambda: CallMoveScu([ |
1258 '--patient', | |
1259 '-k', '0008,0052=PATIENT', | |
1260 '-k', 'PatientID=12345678' | |
1261 ]))) | |
13 | 1262 self.assertEqual(1, len(DoGet(_LOCAL, '/patients'))) |
1263 | |
1264 | |
1265 def test_findscu(self): | |
1266 i = UploadInstance(_REMOTE, 'DummyCT.dcm')['ID'] | |
1267 j = UploadInstance(_REMOTE, 'Issue22.dcm')['ID'] | |
1268 k = UploadInstance(_REMOTE, 'ColorTestImageJ.dcm')['ID'] | |
1269 DoPost(_REMOTE, '/modalities/orthanctest/store', str(i), 'text/plain') | |
1270 | |
1271 # Test the "find-patient" level | |
1272 p = DoPost(_REMOTE, '/modalities/orthanctest/find-patient', { }) | |
1273 self.assertEqual(1, len(p)) | |
1274 self.assertEqual('ozp00SjY2xG', p[0]['PatientID']) | |
1275 | |
1276 # Test wildcards constraints. The "LO" value representation | |
1277 # for PatientID is always case-sensitive, but the "PN" for | |
1278 # PatientName might depend on the implementation: | |
1279 # "GenerateConfigurationForTests.py" will force it to be case | |
1280 # insensitive (which was the default until Orthanc 0.8.6). | |
1281 p = DoPost(_REMOTE, '/modalities/orthanctest/find-patient', { 'PatientName' : 'K*' }) | |
1282 self.assertEqual(1, len(p)) | |
1283 | |
1284 p = DoPost(_REMOTE, '/modalities/orthanctest/find-patient', { 'PatientName' : 'k*' }) | |
1285 self.assertEqual(1, len(p)) | |
1286 | |
1287 p = DoPost(_REMOTE, '/modalities/orthanctest/find-patient', { 'PatientID' : 'ozp*' }) | |
1288 self.assertEqual(1, len(p)) | |
1289 | |
1290 p = DoPost(_REMOTE, '/modalities/orthanctest/find-patient', { 'PatientID' : 'o?p*' }) | |
1291 self.assertEqual(1, len(p)) | |
1292 | |
1293 p = DoPost(_REMOTE, '/modalities/orthanctest/find-patient', { 'PatientID' : '0?q*' }) | |
1294 self.assertEqual(0, len(p)) | |
1295 | |
1296 p = DoPost(_REMOTE, '/modalities/orthanctest/find-patient', { 'PatientName' : 'B*' }) | |
1297 self.assertEqual(0, len(p)) | |
1298 | |
1299 p = DoPost(_REMOTE, '/modalities/orthanctest/find-patient', { 'PatientName' : 'b*' }) | |
1300 self.assertEqual(0, len(p)) | |
1301 | |
1302 DoPost(_REMOTE, '/modalities/orthanctest/store', str(j), 'text/plain') | |
1303 DoPost(_REMOTE, '/modalities/orthanctest/store', str(k), 'text/plain') | |
1304 DoPost(_REMOTE, '/modalities/orthanctest/find-patient', { }) | |
1305 self.assertEqual(3, len(DoPost(_REMOTE, '/modalities/orthanctest/find-patient', { }))) | |
1306 | |
1307 p = DoPost(_REMOTE, '/modalities/orthanctest/find-patient', { 'PatientName' : 'A*' }) | |
1308 self.assertEqual(2, len(p)) | |
1309 | |
1310 # Test the "find-study" level. This is the instance "ColorTestImageJ.dcm" | |
1311 s = DoPost(_REMOTE, '/modalities/orthanctest/find-study', { 'PatientID' : 'B9uTHKOZ' }) | |
1312 self.assertEqual(1, len(s)) | |
1313 self.assertEqual('20070208', s[0]['StudyDate']) | |
1314 | |
1315 # Test range searches | |
1316 t = DoPost(_REMOTE, '/modalities/orthanctest/find-study', { 'PatientID' : 'B9uTHKOZ', | |
1317 'StudyDate' : '-20070101' }) | |
1318 self.assertEqual(0, len(t)) | |
1319 | |
1320 t = DoPost(_REMOTE, '/modalities/orthanctest/find-study', { 'PatientID' : 'B9uTHKOZ', | |
1321 'StudyDate' : '20090101-' }) | |
1322 self.assertEqual(0, len(t)) | |
1323 | |
1324 t = DoPost(_REMOTE, '/modalities/orthanctest/find-study', { 'PatientID' : 'B9uTHKOZ', | |
1325 'StudyDate' : '20070101-' }) | |
1326 self.assertEqual(1, len(t)) | |
1327 | |
1328 t = DoPost(_REMOTE, '/modalities/orthanctest/find-study', { 'PatientID' : 'B9uTHKOZ', | |
1329 'StudyDate' : '-20090101' }) | |
1330 self.assertEqual(1, len(t)) | |
1331 | |
1332 t = DoPost(_REMOTE, '/modalities/orthanctest/find-study', { 'PatientID' : 'B9uTHKOZ', | |
1333 'StudyDate' : '20070207-20070207' }) | |
1334 self.assertEqual(0, len(t)) | |
1335 | |
1336 t = DoPost(_REMOTE, '/modalities/orthanctest/find-study', { 'PatientID' : 'B9uTHKOZ', | |
1337 'StudyDate' : '20070208-20070208' }) | |
1338 self.assertEqual(1, len(t)) | |
1339 | |
1340 t = DoPost(_REMOTE, '/modalities/orthanctest/find-study', { 'PatientID' : 'B9uTHKOZ', | |
1341 'StudyDate' : '20070209-20070209' }) | |
1342 self.assertEqual(0, len(t)) | |
1343 | |
1344 # Test the ModalitiesInStudy tag | |
1345 t = DoPost(_REMOTE, '/modalities/orthanctest/find-study', { | |
1346 'PatientID' : 'B9uTHKOZ', | |
1347 'ModalitiesInStudy' : 'US' }) | |
1348 self.assertEqual(0, len(t)) | |
1349 | |
1350 t = DoPost(_REMOTE, '/modalities/orthanctest/find-study', { | |
1351 'PatientID' : 'B9uTHKOZ', | |
1352 'ModalitiesInStudy' : 'CT' }) | |
1353 self.assertEqual(1, len(t)) | |
1354 | |
1355 t = DoPost(_REMOTE, '/modalities/orthanctest/find-study', { | |
1356 'PatientID' : 'B9uTHKOZ', | |
1357 'ModalitiesInStudy' : 'US\\CT' }) | |
1358 self.assertEqual(1, len(t)) | |
1359 | |
1360 # Test the "find-series" level | |
1361 t = DoPost(_REMOTE, '/modalities/orthanctest/find-series', { | |
1362 'PatientID' : 'B9uTHKOZ', | |
1363 'StudyInstanceUID' : s[0]['StudyInstanceUID'] }) | |
1364 self.assertEqual(1, len(t)) | |
1365 | |
1366 # Test "\" separator | |
1367 t = DoPost(_REMOTE, '/modalities/orthanctest/find-series', { | |
1368 'PatientID' : 'B9uTHKOZ', | |
1369 'StudyInstanceUID' : s[0]['StudyInstanceUID'], | |
1370 'Modality' : 'MR\\CT\\US' }) | |
1371 self.assertEqual(1, len(t)) | |
1372 | |
1373 t = DoPost(_REMOTE, '/modalities/orthanctest/find-series', { | |
1374 'PatientID' : 'B9uTHKOZ', | |
1375 'StudyInstanceUID' : s[0]['StudyInstanceUID'], | |
1376 'Modality' : 'MR\\US' }) | |
1377 self.assertEqual(0, len(t)) | |
1378 | |
1379 | |
1380 def test_update_modalities(self): | |
1381 try: | |
1382 DoDelete(_REMOTE, '/modalities/toto') | |
1383 except: | |
1384 pass | |
1385 try: | |
1386 DoDelete(_REMOTE, '/modalities/tata') | |
1387 except: | |
1388 pass | |
1389 self.assertRaises(Exception, lambda: DoGet(_REMOTE, '/modalities/toto')) | |
1390 DoPut(_REMOTE, '/modalities/toto', [ "STORESCP", "localhost", 2000 ]) | |
116 | 1391 DoPut(_REMOTE, '/modalities/tata', [ "STORESCP", "localhost", 2000, 'MedInria' ]) # check backward compatiblity with obsolete manufacturer |
1392 DoDelete(_REMOTE, '/modalities/tata') | |
124 | 1393 DoPut(_REMOTE, '/modalities/tata', [ "STORESCP", "localhost", 2000, 'GenericNoUniversalWildcard' ]) |
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1394 DoDelete(_REMOTE, '/modalities/tata') |
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1395 DoPut(_REMOTE, '/modalities/tata', [ "STORESCP", "localhost", 2000, 'GenericNoWildcardInDates' ]) |
128 | 1396 modalitiesReadback = DoGet(_REMOTE, '/modalities?expand') |
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1397 self.assertEqual('STORESCP', modalitiesReadback['tata']['AET']) |
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1398 self.assertEqual('localhost', modalitiesReadback['tata']['Host']) |
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1399 self.assertEqual(2000, modalitiesReadback['tata']['Port']) |
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1400 self.assertEqual('GenericNoWildcardInDates', modalitiesReadback['tata']['Manufacturer']) |
116 | 1401 self.assertRaises(Exception, lambda: DoPut(_REMOTE, '/modalities/toto', [ "STORESCP", "localhost", 2000, 'InvalidManufacturerName' ])) |
13 | 1402 self.assertTrue('store' in DoGet(_REMOTE, '/modalities/toto')) |
1403 self.assertTrue('store' in DoGet(_REMOTE, '/modalities/tata')) | |
1404 DoDelete(_REMOTE, '/modalities/toto') | |
1405 DoDelete(_REMOTE, '/modalities/tata') | |
1406 self.assertRaises(Exception, lambda: DoGet(_REMOTE, '/modalities/toto')) | |
1407 self.assertRaises(Exception, lambda: DoGet(_REMOTE, '/modalities/tata')) | |
1408 | |
1409 | |
1410 def test_update_peers(self): | |
1411 # curl -X PUT http://localhost:8042/peers/toto -d '["http://localhost:8042/"]' -v | |
1412 try: | |
1413 DoDelete(_REMOTE, '/peers/toto') | |
1414 except: | |
1415 pass | |
1416 try: | |
1417 DoDelete(_REMOTE, '/peers/tata') | |
1418 except: | |
1419 pass | |
1420 self.assertRaises(Exception, lambda: DoGet(_REMOTE, '/peers/toto')) | |
1421 DoPut(_REMOTE, '/peers/toto', [ 'http://localhost:8042/' ]) | |
214 | 1422 DoPut(_REMOTE, '/peers/tata', { 'Url': 'http://localhost:8042/', |
1423 'Username': 'user', | |
1424 'Password' : 'pass', | |
1425 'RemoteSelf' : 'self' }) | |
128 | 1426 self.assertTrue('tata' in DoGet(_REMOTE, '/peers')) |
1427 peersReadback = DoGet(_REMOTE, '/peers?expand') | |
1428 self.assertEqual('http://localhost:8042/', peersReadback['tata']['Url']) | |
1429 self.assertEqual('user', peersReadback['tata']['Username']) | |
214 | 1430 |
1431 if IsOrthancVersionAbove(_REMOTE, 1, 5, 4): | |
1432 self.assertEqual(None, peersReadback['tata']['Password']) # make sure no sensitive data is included | |
1433 self.assertFalse(peersReadback['tata']['Pkcs11']) # make sure no sensitive data is included | |
1434 self.assertEqual('self', peersReadback['tata']['RemoteSelf']) | |
1435 else: | |
1436 self.assertFalse('Password' in peersReadback['tata']) # make sure no sensitive data is included | |
1437 self.assertFalse('Pkcs11' in peersReadback['tata']) # make sure no sensitive data is included | |
1438 self.assertFalse('RemoteSelf' in peersReadback['tata']) | |
1439 | |
128 | 1440 self.assertFalse('CertificateFile' in peersReadback['tata']) # make sure no sensitive data is included |
1441 self.assertFalse('CertificateKeyFile' in peersReadback['tata']) # make sure no sensitive data is included | |
1442 self.assertFalse('CertificateKeyPassword' in peersReadback['tata']) # make sure no sensitive data is included | |
214 | 1443 |
13 | 1444 self.assertRaises(Exception, lambda: DoPut(_REMOTE, '/peers/toto', [ 'http://localhost:8042/', 'a' ])) |
1445 self.assertRaises(Exception, lambda: DoPut(_REMOTE, '/peers/toto', [ 'http://localhost:8042/', 'a', 'b', 'c' ])) | |
1446 self.assertTrue('store' in DoGet(_REMOTE, '/peers/toto')) | |
1447 self.assertTrue('store' in DoGet(_REMOTE, '/peers/tata')) | |
1448 DoDelete(_REMOTE, '/peers/toto') | |
1449 DoDelete(_REMOTE, '/peers/tata') | |
1450 self.assertRaises(Exception, lambda: DoGet(_REMOTE, '/peers/toto')) | |
1451 self.assertRaises(Exception, lambda: DoGet(_REMOTE, '/peers/tata')) | |
1452 | |
1453 | |
1454 def test_mesterhazy_modification(self): | |
1455 # When I modify a series ( eg. curl | |
1456 # http://localhost:8042/series/uidhere/modify -X POST -d | |
1457 # '{"Replace":{"SeriesDate":"19990101"}}' ) the modified | |
1458 # series is added to a new Study, instead of the existing | |
1459 # Study. Fixed in Orthanc 0.7.5 | |
1460 | |
1461 u = UploadInstance(_REMOTE, 'DummyCT.dcm') | |
1462 study = 'b9c08539-26f93bde-c81ab0d7-bffaf2cb-a4d0bdd0' | |
1463 series = 'f2635388-f01d497a-15f7c06b-ad7dba06-c4c599fe' | |
1464 | |
1465 modified = DoPost(_REMOTE, '/series/%s/modify' % series, | |
1466 json.dumps({ "Replace" : { "SeriesDate" : "19990101" }})) | |
1467 | |
1468 self.assertEqual(study, DoGet(_REMOTE, '/series/%s' % modified['ID']) ['ParentStudy']) | |
1469 | |
1470 | |
1471 def test_create(self): | |
1472 i = DoPost(_REMOTE, '/tools/create-dicom', | |
1473 json.dumps({ | |
1474 'PatientName' : 'Jodogne', | |
1475 'Modality' : 'CT', | |
58 | 1476 'SOPClassUID' : '1.2.840.10008.5.1.4.1.1.1', |
13 | 1477 'PixelData' : 'data:image/png;base64,iVBORw0KGgoAAAANSUhEUgAAAAUAAAAFCAYAAACNbyblAAAAHElEQVQI12P4//8/w38GIAXDIBKE0DHxgljNBAAO9TXL0Y4OHwAAAABJRU5ErkJggg==' # red dot in RGBA |
1478 })) | |
1479 | |
1480 self.assertEqual('Jodogne', DoGet(_REMOTE, '/instances/%s/content/PatientName' % i['ID']).strip()) | |
1481 self.assertEqual('CT', DoGet(_REMOTE, '/instances/%s/content/Modality' % i['ID']).strip()) | |
1482 | |
1483 png = GetImage(_REMOTE, '/instances/%s/preview' % i['ID']) | |
1484 self.assertEqual((5, 5), png.size) | |
1485 | |
38 | 1486 j = DoGet(_REMOTE, i['Path']) |
1487 self.assertEqual('Instance', j['Type']) | |
1488 self.assertEqual(j['ID'], i['ID']) | |
1489 | |
13 | 1490 |
1491 def test_pilates(self): | |
1492 # "SCU failed error when accessing orthanc with osirix" by | |
1493 # Pilates Agentur (Mar 10, 2014 at 9:33 PM) | |
1494 i = UploadInstance(_REMOTE, 'PilatesArgenturGEUltrasoundOsiriX.dcm')['ID'] | |
1495 self.assertEqual(0, len(DoGet(_LOCAL, '/patients'))) | |
1496 j = DoPost(_REMOTE, '/modalities/orthanctest/store', str(i), 'text/plain') | |
1497 self.assertEqual(1, len(DoGet(_LOCAL, '/patients'))) | |
1498 | |
1499 | |
1500 def test_shared_tags(self): | |
1501 a = UploadInstance(_REMOTE, 'Knee/T1/IM-0001-0001.dcm')['ID'] | |
1502 b = UploadInstance(_REMOTE, 'Knee/T1/IM-0001-0002.dcm')['ID'] | |
1503 p = DoGet(_REMOTE, '/patients')[0] | |
1504 | |
1505 self.assertTrue('0010,0010' in DoGet(_REMOTE, '/patients/%s/shared-tags' % p)) | |
1506 self.assertTrue('PatientName' in DoGet(_REMOTE, '/patients/%s/shared-tags?simplify' % p)) | |
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1507 self.assertTrue('0010,0010' in DoGet(_REMOTE, '/patients/%s/shared-tags?short' % p)) |
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1508 |
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1509 self.assertEqual('KNEE', DoGet(_REMOTE, '/patients/%s/shared-tags' % p)['0010,0010']['Value']) |
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1510 self.assertEqual('KNEE', DoGet(_REMOTE, '/patients/%s/shared-tags?simplify' % p)['PatientName']) |
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1511 self.assertEqual('KNEE', DoGet(_REMOTE, '/patients/%s/shared-tags?short' % p)['0010,0010']) |
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1512 |
13 | 1513 self.assertTrue('0008,1030' in DoGet(_REMOTE, '/patients/%s/shared-tags' % p)) |
1514 self.assertTrue('StudyDescription' in DoGet(_REMOTE, '/patients/%s/shared-tags?simplify' % p)) | |
1515 self.assertTrue('0008,103e' in DoGet(_REMOTE, '/patients/%s/shared-tags' % p)) | |
1516 self.assertTrue('SeriesDescription' in DoGet(_REMOTE, '/patients/%s/shared-tags?simplify' % p)) | |
1517 self.assertFalse('0008,0018' in DoGet(_REMOTE, '/patients/%s/shared-tags' % p)) | |
1518 self.assertFalse('SOPInstanceUID' in DoGet(_REMOTE, '/patients/%s/shared-tags?simplify' % p)) | |
1519 | |
1520 self.assertTrue('0008,0018' in DoGet(_REMOTE, '/instances/%s/tags' % a)) | |
1521 self.assertTrue('SOPInstanceUID' in DoGet(_REMOTE, '/instances/%s/tags?simplify' % a)) | |
1522 | |
1523 | |
1524 def test_modules(self): | |
1525 a = UploadInstance(_REMOTE, 'Knee/T1/IM-0001-0001.dcm')['ID'] | |
1526 p = DoGet(_REMOTE, '/patients')[0] | |
1527 s = DoGet(_REMOTE, '/studies')[0] | |
1528 t = DoGet(_REMOTE, '/series')[0] | |
1529 | |
1530 self.assertTrue('0010,0010' in DoGet(_REMOTE, '/patients/%s/module' % p)) | |
1531 self.assertTrue('PatientName' in DoGet(_REMOTE, '/patients/%s/module?simplify' % p)) | |
1532 self.assertTrue('0010,0010' in DoGet(_REMOTE, '/studies/%s/module-patient' % p)) | |
1533 self.assertTrue('PatientName' in DoGet(_REMOTE, '/studies/%s/module-patient?simplify' % p)) | |
1534 self.assertTrue('0008,1030' in DoGet(_REMOTE, '/studies/%s/module' % s)) | |
1535 self.assertTrue('StudyDescription' in DoGet(_REMOTE, '/studies/%s/module?simplify' % s)) | |
1536 self.assertTrue('0008,103e' in DoGet(_REMOTE, '/series/%s/module' % p)) | |
1537 self.assertTrue('SeriesDescription' in DoGet(_REMOTE, '/series/%s/module?simplify' % p)) | |
1538 self.assertTrue('0008,0018' in DoGet(_REMOTE, '/instances/%s/module' % a)) | |
1539 self.assertTrue('SOPInstanceUID' in DoGet(_REMOTE, '/instances/%s/module?simplify' % a)) | |
1540 | |
1541 | |
1542 def test_auto_directory(self): | |
1543 a = UploadInstance(_REMOTE, 'Knee/T1/IM-0001-0001.dcm')['ID'] | |
1544 self.assertTrue('now' in DoGet(_REMOTE, '/tools')) | |
1545 self.assertTrue('dicom-conformance' in DoGet(_REMOTE, '/tools')) | |
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diff
changeset
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1546 self.assertTrue('invalidate-tags' in DoGet(_REMOTE, '/tools')) |
13 | 1547 self.assertTrue(len(DoGet(_REMOTE, '/tools/dicom-conformance')) > 1000) |
1548 self.assertTrue('orthanctest' in DoGet(_REMOTE, '/modalities')) | |
1549 self.assertTrue('echo' in DoGet(_REMOTE, '/modalities/orthanctest')) | |
1550 self.assertTrue('find' in DoGet(_REMOTE, '/modalities/orthanctest')) | |
1551 self.assertTrue('find-instance' in DoGet(_REMOTE, '/modalities/orthanctest')) | |
1552 self.assertTrue('find-patient' in DoGet(_REMOTE, '/modalities/orthanctest')) | |
1553 self.assertTrue('find-series' in DoGet(_REMOTE, '/modalities/orthanctest')) | |
1554 self.assertTrue('find-study' in DoGet(_REMOTE, '/modalities/orthanctest')) | |
1555 self.assertTrue('store' in DoGet(_REMOTE, '/modalities/orthanctest')) | |
1556 self.assertTrue('store' in DoGet(_REMOTE, '/peers/peer')) | |
1557 self.assertTrue('matlab' in DoGet(_REMOTE, '/instances/%s/frames/0' % a)) | |
79 | 1558 self.assertTrue('raw' in DoGet(_REMOTE, '/instances/%s/frames/0' % a)) |
13 | 1559 self.assertRaises(Exception, lambda: DoGet(_REMOTE, '/tools/nope')) |
28 | 1560 self.assertRaises(Exception, lambda: DoGet(_REMOTE, '/nope')) |
1561 self.assertRaises(Exception, lambda: DoGet(_REMOTE, '/nope/nope.html')) | |
1562 self.assertEqual(404, DoGetRaw(_REMOTE, '/nope')[0].status) | |
1563 self.assertEqual(404, DoGetRaw(_REMOTE, '/nope/nope.html')[0].status) | |
13 | 1564 |
1565 | |
1566 def test_echo(self): | |
1567 DoPost(_REMOTE, '/modalities/orthanctest/echo') | |
1568 | |
1569 | |
1570 def test_xml(self): | |
1571 json = DoGet(_REMOTE, '/tools', headers = { 'accept' : 'application/json' }) | |
1572 xml = minidom.parseString(DoGet(_REMOTE, '/tools', headers = { 'accept' : 'application/xml' })) | |
1573 items = xml.getElementsByTagName('root')[0].getElementsByTagName('item') | |
1574 self.assertEqual(len(items), len(json)) | |
1575 | |
1576 self.assertTrue('dicom-conformance' in json) | |
1577 | |
1578 ok = False | |
1579 for i in items: | |
1580 if i.childNodes[0].data == 'dicom-conformance': | |
1581 ok = True | |
1582 self.assertTrue(ok) | |
1583 | |
1584 | |
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diff
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|
1585 def test_googlecode_issue_16(self): |
13 | 1586 i = UploadInstance(_REMOTE, 'Issue16.dcm')['ID'] |
1587 t = DoGet(_REMOTE, '/instances/%s/tags?simplify' % i)['FrameIncrementPointer'] | |
1588 self.assertEqual('0018,1063', t) | |
1589 | |
1590 | |
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diff
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|
1591 def test_googlecode_issue_22(self): |
13 | 1592 s = UploadInstance(_REMOTE, 'Issue22.dcm')['ID'] |
1593 a = [ | |
1594 "f804691f62197040438f4627c6b994f1", # Frame 0 | |
1595 "c69eee9a51eea3e8611e82e578897254", | |
1596 "315666be83e2d0111c77bc0996d84901", | |
1597 "3e27aa959d911172c48a1436443c72b1", | |
1598 "958642c9e7e9d232d3869faff546058c", | |
1599 "5e7ea8e3e4230cae707d143481355c59", | |
1600 "eda37f83558d858a596175aed8b2ad47", | |
1601 "486713bd2895c4ecbe0e97715ac7f80a", | |
1602 "091ef729eb169e67da8a0faa9631f9a8", | |
1603 "5aa2b8c7ffe0a483efaa8e12417686ca", | |
1604 "e2f39e85896fe58876654b94cd0b5013", | |
1605 "6fd2129e4950abbe1be053bc814d5da8", | |
1606 "c3331a8ba7a757f3d423735ab7fa81f9", | |
1607 "746f808582156734dd6b6fdfd3a0b72c", | |
1608 "8075ea2b227a70c60ea6b7b75a6bb190", | |
1609 "806b8b3e300c615099c11a5ec23465aa", | |
1610 "7c836aa298ba6eef96434579af631a11", | |
1611 "a0357dc9f4f72d73a885c33d7c287446", | |
1612 "f25ba3be1cc7d7fad95706adc199ea7d", | |
1613 "8b114c526b8cbed6cad8a3248b7b480c", | |
1614 "44e6670f127e612a2b4aa60a0d207698", | |
1615 "b8945f90fe02facf2ace24ca1ecbe0a5", | |
1616 "95c796c2fa8f59018b15cf2987b1f79b", | |
1617 "ce0a51ab30224205b44920221dc27351", # Frame 23 | |
1618 ] | |
1619 | |
1620 self.assertEqual(24, len(DoGet(_REMOTE, '/instances/%s/frames' % s))) | |
1621 self.assertRaises(Exception, lambda: DoGet(_REMOTE, '/instances/%s/frames/24/preview' % s)) | |
1622 | |
1623 for i in range(len(a)): | |
1624 self.assertEqual(a[i], ComputeMD5(DoGet(_REMOTE, '/instances/%s/frames/%d/preview' % (s, i)))) | |
1625 | |
1626 | |
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1627 def test_googlecode_issue_19(self): |
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1628 # This is an image with "YBR_FULL" photometric interpretation, it is not supported by Orthanc |
13 | 1629 # gdcmconv -i /home/jodogne/DICOM/GdcmDatabase/US_DataSet/HDI5000_US/3EAF5E01 -w -o Issue19.dcm |
1630 | |
1631 a = UploadInstance(_REMOTE, 'Issue19.dcm')['ID'] | |
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1632 self.assertRaises(Exception, lambda: DoGet(_REMOTE, '/instances/941ad3c8-05d05b88-560459f9-0eae0e20-6cddd533/preview')) |
13 | 1633 |
1634 | |
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1635 def test_googlecode_issue_37(self): |
13 | 1636 # Same test for issues 35 and 37. Fixed in Orthanc 0.9.1 |
1637 u = UploadInstance(_REMOTE, 'Beaufix/IM-0001-0001.dcm')['ID'] | |
1638 | |
1639 a = DoPost(_REMOTE, '/tools/find', { 'Level' : 'Series', | |
1640 'CaseSensitive' : True, | |
1641 'Query' : { 'StationName' : 'SMR4-MP3' }}) | |
1642 self.assertEqual(1, len(a)) | |
14 | 1643 |
1644 | |
1645 def test_rest_find(self): | |
1646 # Upload 8 instances | |
1647 for i in range(2): | |
1648 UploadInstance(_REMOTE, 'Brainix/Flair/IM-0001-000%d.dcm' % (i + 1)) | |
1649 UploadInstance(_REMOTE, 'Brainix/Epi/IM-0001-000%d.dcm' % (i + 1)) | |
1650 UploadInstance(_REMOTE, 'Knee/T1/IM-0001-000%d.dcm' % (i + 1)) | |
1651 UploadInstance(_REMOTE, 'Knee/T2/IM-0001-000%d.dcm' % (i + 1)) | |
1652 | |
1653 a = DoPost(_REMOTE, '/tools/find', { 'Level' : 'Patient', | |
1654 'CaseSensitive' : False, | |
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1655 'Query' : { 'PatientName' : 'BRAINIX' }}) |
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1656 self.assertEqual(1, len(a)) |
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1657 |
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1658 a = DoPost(_REMOTE, '/tools/find', { 'Level' : 'Patient', |
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1659 'CaseSensitive' : False, |
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1660 'Query' : { 'PatientName' : 'BRAINIX\\KNEE\\NOPE' }}) |
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1661 self.assertEqual(2, len(a)) |
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1662 |
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1663 a = DoPost(_REMOTE, '/tools/find', { 'Level' : 'Patient', |
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1664 'CaseSensitive' : False, |
14 | 1665 'Query' : { 'PatientName' : '*n*' }}) |
1666 self.assertEqual(2, len(a)) | |
1667 | |
1668 a = DoPost(_REMOTE, '/tools/find', { 'Level' : 'Patient', | |
1669 'CaseSensitive' : True, | |
1670 'Query' : { 'PatientName' : '*n*' }}) | |
1671 self.assertEqual(0, len(a)) | |
1672 | |
1673 a = DoPost(_REMOTE, '/tools/find', { 'Expand' : True, | |
1674 'Level' : 'Patient', | |
1675 'CaseSensitive' : False, | |
1676 'Query' : { 'PatientName' : '*ne*' }}) | |
1677 self.assertEqual(1, len(a)) | |
1678 self.assertEqual('20080822', a[0]['MainDicomTags']['PatientBirthDate']) | |
1679 | |
1680 a = DoPost(_REMOTE, '/tools/find', { 'Level' : 'Patient', | |
1681 'CaseSensitive' : True, | |
1682 'Query' : { 'PatientName' : '*ne*' }}) | |
1683 self.assertEqual(0, len(a)) | |
1684 | |
1685 a = DoPost(_REMOTE, '/tools/find', { 'Level' : 'Study', | |
1686 'CaseSensitive' : True, | |
1687 'Query' : { 'PatientName' : '*NE*' }}) | |
1688 self.assertEqual(1, len(a)) | |
1689 | |
1690 a = DoPost(_REMOTE, '/tools/find', { 'Level' : 'Series', | |
1691 'CaseSensitive' : True, | |
1692 'Query' : { 'PatientName' : '*NE*' }}) | |
1693 self.assertEqual(2, len(a)) | |
1694 | |
1695 a = DoPost(_REMOTE, '/tools/find', { 'Level' : 'Instance', | |
1696 'CaseSensitive' : True, | |
1697 'Query' : { 'PatientName' : '*NE*' }}) | |
1698 self.assertEqual(4, len(a)) | |
1699 | |
1700 a = DoPost(_REMOTE, '/tools/find', { 'Level' : 'Patient', 'Query' : { }}) | |
1701 self.assertEqual(2, len(a)) | |
1702 | |
1703 a = DoPost(_REMOTE, '/tools/find', { 'Level' : 'Study', 'Query' : { }}) | |
1704 self.assertEqual(2, len(a)) | |
1705 | |
1706 a = DoPost(_REMOTE, '/tools/find', { 'Level' : 'Series', 'Query' : { }}) | |
1707 self.assertEqual(4, len(a)) | |
1708 | |
1709 a = DoPost(_REMOTE, '/tools/find', { 'Level' : 'Instance', 'Query' : { }}) | |
1710 self.assertEqual(8, len(a)) | |
1711 | |
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1712 a = DoPost(_REMOTE, '/tools/find', { 'Level' : 'Study', |
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1713 'Expand' : True, |
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1714 'Query' : { 'StudyDate' : '20061201-20061201' }}) |
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1715 self.assertEqual(1, len(a)) |
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1716 self.assertEqual('BRAINIX', a[0]['PatientMainDicomTags']['PatientName']) |
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1717 |
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1718 a = DoPost(_REMOTE, '/tools/find', { 'Level' : 'Study', |
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1719 'Expand' : True, |
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1720 'Query' : { 'StudyDate' : '20061201-20091201' }}) |
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1721 self.assertEqual(2, len(a)) |
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1722 for i in range(2): |
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1723 self.assertTrue(a[i]['PatientMainDicomTags']['PatientName'] in ['BRAINIX', 'KNEE']) |
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1724 |
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1725 a = DoPost(_REMOTE, '/tools/find', { 'Level' : 'Study', |
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1726 'Query' : { 'StudyDate' : '20061202-20061202' }}) |
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1727 self.assertEqual(0, len(a)) |
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1728 |
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1729 a = DoPost(_REMOTE, '/tools/find', { 'Level' : 'Study', |
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1730 'Expand' : True, |
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1731 'Query' : { 'StudyDate' : '-20061201' }}) |
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1732 self.assertEqual(1, len(a)) |
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1733 self.assertEqual('BRAINIX', a[0]['PatientMainDicomTags']['PatientName']) |
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1734 |
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1735 a = DoPost(_REMOTE, '/tools/find', { 'Level' : 'Study', |
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1736 'Expand' : True, |
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1737 'Query' : { 'StudyDate' : '-20051201' }}) |
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1738 self.assertEqual(0, len(a)) |
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1739 |
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1740 a = DoPost(_REMOTE, '/tools/find', { 'Level' : 'Study', |
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1741 'Expand' : True, |
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1742 'Query' : { 'StudyDate' : '20061201-' }}) |
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1743 self.assertEqual(2, len(a)) |
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1744 for i in range(2): |
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1745 self.assertTrue(a[i]['PatientMainDicomTags']['PatientName'] in ['BRAINIX', 'KNEE']) |
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1746 |
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1747 a = DoPost(_REMOTE, '/tools/find', { 'Level' : 'Study', |
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1748 'Expand' : True, |
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1749 'Query' : { 'StudyDate' : '20061202-' }}) |
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1750 self.assertEqual(1, len(a)) |
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1751 self.assertEqual('KNEE', a[0]['PatientMainDicomTags']['PatientName']) |
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1752 |
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1753 a = DoPost(_REMOTE, '/tools/find', { 'Level' : 'Study', |
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1754 'Expand' : True, |
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1755 'Query' : { 'StudyDate' : '20080819-' }}) |
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1756 self.assertEqual(1, len(a)) |
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1757 self.assertEqual('KNEE', a[0]['PatientMainDicomTags']['PatientName']) |
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1758 |
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1759 a = DoPost(_REMOTE, '/tools/find', { 'Level' : 'Study', |
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1760 'Expand' : True, |
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1761 'Query' : { 'StudyDate' : '20080820-' }}) |
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1762 self.assertEqual(0, len(a)) |
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1763 |
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1764 |
14 | 1765 |
1766 def test_rest_query_retrieve(self): | |
1767 self.assertEqual(0, len(DoGet(_REMOTE, '/patients'))) | |
1768 | |
1769 # Upload 8 instances | |
1770 for i in range(2): | |
1771 UploadInstance(_REMOTE, 'Brainix/Flair/IM-0001-000%d.dcm' % (i + 1)) | |
1772 UploadInstance(_REMOTE, 'Brainix/Epi/IM-0001-000%d.dcm' % (i + 1)) | |
1773 UploadInstance(_REMOTE, 'Knee/T1/IM-0001-000%d.dcm' % (i + 1)) | |
1774 UploadInstance(_REMOTE, 'Knee/T2/IM-0001-000%d.dcm' % (i + 1)) | |
1775 | |
1776 self.assertEqual(2, len(DoGet(_REMOTE, '/patients'))) | |
1777 for p in DoGet(_REMOTE, '/patients'): | |
1778 DoPost(_REMOTE, '/modalities/orthanctest/store', p) | |
1779 DoDelete(_REMOTE, '/patients/%s' % p) | |
1780 | |
1781 for q in DoGet(_REMOTE, '/queries'): | |
1782 DoDelete(_REMOTE, '/queries/%s' % q) | |
1783 | |
1784 self.assertEqual(0, len(DoGet(_REMOTE, '/patients'))) | |
1785 self.assertEqual(0, len(DoGet(_REMOTE, '/queries'))) | |
1786 a = DoPost(_REMOTE, '/modalities/orthanctest/query', { 'Level' : 'Series', | |
27 | 1787 'Query' : { |
1788 'PatientName' : '*NE*', | |
1789 'StudyDate' : '*', | |
1790 }})['ID'] | |
14 | 1791 self.assertEqual(1, len(DoGet(_REMOTE, '/queries'))) |
1792 | |
1793 b = DoGet(_REMOTE, '/queries/%s' % a) | |
1794 self.assertTrue('answers' in b) | |
1795 self.assertTrue('level' in b) | |
1796 self.assertTrue('modality' in b) | |
1797 self.assertTrue('query' in b) | |
1798 self.assertTrue('retrieve' in b) | |
1799 self.assertEqual('Series', DoGet(_REMOTE, '/queries/%s/level' % a)) | |
1800 self.assertEqual('orthanctest', DoGet(_REMOTE, '/queries/%s/modality' % a)) | |
1801 | |
1802 q = DoGet(_REMOTE, '/queries/%s/query?simplify' % a) | |
27 | 1803 self.assertEqual(2, len(q)) |
14 | 1804 self.assertTrue('PatientName' in q) |
27 | 1805 self.assertTrue('StudyDate' in q) |
14 | 1806 self.assertEqual('*NE*', q['PatientName']) |
27 | 1807 self.assertEqual('*', q['StudyDate']) |
14 | 1808 |
1809 self.assertEqual(2, len(DoGet(_REMOTE, '/queries/%s/answers' % a))) | |
1810 | |
1811 s = DoGet(_REMOTE, '/queries/%s/answers/0' % a) | |
1812 self.assertTrue('content' in s) | |
1813 self.assertTrue('retrieve' in s) | |
1814 | |
1815 s = DoGet(_REMOTE, '/queries/%s/answers/0/content?simplify' % a) | |
1816 self.assertEqual('887', s['PatientID']) | |
1817 self.assertEqual('2.16.840.1.113669.632.20.121711.10000160881', s['StudyInstanceUID']) | |
1818 | |
1819 self.assertEqual(0, len(DoGet(_REMOTE, '/patients'))) | |
1820 DoPost(_REMOTE, '/queries/%s/answers/0/retrieve' % a, 'ORTHANC') | |
1821 self.assertEqual(1, len(DoGet(_REMOTE, '/patients'))) | |
1822 self.assertEqual(1, len(DoGet(_REMOTE, '/studies'))) | |
1823 self.assertEqual(1, len(DoGet(_REMOTE, '/series'))) | |
1824 self.assertEqual(2, len(DoGet(_REMOTE, '/instances'))) | |
1825 | |
112 | 1826 DoPost(_REMOTE, '/queries/%s/answers/1/retrieve' % a, 'ORTHANC', 'application/json') # make sure the issue #36 is fixed (query/retrieve Rest API: /retrieve route shall accept application/json content type) |
14 | 1827 self.assertEqual(1, len(DoGet(_REMOTE, '/patients'))) |
1828 self.assertEqual(1, len(DoGet(_REMOTE, '/studies'))) | |
1829 self.assertEqual(2, len(DoGet(_REMOTE, '/series'))) | |
1830 self.assertEqual(4, len(DoGet(_REMOTE, '/instances'))) | |
1831 | |
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1832 # New in Orthanc 1.4.3 |
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1833 s = DoGet(_REMOTE, '/queries/%s/answers?expand&simplify' % a) |
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1834 self.assertEqual(2, len(s)) |
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1835 for i in range(2): |
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1836 self.assertEqual('SERIES', s[i]['QueryRetrieveLevel']) |
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1837 self.assertEqual('887', s[i]['PatientID']) |
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1838 self.assertEqual('2.16.840.1.113669.632.20.121711.10000160881', s[i]['StudyInstanceUID']) |
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1839 |
14 | 1840 DoDelete(_REMOTE, '/queries/%s' % a) |
1841 self.assertEqual(0, len(DoGet(_REMOTE, '/queries'))) | |
1842 | |
1843 | |
1844 def test_parent(self): | |
1845 u = UploadInstance(_REMOTE, 'DummyCT.dcm')['ID'] | |
1846 patient = '6816cb19-844d5aee-85245eba-28e841e6-2414fae2' | |
1847 study = 'b9c08539-26f93bde-c81ab0d7-bffaf2cb-a4d0bdd0' | |
1848 series = 'f2635388-f01d497a-15f7c06b-ad7dba06-c4c599fe' | |
1849 instance = '66a662ce-7430e543-bad44d47-0dc5a943-ec7a538d' | |
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1850 self.assertEqual(instance, u) |
14 | 1851 |
1852 a = DoGet(_REMOTE, '/studies/%s/patient' % study) | |
1853 self.assertEqual('Patient', a['Type']) | |
1854 self.assertEqual(patient, a['ID']) | |
1855 | |
1856 a = DoGet(_REMOTE, '/series/%s/patient' % series) | |
1857 self.assertEqual('Patient', a['Type']) | |
1858 self.assertEqual(patient, a['ID']) | |
1859 | |
1860 a = DoGet(_REMOTE, '/series/%s/study' % series) | |
1861 self.assertEqual('Study', a['Type']) | |
1862 self.assertEqual(study, a['ID']) | |
1863 | |
1864 a = DoGet(_REMOTE, '/instances/%s/patient' % instance) | |
1865 self.assertEqual('Patient', a['Type']) | |
1866 self.assertEqual(patient, a['ID']) | |
1867 | |
1868 a = DoGet(_REMOTE, '/instances/%s/study' % instance) | |
1869 self.assertEqual('Study', a['Type']) | |
1870 self.assertEqual(study, a['ID']) | |
1871 | |
1872 a = DoGet(_REMOTE, '/instances/%s/series' % instance) | |
1873 self.assertEqual('Series', a['Type']) | |
1874 self.assertEqual(series, a['ID']) | |
1875 | |
1876 | |
1877 def test_shanon(self): | |
1878 def Anonymize(instance, replacements = {}): | |
119 | 1879 return DoPost(_REMOTE, '/instances/%s/anonymize' % instance, { |
1880 'Replace' : replacements, | |
1881 'Force' : True, | |
1882 }, 'application/json') | |
14 | 1883 |
1884 self.assertEqual(0, len(DoGet(_REMOTE, '/instances'))) | |
1885 u = UploadInstance(_REMOTE, 'DummyCT.dcm')['ID'] | |
1886 self.assertEqual(1, len(DoGet(_REMOTE, '/instances'))) | |
1887 | |
1888 tags = [ 'PatientID', 'StudyInstanceUID', 'SeriesInstanceUID', 'SOPInstanceUID', 'DeidentificationMethod' ] | |
1889 ids = [ 'ozp00SjY2xG', | |
1890 '1.2.840.113619.2.176.2025.1499492.7391.1171285944.390', | |
1891 '1.2.840.113619.2.176.2025.1499492.7391.1171285944.394', | |
1892 '1.2.840.113619.2.176.2025.1499492.7040.1171286242.109' ] | |
1893 | |
1894 a = ExtractDicomTags(Anonymize(u), tags) | |
1895 for i in range(4): | |
1896 self.assertNotEqual(ids[i], a[i]) | |
1897 self.assertTrue(a[4].startswith('Orthanc')) | |
1898 | |
1899 a = ExtractDicomTags(Anonymize(u, { 'PatientName' : 'toto' }), tags) | |
1900 for i in range(4): | |
1901 self.assertNotEqual(ids[i], a[i]) | |
1902 self.assertFalse(a[4].startswith('Orthanc')) | |
1903 | |
1904 a = ExtractDicomTags(Anonymize(u, { 'SOPInstanceUID' : 'instance' }), tags) | |
1905 self.assertEqual('instance', a[3]) | |
1906 self.assertFalse(a[4].startswith('Orthanc')) | |
1907 | |
1908 a = ExtractDicomTags(Anonymize(u, { 'SeriesInstanceUID' : 'series' }), tags) | |
1909 self.assertEqual('series', a[2]) | |
1910 self.assertFalse(a[4].startswith('Orthanc')) | |
1911 | |
1912 a = ExtractDicomTags(Anonymize(u, { 'StudyInstanceUID' : 'study' }), tags) | |
1913 self.assertEqual('study', a[1]) | |
1914 self.assertFalse(a[4].startswith('Orthanc')) | |
1915 | |
1916 a = ExtractDicomTags(Anonymize(u, { 'PatientID' : 'patient' }), tags) | |
1917 self.assertEqual('patient', a[0]) | |
1918 self.assertFalse(a[4].startswith('Orthanc')) | |
1919 | |
1920 a = ExtractDicomTags(Anonymize(u, { 'PatientID' : 'patient', | |
1921 'StudyInstanceUID' : 'study', | |
1922 'SeriesInstanceUID' : 'series', | |
1923 'SOPInstanceUID' : 'instance' }), tags) | |
1924 self.assertEqual('patient', a[0]) | |
1925 self.assertFalse(a[4].startswith('Orthanc')) | |
1926 | |
1927 self.assertEqual(1, len(DoGet(_REMOTE, '/instances'))) | |
1928 | |
1929 | |
1930 def test_shanon_2(self): | |
1931 def Modify(instance, replacements = {}): | |
119 | 1932 return DoPost(_REMOTE, '/instances/%s/modify' % instance, { |
1933 'Replace' : replacements, | |
1934 'Force': True, | |
1935 }, 'application/json') | |
14 | 1936 |
1937 self.assertEqual(0, len(DoGet(_REMOTE, '/instances'))) | |
1938 u = UploadInstance(_REMOTE, 'DummyCT.dcm')['ID'] | |
1939 self.assertEqual(1, len(DoGet(_REMOTE, '/instances'))) | |
1940 | |
1941 tags = [ 'PatientID', 'StudyInstanceUID', 'SeriesInstanceUID', 'SOPInstanceUID', 'DeidentificationMethod' ] | |
1942 ids = [ 'ozp00SjY2xG', | |
1943 '1.2.840.113619.2.176.2025.1499492.7391.1171285944.390', | |
1944 '1.2.840.113619.2.176.2025.1499492.7391.1171285944.394', | |
1945 '1.2.840.113619.2.176.2025.1499492.7040.1171286242.109' ] | |
1946 | |
1947 a = ExtractDicomTags(Modify(u), tags) | |
1948 self.assertEqual(ids[0], a[0]) | |
1949 self.assertEqual(ids[1], a[1]) | |
1950 self.assertEqual(ids[2], a[2]) | |
1951 self.assertNotEqual(ids[3], a[3]) | |
1952 self.assertEqual(0, len(a[4])) | |
1953 | |
1954 a = ExtractDicomTags(Modify(u, { 'SOPInstanceUID' : 'instance' }), tags) | |
1955 self.assertEqual(ids[0], a[0]) | |
1956 self.assertEqual(ids[1], a[1]) | |
1957 self.assertEqual(ids[2], a[2]) | |
1958 self.assertEqual('instance', a[3]) | |
1959 | |
1960 a = ExtractDicomTags(Modify(u, { 'SeriesInstanceUID' : 'series' }), tags) | |
1961 self.assertEqual(ids[0], a[0]) | |
1962 self.assertEqual(ids[1], a[1]) | |
1963 self.assertEqual('series', a[2]) | |
1964 self.assertNotEqual(ids[3], a[3]) | |
1965 | |
1966 a = ExtractDicomTags(Modify(u, { 'StudyInstanceUID' : 'study' }), tags) | |
1967 self.assertEqual(ids[0], a[0]) | |
1968 self.assertEqual('study', a[1]) | |
1969 self.assertNotEqual(ids[2], a[2]) | |
1970 self.assertNotEqual(ids[3], a[3]) | |
1971 | |
1972 a = ExtractDicomTags(Modify(u, { 'PatientID' : 'patient' }), tags) | |
1973 self.assertEqual('patient', a[0]) | |
1974 self.assertNotEqual(ids[1], a[1]) | |
1975 self.assertNotEqual(ids[2], a[2]) | |
1976 self.assertNotEqual(ids[3], a[3]) | |
1977 | |
1978 a = ExtractDicomTags(Modify(u, { 'PatientID' : 'patient', | |
1979 'StudyInstanceUID' : 'study', | |
1980 'SeriesInstanceUID' : 'series', | |
1981 'SOPInstanceUID' : 'instance' }), tags) | |
1982 self.assertEqual('patient', a[0]) | |
1983 self.assertEqual('study', a[1]) | |
1984 self.assertEqual('series', a[2]) | |
1985 self.assertEqual('instance', a[3]) | |
1986 | |
1987 self.assertEqual(1, len(DoGet(_REMOTE, '/instances'))) | |
1988 | |
1989 | |
1990 def test_instances_tags(self): | |
1991 a = UploadInstance(_REMOTE, 'Knee/T1/IM-0001-0001.dcm')['ID'] | |
1992 b = UploadInstance(_REMOTE, 'Knee/T2/IM-0001-0001.dcm')['ID'] | |
1993 #a = UploadInstance(_REMOTE, 'Cardiac/MR.X.1.2.276.0.7230010.3.1.4.2831157719.2256.1336386937.676343')['ID'] | |
1994 #b = UploadInstance(_REMOTE, 'Cardiac/MR.X.1.2.276.0.7230010.3.1.4.2831157719.2256.1336386925.676329')['ID'] | |
1995 | |
1996 i = DoGet(_REMOTE, '/patients/%s/instances-tags?simplify' % DoGet(_REMOTE, '/patients')[0]) | |
1997 self.assertEqual(2, len(i)) | |
1998 self.assertEqual('887', i[i.keys()[0]]['PatientID']) | |
1999 self.assertEqual('887', i[i.keys()[1]]['PatientID']) | |
2000 | |
2001 i = DoGet(_REMOTE, '/patients/%s/instances-tags?simplify' % DoGet(_REMOTE, '/studies')[0]) | |
2002 self.assertEqual(2, len(i)) | |
2003 self.assertEqual('887', i[i.keys()[0]]['PatientID']) | |
2004 self.assertEqual('887', i[i.keys()[1]]['PatientID']) | |
2005 | |
2006 self.assertEqual(2, len(DoGet(_REMOTE, '/series'))) | |
2007 i = DoGet(_REMOTE, '/patients/%s/instances-tags?simplify' % DoGet(_REMOTE, '/series')[0]) | |
2008 self.assertEqual(1, len(i)) | |
2009 self.assertEqual('887', i[i.keys()[0]]['PatientID']) | |
2010 | |
2011 i = DoGet(_REMOTE, '/patients/%s/instances-tags?simplify' % DoGet(_REMOTE, '/series')[1]) | |
2012 self.assertEqual(1, len(i)) | |
2013 self.assertEqual('887', i[i.keys()[0]]['PatientID']) | |
2014 | |
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2015 i = DoGet(_REMOTE, '/patients/%s/instances-tags?short' % DoGet(_REMOTE, '/series')[1]) |
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2016 self.assertEqual(1, len(i)) |
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2017 self.assertEqual('887', i[i.keys()[0]]['0010,0020']) |
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2018 |
14 | 2019 |
2020 def test_lookup(self): | |
2021 a = DoPost(_REMOTE, '/tools/lookup', 'ozp00SjY2xG') | |
2022 self.assertEqual(0, len(a)) | |
2023 | |
2024 UploadInstance(_REMOTE, 'DummyCT.dcm') | |
2025 | |
2026 a = DoPost(_REMOTE, '/tools/lookup', 'ozp00SjY2xG') | |
2027 self.assertEqual(1, len(a)) | |
2028 self.assertEqual('Patient', a[0]['Type']) | |
2029 self.assertEqual('6816cb19-844d5aee-85245eba-28e841e6-2414fae2', a[0]['ID']) | |
2030 self.assertEqual('/patients/%s' % a[0]['ID'], a[0]['Path']) | |
2031 | |
2032 a = DoPost(_REMOTE, '/tools/lookup', '1.2.840.113619.2.176.2025.1499492.7391.1171285944.390') | |
2033 self.assertEqual(1, len(a)) | |
2034 self.assertEqual('Study', a[0]['Type']) | |
2035 self.assertEqual('b9c08539-26f93bde-c81ab0d7-bffaf2cb-a4d0bdd0', a[0]['ID']) | |
2036 self.assertEqual('/studies/%s' % a[0]['ID'], a[0]['Path']) | |
2037 | |
2038 a = DoPost(_REMOTE, '/tools/lookup', '1.2.840.113619.2.176.2025.1499492.7391.1171285944.394') | |
2039 self.assertEqual(1, len(a)) | |
2040 self.assertEqual('Series', a[0]['Type']) | |
2041 self.assertEqual('f2635388-f01d497a-15f7c06b-ad7dba06-c4c599fe', a[0]['ID']) | |
2042 self.assertEqual('/series/%s' % a[0]['ID'], a[0]['Path']) | |
2043 | |
2044 a = DoPost(_REMOTE, '/tools/lookup', '1.2.840.113619.2.176.2025.1499492.7040.1171286242.109') | |
2045 self.assertEqual(1, len(a)) | |
2046 self.assertEqual('Instance', a[0]['Type']) | |
2047 self.assertEqual('66a662ce-7430e543-bad44d47-0dc5a943-ec7a538d', a[0]['ID']) | |
2048 self.assertEqual('/instances/%s' % a[0]['ID'], a[0]['Path']) | |
2049 | |
2050 DropOrthanc(_REMOTE) | |
2051 a = DoPost(_REMOTE, '/tools/lookup', '3113719P') | |
2052 self.assertEqual(0, len(a)) | |
2053 | |
15 | 2054 |
2055 def test_autorouting(self): | |
2056 knee1 = 'Knee/T1/IM-0001-0001.dcm' | |
2057 knee2 = 'Knee/T2/IM-0001-0002.dcm' | |
2058 other = 'Brainix/Flair/IM-0001-0001.dcm' | |
2059 | |
2060 # Check that this version is >= 0.8.0 | |
2061 self.assertTrue(IsDefinedInLua(_REMOTE, '_InitializeJob')) | |
2062 self.assertTrue('orthanctest' in DoGet(_REMOTE, '/modalities')) | |
2063 | |
2064 UploadInstance(_REMOTE, knee1) | |
2065 self.assertEqual(0, len(DoGet(_LOCAL, '/instances'))) | |
2066 | |
2067 DropOrthanc(_REMOTE) | |
2068 DropOrthanc(_LOCAL) | |
174 | 2069 InstallLuaScriptFromPath(_REMOTE, 'Lua/Autorouting.lua') |
15 | 2070 UploadInstance(_REMOTE, knee1) |
2071 UploadInstance(_REMOTE, knee2) | |
2072 UploadInstance(_REMOTE, other) | |
2073 WaitEmpty(_REMOTE) | |
174 | 2074 UninstallLuaCallbacks(_REMOTE) |
15 | 2075 self.assertEqual(3, len(DoGet(_LOCAL, '/instances'))) |
2076 | |
2077 DropOrthanc(_REMOTE) | |
2078 DropOrthanc(_LOCAL) | |
174 | 2079 InstallLuaScriptFromPath(_REMOTE, 'Lua/AutoroutingConditional.lua') |
15 | 2080 UploadInstance(_REMOTE, knee1) |
2081 UploadInstance(_REMOTE, knee2) | |
2082 UploadInstance(_REMOTE, other) | |
2083 WaitEmpty(_REMOTE) | |
174 | 2084 UninstallLuaCallbacks(_REMOTE) |
15 | 2085 self.assertEqual(2, len(DoGet(_LOCAL, '/instances'))) |
2086 | |
2087 DropOrthanc(_REMOTE) | |
2088 DropOrthanc(_LOCAL) | |
174 | 2089 InstallLuaScriptFromPath(_REMOTE, 'Lua/AutoroutingModification.lua') |
15 | 2090 UploadInstance(_REMOTE, knee1) |
2091 WaitEmpty(_REMOTE) | |
174 | 2092 UninstallLuaCallbacks(_REMOTE) |
15 | 2093 i = DoGet(_LOCAL, '/instances') |
2094 self.assertEqual(1, len(i)) | |
2095 | |
2096 with tempfile.NamedTemporaryFile(delete = True) as f: | |
2097 f.write(DoGet(_LOCAL, '/instances/%s/file' % i[0])) | |
2098 f.flush() | |
45 | 2099 routed = subprocess.check_output([ FindExecutable('dcm2xml'), f.name ]) |
15 | 2100 self.assertEqual('My Medical Device', re.search('"StationName">(.*?)<', routed).group(1).strip()) |
2101 self.assertEqual(None, re.search('"MilitaryRank"', routed)) | |
2102 self.assertEqual(None, re.search('"0051,0010"', routed)) # A private tag | |
17 | 2103 |
2104 | |
2105 def test_storescu_rf(self): | |
2106 i = UploadInstance(_REMOTE, 'KarstenHilbertRF.dcm')['ID'] | |
2107 self.assertEqual(0, len(DoGet(_LOCAL, '/instances'))) | |
2108 j = DoPost(_REMOTE, '/modalities/orthanctest/store', str(i), 'text/plain') | |
2109 self.assertEqual(1, len(DoGet(_LOCAL, '/instances'))) | |
18 | 2110 |
2111 | |
2112 def test_anonymize_instance(self): | |
2113 def AnonymizeAndUpload(instanceId, parameters): | |
2114 return DoPost(_REMOTE, '/instances', DoPost(_REMOTE, '/instances/%s/anonymize' % instanceId, parameters, | |
2115 'application/json'), 'application/dicom')['ID'] | |
2116 | |
2117 def ModifyAndUpload(instanceId, parameters): | |
2118 return DoPost(_REMOTE, '/instances', DoPost(_REMOTE, '/instances/%s/modify' % instanceId, parameters, | |
2119 'application/json'), 'application/dicom')['ID'] | |
2120 | |
2121 a = UploadInstance(_REMOTE, 'PrivateMDNTags.dcm')['ID'] | |
2122 s1 = DoGet(_REMOTE, '/instances/%s/content/PatientName' % a) | |
2123 s2 = DoGet(_REMOTE, '/instances/%s/content/00e1-10c2' % a) # Some private tag | |
2124 s3 = DoGet(_REMOTE, '/instances/%s/content/StudyDescription' % a) | |
2125 s4 = DoGet(_REMOTE, '/instances/%s/content/SeriesDescription' % a) | |
2126 s5 = DoGet(_REMOTE, '/instances/%s/content/InstitutionName' % a) | |
2127 | |
2128 b = AnonymizeAndUpload(a, '{}') | |
2129 self.assertNotEqual(s1, DoGet(_REMOTE, '/instances/%s/content/PatientName' % b)) | |
2130 self.assertRaises(Exception, lambda: DoGet(_REMOTE, '/instances/%s/content/00e1-10c2' % b)) | |
2131 | |
2132 # Keep private tag (only OK since Orthanc 0.8.0) | |
2133 b = AnonymizeAndUpload(a, '{"Keep":["00e1-10c2"]}') | |
2134 self.assertNotEqual(s1, DoGet(_REMOTE, '/instances/%s/content/PatientName' % b)) | |
2135 self.assertEqual(s2, DoGet(_REMOTE, '/instances/%s/content/00e1-10c2' % b)) | |
2136 | |
2137 b = AnonymizeAndUpload(a, '{"Keep":["00e1,10c2","PatientName"]}') | |
2138 self.assertEqual(s1, DoGet(_REMOTE, '/instances/%s/content/PatientName' % b)) | |
2139 self.assertEqual(s2, DoGet(_REMOTE, '/instances/%s/content/00e1-10c2' % b)) | |
2140 | |
2141 b = AnonymizeAndUpload(a, '{"Keep":["PatientName"],"Replace":{"00e1,10c2":"Hello"}}') | |
2142 self.assertEqual(s1, DoGet(_REMOTE, '/instances/%s/content/PatientName' % b)) | |
2143 self.assertTrue(DoGet(_REMOTE, '/instances/%s/content/00e1-10c2' % b).startswith('Hello')) | |
2144 | |
2145 # Examples from the Wiki | |
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2146 b = AnonymizeAndUpload(a, '{"Replace":{"PatientName":"hello","0010-0020":"world"},"Keep":["StudyDescription", "SeriesDescription"],"KeepPrivateTags": true,"Force":true}') |
18 | 2147 self.assertEqual('hello', DoGet(_REMOTE, '/instances/%s/content/0010-0010' % b).strip()) |
2148 self.assertEqual('world', DoGet(_REMOTE, '/instances/%s/content/PatientID' % b).strip()) | |
2149 self.assertEqual(s3, DoGet(_REMOTE, '/instances/%s/content/0008,1030' % b)) | |
2150 self.assertEqual(s4, DoGet(_REMOTE, '/instances/%s/content/0008,103e' % b)) | |
2151 self.assertEqual(s4, DoGet(_REMOTE, '/instances/%s/content/0008-103E' % b)) | |
2152 self.assertEqual(s2, DoGet(_REMOTE, '/instances/%s/content/00e1-10c2' % b)) | |
2153 DoGet(_REMOTE, '/instances/%s/content/InstitutionName' % a) | |
2154 self.assertRaises(Exception, lambda: DoGet(_REMOTE, '/instances/%s/content/InstitutionName' % b)) | |
2155 | |
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2156 b = ModifyAndUpload(a, '{"Replace":{"PatientName":"hello","PatientID":"world"},"Remove":["InstitutionName"],"RemovePrivateTags": true,"Force":true}') |
18 | 2157 self.assertEqual('hello', DoGet(_REMOTE, '/instances/%s/content/0010-0010' % b).strip()) |
2158 self.assertEqual('world', DoGet(_REMOTE, '/instances/%s/content/PatientID' % b).strip()) | |
2159 self.assertEqual(s3, DoGet(_REMOTE, '/instances/%s/content/0008,1030' % b)) | |
2160 self.assertEqual(s4, DoGet(_REMOTE, '/instances/%s/content/0008,103e' % b)) | |
2161 self.assertRaises(Exception, lambda: DoGet(_REMOTE, '/instances/%s/content/00e1-10c2' % b)) | |
2162 self.assertRaises(Exception, lambda: DoGet(_REMOTE, '/instances/%s/content/InstitutionName' % b)) | |
2163 | |
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117
diff
changeset
|
2164 b = ModifyAndUpload(a, '{"Replace":{"PatientName":"hello","PatientID":"world"},"Force":true}') |
18 | 2165 self.assertEqual('hello', DoGet(_REMOTE, '/instances/%s/content/0010-0010' % b).strip()) |
2166 self.assertEqual('world', DoGet(_REMOTE, '/instances/%s/content/PatientID' % b).strip()) | |
2167 self.assertEqual(s2, DoGet(_REMOTE, '/instances/%s/content/00e1,10c2' % b)) | |
2168 self.assertEqual(s3, DoGet(_REMOTE, '/instances/%s/content/0008,1030' % b)) | |
2169 self.assertEqual(s4, DoGet(_REMOTE, '/instances/%s/content/0008-103E' % b)) | |
2170 self.assertEqual(s5, DoGet(_REMOTE, '/instances/%s/content/InstitutionName' % b)) | |
2171 | |
2172 | |
2173 # Test modify non-existing | |
2174 i = DoPost(_REMOTE, '/tools/create-dicom', | |
2175 json.dumps({ | |
2176 'PatientName' : 'Jodogne', | |
2177 'Modality' : 'CT', | |
2178 }))['ID'] | |
2179 | |
2180 self.assertEqual('Jodogne', DoGet(_REMOTE, '/instances/%s/content/PatientName' % i).strip()) | |
2181 self.assertRaises(Exception, lambda: DoGet(_REMOTE, '/instances/%s/content/StudyDescription' % i)) | |
2182 self.assertEqual('CT', DoGet(_REMOTE, '/instances/%s/content/Modality' % i).strip()) | |
2183 | |
2184 b = ModifyAndUpload(i, '{"Replace":{"StudyDescription":"hello","Modality":"world"}}') | |
2185 self.assertEqual('Jodogne', DoGet(_REMOTE, '/instances/%s/content/PatientName' % b).strip()) | |
2186 self.assertEqual('hello', DoGet(_REMOTE, '/instances/%s/content/StudyDescription' % b).strip()) | |
2187 self.assertEqual('world', DoGet(_REMOTE, '/instances/%s/content/Modality' % b).strip()) | |
2188 | |
21
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diff
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|
2189 |
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|
2190 def test_incoming_jpeg(self): |
61
967d44407308
test UnknownSopClassAccepted option
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parents:
60
diff
changeset
|
2191 def storescu(image, acceptUnknownSopClassUid): |
967d44407308
test UnknownSopClassAccepted option
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parents:
60
diff
changeset
|
2192 if acceptUnknownSopClassUid: |
967d44407308
test UnknownSopClassAccepted option
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60
diff
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|
2193 tmp = [ '-xf', GetDatabasePath('UnknownSopClassUid.cfg'), 'Default' ] |
967d44407308
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diff
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|
2194 else: |
967d44407308
test UnknownSopClassAccepted option
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parents:
60
diff
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|
2195 tmp = [ '-xs' ] |
967d44407308
test UnknownSopClassAccepted option
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60
diff
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|
2196 |
21
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18
diff
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|
2197 with open(os.devnull, 'w') as FNULL: |
61
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60
diff
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|
2198 subprocess.check_call([ FindExecutable('storescu') ] + tmp + |
967d44407308
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Sebastien Jodogne <s.jodogne@gmail.com>
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60
diff
changeset
|
2199 [ _REMOTE['Server'], str(_REMOTE['DicomPort']), |
967d44407308
test UnknownSopClassAccepted option
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
60
diff
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|
2200 GetDatabasePath(image) ], |
21
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18
diff
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|
2201 stderr = FNULL) |
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diff
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|
2202 |
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|
2203 self.assertEqual(0, len(DoGet(_REMOTE, '/patients'))) |
174 | 2204 InstallLuaScriptFromPath(_REMOTE, 'Lua/TransferSyntaxDisable.lua') |
61
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60
diff
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|
2205 self.assertRaises(Exception, lambda: storescu('Knix/Loc/IM-0001-0001.dcm', False)) |
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Sebastien Jodogne <s.jodogne@gmail.com>
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60
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|
2206 self.assertRaises(Exception, lambda: storescu('UnknownSopClassUid.dcm', True)) |
21
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diff
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|
2207 self.assertEqual(0, len(DoGet(_REMOTE, '/patients'))) |
174 | 2208 InstallLuaScriptFromPath(_REMOTE, 'Lua/TransferSyntaxEnable.lua') |
62
f9c4ce95756f
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Sebastien Jodogne <s.jodogne@gmail.com>
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61
diff
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|
2209 DoPost(_REMOTE, '/tools/execute-script', "print('All special transfer syntaxes are now accepted')") |
61
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60
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|
2210 storescu('Knix/Loc/IM-0001-0001.dcm', False) |
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60
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|
2211 storescu('UnknownSopClassUid.dcm', True) |
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60
diff
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|
2212 self.assertEqual(2, len(DoGet(_REMOTE, '/patients'))) |
21
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18
diff
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|
2213 |
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18
diff
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|
2214 |
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parents:
18
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|
2215 def test_storescu_jpeg(self): |
2a29bcff60a7
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18
diff
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|
2216 self.assertEqual(0, len(DoGet(_REMOTE, '/exports')['Exports'])) |
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parents:
18
diff
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|
2217 |
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18
diff
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|
2218 knixStudy = 'b9c08539-26f93bde-c81ab0d7-bffaf2cb-a4d0bdd0' |
64 | 2219 i = UploadInstance(_REMOTE, 'Knix/Loc/IM-0001-0001.dcm')['ID'] |
2220 | |
2221 # This is JPEG lossless | |
136
5634ef96fcc5
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Sebastien Jodogne <s.jodogne@gmail.com>
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133
diff
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|
2222 self.assertEqual('1.2.840.10008.1.2.4.70', DoGet(_REMOTE, '/instances/%s/header' % i)['0002,0010']['Value']) |
64 | 2223 self.assertEqual('1.2.840.10008.1.2.4.70', DoGet(_REMOTE, '/instances/%s/header?simplify' % i)['TransferSyntaxUID']) |
136
5634ef96fcc5
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diff
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|
2224 self.assertEqual('1.2.840.10008.1.2.4.70', DoGet(_REMOTE, '/instances/%s/header?short' % i)['0002,0010']) |
64 | 2225 |
21
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parents:
18
diff
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|
2226 UploadInstance(_REMOTE, 'Knix/Loc/IM-0001-0002.dcm') |
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Sebastien Jodogne <s.jodogne@gmail.com>
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18
diff
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|
2227 UploadInstance(_REMOTE, 'Knix/Loc/IM-0001-0003.dcm') |
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parents:
18
diff
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|
2228 |
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18
diff
changeset
|
2229 a = UploadInstance(_REMOTE, 'Brainix/Flair/IM-0001-0001.dcm')['ID'] |
2a29bcff60a7
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parents:
18
diff
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|
2230 b = UploadInstance(_REMOTE, 'ColorTestImageJ.dcm')['ID'] |
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parents:
18
diff
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|
2231 self.assertEqual(0, len(DoGet(_LOCAL, '/instances'))) |
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parents:
18
diff
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|
2232 DoPost(_REMOTE, '/modalities/orthanctest/store', [ knixStudy, a, b ]) |
2a29bcff60a7
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Sebastien Jodogne <s.jodogne@gmail.com>
parents:
18
diff
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|
2233 self.assertEqual(5, len(DoGet(_LOCAL, '/instances'))) |
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parents:
18
diff
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|
2234 |
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18
diff
changeset
|
2235 self.assertEqual(3, len(DoGet(_REMOTE, '/exports')['Exports'])) |
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Sebastien Jodogne <s.jodogne@gmail.com>
parents:
18
diff
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|
2236 |
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18
diff
changeset
|
2237 DropOrthanc(_REMOTE) |
2a29bcff60a7
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parents:
18
diff
changeset
|
2238 self.assertEqual(0, len(DoGet(_REMOTE, '/exports')['Exports'])) |
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parents:
18
diff
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|
2239 |
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18
diff
changeset
|
2240 |
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parents:
18
diff
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|
2241 def test_pixel_data(self): |
2a29bcff60a7
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Sebastien Jodogne <s.jodogne@gmail.com>
parents:
18
diff
changeset
|
2242 jpeg = UploadInstance(_REMOTE, 'Knix/Loc/IM-0001-0001.dcm')['ID'] |
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Sebastien Jodogne <s.jodogne@gmail.com>
parents:
18
diff
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|
2243 color = UploadInstance(_REMOTE, 'ColorTestImageJ.dcm')['ID'] |
2a29bcff60a7
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Sebastien Jodogne <s.jodogne@gmail.com>
parents:
18
diff
changeset
|
2244 phenix = UploadInstance(_REMOTE, 'Phenix/IM-0001-0001.dcm')['ID'] |
2a29bcff60a7
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Sebastien Jodogne <s.jodogne@gmail.com>
parents:
18
diff
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|
2245 |
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Sebastien Jodogne <s.jodogne@gmail.com>
parents:
18
diff
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|
2246 phenixSize = 358 * 512 * 2 |
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parents:
18
diff
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|
2247 colorSize = 1000 * 1000 * 3 |
2a29bcff60a7
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parents:
18
diff
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|
2248 jpegSize = 51918 |
2a29bcff60a7
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parents:
18
diff
changeset
|
2249 |
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18
diff
changeset
|
2250 self.assertEqual(1, len(DoGet(_REMOTE, '/instances/%s/content/7fe0-0010' % phenix))) |
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18
diff
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|
2251 self.assertEqual(1, len(DoGet(_REMOTE, '/instances/%s/content/7fe0-0010' % color))) |
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18
diff
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|
2252 self.assertEqual(2, len(DoGet(_REMOTE, '/instances/%s/content/7fe0-0010' % jpeg))) |
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Sebastien Jodogne <s.jodogne@gmail.com>
parents:
18
diff
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|
2253 |
2a29bcff60a7
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Sebastien Jodogne <s.jodogne@gmail.com>
parents:
18
diff
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|
2254 self.assertEqual(0, len(DoGet(_REMOTE, '/instances/%s/content/7fe0-0010/0' % jpeg))) |
2a29bcff60a7
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Sebastien Jodogne <s.jodogne@gmail.com>
parents:
18
diff
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|
2255 self.assertEqual(jpegSize, len(DoGet(_REMOTE, '/instances/%s/content/7fe0-0010/1' % jpeg))) |
2a29bcff60a7
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Sebastien Jodogne <s.jodogne@gmail.com>
parents:
18
diff
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|
2256 |
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parents:
18
diff
changeset
|
2257 self.assertEqual(phenixSize, len(DoGet(_REMOTE, '/instances/%s/content/7fe0-0010/0' % phenix))) |
2a29bcff60a7
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Sebastien Jodogne <s.jodogne@gmail.com>
parents:
18
diff
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|
2258 self.assertEqual(colorSize, len(DoGet(_REMOTE, '/instances/%s/content/7fe0-0010/0' % color))) |
2a29bcff60a7
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Sebastien Jodogne <s.jodogne@gmail.com>
parents:
18
diff
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|
2259 |
2a29bcff60a7
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Sebastien Jodogne <s.jodogne@gmail.com>
parents:
18
diff
changeset
|
2260 |
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Sebastien Jodogne <s.jodogne@gmail.com>
parents:
18
diff
changeset
|
2261 def test_decode_brainix(self): |
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parents:
18
diff
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|
2262 brainix = [ |
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Sebastien Jodogne <s.jodogne@gmail.com>
parents:
18
diff
changeset
|
2263 UploadInstance(_REMOTE, 'Brainix/Epi/IM-0001-0001.dcm')['ID'], # (*) |
2a29bcff60a7
tests of image decoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
18
diff
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|
2264 UploadInstance(_REMOTE, 'Formats/JpegLossless.dcm')['ID'], # JPEG-LS, same as (*) (since Orthanc 0.7.6) |
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Sebastien Jodogne <s.jodogne@gmail.com>
parents:
18
diff
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|
2265 UploadInstance(_REMOTE, 'Formats/Jpeg.dcm')['ID'], # JPEG, same as (*) (since Orthanc 0.7.6) |
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18
diff
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|
2266 ] |
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18
diff
changeset
|
2267 h = '6fb11b932d535c2be04beabd99793ff8' |
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18
diff
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|
2268 maxValue = 426.0 |
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diff
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|
2269 |
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diff
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|
2270 truth = Image.open(GetDatabasePath('Formats/Brainix.png')) |
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18
diff
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|
2271 for i in brainix: |
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18
diff
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|
2272 self.AssertSameImages(truth.getdata(), '/instances/%s/image-int16' % i) |
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18
diff
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|
2273 self.AssertSameImages(truth.getdata(), '/instances/%s/image-uint16' % i) |
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|
2274 |
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|
2275 truth2 = map(lambda x: min(255, x), truth.getdata()) |
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18
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|
2276 for i in brainix: |
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18
diff
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|
2277 self.AssertSameImages(truth2, '/instances/%s/image-uint8' % i) |
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|
2278 |
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|
2279 truth2 = map(lambda x: x * 255.0 / maxValue, truth.getdata()) |
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|
2280 for i in brainix: |
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diff
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|
2281 self.AssertSameImages(truth2, '/instances/%s/preview' % i) |
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diff
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|
2282 |
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|
2283 for i in brainix: |
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diff
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|
2284 self.assertEqual(h, ComputeMD5(DoGet(_REMOTE, '/instances/%s/matlab' % i))) |
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diff
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|
2285 |
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18
diff
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|
2286 |
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|
2287 def test_decode_color(self): |
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|
2288 imagej = UploadInstance(_REMOTE, 'ColorTestImageJ.dcm')['ID'] |
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|
2289 color = UploadInstance(_REMOTE, 'ColorTestMalaterre.dcm')['ID'] |
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|
2290 |
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|
2291 for i in [ imagej, color ]: |
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|
2292 for j in [ 'image-uint8', 'image-uint16', 'image-int16' ]: |
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diff
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|
2293 self.assertRaises(Exception, lambda: DoGet(_REMOTE, '/instances/%s/%s' % (i, j))) |
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parents:
18
diff
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|
2294 |
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diff
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|
2295 self.assertEqual('c14c687f7a1ea9fe022479fc87c67274', ComputeMD5(DoGet(_REMOTE, '/instances/%s/preview' % imagej))) |
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tests of image decoding
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parents:
18
diff
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|
2296 self.assertEqual('a87d122918a56f803bcfe9d2586b9125', ComputeMD5(DoGet(_REMOTE, '/instances/%s/preview' % color))) |
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Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
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|
2297 |
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18
diff
changeset
|
2298 self.assertEqual('30cc46bfa7aba77a40e4178f6184c25a', ComputeMD5(DoGet(_REMOTE, '/instances/%s/matlab' % imagej))) |
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tests of image decoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
18
diff
changeset
|
2299 self.assertEqual('ff195005cef06b59666fd220a9b4cd9a', ComputeMD5(DoGet(_REMOTE, '/instances/%s/matlab' % color))) |
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Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
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|
2300 |
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Sebastien Jodogne <s.jodogne@gmail.com>
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18
diff
changeset
|
2301 |
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Sebastien Jodogne <s.jodogne@gmail.com>
parents:
18
diff
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|
2302 def test_decode_rf(self): |
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tests of image decoding
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parents:
18
diff
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|
2303 rf = UploadInstance(_REMOTE, 'KarstenHilbertRF.dcm')['ID'] |
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Sebastien Jodogne <s.jodogne@gmail.com>
parents:
18
diff
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|
2304 truth = Image.open(GetDatabasePath('Formats/KarstenHilbertRF.png')) |
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Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
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|
2305 |
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18
diff
changeset
|
2306 self.AssertSameImages(truth.getdata(), '/instances/%s/image-uint8' % rf) |
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Sebastien Jodogne <s.jodogne@gmail.com>
parents:
18
diff
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|
2307 self.AssertSameImages(truth.getdata(), '/instances/%s/image-uint16' % rf) |
2a29bcff60a7
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Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
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|
2308 self.AssertSameImages(truth.getdata(), '/instances/%s/image-int16' % rf) |
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Sebastien Jodogne <s.jodogne@gmail.com>
parents:
18
diff
changeset
|
2309 self.AssertSameImages(truth.getdata(), '/instances/%s/preview' % rf) |
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Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
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|
2310 |
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Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
changeset
|
2311 self.assertEqual('42254d70efd2f4a1b8f3455909689f0e', ComputeMD5(DoGet(_REMOTE, '/instances/%s/matlab' % rf))) |
2a29bcff60a7
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Sebastien Jodogne <s.jodogne@gmail.com>
parents:
18
diff
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|
2312 |
2a29bcff60a7
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Sebastien Jodogne <s.jodogne@gmail.com>
parents:
18
diff
changeset
|
2313 |
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Sebastien Jodogne <s.jodogne@gmail.com>
parents:
18
diff
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|
2314 def test_decode_multiframe(self): |
2a29bcff60a7
tests of image decoding
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parents:
18
diff
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|
2315 mf = UploadInstance(_REMOTE, 'Multiframe.dcm')['ID'] |
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Sebastien Jodogne <s.jodogne@gmail.com>
parents:
18
diff
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|
2316 |
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Sebastien Jodogne <s.jodogne@gmail.com>
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|
2317 # Test the first frame |
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Sebastien Jodogne <s.jodogne@gmail.com>
parents:
18
diff
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|
2318 truth = Image.open(GetDatabasePath('Formats/Multiframe0.png')) |
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parents:
18
diff
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|
2319 self.AssertSameImages(truth.getdata(), '/instances/%s/image-uint8' % mf) |
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parents:
18
diff
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|
2320 self.AssertSameImages(truth.getdata(), '/instances/%s/image-uint16' % mf) |
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parents:
18
diff
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|
2321 self.AssertSameImages(truth.getdata(), '/instances/%s/image-int16' % mf) |
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Sebastien Jodogne <s.jodogne@gmail.com>
parents:
18
diff
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|
2322 self.AssertSameImages(truth.getdata(), '/instances/%s/preview' % mf) |
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Sebastien Jodogne <s.jodogne@gmail.com>
parents:
18
diff
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|
2323 self.assertEqual('9812b99d93bbcd4e7684ded089b5dfb3', ComputeMD5(DoGet(_REMOTE, '/instances/%s/matlab' % mf))) |
2a29bcff60a7
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Sebastien Jodogne <s.jodogne@gmail.com>
parents:
18
diff
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|
2324 |
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Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
changeset
|
2325 self.AssertSameImages(truth.getdata(), '/instances/%s/frames/0/image-uint16' % mf) |
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Sebastien Jodogne <s.jodogne@gmail.com>
parents:
18
diff
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|
2326 |
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Sebastien Jodogne <s.jodogne@gmail.com>
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diff
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|
2327 # Test the last frame |
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tests of image decoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
18
diff
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|
2328 truth = Image.open(GetDatabasePath('Formats/Multiframe75.png')) |
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Sebastien Jodogne <s.jodogne@gmail.com>
parents:
18
diff
changeset
|
2329 self.AssertSameImages(truth.getdata(), '/instances/%s/frames/75/image-uint16' % mf) |
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Sebastien Jodogne <s.jodogne@gmail.com>
parents:
18
diff
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|
2330 |
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Sebastien Jodogne <s.jodogne@gmail.com>
parents:
18
diff
changeset
|
2331 |
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Sebastien Jodogne <s.jodogne@gmail.com>
parents:
18
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|
2332 def test_decode_signed(self): |
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Sebastien Jodogne <s.jodogne@gmail.com>
parents:
18
diff
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|
2333 signed = UploadInstance(_REMOTE, 'SignedCT.dcm')['ID'] |
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Sebastien Jodogne <s.jodogne@gmail.com>
parents:
18
diff
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|
2334 minValue = -2000 |
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tests of image decoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
18
diff
changeset
|
2335 maxValue = 4042 |
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Sebastien Jodogne <s.jodogne@gmail.com>
parents:
18
diff
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|
2336 |
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Sebastien Jodogne <s.jodogne@gmail.com>
parents:
18
diff
changeset
|
2337 truth = Image.open(GetDatabasePath('Formats/SignedCT.png')) |
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Sebastien Jodogne <s.jodogne@gmail.com>
parents:
18
diff
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|
2338 self.AssertSameImages(truth.getdata(), '/instances/%s/image-int16' % signed) |
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Sebastien Jodogne <s.jodogne@gmail.com>
parents:
18
diff
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|
2339 |
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Sebastien Jodogne <s.jodogne@gmail.com>
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18
diff
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|
2340 truth2 = map(lambda x: 0 if x >= 32768 else x, truth.getdata()) |
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Sebastien Jodogne <s.jodogne@gmail.com>
parents:
18
diff
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|
2341 self.AssertSameImages(truth2, '/instances/%s/image-uint16' % signed) |
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Sebastien Jodogne <s.jodogne@gmail.com>
parents:
18
diff
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|
2342 |
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Sebastien Jodogne <s.jodogne@gmail.com>
parents:
18
diff
changeset
|
2343 truth3 = map(lambda x: 255 if x >= 256 else x, truth2) |
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tests of image decoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
18
diff
changeset
|
2344 self.AssertSameImages(truth3, '/instances/%s/image-uint8' % signed) |
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Sebastien Jodogne <s.jodogne@gmail.com>
parents:
18
diff
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|
2345 |
2a29bcff60a7
tests of image decoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
18
diff
changeset
|
2346 tmp = map(lambda x: x - 65536 if x >= 32768 else x, truth.getdata()) |
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tests of image decoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
18
diff
changeset
|
2347 tmp = map(lambda x: (255.0 * (x - minValue)) / (maxValue - minValue), tmp) |
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tests of image decoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
18
diff
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|
2348 self.AssertSameImages(tmp, '/instances/%s/preview' % signed) |
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Sebastien Jodogne <s.jodogne@gmail.com>
parents:
18
diff
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|
2349 |
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Sebastien Jodogne <s.jodogne@gmail.com>
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18
diff
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|
2350 self.assertEqual('b57e6c872a3da50877c7da689b03a444', ComputeMD5(DoGet(_REMOTE, '/instances/%s/matlab' % signed))) |
22 | 2351 |
2352 | |
46
85b2e36ed392
explicit GoogleCode source
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
45
diff
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|
2353 def test_googlecode_issue_32(self): |
92
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parents:
89
diff
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|
2354 self.assertRaises(Exception, lambda: DoPut(_REMOTE, '/tools/default-encoding', 'nope')) |
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Sebastien Jodogne <s.jodogne@gmail.com>
parents:
89
diff
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|
2355 self.assertEqual('Windows1251', DoPut(_REMOTE, '/tools/default-encoding', 'Windows1251')) |
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test_findscu_encoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
89
diff
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|
2356 self.assertEqual('Windows1251', DoGet(_REMOTE, '/tools/default-encoding')) |
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Sebastien Jodogne <s.jodogne@gmail.com>
parents:
89
diff
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|
2357 |
22 | 2358 f = UploadInstance(_REMOTE, 'Issue32.dcm')['ID'] |
2359 tags = DoGet(_REMOTE, '/instances/%s/tags?simplify' % f) | |
2360 self.assertEqual(u'Рентгенография', tags['SeriesDescription']) | |
2361 self.assertEqual(u'Таз', tags['BodyPartExamined']) | |
2362 self.assertEqual(u'Прямая', tags['ViewPosition']) | |
2363 | |
92
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Sebastien Jodogne <s.jodogne@gmail.com>
parents:
89
diff
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|
2364 # Replay the same test using Latin1 as default encoding: This must fail |
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Sebastien Jodogne <s.jodogne@gmail.com>
parents:
89
diff
changeset
|
2365 self.assertEqual('Latin1', DoPut(_REMOTE, '/tools/default-encoding', 'Latin1')) |
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Sebastien Jodogne <s.jodogne@gmail.com>
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diff
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|
2366 |
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Sebastien Jodogne <s.jodogne@gmail.com>
parents:
89
diff
changeset
|
2367 DoDelete(_REMOTE, '/instances/%s' % f) |
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test_findscu_encoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
89
diff
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|
2368 f = UploadInstance(_REMOTE, 'Issue32.dcm')['ID'] |
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Sebastien Jodogne <s.jodogne@gmail.com>
parents:
89
diff
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|
2369 tags = DoGet(_REMOTE, '/instances/%s/tags?simplify' % f) |
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test_findscu_encoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
89
diff
changeset
|
2370 self.assertNotEqual(u'Рентгенография', tags['SeriesDescription']) |
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Sebastien Jodogne <s.jodogne@gmail.com>
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89
diff
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|
2371 |
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Sebastien Jodogne <s.jodogne@gmail.com>
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89
diff
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|
2372 |
22 | 2373 def test_encodings(self): |
23 | 2374 # Latin-1 (ISO_IR 100) |
22 | 2375 brainix = UploadInstance(_REMOTE, 'Brainix/Epi/IM-0001-0001.dcm')['ID'] |
2376 tags = DoGet(_REMOTE, '/instances/%s/tags?simplify' % brainix) | |
2377 self.assertEqual(u'IRM cérébrale, neuro-crâne', tags['StudyDescription']) | |
23 | 2378 |
2379 # Latin-2 (ISO_IR 101) | |
2380 a = UploadInstance(_REMOTE, 'MarekLatin2.dcm')['ID'] | |
2381 i = DoGet(_REMOTE, '/instances/%s/simplified-tags' % a) | |
2382 # dcm2xml MarekLatin2.dcm | iconv -f latin2 -t utf-8 | xmllint --format - | |
2383 self.assertEqual('Imię i Nazwisko osoby opisującej', | |
2384 i['ContentSequence'][4]['ConceptNameCodeSequence'][0]['CodeMeaning'].encode('utf-8')) | |
2385 | |
26
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test_storescu_custom_aet
Sebastien Jodogne <s.jodogne@gmail.com>
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diff
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|
2386 |
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test_storescu_custom_aet
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23
diff
changeset
|
2387 def test_storescu_custom_aet(self): |
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test_storescu_custom_aet
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diff
changeset
|
2388 # This tests a feature introduced in Orthanc 0.9.1: "Custom |
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test_storescu_custom_aet
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diff
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|
2389 # setting of the local AET during C-Store SCU (both in Lua and |
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test_storescu_custom_aet
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diff
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|
2390 # in the REST API)." |
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test_storescu_custom_aet
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diff
changeset
|
2391 # https://groups.google.com/forum/#!msg/orthanc-users/o5qMULformU/wZjW2iSaMcAJ |
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test_storescu_custom_aet
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diff
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|
2392 |
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test_storescu_custom_aet
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diff
changeset
|
2393 self.assertEqual(0, len(DoGet(_LOCAL, '/patients'))) |
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test_storescu_custom_aet
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diff
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|
2394 |
040f6ef1394a
test_storescu_custom_aet
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23
diff
changeset
|
2395 a = UploadInstance(_REMOTE, 'Knee/T1/IM-0001-0001.dcm') |
040f6ef1394a
test_storescu_custom_aet
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diff
changeset
|
2396 b = UploadInstance(_REMOTE, 'Knee/T1/IM-0001-0002.dcm') |
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test_storescu_custom_aet
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diff
changeset
|
2397 c = UploadInstance(_REMOTE, 'Knee/T1/IM-0001-0003.dcm') |
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test_storescu_custom_aet
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diff
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|
2398 |
040f6ef1394a
test_storescu_custom_aet
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23
diff
changeset
|
2399 j = DoPost(_REMOTE, '/modalities/orthanctest/store', { |
040f6ef1394a
test_storescu_custom_aet
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diff
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|
2400 'LocalAet' : 'YOP', |
040f6ef1394a
test_storescu_custom_aet
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23
diff
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|
2401 'Resources' : [ a['ID'], b['ID'] ] |
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test_storescu_custom_aet
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diff
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|
2402 }) |
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test_storescu_custom_aet
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diff
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|
2403 |
040f6ef1394a
test_storescu_custom_aet
Sebastien Jodogne <s.jodogne@gmail.com>
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diff
changeset
|
2404 self.assertEqual(2, len(DoGet(_LOCAL, '/instances'))) |
040f6ef1394a
test_storescu_custom_aet
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diff
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|
2405 self.assertEqual('YOP', DoGet(_LOCAL, '/instances/%s/metadata/RemoteAET' % a['ID'])) |
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test_storescu_custom_aet
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diff
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|
2406 |
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test_storescu_custom_aet
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diff
changeset
|
2407 DropOrthanc(_LOCAL) |
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test_storescu_custom_aet
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diff
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|
2408 self.assertEqual(0, len(DoGet(_LOCAL, '/instances'))) |
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test_storescu_custom_aet
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diff
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|
2409 |
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test_storescu_custom_aet
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diff
changeset
|
2410 j = DoPost(_REMOTE, '/modalities/orthanctest/store', { |
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test_storescu_custom_aet
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diff
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|
2411 'Resources' : [ c['ID'] ] |
040f6ef1394a
test_storescu_custom_aet
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diff
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|
2412 }) |
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test_storescu_custom_aet
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diff
changeset
|
2413 |
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2414 self.assertEqual(1, len(DoGet(_LOCAL, '/instances'))) |
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2415 self.assertEqual('ORTHANC', DoGet(_LOCAL, '/instances/%s/metadata/RemoteAET' % c['ID'])) |
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2416 |
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2417 DropOrthanc(_REMOTE) |
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test_storescu_custom_aet
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2418 DropOrthanc(_LOCAL) |
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2419 |
174 | 2420 InstallLuaScriptFromPath(_REMOTE, 'Lua/AutoroutingChangeAet.lua') |
26
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2421 DoPost(_REMOTE, '/tools/execute-script', 'aet = "HELLO"', 'application/lua') |
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2422 |
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2423 self.assertEqual(0, len(DoGet(_LOCAL, '/instances'))) |
040f6ef1394a
test_storescu_custom_aet
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2424 UploadInstance(_REMOTE, 'Knee/T1/IM-0001-0001.dcm') |
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test_storescu_custom_aet
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2425 WaitEmpty(_REMOTE) |
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test_storescu_custom_aet
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2426 self.assertEqual(1, len(DoGet(_LOCAL, '/instances'))) |
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test_storescu_custom_aet
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2427 self.assertEqual('HELLO', DoGet(_LOCAL, '/instances/%s/metadata/RemoteAET' % a['ID'])) |
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|
2428 |
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test_storescu_custom_aet
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2429 DoPost(_REMOTE, '/tools/execute-script', 'aet = nill', 'application/lua') |
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test_storescu_custom_aet
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2430 UploadInstance(_REMOTE, 'Knee/T1/IM-0001-0002.dcm') |
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test_storescu_custom_aet
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2431 WaitEmpty(_REMOTE) |
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test_storescu_custom_aet
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2432 self.assertEqual(2, len(DoGet(_LOCAL, '/instances'))) |
040f6ef1394a
test_storescu_custom_aet
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diff
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2433 self.assertEqual('ORTHANC', DoGet(_LOCAL, '/instances/%s/metadata/RemoteAET' % b['ID'])) |
34
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2434 |
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2435 def test_resources_since_limit(self): |
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2436 # Upload 16 instances |
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2437 for i in range(4): |
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2438 UploadInstance(_REMOTE, 'Brainix/Flair/IM-0001-000%d.dcm' % (i + 1)) |
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2439 UploadInstance(_REMOTE, 'Brainix/Epi/IM-0001-000%d.dcm' % (i + 1)) |
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2440 UploadInstance(_REMOTE, 'Knee/T1/IM-0001-000%d.dcm' % (i + 1)) |
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2441 UploadInstance(_REMOTE, 'Knee/T2/IM-0001-000%d.dcm' % (i + 1)) |
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2442 |
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2443 self.assertEqual(2, len(DoGet(_REMOTE, '/patients'))) |
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2444 self.assertEqual(2, len(DoGet(_REMOTE, '/studies'))) |
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2445 self.assertEqual(4, len(DoGet(_REMOTE, '/series'))) |
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2446 self.assertEqual(16, len(DoGet(_REMOTE, '/instances'))) |
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2447 |
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2448 self.assertRaises(Exception, lambda: DoGet(_REMOTE, '/patients&since=10' % i)) |
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2449 self.assertRaises(Exception, lambda: DoGet(_REMOTE, '/patients&limit=10' % i)) |
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2450 |
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2451 self.assertEqual(0, len(DoGet(_REMOTE, '/patients?since=0&limit=0'))) |
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2452 self.assertEqual(2, len(DoGet(_REMOTE, '/patients?since=0&limit=100'))) |
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2453 self.assertEqual(2, len(DoGet(_REMOTE, '/studies?since=0&limit=100'))) |
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2454 self.assertEqual(4, len(DoGet(_REMOTE, '/series?since=0&limit=100'))) |
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2455 self.assertEqual(16, len(DoGet(_REMOTE, '/instances?since=0&limit=100'))) |
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2456 self.assertEqual(1, len(DoGet(_REMOTE, '/patients?since=1&limit=100'))) |
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2457 self.assertEqual(0, len(DoGet(_REMOTE, '/patients?since=2&limit=100'))) |
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2458 self.assertEqual(0, len(DoGet(_REMOTE, '/patients?since=3&limit=100'))) |
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2459 self.assertEqual(1, len(DoGet(_REMOTE, '/studies?since=1&limit=100'))) |
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2460 self.assertEqual(3, len(DoGet(_REMOTE, '/series?since=1&limit=100'))) |
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2461 self.assertEqual(2, len(DoGet(_REMOTE, '/series?since=2&limit=100'))) |
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2462 self.assertEqual(1, len(DoGet(_REMOTE, '/series?since=3&limit=100'))) |
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2463 self.assertEqual(0, len(DoGet(_REMOTE, '/series?since=4&limit=100'))) |
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diff
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2464 self.assertEqual(0, len(DoGet(_REMOTE, '/series?since=100&limit=100'))) |
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2465 self.assertEqual(15, len(DoGet(_REMOTE, '/instances?since=1&limit=100'))) |
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|
2466 |
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diff
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|
2467 for limit in [ 1, 2, 3, 7, 16, 17 ]: |
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2468 s = {} |
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|
2469 since = 0 |
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|
2470 while True: |
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diff
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|
2471 t = DoGet(_REMOTE, '/instances?since=%d&limit=%d' % (since, limit)) |
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|
2472 if len(t) == 0: |
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diff
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|
2473 break |
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diff
changeset
|
2474 |
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diff
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|
2475 since += len(t) |
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diff
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|
2476 for i in t: |
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|
2477 s[i] = None |
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diff
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|
2478 |
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diff
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|
2479 self.assertEqual(16, len(s)) |
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|
2480 for instance in DoGet(_REMOTE, '/instances'): |
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|
2481 self.assertTrue(instance in s) |
36 | 2482 |
2483 | |
2484 def test_create_pdf(self): | |
2485 # Upload 4 instances | |
2486 brainixInstance = UploadInstance(_REMOTE, 'Brainix/Flair/IM-0001-0001.dcm')['ID'] | |
2487 UploadInstance(_REMOTE, 'Brainix/Epi/IM-0001-0001.dcm') | |
2488 UploadInstance(_REMOTE, 'Knee/T1/IM-0001-0001.dcm') | |
2489 UploadInstance(_REMOTE, 'Knee/T2/IM-0001-0001.dcm') | |
2490 | |
2491 brainixPatient = '16738bc3-e47ed42a-43ce044c-a3414a45-cb069bd0' | |
2492 brainixStudy = '27f7126f-4f66fb14-03f4081b-f9341db2-53925988' | |
2493 brainixEpi = '2ac1316d-3e432022-62eabff2-c59f5475-9b1ac3f8' | |
2494 | |
2495 with open(GetDatabasePath('HelloWorld.pdf'), 'rb') as f: | |
2496 pdf = f.read() | |
2497 | |
2498 i = DoPost(_REMOTE, '/tools/create-dicom', | |
2499 json.dumps({ | |
2500 'Tags' : { | |
2501 'PatientName' : 'Jodogne', | |
2502 'Modality' : 'CT', | |
2503 }, | |
2504 'Content' : 'data:application/pdf;base64,' + base64.b64encode(pdf) | |
2505 })) | |
2506 | |
2507 self.assertEqual('Jodogne', DoGet(_REMOTE, '/instances/%s/content/PatientName' % i['ID']).strip()) | |
2508 self.assertEqual('OT', DoGet(_REMOTE, '/instances/%s/content/Modality' % i['ID']).strip()) | |
2509 | |
2510 b = DoGet(_REMOTE, '/instances/%s/content/0042-0011' % i['ID']) | |
2511 self.assertEqual(len(b), len(pdf) + 1) | |
2512 self.assertEqual(ComputeMD5(b), ComputeMD5(pdf + '\0')) | |
2513 | |
2514 self.assertRaises(Exception, lambda: DoPost(_REMOTE, '/tools/create-dicom', | |
2515 json.dumps({ | |
2516 'Parent' : brainixPatient, | |
2517 'Tags' : { | |
2518 'PatientName' : 'Jodogne', | |
2519 } | |
2520 }))) | |
2521 | |
2522 i = DoPost(_REMOTE, '/tools/create-dicom', | |
2523 json.dumps({ | |
2524 'Parent' : brainixPatient, | |
2525 'Tags' : { 'StudyDescription' : 'PDF^Patient' }, | |
2526 'Content' : 'data:application/pdf;base64,' + base64.b64encode(pdf) | |
2527 })) | |
2528 | |
2529 self.assertEqual(brainixPatient, DoGet(_REMOTE, '/instances/%s/patient' % i['ID'])['ID']) | |
2530 | |
2531 i = DoPost(_REMOTE, '/tools/create-dicom', | |
2532 json.dumps({ | |
2533 'Parent' : brainixStudy, | |
2534 'Tags' : { 'SeriesDescription' : 'PDF^Study' }, | |
2535 'Content' : 'data:application/pdf;base64,' + base64.b64encode(pdf) | |
2536 })) | |
2537 | |
2538 self.assertEqual(brainixStudy, DoGet(_REMOTE, '/instances/%s/study' % i['ID'])['ID']) | |
2539 | |
2540 i = DoPost(_REMOTE, '/tools/create-dicom', | |
2541 json.dumps({ | |
2542 'Parent' : brainixEpi, | |
37 | 2543 'Tags' : { 'SpecificCharacterSet' : 'ISO_IR 13' }, |
36 | 2544 'Content' : 'data:application/pdf;base64,' + base64.b64encode(pdf) |
2545 })) | |
2546 | |
2547 self.assertEqual(brainixEpi, DoGet(_REMOTE, '/instances/%s/series' % i['ID'])['ID']) | |
2548 | |
2549 b = DoGet(_REMOTE, '/instances/%s/pdf' % i['ID']) | |
2550 self.assertEqual(len(b), len(pdf)) | |
2551 self.assertEqual(ComputeMD5(b), ComputeMD5(pdf)) | |
2552 | |
2553 self.assertRaises(Exception, lambda: DoGet(_REMOTE, '/instances/%s/pdf' % brainixInstance)) | |
38 | 2554 |
2555 | |
2556 def test_create_series(self): | |
2557 i = DoPost(_REMOTE, '/tools/create-dicom', | |
2558 json.dumps({ | |
2559 'Tags' : { | |
40 | 2560 'SpecificCharacterSet' : 'ISO_IR 100', |
2561 'PatientName' : 'Sébastien Jodogne', | |
38 | 2562 'Modality' : 'CT', |
2563 }, | |
2564 'Content' : [ | |
40 | 2565 { |
2566 'Content': 'data:image/png;base64,iVBORw0KGgoAAAANSUhEUgAAAAUAAAAFCAYAAACNbyblAAAAHElEQVQI12P4//8/w38GIAXDIBKE0DHxgljNBAAO9TXL0Y4OHwAAAABJRU5ErkJggg==', # red dot in RGBA | |
2567 'Tags' : { 'ImageComments' : 'Tutu' } | |
2568 }, | |
38 | 2569 'data:image/png;base64,iVBORw0KGgoAAAANSUhEUgAAABAAAAAQCAYAAAAf8/9hAAAAoUlEQVQ4jZ2SWw3EIBREjwUsYAELa2EtoAULFUCyXAtroRZqoRbox254BdLC/DZnZjoXWJFgCDg8egW2CBEhEnDzyRk+Ecxz2KP/0AL8S99T+jQccAVs22qKwAuPuq0uyNg9cPLh3am+pe/dkHLZtqJHj6vXJrZ7nvzvxxgemXgUwnGfXqpee09mUwp8m022OYP6bLF7mVuVe0y/umxinsAXRd9z0k1ubWsAAAAASUVORK5CYII=', |
2570 ] | |
2571 })) | |
2572 | |
2573 s = DoGet(_REMOTE, i['Path']) | |
2574 self.assertEqual('Series', s['Type']) | |
2575 self.assertEqual(s['ID'], i['ID']) | |
2576 self.assertEqual(2, len(s['Instances'])) | |
39 | 2577 self.assertEqual(2, s['ExpectedNumberOfInstances']) |
2578 self.assertEqual('Complete', s['Status']) | |
40 | 2579 |
2580 a = DoGet(_REMOTE, '/instances/%s/tags?simplify' % s['Instances'][0]) | |
2581 b = DoGet(_REMOTE, '/instances/%s/tags?simplify' % s['Instances'][1]) | |
2582 self.assertTrue('ImageComments' in a or 'ImageComments' in b) | |
2583 if 'ImageComments' in a: | |
2584 self.assertEqual('Tutu', a['ImageComments']) | |
2585 else: | |
2586 self.assertEqual('Tutu', b['ImageComments']) | |
2587 | |
2588 patient = DoGet(_REMOTE, '/instances/%s/patient' % s['Instances'][0]) | |
2589 self.assertEqual(patient['MainDicomTags']['PatientName'].encode('utf-8'), | |
2590 'Sébastien Jodogne') | |
47 | 2591 |
2592 | |
2593 def test_create_binary(self): | |
2594 binary = ''.join(map(chr, range(256))) | |
2595 encoded = 'data:application/octet-stream;base64,' + base64.b64encode(binary) | |
2596 tags = { | |
2597 'PatientName' : 'Jodogne', | |
2598 '8899-8899' : encoded | |
2599 } | |
2600 | |
2601 i = DoPost(_REMOTE, '/tools/create-dicom', | |
2602 json.dumps({ | |
266 | 2603 'Tags' : tags, |
2604 'PrivateCreator' : 'TestBinary', | |
47 | 2605 })) |
2606 | |
2607 self.assertEqual('Jodogne', DoGet(_REMOTE, '/instances/%s/content/PatientName' % i['ID']).strip()) | |
2608 self.assertEqual(binary, DoGet(_REMOTE, '/instances/%s/content/8899-8899' % i['ID']).strip()) | |
2609 | |
2610 i = DoPost(_REMOTE, '/tools/create-dicom', | |
2611 json.dumps({ | |
2612 'InterpretBinaryTags' : False, | |
266 | 2613 'Tags' : tags, |
2614 'PrivateCreator' : 'TestBinary', | |
47 | 2615 })) |
2616 | |
2617 self.assertEqual('Jodogne', DoGet(_REMOTE, '/instances/%s/content/PatientName' % i['ID']).strip()) | |
2618 self.assertEqual(encoded, DoGet(_REMOTE, '/instances/%s/content/8899-8899' % i['ID'])[0:-1]) | |
48
e4352463ff74
test_patient_ids_collision
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
47
diff
changeset
|
2619 |
e4352463ff74
test_patient_ids_collision
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
47
diff
changeset
|
2620 |
e4352463ff74
test_patient_ids_collision
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
47
diff
changeset
|
2621 def test_patient_ids_collision(self): |
e4352463ff74
test_patient_ids_collision
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
47
diff
changeset
|
2622 # Upload 3 instances from 3 different studies, but with the |
e4352463ff74
test_patient_ids_collision
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
47
diff
changeset
|
2623 # same PatientID |
e4352463ff74
test_patient_ids_collision
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
47
diff
changeset
|
2624 for i in range(3): |
e4352463ff74
test_patient_ids_collision
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
47
diff
changeset
|
2625 UploadInstance(_REMOTE, 'PatientIdsCollision/Image%d.dcm' % (i + 1)) |
e4352463ff74
test_patient_ids_collision
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
47
diff
changeset
|
2626 |
e4352463ff74
test_patient_ids_collision
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
47
diff
changeset
|
2627 a = DoPost(_REMOTE, '/tools/find', { 'Level' : 'Patient', |
e4352463ff74
test_patient_ids_collision
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
47
diff
changeset
|
2628 'Query' : { 'PatientName' : '*' }}) |
e4352463ff74
test_patient_ids_collision
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
47
diff
changeset
|
2629 self.assertEqual(1, len(a)) |
e4352463ff74
test_patient_ids_collision
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
47
diff
changeset
|
2630 self.assertEqual('COMMON', DoGet(_REMOTE, '/patients/%s' % a[0]) ['MainDicomTags']['PatientID']) |
e4352463ff74
test_patient_ids_collision
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
47
diff
changeset
|
2631 |
e4352463ff74
test_patient_ids_collision
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
47
diff
changeset
|
2632 a = DoPost(_REMOTE, '/tools/find', { 'Level' : 'Study', |
e4352463ff74
test_patient_ids_collision
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
47
diff
changeset
|
2633 'CaseSensitive' : True, |
e4352463ff74
test_patient_ids_collision
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
47
diff
changeset
|
2634 'Query' : { 'PatientName' : 'FOO\\HELLO' }}) |
e4352463ff74
test_patient_ids_collision
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
47
diff
changeset
|
2635 self.assertEqual(2, len(a)) |
e4352463ff74
test_patient_ids_collision
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
47
diff
changeset
|
2636 |
e4352463ff74
test_patient_ids_collision
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
47
diff
changeset
|
2637 a = DoPost(_REMOTE, '/tools/find', { 'Level' : 'Series', |
e4352463ff74
test_patient_ids_collision
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
47
diff
changeset
|
2638 'CaseSensitive' : False, |
e4352463ff74
test_patient_ids_collision
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
47
diff
changeset
|
2639 'Query' : { 'PatientName' : 'Foo' }}) |
e4352463ff74
test_patient_ids_collision
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
47
diff
changeset
|
2640 self.assertEqual(1, len(a)) |
e4352463ff74
test_patient_ids_collision
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
47
diff
changeset
|
2641 self.assertEqual('FOO^SERIES', DoGet(_REMOTE, '/series/%s/study' % a[0]) ['MainDicomTags']['StudyDescription']) |
e4352463ff74
test_patient_ids_collision
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
47
diff
changeset
|
2642 self.assertEqual('FOO', DoGet(_REMOTE, '/series/%s/study' % a[0]) ['PatientMainDicomTags']['PatientName']) |
e4352463ff74
test_patient_ids_collision
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
47
diff
changeset
|
2643 self.assertEqual('COMMON', DoGet(_REMOTE, '/series/%s/study' % a[0]) ['PatientMainDicomTags']['PatientID']) |
e4352463ff74
test_patient_ids_collision
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
47
diff
changeset
|
2644 |
e4352463ff74
test_patient_ids_collision
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
47
diff
changeset
|
2645 a = DoPost(_REMOTE, '/tools/find', { 'Level' : 'Study', |
e4352463ff74
test_patient_ids_collision
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
47
diff
changeset
|
2646 'Query' : { 'PatientName' : '*' }}) |
e4352463ff74
test_patient_ids_collision
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
47
diff
changeset
|
2647 self.assertEqual(3, len(a)) |
e4352463ff74
test_patient_ids_collision
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
47
diff
changeset
|
2648 d = map(lambda x: DoGet(_REMOTE, '/studies/%s' % x) ['MainDicomTags']['StudyDescription'], a) |
e4352463ff74
test_patient_ids_collision
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
47
diff
changeset
|
2649 self.assertTrue('FOO^SERIES' in d) |
e4352463ff74
test_patient_ids_collision
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
47
diff
changeset
|
2650 self.assertTrue('HELLO^SERIES' in d) |
e4352463ff74
test_patient_ids_collision
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
47
diff
changeset
|
2651 self.assertTrue('WORLD^SERIES' in d) |
e4352463ff74
test_patient_ids_collision
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
47
diff
changeset
|
2652 |
e4352463ff74
test_patient_ids_collision
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
47
diff
changeset
|
2653 d = map(lambda x: DoGet(_REMOTE, '/studies/%s' % x) ['PatientMainDicomTags']['PatientID'], a) |
e4352463ff74
test_patient_ids_collision
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
47
diff
changeset
|
2654 self.assertEqual(1, len(set(d))) |
e4352463ff74
test_patient_ids_collision
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
47
diff
changeset
|
2655 self.assertEqual('COMMON', d[0]) |
e4352463ff74
test_patient_ids_collision
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
47
diff
changeset
|
2656 |
e4352463ff74
test_patient_ids_collision
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
47
diff
changeset
|
2657 for i in a: |
e4352463ff74
test_patient_ids_collision
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
47
diff
changeset
|
2658 d = DoGet(_REMOTE, '/studies/%s' % i) ['MainDicomTags']['StudyDescription'] |
e4352463ff74
test_patient_ids_collision
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
47
diff
changeset
|
2659 p = DoGet(_REMOTE, '/studies/%s' % i) ['PatientMainDicomTags']['PatientName'] |
e4352463ff74
test_patient_ids_collision
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
47
diff
changeset
|
2660 self.assertEqual('%s^SERIES' % p, d) |
49
e7f9b8199545
test_bitbucket_issue_4
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
48
diff
changeset
|
2661 |
e7f9b8199545
test_bitbucket_issue_4
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
48
diff
changeset
|
2662 |
e7f9b8199545
test_bitbucket_issue_4
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
48
diff
changeset
|
2663 def test_bitbucket_issue_4(self): |
e7f9b8199545
test_bitbucket_issue_4
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
48
diff
changeset
|
2664 UploadInstance(_REMOTE, 'Brainix/Epi/IM-0001-0001.dcm') |
e7f9b8199545
test_bitbucket_issue_4
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
48
diff
changeset
|
2665 UploadInstance(_REMOTE, 'Brainix/Epi/IM-0001-0002.dcm') |
e7f9b8199545
test_bitbucket_issue_4
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
48
diff
changeset
|
2666 UploadInstance(_REMOTE, 'Brainix/Epi/IM-0001-0003.dcm') |
e7f9b8199545
test_bitbucket_issue_4
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
48
diff
changeset
|
2667 UploadInstance(_REMOTE, 'Formats/Jpeg.dcm') |
e7f9b8199545
test_bitbucket_issue_4
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
48
diff
changeset
|
2668 UploadInstance(_REMOTE, 'Formats/JpegLossless.dcm') |
e7f9b8199545
test_bitbucket_issue_4
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
48
diff
changeset
|
2669 UploadInstance(_REMOTE, 'Formats/Rle.dcm') |
e7f9b8199545
test_bitbucket_issue_4
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
48
diff
changeset
|
2670 |
e7f9b8199545
test_bitbucket_issue_4
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
48
diff
changeset
|
2671 self.assertEqual(0, len(DoGet(_LOCAL, '/instances'))) |
e7f9b8199545
test_bitbucket_issue_4
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
48
diff
changeset
|
2672 self.assertEqual(6, len(DoGet(_REMOTE, '/instances'))) |
e7f9b8199545
test_bitbucket_issue_4
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
48
diff
changeset
|
2673 |
e7f9b8199545
test_bitbucket_issue_4
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
48
diff
changeset
|
2674 p = DoGet(_REMOTE, '/patients') |
e7f9b8199545
test_bitbucket_issue_4
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
48
diff
changeset
|
2675 self.assertEqual(2, len(p)) |
e7f9b8199545
test_bitbucket_issue_4
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
48
diff
changeset
|
2676 i1 = map(lambda x: x['ID'], DoGet(_REMOTE, '/patients/%s/instances' % p[0])) |
e7f9b8199545
test_bitbucket_issue_4
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
48
diff
changeset
|
2677 i2 = map(lambda x: x['ID'], DoGet(_REMOTE, '/patients/%s/instances' % p[1])) |
e7f9b8199545
test_bitbucket_issue_4
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
48
diff
changeset
|
2678 self.assertEqual(3, len(i1)) |
e7f9b8199545
test_bitbucket_issue_4
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
48
diff
changeset
|
2679 self.assertEqual(3, len(i2)) |
e7f9b8199545
test_bitbucket_issue_4
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
48
diff
changeset
|
2680 |
e7f9b8199545
test_bitbucket_issue_4
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
48
diff
changeset
|
2681 j = DoPost(_REMOTE, '/modalities/orthanctest/store', i2[0:1] + i1 + i2[1:3]) |
e7f9b8199545
test_bitbucket_issue_4
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
48
diff
changeset
|
2682 |
e7f9b8199545
test_bitbucket_issue_4
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
48
diff
changeset
|
2683 self.assertEqual(6, len(DoGet(_LOCAL, '/instances'))) |
50
8de63d56cf11
test_create_sequence
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
49
diff
changeset
|
2684 |
8de63d56cf11
test_create_sequence
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
49
diff
changeset
|
2685 |
8de63d56cf11
test_create_sequence
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
49
diff
changeset
|
2686 def test_create_sequence(self): |
8de63d56cf11
test_create_sequence
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
49
diff
changeset
|
2687 i = DoPost(_REMOTE, '/tools/create-dicom', |
8de63d56cf11
test_create_sequence
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
49
diff
changeset
|
2688 json.dumps({ |
8de63d56cf11
test_create_sequence
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
49
diff
changeset
|
2689 'Tags' : { |
8de63d56cf11
test_create_sequence
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
49
diff
changeset
|
2690 'SpecificCharacterSet': 'ISO_IR 100', # Encode using Latin1 |
8de63d56cf11
test_create_sequence
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
49
diff
changeset
|
2691 'PatientName': 'Jodogne^', |
51
264a20a0276d
test_modify_sequence
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
50
diff
changeset
|
2692 'ReferencedStudySequence': GenerateTestSequence(), |
50
8de63d56cf11
test_create_sequence
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
49
diff
changeset
|
2693 } |
8de63d56cf11
test_create_sequence
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
49
diff
changeset
|
2694 }))['ID'] |
8de63d56cf11
test_create_sequence
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
49
diff
changeset
|
2695 |
8de63d56cf11
test_create_sequence
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
49
diff
changeset
|
2696 self.assertEqual('Jodogne^', DoGet(_REMOTE, '/instances/%s/content/PatientName' % i)) |
8de63d56cf11
test_create_sequence
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
49
diff
changeset
|
2697 self.assertEqual('Hello^', DoGet(_REMOTE, '/instances/%s/content/ReferencedStudySequence/0/StudyDescription' % i)) |
8de63d56cf11
test_create_sequence
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
49
diff
changeset
|
2698 self.assertEqual('Toto', DoGet(_REMOTE, '/instances/%s/content/ReferencedStudySequence/0/ReferencedStudySequence/0/StudyDescription' % i)) |
8de63d56cf11
test_create_sequence
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
49
diff
changeset
|
2699 self.assertEqual('Tata', DoGet(_REMOTE, '/instances/%s/content/ReferencedStudySequence/0/ReferencedStudySequence/1/StudyDescription' % i)) |
8de63d56cf11
test_create_sequence
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
49
diff
changeset
|
2700 self.assertEqual(u'Sébastien^'.encode('latin-1'), |
8de63d56cf11
test_create_sequence
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
49
diff
changeset
|
2701 DoGet(_REMOTE, '/instances/%s/content/ReferencedStudySequence/1/StudyDescription' % i)) |
51
264a20a0276d
test_modify_sequence
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
50
diff
changeset
|
2702 |
264a20a0276d
test_modify_sequence
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
50
diff
changeset
|
2703 |
264a20a0276d
test_modify_sequence
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
50
diff
changeset
|
2704 def test_modify_sequence(self): |
264a20a0276d
test_modify_sequence
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
50
diff
changeset
|
2705 i = UploadInstance(_REMOTE, 'PrivateTags.dcm')['ID'] |
264a20a0276d
test_modify_sequence
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
50
diff
changeset
|
2706 self.assertRaises(Exception, lambda: DoGet(_REMOTE, '/instances/%s/content/ReferencedStudySequence' % i)) |
264a20a0276d
test_modify_sequence
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
50
diff
changeset
|
2707 |
264a20a0276d
test_modify_sequence
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
50
diff
changeset
|
2708 j = DoPost(_REMOTE, '/instances/%s/modify' % i, |
264a20a0276d
test_modify_sequence
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
50
diff
changeset
|
2709 json.dumps({ |
264a20a0276d
test_modify_sequence
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
50
diff
changeset
|
2710 "Replace" : { |
264a20a0276d
test_modify_sequence
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
50
diff
changeset
|
2711 "PatientName" : "hello", |
264a20a0276d
test_modify_sequence
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
50
diff
changeset
|
2712 'ReferencedStudySequence': GenerateTestSequence(), |
264a20a0276d
test_modify_sequence
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
50
diff
changeset
|
2713 }, |
264a20a0276d
test_modify_sequence
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
50
diff
changeset
|
2714 }), |
264a20a0276d
test_modify_sequence
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
50
diff
changeset
|
2715 'application/json') |
264a20a0276d
test_modify_sequence
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
50
diff
changeset
|
2716 j = DoPost(_REMOTE, '/instances', j, 'application/dicom')['ID'] |
264a20a0276d
test_modify_sequence
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
50
diff
changeset
|
2717 DoDelete(_REMOTE, '/instances/%s' % i) |
264a20a0276d
test_modify_sequence
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
50
diff
changeset
|
2718 |
52 | 2719 self.assertEqual(2, len(DoGet(_REMOTE, '/instances/%s/content/ReferencedStudySequence' % j))) |
2720 | |
2721 | |
2722 def test_compression(self): | |
2723 i = UploadInstance(_REMOTE, 'DummyCT.dcm')['ID'] | |
2724 | |
2725 data = DoGetRaw(_REMOTE, '/instances/%s/attachments/dicom-as-json/data' % i)[1] | |
2726 | |
2727 # "StorageCompression" is enabled in the Orthanc to be tested, | |
2728 # uncompress the data before running the test | |
2729 if DoGet(_REMOTE, '/instances/%s/attachments/dicom-as-json/is-compressed' % i) != 0: | |
2730 DoPost(_REMOTE, '/instances/%s/attachments/dicom-as-json/uncompress' % i) | |
2731 | |
2732 cs = DoGet(_REMOTE, '/statistics')['TotalDiskSize'] | |
2733 us = DoGet(_REMOTE, '/statistics')['TotalUncompressedSize'] | |
2734 size = DoGet(_REMOTE, '/instances/%s/attachments/dicom-as-json/size' % i) | |
2735 md5 = DoGet(_REMOTE, '/instances/%s/attachments/dicom-as-json/md5' % i) | |
2736 self.assertEqual(data, DoGetRaw(_REMOTE, '/instances/%s/attachments/dicom-as-json/compressed-data' % i)[1]) | |
2737 self.assertEqual(md5, DoGet(_REMOTE, '/instances/%s/attachments/dicom-as-json/compressed-md5' % i)) | |
2738 self.assertEqual(size, DoGet(_REMOTE, '/instances/%s/attachments/dicom-as-json/compressed-size' % i)) | |
2739 | |
2740 ops = DoGet(_REMOTE, '/instances/%s/attachments/dicom-as-json' % i) | |
2741 self.assertTrue('compress' in ops) | |
2742 self.assertTrue('uncompress' in ops) | |
2743 self.assertTrue('is-compressed' in ops) | |
2744 self.assertEqual(0, DoGet(_REMOTE, '/instances/%s/attachments/dicom-as-json/is-compressed' % i)) | |
2745 DoPost(_REMOTE, '/instances/%s/attachments/dicom-as-json/verify-md5' % i) | |
2746 | |
2747 DoPost(_REMOTE, '/instances/%s/attachments/dicom-as-json/compress' % i) | |
2748 DoPost(_REMOTE, '/instances/%s/attachments/dicom-as-json/verify-md5' % i) | |
2749 self.assertEqual(1, DoGet(_REMOTE, '/instances/%s/attachments/dicom-as-json/is-compressed' % i)) | |
2750 self.assertLess(cs, DoGet(_REMOTE, '/statistics')['TotalDiskSize']) | |
2751 self.assertEqual(us, DoGet(_REMOTE, '/statistics')['TotalUncompressedSize']) | |
2752 self.assertGreater(len(data), len(DoGetRaw(_REMOTE, '/instances/%s/attachments/dicom-as-json/compressed-data' % i)[1])) | |
2753 self.assertGreater(size, DoGet(_REMOTE, '/instances/%s/attachments/dicom-as-json/compressed-size' % i)) | |
2754 self.assertEqual(size, DoGet(_REMOTE, '/instances/%s/attachments/dicom-as-json/size' % i)) | |
2755 self.assertEqual(md5, DoGet(_REMOTE, '/instances/%s/attachments/dicom-as-json/md5' % i)) | |
2756 self.assertNotEqual(md5, DoGet(_REMOTE, '/instances/%s/attachments/dicom-as-json/compressed-md5' % i)) | |
2757 | |
2758 DoPost(_REMOTE, '/instances/%s/attachments/dicom-as-json/uncompress' % i) | |
2759 DoPost(_REMOTE, '/instances/%s/attachments/dicom-as-json/verify-md5' % i) | |
2760 self.assertEqual(0, DoGet(_REMOTE, '/instances/%s/attachments/dicom-as-json/is-compressed' % i)) | |
2761 self.assertEqual(data, DoGetRaw(_REMOTE, '/instances/%s/attachments/dicom-as-json/compressed-data' % i)[1]) | |
2762 self.assertEqual(size, DoGet(_REMOTE, '/instances/%s/attachments/dicom-as-json/compressed-size' % i)) | |
2763 self.assertEqual(size, DoGet(_REMOTE, '/instances/%s/attachments/dicom-as-json/size' % i)) | |
2764 self.assertEqual(md5, DoGet(_REMOTE, '/instances/%s/attachments/dicom-as-json/md5' % i)) | |
2765 self.assertEqual(md5, DoGet(_REMOTE, '/instances/%s/attachments/dicom-as-json/compressed-md5' % i)) | |
2766 self.assertEqual(cs, DoGet(_REMOTE, '/statistics')['TotalDiskSize']) | |
2767 self.assertEqual(us, DoGet(_REMOTE, '/statistics')['TotalUncompressedSize']) | |
53 | 2768 |
2769 | |
2770 def test_ordered_slices(self): | |
2771 i = UploadInstance(_REMOTE, 'Multiframe.dcm')['ID'] | |
2772 s = DoGet(_REMOTE, '/instances/%s' % i)['ParentSeries'] | |
2773 o = DoGet(_REMOTE, '/series/%s/ordered-slices' % s) | |
2774 self.assertEqual('Sequence', o['Type']) | |
2775 self.assertEqual(1, len(o['Dicom'])) | |
2776 self.assertEqual('/instances/9e05eb0a-18b6268c-e0d36085-8ddab517-3b5aec02/file', o['Dicom'][0]) | |
2777 self.assertEqual(76, len(o['Slices'])) | |
2778 for j in range(76): | |
2779 self.assertEqual('/instances/9e05eb0a-18b6268c-e0d36085-8ddab517-3b5aec02/frames/%d' % j, o['Slices'][j]) | |
2780 | |
68 | 2781 self.assertEqual(1, len(o['SlicesShort'])) |
2782 self.assertEqual('9e05eb0a-18b6268c-e0d36085-8ddab517-3b5aec02', o['SlicesShort'][0][0]) | |
2783 self.assertEqual(0, o['SlicesShort'][0][1]) | |
2784 self.assertEqual(76, o['SlicesShort'][0][2]) | |
2785 | |
53 | 2786 i = UploadInstance(_REMOTE, 'Brainix/Epi/IM-0001-0001.dcm')['ID'] |
2787 j = UploadInstance(_REMOTE, 'Brainix/Epi/IM-0001-0002.dcm')['ID'] | |
2788 k = UploadInstance(_REMOTE, 'Brainix/Epi/IM-0001-0003.dcm')['ID'] | |
2789 s = DoGet(_REMOTE, '/instances/%s' % i)['ParentSeries'] | |
2790 o = DoGet(_REMOTE, '/series/%s/ordered-slices' % s) | |
2791 | |
2792 self.assertEqual('Volume', o['Type']) | |
2793 self.assertEqual(3, len(o['Dicom'])) | |
2794 self.assertEqual(3, len(o['Slices'])) | |
2795 self.assertEqual('/instances/%s/file' % i, o['Dicom'][2]) | |
2796 self.assertEqual('/instances/%s/file' % j, o['Dicom'][1]) | |
2797 self.assertEqual('/instances/%s/file' % k, o['Dicom'][0]) | |
2798 self.assertEqual('/instances/%s/frames/0' % i, o['Slices'][2]) | |
2799 self.assertEqual('/instances/%s/frames/0' % j, o['Slices'][1]) | |
2800 self.assertEqual('/instances/%s/frames/0' % k, o['Slices'][0]) | |
2801 | |
68 | 2802 self.assertEqual(3, len(o['SlicesShort'])) |
2803 self.assertEqual(k, o['SlicesShort'][0][0]) | |
2804 self.assertEqual(0, o['SlicesShort'][0][1]) | |
2805 self.assertEqual(1, o['SlicesShort'][0][2]) | |
2806 self.assertEqual(j, o['SlicesShort'][1][0]) | |
2807 self.assertEqual(0, o['SlicesShort'][1][1]) | |
2808 self.assertEqual(1, o['SlicesShort'][1][2]) | |
2809 self.assertEqual(i, o['SlicesShort'][2][0]) | |
2810 self.assertEqual(0, o['SlicesShort'][2][1]) | |
2811 self.assertEqual(1, o['SlicesShort'][2][2]) | |
2812 | |
53 | 2813 i = UploadInstance(_REMOTE, 'Beaufix/IM-0001-0001.dcm')['ID'] |
2814 j = UploadInstance(_REMOTE, 'Beaufix/IM-0001-0002.dcm')['ID'] | |
2815 s = DoGet(_REMOTE, '/instances/%s' % i)['ParentSeries'] | |
2816 o = DoGet(_REMOTE, '/series/%s/ordered-slices' % s) | |
2817 | |
2818 self.assertEqual('Sequence', o['Type']) | |
2819 self.assertEqual(2, len(o['Dicom'])) | |
2820 self.assertEqual(2, len(o['Slices'])) | |
2821 self.assertEqual('/instances/%s/file' % i, o['Dicom'][0]) | |
2822 self.assertEqual('/instances/%s/file' % j, o['Dicom'][1]) | |
2823 self.assertEqual('/instances/%s/frames/0' % i, o['Slices'][0]) | |
2824 self.assertEqual('/instances/%s/frames/0' % j, o['Slices'][1]) | |
54
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parents:
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diff
changeset
|
2825 |
68 | 2826 self.assertEqual(2, len(o['SlicesShort'])) |
2827 self.assertEqual(i, o['SlicesShort'][0][0]) | |
2828 self.assertEqual(0, o['SlicesShort'][0][1]) | |
2829 self.assertEqual(1, o['SlicesShort'][0][2]) | |
2830 self.assertEqual(j, o['SlicesShort'][1][0]) | |
2831 self.assertEqual(0, o['SlicesShort'][1][1]) | |
2832 self.assertEqual(1, o['SlicesShort'][1][2]) | |
2833 | |
2834 | |
54
c5f8a6b0d85e
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diff
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|
2835 |
c5f8a6b0d85e
test_incoming_movescu_accession
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53
diff
changeset
|
2836 def test_incoming_movescu_accession(self): |
c5f8a6b0d85e
test_incoming_movescu_accession
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diff
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|
2837 UploadInstance(_REMOTE, 'Knee/T1/IM-0001-0001.dcm') |
c5f8a6b0d85e
test_incoming_movescu_accession
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2838 |
137
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diff
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|
2839 # No matching patient, so no job is created |
54
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test_incoming_movescu_accession
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
changeset
|
2840 self.assertEqual(0, len(DoGet(_LOCAL, '/patients'))) |
c5f8a6b0d85e
test_incoming_movescu_accession
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53
diff
changeset
|
2841 CallMoveScu([ '--study', '-k', '0008,0052=STUDY', '-k', 'AccessionNumber=nope' ]) |
c5f8a6b0d85e
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parents:
53
diff
changeset
|
2842 self.assertEqual(0, len(DoGet(_LOCAL, '/patients'))) |
c5f8a6b0d85e
test_incoming_movescu_accession
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parents:
53
diff
changeset
|
2843 CallMoveScu([ '--study', '-k', '0008,0052=PATIENT', '-k', 'AccessionNumber=A10003245599' ]) |
c5f8a6b0d85e
test_incoming_movescu_accession
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parents:
53
diff
changeset
|
2844 self.assertEqual(0, len(DoGet(_LOCAL, '/patients'))) |
137
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diff
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|
2845 |
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diff
changeset
|
2846 # 1 Matching patient, track the job |
138 | 2847 self.assertTrue(MonitorJob(_REMOTE, lambda: CallMoveScu([ |
2848 '--study', | |
2849 '-k', '0008,0052=STUDY', | |
2850 '-k', 'AccessionNumber=A10003245599' | |
2851 ]))) | |
137
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changeset
|
2852 |
54
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test_incoming_movescu_accession
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parents:
53
diff
changeset
|
2853 self.assertEqual(1, len(DoGet(_LOCAL, '/patients'))) |
c5f8a6b0d85e
test_incoming_movescu_accession
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diff
changeset
|
2854 |
55 | 2855 |
2856 def test_dicom_to_json(self): | |
2857 i = UploadInstance(_REMOTE, 'PrivateMDNTags.dcm')['ID'] | |
60
cd3c7f70f139
test backward compatibility with Orthanc 0.9.4
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parents:
59
diff
changeset
|
2858 j = UploadInstance(_REMOTE, 'PrivateTags.dcm')['ID'] |
cd3c7f70f139
test backward compatibility with Orthanc 0.9.4
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diff
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|
2859 |
cd3c7f70f139
test backward compatibility with Orthanc 0.9.4
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59
diff
changeset
|
2860 t = DoGet(_REMOTE, '/instances/%s/tags?simplify' % i) |
cd3c7f70f139
test backward compatibility with Orthanc 0.9.4
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diff
changeset
|
2861 with open(GetDatabasePath('PrivateMDNTagsSimplify.json'), 'r') as f: |
80
8466dbfcb22b
fix test against dcmtk 3.6.1
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
79
diff
changeset
|
2862 self.assertTrue(CompareTags(t, json.loads(f.read()), [ |
123 | 2863 # Tags for compatibility with DCMTK 3.6.0 |
2864 'RETIRED_OtherPatientIDs', | |
2865 'OtherPatientIDs', | |
2866 'ACR_NEMA_2C_VariablePixelDataGroupLength', | |
80
8466dbfcb22b
fix test against dcmtk 3.6.1
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diff
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|
2867 ])) |
55 | 2868 |
2869 t = DoGet(_REMOTE, '/instances/%s/tags' % i) | |
2870 with open(GetDatabasePath('PrivateMDNTagsFull.json'), 'r') as f: | |
87
4b24faec842b
test_reconstruct_json2 + test_private_tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
86
diff
changeset
|
2871 self.assertTrue(CompareTags(t, json.loads(f.read()), [ |
4b24faec842b
test_reconstruct_json2 + test_private_tags
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diff
changeset
|
2872 ])) |
55 | 2873 |
60
cd3c7f70f139
test backward compatibility with Orthanc 0.9.4
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59
diff
changeset
|
2874 t = DoGet(_REMOTE, '/instances/%s/tags?simplify' % j) |
cd3c7f70f139
test backward compatibility with Orthanc 0.9.4
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parents:
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diff
changeset
|
2875 with open(GetDatabasePath('PrivateTagsSimplify.json'), 'r') as f: |
80
8466dbfcb22b
fix test against dcmtk 3.6.1
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79
diff
changeset
|
2876 self.assertTrue(CompareTags(t, json.loads(f.read()), [ |
8466dbfcb22b
fix test against dcmtk 3.6.1
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
changeset
|
2877 ])) |
60
cd3c7f70f139
test backward compatibility with Orthanc 0.9.4
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
59
diff
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|
2878 |
cd3c7f70f139
test backward compatibility with Orthanc 0.9.4
Sebastien Jodogne <s.jodogne@gmail.com>
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59
diff
changeset
|
2879 t = DoGet(_REMOTE, '/instances/%s/tags' % j) |
cd3c7f70f139
test backward compatibility with Orthanc 0.9.4
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
changeset
|
2880 with open(GetDatabasePath('PrivateTagsFull.json'), 'r') as f: |
cd3c7f70f139
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Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
changeset
|
2881 a = json.loads(f.read()) |
65
09fc27e0899a
patch for testing windows builds
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
64
diff
changeset
|
2882 aa = json.dumps(a).replace('2e+022', '2e+22') |
09fc27e0899a
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diff
changeset
|
2883 tt = json.dumps(t).replace('2e+022', '2e+22') |
09fc27e0899a
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diff
changeset
|
2884 self.assertEqual(aa, tt) |
57 | 2885 |
2886 | |
2887 def test_batch_archive(self): | |
2888 UploadInstance(_REMOTE, 'Knee/T1/IM-0001-0001.dcm') | |
2889 UploadInstance(_REMOTE, 'Knee/T1/IM-0001-0002.dcm') | |
2890 UploadInstance(_REMOTE, 'Knee/T2/IM-0001-0001.dcm') | |
2891 UploadInstance(_REMOTE, 'Knee/T2/IM-0001-0002.dcm') | |
2892 UploadInstance(_REMOTE, 'Brainix/Epi/IM-0001-0001.dcm') | |
2893 UploadInstance(_REMOTE, 'Brainix/Epi/IM-0001-0002.dcm') | |
2894 UploadInstance(_REMOTE, 'Brainix/Flair/IM-0001-0001.dcm') | |
2895 UploadInstance(_REMOTE, 'Brainix/Flair/IM-0001-0002.dcm') | |
2896 | |
2897 s = DoPost(_REMOTE, '/tools/create-archive', [ ]) | |
2898 z = zipfile.ZipFile(StringIO(s), "r") | |
2899 self.assertEqual(0, len(z.namelist())) | |
2900 | |
2901 # One patient | |
2902 s = DoPost(_REMOTE, '/tools/create-archive', [ 'ca29faea-b6a0e17f-067743a1-8b778011-a48b2a17' ]) | |
2903 z = zipfile.ZipFile(StringIO(s), "r") | |
2904 self.assertEqual(4, len(z.namelist())) | |
2905 | |
2906 # One patient + twice its study + one series from other patient | |
2907 s = DoPost(_REMOTE, '/tools/create-archive', [ | |
2908 'ca29faea-b6a0e17f-067743a1-8b778011-a48b2a17', | |
2909 '0a9b3153-2512774b-2d9580de-1fc3dcf6-3bd83918', | |
2910 '1e2c125c-411b8e86-3f4fe68e-a7584dd3-c6da78f0' | |
2911 ]) | |
2912 z = zipfile.ZipFile(StringIO(s), "r") | |
2913 self.assertEqual(6, len(z.namelist())) | |
2914 | |
2915 # One patient + one series + one instance | |
2916 s = DoPost(_REMOTE, '/tools/create-archive', [ | |
2917 'ca29faea-b6a0e17f-067743a1-8b778011-a48b2a17', | |
2918 '1e2c125c-411b8e86-3f4fe68e-a7584dd3-c6da78f0', | |
2919 '1d429ccb-bdcc78a1-7d129d6a-ba4966ed-fe4dbd87' | |
2920 ]) | |
2921 z = zipfile.ZipFile(StringIO(s), "r") | |
2922 self.assertEqual(7, len(z.namelist())) | |
59
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test_decode_brainix_as_jpeg
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|
2923 |
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diff
changeset
|
2924 |
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test_decode_brainix_as_jpeg
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parents:
58
diff
changeset
|
2925 def test_decode_brainix_as_jpeg(self): |
84378ada15ab
test_decode_brainix_as_jpeg
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parents:
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diff
changeset
|
2926 i = UploadInstance(_REMOTE, 'Brainix/Epi/IM-0001-0001.dcm')['ID'] |
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|
2927 |
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58
diff
changeset
|
2928 j = GetImage(_REMOTE, '/instances/%s/preview' % i) |
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test_decode_brainix_as_jpeg
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diff
changeset
|
2929 self.assertEqual('PNG', j.format) |
84378ada15ab
test_decode_brainix_as_jpeg
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parents:
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diff
changeset
|
2930 self.assertEqual(j.size[0], 256) |
84378ada15ab
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diff
changeset
|
2931 self.assertEqual(j.size[1], 256) |
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|
2932 |
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diff
changeset
|
2933 j = GetImage(_REMOTE, '/instances/%s/preview' % i, headers = { 'Accept' : '*/*' }) |
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test_decode_brainix_as_jpeg
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diff
changeset
|
2934 self.assertEqual('PNG', j.format) |
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test_decode_brainix_as_jpeg
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diff
changeset
|
2935 |
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diff
changeset
|
2936 j = GetImage(_REMOTE, '/instances/%s/preview' % i, headers = { 'Accept' : 'image/*' }) |
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changeset
|
2937 self.assertEqual('PNG', j.format) |
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changeset
|
2938 |
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diff
changeset
|
2939 j = GetImage(_REMOTE, '/instances/%s/preview' % i, headers = { 'Accept' : 'image/png' }) |
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changeset
|
2940 self.assertEqual('PNG', j.format) |
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2941 |
84378ada15ab
test_decode_brainix_as_jpeg
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
58
diff
changeset
|
2942 j = GetImage(_REMOTE, '/instances/%s/preview' % i, headers = { 'Accept' : 'image/jpeg' }) |
84378ada15ab
test_decode_brainix_as_jpeg
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
58
diff
changeset
|
2943 self.assertEqual('JPEG', j.format) |
84378ada15ab
test_decode_brainix_as_jpeg
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
58
diff
changeset
|
2944 self.assertEqual(j.size[0], 256) |
84378ada15ab
test_decode_brainix_as_jpeg
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
58
diff
changeset
|
2945 self.assertEqual(j.size[1], 256) |
84378ada15ab
test_decode_brainix_as_jpeg
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
58
diff
changeset
|
2946 |
84378ada15ab
test_decode_brainix_as_jpeg
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
58
diff
changeset
|
2947 a = len(DoGet(_REMOTE, '/instances/%s/preview?quality=50' % i, headers = { 'Accept' : 'image/jpeg' })) |
84378ada15ab
test_decode_brainix_as_jpeg
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
58
diff
changeset
|
2948 b = len(DoGet(_REMOTE, '/instances/%s/preview' % i, headers = { 'Accept' : 'image/jpeg' })) |
84378ada15ab
test_decode_brainix_as_jpeg
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
58
diff
changeset
|
2949 self.assertLess(a, b) |
84378ada15ab
test_decode_brainix_as_jpeg
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
58
diff
changeset
|
2950 |
84378ada15ab
test_decode_brainix_as_jpeg
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
58
diff
changeset
|
2951 j = GetImage(_REMOTE, '/instances/%s/image-uint8' % i, headers = { 'Accept' : 'image/jpeg' }) |
84378ada15ab
test_decode_brainix_as_jpeg
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
58
diff
changeset
|
2952 self.assertEqual('JPEG', j.format) |
84378ada15ab
test_decode_brainix_as_jpeg
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
58
diff
changeset
|
2953 |
84378ada15ab
test_decode_brainix_as_jpeg
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
58
diff
changeset
|
2954 # 16bit encoding is not supported with JPEG |
84378ada15ab
test_decode_brainix_as_jpeg
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
58
diff
changeset
|
2955 self.assertRaises(Exception, lambda: GetImage(_REMOTE, '/instances/%s/image-uint16' % i, headers = { 'Accept' : 'image/jpeg' })) |
84378ada15ab
test_decode_brainix_as_jpeg
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
58
diff
changeset
|
2956 self.assertRaises(Exception, lambda: GetImage(_REMOTE, '/instances/%s/image-int16' % i, headers = { 'Accept' : 'image/jpeg' })) |
84378ada15ab
test_decode_brainix_as_jpeg
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
58
diff
changeset
|
2957 |
84378ada15ab
test_decode_brainix_as_jpeg
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
58
diff
changeset
|
2958 # No matching content type |
84378ada15ab
test_decode_brainix_as_jpeg
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
58
diff
changeset
|
2959 self.assertRaises(Exception, lambda: GetImage(_REMOTE, '/instances/%s/preview' % i, headers = { 'Accept' : 'application/pdf' })) |
69
83fd88230097
test_media_encodings
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
68
diff
changeset
|
2960 |
83fd88230097
test_media_encodings
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
68
diff
changeset
|
2961 |
83fd88230097
test_media_encodings
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
68
diff
changeset
|
2962 |
83fd88230097
test_media_encodings
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
68
diff
changeset
|
2963 def test_media_encodings(self): |
83fd88230097
test_media_encodings
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
68
diff
changeset
|
2964 ascii = UploadInstance(_REMOTE, 'Knee/T1/IM-0001-0001.dcm')['ID'] |
83fd88230097
test_media_encodings
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
68
diff
changeset
|
2965 latin1 = UploadInstance(_REMOTE, 'Brainix/Epi/IM-0001-0001.dcm')['ID'] |
83fd88230097
test_media_encodings
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
68
diff
changeset
|
2966 latin2 = UploadInstance(_REMOTE, 'MarekLatin2.dcm')['ID'] |
83fd88230097
test_media_encodings
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
68
diff
changeset
|
2967 |
83fd88230097
test_media_encodings
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
68
diff
changeset
|
2968 tmp = DoPost(_REMOTE, '/tools/create-media', [ascii,latin1,latin2]) |
83fd88230097
test_media_encodings
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
68
diff
changeset
|
2969 z = zipfile.ZipFile(StringIO(tmp), "r") |
83fd88230097
test_media_encodings
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
68
diff
changeset
|
2970 |
83fd88230097
test_media_encodings
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
68
diff
changeset
|
2971 self.assertEqual(4, len(z.namelist())) |
83fd88230097
test_media_encodings
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
68
diff
changeset
|
2972 self.assertTrue('IMAGES/IM0' in z.namelist()) |
83fd88230097
test_media_encodings
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
68
diff
changeset
|
2973 self.assertTrue('IMAGES/IM1' in z.namelist()) |
83fd88230097
test_media_encodings
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
68
diff
changeset
|
2974 self.assertTrue('IMAGES/IM2' in z.namelist()) |
83fd88230097
test_media_encodings
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
68
diff
changeset
|
2975 self.assertTrue('DICOMDIR' in z.namelist()) |
83fd88230097
test_media_encodings
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
68
diff
changeset
|
2976 |
83fd88230097
test_media_encodings
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
68
diff
changeset
|
2977 try: |
83fd88230097
test_media_encodings
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
68
diff
changeset
|
2978 os.remove('/tmp/DICOMDIR') |
83fd88230097
test_media_encodings
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
68
diff
changeset
|
2979 except: |
83fd88230097
test_media_encodings
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
68
diff
changeset
|
2980 # The file does not exist |
83fd88230097
test_media_encodings
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
68
diff
changeset
|
2981 pass |
83fd88230097
test_media_encodings
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
68
diff
changeset
|
2982 |
83fd88230097
test_media_encodings
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
68
diff
changeset
|
2983 z.extract('DICOMDIR', '/tmp') |
83fd88230097
test_media_encodings
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
68
diff
changeset
|
2984 a = subprocess.check_output([ FindExecutable('dciodvfy'), '/tmp/DICOMDIR' ], |
83fd88230097
test_media_encodings
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
68
diff
changeset
|
2985 stderr = subprocess.STDOUT).split('\n') |
83fd88230097
test_media_encodings
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
68
diff
changeset
|
2986 |
83fd88230097
test_media_encodings
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
68
diff
changeset
|
2987 a = subprocess.check_output([ FindExecutable('dcentvfy'), '/tmp/DICOMDIR' ], |
83fd88230097
test_media_encodings
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
68
diff
changeset
|
2988 stderr = subprocess.STDOUT).split('\n') |
83fd88230097
test_media_encodings
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
68
diff
changeset
|
2989 self.assertEqual(1, len(a)) |
83fd88230097
test_media_encodings
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
68
diff
changeset
|
2990 self.assertEqual('', a[0]) |
83fd88230097
test_media_encodings
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
68
diff
changeset
|
2991 |
83fd88230097
test_media_encodings
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
68
diff
changeset
|
2992 a = subprocess.check_output([ FindExecutable('dcm2xml'), '/tmp/DICOMDIR' ]) |
83fd88230097
test_media_encodings
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
68
diff
changeset
|
2993 self.assertTrue(re.search('1.3.46.670589.11.17521.5.0.3124.2008081908590448738', a) != None) |
83fd88230097
test_media_encodings
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
68
diff
changeset
|
2994 self.assertTrue(re.search('1.3.46.670589.11.0.0.11.4.2.0.8743.5.5396.2006120114333648576', a) != None) |
83fd88230097
test_media_encodings
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
68
diff
changeset
|
2995 self.assertTrue(re.search('1.2.826.0.1.3680043.2.1569.1.4.323026757.1700.1399452091.57', a) != None) |
83fd88230097
test_media_encodings
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
68
diff
changeset
|
2996 |
83fd88230097
test_media_encodings
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
68
diff
changeset
|
2997 os.remove('/tmp/DICOMDIR') |
71
48740070cbf1
TDD: tests for ongoing development of counter tags in C-Find
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
70
diff
changeset
|
2998 |
48740070cbf1
TDD: tests for ongoing development of counter tags in C-Find
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
70
diff
changeset
|
2999 |
48740070cbf1
TDD: tests for ongoing development of counter tags in C-Find
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
70
diff
changeset
|
3000 def test_findscu_counters(self): |
48740070cbf1
TDD: tests for ongoing development of counter tags in C-Find
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
70
diff
changeset
|
3001 UploadInstance(_REMOTE, 'Comunix/Ct/IM-0001-0001.dcm') |
48740070cbf1
TDD: tests for ongoing development of counter tags in C-Find
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
70
diff
changeset
|
3002 UploadInstance(_REMOTE, 'Comunix/Pet/IM-0001-0001.dcm') |
48740070cbf1
TDD: tests for ongoing development of counter tags in C-Find
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
70
diff
changeset
|
3003 UploadInstance(_REMOTE, 'Comunix/Pet/IM-0001-0002.dcm') |
48740070cbf1
TDD: tests for ongoing development of counter tags in C-Find
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
70
diff
changeset
|
3004 |
48740070cbf1
TDD: tests for ongoing development of counter tags in C-Find
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
70
diff
changeset
|
3005 i = CallFindScu([ '-k', '0008,0052=PATIENT', '-k', 'NumberOfPatientRelatedStudies' ]) |
48740070cbf1
TDD: tests for ongoing development of counter tags in C-Find
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
70
diff
changeset
|
3006 s = re.findall('\(0020,1200\).*?\[(.*?)\]', i) |
48740070cbf1
TDD: tests for ongoing development of counter tags in C-Find
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
70
diff
changeset
|
3007 self.assertEqual(1, len(s)) |
48740070cbf1
TDD: tests for ongoing development of counter tags in C-Find
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
70
diff
changeset
|
3008 self.assertTrue('1 ' in s) |
48740070cbf1
TDD: tests for ongoing development of counter tags in C-Find
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
70
diff
changeset
|
3009 |
48740070cbf1
TDD: tests for ongoing development of counter tags in C-Find
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
70
diff
changeset
|
3010 i = CallFindScu([ '-k', '0008,0052=PATIENT', '-k', 'NumberOfPatientRelatedSeries' ]) |
48740070cbf1
TDD: tests for ongoing development of counter tags in C-Find
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
70
diff
changeset
|
3011 s = re.findall('\(0020,1202\).*?\[(.*?)\]', i) |
48740070cbf1
TDD: tests for ongoing development of counter tags in C-Find
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
70
diff
changeset
|
3012 self.assertEqual(1, len(s)) |
48740070cbf1
TDD: tests for ongoing development of counter tags in C-Find
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
70
diff
changeset
|
3013 self.assertTrue('2 ' in s) |
48740070cbf1
TDD: tests for ongoing development of counter tags in C-Find
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
70
diff
changeset
|
3014 |
48740070cbf1
TDD: tests for ongoing development of counter tags in C-Find
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
70
diff
changeset
|
3015 i = CallFindScu([ '-k', '0008,0052=PATIENT', '-k', 'NumberOfPatientRelatedInstances' ]) |
48740070cbf1
TDD: tests for ongoing development of counter tags in C-Find
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
70
diff
changeset
|
3016 s = re.findall('\(0020,1204\).*?\[(.*?)\]', i) |
48740070cbf1
TDD: tests for ongoing development of counter tags in C-Find
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
70
diff
changeset
|
3017 self.assertEqual(1, len(s)) |
48740070cbf1
TDD: tests for ongoing development of counter tags in C-Find
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
70
diff
changeset
|
3018 self.assertTrue('3 ' in s) |
48740070cbf1
TDD: tests for ongoing development of counter tags in C-Find
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
70
diff
changeset
|
3019 |
48740070cbf1
TDD: tests for ongoing development of counter tags in C-Find
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
70
diff
changeset
|
3020 i = CallFindScu([ '-k', '0008,0052=STUDY', '-k', 'NumberOfStudyRelatedSeries' ]) |
48740070cbf1
TDD: tests for ongoing development of counter tags in C-Find
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
70
diff
changeset
|
3021 s = re.findall('\(0020,1206\).*?\[(.*?)\]', i) |
48740070cbf1
TDD: tests for ongoing development of counter tags in C-Find
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
70
diff
changeset
|
3022 self.assertEqual(1, len(s)) |
48740070cbf1
TDD: tests for ongoing development of counter tags in C-Find
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
70
diff
changeset
|
3023 self.assertTrue('2 ' in s) |
48740070cbf1
TDD: tests for ongoing development of counter tags in C-Find
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
70
diff
changeset
|
3024 |
48740070cbf1
TDD: tests for ongoing development of counter tags in C-Find
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
70
diff
changeset
|
3025 i = CallFindScu([ '-k', '0008,0052=STUDY', '-k', 'NumberOfStudyRelatedInstances' ]) |
48740070cbf1
TDD: tests for ongoing development of counter tags in C-Find
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
70
diff
changeset
|
3026 s = re.findall('\(0020,1208\).*?\[(.*?)\]', i) |
48740070cbf1
TDD: tests for ongoing development of counter tags in C-Find
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
70
diff
changeset
|
3027 self.assertEqual(1, len(s)) |
48740070cbf1
TDD: tests for ongoing development of counter tags in C-Find
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
70
diff
changeset
|
3028 self.assertTrue('3 ' in s) |
48740070cbf1
TDD: tests for ongoing development of counter tags in C-Find
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
70
diff
changeset
|
3029 |
48740070cbf1
TDD: tests for ongoing development of counter tags in C-Find
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
70
diff
changeset
|
3030 i = CallFindScu([ '-k', '0008,0052=SERIES', '-k', 'NumberOfSeriesRelatedInstances' ]) |
48740070cbf1
TDD: tests for ongoing development of counter tags in C-Find
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
70
diff
changeset
|
3031 s = re.findall('\(0020,1209\).*?\[(.*?)\]', i) |
48740070cbf1
TDD: tests for ongoing development of counter tags in C-Find
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
70
diff
changeset
|
3032 self.assertEqual(2, len(s)) |
48740070cbf1
TDD: tests for ongoing development of counter tags in C-Find
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
70
diff
changeset
|
3033 self.assertTrue('1 ' in s) |
48740070cbf1
TDD: tests for ongoing development of counter tags in C-Find
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
70
diff
changeset
|
3034 self.assertTrue('2 ' in s) |
48740070cbf1
TDD: tests for ongoing development of counter tags in C-Find
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
70
diff
changeset
|
3035 |
48740070cbf1
TDD: tests for ongoing development of counter tags in C-Find
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
70
diff
changeset
|
3036 i = CallFindScu([ '-k', '0008,0052=STUDY', '-k', 'ModalitiesInStudy' ]) |
48740070cbf1
TDD: tests for ongoing development of counter tags in C-Find
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
70
diff
changeset
|
3037 s = re.findall('\(0008,0061\).*?\[(.*?)\]', i) |
48740070cbf1
TDD: tests for ongoing development of counter tags in C-Find
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
70
diff
changeset
|
3038 self.assertEqual(1, len(s)) |
48740070cbf1
TDD: tests for ongoing development of counter tags in C-Find
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
70
diff
changeset
|
3039 t = map(lambda x: x.strip(), s[0].split('\\')) |
48740070cbf1
TDD: tests for ongoing development of counter tags in C-Find
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
70
diff
changeset
|
3040 self.assertTrue('PT' in t) |
48740070cbf1
TDD: tests for ongoing development of counter tags in C-Find
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
70
diff
changeset
|
3041 self.assertTrue('CT' in t) |
48740070cbf1
TDD: tests for ongoing development of counter tags in C-Find
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
70
diff
changeset
|
3042 |
48740070cbf1
TDD: tests for ongoing development of counter tags in C-Find
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
70
diff
changeset
|
3043 i = CallFindScu([ '-k', '0008,0052=STUDY', '-k', 'SOPClassesInStudy' ]) |
48740070cbf1
TDD: tests for ongoing development of counter tags in C-Find
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
70
diff
changeset
|
3044 s = re.findall('\(0008,0062\).*?\[(.*?)\]', i) |
48740070cbf1
TDD: tests for ongoing development of counter tags in C-Find
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
70
diff
changeset
|
3045 self.assertEqual(1, len(s)) |
176
48cc188ffb09
strip trailing 0 char that appears with some findscu versions
am@osimis.io
parents:
175
diff
changeset
|
3046 t = map(lambda x: x.strip('\x00'), s[0].split('\\')) |
71
48740070cbf1
TDD: tests for ongoing development of counter tags in C-Find
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
70
diff
changeset
|
3047 self.assertTrue('1.2.840.10008.5.1.4.1.1.2' in t) |
48740070cbf1
TDD: tests for ongoing development of counter tags in C-Find
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
70
diff
changeset
|
3048 self.assertTrue('1.2.840.10008.5.1.4.1.1.128' in t) |
48740070cbf1
TDD: tests for ongoing development of counter tags in C-Find
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
70
diff
changeset
|
3049 |
48740070cbf1
TDD: tests for ongoing development of counter tags in C-Find
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
70
diff
changeset
|
3050 |
78
b89af51797ff
test_decode_transfer_syntax
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
74
diff
changeset
|
3051 def test_decode_transfer_syntax(self): |
b89af51797ff
test_decode_transfer_syntax
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
74
diff
changeset
|
3052 def Check(t, md5): |
b89af51797ff
test_decode_transfer_syntax
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
74
diff
changeset
|
3053 i = UploadInstance(_REMOTE, 'TransferSyntaxes/%s.dcm' % t)['ID'] |
b89af51797ff
test_decode_transfer_syntax
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
74
diff
changeset
|
3054 |
89
74b7b9aed5f8
test TransferSyntax metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
87
diff
changeset
|
3055 if t != '1.2.840.10008.1.2': # This file has no meta header |
74b7b9aed5f8
test TransferSyntax metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
87
diff
changeset
|
3056 transferSyntax = DoGet(_REMOTE, '/instances/%s/metadata/TransferSyntax' % i) |
74b7b9aed5f8
test TransferSyntax metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
87
diff
changeset
|
3057 self.assertEqual(t, transferSyntax) |
74b7b9aed5f8
test TransferSyntax metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
87
diff
changeset
|
3058 |
78
b89af51797ff
test_decode_transfer_syntax
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
74
diff
changeset
|
3059 if md5 == None: |
b89af51797ff
test_decode_transfer_syntax
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
74
diff
changeset
|
3060 self.assertRaises(Exception, lambda: DoGet(_REMOTE, '/instances/%s/preview' % i)) |
b89af51797ff
test_decode_transfer_syntax
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
74
diff
changeset
|
3061 else: |
b89af51797ff
test_decode_transfer_syntax
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
74
diff
changeset
|
3062 m = ComputeMD5(DoGet(_REMOTE, '/instances/%s/preview' % i)) |
b89af51797ff
test_decode_transfer_syntax
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
74
diff
changeset
|
3063 self.assertEqual(m, md5) |
b89af51797ff
test_decode_transfer_syntax
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
74
diff
changeset
|
3064 |
b89af51797ff
test_decode_transfer_syntax
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
74
diff
changeset
|
3065 Check('1.2.840.10008.1.2.1', 'fae08d5415c4c0cd2cdbae4522408631') |
b89af51797ff
test_decode_transfer_syntax
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
74
diff
changeset
|
3066 Check('1.2.840.10008.1.2.2', 'f3d9784768b8feb54d6a50b6d5c37682') |
b89af51797ff
test_decode_transfer_syntax
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
74
diff
changeset
|
3067 Check('1.2.840.10008.1.2.4.50', '496326046974eea718dbc16b997c646b') |
b89af51797ff
test_decode_transfer_syntax
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
74
diff
changeset
|
3068 Check('1.2.840.10008.1.2.4.51', 'ccbe75909fe5c9f7361b48416a53fc41') |
b89af51797ff
test_decode_transfer_syntax
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
74
diff
changeset
|
3069 Check('1.2.840.10008.1.2.4.57', '7bbefe11d976b1be4e568915c6a82fc3') |
b89af51797ff
test_decode_transfer_syntax
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
74
diff
changeset
|
3070 Check('1.2.840.10008.1.2.4.70', '7132cfbc457305b04b59787030c785d2') |
b89af51797ff
test_decode_transfer_syntax
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
74
diff
changeset
|
3071 Check('1.2.840.10008.1.2.4.80', '6ff51ae525d362e0d04f550a64075a0e') |
b89af51797ff
test_decode_transfer_syntax
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
74
diff
changeset
|
3072 Check('1.2.840.10008.1.2.4.81', '801579ae7cbf28e604ea74f2c99fa2ca') |
b89af51797ff
test_decode_transfer_syntax
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
74
diff
changeset
|
3073 Check('1.2.840.10008.1.2.5', '6ff51ae525d362e0d04f550a64075a0e') # RLE, supported since Orthanc 1.0.1 |
b89af51797ff
test_decode_transfer_syntax
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
74
diff
changeset
|
3074 Check('1.2.840.10008.1.2', 'd54aed9f67a100984b42942cc2e9939b') |
b89af51797ff
test_decode_transfer_syntax
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
74
diff
changeset
|
3075 Check('1.2.840.10008.1.2.4.90', None) # JPEG-2000 image, not supported |
b89af51797ff
test_decode_transfer_syntax
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
74
diff
changeset
|
3076 Check('1.2.840.10008.1.2.4.91', None) # JPEG-2000 image, not supported |
79 | 3077 |
3078 | |
3079 def test_raw_frame(self): | |
3080 s = UploadInstance(_REMOTE, 'Issue22.dcm')['ID'] | |
3081 self.assertEqual(24, len(DoGet(_REMOTE, '/instances/%s/frames' % s))) | |
3082 a = DoGet(_REMOTE, '/instances/%s/frames/0/raw' % s) | |
3083 self.assertEqual(512 * 512 * 2, len(a)) | |
3084 self.assertEqual(512 * 512 * 2, len(DoGet(_REMOTE, '/instances/%s/frames/23/raw' % s))) | |
3085 self.assertRaises(Exception, lambda: DoGet(_REMOTE, '/instances/%s/frames/24/raw' % s)) | |
3086 self.assertEqual('1914287dc4d958eca21fdaacfb3482fa', ComputeMD5(a)) | |
3087 | |
3088 s = UploadInstance(_REMOTE, 'Multiframe.dcm')['ID'] | |
3089 self.assertEqual(76, len(DoGet(_REMOTE, '/instances/%s/frames' % s))) | |
3090 self.assertEqual(186274, len(DoGet(_REMOTE, '/instances/%s/frames/0/raw' % s))) | |
3091 self.assertEqual(189424, len(DoGet(_REMOTE, '/instances/%s/frames/75/raw' % s))) | |
3092 self.assertRaises(Exception, lambda: DoGet(_REMOTE, '/instances/%s/frames/76/raw' % s)) | |
3093 im = GetImage(_REMOTE, '/instances/%s/frames/0/raw' % s) | |
3094 self.assertEqual("L", im.mode) | |
3095 self.assertEqual(512, im.size[0]) | |
3096 self.assertEqual(512, im.size[1]) | |
3097 | |
3098 # Test an image with 2 JPEG frames spread over multiple fragments | |
3099 s = UploadInstance(_REMOTE, 'LenaTwiceWithFragments.dcm')['ID'] | |
3100 self.assertEqual(2, len(DoGet(_REMOTE, '/instances/%s/frames' % s))) | |
3101 a = DoGet(_REMOTE, '/instances/%s/frames/0/raw' % s) | |
3102 b = DoGet(_REMOTE, '/instances/%s/frames/1/raw' % s) | |
3103 self.assertEqual(69214, len(a)) | |
3104 self.assertEqual(ComputeMD5(a), ComputeMD5(b)) | |
3105 self.assertRaises(Exception, lambda: DoGet(_REMOTE, '/instances/%s/frames/2/raw' % s)) | |
3106 im = GetImage(_REMOTE, '/instances/%s/frames/0/raw' % s) | |
3107 self.assertEqual("RGB", im.mode) | |
3108 self.assertEqual(512, im.size[0]) | |
3109 self.assertEqual(512, im.size[1]) | |
3110 im = GetImage(_REMOTE, '/instances/%s/frames/0/preview' % s) | |
3111 self.assertEqual("RGB", im.mode) | |
3112 self.assertEqual(512, im.size[0]) | |
3113 self.assertEqual(512, im.size[1]) | |
81 | 3114 |
3115 | |
3116 | |
3117 def test_rest_movescu(self): | |
3118 self.assertEqual(0, len(DoGet(_REMOTE, '/patients'))) | |
3119 | |
3120 # Upload 4 instances | |
3121 UploadInstance(_REMOTE, 'Brainix/Flair/IM-0001-0001.dcm') | |
3122 UploadInstance(_REMOTE, 'Brainix/Flair/IM-0001-0002.dcm') | |
3123 UploadInstance(_REMOTE, 'Brainix/Epi/IM-0001-0001.dcm') | |
3124 UploadInstance(_REMOTE, 'Knee/T2/IM-0001-0001.dcm') | |
3125 | |
3126 self.assertEqual(2, len(DoGet(_REMOTE, '/patients'))) | |
3127 for p in DoGet(_REMOTE, '/patients'): | |
3128 DoPost(_REMOTE, '/modalities/orthanctest/store', p) | |
3129 DoDelete(_REMOTE, '/patients/%s' % p) | |
3130 | |
3131 self.assertEqual(0, len(DoGet(_REMOTE, '/patients'))) | |
3132 | |
3133 # Upload instance Brainix/Flair/IM-0001-0001.dcm | |
3134 DoPost(_REMOTE, '/modalities/orthanctest/move', { 'Level' : 'Instance', | |
3135 'Resources' : [ | |
3136 { | |
3137 'StudyInstanceUID' : '2.16.840.1.113669.632.20.1211.10000357775', | |
3138 'SeriesInstanceUID' : '1.3.46.670589.11.0.0.11.4.2.0.8743.5.5396.2006120114285654497', | |
3139 'SOPInstanceUID' : '1.3.46.670589.11.0.0.11.4.2.0.8743.5.5396.2006120114314079549', | |
3140 } | |
3141 ]}) | |
3142 | |
3143 # Upload series Brainix/Flair/* | |
3144 self.assertEqual(1, len(DoGet(_REMOTE, '/patients'))) | |
3145 self.assertEqual(1, len(DoGet(_REMOTE, '/studies'))) | |
3146 self.assertEqual(1, len(DoGet(_REMOTE, '/series'))) | |
3147 self.assertEqual(1, len(DoGet(_REMOTE, '/instances'))) | |
3148 | |
3149 DoPost(_REMOTE, '/modalities/orthanctest/move', { 'Level' : 'Series', | |
3150 'Resources' : [ | |
3151 { | |
3152 'StudyInstanceUID' : '2.16.840.1.113669.632.20.1211.10000357775', | |
3153 'SeriesInstanceUID' : '1.3.46.670589.11.0.0.11.4.2.0.8743.5.5396.2006120114285654497', | |
3154 } | |
3155 ]}) | |
3156 self.assertEqual(1, len(DoGet(_REMOTE, '/patients'))) | |
3157 self.assertEqual(1, len(DoGet(_REMOTE, '/studies'))) | |
3158 self.assertEqual(1, len(DoGet(_REMOTE, '/series'))) | |
3159 self.assertEqual(2, len(DoGet(_REMOTE, '/instances'))) | |
3160 | |
3161 # Upload series Brainix/Epi/* | |
3162 DoPost(_REMOTE, '/modalities/orthanctest/move', { 'Level' : 'Series', | |
3163 'Resources' : [ | |
3164 { | |
3165 'StudyInstanceUID' : '2.16.840.1.113669.632.20.1211.10000357775', | |
3166 'SeriesInstanceUID' : '1.3.46.670589.11.0.0.11.4.2.0.8743.5.5396.2006120114314125550', | |
3167 } | |
3168 ]}) | |
3169 self.assertEqual(1, len(DoGet(_REMOTE, '/patients'))) | |
3170 self.assertEqual(1, len(DoGet(_REMOTE, '/studies'))) | |
3171 self.assertEqual(2, len(DoGet(_REMOTE, '/series'))) | |
3172 self.assertEqual(3, len(DoGet(_REMOTE, '/instances'))) | |
3173 | |
3174 # Upload study Knee/* | |
3175 DoPost(_REMOTE, '/modalities/orthanctest/move', { 'Level' : 'Study', | |
3176 'Resources' : [ | |
3177 { | |
3178 'StudyInstanceUID' : '2.16.840.1.113669.632.20.121711.10000160881', | |
3179 } | |
3180 ]}) | |
3181 self.assertEqual(2, len(DoGet(_REMOTE, '/patients'))) | |
3182 self.assertEqual(2, len(DoGet(_REMOTE, '/studies'))) | |
3183 self.assertEqual(3, len(DoGet(_REMOTE, '/series'))) | |
3184 self.assertEqual(4, len(DoGet(_REMOTE, '/instances'))) | |
3185 | |
3186 # Reset | |
3187 for p in DoGet(_REMOTE, '/patients'): | |
3188 DoDelete(_REMOTE, '/patients/%s' % p) | |
3189 | |
3190 self.assertEqual(0, len(DoGet(_REMOTE, '/patients'))) | |
3191 | |
3192 | |
3193 # Upload all at once | |
3194 DoPost(_REMOTE, '/modalities/orthanctest/move', { 'Level' : 'Study', | |
3195 'Resources' : [ | |
3196 { | |
3197 'StudyInstanceUID' : '2.16.840.1.113669.632.20.121711.10000160881', | |
3198 }, | |
3199 { | |
3200 'StudyInstanceUID' : '2.16.840.1.113669.632.20.1211.10000357775', | |
3201 } | |
3202 ]}) | |
3203 self.assertEqual(2, len(DoGet(_REMOTE, '/patients'))) | |
3204 self.assertEqual(2, len(DoGet(_REMOTE, '/studies'))) | |
3205 self.assertEqual(3, len(DoGet(_REMOTE, '/series'))) | |
3206 self.assertEqual(4, len(DoGet(_REMOTE, '/instances'))) | |
3207 | |
86
0401ef51f5c1
test_reconstruct_json
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
83
diff
changeset
|
3208 |
0401ef51f5c1
test_reconstruct_json
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
83
diff
changeset
|
3209 |
0401ef51f5c1
test_reconstruct_json
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
83
diff
changeset
|
3210 def test_reconstruct_json(self): |
0401ef51f5c1
test_reconstruct_json
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
83
diff
changeset
|
3211 self.assertEqual(0, len(DoGet(_REMOTE, '/patients'))) |
0401ef51f5c1
test_reconstruct_json
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
83
diff
changeset
|
3212 |
0401ef51f5c1
test_reconstruct_json
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
83
diff
changeset
|
3213 instance = UploadInstance(_REMOTE, 'DummyCT.dcm')['ID'] |
0401ef51f5c1
test_reconstruct_json
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
83
diff
changeset
|
3214 first = DoGet(_REMOTE, '/instances/%s/tags' % instance) |
0401ef51f5c1
test_reconstruct_json
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
83
diff
changeset
|
3215 |
0401ef51f5c1
test_reconstruct_json
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
83
diff
changeset
|
3216 self.assertEqual('TWINOW', first['0008,1010']['Value']) |
0401ef51f5c1
test_reconstruct_json
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
83
diff
changeset
|
3217 self.assertEqual(2, len(DoGet(_REMOTE, '/instances/%s/attachments' % instance))) |
0401ef51f5c1
test_reconstruct_json
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
83
diff
changeset
|
3218 |
0401ef51f5c1
test_reconstruct_json
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
83
diff
changeset
|
3219 # Cannot delete the "DICOM" attachment |
0401ef51f5c1
test_reconstruct_json
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
83
diff
changeset
|
3220 self.assertRaises(Exception, lambda: DoDelete(_REMOTE, '/instances/%s/attachments/dicom' % instance)) |
0401ef51f5c1
test_reconstruct_json
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
83
diff
changeset
|
3221 |
0401ef51f5c1
test_reconstruct_json
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
83
diff
changeset
|
3222 # Can delete the "DICOM as JSON" attachment |
0401ef51f5c1
test_reconstruct_json
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
83
diff
changeset
|
3223 r = DoDelete(_REMOTE, '/instances/%s/attachments/dicom-as-json' % instance) |
0401ef51f5c1
test_reconstruct_json
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
83
diff
changeset
|
3224 self.assertTrue(type(r) is dict and len(r) == 0) |
0401ef51f5c1
test_reconstruct_json
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
83
diff
changeset
|
3225 |
0401ef51f5c1
test_reconstruct_json
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
83
diff
changeset
|
3226 # Only the "DICOM" attachment subsists |
0401ef51f5c1
test_reconstruct_json
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
83
diff
changeset
|
3227 self.assertEqual(1, len(DoGet(_REMOTE, '/instances/%s/attachments' % instance))) |
0401ef51f5c1
test_reconstruct_json
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
83
diff
changeset
|
3228 |
0401ef51f5c1
test_reconstruct_json
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
83
diff
changeset
|
3229 # Cannot manually reconstruct the "DICOM as JSON" attachment |
0401ef51f5c1
test_reconstruct_json
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
83
diff
changeset
|
3230 self.assertRaises(Exception, lambda: DoPut(_REMOTE, '/patients/%s/attachments/dicom-as-json' % patient, 'hello')) |
0401ef51f5c1
test_reconstruct_json
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
83
diff
changeset
|
3231 |
0401ef51f5c1
test_reconstruct_json
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
83
diff
changeset
|
3232 # Transparently reconstruct the "DICOM as JSON" attachment |
0401ef51f5c1
test_reconstruct_json
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
83
diff
changeset
|
3233 self.assertRaises(Exception, lambda: DoGet(_REMOTE, '/instances/%s/attachments/dicom-as-json' % instance)) |
0401ef51f5c1
test_reconstruct_json
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parents:
83
diff
changeset
|
3234 second = DoGet(_REMOTE, '/instances/%s/tags' % instance) |
0401ef51f5c1
test_reconstruct_json
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
83
diff
changeset
|
3235 self.assertEqual(2, len(DoGet(_REMOTE, '/instances/%s/attachments' % instance))) |
0401ef51f5c1
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Sebastien Jodogne <s.jodogne@gmail.com>
parents:
83
diff
changeset
|
3236 |
0401ef51f5c1
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Sebastien Jodogne <s.jodogne@gmail.com>
parents:
83
diff
changeset
|
3237 third = DoGet(_REMOTE, '/instances/%s/attachments/dicom-as-json/data' % instance) |
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Sebastien Jodogne <s.jodogne@gmail.com>
parents:
83
diff
changeset
|
3238 self.assertEqual(str(first), str(second)) |
0401ef51f5c1
test_reconstruct_json
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
83
diff
changeset
|
3239 self.assertEqual(str(first), str(third)) |
87
4b24faec842b
test_reconstruct_json2 + test_private_tags
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parents:
86
diff
changeset
|
3240 |
4b24faec842b
test_reconstruct_json2 + test_private_tags
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parents:
86
diff
changeset
|
3241 |
4b24faec842b
test_reconstruct_json2 + test_private_tags
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parents:
86
diff
changeset
|
3242 def test_reconstruct_json2(self): |
4b24faec842b
test_reconstruct_json2 + test_private_tags
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parents:
86
diff
changeset
|
3243 self.assertEqual(0, len(DoGet(_REMOTE, '/patients'))) |
4b24faec842b
test_reconstruct_json2 + test_private_tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
86
diff
changeset
|
3244 |
4b24faec842b
test_reconstruct_json2 + test_private_tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
86
diff
changeset
|
3245 a = UploadInstance(_REMOTE, 'Brainix/Flair/IM-0001-0001.dcm')['ID'] |
4b24faec842b
test_reconstruct_json2 + test_private_tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
86
diff
changeset
|
3246 b = UploadInstance(_REMOTE, 'Knee/T2/IM-0001-0001.dcm')['ID'] |
4b24faec842b
test_reconstruct_json2 + test_private_tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
86
diff
changeset
|
3247 |
4b24faec842b
test_reconstruct_json2 + test_private_tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
86
diff
changeset
|
3248 self.assertEqual('BRAINIX', DoGet(_REMOTE, '/instances/%s/tags?simplify' % a)['PatientName']) |
4b24faec842b
test_reconstruct_json2 + test_private_tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
86
diff
changeset
|
3249 self.assertEqual('KNEE', DoGet(_REMOTE, '/instances/%s/tags?simplify' % b)['PatientName']) |
4b24faec842b
test_reconstruct_json2 + test_private_tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
86
diff
changeset
|
3250 |
4b24faec842b
test_reconstruct_json2 + test_private_tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
86
diff
changeset
|
3251 self.assertEqual(2, len(DoGet(_REMOTE, '/instances/%s/attachments' % a))) |
4b24faec842b
test_reconstruct_json2 + test_private_tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
86
diff
changeset
|
3252 self.assertEqual(2, len(DoGet(_REMOTE, '/instances/%s/attachments' % b))) |
4b24faec842b
test_reconstruct_json2 + test_private_tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
86
diff
changeset
|
3253 |
4b24faec842b
test_reconstruct_json2 + test_private_tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
86
diff
changeset
|
3254 DoPost(_REMOTE, '/tools/invalidate-tags', '', 'text/plain') |
4b24faec842b
test_reconstruct_json2 + test_private_tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
86
diff
changeset
|
3255 |
4b24faec842b
test_reconstruct_json2 + test_private_tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
86
diff
changeset
|
3256 self.assertEqual(1, len(DoGet(_REMOTE, '/instances/%s/attachments' % a))) |
4b24faec842b
test_reconstruct_json2 + test_private_tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
86
diff
changeset
|
3257 self.assertEqual(1, len(DoGet(_REMOTE, '/instances/%s/attachments' % b))) |
4b24faec842b
test_reconstruct_json2 + test_private_tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
86
diff
changeset
|
3258 |
4b24faec842b
test_reconstruct_json2 + test_private_tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
86
diff
changeset
|
3259 self.assertEqual('BRAINIX', DoGet(_REMOTE, '/instances/%s/tags?simplify' % a)['PatientName']) |
4b24faec842b
test_reconstruct_json2 + test_private_tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
86
diff
changeset
|
3260 self.assertEqual('KNEE', DoGet(_REMOTE, '/instances/%s/tags?simplify' % b)['PatientName']) |
4b24faec842b
test_reconstruct_json2 + test_private_tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
86
diff
changeset
|
3261 |
4b24faec842b
test_reconstruct_json2 + test_private_tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
86
diff
changeset
|
3262 self.assertEqual(2, len(DoGet(_REMOTE, '/instances/%s/attachments' % a))) |
4b24faec842b
test_reconstruct_json2 + test_private_tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
86
diff
changeset
|
3263 self.assertEqual(2, len(DoGet(_REMOTE, '/instances/%s/attachments' % b))) |
4b24faec842b
test_reconstruct_json2 + test_private_tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
86
diff
changeset
|
3264 |
4b24faec842b
test_reconstruct_json2 + test_private_tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
86
diff
changeset
|
3265 |
4b24faec842b
test_reconstruct_json2 + test_private_tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
86
diff
changeset
|
3266 def test_private_tags(self): |
4b24faec842b
test_reconstruct_json2 + test_private_tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
86
diff
changeset
|
3267 i = UploadInstance(_REMOTE, 'PrivateMDNTags.dcm')['ID'] |
4b24faec842b
test_reconstruct_json2 + test_private_tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
86
diff
changeset
|
3268 t = DoGet(_REMOTE, '/instances/%s/tags?simplify' % i) |
4b24faec842b
test_reconstruct_json2 + test_private_tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
86
diff
changeset
|
3269 self.assertEqual('1.2.840.113704.1.111.6320.1342451261.21', t['PET-CT Multi Modality Name']) |
4b24faec842b
test_reconstruct_json2 + test_private_tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
86
diff
changeset
|
3270 self.assertEqual('p37s0_na_ctac.img', t['Original Image Filename']) |
4b24faec842b
test_reconstruct_json2 + test_private_tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
86
diff
changeset
|
3271 |
92
dbcbffb889da
test_findscu_encoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
89
diff
changeset
|
3272 |
dbcbffb889da
test_findscu_encoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
89
diff
changeset
|
3273 def test_findscu_encoding(self): |
dbcbffb889da
test_findscu_encoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
89
diff
changeset
|
3274 # Check out ../Database/Encodings/Generate.sh |
dbcbffb889da
test_findscu_encoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
89
diff
changeset
|
3275 TEST = u'Test-éüäöòДΘĝדصķћ๛ネİ' |
dbcbffb889da
test_findscu_encoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
89
diff
changeset
|
3276 ENCODINGS = { |
dbcbffb889da
test_findscu_encoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
89
diff
changeset
|
3277 'Arabic' : [ 'ISO_IR 127' ], |
dbcbffb889da
test_findscu_encoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
89
diff
changeset
|
3278 'Ascii' : [ 'ISO_IR 6' ], # More accurately, ISO 646 |
dbcbffb889da
test_findscu_encoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
89
diff
changeset
|
3279 'Cyrillic' : [ 'ISO_IR 144' ], |
dbcbffb889da
test_findscu_encoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
89
diff
changeset
|
3280 'Greek' : [ 'ISO_IR 126' ], |
dbcbffb889da
test_findscu_encoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
89
diff
changeset
|
3281 'Hebrew' : [ 'ISO_IR 138' ], |
dbcbffb889da
test_findscu_encoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
89
diff
changeset
|
3282 'Japanese' : [ 'ISO_IR 13', 'shift-jis' ], |
dbcbffb889da
test_findscu_encoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
89
diff
changeset
|
3283 'Latin1' : [ 'ISO_IR 100' ], |
dbcbffb889da
test_findscu_encoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
89
diff
changeset
|
3284 'Latin2' : [ 'ISO_IR 101' ], |
dbcbffb889da
test_findscu_encoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
89
diff
changeset
|
3285 'Latin3' : [ 'ISO_IR 109' ], |
dbcbffb889da
test_findscu_encoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
89
diff
changeset
|
3286 'Latin4' : [ 'ISO_IR 110' ], |
dbcbffb889da
test_findscu_encoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
89
diff
changeset
|
3287 'Latin5' : [ 'ISO_IR 148' ], |
dbcbffb889da
test_findscu_encoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
89
diff
changeset
|
3288 'Thai' : [ 'ISO_IR 166', 'tis-620' ], |
dbcbffb889da
test_findscu_encoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
89
diff
changeset
|
3289 'Utf8' : [ 'ISO_IR 192' ], |
dbcbffb889da
test_findscu_encoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
89
diff
changeset
|
3290 } |
dbcbffb889da
test_findscu_encoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
89
diff
changeset
|
3291 |
dbcbffb889da
test_findscu_encoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
89
diff
changeset
|
3292 for name in ENCODINGS.iterkeys(): |
dbcbffb889da
test_findscu_encoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
89
diff
changeset
|
3293 if len(ENCODINGS[name]) == 1: |
dbcbffb889da
test_findscu_encoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
89
diff
changeset
|
3294 ENCODINGS[name].append(name.lower()) |
dbcbffb889da
test_findscu_encoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
89
diff
changeset
|
3295 |
dbcbffb889da
test_findscu_encoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
89
diff
changeset
|
3296 UploadInstance(_REMOTE, 'Encodings/Lena-utf8.dcm') |
dbcbffb889da
test_findscu_encoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
89
diff
changeset
|
3297 |
dbcbffb889da
test_findscu_encoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
89
diff
changeset
|
3298 for name in ENCODINGS.iterkeys(): |
dbcbffb889da
test_findscu_encoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
89
diff
changeset
|
3299 self.assertEqual(name, DoPut(_REMOTE, '/tools/default-encoding', name)) |
dbcbffb889da
test_findscu_encoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
89
diff
changeset
|
3300 self.assertEqual(name, DoGet(_REMOTE, '/tools/default-encoding')) |
dbcbffb889da
test_findscu_encoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
89
diff
changeset
|
3301 |
dbcbffb889da
test_findscu_encoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
89
diff
changeset
|
3302 i = CallFindScu([ '-k', '0008,0052=STUDY', |
dbcbffb889da
test_findscu_encoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
89
diff
changeset
|
3303 '-k', 'SpecificCharacterSet', |
dbcbffb889da
test_findscu_encoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
89
diff
changeset
|
3304 '-k', 'PatientName' ]) |
dbcbffb889da
test_findscu_encoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
89
diff
changeset
|
3305 |
dbcbffb889da
test_findscu_encoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
89
diff
changeset
|
3306 characterSet = re.findall('\(0008,0005\).*?\[(.*?)\]', i) |
dbcbffb889da
test_findscu_encoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
89
diff
changeset
|
3307 self.assertEqual(1, len(characterSet)) |
dbcbffb889da
test_findscu_encoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
89
diff
changeset
|
3308 self.assertEqual(ENCODINGS[name][0], characterSet[0].strip()) |
dbcbffb889da
test_findscu_encoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
89
diff
changeset
|
3309 |
dbcbffb889da
test_findscu_encoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
89
diff
changeset
|
3310 patientName = re.findall('\(0010,0010\).*?\[(.*?)\]', i) |
dbcbffb889da
test_findscu_encoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
89
diff
changeset
|
3311 self.assertEqual(1, len(patientName)) |
dbcbffb889da
test_findscu_encoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
89
diff
changeset
|
3312 |
dbcbffb889da
test_findscu_encoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
89
diff
changeset
|
3313 expected = TEST.encode(ENCODINGS[name][1], 'ignore') |
dbcbffb889da
test_findscu_encoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
89
diff
changeset
|
3314 self.assertEqual(expected, patientName[0].strip()) |
dbcbffb889da
test_findscu_encoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
89
diff
changeset
|
3315 |
dbcbffb889da
test_findscu_encoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
89
diff
changeset
|
3316 |
dbcbffb889da
test_findscu_encoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
89
diff
changeset
|
3317 #for master in ENCODINGS: |
dbcbffb889da
test_findscu_encoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
89
diff
changeset
|
3318 for master in [ 'Latin1', 'Utf8', 'Cyrillic' ]: # Shortcut to speedup tests |
dbcbffb889da
test_findscu_encoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
89
diff
changeset
|
3319 self.assertEqual(master, DoPut(_REMOTE, '/tools/default-encoding', master)) |
dbcbffb889da
test_findscu_encoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
89
diff
changeset
|
3320 self.assertEqual(master, DoGet(_REMOTE, '/tools/default-encoding')) |
dbcbffb889da
test_findscu_encoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
89
diff
changeset
|
3321 |
dbcbffb889da
test_findscu_encoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
89
diff
changeset
|
3322 for name in ENCODINGS: |
dbcbffb889da
test_findscu_encoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
89
diff
changeset
|
3323 DropOrthanc(_REMOTE) |
dbcbffb889da
test_findscu_encoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
89
diff
changeset
|
3324 UploadInstance(_REMOTE, 'Encodings/Lena-%s.dcm' % ENCODINGS[name][1]) |
dbcbffb889da
test_findscu_encoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
89
diff
changeset
|
3325 |
dbcbffb889da
test_findscu_encoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
89
diff
changeset
|
3326 i = CallFindScu([ '-k', '0008,0052=STUDY', |
dbcbffb889da
test_findscu_encoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
89
diff
changeset
|
3327 '-k', 'PatientID', |
dbcbffb889da
test_findscu_encoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
89
diff
changeset
|
3328 '-k', 'SpecificCharacterSet', |
dbcbffb889da
test_findscu_encoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
89
diff
changeset
|
3329 '-k', 'PatientName' ]) |
dbcbffb889da
test_findscu_encoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
89
diff
changeset
|
3330 i = i.decode(ENCODINGS[master][1]) |
dbcbffb889da
test_findscu_encoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
89
diff
changeset
|
3331 |
dbcbffb889da
test_findscu_encoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
89
diff
changeset
|
3332 characterSet = re.findall('\(0008,0005\).*?\[(.*?)\]', i) |
dbcbffb889da
test_findscu_encoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
89
diff
changeset
|
3333 self.assertEqual(1, len(characterSet)) |
dbcbffb889da
test_findscu_encoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
89
diff
changeset
|
3334 self.assertEqual(ENCODINGS[master][0], characterSet[0].strip()) |
dbcbffb889da
test_findscu_encoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
89
diff
changeset
|
3335 |
dbcbffb889da
test_findscu_encoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
89
diff
changeset
|
3336 patientId = re.findall('\(0010,0020\).*?\[(.*?)\]', i) |
dbcbffb889da
test_findscu_encoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
89
diff
changeset
|
3337 self.assertEqual(1, len(patientId)) |
dbcbffb889da
test_findscu_encoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
89
diff
changeset
|
3338 self.assertEqual(ENCODINGS[name][1], patientId[0].strip()) |
dbcbffb889da
test_findscu_encoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
89
diff
changeset
|
3339 |
dbcbffb889da
test_findscu_encoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
89
diff
changeset
|
3340 patientName = re.findall('\(0010,0010\).*?\[(.*?)\]', i) |
dbcbffb889da
test_findscu_encoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
89
diff
changeset
|
3341 self.assertEqual(1, len(patientName)) |
dbcbffb889da
test_findscu_encoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
89
diff
changeset
|
3342 |
dbcbffb889da
test_findscu_encoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
89
diff
changeset
|
3343 tmp = ENCODINGS[name][1] |
dbcbffb889da
test_findscu_encoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
89
diff
changeset
|
3344 expected = TEST.encode(tmp, 'ignore').decode(tmp) |
dbcbffb889da
test_findscu_encoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
89
diff
changeset
|
3345 tmp = ENCODINGS[master][1] |
dbcbffb889da
test_findscu_encoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
89
diff
changeset
|
3346 expected = expected.encode(tmp, 'ignore').decode(tmp) |
dbcbffb889da
test_findscu_encoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
89
diff
changeset
|
3347 |
dbcbffb889da
test_findscu_encoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
89
diff
changeset
|
3348 self.assertEqual(expected, patientName[0].strip()) |
dbcbffb889da
test_findscu_encoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
89
diff
changeset
|
3349 |
dbcbffb889da
test_findscu_encoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
89
diff
changeset
|
3350 |
dbcbffb889da
test_findscu_encoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
89
diff
changeset
|
3351 a = DoPost(_REMOTE, '/tools/find', { 'Expand' : True, |
dbcbffb889da
test_findscu_encoding
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diff
changeset
|
3352 'Level' : 'Study', |
dbcbffb889da
test_findscu_encoding
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parents:
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diff
changeset
|
3353 'Query' : { }}) |
dbcbffb889da
test_findscu_encoding
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parents:
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diff
changeset
|
3354 self.assertEqual(1, len(a)) |
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parents:
89
diff
changeset
|
3355 |
dbcbffb889da
test_findscu_encoding
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parents:
89
diff
changeset
|
3356 tmp = ENCODINGS[name][1] |
dbcbffb889da
test_findscu_encoding
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parents:
89
diff
changeset
|
3357 self.assertEqual(TEST.encode(tmp, 'ignore').decode(tmp), a[0]["PatientMainDicomTags"]["PatientName"]) |
96
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test reconstruction of tags
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diff
changeset
|
3358 |
272d1229cb49
test reconstruction of tags
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parents:
95
diff
changeset
|
3359 |
272d1229cb49
test reconstruction of tags
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parents:
95
diff
changeset
|
3360 def test_reconstruct(self): |
272d1229cb49
test reconstruction of tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
95
diff
changeset
|
3361 def CompareMainDicomTag(expected, instance, level, tag): |
272d1229cb49
test reconstruction of tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
95
diff
changeset
|
3362 self.assertEqual(expected, DoGet(_REMOTE, '/instances/%s/%s' % (instance, level))['MainDicomTags'][tag].strip()) |
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test reconstruction of tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
95
diff
changeset
|
3363 |
272d1229cb49
test reconstruction of tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
95
diff
changeset
|
3364 a = UploadInstance(_REMOTE, 'DummyCT.dcm')['ID'] |
272d1229cb49
test reconstruction of tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
95
diff
changeset
|
3365 |
272d1229cb49
test reconstruction of tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
95
diff
changeset
|
3366 studies = DoGet(_REMOTE, '/studies/') |
272d1229cb49
test reconstruction of tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
95
diff
changeset
|
3367 self.assertEqual(1, len(DoGet(_REMOTE, '/patients/'))) |
272d1229cb49
test reconstruction of tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
95
diff
changeset
|
3368 self.assertEqual(1, len(studies)) |
272d1229cb49
test reconstruction of tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
95
diff
changeset
|
3369 self.assertEqual(1, len(DoGet(_REMOTE, '/series/'))) |
272d1229cb49
test reconstruction of tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
95
diff
changeset
|
3370 self.assertEqual(1, len(DoGet(_REMOTE, '/instances/'))) |
272d1229cb49
test reconstruction of tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
95
diff
changeset
|
3371 |
272d1229cb49
test reconstruction of tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
95
diff
changeset
|
3372 modified = DoPost(_REMOTE, '/studies/%s/modify' % studies[0], { |
272d1229cb49
test reconstruction of tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
95
diff
changeset
|
3373 "Replace" : { |
272d1229cb49
test reconstruction of tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
95
diff
changeset
|
3374 "StudyDescription" : "hello", |
272d1229cb49
test reconstruction of tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
95
diff
changeset
|
3375 "SeriesDescription" : "world", |
272d1229cb49
test reconstruction of tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
95
diff
changeset
|
3376 "SOPClassUID" : "test", |
272d1229cb49
test reconstruction of tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
95
diff
changeset
|
3377 "SOPInstanceUID" : "myid", |
272d1229cb49
test reconstruction of tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
95
diff
changeset
|
3378 }, |
119 | 3379 "Keep" : [ "StudyInstanceUID", "SeriesInstanceUID" ], |
3380 "Force" : True | |
96
272d1229cb49
test reconstruction of tags
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parents:
95
diff
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|
3381 }) |
272d1229cb49
test reconstruction of tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
95
diff
changeset
|
3382 |
272d1229cb49
test reconstruction of tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
95
diff
changeset
|
3383 instances = DoGet(_REMOTE, '/instances/') |
272d1229cb49
test reconstruction of tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
95
diff
changeset
|
3384 self.assertEqual(1, len(DoGet(_REMOTE, '/patients/'))) |
272d1229cb49
test reconstruction of tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
95
diff
changeset
|
3385 self.assertEqual(1, len(DoGet(_REMOTE, '/studies/'))) |
272d1229cb49
test reconstruction of tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
95
diff
changeset
|
3386 self.assertEqual(1, len(DoGet(_REMOTE, '/series/'))) |
272d1229cb49
test reconstruction of tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
95
diff
changeset
|
3387 self.assertEqual(2, len(instances)) |
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test reconstruction of tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
95
diff
changeset
|
3388 |
272d1229cb49
test reconstruction of tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
95
diff
changeset
|
3389 b = instances[0] if instances[1] == a else instances[1] |
272d1229cb49
test reconstruction of tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
95
diff
changeset
|
3390 |
272d1229cb49
test reconstruction of tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
95
diff
changeset
|
3391 CompareMainDicomTag('Knee (R)', a, 'study', 'StudyDescription') |
272d1229cb49
test reconstruction of tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
95
diff
changeset
|
3392 CompareMainDicomTag('AX. FSE PD', a, 'series', 'SeriesDescription') |
272d1229cb49
test reconstruction of tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
95
diff
changeset
|
3393 CompareMainDicomTag('1.2.840.113619.2.176.2025.1499492.7040.1171286242.109', a, '', 'SOPInstanceUID') |
272d1229cb49
test reconstruction of tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
95
diff
changeset
|
3394 CompareMainDicomTag('myid', b, '', 'SOPInstanceUID') |
272d1229cb49
test reconstruction of tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
95
diff
changeset
|
3395 self.assertEqual('1.2.840.10008.5.1.4.1.1.4', DoGet(_REMOTE, '/instances/%s/metadata/SopClassUid' % a).strip()) |
272d1229cb49
test reconstruction of tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
95
diff
changeset
|
3396 self.assertEqual('test', DoGet(_REMOTE, '/instances/%s/metadata/SopClassUid' % b).strip()) |
272d1229cb49
test reconstruction of tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
95
diff
changeset
|
3397 |
272d1229cb49
test reconstruction of tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
95
diff
changeset
|
3398 DoPost(_REMOTE, '/instances/%s/reconstruct' % b, {}) |
272d1229cb49
test reconstruction of tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
95
diff
changeset
|
3399 |
272d1229cb49
test reconstruction of tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
95
diff
changeset
|
3400 CompareMainDicomTag('hello', a, 'study', 'StudyDescription') |
272d1229cb49
test reconstruction of tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
95
diff
changeset
|
3401 CompareMainDicomTag('world', a, 'series', 'SeriesDescription') |
272d1229cb49
test reconstruction of tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
95
diff
changeset
|
3402 CompareMainDicomTag('1.2.840.113619.2.176.2025.1499492.7040.1171286242.109', a, '', 'SOPInstanceUID') |
102 | 3403 |
104 | 3404 def test_httpClient_lua(self): |
3405 with open(GetDatabasePath('Lua/HttpClient.lua'), 'r') as f: | |
102 | 3406 result = DoPost(_REMOTE, '/tools/execute-script', f.read(), 'application/lua') |
3407 | |
3408 self.assertIn('OK', result) | |
107
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104
diff
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|
3409 |
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test_bitbucket_issue_44
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parents:
104
diff
changeset
|
3410 |
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parents:
104
diff
changeset
|
3411 def test_bitbucket_issue_44(self): |
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test_bitbucket_issue_44
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104
diff
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|
3412 # https://bitbucket.org/sjodogne/orthanc/issues/44/bad-interpretation-of-photometric |
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test_bitbucket_issue_44
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104
diff
changeset
|
3413 UploadInstance(_REMOTE, 'Issue44/Monochrome1.dcm') |
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|
3414 UploadInstance(_REMOTE, 'Issue44/Monochrome2.dcm') |
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test_bitbucket_issue_44
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parents:
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diff
changeset
|
3415 |
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test_bitbucket_issue_44
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104
diff
changeset
|
3416 # dcmcjpeg +ua +eb Monochrome1.dcm Monochrome1-Jpeg.dcm |
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test_bitbucket_issue_44
Sebastien Jodogne <s.jodogne@gmail.com>
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104
diff
changeset
|
3417 UploadInstance(_REMOTE, 'Issue44/Monochrome1-Jpeg.dcm') |
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test_bitbucket_issue_44
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parents:
104
diff
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|
3418 |
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104
diff
changeset
|
3419 # dcmcjpeg +ua Monochrome1.dcm Monochrome1-JpegLS.dcm |
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diff
changeset
|
3420 UploadInstance(_REMOTE, 'Issue44/Monochrome1-JpegLS.dcm') |
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test_bitbucket_issue_44
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diff
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|
3421 |
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test_bitbucket_issue_44
Sebastien Jodogne <s.jodogne@gmail.com>
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104
diff
changeset
|
3422 monochrome1 = 'bcdd600a-a6a9c522-5f0a6e84-8657c9f3-b76e59b7' |
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test_bitbucket_issue_44
Sebastien Jodogne <s.jodogne@gmail.com>
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104
diff
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|
3423 monochrome1_jpeg = '9df82121-208a2da8-0038674a-3d7a773b-b7008cd2' |
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test_bitbucket_issue_44
Sebastien Jodogne <s.jodogne@gmail.com>
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diff
changeset
|
3424 monochrome1_jpegls = '0486d1a2-9165573f-b1976b20-e927b016-6b8d67ab' |
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test_bitbucket_issue_44
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
104
diff
changeset
|
3425 monochrome2 = 'f00947b7-f61f7164-c93414d1-c6fbda6a-9e92ed20' |
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test_bitbucket_issue_44
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
104
diff
changeset
|
3426 |
fddb35f7289d
test_bitbucket_issue_44
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
104
diff
changeset
|
3427 for i in [ monochrome1, monochrome1_jpeg, monochrome1_jpegls ]: |
fddb35f7289d
test_bitbucket_issue_44
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
104
diff
changeset
|
3428 im = GetImage(_REMOTE, '/instances/%s/preview' % i) |
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test_bitbucket_issue_44
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
104
diff
changeset
|
3429 self.assertEqual("L", im.mode) |
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test_bitbucket_issue_44
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parents:
104
diff
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|
3430 self.assertEqual(2010, im.size[0]) |
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test_bitbucket_issue_44
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parents:
104
diff
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|
3431 self.assertEqual(2446, im.size[1]) |
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test_bitbucket_issue_44
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parents:
104
diff
changeset
|
3432 |
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test_bitbucket_issue_44
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parents:
104
diff
changeset
|
3433 # This is the chest image, with MONOCHROME1. Raw background is |
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test_bitbucket_issue_44
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104
diff
changeset
|
3434 # white (255), should be rendered as black (0) => invert |
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test_bitbucket_issue_44
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parents:
104
diff
changeset
|
3435 if i == monochrome1_jpeg: |
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test_bitbucket_issue_44
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parents:
104
diff
changeset
|
3436 # Add some tolerance because of JPEG destructive compression |
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test_bitbucket_issue_44
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parents:
104
diff
changeset
|
3437 self.assertGreater(10, im.getpixel((0,0))) |
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parents:
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diff
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|
3438 else: |
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diff
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|
3439 self.assertEqual(0, im.getpixel((0,0))) |
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parents:
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diff
changeset
|
3440 |
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104
diff
changeset
|
3441 im = GetImage(_REMOTE, '/instances/%s/preview' % monochrome2) |
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diff
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|
3442 self.assertEqual("L", im.mode) |
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diff
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|
3443 self.assertEqual(1572, im.size[0]) |
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|
3444 self.assertEqual(2010, im.size[1]) |
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diff
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|
3445 |
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diff
changeset
|
3446 # This is the key image, with MONOCHROME2. Raw background is |
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diff
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|
3447 # white (255), should be rendered as white (255) |
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diff
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|
3448 self.assertEqual(255, im.getpixel((0,0))) |
111
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diff
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|
3449 |
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diff
changeset
|
3450 |
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test_bitbucket_issue_42
Sebastien Jodogne <s.jodogne@gmail.com>
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diff
changeset
|
3451 def test_bitbucket_issue_42(self): |
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|
3452 # https://bitbucket.org/sjodogne/orthanc/issues/42/fails-to-modify-a-dicom-video-file |
123 | 3453 # This test fails on DCMTK 3.6.0, but succeeds in DCMTK 3.6.1 snapshots and DCMTK 3.6.2 |
111
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diff
changeset
|
3454 UploadInstance(_REMOTE, 'Issue42.dcm')['ID'] |
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|
3455 modified = DoPost(_REMOTE, |
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diff
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|
3456 '/patients/da128605-e040d0c4-310615d2-3475da63-df2d1ef4/modify', |
119 | 3457 '{"Replace":{"PatientID":"Hello","PatientName":"Sample patient name"},"Force":true}', |
111
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|
3458 'application/json') |
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diff
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|
3459 self.assertTrue('PatientID' in modified) |
113
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diff
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|
3460 |
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diff
changeset
|
3461 |
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diff
changeset
|
3462 def test_rest_find_limit(self): |
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diff
changeset
|
3463 # Check the "Since" and "Limit" parameters in URI "/tools/find" |
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diff
changeset
|
3464 # Related to issue 53: https://bitbucket.org/sjodogne/orthanc/issues/53 |
111
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3465 |
113
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diff
changeset
|
3466 # Upload 6 instances |
3e5934363e76
test_rest_find_limitµ
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
112
diff
changeset
|
3467 brainix = [] |
3e5934363e76
test_rest_find_limitµ
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
112
diff
changeset
|
3468 knee = [] |
3e5934363e76
test_rest_find_limitµ
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
112
diff
changeset
|
3469 for i in range(2): |
3e5934363e76
test_rest_find_limitµ
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
112
diff
changeset
|
3470 brainix.append(UploadInstance(_REMOTE, 'Brainix/Flair/IM-0001-000%d.dcm' % (i + 1)) ['ID']) |
3e5934363e76
test_rest_find_limitµ
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
112
diff
changeset
|
3471 brainix.append(UploadInstance(_REMOTE, 'Brainix/Epi/IM-0001-000%d.dcm' % (i + 1)) ['ID']) |
3e5934363e76
test_rest_find_limitµ
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
112
diff
changeset
|
3472 knee.append(UploadInstance(_REMOTE, 'Knee/T1/IM-0001-000%d.dcm' % (i + 1)) ['ID']) |
3e5934363e76
test_rest_find_limitµ
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
112
diff
changeset
|
3473 |
3e5934363e76
test_rest_find_limitµ
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
112
diff
changeset
|
3474 # Check using BRAINIX |
3e5934363e76
test_rest_find_limitµ
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
112
diff
changeset
|
3475 a = DoPost(_REMOTE, '/tools/find', { 'Level' : 'Instance', |
3e5934363e76
test_rest_find_limitµ
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
112
diff
changeset
|
3476 'Query' : { 'PatientName' : 'B*' }, |
3e5934363e76
test_rest_find_limitµ
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
112
diff
changeset
|
3477 'Limit' : 10 }) |
3e5934363e76
test_rest_find_limitµ
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
112
diff
changeset
|
3478 self.assertEqual(4, len(a)) |
3e5934363e76
test_rest_find_limitµ
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
112
diff
changeset
|
3479 |
3e5934363e76
test_rest_find_limitµ
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
112
diff
changeset
|
3480 a = DoPost(_REMOTE, '/tools/find', { 'Level' : 'Instance', |
3e5934363e76
test_rest_find_limitµ
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
112
diff
changeset
|
3481 'Query' : { 'PatientName' : 'B*' }, |
3e5934363e76
test_rest_find_limitµ
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
112
diff
changeset
|
3482 'Limit' : 4 }) |
3e5934363e76
test_rest_find_limitµ
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
112
diff
changeset
|
3483 self.assertEqual(4, len(a)) |
3e5934363e76
test_rest_find_limitµ
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
112
diff
changeset
|
3484 |
3e5934363e76
test_rest_find_limitµ
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
112
diff
changeset
|
3485 a = DoPost(_REMOTE, '/tools/find', { 'Level' : 'Instance', |
3e5934363e76
test_rest_find_limitµ
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
112
diff
changeset
|
3486 'Query' : { 'PatientName' : 'B*' }, |
3e5934363e76
test_rest_find_limitµ
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
112
diff
changeset
|
3487 'Since' : 2, |
3e5934363e76
test_rest_find_limitµ
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
112
diff
changeset
|
3488 'Limit' : 4 }) |
3e5934363e76
test_rest_find_limitµ
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
112
diff
changeset
|
3489 self.assertEqual(2, len(a)) |
3e5934363e76
test_rest_find_limitµ
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
112
diff
changeset
|
3490 |
3e5934363e76
test_rest_find_limitµ
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
112
diff
changeset
|
3491 a = DoPost(_REMOTE, '/tools/find', { 'Level' : 'Instance', |
3e5934363e76
test_rest_find_limitµ
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
112
diff
changeset
|
3492 'Query' : { 'PatientName' : 'B*' }, |
3e5934363e76
test_rest_find_limitµ
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
112
diff
changeset
|
3493 'Limit' : 3 }) |
3e5934363e76
test_rest_find_limitµ
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
112
diff
changeset
|
3494 self.assertEqual(3, len(a)) |
3e5934363e76
test_rest_find_limitµ
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
112
diff
changeset
|
3495 |
3e5934363e76
test_rest_find_limitµ
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
112
diff
changeset
|
3496 b = [] |
3e5934363e76
test_rest_find_limitµ
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
112
diff
changeset
|
3497 for i in range(4): |
3e5934363e76
test_rest_find_limitµ
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
112
diff
changeset
|
3498 a = DoPost(_REMOTE, '/tools/find', { 'Level' : 'Instance', |
3e5934363e76
test_rest_find_limitµ
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
112
diff
changeset
|
3499 'Query' : { 'PatientName' : 'B*' }, |
3e5934363e76
test_rest_find_limitµ
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
112
diff
changeset
|
3500 'Limit' : 1, |
3e5934363e76
test_rest_find_limitµ
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
112
diff
changeset
|
3501 'Since' : i }) |
3e5934363e76
test_rest_find_limitµ
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
112
diff
changeset
|
3502 self.assertEqual(1, len(a)) |
3e5934363e76
test_rest_find_limitµ
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
112
diff
changeset
|
3503 b.append(a[0]) |
3e5934363e76
test_rest_find_limitµ
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
112
diff
changeset
|
3504 |
3e5934363e76
test_rest_find_limitµ
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
112
diff
changeset
|
3505 # Check whether the two sets are equal through symmetric difference |
3e5934363e76
test_rest_find_limitµ
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
112
diff
changeset
|
3506 self.assertEqual(0, len(set(b) ^ set(brainix))) |
3e5934363e76
test_rest_find_limitµ
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
112
diff
changeset
|
3507 |
3e5934363e76
test_rest_find_limitµ
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
112
diff
changeset
|
3508 # Check using KNEE |
3e5934363e76
test_rest_find_limitµ
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
112
diff
changeset
|
3509 a = DoPost(_REMOTE, '/tools/find', { 'Level' : 'Instance', |
3e5934363e76
test_rest_find_limitµ
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
112
diff
changeset
|
3510 'Query' : { 'PatientName' : 'K*' }, |
3e5934363e76
test_rest_find_limitµ
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
112
diff
changeset
|
3511 'Limit' : 10 }) |
3e5934363e76
test_rest_find_limitµ
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
112
diff
changeset
|
3512 self.assertEqual(2, len(a)) |
3e5934363e76
test_rest_find_limitµ
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
112
diff
changeset
|
3513 |
3e5934363e76
test_rest_find_limitµ
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
112
diff
changeset
|
3514 a = DoPost(_REMOTE, '/tools/find', { 'Level' : 'Instance', |
3e5934363e76
test_rest_find_limitµ
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
112
diff
changeset
|
3515 'Query' : { 'PatientName' : 'K*' }, |
3e5934363e76
test_rest_find_limitµ
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
112
diff
changeset
|
3516 'Limit' : 2 }) |
3e5934363e76
test_rest_find_limitµ
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
112
diff
changeset
|
3517 self.assertEqual(2, len(a)) |
3e5934363e76
test_rest_find_limitµ
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
112
diff
changeset
|
3518 |
3e5934363e76
test_rest_find_limitµ
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
112
diff
changeset
|
3519 b = [] |
3e5934363e76
test_rest_find_limitµ
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
112
diff
changeset
|
3520 for i in range(2): |
3e5934363e76
test_rest_find_limitµ
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
112
diff
changeset
|
3521 a = DoPost(_REMOTE, '/tools/find', { 'Level' : 'Instance', |
3e5934363e76
test_rest_find_limitµ
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
112
diff
changeset
|
3522 'Query' : { 'PatientName' : 'K*' }, |
3e5934363e76
test_rest_find_limitµ
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
112
diff
changeset
|
3523 'Limit' : 1, |
3e5934363e76
test_rest_find_limitµ
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
112
diff
changeset
|
3524 'Since' : i }) |
3e5934363e76
test_rest_find_limitµ
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
112
diff
changeset
|
3525 self.assertEqual(1, len(a)) |
3e5934363e76
test_rest_find_limitµ
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
112
diff
changeset
|
3526 b.append(a[0]) |
3e5934363e76
test_rest_find_limitµ
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
112
diff
changeset
|
3527 |
3e5934363e76
test_rest_find_limitµ
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
112
diff
changeset
|
3528 self.assertEqual(0, len(set(b) ^ set(knee))) |
115
45ebfab035b7
test_bitbucket_issue_46
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
113
diff
changeset
|
3529 |
45ebfab035b7
test_bitbucket_issue_46
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
113
diff
changeset
|
3530 |
45ebfab035b7
test_bitbucket_issue_46
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
113
diff
changeset
|
3531 def test_bitbucket_issue_46(self): |
45ebfab035b7
test_bitbucket_issue_46
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
113
diff
changeset
|
3532 # "PHI remaining after anonymization" |
45ebfab035b7
test_bitbucket_issue_46
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
113
diff
changeset
|
3533 # https://bitbucket.org/sjodogne/orthanc/issues/46 |
45ebfab035b7
test_bitbucket_issue_46
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
113
diff
changeset
|
3534 |
45ebfab035b7
test_bitbucket_issue_46
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
113
diff
changeset
|
3535 def GetAnonymizedTags(study, version): |
45ebfab035b7
test_bitbucket_issue_46
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
113
diff
changeset
|
3536 anonymized = DoPost(_REMOTE, '/studies/%s/anonymize' % study, |
45ebfab035b7
test_bitbucket_issue_46
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
113
diff
changeset
|
3537 { 'DicomVersion' : version }, |
45ebfab035b7
test_bitbucket_issue_46
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
113
diff
changeset
|
3538 'application/json') ['ID'] |
45ebfab035b7
test_bitbucket_issue_46
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
113
diff
changeset
|
3539 a = DoGet(_REMOTE, '/studies/%s/instances' % anonymized) |
45ebfab035b7
test_bitbucket_issue_46
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
113
diff
changeset
|
3540 self.assertEqual(1, len(a)) |
45ebfab035b7
test_bitbucket_issue_46
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
113
diff
changeset
|
3541 |
45ebfab035b7
test_bitbucket_issue_46
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
113
diff
changeset
|
3542 instance = a[0]['ID'] |
45ebfab035b7
test_bitbucket_issue_46
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
113
diff
changeset
|
3543 |
45ebfab035b7
test_bitbucket_issue_46
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
113
diff
changeset
|
3544 return (instance, DoGet(_REMOTE, '/instances/%s/tags' % instance)) |
45ebfab035b7
test_bitbucket_issue_46
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
113
diff
changeset
|
3545 |
45ebfab035b7
test_bitbucket_issue_46
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
113
diff
changeset
|
3546 UploadInstance(_REMOTE, 'Issue44/Monochrome1.dcm') |
45ebfab035b7
test_bitbucket_issue_46
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
113
diff
changeset
|
3547 origStudy = '6068a14b-d4df27af-9ec22145-538772d8-74f228ff' |
45ebfab035b7
test_bitbucket_issue_46
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
113
diff
changeset
|
3548 |
45ebfab035b7
test_bitbucket_issue_46
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
113
diff
changeset
|
3549 # Add the 0032,1033 (Requesting Service) and the 0010,1060 |
45ebfab035b7
test_bitbucket_issue_46
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
113
diff
changeset
|
3550 # (Patient's Mother's Birth Name) tags |
45ebfab035b7
test_bitbucket_issue_46
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
113
diff
changeset
|
3551 newStudy = DoPost(_REMOTE, '/studies/%s/modify' % origStudy, |
45ebfab035b7
test_bitbucket_issue_46
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
113
diff
changeset
|
3552 '{"Replace":{"0010,1060":"OSIMIS","0032,1033":"MOTHER"}}', |
45ebfab035b7
test_bitbucket_issue_46
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
113
diff
changeset
|
3553 'application/json')['ID'] |
45ebfab035b7
test_bitbucket_issue_46
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
113
diff
changeset
|
3554 |
45ebfab035b7
test_bitbucket_issue_46
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
113
diff
changeset
|
3555 # Use Table E.1-1 from PS 3.15-2008 |
45ebfab035b7
test_bitbucket_issue_46
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
113
diff
changeset
|
3556 # https://raw.githubusercontent.com/jodogne/dicom-specification/master/2008/08_15pu.pdf |
45ebfab035b7
test_bitbucket_issue_46
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
113
diff
changeset
|
3557 (instance, tags) = GetAnonymizedTags(newStudy, "2008") |
45ebfab035b7
test_bitbucket_issue_46
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
113
diff
changeset
|
3558 self.assertTrue('0032,1033' in tags) |
45ebfab035b7
test_bitbucket_issue_46
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
113
diff
changeset
|
3559 self.assertTrue('0010,1060' in tags) |
45ebfab035b7
test_bitbucket_issue_46
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
113
diff
changeset
|
3560 |
45ebfab035b7
test_bitbucket_issue_46
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
113
diff
changeset
|
3561 # Use Table E.1-1 from PS 3.15-2011 (only if Orthanc >= 1.2.1) |
45ebfab035b7
test_bitbucket_issue_46
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
113
diff
changeset
|
3562 # https://raw.githubusercontent.com/jodogne/dicom-specification/master/2008/08_15pu.pdf |
45ebfab035b7
test_bitbucket_issue_46
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
113
diff
changeset
|
3563 (instance, tags) = GetAnonymizedTags(newStudy, "2017c") |
45ebfab035b7
test_bitbucket_issue_46
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
113
diff
changeset
|
3564 self.assertFalse('0032,1033' in tags) |
45ebfab035b7
test_bitbucket_issue_46
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
113
diff
changeset
|
3565 self.assertFalse('0010,1060' in tags) |
45ebfab035b7
test_bitbucket_issue_46
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
113
diff
changeset
|
3566 |
45ebfab035b7
test_bitbucket_issue_46
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
113
diff
changeset
|
3567 t = {} |
45ebfab035b7
test_bitbucket_issue_46
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
113
diff
changeset
|
3568 for (key, value) in tags.iteritems(): |
45ebfab035b7
test_bitbucket_issue_46
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
113
diff
changeset
|
3569 t[value['Name']] = value['Value'] |
45ebfab035b7
test_bitbucket_issue_46
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
113
diff
changeset
|
3570 |
45ebfab035b7
test_bitbucket_issue_46
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
113
diff
changeset
|
3571 self.assertEqual('', t['StudyDate']) # Type 1 tag => cleared |
45ebfab035b7
test_bitbucket_issue_46
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
113
diff
changeset
|
3572 self.assertEqual('', t['StudyTime']) # Type 1 tag => cleared |
45ebfab035b7
test_bitbucket_issue_46
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
113
diff
changeset
|
3573 self.assertEqual('', t['PatientSex']) # Type 1 tag => cleared |
45ebfab035b7
test_bitbucket_issue_46
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
113
diff
changeset
|
3574 self.assertFalse('SeriesDate' in t) # Type 3 tag => null |
45ebfab035b7
test_bitbucket_issue_46
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
113
diff
changeset
|
3575 self.assertFalse('SeriesTime' in t) # Type 3 tag => null |
45ebfab035b7
test_bitbucket_issue_46
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
113
diff
changeset
|
3576 |
45ebfab035b7
test_bitbucket_issue_46
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
113
diff
changeset
|
3577 with tempfile.NamedTemporaryFile(delete = True) as f: |
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|
3578 # Run "dciodvfy" on the anonymized file to be sure it is still valid |
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|
3579 f.write(DoGet(_REMOTE, '/instances/%s/file' % instance)) |
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|
3580 f.flush() |
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diff
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|
3581 subprocess.check_output([ FindExecutable('dciodvfy'), f.name ], |
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parents:
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diff
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|
3582 stderr = subprocess.STDOUT).split('\n') |
118
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diff
changeset
|
3583 |
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test_bitbucket_issue_55
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diff
changeset
|
3584 |
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test_bitbucket_issue_55
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diff
changeset
|
3585 def test_bitbucket_issue_55(self): |
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diff
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|
3586 def Run(modify, query): |
a954c535fef6
test_bitbucket_issue_55
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parents:
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diff
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|
3587 self.assertEqual(1, len(DoGet(_REMOTE, '/instances'))) |
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test_bitbucket_issue_55
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diff
changeset
|
3588 |
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test_bitbucket_issue_55
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diff
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|
3589 operation = 'modify' if modify else 'anonymize' |
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test_bitbucket_issue_55
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
117
diff
changeset
|
3590 |
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test_bitbucket_issue_55
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parents:
117
diff
changeset
|
3591 self.assertRaises(Exception, lambda: DoPost( |
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test_bitbucket_issue_55
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diff
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|
3592 _REMOTE, '/studies/%s/%s' % (study, operation), query)) |
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test_bitbucket_issue_55
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diff
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|
3593 self.assertEqual(1, len(DoGet(_REMOTE, '/instances'))) |
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test_bitbucket_issue_55
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parents:
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diff
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|
3594 |
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test_bitbucket_issue_55
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117
diff
changeset
|
3595 query["Force"] = True |
a954c535fef6
test_bitbucket_issue_55
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parents:
117
diff
changeset
|
3596 a = DoPost(_REMOTE, '/studies/%s/%s' % (study, operation), query)['Path'] |
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test_bitbucket_issue_55
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diff
changeset
|
3597 self.assertEqual(2, len(DoGet(_REMOTE, '/instances'))) |
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test_bitbucket_issue_55
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diff
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|
3598 DoDelete(_REMOTE, a) |
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diff
changeset
|
3599 |
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test_bitbucket_issue_55
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diff
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|
3600 self.assertEqual(1, len(DoGet(_REMOTE, '/instances'))) |
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test_bitbucket_issue_55
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
changeset
|
3601 |
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test_bitbucket_issue_55
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parents:
117
diff
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|
3602 UploadInstance(_REMOTE, 'DummyCT.dcm') |
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test_bitbucket_issue_55
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diff
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|
3603 study = 'b9c08539-26f93bde-c81ab0d7-bffaf2cb-a4d0bdd0' |
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test_bitbucket_issue_55
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
117
diff
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|
3604 |
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diff
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|
3605 Run(True, { "Replace" : { "StudyInstanceUID" : "world" } }) |
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test_bitbucket_issue_55
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parents:
117
diff
changeset
|
3606 Run(True, { "Replace" : { "SeriesInstanceUID" : "world" } }) |
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test_bitbucket_issue_55
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parents:
117
diff
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|
3607 Run(True, { "Replace" : { "SOPInstanceUID" : "world" } }) |
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test_bitbucket_issue_55
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parents:
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diff
changeset
|
3608 |
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test_bitbucket_issue_55
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diff
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|
3609 Run(False, { "Keep" : [ "StudyInstanceUID" ]}) |
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test_bitbucket_issue_55
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parents:
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diff
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|
3610 Run(False, { "Keep" : [ "SeriesInstanceUID" ]}) |
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test_bitbucket_issue_55
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parents:
117
diff
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|
3611 Run(False, { "Keep" : [ "SOPInstanceUID" ]}) |
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test_bitbucket_issue_55
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
117
diff
changeset
|
3612 |
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117
diff
changeset
|
3613 Run(False, { "Replace" : { "StudyInstanceUID" : "world" } }) |
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test_bitbucket_issue_55
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parents:
117
diff
changeset
|
3614 Run(False, { "Replace" : { "SeriesInstanceUID" : "world" } }) |
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test_bitbucket_issue_55
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parents:
117
diff
changeset
|
3615 Run(False, { "Replace" : { "SOPInstanceUID" : "world" } }) |
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test_bitbucket_issue_55
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parents:
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diff
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|
3616 |
120
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test_bitbucket_issue_56
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parents:
119
diff
changeset
|
3617 |
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test_bitbucket_issue_56
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
119
diff
changeset
|
3618 def test_bitbucket_issue_56(self): |
fce08afe6b2d
test_bitbucket_issue_56
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parents:
119
diff
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|
3619 # Case-insensitive matching over accents. This test assumes |
fce08afe6b2d
test_bitbucket_issue_56
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parents:
119
diff
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|
3620 # that the "CaseSensitivePN" configuration option of Orthanc |
fce08afe6b2d
test_bitbucket_issue_56
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
119
diff
changeset
|
3621 # is set to "false" (default value). |
fce08afe6b2d
test_bitbucket_issue_56
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
119
diff
changeset
|
3622 # https://bitbucket.org/sjodogne/orthanc/issues/56 |
fce08afe6b2d
test_bitbucket_issue_56
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
119
diff
changeset
|
3623 |
fce08afe6b2d
test_bitbucket_issue_56
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
119
diff
changeset
|
3624 def Check(name, expected, expectedSensitive): |
fce08afe6b2d
test_bitbucket_issue_56
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
119
diff
changeset
|
3625 a = CallFindScu([ '-k', '0008,0005=ISO_IR 192', # Use UTF-8 |
fce08afe6b2d
test_bitbucket_issue_56
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
119
diff
changeset
|
3626 '-k', '0008,0052=PATIENT', |
fce08afe6b2d
test_bitbucket_issue_56
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
119
diff
changeset
|
3627 '-k', 'PatientName=%s' % name ]) |
fce08afe6b2d
test_bitbucket_issue_56
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
119
diff
changeset
|
3628 patientNames = re.findall('\(0010,0010\).*?\[(.*?)\]', a) |
fce08afe6b2d
test_bitbucket_issue_56
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
119
diff
changeset
|
3629 self.assertEqual(expected, len(patientNames)) |
fce08afe6b2d
test_bitbucket_issue_56
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
119
diff
changeset
|
3630 |
fce08afe6b2d
test_bitbucket_issue_56
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
119
diff
changeset
|
3631 a = DoPost(_REMOTE, '/tools/find', { 'Level' : 'Patient', |
fce08afe6b2d
test_bitbucket_issue_56
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
119
diff
changeset
|
3632 'CaseSensitive' : False, |
fce08afe6b2d
test_bitbucket_issue_56
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
119
diff
changeset
|
3633 'Query' : { 'PatientName' : name }}) |
fce08afe6b2d
test_bitbucket_issue_56
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
119
diff
changeset
|
3634 self.assertEqual(expected, len(a)) |
fce08afe6b2d
test_bitbucket_issue_56
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
119
diff
changeset
|
3635 |
fce08afe6b2d
test_bitbucket_issue_56
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
119
diff
changeset
|
3636 a = DoPost(_REMOTE, '/tools/find', { 'Level' : 'Patient', |
fce08afe6b2d
test_bitbucket_issue_56
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
119
diff
changeset
|
3637 'CaseSensitive' : True, |
fce08afe6b2d
test_bitbucket_issue_56
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
119
diff
changeset
|
3638 'Query' : { 'PatientName' : name }}) |
fce08afe6b2d
test_bitbucket_issue_56
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
119
diff
changeset
|
3639 self.assertEqual(expectedSensitive, len(a)) |
fce08afe6b2d
test_bitbucket_issue_56
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
119
diff
changeset
|
3640 |
fce08afe6b2d
test_bitbucket_issue_56
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
119
diff
changeset
|
3641 UploadInstance(_REMOTE, 'Encodings/Lena-latin1.dcm') |
fce08afe6b2d
test_bitbucket_issue_56
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
119
diff
changeset
|
3642 |
fce08afe6b2d
test_bitbucket_issue_56
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
119
diff
changeset
|
3643 # WildcardConstraint |
fce08afe6b2d
test_bitbucket_issue_56
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
119
diff
changeset
|
3644 Check('TeSt*', 1, 0) |
fce08afe6b2d
test_bitbucket_issue_56
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
119
diff
changeset
|
3645 Check('TeSt-a*', 0, 0) |
fce08afe6b2d
test_bitbucket_issue_56
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
119
diff
changeset
|
3646 Check('TeSt-É*', 1, 0) |
fce08afe6b2d
test_bitbucket_issue_56
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
119
diff
changeset
|
3647 Check('TeSt-é*', 1, 0) |
fce08afe6b2d
test_bitbucket_issue_56
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
119
diff
changeset
|
3648 Check('Test-é*', 1, 1) |
fce08afe6b2d
test_bitbucket_issue_56
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
119
diff
changeset
|
3649 |
fce08afe6b2d
test_bitbucket_issue_56
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
119
diff
changeset
|
3650 # ListConstraint |
fce08afe6b2d
test_bitbucket_issue_56
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
119
diff
changeset
|
3651 Check('Test-éüäöò\\nope', 1, 1) |
fce08afe6b2d
test_bitbucket_issue_56
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
119
diff
changeset
|
3652 Check('Test-ÉÜÄÖÒ\\nope', 1, 0) |
fce08afe6b2d
test_bitbucket_issue_56
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
119
diff
changeset
|
3653 |
fce08afe6b2d
test_bitbucket_issue_56
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
119
diff
changeset
|
3654 # ValueConstraint |
fce08afe6b2d
test_bitbucket_issue_56
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
119
diff
changeset
|
3655 Check('Test-éüäöò', 1, 1) |
fce08afe6b2d
test_bitbucket_issue_56
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
119
diff
changeset
|
3656 Check('Test-ÉÜÄÖÒ', 1, 0) |
fce08afe6b2d
test_bitbucket_issue_56
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
119
diff
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|
3657 |
125 | 3658 |
3659 def test_gbk_alias(self): | |
3660 # https://groups.google.com/d/msg/orthanc-users/WMM8LMbjpUc/02-1f_yFCgAJ | |
3661 # This test fails on Orthanc <= 1.3.0 | |
3662 i = UploadInstance(_REMOTE, '2017-09-19-GBK-Tumashu.dcm')['ID'] | |
3663 tags = DoGet(_REMOTE, '/instances/%s/tags?simplify' % i) | |
3664 self.assertEqual(tags['PatientName'], u'徐浩凯') | |
3665 self.assertEqual(tags['InstitutionName'], u'灌云县疾病预防控制中心') | |
126 | 3666 |
3667 | |
3668 def test_long_tag(self): | |
3669 i = UploadInstance(_REMOTE, 'DummyCTWithLongTag.dcm')['ID'] | |
3670 series = 'f2635388-f01d497a-15f7c06b-ad7dba06-c4c599fe' | |
3671 | |
3672 tags = DoGet(_REMOTE, '/instances/%s/tags' % i) | |
3673 self.assertTrue('0018,1020' in tags) | |
3674 self.assertEqual('SoftwareVersions', tags['0018,1020']['Name']) | |
3675 self.assertEqual('TooLong', tags['0018,1020']['Type']) | |
3676 self.assertEqual(None, tags['0018,1020']['Value']) | |
3677 | |
3678 tags = DoGet(_REMOTE, '/instances/%s/tags?ignore-length=0018-1020' % i) | |
3679 self.assertTrue('0018,1020' in tags) | |
3680 self.assertEqual('SoftwareVersions', tags['0018,1020']['Name']) | |
3681 self.assertEqual('String', tags['0018,1020']['Type']) | |
3682 self.assertTrue(tags['0018,1020']['Value'].startswith('Lorem ipsum dolor sit amet')) | |
3683 | |
3684 tags = DoGet(_REMOTE, '/instances/%s/tags?simplify' % i) | |
3685 self.assertTrue('SoftwareVersions' in tags) | |
3686 self.assertEqual(None, tags['SoftwareVersions']) | |
3687 self.assertTrue('HeartRate' in tags) | |
3688 self.assertEqual(474, int(tags['HeartRate'])) | |
3689 | |
3690 tags = DoGet(_REMOTE, '/instances/%s/simplified-tags' % i) | |
3691 self.assertTrue('SoftwareVersions' in tags) | |
3692 self.assertEqual(None, tags['SoftwareVersions']) | |
3693 | |
3694 tags = DoGet(_REMOTE, '/instances/%s/tags?simplify&ignore-length=0018-1020' % i) | |
3695 self.assertTrue('SoftwareVersions' in tags) | |
3696 self.assertTrue(tags['SoftwareVersions'].startswith('Lorem ipsum dolor sit amet')) | |
3697 | |
3698 tags = DoGet(_REMOTE, '/instances/%s/tags?simplify&ignore-length=SoftwareVersions' % i) | |
3699 self.assertTrue('SoftwareVersions' in tags) | |
3700 self.assertTrue(tags['SoftwareVersions'].startswith('Lorem ipsum dolor sit amet')) | |
3701 | |
3702 tags = DoGet(_REMOTE, '/series/%s/instances-tags' % series) | |
3703 self.assertEqual(1, len(tags)) | |
3704 self.assertTrue(i in tags.keys()) | |
3705 self.assertTrue('0018,1020' in tags[i]) | |
3706 self.assertEqual('TooLong', tags[i]['0018,1020']['Type']) | |
3707 | |
3708 tags = DoGet(_REMOTE, '/series/%s/instances-tags?ignore-length=SoftwareVersions' % series) | |
3709 self.assertEqual(1, len(tags)) | |
3710 self.assertTrue(i in tags.keys()) | |
3711 self.assertTrue('0018,1020' in tags[i]) | |
3712 self.assertEqual('String', tags[i]['0018,1020']['Type']) | |
3713 self.assertTrue(tags[i]['0018,1020']['Value'].startswith('Lorem ipsum dolor sit amet')) | |
3714 | |
127
1eea4d3a1ba9
test_extended_media
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
126
diff
changeset
|
3715 |
1eea4d3a1ba9
test_extended_media
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
126
diff
changeset
|
3716 def test_extended_media(self): |
1eea4d3a1ba9
test_extended_media
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
126
diff
changeset
|
3717 UploadInstance(_REMOTE, 'Knee/T1/IM-0001-0001.dcm') |
1eea4d3a1ba9
test_extended_media
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
126
diff
changeset
|
3718 |
1eea4d3a1ba9
test_extended_media
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
126
diff
changeset
|
3719 z = GetArchive(_REMOTE, '/patients/%s/media?extended' % DoGet(_REMOTE, '/patients')[0]) |
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test_extended_media
Sebastien Jodogne <s.jodogne@gmail.com>
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126
diff
changeset
|
3720 self.assertEqual(2, len(z.namelist())) |
1eea4d3a1ba9
test_extended_media
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
126
diff
changeset
|
3721 self.assertTrue('IMAGES/IM0' in z.namelist()) |
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test_extended_media
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
126
diff
changeset
|
3722 self.assertTrue('DICOMDIR' in z.namelist()) |
1eea4d3a1ba9
test_extended_media
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
126
diff
changeset
|
3723 |
1eea4d3a1ba9
test_extended_media
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
126
diff
changeset
|
3724 try: |
1eea4d3a1ba9
test_extended_media
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
126
diff
changeset
|
3725 os.remove('/tmp/DICOMDIR') |
1eea4d3a1ba9
test_extended_media
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
126
diff
changeset
|
3726 except: |
1eea4d3a1ba9
test_extended_media
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
126
diff
changeset
|
3727 # The file does not exist |
1eea4d3a1ba9
test_extended_media
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
126
diff
changeset
|
3728 pass |
1eea4d3a1ba9
test_extended_media
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
126
diff
changeset
|
3729 |
1eea4d3a1ba9
test_extended_media
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
126
diff
changeset
|
3730 z.extract('DICOMDIR', '/tmp') |
1eea4d3a1ba9
test_extended_media
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
126
diff
changeset
|
3731 a = subprocess.check_output([ FindExecutable('dciodvfy'), '/tmp/DICOMDIR' ], |
1eea4d3a1ba9
test_extended_media
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
126
diff
changeset
|
3732 stderr = subprocess.STDOUT).split('\n') |
1eea4d3a1ba9
test_extended_media
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
126
diff
changeset
|
3733 self.assertEqual(5, len(a)) |
1eea4d3a1ba9
test_extended_media
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
126
diff
changeset
|
3734 self.assertTrue(a[0].startswith('Warning')) |
1eea4d3a1ba9
test_extended_media
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
126
diff
changeset
|
3735 self.assertEqual('BasicDirectory', a[1]) |
1eea4d3a1ba9
test_extended_media
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
126
diff
changeset
|
3736 self.assertTrue('not present in standard DICOM IOD' in a[2]) |
1eea4d3a1ba9
test_extended_media
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
126
diff
changeset
|
3737 self.assertTrue('not present in standard DICOM IOD' in a[3]) |
1eea4d3a1ba9
test_extended_media
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
126
diff
changeset
|
3738 self.assertEqual('', a[4]) |
1eea4d3a1ba9
test_extended_media
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
126
diff
changeset
|
3739 |
1eea4d3a1ba9
test_extended_media
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
126
diff
changeset
|
3740 a = subprocess.check_output([ FindExecutable('dcentvfy'), '/tmp/DICOMDIR' ], |
1eea4d3a1ba9
test_extended_media
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
126
diff
changeset
|
3741 stderr = subprocess.STDOUT).split('\n') |
1eea4d3a1ba9
test_extended_media
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
126
diff
changeset
|
3742 self.assertEqual(1, len(a)) |
1eea4d3a1ba9
test_extended_media
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
126
diff
changeset
|
3743 self.assertEqual('', a[0]) |
1eea4d3a1ba9
test_extended_media
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
126
diff
changeset
|
3744 |
1eea4d3a1ba9
test_extended_media
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
126
diff
changeset
|
3745 a = subprocess.check_output([ FindExecutable('dcm2xml'), '/tmp/DICOMDIR' ]) |
1eea4d3a1ba9
test_extended_media
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
126
diff
changeset
|
3746 self.assertTrue(re.search('1.3.46.670589.11.17521.5.0.3124.2008081908590448738', a) != None) |
1eea4d3a1ba9
test_extended_media
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
126
diff
changeset
|
3747 |
1eea4d3a1ba9
test_extended_media
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
126
diff
changeset
|
3748 # Check the presence of the series description (extended tag) |
1eea4d3a1ba9
test_extended_media
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
126
diff
changeset
|
3749 self.assertTrue(re.search('T1W_aTSE', a) != None) |
1eea4d3a1ba9
test_extended_media
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
126
diff
changeset
|
3750 |
1eea4d3a1ba9
test_extended_media
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
126
diff
changeset
|
3751 os.remove('/tmp/DICOMDIR') |
1eea4d3a1ba9
test_extended_media
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
126
diff
changeset
|
3752 |
1eea4d3a1ba9
test_extended_media
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
126
diff
changeset
|
3753 |
132
149144d854bb
Orthanc.test_anonymize_relationships_1/2
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
130
diff
changeset
|
3754 def test_anonymize_relationships_1(self): |
133
f0d4c4707e64
test_anonymize_relationships_3
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
132
diff
changeset
|
3755 UploadInstance(_REMOTE, 'Knee/T1/IM-0001-0001.dcm') |
f0d4c4707e64
test_anonymize_relationships_3
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
132
diff
changeset
|
3756 UploadInstance(_REMOTE, 'Knee/T1/IM-0001-0002.dcm') |
132
149144d854bb
Orthanc.test_anonymize_relationships_1/2
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
130
diff
changeset
|
3757 study = '0a9b3153-2512774b-2d9580de-1fc3dcf6-3bd83918' |
149144d854bb
Orthanc.test_anonymize_relationships_1/2
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
130
diff
changeset
|
3758 |
149144d854bb
Orthanc.test_anonymize_relationships_1/2
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
130
diff
changeset
|
3759 anonymized = DoPost(_REMOTE, '/studies/%s/anonymize' % study, |
149144d854bb
Orthanc.test_anonymize_relationships_1/2
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
130
diff
changeset
|
3760 '{}', |
149144d854bb
Orthanc.test_anonymize_relationships_1/2
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
130
diff
changeset
|
3761 'application/json')['ID'] |
149144d854bb
Orthanc.test_anonymize_relationships_1/2
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
130
diff
changeset
|
3762 |
149144d854bb
Orthanc.test_anonymize_relationships_1/2
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
130
diff
changeset
|
3763 a = DoGet(_REMOTE, '/studies/%s/instances' % study) |
149144d854bb
Orthanc.test_anonymize_relationships_1/2
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
130
diff
changeset
|
3764 self.assertEqual(2, len(a)) |
149144d854bb
Orthanc.test_anonymize_relationships_1/2
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
130
diff
changeset
|
3765 a1 = a[0]['ID'] |
149144d854bb
Orthanc.test_anonymize_relationships_1/2
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
130
diff
changeset
|
3766 a2 = a[1]['ID'] |
149144d854bb
Orthanc.test_anonymize_relationships_1/2
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
130
diff
changeset
|
3767 |
149144d854bb
Orthanc.test_anonymize_relationships_1/2
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
130
diff
changeset
|
3768 b = DoGet(_REMOTE, '/studies/%s/instances' % anonymized) |
149144d854bb
Orthanc.test_anonymize_relationships_1/2
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
130
diff
changeset
|
3769 self.assertEqual(2, len(b)) |
149144d854bb
Orthanc.test_anonymize_relationships_1/2
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
130
diff
changeset
|
3770 b1 = b[0]['ID'] |
149144d854bb
Orthanc.test_anonymize_relationships_1/2
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
130
diff
changeset
|
3771 b2 = b[1]['ID'] |
149144d854bb
Orthanc.test_anonymize_relationships_1/2
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
130
diff
changeset
|
3772 |
149144d854bb
Orthanc.test_anonymize_relationships_1/2
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
130
diff
changeset
|
3773 SEQUENCE = '/instances/%s/content/ReferencedImageSequence' |
149144d854bb
Orthanc.test_anonymize_relationships_1/2
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
130
diff
changeset
|
3774 SOP = '/instances/%s/content/ReferencedImageSequence/%d/ReferencedSOPInstanceUID' |
149144d854bb
Orthanc.test_anonymize_relationships_1/2
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
130
diff
changeset
|
3775 CLASS = '/instances/%s/content/ReferencedImageSequence/%d/ReferencedSOPClassUID' |
149144d854bb
Orthanc.test_anonymize_relationships_1/2
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
130
diff
changeset
|
3776 FRAME = '/instances/%s/content/FrameOfReferenceUID' |
149144d854bb
Orthanc.test_anonymize_relationships_1/2
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
130
diff
changeset
|
3777 |
149144d854bb
Orthanc.test_anonymize_relationships_1/2
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
130
diff
changeset
|
3778 self.assertEqual(DoGet(_REMOTE, FRAME % a1), |
149144d854bb
Orthanc.test_anonymize_relationships_1/2
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
130
diff
changeset
|
3779 DoGet(_REMOTE, FRAME % a2)) |
149144d854bb
Orthanc.test_anonymize_relationships_1/2
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
130
diff
changeset
|
3780 self.assertEqual(DoGet(_REMOTE, FRAME % b1), |
149144d854bb
Orthanc.test_anonymize_relationships_1/2
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
130
diff
changeset
|
3781 DoGet(_REMOTE, FRAME % b2)) |
149144d854bb
Orthanc.test_anonymize_relationships_1/2
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
130
diff
changeset
|
3782 self.assertNotEqual(DoGet(_REMOTE, FRAME % a1), |
149144d854bb
Orthanc.test_anonymize_relationships_1/2
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
130
diff
changeset
|
3783 DoGet(_REMOTE, FRAME % b1)) |
149144d854bb
Orthanc.test_anonymize_relationships_1/2
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
130
diff
changeset
|
3784 self.assertNotEqual(DoGet(_REMOTE, FRAME % a2), |
149144d854bb
Orthanc.test_anonymize_relationships_1/2
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
130
diff
changeset
|
3785 DoGet(_REMOTE, FRAME % b2)) |
149144d854bb
Orthanc.test_anonymize_relationships_1/2
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
130
diff
changeset
|
3786 |
149144d854bb
Orthanc.test_anonymize_relationships_1/2
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
130
diff
changeset
|
3787 self.assertEqual(3, len(DoGet(_REMOTE, SEQUENCE % a1))) |
149144d854bb
Orthanc.test_anonymize_relationships_1/2
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
130
diff
changeset
|
3788 self.assertEqual(3, len(DoGet(_REMOTE, SEQUENCE % a2))) |
149144d854bb
Orthanc.test_anonymize_relationships_1/2
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
130
diff
changeset
|
3789 self.assertEqual(3, len(DoGet(_REMOTE, SEQUENCE % b1))) |
149144d854bb
Orthanc.test_anonymize_relationships_1/2
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
130
diff
changeset
|
3790 self.assertEqual(3, len(DoGet(_REMOTE, SEQUENCE % b2))) |
149144d854bb
Orthanc.test_anonymize_relationships_1/2
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
130
diff
changeset
|
3791 |
149144d854bb
Orthanc.test_anonymize_relationships_1/2
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
130
diff
changeset
|
3792 for i in range(3): |
149144d854bb
Orthanc.test_anonymize_relationships_1/2
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
130
diff
changeset
|
3793 self.assertEqual(DoGet(_REMOTE, SOP % (a1, i)), |
149144d854bb
Orthanc.test_anonymize_relationships_1/2
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
130
diff
changeset
|
3794 DoGet(_REMOTE, SOP % (a2, i))) |
149144d854bb
Orthanc.test_anonymize_relationships_1/2
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
130
diff
changeset
|
3795 self.assertEqual(DoGet(_REMOTE, SOP % (b1, i)), |
149144d854bb
Orthanc.test_anonymize_relationships_1/2
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
130
diff
changeset
|
3796 DoGet(_REMOTE, SOP % (b2, i))) |
149144d854bb
Orthanc.test_anonymize_relationships_1/2
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
130
diff
changeset
|
3797 self.assertNotEqual(DoGet(_REMOTE, SOP % (a1, i)), |
149144d854bb
Orthanc.test_anonymize_relationships_1/2
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
130
diff
changeset
|
3798 DoGet(_REMOTE, SOP % (b1, i))) |
149144d854bb
Orthanc.test_anonymize_relationships_1/2
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
130
diff
changeset
|
3799 self.assertNotEqual(DoGet(_REMOTE, SOP % (a2, i)), |
149144d854bb
Orthanc.test_anonymize_relationships_1/2
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
130
diff
changeset
|
3800 DoGet(_REMOTE, SOP % (b2, i))) |
149144d854bb
Orthanc.test_anonymize_relationships_1/2
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
130
diff
changeset
|
3801 self.assertEqual(DoGet(_REMOTE, CLASS % (a1, i)), |
149144d854bb
Orthanc.test_anonymize_relationships_1/2
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
130
diff
changeset
|
3802 DoGet(_REMOTE, CLASS % (b1, i))) |
149144d854bb
Orthanc.test_anonymize_relationships_1/2
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
130
diff
changeset
|
3803 self.assertEqual(DoGet(_REMOTE, CLASS % (a2, i)), |
149144d854bb
Orthanc.test_anonymize_relationships_1/2
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
130
diff
changeset
|
3804 DoGet(_REMOTE, CLASS % (b2, i))) |
149144d854bb
Orthanc.test_anonymize_relationships_1/2
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
130
diff
changeset
|
3805 |
149144d854bb
Orthanc.test_anonymize_relationships_1/2
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
130
diff
changeset
|
3806 |
149144d854bb
Orthanc.test_anonymize_relationships_1/2
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
130
diff
changeset
|
3807 def test_anonymize_relationships_2(self): |
133
f0d4c4707e64
test_anonymize_relationships_3
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
132
diff
changeset
|
3808 UploadInstance(_REMOTE, 'Comunix/Ct/IM-0001-0001.dcm') |
f0d4c4707e64
test_anonymize_relationships_3
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
132
diff
changeset
|
3809 UploadInstance(_REMOTE, 'Comunix/Ct/IM-0001-0002.dcm') |
132
149144d854bb
Orthanc.test_anonymize_relationships_1/2
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
130
diff
changeset
|
3810 study = '6c65289b-db2fcb71-7eaf73f4-8e12470c-a4d6d7cf' |
149144d854bb
Orthanc.test_anonymize_relationships_1/2
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
130
diff
changeset
|
3811 |
149144d854bb
Orthanc.test_anonymize_relationships_1/2
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
130
diff
changeset
|
3812 anonymized = DoPost(_REMOTE, '/studies/%s/anonymize' % study, |
149144d854bb
Orthanc.test_anonymize_relationships_1/2
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
130
diff
changeset
|
3813 '{}', |
149144d854bb
Orthanc.test_anonymize_relationships_1/2
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
130
diff
changeset
|
3814 'application/json')['ID'] |
149144d854bb
Orthanc.test_anonymize_relationships_1/2
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
130
diff
changeset
|
3815 |
149144d854bb
Orthanc.test_anonymize_relationships_1/2
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
130
diff
changeset
|
3816 a = DoGet(_REMOTE, '/studies/%s/instances' % study) |
149144d854bb
Orthanc.test_anonymize_relationships_1/2
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
130
diff
changeset
|
3817 self.assertEqual(2, len(a)) |
149144d854bb
Orthanc.test_anonymize_relationships_1/2
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
130
diff
changeset
|
3818 a1 = a[0]['ID'] |
149144d854bb
Orthanc.test_anonymize_relationships_1/2
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
130
diff
changeset
|
3819 a2 = a[1]['ID'] |
149144d854bb
Orthanc.test_anonymize_relationships_1/2
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
130
diff
changeset
|
3820 |
149144d854bb
Orthanc.test_anonymize_relationships_1/2
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
130
diff
changeset
|
3821 b = DoGet(_REMOTE, '/studies/%s/instances' % anonymized) |
149144d854bb
Orthanc.test_anonymize_relationships_1/2
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
130
diff
changeset
|
3822 self.assertEqual(2, len(b)) |
149144d854bb
Orthanc.test_anonymize_relationships_1/2
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
130
diff
changeset
|
3823 b1 = b[0]['ID'] |
149144d854bb
Orthanc.test_anonymize_relationships_1/2
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
130
diff
changeset
|
3824 b2 = b[1]['ID'] |
149144d854bb
Orthanc.test_anonymize_relationships_1/2
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
130
diff
changeset
|
3825 |
149144d854bb
Orthanc.test_anonymize_relationships_1/2
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
130
diff
changeset
|
3826 SEQUENCE = '/instances/%s/content/SourceImageSequence' |
149144d854bb
Orthanc.test_anonymize_relationships_1/2
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
130
diff
changeset
|
3827 SOP = '/instances/%s/content/SourceImageSequence/%d/ReferencedSOPInstanceUID' |
149144d854bb
Orthanc.test_anonymize_relationships_1/2
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
130
diff
changeset
|
3828 CLASS = '/instances/%s/content/SourceImageSequence/%d/ReferencedSOPClassUID' |
149144d854bb
Orthanc.test_anonymize_relationships_1/2
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
130
diff
changeset
|
3829 |
149144d854bb
Orthanc.test_anonymize_relationships_1/2
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
130
diff
changeset
|
3830 self.assertEqual(1, len(DoGet(_REMOTE, SEQUENCE % a1))) |
149144d854bb
Orthanc.test_anonymize_relationships_1/2
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
130
diff
changeset
|
3831 self.assertEqual(1, len(DoGet(_REMOTE, SEQUENCE % a2))) |
149144d854bb
Orthanc.test_anonymize_relationships_1/2
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
130
diff
changeset
|
3832 self.assertEqual(1, len(DoGet(_REMOTE, SEQUENCE % b1))) |
149144d854bb
Orthanc.test_anonymize_relationships_1/2
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
130
diff
changeset
|
3833 self.assertEqual(1, len(DoGet(_REMOTE, SEQUENCE % b2))) |
149144d854bb
Orthanc.test_anonymize_relationships_1/2
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
130
diff
changeset
|
3834 self.assertEqual(DoGet(_REMOTE, SOP % (a1, 0)), |
149144d854bb
Orthanc.test_anonymize_relationships_1/2
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
130
diff
changeset
|
3835 DoGet(_REMOTE, SOP % (a2, 0))) |
149144d854bb
Orthanc.test_anonymize_relationships_1/2
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
130
diff
changeset
|
3836 self.assertEqual(DoGet(_REMOTE, SOP % (b1, 0)), |
149144d854bb
Orthanc.test_anonymize_relationships_1/2
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
130
diff
changeset
|
3837 DoGet(_REMOTE, SOP % (b2, 0))) |
149144d854bb
Orthanc.test_anonymize_relationships_1/2
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
130
diff
changeset
|
3838 self.assertNotEqual(DoGet(_REMOTE, SOP % (a1, 0)), |
149144d854bb
Orthanc.test_anonymize_relationships_1/2
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
130
diff
changeset
|
3839 DoGet(_REMOTE, SOP % (b1, 0))) |
149144d854bb
Orthanc.test_anonymize_relationships_1/2
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
130
diff
changeset
|
3840 self.assertNotEqual(DoGet(_REMOTE, SOP % (a2, 0)), |
149144d854bb
Orthanc.test_anonymize_relationships_1/2
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
130
diff
changeset
|
3841 DoGet(_REMOTE, SOP % (b2, 0))) |
149144d854bb
Orthanc.test_anonymize_relationships_1/2
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
130
diff
changeset
|
3842 self.assertEqual(DoGet(_REMOTE, CLASS % (a1, 0)), |
149144d854bb
Orthanc.test_anonymize_relationships_1/2
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
130
diff
changeset
|
3843 DoGet(_REMOTE, CLASS % (b1, 0))) |
149144d854bb
Orthanc.test_anonymize_relationships_1/2
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
130
diff
changeset
|
3844 self.assertEqual(DoGet(_REMOTE, CLASS % (a2, 0)), |
149144d854bb
Orthanc.test_anonymize_relationships_1/2
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
130
diff
changeset
|
3845 DoGet(_REMOTE, CLASS % (b2, 0))) |
133
f0d4c4707e64
test_anonymize_relationships_3
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
132
diff
changeset
|
3846 |
f0d4c4707e64
test_anonymize_relationships_3
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
132
diff
changeset
|
3847 |
f0d4c4707e64
test_anonymize_relationships_3
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
132
diff
changeset
|
3848 def test_anonymize_relationships_3(self): |
f0d4c4707e64
test_anonymize_relationships_3
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
132
diff
changeset
|
3849 sr1 = UploadInstance(_REMOTE, 'HierarchicalAnonymization/StructuredReports/IM0')['ID'] |
f0d4c4707e64
test_anonymize_relationships_3
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
132
diff
changeset
|
3850 mr1 = UploadInstance(_REMOTE, 'HierarchicalAnonymization/StructuredReports/IM631')['ID'] |
f0d4c4707e64
test_anonymize_relationships_3
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
132
diff
changeset
|
3851 study = 'ef351eb2-c1147229-062736b8-35a151e3-e32d526b' |
f0d4c4707e64
test_anonymize_relationships_3
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
132
diff
changeset
|
3852 |
f0d4c4707e64
test_anonymize_relationships_3
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
132
diff
changeset
|
3853 anonymized = DoPost(_REMOTE, '/studies/%s/anonymize' % study, |
f0d4c4707e64
test_anonymize_relationships_3
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
132
diff
changeset
|
3854 { "Keep" : [ "ContentSequence" ] }) ['ID'] |
f0d4c4707e64
test_anonymize_relationships_3
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
132
diff
changeset
|
3855 |
f0d4c4707e64
test_anonymize_relationships_3
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
132
diff
changeset
|
3856 a = DoGet(_REMOTE, '/studies/%s/instances' % anonymized) |
f0d4c4707e64
test_anonymize_relationships_3
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
132
diff
changeset
|
3857 self.assertEqual(2, len(a)) |
f0d4c4707e64
test_anonymize_relationships_3
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
132
diff
changeset
|
3858 |
f0d4c4707e64
test_anonymize_relationships_3
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
132
diff
changeset
|
3859 if DoGet(_REMOTE, '/instances/%s/content/Modality' % a[0]['ID']) == 'SR': |
f0d4c4707e64
test_anonymize_relationships_3
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
132
diff
changeset
|
3860 sr2 = a[0]['ID'] |
f0d4c4707e64
test_anonymize_relationships_3
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
132
diff
changeset
|
3861 mr2 = a[1]['ID'] |
f0d4c4707e64
test_anonymize_relationships_3
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
132
diff
changeset
|
3862 else: |
f0d4c4707e64
test_anonymize_relationships_3
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
132
diff
changeset
|
3863 sr2 = a[1]['ID'] |
f0d4c4707e64
test_anonymize_relationships_3
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
132
diff
changeset
|
3864 mr2 = a[0]['ID'] |
f0d4c4707e64
test_anonymize_relationships_3
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
132
diff
changeset
|
3865 |
f0d4c4707e64
test_anonymize_relationships_3
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
132
diff
changeset
|
3866 self.assertEqual(DoGet(_REMOTE, '/instances/%s/content/Modality' % sr1), |
f0d4c4707e64
test_anonymize_relationships_3
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
132
diff
changeset
|
3867 DoGet(_REMOTE, '/instances/%s/content/Modality' % sr2)) |
f0d4c4707e64
test_anonymize_relationships_3
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
132
diff
changeset
|
3868 self.assertEqual(DoGet(_REMOTE, '/instances/%s/content/Modality' % mr1), |
f0d4c4707e64
test_anonymize_relationships_3
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
132
diff
changeset
|
3869 DoGet(_REMOTE, '/instances/%s/content/Modality' % mr2)) |
f0d4c4707e64
test_anonymize_relationships_3
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
132
diff
changeset
|
3870 |
f0d4c4707e64
test_anonymize_relationships_3
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
132
diff
changeset
|
3871 mrUid1 = DoGet(_REMOTE, '/instances/%s' % mr1)['MainDicomTags']['SOPInstanceUID'] |
f0d4c4707e64
test_anonymize_relationships_3
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
132
diff
changeset
|
3872 mrUid2 = DoGet(_REMOTE, '/instances/%s' % mr2)['MainDicomTags']['SOPInstanceUID'] |
f0d4c4707e64
test_anonymize_relationships_3
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
132
diff
changeset
|
3873 mrSeries1 = DoGet(_REMOTE, '/instances/%s/content/SeriesInstanceUID' % mr1).strip('\x00') |
f0d4c4707e64
test_anonymize_relationships_3
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
132
diff
changeset
|
3874 mrSeries2 = DoGet(_REMOTE, '/instances/%s/content/SeriesInstanceUID' % mr2).strip('\x00') |
f0d4c4707e64
test_anonymize_relationships_3
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
132
diff
changeset
|
3875 mrStudy1 = DoGet(_REMOTE, '/instances/%s/content/StudyInstanceUID' % mr1).strip('\x00') |
f0d4c4707e64
test_anonymize_relationships_3
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
132
diff
changeset
|
3876 mrStudy2 = DoGet(_REMOTE, '/instances/%s/content/StudyInstanceUID' % mr2).strip('\x00') |
f0d4c4707e64
test_anonymize_relationships_3
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
132
diff
changeset
|
3877 |
f0d4c4707e64
test_anonymize_relationships_3
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
132
diff
changeset
|
3878 PATH1 = '/instances/%s/content/CurrentRequestedProcedureEvidenceSequence' |
f0d4c4707e64
test_anonymize_relationships_3
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
132
diff
changeset
|
3879 PATH2 = PATH1 + '/0/ReferencedSeriesSequence' |
f0d4c4707e64
test_anonymize_relationships_3
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
132
diff
changeset
|
3880 PATH3 = PATH2 + '/0/ReferencedSOPSequence' |
f0d4c4707e64
test_anonymize_relationships_3
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
132
diff
changeset
|
3881 PATH4 = PATH3 + '/0/ReferencedSOPInstanceUID' |
f0d4c4707e64
test_anonymize_relationships_3
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
132
diff
changeset
|
3882 PATH5 = PATH3 + '/0/ReferencedSOPClassUID' |
f0d4c4707e64
test_anonymize_relationships_3
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
132
diff
changeset
|
3883 |
f0d4c4707e64
test_anonymize_relationships_3
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
132
diff
changeset
|
3884 self.assertEqual(1, len(DoGet(_REMOTE, PATH1 % sr1))) |
f0d4c4707e64
test_anonymize_relationships_3
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
132
diff
changeset
|
3885 self.assertEqual(1, len(DoGet(_REMOTE, PATH2 % sr1))) |
f0d4c4707e64
test_anonymize_relationships_3
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
132
diff
changeset
|
3886 self.assertEqual(1, len(DoGet(_REMOTE, PATH3 % sr1))) |
f0d4c4707e64
test_anonymize_relationships_3
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
132
diff
changeset
|
3887 self.assertEqual(DoGet(_REMOTE, PATH4 % sr1), mrUid1) |
f0d4c4707e64
test_anonymize_relationships_3
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
132
diff
changeset
|
3888 self.assertEqual(mrSeries1, DoGet(_REMOTE, (PATH2 + '/0/SeriesInstanceUID') % sr1).strip('\x00')) |
f0d4c4707e64
test_anonymize_relationships_3
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
132
diff
changeset
|
3889 self.assertEqual(mrStudy1, DoGet(_REMOTE, (PATH1 + '/0/StudyInstanceUID') % sr1).strip('\x00')) |
f0d4c4707e64
test_anonymize_relationships_3
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
132
diff
changeset
|
3890 |
f0d4c4707e64
test_anonymize_relationships_3
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
132
diff
changeset
|
3891 self.assertEqual(1, len(DoGet(_REMOTE, PATH1 % sr2))) |
f0d4c4707e64
test_anonymize_relationships_3
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
132
diff
changeset
|
3892 self.assertEqual(1, len(DoGet(_REMOTE, PATH2 % sr2))) |
f0d4c4707e64
test_anonymize_relationships_3
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
132
diff
changeset
|
3893 self.assertEqual(1, len(DoGet(_REMOTE, PATH3 % sr2))) |
f0d4c4707e64
test_anonymize_relationships_3
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
132
diff
changeset
|
3894 self.assertEqual(DoGet(_REMOTE, PATH5 % sr1), DoGet(_REMOTE, PATH5 % sr2)) |
f0d4c4707e64
test_anonymize_relationships_3
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
132
diff
changeset
|
3895 |
f0d4c4707e64
test_anonymize_relationships_3
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
132
diff
changeset
|
3896 self.assertEqual(mrUid2, DoGet(_REMOTE, PATH4 % sr2).strip('\x00')) |
f0d4c4707e64
test_anonymize_relationships_3
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
132
diff
changeset
|
3897 self.assertEqual(mrSeries2, DoGet(_REMOTE, (PATH2 + '/0/SeriesInstanceUID') % sr2).strip('\x00')) |
f0d4c4707e64
test_anonymize_relationships_3
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
132
diff
changeset
|
3898 self.assertEqual(mrStudy2, DoGet(_REMOTE, (PATH1 + '/0/StudyInstanceUID') % sr2).strip('\x00')) |
f0d4c4707e64
test_anonymize_relationships_3
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
132
diff
changeset
|
3899 |
f0d4c4707e64
test_anonymize_relationships_3
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
132
diff
changeset
|
3900 content1 = DoGet(_REMOTE, '/instances/%s/tags?simplify' % sr1) ['ContentSequence'] |
f0d4c4707e64
test_anonymize_relationships_3
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
132
diff
changeset
|
3901 content2 = DoGet(_REMOTE, '/instances/%s/tags?simplify' % sr2) ['ContentSequence'] |
f0d4c4707e64
test_anonymize_relationships_3
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
132
diff
changeset
|
3902 self.assertEqual(str(content1), str(content2)) |
141
5de178abe4d8
test_bitbucket_issue_94
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
138
diff
changeset
|
3903 |
5de178abe4d8
test_bitbucket_issue_94
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
138
diff
changeset
|
3904 |
5de178abe4d8
test_bitbucket_issue_94
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
138
diff
changeset
|
3905 def test_bitbucket_issue_94(self): |
5de178abe4d8
test_bitbucket_issue_94
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
138
diff
changeset
|
3906 # "a simple instance modification should not modify FrameOfReferenceUID + ..." |
5de178abe4d8
test_bitbucket_issue_94
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
138
diff
changeset
|
3907 # https://bitbucket.org/sjodogne/orthanc/issues/94 |
5de178abe4d8
test_bitbucket_issue_94
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
138
diff
changeset
|
3908 i = UploadInstance(_REMOTE, 'Issue94.dcm')['ID'] |
5de178abe4d8
test_bitbucket_issue_94
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
138
diff
changeset
|
3909 |
5de178abe4d8
test_bitbucket_issue_94
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
138
diff
changeset
|
3910 source = DoGet(_REMOTE, '/instances/%s/attachments/dicom/data' % i) |
5de178abe4d8
test_bitbucket_issue_94
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
138
diff
changeset
|
3911 |
5de178abe4d8
test_bitbucket_issue_94
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
138
diff
changeset
|
3912 modified = DoPost(_REMOTE, '/instances/%s/modify' % i, |
5de178abe4d8
test_bitbucket_issue_94
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
138
diff
changeset
|
3913 { "Replace" : {"PatientID" : "toto"}, "Force": True}) |
5de178abe4d8
test_bitbucket_issue_94
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
138
diff
changeset
|
3914 |
5de178abe4d8
test_bitbucket_issue_94
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
138
diff
changeset
|
3915 anonymized = DoPost(_REMOTE, '/instances/%s/anonymize' % i) |
5de178abe4d8
test_bitbucket_issue_94
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
138
diff
changeset
|
3916 |
5de178abe4d8
test_bitbucket_issue_94
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
138
diff
changeset
|
3917 a = ExtractDicomTags(source, [ 'FrameOfReferenceUID' ]) |
5de178abe4d8
test_bitbucket_issue_94
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
138
diff
changeset
|
3918 self.assertEqual(1, len(a)) |
5de178abe4d8
test_bitbucket_issue_94
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
138
diff
changeset
|
3919 |
5de178abe4d8
test_bitbucket_issue_94
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
138
diff
changeset
|
3920 b = ExtractDicomTags(modified, [ 'FrameOfReferenceUID' ]) |
5de178abe4d8
test_bitbucket_issue_94
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
138
diff
changeset
|
3921 self.assertEqual(1, len(b)) |
5de178abe4d8
test_bitbucket_issue_94
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
138
diff
changeset
|
3922 |
5de178abe4d8
test_bitbucket_issue_94
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
138
diff
changeset
|
3923 c = ExtractDicomTags(anonymized, [ 'FrameOfReferenceUID' ]) |
5de178abe4d8
test_bitbucket_issue_94
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
138
diff
changeset
|
3924 self.assertEqual(1, len(c)) |
5de178abe4d8
test_bitbucket_issue_94
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
138
diff
changeset
|
3925 |
5de178abe4d8
test_bitbucket_issue_94
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
138
diff
changeset
|
3926 self.assertEqual(a, b) # Modified DICOM |
5de178abe4d8
test_bitbucket_issue_94
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
138
diff
changeset
|
3927 self.assertNotEqual(a, c) # Anonymized DICOM |
143
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test_metadata_origin
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3928 |
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3929 |
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3930 def test_metadata_origin(self): |
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3931 # Upload using the REST API |
144
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3932 i = UploadInstance(_REMOTE, 'Knee/T1/IM-0001-0001.dcm')['ID'] |
143
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3933 self.assertEqual('RestApi', DoGet(_REMOTE, '/instances/%s/metadata/Origin' % i)) |
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3934 self.assertEqual('', DoGet(_REMOTE, '/instances/%s/metadata/RemoteAET' % i)) |
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3935 self.assertNotEqual('', DoGet(_REMOTE, '/instances/%s/metadata/RemoteIP' % i)) |
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3936 self.assertRaises(Exception, lambda: DoGet(_REMOTE, '/instances/%s/metadata/CalledAET' % i)) |
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3937 self.assertEqual('alice', DoGet(_REMOTE, '/instances/%s/metadata/HttpUsername' % i)) |
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3938 |
144
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3939 m = DoGet(_REMOTE, '/instances/%s/metadata?expand' % i) |
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3940 self.assertEqual('RestApi', m['Origin']) |
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3941 self.assertEqual('', m['RemoteAET']) |
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3942 self.assertNotEqual('', m['RemoteIP']) |
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3943 self.assertFalse('CalledAET' in m) |
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3944 self.assertEqual('alice', m['HttpUsername']) |
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3945 |
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3946 self.assertEqual('1.2.840.10008.1.2.4.91', m['TransferSyntax']) |
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3947 self.assertEqual('1.2.840.10008.5.1.4.1.1.4', m['SopClassUid']) |
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3948 self.assertEqual('1', m['IndexInSeries']) |
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3949 self.assertTrue('ReceptionDate' in m) |
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3950 |
143
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3951 DoDelete(_REMOTE, '/instances/%s' % i) |
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3952 |
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3953 # Upload using the DICOM protocol |
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3954 subprocess.check_call([ FindExecutable('storescu'), |
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3955 _REMOTE['Server'], str(_REMOTE['DicomPort']), |
144
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3956 GetDatabasePath('Knee/T1/IM-0001-0001.dcm'), |
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3957 '-xw' ]) # Propose JPEG2000 |
143
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3958 self.assertEqual('DicomProtocol', DoGet(_REMOTE, '/instances/%s/metadata/Origin' % i)) |
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3959 self.assertEqual('STORESCU', DoGet(_REMOTE, '/instances/%s/metadata/RemoteAET' % i)) |
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3960 self.assertNotEqual('', DoGet(_REMOTE, '/instances/%s/metadata/RemoteIP' % i)) |
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3961 self.assertEqual('ANY-SCP', DoGet(_REMOTE, '/instances/%s/metadata/CalledAET' % i)) |
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3962 self.assertRaises(Exception, lambda: DoGet(_REMOTE, '/instances/%s/metadata/HttpUsername' % i)) |
144
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3963 |
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3964 m = DoGet(_REMOTE, '/instances/%s/metadata?expand' % i) |
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3965 self.assertEqual('DicomProtocol', m['Origin']) |
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3966 self.assertEqual('STORESCU', m['RemoteAET']) |
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3967 self.assertNotEqual('', m['RemoteIP']) |
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3968 self.assertEqual('ANY-SCP', m['CalledAET']) |
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3969 self.assertFalse('HttpUsername' in m) |
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3970 |
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3971 self.assertEqual('1.2.840.10008.1.2.4.91', m['TransferSyntax']) |
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3972 self.assertEqual('1.2.840.10008.5.1.4.1.1.4', m['SopClassUid']) |
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3973 self.assertEqual('1', m['IndexInSeries']) |
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3974 self.assertTrue('ReceptionDate' in m) |
147 | 3975 |
3976 | |
3977 def test_lua_deadlock(self): | |
3978 # Rana Asim Wajid (2018-07-14): "It does seem that the issue | |
3979 # is with the lua script I'm using for conversion of images to | |
3980 # JPEG2000. When the script is used with 1.4.0 the first | |
3981 # instance appears to be stored and then everything just | |
3982 # halts, ie Orthanc wont respond to anything after that." | |
3983 # https://groups.google.com/d/msg/orthanc-users/Rc-Beb42xc8/JUgdzrmCAgAJ | |
174 | 3984 InstallLuaScriptFromPath(_REMOTE, 'Lua/Jpeg2000Conversion.lua') |
147 | 3985 |
3986 subprocess.check_call([ FindExecutable('storescu'), | |
3987 _REMOTE['Server'], str(_REMOTE['DicomPort']), | |
3988 GetDatabasePath('Brainix/Flair/IM-0001-0001.dcm'), | |
3989 GetDatabasePath('Brainix/Flair/IM-0001-0002.dcm'), | |
3990 ]) | |
3991 | |
3992 instances = DoGet(_REMOTE, '/instances') | |
3993 self.assertEqual(2, len(instances)) | |
3994 | |
3995 t1 = DoGet(_REMOTE, '/instances/%s/metadata/TransferSyntax' % instances[0]) | |
3996 t2 = DoGet(_REMOTE, '/instances/%s/metadata/TransferSyntax' % instances[1]) | |
175 | 3997 self.assertEqual('1.2.840.10008.1.2.4.90', t1) # this will fail if libgdcm-tools is not installed |
147 | 3998 self.assertEqual(t1, t2); |
154
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3999 |
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4000 |
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4001 def test_find_group_length(self): |
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4002 # Orthanc <= 1.4.1 fails to answer C-FIND queries that contain |
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4003 # one of the Generic Group Length tags (*, 0x0000) |
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4004 a = UploadInstance(_REMOTE, 'Brainix/Flair/IM-0001-0001.dcm')['ID'] |
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4005 result = CallFindScu([ '-k', '0008,0052=STUDY', '-k', '0008,0000=80' ]) |
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4006 self.assertFalse('UnableToProcess' in result) |
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4007 self.assertFalse('E:' in result) |
179
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4008 |
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4009 |
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4010 def test_split(self): |
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4011 UploadInstance(_REMOTE, 'Knee/T1/IM-0001-0001.dcm') |
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4012 UploadInstance(_REMOTE, 'Knee/T2/IM-0001-0001.dcm') |
254
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4013 knee1Sop = '1.3.46.670589.11.17521.5.0.3124.2008081908590448738' |
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4014 knee2Sop = '1.3.46.670589.11.17521.5.0.3124.2008081909113806560' |
179
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4015 study = '0a9b3153-2512774b-2d9580de-1fc3dcf6-3bd83918' |
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4016 t1 = '6de73705-c4e65c1b-9d9ea1b5-cabcd8e7-f15e4285' |
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4017 t2 = 'bbf7a453-0d34251a-03663b55-46bb31b9-ffd74c59' |
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4018 |
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4019 self.assertEqual(1, len(DoGet(_REMOTE, '/studies'))) |
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4020 self.assertEqual(2, len(DoGet(_REMOTE, '/series'))) |
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4021 |
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4022 info = DoGet(_REMOTE, '/studies/%s' % study) |
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4023 self.assertTrue('ReferringPhysicianName' in info['MainDicomTags']) |
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4024 |
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4025 job = MonitorJob2(_REMOTE, lambda: DoPost |
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diff
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4026 (_REMOTE, '/studies/%s/split' % study, { |
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4027 'Series' : [ t2 ], |
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4028 'Replace' : { 'PatientName' : 'Hello' }, |
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4029 'Remove' : [ 'ReferringPhysicianName' ], |
181 | 4030 'KeepSource' : False, |
4031 'Asynchronous' : True | |
179
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4032 })) |
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4033 |
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4034 self.assertNotEqual(None, job) |
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4035 |
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4036 studies = set(DoGet(_REMOTE, '/studies')) |
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4037 self.assertEqual(2, len(studies)) |
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4038 |
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4039 series = set(DoGet(_REMOTE, '/series')) |
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4040 self.assertEqual(2, len(series)) |
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4041 self.assertTrue(t1 in series) |
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4042 |
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4043 study2 = DoGet(_REMOTE, '/jobs/%s' % job)['Content']['TargetStudy'] |
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4044 self.assertTrue(study in studies) |
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4045 self.assertTrue(study2 in studies) |
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4046 |
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4047 info = DoGet(_REMOTE, '/studies/%s' % study2) |
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4048 self.assertTrue('Hello', info['PatientMainDicomTags']['PatientName']) |
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4049 self.assertFalse('ReferringPhysicianName' in info['MainDicomTags']) |
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4050 |
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4051 sopInstanceUids = set() |
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4052 for i in DoGet(_REMOTE, '/instances?expand'): |
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4053 sopInstanceUids.add(i['MainDicomTags']['SOPInstanceUID']) |
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4054 |
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4055 self.assertTrue(knee1Sop in sopInstanceUids) |
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4056 |
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4057 # Fails if Orthanc <= 1.5.7 |
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4058 self.assertFalse(knee2Sop in sopInstanceUids) # Because "KeepSource" is False |
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4059 |
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4060 # One original instance is kept, another one is added because of the split |
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4061 self.assertEqual(2, len(sopInstanceUids)) |
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4062 |
179
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4063 |
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4064 def test_merge(self): |
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4065 UploadInstance(_REMOTE, 'Knee/T1/IM-0001-0001.dcm') |
254
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4066 UploadInstance(_REMOTE, 'Brainix/Flair/IM-0001-0001.dcm') |
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4067 kneeSop = '1.3.46.670589.11.17521.5.0.3124.2008081908590448738' |
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4068 brainixSop = '1.3.46.670589.11.0.0.11.4.2.0.8743.5.5396.2006120114314079549' |
179
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4069 knee = '0a9b3153-2512774b-2d9580de-1fc3dcf6-3bd83918' |
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4070 t1 = '6de73705-c4e65c1b-9d9ea1b5-cabcd8e7-f15e4285' |
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4071 brainix = '27f7126f-4f66fb14-03f4081b-f9341db2-53925988' |
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4072 flair = '1e2c125c-411b8e86-3f4fe68e-a7584dd3-c6da78f0' |
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4073 |
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4074 self.assertEqual(2, len(DoGet(_REMOTE, '/studies'))) |
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4075 self.assertEqual(2, len(DoGet(_REMOTE, '/series'))) |
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4076 |
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4077 job = MonitorJob2(_REMOTE, lambda: DoPost |
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4078 (_REMOTE, '/studies/%s/merge' % knee, { |
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4079 'Resources' : [ brainix ], |
181 | 4080 'KeepSource' : True, |
4081 'Synchronous' : False | |
179
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4082 })) |
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4083 |
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4084 self.assertNotEqual(None, job) |
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4085 |
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4086 studies = set(DoGet(_REMOTE, '/studies')) |
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4087 self.assertEqual(2, len(studies)) |
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4088 self.assertTrue(knee in studies) |
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4089 self.assertTrue(brainix in studies) |
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4090 |
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4091 series = set(DoGet(_REMOTE, '/studies/%s' % knee)['Series']) |
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4092 self.assertTrue(t1 in series) |
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4093 series.remove(t1) |
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4094 self.assertEqual(1, len(series)) |
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4095 |
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4096 instances = DoGet(_REMOTE, '/series/%s' % list(series)[0])['Instances'] |
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4097 self.assertEqual(1, len(instances)) |
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4098 merged = DoGet(_REMOTE, '/instances/%s/tags?simplify' % instances[0]) |
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4099 |
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4100 instances = DoGet(_REMOTE, '/series/%s' % t1)['Instances'] |
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4101 self.assertEqual(1, len(instances)) |
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4102 a = DoGet(_REMOTE, '/instances/%s/tags?simplify' % instances[0]) |
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4103 |
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4104 instances = DoGet(_REMOTE, '/series/%s' % flair)['Instances'] |
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4105 self.assertEqual(1, len(instances)) |
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4106 b = DoGet(_REMOTE, '/instances/%s/tags?simplify' % instances[0]) |
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4107 |
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4108 tags = DoGet(_REMOTE, '/studies/%s' % knee) |
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4109 |
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4110 for key in tags['PatientMainDicomTags']: |
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4111 self.assertEqual(a[key], merged[key]) |
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4112 if (key in b and key != 'PatientSex'): |
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4113 self.assertNotEqual(a[key], b[key]) |
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4114 |
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4115 for key in tags['MainDicomTags']: |
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4116 # Not in the patient/study module |
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4117 if (not key in [ 'InstitutionName', |
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4118 'RequestingPhysician', |
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4119 'RequestedProcedureDescription', ]): |
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4120 self.assertEqual(a[key], merged[key]) |
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4121 if (key in b): |
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4122 self.assertNotEqual(a[key], b[key]) |
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4123 |
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4124 sopInstanceUids = set() |
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4125 for i in DoGet(_REMOTE, '/instances?expand'): |
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4126 sopInstanceUids.add(i['MainDicomTags']['SOPInstanceUID']) |
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4127 |
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4128 self.assertTrue(kneeSop in sopInstanceUids) |
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4129 self.assertTrue(brainixSop in sopInstanceUids) |
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4130 |
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4131 # Fails if Orthanc <= 1.5.7 |
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4132 # The 2 original instances are kept, another one is added because of the merge |
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4133 self.assertEqual(3, len(sopInstanceUids)) |
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4134 |
187 | 4135 |
4136 def test_async_archive(self): | |
4137 # Testing the asynchronous generation of archives/medias (new | |
4138 # in Orthanc 1.4.3) | |
4139 UploadInstance(_REMOTE, 'Knee/T1/IM-0001-0001.dcm') | |
4140 UploadInstance(_REMOTE, 'Knee/T2/IM-0001-0001.dcm') | |
4141 | |
4142 kneeT1 = '6de73705-c4e65c1b-9d9ea1b5-cabcd8e7-f15e4285' | |
4143 kneeT2 = 'bbf7a453-0d34251a-03663b55-46bb31b9-ffd74c59' | |
4144 | |
4145 job = MonitorJob2(_REMOTE, lambda: DoPost | |
4146 (_REMOTE, '/studies/%s/archive' % kneeT1, { | |
4147 'Synchronous' : False | |
4148 })) | |
4149 | |
4150 z = GetArchive(_REMOTE, '/jobs/%s/archive' % job) | |
4151 self.assertEqual(1, len(z.namelist())) | |
4152 self.assertFalse('DICOMDIR' in z.namelist()) | |
4153 | |
4154 job2 = MonitorJob2(_REMOTE, lambda: DoPost | |
4155 (_REMOTE, '/studies/%s/media' % kneeT1, { | |
4156 'Synchronous' : False | |
4157 })) | |
4158 | |
4159 # The archive from the first job has been replaced by the | |
4160 # archive from second job (as MediaArchiveSize == 1) | |
4161 self.assertRaises(Exception, lambda: GetArchive(_REMOTE, '/jobs/%s/archive' % job)) | |
4162 | |
4163 z = GetArchive(_REMOTE, '/jobs/%s/archive' % job2) | |
4164 self.assertEqual(2, len(z.namelist())) | |
4165 self.assertTrue('DICOMDIR' in z.namelist()) | |
4166 | |
4167 job = MonitorJob2(_REMOTE, lambda: DoPost | |
4168 (_REMOTE, '/tools/create-archive', { | |
4169 'Synchronous' : False, | |
4170 'Resources' : [ kneeT1, kneeT2 ], | |
4171 })) | |
4172 | |
4173 z = GetArchive(_REMOTE, '/jobs/%s/archive' % job) | |
4174 self.assertEqual(2, len(z.namelist())) | |
4175 self.assertFalse('DICOMDIR' in z.namelist()) | |
4176 | |
4177 job = MonitorJob2(_REMOTE, lambda: DoPost | |
4178 (_REMOTE, '/tools/create-media', { | |
4179 'Synchronous' : False, | |
4180 'Resources' : [ kneeT1, kneeT2 ], | |
4181 })) | |
4182 | |
4183 z = GetArchive(_REMOTE, '/jobs/%s/archive' % job) | |
4184 self.assertEqual(3, len(z.namelist())) | |
4185 self.assertTrue('DICOMDIR' in z.namelist()) | |
188
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4186 |
187 | 4187 |
188
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4188 def test_queries_hierarchy(self): |
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4189 UploadInstance(_REMOTE, 'Knee/T1/IM-0001-0001.dcm') |
189
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4190 UploadInstance(_REMOTE, 'Brainix/Flair/IM-0001-0001.dcm') |
188
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4191 |
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4192 tags = { |
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4193 'NumberOfPatientRelatedInstances' : '', |
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4194 'NumberOfPatientRelatedSeries' : '', |
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4195 'NumberOfPatientRelatedStudies' : '', |
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4196 'NumberOfStudyRelatedInstances' : '', |
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4197 'NumberOfStudyRelatedSeries' : '', |
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4198 'NumberOfSeriesRelatedInstances' : '', |
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4199 } |
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4200 |
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4201 tags2 = copy.copy(tags) |
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4202 tags2['PatientID'] = '887' # Only consider the "Knee" patient |
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4203 |
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4204 patient = DoPost(_REMOTE, '/modalities/self/query', { |
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4205 'Level' : 'Patient', |
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4206 'Query' : tags2 |
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|
4207 }) ['ID'] |
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diff
changeset
|
4208 |
7d585263808b
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diff
changeset
|
4209 study = DoPost(_REMOTE, '/modalities/self/query', { |
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diff
changeset
|
4210 'Level' : 'Study', |
189
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test_dicom_disk_size
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diff
changeset
|
4211 'Query' : tags2 |
188
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diff
changeset
|
4212 }) ['ID'] |
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diff
changeset
|
4213 |
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diff
changeset
|
4214 series = DoPost(_REMOTE, '/modalities/self/query', { |
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diff
changeset
|
4215 'Level' : 'Series', |
189
11719f19bd62
test_dicom_disk_size
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188
diff
changeset
|
4216 'Query' : tags2 |
188
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diff
changeset
|
4217 }) ['ID'] |
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diff
changeset
|
4218 |
7d585263808b
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diff
changeset
|
4219 instance = DoPost(_REMOTE, '/modalities/self/query', { |
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diff
changeset
|
4220 'Level' : 'Instance', |
189
11719f19bd62
test_dicom_disk_size
Sebastien Jodogne <s.jodogne@gmail.com>
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diff
changeset
|
4221 'Query' : tags2 |
188
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diff
changeset
|
4222 }) ['ID'] |
7d585263808b
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diff
changeset
|
4223 |
7d585263808b
new test: test_queries_hierarchy
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diff
changeset
|
4224 p = DoGet(_REMOTE, '/queries/%s/answers?expand&simplify' % patient) |
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diff
changeset
|
4225 self.assertEqual(1, len(p)) |
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changeset
|
4226 self.assertEqual('887', p[0]['PatientID']) |
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diff
changeset
|
4227 self.assertEqual('1', p[0]['NumberOfPatientRelatedInstances']) |
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changeset
|
4228 self.assertEqual('1', p[0]['NumberOfPatientRelatedSeries']) |
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changeset
|
4229 self.assertEqual('1', p[0]['NumberOfPatientRelatedStudies']) |
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diff
changeset
|
4230 self.assertFalse('NumberOfStudyRelatedInstances' in p[0]) |
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diff
changeset
|
4231 self.assertFalse('NumberOfStudyRelatedSeries' in p[0]) |
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diff
changeset
|
4232 self.assertFalse('NumberOfSeriesRelatedInstances' in p[0]) |
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diff
changeset
|
4233 |
7d585263808b
new test: test_queries_hierarchy
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diff
changeset
|
4234 p = DoGet(_REMOTE, '/queries/%s/answers?expand&simplify' % study) |
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diff
changeset
|
4235 self.assertEqual(1, len(p)) |
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changeset
|
4236 self.assertEqual('2.16.840.1.113669.632.20.121711.10000160881', p[0]['StudyInstanceUID']) |
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diff
changeset
|
4237 self.assertEqual('1', p[0]['NumberOfStudyRelatedInstances']) |
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diff
changeset
|
4238 self.assertEqual('1', p[0]['NumberOfStudyRelatedSeries']) |
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diff
changeset
|
4239 self.assertFalse('NumberOfPatientRelatedInstances' in p[0]) |
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diff
changeset
|
4240 self.assertFalse('NumberOfPatientRelatedSeries' in p[0]) |
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diff
changeset
|
4241 self.assertFalse('NumberOfPatientRelatedInstances' in p[0]) |
7d585263808b
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diff
changeset
|
4242 self.assertFalse('NumberOfSeriesRelatedInstances' in p[0]) |
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new test: test_queries_hierarchy
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diff
changeset
|
4243 |
7d585263808b
new test: test_queries_hierarchy
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diff
changeset
|
4244 p = DoGet(_REMOTE, '/queries/%s/answers?expand&simplify' % series) |
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new test: test_queries_hierarchy
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diff
changeset
|
4245 self.assertEqual(1, len(p)) |
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diff
changeset
|
4246 self.assertEqual('1.3.46.670589.11.17521.5.0.3124.2008081908564160709', p[0]['SeriesInstanceUID']) |
7d585263808b
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diff
changeset
|
4247 self.assertEqual('1', p[0]['NumberOfSeriesRelatedInstances']) |
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diff
changeset
|
4248 self.assertFalse('NumberOfPatientRelatedInstances' in p[0]) |
7d585263808b
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diff
changeset
|
4249 self.assertFalse('NumberOfPatientRelatedSeries' in p[0]) |
7d585263808b
new test: test_queries_hierarchy
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diff
changeset
|
4250 self.assertFalse('NumberOfPatientRelatedInstances' in p[0]) |
7d585263808b
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diff
changeset
|
4251 self.assertFalse('NumberOfStudyRelatedInstances' in p[0]) |
7d585263808b
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diff
changeset
|
4252 self.assertFalse('NumberOfStudyRelatedSeries' in p[0]) |
7d585263808b
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diff
changeset
|
4253 |
7d585263808b
new test: test_queries_hierarchy
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diff
changeset
|
4254 p = DoGet(_REMOTE, '/queries/%s/answers?expand&simplify' % instance) |
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diff
changeset
|
4255 self.assertEqual(1, len(p)) |
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diff
changeset
|
4256 self.assertEqual('1.3.46.670589.11.17521.5.0.3124.2008081908590448738', p[0]['SOPInstanceUID']) |
7d585263808b
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diff
changeset
|
4257 |
7d585263808b
new test: test_queries_hierarchy
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diff
changeset
|
4258 j = DoPost(_REMOTE, '/queries/%s/answers/0/query-studies' % patient, |
7d585263808b
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diff
changeset
|
4259 { 'Query' : tags }) ['ID'] |
7d585263808b
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diff
changeset
|
4260 self.assertEqual(DoGet(_REMOTE, '/queries/%s/answers?expand&simplify' % j), |
7d585263808b
new test: test_queries_hierarchy
Sebastien Jodogne <s.jodogne@gmail.com>
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187
diff
changeset
|
4261 DoGet(_REMOTE, '/queries/%s/answers?expand&simplify' % study)) |
189
11719f19bd62
test_dicom_disk_size
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
188
diff
changeset
|
4262 |
188
7d585263808b
new test: test_queries_hierarchy
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diff
changeset
|
4263 j = DoPost(_REMOTE, '/queries/%s/answers/0/query-series' % patient, |
7d585263808b
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diff
changeset
|
4264 { 'Query' : tags }) ['ID'] |
7d585263808b
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parents:
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diff
changeset
|
4265 self.assertEqual(DoGet(_REMOTE, '/queries/%s/answers?expand&simplify' % j), |
7d585263808b
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diff
changeset
|
4266 DoGet(_REMOTE, '/queries/%s/answers?expand&simplify' % series)) |
7d585263808b
new test: test_queries_hierarchy
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diff
changeset
|
4267 |
7d585263808b
new test: test_queries_hierarchy
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parents:
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diff
changeset
|
4268 j = DoPost(_REMOTE, '/queries/%s/answers/0/query-instances' % patient, |
7d585263808b
new test: test_queries_hierarchy
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diff
changeset
|
4269 { 'Query' : tags }) ['ID'] |
7d585263808b
new test: test_queries_hierarchy
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parents:
187
diff
changeset
|
4270 self.assertEqual(DoGet(_REMOTE, '/queries/%s/answers?expand&simplify' % j), |
7d585263808b
new test: test_queries_hierarchy
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diff
changeset
|
4271 DoGet(_REMOTE, '/queries/%s/answers?expand&simplify' % instance)) |
7d585263808b
new test: test_queries_hierarchy
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diff
changeset
|
4272 |
7d585263808b
new test: test_queries_hierarchy
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187
diff
changeset
|
4273 j = DoPost(_REMOTE, '/queries/%s/answers/0/query-series' % study, |
7d585263808b
new test: test_queries_hierarchy
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parents:
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diff
changeset
|
4274 { 'Query' : tags }) ['ID'] |
7d585263808b
new test: test_queries_hierarchy
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parents:
187
diff
changeset
|
4275 self.assertEqual(DoGet(_REMOTE, '/queries/%s/answers?expand&simplify' % j), |
7d585263808b
new test: test_queries_hierarchy
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
187
diff
changeset
|
4276 DoGet(_REMOTE, '/queries/%s/answers?expand&simplify' % series)) |
7d585263808b
new test: test_queries_hierarchy
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parents:
187
diff
changeset
|
4277 |
7d585263808b
new test: test_queries_hierarchy
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parents:
187
diff
changeset
|
4278 j = DoPost(_REMOTE, '/queries/%s/answers/0/query-instances' % study, |
7d585263808b
new test: test_queries_hierarchy
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
187
diff
changeset
|
4279 { 'Query' : tags }) ['ID'] |
7d585263808b
new test: test_queries_hierarchy
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
187
diff
changeset
|
4280 self.assertEqual(DoGet(_REMOTE, '/queries/%s/answers?expand&simplify' % j), |
7d585263808b
new test: test_queries_hierarchy
Sebastien Jodogne <s.jodogne@gmail.com>
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187
diff
changeset
|
4281 DoGet(_REMOTE, '/queries/%s/answers?expand&simplify' % instance)) |
7d585263808b
new test: test_queries_hierarchy
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diff
changeset
|
4282 |
7d585263808b
new test: test_queries_hierarchy
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187
diff
changeset
|
4283 j = DoPost(_REMOTE, '/queries/%s/answers/0/query-instances' % series, |
7d585263808b
new test: test_queries_hierarchy
Sebastien Jodogne <s.jodogne@gmail.com>
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187
diff
changeset
|
4284 { 'Query' : tags }) ['ID'] |
7d585263808b
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parents:
187
diff
changeset
|
4285 self.assertEqual(DoGet(_REMOTE, '/queries/%s/answers?expand&simplify' % j), |
7d585263808b
new test: test_queries_hierarchy
Sebastien Jodogne <s.jodogne@gmail.com>
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187
diff
changeset
|
4286 DoGet(_REMOTE, '/queries/%s/answers?expand&simplify' % instance)) |
7d585263808b
new test: test_queries_hierarchy
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187
diff
changeset
|
4287 |
7d585263808b
new test: test_queries_hierarchy
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187
diff
changeset
|
4288 |
189
11719f19bd62
test_dicom_disk_size
Sebastien Jodogne <s.jodogne@gmail.com>
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188
diff
changeset
|
4289 def test_dicom_disk_size(self): |
11719f19bd62
test_dicom_disk_size
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diff
changeset
|
4290 dicomSize = 0 |
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diff
changeset
|
4291 |
11719f19bd62
test_dicom_disk_size
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diff
changeset
|
4292 UploadInstance(_REMOTE, 'Brainix/Flair/IM-0001-0001.dcm') |
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test_dicom_disk_size
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diff
changeset
|
4293 |
11719f19bd62
test_dicom_disk_size
Sebastien Jodogne <s.jodogne@gmail.com>
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188
diff
changeset
|
4294 for i in range(2): |
11719f19bd62
test_dicom_disk_size
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diff
changeset
|
4295 p = 'Knee/T%d/IM-0001-0001.dcm' % (i + 1) |
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test_dicom_disk_size
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diff
changeset
|
4296 UploadInstance(_REMOTE, p) |
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test_dicom_disk_size
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diff
changeset
|
4297 dicomSize += os.path.getsize(GetDatabasePath(p)) |
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test_dicom_disk_size
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188
diff
changeset
|
4298 |
11719f19bd62
test_dicom_disk_size
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diff
changeset
|
4299 s = DoGet(_REMOTE, '/patients/ca29faea-b6a0e17f-067743a1-8b778011-a48b2a17/statistics') # Consider Knee patient |
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diff
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|
4300 self.assertEqual(2, s['CountInstances']) |
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test_dicom_disk_size
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diff
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|
4301 self.assertEqual(2, s['CountSeries']) |
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test_dicom_disk_size
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diff
changeset
|
4302 self.assertEqual(1, s['CountStudies']) |
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test_dicom_disk_size
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diff
changeset
|
4303 self.assertEqual(dicomSize, int(s['DicomDiskSize'])) |
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test_dicom_disk_size
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diff
changeset
|
4304 self.assertEqual(dicomSize, int(s['DicomUncompressedSize'])) |
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test_dicom_disk_size
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diff
changeset
|
4305 self.assertLess(dicomSize, int(s['UncompressedSize'])) |
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test_dicom_disk_size
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diff
changeset
|
4306 self.assertEqual(s['UncompressedSize'], s['DiskSize']) |
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test_dicom_disk_size
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diff
changeset
|
4307 |
202
f26f9ae9c599
test_changes_2 and test_bitbucket_issue_124
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195
diff
changeset
|
4308 |
f26f9ae9c599
test_changes_2 and test_bitbucket_issue_124
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195
diff
changeset
|
4309 def test_changes_2(self): |
f26f9ae9c599
test_changes_2 and test_bitbucket_issue_124
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diff
changeset
|
4310 # More consistent behavior since Orthanc 1.5.2 |
f26f9ae9c599
test_changes_2 and test_bitbucket_issue_124
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diff
changeset
|
4311 # https://groups.google.com/d/msg/orthanc-users/QhzB6vxYeZ0/YxabgqpfBAAJ |
f26f9ae9c599
test_changes_2 and test_bitbucket_issue_124
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195
diff
changeset
|
4312 |
f26f9ae9c599
test_changes_2 and test_bitbucket_issue_124
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195
diff
changeset
|
4313 # Make sure that this is not the first change |
f26f9ae9c599
test_changes_2 and test_bitbucket_issue_124
Sebastien Jodogne <s.jodogne@gmail.com>
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195
diff
changeset
|
4314 self.assertEqual(0, len(DoGet(_REMOTE, '/instances'))) |
f26f9ae9c599
test_changes_2 and test_bitbucket_issue_124
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parents:
195
diff
changeset
|
4315 a = UploadInstance(_REMOTE, 'DummyCT.dcm')['ID'] |
f26f9ae9c599
test_changes_2 and test_bitbucket_issue_124
Sebastien Jodogne <s.jodogne@gmail.com>
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195
diff
changeset
|
4316 self.assertEqual(1, len(DoGet(_REMOTE, '/instances'))) |
f26f9ae9c599
test_changes_2 and test_bitbucket_issue_124
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195
diff
changeset
|
4317 DoDelete(_REMOTE, '/instances/%s' % a) |
f26f9ae9c599
test_changes_2 and test_bitbucket_issue_124
Sebastien Jodogne <s.jodogne@gmail.com>
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195
diff
changeset
|
4318 |
f26f9ae9c599
test_changes_2 and test_bitbucket_issue_124
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195
diff
changeset
|
4319 # No more instance, but there were previous changes |
f26f9ae9c599
test_changes_2 and test_bitbucket_issue_124
Sebastien Jodogne <s.jodogne@gmail.com>
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195
diff
changeset
|
4320 self.assertEqual(0, len(DoGet(_REMOTE, '/instances'))) |
f26f9ae9c599
test_changes_2 and test_bitbucket_issue_124
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
195
diff
changeset
|
4321 |
f26f9ae9c599
test_changes_2 and test_bitbucket_issue_124
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parents:
195
diff
changeset
|
4322 c = DoGet(_REMOTE, '/changes') |
f26f9ae9c599
test_changes_2 and test_bitbucket_issue_124
Sebastien Jodogne <s.jodogne@gmail.com>
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195
diff
changeset
|
4323 self.assertEqual(0, len(c['Changes'])) |
f26f9ae9c599
test_changes_2 and test_bitbucket_issue_124
Sebastien Jodogne <s.jodogne@gmail.com>
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195
diff
changeset
|
4324 self.assertTrue(c['Done']) |
f26f9ae9c599
test_changes_2 and test_bitbucket_issue_124
Sebastien Jodogne <s.jodogne@gmail.com>
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195
diff
changeset
|
4325 seq = c['Last'] |
f26f9ae9c599
test_changes_2 and test_bitbucket_issue_124
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
195
diff
changeset
|
4326 |
f26f9ae9c599
test_changes_2 and test_bitbucket_issue_124
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
195
diff
changeset
|
4327 c = DoGet(_REMOTE, '/changes?last') |
f26f9ae9c599
test_changes_2 and test_bitbucket_issue_124
Sebastien Jodogne <s.jodogne@gmail.com>
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195
diff
changeset
|
4328 self.assertEqual(0, len(c['Changes'])) |
f26f9ae9c599
test_changes_2 and test_bitbucket_issue_124
Sebastien Jodogne <s.jodogne@gmail.com>
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195
diff
changeset
|
4329 self.assertTrue(c['Done']) |
f26f9ae9c599
test_changes_2 and test_bitbucket_issue_124
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
195
diff
changeset
|
4330 self.assertEqual(seq, c['Last']) |
f26f9ae9c599
test_changes_2 and test_bitbucket_issue_124
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
195
diff
changeset
|
4331 |
f26f9ae9c599
test_changes_2 and test_bitbucket_issue_124
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
195
diff
changeset
|
4332 c = DoGet(_REMOTE, '/changes?since=%d' % (seq + 1000)) |
f26f9ae9c599
test_changes_2 and test_bitbucket_issue_124
Sebastien Jodogne <s.jodogne@gmail.com>
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195
diff
changeset
|
4333 self.assertEqual(0, len(c['Changes'])) |
f26f9ae9c599
test_changes_2 and test_bitbucket_issue_124
Sebastien Jodogne <s.jodogne@gmail.com>
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195
diff
changeset
|
4334 self.assertTrue(c['Done']) |
f26f9ae9c599
test_changes_2 and test_bitbucket_issue_124
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
195
diff
changeset
|
4335 self.assertEqual(seq, c['Last']) |
f26f9ae9c599
test_changes_2 and test_bitbucket_issue_124
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
195
diff
changeset
|
4336 |
f26f9ae9c599
test_changes_2 and test_bitbucket_issue_124
Sebastien Jodogne <s.jodogne@gmail.com>
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195
diff
changeset
|
4337 # Add one instance |
f26f9ae9c599
test_changes_2 and test_bitbucket_issue_124
Sebastien Jodogne <s.jodogne@gmail.com>
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195
diff
changeset
|
4338 UploadInstance(_REMOTE, 'DummyCT.dcm') |
f26f9ae9c599
test_changes_2 and test_bitbucket_issue_124
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
195
diff
changeset
|
4339 self.assertEqual(1, len(DoGet(_REMOTE, '/instances'))) |
f26f9ae9c599
test_changes_2 and test_bitbucket_issue_124
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
195
diff
changeset
|
4340 |
f26f9ae9c599
test_changes_2 and test_bitbucket_issue_124
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
195
diff
changeset
|
4341 c = DoGet(_REMOTE, '/changes') |
f26f9ae9c599
test_changes_2 and test_bitbucket_issue_124
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
195
diff
changeset
|
4342 self.assertEqual(4, len(c['Changes'])) |
f26f9ae9c599
test_changes_2 and test_bitbucket_issue_124
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
195
diff
changeset
|
4343 self.assertTrue(c['Done']) |
f26f9ae9c599
test_changes_2 and test_bitbucket_issue_124
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
195
diff
changeset
|
4344 self.assertEqual(seq + 4, c['Last']) |
f26f9ae9c599
test_changes_2 and test_bitbucket_issue_124
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
195
diff
changeset
|
4345 |
f26f9ae9c599
test_changes_2 and test_bitbucket_issue_124
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
195
diff
changeset
|
4346 c = DoGet(_REMOTE, '/changes?last') |
f26f9ae9c599
test_changes_2 and test_bitbucket_issue_124
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
195
diff
changeset
|
4347 self.assertEqual(1, len(c['Changes'])) |
f26f9ae9c599
test_changes_2 and test_bitbucket_issue_124
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
195
diff
changeset
|
4348 self.assertTrue(c['Done']) |
f26f9ae9c599
test_changes_2 and test_bitbucket_issue_124
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
195
diff
changeset
|
4349 self.assertEqual(seq + 4, c['Last']) |
f26f9ae9c599
test_changes_2 and test_bitbucket_issue_124
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
195
diff
changeset
|
4350 |
f26f9ae9c599
test_changes_2 and test_bitbucket_issue_124
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
195
diff
changeset
|
4351 c = DoGet(_REMOTE, '/changes?since=%d' % (seq + 1000)) |
f26f9ae9c599
test_changes_2 and test_bitbucket_issue_124
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
195
diff
changeset
|
4352 self.assertEqual(0, len(c['Changes'])) |
f26f9ae9c599
test_changes_2 and test_bitbucket_issue_124
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
195
diff
changeset
|
4353 self.assertTrue(c['Done']) |
f26f9ae9c599
test_changes_2 and test_bitbucket_issue_124
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
195
diff
changeset
|
4354 self.assertEqual(seq + 4, c['Last']) |
f26f9ae9c599
test_changes_2 and test_bitbucket_issue_124
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
195
diff
changeset
|
4355 |
f26f9ae9c599
test_changes_2 and test_bitbucket_issue_124
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
195
diff
changeset
|
4356 # Remove the uploaded instance |
f26f9ae9c599
test_changes_2 and test_bitbucket_issue_124
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
195
diff
changeset
|
4357 DoDelete(_REMOTE, '/instances/%s' % a) |
f26f9ae9c599
test_changes_2 and test_bitbucket_issue_124
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
195
diff
changeset
|
4358 self.assertEqual(0, len(DoGet(_REMOTE, '/instances'))) |
f26f9ae9c599
test_changes_2 and test_bitbucket_issue_124
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
195
diff
changeset
|
4359 |
f26f9ae9c599
test_changes_2 and test_bitbucket_issue_124
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
195
diff
changeset
|
4360 c = DoGet(_REMOTE, '/changes') |
f26f9ae9c599
test_changes_2 and test_bitbucket_issue_124
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
195
diff
changeset
|
4361 self.assertEqual(0, len(c['Changes'])) |
f26f9ae9c599
test_changes_2 and test_bitbucket_issue_124
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
195
diff
changeset
|
4362 self.assertTrue(c['Done']) |
f26f9ae9c599
test_changes_2 and test_bitbucket_issue_124
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
195
diff
changeset
|
4363 self.assertEqual(seq + 4, c['Last']) |
f26f9ae9c599
test_changes_2 and test_bitbucket_issue_124
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
195
diff
changeset
|
4364 |
f26f9ae9c599
test_changes_2 and test_bitbucket_issue_124
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
195
diff
changeset
|
4365 c = DoGet(_REMOTE, '/changes?last') |
f26f9ae9c599
test_changes_2 and test_bitbucket_issue_124
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
195
diff
changeset
|
4366 self.assertEqual(0, len(c['Changes'])) |
f26f9ae9c599
test_changes_2 and test_bitbucket_issue_124
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
195
diff
changeset
|
4367 self.assertTrue(c['Done']) |
f26f9ae9c599
test_changes_2 and test_bitbucket_issue_124
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
195
diff
changeset
|
4368 self.assertEqual(seq + 4, c['Last']) |
f26f9ae9c599
test_changes_2 and test_bitbucket_issue_124
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
195
diff
changeset
|
4369 |
f26f9ae9c599
test_changes_2 and test_bitbucket_issue_124
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
195
diff
changeset
|
4370 c = DoGet(_REMOTE, '/changes?since=%d' % (seq + 1000)) |
f26f9ae9c599
test_changes_2 and test_bitbucket_issue_124
Sebastien Jodogne <s.jodogne@gmail.com>
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195
diff
changeset
|
4371 self.assertEqual(0, len(c['Changes'])) |
f26f9ae9c599
test_changes_2 and test_bitbucket_issue_124
Sebastien Jodogne <s.jodogne@gmail.com>
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195
diff
changeset
|
4372 self.assertTrue(c['Done']) |
f26f9ae9c599
test_changes_2 and test_bitbucket_issue_124
Sebastien Jodogne <s.jodogne@gmail.com>
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195
diff
changeset
|
4373 self.assertEqual(seq + 4, c['Last']) |
f26f9ae9c599
test_changes_2 and test_bitbucket_issue_124
Sebastien Jodogne <s.jodogne@gmail.com>
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195
diff
changeset
|
4374 |
f26f9ae9c599
test_changes_2 and test_bitbucket_issue_124
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
195
diff
changeset
|
4375 |
f26f9ae9c599
test_changes_2 and test_bitbucket_issue_124
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
195
diff
changeset
|
4376 def test_bitbucket_issue_124(self): |
f26f9ae9c599
test_changes_2 and test_bitbucket_issue_124
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
195
diff
changeset
|
4377 a = UploadInstance(_REMOTE, 'Issue124.dcm')['ID'] |
f26f9ae9c599
test_changes_2 and test_bitbucket_issue_124
Sebastien Jodogne <s.jodogne@gmail.com>
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195
diff
changeset
|
4378 |
f26f9ae9c599
test_changes_2 and test_bitbucket_issue_124
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
195
diff
changeset
|
4379 z = GetArchive(_REMOTE, '/patients/%s/media' % a) |
f26f9ae9c599
test_changes_2 and test_bitbucket_issue_124
Sebastien Jodogne <s.jodogne@gmail.com>
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195
diff
changeset
|
4380 self.assertEqual(2, len(z.namelist())) |
207
a515eec74078
test_invalid_findscp
Sebastien Jodogne <s.jodogne@gmail.com>
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202
diff
changeset
|
4381 |
a515eec74078
test_invalid_findscp
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
202
diff
changeset
|
4382 |
a515eec74078
test_invalid_findscp
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
202
diff
changeset
|
4383 def test_invalid_findscp(self): |
a515eec74078
test_invalid_findscp
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
202
diff
changeset
|
4384 UploadInstance(_REMOTE, 'DummyCT.dcm') |
a515eec74078
test_invalid_findscp
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
202
diff
changeset
|
4385 findscu = CallFindScu([ '-S', '-k', '8,52=IMAGE', '-k', '8,16', '-k', '2,2' ]) |
a515eec74078
test_invalid_findscp
Sebastien Jodogne <s.jodogne@gmail.com>
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202
diff
changeset
|
4386 self.assertEqual(0, len(re.findall('\(0002,0002\)', findscu))) |
208
2444c9a7c422
test_bitbucket_issue_90
Sebastien Jodogne <s.jodogne@gmail.com>
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diff
changeset
|
4387 |
2444c9a7c422
test_bitbucket_issue_90
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
207
diff
changeset
|
4388 |
2444c9a7c422
test_bitbucket_issue_90
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
207
diff
changeset
|
4389 def test_bitbucket_issue_90(self): |
2444c9a7c422
test_bitbucket_issue_90
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207
diff
changeset
|
4390 def CountDicomResults(sex): |
2444c9a7c422
test_bitbucket_issue_90
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diff
changeset
|
4391 a = CallFindScu([ '-S', '-k', '8,52=STUDY', '-k', sex ]) |
2444c9a7c422
test_bitbucket_issue_90
Sebastien Jodogne <s.jodogne@gmail.com>
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diff
changeset
|
4392 return len(re.findall('\(0010,0040\)', a)) |
2444c9a7c422
test_bitbucket_issue_90
Sebastien Jodogne <s.jodogne@gmail.com>
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diff
changeset
|
4393 |
2444c9a7c422
test_bitbucket_issue_90
Sebastien Jodogne <s.jodogne@gmail.com>
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207
diff
changeset
|
4394 def CountRestResults(sex): |
2444c9a7c422
test_bitbucket_issue_90
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diff
changeset
|
4395 a = DoPost(_REMOTE, '/tools/find', |
2444c9a7c422
test_bitbucket_issue_90
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diff
changeset
|
4396 { 'Level' : 'Study', 'Query' : { 'PatientSex' : sex } }) |
2444c9a7c422
test_bitbucket_issue_90
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diff
changeset
|
4397 return len(a) |
2444c9a7c422
test_bitbucket_issue_90
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207
diff
changeset
|
4398 |
2444c9a7c422
test_bitbucket_issue_90
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207
diff
changeset
|
4399 # Just like the "CR000000.dcm" of the issue, the test image |
2444c9a7c422
test_bitbucket_issue_90
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diff
changeset
|
4400 # "DummyCT.dcm" has the tag PatientSex (0010,0040) unset |
2444c9a7c422
test_bitbucket_issue_90
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diff
changeset
|
4401 UploadInstance(_REMOTE, 'DummyCT.dcm') |
2444c9a7c422
test_bitbucket_issue_90
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diff
changeset
|
4402 |
2444c9a7c422
test_bitbucket_issue_90
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diff
changeset
|
4403 # Test that the behavior of DICOM vs. REST API is consistent on missing tags |
2444c9a7c422
test_bitbucket_issue_90
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diff
changeset
|
4404 |
2444c9a7c422
test_bitbucket_issue_90
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diff
changeset
|
4405 # In wildcard constraints, the patient sex must be set for a match to occur |
2444c9a7c422
test_bitbucket_issue_90
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diff
changeset
|
4406 self.assertEqual(0, CountDicomResults('PatientSex=*')) |
2444c9a7c422
test_bitbucket_issue_90
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changeset
|
4407 self.assertEqual(0, CountRestResults('*')) |
2444c9a7c422
test_bitbucket_issue_90
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diff
changeset
|
4408 |
2444c9a7c422
test_bitbucket_issue_90
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diff
changeset
|
4409 # In single-valued constraints, the patient sex must be set |
2444c9a7c422
test_bitbucket_issue_90
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diff
changeset
|
4410 self.assertEqual(0, CountDicomResults('PatientSex=F')) |
2444c9a7c422
test_bitbucket_issue_90
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diff
changeset
|
4411 self.assertEqual(0, CountDicomResults('PatientSex=M')) |
2444c9a7c422
test_bitbucket_issue_90
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diff
changeset
|
4412 self.assertEqual(0, CountRestResults('F')) |
2444c9a7c422
test_bitbucket_issue_90
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changeset
|
4413 self.assertEqual(0, CountRestResults('M')) |
2444c9a7c422
test_bitbucket_issue_90
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diff
changeset
|
4414 |
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4415 # Empty constraints are only used to ask the actual value of |
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4416 # the tag to be added to the *answer*. The tag should not used |
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4417 # as a filter in such a situation. |
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4418 self.assertEqual(1, CountDicomResults('PatientSex')) |
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4419 self.assertEqual(1, CountDicomResults('PatientSex=')) |
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4420 self.assertEqual(1, CountRestResults('')) # This check fails on Orthanc <= 1.5.2 (issue 90) |
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4421 |
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4422 |
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4423 def test_rest_modalities_in_study(self): |
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4424 # Tests a regression that is present in Orthanc 1.5.2 and 1.5.3 |
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4425 # https://groups.google.com/d/msg/orthanc-users/7lZyG3wpx-M/uOXzAzVCFwAJ |
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4426 UploadInstance(_REMOTE, 'ColorTestImageJ.dcm') |
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4427 |
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4428 a = DoPost(_REMOTE, '/tools/find', { 'Level' : 'Study', |
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4429 'Query' : { 'ModalitiesInStudy' : 'US' }}) |
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4430 self.assertEqual(0, len(a)) |
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4431 |
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4432 a = DoPost(_REMOTE, '/tools/find', { 'Level' : 'Study', |
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4433 'Query' : { 'ModalitiesInStudy' : 'US\\CT' }}) |
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4434 self.assertEqual(1, len(a)) |
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4435 |
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4436 a = DoPost(_REMOTE, '/tools/find', { 'Level' : 'Study', |
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4437 'Query' : { 'ModalitiesInStudy' : 'CT' }}) |
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4438 self.assertEqual(1, len(a)) |
211 | 4439 |
4440 | |
4441 def test_series_status(self): | |
4442 def HasCompletedInChanges(): | |
4443 for c in DoGet(_REMOTE, '/changes?limit=1000&since=0')['Changes']: | |
4444 if c['ChangeType'] == 'CompletedSeries': | |
4445 return True; | |
4446 | |
4447 return False | |
4448 | |
4449 UploadInstance(_REMOTE, 'Knix/Loc/IM-0001-0001.dcm') | |
4450 series = '8ea120d7-5057d919-837dfbcc-ccd04e0f-7f3a94aa' | |
4451 self.assertEqual('Unknown', DoGet(_REMOTE, '/series/%s' % series)['Status']) | |
4452 self.assertFalse(HasCompletedInChanges()) | |
4453 | |
4454 series = 'ce25ecb6-ed79d004-5ae43ca7-3fc89bc5-67511614' | |
4455 | |
4456 for i in range(3): | |
4457 UploadInstance(_REMOTE, 'Series/Lena-%d.dcm' % (i + 1)) | |
4458 self.assertEqual('Missing', DoGet(_REMOTE, '/series/%s' % series)['Status']) | |
4459 self.assertFalse(HasCompletedInChanges()) | |
4460 | |
4461 UploadInstance(_REMOTE, 'Series/Lena-4.dcm') | |
4462 self.assertEqual('Complete', DoGet(_REMOTE, '/series/%s' % series)['Status']) | |
4463 self.assertTrue(HasCompletedInChanges()) | |
4464 | |
4465 DoDelete(_REMOTE, '/changes') | |
4466 self.assertFalse(HasCompletedInChanges()) | |
4467 | |
4468 UploadInstance(_REMOTE, 'Series/Lena-5.dcm') | |
4469 self.assertEqual('Inconsistent', DoGet(_REMOTE, '/series/%s' % series)['Status']) | |
4470 self.assertFalse(HasCompletedInChanges()) | |
4471 | |
215 | 4472 |
4473 def test_dicomweb(self): | |
4474 def Compare(dicom, reference): | |
4475 a = UploadInstance(_REMOTE, dicom) ['ID'] | |
4476 b = DoGet(_REMOTE, '/instances/%s/file' % a, | |
4477 headers = { 'Accept' : 'application/dicom+json' }) | |
4478 with open(GetDatabasePath(reference), 'rb') as c: | |
4479 d = json.load(c) | |
220 | 4480 AssertAlmostEqualRecursive(self, d, b) |
215 | 4481 |
4482 Compare('DummyCT.dcm', 'DummyCT.json') | |
4483 Compare('MarekLatin2.dcm', 'MarekLatin2.json') | |
4484 Compare('HierarchicalAnonymization/StructuredReports/IM0', | |
4485 'HierarchicalAnonymization/StructuredReports/IM0.json') | |
217 | 4486 |
4487 | |
4488 def test_issue_95_encodings(self): | |
4489 # https://bitbucket.org/sjodogne/orthanc/issues/95/server-cant-support-chinese | |
4490 # Check out image: "../Database/Encodings/DavidClunie/charsettests.screenshot.png" | |
4491 | |
4492 # Very useful tool: "file2" from package "file-kanji" | |
4493 | |
4494 def GetPatientName(dicom): | |
4495 i = UploadInstance(_REMOTE, dicom) ['ID'] | |
4496 j = DoGet(_REMOTE, '/instances/%s/tags?simplify' % i) | |
4497 return j['PatientName'] | |
4498 | |
4499 def ComparePatientName(name, dicom): | |
4500 self.assertEqual(name, GetPatientName(dicom)) | |
4501 | |
4502 # gdcmraw -t 10,10 -i SCSFREN -o /tmp/tag && uconv -f ISO-IR-100 -t UTF-8 /tmp/tag && echo | |
4503 ComparePatientName(u'Buc^Jérôme', 'Encodings/DavidClunie/SCSFREN') | |
4504 | |
4505 # gdcmraw -t 10,10 -i SCSI2 -o /tmp/tag && uconv -f KOREAN -t UTF-8 /tmp/tag && echo | |
4506 ComparePatientName(u'Hong^Gildong=洪^吉洞=홍^길동', 'Encodings/DavidClunie/SCSI2') # Since Orthanc 1.5.5 | |
4507 | |
4508 # gdcmraw -t 10,10 -i SCSX2 -o /tmp/tag && uconv -f GB18030 -t UTF-8 /tmp/tag && echo | |
4509 ComparePatientName(u'Wang^XiaoDong=王^小东=', 'Encodings/DavidClunie/SCSX2') | |
4510 | |
4511 # gdcmraw -t 10,10 -i SCSX1 -o /tmp/tag && cat /tmp/tag && echo | |
4512 ComparePatientName(u'Wang^XiaoDong=王^小東=', 'Encodings/DavidClunie/SCSX1') | |
4513 | |
4514 # gdcmraw -t 10,10 -i SCSH31 -o /tmp/tag && uconv -f JIS -t UTF-8 /tmp/tag && echo | |
4515 ComparePatientName(u'Yamada^Tarou=山田^太郎=やまだ^たろう', 'Encodings/DavidClunie/SCSH31') | |
4516 | |
4517 # gdcmraw -t 10,10 -i SCSGERM -o /tmp/tag && uconv -f ISO-IR-100 -t UTF-8 /tmp/tag && echo | |
4518 ComparePatientName(u'Äneas^Rüdiger', 'Encodings/DavidClunie/SCSGERM') | |
4519 | |
4520 # gdcmraw -t 10,10 -i SCSGREEK -o /tmp/tag && uconv -f ISO-IR-126 -t UTF-8 /tmp/tag && echo | |
4521 ComparePatientName(u'Διονυσιος', 'Encodings/DavidClunie/SCSGREEK') | |
4522 | |
4523 # gdcmraw -t 10,10 -i SCSRUSS -o /tmp/tag && uconv -f ISO-IR-144 -t UTF-8 /tmp/tag && echo | |
4524 ComparePatientName(u'Люкceмбypг', 'Encodings/DavidClunie/SCSRUSS') | |
4525 | |
4526 # gdcmraw -t 10,10 -i SCSHBRW -o /tmp/tag && uconv -f ISO-IR-138 -t UTF-8 /tmp/tag && echo | |
4527 # NB: Hebrew is a right-to-left encoding, copying/pasting from | |
4528 # Linux console into Emacs automatically reverse the string | |
4529 ComparePatientName(u'שרון^דבורה', 'Encodings/DavidClunie/SCSHBRW') | |
4530 | |
4531 # gdcmraw -t 10,10 -i SCSARAB -o /tmp/tag && uconv -f ISO-IR-127 -t UTF-8 /tmp/tag && echo | |
4532 # NB: Right-to-left as for Hebrew (SCSHBRW), and the Ubuntu console can't display such | |
4533 # characters by default, but copy/paste works with Emacs | |
4534 ComparePatientName(u'قباني^لنزار', 'Encodings/DavidClunie/SCSARAB') | |
4535 | |
4536 # SCSH32: This SpecificCharacterSet is composed of 2 | |
4537 # codepages: "ISO 2022 IR 13" (i.e. "SHIFT_JIS") until the | |
4538 # first equal, then "ISO 2022 IR 87" (i.e. "JIS") for the | |
4539 # remainer. Orthanc only takes into consideration the first | |
4540 # codepage: This is a limitation. | |
4541 # gdcmraw -t 10,10 -i SCSH32 -o /tmp/tag && cut -d '=' -f 1 /tmp/tag | uconv -f SHIFT_JIS -t UTF-8 | |
4542 self.assertTrue(GetPatientName('Encodings/DavidClunie/SCSH32').startswith(u'ヤマダ^タロウ=')) | |
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4543 |
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4544 |
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4545 def test_findscu_missing_tags(self): |
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4546 # dcmodify -e Rows DummyCTInvalidRows.dcm -gst -gse -gin |
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4547 UploadInstance(_REMOTE, 'DummyCT.dcm') |
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4548 UploadInstance(_REMOTE, 'DummyCTInvalidRows.dcm') |
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4549 |
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4550 i = CallFindScu([ '-k', '0008,0052=IMAGES', '-k', 'Rows', '-k', 'PatientName' ]) |
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4551 |
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4552 # We have 2 instances... |
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4553 patientNames = re.findall('\(0010,0010\).*?\[(.*?)\]', i) |
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4554 self.assertEqual(2, len(patientNames)) |
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4555 self.assertEqual('KNIX', patientNames[0]) |
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4556 self.assertEqual('KNIX', patientNames[1]) |
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4557 |
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4558 # ...but only 1 value for the "Rows" tag |
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4559 rows = re.findall('\(0028,0010\) US ([0-9]+)', i) |
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4560 self.assertEqual(1, len(rows)) |
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4561 self.assertEqual('512', rows[0]) |
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4562 |
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4563 |
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4564 |
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4565 def test_bitbucket_issue_131(self): |
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4566 # "Orthanc PACS silently fails to C-MOVE due to duplicate |
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4567 # StudyInstanceUID in it's database." |
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4568 # https://bitbucket.org/sjodogne/orthanc/issues/131/orthanc-pacs-silently-fails-to-c-move-due |
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4569 |
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4570 # Insert 2 instances, with the same StudyInstanceUID, but with |
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4571 # different patient IDs. Orthanc will create 2 distincts |
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4572 # patients, and the hierarchy of resources above the two |
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4573 # instances will be fully disjoint. |
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4574 UploadInstance(_REMOTE, 'PatientIdsCollision/Issue131-a.dcm') |
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4575 UploadInstance(_REMOTE, 'PatientIdsCollision/Issue131-b.dcm') |
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4576 |
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4577 self.assertEqual(2, len(DoGet(_REMOTE, '/patients'))) |
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4578 self.assertEqual(2, len(DoGet(_REMOTE, '/studies'))) |
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4579 |
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4580 a = DoPost(_REMOTE, '/modalities/self/query', { |
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4581 'Level' : 'Study', |
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4582 'Query' : {"PatientID": "A" }})['ID'] |
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4583 |
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4584 # 1 study is matched |
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4585 self.assertEqual(1, len(DoGet(_REMOTE, '/queries/%s/answers' % a))) |
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4586 |
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4587 self.assertEqual(0, len(DoGet(_LOCAL, '/instances'))) |
220 | 4588 WaitAllNewJobsDone(_REMOTE, lambda: DoPost |
4589 (_REMOTE, '/queries/%s/retrieve' % a, | |
4590 '{"TargetAet":"ORTHANCTEST","Synchronous":false}')) | |
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4591 |
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4592 # The two studies are matched, as we made the request at the |
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4593 # Study level, thus the shared StudyInstanceUID is used as the key |
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4594 self.assertEqual(2, len(DoGet(_LOCAL, '/instances'))) |
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4595 |
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4596 |
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diff
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4597 # Match the 2 studies |
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4598 a = DoPost(_REMOTE, '/modalities/self/query', { |
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4599 'Level' : 'Study', |
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4600 'Query' : {"StudyInstanceUID": "2.25.123" }})['ID'] |
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4601 self.assertEqual(2, len(DoGet(_REMOTE, '/queries/%s/answers' % a))) |
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4602 DropOrthanc(_LOCAL) |
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4603 self.assertEqual(0, len(DoGet(_LOCAL, '/instances'))) |
220 | 4604 WaitAllNewJobsDone(_REMOTE, lambda: DoPost |
4605 (_REMOTE, '/queries/%s/retrieve' % a, | |
4606 '{"TargetAet":"ORTHANCTEST","Synchronous":false}')) | |
219
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4607 self.assertEqual(2, len(DoGet(_LOCAL, '/instances'))) |
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|
4608 |
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|
4609 |
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4610 # Same test, at the patient level => only 1 instance is transfered |
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4611 a = DoPost(_REMOTE, '/modalities/self/query', { |
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4612 'Level' : 'Patient', |
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4613 'Query' : {"PatientID": "A" }})['ID'] |
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4614 self.assertEqual(1, len(DoGet(_REMOTE, '/queries/%s/answers' % a))) |
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4615 DropOrthanc(_LOCAL) |
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|
4616 self.assertEqual(0, len(DoGet(_LOCAL, '/instances'))) |
220 | 4617 WaitAllNewJobsDone(_REMOTE, lambda: DoPost |
4618 (_REMOTE, '/queries/%s/retrieve' % a, | |
4619 '{"TargetAet":"ORTHANCTEST","Synchronous":false}')) | |
219
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|
4620 self.assertEqual(1, len(DoGet(_LOCAL, '/instances'))) |
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|
4621 |
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|
4622 |
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|
4623 # Same test, at the series level => only 1 instance is transfered |
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4624 a = DoPost(_REMOTE, '/modalities/self/query', { |
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|
4625 'Level' : 'Series', |
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4626 'Query' : {"PatientID": "A" }})['ID'] |
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4627 self.assertEqual(1, len(DoGet(_REMOTE, '/queries/%s/answers' % a))) |
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|
4628 DropOrthanc(_LOCAL) |
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diff
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|
4629 self.assertEqual(0, len(DoGet(_LOCAL, '/instances'))) |
220 | 4630 WaitAllNewJobsDone(_REMOTE, lambda: DoPost |
4631 (_REMOTE, '/queries/%s/retrieve' % a, | |
4632 '{"TargetAet":"ORTHANCTEST","Synchronous":false}')) | |
219
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|
4633 self.assertEqual(1, len(DoGet(_LOCAL, '/instances'))) |
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4634 |
233
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diff
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|
4635 |
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|
4636 def test_bitbucket_issue_136(self): |
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4637 UploadInstance(_REMOTE, 'Issue137.dcm') |
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4638 i = CallFindScu([ '-k', '0008,0052=STUDY', '-k', '0010,0010', '-k', '0028,0010', '-k', '0040,0275' ]) |
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4639 patientNames = re.findall('\(0010,0010\).*?\[(.*?)\]', i) |
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4640 self.assertEqual(1, len(patientNames)) |
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|
4641 self.assertEqual('John Doe', patientNames[0]) |
234
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4642 |
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4643 |
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4644 def test_anonymize_relationships_4(self): |
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4645 # https://groups.google.com/d/msg/orthanc-users/UkcsqyTpszE/bXUpzU0vAAAJ |
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4646 sr1 = UploadInstance(_REMOTE, 'HierarchicalAnonymization/2019-03-28/CR000000.dcm')['ID'] |
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4647 mr1 = UploadInstance(_REMOTE, 'HierarchicalAnonymization/2019-03-28/PR000000.dcm')['ID'] |
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diff
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4648 study = '0c923249-d52121a9-2b7167f7-6b85534f-0943697e' |
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4649 |
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diff
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|
4650 anonymized = DoPost(_REMOTE, '/studies/%s/anonymize' % study, '{}', |
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diff
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4651 'application/json')['ID'] |
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4652 series = DoGet(_REMOTE, '/studies/%s/series' % anonymized) |
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4653 self.assertEqual(2, len(series)) |
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4654 |
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diff
changeset
|
4655 cr = list(filter(lambda x: x['MainDicomTags']['Modality'] == 'CR', series)) |
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diff
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4656 pr = list(filter(lambda x: x['MainDicomTags']['Modality'] == 'PR', series)) |
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diff
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4657 self.assertEqual(1, len(cr)) |
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diff
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4658 self.assertEqual(1, len(pr)) |
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4659 self.assertEqual(1, len(cr[0]['Instances'])) |
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4660 self.assertEqual(1, len(pr[0]['Instances'])) |
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|
4661 |
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diff
changeset
|
4662 crinstance = DoGet(_REMOTE, '/instances/%s' % cr[0]['Instances'][0]) |
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diff
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4663 tags = DoGet(_REMOTE, '/instances/%s/tags?short' % pr[0]['Instances'][0]) |
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diff
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|
4664 |
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diff
changeset
|
4665 self.assertEqual(tags['0008,1115'][0]['0008,1140'][0]['0008,1155'], |
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diff
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|
4666 crinstance['MainDicomTags']['SOPInstanceUID']) |
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diff
changeset
|
4667 self.assertEqual(tags['0008,1115'][0]['0008,1140'][0]['0008,1150'], |
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diff
changeset
|
4668 '1.2.840.10008.5.1.4.1.1.1') # SOP class for CR Image Storage |
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diff
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|
4669 |
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diff
changeset
|
4670 # This fails on Orthanc <= 1.5.6 |
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diff
changeset
|
4671 self.assertEqual(tags['0008,1115'][0]['0020,000e'], |
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diff
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|
4672 cr[0]['MainDicomTags']['SeriesInstanceUID']) |
235
9929e4af2b7a
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234
diff
changeset
|
4673 |
9929e4af2b7a
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diff
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|
4674 |
255
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diff
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|
4675 def test_anonymize_relationships_5(self): |
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diff
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|
4676 ct1 = UploadInstance(_REMOTE, 'HierarchicalAnonymization/RTH/CT01.dcm') |
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diff
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|
4677 rt1 = UploadInstance(_REMOTE, 'HierarchicalAnonymization/RTH/RT.dcm') |
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diff
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|
4678 oStudyId = ct1['ParentStudy'] |
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254
diff
changeset
|
4679 oCtInstanceId = ct1['ID'] |
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254
diff
changeset
|
4680 oRtInstanceId = rt1['ID'] |
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parents:
254
diff
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|
4681 |
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254
diff
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|
4682 oCtTags = DoGet(_REMOTE, '/instances/%s/tags?simplify' % oCtInstanceId) |
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diff
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|
4683 oRtTags = DoGet(_REMOTE, '/instances/%s/tags?simplify' % oRtInstanceId) |
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diff
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|
4684 |
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254
diff
changeset
|
4685 # first validate the relationships in the source data |
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diff
changeset
|
4686 oStudyUID = oCtTags['StudyInstanceUID'] |
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diff
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|
4687 oRtSeriesUID = oRtTags['SeriesInstanceUID'] |
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diff
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|
4688 oRtInstanceUID = oRtTags['SOPInstanceUID'] |
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diff
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|
4689 oRtFrameOfReferenceUID = oRtTags['ReferencedFrameOfReferenceSequence'][0]['FrameOfReferenceUID'] |
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254
diff
changeset
|
4690 oCtSeriesUID = oCtTags['SeriesInstanceUID'] |
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254
diff
changeset
|
4691 oCtInstanceUID = oCtTags['SOPInstanceUID'] |
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diff
changeset
|
4692 oCtFrameOfReferenceUID = oCtTags['FrameOfReferenceUID'] |
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diff
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|
4693 |
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diff
changeset
|
4694 oContourSequenceCount = len(oRtTags['ROIContourSequence'][0]['ContourSequence']) |
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diff
changeset
|
4695 self.assertEqual(oCtFrameOfReferenceUID, oRtFrameOfReferenceUID) |
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254
diff
changeset
|
4696 self.assertEqual(oStudyUID, oRtTags['ReferencedFrameOfReferenceSequence'][0]['RTReferencedStudySequence'][0]['ReferencedSOPInstanceUID']) |
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diff
changeset
|
4697 self.assertEqual(oCtSeriesUID, oRtTags['ReferencedFrameOfReferenceSequence'][0]['RTReferencedStudySequence'][0]['RTReferencedSeriesSequence'][0]['SeriesInstanceUID']) |
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diff
changeset
|
4698 self.assertEqual(oCtInstanceUID, oRtTags['ReferencedFrameOfReferenceSequence'][0]['RTReferencedStudySequence'][0]['RTReferencedSeriesSequence'][0]['ContourImageSequence'][0]['ReferencedSOPInstanceUID']) |
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diff
changeset
|
4699 self.assertEqual(oCtInstanceUID, oRtTags['ROIContourSequence'][0]['ContourSequence'][oContourSequenceCount-1]['ContourImageSequence'][0]['ReferencedSOPInstanceUID']) |
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diff
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|
4700 |
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diff
changeset
|
4701 ### anonymize |
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diff
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|
4702 |
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diff
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|
4703 aStudyId = DoPost(_REMOTE, '/studies/%s/anonymize' % oStudyId, '{}', |
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diff
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|
4704 'application/json')['ID'] |
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diff
changeset
|
4705 |
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diff
changeset
|
4706 ### validate |
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diff
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|
4707 |
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diff
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|
4708 aSeries = DoGet(_REMOTE, '/studies/%s/series' % aStudyId) |
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diff
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|
4709 self.assertEqual(2, len(aSeries)) |
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diff
changeset
|
4710 |
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diff
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|
4711 aCt = list(filter(lambda x: x['MainDicomTags']['Modality'] == 'CT', aSeries)) |
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diff
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|
4712 aRt = list(filter(lambda x: x['MainDicomTags']['Modality'] == 'RTSTRUCT', aSeries)) |
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4713 aCtInstanceId = aCt[0]['Instances'][0] |
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4714 aRtInstanceId = aRt[0]['Instances'][0] |
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4715 aCtTags = DoGet(_REMOTE, '/instances/%s/tags?simplify' % aCtInstanceId) |
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4716 aRtTags = DoGet(_REMOTE, '/instances/%s/tags?simplify' % aRtInstanceId) |
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4717 |
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4718 # now validate the relationships in the anonymized data |
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4719 aStudyUID = aCtTags['StudyInstanceUID'] |
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4720 aRtSeriesUID = aRtTags['SeriesInstanceUID'] |
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4721 aRtInstanceUID = aRtTags['SOPInstanceUID'] |
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4722 aRtFrameOfReferenceUID = aRtTags['ReferencedFrameOfReferenceSequence'][0]['FrameOfReferenceUID'] |
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4723 aCtSeriesUID = aCtTags['SeriesInstanceUID'] |
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4724 aCtInstanceUID = aCtTags['SOPInstanceUID'] |
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4725 aCtFrameOfReferenceUID = aCtTags['FrameOfReferenceUID'] |
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4726 |
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4727 aContourSequenceCount = len(aRtTags['ROIContourSequence'][0]['ContourSequence']) |
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4728 # make sure all UIDs have been updated |
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4729 self.assertNotEqual(oStudyUID, aStudyUID) |
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4730 self.assertNotEqual(oRtSeriesUID, aRtSeriesUID) |
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4731 self.assertNotEqual(oRtInstanceUID, aRtInstanceUID) |
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4732 self.assertNotEqual(oRtFrameOfReferenceUID, aRtFrameOfReferenceUID) |
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4733 self.assertNotEqual(oCtSeriesUID, aCtSeriesUID) |
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4734 self.assertNotEqual(oCtInstanceUID, aCtInstanceUID) |
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4735 self.assertNotEqual(oCtFrameOfReferenceUID, aCtFrameOfReferenceUID) |
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4736 |
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4737 # validate the relationships |
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4738 self.assertEqual(oContourSequenceCount, aContourSequenceCount) |
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4739 self.assertEqual(aCtFrameOfReferenceUID, aRtFrameOfReferenceUID) |
256 | 4740 self.assertEqual(aStudyUID, aRtTags['ReferencedFrameOfReferenceSequence'][0]['RTReferencedStudySequence'][0]['ReferencedSOPInstanceUID']) |
4741 self.assertEqual(aCtSeriesUID, aRtTags['ReferencedFrameOfReferenceSequence'][0]['RTReferencedStudySequence'][0]['RTReferencedSeriesSequence'][0]['SeriesInstanceUID']) | |
255
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4742 self.assertEqual(aCtInstanceUID, aRtTags['ReferencedFrameOfReferenceSequence'][0]['RTReferencedStudySequence'][0]['RTReferencedSeriesSequence'][0]['ContourImageSequence'][0]['ReferencedSOPInstanceUID']) |
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4743 self.assertEqual(aCtInstanceUID, aRtTags['ROIContourSequence'][0]['ContourSequence'][aContourSequenceCount-1]['ContourImageSequence'][0]['ReferencedSOPInstanceUID']) |
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4744 |
256 | 4745 def test_anonymize_relationships_5b(self): |
4746 # same test as previous one but, this time, we force the StudyInstanceUID | |
4747 ct1 = UploadInstance(_REMOTE, 'HierarchicalAnonymization/RTH/CT01.dcm') | |
4748 rt1 = UploadInstance(_REMOTE, 'HierarchicalAnonymization/RTH/RT.dcm') | |
4749 oStudyId = ct1['ParentStudy'] | |
4750 oCtInstanceId = ct1['ID'] | |
4751 oRtInstanceId = rt1['ID'] | |
4752 | |
4753 oCtTags = DoGet(_REMOTE, '/instances/%s/tags?simplify' % oCtInstanceId) | |
4754 oRtTags = DoGet(_REMOTE, '/instances/%s/tags?simplify' % oRtInstanceId) | |
4755 | |
4756 ### anonymize while forcing the StudyInstanceUID | |
4757 | |
4758 aStudyId = DoPost(_REMOTE, '/studies/%s/anonymize' % oStudyId, '{ "Replace" : { "StudyInstanceUID" : "1.2.3.4"}, "Force": true}', | |
4759 'application/json')['ID'] | |
4760 | |
4761 ### validate | |
4762 | |
4763 aSeries = DoGet(_REMOTE, '/studies/%s/series' % aStudyId) | |
4764 self.assertEqual(2, len(aSeries)) | |
4765 | |
4766 aCt = list(filter(lambda x: x['MainDicomTags']['Modality'] == 'CT', aSeries)) | |
4767 aRt = list(filter(lambda x: x['MainDicomTags']['Modality'] == 'RTSTRUCT', aSeries)) | |
4768 aCtInstanceId = aCt[0]['Instances'][0] | |
4769 aRtInstanceId = aRt[0]['Instances'][0] | |
4770 aCtTags = DoGet(_REMOTE, '/instances/%s/tags?simplify' % aCtInstanceId) | |
4771 aRtTags = DoGet(_REMOTE, '/instances/%s/tags?simplify' % aRtInstanceId) | |
4772 | |
4773 self.assertEqual("1.2.3.4", aCtTags['StudyInstanceUID']) | |
4774 self.assertEqual("1.2.3.4", aRtTags['StudyInstanceUID']) | |
4775 self.assertEqual("1.2.3.4", aRtTags['ReferencedFrameOfReferenceSequence'][0]['RTReferencedStudySequence'][0]['ReferencedSOPInstanceUID']) | |
255
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4776 |
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4777 |
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4778 def test_bitbucket_issue_140(self): |
266 | 4779 # "Modifying private tags with REST API changes VR from LO to |
267 | 4780 # UN." This test fails if DCMTK <= 3.6.1 (e.g. fails on Ubuntu 16.04). |
266 | 4781 # https://bitbucket.org/sjodogne/orthanc/issues/140 |
235
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4782 source = UploadInstance(_REMOTE, 'Issue140.dcm') ['ID'] |
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4783 series = DoGet(_REMOTE, '/instances/%s' % source) ['ParentSeries'] |
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4784 |
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4785 target = DoPost(_REMOTE, '/series/%s/modify' % series, { |
266 | 4786 'Replace' : { 'RadioButton3' : 'aaabbbccc' }, |
4787 'PrivateCreator' : 'RadioLogic', # <= the trick is here | |
235
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4788 }, 'application/json') ['ID'] |
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4789 |
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4790 instances = DoGet(_REMOTE, '/series/%s/instances' % target) |
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4791 self.assertEqual(1, len(instances)) |
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4792 |
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4793 tags = DoGet(_REMOTE, '/instances/%s/tags' % source) |
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4794 t = tags['4321,1012'] |
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4795 self.assertEqual('String', t['Type']) |
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4796 self.assertEqual('RadioButton3', t['Name']) |
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4797 self.assertEqual('RadioLogic', t['PrivateCreator']) |
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4798 self.assertEqual('jklmopq', t['Value']) |
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4799 |
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4800 tags = DoGet(_REMOTE, '/instances/%s/tags' % instances[0]['ID']) |
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4801 t = tags['4321,1012'] |
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4802 self.assertEqual('String', t['Type']) |
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4803 self.assertEqual('RadioButton3', t['Name']) |
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4804 self.assertEqual('RadioLogic', t['PrivateCreator']) |
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4805 self.assertEqual('aaabbbccc', t['Value']) |
236
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4806 |
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4807 |
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4808 def test_find_normalize(self): |
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4809 # https://groups.google.com/d/msg/orthanc-users/AIwooGjsh94/YL28MNY4AgAJ |
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4810 |
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4811 UploadInstance(_REMOTE, 'Knee/T1/IM-0001-0001.dcm') |
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4812 |
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4813 a = DoPost(_REMOTE, '/modalities/self/query', { |
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4814 'Level' : 'Instance', |
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4815 'Query' : { 'Rows' : '42' } |
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4816 }) ['ID'] |
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4817 |
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4818 b = DoGet(_REMOTE, '/queries/%s/answers?expand&simplify' % a) |
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4819 self.assertEqual(1, len(b)) |
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4820 self.assertFalse('Rows' in b[0]) |
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4821 |
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4822 a = DoPost(_REMOTE, '/modalities/self/query', { |
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4823 'Level' : 'Instance', |
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4824 'Query' : { 'Rows' : '42' }, |
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4825 'Normalize' : False |
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4826 }) ['ID'] |
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4827 |
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4828 b = DoGet(_REMOTE, '/queries/%s/answers' % a) |
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4829 self.assertEqual(0, len(b)) |
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4830 |
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4831 a = DoPost(_REMOTE, '/modalities/self/query', { |
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4832 'Level' : 'Instance', |
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4833 'Query' : { 'Rows' : '512' }, |
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4834 'Normalize' : False |
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4835 }) ['ID'] |
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4836 |
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4837 b = DoGet(_REMOTE, '/queries/%s/answers?expand&simplify' % a) |
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4838 self.assertEqual(1, len(b)) |
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4839 self.assertTrue('Rows' in b[0]) |
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4840 self.assertEqual('512', b[0]['Rows']) |
237 | 4841 |
4842 a = DoPost(_REMOTE, '/modalities/self/query', { | |
4843 'Level' : 'Instance', | |
4844 'Query' : { 'Rows' : '' }, | |
4845 'Normalize' : False | |
4846 }) ['ID'] | |
4847 | |
4848 b = DoGet(_REMOTE, '/queries/%s/answers?expand&simplify' % a) | |
4849 self.assertEqual(1, len(b)) | |
4850 self.assertTrue('Rows' in b[0]) | |
4851 self.assertEqual('512', b[0]['Rows']) | |
4852 | |
4853 self.assertRaises(Exception, lambda: DoPost( | |
4854 _REMOTE, '/modalities/self/query', { | |
4855 'Level' : 'Instance', | |
4856 'Query' : { 'Rows' : '*' }, # Out-of-range value | |
4857 'Normalize' : False | |
4858 })) | |
243
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4859 |
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4860 |
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4861 def test_bitbucket_issue_141(self): |
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4862 # https://bitbucket.org/sjodogne/orthanc/issues/141/ |
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4863 a = UploadInstance(_REMOTE, 'Issue141.dcm') ['ID'] |
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4864 study = '494c8037-b237f263-d8f15075-c8cb2280-daf39bd1' |
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4865 |
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parents:
237
diff
changeset
|
4866 with open(GetDatabasePath('HelloWorld.pdf'), 'rb') as f: |
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diff
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|
4867 pdf = f.read() |
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diff
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|
4868 |
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test_bitbucket_issue_141
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237
diff
changeset
|
4869 b = DoPost(_REMOTE, '/tools/create-dicom', { |
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diff
changeset
|
4870 'Parent' : study, |
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237
diff
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|
4871 'Tags' : {}, |
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diff
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|
4872 'Content' : 'data:application/pdf;base64,' + base64.b64encode(pdf) |
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diff
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|
4873 }) ['ID'] |
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diff
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|
4874 |
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parents:
237
diff
changeset
|
4875 tagsA = DoGet(_REMOTE, '/instances/%s/tags?short' % a) |
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parents:
237
diff
changeset
|
4876 tagsB = DoGet(_REMOTE, '/instances/%s/tags?short' % b) |
cccf697a4e13
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parents:
237
diff
changeset
|
4877 self.assertEqual(tagsA['0008,0005'], tagsB['0008,0005']) |
cccf697a4e13
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Sebastien Jodogne <s.jodogne@gmail.com>
parents:
237
diff
changeset
|
4878 self.assertEqual(tagsA['0008,1030'], tagsB['0008,1030']) |
247
1abdab0ba0e6
test_modifying_missing_patientid
Sebastien Jodogne <s.jodogne@gmail.com>
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243
diff
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|
4879 |
1abdab0ba0e6
test_modifying_missing_patientid
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243
diff
changeset
|
4880 |
1abdab0ba0e6
test_modifying_missing_patientid
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diff
changeset
|
4881 def test_modifying_missing_patientid(self): |
1abdab0ba0e6
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243
diff
changeset
|
4882 # https://groups.google.com/d/msg/orthanc-users/aphG_h1AHVg/rfOTtTPTAgAJ |
1abdab0ba0e6
test_modifying_missing_patientid
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diff
changeset
|
4883 UploadInstance(_REMOTE, '2019-06-17-VedranZdesic.dcm') |
1abdab0ba0e6
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|
4884 DoPost(_REMOTE, '/studies/0c4aca1d-c107a241-6659d6aa-594c674a-a468b94a/modify', {}) |
262 | 4885 |
4886 | |
4887 def test_log_level(self): | |
4888 # https://bitbucket.org/sjodogne/orthanc/issues/65/ | |
4889 original = DoGet(_REMOTE, '/tools/log-level') | |
4890 | |
4891 DoPut(_REMOTE, '/tools/log-level', 'default') | |
4892 self.assertEqual('default', DoGet(_REMOTE, '/tools/log-level')) | |
4893 DoGet(_REMOTE, '/system') | |
4894 | |
4895 DoPut(_REMOTE, '/tools/log-level', 'verbose') | |
4896 self.assertEqual('verbose', DoGet(_REMOTE, '/tools/log-level')) | |
4897 DoGet(_REMOTE, '/system') | |
4898 | |
4899 DoPut(_REMOTE, '/tools/log-level', 'trace') | |
4900 self.assertEqual('trace', DoGet(_REMOTE, '/tools/log-level')) | |
4901 DoGet(_REMOTE, '/system') | |
4902 | |
4903 self.assertRaises(Exception, lambda: DoPut(_REMOTE, '/tools/log-level', 'nope')) | |
4904 | |
4905 # Switch back to the original log level | |
4906 DoPut(_REMOTE, '/tools/log-level', original) | |
264
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263
diff
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|
4907 |
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263
diff
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|
4908 |
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Sebastien Jodogne <s.jodogne@gmail.com>
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diff
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|
4909 def test_upload_compressed(self): |
265 | 4910 # New in Orthanc 1.6.0 |
264
445f498bc1d4
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|
4911 with open(GetDatabasePath('DummyCT.dcm.gz'), 'rb') as f: |
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diff
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|
4912 d = f.read() |
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diff
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|
4913 |
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|
4914 self.assertRaises(Exception, lambda: DoPost(_REMOTE, '/instances', d, 'application/dicom')) |
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diff
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|
4915 |
445f498bc1d4
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263
diff
changeset
|
4916 self.assertRaises(Exception, lambda: DoPost(_REMOTE, '/instances', d, 'application/dicom', |
445f498bc1d4
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diff
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|
4917 headers = { 'Content-Encoding' : 'nope' })) |
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263
diff
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|
4918 |
445f498bc1d4
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Sebastien Jodogne <s.jodogne@gmail.com>
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263
diff
changeset
|
4919 a = DoPost(_REMOTE, '/instances', d, 'application/dicom', |
445f498bc1d4
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diff
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|
4920 headers = { 'Content-Encoding' : 'gzip' }) |
445f498bc1d4
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parents:
263
diff
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|
4921 self.assertEqual('66a662ce-7430e543-bad44d47-0dc5a943-ec7a538d', a['ID']) |
262 | 4922 |
4923 | |
263
a2719263fd04
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Sebastien Jodogne <s.jodogne@gmail.com>
parents:
262
diff
changeset
|
4924 def test_study_series_find_inconsistency(self): |
a2719263fd04
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parents:
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diff
changeset
|
4925 # https://groups.google.com/forum/#!topic/orthanc-users/bLv6Z11COy0 |
a2719263fd04
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diff
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|
4926 |
a2719263fd04
test_study_series_find_inconsistency
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parents:
262
diff
changeset
|
4927 def CountAnswers(query): |
a2719263fd04
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262
diff
changeset
|
4928 a = DoPost(_REMOTE, 'modalities/self/query', query) |
a2719263fd04
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Sebastien Jodogne <s.jodogne@gmail.com>
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diff
changeset
|
4929 return len(DoGet(_REMOTE, '%s/answers' % a['Path'])) |
a2719263fd04
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parents:
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diff
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|
4930 |
a2719263fd04
test_study_series_find_inconsistency
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parents:
262
diff
changeset
|
4931 # This instance has "SeriesDescription" (0008,103e) tag, but no |
a2719263fd04
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Sebastien Jodogne <s.jodogne@gmail.com>
parents:
262
diff
changeset
|
4932 # "ProtocolName" (0018,1030). Both of those tags are part of |
a2719263fd04
test_study_series_find_inconsistency
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
262
diff
changeset
|
4933 # the "main DICOM tags" of Orthanc. |
a2719263fd04
test_study_series_find_inconsistency
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
262
diff
changeset
|
4934 UploadInstance(_REMOTE, 'Issue137.dcm') |
a2719263fd04
test_study_series_find_inconsistency
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
262
diff
changeset
|
4935 |
a2719263fd04
test_study_series_find_inconsistency
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
262
diff
changeset
|
4936 |
a2719263fd04
test_study_series_find_inconsistency
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
262
diff
changeset
|
4937 self.assertEqual(1, CountAnswers({ |
a2719263fd04
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Sebastien Jodogne <s.jodogne@gmail.com>
parents:
262
diff
changeset
|
4938 'Level' : 'Study', |
a2719263fd04
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Sebastien Jodogne <s.jodogne@gmail.com>
parents:
262
diff
changeset
|
4939 })) |
a2719263fd04
test_study_series_find_inconsistency
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
262
diff
changeset
|
4940 |
a2719263fd04
test_study_series_find_inconsistency
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
262
diff
changeset
|
4941 self.assertEqual(1, CountAnswers({ |
a2719263fd04
test_study_series_find_inconsistency
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
262
diff
changeset
|
4942 'Level' : 'Series', |
a2719263fd04
test_study_series_find_inconsistency
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
262
diff
changeset
|
4943 })) |
a2719263fd04
test_study_series_find_inconsistency
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
262
diff
changeset
|
4944 |
a2719263fd04
test_study_series_find_inconsistency
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
262
diff
changeset
|
4945 |
a2719263fd04
test_study_series_find_inconsistency
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
262
diff
changeset
|
4946 ## |
a2719263fd04
test_study_series_find_inconsistency
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parents:
262
diff
changeset
|
4947 ## "SeriesDescription" is present, and has VR "CS" => wildcard is allowed |
a2719263fd04
test_study_series_find_inconsistency
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
262
diff
changeset
|
4948 ## http://dicom.nema.org/medical/dicom/2019e/output/chtml/part04/sect_C.2.2.2.4.html |
a2719263fd04
test_study_series_find_inconsistency
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
262
diff
changeset
|
4949 ## |
a2719263fd04
test_study_series_find_inconsistency
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
262
diff
changeset
|
4950 |
a2719263fd04
test_study_series_find_inconsistency
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
262
diff
changeset
|
4951 # At the study level, the "SeriesDescription" tag is not allowed, but |
a2719263fd04
test_study_series_find_inconsistency
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parents:
262
diff
changeset
|
4952 # is wiped out by the normalization |
a2719263fd04
test_study_series_find_inconsistency
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
262
diff
changeset
|
4953 self.assertEqual(0, CountAnswers({ |
a2719263fd04
test_study_series_find_inconsistency
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
262
diff
changeset
|
4954 'Level' : 'Study', |
a2719263fd04
test_study_series_find_inconsistency
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
262
diff
changeset
|
4955 'Query' : { |
a2719263fd04
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Sebastien Jodogne <s.jodogne@gmail.com>
parents:
262
diff
changeset
|
4956 'SeriesDescription' : 'NOPE' |
a2719263fd04
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Sebastien Jodogne <s.jodogne@gmail.com>
parents:
262
diff
changeset
|
4957 }, |
a2719263fd04
test_study_series_find_inconsistency
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
262
diff
changeset
|
4958 'Normalize' : False |
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Sebastien Jodogne <s.jodogne@gmail.com>
parents:
262
diff
changeset
|
4959 })) |
a2719263fd04
test_study_series_find_inconsistency
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
262
diff
changeset
|
4960 self.assertEqual(0, CountAnswers({ |
a2719263fd04
test_study_series_find_inconsistency
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
262
diff
changeset
|
4961 # This test fails on Orthanc <= 1.5.8 |
a2719263fd04
test_study_series_find_inconsistency
Sebastien Jodogne <s.jodogne@gmail.com>
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262
diff
changeset
|
4962 'Level' : 'Study', |
a2719263fd04
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Sebastien Jodogne <s.jodogne@gmail.com>
parents:
262
diff
changeset
|
4963 'Query' : { |
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Sebastien Jodogne <s.jodogne@gmail.com>
parents:
262
diff
changeset
|
4964 'SeriesDescription' : '*' # Wildcard matching => no match, as the tag is absent |
a2719263fd04
test_study_series_find_inconsistency
Sebastien Jodogne <s.jodogne@gmail.com>
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diff
changeset
|
4965 }, |
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Sebastien Jodogne <s.jodogne@gmail.com>
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diff
changeset
|
4966 'Normalize' : False |
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Sebastien Jodogne <s.jodogne@gmail.com>
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diff
changeset
|
4967 })) |
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Sebastien Jodogne <s.jodogne@gmail.com>
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diff
changeset
|
4968 self.assertEqual(1, CountAnswers({ |
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Sebastien Jodogne <s.jodogne@gmail.com>
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diff
changeset
|
4969 'Level' : 'Study', |
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Sebastien Jodogne <s.jodogne@gmail.com>
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diff
changeset
|
4970 'Query' : { |
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diff
changeset
|
4971 'SeriesDescription' : 'THIS^VALUE^IS^WIPED^OUT' |
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|
4972 }, |
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diff
changeset
|
4973 'Normalize' : True |
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|
4974 })) |
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diff
changeset
|
4975 self.assertEqual(1, CountAnswers({ |
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diff
changeset
|
4976 'Level' : 'Study', |
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diff
changeset
|
4977 'Query' : { |
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changeset
|
4978 'SeriesDescription' : '*' # Matches, as wiped out by the normalization |
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|
4979 }, |
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changeset
|
4980 'Normalize' : True |
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|
4981 })) |
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diff
changeset
|
4982 |
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diff
changeset
|
4983 for normalize in [ True, False ]: |
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|
4984 # At the series level, the "SeriesDescription" tag is allowed, and |
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|
4985 # normalization has no effect |
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|
4986 |
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diff
changeset
|
4987 # "Universal matching" will match all entities, including |
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|
4988 # those with the missing tag |
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|
4989 # http://dicom.nema.org/medical/dicom/2019e/output/chtml/part04/sect_C.2.2.2.3.html |
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changeset
|
4990 self.assertEqual(1, CountAnswers({ |
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|
4991 'Level' : 'Series', |
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|
4992 'Query' : { |
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|
4993 'SeriesDescription' : '' # Universal matching |
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|
4994 }, |
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diff
changeset
|
4995 'Normalize' : normalize, |
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Sebastien Jodogne <s.jodogne@gmail.com>
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262
diff
changeset
|
4996 })) |
a2719263fd04
test_study_series_find_inconsistency
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
262
diff
changeset
|
4997 # "Universal matching" will match all entities, including |
a2719263fd04
test_study_series_find_inconsistency
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
262
diff
changeset
|
4998 # those with the missing tag |
a2719263fd04
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Sebastien Jodogne <s.jodogne@gmail.com>
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262
diff
changeset
|
4999 # http://dicom.nema.org/medical/dicom/2019e/output/chtml/part04/sect_C.2.2.2.3.html |
a2719263fd04
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Sebastien Jodogne <s.jodogne@gmail.com>
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262
diff
changeset
|
5000 self.assertEqual(1, CountAnswers({ |
a2719263fd04
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Sebastien Jodogne <s.jodogne@gmail.com>
parents:
262
diff
changeset
|
5001 'Level' : 'Series', |
a2719263fd04
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Sebastien Jodogne <s.jodogne@gmail.com>
parents:
262
diff
changeset
|
5002 'Query' : { |
a2719263fd04
test_study_series_find_inconsistency
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
262
diff
changeset
|
5003 'SeriesDescription' : '*' # Wildcard matching |
a2719263fd04
test_study_series_find_inconsistency
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
262
diff
changeset
|
5004 }, |
a2719263fd04
test_study_series_find_inconsistency
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
262
diff
changeset
|
5005 'Normalize' : normalize, |
a2719263fd04
test_study_series_find_inconsistency
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
262
diff
changeset
|
5006 })) |
a2719263fd04
test_study_series_find_inconsistency
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
262
diff
changeset
|
5007 self.assertEqual(1, CountAnswers({ |
a2719263fd04
test_study_series_find_inconsistency
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
262
diff
changeset
|
5008 'Level' : 'Series', |
a2719263fd04
test_study_series_find_inconsistency
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
262
diff
changeset
|
5009 'Query' : { |
a2719263fd04
test_study_series_find_inconsistency
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
262
diff
changeset
|
5010 'SeriesDescription' : '*model*' # The actual value is "STL model: intraop Report" |
a2719263fd04
test_study_series_find_inconsistency
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
262
diff
changeset
|
5011 }, |
a2719263fd04
test_study_series_find_inconsistency
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
262
diff
changeset
|
5012 'Normalize' : normalize, |
a2719263fd04
test_study_series_find_inconsistency
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
262
diff
changeset
|
5013 })) |
a2719263fd04
test_study_series_find_inconsistency
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
262
diff
changeset
|
5014 self.assertEqual(0, CountAnswers({ |
a2719263fd04
test_study_series_find_inconsistency
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
262
diff
changeset
|
5015 'Level' : 'Series', |
a2719263fd04
test_study_series_find_inconsistency
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
262
diff
changeset
|
5016 'Query' : { |
a2719263fd04
test_study_series_find_inconsistency
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
262
diff
changeset
|
5017 'SeriesDescription' : '*MISMATCHED^VALUE*' |
a2719263fd04
test_study_series_find_inconsistency
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
262
diff
changeset
|
5018 }, |
a2719263fd04
test_study_series_find_inconsistency
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
262
diff
changeset
|
5019 'Normalize' : normalize, |
a2719263fd04
test_study_series_find_inconsistency
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
262
diff
changeset
|
5020 })) |
a2719263fd04
test_study_series_find_inconsistency
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
262
diff
changeset
|
5021 |
a2719263fd04
test_study_series_find_inconsistency
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
262
diff
changeset
|
5022 # Universal matching matches any instance, even if the |
a2719263fd04
test_study_series_find_inconsistency
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
262
diff
changeset
|
5023 # query is at the study-level, and thus if "SeriesDescription" |
a2719263fd04
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Sebastien Jodogne <s.jodogne@gmail.com>
parents:
262
diff
changeset
|
5024 # makes no sense |
a2719263fd04
test_study_series_find_inconsistency
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
262
diff
changeset
|
5025 self.assertEqual(1, CountAnswers({ |
a2719263fd04
test_study_series_find_inconsistency
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
262
diff
changeset
|
5026 'Level' : 'Study', |
a2719263fd04
test_study_series_find_inconsistency
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
262
diff
changeset
|
5027 'Query' : { |
a2719263fd04
test_study_series_find_inconsistency
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
262
diff
changeset
|
5028 'SeriesDescription' : '' # Universal matching |
a2719263fd04
test_study_series_find_inconsistency
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
262
diff
changeset
|
5029 }, |
a2719263fd04
test_study_series_find_inconsistency
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
262
diff
changeset
|
5030 'Normalize' : normalize, |
a2719263fd04
test_study_series_find_inconsistency
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
262
diff
changeset
|
5031 })) |
a2719263fd04
test_study_series_find_inconsistency
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
262
diff
changeset
|
5032 |
a2719263fd04
test_study_series_find_inconsistency
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
262
diff
changeset
|
5033 |
a2719263fd04
test_study_series_find_inconsistency
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
262
diff
changeset
|
5034 |
a2719263fd04
test_study_series_find_inconsistency
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
262
diff
changeset
|
5035 ## |
a2719263fd04
test_study_series_find_inconsistency
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
262
diff
changeset
|
5036 ## "ProtocolName" is absent, and has VR "CS" => wildcard is allowed |
a2719263fd04
test_study_series_find_inconsistency
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
262
diff
changeset
|
5037 ## |
a2719263fd04
test_study_series_find_inconsistency
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
262
diff
changeset
|
5038 |
a2719263fd04
test_study_series_find_inconsistency
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
262
diff
changeset
|
5039 # At the study level, the "ProtocolName" tag is not allowed, but |
a2719263fd04
test_study_series_find_inconsistency
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
262
diff
changeset
|
5040 # is wiped out by the normalization |
a2719263fd04
test_study_series_find_inconsistency
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
262
diff
changeset
|
5041 self.assertEqual(0, CountAnswers({ |
a2719263fd04
test_study_series_find_inconsistency
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
262
diff
changeset
|
5042 'Level' : 'Study', |
a2719263fd04
test_study_series_find_inconsistency
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
262
diff
changeset
|
5043 'Query' : { |
a2719263fd04
test_study_series_find_inconsistency
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
262
diff
changeset
|
5044 'ProtocolName' : 'NOPE' |
a2719263fd04
test_study_series_find_inconsistency
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
262
diff
changeset
|
5045 }, |
a2719263fd04
test_study_series_find_inconsistency
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
262
diff
changeset
|
5046 'Normalize' : False |
a2719263fd04
test_study_series_find_inconsistency
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
262
diff
changeset
|
5047 })) |
a2719263fd04
test_study_series_find_inconsistency
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
262
diff
changeset
|
5048 self.assertEqual(0, CountAnswers({ |
a2719263fd04
test_study_series_find_inconsistency
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
262
diff
changeset
|
5049 'Level' : 'Study', |
a2719263fd04
test_study_series_find_inconsistency
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
262
diff
changeset
|
5050 'Query' : { |
a2719263fd04
test_study_series_find_inconsistency
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
262
diff
changeset
|
5051 'ProtocolName' : '*' # Wildcard matching => no match, as the tag is absent |
a2719263fd04
test_study_series_find_inconsistency
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
262
diff
changeset
|
5052 }, |
a2719263fd04
test_study_series_find_inconsistency
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
262
diff
changeset
|
5053 'Normalize' : False |
a2719263fd04
test_study_series_find_inconsistency
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
262
diff
changeset
|
5054 })) |
a2719263fd04
test_study_series_find_inconsistency
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
262
diff
changeset
|
5055 self.assertEqual(1, CountAnswers({ |
a2719263fd04
test_study_series_find_inconsistency
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
262
diff
changeset
|
5056 'Level' : 'Study', |
a2719263fd04
test_study_series_find_inconsistency
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
262
diff
changeset
|
5057 'Query' : { |
a2719263fd04
test_study_series_find_inconsistency
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
262
diff
changeset
|
5058 'ProtocolName' : 'THIS^VALUE^IS^WIPED^OUT' |
a2719263fd04
test_study_series_find_inconsistency
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
262
diff
changeset
|
5059 }, |
a2719263fd04
test_study_series_find_inconsistency
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
262
diff
changeset
|
5060 'Normalize' : True |
a2719263fd04
test_study_series_find_inconsistency
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
262
diff
changeset
|
5061 })) |
a2719263fd04
test_study_series_find_inconsistency
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
262
diff
changeset
|
5062 self.assertEqual(1, CountAnswers({ |
a2719263fd04
test_study_series_find_inconsistency
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
262
diff
changeset
|
5063 'Level' : 'Study', |
a2719263fd04
test_study_series_find_inconsistency
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
262
diff
changeset
|
5064 'Query' : { |
a2719263fd04
test_study_series_find_inconsistency
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
262
diff
changeset
|
5065 'ProtocolName' : '*' # Matches, as wiped out by the normalization |
a2719263fd04
test_study_series_find_inconsistency
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
262
diff
changeset
|
5066 }, |
a2719263fd04
test_study_series_find_inconsistency
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
262
diff
changeset
|
5067 'Normalize' : True |
a2719263fd04
test_study_series_find_inconsistency
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
262
diff
changeset
|
5068 })) |
a2719263fd04
test_study_series_find_inconsistency
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
262
diff
changeset
|
5069 |
a2719263fd04
test_study_series_find_inconsistency
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
262
diff
changeset
|
5070 for normalize in [ True, False ]: |
a2719263fd04
test_study_series_find_inconsistency
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
262
diff
changeset
|
5071 # At the series level, the "ProtocolName" tag is allowed, and |
a2719263fd04
test_study_series_find_inconsistency
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
262
diff
changeset
|
5072 # normalization has no effect |
a2719263fd04
test_study_series_find_inconsistency
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
262
diff
changeset
|
5073 |
a2719263fd04
test_study_series_find_inconsistency
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
262
diff
changeset
|
5074 self.assertEqual(1, CountAnswers({ |
a2719263fd04
test_study_series_find_inconsistency
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
262
diff
changeset
|
5075 'Level' : 'Series', |
a2719263fd04
test_study_series_find_inconsistency
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
262
diff
changeset
|
5076 'Query' : { |
a2719263fd04
test_study_series_find_inconsistency
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
262
diff
changeset
|
5077 'ProtocolName' : '' # Universal matching |
a2719263fd04
test_study_series_find_inconsistency
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
262
diff
changeset
|
5078 }, |
a2719263fd04
test_study_series_find_inconsistency
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
262
diff
changeset
|
5079 'Normalize' : normalize, |
a2719263fd04
test_study_series_find_inconsistency
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
262
diff
changeset
|
5080 })) |
a2719263fd04
test_study_series_find_inconsistency
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
262
diff
changeset
|
5081 self.assertEqual(0, CountAnswers({ |
a2719263fd04
test_study_series_find_inconsistency
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
262
diff
changeset
|
5082 'Level' : 'Series', |
a2719263fd04
test_study_series_find_inconsistency
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
262
diff
changeset
|
5083 'Query' : { |
a2719263fd04
test_study_series_find_inconsistency
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
262
diff
changeset
|
5084 'ProtocolName' : '*' # Wildcard matching => no match, as the tag is absent |
a2719263fd04
test_study_series_find_inconsistency
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
262
diff
changeset
|
5085 }, |
a2719263fd04
test_study_series_find_inconsistency
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
262
diff
changeset
|
5086 'Normalize' : normalize, |
a2719263fd04
test_study_series_find_inconsistency
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
262
diff
changeset
|
5087 })) |
a2719263fd04
test_study_series_find_inconsistency
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
262
diff
changeset
|
5088 self.assertEqual(0, CountAnswers({ |
a2719263fd04
test_study_series_find_inconsistency
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
262
diff
changeset
|
5089 'Level' : 'Series', |
a2719263fd04
test_study_series_find_inconsistency
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
262
diff
changeset
|
5090 'Query' : { |
a2719263fd04
test_study_series_find_inconsistency
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
262
diff
changeset
|
5091 'ProtocolName' : '*MISMATCHED^VALUE*' |
a2719263fd04
test_study_series_find_inconsistency
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
262
diff
changeset
|
5092 }, |
a2719263fd04
test_study_series_find_inconsistency
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
262
diff
changeset
|
5093 'Normalize' : normalize, |
a2719263fd04
test_study_series_find_inconsistency
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
262
diff
changeset
|
5094 })) |
a2719263fd04
test_study_series_find_inconsistency
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
262
diff
changeset
|
5095 |
a2719263fd04
test_study_series_find_inconsistency
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
262
diff
changeset
|
5096 self.assertEqual(1, CountAnswers({ |
a2719263fd04
test_study_series_find_inconsistency
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
262
diff
changeset
|
5097 'Level' : 'Study', |
a2719263fd04
test_study_series_find_inconsistency
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
262
diff
changeset
|
5098 'Query' : { |
a2719263fd04
test_study_series_find_inconsistency
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
262
diff
changeset
|
5099 'ProtocolName' : '' # Universal matching |
a2719263fd04
test_study_series_find_inconsistency
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
262
diff
changeset
|
5100 }, |
a2719263fd04
test_study_series_find_inconsistency
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
262
diff
changeset
|
5101 'Normalize' : normalize, |
a2719263fd04
test_study_series_find_inconsistency
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
262
diff
changeset
|
5102 })) |
a2719263fd04
test_study_series_find_inconsistency
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
262
diff
changeset
|
5103 |
a2719263fd04
test_study_series_find_inconsistency
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
262
diff
changeset
|
5104 |
a2719263fd04
test_study_series_find_inconsistency
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
262
diff
changeset
|
5105 ## |
a2719263fd04
test_study_series_find_inconsistency
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
262
diff
changeset
|
5106 ## "StudyInstanceUID" is present, and has VR "UI" => wildcard is not allowed |
a2719263fd04
test_study_series_find_inconsistency
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
262
diff
changeset
|
5107 ## |
a2719263fd04
test_study_series_find_inconsistency
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
262
diff
changeset
|
5108 |
a2719263fd04
test_study_series_find_inconsistency
Sebastien Jodogne <s.jodogne@gmail.com>
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262
diff
changeset
|
5109 for level in [ 'Study', 'Series' ] : |
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5110 for normalize in [ True, False ]: |
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5111 self.assertEqual(1, CountAnswers({ |
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5112 'Level' : level, |
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5113 'Query' : { |
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5114 'StudyInstanceUID' : '' # Universal matching |
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5115 }, |
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5116 'Normalize' : normalize, |
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5117 })) |
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5118 self.assertEqual(0, CountAnswers({ |
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5119 'Level' : level, |
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5120 'Query' : { |
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5121 'StudyInstanceUID' : 'MISMATCHED^VALUE' |
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5122 }, |
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5123 'Normalize' : normalize, |
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5124 })) |
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5125 self.assertEqual(1, CountAnswers({ |
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5126 'Level' : level, |
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5127 'Query' : { |
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5128 'StudyInstanceUID' : '4.5.6' # This is the actual value |
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5129 }, |
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5130 'Normalize' : normalize, |
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5131 })) |
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5132 |
269 | 5133 # Wildcard matching is not allowed for this VR |
263
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5134 # This test fails on Orthanc <= 1.5.8 |
269 | 5135 self.assertRaises(Exception, lambda: CountAnswers({ |
263
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5136 'Level' : level, |
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5137 'Query' : { |
269 | 5138 'StudyInstanceUID' : '*' |
263
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5139 }, |
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5140 'Normalize' : normalize, |
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5141 })) |
265 | 5142 |
5143 | |
5144 def test_rendered(self): | |
5145 # New in Orthanc 1.6.0 | |
5146 i = UploadInstance(_REMOTE, 'ColorTestMalaterre.dcm')['ID'] | |
5147 im = GetImage(_REMOTE, '/instances/%s/rendered' % i) | |
5148 self.assertEqual("RGB", im.mode) | |
5149 self.assertEqual(41, im.size[0]) | |
5150 self.assertEqual(41, im.size[1]) | |
5151 | |
5152 # http://effbot.org/zone/pil-comparing-images.htm | |
5153 truth = Image.open(GetDatabasePath('ColorTestMalaterre.png')) | |
5154 self.assertTrue(ImageChops.difference(im, truth).getbbox() is None) | |
5155 | |
5156 im = GetImage(_REMOTE, '/instances/%s/rendered?width=10' % i) | |
5157 self.assertEqual("RGB", im.mode) | |
5158 self.assertEqual(10, im.size[0]) | |
5159 self.assertEqual(10, im.size[1]) | |
5160 | |
5161 im = GetImage(_REMOTE, '/instances/%s/rendered?height=10' % i) | |
5162 self.assertEqual("RGB", im.mode) | |
5163 self.assertEqual(10, im.size[0]) | |
5164 self.assertEqual(10, im.size[1]) | |
5165 | |
5166 im = GetImage(_REMOTE, '/instances/%s/rendered?height=128' % i) | |
5167 self.assertEqual("RGB", im.mode) | |
5168 self.assertEqual(128, im.size[0]) | |
5169 self.assertEqual(128, im.size[1]) | |
5170 | |
5171 im = GetImage(_REMOTE, '/instances/%s/rendered?height=10&smooth=0' % i) | |
5172 self.assertEqual("RGB", im.mode) | |
5173 self.assertEqual(10, im.size[0]) | |
5174 self.assertEqual(10, im.size[1]) | |
5175 | |
5176 im = GetImage(_REMOTE, '/instances/%s/rendered?height=10&smooth=1' % i) | |
5177 self.assertEqual("RGB", im.mode) | |
5178 self.assertEqual(10, im.size[0]) | |
5179 self.assertEqual(10, im.size[1]) | |
5180 | |
5181 im = GetImage(_REMOTE, '/instances/%s/rendered?height=5&width=10' % i) | |
5182 self.assertEqual("RGB", im.mode) | |
5183 self.assertEqual(5, im.size[0]) | |
5184 self.assertEqual(5, im.size[1]) | |
5185 | |
5186 | |
5187 # Grayscale image | |
5188 i = UploadInstance(_REMOTE, 'Brainix/Flair/IM-0001-0001.dcm')['ID'] | |
5189 im = GetImage(_REMOTE, '/instances/%s/rendered' % i) | |
5190 self.assertEqual("L", im.mode) | |
5191 self.assertEqual(288, im.size[0]) | |
5192 self.assertEqual(288, im.size[1]) | |
5193 self.assertEqual(0, im.getpixel((0, 0))) | |
5194 | |
5195 # Those are the original windowing parameters that are written | |
5196 # inside the DICOM file | |
5197 im2 = GetImage(_REMOTE, '/instances/%s/rendered?window-center=248.009544468547&window-width=431.351843817788' % i) | |
5198 self.assertEqual("L", im2.mode) | |
5199 self.assertEqual(288, im2.size[0]) | |
5200 self.assertEqual(288, im2.size[1]) | |
5201 self.assertTrue(ImageChops.difference(im, im2).getbbox() is None) | |
5202 | |
5203 im = GetImage(_REMOTE, '/instances/%s/rendered?width=512&smooth=0' % i) | |
5204 self.assertEqual("L", im.mode) | |
5205 self.assertEqual(512, im.size[0]) | |
5206 self.assertEqual(512, im.size[1]) | |
5207 | |
5208 im = GetImage(_REMOTE, '/instances/%s/rendered?width=10&smooth=0' % i) | |
5209 self.assertEqual("L", im.mode) | |
5210 self.assertEqual(10, im.size[0]) | |
5211 self.assertEqual(10, im.size[1]) | |
5212 | |
5213 im = GetImage(_REMOTE, '/instances/%s/rendered?width=10&smooth=1' % i) | |
5214 self.assertEqual("L", im.mode) | |
5215 self.assertEqual(10, im.size[0]) | |
5216 self.assertEqual(10, im.size[1]) | |
5217 | |
5218 im = GetImage(_REMOTE, '/instances/%s/rendered?width=1&window-center=-1000' % i) | |
5219 self.assertEqual("L", im.mode) | |
5220 self.assertEqual(1, im.size[0]) | |
5221 self.assertEqual(1, im.size[1]) | |
5222 self.assertEqual(255, im.getpixel((0, 0))) | |
5223 | |
5224 im = GetImage(_REMOTE, '/instances/%s/rendered?width=1&window-center=1000' % i) | |
5225 self.assertEqual("L", im.mode) | |
5226 self.assertEqual(1, im.size[0]) | |
5227 self.assertEqual(1, im.size[1]) | |
5228 self.assertEqual(0, im.getpixel((0, 0))) | |
5229 | |
5230 | |
5231 # Test monochrome 1 | |
5232 i = UploadInstance(_REMOTE, 'Issue44/Monochrome1.dcm')['ID'] | |
5233 im = GetImage(_REMOTE, '/instances/%s/rendered' % i) | |
5234 self.assertEqual("L", im.mode) | |
5235 self.assertEqual(2010, im.size[0]) | |
5236 self.assertEqual(2446, im.size[1]) | |
5237 self.assertEqual(0, im.getpixel((0, 0))) | |
5238 im = GetImage(_REMOTE, '/instances/%s/rendered?width=20' % i) | |
5239 self.assertEqual("L", im.mode) | |
5240 self.assertEqual(20, im.size[0]) | |
5241 self.assertEqual(24, im.size[1]) | |
5242 im = GetImage(_REMOTE, '/instances/%s/rendered?height=24' % i) | |
5243 self.assertEqual("L", im.mode) | |
5244 self.assertEqual(20, im.size[0]) | |
5245 self.assertEqual(24, im.size[1]) | |
5246 im = GetImage(_REMOTE, '/instances/%s/rendered?width=10&height=24' % i) | |
5247 self.assertEqual("L", im.mode) | |
5248 self.assertEqual(10, im.size[0]) | |
5249 self.assertEqual(12, im.size[1]) | |
5250 im = GetImage(_REMOTE, '/instances/%s/rendered?width=40&height=24' % i) | |
5251 self.assertEqual("L", im.mode) | |
5252 self.assertEqual(20, im.size[0]) | |
5253 self.assertEqual(24, im.size[1]) | |
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5254 |
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5255 |
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5256 def test_bitbucket_issue_154(self): |
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5257 # "Matching against list of UID-s by C-MOVE" |
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5258 # https://bitbucket.org/sjodogne/orthanc/issues/154/ |
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5259 a = UploadInstance(_REMOTE, 'Issue154-d1.dcm') ['ID'] |
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5260 b = UploadInstance(_REMOTE, 'Issue154-d2.dcm') ['ID'] |
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5261 |
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5262 study = '1.2.826.0.1.3680043.8.498.35214236271657363033644818354280454731' |
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5263 series1 = '1.2.826.0.1.3680043.8.498.12243321927795467590791662266352305113' |
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5264 series2 = '1.2.826.0.1.3680043.8.498.43769499931624584079690260699536473555' |
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5265 |
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5266 # C-FIND is working on list of UIDs |
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5267 i = CallFindScu([ '-k', 'QueryRetrieveLevel=SERIES', |
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5268 '-k', 'StudyInstanceUID=%s' % study, |
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5269 '-k', 'SeriesInstanceUID=%s\\%s' % (series1, series2) ]) |
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5270 series = re.findall('\(0020,000e\).*?\[(.*?)\]', i) |
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5271 self.assertEqual(2, len(series)) |
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5272 self.assertTrue(series1 in series) |
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5273 self.assertTrue(series2 in series) |
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5274 |
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5275 # Individual retrieval is working in Orthanc < 1.6.0 |
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5276 self.assertEqual(0, len(DoGet(_LOCAL, '/instances'))) |
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5277 self.assertTrue(MonitorJob(_REMOTE, lambda: CallMoveScu([ |
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5278 '--study', '-k', 'QueryRetrieveLevel=SERIES', |
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5279 '-k', 'StudyInstanceUID=%s' % study, |
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5280 '-k', 'SeriesInstanceUID=%s' % series1, |
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5281 ]))) |
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5282 self.assertTrue(MonitorJob(_REMOTE, lambda: CallMoveScu([ |
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5283 '--study', '-k', 'QueryRetrieveLevel=SERIES', |
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5284 '-k', 'StudyInstanceUID=%s' % study, |
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5285 '-k', 'SeriesInstanceUID=%s' % series2, |
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5286 ]))) |
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5287 self.assertEqual(2, len(DoGet(_LOCAL, '/instances'))) |
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5288 |
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5289 DropOrthanc(_LOCAL) |
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5290 |
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5291 # But list matching is working only in Orthanc >= 1.6.0 |
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5292 self.assertEqual(0, len(DoGet(_LOCAL, '/instances'))) |
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5293 self.assertTrue(MonitorJob(_REMOTE, lambda: CallMoveScu([ |
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5294 '--study', '-k', 'QueryRetrieveLevel=SERIES', |
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5295 '-k', 'StudyInstanceUID=%s' % study, |
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5296 '-k', 'SeriesInstanceUID=%s\\%s' % (series1, series2), |
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5297 ]))) |
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5298 self.assertEqual(2, len(DoGet(_LOCAL, '/instances'))) |
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5299 |
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5300 |
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5301 def test_storage_commitment_api(self): |
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5302 # Storage commitment is available since Orthanc 1.6.0 |
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5303 |
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5304 def WaitTransaction(uid): |
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5305 while True: |
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5306 s = DoGet(_REMOTE, '/storage-commitment/%s' % uid) |
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5307 if s['Status'] != 'Pending': |
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5308 return s |
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5309 else: |
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|
5310 time.sleep(0.1) |
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5311 |
281 | 5312 instance = UploadInstance(_REMOTE, 'DummyCT.dcm') |
279
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5313 sopClassUid = '1.2.840.10008.5.1.4.1.1.4' |
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5314 sopInstanceUid = '1.2.840.113619.2.176.2025.1499492.7040.1171286242.109' |
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5315 |
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5316 # Against self |
281 | 5317 transaction = DoPost(_REMOTE, '/modalities/self/storage-commitment', { |
5318 "DicomInstances" : [ [ sopClassUid, sopInstanceUid ] ], | |
5319 }) ['ID'] | |
279
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5320 self.assertTrue(transaction.startswith('2.25.')) |
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5321 |
280
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5322 result = WaitTransaction(transaction) |
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5323 self.assertEqual('ORTHANC', result['RemoteAET']) |
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5324 self.assertEqual('Success', result['Status']) |
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5325 self.assertEqual(1, len(result['Success'])) |
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5326 self.assertEqual(0, len(result['Failures'])) |
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5327 self.assertEqual(sopClassUid, result['Success'][0]['SOPClassUID']) |
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5328 self.assertEqual(sopInstanceUid, result['Success'][0]['SOPInstanceUID']) |
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5329 |
281 | 5330 tmp = DoPost(_REMOTE, '/modalities/self/storage-commitment', { |
5331 "DicomInstances" : [ | |
5332 { 'SOPClassUID' : sopClassUid, | |
5333 'SOPInstanceUID' : sopInstanceUid }, | |
5334 ], | |
5335 }) | |
5336 self.assertEqual(tmp['Path'], '/storage-commitment/%s' % tmp['ID']) | |
5337 self.assertEqual(result, WaitTransaction(transaction)) | |
5338 | |
5339 tmp = DoPost(_REMOTE, '/modalities/self/storage-commitment', { | |
5340 "Resources" : [ | |
5341 instance['ID'], | |
5342 instance['ParentSeries'], | |
5343 instance['ParentStudy'], | |
5344 instance['ParentPatient'], | |
5345 ] | |
5346 }) | |
280
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5347 self.assertEqual(tmp['Path'], '/storage-commitment/%s' % tmp['ID']) |
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5348 self.assertEqual(result, WaitTransaction(transaction)) |
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|
5349 |
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5350 |
281 | 5351 transaction = DoPost(_REMOTE, '/modalities/self/storage-commitment', { |
5352 "DicomInstances" : [ | |
5353 [ 'nope', 'nope2' ], | |
5354 [ sopClassUid, sopInstanceUid ], | |
5355 ], | |
5356 }) ['ID'] | |
279
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5357 self.assertTrue(transaction.startswith('2.25.')) |
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5358 |
280
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5359 result = WaitTransaction(transaction) |
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|
5360 self.assertEqual('ORTHANC', result['RemoteAET']) |
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5361 self.assertEqual('Failure', result['Status']) |
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5362 self.assertEqual(1, len(result['Success'])) |
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|
5363 self.assertEqual(1, len(result['Failures'])) |
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5364 self.assertEqual(sopClassUid, result['Success'][0]['SOPClassUID']) |
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5365 self.assertEqual(sopInstanceUid, result['Success'][0]['SOPInstanceUID']) |
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5366 self.assertEqual('nope', result['Failures'][0]['SOPClassUID']) |
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5367 self.assertEqual('nope2', result['Failures'][0]['SOPInstanceUID']) |
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5368 self.assertEqual(274, result['Failures'][0]['FailureReason']) |
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|
5369 |
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5370 # Cannot remove items from a failed storage commitment transaction |
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|
5371 self.assertRaises(Exception, lambda: |
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|
5372 DoPost(_REMOTE, '/storage-commitment/%s/remove' % transaction)) |
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|
5373 |
279
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|
5374 |
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5375 # Against Orthanc 0.8.6, that does not support storage commitment |
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5376 self.assertRaises(Exception, lambda: |
281 | 5377 DoPost(_REMOTE, '/modalities/orthanctest/storage-commitment', { |
5378 "DicomInstances" : [ | |
5379 [ sopClassUid, sopInstanceUid ], | |
5380 ] | |
5381 })) | |
279
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5382 |
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|
5383 |
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|
5384 |
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|
5385 def test_storage_commitment_store(self): |
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5386 # Storage commitment is available since Orthanc 1.6.0 |
280
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|
5387 |
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|
5388 def WaitTransaction(uid): |
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5389 while True: |
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|
5390 s = DoGet(_REMOTE, '/storage-commitment/%s' % uid) |
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|
5391 if s['Status'] != 'Pending': |
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|
5392 return s |
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|
5393 else: |
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|
5394 time.sleep(0.1) |
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diff
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|
5395 |
279
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|
5396 i = UploadInstance(_REMOTE, 'DummyCT.dcm')['ID'] |
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5397 self.assertEqual(1, len(DoGet(_REMOTE, '/instances'))) |
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5398 self.assertEqual(0, len(DoGet(_LOCAL, '/instances'))) |
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|
5399 |
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|
5400 # The Orthanc 0.8.6 from "_LOCAL" does not support storage commitment |
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5401 self.assertRaises(Exception, lambda: DoPost(_REMOTE, '/modalities/orthanctest/store', { |
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5402 'Resources' : [ i ], |
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5403 'StorageCommitment' : True, |
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|
5404 })) |
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|
5405 |
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|
5406 j = DoPost(_REMOTE, '/modalities/orthanctest/store', { |
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5407 'Resources' : [ i ], |
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5408 'StorageCommitment' : False, |
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|
5409 }) |
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|
5410 self.assertEqual(1, len(DoGet(_LOCAL, '/instances'))) |
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|
5411 |
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5412 j = DoPost(_REMOTE, '/modalities/self/store', { |
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5413 'Resources' : [ i ], |
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5414 'StorageCommitment' : True, |
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|
5415 }) |
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|
5416 |
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5417 transaction = j['StorageCommitmentTransactionUID'] |
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5418 self.assertTrue(transaction.startswith('2.25.')) |
280
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|
5419 |
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|
5420 result = WaitTransaction(transaction) |
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5421 self.assertEqual('ORTHANC', result['RemoteAET']) |
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5422 self.assertEqual('Success', result['Status']) |
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5423 self.assertEqual(1, len(result['Success'])) |
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5424 self.assertEqual(0, len(result['Failures'])) |
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5425 self.assertEqual('1.2.840.10008.5.1.4.1.1.4', result['Success'][0]['SOPClassUID']) |
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|
5426 self.assertEqual('1.2.840.113619.2.176.2025.1499492.7040.1171286242.109', |
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|
5427 result['Success'][0]['SOPInstanceUID']) |
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|
5428 |
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|
5429 self.assertEqual(1, len(DoGet(_REMOTE, '/instances'))) |
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5430 DoPost(_REMOTE, '/storage-commitment/%s/remove' % transaction) |
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5431 self.assertEqual(0, len(DoGet(_REMOTE, '/instances'))) |
285
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5432 |
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5433 |
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5434 def test_store_straight(self): # New in Orthanc 1.6.1 |
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5435 self.assertEqual(0, len(DoGet(_LOCAL, '/instances'))) |
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5436 self.assertEqual(0, len(DoGet(_REMOTE, '/instances'))) |
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5437 |
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5438 with open(GetDatabasePath('DummyCT.dcm'), 'rb') as f: |
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5439 dicom = f.read() |
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5440 |
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5441 self.assertRaises(Exception, lambda: DoPost( |
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5442 _REMOTE, '/modalities/orthanctest/store-straight', 'nope', 'nope')) |
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5443 |
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5444 answer = DoPost(_REMOTE, '/modalities/orthanctest/store-straight', dicom, 'nope') |
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5445 |
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diff
changeset
|
5446 self.assertEqual('1.2.840.10008.5.1.4.1.1.4', |
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diff
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|
5447 answer['SOPClassUID']) |
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diff
changeset
|
5448 self.assertEqual('1.2.840.113619.2.176.2025.1499492.7040.1171286242.109', |
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diff
changeset
|
5449 answer['SOPInstanceUID']) |
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test_store_straight
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diff
changeset
|
5450 |
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281
diff
changeset
|
5451 self.assertEqual(1, len(DoGet(_LOCAL, '/instances'))) |
281a32ecc5c1
test_store_straight
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diff
changeset
|
5452 self.assertEqual(0, len(DoGet(_REMOTE, '/instances'))) |
289
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test_storescu_transcoding
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285
diff
changeset
|
5453 |
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test_storescu_transcoding
Sebastien Jodogne <s.jodogne@gmail.com>
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285
diff
changeset
|
5454 |
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test_storescu_transcoding
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285
diff
changeset
|
5455 def test_storescu_transcoding(self): # New in Orthanc 1.7.0 |
4a70411ac9ad
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diff
changeset
|
5456 # Add a RLE-encoded DICOM file |
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test_storescu_transcoding
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285
diff
changeset
|
5457 i = UploadInstance(_REMOTE, 'TransferSyntaxes/1.2.840.10008.1.2.5.dcm')['ID'] |
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test_storescu_transcoding
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diff
changeset
|
5458 self.assertEqual(0, len(DoGet(_LOCAL, '/instances'))) |
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test_storescu_transcoding
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diff
changeset
|
5459 self.assertEqual(1, len(DoGet(_REMOTE, '/instances'))) |
4a70411ac9ad
test_storescu_transcoding
Sebastien Jodogne <s.jodogne@gmail.com>
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285
diff
changeset
|
5460 rleSize = len(DoGet(_REMOTE, '/instances/%s/file' % i)) |
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test_storescu_transcoding
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285
diff
changeset
|
5461 |
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test_storescu_transcoding
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285
diff
changeset
|
5462 # Export the instance, with transcoding: "_REMOTE" is the |
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test_storescu_transcoding
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diff
changeset
|
5463 # Orthanc server being tested |
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test_storescu_transcoding
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diff
changeset
|
5464 try: |
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test_storescu_transcoding
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285
diff
changeset
|
5465 DoDelete(_REMOTE, '/modalities/toto') |
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test_storescu_transcoding
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285
diff
changeset
|
5466 except: |
4a70411ac9ad
test_storescu_transcoding
Sebastien Jodogne <s.jodogne@gmail.com>
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diff
changeset
|
5467 pass |
4a70411ac9ad
test_storescu_transcoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
285
diff
changeset
|
5468 |
4a70411ac9ad
test_storescu_transcoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
285
diff
changeset
|
5469 params = DoGet(_REMOTE, '/modalities?expand') ['orthanctest'] |
4a70411ac9ad
test_storescu_transcoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
285
diff
changeset
|
5470 DoPut(_REMOTE, '/modalities/toto', params) |
4a70411ac9ad
test_storescu_transcoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
285
diff
changeset
|
5471 DoPost(_REMOTE, '/modalities/toto/store', str(i), 'text/plain') |
4a70411ac9ad
test_storescu_transcoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
285
diff
changeset
|
5472 j = DoGet(_LOCAL, '/instances') |
4a70411ac9ad
test_storescu_transcoding
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parents:
285
diff
changeset
|
5473 self.assertEqual(1, len(j)) |
4a70411ac9ad
test_storescu_transcoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
285
diff
changeset
|
5474 uncompressedSize = len(DoGet(_LOCAL, '/instances/%s/file' % j[0])) |
4a70411ac9ad
test_storescu_transcoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
285
diff
changeset
|
5475 self.assertTrue(uncompressedSize > rleSize / 2) |
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test_storescu_transcoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
285
diff
changeset
|
5476 |
4a70411ac9ad
test_storescu_transcoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
285
diff
changeset
|
5477 # Export, with transcoding disabled => this fails |
4a70411ac9ad
test_storescu_transcoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
285
diff
changeset
|
5478 params['AllowTranscoding'] = False |
4a70411ac9ad
test_storescu_transcoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
285
diff
changeset
|
5479 DoPut(_REMOTE, '/modalities/toto', params) |
4a70411ac9ad
test_storescu_transcoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
285
diff
changeset
|
5480 self.assertRaises(Exception, lambda: DoPost(_REMOTE, '/modalities/toto/store', str(i), 'text/plain')) |
290
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test_bitbucket_issue_169
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
289
diff
changeset
|
5481 |
b5333f87065b
test_bitbucket_issue_169
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
289
diff
changeset
|
5482 |
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test_bitbucket_issue_169
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
289
diff
changeset
|
5483 def test_bitbucket_issue_169(self): |
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test_bitbucket_issue_169
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289
diff
changeset
|
5484 def GetTransferSyntax(dicom): |
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test_bitbucket_issue_169
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289
diff
changeset
|
5485 with tempfile.NamedTemporaryFile(delete = True) as f: |
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test_bitbucket_issue_169
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
289
diff
changeset
|
5486 f.write(dicom) |
b5333f87065b
test_bitbucket_issue_169
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
289
diff
changeset
|
5487 f.flush() |
b5333f87065b
test_bitbucket_issue_169
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
289
diff
changeset
|
5488 data = subprocess.check_output([ FindExecutable('dcm2xml'), f.name ]) |
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test_bitbucket_issue_169
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
289
diff
changeset
|
5489 |
b5333f87065b
test_bitbucket_issue_169
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
289
diff
changeset
|
5490 return re.search('<data-set xfer="(.*?)"', data).group(1) |
b5333f87065b
test_bitbucket_issue_169
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
289
diff
changeset
|
5491 |
b5333f87065b
test_bitbucket_issue_169
Sebastien Jodogne <s.jodogne@gmail.com>
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289
diff
changeset
|
5492 with open(GetDatabasePath('Issue169.dcm.bz2'), 'rb') as f: |
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test_bitbucket_issue_169
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289
diff
changeset
|
5493 dicom = bz2.decompress(f.read()) |
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test_bitbucket_issue_169
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289
diff
changeset
|
5494 |
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test_bitbucket_issue_169
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289
diff
changeset
|
5495 self.assertEqual('1.2.840.10008.1.2.1', GetTransferSyntax(dicom)) |
b5333f87065b
test_bitbucket_issue_169
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parents:
289
diff
changeset
|
5496 |
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test_bitbucket_issue_169
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diff
changeset
|
5497 self.assertEqual(44350560, len(dicom)) |
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test_bitbucket_issue_169
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289
diff
changeset
|
5498 i = DoPost(_REMOTE, '/instances', dicom, 'application/dicom') ['ID'] |
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test_bitbucket_issue_169
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parents:
289
diff
changeset
|
5499 |
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test_bitbucket_issue_169
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289
diff
changeset
|
5500 tags = DoGet(_REMOTE, '/instances/%s/tags' % i) |
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test_bitbucket_issue_169
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diff
changeset
|
5501 self.assertEqual('NORMAL', tags['1337,1001']['Value']) |
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test_bitbucket_issue_169
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parents:
289
diff
changeset
|
5502 |
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test_bitbucket_issue_169
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289
diff
changeset
|
5503 self.assertEqual(0, len(DoGet(_LOCAL, '/instances'))) |
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test_bitbucket_issue_169
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289
diff
changeset
|
5504 DoPost(_REMOTE, '/modalities/orthanctest/store', str(i), 'text/plain') |
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test_bitbucket_issue_169
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289
diff
changeset
|
5505 j = DoGet(_LOCAL, '/instances') |
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test_bitbucket_issue_169
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289
diff
changeset
|
5506 self.assertEqual(1, len(j)) |
b5333f87065b
test_bitbucket_issue_169
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parents:
289
diff
changeset
|
5507 |
b5333f87065b
test_bitbucket_issue_169
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
289
diff
changeset
|
5508 # In Orthanc <= 1.6.1, transfer syntax changed from "Explicit |
b5333f87065b
test_bitbucket_issue_169
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diff
changeset
|
5509 # VR Little Endian" (1.2.840.10008.1.2.1) to "Implicit VR |
b5333f87065b
test_bitbucket_issue_169
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diff
changeset
|
5510 # Little Endian" (1.2.840.10008.1.2) |
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test_bitbucket_issue_169
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diff
changeset
|
5511 self.assertEqual('1.2.840.10008.1.2.1', |
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test_bitbucket_issue_169
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289
diff
changeset
|
5512 GetTransferSyntax(DoGet(_LOCAL, '/instances/%s/file' % j[0]))) |
b5333f87065b
test_bitbucket_issue_169
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parents:
289
diff
changeset
|
5513 |
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test_bitbucket_issue_169
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parents:
289
diff
changeset
|
5514 # In Orthanc <= 1.6.1, the value of the private tags was lost |
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test_bitbucket_issue_169
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diff
changeset
|
5515 # because of this transcoding |
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test_bitbucket_issue_169
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289
diff
changeset
|
5516 tags = DoGet(_LOCAL, '/instances/%s/tags' % j[0]) |
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test_bitbucket_issue_169
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diff
changeset
|
5517 self.assertEqual('NORMAL', tags['1337,1001']['Value']) |