Mercurial > hg > orthanc-tests
annotate Tests/Tests.py @ 86:0401ef51f5c1
test_reconstruct_json
| author | Sebastien Jodogne <s.jodogne@gmail.com> |
|---|---|
| date | Mon, 07 Nov 2016 15:17:19 +0100 |
| parents | 3f2170efa8d2 |
| children | 4b24faec842b |
| rev | line source |
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| 22 | 1 #!/usr/bin/env python |
| 2 # -*- coding: utf-8 -*- | |
| 3 | |
| 4 | |
| 3 | 5 # Orthanc - A Lightweight, RESTful DICOM Store |
| 73 | 6 # Copyright (C) 2012-2016 Sebastien Jodogne, Medical Physics |
| 3 | 7 # Department, University Hospital of Liege, Belgium |
| 8 # | |
| 9 # This program is free software: you can redistribute it and/or | |
| 10 # modify it under the terms of the GNU General Public License as | |
| 11 # published by the Free Software Foundation, either version 3 of the | |
| 12 # License, or (at your option) any later version. | |
| 13 # | |
| 14 # This program is distributed in the hope that it will be useful, but | |
| 15 # WITHOUT ANY WARRANTY; without even the implied warranty of | |
| 16 # MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU | |
| 17 # General Public License for more details. | |
| 18 # | |
| 19 # You should have received a copy of the GNU General Public License | |
| 20 # along with this program. If not, see <http://www.gnu.org/licenses/>. | |
| 21 | |
| 22 | |
| 14 | 23 import tempfile |
| 3 | 24 import unittest |
| 36 | 25 import base64 |
| 3 | 26 |
| 11 | 27 from PIL import ImageChops |
| 3 | 28 from Toolbox import * |
| 13 | 29 from xml.dom import minidom |
| 3 | 30 |
| 31 _LOCAL = None | |
| 32 _REMOTE = None | |
| 33 | |
| 34 | |
| 35 def SetOrthancParameters(local, remote): | |
| 36 global _LOCAL, _REMOTE | |
| 37 _LOCAL = local | |
| 38 _REMOTE = remote | |
| 39 | |
| 40 | |
| 14 | 41 def ExtractDicomTags(rawDicom, tags): |
| 42 with tempfile.NamedTemporaryFile(delete = True) as f: | |
| 43 f.write(rawDicom) | |
| 44 f.flush() | |
| 45 | 45 data = subprocess.check_output([ FindExecutable('dcm2xml'), f.name ]) |
| 14 | 46 |
| 47 result = [] | |
| 48 for tag in tags: | |
| 49 match = re.search('<element[^>]+name="%s">([^>]*)</element>' % tag, data) | |
| 50 if match == None: | |
| 51 result.append('') | |
| 52 else: | |
| 53 result.append(match.group(1)) | |
| 54 | |
| 55 return result | |
| 56 | |
| 57 | |
| 15 | 58 def InstallLuaScript(path): |
| 59 with open(GetDatabasePath(path), 'r') as f: | |
| 60 DoPost(_REMOTE, '/tools/execute-script', f.read(), 'application/lua') | |
| 61 | |
| 62 | |
| 63 def UninstallLuaCallbacks(): | |
| 64 DoPost(_REMOTE, '/tools/execute-script', 'function OnStoredInstance() end', 'application/lua') | |
| 43 | 65 InstallLuaScript('Lua/TransferSyntaxEnable.lua') |
| 15 | 66 |
| 67 | |
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68 def CompareLists(a, b): |
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69 if len(a) != len(b): |
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70 return False |
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71 |
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72 for i in range(len(a)): |
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73 d = a[i] - b[i] |
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74 if abs(d) >= 0.51: # Add some tolerance for rounding errors |
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75 return False |
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76 |
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77 return True |
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78 |
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79 |
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80
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80 def CompareTags(a, b, tagsToIgnore): |
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81 for i in tagsToIgnore: |
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82 if i in a: |
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83 del a[i] |
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84 if i in b: |
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85 del b[i] |
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86 |
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87 return a == b |
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88 |
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89 |
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90 def CallFindScu(args): |
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91 p = subprocess.Popen([ FindExecutable('findscu'), |
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92 '-P', '-aec', _REMOTE['DicomAet'], '-aet', _LOCAL['DicomAet'], |
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93 _REMOTE['Server'], str(_REMOTE['DicomPort']) ] + args, |
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94 stderr=subprocess.PIPE) |
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95 return p.communicate()[1] |
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96 |
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97 |
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98 def CallMoveScu(args): |
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99 subprocess.check_call([ FindExecutable('movescu'), |
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100 '--move', _LOCAL['DicomAet'], # Target AET (i.e. storescp) |
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101 '--call', _REMOTE['DicomAet'], # Called AET (i.e. Orthanc) |
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102 '--aetitle', _LOCAL['DicomAet'], # Calling AET (i.e. storescp) |
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103 _REMOTE['Server'], str(_REMOTE['DicomPort']) ] + args, |
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104 stderr=subprocess.PIPE) |
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105 |
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106 |
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107 |
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108 def GenerateTestSequence(): |
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109 return [ |
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110 { |
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111 'StudyDescription': 'Hello^', |
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112 'ReferencedStudySequence' : [ |
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113 { |
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114 'StudyDescription': 'Toto', |
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115 }, |
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116 { |
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117 'StudyDescription': 'Tata', |
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118 }, |
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119 ] |
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120 }, |
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121 { |
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122 'StudyDescription': 'Sébastien^', |
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123 'StudyDate' : '19700202', |
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124 } |
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125 ] |
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126 |
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127 |
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128 |
| 15 | 129 |
| 3 | 130 class Orthanc(unittest.TestCase): |
| 131 def setUp(self): | |
| 83 | 132 if (sys.version_info >= (3, 0)): |
| 133 # Remove annoying warnings about unclosed socket in Python 3 | |
| 134 import warnings | |
| 135 warnings.simplefilter("ignore", ResourceWarning) | |
| 136 | |
| 3 | 137 DropOrthanc(_LOCAL) |
| 138 DropOrthanc(_REMOTE) | |
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139 UninstallLuaCallbacks() |
| 45 | 140 #print "In test", self._testMethodName |
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141 |
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142 def AssertSameImages(self, truth, url): |
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143 im = GetImage(_REMOTE, url) |
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144 self.assertTrue(CompareLists(truth, im.getdata())) |
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145 |
| 3 | 146 |
| 147 def test_system(self): | |
| 148 self.assertTrue('Version' in DoGet(_REMOTE, '/system')) | |
| 149 self.assertEqual('0', DoGet(_REMOTE, '/statistics')['TotalDiskSize']) | |
| 150 self.assertEqual('0', DoGet(_REMOTE, '/statistics')['TotalUncompressedSize']) | |
| 151 | |
| 152 def test_upload(self): | |
| 153 u = UploadInstance(_REMOTE, 'DummyCT.dcm') | |
| 154 self.assertEqual('Success', u['Status']) | |
| 155 u = UploadInstance(_REMOTE, 'DummyCT.dcm') | |
| 156 self.assertEqual('AlreadyStored', u['Status']) | |
| 157 self.assertEqual(1, len(DoGet(_REMOTE, '/patients'))) | |
| 158 self.assertEqual(1, len(DoGet(_REMOTE, '/studies'))) | |
| 159 self.assertEqual(1, len(DoGet(_REMOTE, '/series'))) | |
| 160 self.assertEqual(1, len(DoGet(_REMOTE, '/instances'))) | |
| 161 | |
| 162 i = DoGet(_REMOTE, '/instances/%s/simplified-tags' % u['ID']) | |
| 163 self.assertEqual('20070101', i['StudyDate']) | |
| 164 | |
| 165 | |
| 5 | 166 def test_upload_2(self): |
| 3 | 167 i = UploadInstance(_REMOTE, 'DummyCT.dcm')['ID'] |
| 168 instance = DoGet(_REMOTE, '/instances/%s' % i) | |
| 169 self.assertEqual(i, instance['ID']) | |
| 170 self.assertEqual('1.2.840.113619.2.176.2025.1499492.7040.1171286242.109', | |
| 171 instance['MainDicomTags']['SOPInstanceUID']) | |
| 172 | |
| 173 series = DoGet(_REMOTE, '/series/%s' % instance['ParentSeries']) | |
| 174 self.assertEqual('1.2.840.113619.2.176.2025.1499492.7391.1171285944.394', | |
| 175 series['MainDicomTags']['SeriesInstanceUID']) | |
| 176 | |
| 177 study = DoGet(_REMOTE, '/studies/%s' % series['ParentStudy']) | |
| 178 self.assertEqual('1.2.840.113619.2.176.2025.1499492.7391.1171285944.390', | |
| 179 study['MainDicomTags']['StudyInstanceUID']) | |
| 180 | |
| 181 patient = DoGet(_REMOTE, '/patients/%s' % study['ParentPatient']) | |
| 182 self.assertEqual('ozp00SjY2xG', | |
| 183 patient['MainDicomTags']['PatientID']) | |
| 184 | |
| 185 dicom = DoGet(_REMOTE, '/instances/%s/file' % instance['ID']) | |
| 186 self.assertEqual(2472, len(dicom)) | |
| 187 self.assertEqual('3e29b869978b6db4886355a2b1132124', ComputeMD5(dicom)) | |
| 188 self.assertEqual(1, len(DoGet(_REMOTE, '/instances/%s/frames' % i))) | |
| 189 self.assertEqual('TWINOW', DoGet(_REMOTE, '/instances/%s/simplified-tags' % i)['StationName']) | |
| 190 self.assertEqual('TWINOW', DoGet(_REMOTE, '/instances/%s/tags' % i)['0008,1010']['Value']) | |
| 191 | |
| 192 | |
| 5 | 193 def test_images(self): |
| 194 i = UploadInstance(_REMOTE, 'Phenix/IM-0001-0001.dcm')['ID'] | |
| 195 self.assertEqual(1, len(DoGet(_REMOTE, '/instances/%s/frames' % i))) | |
| 3 | 196 |
| 5 | 197 im = GetImage(_REMOTE, '/instances/%s/preview' % i) |
| 198 self.assertEqual("L", im.mode) | |
| 199 self.assertEqual(512, im.size[0]) | |
| 200 self.assertEqual(358, im.size[1]) | |
| 201 | |
| 202 im = GetImage(_REMOTE, '/instances/%s/image-uint8' % i) | |
| 203 self.assertEqual("L", im.mode) | |
| 204 self.assertEqual(512, im.size[0]) | |
| 205 self.assertEqual(358, im.size[1]) | |
| 206 | |
| 207 im = GetImage(_REMOTE, '/instances/%s/image-uint16' % i) | |
| 208 self.assertEqual(512, im.size[0]) | |
| 209 self.assertEqual(358, im.size[1]) | |
| 210 | |
| 211 im = GetImage(_REMOTE, '/instances/%s/frames/0/preview' % i) | |
| 212 self.assertEqual("L", im.mode) | |
| 213 self.assertEqual(512, im.size[0]) | |
| 214 self.assertEqual(358, im.size[1]) | |
| 215 | |
| 216 im = GetImage(_REMOTE, '/instances/%s/frames/0/image-uint8' % i) | |
| 217 self.assertEqual("L", im.mode) | |
| 218 self.assertEqual(512, im.size[0]) | |
| 219 self.assertEqual(358, im.size[1]) | |
| 220 | |
| 221 im = GetImage(_REMOTE, '/instances/%s/frames/0/image-uint16' % i) | |
| 222 self.assertEqual(512, im.size[0]) | |
| 223 self.assertEqual(358, im.size[1]) | |
| 64 | 224 |
| 225 # This is Little Endian Explicit | |
| 226 self.assertEqual('1.2.840.10008.1.2.1', DoGet(_REMOTE, '/instances/%s/header?simplify' % i)['TransferSyntaxUID']) | |
| 227 | |
| 6 | 228 |
| 229 def test_hierarchy(self): | |
| 230 UploadFolder(_REMOTE, 'Brainix/Epi') | |
| 231 UploadFolder(_REMOTE, 'Brainix/Flair') | |
| 232 UploadFolder(_REMOTE, 'Knee/T1') | |
| 233 UploadFolder(_REMOTE, 'Knee/T2') | |
| 234 | |
| 235 p = DoGet(_REMOTE, '/patients') | |
| 236 s = DoGet(_REMOTE, '/studies') | |
| 237 t = DoGet(_REMOTE, '/series') | |
| 238 self.assertEqual(2, len(p)) | |
| 239 self.assertEqual(2, len(s)) | |
| 240 self.assertEqual(4, len(t)) | |
| 241 self.assertEqual(94, len(DoGet(_REMOTE, '/instances'))) | |
| 242 | |
| 243 brainixPatient = '16738bc3-e47ed42a-43ce044c-a3414a45-cb069bd0' | |
| 244 brainixStudy = '27f7126f-4f66fb14-03f4081b-f9341db2-53925988' | |
| 245 brainixEpi = '2ac1316d-3e432022-62eabff2-c59f5475-9b1ac3f8' | |
| 246 brainixFlair = '1e2c125c-411b8e86-3f4fe68e-a7584dd3-c6da78f0' | |
| 247 | |
| 248 kneePatient = 'ca29faea-b6a0e17f-067743a1-8b778011-a48b2a17' | |
| 249 kneeStudy = '0a9b3153-2512774b-2d9580de-1fc3dcf6-3bd83918' | |
| 250 kneeT1 = '6de73705-c4e65c1b-9d9ea1b5-cabcd8e7-f15e4285' | |
| 251 kneeT2 = 'bbf7a453-0d34251a-03663b55-46bb31b9-ffd74c59' | |
| 252 | |
| 253 self.assertTrue(brainixPatient in p) | |
| 254 self.assertTrue(kneePatient in p) | |
| 255 self.assertTrue(brainixStudy in s) | |
| 256 self.assertTrue(kneeStudy in s) | |
| 257 self.assertTrue(brainixEpi in t) | |
| 258 self.assertTrue(brainixFlair in t) | |
| 259 self.assertTrue(kneeT1 in t) | |
| 260 self.assertTrue(kneeT2 in t) | |
| 261 | |
| 262 self.assertEqual(44, len(DoGet(_REMOTE, '/patients/%s/instances' % brainixPatient))) | |
| 263 self.assertEqual(2, len(DoGet(_REMOTE, '/patients/%s/series' % brainixPatient))) | |
| 264 self.assertEqual(1, len(DoGet(_REMOTE, '/patients/%s/studies' % brainixPatient))) | |
| 265 | |
| 266 self.assertEqual(50, len(DoGet(_REMOTE, '/patients/%s/instances' % kneePatient))) | |
| 267 self.assertEqual(2, len(DoGet(_REMOTE, '/patients/%s/series' % kneePatient))) | |
| 268 self.assertEqual(1, len(DoGet(_REMOTE, '/patients/%s/studies' % kneePatient))) | |
| 269 | |
| 270 self.assertEqual(2, len(DoGet(_REMOTE, '/studies/%s/series' % brainixStudy))) | |
| 271 self.assertEqual(44, len(DoGet(_REMOTE, '/studies/%s/instances' % brainixStudy))) | |
| 272 | |
| 273 self.assertEqual(2, len(DoGet(_REMOTE, '/studies/%s/series' % kneeStudy))) | |
| 274 self.assertEqual(50, len(DoGet(_REMOTE, '/studies/%s/instances' % kneeStudy))) | |
| 275 | |
| 276 self.assertEqual(22, len(DoGet(_REMOTE, '/series/%s/instances' % brainixEpi))) | |
| 277 self.assertEqual(22, len(DoGet(_REMOTE, '/series/%s/instances' % brainixFlair))) | |
| 278 self.assertEqual(24, len(DoGet(_REMOTE, '/series/%s/instances' % kneeT1))) | |
| 279 self.assertEqual(26, len(DoGet(_REMOTE, '/series/%s/instances' % kneeT2))) | |
| 280 | |
| 281 for patient in p: | |
| 282 for study in DoGet(_REMOTE, '/patients/%s/studies' % patient): | |
| 283 self.assertEqual(patient, study['ParentPatient']) | |
| 284 for series in DoGet(_REMOTE, '/studies/%s/series' % study['ID']): | |
| 285 self.assertEqual(study['ID'], series['ParentStudy']) | |
| 286 for instance in DoGet(_REMOTE, '/series/%s/instances' % series['ID']): | |
| 287 self.assertEqual(series['ID'], instance['ParentSeries']) | |
| 288 | |
| 289 self.assertEqual(json.dumps(DoGet(_REMOTE, '/instances/%s/attachments/dicom-as-json/data' % instance['ID'])), | |
| 290 json.dumps(DoGet(_REMOTE, '/instances/%s/tags' % instance['ID']))) | |
| 291 | |
| 292 | |
| 293 r = DoDelete(_REMOTE, "/studies/%s" % brainixStudy)['RemainingAncestor'] | |
| 294 self.assertEqual(1, len(DoGet(_REMOTE, '/patients'))) | |
| 295 self.assertEqual(1, len(DoGet(_REMOTE, '/studies'))) | |
| 296 self.assertEqual(2, len(DoGet(_REMOTE, '/series'))) | |
| 297 self.assertEqual(50, len(DoGet(_REMOTE, '/instances'))) | |
| 298 self.assertEqual(None, r) | |
| 299 | |
| 300 r = DoDelete(_REMOTE, "/series/%s" % kneeT2)['RemainingAncestor'] | |
| 301 self.assertEqual(1, len(DoGet(_REMOTE, '/patients'))) | |
| 302 self.assertEqual(1, len(DoGet(_REMOTE, '/studies'))) | |
| 303 self.assertEqual(1, len(DoGet(_REMOTE, '/series'))) | |
| 304 self.assertEqual(24, len(DoGet(_REMOTE, '/instances'))) | |
| 305 self.assertEqual('Study', r['Type']) | |
| 306 self.assertEqual(kneeStudy, r['ID']) | |
| 307 | |
| 308 r = DoDelete(_REMOTE, "/instances/%s" % DoGet(_REMOTE, '/instances')[0])['RemainingAncestor'] | |
| 309 self.assertEqual(1, len(DoGet(_REMOTE, '/patients'))) | |
| 310 self.assertEqual(1, len(DoGet(_REMOTE, '/studies'))) | |
| 311 self.assertEqual(1, len(DoGet(_REMOTE, '/series'))) | |
| 312 self.assertEqual(23, len(DoGet(_REMOTE, '/instances'))) | |
| 313 self.assertEqual('Series', r['Type']) | |
| 314 self.assertEqual(kneeT1, r['ID']) | |
| 315 | |
| 316 r = DoDelete(_REMOTE, "/patients/%s" % kneePatient)['RemainingAncestor'] | |
| 317 self.assertEqual(0, len(DoGet(_REMOTE, '/patients'))) | |
| 318 self.assertEqual(0, len(DoGet(_REMOTE, '/studies'))) | |
| 319 self.assertEqual(0, len(DoGet(_REMOTE, '/series'))) | |
| 320 self.assertEqual(0, len(DoGet(_REMOTE, '/instances'))) | |
| 321 self.assertEqual(None, r) | |
| 322 | |
| 323 DropOrthanc(_REMOTE) | |
| 324 self.assertEqual('0', DoGet(_REMOTE, '/statistics')['TotalDiskSize']) | |
| 325 self.assertEqual('0', DoGet(_REMOTE, '/statistics')['TotalUncompressedSize']) | |
| 7 | 326 |
| 327 | |
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328 def test_multiframe(self): |
| 7 | 329 i = UploadInstance(_REMOTE, 'Multiframe.dcm')['ID'] |
| 330 self.assertEqual(76, len(DoGet(_REMOTE, '/instances/%s/frames' % i))) | |
| 331 | |
| 332 im = GetImage(_REMOTE, '/instances/%s/frames/0/preview' % i) | |
| 333 self.assertEqual("L", im.mode) | |
| 334 self.assertEqual(512, im.size[0]) | |
| 335 self.assertEqual(512, im.size[1]) | |
| 336 | |
| 337 DoGet(_REMOTE, '/instances/%s/frames/0/image-uint8' % i) | |
| 338 DoGet(_REMOTE, '/instances/%s/frames/0/image-uint16' % i) | |
| 339 DoGet(_REMOTE, '/instances/%s/frames/75/preview' % i) | |
| 340 self.assertRaises(Exception, lambda: DoGet(_REMOTE, '/instances/%s/frames/aaa/preview' % i)) | |
| 341 self.assertRaises(Exception, lambda: DoGet(_REMOTE, '/instances/%s/frames/76/preview' % i)) | |
| 342 | |
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343 |
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344 def test_changes(self): |
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345 # Check emptiness |
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346 c = DoGet(_REMOTE, '/changes') |
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347 self.assertEqual(0, len(c['Changes'])) |
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348 self.assertEqual(0, c['Last']) |
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349 self.assertTrue(c['Done']) |
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350 c = DoGet(_REMOTE, '/changes?last') |
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351 self.assertEqual(0, len(c['Changes'])) |
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352 self.assertEqual(0, c['Last']) |
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353 self.assertTrue(c['Done']) |
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354 |
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355 # Add 1 instance |
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356 i = UploadInstance(_REMOTE, 'Brainix/Flair/IM-0001-0001.dcm')['ID'] |
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357 c = DoGet(_REMOTE, '/changes') |
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358 begin = c['Last'] |
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359 self.assertEqual(4, len(c['Changes'])) |
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360 self.assertTrue(c['Done']) |
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361 self.assertEqual(c['Changes'][-1]['Seq'], c['Last']) |
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362 |
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363 c = DoGet(_REMOTE, '/changes?last') |
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364 self.assertEqual(1, len(c['Changes'])) |
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365 self.assertEqual(begin, c['Last']) |
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366 self.assertTrue(c['Done']) |
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367 c = DoGet(_REMOTE, '/changes?limit=1&since=' + str(begin - 1)) |
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368 self.assertEqual(1, len(c['Changes'])) |
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369 self.assertEqual(begin, c['Last']) |
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370 self.assertTrue(c['Done']) |
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371 c = DoGet(_REMOTE, '/changes?limit=1&since=' + str(begin - 2)) |
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372 self.assertEqual(1, len(c['Changes'])) |
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373 self.assertEqual(begin - 1, c['Last']) |
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374 self.assertFalse(c['Done']) |
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375 c = DoGet(_REMOTE, '/changes?limit=1&since=' + str(begin - 3)) |
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376 self.assertEqual(1, len(c['Changes'])) |
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377 self.assertEqual(begin - 2, c['Last']) |
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378 self.assertFalse(c['Done']) |
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379 |
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380 UploadFolder(_REMOTE, 'Knee/T1') |
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381 UploadFolder(_REMOTE, 'Knee/T2') |
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382 since = begin |
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383 countPatients = 0 |
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384 countStudies = 0 |
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385 countSeries = 0 |
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386 countInstances = 0 |
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387 completed = 0 |
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388 while True: |
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389 c = DoGet(_REMOTE, '/changes', { 'since' : since, 'limit' : 3 }) |
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390 since = c['Last'] |
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391 for i in c['Changes']: |
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392 if i['ResourceType'] == 'Instance': |
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393 countInstances += 1 |
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394 if i['ResourceType'] == 'Patient': |
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395 countPatients += 1 |
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396 if i['ResourceType'] == 'Study': |
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397 countStudies += 1 |
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398 if i['ResourceType'] == 'Series': |
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399 countSeries += 1 |
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400 if i['ChangeType'] == 'NewInstance': |
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401 countInstances += 1 |
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402 if i['ChangeType'] == 'NewPatient': |
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403 countPatients += 1 |
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404 if i['ChangeType'] == 'NewStudy': |
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405 countStudies += 1 |
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406 if i['ChangeType'] == 'NewSeries': |
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407 countSeries += 1 |
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408 if i['ChangeType'] == 'CompletedSeries': |
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409 completed += 1 |
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410 self.assertTrue('ID' in i) |
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411 self.assertTrue('Path' in i) |
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412 self.assertTrue('Seq' in i) |
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413 if c['Done']: |
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414 break |
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415 |
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416 self.assertEqual(2 * 50, countInstances) |
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417 self.assertEqual(2 * 1, countPatients) |
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418 self.assertEqual(2 * 1, countStudies) |
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419 self.assertEqual(2 * 2, countSeries) |
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420 self.assertEqual(0, completed) |
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421 |
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422 |
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423 def test_archive(self): |
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424 UploadInstance(_REMOTE, 'Knee/T1/IM-0001-0001.dcm') |
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425 UploadInstance(_REMOTE, 'Knee/T2/IM-0001-0001.dcm') |
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426 |
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427 z = GetArchive(_REMOTE, '/patients/%s/archive' % DoGet(_REMOTE, '/patients')[0]) |
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428 self.assertEqual(2, len(z.namelist())) |
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429 |
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430 z = GetArchive(_REMOTE, '/studies/%s/archive' % DoGet(_REMOTE, '/studies')[0]) |
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431 self.assertEqual(2, len(z.namelist())) |
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432 |
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433 z = GetArchive(_REMOTE, '/series/%s/archive' % DoGet(_REMOTE, '/series')[0]) |
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434 self.assertEqual(1, len(z.namelist())) |
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435 |
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436 UploadInstance(_REMOTE, 'Brainix/Flair/IM-0001-0001.dcm') |
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437 |
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438 z = GetArchive(_REMOTE, '/patients/%s/archive' % DoGet(_REMOTE, '/patients')[0]) |
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439 self.assertEqual(2, len(z.namelist())) |
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440 |
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441 |
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442 def test_media_archive(self): |
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443 UploadInstance(_REMOTE, 'Knee/T1/IM-0001-0001.dcm') |
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444 UploadInstance(_REMOTE, 'Knee/T2/IM-0001-0001.dcm') |
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445 |
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446 z = GetArchive(_REMOTE, '/patients/%s/media' % DoGet(_REMOTE, '/patients')[0]) |
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447 self.assertEqual(3, len(z.namelist())) |
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448 self.assertTrue('IMAGES/IM0' in z.namelist()) |
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449 self.assertTrue('IMAGES/IM1' in z.namelist()) |
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450 self.assertTrue('DICOMDIR' in z.namelist()) |
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451 |
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452 try: |
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453 os.remove('/tmp/DICOMDIR') |
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454 except: |
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455 # The file does not exist |
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456 pass |
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457 |
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458 z.extract('DICOMDIR', '/tmp') |
| 45 | 459 a = subprocess.check_output([ FindExecutable('dciodvfy'), '/tmp/DICOMDIR' ], |
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460 stderr = subprocess.STDOUT).split('\n') |
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461 self.assertEqual(3, len(a)) |
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462 self.assertTrue(a[0].startswith('Warning')) |
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463 self.assertEqual('BasicDirectory', a[1]) |
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464 self.assertEqual('', a[2]) |
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465 |
| 45 | 466 a = subprocess.check_output([ FindExecutable('dcentvfy'), '/tmp/DICOMDIR' ], |
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467 stderr = subprocess.STDOUT).split('\n') |
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468 self.assertEqual(1, len(a)) |
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469 self.assertEqual('', a[0]) |
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470 |
| 45 | 471 a = subprocess.check_output([ FindExecutable('dcm2xml'), '/tmp/DICOMDIR' ]) |
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472 self.assertTrue(re.search('1.3.46.670589.11.17521.5.0.3124.2008081908590448738', a) != None) |
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473 self.assertTrue(re.search('1.3.46.670589.11.17521.5.0.3124.2008081909113806560', a) != None) |
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474 |
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475 os.remove('/tmp/DICOMDIR') |
| 10 | 476 |
| 477 | |
| 478 def test_protection(self): | |
| 479 UploadInstance(_REMOTE, 'Knee/T1/IM-0001-0001.dcm') | |
| 480 UploadInstance(_REMOTE, 'Brainix/Flair/IM-0001-0001.dcm') | |
| 481 self.assertEqual(2, len(DoGet(_REMOTE, '/patients'))) | |
| 482 a = DoGet(_REMOTE, '/patients')[0] | |
| 483 b = DoGet(_REMOTE, '/patients')[1] | |
| 484 self.assertEqual(0, DoGet(_REMOTE, '/patients/%s/protected' % a)) | |
| 485 DoPut(_REMOTE, '/patients/%s/protected' % a, '0', 'text/plain') | |
| 486 self.assertEqual(0, DoGet(_REMOTE, '/patients/%s/protected' % a)) | |
| 487 DoPut(_REMOTE, '/patients/%s/protected' % a, '1', 'text/plain') | |
| 488 self.assertEqual(1, DoGet(_REMOTE, '/patients/%s/protected' % a)) | |
| 489 DoPut(_REMOTE, '/patients/%s/protected' % a, '0', 'text/plain') | |
| 490 self.assertEqual(0, DoGet(_REMOTE, '/patients/%s/protected' % a)) | |
| 491 | |
| 492 | |
| 12 | 493 def test_raw_tags(self): |
| 10 | 494 i = UploadInstance(_REMOTE, 'PrivateTags.dcm')['ID'] |
| 495 | |
| 496 dicom = DoGet(_REMOTE, '/instances/%s/file' % i) | |
| 497 self.assertEqual('1a7c56cb02d6e742cc9c856a8ac182e3', ComputeMD5(dicom)) | |
| 498 | |
| 499 s = '/instances/%s/content/' % i | |
| 500 | |
| 501 self.assertEqual('LOGIQBOOK', DoGet(_REMOTE, s + '0008-1010').strip()) | |
| 502 self.assertRaises(Exception, lambda: DoGet(_REMOTE, s + '0008-1011')) | |
| 503 | |
| 504 self.assertEqual('Abdomen', DoGet(_REMOTE, s + '7fe1-1001/0/7fe1-1008/0/7fe1-1057').strip()) | |
| 505 self.assertEqual('cla_3c', DoGet(_REMOTE, s + '7fe1-1001/0/7fe1-1008/8/7fe1-1057').strip()) | |
| 506 | |
| 507 UploadInstance(_REMOTE, 'Brainix/Epi/IM-0001-0001.dcm') | |
| 508 UploadInstance(_REMOTE, 'Brainix/Flair/IM-0001-0001.dcm') | |
| 509 UploadInstance(_REMOTE, 'Knee/T1/IM-0001-0001.dcm') | |
| 510 UploadInstance(_REMOTE, 'Knee/T2/IM-0001-0001.dcm') | |
| 511 | |
| 512 for i in DoGet(_REMOTE, '/instances'): | |
| 513 aid = DoGet(_REMOTE, '/instances/%s' % i)['MainDicomTags']['SOPInstanceUID'] | |
| 514 self.assertEqual(aid, DoGet(_REMOTE, '/instances/%s/content/0008-0018' % i).replace(chr(0), '')) | |
| 515 | |
| 516 | |
| 517 def test_raw_tags_mdn(self): | |
| 518 # Bug reported by Cyril Paulus | |
| 519 i = UploadInstance(_REMOTE, 'PrivateMDNTags.dcm')['ID'] | |
| 520 self.assertAlmostEqual(0.000027, DoGet(_REMOTE, '/instances/%s/content/7053-1000' % i)) | |
| 521 | |
| 522 | |
| 523 def test_modify_instance(self): | |
| 524 i = UploadInstance(_REMOTE, 'PrivateTags.dcm')['ID'] | |
| 525 modified = DoPost(_REMOTE, '/instances/%s/modify' % i, | |
| 526 json.dumps({ | |
| 527 "Replace" : { | |
| 528 "PatientName" : "hello", | |
| 529 #"PatientID" : "world" | |
| 530 }, | |
| 531 "Remove" : [ "StationName" ], | |
| 532 "RemovePrivateTags" : None | |
| 533 }), | |
| 534 'application/json') | |
| 535 j = DoPost(_REMOTE, '/instances', modified, 'application/dicom')['ID'] | |
| 536 | |
| 537 self.assertNotEqual('hello', DoGet(_REMOTE, '/instances/%s/content/0010-0010' % i).strip()) | |
| 538 #self.assertNotEqual('world', DoGet(_REMOTE, '/instances/%s/content/0010-0020' % i).strip()) | |
| 83 | 539 self.assertEqual('LOGIQBOOK', DoGet(_REMOTE, '/instances/%s/content/0008-1010' % i).strip()) |
| 10 | 540 DoGet(_REMOTE, '/instances/%s/content/6003-1010' % i) # Some private tag |
| 541 | |
| 542 self.assertEqual('hello', DoGet(_REMOTE, '/instances/%s/content/0010-0010' % j).strip()) | |
| 543 #self.assertEqual('world', DoGet(_REMOTE, '/instances/%s/content/0010-0020' % j).strip()) | |
| 544 self.assertRaises(Exception, lambda: DoGet(_REMOTE, '/instances/%s/content/0008-1010' % j)) | |
| 545 self.assertRaises(Exception, lambda: DoGet(_REMOTE, '/instances/%s/content/6003-1010' % j)) | |
| 546 | |
| 547 | |
| 548 def test_modify_series(self): | |
| 549 # Upload 4 images from the same series | |
| 550 for i in range(4): | |
| 551 UploadInstance(_REMOTE, 'Brainix/Epi/IM-0001-000%d.dcm' % (i + 1)) | |
| 552 | |
| 553 origSeries = DoGet(_REMOTE, '/series')[0] | |
| 554 newSeries = DoPost(_REMOTE, '/series/%s/modify' % origSeries, | |
| 555 '{"Replace":{"PatientName":"Jodogne"}}', | |
| 556 'application/json')['ID'] | |
| 557 | |
| 558 self.assertEqual(origSeries, DoGet(_REMOTE, '/series/%s' % newSeries)['ModifiedFrom']) | |
| 559 instances = DoGet(_REMOTE, '/series/%s' % newSeries)['Instances'] | |
| 560 self.assertEqual(4, len(instances)) | |
| 561 for i in instances: | |
| 562 j = DoGet(_REMOTE, '/instances/%s' % i)['ModifiedFrom'] | |
| 563 self.assertEqual(newSeries, DoGet(_REMOTE, '/instances/%s' % i)['ParentSeries']) | |
| 564 self.assertEqual(origSeries, DoGet(_REMOTE, '/instances/%s' % j)['ParentSeries']) | |
| 565 | |
| 566 self.assertEqual('Jodogne', DoGet(_REMOTE, '/instances/%s/content/0010-0010' % i).strip()) | |
| 567 self.assertNotEqual('Jodogne', DoGet(_REMOTE, '/instances/%s/content/0010-0010' % j).strip()) | |
| 568 | |
| 569 | |
| 570 def test_modify_study(self): | |
| 571 # Upload 4 images from the 2 series of the same study | |
| 572 for i in range(4): | |
| 573 UploadInstance(_REMOTE, 'Brainix/Flair/IM-0001-000%d.dcm' % (i + 1)) | |
| 574 UploadInstance(_REMOTE, 'Brainix/Epi/IM-0001-000%d.dcm' % (i + 1)) | |
| 575 | |
| 576 origStudy = DoGet(_REMOTE, '/studies')[0] | |
| 577 newStudy = DoPost(_REMOTE, '/studies/%s/modify' % origStudy, | |
| 578 '{"Replace":{"PatientName":"Jodogne"}}', | |
| 579 'application/json')['ID'] | |
| 580 | |
| 581 self.assertEqual(origStudy, DoGet(_REMOTE, '/studies/%s' % newStudy)['ModifiedFrom']) | |
| 582 series = DoGet(_REMOTE, '/studies/%s' % newStudy)['Series'] | |
| 583 self.assertEqual(2, len(series)) | |
| 584 for s in series: | |
| 585 ss = DoGet(_REMOTE, '/series/%s' % s)['ModifiedFrom'] | |
| 586 self.assertEqual(newStudy, DoGet(_REMOTE, '/series/%s' % s)['ParentStudy']) | |
| 587 self.assertEqual(origStudy, DoGet(_REMOTE, '/series/%s' % ss)['ParentStudy']) | |
| 588 | |
| 589 instances = DoGet(_REMOTE, '/series/%s' % s)['Instances'] | |
| 590 for i in instances: | |
| 591 j = DoGet(_REMOTE, '/instances/%s' % i)['ModifiedFrom'] | |
| 592 self.assertEqual(s, DoGet(_REMOTE, '/instances/%s' % i)['ParentSeries']) | |
| 593 self.assertEqual(ss, DoGet(_REMOTE, '/instances/%s' % j)['ParentSeries']) | |
| 594 | |
| 595 self.assertEqual('Jodogne', DoGet(_REMOTE, '/instances/%s/content/0010-0010' % i).strip()) | |
| 596 self.assertNotEqual('Jodogne', DoGet(_REMOTE, '/instances/%s/content/0010-0010' % j).strip()) | |
| 597 | |
| 598 | |
| 599 def test_anonymize_series(self): | |
| 600 # Upload 4 images from the same series | |
| 601 for i in range(4): | |
| 602 UploadInstance(_REMOTE, 'Brainix/Epi/IM-0001-000%d.dcm' % (i + 1)) | |
| 603 | |
| 604 origSeries = DoGet(_REMOTE, '/series')[0] | |
| 605 newSeries = DoPost(_REMOTE, '/series/%s/anonymize' % origSeries, | |
| 606 '{}', | |
| 607 'application/json')['ID'] | |
| 608 | |
| 609 self.assertEqual(origSeries, DoGet(_REMOTE, '/series/%s' % newSeries)['AnonymizedFrom']) | |
| 610 instances = DoGet(_REMOTE, '/series/%s' % newSeries)['Instances'] | |
| 611 self.assertEqual(4, len(instances)) | |
| 612 for i in instances: | |
| 613 j = DoGet(_REMOTE, '/instances/%s' % i)['AnonymizedFrom'] | |
| 614 self.assertEqual(newSeries, DoGet(_REMOTE, '/instances/%s' % i)['ParentSeries']) | |
| 615 self.assertEqual(origSeries, DoGet(_REMOTE, '/instances/%s' % j)['ParentSeries']) | |
| 616 | |
| 617 DoGet(_REMOTE, '/instances/%s/content/0008-1010' % j) | |
| 618 self.assertRaises(Exception, lambda: DoGet(_REMOTE, '/instances/%s/content/0008-1010' % i)) | |
| 619 | |
| 620 | |
| 621 def test_anonymize_study(self): | |
| 622 # Upload 4 images from the 2 series of the same study | |
| 623 for i in range(4): | |
| 624 UploadInstance(_REMOTE, 'Brainix/Flair/IM-0001-000%d.dcm' % (i + 1)) | |
| 625 UploadInstance(_REMOTE, 'Brainix/Epi/IM-0001-000%d.dcm' % (i + 1)) | |
| 626 | |
| 627 origStudy = DoGet(_REMOTE, '/studies')[0] | |
| 628 newStudy = DoPost(_REMOTE,'/studies/%s/anonymize' % origStudy, | |
| 629 '{"Replace":{"PatientName":"Jodogne"}}', | |
| 630 'application/json')['ID'] | |
| 631 | |
| 632 self.assertEqual(origStudy, DoGet(_REMOTE, '/studies/%s' % newStudy)['AnonymizedFrom']) | |
| 633 series = DoGet(_REMOTE, '/studies/%s' % newStudy)['Series'] | |
| 634 self.assertEqual(2, len(series)) | |
| 635 for s in series: | |
| 636 ss = DoGet(_REMOTE, '/series/%s' % s)['AnonymizedFrom'] | |
| 637 self.assertEqual(newStudy, DoGet(_REMOTE, '/series/%s' % s)['ParentStudy']) | |
| 638 self.assertEqual(origStudy, DoGet(_REMOTE, '/series/%s' % ss)['ParentStudy']) | |
| 639 | |
| 640 instances = DoGet(_REMOTE, '/series/%s' % s)['Instances'] | |
| 641 for i in instances: | |
| 642 j = DoGet(_REMOTE, '/instances/%s' % i)['AnonymizedFrom'] | |
| 643 self.assertEqual(s, DoGet(_REMOTE, '/instances/%s' % i)['ParentSeries']) | |
| 644 self.assertEqual(ss, DoGet(_REMOTE, '/instances/%s' % j)['ParentSeries']) | |
| 645 | |
| 646 self.assertEqual('Jodogne', DoGet(_REMOTE, '/instances/%s/content/0010-0010' % i).strip()) | |
| 647 self.assertNotEqual('Jodogne', DoGet(_REMOTE, '/instances/%s/content/0010-0010' % j).strip()) | |
| 11 | 648 |
| 649 | |
| 650 | |
| 651 def test_storescu(self): | |
| 652 # Check emptiness | |
| 653 e = DoGet(_REMOTE, '/exports') | |
| 654 self.assertEqual(0, len(e['Exports'])) | |
| 655 self.assertEqual(0, e['Last']) | |
| 656 self.assertTrue(e['Done']) | |
| 657 e = DoGet(_REMOTE, '/exports?last') | |
| 658 self.assertEqual(0, len(e['Exports'])) | |
| 659 self.assertEqual(0, e['Last']) | |
| 660 self.assertTrue(e['Done']) | |
| 661 | |
| 662 # Add 1 instance | |
| 663 i = UploadInstance(_REMOTE, 'DummyCT.dcm')['ID'] | |
| 664 self.assertEqual(0, len(DoGet(_LOCAL, '/patients'))) | |
| 665 | |
| 666 # Export the instance | |
| 667 j = DoPost(_REMOTE, '/modalities/orthanctest/store', str(i), 'text/plain') # instance | |
| 668 self.assertEqual(1, len(DoGet(_LOCAL, '/patients'))) | |
| 669 self.assertEqual(1, len(DoGet(_LOCAL, '/studies'))) | |
| 670 self.assertEqual(1, len(DoGet(_LOCAL, '/series'))) | |
| 671 self.assertEqual(1, len(DoGet(_LOCAL, '/instances'))) | |
| 672 | |
| 673 e = DoGet(_REMOTE, '/exports') | |
| 674 self.assertEqual(1, len(e['Exports'])) | |
| 675 self.assertTrue(e['Done']) | |
| 676 self.assertEqual(e['Exports'][-1]['Seq'], e['Last']) | |
| 677 e = DoGet(_REMOTE, '/exports?limit=1') | |
| 678 self.assertEqual(1, len(e['Exports'])) | |
| 679 self.assertTrue(e['Done']) | |
| 680 self.assertEqual(e['Exports'][-1]['Seq'], e['Last']) | |
| 681 e = DoGet(_REMOTE, '/exports?last') | |
| 682 self.assertEqual(1, len(e['Exports'])) | |
| 683 self.assertTrue(e['Done']) | |
| 684 self.assertEqual(e['Exports'][-1]['Seq'], e['Last']) | |
| 685 seqInstance = e['Last'] | |
| 686 | |
| 687 # Export the series | |
| 688 j = DoPost(_REMOTE, '/modalities/orthanctest/store', 'f2635388-f01d497a-15f7c06b-ad7dba06-c4c599fe', 'text/plain') | |
| 689 | |
| 690 e = DoGet(_REMOTE, '/exports') | |
| 691 self.assertEqual(2, len(e['Exports'])) | |
| 692 self.assertTrue(e['Done']) | |
| 693 self.assertEqual(e['Exports'][-1]['Seq'], e['Last']) | |
| 694 seqSeries = e['Last'] | |
| 695 self.assertNotEqual(seqInstance, seqSeries) | |
| 696 e = DoGet(_REMOTE, '/exports?limit=1&since=0') | |
| 697 self.assertEqual(1, len(e['Exports'])) | |
| 698 self.assertFalse(e['Done']) | |
| 699 self.assertEqual(e['Exports'][-1]['Seq'], seqInstance) | |
| 700 e = DoGet(_REMOTE, '/exports?limit=1&since=' + str(seqInstance)) | |
| 701 self.assertEqual(1, len(e['Exports'])) | |
| 702 self.assertTrue(e['Done']) | |
| 703 self.assertEqual(e['Exports'][-1]['Seq'], seqSeries) | |
| 704 e = DoGet(_REMOTE, '/exports?last') | |
| 705 self.assertEqual(1, len(e['Exports'])) | |
| 706 self.assertTrue(e['Done']) | |
| 707 self.assertEqual(e['Exports'][-1]['Seq'], seqSeries) | |
| 708 | |
| 709 # Export the study | |
| 710 j = DoPost(_REMOTE, '/modalities/orthanctest/store', 'b9c08539-26f93bde-c81ab0d7-bffaf2cb-a4d0bdd0', 'text/plain') | |
| 711 seqStudy = DoGet(_REMOTE, '/exports')['Last'] | |
| 712 | |
| 713 # Export the patient | |
| 714 j = DoPost(_REMOTE, '/modalities/orthanctest/store', '6816cb19-844d5aee-85245eba-28e841e6-2414fae2', 'text/plain') | |
| 715 self.assertEqual(1, len(DoGet(_LOCAL, '/patients'))) | |
| 716 self.assertEqual(1, len(DoGet(_LOCAL, '/studies'))) | |
| 717 self.assertEqual(1, len(DoGet(_LOCAL, '/series'))) | |
| 718 self.assertEqual(1, len(DoGet(_LOCAL, '/instances'))) | |
| 719 | |
| 720 e = DoGet(_REMOTE, '/exports') | |
| 721 self.assertEqual(4, len(e['Exports'])) | |
| 722 self.assertTrue(e['Done']) | |
| 723 self.assertEqual(e['Exports'][-1]['Seq'], e['Last']) | |
| 724 seqPatient = e['Last'] | |
| 725 self.assertNotEqual(seqInstance, seqSeries) | |
| 726 self.assertNotEqual(seqSeries, seqStudy) | |
| 727 self.assertNotEqual(seqStudy, seqPatient) | |
| 728 self.assertTrue(seqInstance < seqSeries) | |
| 729 self.assertTrue(seqSeries < seqStudy) | |
| 730 self.assertTrue(seqStudy < seqPatient) | |
| 731 e = DoGet(_REMOTE, '/exports?limit=1&since=0') | |
| 732 self.assertEqual(1, len(e['Exports'])) | |
| 733 self.assertFalse(e['Done']) | |
| 734 self.assertEqual(e['Exports'][-1]['Seq'], seqInstance) | |
| 735 e = DoGet(_REMOTE, '/exports?limit=1&since=' + str(seqInstance)) | |
| 736 self.assertEqual(1, len(e['Exports'])) | |
| 737 self.assertFalse(e['Done']) | |
| 738 self.assertEqual(e['Exports'][-1]['Seq'], seqSeries) | |
| 739 e = DoGet(_REMOTE, '/exports?limit=1&since=' + str(seqSeries)) | |
| 740 self.assertEqual(1, len(e['Exports'])) | |
| 741 self.assertFalse(e['Done']) | |
| 742 self.assertEqual(e['Exports'][-1]['Seq'], seqStudy) | |
| 743 e = DoGet(_REMOTE, '/exports?limit=1&since=' + str(seqStudy)) | |
| 744 self.assertEqual(1, len(e['Exports'])) | |
| 745 self.assertTrue(e['Done']) | |
| 746 self.assertEqual(e['Exports'][-1]['Seq'], seqPatient) | |
| 747 e = DoGet(_REMOTE, '/exports?last') | |
| 748 self.assertEqual(1, len(e['Exports'])) | |
| 749 self.assertTrue(e['Done']) | |
| 750 self.assertEqual(e['Exports'][-1]['Seq'], seqPatient) | |
| 751 | |
| 752 | |
| 753 # Check the content of the logged information | |
| 754 e = DoGet(_REMOTE, '/exports')['Exports'] | |
| 755 | |
| 756 if 'PatientID' in e[0]: | |
| 757 # Since Orthanc 0.8.6 | |
| 758 patient = 'PatientID' | |
| 759 study = 'StudyInstanceUID' | |
| 760 series = 'SeriesInstanceUID' | |
| 761 instance = 'SOPInstanceUID' | |
| 762 else: | |
| 763 # Up to Orthanc 0.8.5 | |
| 764 patient = 'PatientId' | |
| 765 study = 'StudyInstanceUid' | |
| 766 series = 'SeriesInstanceUid' | |
| 767 instance = 'SopInstanceUid' | |
| 768 | |
| 769 for k in range(4): | |
| 770 self.assertTrue('Date' in e[k]) | |
| 771 self.assertTrue('Seq' in e[k]) | |
| 772 self.assertEqual('orthanctest', e[k]['RemoteModality']) | |
| 773 | |
| 774 self.assertEqual(10, len(e[0])) | |
| 775 self.assertEqual('Instance', e[0]['ResourceType']) | |
| 776 self.assertEqual('66a662ce-7430e543-bad44d47-0dc5a943-ec7a538d', e[0]['ID']) | |
| 777 self.assertEqual('/instances/66a662ce-7430e543-bad44d47-0dc5a943-ec7a538d', e[0]['Path']) | |
| 778 self.assertEqual('1.2.840.113619.2.176.2025.1499492.7040.1171286242.109', e[0][instance]) | |
| 779 self.assertEqual('1.2.840.113619.2.176.2025.1499492.7391.1171285944.394', e[0][series]) | |
| 780 self.assertEqual('1.2.840.113619.2.176.2025.1499492.7391.1171285944.390', e[0][study]) | |
| 781 self.assertEqual('ozp00SjY2xG', e[0][patient]) | |
| 782 | |
| 783 self.assertEqual(9, len(e[1])) | |
| 784 self.assertEqual('Series', e[1]['ResourceType']) | |
| 785 self.assertEqual('f2635388-f01d497a-15f7c06b-ad7dba06-c4c599fe', e[1]['ID']) | |
| 786 self.assertEqual('/series/f2635388-f01d497a-15f7c06b-ad7dba06-c4c599fe', e[1]['Path']) | |
| 787 self.assertEqual('1.2.840.113619.2.176.2025.1499492.7391.1171285944.394', e[1][series]) | |
| 788 self.assertEqual('1.2.840.113619.2.176.2025.1499492.7391.1171285944.390', e[1][study]) | |
| 789 self.assertEqual('ozp00SjY2xG', e[1][patient]) | |
| 790 | |
| 791 self.assertEqual(8, len(e[2])) | |
| 792 self.assertEqual('Study', e[2]['ResourceType']) | |
| 793 self.assertEqual('b9c08539-26f93bde-c81ab0d7-bffaf2cb-a4d0bdd0', e[2]['ID']) | |
| 794 self.assertEqual('/studies/b9c08539-26f93bde-c81ab0d7-bffaf2cb-a4d0bdd0', e[2]['Path']) | |
| 795 self.assertEqual('1.2.840.113619.2.176.2025.1499492.7391.1171285944.390', e[2][study]) | |
| 796 self.assertEqual('ozp00SjY2xG', e[2][patient]) | |
| 797 | |
| 798 self.assertEqual(7, len(e[3])) | |
| 799 self.assertEqual('Patient', e[3]['ResourceType']) | |
| 800 self.assertEqual('6816cb19-844d5aee-85245eba-28e841e6-2414fae2', e[3]['ID']) | |
| 801 self.assertEqual('/patients/6816cb19-844d5aee-85245eba-28e841e6-2414fae2', e[3]['Path']) | |
| 802 self.assertEqual('ozp00SjY2xG', e[3][patient]) | |
| 803 | |
| 804 DropOrthanc(_REMOTE) | |
| 805 self.assertEqual(0, len(DoGet(_REMOTE, '/exports')['Exports'])) | |
| 806 | |
| 807 | |
| 808 def test_store_peer(self): | |
| 809 self.assertEqual(0, len(DoGet(_LOCAL, '/exports')['Exports'])) | |
| 810 self.assertEqual(0, len(DoGet(_REMOTE, '/exports')['Exports'])) | |
| 811 | |
| 812 i = UploadInstance(_REMOTE, 'DummyCT.dcm')['ID'] | |
| 813 self.assertEqual(0, len(DoGet(_LOCAL, '/patients'))) | |
| 814 self.assertEqual(1, len(DoGet(_REMOTE, '/patients'))) | |
| 815 | |
| 816 j = DoPost(_REMOTE, '/peers/peer/store', str(i), 'text/plain') | |
| 817 self.assertEqual(1, len(DoGet(_LOCAL, '/patients'))) | |
| 818 self.assertEqual(1, len(DoGet(_REMOTE, '/patients'))) | |
| 819 | |
| 820 self.assertEqual(1, len(DoGet(_REMOTE, '/exports')['Exports'])) | |
| 821 | |
| 822 DropOrthanc(_REMOTE) | |
| 823 self.assertEqual(0, len(DoGet(_REMOTE, '/exports')['Exports'])) | |
| 824 | |
| 825 | |
| 826 def test_bulk_storescu(self): | |
| 827 self.assertEqual(0, len(DoGet(_LOCAL, '/patients'))) | |
| 828 | |
| 829 a = UploadInstance(_REMOTE, 'Knee/T1/IM-0001-0001.dcm') | |
| 830 b = UploadInstance(_REMOTE, 'Knee/T2/IM-0001-0001.dcm') | |
| 831 | |
| 832 j = DoPost(_REMOTE, '/modalities/orthanctest/store', [ a['ID'], b['ID'] ], 'application/json') | |
| 833 self.assertEqual(2, len(DoGet(_LOCAL, '/instances'))) | |
| 834 | |
| 835 DropOrthanc(_LOCAL) | |
| 836 | |
| 837 # Send using patient's UUID | |
| 838 self.assertEqual(0, len(DoGet(_LOCAL, '/instances'))) | |
| 839 j = DoPost(_REMOTE, '/modalities/orthanctest/store', | |
| 840 [ 'ca29faea-b6a0e17f-067743a1-8b778011-a48b2a17' ], 'application/json') | |
| 841 self.assertEqual(2, len(DoGet(_LOCAL, '/instances'))) | |
| 842 | |
| 843 | |
| 844 def test_color(self): | |
| 845 i = UploadInstance(_REMOTE, 'ColorTestMalaterre.dcm')['ID'] | |
| 846 im = GetImage(_REMOTE, '/instances/%s/preview' % i) | |
| 847 self.assertEqual("RGB", im.mode) | |
| 848 self.assertEqual(41, im.size[0]) | |
| 849 self.assertEqual(41, im.size[1]) | |
| 850 | |
| 851 # http://effbot.org/zone/pil-comparing-images.htm | |
| 13 | 852 truth = Image.open(GetDatabasePath('ColorTestMalaterre.png')) |
| 11 | 853 self.assertTrue(ImageChops.difference(im, truth).getbbox() is None) |
| 854 | |
| 855 | |
| 12 | 856 def test_faking_ruby_put(self): |
| 857 UploadInstance(_REMOTE, 'Knee/T1/IM-0001-0001.dcm') | |
| 858 UploadInstance(_REMOTE, 'Brainix/Flair/IM-0001-0001.dcm') | |
| 859 self.assertEqual(2, len(DoGet(_REMOTE, '/patients'))) | |
| 860 a = DoGet(_REMOTE, '/patients')[0] | |
| 861 b = DoGet(_REMOTE, '/patients')[1] | |
| 862 self.assertEqual(0, DoGet(_REMOTE, '/patients/%s/protected' % a)) | |
| 863 DoGet(_REMOTE, '/patients/%s/protected' % a, data = { '_method' : 'PUT' }, body = '0') | |
| 864 self.assertEqual(0, DoGet(_REMOTE, '/patients/%s/protected' % a)) | |
| 865 DoGet(_REMOTE, '/patients/%s/protected' % a, data = { '_method' : 'PUT' }, body = '1') | |
| 866 self.assertEqual(1, DoGet(_REMOTE, '/patients/%s/protected' % a)) | |
| 867 DoGet(_REMOTE, '/patients/%s/protected' % a, data = { '_method' : 'PUT' }, body = '0') | |
| 868 self.assertEqual(0, DoGet(_REMOTE, '/patients/%s/protected' % a)) | |
| 869 | |
| 870 | |
| 871 def test_faking_ruby_delete(self): | |
| 872 UploadInstance(_REMOTE, 'Knee/T1/IM-0001-0001.dcm') | |
| 873 UploadInstance(_REMOTE, 'Brainix/Flair/IM-0001-0001.dcm') | |
| 874 self.assertEqual(2, len(DoGet(_REMOTE, '/patients'))) | |
| 875 a = DoGet(_REMOTE, '/patients')[0] | |
| 876 b = DoGet(_REMOTE, '/patients')[1] | |
| 877 DoGet(_REMOTE, '/patients/%s' % a, data = { '_method' : 'DELETE' }) | |
| 878 self.assertEqual(1, len(DoGet(_REMOTE, '/patients'))) | |
| 879 DoGet(_REMOTE, '/patients/%s' % b, data = { '_method' : 'DELETE' }) | |
| 880 self.assertEqual(0, len(DoGet(_REMOTE, '/patients'))) | |
| 881 | |
| 882 | |
| 883 def test_faking_google_put(self): | |
| 884 UploadInstance(_REMOTE, 'Knee/T1/IM-0001-0001.dcm') | |
| 885 UploadInstance(_REMOTE, 'Brainix/Flair/IM-0001-0001.dcm') | |
| 886 self.assertEqual(2, len(DoGet(_REMOTE, '/patients'))) | |
| 887 a = DoGet(_REMOTE, '/patients')[0] | |
| 888 b = DoGet(_REMOTE, '/patients')[1] | |
| 889 self.assertEqual(0, DoGet(_REMOTE, '/patients/%s/protected' % a)) | |
| 890 DoPost(_REMOTE, '/patients/%s/protected' % a, headers = { 'X-HTTP-Method-Override' : 'PUT' }, data = '0') | |
| 891 self.assertEqual(0, DoGet(_REMOTE, '/patients/%s/protected' % a)) | |
| 892 DoPost(_REMOTE, '/patients/%s/protected' % a, headers = { 'X-HTTP-Method-Override' : 'PUT' }, data = '1') | |
| 893 self.assertEqual(1, DoGet(_REMOTE, '/patients/%s/protected' % a)) | |
| 894 DoPost(_REMOTE, '/patients/%s/protected' % a, headers = { 'X-HTTP-Method-Override' : 'PUT' }, data = '0') | |
| 895 self.assertEqual(0, DoGet(_REMOTE, '/patients/%s/protected' % a)) | |
| 896 | |
| 897 | |
| 898 def test_faking_google_delete(self): | |
| 899 UploadInstance(_REMOTE, 'Knee/T1/IM-0001-0001.dcm') | |
| 900 UploadInstance(_REMOTE, 'Brainix/Flair/IM-0001-0001.dcm') | |
| 901 self.assertEqual(2, len(DoGet(_REMOTE, '/patients'))) | |
| 902 a = DoGet(_REMOTE, '/patients')[0] | |
| 903 b = DoGet(_REMOTE, '/patients')[1] | |
| 904 DoPost(_REMOTE, '/patients/%s' % a, headers = { 'X-HTTP-Method-Override' : 'DELETE' }) | |
| 905 self.assertEqual(1, len(DoGet(_REMOTE, '/patients'))) | |
| 906 DoPost(_REMOTE, '/patients/%s' % b, headers = { 'X-HTTP-Method-Override' : 'DELETE' }) | |
| 907 self.assertEqual(0, len(DoGet(_REMOTE, '/patients'))) | |
| 908 | |
| 909 | |
| 910 def test_lua(self): | |
| 911 self.assertEqual(42, DoPost(_REMOTE, '/tools/execute-script', 'print(42)')) | |
| 912 self.assertTrue(IsDefinedInLua(_REMOTE, 'PrintRecursive')) | |
| 913 self.assertFalse(IsDefinedInLua(_REMOTE, 'HelloWorld')) | |
| 914 | |
| 915 | |
| 916 def test_metadata(self): | |
| 917 UploadInstance(_REMOTE, 'Knee/T1/IM-0001-0001.dcm') | |
| 918 p = DoGet(_REMOTE, '/patients')[0] | |
| 919 i = DoGet(_REMOTE, '/instances')[0] | |
| 920 | |
| 921 m = DoGet(_REMOTE, '/patients/%s/metadata' % p) | |
| 922 self.assertEqual(1, len(m)) | |
| 923 self.assertEqual('LastUpdate', m[0]) | |
| 924 | |
| 925 m = DoGet(_REMOTE, '/instances/%s/metadata' % i) | |
|
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parents:
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diff
changeset
|
926 self.assertEqual(4, len(m)) |
| 12 | 927 self.assertTrue('IndexInSeries' in m) |
| 928 self.assertTrue('ReceptionDate' in m) | |
| 929 self.assertTrue('RemoteAET' in m) | |
|
63
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parents:
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diff
changeset
|
930 self.assertTrue('Origin' in m) |
|
2652d562267a
test Origin metadata of instances
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
changeset
|
931 self.assertEqual(DoGet(_REMOTE, '/instances/%s/metadata/IndexInSeries' % i), 1) |
|
2652d562267a
test Origin metadata of instances
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parents:
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diff
changeset
|
932 self.assertEqual(DoGet(_REMOTE, '/instances/%s/metadata/Origin' % i), 'RestApi') |
|
2652d562267a
test Origin metadata of instances
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
changeset
|
933 self.assertEqual(DoGet(_REMOTE, '/instances/%s/metadata/RemoteAET' % i), '') # None, received by REST API |
| 12 | 934 |
| 935 # Play with custom metadata | |
| 936 DoPut(_REMOTE, '/patients/%s/metadata/5555' % p, 'coucou') | |
| 937 m = DoGet(_REMOTE, '/patients/%s/metadata' % p) | |
| 938 self.assertEqual(2, len(m)) | |
| 939 self.assertTrue('LastUpdate' in m) | |
| 940 self.assertTrue('5555' in m) | |
| 941 self.assertEqual('coucou', DoGet(_REMOTE, '/patients/%s/metadata/5555' % p)) | |
| 942 DoPut(_REMOTE, '/patients/%s/metadata/5555' % p, 'hello') | |
| 943 self.assertEqual('hello', DoGet(_REMOTE, '/patients/%s/metadata/5555' % p)) | |
| 944 DoDelete(_REMOTE, '/patients/%s/metadata/5555' % p) | |
| 945 m = DoGet(_REMOTE, '/patients/%s/metadata' % p) | |
| 946 self.assertEqual(1, len(m)) | |
| 947 self.assertTrue('LastUpdate' in m) | |
| 13 | 948 |
| 949 | |
| 950 def test_statistics(self): | |
| 951 # Upload 16 instances | |
| 952 for i in range(4): | |
| 953 UploadInstance(_REMOTE, 'Brainix/Flair/IM-0001-000%d.dcm' % (i + 1)) | |
| 954 UploadInstance(_REMOTE, 'Brainix/Epi/IM-0001-000%d.dcm' % (i + 1)) | |
| 955 UploadInstance(_REMOTE, 'Knee/T1/IM-0001-000%d.dcm' % (i + 1)) | |
| 956 UploadInstance(_REMOTE, 'Knee/T2/IM-0001-000%d.dcm' % (i + 1)) | |
| 957 | |
| 958 s = DoGet(_REMOTE, '/statistics') | |
| 959 self.assertEqual(16, s['CountInstances']) | |
| 960 self.assertEqual(2, s['CountPatients']) | |
| 961 self.assertEqual(2, s['CountStudies']) | |
| 962 self.assertEqual(4, s['CountSeries']) | |
| 963 d = int(s['TotalUncompressedSize']) | |
| 964 | |
| 965 e = 0 | |
| 966 for patient in DoGet(_REMOTE, '/patients'): | |
| 967 s = DoGet(_REMOTE, '/patients/%s/statistics' % patient) | |
| 968 self.assertEqual(8, s['CountInstances']) | |
| 969 self.assertEqual(1, s['CountStudies']) | |
| 970 self.assertEqual(2, s['CountSeries']) | |
| 971 e += int(s['UncompressedSize']) | |
| 972 | |
| 973 for study in DoGet(_REMOTE, '/studies'): | |
| 974 s = DoGet(_REMOTE, '/studies/%s/statistics' % study) | |
| 975 self.assertEqual(8, s['CountInstances']) | |
| 976 self.assertEqual(2, s['CountSeries']) | |
| 977 e += int(s['UncompressedSize']) | |
| 978 | |
| 979 for series in DoGet(_REMOTE, '/series'): | |
| 980 s = DoGet(_REMOTE, '/series/%s/statistics' % series) | |
| 981 self.assertEqual(4, s['CountInstances']) | |
| 982 e += int(s['UncompressedSize']) | |
| 983 | |
| 984 self.assertEqual(3 * d, e) | |
| 985 | |
| 986 | |
| 987 def test_custom_attachment(self): | |
| 988 UploadInstance(_REMOTE, 'Brainix/Flair/IM-0001-0001.dcm') | |
| 989 patient = DoGet(_REMOTE, '/patients')[0] | |
| 990 instance = DoGet(_REMOTE, '/instances')[0] | |
| 991 size = int(DoGet(_REMOTE, '/patients/%s/statistics' % patient)['DiskSize']) | |
| 992 self.assertEqual(size, int(DoGet(_REMOTE, '/statistics')['TotalDiskSize'])) | |
| 993 | |
| 994 self.assertEqual(0, len(DoGet(_REMOTE, '/patients/%s/attachments' % patient))) | |
| 995 self.assertEqual(2, len(DoGet(_REMOTE, '/instances/%s/attachments' % instance))) | |
| 996 self.assertTrue('dicom' in DoGet(_REMOTE, '/instances/%s/attachments' % instance)) | |
| 997 self.assertTrue('dicom-as-json' in DoGet(_REMOTE, '/instances/%s/attachments' % instance)) | |
| 998 | |
| 999 self.assertRaises(Exception, lambda: DoPut(_REMOTE, '/patients/%s/attachments/22' % patient, 'hello')) | |
| 1000 hello = 'hellohellohellohellohellohellohellohellohello' | |
| 1001 DoPut(_REMOTE, '/patients/%s/attachments/1025' % patient, hello) | |
| 1002 self.assertEqual(int(DoGet(_REMOTE, '/patients/%s/statistics' % patient)['DiskSize']), | |
| 1003 int(DoGet(_REMOTE, '/statistics')['TotalDiskSize'])) | |
| 1004 self.assertEqual(int(DoGet(_REMOTE, '/patients/%s/statistics' % patient)['DiskSize']), | |
| 1005 size + int(DoGet(_REMOTE, '/patients/%s/attachments/1025/compressed-size' % patient))) | |
| 1006 | |
| 1007 DoPut(_REMOTE, '/patients/%s/attachments/1026' % patient, 'world') | |
| 1008 self.assertEqual(int(DoGet(_REMOTE, '/patients/%s/statistics' % patient)['DiskSize']), | |
| 1009 int(DoGet(_REMOTE, '/statistics')['TotalDiskSize'])) | |
| 1010 self.assertEqual(int(DoGet(_REMOTE, '/patients/%s/statistics' % patient)['DiskSize']), | |
| 1011 size + | |
| 1012 int(DoGet(_REMOTE, '/patients/%s/attachments/1025/compressed-size' % patient)) + | |
| 1013 int(DoGet(_REMOTE, '/patients/%s/attachments/1026/compressed-size' % patient))) | |
| 1014 | |
| 1015 self.assertEqual(2, len(DoGet(_REMOTE, '/patients/%s/attachments' % patient))) | |
| 1016 self.assertEqual(hello, DoGet(_REMOTE, '/patients/%s/attachments/1025/data' % patient)) | |
| 1017 self.assertEqual('world', DoGet(_REMOTE, '/patients/%s/attachments/1026/data' % patient)) | |
| 1018 DoPost(_REMOTE, '/patients/%s/attachments/1025/verify-md5' % patient) | |
| 1019 DoPost(_REMOTE, '/patients/%s/attachments/1026/verify-md5' % patient) | |
| 1020 DoPut(_REMOTE, '/patients/%s/attachments/1026' % patient, 'world2') | |
| 1021 self.assertEqual('world2', DoGet(_REMOTE, '/patients/%s/attachments/1026/data' % patient)) | |
| 1022 | |
| 1023 self.assertRaises(Exception, lambda: DoDelete(_REMOTE, '/instances/%s/attachments/dicom' % instance)) | |
| 1024 DoDelete(_REMOTE, '/patients/%s/attachments/1025' % patient) | |
| 1025 self.assertEqual(int(DoGet(_REMOTE, '/patients/%s/statistics' % patient)['DiskSize']), | |
| 1026 int(DoGet(_REMOTE, '/statistics')['TotalDiskSize'])) | |
| 1027 self.assertEqual(int(DoGet(_REMOTE, '/patients/%s/statistics' % patient)['DiskSize']), | |
| 1028 size + int(DoGet(_REMOTE, '/patients/%s/attachments/1026/compressed-size' % patient))) | |
| 1029 | |
| 1030 self.assertEqual(1, len(DoGet(_REMOTE, '/patients/%s/attachments' % patient))) | |
| 1031 DoDelete(_REMOTE, '/patients/%s/attachments/1026' % patient) | |
| 1032 self.assertEqual(0, len(DoGet(_REMOTE, '/patients/%s/attachments' % patient))) | |
| 1033 | |
| 1034 self.assertEqual(int(DoGet(_REMOTE, '/patients/%s/statistics' % patient)['DiskSize']), size) | |
| 1035 self.assertEqual(size, int(DoGet(_REMOTE, '/statistics')['TotalDiskSize'])) | |
| 1036 | |
| 1037 | |
| 1038 def test_incoming_storescu(self): | |
| 1039 self.assertEqual(0, len(DoGet(_REMOTE, '/patients'))) | |
| 45 | 1040 subprocess.check_call([ FindExecutable('storescu'), |
|
44
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|
1041 _REMOTE['Server'], str(_REMOTE['DicomPort']), |
| 13 | 1042 GetDatabasePath('ColorTestImageJ.dcm') ]) |
| 1043 self.assertEqual(1, len(DoGet(_REMOTE, '/patients'))) | |
| 1044 | |
|
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|
1045 i = DoGet(_REMOTE, '/instances') |
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1046 self.assertEqual(1, len(i)) |
|
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1047 m = DoGet(_REMOTE, '/instances/%s/metadata' % i[0]) |
|
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1048 self.assertEqual(4, len(m)) |
|
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1049 self.assertTrue('IndexInSeries' in m) |
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1050 self.assertTrue('ReceptionDate' in m) |
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1051 self.assertTrue('RemoteAET' in m) |
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1052 self.assertTrue('Origin' in m) |
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1053 self.assertEqual(DoGet(_REMOTE, '/instances/%s/metadata/IndexInSeries' % i[0]), 1) |
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1054 self.assertEqual(DoGet(_REMOTE, '/instances/%s/metadata/Origin' % i[0]), 'DicomProtocol') |
|
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1055 self.assertEqual(DoGet(_REMOTE, '/instances/%s/metadata/RemoteAET' % i[0]), 'STORESCU') |
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1056 |
| 13 | 1057 |
| 1058 def test_incoming_findscu(self): | |
| 1059 UploadInstance(_REMOTE, 'Multiframe.dcm') | |
| 1060 UploadInstance(_REMOTE, 'ColorTestImageJ.dcm') | |
| 1061 | |
| 1062 i = CallFindScu([ '-k', '0008,0052=PATIENT', '-k', '0010,0010' ]) | |
| 1063 patientNames = re.findall('\(0010,0010\).*?\[(.*?)\]', i) | |
| 1064 self.assertEqual(2, len(patientNames)) | |
| 1065 self.assertTrue('Test Patient BG ' in patientNames) | |
| 1066 self.assertTrue('Anonymized' in patientNames) | |
| 1067 | |
| 1068 i = CallFindScu([ '-k', '0008,0052=SERIES', '-k', '0008,0021' ]) | |
| 1069 series = re.findall('\(0008,0021\).*?\[\s*(.*?)\s*\]', i) | |
| 1070 self.assertEqual(2, len(series)) | |
| 1071 self.assertTrue('20070208' in series) | |
| 1072 self.assertTrue('19980312' in series) | |
| 1073 | |
|
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1074 i = CallFindScu([ '-k', '0008,0052=SERIES', '-k', '0008,0021', '-k', 'ModalitiesInStudy=MR\\XA' ]) |
|
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1075 series = re.findall('\(0008,0021\).*?\[\s*(.*?)\s*\]', i) |
|
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1076 self.assertEqual(1, len(series)) |
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1077 self.assertTrue('19980312' in series) |
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|
1078 |
| 13 | 1079 i = CallFindScu([ '-k', '0008,0052=SERIES', '-k', 'PatientName=Anonymized' ]) |
| 1080 series = re.findall('\(0010,0010\).*?\[\s*(.*?)\s*\]', i) | |
| 1081 self.assertEqual(1, len(series)) | |
| 1082 | |
| 1083 # Test the "CaseSentitivePN" flag (false by default) | |
| 1084 i = CallFindScu([ '-k', '0008,0052=SERIES', '-k', 'PatientName=anonymized' ]) | |
| 1085 series = re.findall('\(0010,0010\).*?\[\s*(.*?)\s*\]', i) | |
| 1086 self.assertEqual(1, len(series)) | |
|
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1087 |
|
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1088 # Test returning sequence values (only since Orthanc 0.9.5) |
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1089 i = CallFindScu([ '-k', '0008,0052=SERIES', '-k', '0008,2112' ]) # "ColorTestImageJ" has this sequence tag |
|
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1090 sequences = re.findall('\(0008,2112\)', i) |
|
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1091 self.assertEqual(1, len(sequences)) |
| 70 | 1092 |
| 1093 # Test range search (buggy if Orthanc <= 0.9.6) | |
| 1094 i = CallFindScu([ '-k', '0008,0052=STUDY', '-k', 'StudyDate=19980312-' ]) | |
| 1095 studies = re.findall('\(0008,0020\).*?\[\s*(.*?)\s*\]', i) | |
| 1096 self.assertEqual(2, len(studies)) | |
| 1097 self.assertTrue('20070208' in studies) | |
| 1098 self.assertTrue('19980312' in studies) | |
| 1099 i = CallFindScu([ '-k', '0008,0052=STUDY', '-k', 'StudyDate=19980312-19980312' ]) | |
| 1100 studies = re.findall('\(0008,0020\).*?\[\s*(.*?)\s*\]', i) | |
| 1101 self.assertEqual(1, len(studies)) | |
| 1102 self.assertTrue('19980312' in studies) | |
| 1103 i = CallFindScu([ '-k', '0008,0052=STUDY', '-k', 'StudyDate=-19980312' ]) | |
| 1104 studies = re.findall('\(0008,0020\).*?\[\s*(.*?)\s*\]', i) | |
| 1105 self.assertEqual(1, len(studies)) | |
| 1106 self.assertTrue('19980312' in studies) | |
| 13 | 1107 |
| 1108 | |
| 1109 def test_incoming_movescu(self): | |
| 1110 UploadInstance(_REMOTE, 'Multiframe.dcm') | |
| 1111 | |
| 1112 self.assertEqual(0, len(DoGet(_LOCAL, '/patients'))) | |
| 17 | 1113 CallMoveScu([ '--patient', '-k', '0008,0052=PATIENT', '-k', 'PatientID=none' ]) |
| 13 | 1114 self.assertEqual(0, len(DoGet(_LOCAL, '/patients'))) |
| 1115 CallMoveScu([ '--patient', '-k', '0008,0052=PATIENT', '-k', 'PatientID=12345678' ]) | |
| 1116 self.assertEqual(1, len(DoGet(_LOCAL, '/patients'))) | |
| 1117 | |
| 1118 | |
| 1119 def test_findscu(self): | |
| 1120 i = UploadInstance(_REMOTE, 'DummyCT.dcm')['ID'] | |
| 1121 j = UploadInstance(_REMOTE, 'Issue22.dcm')['ID'] | |
| 1122 k = UploadInstance(_REMOTE, 'ColorTestImageJ.dcm')['ID'] | |
| 1123 DoPost(_REMOTE, '/modalities/orthanctest/store', str(i), 'text/plain') | |
| 1124 | |
| 1125 # Test the "find-patient" level | |
| 1126 p = DoPost(_REMOTE, '/modalities/orthanctest/find-patient', { }) | |
| 1127 self.assertEqual(1, len(p)) | |
| 1128 self.assertEqual('ozp00SjY2xG', p[0]['PatientID']) | |
| 1129 | |
| 1130 # Test wildcards constraints. The "LO" value representation | |
| 1131 # for PatientID is always case-sensitive, but the "PN" for | |
| 1132 # PatientName might depend on the implementation: | |
| 1133 # "GenerateConfigurationForTests.py" will force it to be case | |
| 1134 # insensitive (which was the default until Orthanc 0.8.6). | |
| 1135 p = DoPost(_REMOTE, '/modalities/orthanctest/find-patient', { 'PatientName' : 'K*' }) | |
| 1136 self.assertEqual(1, len(p)) | |
| 1137 | |
| 1138 p = DoPost(_REMOTE, '/modalities/orthanctest/find-patient', { 'PatientName' : 'k*' }) | |
| 1139 self.assertEqual(1, len(p)) | |
| 1140 | |
| 1141 p = DoPost(_REMOTE, '/modalities/orthanctest/find-patient', { 'PatientID' : 'ozp*' }) | |
| 1142 self.assertEqual(1, len(p)) | |
| 1143 | |
| 1144 p = DoPost(_REMOTE, '/modalities/orthanctest/find-patient', { 'PatientID' : 'o?p*' }) | |
| 1145 self.assertEqual(1, len(p)) | |
| 1146 | |
| 1147 p = DoPost(_REMOTE, '/modalities/orthanctest/find-patient', { 'PatientID' : '0?q*' }) | |
| 1148 self.assertEqual(0, len(p)) | |
| 1149 | |
| 1150 p = DoPost(_REMOTE, '/modalities/orthanctest/find-patient', { 'PatientName' : 'B*' }) | |
| 1151 self.assertEqual(0, len(p)) | |
| 1152 | |
| 1153 p = DoPost(_REMOTE, '/modalities/orthanctest/find-patient', { 'PatientName' : 'b*' }) | |
| 1154 self.assertEqual(0, len(p)) | |
| 1155 | |
| 1156 DoPost(_REMOTE, '/modalities/orthanctest/store', str(j), 'text/plain') | |
| 1157 DoPost(_REMOTE, '/modalities/orthanctest/store', str(k), 'text/plain') | |
| 1158 DoPost(_REMOTE, '/modalities/orthanctest/find-patient', { }) | |
| 1159 self.assertEqual(3, len(DoPost(_REMOTE, '/modalities/orthanctest/find-patient', { }))) | |
| 1160 | |
| 1161 p = DoPost(_REMOTE, '/modalities/orthanctest/find-patient', { 'PatientName' : 'A*' }) | |
| 1162 self.assertEqual(2, len(p)) | |
| 1163 | |
| 1164 # Test the "find-study" level. This is the instance "ColorTestImageJ.dcm" | |
| 1165 s = DoPost(_REMOTE, '/modalities/orthanctest/find-study', { 'PatientID' : 'B9uTHKOZ' }) | |
| 1166 self.assertEqual(1, len(s)) | |
| 1167 self.assertEqual('20070208', s[0]['StudyDate']) | |
| 1168 | |
| 1169 # Test range searches | |
| 1170 t = DoPost(_REMOTE, '/modalities/orthanctest/find-study', { 'PatientID' : 'B9uTHKOZ', | |
| 1171 'StudyDate' : '-20070101' }) | |
| 1172 self.assertEqual(0, len(t)) | |
| 1173 | |
| 1174 t = DoPost(_REMOTE, '/modalities/orthanctest/find-study', { 'PatientID' : 'B9uTHKOZ', | |
| 1175 'StudyDate' : '20090101-' }) | |
| 1176 self.assertEqual(0, len(t)) | |
| 1177 | |
| 1178 t = DoPost(_REMOTE, '/modalities/orthanctest/find-study', { 'PatientID' : 'B9uTHKOZ', | |
| 1179 'StudyDate' : '20070101-' }) | |
| 1180 self.assertEqual(1, len(t)) | |
| 1181 | |
| 1182 t = DoPost(_REMOTE, '/modalities/orthanctest/find-study', { 'PatientID' : 'B9uTHKOZ', | |
| 1183 'StudyDate' : '-20090101' }) | |
| 1184 self.assertEqual(1, len(t)) | |
| 1185 | |
| 1186 t = DoPost(_REMOTE, '/modalities/orthanctest/find-study', { 'PatientID' : 'B9uTHKOZ', | |
| 1187 'StudyDate' : '20070207-20070207' }) | |
| 1188 self.assertEqual(0, len(t)) | |
| 1189 | |
| 1190 t = DoPost(_REMOTE, '/modalities/orthanctest/find-study', { 'PatientID' : 'B9uTHKOZ', | |
| 1191 'StudyDate' : '20070208-20070208' }) | |
| 1192 self.assertEqual(1, len(t)) | |
| 1193 | |
| 1194 t = DoPost(_REMOTE, '/modalities/orthanctest/find-study', { 'PatientID' : 'B9uTHKOZ', | |
| 1195 'StudyDate' : '20070209-20070209' }) | |
| 1196 self.assertEqual(0, len(t)) | |
| 1197 | |
| 1198 # Test the ModalitiesInStudy tag | |
| 1199 t = DoPost(_REMOTE, '/modalities/orthanctest/find-study', { | |
| 1200 'PatientID' : 'B9uTHKOZ', | |
| 1201 'ModalitiesInStudy' : 'US' }) | |
| 1202 self.assertEqual(0, len(t)) | |
| 1203 | |
| 1204 t = DoPost(_REMOTE, '/modalities/orthanctest/find-study', { | |
| 1205 'PatientID' : 'B9uTHKOZ', | |
| 1206 'ModalitiesInStudy' : 'CT' }) | |
| 1207 self.assertEqual(1, len(t)) | |
| 1208 | |
| 1209 t = DoPost(_REMOTE, '/modalities/orthanctest/find-study', { | |
| 1210 'PatientID' : 'B9uTHKOZ', | |
| 1211 'ModalitiesInStudy' : 'US\\CT' }) | |
| 1212 self.assertEqual(1, len(t)) | |
| 1213 | |
| 1214 # Test the "find-series" level | |
| 1215 t = DoPost(_REMOTE, '/modalities/orthanctest/find-series', { | |
| 1216 'PatientID' : 'B9uTHKOZ', | |
| 1217 'StudyInstanceUID' : s[0]['StudyInstanceUID'] }) | |
| 1218 self.assertEqual(1, len(t)) | |
| 1219 | |
| 1220 # Test "\" separator | |
| 1221 t = DoPost(_REMOTE, '/modalities/orthanctest/find-series', { | |
| 1222 'PatientID' : 'B9uTHKOZ', | |
| 1223 'StudyInstanceUID' : s[0]['StudyInstanceUID'], | |
| 1224 'Modality' : 'MR\\CT\\US' }) | |
| 1225 self.assertEqual(1, len(t)) | |
| 1226 | |
| 1227 t = DoPost(_REMOTE, '/modalities/orthanctest/find-series', { | |
| 1228 'PatientID' : 'B9uTHKOZ', | |
| 1229 'StudyInstanceUID' : s[0]['StudyInstanceUID'], | |
| 1230 'Modality' : 'MR\\US' }) | |
| 1231 self.assertEqual(0, len(t)) | |
| 1232 | |
| 1233 | |
| 1234 def test_update_modalities(self): | |
| 1235 try: | |
| 1236 DoDelete(_REMOTE, '/modalities/toto') | |
| 1237 except: | |
| 1238 pass | |
| 1239 try: | |
| 1240 DoDelete(_REMOTE, '/modalities/tata') | |
| 1241 except: | |
| 1242 pass | |
| 1243 self.assertRaises(Exception, lambda: DoGet(_REMOTE, '/modalities/toto')) | |
| 1244 DoPut(_REMOTE, '/modalities/toto', [ "STORESCP", "localhost", 2000 ]) | |
| 1245 DoPut(_REMOTE, '/modalities/tata', [ "STORESCP", "localhost", 2000, 'MedInria' ]) | |
| 1246 self.assertRaises(Exception, lambda: DoPut(_REMOTE, '/modalities/toto', [ "STORESCP", "localhost", 2000, 'MedInriaaa' ])) | |
| 1247 self.assertTrue('store' in DoGet(_REMOTE, '/modalities/toto')) | |
| 1248 self.assertTrue('store' in DoGet(_REMOTE, '/modalities/tata')) | |
| 1249 DoDelete(_REMOTE, '/modalities/toto') | |
| 1250 DoDelete(_REMOTE, '/modalities/tata') | |
| 1251 self.assertRaises(Exception, lambda: DoGet(_REMOTE, '/modalities/toto')) | |
| 1252 self.assertRaises(Exception, lambda: DoGet(_REMOTE, '/modalities/tata')) | |
| 1253 | |
| 1254 | |
| 1255 def test_update_peers(self): | |
| 1256 # curl -X PUT http://localhost:8042/peers/toto -d '["http://localhost:8042/"]' -v | |
| 1257 try: | |
| 1258 DoDelete(_REMOTE, '/peers/toto') | |
| 1259 except: | |
| 1260 pass | |
| 1261 try: | |
| 1262 DoDelete(_REMOTE, '/peers/tata') | |
| 1263 except: | |
| 1264 pass | |
| 1265 self.assertRaises(Exception, lambda: DoGet(_REMOTE, '/peers/toto')) | |
| 1266 DoPut(_REMOTE, '/peers/toto', [ 'http://localhost:8042/' ]) | |
| 1267 DoPut(_REMOTE, '/peers/tata', [ 'http://localhost:8042/', 'user', 'pass' ]) | |
| 1268 self.assertRaises(Exception, lambda: DoPut(_REMOTE, '/peers/toto', [ 'http://localhost:8042/', 'a' ])) | |
| 1269 self.assertRaises(Exception, lambda: DoPut(_REMOTE, '/peers/toto', [ 'http://localhost:8042/', 'a', 'b', 'c' ])) | |
| 1270 self.assertTrue('store' in DoGet(_REMOTE, '/peers/toto')) | |
| 1271 self.assertTrue('store' in DoGet(_REMOTE, '/peers/tata')) | |
| 1272 DoDelete(_REMOTE, '/peers/toto') | |
| 1273 DoDelete(_REMOTE, '/peers/tata') | |
| 1274 self.assertRaises(Exception, lambda: DoGet(_REMOTE, '/peers/toto')) | |
| 1275 self.assertRaises(Exception, lambda: DoGet(_REMOTE, '/peers/tata')) | |
| 1276 | |
| 1277 | |
| 1278 def test_mesterhazy_modification(self): | |
| 1279 # When I modify a series ( eg. curl | |
| 1280 # http://localhost:8042/series/uidhere/modify -X POST -d | |
| 1281 # '{"Replace":{"SeriesDate":"19990101"}}' ) the modified | |
| 1282 # series is added to a new Study, instead of the existing | |
| 1283 # Study. Fixed in Orthanc 0.7.5 | |
| 1284 | |
| 1285 u = UploadInstance(_REMOTE, 'DummyCT.dcm') | |
| 1286 study = 'b9c08539-26f93bde-c81ab0d7-bffaf2cb-a4d0bdd0' | |
| 1287 series = 'f2635388-f01d497a-15f7c06b-ad7dba06-c4c599fe' | |
| 1288 | |
| 1289 modified = DoPost(_REMOTE, '/series/%s/modify' % series, | |
| 1290 json.dumps({ "Replace" : { "SeriesDate" : "19990101" }})) | |
| 1291 | |
| 1292 self.assertEqual(study, DoGet(_REMOTE, '/series/%s' % modified['ID']) ['ParentStudy']) | |
| 1293 | |
| 1294 | |
| 1295 def test_create(self): | |
| 1296 i = DoPost(_REMOTE, '/tools/create-dicom', | |
| 1297 json.dumps({ | |
| 1298 'PatientName' : 'Jodogne', | |
| 1299 'Modality' : 'CT', | |
| 58 | 1300 'SOPClassUID' : '1.2.840.10008.5.1.4.1.1.1', |
| 13 | 1301 'PixelData' : 'data:image/png;base64,iVBORw0KGgoAAAANSUhEUgAAAAUAAAAFCAYAAACNbyblAAAAHElEQVQI12P4//8/w38GIAXDIBKE0DHxgljNBAAO9TXL0Y4OHwAAAABJRU5ErkJggg==' # red dot in RGBA |
| 1302 })) | |
| 1303 | |
| 1304 self.assertEqual('Jodogne', DoGet(_REMOTE, '/instances/%s/content/PatientName' % i['ID']).strip()) | |
| 1305 self.assertEqual('CT', DoGet(_REMOTE, '/instances/%s/content/Modality' % i['ID']).strip()) | |
| 1306 | |
| 1307 png = GetImage(_REMOTE, '/instances/%s/preview' % i['ID']) | |
| 1308 self.assertEqual((5, 5), png.size) | |
| 1309 | |
| 38 | 1310 j = DoGet(_REMOTE, i['Path']) |
| 1311 self.assertEqual('Instance', j['Type']) | |
| 1312 self.assertEqual(j['ID'], i['ID']) | |
| 1313 | |
| 13 | 1314 |
| 1315 def test_pilates(self): | |
| 1316 # "SCU failed error when accessing orthanc with osirix" by | |
| 1317 # Pilates Agentur (Mar 10, 2014 at 9:33 PM) | |
| 1318 i = UploadInstance(_REMOTE, 'PilatesArgenturGEUltrasoundOsiriX.dcm')['ID'] | |
| 1319 self.assertEqual(0, len(DoGet(_LOCAL, '/patients'))) | |
| 1320 j = DoPost(_REMOTE, '/modalities/orthanctest/store', str(i), 'text/plain') | |
| 1321 self.assertEqual(1, len(DoGet(_LOCAL, '/patients'))) | |
| 1322 | |
| 1323 | |
| 1324 def test_shared_tags(self): | |
| 1325 a = UploadInstance(_REMOTE, 'Knee/T1/IM-0001-0001.dcm')['ID'] | |
| 1326 b = UploadInstance(_REMOTE, 'Knee/T1/IM-0001-0002.dcm')['ID'] | |
| 1327 p = DoGet(_REMOTE, '/patients')[0] | |
| 1328 | |
| 1329 self.assertTrue('0010,0010' in DoGet(_REMOTE, '/patients/%s/shared-tags' % p)) | |
| 1330 self.assertTrue('PatientName' in DoGet(_REMOTE, '/patients/%s/shared-tags?simplify' % p)) | |
| 1331 self.assertTrue('0008,1030' in DoGet(_REMOTE, '/patients/%s/shared-tags' % p)) | |
| 1332 self.assertTrue('StudyDescription' in DoGet(_REMOTE, '/patients/%s/shared-tags?simplify' % p)) | |
| 1333 self.assertTrue('0008,103e' in DoGet(_REMOTE, '/patients/%s/shared-tags' % p)) | |
| 1334 self.assertTrue('SeriesDescription' in DoGet(_REMOTE, '/patients/%s/shared-tags?simplify' % p)) | |
| 1335 self.assertFalse('0008,0018' in DoGet(_REMOTE, '/patients/%s/shared-tags' % p)) | |
| 1336 self.assertFalse('SOPInstanceUID' in DoGet(_REMOTE, '/patients/%s/shared-tags?simplify' % p)) | |
| 1337 | |
| 1338 self.assertTrue('0008,0018' in DoGet(_REMOTE, '/instances/%s/tags' % a)) | |
| 1339 self.assertTrue('SOPInstanceUID' in DoGet(_REMOTE, '/instances/%s/tags?simplify' % a)) | |
| 1340 | |
| 1341 | |
| 1342 def test_modules(self): | |
| 1343 a = UploadInstance(_REMOTE, 'Knee/T1/IM-0001-0001.dcm')['ID'] | |
| 1344 p = DoGet(_REMOTE, '/patients')[0] | |
| 1345 s = DoGet(_REMOTE, '/studies')[0] | |
| 1346 t = DoGet(_REMOTE, '/series')[0] | |
| 1347 | |
| 1348 self.assertTrue('0010,0010' in DoGet(_REMOTE, '/patients/%s/module' % p)) | |
| 1349 self.assertTrue('PatientName' in DoGet(_REMOTE, '/patients/%s/module?simplify' % p)) | |
| 1350 self.assertTrue('0010,0010' in DoGet(_REMOTE, '/studies/%s/module-patient' % p)) | |
| 1351 self.assertTrue('PatientName' in DoGet(_REMOTE, '/studies/%s/module-patient?simplify' % p)) | |
| 1352 self.assertTrue('0008,1030' in DoGet(_REMOTE, '/studies/%s/module' % s)) | |
| 1353 self.assertTrue('StudyDescription' in DoGet(_REMOTE, '/studies/%s/module?simplify' % s)) | |
| 1354 self.assertTrue('0008,103e' in DoGet(_REMOTE, '/series/%s/module' % p)) | |
| 1355 self.assertTrue('SeriesDescription' in DoGet(_REMOTE, '/series/%s/module?simplify' % p)) | |
| 1356 self.assertTrue('0008,0018' in DoGet(_REMOTE, '/instances/%s/module' % a)) | |
| 1357 self.assertTrue('SOPInstanceUID' in DoGet(_REMOTE, '/instances/%s/module?simplify' % a)) | |
| 1358 | |
| 1359 | |
| 1360 def test_auto_directory(self): | |
| 1361 a = UploadInstance(_REMOTE, 'Knee/T1/IM-0001-0001.dcm')['ID'] | |
| 1362 self.assertTrue('now' in DoGet(_REMOTE, '/tools')) | |
| 1363 self.assertTrue('dicom-conformance' in DoGet(_REMOTE, '/tools')) | |
| 1364 self.assertTrue(len(DoGet(_REMOTE, '/tools/dicom-conformance')) > 1000) | |
| 1365 self.assertTrue('orthanctest' in DoGet(_REMOTE, '/modalities')) | |
| 1366 self.assertTrue('echo' in DoGet(_REMOTE, '/modalities/orthanctest')) | |
| 1367 self.assertTrue('find' in DoGet(_REMOTE, '/modalities/orthanctest')) | |
| 1368 self.assertTrue('find-instance' in DoGet(_REMOTE, '/modalities/orthanctest')) | |
| 1369 self.assertTrue('find-patient' in DoGet(_REMOTE, '/modalities/orthanctest')) | |
| 1370 self.assertTrue('find-series' in DoGet(_REMOTE, '/modalities/orthanctest')) | |
| 1371 self.assertTrue('find-study' in DoGet(_REMOTE, '/modalities/orthanctest')) | |
| 1372 self.assertTrue('store' in DoGet(_REMOTE, '/modalities/orthanctest')) | |
| 1373 self.assertTrue('store' in DoGet(_REMOTE, '/peers/peer')) | |
| 1374 self.assertTrue('matlab' in DoGet(_REMOTE, '/instances/%s/frames/0' % a)) | |
| 79 | 1375 self.assertTrue('raw' in DoGet(_REMOTE, '/instances/%s/frames/0' % a)) |
| 13 | 1376 self.assertRaises(Exception, lambda: DoGet(_REMOTE, '/tools/nope')) |
| 28 | 1377 self.assertRaises(Exception, lambda: DoGet(_REMOTE, '/nope')) |
| 1378 self.assertRaises(Exception, lambda: DoGet(_REMOTE, '/nope/nope.html')) | |
| 1379 self.assertEqual(404, DoGetRaw(_REMOTE, '/nope')[0].status) | |
| 1380 self.assertEqual(404, DoGetRaw(_REMOTE, '/nope/nope.html')[0].status) | |
| 13 | 1381 |
| 1382 | |
| 1383 def test_echo(self): | |
| 1384 DoPost(_REMOTE, '/modalities/orthanctest/echo') | |
| 1385 | |
| 1386 | |
| 1387 def test_xml(self): | |
| 1388 json = DoGet(_REMOTE, '/tools', headers = { 'accept' : 'application/json' }) | |
| 1389 xml = minidom.parseString(DoGet(_REMOTE, '/tools', headers = { 'accept' : 'application/xml' })) | |
| 1390 items = xml.getElementsByTagName('root')[0].getElementsByTagName('item') | |
| 1391 self.assertEqual(len(items), len(json)) | |
| 1392 | |
| 1393 self.assertTrue('dicom-conformance' in json) | |
| 1394 | |
| 1395 ok = False | |
| 1396 for i in items: | |
| 1397 if i.childNodes[0].data == 'dicom-conformance': | |
| 1398 ok = True | |
| 1399 self.assertTrue(ok) | |
| 1400 | |
| 1401 | |
|
46
85b2e36ed392
explicit GoogleCode source
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
45
diff
changeset
|
1402 def test_googlecode_issue_16(self): |
| 13 | 1403 i = UploadInstance(_REMOTE, 'Issue16.dcm')['ID'] |
| 1404 t = DoGet(_REMOTE, '/instances/%s/tags?simplify' % i)['FrameIncrementPointer'] | |
| 1405 self.assertEqual('0018,1063', t) | |
| 1406 | |
| 1407 | |
|
46
85b2e36ed392
explicit GoogleCode source
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
45
diff
changeset
|
1408 def test_googlecode_issue_22(self): |
| 13 | 1409 s = UploadInstance(_REMOTE, 'Issue22.dcm')['ID'] |
| 1410 a = [ | |
| 1411 "f804691f62197040438f4627c6b994f1", # Frame 0 | |
| 1412 "c69eee9a51eea3e8611e82e578897254", | |
| 1413 "315666be83e2d0111c77bc0996d84901", | |
| 1414 "3e27aa959d911172c48a1436443c72b1", | |
| 1415 "958642c9e7e9d232d3869faff546058c", | |
| 1416 "5e7ea8e3e4230cae707d143481355c59", | |
| 1417 "eda37f83558d858a596175aed8b2ad47", | |
| 1418 "486713bd2895c4ecbe0e97715ac7f80a", | |
| 1419 "091ef729eb169e67da8a0faa9631f9a8", | |
| 1420 "5aa2b8c7ffe0a483efaa8e12417686ca", | |
| 1421 "e2f39e85896fe58876654b94cd0b5013", | |
| 1422 "6fd2129e4950abbe1be053bc814d5da8", | |
| 1423 "c3331a8ba7a757f3d423735ab7fa81f9", | |
| 1424 "746f808582156734dd6b6fdfd3a0b72c", | |
| 1425 "8075ea2b227a70c60ea6b7b75a6bb190", | |
| 1426 "806b8b3e300c615099c11a5ec23465aa", | |
| 1427 "7c836aa298ba6eef96434579af631a11", | |
| 1428 "a0357dc9f4f72d73a885c33d7c287446", | |
| 1429 "f25ba3be1cc7d7fad95706adc199ea7d", | |
| 1430 "8b114c526b8cbed6cad8a3248b7b480c", | |
| 1431 "44e6670f127e612a2b4aa60a0d207698", | |
| 1432 "b8945f90fe02facf2ace24ca1ecbe0a5", | |
| 1433 "95c796c2fa8f59018b15cf2987b1f79b", | |
| 1434 "ce0a51ab30224205b44920221dc27351", # Frame 23 | |
| 1435 ] | |
| 1436 | |
| 1437 self.assertEqual(24, len(DoGet(_REMOTE, '/instances/%s/frames' % s))) | |
| 1438 self.assertRaises(Exception, lambda: DoGet(_REMOTE, '/instances/%s/frames/24/preview' % s)) | |
| 1439 | |
| 1440 for i in range(len(a)): | |
| 1441 self.assertEqual(a[i], ComputeMD5(DoGet(_REMOTE, '/instances/%s/frames/%d/preview' % (s, i)))) | |
| 1442 | |
| 1443 | |
|
46
85b2e36ed392
explicit GoogleCode source
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
45
diff
changeset
|
1444 def test_googlecode_issue_19(self): |
|
21
2a29bcff60a7
tests of image decoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
18
diff
changeset
|
1445 # This is an image with "YBR_FULL" photometric interpretation, it is not supported by Orthanc |
| 13 | 1446 # gdcmconv -i /home/jodogne/DICOM/GdcmDatabase/US_DataSet/HDI5000_US/3EAF5E01 -w -o Issue19.dcm |
| 1447 | |
| 1448 a = UploadInstance(_REMOTE, 'Issue19.dcm')['ID'] | |
|
21
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tests of image decoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
18
diff
changeset
|
1449 self.assertRaises(Exception, lambda: DoGet(_REMOTE, '/instances/941ad3c8-05d05b88-560459f9-0eae0e20-6cddd533/preview')) |
| 13 | 1450 |
| 1451 | |
|
46
85b2e36ed392
explicit GoogleCode source
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
45
diff
changeset
|
1452 def test_googlecode_issue_37(self): |
| 13 | 1453 # Same test for issues 35 and 37. Fixed in Orthanc 0.9.1 |
| 1454 u = UploadInstance(_REMOTE, 'Beaufix/IM-0001-0001.dcm')['ID'] | |
| 1455 | |
| 1456 a = DoPost(_REMOTE, '/tools/find', { 'Level' : 'Series', | |
| 1457 'CaseSensitive' : True, | |
| 1458 'Query' : { 'StationName' : 'SMR4-MP3' }}) | |
| 1459 self.assertEqual(1, len(a)) | |
| 14 | 1460 |
| 1461 | |
| 1462 def test_rest_find(self): | |
| 1463 # Upload 8 instances | |
| 1464 for i in range(2): | |
| 1465 UploadInstance(_REMOTE, 'Brainix/Flair/IM-0001-000%d.dcm' % (i + 1)) | |
| 1466 UploadInstance(_REMOTE, 'Brainix/Epi/IM-0001-000%d.dcm' % (i + 1)) | |
| 1467 UploadInstance(_REMOTE, 'Knee/T1/IM-0001-000%d.dcm' % (i + 1)) | |
| 1468 UploadInstance(_REMOTE, 'Knee/T2/IM-0001-000%d.dcm' % (i + 1)) | |
| 1469 | |
| 1470 a = DoPost(_REMOTE, '/tools/find', { 'Level' : 'Patient', | |
| 1471 'CaseSensitive' : False, | |
| 1472 'Query' : { 'PatientName' : '*n*' }}) | |
| 1473 self.assertEqual(2, len(a)) | |
| 1474 | |
| 1475 a = DoPost(_REMOTE, '/tools/find', { 'Level' : 'Patient', | |
| 1476 'CaseSensitive' : True, | |
| 1477 'Query' : { 'PatientName' : '*n*' }}) | |
| 1478 self.assertEqual(0, len(a)) | |
| 1479 | |
| 1480 a = DoPost(_REMOTE, '/tools/find', { 'Expand' : True, | |
| 1481 'Level' : 'Patient', | |
| 1482 'CaseSensitive' : False, | |
| 1483 'Query' : { 'PatientName' : '*ne*' }}) | |
| 1484 self.assertEqual(1, len(a)) | |
| 1485 self.assertEqual('20080822', a[0]['MainDicomTags']['PatientBirthDate']) | |
| 1486 | |
| 1487 a = DoPost(_REMOTE, '/tools/find', { 'Level' : 'Patient', | |
| 1488 'CaseSensitive' : True, | |
| 1489 'Query' : { 'PatientName' : '*ne*' }}) | |
| 1490 self.assertEqual(0, len(a)) | |
| 1491 | |
| 1492 a = DoPost(_REMOTE, '/tools/find', { 'Level' : 'Study', | |
| 1493 'CaseSensitive' : True, | |
| 1494 'Query' : { 'PatientName' : '*NE*' }}) | |
| 1495 self.assertEqual(1, len(a)) | |
| 1496 | |
| 1497 a = DoPost(_REMOTE, '/tools/find', { 'Level' : 'Series', | |
| 1498 'CaseSensitive' : True, | |
| 1499 'Query' : { 'PatientName' : '*NE*' }}) | |
| 1500 self.assertEqual(2, len(a)) | |
| 1501 | |
| 1502 a = DoPost(_REMOTE, '/tools/find', { 'Level' : 'Instance', | |
| 1503 'CaseSensitive' : True, | |
| 1504 'Query' : { 'PatientName' : '*NE*' }}) | |
| 1505 self.assertEqual(4, len(a)) | |
| 1506 | |
| 1507 a = DoPost(_REMOTE, '/tools/find', { 'Level' : 'Patient', 'Query' : { }}) | |
| 1508 self.assertEqual(2, len(a)) | |
| 1509 | |
| 1510 a = DoPost(_REMOTE, '/tools/find', { 'Level' : 'Study', 'Query' : { }}) | |
| 1511 self.assertEqual(2, len(a)) | |
| 1512 | |
| 1513 a = DoPost(_REMOTE, '/tools/find', { 'Level' : 'Series', 'Query' : { }}) | |
| 1514 self.assertEqual(4, len(a)) | |
| 1515 | |
| 1516 a = DoPost(_REMOTE, '/tools/find', { 'Level' : 'Instance', 'Query' : { }}) | |
| 1517 self.assertEqual(8, len(a)) | |
| 1518 | |
| 1519 | |
| 1520 def test_rest_query_retrieve(self): | |
| 1521 self.assertEqual(0, len(DoGet(_REMOTE, '/patients'))) | |
| 1522 | |
| 1523 # Upload 8 instances | |
| 1524 for i in range(2): | |
| 1525 UploadInstance(_REMOTE, 'Brainix/Flair/IM-0001-000%d.dcm' % (i + 1)) | |
| 1526 UploadInstance(_REMOTE, 'Brainix/Epi/IM-0001-000%d.dcm' % (i + 1)) | |
| 1527 UploadInstance(_REMOTE, 'Knee/T1/IM-0001-000%d.dcm' % (i + 1)) | |
| 1528 UploadInstance(_REMOTE, 'Knee/T2/IM-0001-000%d.dcm' % (i + 1)) | |
| 1529 | |
| 1530 self.assertEqual(2, len(DoGet(_REMOTE, '/patients'))) | |
| 1531 for p in DoGet(_REMOTE, '/patients'): | |
| 1532 DoPost(_REMOTE, '/modalities/orthanctest/store', p) | |
| 1533 DoDelete(_REMOTE, '/patients/%s' % p) | |
| 1534 | |
| 1535 for q in DoGet(_REMOTE, '/queries'): | |
| 1536 DoDelete(_REMOTE, '/queries/%s' % q) | |
| 1537 | |
| 1538 self.assertEqual(0, len(DoGet(_REMOTE, '/patients'))) | |
| 1539 self.assertEqual(0, len(DoGet(_REMOTE, '/queries'))) | |
| 1540 a = DoPost(_REMOTE, '/modalities/orthanctest/query', { 'Level' : 'Series', | |
| 27 | 1541 'Query' : { |
| 1542 'PatientName' : '*NE*', | |
| 1543 'StudyDate' : '*', | |
| 1544 }})['ID'] | |
| 14 | 1545 self.assertEqual(1, len(DoGet(_REMOTE, '/queries'))) |
| 1546 | |
| 1547 b = DoGet(_REMOTE, '/queries/%s' % a) | |
| 1548 self.assertTrue('answers' in b) | |
| 1549 self.assertTrue('level' in b) | |
| 1550 self.assertTrue('modality' in b) | |
| 1551 self.assertTrue('query' in b) | |
| 1552 self.assertTrue('retrieve' in b) | |
| 1553 self.assertEqual('Series', DoGet(_REMOTE, '/queries/%s/level' % a)) | |
| 1554 self.assertEqual('orthanctest', DoGet(_REMOTE, '/queries/%s/modality' % a)) | |
| 1555 | |
| 1556 q = DoGet(_REMOTE, '/queries/%s/query?simplify' % a) | |
| 27 | 1557 self.assertEqual(2, len(q)) |
| 14 | 1558 self.assertTrue('PatientName' in q) |
| 27 | 1559 self.assertTrue('StudyDate' in q) |
| 14 | 1560 self.assertEqual('*NE*', q['PatientName']) |
| 27 | 1561 self.assertEqual('*', q['StudyDate']) |
| 14 | 1562 |
| 1563 self.assertEqual(2, len(DoGet(_REMOTE, '/queries/%s/answers' % a))) | |
| 1564 | |
| 1565 s = DoGet(_REMOTE, '/queries/%s/answers/0' % a) | |
| 1566 self.assertTrue('content' in s) | |
| 1567 self.assertTrue('retrieve' in s) | |
| 1568 | |
| 1569 s = DoGet(_REMOTE, '/queries/%s/answers/0/content?simplify' % a) | |
| 1570 self.assertEqual('887', s['PatientID']) | |
| 1571 self.assertEqual('2.16.840.1.113669.632.20.121711.10000160881', s['StudyInstanceUID']) | |
| 1572 | |
| 1573 self.assertEqual(0, len(DoGet(_REMOTE, '/patients'))) | |
| 1574 DoPost(_REMOTE, '/queries/%s/answers/0/retrieve' % a, 'ORTHANC') | |
| 1575 self.assertEqual(1, len(DoGet(_REMOTE, '/patients'))) | |
| 1576 self.assertEqual(1, len(DoGet(_REMOTE, '/studies'))) | |
| 1577 self.assertEqual(1, len(DoGet(_REMOTE, '/series'))) | |
| 1578 self.assertEqual(2, len(DoGet(_REMOTE, '/instances'))) | |
| 1579 | |
| 1580 DoPost(_REMOTE, '/queries/%s/answers/1/retrieve' % a, 'ORTHANC') | |
| 1581 self.assertEqual(1, len(DoGet(_REMOTE, '/patients'))) | |
| 1582 self.assertEqual(1, len(DoGet(_REMOTE, '/studies'))) | |
| 1583 self.assertEqual(2, len(DoGet(_REMOTE, '/series'))) | |
| 1584 self.assertEqual(4, len(DoGet(_REMOTE, '/instances'))) | |
| 1585 | |
| 1586 DoDelete(_REMOTE, '/queries/%s' % a) | |
| 1587 self.assertEqual(0, len(DoGet(_REMOTE, '/queries'))) | |
| 1588 | |
| 1589 | |
| 1590 def test_parent(self): | |
| 1591 u = UploadInstance(_REMOTE, 'DummyCT.dcm')['ID'] | |
| 1592 patient = '6816cb19-844d5aee-85245eba-28e841e6-2414fae2' | |
| 1593 study = 'b9c08539-26f93bde-c81ab0d7-bffaf2cb-a4d0bdd0' | |
| 1594 series = 'f2635388-f01d497a-15f7c06b-ad7dba06-c4c599fe' | |
| 1595 instance = '66a662ce-7430e543-bad44d47-0dc5a943-ec7a538d' | |
| 1596 self.assertEqual(instance, u); | |
| 1597 | |
| 1598 a = DoGet(_REMOTE, '/studies/%s/patient' % study) | |
| 1599 self.assertEqual('Patient', a['Type']) | |
| 1600 self.assertEqual(patient, a['ID']) | |
| 1601 | |
| 1602 a = DoGet(_REMOTE, '/series/%s/patient' % series) | |
| 1603 self.assertEqual('Patient', a['Type']) | |
| 1604 self.assertEqual(patient, a['ID']) | |
| 1605 | |
| 1606 a = DoGet(_REMOTE, '/series/%s/study' % series) | |
| 1607 self.assertEqual('Study', a['Type']) | |
| 1608 self.assertEqual(study, a['ID']) | |
| 1609 | |
| 1610 a = DoGet(_REMOTE, '/instances/%s/patient' % instance) | |
| 1611 self.assertEqual('Patient', a['Type']) | |
| 1612 self.assertEqual(patient, a['ID']) | |
| 1613 | |
| 1614 a = DoGet(_REMOTE, '/instances/%s/study' % instance) | |
| 1615 self.assertEqual('Study', a['Type']) | |
| 1616 self.assertEqual(study, a['ID']) | |
| 1617 | |
| 1618 a = DoGet(_REMOTE, '/instances/%s/series' % instance) | |
| 1619 self.assertEqual('Series', a['Type']) | |
| 1620 self.assertEqual(series, a['ID']) | |
| 1621 | |
| 1622 | |
| 1623 def test_shanon(self): | |
| 1624 def Anonymize(instance, replacements = {}): | |
| 1625 return DoPost(_REMOTE, '/instances/%s/anonymize' % instance, { 'Replace' : replacements }, 'application/json') | |
| 1626 | |
| 1627 self.assertEqual(0, len(DoGet(_REMOTE, '/instances'))) | |
| 1628 u = UploadInstance(_REMOTE, 'DummyCT.dcm')['ID'] | |
| 1629 self.assertEqual(1, len(DoGet(_REMOTE, '/instances'))) | |
| 1630 | |
| 1631 tags = [ 'PatientID', 'StudyInstanceUID', 'SeriesInstanceUID', 'SOPInstanceUID', 'DeidentificationMethod' ] | |
| 1632 ids = [ 'ozp00SjY2xG', | |
| 1633 '1.2.840.113619.2.176.2025.1499492.7391.1171285944.390', | |
| 1634 '1.2.840.113619.2.176.2025.1499492.7391.1171285944.394', | |
| 1635 '1.2.840.113619.2.176.2025.1499492.7040.1171286242.109' ] | |
| 1636 | |
| 1637 a = ExtractDicomTags(Anonymize(u), tags) | |
| 1638 for i in range(4): | |
| 1639 self.assertNotEqual(ids[i], a[i]) | |
| 1640 self.assertTrue(a[4].startswith('Orthanc')) | |
| 1641 | |
| 1642 a = ExtractDicomTags(Anonymize(u, { 'PatientName' : 'toto' }), tags) | |
| 1643 for i in range(4): | |
| 1644 self.assertNotEqual(ids[i], a[i]) | |
| 1645 self.assertFalse(a[4].startswith('Orthanc')) | |
| 1646 | |
| 1647 a = ExtractDicomTags(Anonymize(u, { 'SOPInstanceUID' : 'instance' }), tags) | |
| 1648 self.assertEqual('instance', a[3]) | |
| 1649 self.assertFalse(a[4].startswith('Orthanc')) | |
| 1650 | |
| 1651 a = ExtractDicomTags(Anonymize(u, { 'SeriesInstanceUID' : 'series' }), tags) | |
| 1652 self.assertEqual('series', a[2]) | |
| 1653 self.assertFalse(a[4].startswith('Orthanc')) | |
| 1654 | |
| 1655 a = ExtractDicomTags(Anonymize(u, { 'StudyInstanceUID' : 'study' }), tags) | |
| 1656 self.assertEqual('study', a[1]) | |
| 1657 self.assertFalse(a[4].startswith('Orthanc')) | |
| 1658 | |
| 1659 a = ExtractDicomTags(Anonymize(u, { 'PatientID' : 'patient' }), tags) | |
| 1660 self.assertEqual('patient', a[0]) | |
| 1661 self.assertFalse(a[4].startswith('Orthanc')) | |
| 1662 | |
| 1663 a = ExtractDicomTags(Anonymize(u, { 'PatientID' : 'patient', | |
| 1664 'StudyInstanceUID' : 'study', | |
| 1665 'SeriesInstanceUID' : 'series', | |
| 1666 'SOPInstanceUID' : 'instance' }), tags) | |
| 1667 self.assertEqual('patient', a[0]) | |
| 1668 self.assertFalse(a[4].startswith('Orthanc')) | |
| 1669 | |
| 1670 self.assertEqual(1, len(DoGet(_REMOTE, '/instances'))) | |
| 1671 | |
| 1672 | |
| 1673 def test_shanon_2(self): | |
| 1674 def Modify(instance, replacements = {}): | |
| 1675 return DoPost(_REMOTE, '/instances/%s/modify' % instance, { 'Replace' : replacements }, 'application/json') | |
| 1676 | |
| 1677 self.assertEqual(0, len(DoGet(_REMOTE, '/instances'))) | |
| 1678 u = UploadInstance(_REMOTE, 'DummyCT.dcm')['ID'] | |
| 1679 self.assertEqual(1, len(DoGet(_REMOTE, '/instances'))) | |
| 1680 | |
| 1681 tags = [ 'PatientID', 'StudyInstanceUID', 'SeriesInstanceUID', 'SOPInstanceUID', 'DeidentificationMethod' ] | |
| 1682 ids = [ 'ozp00SjY2xG', | |
| 1683 '1.2.840.113619.2.176.2025.1499492.7391.1171285944.390', | |
| 1684 '1.2.840.113619.2.176.2025.1499492.7391.1171285944.394', | |
| 1685 '1.2.840.113619.2.176.2025.1499492.7040.1171286242.109' ] | |
| 1686 | |
| 1687 a = ExtractDicomTags(Modify(u), tags) | |
| 1688 self.assertEqual(ids[0], a[0]) | |
| 1689 self.assertEqual(ids[1], a[1]) | |
| 1690 self.assertEqual(ids[2], a[2]) | |
| 1691 self.assertNotEqual(ids[3], a[3]) | |
| 1692 self.assertEqual(0, len(a[4])) | |
| 1693 | |
| 1694 a = ExtractDicomTags(Modify(u, { 'SOPInstanceUID' : 'instance' }), tags) | |
| 1695 self.assertEqual(ids[0], a[0]) | |
| 1696 self.assertEqual(ids[1], a[1]) | |
| 1697 self.assertEqual(ids[2], a[2]) | |
| 1698 self.assertEqual('instance', a[3]) | |
| 1699 | |
| 1700 a = ExtractDicomTags(Modify(u, { 'SeriesInstanceUID' : 'series' }), tags) | |
| 1701 self.assertEqual(ids[0], a[0]) | |
| 1702 self.assertEqual(ids[1], a[1]) | |
| 1703 self.assertEqual('series', a[2]) | |
| 1704 self.assertNotEqual(ids[3], a[3]) | |
| 1705 | |
| 1706 a = ExtractDicomTags(Modify(u, { 'StudyInstanceUID' : 'study' }), tags) | |
| 1707 self.assertEqual(ids[0], a[0]) | |
| 1708 self.assertEqual('study', a[1]) | |
| 1709 self.assertNotEqual(ids[2], a[2]) | |
| 1710 self.assertNotEqual(ids[3], a[3]) | |
| 1711 | |
| 1712 a = ExtractDicomTags(Modify(u, { 'PatientID' : 'patient' }), tags) | |
| 1713 self.assertEqual('patient', a[0]) | |
| 1714 self.assertNotEqual(ids[1], a[1]) | |
| 1715 self.assertNotEqual(ids[2], a[2]) | |
| 1716 self.assertNotEqual(ids[3], a[3]) | |
| 1717 | |
| 1718 a = ExtractDicomTags(Modify(u, { 'PatientID' : 'patient', | |
| 1719 'StudyInstanceUID' : 'study', | |
| 1720 'SeriesInstanceUID' : 'series', | |
| 1721 'SOPInstanceUID' : 'instance' }), tags) | |
| 1722 self.assertEqual('patient', a[0]) | |
| 1723 self.assertEqual('study', a[1]) | |
| 1724 self.assertEqual('series', a[2]) | |
| 1725 self.assertEqual('instance', a[3]) | |
| 1726 | |
| 1727 self.assertEqual(1, len(DoGet(_REMOTE, '/instances'))) | |
| 1728 | |
| 1729 | |
| 1730 def test_instances_tags(self): | |
| 1731 a = UploadInstance(_REMOTE, 'Knee/T1/IM-0001-0001.dcm')['ID'] | |
| 1732 b = UploadInstance(_REMOTE, 'Knee/T2/IM-0001-0001.dcm')['ID'] | |
| 1733 #a = UploadInstance(_REMOTE, 'Cardiac/MR.X.1.2.276.0.7230010.3.1.4.2831157719.2256.1336386937.676343')['ID'] | |
| 1734 #b = UploadInstance(_REMOTE, 'Cardiac/MR.X.1.2.276.0.7230010.3.1.4.2831157719.2256.1336386925.676329')['ID'] | |
| 1735 | |
| 1736 i = DoGet(_REMOTE, '/patients/%s/instances-tags?simplify' % DoGet(_REMOTE, '/patients')[0]) | |
| 1737 self.assertEqual(2, len(i)) | |
| 1738 self.assertEqual('887', i[i.keys()[0]]['PatientID']) | |
| 1739 self.assertEqual('887', i[i.keys()[1]]['PatientID']) | |
| 1740 | |
| 1741 i = DoGet(_REMOTE, '/patients/%s/instances-tags?simplify' % DoGet(_REMOTE, '/studies')[0]) | |
| 1742 self.assertEqual(2, len(i)) | |
| 1743 self.assertEqual('887', i[i.keys()[0]]['PatientID']) | |
| 1744 self.assertEqual('887', i[i.keys()[1]]['PatientID']) | |
| 1745 | |
| 1746 self.assertEqual(2, len(DoGet(_REMOTE, '/series'))) | |
| 1747 i = DoGet(_REMOTE, '/patients/%s/instances-tags?simplify' % DoGet(_REMOTE, '/series')[0]) | |
| 1748 self.assertEqual(1, len(i)) | |
| 1749 self.assertEqual('887', i[i.keys()[0]]['PatientID']) | |
| 1750 | |
| 1751 i = DoGet(_REMOTE, '/patients/%s/instances-tags?simplify' % DoGet(_REMOTE, '/series')[1]) | |
| 1752 self.assertEqual(1, len(i)) | |
| 1753 self.assertEqual('887', i[i.keys()[0]]['PatientID']) | |
| 1754 | |
| 1755 | |
| 1756 def test_lookup(self): | |
| 1757 a = DoPost(_REMOTE, '/tools/lookup', 'ozp00SjY2xG') | |
| 1758 self.assertEqual(0, len(a)) | |
| 1759 | |
| 1760 UploadInstance(_REMOTE, 'DummyCT.dcm') | |
| 1761 | |
| 1762 a = DoPost(_REMOTE, '/tools/lookup', 'ozp00SjY2xG') | |
| 1763 self.assertEqual(1, len(a)) | |
| 1764 self.assertEqual('Patient', a[0]['Type']) | |
| 1765 self.assertEqual('6816cb19-844d5aee-85245eba-28e841e6-2414fae2', a[0]['ID']) | |
| 1766 self.assertEqual('/patients/%s' % a[0]['ID'], a[0]['Path']) | |
| 1767 | |
| 1768 a = DoPost(_REMOTE, '/tools/lookup', '1.2.840.113619.2.176.2025.1499492.7391.1171285944.390') | |
| 1769 self.assertEqual(1, len(a)) | |
| 1770 self.assertEqual('Study', a[0]['Type']) | |
| 1771 self.assertEqual('b9c08539-26f93bde-c81ab0d7-bffaf2cb-a4d0bdd0', a[0]['ID']) | |
| 1772 self.assertEqual('/studies/%s' % a[0]['ID'], a[0]['Path']) | |
| 1773 | |
| 1774 a = DoPost(_REMOTE, '/tools/lookup', '1.2.840.113619.2.176.2025.1499492.7391.1171285944.394') | |
| 1775 self.assertEqual(1, len(a)) | |
| 1776 self.assertEqual('Series', a[0]['Type']) | |
| 1777 self.assertEqual('f2635388-f01d497a-15f7c06b-ad7dba06-c4c599fe', a[0]['ID']) | |
| 1778 self.assertEqual('/series/%s' % a[0]['ID'], a[0]['Path']) | |
| 1779 | |
| 1780 a = DoPost(_REMOTE, '/tools/lookup', '1.2.840.113619.2.176.2025.1499492.7040.1171286242.109') | |
| 1781 self.assertEqual(1, len(a)) | |
| 1782 self.assertEqual('Instance', a[0]['Type']) | |
| 1783 self.assertEqual('66a662ce-7430e543-bad44d47-0dc5a943-ec7a538d', a[0]['ID']) | |
| 1784 self.assertEqual('/instances/%s' % a[0]['ID'], a[0]['Path']) | |
| 1785 | |
| 1786 DropOrthanc(_REMOTE) | |
| 1787 a = DoPost(_REMOTE, '/tools/lookup', '3113719P') | |
| 1788 self.assertEqual(0, len(a)) | |
| 1789 | |
| 15 | 1790 |
| 1791 def test_autorouting(self): | |
| 1792 knee1 = 'Knee/T1/IM-0001-0001.dcm' | |
| 1793 knee2 = 'Knee/T2/IM-0001-0002.dcm' | |
| 1794 other = 'Brainix/Flair/IM-0001-0001.dcm' | |
| 1795 | |
| 1796 # Check that this version is >= 0.8.0 | |
| 1797 self.assertTrue(IsDefinedInLua(_REMOTE, '_InitializeJob')) | |
| 1798 self.assertTrue('orthanctest' in DoGet(_REMOTE, '/modalities')) | |
| 1799 | |
| 1800 UploadInstance(_REMOTE, knee1) | |
| 1801 self.assertEqual(0, len(DoGet(_LOCAL, '/instances'))) | |
| 1802 | |
| 1803 DropOrthanc(_REMOTE) | |
| 1804 DropOrthanc(_LOCAL) | |
| 1805 InstallLuaScript('Lua/Autorouting.lua') | |
| 1806 UploadInstance(_REMOTE, knee1) | |
| 1807 UploadInstance(_REMOTE, knee2) | |
| 1808 UploadInstance(_REMOTE, other) | |
| 1809 WaitEmpty(_REMOTE) | |
| 1810 UninstallLuaCallbacks() | |
| 1811 self.assertEqual(3, len(DoGet(_LOCAL, '/instances'))) | |
| 1812 | |
| 1813 DropOrthanc(_REMOTE) | |
| 1814 DropOrthanc(_LOCAL) | |
| 1815 InstallLuaScript('Lua/AutoroutingConditional.lua') | |
| 1816 UploadInstance(_REMOTE, knee1) | |
| 1817 UploadInstance(_REMOTE, knee2) | |
| 1818 UploadInstance(_REMOTE, other) | |
| 1819 WaitEmpty(_REMOTE) | |
| 1820 UninstallLuaCallbacks() | |
| 1821 self.assertEqual(2, len(DoGet(_LOCAL, '/instances'))) | |
| 1822 | |
| 1823 DropOrthanc(_REMOTE) | |
| 1824 DropOrthanc(_LOCAL) | |
| 1825 InstallLuaScript('Lua/AutoroutingModification.lua') | |
| 1826 UploadInstance(_REMOTE, knee1) | |
| 1827 WaitEmpty(_REMOTE) | |
| 1828 UninstallLuaCallbacks() | |
| 1829 i = DoGet(_LOCAL, '/instances') | |
| 1830 self.assertEqual(1, len(i)) | |
| 1831 | |
| 1832 with tempfile.NamedTemporaryFile(delete = True) as f: | |
| 1833 f.write(DoGet(_LOCAL, '/instances/%s/file' % i[0])) | |
| 1834 f.flush() | |
| 45 | 1835 routed = subprocess.check_output([ FindExecutable('dcm2xml'), f.name ]) |
| 15 | 1836 self.assertEqual('My Medical Device', re.search('"StationName">(.*?)<', routed).group(1).strip()) |
| 1837 self.assertEqual(None, re.search('"MilitaryRank"', routed)) | |
| 1838 self.assertEqual(None, re.search('"0051,0010"', routed)) # A private tag | |
| 17 | 1839 |
| 1840 | |
| 1841 def test_storescu_rf(self): | |
| 1842 i = UploadInstance(_REMOTE, 'KarstenHilbertRF.dcm')['ID'] | |
| 1843 self.assertEqual(0, len(DoGet(_LOCAL, '/instances'))) | |
| 1844 j = DoPost(_REMOTE, '/modalities/orthanctest/store', str(i), 'text/plain') | |
| 1845 self.assertEqual(1, len(DoGet(_LOCAL, '/instances'))) | |
| 18 | 1846 |
| 1847 | |
| 1848 def test_anonymize_instance(self): | |
| 1849 def AnonymizeAndUpload(instanceId, parameters): | |
| 1850 return DoPost(_REMOTE, '/instances', DoPost(_REMOTE, '/instances/%s/anonymize' % instanceId, parameters, | |
| 1851 'application/json'), 'application/dicom')['ID'] | |
| 1852 | |
| 1853 def ModifyAndUpload(instanceId, parameters): | |
| 1854 return DoPost(_REMOTE, '/instances', DoPost(_REMOTE, '/instances/%s/modify' % instanceId, parameters, | |
| 1855 'application/json'), 'application/dicom')['ID'] | |
| 1856 | |
| 1857 a = UploadInstance(_REMOTE, 'PrivateMDNTags.dcm')['ID'] | |
| 1858 s1 = DoGet(_REMOTE, '/instances/%s/content/PatientName' % a) | |
| 1859 s2 = DoGet(_REMOTE, '/instances/%s/content/00e1-10c2' % a) # Some private tag | |
| 1860 s3 = DoGet(_REMOTE, '/instances/%s/content/StudyDescription' % a) | |
| 1861 s4 = DoGet(_REMOTE, '/instances/%s/content/SeriesDescription' % a) | |
| 1862 s5 = DoGet(_REMOTE, '/instances/%s/content/InstitutionName' % a) | |
| 1863 | |
| 1864 b = AnonymizeAndUpload(a, '{}') | |
| 1865 self.assertNotEqual(s1, DoGet(_REMOTE, '/instances/%s/content/PatientName' % b)) | |
| 1866 self.assertRaises(Exception, lambda: DoGet(_REMOTE, '/instances/%s/content/00e1-10c2' % b)) | |
| 1867 | |
| 1868 # Keep private tag (only OK since Orthanc 0.8.0) | |
| 1869 b = AnonymizeAndUpload(a, '{"Keep":["00e1-10c2"]}') | |
| 1870 self.assertNotEqual(s1, DoGet(_REMOTE, '/instances/%s/content/PatientName' % b)) | |
| 1871 self.assertEqual(s2, DoGet(_REMOTE, '/instances/%s/content/00e1-10c2' % b)) | |
| 1872 | |
| 1873 b = AnonymizeAndUpload(a, '{"Keep":["00e1,10c2","PatientName"]}') | |
| 1874 self.assertEqual(s1, DoGet(_REMOTE, '/instances/%s/content/PatientName' % b)) | |
| 1875 self.assertEqual(s2, DoGet(_REMOTE, '/instances/%s/content/00e1-10c2' % b)) | |
| 1876 | |
| 1877 b = AnonymizeAndUpload(a, '{"Keep":["PatientName"],"Replace":{"00e1,10c2":"Hello"}}') | |
| 1878 self.assertEqual(s1, DoGet(_REMOTE, '/instances/%s/content/PatientName' % b)) | |
| 1879 self.assertTrue(DoGet(_REMOTE, '/instances/%s/content/00e1-10c2' % b).startswith('Hello')) | |
| 1880 | |
| 1881 # Examples from the Wiki | |
| 1882 b = AnonymizeAndUpload(a, '{"Replace":{"PatientName":"hello","0010-0020":"world"},"Keep":["StudyDescription", "SeriesDescription"],"KeepPrivateTags": null}') | |
| 1883 self.assertEqual('hello', DoGet(_REMOTE, '/instances/%s/content/0010-0010' % b).strip()) | |
| 1884 self.assertEqual('world', DoGet(_REMOTE, '/instances/%s/content/PatientID' % b).strip()) | |
| 1885 self.assertEqual(s3, DoGet(_REMOTE, '/instances/%s/content/0008,1030' % b)) | |
| 1886 self.assertEqual(s4, DoGet(_REMOTE, '/instances/%s/content/0008,103e' % b)) | |
| 1887 self.assertEqual(s4, DoGet(_REMOTE, '/instances/%s/content/0008-103E' % b)) | |
| 1888 self.assertEqual(s2, DoGet(_REMOTE, '/instances/%s/content/00e1-10c2' % b)) | |
| 1889 DoGet(_REMOTE, '/instances/%s/content/InstitutionName' % a) | |
| 1890 self.assertRaises(Exception, lambda: DoGet(_REMOTE, '/instances/%s/content/InstitutionName' % b)) | |
| 1891 | |
| 1892 b = ModifyAndUpload(a, '{"Replace":{"PatientName":"hello","PatientID":"world"},"Remove":["InstitutionName"],"RemovePrivateTags": null}') | |
| 1893 self.assertEqual('hello', DoGet(_REMOTE, '/instances/%s/content/0010-0010' % b).strip()) | |
| 1894 self.assertEqual('world', DoGet(_REMOTE, '/instances/%s/content/PatientID' % b).strip()) | |
| 1895 self.assertEqual(s3, DoGet(_REMOTE, '/instances/%s/content/0008,1030' % b)) | |
| 1896 self.assertEqual(s4, DoGet(_REMOTE, '/instances/%s/content/0008,103e' % b)) | |
| 1897 self.assertRaises(Exception, lambda: DoGet(_REMOTE, '/instances/%s/content/00e1-10c2' % b)) | |
| 1898 self.assertRaises(Exception, lambda: DoGet(_REMOTE, '/instances/%s/content/InstitutionName' % b)) | |
| 1899 | |
| 1900 b = ModifyAndUpload(a, '{"Replace":{"PatientName":"hello","PatientID":"world"}}') | |
| 1901 self.assertEqual('hello', DoGet(_REMOTE, '/instances/%s/content/0010-0010' % b).strip()) | |
| 1902 self.assertEqual('world', DoGet(_REMOTE, '/instances/%s/content/PatientID' % b).strip()) | |
| 1903 self.assertEqual(s2, DoGet(_REMOTE, '/instances/%s/content/00e1,10c2' % b)) | |
| 1904 self.assertEqual(s3, DoGet(_REMOTE, '/instances/%s/content/0008,1030' % b)) | |
| 1905 self.assertEqual(s4, DoGet(_REMOTE, '/instances/%s/content/0008-103E' % b)) | |
| 1906 self.assertEqual(s5, DoGet(_REMOTE, '/instances/%s/content/InstitutionName' % b)) | |
| 1907 | |
| 1908 | |
| 1909 # Test modify non-existing | |
| 1910 i = DoPost(_REMOTE, '/tools/create-dicom', | |
| 1911 json.dumps({ | |
| 1912 'PatientName' : 'Jodogne', | |
| 1913 'Modality' : 'CT', | |
| 1914 }))['ID'] | |
| 1915 | |
| 1916 self.assertEqual('Jodogne', DoGet(_REMOTE, '/instances/%s/content/PatientName' % i).strip()) | |
| 1917 self.assertRaises(Exception, lambda: DoGet(_REMOTE, '/instances/%s/content/StudyDescription' % i)) | |
| 1918 self.assertEqual('CT', DoGet(_REMOTE, '/instances/%s/content/Modality' % i).strip()) | |
| 1919 | |
| 1920 b = ModifyAndUpload(i, '{"Replace":{"StudyDescription":"hello","Modality":"world"}}') | |
| 1921 self.assertEqual('Jodogne', DoGet(_REMOTE, '/instances/%s/content/PatientName' % b).strip()) | |
| 1922 self.assertEqual('hello', DoGet(_REMOTE, '/instances/%s/content/StudyDescription' % b).strip()) | |
| 1923 self.assertEqual('world', DoGet(_REMOTE, '/instances/%s/content/Modality' % b).strip()) | |
| 1924 | |
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1925 |
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1926 def test_incoming_jpeg(self): |
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1927 def storescu(image, acceptUnknownSopClassUid): |
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1928 if acceptUnknownSopClassUid: |
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1929 tmp = [ '-xf', GetDatabasePath('UnknownSopClassUid.cfg'), 'Default' ] |
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1930 else: |
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1931 tmp = [ '-xs' ] |
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1932 |
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1933 with open(os.devnull, 'w') as FNULL: |
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1934 subprocess.check_call([ FindExecutable('storescu') ] + tmp + |
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1935 [ _REMOTE['Server'], str(_REMOTE['DicomPort']), |
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1936 GetDatabasePath(image) ], |
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1937 stderr = FNULL) |
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1938 |
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1939 self.assertEqual(0, len(DoGet(_REMOTE, '/patients'))) |
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1940 InstallLuaScript('Lua/TransferSyntaxDisable.lua') |
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1941 self.assertRaises(Exception, lambda: storescu('Knix/Loc/IM-0001-0001.dcm', False)) |
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1942 self.assertRaises(Exception, lambda: storescu('UnknownSopClassUid.dcm', True)) |
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1943 self.assertEqual(0, len(DoGet(_REMOTE, '/patients'))) |
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1944 InstallLuaScript('Lua/TransferSyntaxEnable.lua') |
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1945 DoPost(_REMOTE, '/tools/execute-script', "print('All special transfer syntaxes are now accepted')") |
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1946 storescu('Knix/Loc/IM-0001-0001.dcm', False) |
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1947 storescu('UnknownSopClassUid.dcm', True) |
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1948 self.assertEqual(2, len(DoGet(_REMOTE, '/patients'))) |
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1949 |
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1950 |
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1951 def test_storescu_jpeg(self): |
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1952 self.assertEqual(0, len(DoGet(_REMOTE, '/exports')['Exports'])) |
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1953 |
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1954 knixStudy = 'b9c08539-26f93bde-c81ab0d7-bffaf2cb-a4d0bdd0' |
| 64 | 1955 i = UploadInstance(_REMOTE, 'Knix/Loc/IM-0001-0001.dcm')['ID'] |
| 1956 | |
| 1957 # This is JPEG lossless | |
| 1958 self.assertEqual('1.2.840.10008.1.2.4.70', DoGet(_REMOTE, '/instances/%s/header?simplify' % i)['TransferSyntaxUID']) | |
| 1959 | |
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1960 UploadInstance(_REMOTE, 'Knix/Loc/IM-0001-0002.dcm') |
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1961 UploadInstance(_REMOTE, 'Knix/Loc/IM-0001-0003.dcm') |
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1962 |
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1963 a = UploadInstance(_REMOTE, 'Brainix/Flair/IM-0001-0001.dcm')['ID'] |
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1964 b = UploadInstance(_REMOTE, 'ColorTestImageJ.dcm')['ID'] |
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1965 self.assertEqual(0, len(DoGet(_LOCAL, '/instances'))) |
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1966 DoPost(_REMOTE, '/modalities/orthanctest/store', [ knixStudy, a, b ]) |
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1967 self.assertEqual(5, len(DoGet(_LOCAL, '/instances'))) |
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1968 |
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1969 self.assertEqual(3, len(DoGet(_REMOTE, '/exports')['Exports'])) |
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1970 |
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1971 DropOrthanc(_REMOTE) |
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1972 self.assertEqual(0, len(DoGet(_REMOTE, '/exports')['Exports'])) |
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1973 |
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1974 |
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1975 def test_pixel_data(self): |
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1976 jpeg = UploadInstance(_REMOTE, 'Knix/Loc/IM-0001-0001.dcm')['ID'] |
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1977 color = UploadInstance(_REMOTE, 'ColorTestImageJ.dcm')['ID'] |
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1978 phenix = UploadInstance(_REMOTE, 'Phenix/IM-0001-0001.dcm')['ID'] |
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1979 |
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1980 phenixSize = 358 * 512 * 2 |
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1981 colorSize = 1000 * 1000 * 3 |
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1982 jpegSize = 51918 |
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1983 |
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1984 self.assertEqual(1, len(DoGet(_REMOTE, '/instances/%s/content/7fe0-0010' % phenix))) |
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1985 self.assertEqual(1, len(DoGet(_REMOTE, '/instances/%s/content/7fe0-0010' % color))) |
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1986 self.assertEqual(2, len(DoGet(_REMOTE, '/instances/%s/content/7fe0-0010' % jpeg))) |
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1987 |
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1988 self.assertEqual(0, len(DoGet(_REMOTE, '/instances/%s/content/7fe0-0010/0' % jpeg))) |
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1989 self.assertEqual(jpegSize, len(DoGet(_REMOTE, '/instances/%s/content/7fe0-0010/1' % jpeg))) |
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1990 |
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1991 self.assertEqual(phenixSize, len(DoGet(_REMOTE, '/instances/%s/content/7fe0-0010/0' % phenix))) |
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1992 self.assertEqual(colorSize, len(DoGet(_REMOTE, '/instances/%s/content/7fe0-0010/0' % color))) |
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1993 |
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1994 |
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1995 def test_decode_brainix(self): |
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1996 brainix = [ |
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1997 UploadInstance(_REMOTE, 'Brainix/Epi/IM-0001-0001.dcm')['ID'], # (*) |
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1998 UploadInstance(_REMOTE, 'Formats/JpegLossless.dcm')['ID'], # JPEG-LS, same as (*) (since Orthanc 0.7.6) |
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1999 UploadInstance(_REMOTE, 'Formats/Jpeg.dcm')['ID'], # JPEG, same as (*) (since Orthanc 0.7.6) |
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2000 ] |
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2001 h = '6fb11b932d535c2be04beabd99793ff8' |
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2002 maxValue = 426.0 |
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2003 |
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2004 truth = Image.open(GetDatabasePath('Formats/Brainix.png')) |
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2005 for i in brainix: |
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2006 self.AssertSameImages(truth.getdata(), '/instances/%s/image-int16' % i) |
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2007 self.AssertSameImages(truth.getdata(), '/instances/%s/image-uint16' % i) |
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2008 |
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2009 truth2 = map(lambda x: min(255, x), truth.getdata()) |
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2010 for i in brainix: |
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2011 self.AssertSameImages(truth2, '/instances/%s/image-uint8' % i) |
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2012 |
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2013 truth2 = map(lambda x: x * 255.0 / maxValue, truth.getdata()) |
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2014 for i in brainix: |
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2015 self.AssertSameImages(truth2, '/instances/%s/preview' % i) |
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2016 |
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2017 for i in brainix: |
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2018 self.assertEqual(h, ComputeMD5(DoGet(_REMOTE, '/instances/%s/matlab' % i))) |
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2019 |
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2020 |
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2021 def test_decode_color(self): |
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2022 imagej = UploadInstance(_REMOTE, 'ColorTestImageJ.dcm')['ID'] |
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2023 color = UploadInstance(_REMOTE, 'ColorTestMalaterre.dcm')['ID'] |
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2024 |
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2025 for i in [ imagej, color ]: |
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2026 for j in [ 'image-uint8', 'image-uint16', 'image-int16' ]: |
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2027 self.assertRaises(Exception, lambda: DoGet(_REMOTE, '/instances/%s/%s' % (i, j))) |
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2028 |
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2029 self.assertEqual('c14c687f7a1ea9fe022479fc87c67274', ComputeMD5(DoGet(_REMOTE, '/instances/%s/preview' % imagej))) |
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2030 self.assertEqual('a87d122918a56f803bcfe9d2586b9125', ComputeMD5(DoGet(_REMOTE, '/instances/%s/preview' % color))) |
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2031 |
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2032 self.assertEqual('30cc46bfa7aba77a40e4178f6184c25a', ComputeMD5(DoGet(_REMOTE, '/instances/%s/matlab' % imagej))) |
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2033 self.assertEqual('ff195005cef06b59666fd220a9b4cd9a', ComputeMD5(DoGet(_REMOTE, '/instances/%s/matlab' % color))) |
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2034 |
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2035 |
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2036 def test_decode_rf(self): |
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2037 rf = UploadInstance(_REMOTE, 'KarstenHilbertRF.dcm')['ID'] |
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2038 truth = Image.open(GetDatabasePath('Formats/KarstenHilbertRF.png')) |
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2039 |
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2040 self.AssertSameImages(truth.getdata(), '/instances/%s/image-uint8' % rf) |
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2041 self.AssertSameImages(truth.getdata(), '/instances/%s/image-uint16' % rf) |
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2042 self.AssertSameImages(truth.getdata(), '/instances/%s/image-int16' % rf) |
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2043 self.AssertSameImages(truth.getdata(), '/instances/%s/preview' % rf) |
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2044 |
|
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2045 self.assertEqual('42254d70efd2f4a1b8f3455909689f0e', ComputeMD5(DoGet(_REMOTE, '/instances/%s/matlab' % rf))) |
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2046 |
|
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2047 |
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2048 def test_decode_multiframe(self): |
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2049 mf = UploadInstance(_REMOTE, 'Multiframe.dcm')['ID'] |
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2050 |
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2051 # Test the first frame |
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2052 truth = Image.open(GetDatabasePath('Formats/Multiframe0.png')) |
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2053 self.AssertSameImages(truth.getdata(), '/instances/%s/image-uint8' % mf) |
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2054 self.AssertSameImages(truth.getdata(), '/instances/%s/image-uint16' % mf) |
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2055 self.AssertSameImages(truth.getdata(), '/instances/%s/image-int16' % mf) |
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2056 self.AssertSameImages(truth.getdata(), '/instances/%s/preview' % mf) |
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2057 self.assertEqual('9812b99d93bbcd4e7684ded089b5dfb3', ComputeMD5(DoGet(_REMOTE, '/instances/%s/matlab' % mf))) |
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2058 |
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2059 self.AssertSameImages(truth.getdata(), '/instances/%s/frames/0/image-uint16' % mf) |
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2060 |
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2061 # Test the last frame |
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2062 truth = Image.open(GetDatabasePath('Formats/Multiframe75.png')) |
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|
2063 self.AssertSameImages(truth.getdata(), '/instances/%s/frames/75/image-uint16' % mf) |
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2064 |
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2065 |
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2066 def test_decode_signed(self): |
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2067 signed = UploadInstance(_REMOTE, 'SignedCT.dcm')['ID'] |
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2068 minValue = -2000 |
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2069 maxValue = 4042 |
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2070 |
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2071 truth = Image.open(GetDatabasePath('Formats/SignedCT.png')) |
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2072 self.AssertSameImages(truth.getdata(), '/instances/%s/image-int16' % signed) |
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2073 |
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2074 truth2 = map(lambda x: 0 if x >= 32768 else x, truth.getdata()) |
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2075 self.AssertSameImages(truth2, '/instances/%s/image-uint16' % signed) |
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2076 |
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2077 truth3 = map(lambda x: 255 if x >= 256 else x, truth2) |
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2078 self.AssertSameImages(truth3, '/instances/%s/image-uint8' % signed) |
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2079 |
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2080 tmp = map(lambda x: x - 65536 if x >= 32768 else x, truth.getdata()) |
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2081 tmp = map(lambda x: (255.0 * (x - minValue)) / (maxValue - minValue), tmp) |
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2082 self.AssertSameImages(tmp, '/instances/%s/preview' % signed) |
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2083 |
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2084 self.assertEqual('b57e6c872a3da50877c7da689b03a444', ComputeMD5(DoGet(_REMOTE, '/instances/%s/matlab' % signed))) |
| 22 | 2085 |
| 2086 | |
|
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2087 def test_googlecode_issue_32(self): |
| 22 | 2088 f = UploadInstance(_REMOTE, 'Issue32.dcm')['ID'] |
| 2089 tags = DoGet(_REMOTE, '/instances/%s/tags?simplify' % f) | |
| 2090 self.assertEqual(u'Рентгенография', tags['SeriesDescription']) | |
| 2091 self.assertEqual(u'Таз', tags['BodyPartExamined']) | |
| 2092 self.assertEqual(u'Прямая', tags['ViewPosition']) | |
| 2093 | |
| 2094 | |
| 2095 def test_encodings(self): | |
| 23 | 2096 # Latin-1 (ISO_IR 100) |
| 22 | 2097 brainix = UploadInstance(_REMOTE, 'Brainix/Epi/IM-0001-0001.dcm')['ID'] |
| 2098 tags = DoGet(_REMOTE, '/instances/%s/tags?simplify' % brainix) | |
| 2099 self.assertEqual(u'IRM cérébrale, neuro-crâne', tags['StudyDescription']) | |
| 23 | 2100 |
| 2101 # Latin-2 (ISO_IR 101) | |
| 2102 a = UploadInstance(_REMOTE, 'MarekLatin2.dcm')['ID'] | |
| 2103 i = DoGet(_REMOTE, '/instances/%s/simplified-tags' % a) | |
| 2104 # dcm2xml MarekLatin2.dcm | iconv -f latin2 -t utf-8 | xmllint --format - | |
| 2105 self.assertEqual('Imię i Nazwisko osoby opisującej', | |
| 2106 i['ContentSequence'][4]['ConceptNameCodeSequence'][0]['CodeMeaning'].encode('utf-8')) | |
| 2107 | |
|
26
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2108 |
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2109 def test_storescu_custom_aet(self): |
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2110 # This tests a feature introduced in Orthanc 0.9.1: "Custom |
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2111 # setting of the local AET during C-Store SCU (both in Lua and |
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2112 # in the REST API)." |
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2113 # https://groups.google.com/forum/#!msg/orthanc-users/o5qMULformU/wZjW2iSaMcAJ |
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2114 |
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2115 self.assertEqual(0, len(DoGet(_LOCAL, '/patients'))) |
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2116 |
|
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2117 a = UploadInstance(_REMOTE, 'Knee/T1/IM-0001-0001.dcm') |
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2118 b = UploadInstance(_REMOTE, 'Knee/T1/IM-0001-0002.dcm') |
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2119 c = UploadInstance(_REMOTE, 'Knee/T1/IM-0001-0003.dcm') |
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2120 |
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2121 j = DoPost(_REMOTE, '/modalities/orthanctest/store', { |
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2122 'LocalAet' : 'YOP', |
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2123 'Resources' : [ a['ID'], b['ID'] ] |
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2124 }) |
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2125 |
|
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2126 self.assertEqual(2, len(DoGet(_LOCAL, '/instances'))) |
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2127 self.assertEqual('YOP', DoGet(_LOCAL, '/instances/%s/metadata/RemoteAET' % a['ID'])) |
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2128 |
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|
2129 DropOrthanc(_LOCAL) |
|
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|
2130 self.assertEqual(0, len(DoGet(_LOCAL, '/instances'))) |
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|
2131 |
|
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|
2132 j = DoPost(_REMOTE, '/modalities/orthanctest/store', { |
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|
2133 'Resources' : [ c['ID'] ] |
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|
2134 }) |
|
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|
2135 |
|
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|
2136 self.assertEqual(1, len(DoGet(_LOCAL, '/instances'))) |
|
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|
2137 self.assertEqual('ORTHANC', DoGet(_LOCAL, '/instances/%s/metadata/RemoteAET' % c['ID'])) |
|
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|
2138 |
|
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diff
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|
2139 DropOrthanc(_REMOTE) |
|
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test_storescu_custom_aet
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diff
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|
2140 DropOrthanc(_LOCAL) |
|
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|
2141 |
|
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|
2142 InstallLuaScript('Lua/AutoroutingChangeAet.lua') |
|
040f6ef1394a
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diff
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|
2143 DoPost(_REMOTE, '/tools/execute-script', 'aet = "HELLO"', 'application/lua') |
|
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|
2144 |
|
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|
2145 self.assertEqual(0, len(DoGet(_LOCAL, '/instances'))) |
|
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|
2146 UploadInstance(_REMOTE, 'Knee/T1/IM-0001-0001.dcm') |
|
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|
2147 WaitEmpty(_REMOTE) |
|
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|
2148 self.assertEqual(1, len(DoGet(_LOCAL, '/instances'))) |
|
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|
2149 self.assertEqual('HELLO', DoGet(_LOCAL, '/instances/%s/metadata/RemoteAET' % a['ID'])) |
|
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|
2150 |
|
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|
2151 DoPost(_REMOTE, '/tools/execute-script', 'aet = nill', 'application/lua') |
|
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|
2152 UploadInstance(_REMOTE, 'Knee/T1/IM-0001-0002.dcm') |
|
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|
2153 WaitEmpty(_REMOTE) |
|
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|
2154 self.assertEqual(2, len(DoGet(_LOCAL, '/instances'))) |
|
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|
2155 self.assertEqual('ORTHANC', DoGet(_LOCAL, '/instances/%s/metadata/RemoteAET' % b['ID'])) |
|
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2156 |
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2157 def test_resources_since_limit(self): |
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2158 # Upload 16 instances |
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2159 for i in range(4): |
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2160 UploadInstance(_REMOTE, 'Brainix/Flair/IM-0001-000%d.dcm' % (i + 1)) |
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2161 UploadInstance(_REMOTE, 'Brainix/Epi/IM-0001-000%d.dcm' % (i + 1)) |
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2162 UploadInstance(_REMOTE, 'Knee/T1/IM-0001-000%d.dcm' % (i + 1)) |
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2163 UploadInstance(_REMOTE, 'Knee/T2/IM-0001-000%d.dcm' % (i + 1)) |
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2164 |
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2165 self.assertEqual(2, len(DoGet(_REMOTE, '/patients'))) |
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2166 self.assertEqual(2, len(DoGet(_REMOTE, '/studies'))) |
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2167 self.assertEqual(4, len(DoGet(_REMOTE, '/series'))) |
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2168 self.assertEqual(16, len(DoGet(_REMOTE, '/instances'))) |
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2169 |
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2170 self.assertRaises(Exception, lambda: DoGet(_REMOTE, '/patients&since=10' % i)) |
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2171 self.assertRaises(Exception, lambda: DoGet(_REMOTE, '/patients&limit=10' % i)) |
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2172 |
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2173 self.assertEqual(0, len(DoGet(_REMOTE, '/patients?since=0&limit=0'))) |
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2174 self.assertEqual(2, len(DoGet(_REMOTE, '/patients?since=0&limit=100'))) |
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2175 self.assertEqual(2, len(DoGet(_REMOTE, '/studies?since=0&limit=100'))) |
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2176 self.assertEqual(4, len(DoGet(_REMOTE, '/series?since=0&limit=100'))) |
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2177 self.assertEqual(16, len(DoGet(_REMOTE, '/instances?since=0&limit=100'))) |
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2178 self.assertEqual(1, len(DoGet(_REMOTE, '/patients?since=1&limit=100'))) |
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2179 self.assertEqual(0, len(DoGet(_REMOTE, '/patients?since=2&limit=100'))) |
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2180 self.assertEqual(0, len(DoGet(_REMOTE, '/patients?since=3&limit=100'))) |
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2181 self.assertEqual(1, len(DoGet(_REMOTE, '/studies?since=1&limit=100'))) |
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2182 self.assertEqual(3, len(DoGet(_REMOTE, '/series?since=1&limit=100'))) |
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2183 self.assertEqual(2, len(DoGet(_REMOTE, '/series?since=2&limit=100'))) |
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2184 self.assertEqual(1, len(DoGet(_REMOTE, '/series?since=3&limit=100'))) |
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2185 self.assertEqual(0, len(DoGet(_REMOTE, '/series?since=4&limit=100'))) |
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2186 self.assertEqual(0, len(DoGet(_REMOTE, '/series?since=100&limit=100'))) |
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2187 self.assertEqual(15, len(DoGet(_REMOTE, '/instances?since=1&limit=100'))) |
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2188 |
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2189 for limit in [ 1, 2, 3, 7, 16, 17 ]: |
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2190 s = {} |
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2191 since = 0 |
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|
2192 while True: |
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2193 t = DoGet(_REMOTE, '/instances?since=%d&limit=%d' % (since, limit)) |
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2194 if len(t) == 0: |
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2195 break |
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2196 |
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|
2197 since += len(t) |
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2198 for i in t: |
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2199 s[i] = None |
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2200 |
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2201 self.assertEqual(16, len(s)) |
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|
2202 for instance in DoGet(_REMOTE, '/instances'): |
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2203 self.assertTrue(instance in s) |
| 36 | 2204 |
| 2205 | |
| 2206 def test_create_pdf(self): | |
| 2207 # Upload 4 instances | |
| 2208 brainixInstance = UploadInstance(_REMOTE, 'Brainix/Flair/IM-0001-0001.dcm')['ID'] | |
| 2209 UploadInstance(_REMOTE, 'Brainix/Epi/IM-0001-0001.dcm') | |
| 2210 UploadInstance(_REMOTE, 'Knee/T1/IM-0001-0001.dcm') | |
| 2211 UploadInstance(_REMOTE, 'Knee/T2/IM-0001-0001.dcm') | |
| 2212 | |
| 2213 brainixPatient = '16738bc3-e47ed42a-43ce044c-a3414a45-cb069bd0' | |
| 2214 brainixStudy = '27f7126f-4f66fb14-03f4081b-f9341db2-53925988' | |
| 2215 brainixEpi = '2ac1316d-3e432022-62eabff2-c59f5475-9b1ac3f8' | |
| 2216 | |
| 2217 with open(GetDatabasePath('HelloWorld.pdf'), 'rb') as f: | |
| 2218 pdf = f.read() | |
| 2219 | |
| 2220 i = DoPost(_REMOTE, '/tools/create-dicom', | |
| 2221 json.dumps({ | |
| 2222 'Tags' : { | |
| 2223 'PatientName' : 'Jodogne', | |
| 2224 'Modality' : 'CT', | |
| 2225 }, | |
| 2226 'Content' : 'data:application/pdf;base64,' + base64.b64encode(pdf) | |
| 2227 })) | |
| 2228 | |
| 2229 self.assertEqual('Jodogne', DoGet(_REMOTE, '/instances/%s/content/PatientName' % i['ID']).strip()) | |
| 2230 self.assertEqual('OT', DoGet(_REMOTE, '/instances/%s/content/Modality' % i['ID']).strip()) | |
| 2231 | |
| 2232 b = DoGet(_REMOTE, '/instances/%s/content/0042-0011' % i['ID']) | |
| 2233 self.assertEqual(len(b), len(pdf) + 1) | |
| 2234 self.assertEqual(ComputeMD5(b), ComputeMD5(pdf + '\0')) | |
| 2235 | |
| 2236 self.assertRaises(Exception, lambda: DoPost(_REMOTE, '/tools/create-dicom', | |
| 2237 json.dumps({ | |
| 2238 'Parent' : brainixPatient, | |
| 2239 'Tags' : { | |
| 2240 'PatientName' : 'Jodogne', | |
| 2241 } | |
| 2242 }))) | |
| 2243 | |
| 2244 i = DoPost(_REMOTE, '/tools/create-dicom', | |
| 2245 json.dumps({ | |
| 2246 'Parent' : brainixPatient, | |
| 2247 'Tags' : { 'StudyDescription' : 'PDF^Patient' }, | |
| 2248 'Content' : 'data:application/pdf;base64,' + base64.b64encode(pdf) | |
| 2249 })) | |
| 2250 | |
| 2251 self.assertEqual(brainixPatient, DoGet(_REMOTE, '/instances/%s/patient' % i['ID'])['ID']) | |
| 2252 | |
| 2253 i = DoPost(_REMOTE, '/tools/create-dicom', | |
| 2254 json.dumps({ | |
| 2255 'Parent' : brainixStudy, | |
| 2256 'Tags' : { 'SeriesDescription' : 'PDF^Study' }, | |
| 2257 'Content' : 'data:application/pdf;base64,' + base64.b64encode(pdf) | |
| 2258 })) | |
| 2259 | |
| 2260 self.assertEqual(brainixStudy, DoGet(_REMOTE, '/instances/%s/study' % i['ID'])['ID']) | |
| 2261 | |
| 2262 i = DoPost(_REMOTE, '/tools/create-dicom', | |
| 2263 json.dumps({ | |
| 2264 'Parent' : brainixEpi, | |
| 37 | 2265 'Tags' : { 'SpecificCharacterSet' : 'ISO_IR 13' }, |
| 36 | 2266 'Content' : 'data:application/pdf;base64,' + base64.b64encode(pdf) |
| 2267 })) | |
| 2268 | |
| 2269 self.assertEqual(brainixEpi, DoGet(_REMOTE, '/instances/%s/series' % i['ID'])['ID']) | |
| 2270 | |
| 2271 b = DoGet(_REMOTE, '/instances/%s/pdf' % i['ID']) | |
| 2272 self.assertEqual(len(b), len(pdf)) | |
| 2273 self.assertEqual(ComputeMD5(b), ComputeMD5(pdf)) | |
| 2274 | |
| 2275 self.assertRaises(Exception, lambda: DoGet(_REMOTE, '/instances/%s/pdf' % brainixInstance)) | |
| 38 | 2276 |
| 2277 | |
| 2278 def test_create_series(self): | |
| 2279 i = DoPost(_REMOTE, '/tools/create-dicom', | |
| 2280 json.dumps({ | |
| 2281 'Tags' : { | |
| 40 | 2282 'SpecificCharacterSet' : 'ISO_IR 100', |
| 2283 'PatientName' : 'Sébastien Jodogne', | |
| 38 | 2284 'Modality' : 'CT', |
| 2285 }, | |
| 2286 'Content' : [ | |
| 40 | 2287 { |
| 2288 'Content': 'data:image/png;base64,iVBORw0KGgoAAAANSUhEUgAAAAUAAAAFCAYAAACNbyblAAAAHElEQVQI12P4//8/w38GIAXDIBKE0DHxgljNBAAO9TXL0Y4OHwAAAABJRU5ErkJggg==', # red dot in RGBA | |
| 2289 'Tags' : { 'ImageComments' : 'Tutu' } | |
| 2290 }, | |
| 38 | 2291 'data:image/png;base64,iVBORw0KGgoAAAANSUhEUgAAABAAAAAQCAYAAAAf8/9hAAAAoUlEQVQ4jZ2SWw3EIBREjwUsYAELa2EtoAULFUCyXAtroRZqoRbox254BdLC/DZnZjoXWJFgCDg8egW2CBEhEnDzyRk+Ecxz2KP/0AL8S99T+jQccAVs22qKwAuPuq0uyNg9cPLh3am+pe/dkHLZtqJHj6vXJrZ7nvzvxxgemXgUwnGfXqpee09mUwp8m022OYP6bLF7mVuVe0y/umxinsAXRd9z0k1ubWsAAAAASUVORK5CYII=', |
| 2292 ] | |
| 2293 })) | |
| 2294 | |
| 2295 s = DoGet(_REMOTE, i['Path']) | |
| 2296 self.assertEqual('Series', s['Type']) | |
| 2297 self.assertEqual(s['ID'], i['ID']) | |
| 2298 self.assertEqual(2, len(s['Instances'])) | |
| 39 | 2299 self.assertEqual(2, s['ExpectedNumberOfInstances']) |
| 2300 self.assertEqual('Complete', s['Status']) | |
| 40 | 2301 |
| 2302 a = DoGet(_REMOTE, '/instances/%s/tags?simplify' % s['Instances'][0]) | |
| 2303 b = DoGet(_REMOTE, '/instances/%s/tags?simplify' % s['Instances'][1]) | |
| 2304 self.assertTrue('ImageComments' in a or 'ImageComments' in b) | |
| 2305 if 'ImageComments' in a: | |
| 2306 self.assertEqual('Tutu', a['ImageComments']) | |
| 2307 else: | |
| 2308 self.assertEqual('Tutu', b['ImageComments']) | |
| 2309 | |
| 2310 patient = DoGet(_REMOTE, '/instances/%s/patient' % s['Instances'][0]) | |
| 2311 self.assertEqual(patient['MainDicomTags']['PatientName'].encode('utf-8'), | |
| 2312 'Sébastien Jodogne') | |
| 47 | 2313 |
| 2314 | |
| 2315 def test_create_binary(self): | |
| 2316 binary = ''.join(map(chr, range(256))) | |
| 2317 encoded = 'data:application/octet-stream;base64,' + base64.b64encode(binary) | |
| 2318 tags = { | |
| 2319 'PatientName' : 'Jodogne', | |
| 2320 '8899-8899' : encoded | |
| 2321 } | |
| 2322 | |
| 2323 i = DoPost(_REMOTE, '/tools/create-dicom', | |
| 2324 json.dumps({ | |
| 2325 'Tags' : tags | |
| 2326 })) | |
| 2327 | |
| 2328 self.assertEqual('Jodogne', DoGet(_REMOTE, '/instances/%s/content/PatientName' % i['ID']).strip()) | |
| 2329 self.assertEqual(binary, DoGet(_REMOTE, '/instances/%s/content/8899-8899' % i['ID']).strip()) | |
| 2330 | |
| 2331 i = DoPost(_REMOTE, '/tools/create-dicom', | |
| 2332 json.dumps({ | |
| 2333 'InterpretBinaryTags' : False, | |
| 2334 'Tags' : tags | |
| 2335 })) | |
| 2336 | |
| 2337 self.assertEqual('Jodogne', DoGet(_REMOTE, '/instances/%s/content/PatientName' % i['ID']).strip()) | |
| 2338 self.assertEqual(encoded, DoGet(_REMOTE, '/instances/%s/content/8899-8899' % i['ID'])[0:-1]) | |
|
48
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2339 |
|
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2340 |
|
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2341 def test_patient_ids_collision(self): |
|
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2342 # Upload 3 instances from 3 different studies, but with the |
|
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2343 # same PatientID |
|
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2344 for i in range(3): |
|
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2345 UploadInstance(_REMOTE, 'PatientIdsCollision/Image%d.dcm' % (i + 1)) |
|
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2346 |
|
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2347 a = DoPost(_REMOTE, '/tools/find', { 'Level' : 'Patient', |
|
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2348 'Query' : { 'PatientName' : '*' }}) |
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2349 self.assertEqual(1, len(a)) |
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2350 self.assertEqual('COMMON', DoGet(_REMOTE, '/patients/%s' % a[0]) ['MainDicomTags']['PatientID']) |
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2351 |
|
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2352 a = DoPost(_REMOTE, '/tools/find', { 'Level' : 'Study', |
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2353 'CaseSensitive' : True, |
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2354 'Query' : { 'PatientName' : 'FOO\\HELLO' }}) |
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2355 self.assertEqual(2, len(a)) |
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2356 |
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2357 a = DoPost(_REMOTE, '/tools/find', { 'Level' : 'Series', |
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2358 'CaseSensitive' : False, |
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2359 'Query' : { 'PatientName' : 'Foo' }}) |
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2360 self.assertEqual(1, len(a)) |
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2361 self.assertEqual('FOO^SERIES', DoGet(_REMOTE, '/series/%s/study' % a[0]) ['MainDicomTags']['StudyDescription']) |
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2362 self.assertEqual('FOO', DoGet(_REMOTE, '/series/%s/study' % a[0]) ['PatientMainDicomTags']['PatientName']) |
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2363 self.assertEqual('COMMON', DoGet(_REMOTE, '/series/%s/study' % a[0]) ['PatientMainDicomTags']['PatientID']) |
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2364 |
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2365 a = DoPost(_REMOTE, '/tools/find', { 'Level' : 'Study', |
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2366 'Query' : { 'PatientName' : '*' }}) |
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2367 self.assertEqual(3, len(a)) |
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2368 d = map(lambda x: DoGet(_REMOTE, '/studies/%s' % x) ['MainDicomTags']['StudyDescription'], a) |
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2369 self.assertTrue('FOO^SERIES' in d) |
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2370 self.assertTrue('HELLO^SERIES' in d) |
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2371 self.assertTrue('WORLD^SERIES' in d) |
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2372 |
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2373 d = map(lambda x: DoGet(_REMOTE, '/studies/%s' % x) ['PatientMainDicomTags']['PatientID'], a) |
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2374 self.assertEqual(1, len(set(d))) |
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2375 self.assertEqual('COMMON', d[0]) |
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2376 |
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2377 for i in a: |
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2378 d = DoGet(_REMOTE, '/studies/%s' % i) ['MainDicomTags']['StudyDescription'] |
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e4352463ff74
test_patient_ids_collision
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
47
diff
changeset
|
2379 p = DoGet(_REMOTE, '/studies/%s' % i) ['PatientMainDicomTags']['PatientName'] |
|
e4352463ff74
test_patient_ids_collision
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
47
diff
changeset
|
2380 self.assertEqual('%s^SERIES' % p, d) |
|
49
e7f9b8199545
test_bitbucket_issue_4
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
48
diff
changeset
|
2381 |
|
e7f9b8199545
test_bitbucket_issue_4
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
48
diff
changeset
|
2382 |
|
e7f9b8199545
test_bitbucket_issue_4
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
48
diff
changeset
|
2383 def test_bitbucket_issue_4(self): |
|
e7f9b8199545
test_bitbucket_issue_4
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
48
diff
changeset
|
2384 UploadInstance(_REMOTE, 'Brainix/Epi/IM-0001-0001.dcm') |
|
e7f9b8199545
test_bitbucket_issue_4
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
48
diff
changeset
|
2385 UploadInstance(_REMOTE, 'Brainix/Epi/IM-0001-0002.dcm') |
|
e7f9b8199545
test_bitbucket_issue_4
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
48
diff
changeset
|
2386 UploadInstance(_REMOTE, 'Brainix/Epi/IM-0001-0003.dcm') |
|
e7f9b8199545
test_bitbucket_issue_4
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
48
diff
changeset
|
2387 UploadInstance(_REMOTE, 'Formats/Jpeg.dcm') |
|
e7f9b8199545
test_bitbucket_issue_4
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
48
diff
changeset
|
2388 UploadInstance(_REMOTE, 'Formats/JpegLossless.dcm') |
|
e7f9b8199545
test_bitbucket_issue_4
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
48
diff
changeset
|
2389 UploadInstance(_REMOTE, 'Formats/Rle.dcm') |
|
e7f9b8199545
test_bitbucket_issue_4
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
48
diff
changeset
|
2390 |
|
e7f9b8199545
test_bitbucket_issue_4
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
48
diff
changeset
|
2391 self.assertEqual(0, len(DoGet(_LOCAL, '/instances'))) |
|
e7f9b8199545
test_bitbucket_issue_4
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
48
diff
changeset
|
2392 self.assertEqual(6, len(DoGet(_REMOTE, '/instances'))) |
|
e7f9b8199545
test_bitbucket_issue_4
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
48
diff
changeset
|
2393 |
|
e7f9b8199545
test_bitbucket_issue_4
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
48
diff
changeset
|
2394 p = DoGet(_REMOTE, '/patients') |
|
e7f9b8199545
test_bitbucket_issue_4
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
48
diff
changeset
|
2395 self.assertEqual(2, len(p)) |
|
e7f9b8199545
test_bitbucket_issue_4
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
48
diff
changeset
|
2396 i1 = map(lambda x: x['ID'], DoGet(_REMOTE, '/patients/%s/instances' % p[0])) |
|
e7f9b8199545
test_bitbucket_issue_4
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
48
diff
changeset
|
2397 i2 = map(lambda x: x['ID'], DoGet(_REMOTE, '/patients/%s/instances' % p[1])) |
|
e7f9b8199545
test_bitbucket_issue_4
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
48
diff
changeset
|
2398 self.assertEqual(3, len(i1)) |
|
e7f9b8199545
test_bitbucket_issue_4
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
48
diff
changeset
|
2399 self.assertEqual(3, len(i2)) |
|
e7f9b8199545
test_bitbucket_issue_4
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
48
diff
changeset
|
2400 |
|
e7f9b8199545
test_bitbucket_issue_4
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
48
diff
changeset
|
2401 j = DoPost(_REMOTE, '/modalities/orthanctest/store', i2[0:1] + i1 + i2[1:3]) |
|
e7f9b8199545
test_bitbucket_issue_4
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
48
diff
changeset
|
2402 |
|
e7f9b8199545
test_bitbucket_issue_4
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
48
diff
changeset
|
2403 self.assertEqual(6, len(DoGet(_LOCAL, '/instances'))) |
|
50
8de63d56cf11
test_create_sequence
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
49
diff
changeset
|
2404 |
|
8de63d56cf11
test_create_sequence
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
49
diff
changeset
|
2405 |
|
8de63d56cf11
test_create_sequence
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
49
diff
changeset
|
2406 def test_create_sequence(self): |
|
8de63d56cf11
test_create_sequence
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
49
diff
changeset
|
2407 i = DoPost(_REMOTE, '/tools/create-dicom', |
|
8de63d56cf11
test_create_sequence
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
49
diff
changeset
|
2408 json.dumps({ |
|
8de63d56cf11
test_create_sequence
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
49
diff
changeset
|
2409 'Tags' : { |
|
8de63d56cf11
test_create_sequence
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
49
diff
changeset
|
2410 'SpecificCharacterSet': 'ISO_IR 100', # Encode using Latin1 |
|
8de63d56cf11
test_create_sequence
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
49
diff
changeset
|
2411 'PatientName': 'Jodogne^', |
|
51
264a20a0276d
test_modify_sequence
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
50
diff
changeset
|
2412 'ReferencedStudySequence': GenerateTestSequence(), |
|
50
8de63d56cf11
test_create_sequence
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
49
diff
changeset
|
2413 } |
|
8de63d56cf11
test_create_sequence
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
49
diff
changeset
|
2414 }))['ID'] |
|
8de63d56cf11
test_create_sequence
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
49
diff
changeset
|
2415 |
|
8de63d56cf11
test_create_sequence
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
49
diff
changeset
|
2416 self.assertEqual('Jodogne^', DoGet(_REMOTE, '/instances/%s/content/PatientName' % i)) |
|
8de63d56cf11
test_create_sequence
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
49
diff
changeset
|
2417 self.assertEqual('Hello^', DoGet(_REMOTE, '/instances/%s/content/ReferencedStudySequence/0/StudyDescription' % i)) |
|
8de63d56cf11
test_create_sequence
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
49
diff
changeset
|
2418 self.assertEqual('Toto', DoGet(_REMOTE, '/instances/%s/content/ReferencedStudySequence/0/ReferencedStudySequence/0/StudyDescription' % i)) |
|
8de63d56cf11
test_create_sequence
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
49
diff
changeset
|
2419 self.assertEqual('Tata', DoGet(_REMOTE, '/instances/%s/content/ReferencedStudySequence/0/ReferencedStudySequence/1/StudyDescription' % i)) |
|
8de63d56cf11
test_create_sequence
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
49
diff
changeset
|
2420 self.assertEqual(u'Sébastien^'.encode('latin-1'), |
|
8de63d56cf11
test_create_sequence
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
49
diff
changeset
|
2421 DoGet(_REMOTE, '/instances/%s/content/ReferencedStudySequence/1/StudyDescription' % i)) |
|
51
264a20a0276d
test_modify_sequence
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
50
diff
changeset
|
2422 |
|
264a20a0276d
test_modify_sequence
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
50
diff
changeset
|
2423 |
|
264a20a0276d
test_modify_sequence
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
50
diff
changeset
|
2424 def test_modify_sequence(self): |
|
264a20a0276d
test_modify_sequence
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
50
diff
changeset
|
2425 i = UploadInstance(_REMOTE, 'PrivateTags.dcm')['ID'] |
|
264a20a0276d
test_modify_sequence
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
50
diff
changeset
|
2426 self.assertRaises(Exception, lambda: DoGet(_REMOTE, '/instances/%s/content/ReferencedStudySequence' % i)) |
|
264a20a0276d
test_modify_sequence
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
50
diff
changeset
|
2427 |
|
264a20a0276d
test_modify_sequence
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
50
diff
changeset
|
2428 j = DoPost(_REMOTE, '/instances/%s/modify' % i, |
|
264a20a0276d
test_modify_sequence
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
50
diff
changeset
|
2429 json.dumps({ |
|
264a20a0276d
test_modify_sequence
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
50
diff
changeset
|
2430 "Replace" : { |
|
264a20a0276d
test_modify_sequence
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
50
diff
changeset
|
2431 "PatientName" : "hello", |
|
264a20a0276d
test_modify_sequence
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
50
diff
changeset
|
2432 'ReferencedStudySequence': GenerateTestSequence(), |
|
264a20a0276d
test_modify_sequence
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
50
diff
changeset
|
2433 }, |
|
264a20a0276d
test_modify_sequence
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
50
diff
changeset
|
2434 }), |
|
264a20a0276d
test_modify_sequence
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
50
diff
changeset
|
2435 'application/json') |
|
264a20a0276d
test_modify_sequence
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
50
diff
changeset
|
2436 j = DoPost(_REMOTE, '/instances', j, 'application/dicom')['ID'] |
|
264a20a0276d
test_modify_sequence
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
50
diff
changeset
|
2437 DoDelete(_REMOTE, '/instances/%s' % i) |
|
264a20a0276d
test_modify_sequence
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
50
diff
changeset
|
2438 |
| 52 | 2439 self.assertEqual(2, len(DoGet(_REMOTE, '/instances/%s/content/ReferencedStudySequence' % j))) |
| 2440 | |
| 2441 | |
| 2442 def test_compression(self): | |
| 2443 i = UploadInstance(_REMOTE, 'DummyCT.dcm')['ID'] | |
| 2444 | |
| 2445 data = DoGetRaw(_REMOTE, '/instances/%s/attachments/dicom-as-json/data' % i)[1] | |
| 2446 | |
| 2447 # "StorageCompression" is enabled in the Orthanc to be tested, | |
| 2448 # uncompress the data before running the test | |
| 2449 if DoGet(_REMOTE, '/instances/%s/attachments/dicom-as-json/is-compressed' % i) != 0: | |
| 2450 DoPost(_REMOTE, '/instances/%s/attachments/dicom-as-json/uncompress' % i) | |
| 2451 | |
| 2452 cs = DoGet(_REMOTE, '/statistics')['TotalDiskSize'] | |
| 2453 us = DoGet(_REMOTE, '/statistics')['TotalUncompressedSize'] | |
| 2454 size = DoGet(_REMOTE, '/instances/%s/attachments/dicom-as-json/size' % i) | |
| 2455 md5 = DoGet(_REMOTE, '/instances/%s/attachments/dicom-as-json/md5' % i) | |
| 2456 self.assertEqual(data, DoGetRaw(_REMOTE, '/instances/%s/attachments/dicom-as-json/compressed-data' % i)[1]) | |
| 2457 self.assertEqual(md5, DoGet(_REMOTE, '/instances/%s/attachments/dicom-as-json/compressed-md5' % i)) | |
| 2458 self.assertEqual(size, DoGet(_REMOTE, '/instances/%s/attachments/dicom-as-json/compressed-size' % i)) | |
| 2459 | |
| 2460 ops = DoGet(_REMOTE, '/instances/%s/attachments/dicom-as-json' % i) | |
| 2461 self.assertTrue('compress' in ops) | |
| 2462 self.assertTrue('uncompress' in ops) | |
| 2463 self.assertTrue('is-compressed' in ops) | |
| 2464 self.assertEqual(0, DoGet(_REMOTE, '/instances/%s/attachments/dicom-as-json/is-compressed' % i)) | |
| 2465 DoPost(_REMOTE, '/instances/%s/attachments/dicom-as-json/verify-md5' % i) | |
| 2466 | |
| 2467 DoPost(_REMOTE, '/instances/%s/attachments/dicom-as-json/compress' % i) | |
| 2468 DoPost(_REMOTE, '/instances/%s/attachments/dicom-as-json/verify-md5' % i) | |
| 2469 self.assertEqual(1, DoGet(_REMOTE, '/instances/%s/attachments/dicom-as-json/is-compressed' % i)) | |
| 2470 self.assertLess(cs, DoGet(_REMOTE, '/statistics')['TotalDiskSize']) | |
| 2471 self.assertEqual(us, DoGet(_REMOTE, '/statistics')['TotalUncompressedSize']) | |
| 2472 self.assertGreater(len(data), len(DoGetRaw(_REMOTE, '/instances/%s/attachments/dicom-as-json/compressed-data' % i)[1])) | |
| 2473 self.assertGreater(size, DoGet(_REMOTE, '/instances/%s/attachments/dicom-as-json/compressed-size' % i)) | |
| 2474 self.assertEqual(size, DoGet(_REMOTE, '/instances/%s/attachments/dicom-as-json/size' % i)) | |
| 2475 self.assertEqual(md5, DoGet(_REMOTE, '/instances/%s/attachments/dicom-as-json/md5' % i)) | |
| 2476 self.assertNotEqual(md5, DoGet(_REMOTE, '/instances/%s/attachments/dicom-as-json/compressed-md5' % i)) | |
| 2477 | |
| 2478 DoPost(_REMOTE, '/instances/%s/attachments/dicom-as-json/uncompress' % i) | |
| 2479 DoPost(_REMOTE, '/instances/%s/attachments/dicom-as-json/verify-md5' % i) | |
| 2480 self.assertEqual(0, DoGet(_REMOTE, '/instances/%s/attachments/dicom-as-json/is-compressed' % i)) | |
| 2481 self.assertEqual(data, DoGetRaw(_REMOTE, '/instances/%s/attachments/dicom-as-json/compressed-data' % i)[1]) | |
| 2482 self.assertEqual(size, DoGet(_REMOTE, '/instances/%s/attachments/dicom-as-json/compressed-size' % i)) | |
| 2483 self.assertEqual(size, DoGet(_REMOTE, '/instances/%s/attachments/dicom-as-json/size' % i)) | |
| 2484 self.assertEqual(md5, DoGet(_REMOTE, '/instances/%s/attachments/dicom-as-json/md5' % i)) | |
| 2485 self.assertEqual(md5, DoGet(_REMOTE, '/instances/%s/attachments/dicom-as-json/compressed-md5' % i)) | |
| 2486 self.assertEqual(cs, DoGet(_REMOTE, '/statistics')['TotalDiskSize']) | |
| 2487 self.assertEqual(us, DoGet(_REMOTE, '/statistics')['TotalUncompressedSize']) | |
| 53 | 2488 |
| 2489 | |
| 2490 def test_ordered_slices(self): | |
| 2491 i = UploadInstance(_REMOTE, 'Multiframe.dcm')['ID'] | |
| 2492 s = DoGet(_REMOTE, '/instances/%s' % i)['ParentSeries'] | |
| 2493 o = DoGet(_REMOTE, '/series/%s/ordered-slices' % s) | |
| 2494 self.assertEqual('Sequence', o['Type']) | |
| 2495 self.assertEqual(1, len(o['Dicom'])) | |
| 2496 self.assertEqual('/instances/9e05eb0a-18b6268c-e0d36085-8ddab517-3b5aec02/file', o['Dicom'][0]) | |
| 2497 self.assertEqual(76, len(o['Slices'])) | |
| 2498 for j in range(76): | |
| 2499 self.assertEqual('/instances/9e05eb0a-18b6268c-e0d36085-8ddab517-3b5aec02/frames/%d' % j, o['Slices'][j]) | |
| 2500 | |
| 68 | 2501 self.assertEqual(1, len(o['SlicesShort'])) |
| 2502 self.assertEqual('9e05eb0a-18b6268c-e0d36085-8ddab517-3b5aec02', o['SlicesShort'][0][0]) | |
| 2503 self.assertEqual(0, o['SlicesShort'][0][1]) | |
| 2504 self.assertEqual(76, o['SlicesShort'][0][2]) | |
| 2505 | |
| 53 | 2506 i = UploadInstance(_REMOTE, 'Brainix/Epi/IM-0001-0001.dcm')['ID'] |
| 2507 j = UploadInstance(_REMOTE, 'Brainix/Epi/IM-0001-0002.dcm')['ID'] | |
| 2508 k = UploadInstance(_REMOTE, 'Brainix/Epi/IM-0001-0003.dcm')['ID'] | |
| 2509 s = DoGet(_REMOTE, '/instances/%s' % i)['ParentSeries'] | |
| 2510 o = DoGet(_REMOTE, '/series/%s/ordered-slices' % s) | |
| 2511 | |
| 2512 self.assertEqual('Volume', o['Type']) | |
| 2513 self.assertEqual(3, len(o['Dicom'])) | |
| 2514 self.assertEqual(3, len(o['Slices'])) | |
| 2515 self.assertEqual('/instances/%s/file' % i, o['Dicom'][2]) | |
| 2516 self.assertEqual('/instances/%s/file' % j, o['Dicom'][1]) | |
| 2517 self.assertEqual('/instances/%s/file' % k, o['Dicom'][0]) | |
| 2518 self.assertEqual('/instances/%s/frames/0' % i, o['Slices'][2]) | |
| 2519 self.assertEqual('/instances/%s/frames/0' % j, o['Slices'][1]) | |
| 2520 self.assertEqual('/instances/%s/frames/0' % k, o['Slices'][0]) | |
| 2521 | |
| 68 | 2522 self.assertEqual(3, len(o['SlicesShort'])) |
| 2523 self.assertEqual(k, o['SlicesShort'][0][0]) | |
| 2524 self.assertEqual(0, o['SlicesShort'][0][1]) | |
| 2525 self.assertEqual(1, o['SlicesShort'][0][2]) | |
| 2526 self.assertEqual(j, o['SlicesShort'][1][0]) | |
| 2527 self.assertEqual(0, o['SlicesShort'][1][1]) | |
| 2528 self.assertEqual(1, o['SlicesShort'][1][2]) | |
| 2529 self.assertEqual(i, o['SlicesShort'][2][0]) | |
| 2530 self.assertEqual(0, o['SlicesShort'][2][1]) | |
| 2531 self.assertEqual(1, o['SlicesShort'][2][2]) | |
| 2532 | |
| 53 | 2533 i = UploadInstance(_REMOTE, 'Beaufix/IM-0001-0001.dcm')['ID'] |
| 2534 j = UploadInstance(_REMOTE, 'Beaufix/IM-0001-0002.dcm')['ID'] | |
| 2535 s = DoGet(_REMOTE, '/instances/%s' % i)['ParentSeries'] | |
| 2536 o = DoGet(_REMOTE, '/series/%s/ordered-slices' % s) | |
| 2537 | |
| 2538 self.assertEqual('Sequence', o['Type']) | |
| 2539 self.assertEqual(2, len(o['Dicom'])) | |
| 2540 self.assertEqual(2, len(o['Slices'])) | |
| 2541 self.assertEqual('/instances/%s/file' % i, o['Dicom'][0]) | |
| 2542 self.assertEqual('/instances/%s/file' % j, o['Dicom'][1]) | |
| 2543 self.assertEqual('/instances/%s/frames/0' % i, o['Slices'][0]) | |
| 2544 self.assertEqual('/instances/%s/frames/0' % j, o['Slices'][1]) | |
|
54
c5f8a6b0d85e
test_incoming_movescu_accession
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
53
diff
changeset
|
2545 |
| 68 | 2546 self.assertEqual(2, len(o['SlicesShort'])) |
| 2547 self.assertEqual(i, o['SlicesShort'][0][0]) | |
| 2548 self.assertEqual(0, o['SlicesShort'][0][1]) | |
| 2549 self.assertEqual(1, o['SlicesShort'][0][2]) | |
| 2550 self.assertEqual(j, o['SlicesShort'][1][0]) | |
| 2551 self.assertEqual(0, o['SlicesShort'][1][1]) | |
| 2552 self.assertEqual(1, o['SlicesShort'][1][2]) | |
| 2553 | |
| 2554 | |
|
54
c5f8a6b0d85e
test_incoming_movescu_accession
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
53
diff
changeset
|
2555 |
|
c5f8a6b0d85e
test_incoming_movescu_accession
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
53
diff
changeset
|
2556 def test_incoming_movescu_accession(self): |
|
c5f8a6b0d85e
test_incoming_movescu_accession
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
53
diff
changeset
|
2557 UploadInstance(_REMOTE, 'Knee/T1/IM-0001-0001.dcm') |
|
c5f8a6b0d85e
test_incoming_movescu_accession
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
53
diff
changeset
|
2558 |
|
c5f8a6b0d85e
test_incoming_movescu_accession
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
53
diff
changeset
|
2559 self.assertEqual(0, len(DoGet(_LOCAL, '/patients'))) |
|
c5f8a6b0d85e
test_incoming_movescu_accession
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
53
diff
changeset
|
2560 CallMoveScu([ '--study', '-k', '0008,0052=STUDY', '-k', 'AccessionNumber=nope' ]) |
|
c5f8a6b0d85e
test_incoming_movescu_accession
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
53
diff
changeset
|
2561 self.assertEqual(0, len(DoGet(_LOCAL, '/patients'))) |
|
c5f8a6b0d85e
test_incoming_movescu_accession
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
53
diff
changeset
|
2562 CallMoveScu([ '--study', '-k', '0008,0052=PATIENT', '-k', 'AccessionNumber=A10003245599' ]) |
|
c5f8a6b0d85e
test_incoming_movescu_accession
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
53
diff
changeset
|
2563 self.assertEqual(0, len(DoGet(_LOCAL, '/patients'))) |
|
c5f8a6b0d85e
test_incoming_movescu_accession
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
53
diff
changeset
|
2564 CallMoveScu([ '--study', '-k', '0008,0052=STUDY', '-k', 'AccessionNumber=A10003245599' ]) |
|
c5f8a6b0d85e
test_incoming_movescu_accession
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
53
diff
changeset
|
2565 self.assertEqual(1, len(DoGet(_LOCAL, '/patients'))) |
|
c5f8a6b0d85e
test_incoming_movescu_accession
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
53
diff
changeset
|
2566 |
| 55 | 2567 |
| 2568 def test_dicom_to_json(self): | |
| 2569 i = UploadInstance(_REMOTE, 'PrivateMDNTags.dcm')['ID'] | |
|
60
cd3c7f70f139
test backward compatibility with Orthanc 0.9.4
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
59
diff
changeset
|
2570 j = UploadInstance(_REMOTE, 'PrivateTags.dcm')['ID'] |
|
cd3c7f70f139
test backward compatibility with Orthanc 0.9.4
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
59
diff
changeset
|
2571 |
|
cd3c7f70f139
test backward compatibility with Orthanc 0.9.4
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
59
diff
changeset
|
2572 t = DoGet(_REMOTE, '/instances/%s/tags?simplify' % i) |
|
cd3c7f70f139
test backward compatibility with Orthanc 0.9.4
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
59
diff
changeset
|
2573 with open(GetDatabasePath('PrivateMDNTagsSimplify.json'), 'r') as f: |
|
80
8466dbfcb22b
fix test against dcmtk 3.6.1
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
79
diff
changeset
|
2574 self.assertTrue(CompareTags(t, json.loads(f.read()), [ |
|
8466dbfcb22b
fix test against dcmtk 3.6.1
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
79
diff
changeset
|
2575 'ACR_NEMA_2C_VariablePixelDataGroupLength', |
|
8466dbfcb22b
fix test against dcmtk 3.6.1
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
79
diff
changeset
|
2576 'GenericGroupLength' |
|
8466dbfcb22b
fix test against dcmtk 3.6.1
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
79
diff
changeset
|
2577 ])) |
| 55 | 2578 |
| 2579 t = DoGet(_REMOTE, '/instances/%s/tags' % i) | |
| 2580 with open(GetDatabasePath('PrivateMDNTagsFull.json'), 'r') as f: | |
|
80
8466dbfcb22b
fix test against dcmtk 3.6.1
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
79
diff
changeset
|
2581 self.assertTrue(CompareTags(t, json.loads(f.read()), [ '7fe0,0000' ])) |
| 55 | 2582 |
|
60
cd3c7f70f139
test backward compatibility with Orthanc 0.9.4
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
59
diff
changeset
|
2583 t = DoGet(_REMOTE, '/instances/%s/tags?simplify' % j) |
|
cd3c7f70f139
test backward compatibility with Orthanc 0.9.4
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
59
diff
changeset
|
2584 with open(GetDatabasePath('PrivateTagsSimplify.json'), 'r') as f: |
|
80
8466dbfcb22b
fix test against dcmtk 3.6.1
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
79
diff
changeset
|
2585 self.assertTrue(CompareTags(t, json.loads(f.read()), [ |
|
8466dbfcb22b
fix test against dcmtk 3.6.1
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
79
diff
changeset
|
2586 ])) |
|
60
cd3c7f70f139
test backward compatibility with Orthanc 0.9.4
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
59
diff
changeset
|
2587 |
|
cd3c7f70f139
test backward compatibility with Orthanc 0.9.4
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
59
diff
changeset
|
2588 t = DoGet(_REMOTE, '/instances/%s/tags' % j) |
|
cd3c7f70f139
test backward compatibility with Orthanc 0.9.4
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
59
diff
changeset
|
2589 with open(GetDatabasePath('PrivateTagsFull.json'), 'r') as f: |
|
cd3c7f70f139
test backward compatibility with Orthanc 0.9.4
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
59
diff
changeset
|
2590 a = json.loads(f.read()) |
|
65
09fc27e0899a
patch for testing windows builds
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
64
diff
changeset
|
2591 aa = json.dumps(a).replace('2e+022', '2e+22') |
|
09fc27e0899a
patch for testing windows builds
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
64
diff
changeset
|
2592 tt = json.dumps(t).replace('2e+022', '2e+22') |
|
09fc27e0899a
patch for testing windows builds
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
64
diff
changeset
|
2593 self.assertEqual(aa, tt) |
| 57 | 2594 |
| 2595 | |
| 2596 def test_batch_archive(self): | |
| 2597 UploadInstance(_REMOTE, 'Knee/T1/IM-0001-0001.dcm') | |
| 2598 UploadInstance(_REMOTE, 'Knee/T1/IM-0001-0002.dcm') | |
| 2599 UploadInstance(_REMOTE, 'Knee/T2/IM-0001-0001.dcm') | |
| 2600 UploadInstance(_REMOTE, 'Knee/T2/IM-0001-0002.dcm') | |
| 2601 UploadInstance(_REMOTE, 'Brainix/Epi/IM-0001-0001.dcm') | |
| 2602 UploadInstance(_REMOTE, 'Brainix/Epi/IM-0001-0002.dcm') | |
| 2603 UploadInstance(_REMOTE, 'Brainix/Flair/IM-0001-0001.dcm') | |
| 2604 UploadInstance(_REMOTE, 'Brainix/Flair/IM-0001-0002.dcm') | |
| 2605 | |
| 2606 s = DoPost(_REMOTE, '/tools/create-archive', [ ]) | |
| 2607 z = zipfile.ZipFile(StringIO(s), "r") | |
| 2608 self.assertEqual(0, len(z.namelist())) | |
| 2609 | |
| 2610 # One patient | |
| 2611 s = DoPost(_REMOTE, '/tools/create-archive', [ 'ca29faea-b6a0e17f-067743a1-8b778011-a48b2a17' ]) | |
| 2612 z = zipfile.ZipFile(StringIO(s), "r") | |
| 2613 self.assertEqual(4, len(z.namelist())) | |
| 2614 | |
| 2615 # One patient + twice its study + one series from other patient | |
| 2616 s = DoPost(_REMOTE, '/tools/create-archive', [ | |
| 2617 'ca29faea-b6a0e17f-067743a1-8b778011-a48b2a17', | |
| 2618 '0a9b3153-2512774b-2d9580de-1fc3dcf6-3bd83918', | |
| 2619 '1e2c125c-411b8e86-3f4fe68e-a7584dd3-c6da78f0' | |
| 2620 ]) | |
| 2621 z = zipfile.ZipFile(StringIO(s), "r") | |
| 2622 self.assertEqual(6, len(z.namelist())) | |
| 2623 | |
| 2624 # One patient + one series + one instance | |
| 2625 s = DoPost(_REMOTE, '/tools/create-archive', [ | |
| 2626 'ca29faea-b6a0e17f-067743a1-8b778011-a48b2a17', | |
| 2627 '1e2c125c-411b8e86-3f4fe68e-a7584dd3-c6da78f0', | |
| 2628 '1d429ccb-bdcc78a1-7d129d6a-ba4966ed-fe4dbd87' | |
| 2629 ]) | |
| 2630 z = zipfile.ZipFile(StringIO(s), "r") | |
| 2631 self.assertEqual(7, len(z.namelist())) | |
|
59
84378ada15ab
test_decode_brainix_as_jpeg
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
58
diff
changeset
|
2632 |
|
84378ada15ab
test_decode_brainix_as_jpeg
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
58
diff
changeset
|
2633 |
|
84378ada15ab
test_decode_brainix_as_jpeg
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
58
diff
changeset
|
2634 def test_decode_brainix_as_jpeg(self): |
|
84378ada15ab
test_decode_brainix_as_jpeg
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
58
diff
changeset
|
2635 i = UploadInstance(_REMOTE, 'Brainix/Epi/IM-0001-0001.dcm')['ID'] |
|
84378ada15ab
test_decode_brainix_as_jpeg
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
58
diff
changeset
|
2636 |
|
84378ada15ab
test_decode_brainix_as_jpeg
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
58
diff
changeset
|
2637 j = GetImage(_REMOTE, '/instances/%s/preview' % i) |
|
84378ada15ab
test_decode_brainix_as_jpeg
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
58
diff
changeset
|
2638 self.assertEqual('PNG', j.format) |
|
84378ada15ab
test_decode_brainix_as_jpeg
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
58
diff
changeset
|
2639 self.assertEqual(j.size[0], 256) |
|
84378ada15ab
test_decode_brainix_as_jpeg
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
58
diff
changeset
|
2640 self.assertEqual(j.size[1], 256) |
|
84378ada15ab
test_decode_brainix_as_jpeg
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
58
diff
changeset
|
2641 |
|
84378ada15ab
test_decode_brainix_as_jpeg
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
58
diff
changeset
|
2642 j = GetImage(_REMOTE, '/instances/%s/preview' % i, headers = { 'Accept' : '*/*' }) |
|
84378ada15ab
test_decode_brainix_as_jpeg
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
58
diff
changeset
|
2643 self.assertEqual('PNG', j.format) |
|
84378ada15ab
test_decode_brainix_as_jpeg
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
58
diff
changeset
|
2644 |
|
84378ada15ab
test_decode_brainix_as_jpeg
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
58
diff
changeset
|
2645 j = GetImage(_REMOTE, '/instances/%s/preview' % i, headers = { 'Accept' : 'image/*' }) |
|
84378ada15ab
test_decode_brainix_as_jpeg
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
58
diff
changeset
|
2646 self.assertEqual('PNG', j.format) |
|
84378ada15ab
test_decode_brainix_as_jpeg
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
58
diff
changeset
|
2647 |
|
84378ada15ab
test_decode_brainix_as_jpeg
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
58
diff
changeset
|
2648 j = GetImage(_REMOTE, '/instances/%s/preview' % i, headers = { 'Accept' : 'image/png' }) |
|
84378ada15ab
test_decode_brainix_as_jpeg
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
58
diff
changeset
|
2649 self.assertEqual('PNG', j.format) |
|
84378ada15ab
test_decode_brainix_as_jpeg
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
58
diff
changeset
|
2650 |
|
84378ada15ab
test_decode_brainix_as_jpeg
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
58
diff
changeset
|
2651 j = GetImage(_REMOTE, '/instances/%s/preview' % i, headers = { 'Accept' : 'image/jpeg' }) |
|
84378ada15ab
test_decode_brainix_as_jpeg
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
58
diff
changeset
|
2652 self.assertEqual('JPEG', j.format) |
|
84378ada15ab
test_decode_brainix_as_jpeg
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
58
diff
changeset
|
2653 self.assertEqual(j.size[0], 256) |
|
84378ada15ab
test_decode_brainix_as_jpeg
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
58
diff
changeset
|
2654 self.assertEqual(j.size[1], 256) |
|
84378ada15ab
test_decode_brainix_as_jpeg
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
58
diff
changeset
|
2655 |
|
84378ada15ab
test_decode_brainix_as_jpeg
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
58
diff
changeset
|
2656 a = len(DoGet(_REMOTE, '/instances/%s/preview?quality=50' % i, headers = { 'Accept' : 'image/jpeg' })) |
|
84378ada15ab
test_decode_brainix_as_jpeg
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
58
diff
changeset
|
2657 b = len(DoGet(_REMOTE, '/instances/%s/preview' % i, headers = { 'Accept' : 'image/jpeg' })) |
|
84378ada15ab
test_decode_brainix_as_jpeg
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
58
diff
changeset
|
2658 self.assertLess(a, b) |
|
84378ada15ab
test_decode_brainix_as_jpeg
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
58
diff
changeset
|
2659 |
|
84378ada15ab
test_decode_brainix_as_jpeg
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
58
diff
changeset
|
2660 j = GetImage(_REMOTE, '/instances/%s/image-uint8' % i, headers = { 'Accept' : 'image/jpeg' }) |
|
84378ada15ab
test_decode_brainix_as_jpeg
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
58
diff
changeset
|
2661 self.assertEqual('JPEG', j.format) |
|
84378ada15ab
test_decode_brainix_as_jpeg
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
58
diff
changeset
|
2662 |
|
84378ada15ab
test_decode_brainix_as_jpeg
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
58
diff
changeset
|
2663 # 16bit encoding is not supported with JPEG |
|
84378ada15ab
test_decode_brainix_as_jpeg
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
58
diff
changeset
|
2664 self.assertRaises(Exception, lambda: GetImage(_REMOTE, '/instances/%s/image-uint16' % i, headers = { 'Accept' : 'image/jpeg' })) |
|
84378ada15ab
test_decode_brainix_as_jpeg
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
58
diff
changeset
|
2665 self.assertRaises(Exception, lambda: GetImage(_REMOTE, '/instances/%s/image-int16' % i, headers = { 'Accept' : 'image/jpeg' })) |
|
84378ada15ab
test_decode_brainix_as_jpeg
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
58
diff
changeset
|
2666 |
|
84378ada15ab
test_decode_brainix_as_jpeg
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
58
diff
changeset
|
2667 # No matching content type |
|
84378ada15ab
test_decode_brainix_as_jpeg
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
58
diff
changeset
|
2668 self.assertRaises(Exception, lambda: GetImage(_REMOTE, '/instances/%s/preview' % i, headers = { 'Accept' : 'application/pdf' })) |
|
69
83fd88230097
test_media_encodings
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
68
diff
changeset
|
2669 |
|
83fd88230097
test_media_encodings
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
68
diff
changeset
|
2670 |
|
83fd88230097
test_media_encodings
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
68
diff
changeset
|
2671 |
|
83fd88230097
test_media_encodings
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
68
diff
changeset
|
2672 def test_media_encodings(self): |
|
83fd88230097
test_media_encodings
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
68
diff
changeset
|
2673 ascii = UploadInstance(_REMOTE, 'Knee/T1/IM-0001-0001.dcm')['ID'] |
|
83fd88230097
test_media_encodings
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
68
diff
changeset
|
2674 latin1 = UploadInstance(_REMOTE, 'Brainix/Epi/IM-0001-0001.dcm')['ID'] |
|
83fd88230097
test_media_encodings
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
68
diff
changeset
|
2675 latin2 = UploadInstance(_REMOTE, 'MarekLatin2.dcm')['ID'] |
|
83fd88230097
test_media_encodings
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
68
diff
changeset
|
2676 |
|
83fd88230097
test_media_encodings
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
68
diff
changeset
|
2677 tmp = DoPost(_REMOTE, '/tools/create-media', [ascii,latin1,latin2]) |
|
83fd88230097
test_media_encodings
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
68
diff
changeset
|
2678 z = zipfile.ZipFile(StringIO(tmp), "r") |
|
83fd88230097
test_media_encodings
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
68
diff
changeset
|
2679 |
|
83fd88230097
test_media_encodings
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
68
diff
changeset
|
2680 self.assertEqual(4, len(z.namelist())) |
|
83fd88230097
test_media_encodings
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
68
diff
changeset
|
2681 self.assertTrue('IMAGES/IM0' in z.namelist()) |
|
83fd88230097
test_media_encodings
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
68
diff
changeset
|
2682 self.assertTrue('IMAGES/IM1' in z.namelist()) |
|
83fd88230097
test_media_encodings
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
68
diff
changeset
|
2683 self.assertTrue('IMAGES/IM2' in z.namelist()) |
|
83fd88230097
test_media_encodings
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
68
diff
changeset
|
2684 self.assertTrue('DICOMDIR' in z.namelist()) |
|
83fd88230097
test_media_encodings
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
68
diff
changeset
|
2685 |
|
83fd88230097
test_media_encodings
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
68
diff
changeset
|
2686 try: |
|
83fd88230097
test_media_encodings
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
68
diff
changeset
|
2687 os.remove('/tmp/DICOMDIR') |
|
83fd88230097
test_media_encodings
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
68
diff
changeset
|
2688 except: |
|
83fd88230097
test_media_encodings
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
68
diff
changeset
|
2689 # The file does not exist |
|
83fd88230097
test_media_encodings
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
68
diff
changeset
|
2690 pass |
|
83fd88230097
test_media_encodings
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
68
diff
changeset
|
2691 |
|
83fd88230097
test_media_encodings
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
68
diff
changeset
|
2692 z.extract('DICOMDIR', '/tmp') |
|
83fd88230097
test_media_encodings
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
68
diff
changeset
|
2693 a = subprocess.check_output([ FindExecutable('dciodvfy'), '/tmp/DICOMDIR' ], |
|
83fd88230097
test_media_encodings
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
68
diff
changeset
|
2694 stderr = subprocess.STDOUT).split('\n') |
|
83fd88230097
test_media_encodings
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
68
diff
changeset
|
2695 |
|
83fd88230097
test_media_encodings
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
68
diff
changeset
|
2696 a = subprocess.check_output([ FindExecutable('dcentvfy'), '/tmp/DICOMDIR' ], |
|
83fd88230097
test_media_encodings
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
68
diff
changeset
|
2697 stderr = subprocess.STDOUT).split('\n') |
|
83fd88230097
test_media_encodings
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
68
diff
changeset
|
2698 self.assertEqual(1, len(a)) |
|
83fd88230097
test_media_encodings
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
68
diff
changeset
|
2699 self.assertEqual('', a[0]) |
|
83fd88230097
test_media_encodings
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
68
diff
changeset
|
2700 |
|
83fd88230097
test_media_encodings
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
68
diff
changeset
|
2701 a = subprocess.check_output([ FindExecutable('dcm2xml'), '/tmp/DICOMDIR' ]) |
|
83fd88230097
test_media_encodings
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
68
diff
changeset
|
2702 self.assertTrue(re.search('1.3.46.670589.11.17521.5.0.3124.2008081908590448738', a) != None) |
|
83fd88230097
test_media_encodings
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
68
diff
changeset
|
2703 self.assertTrue(re.search('1.3.46.670589.11.0.0.11.4.2.0.8743.5.5396.2006120114333648576', a) != None) |
|
83fd88230097
test_media_encodings
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
68
diff
changeset
|
2704 self.assertTrue(re.search('1.2.826.0.1.3680043.2.1569.1.4.323026757.1700.1399452091.57', a) != None) |
|
83fd88230097
test_media_encodings
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
68
diff
changeset
|
2705 |
|
83fd88230097
test_media_encodings
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
68
diff
changeset
|
2706 os.remove('/tmp/DICOMDIR') |
|
71
48740070cbf1
TDD: tests for ongoing development of counter tags in C-Find
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
70
diff
changeset
|
2707 |
|
48740070cbf1
TDD: tests for ongoing development of counter tags in C-Find
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
70
diff
changeset
|
2708 |
|
48740070cbf1
TDD: tests for ongoing development of counter tags in C-Find
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
70
diff
changeset
|
2709 def test_findscu_counters(self): |
|
48740070cbf1
TDD: tests for ongoing development of counter tags in C-Find
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
70
diff
changeset
|
2710 UploadInstance(_REMOTE, 'Comunix/Ct/IM-0001-0001.dcm') |
|
48740070cbf1
TDD: tests for ongoing development of counter tags in C-Find
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
70
diff
changeset
|
2711 UploadInstance(_REMOTE, 'Comunix/Pet/IM-0001-0001.dcm') |
|
48740070cbf1
TDD: tests for ongoing development of counter tags in C-Find
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
70
diff
changeset
|
2712 UploadInstance(_REMOTE, 'Comunix/Pet/IM-0001-0002.dcm') |
|
48740070cbf1
TDD: tests for ongoing development of counter tags in C-Find
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
70
diff
changeset
|
2713 |
|
48740070cbf1
TDD: tests for ongoing development of counter tags in C-Find
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
70
diff
changeset
|
2714 i = CallFindScu([ '-k', '0008,0052=PATIENT', '-k', 'NumberOfPatientRelatedStudies' ]) |
|
48740070cbf1
TDD: tests for ongoing development of counter tags in C-Find
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
70
diff
changeset
|
2715 s = re.findall('\(0020,1200\).*?\[(.*?)\]', i) |
|
48740070cbf1
TDD: tests for ongoing development of counter tags in C-Find
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
70
diff
changeset
|
2716 self.assertEqual(1, len(s)) |
|
48740070cbf1
TDD: tests for ongoing development of counter tags in C-Find
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
70
diff
changeset
|
2717 self.assertTrue('1 ' in s) |
|
48740070cbf1
TDD: tests for ongoing development of counter tags in C-Find
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
70
diff
changeset
|
2718 |
|
48740070cbf1
TDD: tests for ongoing development of counter tags in C-Find
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
70
diff
changeset
|
2719 i = CallFindScu([ '-k', '0008,0052=PATIENT', '-k', 'NumberOfPatientRelatedSeries' ]) |
|
48740070cbf1
TDD: tests for ongoing development of counter tags in C-Find
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
70
diff
changeset
|
2720 s = re.findall('\(0020,1202\).*?\[(.*?)\]', i) |
|
48740070cbf1
TDD: tests for ongoing development of counter tags in C-Find
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
70
diff
changeset
|
2721 self.assertEqual(1, len(s)) |
|
48740070cbf1
TDD: tests for ongoing development of counter tags in C-Find
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
70
diff
changeset
|
2722 self.assertTrue('2 ' in s) |
|
48740070cbf1
TDD: tests for ongoing development of counter tags in C-Find
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
70
diff
changeset
|
2723 |
|
48740070cbf1
TDD: tests for ongoing development of counter tags in C-Find
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
70
diff
changeset
|
2724 i = CallFindScu([ '-k', '0008,0052=PATIENT', '-k', 'NumberOfPatientRelatedInstances' ]) |
|
48740070cbf1
TDD: tests for ongoing development of counter tags in C-Find
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
70
diff
changeset
|
2725 s = re.findall('\(0020,1204\).*?\[(.*?)\]', i) |
|
48740070cbf1
TDD: tests for ongoing development of counter tags in C-Find
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
70
diff
changeset
|
2726 self.assertEqual(1, len(s)) |
|
48740070cbf1
TDD: tests for ongoing development of counter tags in C-Find
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
70
diff
changeset
|
2727 self.assertTrue('3 ' in s) |
|
48740070cbf1
TDD: tests for ongoing development of counter tags in C-Find
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
70
diff
changeset
|
2728 |
|
48740070cbf1
TDD: tests for ongoing development of counter tags in C-Find
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
70
diff
changeset
|
2729 i = CallFindScu([ '-k', '0008,0052=STUDY', '-k', 'NumberOfStudyRelatedSeries' ]) |
|
48740070cbf1
TDD: tests for ongoing development of counter tags in C-Find
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
70
diff
changeset
|
2730 s = re.findall('\(0020,1206\).*?\[(.*?)\]', i) |
|
48740070cbf1
TDD: tests for ongoing development of counter tags in C-Find
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
70
diff
changeset
|
2731 self.assertEqual(1, len(s)) |
|
48740070cbf1
TDD: tests for ongoing development of counter tags in C-Find
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
70
diff
changeset
|
2732 self.assertTrue('2 ' in s) |
|
48740070cbf1
TDD: tests for ongoing development of counter tags in C-Find
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
70
diff
changeset
|
2733 |
|
48740070cbf1
TDD: tests for ongoing development of counter tags in C-Find
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
70
diff
changeset
|
2734 i = CallFindScu([ '-k', '0008,0052=STUDY', '-k', 'NumberOfStudyRelatedInstances' ]) |
|
48740070cbf1
TDD: tests for ongoing development of counter tags in C-Find
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
70
diff
changeset
|
2735 s = re.findall('\(0020,1208\).*?\[(.*?)\]', i) |
|
48740070cbf1
TDD: tests for ongoing development of counter tags in C-Find
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
70
diff
changeset
|
2736 self.assertEqual(1, len(s)) |
|
48740070cbf1
TDD: tests for ongoing development of counter tags in C-Find
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
70
diff
changeset
|
2737 self.assertTrue('3 ' in s) |
|
48740070cbf1
TDD: tests for ongoing development of counter tags in C-Find
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
70
diff
changeset
|
2738 |
|
48740070cbf1
TDD: tests for ongoing development of counter tags in C-Find
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
70
diff
changeset
|
2739 i = CallFindScu([ '-k', '0008,0052=SERIES', '-k', 'NumberOfSeriesRelatedInstances' ]) |
|
48740070cbf1
TDD: tests for ongoing development of counter tags in C-Find
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
70
diff
changeset
|
2740 s = re.findall('\(0020,1209\).*?\[(.*?)\]', i) |
|
48740070cbf1
TDD: tests for ongoing development of counter tags in C-Find
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
70
diff
changeset
|
2741 self.assertEqual(2, len(s)) |
|
48740070cbf1
TDD: tests for ongoing development of counter tags in C-Find
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
70
diff
changeset
|
2742 self.assertTrue('1 ' in s) |
|
48740070cbf1
TDD: tests for ongoing development of counter tags in C-Find
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
70
diff
changeset
|
2743 self.assertTrue('2 ' in s) |
|
48740070cbf1
TDD: tests for ongoing development of counter tags in C-Find
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
70
diff
changeset
|
2744 |
|
48740070cbf1
TDD: tests for ongoing development of counter tags in C-Find
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
70
diff
changeset
|
2745 i = CallFindScu([ '-k', '0008,0052=STUDY', '-k', 'ModalitiesInStudy' ]) |
|
48740070cbf1
TDD: tests for ongoing development of counter tags in C-Find
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
70
diff
changeset
|
2746 s = re.findall('\(0008,0061\).*?\[(.*?)\]', i) |
|
48740070cbf1
TDD: tests for ongoing development of counter tags in C-Find
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
70
diff
changeset
|
2747 self.assertEqual(1, len(s)) |
|
48740070cbf1
TDD: tests for ongoing development of counter tags in C-Find
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
70
diff
changeset
|
2748 t = map(lambda x: x.strip(), s[0].split('\\')) |
|
48740070cbf1
TDD: tests for ongoing development of counter tags in C-Find
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
70
diff
changeset
|
2749 self.assertTrue('PT' in t) |
|
48740070cbf1
TDD: tests for ongoing development of counter tags in C-Find
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
70
diff
changeset
|
2750 self.assertTrue('CT' in t) |
|
48740070cbf1
TDD: tests for ongoing development of counter tags in C-Find
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
70
diff
changeset
|
2751 |
|
48740070cbf1
TDD: tests for ongoing development of counter tags in C-Find
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
70
diff
changeset
|
2752 i = CallFindScu([ '-k', '0008,0052=STUDY', '-k', 'SOPClassesInStudy' ]) |
|
48740070cbf1
TDD: tests for ongoing development of counter tags in C-Find
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
70
diff
changeset
|
2753 s = re.findall('\(0008,0062\).*?\[(.*?)\]', i) |
|
48740070cbf1
TDD: tests for ongoing development of counter tags in C-Find
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
70
diff
changeset
|
2754 self.assertEqual(1, len(s)) |
|
48740070cbf1
TDD: tests for ongoing development of counter tags in C-Find
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
70
diff
changeset
|
2755 t = map(lambda x: x.strip(), s[0].split('\\')) |
|
48740070cbf1
TDD: tests for ongoing development of counter tags in C-Find
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
70
diff
changeset
|
2756 self.assertTrue('1.2.840.10008.5.1.4.1.1.2' in t) |
|
48740070cbf1
TDD: tests for ongoing development of counter tags in C-Find
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
70
diff
changeset
|
2757 self.assertTrue('1.2.840.10008.5.1.4.1.1.128' in t) |
|
48740070cbf1
TDD: tests for ongoing development of counter tags in C-Find
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
70
diff
changeset
|
2758 |
|
48740070cbf1
TDD: tests for ongoing development of counter tags in C-Find
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
70
diff
changeset
|
2759 |
|
78
b89af51797ff
test_decode_transfer_syntax
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
74
diff
changeset
|
2760 def test_decode_transfer_syntax(self): |
|
b89af51797ff
test_decode_transfer_syntax
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
74
diff
changeset
|
2761 def Check(t, md5): |
|
b89af51797ff
test_decode_transfer_syntax
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
74
diff
changeset
|
2762 i = UploadInstance(_REMOTE, 'TransferSyntaxes/%s.dcm' % t)['ID'] |
|
b89af51797ff
test_decode_transfer_syntax
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
74
diff
changeset
|
2763 |
|
b89af51797ff
test_decode_transfer_syntax
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
74
diff
changeset
|
2764 if md5 == None: |
|
b89af51797ff
test_decode_transfer_syntax
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
74
diff
changeset
|
2765 self.assertRaises(Exception, lambda: DoGet(_REMOTE, '/instances/%s/preview' % i)) |
|
b89af51797ff
test_decode_transfer_syntax
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
74
diff
changeset
|
2766 else: |
|
b89af51797ff
test_decode_transfer_syntax
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
74
diff
changeset
|
2767 m = ComputeMD5(DoGet(_REMOTE, '/instances/%s/preview' % i)) |
|
b89af51797ff
test_decode_transfer_syntax
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
74
diff
changeset
|
2768 self.assertEqual(m, md5) |
|
b89af51797ff
test_decode_transfer_syntax
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
74
diff
changeset
|
2769 |
|
b89af51797ff
test_decode_transfer_syntax
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
74
diff
changeset
|
2770 Check('1.2.840.10008.1.2.1', 'fae08d5415c4c0cd2cdbae4522408631') |
|
b89af51797ff
test_decode_transfer_syntax
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
74
diff
changeset
|
2771 Check('1.2.840.10008.1.2.2', 'f3d9784768b8feb54d6a50b6d5c37682') |
|
b89af51797ff
test_decode_transfer_syntax
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
74
diff
changeset
|
2772 Check('1.2.840.10008.1.2.4.50', '496326046974eea718dbc16b997c646b') |
|
b89af51797ff
test_decode_transfer_syntax
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
74
diff
changeset
|
2773 Check('1.2.840.10008.1.2.4.51', 'ccbe75909fe5c9f7361b48416a53fc41') |
|
b89af51797ff
test_decode_transfer_syntax
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
74
diff
changeset
|
2774 Check('1.2.840.10008.1.2.4.57', '7bbefe11d976b1be4e568915c6a82fc3') |
|
b89af51797ff
test_decode_transfer_syntax
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
74
diff
changeset
|
2775 Check('1.2.840.10008.1.2.4.70', '7132cfbc457305b04b59787030c785d2') |
|
b89af51797ff
test_decode_transfer_syntax
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
74
diff
changeset
|
2776 Check('1.2.840.10008.1.2.4.80', '6ff51ae525d362e0d04f550a64075a0e') |
|
b89af51797ff
test_decode_transfer_syntax
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
74
diff
changeset
|
2777 Check('1.2.840.10008.1.2.4.81', '801579ae7cbf28e604ea74f2c99fa2ca') |
|
b89af51797ff
test_decode_transfer_syntax
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
74
diff
changeset
|
2778 Check('1.2.840.10008.1.2.5', '6ff51ae525d362e0d04f550a64075a0e') # RLE, supported since Orthanc 1.0.1 |
|
b89af51797ff
test_decode_transfer_syntax
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
74
diff
changeset
|
2779 Check('1.2.840.10008.1.2', 'd54aed9f67a100984b42942cc2e9939b') |
|
b89af51797ff
test_decode_transfer_syntax
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
74
diff
changeset
|
2780 Check('1.2.840.10008.1.2.4.90', None) # JPEG-2000 image, not supported |
|
b89af51797ff
test_decode_transfer_syntax
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
74
diff
changeset
|
2781 Check('1.2.840.10008.1.2.4.91', None) # JPEG-2000 image, not supported |
| 79 | 2782 |
| 2783 | |
| 2784 def test_raw_frame(self): | |
| 2785 s = UploadInstance(_REMOTE, 'Issue22.dcm')['ID'] | |
| 2786 self.assertEqual(24, len(DoGet(_REMOTE, '/instances/%s/frames' % s))) | |
| 2787 a = DoGet(_REMOTE, '/instances/%s/frames/0/raw' % s) | |
| 2788 self.assertEqual(512 * 512 * 2, len(a)) | |
| 2789 self.assertEqual(512 * 512 * 2, len(DoGet(_REMOTE, '/instances/%s/frames/23/raw' % s))) | |
| 2790 self.assertRaises(Exception, lambda: DoGet(_REMOTE, '/instances/%s/frames/24/raw' % s)) | |
| 2791 self.assertEqual('1914287dc4d958eca21fdaacfb3482fa', ComputeMD5(a)) | |
| 2792 | |
| 2793 s = UploadInstance(_REMOTE, 'Multiframe.dcm')['ID'] | |
| 2794 self.assertEqual(76, len(DoGet(_REMOTE, '/instances/%s/frames' % s))) | |
| 2795 self.assertEqual(186274, len(DoGet(_REMOTE, '/instances/%s/frames/0/raw' % s))) | |
| 2796 self.assertEqual(189424, len(DoGet(_REMOTE, '/instances/%s/frames/75/raw' % s))) | |
| 2797 self.assertRaises(Exception, lambda: DoGet(_REMOTE, '/instances/%s/frames/76/raw' % s)) | |
| 2798 im = GetImage(_REMOTE, '/instances/%s/frames/0/raw' % s) | |
| 2799 self.assertEqual("L", im.mode) | |
| 2800 self.assertEqual(512, im.size[0]) | |
| 2801 self.assertEqual(512, im.size[1]) | |
| 2802 | |
| 2803 # Test an image with 2 JPEG frames spread over multiple fragments | |
| 2804 s = UploadInstance(_REMOTE, 'LenaTwiceWithFragments.dcm')['ID'] | |
| 2805 self.assertEqual(2, len(DoGet(_REMOTE, '/instances/%s/frames' % s))) | |
| 2806 a = DoGet(_REMOTE, '/instances/%s/frames/0/raw' % s) | |
| 2807 b = DoGet(_REMOTE, '/instances/%s/frames/1/raw' % s) | |
| 2808 self.assertEqual(69214, len(a)) | |
| 2809 self.assertEqual(ComputeMD5(a), ComputeMD5(b)) | |
| 2810 self.assertRaises(Exception, lambda: DoGet(_REMOTE, '/instances/%s/frames/2/raw' % s)) | |
| 2811 im = GetImage(_REMOTE, '/instances/%s/frames/0/raw' % s) | |
| 2812 self.assertEqual("RGB", im.mode) | |
| 2813 self.assertEqual(512, im.size[0]) | |
| 2814 self.assertEqual(512, im.size[1]) | |
| 2815 im = GetImage(_REMOTE, '/instances/%s/frames/0/preview' % s) | |
| 2816 self.assertEqual("RGB", im.mode) | |
| 2817 self.assertEqual(512, im.size[0]) | |
| 2818 self.assertEqual(512, im.size[1]) | |
| 81 | 2819 |
| 2820 | |
| 2821 | |
| 2822 def test_rest_movescu(self): | |
| 2823 self.assertEqual(0, len(DoGet(_REMOTE, '/patients'))) | |
| 2824 | |
| 2825 # Upload 4 instances | |
| 2826 UploadInstance(_REMOTE, 'Brainix/Flair/IM-0001-0001.dcm') | |
| 2827 UploadInstance(_REMOTE, 'Brainix/Flair/IM-0001-0002.dcm') | |
| 2828 UploadInstance(_REMOTE, 'Brainix/Epi/IM-0001-0001.dcm') | |
| 2829 UploadInstance(_REMOTE, 'Knee/T2/IM-0001-0001.dcm') | |
| 2830 | |
| 2831 self.assertEqual(2, len(DoGet(_REMOTE, '/patients'))) | |
| 2832 for p in DoGet(_REMOTE, '/patients'): | |
| 2833 DoPost(_REMOTE, '/modalities/orthanctest/store', p) | |
| 2834 DoDelete(_REMOTE, '/patients/%s' % p) | |
| 2835 | |
| 2836 self.assertEqual(0, len(DoGet(_REMOTE, '/patients'))) | |
| 2837 | |
| 2838 # Upload instance Brainix/Flair/IM-0001-0001.dcm | |
| 2839 DoPost(_REMOTE, '/modalities/orthanctest/move', { 'Level' : 'Instance', | |
| 2840 'Resources' : [ | |
| 2841 { | |
| 2842 'StudyInstanceUID' : '2.16.840.1.113669.632.20.1211.10000357775', | |
| 2843 'SeriesInstanceUID' : '1.3.46.670589.11.0.0.11.4.2.0.8743.5.5396.2006120114285654497', | |
| 2844 'SOPInstanceUID' : '1.3.46.670589.11.0.0.11.4.2.0.8743.5.5396.2006120114314079549', | |
| 2845 } | |
| 2846 ]}) | |
| 2847 | |
| 2848 # Upload series Brainix/Flair/* | |
| 2849 self.assertEqual(1, len(DoGet(_REMOTE, '/patients'))) | |
| 2850 self.assertEqual(1, len(DoGet(_REMOTE, '/studies'))) | |
| 2851 self.assertEqual(1, len(DoGet(_REMOTE, '/series'))) | |
| 2852 self.assertEqual(1, len(DoGet(_REMOTE, '/instances'))) | |
| 2853 | |
| 2854 DoPost(_REMOTE, '/modalities/orthanctest/move', { 'Level' : 'Series', | |
| 2855 'Resources' : [ | |
| 2856 { | |
| 2857 'StudyInstanceUID' : '2.16.840.1.113669.632.20.1211.10000357775', | |
| 2858 'SeriesInstanceUID' : '1.3.46.670589.11.0.0.11.4.2.0.8743.5.5396.2006120114285654497', | |
| 2859 } | |
| 2860 ]}) | |
| 2861 self.assertEqual(1, len(DoGet(_REMOTE, '/patients'))) | |
| 2862 self.assertEqual(1, len(DoGet(_REMOTE, '/studies'))) | |
| 2863 self.assertEqual(1, len(DoGet(_REMOTE, '/series'))) | |
| 2864 self.assertEqual(2, len(DoGet(_REMOTE, '/instances'))) | |
| 2865 | |
| 2866 # Upload series Brainix/Epi/* | |
| 2867 DoPost(_REMOTE, '/modalities/orthanctest/move', { 'Level' : 'Series', | |
| 2868 'Resources' : [ | |
| 2869 { | |
| 2870 'StudyInstanceUID' : '2.16.840.1.113669.632.20.1211.10000357775', | |
| 2871 'SeriesInstanceUID' : '1.3.46.670589.11.0.0.11.4.2.0.8743.5.5396.2006120114314125550', | |
| 2872 } | |
| 2873 ]}) | |
| 2874 self.assertEqual(1, len(DoGet(_REMOTE, '/patients'))) | |
| 2875 self.assertEqual(1, len(DoGet(_REMOTE, '/studies'))) | |
| 2876 self.assertEqual(2, len(DoGet(_REMOTE, '/series'))) | |
| 2877 self.assertEqual(3, len(DoGet(_REMOTE, '/instances'))) | |
| 2878 | |
| 2879 # Upload study Knee/* | |
| 2880 DoPost(_REMOTE, '/modalities/orthanctest/move', { 'Level' : 'Study', | |
| 2881 'Resources' : [ | |
| 2882 { | |
| 2883 'StudyInstanceUID' : '2.16.840.1.113669.632.20.121711.10000160881', | |
| 2884 } | |
| 2885 ]}) | |
| 2886 self.assertEqual(2, len(DoGet(_REMOTE, '/patients'))) | |
| 2887 self.assertEqual(2, len(DoGet(_REMOTE, '/studies'))) | |
| 2888 self.assertEqual(3, len(DoGet(_REMOTE, '/series'))) | |
| 2889 self.assertEqual(4, len(DoGet(_REMOTE, '/instances'))) | |
| 2890 | |
| 2891 # Reset | |
| 2892 for p in DoGet(_REMOTE, '/patients'): | |
| 2893 DoDelete(_REMOTE, '/patients/%s' % p) | |
| 2894 | |
| 2895 self.assertEqual(0, len(DoGet(_REMOTE, '/patients'))) | |
| 2896 | |
| 2897 | |
| 2898 # Upload all at once | |
| 2899 DoPost(_REMOTE, '/modalities/orthanctest/move', { 'Level' : 'Study', | |
| 2900 'Resources' : [ | |
| 2901 { | |
| 2902 'StudyInstanceUID' : '2.16.840.1.113669.632.20.121711.10000160881', | |
| 2903 }, | |
| 2904 { | |
| 2905 'StudyInstanceUID' : '2.16.840.1.113669.632.20.1211.10000357775', | |
| 2906 } | |
| 2907 ]}) | |
| 2908 self.assertEqual(2, len(DoGet(_REMOTE, '/patients'))) | |
| 2909 self.assertEqual(2, len(DoGet(_REMOTE, '/studies'))) | |
| 2910 self.assertEqual(3, len(DoGet(_REMOTE, '/series'))) | |
| 2911 self.assertEqual(4, len(DoGet(_REMOTE, '/instances'))) | |
| 2912 | |
|
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2913 |
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2914 |
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2915 def test_reconstruct_json(self): |
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2916 self.assertEqual(0, len(DoGet(_REMOTE, '/patients'))) |
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2917 |
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|
2918 instance = UploadInstance(_REMOTE, 'DummyCT.dcm')['ID'] |
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2919 first = DoGet(_REMOTE, '/instances/%s/tags' % instance) |
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2920 |
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|
2921 self.assertEqual('TWINOW', first['0008,1010']['Value']) |
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2922 self.assertEqual(2, len(DoGet(_REMOTE, '/instances/%s/attachments' % instance))) |
|
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2923 |
|
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|
2924 # Cannot delete the "DICOM" attachment |
|
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|
2925 self.assertRaises(Exception, lambda: DoDelete(_REMOTE, '/instances/%s/attachments/dicom' % instance)) |
|
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2926 |
|
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|
2927 # Can delete the "DICOM as JSON" attachment |
|
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|
2928 r = DoDelete(_REMOTE, '/instances/%s/attachments/dicom-as-json' % instance) |
|
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|
2929 self.assertTrue(type(r) is dict and len(r) == 0) |
|
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2930 |
|
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|
2931 # Only the "DICOM" attachment subsists |
|
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|
2932 self.assertEqual(1, len(DoGet(_REMOTE, '/instances/%s/attachments' % instance))) |
|
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2933 |
|
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|
2934 # Cannot manually reconstruct the "DICOM as JSON" attachment |
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2935 self.assertRaises(Exception, lambda: DoPut(_REMOTE, '/patients/%s/attachments/dicom-as-json' % patient, 'hello')) |
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2936 |
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|
2937 # Transparently reconstruct the "DICOM as JSON" attachment |
|
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2938 self.assertRaises(Exception, lambda: DoGet(_REMOTE, '/instances/%s/attachments/dicom-as-json' % instance)) |
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2939 second = DoGet(_REMOTE, '/instances/%s/tags' % instance) |
|
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|
2940 self.assertEqual(2, len(DoGet(_REMOTE, '/instances/%s/attachments' % instance))) |
|
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|
2941 |
|
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diff
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|
2942 third = DoGet(_REMOTE, '/instances/%s/attachments/dicom-as-json/data' % instance) |
|
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|
2943 self.assertEqual(str(first), str(second)) |
|
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|
2944 self.assertEqual(str(first), str(third)) |