Mercurial > hg > orthanc-tests
annotate Tests/Tests.py @ 372:e9b03d8f3b78
fix for DCMTK 3.6.6
| author | Sebastien Jodogne <s.jodogne@gmail.com> |
|---|---|
| date | Tue, 26 Jan 2021 09:16:18 +0100 |
| parents | 24d93b42873a |
| children | f673153f27a4 |
| rev | line source |
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| 22 | 1 #!/usr/bin/env python |
| 2 # -*- coding: utf-8 -*- | |
| 3 | |
| 4 | |
| 3 | 5 # Orthanc - A Lightweight, RESTful DICOM Store |
| 73 | 6 # Copyright (C) 2012-2016 Sebastien Jodogne, Medical Physics |
| 3 | 7 # Department, University Hospital of Liege, Belgium |
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8 # Copyright (C) 2017-2021 Osimis S.A., Belgium |
| 3 | 9 # |
| 10 # This program is free software: you can redistribute it and/or | |
| 11 # modify it under the terms of the GNU General Public License as | |
| 12 # published by the Free Software Foundation, either version 3 of the | |
| 13 # License, or (at your option) any later version. | |
| 14 # | |
| 15 # This program is distributed in the hope that it will be useful, but | |
| 16 # WITHOUT ANY WARRANTY; without even the implied warranty of | |
| 17 # MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU | |
| 18 # General Public License for more details. | |
| 19 # | |
| 20 # You should have received a copy of the GNU General Public License | |
| 21 # along with this program. If not, see <http://www.gnu.org/licenses/>. | |
| 22 | |
| 23 | |
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24 import base64 |
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25 import bz2 |
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26 import copy |
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27 import pprint |
| 14 | 28 import tempfile |
| 3 | 29 import unittest |
| 295 | 30 import shutil |
| 3 | 31 |
| 11 | 32 from PIL import ImageChops |
| 3 | 33 from Toolbox import * |
| 13 | 34 from xml.dom import minidom |
| 312 | 35 from datetime import datetime |
| 3 | 36 |
| 37 _LOCAL = None | |
| 38 _REMOTE = None | |
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39 _DOCKER = False |
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40 |
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41 |
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42 def SetOrthancParameters(local, remote, withinDocker): |
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43 global _LOCAL, _REMOTE, _DOCKER |
| 3 | 44 _LOCAL = local |
| 45 _REMOTE = remote | |
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46 _DOCKER = withinDocker |
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47 |
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48 |
| 14 | 49 def ExtractDicomTags(rawDicom, tags): |
| 50 with tempfile.NamedTemporaryFile(delete = True) as f: | |
| 51 f.write(rawDicom) | |
| 52 f.flush() | |
| 45 | 53 data = subprocess.check_output([ FindExecutable('dcm2xml'), f.name ]) |
| 14 | 54 |
| 55 result = [] | |
| 56 for tag in tags: | |
| 57 match = re.search('<element[^>]+name="%s">([^>]*)</element>' % tag, data) | |
| 58 if match == None: | |
| 59 result.append('') | |
| 60 else: | |
| 61 result.append(match.group(1)) | |
| 62 | |
| 63 return result | |
| 64 | |
| 65 | |
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66 def CompareLists(a, b): |
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67 if len(a) != len(b): |
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68 return False |
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69 |
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70 for i in range(len(a)): |
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71 d = a[i] - b[i] |
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72 if abs(d) >= 0.51: # Add some tolerance for rounding errors |
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73 return False |
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74 |
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75 return True |
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76 |
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77 |
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78 def CompareTags(a, b, tagsToIgnore): |
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79 for i in tagsToIgnore: |
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80 if i in a: |
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81 del a[i] |
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82 if i in b: |
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83 del b[i] |
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84 |
| 123 | 85 if a.keys() == b.keys(): |
| 86 return True | |
| 87 else: | |
| 88 print('Mismatch in tags: %s' % str(set(a.keys()) ^ set(b.keys()))) | |
| 89 return False | |
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90 |
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91 |
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92 def CallFindScu(args): |
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93 p = subprocess.Popen([ FindExecutable('findscu'), |
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94 '-P', '-aec', _REMOTE['DicomAet'], '-aet', _LOCAL['DicomAet'], |
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95 _REMOTE['Server'], str(_REMOTE['DicomPort']) ] + args, |
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96 stderr=subprocess.PIPE) |
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97 return p.communicate()[1] |
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98 |
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99 |
| 142 | 100 def GetMoveScuCommand(): |
| 101 return [ | |
| 102 FindExecutable('movescu'), | |
| 103 '--move', _LOCAL['DicomAet'], # Target AET (i.e. storescp) | |
| 104 '--call', _REMOTE['DicomAet'], # Called AET (i.e. Orthanc) | |
| 105 '--aetitle', _LOCAL['DicomAet'], # Calling AET (i.e. storescp) | |
| 106 _REMOTE['Server'], | |
| 107 str(_REMOTE['DicomPort']) | |
| 108 ] | |
| 109 | |
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110 |
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111 def CallMoveScu(args): |
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112 try: |
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113 subprocess.check_call(GetMoveScuCommand() + args, |
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114 stderr = subprocess.PIPE) |
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115 except subprocess.CalledProcessError as e: |
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116 # The error code "69" corresponds to "EXITCODE_CMOVE_ERROR", |
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117 # that has been introduced in DCMTK 3.6.2. This error code is |
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118 # expected by some tests that try and C-MOVE non-existing |
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119 # DICOM instances. |
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120 # https://groups.google.com/d/msg/orthanc-users/DCRc5NeSCbM/DG-pSWj-BwAJ |
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121 if e.returncode != 69: |
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122 raise e |
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123 |
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124 |
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125 def GenerateTestSequence(): |
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126 return [ |
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127 { |
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128 'StudyDescription': 'Hello^', |
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129 'ReferencedStudySequence' : [ |
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130 { |
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131 'StudyDescription': 'Toto', |
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132 }, |
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133 { |
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134 'StudyDescription': 'Tata', |
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135 }, |
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136 ] |
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137 }, |
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138 { |
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139 'StudyDescription': 'Sébastien^', |
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140 'StudyDate' : '19700202', |
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141 } |
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142 ] |
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143 |
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144 |
| 3 | 145 class Orthanc(unittest.TestCase): |
| 146 def setUp(self): | |
| 83 | 147 if (sys.version_info >= (3, 0)): |
| 148 # Remove annoying warnings about unclosed socket in Python 3 | |
| 149 import warnings | |
| 150 warnings.simplefilter("ignore", ResourceWarning) | |
| 151 | |
| 3 | 152 DropOrthanc(_LOCAL) |
| 153 DropOrthanc(_REMOTE) | |
| 174 | 154 UninstallLuaCallbacks(_REMOTE) |
| 312 | 155 #print("%s: In test %s" % (datetime.now(), self._testMethodName)) |
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156 |
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157 def AssertSameImages(self, truth, url): |
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158 im = GetImage(_REMOTE, url) |
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159 self.assertTrue(CompareLists(truth, im.getdata())) |
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160 |
| 3 | 161 |
| 162 def test_system(self): | |
| 177 | 163 self.assertTrue('Version' in DoGet(_REMOTE, '/system')) |
| 164 self.assertEqual('0', DoGet(_REMOTE, '/statistics')['TotalDiskSize']) | |
| 165 self.assertEqual('0', DoGet(_REMOTE, '/statistics')['TotalUncompressedSize']) | |
| 166 | |
| 167 systemInfo = DoGet(_REMOTE, '/system') | |
| 168 if systemInfo["Version"] == "mainline": | |
| 169 print "Skipping version checks since you're currently in mainline" | |
| 170 return | |
| 171 | |
| 173 | 172 self.assertTrue(IsOrthancVersionAbove(_LOCAL, 0, 8, 6)) |
| 173 self.assertFalse(IsOrthancVersionAbove(_LOCAL, 0, 8, 7)) | |
| 174 self.assertTrue(IsOrthancVersionAbove(_LOCAL, 0, 7, 6)) | |
| 175 self.assertFalse(IsOrthancVersionAbove(_LOCAL, 0, 9, 6)) | |
| 176 self.assertFalse(IsOrthancVersionAbove(_LOCAL, 1, 8, 6)) | |
| 3 | 177 |
| 178 def test_upload(self): | |
| 173 | 179 self.assertEqual('0', DoGet(_REMOTE, '/statistics')['TotalDiskSize']) |
| 180 self.assertEqual('0', DoGet(_REMOTE, '/statistics')['TotalUncompressedSize']) | |
| 181 | |
| 182 sizeDummyCT = 2472 | |
| 183 sizeOverwrite = 2476 | |
| 184 instance = '66a662ce-7430e543-bad44d47-0dc5a943-ec7a538d' | |
| 185 | |
| 3 | 186 u = UploadInstance(_REMOTE, 'DummyCT.dcm') |
| 183 | 187 self.assertEqual(instance, u['ID']) |
| 3 | 188 self.assertEqual('Success', u['Status']) |
| 173 | 189 |
| 183 | 190 if True: |
| 191 # New test for Orthanc 1.4.3 | |
| 192 self.assertEqual('f2635388-f01d497a-15f7c06b-ad7dba06-c4c599fe', u['ParentSeries']) | |
| 193 self.assertEqual('b9c08539-26f93bde-c81ab0d7-bffaf2cb-a4d0bdd0', u['ParentStudy']) | |
| 194 self.assertEqual('6816cb19-844d5aee-85245eba-28e841e6-2414fae2', u['ParentPatient']) | |
| 195 | |
| 173 | 196 j = int(DoGet(_REMOTE, '/instances/%s/attachments/dicom-as-json/size' % instance)) |
| 197 s = sizeDummyCT + j | |
| 198 self.assertEqual('%d' % s, DoGet(_REMOTE, '/statistics')['TotalDiskSize']) | |
| 199 self.assertEqual('%d' % s, DoGet(_REMOTE, '/statistics')['TotalUncompressedSize']) | |
| 200 | |
| 3 | 201 u = UploadInstance(_REMOTE, 'DummyCT.dcm') |
| 202 self.assertEqual(1, len(DoGet(_REMOTE, '/patients'))) | |
| 203 self.assertEqual(1, len(DoGet(_REMOTE, '/studies'))) | |
| 204 self.assertEqual(1, len(DoGet(_REMOTE, '/series'))) | |
| 205 self.assertEqual(1, len(DoGet(_REMOTE, '/instances'))) | |
| 173 | 206 self.assertEqual('%d' % s, DoGet(_REMOTE, '/statistics')['TotalDiskSize']) |
| 207 self.assertEqual('%d' % s, DoGet(_REMOTE, '/statistics')['TotalUncompressedSize']) | |
| 208 | |
| 209 i = DoGet(_REMOTE, '/instances/%s/simplified-tags' % instance) | |
| 3 | 210 self.assertEqual('20070101', i['StudyDate']) |
| 173 | 211 self.assertEqual('KNIX', i['PatientName']) |
| 212 | |
| 213 if IsOrthancVersionAbove(_REMOTE, 1, 4, 2): | |
| 214 # Overwriting | |
| 215 self.assertEqual('Success', u['Status']) | |
| 216 else: | |
| 217 self.assertEqual('AlreadyStored', u['Status']) | |
| 218 | |
| 219 u = UploadInstance(_REMOTE, 'DummyCT-overwrite.dcm') | |
| 220 self.assertEqual(1, len(DoGet(_REMOTE, '/patients'))) | |
| 221 self.assertEqual(1, len(DoGet(_REMOTE, '/studies'))) | |
| 222 self.assertEqual(1, len(DoGet(_REMOTE, '/series'))) | |
| 223 self.assertEqual(1, len(DoGet(_REMOTE, '/instances'))) | |
| 224 | |
| 225 if IsOrthancVersionAbove(_REMOTE, 1, 4, 2): | |
| 226 # Overwriting | |
| 227 self.assertEqual('Success', u['Status']) | |
| 228 j2 = int(DoGet(_REMOTE, '/instances/%s/attachments/dicom-as-json/size' % instance)) | |
| 229 s2 = sizeOverwrite + j2 | |
| 230 self.assertNotEqual(s, s2) | |
| 231 self.assertNotEqual(j, j2) | |
| 232 self.assertEqual('%d' % s2, DoGet(_REMOTE, '/statistics')['TotalDiskSize']) | |
| 233 self.assertEqual('%d' % s2, DoGet(_REMOTE, '/statistics')['TotalUncompressedSize']) | |
| 234 i = DoGet(_REMOTE, '/instances/%s/simplified-tags' % instance) | |
| 235 self.assertEqual('ANOTHER', i['PatientName']) | |
| 236 else: | |
| 237 self.assertEqual('AlreadyStored', u['Status']) | |
| 238 self.assertEqual('%d' % s, DoGet(_REMOTE, '/statistics')['TotalDiskSize']) | |
| 239 self.assertEqual('%d' % s, DoGet(_REMOTE, '/statistics')['TotalUncompressedSize']) | |
| 3 | 240 |
| 5 | 241 def test_upload_2(self): |
| 3 | 242 i = UploadInstance(_REMOTE, 'DummyCT.dcm')['ID'] |
| 243 instance = DoGet(_REMOTE, '/instances/%s' % i) | |
| 244 self.assertEqual(i, instance['ID']) | |
| 245 self.assertEqual('1.2.840.113619.2.176.2025.1499492.7040.1171286242.109', | |
| 246 instance['MainDicomTags']['SOPInstanceUID']) | |
| 247 | |
| 248 series = DoGet(_REMOTE, '/series/%s' % instance['ParentSeries']) | |
| 249 self.assertEqual('1.2.840.113619.2.176.2025.1499492.7391.1171285944.394', | |
| 250 series['MainDicomTags']['SeriesInstanceUID']) | |
| 251 | |
| 252 study = DoGet(_REMOTE, '/studies/%s' % series['ParentStudy']) | |
| 253 self.assertEqual('1.2.840.113619.2.176.2025.1499492.7391.1171285944.390', | |
| 254 study['MainDicomTags']['StudyInstanceUID']) | |
| 255 | |
| 256 patient = DoGet(_REMOTE, '/patients/%s' % study['ParentPatient']) | |
| 257 self.assertEqual('ozp00SjY2xG', | |
| 258 patient['MainDicomTags']['PatientID']) | |
| 259 | |
| 260 dicom = DoGet(_REMOTE, '/instances/%s/file' % instance['ID']) | |
| 261 self.assertEqual(2472, len(dicom)) | |
| 262 self.assertEqual('3e29b869978b6db4886355a2b1132124', ComputeMD5(dicom)) | |
| 263 self.assertEqual(1, len(DoGet(_REMOTE, '/instances/%s/frames' % i))) | |
| 264 self.assertEqual('TWINOW', DoGet(_REMOTE, '/instances/%s/simplified-tags' % i)['StationName']) | |
| 265 self.assertEqual('TWINOW', DoGet(_REMOTE, '/instances/%s/tags' % i)['0008,1010']['Value']) | |
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266 self.assertEqual('TWINOW', DoGet(_REMOTE, '/instances/%s/tags?simplify' % i)['StationName']) |
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267 self.assertEqual('TWINOW', DoGet(_REMOTE, '/instances/%s/tags?short' % i)['0008,1010']) |
| 3 | 268 |
| 269 | |
| 5 | 270 def test_images(self): |
| 271 i = UploadInstance(_REMOTE, 'Phenix/IM-0001-0001.dcm')['ID'] | |
| 272 self.assertEqual(1, len(DoGet(_REMOTE, '/instances/%s/frames' % i))) | |
| 3 | 273 |
| 5 | 274 im = GetImage(_REMOTE, '/instances/%s/preview' % i) |
| 275 self.assertEqual("L", im.mode) | |
| 276 self.assertEqual(512, im.size[0]) | |
| 277 self.assertEqual(358, im.size[1]) | |
| 278 | |
| 279 im = GetImage(_REMOTE, '/instances/%s/image-uint8' % i) | |
| 280 self.assertEqual("L", im.mode) | |
| 281 self.assertEqual(512, im.size[0]) | |
| 282 self.assertEqual(358, im.size[1]) | |
| 283 | |
| 284 im = GetImage(_REMOTE, '/instances/%s/image-uint16' % i) | |
| 285 self.assertEqual(512, im.size[0]) | |
| 286 self.assertEqual(358, im.size[1]) | |
| 287 | |
| 288 im = GetImage(_REMOTE, '/instances/%s/frames/0/preview' % i) | |
| 289 self.assertEqual("L", im.mode) | |
| 290 self.assertEqual(512, im.size[0]) | |
| 291 self.assertEqual(358, im.size[1]) | |
| 292 | |
| 293 im = GetImage(_REMOTE, '/instances/%s/frames/0/image-uint8' % i) | |
| 294 self.assertEqual("L", im.mode) | |
| 295 self.assertEqual(512, im.size[0]) | |
| 296 self.assertEqual(358, im.size[1]) | |
| 297 | |
| 298 im = GetImage(_REMOTE, '/instances/%s/frames/0/image-uint16' % i) | |
| 299 self.assertEqual(512, im.size[0]) | |
| 300 self.assertEqual(358, im.size[1]) | |
| 64 | 301 |
| 302 # This is Little Endian Explicit | |
| 303 self.assertEqual('1.2.840.10008.1.2.1', DoGet(_REMOTE, '/instances/%s/header?simplify' % i)['TransferSyntaxUID']) | |
| 304 | |
| 6 | 305 |
| 306 def test_hierarchy(self): | |
| 307 UploadFolder(_REMOTE, 'Brainix/Epi') | |
| 308 UploadFolder(_REMOTE, 'Brainix/Flair') | |
| 309 UploadFolder(_REMOTE, 'Knee/T1') | |
| 310 UploadFolder(_REMOTE, 'Knee/T2') | |
| 311 | |
| 312 p = DoGet(_REMOTE, '/patients') | |
| 313 s = DoGet(_REMOTE, '/studies') | |
| 314 t = DoGet(_REMOTE, '/series') | |
| 315 self.assertEqual(2, len(p)) | |
| 316 self.assertEqual(2, len(s)) | |
| 317 self.assertEqual(4, len(t)) | |
| 318 self.assertEqual(94, len(DoGet(_REMOTE, '/instances'))) | |
| 319 | |
| 320 brainixPatient = '16738bc3-e47ed42a-43ce044c-a3414a45-cb069bd0' | |
| 321 brainixStudy = '27f7126f-4f66fb14-03f4081b-f9341db2-53925988' | |
| 322 brainixEpi = '2ac1316d-3e432022-62eabff2-c59f5475-9b1ac3f8' | |
| 323 brainixFlair = '1e2c125c-411b8e86-3f4fe68e-a7584dd3-c6da78f0' | |
| 324 | |
| 325 kneePatient = 'ca29faea-b6a0e17f-067743a1-8b778011-a48b2a17' | |
| 326 kneeStudy = '0a9b3153-2512774b-2d9580de-1fc3dcf6-3bd83918' | |
| 327 kneeT1 = '6de73705-c4e65c1b-9d9ea1b5-cabcd8e7-f15e4285' | |
| 328 kneeT2 = 'bbf7a453-0d34251a-03663b55-46bb31b9-ffd74c59' | |
| 329 | |
| 330 self.assertTrue(brainixPatient in p) | |
| 331 self.assertTrue(kneePatient in p) | |
| 332 self.assertTrue(brainixStudy in s) | |
| 333 self.assertTrue(kneeStudy in s) | |
| 334 self.assertTrue(brainixEpi in t) | |
| 335 self.assertTrue(brainixFlair in t) | |
| 336 self.assertTrue(kneeT1 in t) | |
| 337 self.assertTrue(kneeT2 in t) | |
| 338 | |
| 339 self.assertEqual(44, len(DoGet(_REMOTE, '/patients/%s/instances' % brainixPatient))) | |
| 340 self.assertEqual(2, len(DoGet(_REMOTE, '/patients/%s/series' % brainixPatient))) | |
| 341 self.assertEqual(1, len(DoGet(_REMOTE, '/patients/%s/studies' % brainixPatient))) | |
| 342 | |
| 343 self.assertEqual(50, len(DoGet(_REMOTE, '/patients/%s/instances' % kneePatient))) | |
| 344 self.assertEqual(2, len(DoGet(_REMOTE, '/patients/%s/series' % kneePatient))) | |
| 345 self.assertEqual(1, len(DoGet(_REMOTE, '/patients/%s/studies' % kneePatient))) | |
| 346 | |
| 347 self.assertEqual(2, len(DoGet(_REMOTE, '/studies/%s/series' % brainixStudy))) | |
| 348 self.assertEqual(44, len(DoGet(_REMOTE, '/studies/%s/instances' % brainixStudy))) | |
| 349 | |
| 350 self.assertEqual(2, len(DoGet(_REMOTE, '/studies/%s/series' % kneeStudy))) | |
| 351 self.assertEqual(50, len(DoGet(_REMOTE, '/studies/%s/instances' % kneeStudy))) | |
| 352 | |
| 353 self.assertEqual(22, len(DoGet(_REMOTE, '/series/%s/instances' % brainixEpi))) | |
| 354 self.assertEqual(22, len(DoGet(_REMOTE, '/series/%s/instances' % brainixFlair))) | |
| 355 self.assertEqual(24, len(DoGet(_REMOTE, '/series/%s/instances' % kneeT1))) | |
| 356 self.assertEqual(26, len(DoGet(_REMOTE, '/series/%s/instances' % kneeT2))) | |
| 357 | |
| 358 for patient in p: | |
| 359 for study in DoGet(_REMOTE, '/patients/%s/studies' % patient): | |
| 360 self.assertEqual(patient, study['ParentPatient']) | |
| 361 for series in DoGet(_REMOTE, '/studies/%s/series' % study['ID']): | |
| 362 self.assertEqual(study['ID'], series['ParentStudy']) | |
| 211 | 363 self.assertEqual('Unknown', series['Status']) |
| 6 | 364 for instance in DoGet(_REMOTE, '/series/%s/instances' % series['ID']): |
| 365 self.assertEqual(series['ID'], instance['ParentSeries']) | |
| 366 | |
| 367 self.assertEqual(json.dumps(DoGet(_REMOTE, '/instances/%s/attachments/dicom-as-json/data' % instance['ID'])), | |
| 368 json.dumps(DoGet(_REMOTE, '/instances/%s/tags' % instance['ID']))) | |
| 369 | |
| 370 | |
| 371 r = DoDelete(_REMOTE, "/studies/%s" % brainixStudy)['RemainingAncestor'] | |
| 372 self.assertEqual(1, len(DoGet(_REMOTE, '/patients'))) | |
| 373 self.assertEqual(1, len(DoGet(_REMOTE, '/studies'))) | |
| 374 self.assertEqual(2, len(DoGet(_REMOTE, '/series'))) | |
| 375 self.assertEqual(50, len(DoGet(_REMOTE, '/instances'))) | |
| 376 self.assertEqual(None, r) | |
| 377 | |
| 378 r = DoDelete(_REMOTE, "/series/%s" % kneeT2)['RemainingAncestor'] | |
| 379 self.assertEqual(1, len(DoGet(_REMOTE, '/patients'))) | |
| 380 self.assertEqual(1, len(DoGet(_REMOTE, '/studies'))) | |
| 381 self.assertEqual(1, len(DoGet(_REMOTE, '/series'))) | |
| 382 self.assertEqual(24, len(DoGet(_REMOTE, '/instances'))) | |
| 383 self.assertEqual('Study', r['Type']) | |
| 384 self.assertEqual(kneeStudy, r['ID']) | |
| 385 | |
| 386 r = DoDelete(_REMOTE, "/instances/%s" % DoGet(_REMOTE, '/instances')[0])['RemainingAncestor'] | |
| 387 self.assertEqual(1, len(DoGet(_REMOTE, '/patients'))) | |
| 388 self.assertEqual(1, len(DoGet(_REMOTE, '/studies'))) | |
| 389 self.assertEqual(1, len(DoGet(_REMOTE, '/series'))) | |
| 390 self.assertEqual(23, len(DoGet(_REMOTE, '/instances'))) | |
| 391 self.assertEqual('Series', r['Type']) | |
| 392 self.assertEqual(kneeT1, r['ID']) | |
| 393 | |
| 394 r = DoDelete(_REMOTE, "/patients/%s" % kneePatient)['RemainingAncestor'] | |
| 395 self.assertEqual(0, len(DoGet(_REMOTE, '/patients'))) | |
| 396 self.assertEqual(0, len(DoGet(_REMOTE, '/studies'))) | |
| 397 self.assertEqual(0, len(DoGet(_REMOTE, '/series'))) | |
| 398 self.assertEqual(0, len(DoGet(_REMOTE, '/instances'))) | |
| 399 self.assertEqual(None, r) | |
| 400 | |
| 401 DropOrthanc(_REMOTE) | |
| 402 self.assertEqual('0', DoGet(_REMOTE, '/statistics')['TotalDiskSize']) | |
| 403 self.assertEqual('0', DoGet(_REMOTE, '/statistics')['TotalUncompressedSize']) | |
| 7 | 404 |
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405 def test_delete_cascade(self): |
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406 # make sure deleting the last instance of a study deletes the series, study and patient |
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407 |
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408 self.assertEqual(0, len(DoGet(_REMOTE, '/instances'))) # make sure orthanc is empty when starting the test |
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409 a = UploadInstance(_REMOTE, 'DummyCT.dcm')['ID'] |
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410 self.assertEqual(1, len(DoGet(_REMOTE, '/instances'))) |
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411 self.assertEqual(1, len(DoGet(_REMOTE, '/series'))) |
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412 self.assertEqual(1, len(DoGet(_REMOTE, '/studies'))) |
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413 self.assertEqual(1, len(DoGet(_REMOTE, '/patients'))) |
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414 |
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415 DoDelete(_REMOTE, '/instances/%s' % a) |
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416 |
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417 self.assertEqual(0, len(DoGet(_REMOTE, '/instances'))) |
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418 self.assertEqual(0, len(DoGet(_REMOTE, '/series'))) |
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419 self.assertEqual(0, len(DoGet(_REMOTE, '/studies'))) |
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420 self.assertEqual(0, len(DoGet(_REMOTE, '/patients'))) |
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421 |
| 7 | 422 |
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423 def test_multiframe(self): |
| 7 | 424 i = UploadInstance(_REMOTE, 'Multiframe.dcm')['ID'] |
| 425 self.assertEqual(76, len(DoGet(_REMOTE, '/instances/%s/frames' % i))) | |
| 426 | |
| 427 im = GetImage(_REMOTE, '/instances/%s/frames/0/preview' % i) | |
| 428 self.assertEqual("L", im.mode) | |
| 429 self.assertEqual(512, im.size[0]) | |
| 430 self.assertEqual(512, im.size[1]) | |
| 431 | |
| 432 DoGet(_REMOTE, '/instances/%s/frames/0/image-uint8' % i) | |
| 433 DoGet(_REMOTE, '/instances/%s/frames/0/image-uint16' % i) | |
| 434 DoGet(_REMOTE, '/instances/%s/frames/75/preview' % i) | |
| 435 self.assertRaises(Exception, lambda: DoGet(_REMOTE, '/instances/%s/frames/aaa/preview' % i)) | |
| 436 self.assertRaises(Exception, lambda: DoGet(_REMOTE, '/instances/%s/frames/76/preview' % i)) | |
| 437 | |
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438 |
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439 def test_changes(self): |
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440 # Check emptiness |
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441 c = DoGet(_REMOTE, '/changes') |
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442 self.assertEqual(0, len(c['Changes'])) |
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443 #self.assertEqual(0, c['Last']) # Not true anymore for Orthanc >= 1.5.2 |
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444 self.assertTrue(c['Done']) |
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445 c = DoGet(_REMOTE, '/changes?last') |
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446 self.assertEqual(0, len(c['Changes'])) |
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447 #self.assertEqual(0, c['Last']) # Not true anymore for Orthanc >= 1.5.2 |
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448 self.assertTrue(c['Done']) |
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449 |
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450 # Add 1 instance |
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451 i = UploadInstance(_REMOTE, 'Brainix/Flair/IM-0001-0001.dcm')['ID'] |
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452 c = DoGet(_REMOTE, '/changes') |
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453 begin = c['Last'] |
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454 self.assertEqual(4, len(c['Changes'])) |
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455 self.assertTrue(c['Done']) |
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456 self.assertEqual(c['Changes'][-1]['Seq'], c['Last']) |
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457 |
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458 c = DoGet(_REMOTE, '/changes?last') |
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459 self.assertEqual(1, len(c['Changes'])) |
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460 self.assertEqual(begin, c['Last']) |
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461 self.assertTrue(c['Done']) |
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462 c = DoGet(_REMOTE, '/changes?limit=1&since=' + str(begin - 1)) |
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463 self.assertEqual(1, len(c['Changes'])) |
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464 self.assertEqual(begin, c['Last']) |
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465 self.assertTrue(c['Done']) |
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466 c = DoGet(_REMOTE, '/changes?limit=1&since=' + str(begin - 2)) |
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changeset
|
467 self.assertEqual(1, len(c['Changes'])) |
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changeset
|
468 self.assertEqual(begin - 1, c['Last']) |
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changeset
|
469 self.assertFalse(c['Done']) |
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diff
changeset
|
470 c = DoGet(_REMOTE, '/changes?limit=1&since=' + str(begin - 3)) |
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changeset
|
471 self.assertEqual(1, len(c['Changes'])) |
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diff
changeset
|
472 self.assertEqual(begin - 2, c['Last']) |
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changeset
|
473 self.assertFalse(c['Done']) |
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diff
changeset
|
474 |
|
f8d781d1d267
test_changes, test_archive, test_media_archive
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changeset
|
475 UploadFolder(_REMOTE, 'Knee/T1') |
|
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diff
changeset
|
476 UploadFolder(_REMOTE, 'Knee/T2') |
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diff
changeset
|
477 since = begin |
|
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diff
changeset
|
478 countPatients = 0 |
|
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479 countStudies = 0 |
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changeset
|
480 countSeries = 0 |
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diff
changeset
|
481 countInstances = 0 |
|
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diff
changeset
|
482 completed = 0 |
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parents:
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diff
changeset
|
483 while True: |
|
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changeset
|
484 c = DoGet(_REMOTE, '/changes', { 'since' : since, 'limit' : 3 }) |
|
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diff
changeset
|
485 since = c['Last'] |
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changeset
|
486 for i in c['Changes']: |
|
f8d781d1d267
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changeset
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487 if i['ResourceType'] == 'Instance': |
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changeset
|
488 countInstances += 1 |
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changeset
|
489 if i['ResourceType'] == 'Patient': |
|
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changeset
|
490 countPatients += 1 |
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changeset
|
491 if i['ResourceType'] == 'Study': |
|
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test_changes, test_archive, test_media_archive
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changeset
|
492 countStudies += 1 |
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changeset
|
493 if i['ResourceType'] == 'Series': |
|
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test_changes, test_archive, test_media_archive
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changeset
|
494 countSeries += 1 |
|
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diff
changeset
|
495 if i['ChangeType'] == 'NewInstance': |
|
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changeset
|
496 countInstances += 1 |
|
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changeset
|
497 if i['ChangeType'] == 'NewPatient': |
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changeset
|
498 countPatients += 1 |
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changeset
|
499 if i['ChangeType'] == 'NewStudy': |
|
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test_changes, test_archive, test_media_archive
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changeset
|
500 countStudies += 1 |
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changeset
|
501 if i['ChangeType'] == 'NewSeries': |
|
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test_changes, test_archive, test_media_archive
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changeset
|
502 countSeries += 1 |
|
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test_changes, test_archive, test_media_archive
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changeset
|
503 if i['ChangeType'] == 'CompletedSeries': |
|
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test_changes, test_archive, test_media_archive
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parents:
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diff
changeset
|
504 completed += 1 |
|
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test_changes, test_archive, test_media_archive
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diff
changeset
|
505 self.assertTrue('ID' in i) |
|
f8d781d1d267
test_changes, test_archive, test_media_archive
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diff
changeset
|
506 self.assertTrue('Path' in i) |
|
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parents:
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diff
changeset
|
507 self.assertTrue('Seq' in i) |
|
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test_changes, test_archive, test_media_archive
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changeset
|
508 if c['Done']: |
|
f8d781d1d267
test_changes, test_archive, test_media_archive
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
changeset
|
509 break |
|
f8d781d1d267
test_changes, test_archive, test_media_archive
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
7
diff
changeset
|
510 |
|
f8d781d1d267
test_changes, test_archive, test_media_archive
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diff
changeset
|
511 self.assertEqual(2 * 50, countInstances) |
|
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test_changes, test_archive, test_media_archive
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changeset
|
512 self.assertEqual(2 * 1, countPatients) |
|
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changeset
|
513 self.assertEqual(2 * 1, countStudies) |
|
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changeset
|
514 self.assertEqual(2 * 2, countSeries) |
|
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changeset
|
515 self.assertEqual(0, completed) |
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parents:
7
diff
changeset
|
516 |
|
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parents:
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diff
changeset
|
517 |
|
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changeset
|
518 def test_archive(self): |
|
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changeset
|
519 UploadInstance(_REMOTE, 'Knee/T1/IM-0001-0001.dcm') |
|
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test_changes, test_archive, test_media_archive
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diff
changeset
|
520 UploadInstance(_REMOTE, 'Knee/T2/IM-0001-0001.dcm') |
| 192 | 521 knee = 'ca29faea-b6a0e17f-067743a1-8b778011-a48b2a17' |
| 522 | |
| 523 z = GetArchive(_REMOTE, '/patients/%s/archive' % knee) | |
|
8
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changeset
|
524 self.assertEqual(2, len(z.namelist())) |
|
f8d781d1d267
test_changes, test_archive, test_media_archive
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parents:
7
diff
changeset
|
525 |
|
f8d781d1d267
test_changes, test_archive, test_media_archive
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7
diff
changeset
|
526 z = GetArchive(_REMOTE, '/studies/%s/archive' % DoGet(_REMOTE, '/studies')[0]) |
|
f8d781d1d267
test_changes, test_archive, test_media_archive
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diff
changeset
|
527 self.assertEqual(2, len(z.namelist())) |
|
f8d781d1d267
test_changes, test_archive, test_media_archive
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parents:
7
diff
changeset
|
528 |
|
f8d781d1d267
test_changes, test_archive, test_media_archive
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parents:
7
diff
changeset
|
529 z = GetArchive(_REMOTE, '/series/%s/archive' % DoGet(_REMOTE, '/series')[0]) |
|
f8d781d1d267
test_changes, test_archive, test_media_archive
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7
diff
changeset
|
530 self.assertEqual(1, len(z.namelist())) |
|
f8d781d1d267
test_changes, test_archive, test_media_archive
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parents:
7
diff
changeset
|
531 |
|
f8d781d1d267
test_changes, test_archive, test_media_archive
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
7
diff
changeset
|
532 UploadInstance(_REMOTE, 'Brainix/Flair/IM-0001-0001.dcm') |
| 192 | 533 brainix = '16738bc3-e47ed42a-43ce044c-a3414a45-cb069bd0' |
| 534 | |
| 535 z = GetArchive(_REMOTE, '/patients/%s/archive' % knee) | |
|
8
f8d781d1d267
test_changes, test_archive, test_media_archive
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
7
diff
changeset
|
536 self.assertEqual(2, len(z.namelist())) |
| 192 | 537 |
| 538 z = PostArchive(_REMOTE, '/tools/create-archive', { | |
| 539 'Resources' : [ brainix, knee ] | |
| 540 }) | |
| 541 self.assertEqual(3, len(z.namelist())) | |
| 542 | |
|
8
f8d781d1d267
test_changes, test_archive, test_media_archive
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
7
diff
changeset
|
543 |
|
f8d781d1d267
test_changes, test_archive, test_media_archive
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
7
diff
changeset
|
544 def test_media_archive(self): |
|
f8d781d1d267
test_changes, test_archive, test_media_archive
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
7
diff
changeset
|
545 UploadInstance(_REMOTE, 'Knee/T1/IM-0001-0001.dcm') |
|
f8d781d1d267
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parents:
7
diff
changeset
|
546 UploadInstance(_REMOTE, 'Knee/T2/IM-0001-0001.dcm') |
|
f8d781d1d267
test_changes, test_archive, test_media_archive
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
7
diff
changeset
|
547 |
|
f8d781d1d267
test_changes, test_archive, test_media_archive
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
7
diff
changeset
|
548 z = GetArchive(_REMOTE, '/patients/%s/media' % DoGet(_REMOTE, '/patients')[0]) |
|
f8d781d1d267
test_changes, test_archive, test_media_archive
Sebastien Jodogne <s.jodogne@gmail.com>
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7
diff
changeset
|
549 self.assertEqual(3, len(z.namelist())) |
|
f8d781d1d267
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parents:
7
diff
changeset
|
550 self.assertTrue('IMAGES/IM0' in z.namelist()) |
|
f8d781d1d267
test_changes, test_archive, test_media_archive
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
7
diff
changeset
|
551 self.assertTrue('IMAGES/IM1' in z.namelist()) |
|
f8d781d1d267
test_changes, test_archive, test_media_archive
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
7
diff
changeset
|
552 self.assertTrue('DICOMDIR' in z.namelist()) |
|
f8d781d1d267
test_changes, test_archive, test_media_archive
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
7
diff
changeset
|
553 |
|
f8d781d1d267
test_changes, test_archive, test_media_archive
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
7
diff
changeset
|
554 try: |
|
f8d781d1d267
test_changes, test_archive, test_media_archive
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
7
diff
changeset
|
555 os.remove('/tmp/DICOMDIR') |
|
f8d781d1d267
test_changes, test_archive, test_media_archive
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
7
diff
changeset
|
556 except: |
|
f8d781d1d267
test_changes, test_archive, test_media_archive
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
7
diff
changeset
|
557 # The file does not exist |
|
f8d781d1d267
test_changes, test_archive, test_media_archive
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
7
diff
changeset
|
558 pass |
|
f8d781d1d267
test_changes, test_archive, test_media_archive
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
7
diff
changeset
|
559 |
|
f8d781d1d267
test_changes, test_archive, test_media_archive
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
7
diff
changeset
|
560 z.extract('DICOMDIR', '/tmp') |
| 45 | 561 a = subprocess.check_output([ FindExecutable('dciodvfy'), '/tmp/DICOMDIR' ], |
|
8
f8d781d1d267
test_changes, test_archive, test_media_archive
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
7
diff
changeset
|
562 stderr = subprocess.STDOUT).split('\n') |
|
f8d781d1d267
test_changes, test_archive, test_media_archive
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
7
diff
changeset
|
563 self.assertEqual(3, len(a)) |
|
f8d781d1d267
test_changes, test_archive, test_media_archive
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
7
diff
changeset
|
564 self.assertTrue(a[0].startswith('Warning')) |
|
f8d781d1d267
test_changes, test_archive, test_media_archive
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
7
diff
changeset
|
565 self.assertEqual('BasicDirectory', a[1]) |
|
f8d781d1d267
test_changes, test_archive, test_media_archive
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parents:
7
diff
changeset
|
566 self.assertEqual('', a[2]) |
|
f8d781d1d267
test_changes, test_archive, test_media_archive
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
7
diff
changeset
|
567 |
| 45 | 568 a = subprocess.check_output([ FindExecutable('dcentvfy'), '/tmp/DICOMDIR' ], |
|
8
f8d781d1d267
test_changes, test_archive, test_media_archive
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
7
diff
changeset
|
569 stderr = subprocess.STDOUT).split('\n') |
|
f8d781d1d267
test_changes, test_archive, test_media_archive
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
7
diff
changeset
|
570 self.assertEqual(1, len(a)) |
|
f8d781d1d267
test_changes, test_archive, test_media_archive
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
7
diff
changeset
|
571 self.assertEqual('', a[0]) |
|
f8d781d1d267
test_changes, test_archive, test_media_archive
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
7
diff
changeset
|
572 |
| 45 | 573 a = subprocess.check_output([ FindExecutable('dcm2xml'), '/tmp/DICOMDIR' ]) |
|
8
f8d781d1d267
test_changes, test_archive, test_media_archive
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
7
diff
changeset
|
574 self.assertTrue(re.search('1.3.46.670589.11.17521.5.0.3124.2008081908590448738', a) != None) |
|
f8d781d1d267
test_changes, test_archive, test_media_archive
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
7
diff
changeset
|
575 self.assertTrue(re.search('1.3.46.670589.11.17521.5.0.3124.2008081909113806560', a) != None) |
|
f8d781d1d267
test_changes, test_archive, test_media_archive
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
7
diff
changeset
|
576 |
|
f8d781d1d267
test_changes, test_archive, test_media_archive
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
7
diff
changeset
|
577 os.remove('/tmp/DICOMDIR') |
| 10 | 578 |
| 579 | |
| 580 def test_protection(self): | |
| 581 UploadInstance(_REMOTE, 'Knee/T1/IM-0001-0001.dcm') | |
| 582 UploadInstance(_REMOTE, 'Brainix/Flair/IM-0001-0001.dcm') | |
| 583 self.assertEqual(2, len(DoGet(_REMOTE, '/patients'))) | |
| 584 a = DoGet(_REMOTE, '/patients')[0] | |
| 585 b = DoGet(_REMOTE, '/patients')[1] | |
| 586 self.assertEqual(0, DoGet(_REMOTE, '/patients/%s/protected' % a)) | |
| 587 DoPut(_REMOTE, '/patients/%s/protected' % a, '0', 'text/plain') | |
| 588 self.assertEqual(0, DoGet(_REMOTE, '/patients/%s/protected' % a)) | |
| 589 DoPut(_REMOTE, '/patients/%s/protected' % a, '1', 'text/plain') | |
| 590 self.assertEqual(1, DoGet(_REMOTE, '/patients/%s/protected' % a)) | |
| 591 DoPut(_REMOTE, '/patients/%s/protected' % a, '0', 'text/plain') | |
| 592 self.assertEqual(0, DoGet(_REMOTE, '/patients/%s/protected' % a)) | |
| 593 | |
| 594 | |
| 12 | 595 def test_raw_tags(self): |
| 10 | 596 i = UploadInstance(_REMOTE, 'PrivateTags.dcm')['ID'] |
| 597 | |
| 598 dicom = DoGet(_REMOTE, '/instances/%s/file' % i) | |
| 599 self.assertEqual('1a7c56cb02d6e742cc9c856a8ac182e3', ComputeMD5(dicom)) | |
| 600 | |
| 601 s = '/instances/%s/content/' % i | |
| 602 | |
| 603 self.assertEqual('LOGIQBOOK', DoGet(_REMOTE, s + '0008-1010').strip()) | |
| 604 self.assertRaises(Exception, lambda: DoGet(_REMOTE, s + '0008-1011')) | |
| 605 | |
| 606 self.assertEqual('Abdomen', DoGet(_REMOTE, s + '7fe1-1001/0/7fe1-1008/0/7fe1-1057').strip()) | |
| 607 self.assertEqual('cla_3c', DoGet(_REMOTE, s + '7fe1-1001/0/7fe1-1008/8/7fe1-1057').strip()) | |
| 608 | |
| 609 UploadInstance(_REMOTE, 'Brainix/Epi/IM-0001-0001.dcm') | |
| 610 UploadInstance(_REMOTE, 'Brainix/Flair/IM-0001-0001.dcm') | |
| 611 UploadInstance(_REMOTE, 'Knee/T1/IM-0001-0001.dcm') | |
| 612 UploadInstance(_REMOTE, 'Knee/T2/IM-0001-0001.dcm') | |
| 613 | |
| 614 for i in DoGet(_REMOTE, '/instances'): | |
| 615 aid = DoGet(_REMOTE, '/instances/%s' % i)['MainDicomTags']['SOPInstanceUID'] | |
| 616 self.assertEqual(aid, DoGet(_REMOTE, '/instances/%s/content/0008-0018' % i).replace(chr(0), '')) | |
| 617 | |
| 618 | |
| 619 def test_raw_tags_mdn(self): | |
| 620 # Bug reported by Cyril Paulus | |
| 621 i = UploadInstance(_REMOTE, 'PrivateMDNTags.dcm')['ID'] | |
| 622 self.assertAlmostEqual(0.000027, DoGet(_REMOTE, '/instances/%s/content/7053-1000' % i)) | |
| 623 | |
| 624 | |
| 625 def test_modify_instance(self): | |
| 626 i = UploadInstance(_REMOTE, 'PrivateTags.dcm')['ID'] | |
| 627 modified = DoPost(_REMOTE, '/instances/%s/modify' % i, | |
| 628 json.dumps({ | |
| 629 "Replace" : { | |
| 630 "PatientName" : "hello", | |
| 631 #"PatientID" : "world" | |
| 632 }, | |
| 633 "Remove" : [ "StationName" ], | |
|
118
a954c535fef6
test_bitbucket_issue_55
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
117
diff
changeset
|
634 "RemovePrivateTags" : True |
| 10 | 635 }), |
| 636 'application/json') | |
| 637 j = DoPost(_REMOTE, '/instances', modified, 'application/dicom')['ID'] | |
| 638 | |
| 639 self.assertNotEqual('hello', DoGet(_REMOTE, '/instances/%s/content/0010-0010' % i).strip()) | |
| 640 #self.assertNotEqual('world', DoGet(_REMOTE, '/instances/%s/content/0010-0020' % i).strip()) | |
| 83 | 641 self.assertEqual('LOGIQBOOK', DoGet(_REMOTE, '/instances/%s/content/0008-1010' % i).strip()) |
| 10 | 642 DoGet(_REMOTE, '/instances/%s/content/6003-1010' % i) # Some private tag |
| 643 | |
| 644 self.assertEqual('hello', DoGet(_REMOTE, '/instances/%s/content/0010-0010' % j).strip()) | |
| 645 #self.assertEqual('world', DoGet(_REMOTE, '/instances/%s/content/0010-0020' % j).strip()) | |
| 646 self.assertRaises(Exception, lambda: DoGet(_REMOTE, '/instances/%s/content/0008-1010' % j)) | |
| 647 self.assertRaises(Exception, lambda: DoGet(_REMOTE, '/instances/%s/content/6003-1010' % j)) | |
| 648 | |
| 649 | |
| 650 def test_modify_series(self): | |
| 651 # Upload 4 images from the same series | |
| 652 for i in range(4): | |
| 653 UploadInstance(_REMOTE, 'Brainix/Epi/IM-0001-000%d.dcm' % (i + 1)) | |
| 654 | |
| 655 origSeries = DoGet(_REMOTE, '/series')[0] | |
| 656 newSeries = DoPost(_REMOTE, '/series/%s/modify' % origSeries, | |
| 657 '{"Replace":{"PatientName":"Jodogne"}}', | |
| 658 'application/json')['ID'] | |
| 659 | |
| 660 self.assertEqual(origSeries, DoGet(_REMOTE, '/series/%s' % newSeries)['ModifiedFrom']) | |
| 661 instances = DoGet(_REMOTE, '/series/%s' % newSeries)['Instances'] | |
| 662 self.assertEqual(4, len(instances)) | |
| 663 for i in instances: | |
| 664 j = DoGet(_REMOTE, '/instances/%s' % i)['ModifiedFrom'] | |
| 665 self.assertEqual(newSeries, DoGet(_REMOTE, '/instances/%s' % i)['ParentSeries']) | |
| 666 self.assertEqual(origSeries, DoGet(_REMOTE, '/instances/%s' % j)['ParentSeries']) | |
| 667 | |
| 668 self.assertEqual('Jodogne', DoGet(_REMOTE, '/instances/%s/content/0010-0010' % i).strip()) | |
| 669 self.assertNotEqual('Jodogne', DoGet(_REMOTE, '/instances/%s/content/0010-0010' % j).strip()) | |
| 670 | |
| 671 | |
| 672 def test_modify_study(self): | |
| 673 # Upload 4 images from the 2 series of the same study | |
| 674 for i in range(4): | |
| 675 UploadInstance(_REMOTE, 'Brainix/Flair/IM-0001-000%d.dcm' % (i + 1)) | |
| 676 UploadInstance(_REMOTE, 'Brainix/Epi/IM-0001-000%d.dcm' % (i + 1)) | |
| 677 | |
| 678 origStudy = DoGet(_REMOTE, '/studies')[0] | |
| 679 newStudy = DoPost(_REMOTE, '/studies/%s/modify' % origStudy, | |
| 680 '{"Replace":{"PatientName":"Jodogne"}}', | |
| 681 'application/json')['ID'] | |
| 682 | |
| 683 self.assertEqual(origStudy, DoGet(_REMOTE, '/studies/%s' % newStudy)['ModifiedFrom']) | |
| 684 series = DoGet(_REMOTE, '/studies/%s' % newStudy)['Series'] | |
| 685 self.assertEqual(2, len(series)) | |
| 686 for s in series: | |
| 687 ss = DoGet(_REMOTE, '/series/%s' % s)['ModifiedFrom'] | |
| 688 self.assertEqual(newStudy, DoGet(_REMOTE, '/series/%s' % s)['ParentStudy']) | |
| 689 self.assertEqual(origStudy, DoGet(_REMOTE, '/series/%s' % ss)['ParentStudy']) | |
| 690 | |
| 691 instances = DoGet(_REMOTE, '/series/%s' % s)['Instances'] | |
| 692 for i in instances: | |
| 693 j = DoGet(_REMOTE, '/instances/%s' % i)['ModifiedFrom'] | |
| 694 self.assertEqual(s, DoGet(_REMOTE, '/instances/%s' % i)['ParentSeries']) | |
| 695 self.assertEqual(ss, DoGet(_REMOTE, '/instances/%s' % j)['ParentSeries']) | |
| 696 | |
| 697 self.assertEqual('Jodogne', DoGet(_REMOTE, '/instances/%s/content/0010-0010' % i).strip()) | |
| 698 self.assertNotEqual('Jodogne', DoGet(_REMOTE, '/instances/%s/content/0010-0010' % j).strip()) | |
| 699 | |
| 700 | |
| 701 def test_anonymize_series(self): | |
| 702 # Upload 4 images from the same series | |
| 703 for i in range(4): | |
| 704 UploadInstance(_REMOTE, 'Brainix/Epi/IM-0001-000%d.dcm' % (i + 1)) | |
| 705 | |
| 706 origSeries = DoGet(_REMOTE, '/series')[0] | |
| 707 newSeries = DoPost(_REMOTE, '/series/%s/anonymize' % origSeries, | |
| 708 '{}', | |
| 709 'application/json')['ID'] | |
| 710 | |
| 711 self.assertEqual(origSeries, DoGet(_REMOTE, '/series/%s' % newSeries)['AnonymizedFrom']) | |
| 712 instances = DoGet(_REMOTE, '/series/%s' % newSeries)['Instances'] | |
| 713 self.assertEqual(4, len(instances)) | |
| 714 for i in instances: | |
| 715 j = DoGet(_REMOTE, '/instances/%s' % i)['AnonymizedFrom'] | |
| 716 self.assertEqual(newSeries, DoGet(_REMOTE, '/instances/%s' % i)['ParentSeries']) | |
| 717 self.assertEqual(origSeries, DoGet(_REMOTE, '/instances/%s' % j)['ParentSeries']) | |
| 718 | |
| 719 DoGet(_REMOTE, '/instances/%s/content/0008-1010' % j) | |
| 720 self.assertRaises(Exception, lambda: DoGet(_REMOTE, '/instances/%s/content/0008-1010' % i)) | |
| 721 | |
| 722 | |
| 723 def test_anonymize_study(self): | |
| 724 # Upload 4 images from the 2 series of the same study | |
| 725 for i in range(4): | |
| 726 UploadInstance(_REMOTE, 'Brainix/Flair/IM-0001-000%d.dcm' % (i + 1)) | |
| 727 UploadInstance(_REMOTE, 'Brainix/Epi/IM-0001-000%d.dcm' % (i + 1)) | |
| 728 | |
| 729 origStudy = DoGet(_REMOTE, '/studies')[0] | |
| 730 newStudy = DoPost(_REMOTE,'/studies/%s/anonymize' % origStudy, | |
| 731 '{"Replace":{"PatientName":"Jodogne"}}', | |
| 732 'application/json')['ID'] | |
| 733 | |
| 734 self.assertEqual(origStudy, DoGet(_REMOTE, '/studies/%s' % newStudy)['AnonymizedFrom']) | |
| 735 series = DoGet(_REMOTE, '/studies/%s' % newStudy)['Series'] | |
| 736 self.assertEqual(2, len(series)) | |
| 737 for s in series: | |
| 738 ss = DoGet(_REMOTE, '/series/%s' % s)['AnonymizedFrom'] | |
| 739 self.assertEqual(newStudy, DoGet(_REMOTE, '/series/%s' % s)['ParentStudy']) | |
| 740 self.assertEqual(origStudy, DoGet(_REMOTE, '/series/%s' % ss)['ParentStudy']) | |
| 741 | |
| 742 instances = DoGet(_REMOTE, '/series/%s' % s)['Instances'] | |
| 743 for i in instances: | |
| 744 j = DoGet(_REMOTE, '/instances/%s' % i)['AnonymizedFrom'] | |
| 745 self.assertEqual(s, DoGet(_REMOTE, '/instances/%s' % i)['ParentSeries']) | |
| 746 self.assertEqual(ss, DoGet(_REMOTE, '/instances/%s' % j)['ParentSeries']) | |
| 747 | |
| 748 self.assertEqual('Jodogne', DoGet(_REMOTE, '/instances/%s/content/0010-0010' % i).strip()) | |
| 749 self.assertNotEqual('Jodogne', DoGet(_REMOTE, '/instances/%s/content/0010-0010' % j).strip()) | |
| 11 | 750 |
| 751 | |
| 752 | |
| 753 def test_storescu(self): | |
| 754 # Check emptiness | |
| 755 e = DoGet(_REMOTE, '/exports') | |
| 756 self.assertEqual(0, len(e['Exports'])) | |
| 757 self.assertEqual(0, e['Last']) | |
| 758 self.assertTrue(e['Done']) | |
| 759 e = DoGet(_REMOTE, '/exports?last') | |
| 760 self.assertEqual(0, len(e['Exports'])) | |
| 761 self.assertEqual(0, e['Last']) | |
| 762 self.assertTrue(e['Done']) | |
| 763 | |
| 764 # Add 1 instance | |
| 765 i = UploadInstance(_REMOTE, 'DummyCT.dcm')['ID'] | |
| 766 self.assertEqual(0, len(DoGet(_LOCAL, '/patients'))) | |
| 767 | |
| 768 # Export the instance | |
| 769 j = DoPost(_REMOTE, '/modalities/orthanctest/store', str(i), 'text/plain') # instance | |
| 770 self.assertEqual(1, len(DoGet(_LOCAL, '/patients'))) | |
| 771 self.assertEqual(1, len(DoGet(_LOCAL, '/studies'))) | |
| 772 self.assertEqual(1, len(DoGet(_LOCAL, '/series'))) | |
| 773 self.assertEqual(1, len(DoGet(_LOCAL, '/instances'))) | |
| 774 | |
| 775 e = DoGet(_REMOTE, '/exports') | |
| 776 self.assertEqual(1, len(e['Exports'])) | |
| 777 self.assertTrue(e['Done']) | |
| 778 self.assertEqual(e['Exports'][-1]['Seq'], e['Last']) | |
| 779 e = DoGet(_REMOTE, '/exports?limit=1') | |
| 780 self.assertEqual(1, len(e['Exports'])) | |
| 781 self.assertTrue(e['Done']) | |
| 782 self.assertEqual(e['Exports'][-1]['Seq'], e['Last']) | |
| 783 e = DoGet(_REMOTE, '/exports?last') | |
| 784 self.assertEqual(1, len(e['Exports'])) | |
| 785 self.assertTrue(e['Done']) | |
| 786 self.assertEqual(e['Exports'][-1]['Seq'], e['Last']) | |
| 787 seqInstance = e['Last'] | |
| 788 | |
| 789 # Export the series | |
| 790 j = DoPost(_REMOTE, '/modalities/orthanctest/store', 'f2635388-f01d497a-15f7c06b-ad7dba06-c4c599fe', 'text/plain') | |
| 791 | |
| 792 e = DoGet(_REMOTE, '/exports') | |
| 793 self.assertEqual(2, len(e['Exports'])) | |
| 794 self.assertTrue(e['Done']) | |
| 795 self.assertEqual(e['Exports'][-1]['Seq'], e['Last']) | |
| 796 seqSeries = e['Last'] | |
| 797 self.assertNotEqual(seqInstance, seqSeries) | |
| 798 e = DoGet(_REMOTE, '/exports?limit=1&since=0') | |
| 799 self.assertEqual(1, len(e['Exports'])) | |
| 800 self.assertFalse(e['Done']) | |
| 801 self.assertEqual(e['Exports'][-1]['Seq'], seqInstance) | |
| 802 e = DoGet(_REMOTE, '/exports?limit=1&since=' + str(seqInstance)) | |
| 803 self.assertEqual(1, len(e['Exports'])) | |
| 804 self.assertTrue(e['Done']) | |
| 805 self.assertEqual(e['Exports'][-1]['Seq'], seqSeries) | |
| 806 e = DoGet(_REMOTE, '/exports?last') | |
| 807 self.assertEqual(1, len(e['Exports'])) | |
| 808 self.assertTrue(e['Done']) | |
| 809 self.assertEqual(e['Exports'][-1]['Seq'], seqSeries) | |
| 810 | |
| 811 # Export the study | |
| 812 j = DoPost(_REMOTE, '/modalities/orthanctest/store', 'b9c08539-26f93bde-c81ab0d7-bffaf2cb-a4d0bdd0', 'text/plain') | |
| 813 seqStudy = DoGet(_REMOTE, '/exports')['Last'] | |
| 814 | |
| 815 # Export the patient | |
| 816 j = DoPost(_REMOTE, '/modalities/orthanctest/store', '6816cb19-844d5aee-85245eba-28e841e6-2414fae2', 'text/plain') | |
| 817 self.assertEqual(1, len(DoGet(_LOCAL, '/patients'))) | |
| 818 self.assertEqual(1, len(DoGet(_LOCAL, '/studies'))) | |
| 819 self.assertEqual(1, len(DoGet(_LOCAL, '/series'))) | |
| 820 self.assertEqual(1, len(DoGet(_LOCAL, '/instances'))) | |
| 821 | |
| 822 e = DoGet(_REMOTE, '/exports') | |
| 823 self.assertEqual(4, len(e['Exports'])) | |
| 824 self.assertTrue(e['Done']) | |
| 825 self.assertEqual(e['Exports'][-1]['Seq'], e['Last']) | |
| 826 seqPatient = e['Last'] | |
| 827 self.assertNotEqual(seqInstance, seqSeries) | |
| 828 self.assertNotEqual(seqSeries, seqStudy) | |
| 829 self.assertNotEqual(seqStudy, seqPatient) | |
| 830 self.assertTrue(seqInstance < seqSeries) | |
| 831 self.assertTrue(seqSeries < seqStudy) | |
| 832 self.assertTrue(seqStudy < seqPatient) | |
| 833 e = DoGet(_REMOTE, '/exports?limit=1&since=0') | |
| 834 self.assertEqual(1, len(e['Exports'])) | |
| 835 self.assertFalse(e['Done']) | |
| 836 self.assertEqual(e['Exports'][-1]['Seq'], seqInstance) | |
| 837 e = DoGet(_REMOTE, '/exports?limit=1&since=' + str(seqInstance)) | |
| 838 self.assertEqual(1, len(e['Exports'])) | |
| 839 self.assertFalse(e['Done']) | |
| 840 self.assertEqual(e['Exports'][-1]['Seq'], seqSeries) | |
| 841 e = DoGet(_REMOTE, '/exports?limit=1&since=' + str(seqSeries)) | |
| 842 self.assertEqual(1, len(e['Exports'])) | |
| 843 self.assertFalse(e['Done']) | |
| 844 self.assertEqual(e['Exports'][-1]['Seq'], seqStudy) | |
| 845 e = DoGet(_REMOTE, '/exports?limit=1&since=' + str(seqStudy)) | |
| 846 self.assertEqual(1, len(e['Exports'])) | |
| 847 self.assertTrue(e['Done']) | |
| 848 self.assertEqual(e['Exports'][-1]['Seq'], seqPatient) | |
| 849 e = DoGet(_REMOTE, '/exports?last') | |
| 850 self.assertEqual(1, len(e['Exports'])) | |
| 851 self.assertTrue(e['Done']) | |
| 852 self.assertEqual(e['Exports'][-1]['Seq'], seqPatient) | |
| 853 | |
| 854 | |
| 855 # Check the content of the logged information | |
| 856 e = DoGet(_REMOTE, '/exports')['Exports'] | |
| 857 | |
| 858 if 'PatientID' in e[0]: | |
| 859 # Since Orthanc 0.8.6 | |
| 860 patient = 'PatientID' | |
| 861 study = 'StudyInstanceUID' | |
| 862 series = 'SeriesInstanceUID' | |
| 863 instance = 'SOPInstanceUID' | |
| 864 else: | |
| 865 # Up to Orthanc 0.8.5 | |
| 866 patient = 'PatientId' | |
| 867 study = 'StudyInstanceUid' | |
| 868 series = 'SeriesInstanceUid' | |
| 869 instance = 'SopInstanceUid' | |
| 870 | |
| 871 for k in range(4): | |
| 872 self.assertTrue('Date' in e[k]) | |
| 873 self.assertTrue('Seq' in e[k]) | |
| 874 self.assertEqual('orthanctest', e[k]['RemoteModality']) | |
| 875 | |
| 876 self.assertEqual(10, len(e[0])) | |
| 877 self.assertEqual('Instance', e[0]['ResourceType']) | |
| 878 self.assertEqual('66a662ce-7430e543-bad44d47-0dc5a943-ec7a538d', e[0]['ID']) | |
| 879 self.assertEqual('/instances/66a662ce-7430e543-bad44d47-0dc5a943-ec7a538d', e[0]['Path']) | |
| 880 self.assertEqual('1.2.840.113619.2.176.2025.1499492.7040.1171286242.109', e[0][instance]) | |
| 881 self.assertEqual('1.2.840.113619.2.176.2025.1499492.7391.1171285944.394', e[0][series]) | |
| 882 self.assertEqual('1.2.840.113619.2.176.2025.1499492.7391.1171285944.390', e[0][study]) | |
| 883 self.assertEqual('ozp00SjY2xG', e[0][patient]) | |
| 884 | |
| 885 self.assertEqual(9, len(e[1])) | |
| 886 self.assertEqual('Series', e[1]['ResourceType']) | |
| 887 self.assertEqual('f2635388-f01d497a-15f7c06b-ad7dba06-c4c599fe', e[1]['ID']) | |
| 888 self.assertEqual('/series/f2635388-f01d497a-15f7c06b-ad7dba06-c4c599fe', e[1]['Path']) | |
| 889 self.assertEqual('1.2.840.113619.2.176.2025.1499492.7391.1171285944.394', e[1][series]) | |
| 890 self.assertEqual('1.2.840.113619.2.176.2025.1499492.7391.1171285944.390', e[1][study]) | |
| 891 self.assertEqual('ozp00SjY2xG', e[1][patient]) | |
| 892 | |
| 893 self.assertEqual(8, len(e[2])) | |
| 894 self.assertEqual('Study', e[2]['ResourceType']) | |
| 895 self.assertEqual('b9c08539-26f93bde-c81ab0d7-bffaf2cb-a4d0bdd0', e[2]['ID']) | |
| 896 self.assertEqual('/studies/b9c08539-26f93bde-c81ab0d7-bffaf2cb-a4d0bdd0', e[2]['Path']) | |
| 897 self.assertEqual('1.2.840.113619.2.176.2025.1499492.7391.1171285944.390', e[2][study]) | |
| 898 self.assertEqual('ozp00SjY2xG', e[2][patient]) | |
| 899 | |
| 900 self.assertEqual(7, len(e[3])) | |
| 901 self.assertEqual('Patient', e[3]['ResourceType']) | |
| 902 self.assertEqual('6816cb19-844d5aee-85245eba-28e841e6-2414fae2', e[3]['ID']) | |
| 903 self.assertEqual('/patients/6816cb19-844d5aee-85245eba-28e841e6-2414fae2', e[3]['Path']) | |
| 904 self.assertEqual('ozp00SjY2xG', e[3][patient]) | |
| 905 | |
| 906 DropOrthanc(_REMOTE) | |
| 907 self.assertEqual(0, len(DoGet(_REMOTE, '/exports')['Exports'])) | |
| 908 | |
| 909 | |
| 910 def test_store_peer(self): | |
| 911 self.assertEqual(0, len(DoGet(_LOCAL, '/exports')['Exports'])) | |
| 912 self.assertEqual(0, len(DoGet(_REMOTE, '/exports')['Exports'])) | |
| 913 | |
| 914 i = UploadInstance(_REMOTE, 'DummyCT.dcm')['ID'] | |
| 915 self.assertEqual(0, len(DoGet(_LOCAL, '/patients'))) | |
| 916 self.assertEqual(1, len(DoGet(_REMOTE, '/patients'))) | |
| 917 | |
| 918 j = DoPost(_REMOTE, '/peers/peer/store', str(i), 'text/plain') | |
| 919 self.assertEqual(1, len(DoGet(_LOCAL, '/patients'))) | |
| 920 self.assertEqual(1, len(DoGet(_REMOTE, '/patients'))) | |
| 921 | |
| 922 self.assertEqual(1, len(DoGet(_REMOTE, '/exports')['Exports'])) | |
| 923 | |
| 924 DropOrthanc(_REMOTE) | |
| 925 self.assertEqual(0, len(DoGet(_REMOTE, '/exports')['Exports'])) | |
| 926 | |
| 927 | |
| 928 def test_bulk_storescu(self): | |
| 929 self.assertEqual(0, len(DoGet(_LOCAL, '/patients'))) | |
| 930 | |
| 931 a = UploadInstance(_REMOTE, 'Knee/T1/IM-0001-0001.dcm') | |
| 932 b = UploadInstance(_REMOTE, 'Knee/T2/IM-0001-0001.dcm') | |
| 933 | |
| 934 j = DoPost(_REMOTE, '/modalities/orthanctest/store', [ a['ID'], b['ID'] ], 'application/json') | |
| 935 self.assertEqual(2, len(DoGet(_LOCAL, '/instances'))) | |
| 936 | |
| 937 DropOrthanc(_LOCAL) | |
| 938 | |
| 939 # Send using patient's UUID | |
| 940 self.assertEqual(0, len(DoGet(_LOCAL, '/instances'))) | |
| 941 j = DoPost(_REMOTE, '/modalities/orthanctest/store', | |
| 942 [ 'ca29faea-b6a0e17f-067743a1-8b778011-a48b2a17' ], 'application/json') | |
| 943 self.assertEqual(2, len(DoGet(_LOCAL, '/instances'))) | |
| 944 | |
| 945 | |
| 946 def test_color(self): | |
| 947 i = UploadInstance(_REMOTE, 'ColorTestMalaterre.dcm')['ID'] | |
| 948 im = GetImage(_REMOTE, '/instances/%s/preview' % i) | |
| 949 self.assertEqual("RGB", im.mode) | |
| 950 self.assertEqual(41, im.size[0]) | |
| 951 self.assertEqual(41, im.size[1]) | |
| 952 | |
| 953 # http://effbot.org/zone/pil-comparing-images.htm | |
| 13 | 954 truth = Image.open(GetDatabasePath('ColorTestMalaterre.png')) |
| 11 | 955 self.assertTrue(ImageChops.difference(im, truth).getbbox() is None) |
| 956 | |
| 957 | |
| 12 | 958 def test_faking_ruby_put(self): |
| 959 UploadInstance(_REMOTE, 'Knee/T1/IM-0001-0001.dcm') | |
| 960 UploadInstance(_REMOTE, 'Brainix/Flair/IM-0001-0001.dcm') | |
| 961 self.assertEqual(2, len(DoGet(_REMOTE, '/patients'))) | |
| 962 a = DoGet(_REMOTE, '/patients')[0] | |
| 963 b = DoGet(_REMOTE, '/patients')[1] | |
| 964 self.assertEqual(0, DoGet(_REMOTE, '/patients/%s/protected' % a)) | |
| 965 DoGet(_REMOTE, '/patients/%s/protected' % a, data = { '_method' : 'PUT' }, body = '0') | |
| 966 self.assertEqual(0, DoGet(_REMOTE, '/patients/%s/protected' % a)) | |
| 967 DoGet(_REMOTE, '/patients/%s/protected' % a, data = { '_method' : 'PUT' }, body = '1') | |
| 968 self.assertEqual(1, DoGet(_REMOTE, '/patients/%s/protected' % a)) | |
| 969 DoGet(_REMOTE, '/patients/%s/protected' % a, data = { '_method' : 'PUT' }, body = '0') | |
| 970 self.assertEqual(0, DoGet(_REMOTE, '/patients/%s/protected' % a)) | |
| 971 | |
| 972 | |
| 973 def test_faking_ruby_delete(self): | |
| 974 UploadInstance(_REMOTE, 'Knee/T1/IM-0001-0001.dcm') | |
| 975 UploadInstance(_REMOTE, 'Brainix/Flair/IM-0001-0001.dcm') | |
| 976 self.assertEqual(2, len(DoGet(_REMOTE, '/patients'))) | |
| 977 a = DoGet(_REMOTE, '/patients')[0] | |
| 978 b = DoGet(_REMOTE, '/patients')[1] | |
| 979 DoGet(_REMOTE, '/patients/%s' % a, data = { '_method' : 'DELETE' }) | |
| 980 self.assertEqual(1, len(DoGet(_REMOTE, '/patients'))) | |
| 981 DoGet(_REMOTE, '/patients/%s' % b, data = { '_method' : 'DELETE' }) | |
| 982 self.assertEqual(0, len(DoGet(_REMOTE, '/patients'))) | |
| 983 | |
| 984 | |
| 985 def test_faking_google_put(self): | |
| 986 UploadInstance(_REMOTE, 'Knee/T1/IM-0001-0001.dcm') | |
| 987 UploadInstance(_REMOTE, 'Brainix/Flair/IM-0001-0001.dcm') | |
| 988 self.assertEqual(2, len(DoGet(_REMOTE, '/patients'))) | |
| 989 a = DoGet(_REMOTE, '/patients')[0] | |
| 990 b = DoGet(_REMOTE, '/patients')[1] | |
| 991 self.assertEqual(0, DoGet(_REMOTE, '/patients/%s/protected' % a)) | |
| 992 DoPost(_REMOTE, '/patients/%s/protected' % a, headers = { 'X-HTTP-Method-Override' : 'PUT' }, data = '0') | |
| 993 self.assertEqual(0, DoGet(_REMOTE, '/patients/%s/protected' % a)) | |
| 994 DoPost(_REMOTE, '/patients/%s/protected' % a, headers = { 'X-HTTP-Method-Override' : 'PUT' }, data = '1') | |
| 995 self.assertEqual(1, DoGet(_REMOTE, '/patients/%s/protected' % a)) | |
| 996 DoPost(_REMOTE, '/patients/%s/protected' % a, headers = { 'X-HTTP-Method-Override' : 'PUT' }, data = '0') | |
| 997 self.assertEqual(0, DoGet(_REMOTE, '/patients/%s/protected' % a)) | |
| 998 | |
| 999 | |
| 1000 def test_faking_google_delete(self): | |
| 1001 UploadInstance(_REMOTE, 'Knee/T1/IM-0001-0001.dcm') | |
| 1002 UploadInstance(_REMOTE, 'Brainix/Flair/IM-0001-0001.dcm') | |
| 1003 self.assertEqual(2, len(DoGet(_REMOTE, '/patients'))) | |
| 1004 a = DoGet(_REMOTE, '/patients')[0] | |
| 1005 b = DoGet(_REMOTE, '/patients')[1] | |
| 1006 DoPost(_REMOTE, '/patients/%s' % a, headers = { 'X-HTTP-Method-Override' : 'DELETE' }) | |
| 1007 self.assertEqual(1, len(DoGet(_REMOTE, '/patients'))) | |
| 1008 DoPost(_REMOTE, '/patients/%s' % b, headers = { 'X-HTTP-Method-Override' : 'DELETE' }) | |
| 1009 self.assertEqual(0, len(DoGet(_REMOTE, '/patients'))) | |
| 1010 | |
| 1011 | |
| 1012 def test_lua(self): | |
| 1013 self.assertEqual(42, DoPost(_REMOTE, '/tools/execute-script', 'print(42)')) | |
| 1014 self.assertTrue(IsDefinedInLua(_REMOTE, 'PrintRecursive')) | |
| 1015 self.assertFalse(IsDefinedInLua(_REMOTE, 'HelloWorld')) | |
| 1016 | |
| 1017 | |
| 1018 def test_metadata(self): | |
| 1019 UploadInstance(_REMOTE, 'Knee/T1/IM-0001-0001.dcm') | |
| 1020 p = DoGet(_REMOTE, '/patients')[0] | |
| 1021 i = DoGet(_REMOTE, '/instances')[0] | |
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1022 series = DoGet(_REMOTE, '/series')[0] |
| 12 | 1023 |
| 1024 m = DoGet(_REMOTE, '/patients/%s/metadata' % p) | |
| 1025 self.assertEqual(1, len(m)) | |
| 1026 self.assertEqual('LastUpdate', m[0]) | |
| 1027 | |
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1028 # The lines below failed on Orthanc <= 1.8.2 |
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1029 self.assertRaises(Exception, lambda: DoGet(_REMOTE, '/studies/%s/metadata' % p)) |
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1030 self.assertRaises(Exception, lambda: DoGet(_REMOTE, '/series/%s/metadata' % p)) |
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1031 self.assertRaises(Exception, lambda: DoGet(_REMOTE, '/instances/%s/metadata' % p)) |
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1032 |
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1033 m = DoGet(_REMOTE, '/studies/%s/metadata' % DoGet(_REMOTE, '/studies')[0]) |
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1034 self.assertEqual(1, len(m)) |
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1035 self.assertEqual('LastUpdate', m[0]) |
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1036 |
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1037 m = DoGet(_REMOTE, '/series/%s/metadata' % series) |
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1038 self.assertEqual(2, len(m)) |
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1039 self.assertTrue('LastUpdate' in m) |
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1040 |
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1041 # New in Orthanc 1.9.0 |
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1042 self.assertTrue('RemoteAET' in m) |
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1043 self.assertEqual(DoGet(_REMOTE, '/series/%s/metadata/RemoteAET' % series), '') # None, received by REST API |
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1044 |
| 12 | 1045 m = DoGet(_REMOTE, '/instances/%s/metadata' % i) |
| 145 | 1046 self.assertEqual(8, len(m)) |
| 12 | 1047 self.assertTrue('IndexInSeries' in m) |
| 1048 self.assertTrue('ReceptionDate' in m) | |
| 1049 self.assertTrue('RemoteAET' in m) | |
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1050 self.assertTrue('Origin' in m) |
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1051 self.assertTrue('TransferSyntax' in m) |
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1052 self.assertTrue('SopClassUid' in m) |
| 145 | 1053 self.assertTrue('RemoteIP' in m) |
| 1054 self.assertTrue('HttpUsername' in m) | |
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1055 self.assertEqual(DoGet(_REMOTE, '/instances/%s/metadata/IndexInSeries' % i), 1) |
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1056 self.assertEqual(DoGet(_REMOTE, '/instances/%s/metadata/Origin' % i), 'RestApi') |
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1057 self.assertEqual(DoGet(_REMOTE, '/instances/%s/metadata/RemoteAET' % i), '') # None, received by REST API |
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1058 self.assertEqual(DoGet(_REMOTE, '/instances/%s/metadata/TransferSyntax' % i), '1.2.840.10008.1.2.4.91') # JPEG2k |
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1059 self.assertEqual(DoGet(_REMOTE, '/instances/%s/metadata/SopClassUid' % i), '1.2.840.10008.5.1.4.1.1.4') |
| 12 | 1060 |
| 1061 # Play with custom metadata | |
| 1062 DoPut(_REMOTE, '/patients/%s/metadata/5555' % p, 'coucou') | |
| 1063 m = DoGet(_REMOTE, '/patients/%s/metadata' % p) | |
| 1064 self.assertEqual(2, len(m)) | |
| 1065 self.assertTrue('LastUpdate' in m) | |
| 1066 self.assertTrue('5555' in m) | |
| 1067 self.assertEqual('coucou', DoGet(_REMOTE, '/patients/%s/metadata/5555' % p)) | |
| 1068 DoPut(_REMOTE, '/patients/%s/metadata/5555' % p, 'hello') | |
| 1069 self.assertEqual('hello', DoGet(_REMOTE, '/patients/%s/metadata/5555' % p)) | |
| 1070 DoDelete(_REMOTE, '/patients/%s/metadata/5555' % p) | |
| 1071 m = DoGet(_REMOTE, '/patients/%s/metadata' % p) | |
| 1072 self.assertEqual(1, len(m)) | |
| 1073 self.assertTrue('LastUpdate' in m) | |
| 13 | 1074 |
| 1075 | |
| 1076 def test_statistics(self): | |
| 1077 # Upload 16 instances | |
| 1078 for i in range(4): | |
| 1079 UploadInstance(_REMOTE, 'Brainix/Flair/IM-0001-000%d.dcm' % (i + 1)) | |
| 1080 UploadInstance(_REMOTE, 'Brainix/Epi/IM-0001-000%d.dcm' % (i + 1)) | |
| 1081 UploadInstance(_REMOTE, 'Knee/T1/IM-0001-000%d.dcm' % (i + 1)) | |
| 1082 UploadInstance(_REMOTE, 'Knee/T2/IM-0001-000%d.dcm' % (i + 1)) | |
| 1083 | |
| 1084 s = DoGet(_REMOTE, '/statistics') | |
| 1085 self.assertEqual(16, s['CountInstances']) | |
| 1086 self.assertEqual(2, s['CountPatients']) | |
| 1087 self.assertEqual(2, s['CountStudies']) | |
| 1088 self.assertEqual(4, s['CountSeries']) | |
| 1089 d = int(s['TotalUncompressedSize']) | |
| 1090 | |
| 1091 e = 0 | |
| 1092 for patient in DoGet(_REMOTE, '/patients'): | |
| 1093 s = DoGet(_REMOTE, '/patients/%s/statistics' % patient) | |
| 1094 self.assertEqual(8, s['CountInstances']) | |
| 1095 self.assertEqual(1, s['CountStudies']) | |
| 1096 self.assertEqual(2, s['CountSeries']) | |
| 1097 e += int(s['UncompressedSize']) | |
| 1098 | |
| 1099 for study in DoGet(_REMOTE, '/studies'): | |
| 1100 s = DoGet(_REMOTE, '/studies/%s/statistics' % study) | |
| 1101 self.assertEqual(8, s['CountInstances']) | |
| 1102 self.assertEqual(2, s['CountSeries']) | |
| 1103 e += int(s['UncompressedSize']) | |
| 1104 | |
| 1105 for series in DoGet(_REMOTE, '/series'): | |
| 1106 s = DoGet(_REMOTE, '/series/%s/statistics' % series) | |
| 1107 self.assertEqual(4, s['CountInstances']) | |
| 1108 e += int(s['UncompressedSize']) | |
| 1109 | |
| 1110 self.assertEqual(3 * d, e) | |
| 1111 | |
| 1112 | |
| 1113 def test_custom_attachment(self): | |
| 1114 UploadInstance(_REMOTE, 'Brainix/Flair/IM-0001-0001.dcm') | |
| 1115 patient = DoGet(_REMOTE, '/patients')[0] | |
| 1116 instance = DoGet(_REMOTE, '/instances')[0] | |
| 1117 size = int(DoGet(_REMOTE, '/patients/%s/statistics' % patient)['DiskSize']) | |
| 1118 self.assertEqual(size, int(DoGet(_REMOTE, '/statistics')['TotalDiskSize'])) | |
| 1119 | |
| 1120 self.assertEqual(0, len(DoGet(_REMOTE, '/patients/%s/attachments' % patient))) | |
| 1121 self.assertEqual(2, len(DoGet(_REMOTE, '/instances/%s/attachments' % instance))) | |
| 1122 self.assertTrue('dicom' in DoGet(_REMOTE, '/instances/%s/attachments' % instance)) | |
| 1123 self.assertTrue('dicom-as-json' in DoGet(_REMOTE, '/instances/%s/attachments' % instance)) | |
| 1124 | |
| 1125 self.assertRaises(Exception, lambda: DoPut(_REMOTE, '/patients/%s/attachments/22' % patient, 'hello')) | |
| 1126 hello = 'hellohellohellohellohellohellohellohellohello' | |
| 1127 DoPut(_REMOTE, '/patients/%s/attachments/1025' % patient, hello) | |
| 1128 self.assertEqual(int(DoGet(_REMOTE, '/patients/%s/statistics' % patient)['DiskSize']), | |
| 1129 int(DoGet(_REMOTE, '/statistics')['TotalDiskSize'])) | |
| 1130 self.assertEqual(int(DoGet(_REMOTE, '/patients/%s/statistics' % patient)['DiskSize']), | |
| 1131 size + int(DoGet(_REMOTE, '/patients/%s/attachments/1025/compressed-size' % patient))) | |
| 1132 | |
| 1133 DoPut(_REMOTE, '/patients/%s/attachments/1026' % patient, 'world') | |
| 1134 self.assertEqual(int(DoGet(_REMOTE, '/patients/%s/statistics' % patient)['DiskSize']), | |
| 1135 int(DoGet(_REMOTE, '/statistics')['TotalDiskSize'])) | |
| 1136 self.assertEqual(int(DoGet(_REMOTE, '/patients/%s/statistics' % patient)['DiskSize']), | |
| 1137 size + | |
| 1138 int(DoGet(_REMOTE, '/patients/%s/attachments/1025/compressed-size' % patient)) + | |
| 1139 int(DoGet(_REMOTE, '/patients/%s/attachments/1026/compressed-size' % patient))) | |
| 1140 | |
| 1141 self.assertEqual(2, len(DoGet(_REMOTE, '/patients/%s/attachments' % patient))) | |
| 1142 self.assertEqual(hello, DoGet(_REMOTE, '/patients/%s/attachments/1025/data' % patient)) | |
| 1143 self.assertEqual('world', DoGet(_REMOTE, '/patients/%s/attachments/1026/data' % patient)) | |
| 1144 DoPost(_REMOTE, '/patients/%s/attachments/1025/verify-md5' % patient) | |
| 1145 DoPost(_REMOTE, '/patients/%s/attachments/1026/verify-md5' % patient) | |
| 1146 DoPut(_REMOTE, '/patients/%s/attachments/1026' % patient, 'world2') | |
| 1147 self.assertEqual('world2', DoGet(_REMOTE, '/patients/%s/attachments/1026/data' % patient)) | |
| 1148 | |
| 1149 self.assertRaises(Exception, lambda: DoDelete(_REMOTE, '/instances/%s/attachments/dicom' % instance)) | |
| 1150 DoDelete(_REMOTE, '/patients/%s/attachments/1025' % patient) | |
| 1151 self.assertEqual(int(DoGet(_REMOTE, '/patients/%s/statistics' % patient)['DiskSize']), | |
| 1152 int(DoGet(_REMOTE, '/statistics')['TotalDiskSize'])) | |
| 1153 self.assertEqual(int(DoGet(_REMOTE, '/patients/%s/statistics' % patient)['DiskSize']), | |
| 1154 size + int(DoGet(_REMOTE, '/patients/%s/attachments/1026/compressed-size' % patient))) | |
| 1155 | |
| 1156 self.assertEqual(1, len(DoGet(_REMOTE, '/patients/%s/attachments' % patient))) | |
| 1157 DoDelete(_REMOTE, '/patients/%s/attachments/1026' % patient) | |
| 1158 self.assertEqual(0, len(DoGet(_REMOTE, '/patients/%s/attachments' % patient))) | |
| 1159 | |
| 1160 self.assertEqual(int(DoGet(_REMOTE, '/patients/%s/statistics' % patient)['DiskSize']), size) | |
| 1161 self.assertEqual(size, int(DoGet(_REMOTE, '/statistics')['TotalDiskSize'])) | |
| 1162 | |
| 1163 | |
| 1164 def test_incoming_storescu(self): | |
| 1165 self.assertEqual(0, len(DoGet(_REMOTE, '/patients'))) | |
| 45 | 1166 subprocess.check_call([ FindExecutable('storescu'), |
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1167 _REMOTE['Server'], str(_REMOTE['DicomPort']), |
| 13 | 1168 GetDatabasePath('ColorTestImageJ.dcm') ]) |
| 1169 self.assertEqual(1, len(DoGet(_REMOTE, '/patients'))) | |
| 1170 | |
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1171 i = DoGet(_REMOTE, '/instances') |
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1172 self.assertEqual(1, len(i)) |
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1173 m = DoGet(_REMOTE, '/instances/%s/metadata' % i[0]) |
| 145 | 1174 self.assertEqual(8, len(m)) |
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1175 self.assertTrue('IndexInSeries' in m) |
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1176 self.assertTrue('ReceptionDate' in m) |
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1177 self.assertTrue('RemoteAET' in m) |
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1178 self.assertTrue('Origin' in m) |
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1179 self.assertTrue('TransferSyntax' in m) |
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1180 self.assertTrue('SopClassUid' in m) |
| 145 | 1181 self.assertTrue('RemoteIP' in m) |
| 1182 self.assertTrue('CalledAET' in m) | |
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1183 self.assertEqual(DoGet(_REMOTE, '/instances/%s/metadata/IndexInSeries' % i[0]), 1) |
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1184 self.assertEqual(DoGet(_REMOTE, '/instances/%s/metadata/Origin' % i[0]), 'DicomProtocol') |
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1185 self.assertEqual(DoGet(_REMOTE, '/instances/%s/metadata/RemoteAET' % i[0]), 'STORESCU') |
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1186 self.assertEqual(DoGet(_REMOTE, '/instances/%s/metadata/TransferSyntax' % i[0]), '1.2.840.10008.1.2.1') |
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1187 self.assertEqual(DoGet(_REMOTE, '/instances/%s/metadata/SopClassUid' % i[0]), '1.2.840.10008.5.1.4.1.1.7') |
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1188 |
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1189 series = DoGet(_REMOTE, '/series')[0] |
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1190 m = DoGet(_REMOTE, '/series/%s/metadata' % series) |
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1191 self.assertEqual(2, len(m)) |
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1192 self.assertTrue('LastUpdate' in m) |
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1193 self.assertTrue('RemoteAET' in m) |
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1194 self.assertEqual(DoGet(_REMOTE, '/series/%s/metadata/RemoteAET' % series), 'STORESCU') |
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1195 self.assertEqual(DoGet(_REMOTE, '/series/%s/metadata/LastUpdate' % series), |
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1196 DoGet(_REMOTE, '/instances/%s/metadata/ReceptionDate' % i[0])) |
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1197 |
| 13 | 1198 |
| 1199 def test_incoming_findscu(self): | |
| 1200 UploadInstance(_REMOTE, 'Multiframe.dcm') | |
| 1201 UploadInstance(_REMOTE, 'ColorTestImageJ.dcm') | |
| 1202 | |
| 1203 i = CallFindScu([ '-k', '0008,0052=PATIENT', '-k', '0010,0010' ]) | |
| 1204 patientNames = re.findall('\(0010,0010\).*?\[(.*?)\]', i) | |
| 1205 self.assertEqual(2, len(patientNames)) | |
| 1206 self.assertTrue('Test Patient BG ' in patientNames) | |
| 1207 self.assertTrue('Anonymized' in patientNames) | |
| 1208 | |
| 1209 i = CallFindScu([ '-k', '0008,0052=SERIES', '-k', '0008,0021' ]) | |
| 1210 series = re.findall('\(0008,0021\).*?\[\s*(.*?)\s*\]', i) | |
| 1211 self.assertEqual(2, len(series)) | |
| 1212 self.assertTrue('20070208' in series) | |
| 1213 self.assertTrue('19980312' in series) | |
| 1214 | |
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1215 i = CallFindScu([ '-k', '0008,0052=SERIES', '-k', '0008,0021', '-k', 'Modality=MR\\XA' ]) |
|
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1216 series = re.findall('\(0008,0021\).*?\[\s*(.*?)\s*\]', i) |
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1217 self.assertEqual(1, len(series)) |
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1218 self.assertTrue('19980312' in series) |
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1219 |
| 13 | 1220 i = CallFindScu([ '-k', '0008,0052=SERIES', '-k', 'PatientName=Anonymized' ]) |
| 1221 series = re.findall('\(0010,0010\).*?\[\s*(.*?)\s*\]', i) | |
| 1222 self.assertEqual(1, len(series)) | |
| 1223 | |
| 1224 # Test the "CaseSentitivePN" flag (false by default) | |
| 1225 i = CallFindScu([ '-k', '0008,0052=SERIES', '-k', 'PatientName=anonymized' ]) | |
| 1226 series = re.findall('\(0010,0010\).*?\[\s*(.*?)\s*\]', i) | |
| 1227 self.assertEqual(1, len(series)) | |
|
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1228 |
| 70 | 1229 # Test range search (buggy if Orthanc <= 0.9.6) |
| 1230 i = CallFindScu([ '-k', '0008,0052=STUDY', '-k', 'StudyDate=19980312-' ]) | |
| 1231 studies = re.findall('\(0008,0020\).*?\[\s*(.*?)\s*\]', i) | |
| 1232 self.assertEqual(2, len(studies)) | |
| 1233 self.assertTrue('20070208' in studies) | |
| 1234 self.assertTrue('19980312' in studies) | |
| 1235 i = CallFindScu([ '-k', '0008,0052=STUDY', '-k', 'StudyDate=19980312-19980312' ]) | |
| 1236 studies = re.findall('\(0008,0020\).*?\[\s*(.*?)\s*\]', i) | |
| 1237 self.assertEqual(1, len(studies)) | |
| 1238 self.assertTrue('19980312' in studies) | |
| 1239 i = CallFindScu([ '-k', '0008,0052=STUDY', '-k', 'StudyDate=-19980312' ]) | |
| 1240 studies = re.findall('\(0008,0020\).*?\[\s*(.*?)\s*\]', i) | |
| 1241 self.assertEqual(1, len(studies)) | |
| 1242 self.assertTrue('19980312' in studies) | |
|
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1243 |
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1244 # Test that "Retrieve AE Title (0008,0054)" is present, which |
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1245 # was *not* the case in Orthanc <= 1.7.2 |
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1246 i = CallFindScu([ '-k', '0008,0052=INSTANCE' ]) |
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1247 instances = re.findall('\(0008,0054\).*?\[\s*(.*?)\s*\]', i) |
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1248 self.assertEqual(2, len(instances)) |
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1249 self.assertEqual('ORTHANC', instances[0].strip()) |
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1250 self.assertEqual('ORTHANC', instances[1].strip()) |
| 13 | 1251 |
| 1252 | |
|
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1253 def test_incoming_findscu_2(self): |
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1254 # This test fails if "LookupMode_DatabaseOnly" is used |
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1255 # (sequences are not available in this mode, and only main |
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1256 # DICOM tags are returned) |
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1257 UploadInstance(_REMOTE, 'Multiframe.dcm') |
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1258 UploadInstance(_REMOTE, 'ColorTestImageJ.dcm') |
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1259 |
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1260 # Test returning sequence values (only since Orthanc 0.9.5) |
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1261 i = CallFindScu([ '-k', '0008,0052=SERIES', '-k', '0008,2112' ]) # "ColorTestImageJ" has this sequence tag |
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1262 sequences = re.findall('\(0008,2112\)', i) |
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1263 self.assertEqual(1, len(sequences)) |
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1264 |
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1265 # Test returning a non-main DICOM tag, |
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1266 # "SecondaryCaptureDeviceID" (0018,1010), whose value is |
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1267 # "MEDPC" in "ColorTestImageJ.dcm" |
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1268 i = CallFindScu([ '-k', '0008,0052=SERIES', '-k', '0018,1010' ]) |
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1269 tags = re.findall('\(0018,1010\).*MEDPC', i) |
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1270 self.assertEqual(1, len(tags)) |
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1271 |
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1272 |
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1273 def test_incoming_findscu_3(self): |
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1274 # This test fails if "LookupMode_DatabaseOnly" or |
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1275 # "LookupMode_DiskOnAnswer" is used, as |
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1276 # "SecondaryCaptureDeviceID" (0018,1010) is not a main DICOM |
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1277 # tag, as thus a constraint cannot be applied to it |
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1278 UploadInstance(_REMOTE, 'ColorTestImageJ.dcm') |
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1279 |
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1280 i = CallFindScu([ '-k', '0008,0052=SERIES', '-k', '0018,1010=MEDPC' ]) |
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1281 sequences = re.findall('\(0018,1010\)', i) |
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1282 self.assertEqual(1, len(sequences)) |
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1283 |
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1284 |
| 13 | 1285 def test_incoming_movescu(self): |
| 1286 UploadInstance(_REMOTE, 'Multiframe.dcm') | |
|
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1287 |
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1288 # No matching patient, so no job is created |
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1289 self.assertEqual(0, len(DoGet(_LOCAL, '/patients'))) |
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1290 CallMoveScu([ '--patient', '-k', '0008,0052=PATIENT', '-k', 'PatientID=none' ]) |
| 13 | 1291 self.assertEqual(0, len(DoGet(_LOCAL, '/patients'))) |
|
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1292 |
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1293 # 1 Matching patient, track the job |
| 138 | 1294 self.assertTrue(MonitorJob(_REMOTE, lambda: CallMoveScu([ |
| 1295 '--patient', | |
| 1296 '-k', '0008,0052=PATIENT', | |
| 1297 '-k', 'PatientID=12345678' | |
| 1298 ]))) | |
| 13 | 1299 self.assertEqual(1, len(DoGet(_LOCAL, '/patients'))) |
| 1300 | |
| 1301 | |
| 1302 def test_findscu(self): | |
| 1303 i = UploadInstance(_REMOTE, 'DummyCT.dcm')['ID'] | |
| 1304 j = UploadInstance(_REMOTE, 'Issue22.dcm')['ID'] | |
| 1305 k = UploadInstance(_REMOTE, 'ColorTestImageJ.dcm')['ID'] | |
| 1306 DoPost(_REMOTE, '/modalities/orthanctest/store', str(i), 'text/plain') | |
| 1307 | |
| 1308 # Test the "find-patient" level | |
| 1309 p = DoPost(_REMOTE, '/modalities/orthanctest/find-patient', { }) | |
| 1310 self.assertEqual(1, len(p)) | |
| 1311 self.assertEqual('ozp00SjY2xG', p[0]['PatientID']) | |
| 1312 | |
| 1313 # Test wildcards constraints. The "LO" value representation | |
| 1314 # for PatientID is always case-sensitive, but the "PN" for | |
| 1315 # PatientName might depend on the implementation: | |
| 1316 # "GenerateConfigurationForTests.py" will force it to be case | |
| 1317 # insensitive (which was the default until Orthanc 0.8.6). | |
| 1318 p = DoPost(_REMOTE, '/modalities/orthanctest/find-patient', { 'PatientName' : 'K*' }) | |
| 1319 self.assertEqual(1, len(p)) | |
| 1320 | |
| 1321 p = DoPost(_REMOTE, '/modalities/orthanctest/find-patient', { 'PatientName' : 'k*' }) | |
| 1322 self.assertEqual(1, len(p)) | |
| 1323 | |
| 1324 p = DoPost(_REMOTE, '/modalities/orthanctest/find-patient', { 'PatientID' : 'ozp*' }) | |
| 1325 self.assertEqual(1, len(p)) | |
| 1326 | |
| 1327 p = DoPost(_REMOTE, '/modalities/orthanctest/find-patient', { 'PatientID' : 'o?p*' }) | |
| 1328 self.assertEqual(1, len(p)) | |
| 1329 | |
| 1330 p = DoPost(_REMOTE, '/modalities/orthanctest/find-patient', { 'PatientID' : '0?q*' }) | |
| 1331 self.assertEqual(0, len(p)) | |
| 1332 | |
| 1333 p = DoPost(_REMOTE, '/modalities/orthanctest/find-patient', { 'PatientName' : 'B*' }) | |
| 1334 self.assertEqual(0, len(p)) | |
| 1335 | |
| 1336 p = DoPost(_REMOTE, '/modalities/orthanctest/find-patient', { 'PatientName' : 'b*' }) | |
| 1337 self.assertEqual(0, len(p)) | |
| 1338 | |
| 1339 DoPost(_REMOTE, '/modalities/orthanctest/store', str(j), 'text/plain') | |
| 1340 DoPost(_REMOTE, '/modalities/orthanctest/store', str(k), 'text/plain') | |
| 1341 DoPost(_REMOTE, '/modalities/orthanctest/find-patient', { }) | |
| 1342 self.assertEqual(3, len(DoPost(_REMOTE, '/modalities/orthanctest/find-patient', { }))) | |
| 1343 | |
| 1344 p = DoPost(_REMOTE, '/modalities/orthanctest/find-patient', { 'PatientName' : 'A*' }) | |
| 1345 self.assertEqual(2, len(p)) | |
| 1346 | |
| 1347 # Test the "find-study" level. This is the instance "ColorTestImageJ.dcm" | |
| 1348 s = DoPost(_REMOTE, '/modalities/orthanctest/find-study', { 'PatientID' : 'B9uTHKOZ' }) | |
| 1349 self.assertEqual(1, len(s)) | |
| 1350 self.assertEqual('20070208', s[0]['StudyDate']) | |
| 1351 | |
| 1352 # Test range searches | |
| 1353 t = DoPost(_REMOTE, '/modalities/orthanctest/find-study', { 'PatientID' : 'B9uTHKOZ', | |
| 1354 'StudyDate' : '-20070101' }) | |
| 1355 self.assertEqual(0, len(t)) | |
| 1356 | |
| 1357 t = DoPost(_REMOTE, '/modalities/orthanctest/find-study', { 'PatientID' : 'B9uTHKOZ', | |
| 1358 'StudyDate' : '20090101-' }) | |
| 1359 self.assertEqual(0, len(t)) | |
| 1360 | |
| 1361 t = DoPost(_REMOTE, '/modalities/orthanctest/find-study', { 'PatientID' : 'B9uTHKOZ', | |
| 1362 'StudyDate' : '20070101-' }) | |
| 1363 self.assertEqual(1, len(t)) | |
| 1364 | |
| 1365 t = DoPost(_REMOTE, '/modalities/orthanctest/find-study', { 'PatientID' : 'B9uTHKOZ', | |
| 1366 'StudyDate' : '-20090101' }) | |
| 1367 self.assertEqual(1, len(t)) | |
| 1368 | |
| 1369 t = DoPost(_REMOTE, '/modalities/orthanctest/find-study', { 'PatientID' : 'B9uTHKOZ', | |
| 1370 'StudyDate' : '20070207-20070207' }) | |
| 1371 self.assertEqual(0, len(t)) | |
| 1372 | |
| 1373 t = DoPost(_REMOTE, '/modalities/orthanctest/find-study', { 'PatientID' : 'B9uTHKOZ', | |
| 1374 'StudyDate' : '20070208-20070208' }) | |
| 1375 self.assertEqual(1, len(t)) | |
| 1376 | |
| 1377 t = DoPost(_REMOTE, '/modalities/orthanctest/find-study', { 'PatientID' : 'B9uTHKOZ', | |
| 1378 'StudyDate' : '20070209-20070209' }) | |
| 1379 self.assertEqual(0, len(t)) | |
| 1380 | |
| 1381 # Test the ModalitiesInStudy tag | |
| 1382 t = DoPost(_REMOTE, '/modalities/orthanctest/find-study', { | |
| 1383 'PatientID' : 'B9uTHKOZ', | |
| 1384 'ModalitiesInStudy' : 'US' }) | |
| 1385 self.assertEqual(0, len(t)) | |
| 1386 | |
| 1387 t = DoPost(_REMOTE, '/modalities/orthanctest/find-study', { | |
| 1388 'PatientID' : 'B9uTHKOZ', | |
| 1389 'ModalitiesInStudy' : 'CT' }) | |
| 1390 self.assertEqual(1, len(t)) | |
| 1391 | |
| 1392 t = DoPost(_REMOTE, '/modalities/orthanctest/find-study', { | |
| 1393 'PatientID' : 'B9uTHKOZ', | |
| 1394 'ModalitiesInStudy' : 'US\\CT' }) | |
| 1395 self.assertEqual(1, len(t)) | |
| 1396 | |
| 1397 # Test the "find-series" level | |
| 1398 t = DoPost(_REMOTE, '/modalities/orthanctest/find-series', { | |
| 1399 'PatientID' : 'B9uTHKOZ', | |
| 1400 'StudyInstanceUID' : s[0]['StudyInstanceUID'] }) | |
| 1401 self.assertEqual(1, len(t)) | |
| 1402 | |
| 1403 # Test "\" separator | |
| 1404 t = DoPost(_REMOTE, '/modalities/orthanctest/find-series', { | |
| 1405 'PatientID' : 'B9uTHKOZ', | |
| 1406 'StudyInstanceUID' : s[0]['StudyInstanceUID'], | |
| 1407 'Modality' : 'MR\\CT\\US' }) | |
| 1408 self.assertEqual(1, len(t)) | |
| 1409 | |
| 1410 t = DoPost(_REMOTE, '/modalities/orthanctest/find-series', { | |
| 1411 'PatientID' : 'B9uTHKOZ', | |
| 1412 'StudyInstanceUID' : s[0]['StudyInstanceUID'], | |
| 1413 'Modality' : 'MR\\US' }) | |
| 1414 self.assertEqual(0, len(t)) | |
| 1415 | |
| 1416 | |
| 1417 def test_update_modalities(self): | |
| 1418 try: | |
| 1419 DoDelete(_REMOTE, '/modalities/toto') | |
| 1420 except: | |
| 1421 pass | |
| 1422 try: | |
| 1423 DoDelete(_REMOTE, '/modalities/tata') | |
| 1424 except: | |
| 1425 pass | |
| 1426 self.assertRaises(Exception, lambda: DoGet(_REMOTE, '/modalities/toto')) | |
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1427 self.assertRaises(Exception, lambda: DoDelete(_REMOTE, '/modalities/toto')) |
| 13 | 1428 DoPut(_REMOTE, '/modalities/toto', [ "STORESCP", "localhost", 2000 ]) |
| 116 | 1429 DoPut(_REMOTE, '/modalities/tata', [ "STORESCP", "localhost", 2000, 'MedInria' ]) # check backward compatiblity with obsolete manufacturer |
| 1430 DoDelete(_REMOTE, '/modalities/tata') | |
| 124 | 1431 DoPut(_REMOTE, '/modalities/tata', [ "STORESCP", "localhost", 2000, 'GenericNoUniversalWildcard' ]) |
|
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1432 DoDelete(_REMOTE, '/modalities/tata') |
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1433 DoPut(_REMOTE, '/modalities/tata', [ "STORESCP", "localhost", 2000, 'GenericNoWildcardInDates' ]) |
| 128 | 1434 modalitiesReadback = DoGet(_REMOTE, '/modalities?expand') |
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1435 self.assertEqual('STORESCP', modalitiesReadback['tata']['AET']) |
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1436 self.assertEqual('localhost', modalitiesReadback['tata']['Host']) |
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1437 self.assertEqual(2000, modalitiesReadback['tata']['Port']) |
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1438 self.assertEqual('GenericNoWildcardInDates', modalitiesReadback['tata']['Manufacturer']) |
| 116 | 1439 self.assertRaises(Exception, lambda: DoPut(_REMOTE, '/modalities/toto', [ "STORESCP", "localhost", 2000, 'InvalidManufacturerName' ])) |
| 13 | 1440 self.assertTrue('store' in DoGet(_REMOTE, '/modalities/toto')) |
| 1441 self.assertTrue('store' in DoGet(_REMOTE, '/modalities/tata')) | |
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1442 |
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1443 # New in Orthanc 1.8.1 |
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1444 self.assertTrue('configuration' in DoGet(_REMOTE, '/modalities/tata')) |
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1445 self.assertEqual(modalitiesReadback['tata'], DoGet(_REMOTE, '/modalities/tata/configuration')) |
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1446 |
| 13 | 1447 DoDelete(_REMOTE, '/modalities/toto') |
| 1448 DoDelete(_REMOTE, '/modalities/tata') | |
| 1449 self.assertRaises(Exception, lambda: DoGet(_REMOTE, '/modalities/toto')) | |
| 1450 self.assertRaises(Exception, lambda: DoGet(_REMOTE, '/modalities/tata')) | |
| 1451 | |
| 1452 | |
| 1453 def test_update_peers(self): | |
| 1454 # curl -X PUT http://localhost:8042/peers/toto -d '["http://localhost:8042/"]' -v | |
| 1455 try: | |
| 1456 DoDelete(_REMOTE, '/peers/toto') | |
| 1457 except: | |
| 1458 pass | |
| 1459 try: | |
| 1460 DoDelete(_REMOTE, '/peers/tata') | |
| 1461 except: | |
| 1462 pass | |
| 1463 self.assertRaises(Exception, lambda: DoGet(_REMOTE, '/peers/toto')) | |
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1464 self.assertRaises(Exception, lambda: DoDelete(_REMOTE, '/peers/toto')) |
| 13 | 1465 DoPut(_REMOTE, '/peers/toto', [ 'http://localhost:8042/' ]) |
| 214 | 1466 DoPut(_REMOTE, '/peers/tata', { 'Url': 'http://localhost:8042/', |
| 1467 'Username': 'user', | |
| 1468 'Password' : 'pass', | |
| 1469 'RemoteSelf' : 'self' }) | |
| 128 | 1470 self.assertTrue('tata' in DoGet(_REMOTE, '/peers')) |
| 1471 peersReadback = DoGet(_REMOTE, '/peers?expand') | |
| 1472 self.assertEqual('http://localhost:8042/', peersReadback['tata']['Url']) | |
| 1473 self.assertEqual('user', peersReadback['tata']['Username']) | |
| 214 | 1474 |
| 1475 if IsOrthancVersionAbove(_REMOTE, 1, 5, 4): | |
| 1476 self.assertEqual(None, peersReadback['tata']['Password']) # make sure no sensitive data is included | |
| 1477 self.assertFalse(peersReadback['tata']['Pkcs11']) # make sure no sensitive data is included | |
| 1478 self.assertEqual('self', peersReadback['tata']['RemoteSelf']) | |
| 1479 else: | |
| 1480 self.assertFalse('Password' in peersReadback['tata']) # make sure no sensitive data is included | |
| 1481 self.assertFalse('Pkcs11' in peersReadback['tata']) # make sure no sensitive data is included | |
| 1482 self.assertFalse('RemoteSelf' in peersReadback['tata']) | |
| 1483 | |
| 128 | 1484 self.assertFalse('CertificateFile' in peersReadback['tata']) # make sure no sensitive data is included |
| 1485 self.assertFalse('CertificateKeyFile' in peersReadback['tata']) # make sure no sensitive data is included | |
| 1486 self.assertFalse('CertificateKeyPassword' in peersReadback['tata']) # make sure no sensitive data is included | |
| 214 | 1487 |
| 13 | 1488 self.assertRaises(Exception, lambda: DoPut(_REMOTE, '/peers/toto', [ 'http://localhost:8042/', 'a' ])) |
| 1489 self.assertRaises(Exception, lambda: DoPut(_REMOTE, '/peers/toto', [ 'http://localhost:8042/', 'a', 'b', 'c' ])) | |
| 1490 self.assertTrue('store' in DoGet(_REMOTE, '/peers/toto')) | |
| 1491 self.assertTrue('store' in DoGet(_REMOTE, '/peers/tata')) | |
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1492 |
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1493 # New in Orthanc 1.8.1 |
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1494 self.assertTrue('configuration' in DoGet(_REMOTE, '/peers/tata')) |
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1495 self.assertEqual(peersReadback['tata'], DoGet(_REMOTE, '/peers/tata/configuration')) |
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1496 |
| 13 | 1497 DoDelete(_REMOTE, '/peers/toto') |
| 1498 DoDelete(_REMOTE, '/peers/tata') | |
| 1499 self.assertRaises(Exception, lambda: DoGet(_REMOTE, '/peers/toto')) | |
| 1500 self.assertRaises(Exception, lambda: DoGet(_REMOTE, '/peers/tata')) | |
| 1501 | |
| 1502 | |
| 1503 def test_mesterhazy_modification(self): | |
| 1504 # When I modify a series ( eg. curl | |
| 1505 # http://localhost:8042/series/uidhere/modify -X POST -d | |
| 1506 # '{"Replace":{"SeriesDate":"19990101"}}' ) the modified | |
| 1507 # series is added to a new Study, instead of the existing | |
| 1508 # Study. Fixed in Orthanc 0.7.5 | |
| 1509 | |
| 1510 u = UploadInstance(_REMOTE, 'DummyCT.dcm') | |
| 1511 study = 'b9c08539-26f93bde-c81ab0d7-bffaf2cb-a4d0bdd0' | |
| 1512 series = 'f2635388-f01d497a-15f7c06b-ad7dba06-c4c599fe' | |
| 1513 | |
| 1514 modified = DoPost(_REMOTE, '/series/%s/modify' % series, | |
| 1515 json.dumps({ "Replace" : { "SeriesDate" : "19990101" }})) | |
| 1516 | |
| 1517 self.assertEqual(study, DoGet(_REMOTE, '/series/%s' % modified['ID']) ['ParentStudy']) | |
| 1518 | |
| 1519 | |
| 1520 def test_create(self): | |
| 1521 i = DoPost(_REMOTE, '/tools/create-dicom', | |
| 1522 json.dumps({ | |
| 1523 'PatientName' : 'Jodogne', | |
| 1524 'Modality' : 'CT', | |
| 58 | 1525 'SOPClassUID' : '1.2.840.10008.5.1.4.1.1.1', |
| 13 | 1526 'PixelData' : 'data:image/png;base64,iVBORw0KGgoAAAANSUhEUgAAAAUAAAAFCAYAAACNbyblAAAAHElEQVQI12P4//8/w38GIAXDIBKE0DHxgljNBAAO9TXL0Y4OHwAAAABJRU5ErkJggg==' # red dot in RGBA |
| 1527 })) | |
| 1528 | |
| 1529 self.assertEqual('Jodogne', DoGet(_REMOTE, '/instances/%s/content/PatientName' % i['ID']).strip()) | |
| 1530 self.assertEqual('CT', DoGet(_REMOTE, '/instances/%s/content/Modality' % i['ID']).strip()) | |
| 1531 | |
| 1532 png = GetImage(_REMOTE, '/instances/%s/preview' % i['ID']) | |
| 1533 self.assertEqual((5, 5), png.size) | |
| 1534 | |
| 38 | 1535 j = DoGet(_REMOTE, i['Path']) |
| 1536 self.assertEqual('Instance', j['Type']) | |
| 1537 self.assertEqual(j['ID'], i['ID']) | |
| 1538 | |
| 13 | 1539 |
| 1540 def test_pilates(self): | |
| 1541 # "SCU failed error when accessing orthanc with osirix" by | |
| 1542 # Pilates Agentur (Mar 10, 2014 at 9:33 PM) | |
| 1543 i = UploadInstance(_REMOTE, 'PilatesArgenturGEUltrasoundOsiriX.dcm')['ID'] | |
| 1544 self.assertEqual(0, len(DoGet(_LOCAL, '/patients'))) | |
| 1545 j = DoPost(_REMOTE, '/modalities/orthanctest/store', str(i), 'text/plain') | |
| 1546 self.assertEqual(1, len(DoGet(_LOCAL, '/patients'))) | |
| 1547 | |
| 1548 | |
| 1549 def test_shared_tags(self): | |
| 1550 a = UploadInstance(_REMOTE, 'Knee/T1/IM-0001-0001.dcm')['ID'] | |
| 1551 b = UploadInstance(_REMOTE, 'Knee/T1/IM-0001-0002.dcm')['ID'] | |
| 1552 p = DoGet(_REMOTE, '/patients')[0] | |
| 1553 | |
| 1554 self.assertTrue('0010,0010' in DoGet(_REMOTE, '/patients/%s/shared-tags' % p)) | |
| 1555 self.assertTrue('PatientName' in DoGet(_REMOTE, '/patients/%s/shared-tags?simplify' % p)) | |
|
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1556 self.assertTrue('0010,0010' in DoGet(_REMOTE, '/patients/%s/shared-tags?short' % p)) |
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1557 |
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1558 self.assertEqual('KNEE', DoGet(_REMOTE, '/patients/%s/shared-tags' % p)['0010,0010']['Value']) |
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1559 self.assertEqual('KNEE', DoGet(_REMOTE, '/patients/%s/shared-tags?simplify' % p)['PatientName']) |
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1560 self.assertEqual('KNEE', DoGet(_REMOTE, '/patients/%s/shared-tags?short' % p)['0010,0010']) |
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1561 |
| 13 | 1562 self.assertTrue('0008,1030' in DoGet(_REMOTE, '/patients/%s/shared-tags' % p)) |
| 1563 self.assertTrue('StudyDescription' in DoGet(_REMOTE, '/patients/%s/shared-tags?simplify' % p)) | |
| 1564 self.assertTrue('0008,103e' in DoGet(_REMOTE, '/patients/%s/shared-tags' % p)) | |
| 1565 self.assertTrue('SeriesDescription' in DoGet(_REMOTE, '/patients/%s/shared-tags?simplify' % p)) | |
| 1566 self.assertFalse('0008,0018' in DoGet(_REMOTE, '/patients/%s/shared-tags' % p)) | |
| 1567 self.assertFalse('SOPInstanceUID' in DoGet(_REMOTE, '/patients/%s/shared-tags?simplify' % p)) | |
| 1568 | |
| 1569 self.assertTrue('0008,0018' in DoGet(_REMOTE, '/instances/%s/tags' % a)) | |
| 1570 self.assertTrue('SOPInstanceUID' in DoGet(_REMOTE, '/instances/%s/tags?simplify' % a)) | |
| 1571 | |
| 1572 | |
| 1573 def test_modules(self): | |
| 1574 a = UploadInstance(_REMOTE, 'Knee/T1/IM-0001-0001.dcm')['ID'] | |
| 1575 p = DoGet(_REMOTE, '/patients')[0] | |
| 1576 s = DoGet(_REMOTE, '/studies')[0] | |
| 1577 t = DoGet(_REMOTE, '/series')[0] | |
| 1578 | |
| 1579 self.assertTrue('0010,0010' in DoGet(_REMOTE, '/patients/%s/module' % p)) | |
| 1580 self.assertTrue('PatientName' in DoGet(_REMOTE, '/patients/%s/module?simplify' % p)) | |
| 1581 self.assertTrue('0010,0010' in DoGet(_REMOTE, '/studies/%s/module-patient' % p)) | |
| 1582 self.assertTrue('PatientName' in DoGet(_REMOTE, '/studies/%s/module-patient?simplify' % p)) | |
| 1583 self.assertTrue('0008,1030' in DoGet(_REMOTE, '/studies/%s/module' % s)) | |
| 1584 self.assertTrue('StudyDescription' in DoGet(_REMOTE, '/studies/%s/module?simplify' % s)) | |
| 1585 self.assertTrue('0008,103e' in DoGet(_REMOTE, '/series/%s/module' % p)) | |
| 1586 self.assertTrue('SeriesDescription' in DoGet(_REMOTE, '/series/%s/module?simplify' % p)) | |
| 1587 self.assertTrue('0008,0018' in DoGet(_REMOTE, '/instances/%s/module' % a)) | |
| 1588 self.assertTrue('SOPInstanceUID' in DoGet(_REMOTE, '/instances/%s/module?simplify' % a)) | |
| 1589 | |
| 1590 | |
| 1591 def test_auto_directory(self): | |
| 1592 a = UploadInstance(_REMOTE, 'Knee/T1/IM-0001-0001.dcm')['ID'] | |
| 1593 self.assertTrue('now' in DoGet(_REMOTE, '/tools')) | |
| 1594 self.assertTrue('dicom-conformance' in DoGet(_REMOTE, '/tools')) | |
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1595 self.assertTrue('invalidate-tags' in DoGet(_REMOTE, '/tools')) |
| 13 | 1596 self.assertTrue(len(DoGet(_REMOTE, '/tools/dicom-conformance')) > 1000) |
| 1597 self.assertTrue('orthanctest' in DoGet(_REMOTE, '/modalities')) | |
| 1598 self.assertTrue('echo' in DoGet(_REMOTE, '/modalities/orthanctest')) | |
| 1599 self.assertTrue('find' in DoGet(_REMOTE, '/modalities/orthanctest')) | |
| 1600 self.assertTrue('find-instance' in DoGet(_REMOTE, '/modalities/orthanctest')) | |
| 1601 self.assertTrue('find-patient' in DoGet(_REMOTE, '/modalities/orthanctest')) | |
| 1602 self.assertTrue('find-series' in DoGet(_REMOTE, '/modalities/orthanctest')) | |
| 1603 self.assertTrue('find-study' in DoGet(_REMOTE, '/modalities/orthanctest')) | |
| 1604 self.assertTrue('store' in DoGet(_REMOTE, '/modalities/orthanctest')) | |
| 1605 self.assertTrue('store' in DoGet(_REMOTE, '/peers/peer')) | |
| 1606 self.assertTrue('matlab' in DoGet(_REMOTE, '/instances/%s/frames/0' % a)) | |
| 79 | 1607 self.assertTrue('raw' in DoGet(_REMOTE, '/instances/%s/frames/0' % a)) |
| 13 | 1608 self.assertRaises(Exception, lambda: DoGet(_REMOTE, '/tools/nope')) |
| 28 | 1609 self.assertRaises(Exception, lambda: DoGet(_REMOTE, '/nope')) |
| 1610 self.assertRaises(Exception, lambda: DoGet(_REMOTE, '/nope/nope.html')) | |
| 1611 self.assertEqual(404, DoGetRaw(_REMOTE, '/nope')[0].status) | |
| 1612 self.assertEqual(404, DoGetRaw(_REMOTE, '/nope/nope.html')[0].status) | |
| 13 | 1613 |
| 1614 | |
| 1615 def test_echo(self): | |
| 1616 DoPost(_REMOTE, '/modalities/orthanctest/echo') | |
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1617 DoPost(_REMOTE, '/modalities/orthanctest/echo', '{}') |
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1618 |
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1619 # The following was not working in Orthanc 1.7.0 -> 1.8.1 |
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1620 DoPost(_REMOTE, '/modalities/orthanctest/echo', '') |
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1621 self.assertRaises(Exception, lambda: DoGet(_REMOTE, '/modalities/nope/echo')) |
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1622 |
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1623 # New in Orthanc 1.8.1 |
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1624 DoPost(_REMOTE, '/tools/dicom-echo', [ |
| 355 | 1625 _REMOTE['DicomAet'], _REMOTE['Server'], _REMOTE['DicomPort'] ]) |
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1626 DoPost(_REMOTE, '/tools/dicom-echo', DoGet(_REMOTE, '/modalities/orthanctest/configuration')) |
| 13 | 1627 |
| 353 | 1628 # Use the 'CheckFind' new option in Orthanc 1.8.1 |
| 1629 DoPost(_REMOTE, '/modalities/self/echo', { 'CheckFind' : True }) | |
| 1630 DoPost(_REMOTE, '/tools/dicom-echo', { | |
| 1631 'AET' : _REMOTE['DicomAet'], | |
| 1632 'Host' : _REMOTE['Server'], | |
| 1633 'Port' : _REMOTE['DicomPort'], | |
| 1634 'CheckFind' : True | |
| 1635 }) | |
| 1636 | |
| 13 | 1637 |
| 1638 def test_xml(self): | |
| 1639 json = DoGet(_REMOTE, '/tools', headers = { 'accept' : 'application/json' }) | |
| 1640 xml = minidom.parseString(DoGet(_REMOTE, '/tools', headers = { 'accept' : 'application/xml' })) | |
| 1641 items = xml.getElementsByTagName('root')[0].getElementsByTagName('item') | |
| 1642 self.assertEqual(len(items), len(json)) | |
| 1643 | |
| 1644 self.assertTrue('dicom-conformance' in json) | |
| 1645 | |
| 1646 ok = False | |
| 1647 for i in items: | |
| 1648 if i.childNodes[0].data == 'dicom-conformance': | |
| 1649 ok = True | |
| 1650 self.assertTrue(ok) | |
| 1651 | |
| 1652 | |
|
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1653 def test_googlecode_issue_16(self): |
| 13 | 1654 i = UploadInstance(_REMOTE, 'Issue16.dcm')['ID'] |
| 1655 t = DoGet(_REMOTE, '/instances/%s/tags?simplify' % i)['FrameIncrementPointer'] | |
| 1656 self.assertEqual('0018,1063', t) | |
| 1657 | |
| 1658 | |
|
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1659 def test_googlecode_issue_22(self): |
| 13 | 1660 s = UploadInstance(_REMOTE, 'Issue22.dcm')['ID'] |
| 1661 a = [ | |
| 1662 "f804691f62197040438f4627c6b994f1", # Frame 0 | |
| 1663 "c69eee9a51eea3e8611e82e578897254", | |
| 1664 "315666be83e2d0111c77bc0996d84901", | |
| 1665 "3e27aa959d911172c48a1436443c72b1", | |
| 1666 "958642c9e7e9d232d3869faff546058c", | |
| 1667 "5e7ea8e3e4230cae707d143481355c59", | |
| 1668 "eda37f83558d858a596175aed8b2ad47", | |
| 1669 "486713bd2895c4ecbe0e97715ac7f80a", | |
| 1670 "091ef729eb169e67da8a0faa9631f9a8", | |
| 1671 "5aa2b8c7ffe0a483efaa8e12417686ca", | |
| 1672 "e2f39e85896fe58876654b94cd0b5013", | |
| 1673 "6fd2129e4950abbe1be053bc814d5da8", | |
| 1674 "c3331a8ba7a757f3d423735ab7fa81f9", | |
| 1675 "746f808582156734dd6b6fdfd3a0b72c", | |
| 1676 "8075ea2b227a70c60ea6b7b75a6bb190", | |
| 1677 "806b8b3e300c615099c11a5ec23465aa", | |
| 1678 "7c836aa298ba6eef96434579af631a11", | |
| 1679 "a0357dc9f4f72d73a885c33d7c287446", | |
| 1680 "f25ba3be1cc7d7fad95706adc199ea7d", | |
| 1681 "8b114c526b8cbed6cad8a3248b7b480c", | |
| 1682 "44e6670f127e612a2b4aa60a0d207698", | |
| 1683 "b8945f90fe02facf2ace24ca1ecbe0a5", | |
| 1684 "95c796c2fa8f59018b15cf2987b1f79b", | |
| 1685 "ce0a51ab30224205b44920221dc27351", # Frame 23 | |
| 1686 ] | |
| 1687 | |
| 1688 self.assertEqual(24, len(DoGet(_REMOTE, '/instances/%s/frames' % s))) | |
| 1689 self.assertRaises(Exception, lambda: DoGet(_REMOTE, '/instances/%s/frames/24/preview' % s)) | |
| 1690 | |
| 1691 for i in range(len(a)): | |
| 1692 self.assertEqual(a[i], ComputeMD5(DoGet(_REMOTE, '/instances/%s/frames/%d/preview' % (s, i)))) | |
| 1693 | |
| 1694 | |
|
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1695 def test_googlecode_issue_19(self): |
|
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1696 # This is an image with "YBR_FULL" photometric interpretation, it is not supported by Orthanc |
| 13 | 1697 # gdcmconv -i /home/jodogne/DICOM/GdcmDatabase/US_DataSet/HDI5000_US/3EAF5E01 -w -o Issue19.dcm |
| 1698 | |
| 1699 a = UploadInstance(_REMOTE, 'Issue19.dcm')['ID'] | |
| 304 | 1700 if not HasGdcmPlugin(_REMOTE): |
|
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1701 self.assertRaises(Exception, lambda: DoGet(_REMOTE, '/instances/941ad3c8-05d05b88-560459f9-0eae0e20-6cddd533/preview')) |
| 13 | 1702 |
| 1703 | |
|
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1704 def test_googlecode_issue_37(self): |
| 13 | 1705 # Same test for issues 35 and 37. Fixed in Orthanc 0.9.1 |
| 1706 u = UploadInstance(_REMOTE, 'Beaufix/IM-0001-0001.dcm')['ID'] | |
| 1707 | |
| 1708 a = DoPost(_REMOTE, '/tools/find', { 'Level' : 'Series', | |
| 1709 'CaseSensitive' : True, | |
| 1710 'Query' : { 'StationName' : 'SMR4-MP3' }}) | |
| 1711 self.assertEqual(1, len(a)) | |
| 14 | 1712 |
| 1713 | |
| 1714 def test_rest_find(self): | |
| 1715 # Upload 8 instances | |
| 1716 for i in range(2): | |
| 1717 UploadInstance(_REMOTE, 'Brainix/Flair/IM-0001-000%d.dcm' % (i + 1)) | |
| 1718 UploadInstance(_REMOTE, 'Brainix/Epi/IM-0001-000%d.dcm' % (i + 1)) | |
| 1719 UploadInstance(_REMOTE, 'Knee/T1/IM-0001-000%d.dcm' % (i + 1)) | |
| 1720 UploadInstance(_REMOTE, 'Knee/T2/IM-0001-000%d.dcm' % (i + 1)) | |
| 1721 | |
| 1722 a = DoPost(_REMOTE, '/tools/find', { 'Level' : 'Patient', | |
| 1723 'CaseSensitive' : False, | |
|
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1724 'Query' : { 'PatientName' : 'BRAINIX' }}) |
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1725 self.assertEqual(1, len(a)) |
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1726 |
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1727 a = DoPost(_REMOTE, '/tools/find', { 'Level' : 'Patient', |
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1728 'CaseSensitive' : False, |
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1729 'Query' : { 'PatientName' : 'BRAINIX\\KNEE\\NOPE' }}) |
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1730 self.assertEqual(2, len(a)) |
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1731 |
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1732 a = DoPost(_REMOTE, '/tools/find', { 'Level' : 'Patient', |
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1733 'CaseSensitive' : False, |
| 14 | 1734 'Query' : { 'PatientName' : '*n*' }}) |
| 1735 self.assertEqual(2, len(a)) | |
| 1736 | |
| 1737 a = DoPost(_REMOTE, '/tools/find', { 'Level' : 'Patient', | |
| 1738 'CaseSensitive' : True, | |
| 1739 'Query' : { 'PatientName' : '*n*' }}) | |
| 1740 self.assertEqual(0, len(a)) | |
| 1741 | |
| 1742 a = DoPost(_REMOTE, '/tools/find', { 'Expand' : True, | |
| 1743 'Level' : 'Patient', | |
| 1744 'CaseSensitive' : False, | |
| 1745 'Query' : { 'PatientName' : '*ne*' }}) | |
| 1746 self.assertEqual(1, len(a)) | |
| 1747 self.assertEqual('20080822', a[0]['MainDicomTags']['PatientBirthDate']) | |
| 1748 | |
| 1749 a = DoPost(_REMOTE, '/tools/find', { 'Level' : 'Patient', | |
| 1750 'CaseSensitive' : True, | |
| 1751 'Query' : { 'PatientName' : '*ne*' }}) | |
| 1752 self.assertEqual(0, len(a)) | |
| 1753 | |
| 1754 a = DoPost(_REMOTE, '/tools/find', { 'Level' : 'Study', | |
| 1755 'CaseSensitive' : True, | |
| 1756 'Query' : { 'PatientName' : '*NE*' }}) | |
| 1757 self.assertEqual(1, len(a)) | |
| 1758 | |
| 1759 a = DoPost(_REMOTE, '/tools/find', { 'Level' : 'Series', | |
| 1760 'CaseSensitive' : True, | |
| 1761 'Query' : { 'PatientName' : '*NE*' }}) | |
| 1762 self.assertEqual(2, len(a)) | |
| 1763 | |
| 1764 a = DoPost(_REMOTE, '/tools/find', { 'Level' : 'Instance', | |
| 1765 'CaseSensitive' : True, | |
| 1766 'Query' : { 'PatientName' : '*NE*' }}) | |
| 1767 self.assertEqual(4, len(a)) | |
| 1768 | |
| 1769 a = DoPost(_REMOTE, '/tools/find', { 'Level' : 'Patient', 'Query' : { }}) | |
| 1770 self.assertEqual(2, len(a)) | |
| 1771 | |
| 1772 a = DoPost(_REMOTE, '/tools/find', { 'Level' : 'Study', 'Query' : { }}) | |
| 1773 self.assertEqual(2, len(a)) | |
| 1774 | |
| 1775 a = DoPost(_REMOTE, '/tools/find', { 'Level' : 'Series', 'Query' : { }}) | |
| 1776 self.assertEqual(4, len(a)) | |
| 1777 | |
| 1778 a = DoPost(_REMOTE, '/tools/find', { 'Level' : 'Instance', 'Query' : { }}) | |
| 1779 self.assertEqual(8, len(a)) | |
| 1780 | |
|
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1781 a = DoPost(_REMOTE, '/tools/find', { 'Level' : 'Study', |
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1782 'Expand' : True, |
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1783 'Query' : { 'StudyDate' : '20061201-20061201' }}) |
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1784 self.assertEqual(1, len(a)) |
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1785 self.assertEqual('BRAINIX', a[0]['PatientMainDicomTags']['PatientName']) |
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1786 |
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1787 a = DoPost(_REMOTE, '/tools/find', { 'Level' : 'Study', |
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1788 'Expand' : True, |
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1789 'Query' : { 'StudyDate' : '20061201-20091201' }}) |
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1790 self.assertEqual(2, len(a)) |
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1791 for i in range(2): |
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1792 self.assertTrue(a[i]['PatientMainDicomTags']['PatientName'] in ['BRAINIX', 'KNEE']) |
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1793 |
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1794 a = DoPost(_REMOTE, '/tools/find', { 'Level' : 'Study', |
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1795 'Query' : { 'StudyDate' : '20061202-20061202' }}) |
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1796 self.assertEqual(0, len(a)) |
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1797 |
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1798 a = DoPost(_REMOTE, '/tools/find', { 'Level' : 'Study', |
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1799 'Expand' : True, |
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1800 'Query' : { 'StudyDate' : '-20061201' }}) |
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1801 self.assertEqual(1, len(a)) |
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1802 self.assertEqual('BRAINIX', a[0]['PatientMainDicomTags']['PatientName']) |
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1803 |
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1804 a = DoPost(_REMOTE, '/tools/find', { 'Level' : 'Study', |
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1805 'Expand' : True, |
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1806 'Query' : { 'StudyDate' : '-20051201' }}) |
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1807 self.assertEqual(0, len(a)) |
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1808 |
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1809 a = DoPost(_REMOTE, '/tools/find', { 'Level' : 'Study', |
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1810 'Expand' : True, |
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1811 'Query' : { 'StudyDate' : '20061201-' }}) |
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1812 self.assertEqual(2, len(a)) |
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1813 for i in range(2): |
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1814 self.assertTrue(a[i]['PatientMainDicomTags']['PatientName'] in ['BRAINIX', 'KNEE']) |
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1815 |
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1816 a = DoPost(_REMOTE, '/tools/find', { 'Level' : 'Study', |
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1817 'Expand' : True, |
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1818 'Query' : { 'StudyDate' : '20061202-' }}) |
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1819 self.assertEqual(1, len(a)) |
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1820 self.assertEqual('KNEE', a[0]['PatientMainDicomTags']['PatientName']) |
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1821 |
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1822 a = DoPost(_REMOTE, '/tools/find', { 'Level' : 'Study', |
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1823 'Expand' : True, |
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1824 'Query' : { 'StudyDate' : '20080819-' }}) |
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1825 self.assertEqual(1, len(a)) |
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1826 self.assertEqual('KNEE', a[0]['PatientMainDicomTags']['PatientName']) |
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1827 |
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1828 a = DoPost(_REMOTE, '/tools/find', { 'Level' : 'Study', |
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1829 'Expand' : True, |
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1830 'Query' : { 'StudyDate' : '20080820-' }}) |
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1831 self.assertEqual(0, len(a)) |
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1832 |
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1833 |
| 14 | 1834 |
| 1835 def test_rest_query_retrieve(self): | |
| 1836 self.assertEqual(0, len(DoGet(_REMOTE, '/patients'))) | |
| 1837 | |
| 1838 # Upload 8 instances | |
| 1839 for i in range(2): | |
| 1840 UploadInstance(_REMOTE, 'Brainix/Flair/IM-0001-000%d.dcm' % (i + 1)) | |
| 1841 UploadInstance(_REMOTE, 'Brainix/Epi/IM-0001-000%d.dcm' % (i + 1)) | |
| 1842 UploadInstance(_REMOTE, 'Knee/T1/IM-0001-000%d.dcm' % (i + 1)) | |
| 1843 UploadInstance(_REMOTE, 'Knee/T2/IM-0001-000%d.dcm' % (i + 1)) | |
| 1844 | |
| 1845 self.assertEqual(2, len(DoGet(_REMOTE, '/patients'))) | |
| 1846 for p in DoGet(_REMOTE, '/patients'): | |
| 1847 DoPost(_REMOTE, '/modalities/orthanctest/store', p) | |
| 1848 DoDelete(_REMOTE, '/patients/%s' % p) | |
| 1849 | |
| 1850 for q in DoGet(_REMOTE, '/queries'): | |
| 1851 DoDelete(_REMOTE, '/queries/%s' % q) | |
| 1852 | |
| 1853 self.assertEqual(0, len(DoGet(_REMOTE, '/patients'))) | |
| 1854 self.assertEqual(0, len(DoGet(_REMOTE, '/queries'))) | |
| 1855 a = DoPost(_REMOTE, '/modalities/orthanctest/query', { 'Level' : 'Series', | |
| 27 | 1856 'Query' : { |
| 1857 'PatientName' : '*NE*', | |
| 1858 'StudyDate' : '*', | |
| 1859 }})['ID'] | |
| 14 | 1860 self.assertEqual(1, len(DoGet(_REMOTE, '/queries'))) |
| 1861 | |
| 1862 b = DoGet(_REMOTE, '/queries/%s' % a) | |
| 1863 self.assertTrue('answers' in b) | |
| 1864 self.assertTrue('level' in b) | |
| 1865 self.assertTrue('modality' in b) | |
| 1866 self.assertTrue('query' in b) | |
| 1867 self.assertTrue('retrieve' in b) | |
| 1868 self.assertEqual('Series', DoGet(_REMOTE, '/queries/%s/level' % a)) | |
| 1869 self.assertEqual('orthanctest', DoGet(_REMOTE, '/queries/%s/modality' % a)) | |
| 1870 | |
| 1871 q = DoGet(_REMOTE, '/queries/%s/query?simplify' % a) | |
| 27 | 1872 self.assertEqual(2, len(q)) |
| 14 | 1873 self.assertTrue('PatientName' in q) |
| 27 | 1874 self.assertTrue('StudyDate' in q) |
| 14 | 1875 self.assertEqual('*NE*', q['PatientName']) |
| 27 | 1876 self.assertEqual('*', q['StudyDate']) |
| 14 | 1877 |
| 1878 self.assertEqual(2, len(DoGet(_REMOTE, '/queries/%s/answers' % a))) | |
| 1879 | |
| 1880 s = DoGet(_REMOTE, '/queries/%s/answers/0' % a) | |
| 1881 self.assertTrue('content' in s) | |
| 1882 self.assertTrue('retrieve' in s) | |
| 1883 | |
| 1884 s = DoGet(_REMOTE, '/queries/%s/answers/0/content?simplify' % a) | |
| 1885 self.assertEqual('887', s['PatientID']) | |
| 1886 self.assertEqual('2.16.840.1.113669.632.20.121711.10000160881', s['StudyInstanceUID']) | |
| 1887 | |
| 1888 self.assertEqual(0, len(DoGet(_REMOTE, '/patients'))) | |
| 1889 DoPost(_REMOTE, '/queries/%s/answers/0/retrieve' % a, 'ORTHANC') | |
| 1890 self.assertEqual(1, len(DoGet(_REMOTE, '/patients'))) | |
| 1891 self.assertEqual(1, len(DoGet(_REMOTE, '/studies'))) | |
| 1892 self.assertEqual(1, len(DoGet(_REMOTE, '/series'))) | |
| 1893 self.assertEqual(2, len(DoGet(_REMOTE, '/instances'))) | |
| 1894 | |
| 112 | 1895 DoPost(_REMOTE, '/queries/%s/answers/1/retrieve' % a, 'ORTHANC', 'application/json') # make sure the issue #36 is fixed (query/retrieve Rest API: /retrieve route shall accept application/json content type) |
| 14 | 1896 self.assertEqual(1, len(DoGet(_REMOTE, '/patients'))) |
| 1897 self.assertEqual(1, len(DoGet(_REMOTE, '/studies'))) | |
| 1898 self.assertEqual(2, len(DoGet(_REMOTE, '/series'))) | |
| 1899 self.assertEqual(4, len(DoGet(_REMOTE, '/instances'))) | |
| 1900 | |
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1901 # New in Orthanc 1.4.3 |
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1902 s = DoGet(_REMOTE, '/queries/%s/answers?expand&simplify' % a) |
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1903 self.assertEqual(2, len(s)) |
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1904 for i in range(2): |
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1905 self.assertEqual('SERIES', s[i]['QueryRetrieveLevel']) |
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1906 self.assertEqual('887', s[i]['PatientID']) |
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1907 self.assertEqual('2.16.840.1.113669.632.20.121711.10000160881', s[i]['StudyInstanceUID']) |
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1908 |
| 14 | 1909 DoDelete(_REMOTE, '/queries/%s' % a) |
| 1910 self.assertEqual(0, len(DoGet(_REMOTE, '/queries'))) | |
| 1911 | |
| 1912 | |
| 1913 def test_parent(self): | |
| 1914 u = UploadInstance(_REMOTE, 'DummyCT.dcm')['ID'] | |
| 1915 patient = '6816cb19-844d5aee-85245eba-28e841e6-2414fae2' | |
| 1916 study = 'b9c08539-26f93bde-c81ab0d7-bffaf2cb-a4d0bdd0' | |
| 1917 series = 'f2635388-f01d497a-15f7c06b-ad7dba06-c4c599fe' | |
| 1918 instance = '66a662ce-7430e543-bad44d47-0dc5a943-ec7a538d' | |
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1919 self.assertEqual(instance, u) |
| 14 | 1920 |
| 1921 a = DoGet(_REMOTE, '/studies/%s/patient' % study) | |
| 1922 self.assertEqual('Patient', a['Type']) | |
| 1923 self.assertEqual(patient, a['ID']) | |
| 1924 | |
| 1925 a = DoGet(_REMOTE, '/series/%s/patient' % series) | |
| 1926 self.assertEqual('Patient', a['Type']) | |
| 1927 self.assertEqual(patient, a['ID']) | |
| 1928 | |
| 1929 a = DoGet(_REMOTE, '/series/%s/study' % series) | |
| 1930 self.assertEqual('Study', a['Type']) | |
| 1931 self.assertEqual(study, a['ID']) | |
| 1932 | |
| 1933 a = DoGet(_REMOTE, '/instances/%s/patient' % instance) | |
| 1934 self.assertEqual('Patient', a['Type']) | |
| 1935 self.assertEqual(patient, a['ID']) | |
| 1936 | |
| 1937 a = DoGet(_REMOTE, '/instances/%s/study' % instance) | |
| 1938 self.assertEqual('Study', a['Type']) | |
| 1939 self.assertEqual(study, a['ID']) | |
| 1940 | |
| 1941 a = DoGet(_REMOTE, '/instances/%s/series' % instance) | |
| 1942 self.assertEqual('Series', a['Type']) | |
| 1943 self.assertEqual(series, a['ID']) | |
| 1944 | |
| 1945 | |
| 1946 def test_shanon(self): | |
| 1947 def Anonymize(instance, replacements = {}): | |
| 119 | 1948 return DoPost(_REMOTE, '/instances/%s/anonymize' % instance, { |
| 1949 'Replace' : replacements, | |
| 1950 'Force' : True, | |
| 1951 }, 'application/json') | |
| 14 | 1952 |
| 1953 self.assertEqual(0, len(DoGet(_REMOTE, '/instances'))) | |
| 1954 u = UploadInstance(_REMOTE, 'DummyCT.dcm')['ID'] | |
| 1955 self.assertEqual(1, len(DoGet(_REMOTE, '/instances'))) | |
| 1956 | |
| 1957 tags = [ 'PatientID', 'StudyInstanceUID', 'SeriesInstanceUID', 'SOPInstanceUID', 'DeidentificationMethod' ] | |
| 1958 ids = [ 'ozp00SjY2xG', | |
| 1959 '1.2.840.113619.2.176.2025.1499492.7391.1171285944.390', | |
| 1960 '1.2.840.113619.2.176.2025.1499492.7391.1171285944.394', | |
| 1961 '1.2.840.113619.2.176.2025.1499492.7040.1171286242.109' ] | |
| 1962 | |
| 1963 a = ExtractDicomTags(Anonymize(u), tags) | |
| 1964 for i in range(4): | |
| 1965 self.assertNotEqual(ids[i], a[i]) | |
| 1966 self.assertTrue(a[4].startswith('Orthanc')) | |
| 1967 | |
| 1968 a = ExtractDicomTags(Anonymize(u, { 'PatientName' : 'toto' }), tags) | |
| 1969 for i in range(4): | |
| 1970 self.assertNotEqual(ids[i], a[i]) | |
| 1971 self.assertFalse(a[4].startswith('Orthanc')) | |
| 1972 | |
| 1973 a = ExtractDicomTags(Anonymize(u, { 'SOPInstanceUID' : 'instance' }), tags) | |
| 1974 self.assertEqual('instance', a[3]) | |
| 1975 self.assertFalse(a[4].startswith('Orthanc')) | |
| 1976 | |
| 1977 a = ExtractDicomTags(Anonymize(u, { 'SeriesInstanceUID' : 'series' }), tags) | |
| 1978 self.assertEqual('series', a[2]) | |
| 1979 self.assertFalse(a[4].startswith('Orthanc')) | |
| 1980 | |
| 1981 a = ExtractDicomTags(Anonymize(u, { 'StudyInstanceUID' : 'study' }), tags) | |
| 1982 self.assertEqual('study', a[1]) | |
| 1983 self.assertFalse(a[4].startswith('Orthanc')) | |
| 1984 | |
| 1985 a = ExtractDicomTags(Anonymize(u, { 'PatientID' : 'patient' }), tags) | |
| 1986 self.assertEqual('patient', a[0]) | |
| 1987 self.assertFalse(a[4].startswith('Orthanc')) | |
| 1988 | |
| 1989 a = ExtractDicomTags(Anonymize(u, { 'PatientID' : 'patient', | |
| 1990 'StudyInstanceUID' : 'study', | |
| 1991 'SeriesInstanceUID' : 'series', | |
| 1992 'SOPInstanceUID' : 'instance' }), tags) | |
| 1993 self.assertEqual('patient', a[0]) | |
| 1994 self.assertFalse(a[4].startswith('Orthanc')) | |
| 1995 | |
| 1996 self.assertEqual(1, len(DoGet(_REMOTE, '/instances'))) | |
| 1997 | |
| 1998 | |
| 1999 def test_shanon_2(self): | |
| 2000 def Modify(instance, replacements = {}): | |
| 119 | 2001 return DoPost(_REMOTE, '/instances/%s/modify' % instance, { |
| 2002 'Replace' : replacements, | |
| 2003 'Force': True, | |
| 2004 }, 'application/json') | |
| 14 | 2005 |
| 2006 self.assertEqual(0, len(DoGet(_REMOTE, '/instances'))) | |
| 2007 u = UploadInstance(_REMOTE, 'DummyCT.dcm')['ID'] | |
| 2008 self.assertEqual(1, len(DoGet(_REMOTE, '/instances'))) | |
| 2009 | |
| 2010 tags = [ 'PatientID', 'StudyInstanceUID', 'SeriesInstanceUID', 'SOPInstanceUID', 'DeidentificationMethod' ] | |
| 2011 ids = [ 'ozp00SjY2xG', | |
| 2012 '1.2.840.113619.2.176.2025.1499492.7391.1171285944.390', | |
| 2013 '1.2.840.113619.2.176.2025.1499492.7391.1171285944.394', | |
| 2014 '1.2.840.113619.2.176.2025.1499492.7040.1171286242.109' ] | |
| 2015 | |
| 2016 a = ExtractDicomTags(Modify(u), tags) | |
| 2017 self.assertEqual(ids[0], a[0]) | |
| 2018 self.assertEqual(ids[1], a[1]) | |
| 2019 self.assertEqual(ids[2], a[2]) | |
| 2020 self.assertNotEqual(ids[3], a[3]) | |
| 2021 self.assertEqual(0, len(a[4])) | |
| 2022 | |
| 2023 a = ExtractDicomTags(Modify(u, { 'SOPInstanceUID' : 'instance' }), tags) | |
| 2024 self.assertEqual(ids[0], a[0]) | |
| 2025 self.assertEqual(ids[1], a[1]) | |
| 2026 self.assertEqual(ids[2], a[2]) | |
| 2027 self.assertEqual('instance', a[3]) | |
| 2028 | |
| 2029 a = ExtractDicomTags(Modify(u, { 'SeriesInstanceUID' : 'series' }), tags) | |
| 2030 self.assertEqual(ids[0], a[0]) | |
| 2031 self.assertEqual(ids[1], a[1]) | |
| 2032 self.assertEqual('series', a[2]) | |
| 2033 self.assertNotEqual(ids[3], a[3]) | |
| 2034 | |
| 2035 a = ExtractDicomTags(Modify(u, { 'StudyInstanceUID' : 'study' }), tags) | |
| 2036 self.assertEqual(ids[0], a[0]) | |
| 2037 self.assertEqual('study', a[1]) | |
| 2038 self.assertNotEqual(ids[2], a[2]) | |
| 2039 self.assertNotEqual(ids[3], a[3]) | |
| 2040 | |
| 2041 a = ExtractDicomTags(Modify(u, { 'PatientID' : 'patient' }), tags) | |
| 2042 self.assertEqual('patient', a[0]) | |
| 2043 self.assertNotEqual(ids[1], a[1]) | |
| 2044 self.assertNotEqual(ids[2], a[2]) | |
| 2045 self.assertNotEqual(ids[3], a[3]) | |
| 2046 | |
| 2047 a = ExtractDicomTags(Modify(u, { 'PatientID' : 'patient', | |
| 2048 'StudyInstanceUID' : 'study', | |
| 2049 'SeriesInstanceUID' : 'series', | |
| 2050 'SOPInstanceUID' : 'instance' }), tags) | |
| 2051 self.assertEqual('patient', a[0]) | |
| 2052 self.assertEqual('study', a[1]) | |
| 2053 self.assertEqual('series', a[2]) | |
| 2054 self.assertEqual('instance', a[3]) | |
| 2055 | |
| 2056 self.assertEqual(1, len(DoGet(_REMOTE, '/instances'))) | |
| 2057 | |
| 2058 | |
| 2059 def test_instances_tags(self): | |
| 2060 a = UploadInstance(_REMOTE, 'Knee/T1/IM-0001-0001.dcm')['ID'] | |
| 2061 b = UploadInstance(_REMOTE, 'Knee/T2/IM-0001-0001.dcm')['ID'] | |
| 2062 #a = UploadInstance(_REMOTE, 'Cardiac/MR.X.1.2.276.0.7230010.3.1.4.2831157719.2256.1336386937.676343')['ID'] | |
| 2063 #b = UploadInstance(_REMOTE, 'Cardiac/MR.X.1.2.276.0.7230010.3.1.4.2831157719.2256.1336386925.676329')['ID'] | |
| 2064 | |
| 2065 i = DoGet(_REMOTE, '/patients/%s/instances-tags?simplify' % DoGet(_REMOTE, '/patients')[0]) | |
| 2066 self.assertEqual(2, len(i)) | |
| 2067 self.assertEqual('887', i[i.keys()[0]]['PatientID']) | |
| 2068 self.assertEqual('887', i[i.keys()[1]]['PatientID']) | |
| 2069 | |
| 2070 i = DoGet(_REMOTE, '/patients/%s/instances-tags?simplify' % DoGet(_REMOTE, '/studies')[0]) | |
| 2071 self.assertEqual(2, len(i)) | |
| 2072 self.assertEqual('887', i[i.keys()[0]]['PatientID']) | |
| 2073 self.assertEqual('887', i[i.keys()[1]]['PatientID']) | |
| 2074 | |
| 2075 self.assertEqual(2, len(DoGet(_REMOTE, '/series'))) | |
| 2076 i = DoGet(_REMOTE, '/patients/%s/instances-tags?simplify' % DoGet(_REMOTE, '/series')[0]) | |
| 2077 self.assertEqual(1, len(i)) | |
| 2078 self.assertEqual('887', i[i.keys()[0]]['PatientID']) | |
| 2079 | |
| 2080 i = DoGet(_REMOTE, '/patients/%s/instances-tags?simplify' % DoGet(_REMOTE, '/series')[1]) | |
| 2081 self.assertEqual(1, len(i)) | |
| 2082 self.assertEqual('887', i[i.keys()[0]]['PatientID']) | |
| 2083 | |
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2084 i = DoGet(_REMOTE, '/patients/%s/instances-tags?short' % DoGet(_REMOTE, '/series')[1]) |
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2085 self.assertEqual(1, len(i)) |
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2086 self.assertEqual('887', i[i.keys()[0]]['0010,0020']) |
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2087 |
| 14 | 2088 |
| 2089 def test_lookup(self): | |
| 2090 a = DoPost(_REMOTE, '/tools/lookup', 'ozp00SjY2xG') | |
| 2091 self.assertEqual(0, len(a)) | |
| 2092 | |
| 2093 UploadInstance(_REMOTE, 'DummyCT.dcm') | |
| 2094 | |
| 2095 a = DoPost(_REMOTE, '/tools/lookup', 'ozp00SjY2xG') | |
| 2096 self.assertEqual(1, len(a)) | |
| 2097 self.assertEqual('Patient', a[0]['Type']) | |
| 2098 self.assertEqual('6816cb19-844d5aee-85245eba-28e841e6-2414fae2', a[0]['ID']) | |
| 2099 self.assertEqual('/patients/%s' % a[0]['ID'], a[0]['Path']) | |
| 2100 | |
| 2101 a = DoPost(_REMOTE, '/tools/lookup', '1.2.840.113619.2.176.2025.1499492.7391.1171285944.390') | |
| 2102 self.assertEqual(1, len(a)) | |
| 2103 self.assertEqual('Study', a[0]['Type']) | |
| 2104 self.assertEqual('b9c08539-26f93bde-c81ab0d7-bffaf2cb-a4d0bdd0', a[0]['ID']) | |
| 2105 self.assertEqual('/studies/%s' % a[0]['ID'], a[0]['Path']) | |
| 2106 | |
| 2107 a = DoPost(_REMOTE, '/tools/lookup', '1.2.840.113619.2.176.2025.1499492.7391.1171285944.394') | |
| 2108 self.assertEqual(1, len(a)) | |
| 2109 self.assertEqual('Series', a[0]['Type']) | |
| 2110 self.assertEqual('f2635388-f01d497a-15f7c06b-ad7dba06-c4c599fe', a[0]['ID']) | |
| 2111 self.assertEqual('/series/%s' % a[0]['ID'], a[0]['Path']) | |
| 2112 | |
| 2113 a = DoPost(_REMOTE, '/tools/lookup', '1.2.840.113619.2.176.2025.1499492.7040.1171286242.109') | |
| 2114 self.assertEqual(1, len(a)) | |
| 2115 self.assertEqual('Instance', a[0]['Type']) | |
| 2116 self.assertEqual('66a662ce-7430e543-bad44d47-0dc5a943-ec7a538d', a[0]['ID']) | |
| 2117 self.assertEqual('/instances/%s' % a[0]['ID'], a[0]['Path']) | |
| 2118 | |
| 2119 DropOrthanc(_REMOTE) | |
| 2120 a = DoPost(_REMOTE, '/tools/lookup', '3113719P') | |
| 2121 self.assertEqual(0, len(a)) | |
| 2122 | |
| 15 | 2123 |
| 2124 def test_autorouting(self): | |
| 2125 knee1 = 'Knee/T1/IM-0001-0001.dcm' | |
| 2126 knee2 = 'Knee/T2/IM-0001-0002.dcm' | |
| 2127 other = 'Brainix/Flair/IM-0001-0001.dcm' | |
| 2128 | |
| 2129 # Check that this version is >= 0.8.0 | |
| 2130 self.assertTrue(IsDefinedInLua(_REMOTE, '_InitializeJob')) | |
| 2131 self.assertTrue('orthanctest' in DoGet(_REMOTE, '/modalities')) | |
| 2132 | |
| 2133 UploadInstance(_REMOTE, knee1) | |
| 2134 self.assertEqual(0, len(DoGet(_LOCAL, '/instances'))) | |
| 2135 | |
| 2136 DropOrthanc(_REMOTE) | |
| 2137 DropOrthanc(_LOCAL) | |
| 174 | 2138 InstallLuaScriptFromPath(_REMOTE, 'Lua/Autorouting.lua') |
| 15 | 2139 UploadInstance(_REMOTE, knee1) |
| 2140 UploadInstance(_REMOTE, knee2) | |
| 2141 UploadInstance(_REMOTE, other) | |
| 2142 WaitEmpty(_REMOTE) | |
| 174 | 2143 UninstallLuaCallbacks(_REMOTE) |
| 15 | 2144 self.assertEqual(3, len(DoGet(_LOCAL, '/instances'))) |
| 2145 | |
| 2146 DropOrthanc(_REMOTE) | |
| 2147 DropOrthanc(_LOCAL) | |
| 174 | 2148 InstallLuaScriptFromPath(_REMOTE, 'Lua/AutoroutingConditional.lua') |
| 15 | 2149 UploadInstance(_REMOTE, knee1) |
| 2150 UploadInstance(_REMOTE, knee2) | |
| 2151 UploadInstance(_REMOTE, other) | |
| 2152 WaitEmpty(_REMOTE) | |
| 174 | 2153 UninstallLuaCallbacks(_REMOTE) |
| 15 | 2154 self.assertEqual(2, len(DoGet(_LOCAL, '/instances'))) |
| 2155 | |
| 2156 DropOrthanc(_REMOTE) | |
| 2157 DropOrthanc(_LOCAL) | |
| 174 | 2158 InstallLuaScriptFromPath(_REMOTE, 'Lua/AutoroutingModification.lua') |
| 15 | 2159 UploadInstance(_REMOTE, knee1) |
| 2160 WaitEmpty(_REMOTE) | |
| 174 | 2161 UninstallLuaCallbacks(_REMOTE) |
| 15 | 2162 i = DoGet(_LOCAL, '/instances') |
| 2163 self.assertEqual(1, len(i)) | |
| 2164 | |
| 2165 with tempfile.NamedTemporaryFile(delete = True) as f: | |
| 2166 f.write(DoGet(_LOCAL, '/instances/%s/file' % i[0])) | |
| 2167 f.flush() | |
| 45 | 2168 routed = subprocess.check_output([ FindExecutable('dcm2xml'), f.name ]) |
| 15 | 2169 self.assertEqual('My Medical Device', re.search('"StationName">(.*?)<', routed).group(1).strip()) |
| 2170 self.assertEqual(None, re.search('"MilitaryRank"', routed)) | |
| 2171 self.assertEqual(None, re.search('"0051,0010"', routed)) # A private tag | |
| 17 | 2172 |
| 2173 | |
| 2174 def test_storescu_rf(self): | |
| 2175 i = UploadInstance(_REMOTE, 'KarstenHilbertRF.dcm')['ID'] | |
| 2176 self.assertEqual(0, len(DoGet(_LOCAL, '/instances'))) | |
| 2177 j = DoPost(_REMOTE, '/modalities/orthanctest/store', str(i), 'text/plain') | |
| 2178 self.assertEqual(1, len(DoGet(_LOCAL, '/instances'))) | |
| 18 | 2179 |
| 2180 | |
| 2181 def test_anonymize_instance(self): | |
| 2182 def AnonymizeAndUpload(instanceId, parameters): | |
| 2183 return DoPost(_REMOTE, '/instances', DoPost(_REMOTE, '/instances/%s/anonymize' % instanceId, parameters, | |
| 2184 'application/json'), 'application/dicom')['ID'] | |
| 2185 | |
| 2186 def ModifyAndUpload(instanceId, parameters): | |
| 2187 return DoPost(_REMOTE, '/instances', DoPost(_REMOTE, '/instances/%s/modify' % instanceId, parameters, | |
| 2188 'application/json'), 'application/dicom')['ID'] | |
| 2189 | |
| 2190 a = UploadInstance(_REMOTE, 'PrivateMDNTags.dcm')['ID'] | |
| 2191 s1 = DoGet(_REMOTE, '/instances/%s/content/PatientName' % a) | |
| 2192 s2 = DoGet(_REMOTE, '/instances/%s/content/00e1-10c2' % a) # Some private tag | |
| 2193 s3 = DoGet(_REMOTE, '/instances/%s/content/StudyDescription' % a) | |
| 2194 s4 = DoGet(_REMOTE, '/instances/%s/content/SeriesDescription' % a) | |
| 2195 s5 = DoGet(_REMOTE, '/instances/%s/content/InstitutionName' % a) | |
| 2196 | |
| 2197 b = AnonymizeAndUpload(a, '{}') | |
| 2198 self.assertNotEqual(s1, DoGet(_REMOTE, '/instances/%s/content/PatientName' % b)) | |
| 2199 self.assertRaises(Exception, lambda: DoGet(_REMOTE, '/instances/%s/content/00e1-10c2' % b)) | |
| 2200 | |
| 2201 # Keep private tag (only OK since Orthanc 0.8.0) | |
| 2202 b = AnonymizeAndUpload(a, '{"Keep":["00e1-10c2"]}') | |
| 2203 self.assertNotEqual(s1, DoGet(_REMOTE, '/instances/%s/content/PatientName' % b)) | |
| 2204 self.assertEqual(s2, DoGet(_REMOTE, '/instances/%s/content/00e1-10c2' % b)) | |
| 2205 | |
| 2206 b = AnonymizeAndUpload(a, '{"Keep":["00e1,10c2","PatientName"]}') | |
| 2207 self.assertEqual(s1, DoGet(_REMOTE, '/instances/%s/content/PatientName' % b)) | |
| 2208 self.assertEqual(s2, DoGet(_REMOTE, '/instances/%s/content/00e1-10c2' % b)) | |
| 2209 | |
| 2210 b = AnonymizeAndUpload(a, '{"Keep":["PatientName"],"Replace":{"00e1,10c2":"Hello"}}') | |
| 2211 self.assertEqual(s1, DoGet(_REMOTE, '/instances/%s/content/PatientName' % b)) | |
| 2212 self.assertTrue(DoGet(_REMOTE, '/instances/%s/content/00e1-10c2' % b).startswith('Hello')) | |
| 2213 | |
| 2214 # Examples from the Wiki | |
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2215 b = AnonymizeAndUpload(a, '{"Replace":{"PatientName":"hello","0010-0020":"world"},"Keep":["StudyDescription", "SeriesDescription"],"KeepPrivateTags": true,"Force":true}') |
| 18 | 2216 self.assertEqual('hello', DoGet(_REMOTE, '/instances/%s/content/0010-0010' % b).strip()) |
| 2217 self.assertEqual('world', DoGet(_REMOTE, '/instances/%s/content/PatientID' % b).strip()) | |
| 2218 self.assertEqual(s3, DoGet(_REMOTE, '/instances/%s/content/0008,1030' % b)) | |
| 2219 self.assertEqual(s4, DoGet(_REMOTE, '/instances/%s/content/0008,103e' % b)) | |
| 2220 self.assertEqual(s4, DoGet(_REMOTE, '/instances/%s/content/0008-103E' % b)) | |
| 2221 self.assertEqual(s2, DoGet(_REMOTE, '/instances/%s/content/00e1-10c2' % b)) | |
| 2222 DoGet(_REMOTE, '/instances/%s/content/InstitutionName' % a) | |
| 2223 self.assertRaises(Exception, lambda: DoGet(_REMOTE, '/instances/%s/content/InstitutionName' % b)) | |
| 2224 | |
|
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|
2225 b = ModifyAndUpload(a, '{"Replace":{"PatientName":"hello","PatientID":"world"},"Remove":["InstitutionName"],"RemovePrivateTags": true,"Force":true}') |
| 18 | 2226 self.assertEqual('hello', DoGet(_REMOTE, '/instances/%s/content/0010-0010' % b).strip()) |
| 2227 self.assertEqual('world', DoGet(_REMOTE, '/instances/%s/content/PatientID' % b).strip()) | |
| 2228 self.assertEqual(s3, DoGet(_REMOTE, '/instances/%s/content/0008,1030' % b)) | |
| 2229 self.assertEqual(s4, DoGet(_REMOTE, '/instances/%s/content/0008,103e' % b)) | |
| 2230 self.assertRaises(Exception, lambda: DoGet(_REMOTE, '/instances/%s/content/00e1-10c2' % b)) | |
| 2231 self.assertRaises(Exception, lambda: DoGet(_REMOTE, '/instances/%s/content/InstitutionName' % b)) | |
| 2232 | |
|
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117
diff
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|
2233 b = ModifyAndUpload(a, '{"Replace":{"PatientName":"hello","PatientID":"world"},"Force":true}') |
| 18 | 2234 self.assertEqual('hello', DoGet(_REMOTE, '/instances/%s/content/0010-0010' % b).strip()) |
| 2235 self.assertEqual('world', DoGet(_REMOTE, '/instances/%s/content/PatientID' % b).strip()) | |
| 2236 self.assertEqual(s2, DoGet(_REMOTE, '/instances/%s/content/00e1,10c2' % b)) | |
| 2237 self.assertEqual(s3, DoGet(_REMOTE, '/instances/%s/content/0008,1030' % b)) | |
| 2238 self.assertEqual(s4, DoGet(_REMOTE, '/instances/%s/content/0008-103E' % b)) | |
| 2239 self.assertEqual(s5, DoGet(_REMOTE, '/instances/%s/content/InstitutionName' % b)) | |
| 2240 | |
| 2241 | |
| 2242 # Test modify non-existing | |
| 2243 i = DoPost(_REMOTE, '/tools/create-dicom', | |
| 2244 json.dumps({ | |
| 2245 'PatientName' : 'Jodogne', | |
| 2246 'Modality' : 'CT', | |
| 2247 }))['ID'] | |
| 2248 | |
| 2249 self.assertEqual('Jodogne', DoGet(_REMOTE, '/instances/%s/content/PatientName' % i).strip()) | |
| 2250 self.assertRaises(Exception, lambda: DoGet(_REMOTE, '/instances/%s/content/StudyDescription' % i)) | |
| 2251 self.assertEqual('CT', DoGet(_REMOTE, '/instances/%s/content/Modality' % i).strip()) | |
| 2252 | |
| 2253 b = ModifyAndUpload(i, '{"Replace":{"StudyDescription":"hello","Modality":"world"}}') | |
| 2254 self.assertEqual('Jodogne', DoGet(_REMOTE, '/instances/%s/content/PatientName' % b).strip()) | |
| 2255 self.assertEqual('hello', DoGet(_REMOTE, '/instances/%s/content/StudyDescription' % b).strip()) | |
| 2256 self.assertEqual('world', DoGet(_REMOTE, '/instances/%s/content/Modality' % b).strip()) | |
| 2257 | |
|
21
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|
2258 |
|
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diff
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|
2259 def test_incoming_jpeg(self): |
|
61
967d44407308
test UnknownSopClassAccepted option
Sebastien Jodogne <s.jodogne@gmail.com>
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60
diff
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|
2260 def storescu(image, acceptUnknownSopClassUid): |
|
967d44407308
test UnknownSopClassAccepted option
Sebastien Jodogne <s.jodogne@gmail.com>
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60
diff
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|
2261 if acceptUnknownSopClassUid: |
|
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test UnknownSopClassAccepted option
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60
diff
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|
2262 tmp = [ '-xf', GetDatabasePath('UnknownSopClassUid.cfg'), 'Default' ] |
|
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test UnknownSopClassAccepted option
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60
diff
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|
2263 else: |
|
967d44407308
test UnknownSopClassAccepted option
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
60
diff
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|
2264 tmp = [ '-xs' ] |
|
967d44407308
test UnknownSopClassAccepted option
Sebastien Jodogne <s.jodogne@gmail.com>
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60
diff
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|
2265 |
|
21
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18
diff
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|
2266 with open(os.devnull, 'w') as FNULL: |
|
61
967d44407308
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Sebastien Jodogne <s.jodogne@gmail.com>
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60
diff
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|
2267 subprocess.check_call([ FindExecutable('storescu') ] + tmp + |
|
967d44407308
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Sebastien Jodogne <s.jodogne@gmail.com>
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60
diff
changeset
|
2268 [ _REMOTE['Server'], str(_REMOTE['DicomPort']), |
|
967d44407308
test UnknownSopClassAccepted option
Sebastien Jodogne <s.jodogne@gmail.com>
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60
diff
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|
2269 GetDatabasePath(image) ], |
|
21
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18
diff
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|
2270 stderr = FNULL) |
|
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18
diff
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|
2271 |
|
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18
diff
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|
2272 self.assertEqual(0, len(DoGet(_REMOTE, '/patients'))) |
| 174 | 2273 InstallLuaScriptFromPath(_REMOTE, 'Lua/TransferSyntaxDisable.lua') |
|
61
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60
diff
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|
2274 self.assertRaises(Exception, lambda: storescu('Knix/Loc/IM-0001-0001.dcm', False)) |
|
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60
diff
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|
2275 self.assertRaises(Exception, lambda: storescu('UnknownSopClassUid.dcm', True)) |
|
21
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18
diff
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|
2276 self.assertEqual(0, len(DoGet(_REMOTE, '/patients'))) |
| 174 | 2277 InstallLuaScriptFromPath(_REMOTE, 'Lua/TransferSyntaxEnable.lua') |
|
62
f9c4ce95756f
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Sebastien Jodogne <s.jodogne@gmail.com>
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61
diff
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|
2278 DoPost(_REMOTE, '/tools/execute-script', "print('All special transfer syntaxes are now accepted')") |
|
61
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Sebastien Jodogne <s.jodogne@gmail.com>
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60
diff
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|
2279 storescu('Knix/Loc/IM-0001-0001.dcm', False) |
|
967d44407308
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Sebastien Jodogne <s.jodogne@gmail.com>
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60
diff
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|
2280 storescu('UnknownSopClassUid.dcm', True) |
|
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Sebastien Jodogne <s.jodogne@gmail.com>
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60
diff
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|
2281 self.assertEqual(2, len(DoGet(_REMOTE, '/patients'))) |
|
21
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Sebastien Jodogne <s.jodogne@gmail.com>
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diff
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|
2282 |
|
2a29bcff60a7
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Sebastien Jodogne <s.jodogne@gmail.com>
parents:
18
diff
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|
2283 |
|
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Sebastien Jodogne <s.jodogne@gmail.com>
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18
diff
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|
2284 def test_storescu_jpeg(self): |
|
2a29bcff60a7
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parents:
18
diff
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|
2285 self.assertEqual(0, len(DoGet(_REMOTE, '/exports')['Exports'])) |
|
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Sebastien Jodogne <s.jodogne@gmail.com>
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18
diff
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|
2286 |
|
2a29bcff60a7
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Sebastien Jodogne <s.jodogne@gmail.com>
parents:
18
diff
changeset
|
2287 knixStudy = 'b9c08539-26f93bde-c81ab0d7-bffaf2cb-a4d0bdd0' |
| 64 | 2288 i = UploadInstance(_REMOTE, 'Knix/Loc/IM-0001-0001.dcm')['ID'] |
| 2289 | |
| 2290 # This is JPEG lossless | |
|
136
5634ef96fcc5
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diff
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|
2291 self.assertEqual('1.2.840.10008.1.2.4.70', DoGet(_REMOTE, '/instances/%s/header' % i)['0002,0010']['Value']) |
| 64 | 2292 self.assertEqual('1.2.840.10008.1.2.4.70', DoGet(_REMOTE, '/instances/%s/header?simplify' % i)['TransferSyntaxUID']) |
|
136
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diff
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|
2293 self.assertEqual('1.2.840.10008.1.2.4.70', DoGet(_REMOTE, '/instances/%s/header?short' % i)['0002,0010']) |
| 64 | 2294 |
|
21
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Sebastien Jodogne <s.jodogne@gmail.com>
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18
diff
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|
2295 UploadInstance(_REMOTE, 'Knix/Loc/IM-0001-0002.dcm') |
|
2a29bcff60a7
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Sebastien Jodogne <s.jodogne@gmail.com>
parents:
18
diff
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|
2296 UploadInstance(_REMOTE, 'Knix/Loc/IM-0001-0003.dcm') |
|
2a29bcff60a7
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Sebastien Jodogne <s.jodogne@gmail.com>
parents:
18
diff
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|
2297 |
|
2a29bcff60a7
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Sebastien Jodogne <s.jodogne@gmail.com>
parents:
18
diff
changeset
|
2298 a = UploadInstance(_REMOTE, 'Brainix/Flair/IM-0001-0001.dcm')['ID'] |
|
2a29bcff60a7
tests of image decoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
18
diff
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|
2299 b = UploadInstance(_REMOTE, 'ColorTestImageJ.dcm')['ID'] |
|
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Sebastien Jodogne <s.jodogne@gmail.com>
parents:
18
diff
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|
2300 self.assertEqual(0, len(DoGet(_LOCAL, '/instances'))) |
|
2a29bcff60a7
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parents:
18
diff
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|
2301 DoPost(_REMOTE, '/modalities/orthanctest/store', [ knixStudy, a, b ]) |
|
2a29bcff60a7
tests of image decoding
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parents:
18
diff
changeset
|
2302 self.assertEqual(5, len(DoGet(_LOCAL, '/instances'))) |
|
2a29bcff60a7
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parents:
18
diff
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|
2303 |
|
2a29bcff60a7
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Sebastien Jodogne <s.jodogne@gmail.com>
parents:
18
diff
changeset
|
2304 self.assertEqual(3, len(DoGet(_REMOTE, '/exports')['Exports'])) |
|
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Sebastien Jodogne <s.jodogne@gmail.com>
parents:
18
diff
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|
2305 |
|
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Sebastien Jodogne <s.jodogne@gmail.com>
parents:
18
diff
changeset
|
2306 DropOrthanc(_REMOTE) |
|
2a29bcff60a7
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Sebastien Jodogne <s.jodogne@gmail.com>
parents:
18
diff
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|
2307 self.assertEqual(0, len(DoGet(_REMOTE, '/exports')['Exports'])) |
|
2a29bcff60a7
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Sebastien Jodogne <s.jodogne@gmail.com>
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18
diff
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|
2308 |
|
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Sebastien Jodogne <s.jodogne@gmail.com>
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18
diff
changeset
|
2309 |
|
2a29bcff60a7
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Sebastien Jodogne <s.jodogne@gmail.com>
parents:
18
diff
changeset
|
2310 def test_pixel_data(self): |
|
2a29bcff60a7
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Sebastien Jodogne <s.jodogne@gmail.com>
parents:
18
diff
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|
2311 jpeg = UploadInstance(_REMOTE, 'Knix/Loc/IM-0001-0001.dcm')['ID'] |
|
2a29bcff60a7
tests of image decoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
18
diff
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|
2312 color = UploadInstance(_REMOTE, 'ColorTestImageJ.dcm')['ID'] |
|
2a29bcff60a7
tests of image decoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
18
diff
changeset
|
2313 phenix = UploadInstance(_REMOTE, 'Phenix/IM-0001-0001.dcm')['ID'] |
|
2a29bcff60a7
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Sebastien Jodogne <s.jodogne@gmail.com>
parents:
18
diff
changeset
|
2314 |
|
2a29bcff60a7
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Sebastien Jodogne <s.jodogne@gmail.com>
parents:
18
diff
changeset
|
2315 phenixSize = 358 * 512 * 2 |
|
2a29bcff60a7
tests of image decoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
18
diff
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|
2316 colorSize = 1000 * 1000 * 3 |
|
2a29bcff60a7
tests of image decoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
18
diff
changeset
|
2317 jpegSize = 51918 |
|
2a29bcff60a7
tests of image decoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
18
diff
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|
2318 |
|
2a29bcff60a7
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Sebastien Jodogne <s.jodogne@gmail.com>
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18
diff
changeset
|
2319 self.assertEqual(1, len(DoGet(_REMOTE, '/instances/%s/content/7fe0-0010' % phenix))) |
|
2a29bcff60a7
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Sebastien Jodogne <s.jodogne@gmail.com>
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18
diff
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|
2320 self.assertEqual(1, len(DoGet(_REMOTE, '/instances/%s/content/7fe0-0010' % color))) |
|
2a29bcff60a7
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Sebastien Jodogne <s.jodogne@gmail.com>
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18
diff
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|
2321 self.assertEqual(2, len(DoGet(_REMOTE, '/instances/%s/content/7fe0-0010' % jpeg))) |
|
2a29bcff60a7
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diff
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|
2322 |
|
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18
diff
changeset
|
2323 self.assertEqual(0, len(DoGet(_REMOTE, '/instances/%s/content/7fe0-0010/0' % jpeg))) |
|
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18
diff
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|
2324 self.assertEqual(jpegSize, len(DoGet(_REMOTE, '/instances/%s/content/7fe0-0010/1' % jpeg))) |
|
2a29bcff60a7
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diff
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|
2325 |
|
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18
diff
changeset
|
2326 self.assertEqual(phenixSize, len(DoGet(_REMOTE, '/instances/%s/content/7fe0-0010/0' % phenix))) |
|
2a29bcff60a7
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diff
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|
2327 self.assertEqual(colorSize, len(DoGet(_REMOTE, '/instances/%s/content/7fe0-0010/0' % color))) |
|
2a29bcff60a7
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|
2328 |
|
2a29bcff60a7
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diff
changeset
|
2329 |
|
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Sebastien Jodogne <s.jodogne@gmail.com>
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18
diff
changeset
|
2330 def test_decode_brainix(self): |
|
2a29bcff60a7
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18
diff
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|
2331 brainix = [ |
|
2a29bcff60a7
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diff
changeset
|
2332 UploadInstance(_REMOTE, 'Brainix/Epi/IM-0001-0001.dcm')['ID'], # (*) |
|
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Sebastien Jodogne <s.jodogne@gmail.com>
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diff
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|
2333 UploadInstance(_REMOTE, 'Formats/JpegLossless.dcm')['ID'], # JPEG-LS, same as (*) (since Orthanc 0.7.6) |
|
2a29bcff60a7
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|
2334 UploadInstance(_REMOTE, 'Formats/Jpeg.dcm')['ID'], # JPEG, same as (*) (since Orthanc 0.7.6) |
|
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|
2335 ] |
|
2a29bcff60a7
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Sebastien Jodogne <s.jodogne@gmail.com>
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18
diff
changeset
|
2336 h = '6fb11b932d535c2be04beabd99793ff8' |
|
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|
2337 maxValue = 426.0 |
|
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|
2338 |
|
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diff
changeset
|
2339 truth = Image.open(GetDatabasePath('Formats/Brainix.png')) |
|
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Sebastien Jodogne <s.jodogne@gmail.com>
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|
2340 for i in brainix: |
|
2a29bcff60a7
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diff
changeset
|
2341 self.AssertSameImages(truth.getdata(), '/instances/%s/image-int16' % i) |
|
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diff
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|
2342 self.AssertSameImages(truth.getdata(), '/instances/%s/image-uint16' % i) |
|
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changeset
|
2343 |
|
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|
2344 truth2 = map(lambda x: min(255, x), truth.getdata()) |
|
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|
2345 for i in brainix: |
|
2a29bcff60a7
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18
diff
changeset
|
2346 self.AssertSameImages(truth2, '/instances/%s/image-uint8' % i) |
|
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|
2347 |
|
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diff
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|
2348 truth2 = map(lambda x: x * 255.0 / maxValue, truth.getdata()) |
|
2a29bcff60a7
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changeset
|
2349 for i in brainix: |
|
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changeset
|
2350 self.AssertSameImages(truth2, '/instances/%s/preview' % i) |
|
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parents:
18
diff
changeset
|
2351 |
|
2a29bcff60a7
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Sebastien Jodogne <s.jodogne@gmail.com>
parents:
18
diff
changeset
|
2352 for i in brainix: |
|
2a29bcff60a7
tests of image decoding
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parents:
18
diff
changeset
|
2353 self.assertEqual(h, ComputeMD5(DoGet(_REMOTE, '/instances/%s/matlab' % i))) |
|
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parents:
18
diff
changeset
|
2354 |
|
2a29bcff60a7
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Sebastien Jodogne <s.jodogne@gmail.com>
parents:
18
diff
changeset
|
2355 |
|
2a29bcff60a7
tests of image decoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
18
diff
changeset
|
2356 def test_decode_color(self): |
|
2a29bcff60a7
tests of image decoding
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parents:
18
diff
changeset
|
2357 imagej = UploadInstance(_REMOTE, 'ColorTestImageJ.dcm')['ID'] |
|
2a29bcff60a7
tests of image decoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
18
diff
changeset
|
2358 color = UploadInstance(_REMOTE, 'ColorTestMalaterre.dcm')['ID'] |
|
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Sebastien Jodogne <s.jodogne@gmail.com>
parents:
18
diff
changeset
|
2359 |
|
2a29bcff60a7
tests of image decoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
18
diff
changeset
|
2360 for i in [ imagej, color ]: |
|
2a29bcff60a7
tests of image decoding
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parents:
18
diff
changeset
|
2361 for j in [ 'image-uint8', 'image-uint16', 'image-int16' ]: |
|
2a29bcff60a7
tests of image decoding
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parents:
18
diff
changeset
|
2362 self.assertRaises(Exception, lambda: DoGet(_REMOTE, '/instances/%s/%s' % (i, j))) |
|
2a29bcff60a7
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Sebastien Jodogne <s.jodogne@gmail.com>
parents:
18
diff
changeset
|
2363 |
|
2a29bcff60a7
tests of image decoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
18
diff
changeset
|
2364 self.assertEqual('c14c687f7a1ea9fe022479fc87c67274', ComputeMD5(DoGet(_REMOTE, '/instances/%s/preview' % imagej))) |
|
2a29bcff60a7
tests of image decoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
18
diff
changeset
|
2365 self.assertEqual('a87d122918a56f803bcfe9d2586b9125', ComputeMD5(DoGet(_REMOTE, '/instances/%s/preview' % color))) |
|
2a29bcff60a7
tests of image decoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
18
diff
changeset
|
2366 |
|
2a29bcff60a7
tests of image decoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
18
diff
changeset
|
2367 self.assertEqual('30cc46bfa7aba77a40e4178f6184c25a', ComputeMD5(DoGet(_REMOTE, '/instances/%s/matlab' % imagej))) |
|
2a29bcff60a7
tests of image decoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
18
diff
changeset
|
2368 self.assertEqual('ff195005cef06b59666fd220a9b4cd9a', ComputeMD5(DoGet(_REMOTE, '/instances/%s/matlab' % color))) |
|
2a29bcff60a7
tests of image decoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
18
diff
changeset
|
2369 |
|
2a29bcff60a7
tests of image decoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
18
diff
changeset
|
2370 |
|
2a29bcff60a7
tests of image decoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
18
diff
changeset
|
2371 def test_decode_rf(self): |
|
2a29bcff60a7
tests of image decoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
18
diff
changeset
|
2372 rf = UploadInstance(_REMOTE, 'KarstenHilbertRF.dcm')['ID'] |
|
2a29bcff60a7
tests of image decoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
18
diff
changeset
|
2373 truth = Image.open(GetDatabasePath('Formats/KarstenHilbertRF.png')) |
|
2a29bcff60a7
tests of image decoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
18
diff
changeset
|
2374 |
|
2a29bcff60a7
tests of image decoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
18
diff
changeset
|
2375 self.AssertSameImages(truth.getdata(), '/instances/%s/image-uint8' % rf) |
|
2a29bcff60a7
tests of image decoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
18
diff
changeset
|
2376 self.AssertSameImages(truth.getdata(), '/instances/%s/image-uint16' % rf) |
|
2a29bcff60a7
tests of image decoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
18
diff
changeset
|
2377 self.AssertSameImages(truth.getdata(), '/instances/%s/image-int16' % rf) |
|
2a29bcff60a7
tests of image decoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
18
diff
changeset
|
2378 self.AssertSameImages(truth.getdata(), '/instances/%s/preview' % rf) |
|
2a29bcff60a7
tests of image decoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
18
diff
changeset
|
2379 |
|
2a29bcff60a7
tests of image decoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
18
diff
changeset
|
2380 self.assertEqual('42254d70efd2f4a1b8f3455909689f0e', ComputeMD5(DoGet(_REMOTE, '/instances/%s/matlab' % rf))) |
|
2a29bcff60a7
tests of image decoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
18
diff
changeset
|
2381 |
|
2a29bcff60a7
tests of image decoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
18
diff
changeset
|
2382 |
|
2a29bcff60a7
tests of image decoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
18
diff
changeset
|
2383 def test_decode_multiframe(self): |
|
2a29bcff60a7
tests of image decoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
18
diff
changeset
|
2384 mf = UploadInstance(_REMOTE, 'Multiframe.dcm')['ID'] |
|
2a29bcff60a7
tests of image decoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
18
diff
changeset
|
2385 |
|
2a29bcff60a7
tests of image decoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
18
diff
changeset
|
2386 # Test the first frame |
|
2a29bcff60a7
tests of image decoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
18
diff
changeset
|
2387 truth = Image.open(GetDatabasePath('Formats/Multiframe0.png')) |
|
2a29bcff60a7
tests of image decoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
18
diff
changeset
|
2388 self.AssertSameImages(truth.getdata(), '/instances/%s/image-uint8' % mf) |
|
2a29bcff60a7
tests of image decoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
18
diff
changeset
|
2389 self.AssertSameImages(truth.getdata(), '/instances/%s/image-uint16' % mf) |
|
2a29bcff60a7
tests of image decoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
18
diff
changeset
|
2390 self.AssertSameImages(truth.getdata(), '/instances/%s/image-int16' % mf) |
|
2a29bcff60a7
tests of image decoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
18
diff
changeset
|
2391 self.AssertSameImages(truth.getdata(), '/instances/%s/preview' % mf) |
|
2a29bcff60a7
tests of image decoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
18
diff
changeset
|
2392 self.assertEqual('9812b99d93bbcd4e7684ded089b5dfb3', ComputeMD5(DoGet(_REMOTE, '/instances/%s/matlab' % mf))) |
|
2a29bcff60a7
tests of image decoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
18
diff
changeset
|
2393 |
|
2a29bcff60a7
tests of image decoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
18
diff
changeset
|
2394 self.AssertSameImages(truth.getdata(), '/instances/%s/frames/0/image-uint16' % mf) |
|
2a29bcff60a7
tests of image decoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
18
diff
changeset
|
2395 |
|
2a29bcff60a7
tests of image decoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
18
diff
changeset
|
2396 # Test the last frame |
|
2a29bcff60a7
tests of image decoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
18
diff
changeset
|
2397 truth = Image.open(GetDatabasePath('Formats/Multiframe75.png')) |
|
2a29bcff60a7
tests of image decoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
18
diff
changeset
|
2398 self.AssertSameImages(truth.getdata(), '/instances/%s/frames/75/image-uint16' % mf) |
|
2a29bcff60a7
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Sebastien Jodogne <s.jodogne@gmail.com>
parents:
18
diff
changeset
|
2399 |
|
2a29bcff60a7
tests of image decoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
18
diff
changeset
|
2400 |
|
2a29bcff60a7
tests of image decoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
18
diff
changeset
|
2401 def test_decode_signed(self): |
|
2a29bcff60a7
tests of image decoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
18
diff
changeset
|
2402 signed = UploadInstance(_REMOTE, 'SignedCT.dcm')['ID'] |
|
2a29bcff60a7
tests of image decoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
18
diff
changeset
|
2403 minValue = -2000 |
|
2a29bcff60a7
tests of image decoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
18
diff
changeset
|
2404 maxValue = 4042 |
|
2a29bcff60a7
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Sebastien Jodogne <s.jodogne@gmail.com>
parents:
18
diff
changeset
|
2405 |
|
2a29bcff60a7
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Sebastien Jodogne <s.jodogne@gmail.com>
parents:
18
diff
changeset
|
2406 truth = Image.open(GetDatabasePath('Formats/SignedCT.png')) |
|
2a29bcff60a7
tests of image decoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
18
diff
changeset
|
2407 self.AssertSameImages(truth.getdata(), '/instances/%s/image-int16' % signed) |
|
2a29bcff60a7
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Sebastien Jodogne <s.jodogne@gmail.com>
parents:
18
diff
changeset
|
2408 |
|
2a29bcff60a7
tests of image decoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
18
diff
changeset
|
2409 truth2 = map(lambda x: 0 if x >= 32768 else x, truth.getdata()) |
|
2a29bcff60a7
tests of image decoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
18
diff
changeset
|
2410 self.AssertSameImages(truth2, '/instances/%s/image-uint16' % signed) |
|
2a29bcff60a7
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Sebastien Jodogne <s.jodogne@gmail.com>
parents:
18
diff
changeset
|
2411 |
|
2a29bcff60a7
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Sebastien Jodogne <s.jodogne@gmail.com>
parents:
18
diff
changeset
|
2412 truth3 = map(lambda x: 255 if x >= 256 else x, truth2) |
|
2a29bcff60a7
tests of image decoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
18
diff
changeset
|
2413 self.AssertSameImages(truth3, '/instances/%s/image-uint8' % signed) |
|
2a29bcff60a7
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Sebastien Jodogne <s.jodogne@gmail.com>
parents:
18
diff
changeset
|
2414 |
|
2a29bcff60a7
tests of image decoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
18
diff
changeset
|
2415 tmp = map(lambda x: x - 65536 if x >= 32768 else x, truth.getdata()) |
|
2a29bcff60a7
tests of image decoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
18
diff
changeset
|
2416 tmp = map(lambda x: (255.0 * (x - minValue)) / (maxValue - minValue), tmp) |
|
2a29bcff60a7
tests of image decoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
18
diff
changeset
|
2417 self.AssertSameImages(tmp, '/instances/%s/preview' % signed) |
|
2a29bcff60a7
tests of image decoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
18
diff
changeset
|
2418 |
|
2a29bcff60a7
tests of image decoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
18
diff
changeset
|
2419 self.assertEqual('b57e6c872a3da50877c7da689b03a444', ComputeMD5(DoGet(_REMOTE, '/instances/%s/matlab' % signed))) |
| 22 | 2420 |
| 2421 | |
|
46
85b2e36ed392
explicit GoogleCode source
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
45
diff
changeset
|
2422 def test_googlecode_issue_32(self): |
|
92
dbcbffb889da
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Sebastien Jodogne <s.jodogne@gmail.com>
parents:
89
diff
changeset
|
2423 self.assertRaises(Exception, lambda: DoPut(_REMOTE, '/tools/default-encoding', 'nope')) |
|
dbcbffb889da
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Sebastien Jodogne <s.jodogne@gmail.com>
parents:
89
diff
changeset
|
2424 self.assertEqual('Windows1251', DoPut(_REMOTE, '/tools/default-encoding', 'Windows1251')) |
|
dbcbffb889da
test_findscu_encoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
89
diff
changeset
|
2425 self.assertEqual('Windows1251', DoGet(_REMOTE, '/tools/default-encoding')) |
|
dbcbffb889da
test_findscu_encoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
89
diff
changeset
|
2426 |
| 22 | 2427 f = UploadInstance(_REMOTE, 'Issue32.dcm')['ID'] |
| 2428 tags = DoGet(_REMOTE, '/instances/%s/tags?simplify' % f) | |
| 2429 self.assertEqual(u'Рентгенография', tags['SeriesDescription']) | |
| 2430 self.assertEqual(u'Таз', tags['BodyPartExamined']) | |
| 2431 self.assertEqual(u'Прямая', tags['ViewPosition']) | |
| 2432 | |
|
92
dbcbffb889da
test_findscu_encoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
89
diff
changeset
|
2433 # Replay the same test using Latin1 as default encoding: This must fail |
|
dbcbffb889da
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Sebastien Jodogne <s.jodogne@gmail.com>
parents:
89
diff
changeset
|
2434 self.assertEqual('Latin1', DoPut(_REMOTE, '/tools/default-encoding', 'Latin1')) |
|
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Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
changeset
|
2435 |
|
dbcbffb889da
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Sebastien Jodogne <s.jodogne@gmail.com>
parents:
89
diff
changeset
|
2436 DoDelete(_REMOTE, '/instances/%s' % f) |
|
dbcbffb889da
test_findscu_encoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
89
diff
changeset
|
2437 f = UploadInstance(_REMOTE, 'Issue32.dcm')['ID'] |
|
dbcbffb889da
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Sebastien Jodogne <s.jodogne@gmail.com>
parents:
89
diff
changeset
|
2438 tags = DoGet(_REMOTE, '/instances/%s/tags?simplify' % f) |
|
dbcbffb889da
test_findscu_encoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
89
diff
changeset
|
2439 self.assertNotEqual(u'Рентгенография', tags['SeriesDescription']) |
|
dbcbffb889da
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Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
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|
2440 |
| 314 | 2441 # Back to UTF-8 |
| 2442 self.assertEqual('Utf8', DoPut(_REMOTE, '/tools/default-encoding', 'Utf8')) | |
| 2443 | |
|
92
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diff
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|
2444 |
| 22 | 2445 def test_encodings(self): |
| 23 | 2446 # Latin-1 (ISO_IR 100) |
| 22 | 2447 brainix = UploadInstance(_REMOTE, 'Brainix/Epi/IM-0001-0001.dcm')['ID'] |
| 2448 tags = DoGet(_REMOTE, '/instances/%s/tags?simplify' % brainix) | |
| 2449 self.assertEqual(u'IRM cérébrale, neuro-crâne', tags['StudyDescription']) | |
| 23 | 2450 |
| 2451 # Latin-2 (ISO_IR 101) | |
| 2452 a = UploadInstance(_REMOTE, 'MarekLatin2.dcm')['ID'] | |
| 2453 i = DoGet(_REMOTE, '/instances/%s/simplified-tags' % a) | |
| 2454 # dcm2xml MarekLatin2.dcm | iconv -f latin2 -t utf-8 | xmllint --format - | |
| 2455 self.assertEqual('Imię i Nazwisko osoby opisującej', | |
| 2456 i['ContentSequence'][4]['ConceptNameCodeSequence'][0]['CodeMeaning'].encode('utf-8')) | |
| 2457 | |
|
26
040f6ef1394a
test_storescu_custom_aet
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
23
diff
changeset
|
2458 |
|
040f6ef1394a
test_storescu_custom_aet
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
23
diff
changeset
|
2459 def test_storescu_custom_aet(self): |
|
040f6ef1394a
test_storescu_custom_aet
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
23
diff
changeset
|
2460 # This tests a feature introduced in Orthanc 0.9.1: "Custom |
|
040f6ef1394a
test_storescu_custom_aet
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
23
diff
changeset
|
2461 # setting of the local AET during C-Store SCU (both in Lua and |
|
040f6ef1394a
test_storescu_custom_aet
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
23
diff
changeset
|
2462 # in the REST API)." |
|
040f6ef1394a
test_storescu_custom_aet
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
23
diff
changeset
|
2463 # https://groups.google.com/forum/#!msg/orthanc-users/o5qMULformU/wZjW2iSaMcAJ |
|
040f6ef1394a
test_storescu_custom_aet
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
23
diff
changeset
|
2464 |
|
040f6ef1394a
test_storescu_custom_aet
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
23
diff
changeset
|
2465 self.assertEqual(0, len(DoGet(_LOCAL, '/patients'))) |
|
040f6ef1394a
test_storescu_custom_aet
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
23
diff
changeset
|
2466 |
|
040f6ef1394a
test_storescu_custom_aet
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
23
diff
changeset
|
2467 a = UploadInstance(_REMOTE, 'Knee/T1/IM-0001-0001.dcm') |
|
040f6ef1394a
test_storescu_custom_aet
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
23
diff
changeset
|
2468 b = UploadInstance(_REMOTE, 'Knee/T1/IM-0001-0002.dcm') |
|
040f6ef1394a
test_storescu_custom_aet
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
23
diff
changeset
|
2469 c = UploadInstance(_REMOTE, 'Knee/T1/IM-0001-0003.dcm') |
|
040f6ef1394a
test_storescu_custom_aet
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
23
diff
changeset
|
2470 |
|
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diff
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|
2471 j = DoPost(_REMOTE, '/modalities/orthanctest/store', { |
|
040f6ef1394a
test_storescu_custom_aet
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diff
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|
2472 'LocalAet' : 'YOP', |
|
040f6ef1394a
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diff
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|
2473 'Resources' : [ a['ID'], b['ID'] ] |
|
040f6ef1394a
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diff
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|
2474 }) |
|
040f6ef1394a
test_storescu_custom_aet
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diff
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|
2475 |
|
040f6ef1394a
test_storescu_custom_aet
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diff
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|
2476 self.assertEqual(2, len(DoGet(_LOCAL, '/instances'))) |
|
040f6ef1394a
test_storescu_custom_aet
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diff
changeset
|
2477 self.assertEqual('YOP', DoGet(_LOCAL, '/instances/%s/metadata/RemoteAET' % a['ID'])) |
|
040f6ef1394a
test_storescu_custom_aet
Sebastien Jodogne <s.jodogne@gmail.com>
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23
diff
changeset
|
2478 |
|
040f6ef1394a
test_storescu_custom_aet
Sebastien Jodogne <s.jodogne@gmail.com>
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diff
changeset
|
2479 DropOrthanc(_LOCAL) |
|
040f6ef1394a
test_storescu_custom_aet
Sebastien Jodogne <s.jodogne@gmail.com>
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23
diff
changeset
|
2480 self.assertEqual(0, len(DoGet(_LOCAL, '/instances'))) |
|
040f6ef1394a
test_storescu_custom_aet
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diff
changeset
|
2481 |
|
040f6ef1394a
test_storescu_custom_aet
Sebastien Jodogne <s.jodogne@gmail.com>
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diff
changeset
|
2482 j = DoPost(_REMOTE, '/modalities/orthanctest/store', { |
|
040f6ef1394a
test_storescu_custom_aet
Sebastien Jodogne <s.jodogne@gmail.com>
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23
diff
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|
2483 'Resources' : [ c['ID'] ] |
|
040f6ef1394a
test_storescu_custom_aet
Sebastien Jodogne <s.jodogne@gmail.com>
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23
diff
changeset
|
2484 }) |
|
040f6ef1394a
test_storescu_custom_aet
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diff
changeset
|
2485 |
|
040f6ef1394a
test_storescu_custom_aet
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diff
changeset
|
2486 self.assertEqual(1, len(DoGet(_LOCAL, '/instances'))) |
|
040f6ef1394a
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diff
changeset
|
2487 self.assertEqual('ORTHANC', DoGet(_LOCAL, '/instances/%s/metadata/RemoteAET' % c['ID'])) |
|
040f6ef1394a
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diff
changeset
|
2488 |
|
040f6ef1394a
test_storescu_custom_aet
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diff
changeset
|
2489 DropOrthanc(_REMOTE) |
|
040f6ef1394a
test_storescu_custom_aet
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diff
changeset
|
2490 DropOrthanc(_LOCAL) |
|
040f6ef1394a
test_storescu_custom_aet
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diff
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|
2491 |
| 174 | 2492 InstallLuaScriptFromPath(_REMOTE, 'Lua/AutoroutingChangeAet.lua') |
|
26
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diff
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|
2493 DoPost(_REMOTE, '/tools/execute-script', 'aet = "HELLO"', 'application/lua') |
|
040f6ef1394a
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diff
changeset
|
2494 |
|
040f6ef1394a
test_storescu_custom_aet
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diff
changeset
|
2495 self.assertEqual(0, len(DoGet(_LOCAL, '/instances'))) |
|
040f6ef1394a
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diff
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|
2496 UploadInstance(_REMOTE, 'Knee/T1/IM-0001-0001.dcm') |
|
040f6ef1394a
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diff
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|
2497 WaitEmpty(_REMOTE) |
|
040f6ef1394a
test_storescu_custom_aet
Sebastien Jodogne <s.jodogne@gmail.com>
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diff
changeset
|
2498 self.assertEqual(1, len(DoGet(_LOCAL, '/instances'))) |
|
040f6ef1394a
test_storescu_custom_aet
Sebastien Jodogne <s.jodogne@gmail.com>
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diff
changeset
|
2499 self.assertEqual('HELLO', DoGet(_LOCAL, '/instances/%s/metadata/RemoteAET' % a['ID'])) |
|
040f6ef1394a
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diff
changeset
|
2500 |
|
040f6ef1394a
test_storescu_custom_aet
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diff
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|
2501 DoPost(_REMOTE, '/tools/execute-script', 'aet = nill', 'application/lua') |
|
040f6ef1394a
test_storescu_custom_aet
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|
2502 UploadInstance(_REMOTE, 'Knee/T1/IM-0001-0002.dcm') |
|
040f6ef1394a
test_storescu_custom_aet
Sebastien Jodogne <s.jodogne@gmail.com>
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diff
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|
2503 WaitEmpty(_REMOTE) |
|
040f6ef1394a
test_storescu_custom_aet
Sebastien Jodogne <s.jodogne@gmail.com>
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diff
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|
2504 self.assertEqual(2, len(DoGet(_LOCAL, '/instances'))) |
|
040f6ef1394a
test_storescu_custom_aet
Sebastien Jodogne <s.jodogne@gmail.com>
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diff
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|
2505 self.assertEqual('ORTHANC', DoGet(_LOCAL, '/instances/%s/metadata/RemoteAET' % b['ID'])) |
|
34
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|
2506 |
|
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|
2507 def test_resources_since_limit(self): |
|
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test limit and since arguments while retrieving DICOM resources in the REST API
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|
2508 # Upload 16 instances |
|
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|
2509 for i in range(4): |
|
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|
2510 UploadInstance(_REMOTE, 'Brainix/Flair/IM-0001-000%d.dcm' % (i + 1)) |
|
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test limit and since arguments while retrieving DICOM resources in the REST API
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|
2511 UploadInstance(_REMOTE, 'Brainix/Epi/IM-0001-000%d.dcm' % (i + 1)) |
|
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diff
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|
2512 UploadInstance(_REMOTE, 'Knee/T1/IM-0001-000%d.dcm' % (i + 1)) |
|
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test limit and since arguments while retrieving DICOM resources in the REST API
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diff
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|
2513 UploadInstance(_REMOTE, 'Knee/T2/IM-0001-000%d.dcm' % (i + 1)) |
|
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|
2514 |
|
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|
2515 self.assertEqual(2, len(DoGet(_REMOTE, '/patients'))) |
|
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|
2516 self.assertEqual(2, len(DoGet(_REMOTE, '/studies'))) |
|
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|
2517 self.assertEqual(4, len(DoGet(_REMOTE, '/series'))) |
|
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|
2518 self.assertEqual(16, len(DoGet(_REMOTE, '/instances'))) |
|
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|
2519 |
|
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|
2520 self.assertRaises(Exception, lambda: DoGet(_REMOTE, '/patients&since=10' % i)) |
|
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|
2521 self.assertRaises(Exception, lambda: DoGet(_REMOTE, '/patients&limit=10' % i)) |
|
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|
2522 |
|
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|
2523 self.assertEqual(0, len(DoGet(_REMOTE, '/patients?since=0&limit=0'))) |
|
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|
2524 self.assertEqual(2, len(DoGet(_REMOTE, '/patients?since=0&limit=100'))) |
|
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|
2525 self.assertEqual(2, len(DoGet(_REMOTE, '/studies?since=0&limit=100'))) |
|
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diff
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|
2526 self.assertEqual(4, len(DoGet(_REMOTE, '/series?since=0&limit=100'))) |
|
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diff
changeset
|
2527 self.assertEqual(16, len(DoGet(_REMOTE, '/instances?since=0&limit=100'))) |
|
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diff
changeset
|
2528 self.assertEqual(1, len(DoGet(_REMOTE, '/patients?since=1&limit=100'))) |
|
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diff
changeset
|
2529 self.assertEqual(0, len(DoGet(_REMOTE, '/patients?since=2&limit=100'))) |
|
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diff
changeset
|
2530 self.assertEqual(0, len(DoGet(_REMOTE, '/patients?since=3&limit=100'))) |
|
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diff
changeset
|
2531 self.assertEqual(1, len(DoGet(_REMOTE, '/studies?since=1&limit=100'))) |
|
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diff
changeset
|
2532 self.assertEqual(3, len(DoGet(_REMOTE, '/series?since=1&limit=100'))) |
|
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diff
changeset
|
2533 self.assertEqual(2, len(DoGet(_REMOTE, '/series?since=2&limit=100'))) |
|
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diff
changeset
|
2534 self.assertEqual(1, len(DoGet(_REMOTE, '/series?since=3&limit=100'))) |
|
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diff
changeset
|
2535 self.assertEqual(0, len(DoGet(_REMOTE, '/series?since=4&limit=100'))) |
|
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diff
changeset
|
2536 self.assertEqual(0, len(DoGet(_REMOTE, '/series?since=100&limit=100'))) |
|
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|
2537 self.assertEqual(15, len(DoGet(_REMOTE, '/instances?since=1&limit=100'))) |
|
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|
2538 |
|
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changeset
|
2539 for limit in [ 1, 2, 3, 7, 16, 17 ]: |
|
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|
2540 s = {} |
|
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|
2541 since = 0 |
|
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diff
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|
2542 while True: |
|
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diff
changeset
|
2543 t = DoGet(_REMOTE, '/instances?since=%d&limit=%d' % (since, limit)) |
|
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|
2544 if len(t) == 0: |
|
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diff
changeset
|
2545 break |
|
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diff
changeset
|
2546 |
|
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changeset
|
2547 since += len(t) |
|
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|
2548 for i in t: |
|
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diff
changeset
|
2549 s[i] = None |
|
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|
2550 |
|
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diff
changeset
|
2551 self.assertEqual(16, len(s)) |
|
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|
2552 for instance in DoGet(_REMOTE, '/instances'): |
|
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|
2553 self.assertTrue(instance in s) |
| 36 | 2554 |
| 2555 | |
| 2556 def test_create_pdf(self): | |
| 2557 # Upload 4 instances | |
| 2558 brainixInstance = UploadInstance(_REMOTE, 'Brainix/Flair/IM-0001-0001.dcm')['ID'] | |
| 2559 UploadInstance(_REMOTE, 'Brainix/Epi/IM-0001-0001.dcm') | |
| 2560 UploadInstance(_REMOTE, 'Knee/T1/IM-0001-0001.dcm') | |
| 2561 UploadInstance(_REMOTE, 'Knee/T2/IM-0001-0001.dcm') | |
| 2562 | |
| 2563 brainixPatient = '16738bc3-e47ed42a-43ce044c-a3414a45-cb069bd0' | |
| 2564 brainixStudy = '27f7126f-4f66fb14-03f4081b-f9341db2-53925988' | |
| 2565 brainixEpi = '2ac1316d-3e432022-62eabff2-c59f5475-9b1ac3f8' | |
| 2566 | |
| 2567 with open(GetDatabasePath('HelloWorld.pdf'), 'rb') as f: | |
| 2568 pdf = f.read() | |
| 2569 | |
| 2570 i = DoPost(_REMOTE, '/tools/create-dicom', | |
| 2571 json.dumps({ | |
| 2572 'Tags' : { | |
| 2573 'PatientName' : 'Jodogne', | |
| 2574 'Modality' : 'CT', | |
| 2575 }, | |
| 2576 'Content' : 'data:application/pdf;base64,' + base64.b64encode(pdf) | |
| 2577 })) | |
| 2578 | |
| 2579 self.assertEqual('Jodogne', DoGet(_REMOTE, '/instances/%s/content/PatientName' % i['ID']).strip()) | |
| 2580 self.assertEqual('OT', DoGet(_REMOTE, '/instances/%s/content/Modality' % i['ID']).strip()) | |
| 2581 | |
| 2582 b = DoGet(_REMOTE, '/instances/%s/content/0042-0011' % i['ID']) | |
| 2583 self.assertEqual(len(b), len(pdf) + 1) | |
| 2584 self.assertEqual(ComputeMD5(b), ComputeMD5(pdf + '\0')) | |
| 2585 | |
| 2586 self.assertRaises(Exception, lambda: DoPost(_REMOTE, '/tools/create-dicom', | |
| 2587 json.dumps({ | |
| 2588 'Parent' : brainixPatient, | |
| 2589 'Tags' : { | |
| 2590 'PatientName' : 'Jodogne', | |
| 2591 } | |
| 2592 }))) | |
| 2593 | |
| 2594 i = DoPost(_REMOTE, '/tools/create-dicom', | |
| 2595 json.dumps({ | |
| 2596 'Parent' : brainixPatient, | |
| 2597 'Tags' : { 'StudyDescription' : 'PDF^Patient' }, | |
| 2598 'Content' : 'data:application/pdf;base64,' + base64.b64encode(pdf) | |
| 2599 })) | |
| 2600 | |
| 2601 self.assertEqual(brainixPatient, DoGet(_REMOTE, '/instances/%s/patient' % i['ID'])['ID']) | |
| 2602 | |
| 2603 i = DoPost(_REMOTE, '/tools/create-dicom', | |
| 2604 json.dumps({ | |
| 2605 'Parent' : brainixStudy, | |
| 2606 'Tags' : { 'SeriesDescription' : 'PDF^Study' }, | |
| 2607 'Content' : 'data:application/pdf;base64,' + base64.b64encode(pdf) | |
| 2608 })) | |
| 2609 | |
| 2610 self.assertEqual(brainixStudy, DoGet(_REMOTE, '/instances/%s/study' % i['ID'])['ID']) | |
| 2611 | |
| 2612 i = DoPost(_REMOTE, '/tools/create-dicom', | |
| 2613 json.dumps({ | |
| 2614 'Parent' : brainixEpi, | |
| 37 | 2615 'Tags' : { 'SpecificCharacterSet' : 'ISO_IR 13' }, |
| 36 | 2616 'Content' : 'data:application/pdf;base64,' + base64.b64encode(pdf) |
| 2617 })) | |
| 2618 | |
| 2619 self.assertEqual(brainixEpi, DoGet(_REMOTE, '/instances/%s/series' % i['ID'])['ID']) | |
| 2620 | |
| 2621 b = DoGet(_REMOTE, '/instances/%s/pdf' % i['ID']) | |
| 2622 self.assertEqual(len(b), len(pdf)) | |
| 2623 self.assertEqual(ComputeMD5(b), ComputeMD5(pdf)) | |
| 2624 | |
| 2625 self.assertRaises(Exception, lambda: DoGet(_REMOTE, '/instances/%s/pdf' % brainixInstance)) | |
| 38 | 2626 |
| 2627 | |
| 2628 def test_create_series(self): | |
| 2629 i = DoPost(_REMOTE, '/tools/create-dicom', | |
| 2630 json.dumps({ | |
| 2631 'Tags' : { | |
| 40 | 2632 'SpecificCharacterSet' : 'ISO_IR 100', |
| 2633 'PatientName' : 'Sébastien Jodogne', | |
| 38 | 2634 'Modality' : 'CT', |
| 2635 }, | |
| 2636 'Content' : [ | |
| 40 | 2637 { |
| 2638 'Content': 'data:image/png;base64,iVBORw0KGgoAAAANSUhEUgAAAAUAAAAFCAYAAACNbyblAAAAHElEQVQI12P4//8/w38GIAXDIBKE0DHxgljNBAAO9TXL0Y4OHwAAAABJRU5ErkJggg==', # red dot in RGBA | |
| 2639 'Tags' : { 'ImageComments' : 'Tutu' } | |
| 2640 }, | |
| 38 | 2641 'data:image/png;base64,iVBORw0KGgoAAAANSUhEUgAAABAAAAAQCAYAAAAf8/9hAAAAoUlEQVQ4jZ2SWw3EIBREjwUsYAELa2EtoAULFUCyXAtroRZqoRbox254BdLC/DZnZjoXWJFgCDg8egW2CBEhEnDzyRk+Ecxz2KP/0AL8S99T+jQccAVs22qKwAuPuq0uyNg9cPLh3am+pe/dkHLZtqJHj6vXJrZ7nvzvxxgemXgUwnGfXqpee09mUwp8m022OYP6bLF7mVuVe0y/umxinsAXRd9z0k1ubWsAAAAASUVORK5CYII=', |
| 2642 ] | |
| 2643 })) | |
| 2644 | |
| 2645 s = DoGet(_REMOTE, i['Path']) | |
| 2646 self.assertEqual('Series', s['Type']) | |
| 2647 self.assertEqual(s['ID'], i['ID']) | |
| 2648 self.assertEqual(2, len(s['Instances'])) | |
| 39 | 2649 self.assertEqual(2, s['ExpectedNumberOfInstances']) |
| 2650 self.assertEqual('Complete', s['Status']) | |
| 40 | 2651 |
| 2652 a = DoGet(_REMOTE, '/instances/%s/tags?simplify' % s['Instances'][0]) | |
| 2653 b = DoGet(_REMOTE, '/instances/%s/tags?simplify' % s['Instances'][1]) | |
| 2654 self.assertTrue('ImageComments' in a or 'ImageComments' in b) | |
| 2655 if 'ImageComments' in a: | |
| 2656 self.assertEqual('Tutu', a['ImageComments']) | |
| 2657 else: | |
| 2658 self.assertEqual('Tutu', b['ImageComments']) | |
| 2659 | |
| 2660 patient = DoGet(_REMOTE, '/instances/%s/patient' % s['Instances'][0]) | |
| 2661 self.assertEqual(patient['MainDicomTags']['PatientName'].encode('utf-8'), | |
| 2662 'Sébastien Jodogne') | |
| 47 | 2663 |
| 2664 | |
| 2665 def test_create_binary(self): | |
| 2666 binary = ''.join(map(chr, range(256))) | |
| 2667 encoded = 'data:application/octet-stream;base64,' + base64.b64encode(binary) | |
| 2668 tags = { | |
| 2669 'PatientName' : 'Jodogne', | |
| 2670 '8899-8899' : encoded | |
| 2671 } | |
| 2672 | |
| 2673 i = DoPost(_REMOTE, '/tools/create-dicom', | |
| 2674 json.dumps({ | |
| 266 | 2675 'Tags' : tags, |
| 2676 'PrivateCreator' : 'TestBinary', | |
| 47 | 2677 })) |
| 2678 | |
| 2679 self.assertEqual('Jodogne', DoGet(_REMOTE, '/instances/%s/content/PatientName' % i['ID']).strip()) | |
| 2680 self.assertEqual(binary, DoGet(_REMOTE, '/instances/%s/content/8899-8899' % i['ID']).strip()) | |
| 2681 | |
| 2682 i = DoPost(_REMOTE, '/tools/create-dicom', | |
| 2683 json.dumps({ | |
| 2684 'InterpretBinaryTags' : False, | |
| 266 | 2685 'Tags' : tags, |
| 2686 'PrivateCreator' : 'TestBinary', | |
| 47 | 2687 })) |
| 2688 | |
| 2689 self.assertEqual('Jodogne', DoGet(_REMOTE, '/instances/%s/content/PatientName' % i['ID']).strip()) | |
| 2690 self.assertEqual(encoded, DoGet(_REMOTE, '/instances/%s/content/8899-8899' % i['ID'])[0:-1]) | |
|
48
e4352463ff74
test_patient_ids_collision
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
47
diff
changeset
|
2691 |
|
e4352463ff74
test_patient_ids_collision
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
47
diff
changeset
|
2692 |
|
e4352463ff74
test_patient_ids_collision
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
47
diff
changeset
|
2693 def test_patient_ids_collision(self): |
|
e4352463ff74
test_patient_ids_collision
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
47
diff
changeset
|
2694 # Upload 3 instances from 3 different studies, but with the |
|
e4352463ff74
test_patient_ids_collision
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
47
diff
changeset
|
2695 # same PatientID |
|
e4352463ff74
test_patient_ids_collision
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
47
diff
changeset
|
2696 for i in range(3): |
|
e4352463ff74
test_patient_ids_collision
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
47
diff
changeset
|
2697 UploadInstance(_REMOTE, 'PatientIdsCollision/Image%d.dcm' % (i + 1)) |
|
e4352463ff74
test_patient_ids_collision
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
47
diff
changeset
|
2698 |
|
e4352463ff74
test_patient_ids_collision
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
47
diff
changeset
|
2699 a = DoPost(_REMOTE, '/tools/find', { 'Level' : 'Patient', |
|
e4352463ff74
test_patient_ids_collision
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
47
diff
changeset
|
2700 'Query' : { 'PatientName' : '*' }}) |
|
e4352463ff74
test_patient_ids_collision
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
47
diff
changeset
|
2701 self.assertEqual(1, len(a)) |
|
e4352463ff74
test_patient_ids_collision
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
47
diff
changeset
|
2702 self.assertEqual('COMMON', DoGet(_REMOTE, '/patients/%s' % a[0]) ['MainDicomTags']['PatientID']) |
|
e4352463ff74
test_patient_ids_collision
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
47
diff
changeset
|
2703 |
|
e4352463ff74
test_patient_ids_collision
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
47
diff
changeset
|
2704 a = DoPost(_REMOTE, '/tools/find', { 'Level' : 'Study', |
|
e4352463ff74
test_patient_ids_collision
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
47
diff
changeset
|
2705 'CaseSensitive' : True, |
|
e4352463ff74
test_patient_ids_collision
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
47
diff
changeset
|
2706 'Query' : { 'PatientName' : 'FOO\\HELLO' }}) |
|
e4352463ff74
test_patient_ids_collision
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
47
diff
changeset
|
2707 self.assertEqual(2, len(a)) |
|
e4352463ff74
test_patient_ids_collision
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
47
diff
changeset
|
2708 |
|
e4352463ff74
test_patient_ids_collision
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
47
diff
changeset
|
2709 a = DoPost(_REMOTE, '/tools/find', { 'Level' : 'Series', |
|
e4352463ff74
test_patient_ids_collision
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
47
diff
changeset
|
2710 'CaseSensitive' : False, |
|
e4352463ff74
test_patient_ids_collision
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
47
diff
changeset
|
2711 'Query' : { 'PatientName' : 'Foo' }}) |
|
e4352463ff74
test_patient_ids_collision
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
47
diff
changeset
|
2712 self.assertEqual(1, len(a)) |
|
e4352463ff74
test_patient_ids_collision
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
47
diff
changeset
|
2713 self.assertEqual('FOO^SERIES', DoGet(_REMOTE, '/series/%s/study' % a[0]) ['MainDicomTags']['StudyDescription']) |
|
e4352463ff74
test_patient_ids_collision
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
47
diff
changeset
|
2714 self.assertEqual('FOO', DoGet(_REMOTE, '/series/%s/study' % a[0]) ['PatientMainDicomTags']['PatientName']) |
|
e4352463ff74
test_patient_ids_collision
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
47
diff
changeset
|
2715 self.assertEqual('COMMON', DoGet(_REMOTE, '/series/%s/study' % a[0]) ['PatientMainDicomTags']['PatientID']) |
|
e4352463ff74
test_patient_ids_collision
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
47
diff
changeset
|
2716 |
|
e4352463ff74
test_patient_ids_collision
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
47
diff
changeset
|
2717 a = DoPost(_REMOTE, '/tools/find', { 'Level' : 'Study', |
|
e4352463ff74
test_patient_ids_collision
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
47
diff
changeset
|
2718 'Query' : { 'PatientName' : '*' }}) |
|
e4352463ff74
test_patient_ids_collision
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
47
diff
changeset
|
2719 self.assertEqual(3, len(a)) |
|
e4352463ff74
test_patient_ids_collision
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
47
diff
changeset
|
2720 d = map(lambda x: DoGet(_REMOTE, '/studies/%s' % x) ['MainDicomTags']['StudyDescription'], a) |
|
e4352463ff74
test_patient_ids_collision
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
47
diff
changeset
|
2721 self.assertTrue('FOO^SERIES' in d) |
|
e4352463ff74
test_patient_ids_collision
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
47
diff
changeset
|
2722 self.assertTrue('HELLO^SERIES' in d) |
|
e4352463ff74
test_patient_ids_collision
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
47
diff
changeset
|
2723 self.assertTrue('WORLD^SERIES' in d) |
|
e4352463ff74
test_patient_ids_collision
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
47
diff
changeset
|
2724 |
|
e4352463ff74
test_patient_ids_collision
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
47
diff
changeset
|
2725 d = map(lambda x: DoGet(_REMOTE, '/studies/%s' % x) ['PatientMainDicomTags']['PatientID'], a) |
|
e4352463ff74
test_patient_ids_collision
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
47
diff
changeset
|
2726 self.assertEqual(1, len(set(d))) |
|
e4352463ff74
test_patient_ids_collision
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
47
diff
changeset
|
2727 self.assertEqual('COMMON', d[0]) |
|
e4352463ff74
test_patient_ids_collision
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
47
diff
changeset
|
2728 |
|
e4352463ff74
test_patient_ids_collision
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
47
diff
changeset
|
2729 for i in a: |
|
e4352463ff74
test_patient_ids_collision
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
47
diff
changeset
|
2730 d = DoGet(_REMOTE, '/studies/%s' % i) ['MainDicomTags']['StudyDescription'] |
|
e4352463ff74
test_patient_ids_collision
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
47
diff
changeset
|
2731 p = DoGet(_REMOTE, '/studies/%s' % i) ['PatientMainDicomTags']['PatientName'] |
|
e4352463ff74
test_patient_ids_collision
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
47
diff
changeset
|
2732 self.assertEqual('%s^SERIES' % p, d) |
|
49
e7f9b8199545
test_bitbucket_issue_4
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
48
diff
changeset
|
2733 |
|
e7f9b8199545
test_bitbucket_issue_4
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
48
diff
changeset
|
2734 |
|
e7f9b8199545
test_bitbucket_issue_4
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
48
diff
changeset
|
2735 def test_bitbucket_issue_4(self): |
|
e7f9b8199545
test_bitbucket_issue_4
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
48
diff
changeset
|
2736 UploadInstance(_REMOTE, 'Brainix/Epi/IM-0001-0001.dcm') |
|
e7f9b8199545
test_bitbucket_issue_4
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
48
diff
changeset
|
2737 UploadInstance(_REMOTE, 'Brainix/Epi/IM-0001-0002.dcm') |
|
e7f9b8199545
test_bitbucket_issue_4
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
48
diff
changeset
|
2738 UploadInstance(_REMOTE, 'Brainix/Epi/IM-0001-0003.dcm') |
|
e7f9b8199545
test_bitbucket_issue_4
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
48
diff
changeset
|
2739 UploadInstance(_REMOTE, 'Formats/Jpeg.dcm') |
|
e7f9b8199545
test_bitbucket_issue_4
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
48
diff
changeset
|
2740 UploadInstance(_REMOTE, 'Formats/JpegLossless.dcm') |
|
e7f9b8199545
test_bitbucket_issue_4
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
48
diff
changeset
|
2741 UploadInstance(_REMOTE, 'Formats/Rle.dcm') |
|
e7f9b8199545
test_bitbucket_issue_4
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
48
diff
changeset
|
2742 |
|
e7f9b8199545
test_bitbucket_issue_4
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
48
diff
changeset
|
2743 self.assertEqual(0, len(DoGet(_LOCAL, '/instances'))) |
|
e7f9b8199545
test_bitbucket_issue_4
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
48
diff
changeset
|
2744 self.assertEqual(6, len(DoGet(_REMOTE, '/instances'))) |
|
e7f9b8199545
test_bitbucket_issue_4
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
48
diff
changeset
|
2745 |
|
e7f9b8199545
test_bitbucket_issue_4
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
48
diff
changeset
|
2746 p = DoGet(_REMOTE, '/patients') |
|
e7f9b8199545
test_bitbucket_issue_4
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
48
diff
changeset
|
2747 self.assertEqual(2, len(p)) |
|
e7f9b8199545
test_bitbucket_issue_4
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
48
diff
changeset
|
2748 i1 = map(lambda x: x['ID'], DoGet(_REMOTE, '/patients/%s/instances' % p[0])) |
|
e7f9b8199545
test_bitbucket_issue_4
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
48
diff
changeset
|
2749 i2 = map(lambda x: x['ID'], DoGet(_REMOTE, '/patients/%s/instances' % p[1])) |
|
e7f9b8199545
test_bitbucket_issue_4
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
48
diff
changeset
|
2750 self.assertEqual(3, len(i1)) |
|
e7f9b8199545
test_bitbucket_issue_4
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
48
diff
changeset
|
2751 self.assertEqual(3, len(i2)) |
|
e7f9b8199545
test_bitbucket_issue_4
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
48
diff
changeset
|
2752 |
|
e7f9b8199545
test_bitbucket_issue_4
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
48
diff
changeset
|
2753 j = DoPost(_REMOTE, '/modalities/orthanctest/store', i2[0:1] + i1 + i2[1:3]) |
|
e7f9b8199545
test_bitbucket_issue_4
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
48
diff
changeset
|
2754 |
|
e7f9b8199545
test_bitbucket_issue_4
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
48
diff
changeset
|
2755 self.assertEqual(6, len(DoGet(_LOCAL, '/instances'))) |
|
50
8de63d56cf11
test_create_sequence
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
49
diff
changeset
|
2756 |
|
8de63d56cf11
test_create_sequence
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
49
diff
changeset
|
2757 |
|
8de63d56cf11
test_create_sequence
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
49
diff
changeset
|
2758 def test_create_sequence(self): |
|
8de63d56cf11
test_create_sequence
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
49
diff
changeset
|
2759 i = DoPost(_REMOTE, '/tools/create-dicom', |
|
8de63d56cf11
test_create_sequence
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
49
diff
changeset
|
2760 json.dumps({ |
|
8de63d56cf11
test_create_sequence
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
49
diff
changeset
|
2761 'Tags' : { |
|
8de63d56cf11
test_create_sequence
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
49
diff
changeset
|
2762 'SpecificCharacterSet': 'ISO_IR 100', # Encode using Latin1 |
|
8de63d56cf11
test_create_sequence
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
49
diff
changeset
|
2763 'PatientName': 'Jodogne^', |
|
51
264a20a0276d
test_modify_sequence
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
50
diff
changeset
|
2764 'ReferencedStudySequence': GenerateTestSequence(), |
|
50
8de63d56cf11
test_create_sequence
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
49
diff
changeset
|
2765 } |
|
8de63d56cf11
test_create_sequence
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
49
diff
changeset
|
2766 }))['ID'] |
|
8de63d56cf11
test_create_sequence
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
49
diff
changeset
|
2767 |
|
8de63d56cf11
test_create_sequence
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
49
diff
changeset
|
2768 self.assertEqual('Jodogne^', DoGet(_REMOTE, '/instances/%s/content/PatientName' % i)) |
|
8de63d56cf11
test_create_sequence
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
49
diff
changeset
|
2769 self.assertEqual('Hello^', DoGet(_REMOTE, '/instances/%s/content/ReferencedStudySequence/0/StudyDescription' % i)) |
|
8de63d56cf11
test_create_sequence
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
49
diff
changeset
|
2770 self.assertEqual('Toto', DoGet(_REMOTE, '/instances/%s/content/ReferencedStudySequence/0/ReferencedStudySequence/0/StudyDescription' % i)) |
|
8de63d56cf11
test_create_sequence
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
49
diff
changeset
|
2771 self.assertEqual('Tata', DoGet(_REMOTE, '/instances/%s/content/ReferencedStudySequence/0/ReferencedStudySequence/1/StudyDescription' % i)) |
|
8de63d56cf11
test_create_sequence
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
49
diff
changeset
|
2772 self.assertEqual(u'Sébastien^'.encode('latin-1'), |
|
8de63d56cf11
test_create_sequence
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
49
diff
changeset
|
2773 DoGet(_REMOTE, '/instances/%s/content/ReferencedStudySequence/1/StudyDescription' % i)) |
|
51
264a20a0276d
test_modify_sequence
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
50
diff
changeset
|
2774 |
|
264a20a0276d
test_modify_sequence
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
50
diff
changeset
|
2775 |
|
264a20a0276d
test_modify_sequence
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
50
diff
changeset
|
2776 def test_modify_sequence(self): |
|
264a20a0276d
test_modify_sequence
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
50
diff
changeset
|
2777 i = UploadInstance(_REMOTE, 'PrivateTags.dcm')['ID'] |
|
264a20a0276d
test_modify_sequence
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
50
diff
changeset
|
2778 self.assertRaises(Exception, lambda: DoGet(_REMOTE, '/instances/%s/content/ReferencedStudySequence' % i)) |
|
264a20a0276d
test_modify_sequence
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
50
diff
changeset
|
2779 |
|
264a20a0276d
test_modify_sequence
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
50
diff
changeset
|
2780 j = DoPost(_REMOTE, '/instances/%s/modify' % i, |
|
264a20a0276d
test_modify_sequence
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
50
diff
changeset
|
2781 json.dumps({ |
|
264a20a0276d
test_modify_sequence
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
50
diff
changeset
|
2782 "Replace" : { |
|
264a20a0276d
test_modify_sequence
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
50
diff
changeset
|
2783 "PatientName" : "hello", |
|
264a20a0276d
test_modify_sequence
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
50
diff
changeset
|
2784 'ReferencedStudySequence': GenerateTestSequence(), |
|
264a20a0276d
test_modify_sequence
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
50
diff
changeset
|
2785 }, |
|
264a20a0276d
test_modify_sequence
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
50
diff
changeset
|
2786 }), |
|
264a20a0276d
test_modify_sequence
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
50
diff
changeset
|
2787 'application/json') |
|
264a20a0276d
test_modify_sequence
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
50
diff
changeset
|
2788 j = DoPost(_REMOTE, '/instances', j, 'application/dicom')['ID'] |
|
264a20a0276d
test_modify_sequence
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
50
diff
changeset
|
2789 DoDelete(_REMOTE, '/instances/%s' % i) |
|
264a20a0276d
test_modify_sequence
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
50
diff
changeset
|
2790 |
| 52 | 2791 self.assertEqual(2, len(DoGet(_REMOTE, '/instances/%s/content/ReferencedStudySequence' % j))) |
| 2792 | |
| 2793 | |
| 2794 def test_compression(self): | |
| 2795 i = UploadInstance(_REMOTE, 'DummyCT.dcm')['ID'] | |
| 2796 | |
| 2797 data = DoGetRaw(_REMOTE, '/instances/%s/attachments/dicom-as-json/data' % i)[1] | |
| 2798 | |
| 2799 # "StorageCompression" is enabled in the Orthanc to be tested, | |
| 2800 # uncompress the data before running the test | |
| 2801 if DoGet(_REMOTE, '/instances/%s/attachments/dicom-as-json/is-compressed' % i) != 0: | |
| 2802 DoPost(_REMOTE, '/instances/%s/attachments/dicom-as-json/uncompress' % i) | |
| 2803 | |
| 2804 cs = DoGet(_REMOTE, '/statistics')['TotalDiskSize'] | |
| 2805 us = DoGet(_REMOTE, '/statistics')['TotalUncompressedSize'] | |
| 2806 size = DoGet(_REMOTE, '/instances/%s/attachments/dicom-as-json/size' % i) | |
| 2807 md5 = DoGet(_REMOTE, '/instances/%s/attachments/dicom-as-json/md5' % i) | |
| 2808 self.assertEqual(data, DoGetRaw(_REMOTE, '/instances/%s/attachments/dicom-as-json/compressed-data' % i)[1]) | |
| 2809 self.assertEqual(md5, DoGet(_REMOTE, '/instances/%s/attachments/dicom-as-json/compressed-md5' % i)) | |
| 2810 self.assertEqual(size, DoGet(_REMOTE, '/instances/%s/attachments/dicom-as-json/compressed-size' % i)) | |
| 2811 | |
| 2812 ops = DoGet(_REMOTE, '/instances/%s/attachments/dicom-as-json' % i) | |
| 2813 self.assertTrue('compress' in ops) | |
| 2814 self.assertTrue('uncompress' in ops) | |
| 2815 self.assertTrue('is-compressed' in ops) | |
| 2816 self.assertEqual(0, DoGet(_REMOTE, '/instances/%s/attachments/dicom-as-json/is-compressed' % i)) | |
| 2817 DoPost(_REMOTE, '/instances/%s/attachments/dicom-as-json/verify-md5' % i) | |
| 2818 | |
| 2819 DoPost(_REMOTE, '/instances/%s/attachments/dicom-as-json/compress' % i) | |
| 2820 DoPost(_REMOTE, '/instances/%s/attachments/dicom-as-json/verify-md5' % i) | |
| 2821 self.assertEqual(1, DoGet(_REMOTE, '/instances/%s/attachments/dicom-as-json/is-compressed' % i)) | |
| 2822 self.assertLess(cs, DoGet(_REMOTE, '/statistics')['TotalDiskSize']) | |
| 2823 self.assertEqual(us, DoGet(_REMOTE, '/statistics')['TotalUncompressedSize']) | |
| 2824 self.assertGreater(len(data), len(DoGetRaw(_REMOTE, '/instances/%s/attachments/dicom-as-json/compressed-data' % i)[1])) | |
| 2825 self.assertGreater(size, DoGet(_REMOTE, '/instances/%s/attachments/dicom-as-json/compressed-size' % i)) | |
| 2826 self.assertEqual(size, DoGet(_REMOTE, '/instances/%s/attachments/dicom-as-json/size' % i)) | |
| 2827 self.assertEqual(md5, DoGet(_REMOTE, '/instances/%s/attachments/dicom-as-json/md5' % i)) | |
| 2828 self.assertNotEqual(md5, DoGet(_REMOTE, '/instances/%s/attachments/dicom-as-json/compressed-md5' % i)) | |
| 2829 | |
| 2830 DoPost(_REMOTE, '/instances/%s/attachments/dicom-as-json/uncompress' % i) | |
| 2831 DoPost(_REMOTE, '/instances/%s/attachments/dicom-as-json/verify-md5' % i) | |
| 2832 self.assertEqual(0, DoGet(_REMOTE, '/instances/%s/attachments/dicom-as-json/is-compressed' % i)) | |
| 2833 self.assertEqual(data, DoGetRaw(_REMOTE, '/instances/%s/attachments/dicom-as-json/compressed-data' % i)[1]) | |
| 2834 self.assertEqual(size, DoGet(_REMOTE, '/instances/%s/attachments/dicom-as-json/compressed-size' % i)) | |
| 2835 self.assertEqual(size, DoGet(_REMOTE, '/instances/%s/attachments/dicom-as-json/size' % i)) | |
| 2836 self.assertEqual(md5, DoGet(_REMOTE, '/instances/%s/attachments/dicom-as-json/md5' % i)) | |
| 2837 self.assertEqual(md5, DoGet(_REMOTE, '/instances/%s/attachments/dicom-as-json/compressed-md5' % i)) | |
| 2838 self.assertEqual(cs, DoGet(_REMOTE, '/statistics')['TotalDiskSize']) | |
| 2839 self.assertEqual(us, DoGet(_REMOTE, '/statistics')['TotalUncompressedSize']) | |
| 53 | 2840 |
| 2841 | |
| 2842 def test_ordered_slices(self): | |
| 2843 i = UploadInstance(_REMOTE, 'Multiframe.dcm')['ID'] | |
| 2844 s = DoGet(_REMOTE, '/instances/%s' % i)['ParentSeries'] | |
| 2845 o = DoGet(_REMOTE, '/series/%s/ordered-slices' % s) | |
| 2846 self.assertEqual('Sequence', o['Type']) | |
| 2847 self.assertEqual(1, len(o['Dicom'])) | |
| 2848 self.assertEqual('/instances/9e05eb0a-18b6268c-e0d36085-8ddab517-3b5aec02/file', o['Dicom'][0]) | |
| 2849 self.assertEqual(76, len(o['Slices'])) | |
| 2850 for j in range(76): | |
| 2851 self.assertEqual('/instances/9e05eb0a-18b6268c-e0d36085-8ddab517-3b5aec02/frames/%d' % j, o['Slices'][j]) | |
| 2852 | |
| 68 | 2853 self.assertEqual(1, len(o['SlicesShort'])) |
| 2854 self.assertEqual('9e05eb0a-18b6268c-e0d36085-8ddab517-3b5aec02', o['SlicesShort'][0][0]) | |
| 2855 self.assertEqual(0, o['SlicesShort'][0][1]) | |
| 2856 self.assertEqual(76, o['SlicesShort'][0][2]) | |
| 2857 | |
| 53 | 2858 i = UploadInstance(_REMOTE, 'Brainix/Epi/IM-0001-0001.dcm')['ID'] |
| 2859 j = UploadInstance(_REMOTE, 'Brainix/Epi/IM-0001-0002.dcm')['ID'] | |
| 2860 k = UploadInstance(_REMOTE, 'Brainix/Epi/IM-0001-0003.dcm')['ID'] | |
| 2861 s = DoGet(_REMOTE, '/instances/%s' % i)['ParentSeries'] | |
| 2862 o = DoGet(_REMOTE, '/series/%s/ordered-slices' % s) | |
| 2863 | |
| 2864 self.assertEqual('Volume', o['Type']) | |
| 2865 self.assertEqual(3, len(o['Dicom'])) | |
| 2866 self.assertEqual(3, len(o['Slices'])) | |
| 2867 self.assertEqual('/instances/%s/file' % i, o['Dicom'][2]) | |
| 2868 self.assertEqual('/instances/%s/file' % j, o['Dicom'][1]) | |
| 2869 self.assertEqual('/instances/%s/file' % k, o['Dicom'][0]) | |
| 2870 self.assertEqual('/instances/%s/frames/0' % i, o['Slices'][2]) | |
| 2871 self.assertEqual('/instances/%s/frames/0' % j, o['Slices'][1]) | |
| 2872 self.assertEqual('/instances/%s/frames/0' % k, o['Slices'][0]) | |
| 2873 | |
| 68 | 2874 self.assertEqual(3, len(o['SlicesShort'])) |
| 2875 self.assertEqual(k, o['SlicesShort'][0][0]) | |
| 2876 self.assertEqual(0, o['SlicesShort'][0][1]) | |
| 2877 self.assertEqual(1, o['SlicesShort'][0][2]) | |
| 2878 self.assertEqual(j, o['SlicesShort'][1][0]) | |
| 2879 self.assertEqual(0, o['SlicesShort'][1][1]) | |
| 2880 self.assertEqual(1, o['SlicesShort'][1][2]) | |
| 2881 self.assertEqual(i, o['SlicesShort'][2][0]) | |
| 2882 self.assertEqual(0, o['SlicesShort'][2][1]) | |
| 2883 self.assertEqual(1, o['SlicesShort'][2][2]) | |
| 2884 | |
| 53 | 2885 i = UploadInstance(_REMOTE, 'Beaufix/IM-0001-0001.dcm')['ID'] |
| 2886 j = UploadInstance(_REMOTE, 'Beaufix/IM-0001-0002.dcm')['ID'] | |
| 2887 s = DoGet(_REMOTE, '/instances/%s' % i)['ParentSeries'] | |
| 2888 o = DoGet(_REMOTE, '/series/%s/ordered-slices' % s) | |
| 2889 | |
| 2890 self.assertEqual('Sequence', o['Type']) | |
| 2891 self.assertEqual(2, len(o['Dicom'])) | |
| 2892 self.assertEqual(2, len(o['Slices'])) | |
| 2893 self.assertEqual('/instances/%s/file' % i, o['Dicom'][0]) | |
| 2894 self.assertEqual('/instances/%s/file' % j, o['Dicom'][1]) | |
| 2895 self.assertEqual('/instances/%s/frames/0' % i, o['Slices'][0]) | |
| 2896 self.assertEqual('/instances/%s/frames/0' % j, o['Slices'][1]) | |
|
54
c5f8a6b0d85e
test_incoming_movescu_accession
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
53
diff
changeset
|
2897 |
| 68 | 2898 self.assertEqual(2, len(o['SlicesShort'])) |
| 2899 self.assertEqual(i, o['SlicesShort'][0][0]) | |
| 2900 self.assertEqual(0, o['SlicesShort'][0][1]) | |
| 2901 self.assertEqual(1, o['SlicesShort'][0][2]) | |
| 2902 self.assertEqual(j, o['SlicesShort'][1][0]) | |
| 2903 self.assertEqual(0, o['SlicesShort'][1][1]) | |
| 2904 self.assertEqual(1, o['SlicesShort'][1][2]) | |
| 2905 | |
| 2906 | |
|
54
c5f8a6b0d85e
test_incoming_movescu_accession
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
53
diff
changeset
|
2907 |
|
c5f8a6b0d85e
test_incoming_movescu_accession
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
53
diff
changeset
|
2908 def test_incoming_movescu_accession(self): |
|
c5f8a6b0d85e
test_incoming_movescu_accession
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
53
diff
changeset
|
2909 UploadInstance(_REMOTE, 'Knee/T1/IM-0001-0001.dcm') |
|
c5f8a6b0d85e
test_incoming_movescu_accession
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
53
diff
changeset
|
2910 |
|
137
412d5f70447e
testing asynchronous c-move
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
136
diff
changeset
|
2911 # No matching patient, so no job is created |
|
54
c5f8a6b0d85e
test_incoming_movescu_accession
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
53
diff
changeset
|
2912 self.assertEqual(0, len(DoGet(_LOCAL, '/patients'))) |
|
c5f8a6b0d85e
test_incoming_movescu_accession
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
53
diff
changeset
|
2913 CallMoveScu([ '--study', '-k', '0008,0052=STUDY', '-k', 'AccessionNumber=nope' ]) |
|
c5f8a6b0d85e
test_incoming_movescu_accession
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
53
diff
changeset
|
2914 self.assertEqual(0, len(DoGet(_LOCAL, '/patients'))) |
|
c5f8a6b0d85e
test_incoming_movescu_accession
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
53
diff
changeset
|
2915 CallMoveScu([ '--study', '-k', '0008,0052=PATIENT', '-k', 'AccessionNumber=A10003245599' ]) |
|
c5f8a6b0d85e
test_incoming_movescu_accession
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
53
diff
changeset
|
2916 self.assertEqual(0, len(DoGet(_LOCAL, '/patients'))) |
|
137
412d5f70447e
testing asynchronous c-move
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
136
diff
changeset
|
2917 |
|
412d5f70447e
testing asynchronous c-move
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
136
diff
changeset
|
2918 # 1 Matching patient, track the job |
| 138 | 2919 self.assertTrue(MonitorJob(_REMOTE, lambda: CallMoveScu([ |
| 2920 '--study', | |
| 2921 '-k', '0008,0052=STUDY', | |
| 2922 '-k', 'AccessionNumber=A10003245599' | |
| 2923 ]))) | |
|
137
412d5f70447e
testing asynchronous c-move
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
136
diff
changeset
|
2924 |
|
54
c5f8a6b0d85e
test_incoming_movescu_accession
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
53
diff
changeset
|
2925 self.assertEqual(1, len(DoGet(_LOCAL, '/patients'))) |
|
c5f8a6b0d85e
test_incoming_movescu_accession
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
53
diff
changeset
|
2926 |
| 55 | 2927 |
| 2928 def test_dicom_to_json(self): | |
| 2929 i = UploadInstance(_REMOTE, 'PrivateMDNTags.dcm')['ID'] | |
|
60
cd3c7f70f139
test backward compatibility with Orthanc 0.9.4
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
59
diff
changeset
|
2930 j = UploadInstance(_REMOTE, 'PrivateTags.dcm')['ID'] |
|
cd3c7f70f139
test backward compatibility with Orthanc 0.9.4
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
59
diff
changeset
|
2931 |
|
cd3c7f70f139
test backward compatibility with Orthanc 0.9.4
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
59
diff
changeset
|
2932 t = DoGet(_REMOTE, '/instances/%s/tags?simplify' % i) |
|
cd3c7f70f139
test backward compatibility with Orthanc 0.9.4
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
59
diff
changeset
|
2933 with open(GetDatabasePath('PrivateMDNTagsSimplify.json'), 'r') as f: |
|
80
8466dbfcb22b
fix test against dcmtk 3.6.1
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
79
diff
changeset
|
2934 self.assertTrue(CompareTags(t, json.loads(f.read()), [ |
| 123 | 2935 # Tags for compatibility with DCMTK 3.6.0 |
| 2936 'RETIRED_OtherPatientIDs', | |
| 2937 'OtherPatientIDs', | |
| 2938 'ACR_NEMA_2C_VariablePixelDataGroupLength', | |
|
80
8466dbfcb22b
fix test against dcmtk 3.6.1
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
79
diff
changeset
|
2939 ])) |
| 55 | 2940 |
| 2941 t = DoGet(_REMOTE, '/instances/%s/tags' % i) | |
| 2942 with open(GetDatabasePath('PrivateMDNTagsFull.json'), 'r') as f: | |
|
87
4b24faec842b
test_reconstruct_json2 + test_private_tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
86
diff
changeset
|
2943 self.assertTrue(CompareTags(t, json.loads(f.read()), [ |
|
4b24faec842b
test_reconstruct_json2 + test_private_tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
86
diff
changeset
|
2944 ])) |
| 55 | 2945 |
|
60
cd3c7f70f139
test backward compatibility with Orthanc 0.9.4
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
59
diff
changeset
|
2946 t = DoGet(_REMOTE, '/instances/%s/tags?simplify' % j) |
|
cd3c7f70f139
test backward compatibility with Orthanc 0.9.4
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
59
diff
changeset
|
2947 with open(GetDatabasePath('PrivateTagsSimplify.json'), 'r') as f: |
|
80
8466dbfcb22b
fix test against dcmtk 3.6.1
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
79
diff
changeset
|
2948 self.assertTrue(CompareTags(t, json.loads(f.read()), [ |
|
8466dbfcb22b
fix test against dcmtk 3.6.1
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
79
diff
changeset
|
2949 ])) |
|
60
cd3c7f70f139
test backward compatibility with Orthanc 0.9.4
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
59
diff
changeset
|
2950 |
|
372
e9b03d8f3b78
fix for DCMTK 3.6.6
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
369
diff
changeset
|
2951 |
|
e9b03d8f3b78
fix for DCMTK 3.6.6
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
369
diff
changeset
|
2952 # NB: To get the actual value of the "tags" JSON file, use the |
|
e9b03d8f3b78
fix for DCMTK 3.6.6
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
369
diff
changeset
|
2953 # following command: |
|
e9b03d8f3b78
fix for DCMTK 3.6.6
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
369
diff
changeset
|
2954 # $ curl http://alice:orthanctest@localhost:8042/instances/d29ead49-43e8601d-72f1e922-7de676ee-ea77c2b4/tags |
|
60
cd3c7f70f139
test backward compatibility with Orthanc 0.9.4
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
59
diff
changeset
|
2955 t = DoGet(_REMOTE, '/instances/%s/tags' % j) |
|
cd3c7f70f139
test backward compatibility with Orthanc 0.9.4
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
59
diff
changeset
|
2956 with open(GetDatabasePath('PrivateTagsFull.json'), 'r') as f: |
|
cd3c7f70f139
test backward compatibility with Orthanc 0.9.4
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
59
diff
changeset
|
2957 a = json.loads(f.read()) |
|
65
09fc27e0899a
patch for testing windows builds
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
64
diff
changeset
|
2958 aa = json.dumps(a).replace('2e+022', '2e+22') |
|
372
e9b03d8f3b78
fix for DCMTK 3.6.6
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
369
diff
changeset
|
2959 tt = (json.dumps(t) |
|
e9b03d8f3b78
fix for DCMTK 3.6.6
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
369
diff
changeset
|
2960 .replace('2e+022', '2e+22') |
|
e9b03d8f3b78
fix for DCMTK 3.6.6
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
369
diff
changeset
|
2961 # The "IllegalPrivatePixelSequence" tag was introduced in DCMTK 3.6.6 dictionary |
|
e9b03d8f3b78
fix for DCMTK 3.6.6
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
369
diff
changeset
|
2962 .replace('IllegalPrivatePixelSequence', 'Unknown Tag & Data')) |
|
65
09fc27e0899a
patch for testing windows builds
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
64
diff
changeset
|
2963 self.assertEqual(aa, tt) |
| 57 | 2964 |
| 2965 | |
| 2966 def test_batch_archive(self): | |
| 2967 UploadInstance(_REMOTE, 'Knee/T1/IM-0001-0001.dcm') | |
| 2968 UploadInstance(_REMOTE, 'Knee/T1/IM-0001-0002.dcm') | |
| 2969 UploadInstance(_REMOTE, 'Knee/T2/IM-0001-0001.dcm') | |
| 2970 UploadInstance(_REMOTE, 'Knee/T2/IM-0001-0002.dcm') | |
| 2971 UploadInstance(_REMOTE, 'Brainix/Epi/IM-0001-0001.dcm') | |
| 2972 UploadInstance(_REMOTE, 'Brainix/Epi/IM-0001-0002.dcm') | |
| 2973 UploadInstance(_REMOTE, 'Brainix/Flair/IM-0001-0001.dcm') | |
| 2974 UploadInstance(_REMOTE, 'Brainix/Flair/IM-0001-0002.dcm') | |
| 2975 | |
| 2976 s = DoPost(_REMOTE, '/tools/create-archive', [ ]) | |
| 2977 z = zipfile.ZipFile(StringIO(s), "r") | |
| 2978 self.assertEqual(0, len(z.namelist())) | |
| 2979 | |
| 2980 # One patient | |
| 2981 s = DoPost(_REMOTE, '/tools/create-archive', [ 'ca29faea-b6a0e17f-067743a1-8b778011-a48b2a17' ]) | |
| 2982 z = zipfile.ZipFile(StringIO(s), "r") | |
| 2983 self.assertEqual(4, len(z.namelist())) | |
| 2984 | |
| 2985 # One patient + twice its study + one series from other patient | |
| 2986 s = DoPost(_REMOTE, '/tools/create-archive', [ | |
| 2987 'ca29faea-b6a0e17f-067743a1-8b778011-a48b2a17', | |
| 2988 '0a9b3153-2512774b-2d9580de-1fc3dcf6-3bd83918', | |
| 2989 '1e2c125c-411b8e86-3f4fe68e-a7584dd3-c6da78f0' | |
| 2990 ]) | |
| 2991 z = zipfile.ZipFile(StringIO(s), "r") | |
| 2992 self.assertEqual(6, len(z.namelist())) | |
| 2993 | |
| 2994 # One patient + one series + one instance | |
| 2995 s = DoPost(_REMOTE, '/tools/create-archive', [ | |
| 2996 'ca29faea-b6a0e17f-067743a1-8b778011-a48b2a17', | |
| 2997 '1e2c125c-411b8e86-3f4fe68e-a7584dd3-c6da78f0', | |
| 2998 '1d429ccb-bdcc78a1-7d129d6a-ba4966ed-fe4dbd87' | |
| 2999 ]) | |
| 3000 z = zipfile.ZipFile(StringIO(s), "r") | |
| 3001 self.assertEqual(7, len(z.namelist())) | |
|
59
84378ada15ab
test_decode_brainix_as_jpeg
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
58
diff
changeset
|
3002 |
|
84378ada15ab
test_decode_brainix_as_jpeg
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
58
diff
changeset
|
3003 |
|
84378ada15ab
test_decode_brainix_as_jpeg
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
58
diff
changeset
|
3004 def test_decode_brainix_as_jpeg(self): |
|
84378ada15ab
test_decode_brainix_as_jpeg
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
58
diff
changeset
|
3005 i = UploadInstance(_REMOTE, 'Brainix/Epi/IM-0001-0001.dcm')['ID'] |
|
84378ada15ab
test_decode_brainix_as_jpeg
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
58
diff
changeset
|
3006 |
|
84378ada15ab
test_decode_brainix_as_jpeg
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
58
diff
changeset
|
3007 j = GetImage(_REMOTE, '/instances/%s/preview' % i) |
|
84378ada15ab
test_decode_brainix_as_jpeg
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
58
diff
changeset
|
3008 self.assertEqual('PNG', j.format) |
|
84378ada15ab
test_decode_brainix_as_jpeg
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
58
diff
changeset
|
3009 self.assertEqual(j.size[0], 256) |
|
84378ada15ab
test_decode_brainix_as_jpeg
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
58
diff
changeset
|
3010 self.assertEqual(j.size[1], 256) |
|
84378ada15ab
test_decode_brainix_as_jpeg
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
58
diff
changeset
|
3011 |
|
84378ada15ab
test_decode_brainix_as_jpeg
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
58
diff
changeset
|
3012 j = GetImage(_REMOTE, '/instances/%s/preview' % i, headers = { 'Accept' : '*/*' }) |
|
84378ada15ab
test_decode_brainix_as_jpeg
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
58
diff
changeset
|
3013 self.assertEqual('PNG', j.format) |
|
84378ada15ab
test_decode_brainix_as_jpeg
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
58
diff
changeset
|
3014 |
|
84378ada15ab
test_decode_brainix_as_jpeg
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
58
diff
changeset
|
3015 j = GetImage(_REMOTE, '/instances/%s/preview' % i, headers = { 'Accept' : 'image/*' }) |
|
84378ada15ab
test_decode_brainix_as_jpeg
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
58
diff
changeset
|
3016 self.assertEqual('PNG', j.format) |
|
84378ada15ab
test_decode_brainix_as_jpeg
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
58
diff
changeset
|
3017 |
|
84378ada15ab
test_decode_brainix_as_jpeg
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
58
diff
changeset
|
3018 j = GetImage(_REMOTE, '/instances/%s/preview' % i, headers = { 'Accept' : 'image/png' }) |
|
84378ada15ab
test_decode_brainix_as_jpeg
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
58
diff
changeset
|
3019 self.assertEqual('PNG', j.format) |
|
84378ada15ab
test_decode_brainix_as_jpeg
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
58
diff
changeset
|
3020 |
|
84378ada15ab
test_decode_brainix_as_jpeg
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
58
diff
changeset
|
3021 j = GetImage(_REMOTE, '/instances/%s/preview' % i, headers = { 'Accept' : 'image/jpeg' }) |
|
84378ada15ab
test_decode_brainix_as_jpeg
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
58
diff
changeset
|
3022 self.assertEqual('JPEG', j.format) |
|
84378ada15ab
test_decode_brainix_as_jpeg
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
58
diff
changeset
|
3023 self.assertEqual(j.size[0], 256) |
|
84378ada15ab
test_decode_brainix_as_jpeg
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
58
diff
changeset
|
3024 self.assertEqual(j.size[1], 256) |
|
84378ada15ab
test_decode_brainix_as_jpeg
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
58
diff
changeset
|
3025 |
|
84378ada15ab
test_decode_brainix_as_jpeg
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
58
diff
changeset
|
3026 a = len(DoGet(_REMOTE, '/instances/%s/preview?quality=50' % i, headers = { 'Accept' : 'image/jpeg' })) |
|
84378ada15ab
test_decode_brainix_as_jpeg
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
58
diff
changeset
|
3027 b = len(DoGet(_REMOTE, '/instances/%s/preview' % i, headers = { 'Accept' : 'image/jpeg' })) |
|
84378ada15ab
test_decode_brainix_as_jpeg
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
58
diff
changeset
|
3028 self.assertLess(a, b) |
|
84378ada15ab
test_decode_brainix_as_jpeg
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
58
diff
changeset
|
3029 |
|
84378ada15ab
test_decode_brainix_as_jpeg
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
58
diff
changeset
|
3030 j = GetImage(_REMOTE, '/instances/%s/image-uint8' % i, headers = { 'Accept' : 'image/jpeg' }) |
|
84378ada15ab
test_decode_brainix_as_jpeg
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
58
diff
changeset
|
3031 self.assertEqual('JPEG', j.format) |
|
84378ada15ab
test_decode_brainix_as_jpeg
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
58
diff
changeset
|
3032 |
|
84378ada15ab
test_decode_brainix_as_jpeg
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
58
diff
changeset
|
3033 # 16bit encoding is not supported with JPEG |
|
84378ada15ab
test_decode_brainix_as_jpeg
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
58
diff
changeset
|
3034 self.assertRaises(Exception, lambda: GetImage(_REMOTE, '/instances/%s/image-uint16' % i, headers = { 'Accept' : 'image/jpeg' })) |
|
84378ada15ab
test_decode_brainix_as_jpeg
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
58
diff
changeset
|
3035 self.assertRaises(Exception, lambda: GetImage(_REMOTE, '/instances/%s/image-int16' % i, headers = { 'Accept' : 'image/jpeg' })) |
|
84378ada15ab
test_decode_brainix_as_jpeg
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
58
diff
changeset
|
3036 |
|
84378ada15ab
test_decode_brainix_as_jpeg
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
58
diff
changeset
|
3037 # No matching content type |
|
84378ada15ab
test_decode_brainix_as_jpeg
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
58
diff
changeset
|
3038 self.assertRaises(Exception, lambda: GetImage(_REMOTE, '/instances/%s/preview' % i, headers = { 'Accept' : 'application/pdf' })) |
|
69
83fd88230097
test_media_encodings
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
68
diff
changeset
|
3039 |
|
83fd88230097
test_media_encodings
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
68
diff
changeset
|
3040 |
|
83fd88230097
test_media_encodings
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
68
diff
changeset
|
3041 |
|
83fd88230097
test_media_encodings
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
68
diff
changeset
|
3042 def test_media_encodings(self): |
|
83fd88230097
test_media_encodings
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
68
diff
changeset
|
3043 ascii = UploadInstance(_REMOTE, 'Knee/T1/IM-0001-0001.dcm')['ID'] |
|
83fd88230097
test_media_encodings
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
68
diff
changeset
|
3044 latin1 = UploadInstance(_REMOTE, 'Brainix/Epi/IM-0001-0001.dcm')['ID'] |
|
83fd88230097
test_media_encodings
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
68
diff
changeset
|
3045 latin2 = UploadInstance(_REMOTE, 'MarekLatin2.dcm')['ID'] |
|
83fd88230097
test_media_encodings
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
68
diff
changeset
|
3046 |
|
83fd88230097
test_media_encodings
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
68
diff
changeset
|
3047 tmp = DoPost(_REMOTE, '/tools/create-media', [ascii,latin1,latin2]) |
|
83fd88230097
test_media_encodings
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
68
diff
changeset
|
3048 z = zipfile.ZipFile(StringIO(tmp), "r") |
|
83fd88230097
test_media_encodings
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
68
diff
changeset
|
3049 |
|
83fd88230097
test_media_encodings
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
68
diff
changeset
|
3050 self.assertEqual(4, len(z.namelist())) |
|
83fd88230097
test_media_encodings
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
68
diff
changeset
|
3051 self.assertTrue('IMAGES/IM0' in z.namelist()) |
|
83fd88230097
test_media_encodings
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
68
diff
changeset
|
3052 self.assertTrue('IMAGES/IM1' in z.namelist()) |
|
83fd88230097
test_media_encodings
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
68
diff
changeset
|
3053 self.assertTrue('IMAGES/IM2' in z.namelist()) |
|
83fd88230097
test_media_encodings
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
68
diff
changeset
|
3054 self.assertTrue('DICOMDIR' in z.namelist()) |
|
83fd88230097
test_media_encodings
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
68
diff
changeset
|
3055 |
|
83fd88230097
test_media_encodings
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
68
diff
changeset
|
3056 try: |
|
83fd88230097
test_media_encodings
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
68
diff
changeset
|
3057 os.remove('/tmp/DICOMDIR') |
|
83fd88230097
test_media_encodings
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
68
diff
changeset
|
3058 except: |
|
83fd88230097
test_media_encodings
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
68
diff
changeset
|
3059 # The file does not exist |
|
83fd88230097
test_media_encodings
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
68
diff
changeset
|
3060 pass |
|
83fd88230097
test_media_encodings
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
68
diff
changeset
|
3061 |
|
83fd88230097
test_media_encodings
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
68
diff
changeset
|
3062 z.extract('DICOMDIR', '/tmp') |
|
83fd88230097
test_media_encodings
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
68
diff
changeset
|
3063 a = subprocess.check_output([ FindExecutable('dciodvfy'), '/tmp/DICOMDIR' ], |
|
83fd88230097
test_media_encodings
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
68
diff
changeset
|
3064 stderr = subprocess.STDOUT).split('\n') |
|
83fd88230097
test_media_encodings
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
68
diff
changeset
|
3065 |
|
83fd88230097
test_media_encodings
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
68
diff
changeset
|
3066 a = subprocess.check_output([ FindExecutable('dcentvfy'), '/tmp/DICOMDIR' ], |
|
83fd88230097
test_media_encodings
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
68
diff
changeset
|
3067 stderr = subprocess.STDOUT).split('\n') |
|
83fd88230097
test_media_encodings
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
68
diff
changeset
|
3068 self.assertEqual(1, len(a)) |
|
83fd88230097
test_media_encodings
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
68
diff
changeset
|
3069 self.assertEqual('', a[0]) |
|
83fd88230097
test_media_encodings
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
68
diff
changeset
|
3070 |
|
83fd88230097
test_media_encodings
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
68
diff
changeset
|
3071 a = subprocess.check_output([ FindExecutable('dcm2xml'), '/tmp/DICOMDIR' ]) |
|
83fd88230097
test_media_encodings
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
68
diff
changeset
|
3072 self.assertTrue(re.search('1.3.46.670589.11.17521.5.0.3124.2008081908590448738', a) != None) |
|
83fd88230097
test_media_encodings
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
68
diff
changeset
|
3073 self.assertTrue(re.search('1.3.46.670589.11.0.0.11.4.2.0.8743.5.5396.2006120114333648576', a) != None) |
|
83fd88230097
test_media_encodings
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
68
diff
changeset
|
3074 self.assertTrue(re.search('1.2.826.0.1.3680043.2.1569.1.4.323026757.1700.1399452091.57', a) != None) |
|
83fd88230097
test_media_encodings
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
68
diff
changeset
|
3075 |
|
83fd88230097
test_media_encodings
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
68
diff
changeset
|
3076 os.remove('/tmp/DICOMDIR') |
|
71
48740070cbf1
TDD: tests for ongoing development of counter tags in C-Find
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
70
diff
changeset
|
3077 |
|
48740070cbf1
TDD: tests for ongoing development of counter tags in C-Find
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
70
diff
changeset
|
3078 |
|
48740070cbf1
TDD: tests for ongoing development of counter tags in C-Find
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
70
diff
changeset
|
3079 def test_findscu_counters(self): |
|
48740070cbf1
TDD: tests for ongoing development of counter tags in C-Find
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
70
diff
changeset
|
3080 UploadInstance(_REMOTE, 'Comunix/Ct/IM-0001-0001.dcm') |
|
48740070cbf1
TDD: tests for ongoing development of counter tags in C-Find
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
70
diff
changeset
|
3081 UploadInstance(_REMOTE, 'Comunix/Pet/IM-0001-0001.dcm') |
|
48740070cbf1
TDD: tests for ongoing development of counter tags in C-Find
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
70
diff
changeset
|
3082 UploadInstance(_REMOTE, 'Comunix/Pet/IM-0001-0002.dcm') |
|
48740070cbf1
TDD: tests for ongoing development of counter tags in C-Find
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
70
diff
changeset
|
3083 |
|
48740070cbf1
TDD: tests for ongoing development of counter tags in C-Find
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
70
diff
changeset
|
3084 i = CallFindScu([ '-k', '0008,0052=PATIENT', '-k', 'NumberOfPatientRelatedStudies' ]) |
|
48740070cbf1
TDD: tests for ongoing development of counter tags in C-Find
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
70
diff
changeset
|
3085 s = re.findall('\(0020,1200\).*?\[(.*?)\]', i) |
|
48740070cbf1
TDD: tests for ongoing development of counter tags in C-Find
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
70
diff
changeset
|
3086 self.assertEqual(1, len(s)) |
|
48740070cbf1
TDD: tests for ongoing development of counter tags in C-Find
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
70
diff
changeset
|
3087 self.assertTrue('1 ' in s) |
|
48740070cbf1
TDD: tests for ongoing development of counter tags in C-Find
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diff
changeset
|
3088 |
|
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diff
changeset
|
3089 i = CallFindScu([ '-k', '0008,0052=PATIENT', '-k', 'NumberOfPatientRelatedSeries' ]) |
|
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diff
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|
3090 s = re.findall('\(0020,1202\).*?\[(.*?)\]', i) |
|
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diff
changeset
|
3091 self.assertEqual(1, len(s)) |
|
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diff
changeset
|
3092 self.assertTrue('2 ' in s) |
|
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diff
changeset
|
3093 |
|
48740070cbf1
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diff
changeset
|
3094 i = CallFindScu([ '-k', '0008,0052=PATIENT', '-k', 'NumberOfPatientRelatedInstances' ]) |
|
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changeset
|
3095 s = re.findall('\(0020,1204\).*?\[(.*?)\]', i) |
|
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diff
changeset
|
3096 self.assertEqual(1, len(s)) |
|
48740070cbf1
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diff
changeset
|
3097 self.assertTrue('3 ' in s) |
|
48740070cbf1
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parents:
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diff
changeset
|
3098 |
|
48740070cbf1
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diff
changeset
|
3099 i = CallFindScu([ '-k', '0008,0052=STUDY', '-k', 'NumberOfStudyRelatedSeries' ]) |
|
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|
3100 s = re.findall('\(0020,1206\).*?\[(.*?)\]', i) |
|
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diff
changeset
|
3101 self.assertEqual(1, len(s)) |
|
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diff
changeset
|
3102 self.assertTrue('2 ' in s) |
|
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diff
changeset
|
3103 |
|
48740070cbf1
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diff
changeset
|
3104 i = CallFindScu([ '-k', '0008,0052=STUDY', '-k', 'NumberOfStudyRelatedInstances' ]) |
|
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|
3105 s = re.findall('\(0020,1208\).*?\[(.*?)\]', i) |
|
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diff
changeset
|
3106 self.assertEqual(1, len(s)) |
|
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diff
changeset
|
3107 self.assertTrue('3 ' in s) |
|
48740070cbf1
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parents:
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diff
changeset
|
3108 |
|
48740070cbf1
TDD: tests for ongoing development of counter tags in C-Find
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diff
changeset
|
3109 i = CallFindScu([ '-k', '0008,0052=SERIES', '-k', 'NumberOfSeriesRelatedInstances' ]) |
|
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parents:
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diff
changeset
|
3110 s = re.findall('\(0020,1209\).*?\[(.*?)\]', i) |
|
48740070cbf1
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Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
changeset
|
3111 self.assertEqual(2, len(s)) |
|
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parents:
70
diff
changeset
|
3112 self.assertTrue('1 ' in s) |
|
48740070cbf1
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parents:
70
diff
changeset
|
3113 self.assertTrue('2 ' in s) |
|
48740070cbf1
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parents:
70
diff
changeset
|
3114 |
|
48740070cbf1
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diff
changeset
|
3115 i = CallFindScu([ '-k', '0008,0052=STUDY', '-k', 'ModalitiesInStudy' ]) |
|
48740070cbf1
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|
3116 s = re.findall('\(0008,0061\).*?\[(.*?)\]', i) |
|
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changeset
|
3117 self.assertEqual(1, len(s)) |
|
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changeset
|
3118 t = map(lambda x: x.strip(), s[0].split('\\')) |
|
48740070cbf1
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Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
changeset
|
3119 self.assertTrue('PT' in t) |
|
48740070cbf1
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parents:
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diff
changeset
|
3120 self.assertTrue('CT' in t) |
|
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changeset
|
3121 |
|
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|
3122 i = CallFindScu([ '-k', '0008,0052=STUDY', '-k', 'SOPClassesInStudy' ]) |
|
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|
3123 s = re.findall('\(0008,0062\).*?\[(.*?)\]', i) |
|
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|
3124 self.assertEqual(1, len(s)) |
|
176
48cc188ffb09
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am@osimis.io
parents:
175
diff
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|
3125 t = map(lambda x: x.strip('\x00'), s[0].split('\\')) |
|
71
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|
3126 self.assertTrue('1.2.840.10008.5.1.4.1.1.2' in t) |
|
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|
3127 self.assertTrue('1.2.840.10008.5.1.4.1.1.128' in t) |
|
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|
3128 |
|
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diff
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|
3129 |
|
78
b89af51797ff
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diff
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|
3130 def test_decode_transfer_syntax(self): |
|
b89af51797ff
test_decode_transfer_syntax
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diff
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|
3131 def Check(t, md5): |
|
b89af51797ff
test_decode_transfer_syntax
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diff
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|
3132 i = UploadInstance(_REMOTE, 'TransferSyntaxes/%s.dcm' % t)['ID'] |
|
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|
3133 |
|
89
74b7b9aed5f8
test TransferSyntax metadata
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diff
changeset
|
3134 if t != '1.2.840.10008.1.2': # This file has no meta header |
|
74b7b9aed5f8
test TransferSyntax metadata
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diff
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|
3135 transferSyntax = DoGet(_REMOTE, '/instances/%s/metadata/TransferSyntax' % i) |
|
74b7b9aed5f8
test TransferSyntax metadata
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diff
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|
3136 self.assertEqual(t, transferSyntax) |
|
74b7b9aed5f8
test TransferSyntax metadata
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|
3137 |
|
78
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diff
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|
3138 if md5 == None: |
|
b89af51797ff
test_decode_transfer_syntax
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74
diff
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|
3139 self.assertRaises(Exception, lambda: DoGet(_REMOTE, '/instances/%s/preview' % i)) |
|
b89af51797ff
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|
3140 else: |
|
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diff
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|
3141 m = ComputeMD5(DoGet(_REMOTE, '/instances/%s/preview' % i)) |
|
b89af51797ff
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|
3142 self.assertEqual(m, md5) |
|
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diff
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|
3143 |
|
b89af51797ff
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Sebastien Jodogne <s.jodogne@gmail.com>
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74
diff
changeset
|
3144 Check('1.2.840.10008.1.2.1', 'fae08d5415c4c0cd2cdbae4522408631') |
|
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|
3145 Check('1.2.840.10008.1.2.2', 'f3d9784768b8feb54d6a50b6d5c37682') |
| 323 | 3146 Check('1.2.840.10008.1.2.4.50', '496326046974eea718dbc16b997c646b') # TODO - Doesn't work with GDCM 3.0.7 alone |
|
78
b89af51797ff
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74
diff
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|
3147 Check('1.2.840.10008.1.2.4.51', 'ccbe75909fe5c9f7361b48416a53fc41') |
|
b89af51797ff
test_decode_transfer_syntax
Sebastien Jodogne <s.jodogne@gmail.com>
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74
diff
changeset
|
3148 Check('1.2.840.10008.1.2.4.57', '7bbefe11d976b1be4e568915c6a82fc3') |
|
b89af51797ff
test_decode_transfer_syntax
Sebastien Jodogne <s.jodogne@gmail.com>
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74
diff
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|
3149 Check('1.2.840.10008.1.2.4.70', '7132cfbc457305b04b59787030c785d2') |
|
b89af51797ff
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|
3150 Check('1.2.840.10008.1.2.4.80', '6ff51ae525d362e0d04f550a64075a0e') |
|
b89af51797ff
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Sebastien Jodogne <s.jodogne@gmail.com>
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74
diff
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|
3151 Check('1.2.840.10008.1.2.4.81', '801579ae7cbf28e604ea74f2c99fa2ca') |
|
b89af51797ff
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74
diff
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|
3152 Check('1.2.840.10008.1.2.5', '6ff51ae525d362e0d04f550a64075a0e') # RLE, supported since Orthanc 1.0.1 |
|
b89af51797ff
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Sebastien Jodogne <s.jodogne@gmail.com>
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74
diff
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|
3153 Check('1.2.840.10008.1.2', 'd54aed9f67a100984b42942cc2e9939b') |
|
299
c2144cf4bd83
HasGdcmPlugin() test
Sebastien Jodogne <s.jodogne@gmail.com>
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293
diff
changeset
|
3154 |
|
c2144cf4bd83
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293
diff
changeset
|
3155 # JPEG2k image, not supported without GDCM plugin |
| 304 | 3156 if not HasGdcmPlugin(_REMOTE): |
|
299
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293
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|
3157 Check('1.2.840.10008.1.2.4.90', None) |
|
c2144cf4bd83
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|
3158 Check('1.2.840.10008.1.2.4.91', None) |
| 79 | 3159 |
| 3160 | |
| 3161 def test_raw_frame(self): | |
| 3162 s = UploadInstance(_REMOTE, 'Issue22.dcm')['ID'] | |
| 3163 self.assertEqual(24, len(DoGet(_REMOTE, '/instances/%s/frames' % s))) | |
| 3164 a = DoGet(_REMOTE, '/instances/%s/frames/0/raw' % s) | |
| 3165 self.assertEqual(512 * 512 * 2, len(a)) | |
| 3166 self.assertEqual(512 * 512 * 2, len(DoGet(_REMOTE, '/instances/%s/frames/23/raw' % s))) | |
| 3167 self.assertRaises(Exception, lambda: DoGet(_REMOTE, '/instances/%s/frames/24/raw' % s)) | |
| 3168 self.assertEqual('1914287dc4d958eca21fdaacfb3482fa', ComputeMD5(a)) | |
| 3169 | |
| 3170 s = UploadInstance(_REMOTE, 'Multiframe.dcm')['ID'] | |
| 3171 self.assertEqual(76, len(DoGet(_REMOTE, '/instances/%s/frames' % s))) | |
| 3172 self.assertEqual(186274, len(DoGet(_REMOTE, '/instances/%s/frames/0/raw' % s))) | |
| 3173 self.assertEqual(189424, len(DoGet(_REMOTE, '/instances/%s/frames/75/raw' % s))) | |
| 3174 self.assertRaises(Exception, lambda: DoGet(_REMOTE, '/instances/%s/frames/76/raw' % s)) | |
| 3175 im = GetImage(_REMOTE, '/instances/%s/frames/0/raw' % s) | |
| 3176 self.assertEqual("L", im.mode) | |
| 3177 self.assertEqual(512, im.size[0]) | |
| 3178 self.assertEqual(512, im.size[1]) | |
| 3179 | |
| 3180 # Test an image with 2 JPEG frames spread over multiple fragments | |
| 3181 s = UploadInstance(_REMOTE, 'LenaTwiceWithFragments.dcm')['ID'] | |
| 3182 self.assertEqual(2, len(DoGet(_REMOTE, '/instances/%s/frames' % s))) | |
| 3183 a = DoGet(_REMOTE, '/instances/%s/frames/0/raw' % s) | |
| 3184 b = DoGet(_REMOTE, '/instances/%s/frames/1/raw' % s) | |
| 3185 self.assertEqual(69214, len(a)) | |
| 3186 self.assertEqual(ComputeMD5(a), ComputeMD5(b)) | |
| 3187 self.assertRaises(Exception, lambda: DoGet(_REMOTE, '/instances/%s/frames/2/raw' % s)) | |
| 3188 im = GetImage(_REMOTE, '/instances/%s/frames/0/raw' % s) | |
| 3189 self.assertEqual("RGB", im.mode) | |
| 3190 self.assertEqual(512, im.size[0]) | |
| 3191 self.assertEqual(512, im.size[1]) | |
| 323 | 3192 im = GetImage(_REMOTE, '/instances/%s/frames/0/preview' % s) # TODO - Doesn't work with GDCM 3.0.7 alone |
| 79 | 3193 self.assertEqual("RGB", im.mode) |
| 3194 self.assertEqual(512, im.size[0]) | |
| 3195 self.assertEqual(512, im.size[1]) | |
| 81 | 3196 |
| 3197 | |
| 3198 | |
| 3199 def test_rest_movescu(self): | |
| 3200 self.assertEqual(0, len(DoGet(_REMOTE, '/patients'))) | |
| 3201 | |
| 3202 # Upload 4 instances | |
| 3203 UploadInstance(_REMOTE, 'Brainix/Flair/IM-0001-0001.dcm') | |
| 3204 UploadInstance(_REMOTE, 'Brainix/Flair/IM-0001-0002.dcm') | |
| 3205 UploadInstance(_REMOTE, 'Brainix/Epi/IM-0001-0001.dcm') | |
| 3206 UploadInstance(_REMOTE, 'Knee/T2/IM-0001-0001.dcm') | |
| 3207 | |
| 3208 self.assertEqual(2, len(DoGet(_REMOTE, '/patients'))) | |
| 3209 for p in DoGet(_REMOTE, '/patients'): | |
| 3210 DoPost(_REMOTE, '/modalities/orthanctest/store', p) | |
| 3211 DoDelete(_REMOTE, '/patients/%s' % p) | |
| 3212 | |
| 3213 self.assertEqual(0, len(DoGet(_REMOTE, '/patients'))) | |
| 3214 | |
| 3215 # Upload instance Brainix/Flair/IM-0001-0001.dcm | |
| 3216 DoPost(_REMOTE, '/modalities/orthanctest/move', { 'Level' : 'Instance', | |
| 3217 'Resources' : [ | |
| 3218 { | |
| 3219 'StudyInstanceUID' : '2.16.840.1.113669.632.20.1211.10000357775', | |
| 3220 'SeriesInstanceUID' : '1.3.46.670589.11.0.0.11.4.2.0.8743.5.5396.2006120114285654497', | |
| 3221 'SOPInstanceUID' : '1.3.46.670589.11.0.0.11.4.2.0.8743.5.5396.2006120114314079549', | |
| 3222 } | |
| 3223 ]}) | |
| 3224 | |
| 3225 # Upload series Brainix/Flair/* | |
| 3226 self.assertEqual(1, len(DoGet(_REMOTE, '/patients'))) | |
| 3227 self.assertEqual(1, len(DoGet(_REMOTE, '/studies'))) | |
| 3228 self.assertEqual(1, len(DoGet(_REMOTE, '/series'))) | |
| 3229 self.assertEqual(1, len(DoGet(_REMOTE, '/instances'))) | |
| 3230 | |
| 3231 DoPost(_REMOTE, '/modalities/orthanctest/move', { 'Level' : 'Series', | |
| 3232 'Resources' : [ | |
| 3233 { | |
| 3234 'StudyInstanceUID' : '2.16.840.1.113669.632.20.1211.10000357775', | |
| 3235 'SeriesInstanceUID' : '1.3.46.670589.11.0.0.11.4.2.0.8743.5.5396.2006120114285654497', | |
| 3236 } | |
| 3237 ]}) | |
| 3238 self.assertEqual(1, len(DoGet(_REMOTE, '/patients'))) | |
| 3239 self.assertEqual(1, len(DoGet(_REMOTE, '/studies'))) | |
| 3240 self.assertEqual(1, len(DoGet(_REMOTE, '/series'))) | |
| 3241 self.assertEqual(2, len(DoGet(_REMOTE, '/instances'))) | |
| 3242 | |
| 3243 # Upload series Brainix/Epi/* | |
| 3244 DoPost(_REMOTE, '/modalities/orthanctest/move', { 'Level' : 'Series', | |
| 3245 'Resources' : [ | |
| 3246 { | |
| 3247 'StudyInstanceUID' : '2.16.840.1.113669.632.20.1211.10000357775', | |
| 3248 'SeriesInstanceUID' : '1.3.46.670589.11.0.0.11.4.2.0.8743.5.5396.2006120114314125550', | |
| 3249 } | |
| 3250 ]}) | |
| 3251 self.assertEqual(1, len(DoGet(_REMOTE, '/patients'))) | |
| 3252 self.assertEqual(1, len(DoGet(_REMOTE, '/studies'))) | |
| 3253 self.assertEqual(2, len(DoGet(_REMOTE, '/series'))) | |
| 3254 self.assertEqual(3, len(DoGet(_REMOTE, '/instances'))) | |
| 3255 | |
| 3256 # Upload study Knee/* | |
| 3257 DoPost(_REMOTE, '/modalities/orthanctest/move', { 'Level' : 'Study', | |
| 3258 'Resources' : [ | |
| 3259 { | |
| 3260 'StudyInstanceUID' : '2.16.840.1.113669.632.20.121711.10000160881', | |
| 3261 } | |
| 3262 ]}) | |
| 3263 self.assertEqual(2, len(DoGet(_REMOTE, '/patients'))) | |
| 3264 self.assertEqual(2, len(DoGet(_REMOTE, '/studies'))) | |
| 3265 self.assertEqual(3, len(DoGet(_REMOTE, '/series'))) | |
| 3266 self.assertEqual(4, len(DoGet(_REMOTE, '/instances'))) | |
| 3267 | |
| 3268 # Reset | |
| 3269 for p in DoGet(_REMOTE, '/patients'): | |
| 3270 DoDelete(_REMOTE, '/patients/%s' % p) | |
| 3271 | |
| 3272 self.assertEqual(0, len(DoGet(_REMOTE, '/patients'))) | |
| 3273 | |
| 3274 | |
| 3275 # Upload all at once | |
| 3276 DoPost(_REMOTE, '/modalities/orthanctest/move', { 'Level' : 'Study', | |
| 3277 'Resources' : [ | |
| 3278 { | |
| 3279 'StudyInstanceUID' : '2.16.840.1.113669.632.20.121711.10000160881', | |
| 3280 }, | |
| 3281 { | |
| 3282 'StudyInstanceUID' : '2.16.840.1.113669.632.20.1211.10000357775', | |
| 3283 } | |
| 3284 ]}) | |
| 3285 self.assertEqual(2, len(DoGet(_REMOTE, '/patients'))) | |
| 3286 self.assertEqual(2, len(DoGet(_REMOTE, '/studies'))) | |
| 3287 self.assertEqual(3, len(DoGet(_REMOTE, '/series'))) | |
| 3288 self.assertEqual(4, len(DoGet(_REMOTE, '/instances'))) | |
| 3289 | |
|
86
0401ef51f5c1
test_reconstruct_json
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
83
diff
changeset
|
3290 |
|
0401ef51f5c1
test_reconstruct_json
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
83
diff
changeset
|
3291 |
|
0401ef51f5c1
test_reconstruct_json
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
83
diff
changeset
|
3292 def test_reconstruct_json(self): |
|
0401ef51f5c1
test_reconstruct_json
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
83
diff
changeset
|
3293 self.assertEqual(0, len(DoGet(_REMOTE, '/patients'))) |
|
0401ef51f5c1
test_reconstruct_json
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
83
diff
changeset
|
3294 |
|
0401ef51f5c1
test_reconstruct_json
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
83
diff
changeset
|
3295 instance = UploadInstance(_REMOTE, 'DummyCT.dcm')['ID'] |
|
0401ef51f5c1
test_reconstruct_json
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
83
diff
changeset
|
3296 first = DoGet(_REMOTE, '/instances/%s/tags' % instance) |
|
0401ef51f5c1
test_reconstruct_json
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
83
diff
changeset
|
3297 |
|
0401ef51f5c1
test_reconstruct_json
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
83
diff
changeset
|
3298 self.assertEqual('TWINOW', first['0008,1010']['Value']) |
|
0401ef51f5c1
test_reconstruct_json
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
83
diff
changeset
|
3299 self.assertEqual(2, len(DoGet(_REMOTE, '/instances/%s/attachments' % instance))) |
|
0401ef51f5c1
test_reconstruct_json
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
83
diff
changeset
|
3300 |
|
0401ef51f5c1
test_reconstruct_json
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
83
diff
changeset
|
3301 # Cannot delete the "DICOM" attachment |
|
0401ef51f5c1
test_reconstruct_json
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
83
diff
changeset
|
3302 self.assertRaises(Exception, lambda: DoDelete(_REMOTE, '/instances/%s/attachments/dicom' % instance)) |
|
0401ef51f5c1
test_reconstruct_json
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
83
diff
changeset
|
3303 |
|
0401ef51f5c1
test_reconstruct_json
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
83
diff
changeset
|
3304 # Can delete the "DICOM as JSON" attachment |
|
0401ef51f5c1
test_reconstruct_json
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
83
diff
changeset
|
3305 r = DoDelete(_REMOTE, '/instances/%s/attachments/dicom-as-json' % instance) |
|
0401ef51f5c1
test_reconstruct_json
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
83
diff
changeset
|
3306 self.assertTrue(type(r) is dict and len(r) == 0) |
|
0401ef51f5c1
test_reconstruct_json
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
83
diff
changeset
|
3307 |
|
0401ef51f5c1
test_reconstruct_json
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
83
diff
changeset
|
3308 # Only the "DICOM" attachment subsists |
|
0401ef51f5c1
test_reconstruct_json
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
83
diff
changeset
|
3309 self.assertEqual(1, len(DoGet(_REMOTE, '/instances/%s/attachments' % instance))) |
|
0401ef51f5c1
test_reconstruct_json
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
83
diff
changeset
|
3310 |
|
0401ef51f5c1
test_reconstruct_json
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
83
diff
changeset
|
3311 # Cannot manually reconstruct the "DICOM as JSON" attachment |
|
0401ef51f5c1
test_reconstruct_json
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
83
diff
changeset
|
3312 self.assertRaises(Exception, lambda: DoPut(_REMOTE, '/patients/%s/attachments/dicom-as-json' % patient, 'hello')) |
|
0401ef51f5c1
test_reconstruct_json
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
83
diff
changeset
|
3313 |
|
0401ef51f5c1
test_reconstruct_json
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
83
diff
changeset
|
3314 # Transparently reconstruct the "DICOM as JSON" attachment |
|
0401ef51f5c1
test_reconstruct_json
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
83
diff
changeset
|
3315 self.assertRaises(Exception, lambda: DoGet(_REMOTE, '/instances/%s/attachments/dicom-as-json' % instance)) |
|
0401ef51f5c1
test_reconstruct_json
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
83
diff
changeset
|
3316 second = DoGet(_REMOTE, '/instances/%s/tags' % instance) |
|
0401ef51f5c1
test_reconstruct_json
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
83
diff
changeset
|
3317 self.assertEqual(2, len(DoGet(_REMOTE, '/instances/%s/attachments' % instance))) |
|
0401ef51f5c1
test_reconstruct_json
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
83
diff
changeset
|
3318 |
|
0401ef51f5c1
test_reconstruct_json
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
83
diff
changeset
|
3319 third = DoGet(_REMOTE, '/instances/%s/attachments/dicom-as-json/data' % instance) |
|
0401ef51f5c1
test_reconstruct_json
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
83
diff
changeset
|
3320 self.assertEqual(str(first), str(second)) |
|
0401ef51f5c1
test_reconstruct_json
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
83
diff
changeset
|
3321 self.assertEqual(str(first), str(third)) |
|
87
4b24faec842b
test_reconstruct_json2 + test_private_tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
86
diff
changeset
|
3322 |
|
4b24faec842b
test_reconstruct_json2 + test_private_tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
86
diff
changeset
|
3323 |
|
4b24faec842b
test_reconstruct_json2 + test_private_tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
86
diff
changeset
|
3324 def test_reconstruct_json2(self): |
|
4b24faec842b
test_reconstruct_json2 + test_private_tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
86
diff
changeset
|
3325 self.assertEqual(0, len(DoGet(_REMOTE, '/patients'))) |
|
4b24faec842b
test_reconstruct_json2 + test_private_tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
86
diff
changeset
|
3326 |
|
4b24faec842b
test_reconstruct_json2 + test_private_tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
86
diff
changeset
|
3327 a = UploadInstance(_REMOTE, 'Brainix/Flair/IM-0001-0001.dcm')['ID'] |
|
4b24faec842b
test_reconstruct_json2 + test_private_tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
86
diff
changeset
|
3328 b = UploadInstance(_REMOTE, 'Knee/T2/IM-0001-0001.dcm')['ID'] |
|
4b24faec842b
test_reconstruct_json2 + test_private_tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
86
diff
changeset
|
3329 |
|
4b24faec842b
test_reconstruct_json2 + test_private_tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
86
diff
changeset
|
3330 self.assertEqual('BRAINIX', DoGet(_REMOTE, '/instances/%s/tags?simplify' % a)['PatientName']) |
|
4b24faec842b
test_reconstruct_json2 + test_private_tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
86
diff
changeset
|
3331 self.assertEqual('KNEE', DoGet(_REMOTE, '/instances/%s/tags?simplify' % b)['PatientName']) |
|
4b24faec842b
test_reconstruct_json2 + test_private_tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
86
diff
changeset
|
3332 |
|
4b24faec842b
test_reconstruct_json2 + test_private_tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
86
diff
changeset
|
3333 self.assertEqual(2, len(DoGet(_REMOTE, '/instances/%s/attachments' % a))) |
|
4b24faec842b
test_reconstruct_json2 + test_private_tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
86
diff
changeset
|
3334 self.assertEqual(2, len(DoGet(_REMOTE, '/instances/%s/attachments' % b))) |
|
4b24faec842b
test_reconstruct_json2 + test_private_tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
86
diff
changeset
|
3335 |
|
4b24faec842b
test_reconstruct_json2 + test_private_tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
86
diff
changeset
|
3336 DoPost(_REMOTE, '/tools/invalidate-tags', '', 'text/plain') |
|
4b24faec842b
test_reconstruct_json2 + test_private_tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
86
diff
changeset
|
3337 |
|
4b24faec842b
test_reconstruct_json2 + test_private_tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
86
diff
changeset
|
3338 self.assertEqual(1, len(DoGet(_REMOTE, '/instances/%s/attachments' % a))) |
|
4b24faec842b
test_reconstruct_json2 + test_private_tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
86
diff
changeset
|
3339 self.assertEqual(1, len(DoGet(_REMOTE, '/instances/%s/attachments' % b))) |
|
4b24faec842b
test_reconstruct_json2 + test_private_tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
86
diff
changeset
|
3340 |
|
4b24faec842b
test_reconstruct_json2 + test_private_tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
86
diff
changeset
|
3341 self.assertEqual('BRAINIX', DoGet(_REMOTE, '/instances/%s/tags?simplify' % a)['PatientName']) |
|
4b24faec842b
test_reconstruct_json2 + test_private_tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
86
diff
changeset
|
3342 self.assertEqual('KNEE', DoGet(_REMOTE, '/instances/%s/tags?simplify' % b)['PatientName']) |
|
4b24faec842b
test_reconstruct_json2 + test_private_tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
86
diff
changeset
|
3343 |
|
4b24faec842b
test_reconstruct_json2 + test_private_tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
86
diff
changeset
|
3344 self.assertEqual(2, len(DoGet(_REMOTE, '/instances/%s/attachments' % a))) |
|
4b24faec842b
test_reconstruct_json2 + test_private_tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
86
diff
changeset
|
3345 self.assertEqual(2, len(DoGet(_REMOTE, '/instances/%s/attachments' % b))) |
|
4b24faec842b
test_reconstruct_json2 + test_private_tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
86
diff
changeset
|
3346 |
|
4b24faec842b
test_reconstruct_json2 + test_private_tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
86
diff
changeset
|
3347 |
|
4b24faec842b
test_reconstruct_json2 + test_private_tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
86
diff
changeset
|
3348 def test_private_tags(self): |
|
4b24faec842b
test_reconstruct_json2 + test_private_tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
86
diff
changeset
|
3349 i = UploadInstance(_REMOTE, 'PrivateMDNTags.dcm')['ID'] |
|
4b24faec842b
test_reconstruct_json2 + test_private_tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
86
diff
changeset
|
3350 t = DoGet(_REMOTE, '/instances/%s/tags?simplify' % i) |
|
4b24faec842b
test_reconstruct_json2 + test_private_tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
86
diff
changeset
|
3351 self.assertEqual('1.2.840.113704.1.111.6320.1342451261.21', t['PET-CT Multi Modality Name']) |
|
4b24faec842b
test_reconstruct_json2 + test_private_tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
86
diff
changeset
|
3352 self.assertEqual('p37s0_na_ctac.img', t['Original Image Filename']) |
|
4b24faec842b
test_reconstruct_json2 + test_private_tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
86
diff
changeset
|
3353 |
|
92
dbcbffb889da
test_findscu_encoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
89
diff
changeset
|
3354 |
|
dbcbffb889da
test_findscu_encoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
89
diff
changeset
|
3355 def test_findscu_encoding(self): |
|
dbcbffb889da
test_findscu_encoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
89
diff
changeset
|
3356 # Check out ../Database/Encodings/Generate.sh |
|
dbcbffb889da
test_findscu_encoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
89
diff
changeset
|
3357 TEST = u'Test-éüäöòДΘĝדصķћ๛ﾈİ' |
|
dbcbffb889da
test_findscu_encoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
89
diff
changeset
|
3358 ENCODINGS = { |
|
dbcbffb889da
test_findscu_encoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
89
diff
changeset
|
3359 'Arabic' : [ 'ISO_IR 127' ], |
|
dbcbffb889da
test_findscu_encoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
89
diff
changeset
|
3360 'Ascii' : [ 'ISO_IR 6' ], # More accurately, ISO 646 |
|
dbcbffb889da
test_findscu_encoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
89
diff
changeset
|
3361 'Cyrillic' : [ 'ISO_IR 144' ], |
|
dbcbffb889da
test_findscu_encoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
89
diff
changeset
|
3362 'Greek' : [ 'ISO_IR 126' ], |
|
dbcbffb889da
test_findscu_encoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
89
diff
changeset
|
3363 'Hebrew' : [ 'ISO_IR 138' ], |
|
dbcbffb889da
test_findscu_encoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
89
diff
changeset
|
3364 'Japanese' : [ 'ISO_IR 13', 'shift-jis' ], |
|
dbcbffb889da
test_findscu_encoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
89
diff
changeset
|
3365 'Latin1' : [ 'ISO_IR 100' ], |
|
dbcbffb889da
test_findscu_encoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
89
diff
changeset
|
3366 'Latin2' : [ 'ISO_IR 101' ], |
|
dbcbffb889da
test_findscu_encoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
89
diff
changeset
|
3367 'Latin3' : [ 'ISO_IR 109' ], |
|
dbcbffb889da
test_findscu_encoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
89
diff
changeset
|
3368 'Latin4' : [ 'ISO_IR 110' ], |
|
dbcbffb889da
test_findscu_encoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
89
diff
changeset
|
3369 'Latin5' : [ 'ISO_IR 148' ], |
|
dbcbffb889da
test_findscu_encoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
89
diff
changeset
|
3370 'Thai' : [ 'ISO_IR 166', 'tis-620' ], |
|
dbcbffb889da
test_findscu_encoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
89
diff
changeset
|
3371 'Utf8' : [ 'ISO_IR 192' ], |
|
dbcbffb889da
test_findscu_encoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
89
diff
changeset
|
3372 } |
|
dbcbffb889da
test_findscu_encoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
89
diff
changeset
|
3373 |
|
dbcbffb889da
test_findscu_encoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
89
diff
changeset
|
3374 for name in ENCODINGS.iterkeys(): |
|
dbcbffb889da
test_findscu_encoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
89
diff
changeset
|
3375 if len(ENCODINGS[name]) == 1: |
|
dbcbffb889da
test_findscu_encoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
89
diff
changeset
|
3376 ENCODINGS[name].append(name.lower()) |
|
dbcbffb889da
test_findscu_encoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
89
diff
changeset
|
3377 |
|
dbcbffb889da
test_findscu_encoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
89
diff
changeset
|
3378 UploadInstance(_REMOTE, 'Encodings/Lena-utf8.dcm') |
|
dbcbffb889da
test_findscu_encoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
89
diff
changeset
|
3379 |
|
dbcbffb889da
test_findscu_encoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
89
diff
changeset
|
3380 for name in ENCODINGS.iterkeys(): |
|
dbcbffb889da
test_findscu_encoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
89
diff
changeset
|
3381 self.assertEqual(name, DoPut(_REMOTE, '/tools/default-encoding', name)) |
|
dbcbffb889da
test_findscu_encoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
89
diff
changeset
|
3382 self.assertEqual(name, DoGet(_REMOTE, '/tools/default-encoding')) |
|
dbcbffb889da
test_findscu_encoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
89
diff
changeset
|
3383 |
|
dbcbffb889da
test_findscu_encoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
89
diff
changeset
|
3384 i = CallFindScu([ '-k', '0008,0052=STUDY', |
|
dbcbffb889da
test_findscu_encoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
89
diff
changeset
|
3385 '-k', 'SpecificCharacterSet', |
|
dbcbffb889da
test_findscu_encoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
89
diff
changeset
|
3386 '-k', 'PatientName' ]) |
|
dbcbffb889da
test_findscu_encoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
89
diff
changeset
|
3387 |
|
dbcbffb889da
test_findscu_encoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
89
diff
changeset
|
3388 characterSet = re.findall('\(0008,0005\).*?\[(.*?)\]', i) |
|
dbcbffb889da
test_findscu_encoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
89
diff
changeset
|
3389 self.assertEqual(1, len(characterSet)) |
|
dbcbffb889da
test_findscu_encoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
89
diff
changeset
|
3390 self.assertEqual(ENCODINGS[name][0], characterSet[0].strip()) |
|
dbcbffb889da
test_findscu_encoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
89
diff
changeset
|
3391 |
|
dbcbffb889da
test_findscu_encoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
89
diff
changeset
|
3392 patientName = re.findall('\(0010,0010\).*?\[(.*?)\]', i) |
|
dbcbffb889da
test_findscu_encoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
89
diff
changeset
|
3393 self.assertEqual(1, len(patientName)) |
|
dbcbffb889da
test_findscu_encoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
89
diff
changeset
|
3394 |
|
dbcbffb889da
test_findscu_encoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
89
diff
changeset
|
3395 expected = TEST.encode(ENCODINGS[name][1], 'ignore') |
|
dbcbffb889da
test_findscu_encoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
89
diff
changeset
|
3396 self.assertEqual(expected, patientName[0].strip()) |
|
dbcbffb889da
test_findscu_encoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
89
diff
changeset
|
3397 |
|
dbcbffb889da
test_findscu_encoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
89
diff
changeset
|
3398 |
|
dbcbffb889da
test_findscu_encoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
89
diff
changeset
|
3399 #for master in ENCODINGS: |
|
dbcbffb889da
test_findscu_encoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
89
diff
changeset
|
3400 for master in [ 'Latin1', 'Utf8', 'Cyrillic' ]: # Shortcut to speedup tests |
|
dbcbffb889da
test_findscu_encoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
89
diff
changeset
|
3401 self.assertEqual(master, DoPut(_REMOTE, '/tools/default-encoding', master)) |
|
dbcbffb889da
test_findscu_encoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
89
diff
changeset
|
3402 self.assertEqual(master, DoGet(_REMOTE, '/tools/default-encoding')) |
|
dbcbffb889da
test_findscu_encoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
89
diff
changeset
|
3403 |
|
dbcbffb889da
test_findscu_encoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
89
diff
changeset
|
3404 for name in ENCODINGS: |
|
dbcbffb889da
test_findscu_encoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
89
diff
changeset
|
3405 DropOrthanc(_REMOTE) |
|
dbcbffb889da
test_findscu_encoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
89
diff
changeset
|
3406 UploadInstance(_REMOTE, 'Encodings/Lena-%s.dcm' % ENCODINGS[name][1]) |
|
dbcbffb889da
test_findscu_encoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
89
diff
changeset
|
3407 |
|
dbcbffb889da
test_findscu_encoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
89
diff
changeset
|
3408 i = CallFindScu([ '-k', '0008,0052=STUDY', |
|
dbcbffb889da
test_findscu_encoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
89
diff
changeset
|
3409 '-k', 'PatientID', |
|
dbcbffb889da
test_findscu_encoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
89
diff
changeset
|
3410 '-k', 'SpecificCharacterSet', |
|
dbcbffb889da
test_findscu_encoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
89
diff
changeset
|
3411 '-k', 'PatientName' ]) |
|
dbcbffb889da
test_findscu_encoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
89
diff
changeset
|
3412 i = i.decode(ENCODINGS[master][1]) |
|
dbcbffb889da
test_findscu_encoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
89
diff
changeset
|
3413 |
|
dbcbffb889da
test_findscu_encoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
89
diff
changeset
|
3414 characterSet = re.findall('\(0008,0005\).*?\[(.*?)\]', i) |
|
dbcbffb889da
test_findscu_encoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
89
diff
changeset
|
3415 self.assertEqual(1, len(characterSet)) |
|
dbcbffb889da
test_findscu_encoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
89
diff
changeset
|
3416 self.assertEqual(ENCODINGS[master][0], characterSet[0].strip()) |
|
dbcbffb889da
test_findscu_encoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
89
diff
changeset
|
3417 |
|
dbcbffb889da
test_findscu_encoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
89
diff
changeset
|
3418 patientId = re.findall('\(0010,0020\).*?\[(.*?)\]', i) |
|
dbcbffb889da
test_findscu_encoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
89
diff
changeset
|
3419 self.assertEqual(1, len(patientId)) |
|
dbcbffb889da
test_findscu_encoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
89
diff
changeset
|
3420 self.assertEqual(ENCODINGS[name][1], patientId[0].strip()) |
|
dbcbffb889da
test_findscu_encoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
89
diff
changeset
|
3421 |
|
dbcbffb889da
test_findscu_encoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
89
diff
changeset
|
3422 patientName = re.findall('\(0010,0010\).*?\[(.*?)\]', i) |
|
dbcbffb889da
test_findscu_encoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
89
diff
changeset
|
3423 self.assertEqual(1, len(patientName)) |
|
dbcbffb889da
test_findscu_encoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
89
diff
changeset
|
3424 |
|
dbcbffb889da
test_findscu_encoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
89
diff
changeset
|
3425 tmp = ENCODINGS[name][1] |
|
dbcbffb889da
test_findscu_encoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
89
diff
changeset
|
3426 expected = TEST.encode(tmp, 'ignore').decode(tmp) |
|
dbcbffb889da
test_findscu_encoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
89
diff
changeset
|
3427 tmp = ENCODINGS[master][1] |
|
dbcbffb889da
test_findscu_encoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
89
diff
changeset
|
3428 expected = expected.encode(tmp, 'ignore').decode(tmp) |
|
dbcbffb889da
test_findscu_encoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
89
diff
changeset
|
3429 |
|
dbcbffb889da
test_findscu_encoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
89
diff
changeset
|
3430 self.assertEqual(expected, patientName[0].strip()) |
|
dbcbffb889da
test_findscu_encoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
89
diff
changeset
|
3431 |
|
dbcbffb889da
test_findscu_encoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
89
diff
changeset
|
3432 |
|
dbcbffb889da
test_findscu_encoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
89
diff
changeset
|
3433 a = DoPost(_REMOTE, '/tools/find', { 'Expand' : True, |
|
dbcbffb889da
test_findscu_encoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
89
diff
changeset
|
3434 'Level' : 'Study', |
|
dbcbffb889da
test_findscu_encoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
89
diff
changeset
|
3435 'Query' : { }}) |
|
dbcbffb889da
test_findscu_encoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
89
diff
changeset
|
3436 self.assertEqual(1, len(a)) |
|
dbcbffb889da
test_findscu_encoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
89
diff
changeset
|
3437 |
|
dbcbffb889da
test_findscu_encoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
89
diff
changeset
|
3438 tmp = ENCODINGS[name][1] |
|
dbcbffb889da
test_findscu_encoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
89
diff
changeset
|
3439 self.assertEqual(TEST.encode(tmp, 'ignore').decode(tmp), a[0]["PatientMainDicomTags"]["PatientName"]) |
|
96
272d1229cb49
test reconstruction of tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
95
diff
changeset
|
3440 |
| 314 | 3441 # Back to UTF-8 |
| 3442 self.assertEqual('Utf8', DoPut(_REMOTE, '/tools/default-encoding', 'Utf8')) | |
| 3443 | |
|
96
272d1229cb49
test reconstruction of tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
95
diff
changeset
|
3444 |
|
272d1229cb49
test reconstruction of tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
95
diff
changeset
|
3445 def test_reconstruct(self): |
|
272d1229cb49
test reconstruction of tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
95
diff
changeset
|
3446 def CompareMainDicomTag(expected, instance, level, tag): |
|
272d1229cb49
test reconstruction of tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
95
diff
changeset
|
3447 self.assertEqual(expected, DoGet(_REMOTE, '/instances/%s/%s' % (instance, level))['MainDicomTags'][tag].strip()) |
|
272d1229cb49
test reconstruction of tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
95
diff
changeset
|
3448 |
|
272d1229cb49
test reconstruction of tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
95
diff
changeset
|
3449 a = UploadInstance(_REMOTE, 'DummyCT.dcm')['ID'] |
|
272d1229cb49
test reconstruction of tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
95
diff
changeset
|
3450 |
|
272d1229cb49
test reconstruction of tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
95
diff
changeset
|
3451 studies = DoGet(_REMOTE, '/studies/') |
|
272d1229cb49
test reconstruction of tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
95
diff
changeset
|
3452 self.assertEqual(1, len(DoGet(_REMOTE, '/patients/'))) |
|
272d1229cb49
test reconstruction of tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
95
diff
changeset
|
3453 self.assertEqual(1, len(studies)) |
|
272d1229cb49
test reconstruction of tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
95
diff
changeset
|
3454 self.assertEqual(1, len(DoGet(_REMOTE, '/series/'))) |
|
272d1229cb49
test reconstruction of tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
95
diff
changeset
|
3455 self.assertEqual(1, len(DoGet(_REMOTE, '/instances/'))) |
|
272d1229cb49
test reconstruction of tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
95
diff
changeset
|
3456 |
|
272d1229cb49
test reconstruction of tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
95
diff
changeset
|
3457 modified = DoPost(_REMOTE, '/studies/%s/modify' % studies[0], { |
|
272d1229cb49
test reconstruction of tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
95
diff
changeset
|
3458 "Replace" : { |
|
272d1229cb49
test reconstruction of tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
95
diff
changeset
|
3459 "StudyDescription" : "hello", |
|
272d1229cb49
test reconstruction of tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
95
diff
changeset
|
3460 "SeriesDescription" : "world", |
|
272d1229cb49
test reconstruction of tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
95
diff
changeset
|
3461 "SOPClassUID" : "test", |
|
272d1229cb49
test reconstruction of tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
95
diff
changeset
|
3462 "SOPInstanceUID" : "myid", |
|
272d1229cb49
test reconstruction of tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
95
diff
changeset
|
3463 }, |
| 119 | 3464 "Keep" : [ "StudyInstanceUID", "SeriesInstanceUID" ], |
| 3465 "Force" : True | |
|
96
272d1229cb49
test reconstruction of tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
95
diff
changeset
|
3466 }) |
|
272d1229cb49
test reconstruction of tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
95
diff
changeset
|
3467 |
|
272d1229cb49
test reconstruction of tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
95
diff
changeset
|
3468 instances = DoGet(_REMOTE, '/instances/') |
|
272d1229cb49
test reconstruction of tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
95
diff
changeset
|
3469 self.assertEqual(1, len(DoGet(_REMOTE, '/patients/'))) |
|
272d1229cb49
test reconstruction of tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
95
diff
changeset
|
3470 self.assertEqual(1, len(DoGet(_REMOTE, '/studies/'))) |
|
272d1229cb49
test reconstruction of tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
95
diff
changeset
|
3471 self.assertEqual(1, len(DoGet(_REMOTE, '/series/'))) |
|
272d1229cb49
test reconstruction of tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
95
diff
changeset
|
3472 self.assertEqual(2, len(instances)) |
|
272d1229cb49
test reconstruction of tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
95
diff
changeset
|
3473 |
|
272d1229cb49
test reconstruction of tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
95
diff
changeset
|
3474 b = instances[0] if instances[1] == a else instances[1] |
|
272d1229cb49
test reconstruction of tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
95
diff
changeset
|
3475 |
|
272d1229cb49
test reconstruction of tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
95
diff
changeset
|
3476 CompareMainDicomTag('Knee (R)', a, 'study', 'StudyDescription') |
|
272d1229cb49
test reconstruction of tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
95
diff
changeset
|
3477 CompareMainDicomTag('AX. FSE PD', a, 'series', 'SeriesDescription') |
|
272d1229cb49
test reconstruction of tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
95
diff
changeset
|
3478 CompareMainDicomTag('1.2.840.113619.2.176.2025.1499492.7040.1171286242.109', a, '', 'SOPInstanceUID') |
|
272d1229cb49
test reconstruction of tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
95
diff
changeset
|
3479 CompareMainDicomTag('myid', b, '', 'SOPInstanceUID') |
|
272d1229cb49
test reconstruction of tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
95
diff
changeset
|
3480 self.assertEqual('1.2.840.10008.5.1.4.1.1.4', DoGet(_REMOTE, '/instances/%s/metadata/SopClassUid' % a).strip()) |
|
272d1229cb49
test reconstruction of tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
95
diff
changeset
|
3481 self.assertEqual('test', DoGet(_REMOTE, '/instances/%s/metadata/SopClassUid' % b).strip()) |
|
272d1229cb49
test reconstruction of tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
95
diff
changeset
|
3482 |
|
272d1229cb49
test reconstruction of tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
95
diff
changeset
|
3483 DoPost(_REMOTE, '/instances/%s/reconstruct' % b, {}) |
|
272d1229cb49
test reconstruction of tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
95
diff
changeset
|
3484 |
|
272d1229cb49
test reconstruction of tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
95
diff
changeset
|
3485 CompareMainDicomTag('hello', a, 'study', 'StudyDescription') |
|
272d1229cb49
test reconstruction of tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
95
diff
changeset
|
3486 CompareMainDicomTag('world', a, 'series', 'SeriesDescription') |
|
272d1229cb49
test reconstruction of tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
95
diff
changeset
|
3487 CompareMainDicomTag('1.2.840.113619.2.176.2025.1499492.7040.1171286242.109', a, '', 'SOPInstanceUID') |
| 102 | 3488 |
| 104 | 3489 def test_httpClient_lua(self): |
| 3490 with open(GetDatabasePath('Lua/HttpClient.lua'), 'r') as f: | |
| 102 | 3491 result = DoPost(_REMOTE, '/tools/execute-script', f.read(), 'application/lua') |
| 3492 | |
| 3493 self.assertIn('OK', result) | |
|
107
fddb35f7289d
test_bitbucket_issue_44
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
104
diff
changeset
|
3494 |
|
fddb35f7289d
test_bitbucket_issue_44
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
104
diff
changeset
|
3495 |
|
fddb35f7289d
test_bitbucket_issue_44
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
104
diff
changeset
|
3496 def test_bitbucket_issue_44(self): |
| 319 | 3497 # https://bugs.orthanc-server.com/show_bug.cgi?id=44 |
|
107
fddb35f7289d
test_bitbucket_issue_44
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
104
diff
changeset
|
3498 UploadInstance(_REMOTE, 'Issue44/Monochrome1.dcm') |
|
fddb35f7289d
test_bitbucket_issue_44
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
104
diff
changeset
|
3499 UploadInstance(_REMOTE, 'Issue44/Monochrome2.dcm') |
|
fddb35f7289d
test_bitbucket_issue_44
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
104
diff
changeset
|
3500 |
|
fddb35f7289d
test_bitbucket_issue_44
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
104
diff
changeset
|
3501 # dcmcjpeg +ua +eb Monochrome1.dcm Monochrome1-Jpeg.dcm |
|
fddb35f7289d
test_bitbucket_issue_44
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
104
diff
changeset
|
3502 UploadInstance(_REMOTE, 'Issue44/Monochrome1-Jpeg.dcm') |
|
fddb35f7289d
test_bitbucket_issue_44
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
104
diff
changeset
|
3503 |
|
fddb35f7289d
test_bitbucket_issue_44
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
104
diff
changeset
|
3504 # dcmcjpeg +ua Monochrome1.dcm Monochrome1-JpegLS.dcm |
|
fddb35f7289d
test_bitbucket_issue_44
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
104
diff
changeset
|
3505 UploadInstance(_REMOTE, 'Issue44/Monochrome1-JpegLS.dcm') |
|
fddb35f7289d
test_bitbucket_issue_44
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
104
diff
changeset
|
3506 |
|
fddb35f7289d
test_bitbucket_issue_44
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
104
diff
changeset
|
3507 monochrome1 = 'bcdd600a-a6a9c522-5f0a6e84-8657c9f3-b76e59b7' |
|
fddb35f7289d
test_bitbucket_issue_44
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
104
diff
changeset
|
3508 monochrome1_jpeg = '9df82121-208a2da8-0038674a-3d7a773b-b7008cd2' |
|
fddb35f7289d
test_bitbucket_issue_44
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
104
diff
changeset
|
3509 monochrome1_jpegls = '0486d1a2-9165573f-b1976b20-e927b016-6b8d67ab' |
|
fddb35f7289d
test_bitbucket_issue_44
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
104
diff
changeset
|
3510 monochrome2 = 'f00947b7-f61f7164-c93414d1-c6fbda6a-9e92ed20' |
|
fddb35f7289d
test_bitbucket_issue_44
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
104
diff
changeset
|
3511 |
|
fddb35f7289d
test_bitbucket_issue_44
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
104
diff
changeset
|
3512 for i in [ monochrome1, monochrome1_jpeg, monochrome1_jpegls ]: |
|
fddb35f7289d
test_bitbucket_issue_44
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
104
diff
changeset
|
3513 im = GetImage(_REMOTE, '/instances/%s/preview' % i) |
|
fddb35f7289d
test_bitbucket_issue_44
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
104
diff
changeset
|
3514 self.assertEqual("L", im.mode) |
|
fddb35f7289d
test_bitbucket_issue_44
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
104
diff
changeset
|
3515 self.assertEqual(2010, im.size[0]) |
|
fddb35f7289d
test_bitbucket_issue_44
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
104
diff
changeset
|
3516 self.assertEqual(2446, im.size[1]) |
|
fddb35f7289d
test_bitbucket_issue_44
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
104
diff
changeset
|
3517 |
|
fddb35f7289d
test_bitbucket_issue_44
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
104
diff
changeset
|
3518 # This is the chest image, with MONOCHROME1. Raw background is |
|
fddb35f7289d
test_bitbucket_issue_44
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
104
diff
changeset
|
3519 # white (255), should be rendered as black (0) => invert |
|
fddb35f7289d
test_bitbucket_issue_44
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
104
diff
changeset
|
3520 if i == monochrome1_jpeg: |
|
fddb35f7289d
test_bitbucket_issue_44
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
104
diff
changeset
|
3521 # Add some tolerance because of JPEG destructive compression |
|
fddb35f7289d
test_bitbucket_issue_44
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
104
diff
changeset
|
3522 self.assertGreater(10, im.getpixel((0,0))) |
|
fddb35f7289d
test_bitbucket_issue_44
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
104
diff
changeset
|
3523 else: |
|
fddb35f7289d
test_bitbucket_issue_44
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
104
diff
changeset
|
3524 self.assertEqual(0, im.getpixel((0,0))) |
|
fddb35f7289d
test_bitbucket_issue_44
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
104
diff
changeset
|
3525 |
|
fddb35f7289d
test_bitbucket_issue_44
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
104
diff
changeset
|
3526 im = GetImage(_REMOTE, '/instances/%s/preview' % monochrome2) |
|
fddb35f7289d
test_bitbucket_issue_44
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
104
diff
changeset
|
3527 self.assertEqual("L", im.mode) |
|
fddb35f7289d
test_bitbucket_issue_44
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
104
diff
changeset
|
3528 self.assertEqual(1572, im.size[0]) |
|
fddb35f7289d
test_bitbucket_issue_44
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
104
diff
changeset
|
3529 self.assertEqual(2010, im.size[1]) |
|
fddb35f7289d
test_bitbucket_issue_44
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
104
diff
changeset
|
3530 |
|
fddb35f7289d
test_bitbucket_issue_44
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
104
diff
changeset
|
3531 # This is the key image, with MONOCHROME2. Raw background is |
|
fddb35f7289d
test_bitbucket_issue_44
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
104
diff
changeset
|
3532 # white (255), should be rendered as white (255) |
|
fddb35f7289d
test_bitbucket_issue_44
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
104
diff
changeset
|
3533 self.assertEqual(255, im.getpixel((0,0))) |
|
111
7005cdeeb704
test_bitbucket_issue_42
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
107
diff
changeset
|
3534 |
|
7005cdeeb704
test_bitbucket_issue_42
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
107
diff
changeset
|
3535 |
|
7005cdeeb704
test_bitbucket_issue_42
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
107
diff
changeset
|
3536 def test_bitbucket_issue_42(self): |
| 319 | 3537 # https://bugs.orthanc-server.com/show_bug.cgi?id=42 |
| 123 | 3538 # This test fails on DCMTK 3.6.0, but succeeds in DCMTK 3.6.1 snapshots and DCMTK 3.6.2 |
|
111
7005cdeeb704
test_bitbucket_issue_42
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
107
diff
changeset
|
3539 UploadInstance(_REMOTE, 'Issue42.dcm')['ID'] |
|
7005cdeeb704
test_bitbucket_issue_42
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
107
diff
changeset
|
3540 modified = DoPost(_REMOTE, |
|
7005cdeeb704
test_bitbucket_issue_42
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
107
diff
changeset
|
3541 '/patients/da128605-e040d0c4-310615d2-3475da63-df2d1ef4/modify', |
| 119 | 3542 '{"Replace":{"PatientID":"Hello","PatientName":"Sample patient name"},"Force":true}', |
|
111
7005cdeeb704
test_bitbucket_issue_42
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
107
diff
changeset
|
3543 'application/json') |
|
7005cdeeb704
test_bitbucket_issue_42
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
107
diff
changeset
|
3544 self.assertTrue('PatientID' in modified) |
|
113
3e5934363e76
test_rest_find_limitµ
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
112
diff
changeset
|
3545 |
|
3e5934363e76
test_rest_find_limitµ
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
112
diff
changeset
|
3546 |
|
3e5934363e76
test_rest_find_limitµ
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
112
diff
changeset
|
3547 def test_rest_find_limit(self): |
|
3e5934363e76
test_rest_find_limitµ
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
112
diff
changeset
|
3548 # Check the "Since" and "Limit" parameters in URI "/tools/find" |
| 319 | 3549 # Related to issue 53: https://bugs.orthanc-server.com/show_bug.cgi?id=53 |
|
111
7005cdeeb704
test_bitbucket_issue_42
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
107
diff
changeset
|
3550 |
|
113
3e5934363e76
test_rest_find_limitµ
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
112
diff
changeset
|
3551 # Upload 6 instances |
|
3e5934363e76
test_rest_find_limitµ
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
112
diff
changeset
|
3552 brainix = [] |
|
3e5934363e76
test_rest_find_limitµ
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
112
diff
changeset
|
3553 knee = [] |
|
3e5934363e76
test_rest_find_limitµ
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
112
diff
changeset
|
3554 for i in range(2): |
|
3e5934363e76
test_rest_find_limitµ
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
112
diff
changeset
|
3555 brainix.append(UploadInstance(_REMOTE, 'Brainix/Flair/IM-0001-000%d.dcm' % (i + 1)) ['ID']) |
|
3e5934363e76
test_rest_find_limitµ
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
112
diff
changeset
|
3556 brainix.append(UploadInstance(_REMOTE, 'Brainix/Epi/IM-0001-000%d.dcm' % (i + 1)) ['ID']) |
|
3e5934363e76
test_rest_find_limitµ
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
112
diff
changeset
|
3557 knee.append(UploadInstance(_REMOTE, 'Knee/T1/IM-0001-000%d.dcm' % (i + 1)) ['ID']) |
|
3e5934363e76
test_rest_find_limitµ
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
112
diff
changeset
|
3558 |
|
3e5934363e76
test_rest_find_limitµ
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
112
diff
changeset
|
3559 # Check using BRAINIX |
|
3e5934363e76
test_rest_find_limitµ
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
112
diff
changeset
|
3560 a = DoPost(_REMOTE, '/tools/find', { 'Level' : 'Instance', |
|
3e5934363e76
test_rest_find_limitµ
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
112
diff
changeset
|
3561 'Query' : { 'PatientName' : 'B*' }, |
|
3e5934363e76
test_rest_find_limitµ
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
112
diff
changeset
|
3562 'Limit' : 10 }) |
|
3e5934363e76
test_rest_find_limitµ
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
112
diff
changeset
|
3563 self.assertEqual(4, len(a)) |
|
3e5934363e76
test_rest_find_limitµ
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
112
diff
changeset
|
3564 |
|
3e5934363e76
test_rest_find_limitµ
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
112
diff
changeset
|
3565 a = DoPost(_REMOTE, '/tools/find', { 'Level' : 'Instance', |
|
3e5934363e76
test_rest_find_limitµ
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
112
diff
changeset
|
3566 'Query' : { 'PatientName' : 'B*' }, |
|
3e5934363e76
test_rest_find_limitµ
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
112
diff
changeset
|
3567 'Limit' : 4 }) |
|
3e5934363e76
test_rest_find_limitµ
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
112
diff
changeset
|
3568 self.assertEqual(4, len(a)) |
|
3e5934363e76
test_rest_find_limitµ
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
112
diff
changeset
|
3569 |
|
3e5934363e76
test_rest_find_limitµ
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
112
diff
changeset
|
3570 a = DoPost(_REMOTE, '/tools/find', { 'Level' : 'Instance', |
|
3e5934363e76
test_rest_find_limitµ
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
112
diff
changeset
|
3571 'Query' : { 'PatientName' : 'B*' }, |
|
3e5934363e76
test_rest_find_limitµ
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
112
diff
changeset
|
3572 'Since' : 2, |
|
3e5934363e76
test_rest_find_limitµ
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
112
diff
changeset
|
3573 'Limit' : 4 }) |
|
3e5934363e76
test_rest_find_limitµ
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
112
diff
changeset
|
3574 self.assertEqual(2, len(a)) |
|
3e5934363e76
test_rest_find_limitµ
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
112
diff
changeset
|
3575 |
|
3e5934363e76
test_rest_find_limitµ
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
112
diff
changeset
|
3576 a = DoPost(_REMOTE, '/tools/find', { 'Level' : 'Instance', |
|
3e5934363e76
test_rest_find_limitµ
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
112
diff
changeset
|
3577 'Query' : { 'PatientName' : 'B*' }, |
|
3e5934363e76
test_rest_find_limitµ
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
112
diff
changeset
|
3578 'Limit' : 3 }) |
|
3e5934363e76
test_rest_find_limitµ
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
112
diff
changeset
|
3579 self.assertEqual(3, len(a)) |
|
3e5934363e76
test_rest_find_limitµ
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
112
diff
changeset
|
3580 |
|
3e5934363e76
test_rest_find_limitµ
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
112
diff
changeset
|
3581 b = [] |
|
3e5934363e76
test_rest_find_limitµ
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
112
diff
changeset
|
3582 for i in range(4): |
|
3e5934363e76
test_rest_find_limitµ
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
112
diff
changeset
|
3583 a = DoPost(_REMOTE, '/tools/find', { 'Level' : 'Instance', |
|
3e5934363e76
test_rest_find_limitµ
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
112
diff
changeset
|
3584 'Query' : { 'PatientName' : 'B*' }, |
|
3e5934363e76
test_rest_find_limitµ
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
112
diff
changeset
|
3585 'Limit' : 1, |
|
3e5934363e76
test_rest_find_limitµ
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
112
diff
changeset
|
3586 'Since' : i }) |
|
3e5934363e76
test_rest_find_limitµ
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
112
diff
changeset
|
3587 self.assertEqual(1, len(a)) |
|
3e5934363e76
test_rest_find_limitµ
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
112
diff
changeset
|
3588 b.append(a[0]) |
|
3e5934363e76
test_rest_find_limitµ
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
112
diff
changeset
|
3589 |
|
3e5934363e76
test_rest_find_limitµ
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
112
diff
changeset
|
3590 # Check whether the two sets are equal through symmetric difference |
|
3e5934363e76
test_rest_find_limitµ
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
112
diff
changeset
|
3591 self.assertEqual(0, len(set(b) ^ set(brainix))) |
|
3e5934363e76
test_rest_find_limitµ
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
112
diff
changeset
|
3592 |
|
3e5934363e76
test_rest_find_limitµ
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
112
diff
changeset
|
3593 # Check using KNEE |
|
3e5934363e76
test_rest_find_limitµ
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
112
diff
changeset
|
3594 a = DoPost(_REMOTE, '/tools/find', { 'Level' : 'Instance', |
|
3e5934363e76
test_rest_find_limitµ
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
112
diff
changeset
|
3595 'Query' : { 'PatientName' : 'K*' }, |
|
3e5934363e76
test_rest_find_limitµ
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
112
diff
changeset
|
3596 'Limit' : 10 }) |
|
3e5934363e76
test_rest_find_limitµ
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
112
diff
changeset
|
3597 self.assertEqual(2, len(a)) |
|
3e5934363e76
test_rest_find_limitµ
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
112
diff
changeset
|
3598 |
|
3e5934363e76
test_rest_find_limitµ
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
112
diff
changeset
|
3599 a = DoPost(_REMOTE, '/tools/find', { 'Level' : 'Instance', |
|
3e5934363e76
test_rest_find_limitµ
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
112
diff
changeset
|
3600 'Query' : { 'PatientName' : 'K*' }, |
|
3e5934363e76
test_rest_find_limitµ
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
112
diff
changeset
|
3601 'Limit' : 2 }) |
|
3e5934363e76
test_rest_find_limitµ
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
112
diff
changeset
|
3602 self.assertEqual(2, len(a)) |
|
3e5934363e76
test_rest_find_limitµ
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
112
diff
changeset
|
3603 |
|
3e5934363e76
test_rest_find_limitµ
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
112
diff
changeset
|
3604 b = [] |
|
3e5934363e76
test_rest_find_limitµ
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
112
diff
changeset
|
3605 for i in range(2): |
|
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diff
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|
3606 a = DoPost(_REMOTE, '/tools/find', { 'Level' : 'Instance', |
|
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diff
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|
3607 'Query' : { 'PatientName' : 'K*' }, |
|
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diff
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|
3608 'Limit' : 1, |
|
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diff
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|
3609 'Since' : i }) |
|
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diff
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|
3610 self.assertEqual(1, len(a)) |
|
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diff
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|
3611 b.append(a[0]) |
|
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diff
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|
3612 |
|
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diff
changeset
|
3613 self.assertEqual(0, len(set(b) ^ set(knee))) |
|
115
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test_bitbucket_issue_46
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diff
changeset
|
3614 |
|
45ebfab035b7
test_bitbucket_issue_46
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diff
changeset
|
3615 |
|
45ebfab035b7
test_bitbucket_issue_46
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diff
changeset
|
3616 def test_bitbucket_issue_46(self): |
|
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diff
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|
3617 # "PHI remaining after anonymization" |
| 319 | 3618 # https://bugs.orthanc-server.com/show_bug.cgi?id=46 |
|
115
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diff
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|
3619 |
|
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diff
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|
3620 def GetAnonymizedTags(study, version): |
|
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|
3621 anonymized = DoPost(_REMOTE, '/studies/%s/anonymize' % study, |
|
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diff
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|
3622 { 'DicomVersion' : version }, |
|
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diff
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|
3623 'application/json') ['ID'] |
|
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diff
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|
3624 a = DoGet(_REMOTE, '/studies/%s/instances' % anonymized) |
|
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diff
changeset
|
3625 self.assertEqual(1, len(a)) |
|
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diff
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|
3626 |
|
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diff
changeset
|
3627 instance = a[0]['ID'] |
|
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diff
changeset
|
3628 |
|
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test_bitbucket_issue_46
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diff
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|
3629 return (instance, DoGet(_REMOTE, '/instances/%s/tags' % instance)) |
|
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test_bitbucket_issue_46
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diff
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|
3630 |
|
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test_bitbucket_issue_46
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diff
changeset
|
3631 UploadInstance(_REMOTE, 'Issue44/Monochrome1.dcm') |
|
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diff
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|
3632 origStudy = '6068a14b-d4df27af-9ec22145-538772d8-74f228ff' |
|
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test_bitbucket_issue_46
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diff
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|
3633 |
|
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diff
changeset
|
3634 # Add the 0032,1033 (Requesting Service) and the 0010,1060 |
|
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diff
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|
3635 # (Patient's Mother's Birth Name) tags |
|
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diff
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|
3636 newStudy = DoPost(_REMOTE, '/studies/%s/modify' % origStudy, |
|
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test_bitbucket_issue_46
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diff
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|
3637 '{"Replace":{"0010,1060":"OSIMIS","0032,1033":"MOTHER"}}', |
|
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test_bitbucket_issue_46
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diff
changeset
|
3638 'application/json')['ID'] |
|
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test_bitbucket_issue_46
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diff
changeset
|
3639 |
|
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test_bitbucket_issue_46
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diff
changeset
|
3640 # Use Table E.1-1 from PS 3.15-2008 |
|
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test_bitbucket_issue_46
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diff
changeset
|
3641 # https://raw.githubusercontent.com/jodogne/dicom-specification/master/2008/08_15pu.pdf |
|
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test_bitbucket_issue_46
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diff
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|
3642 (instance, tags) = GetAnonymizedTags(newStudy, "2008") |
|
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test_bitbucket_issue_46
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diff
changeset
|
3643 self.assertTrue('0032,1033' in tags) |
|
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test_bitbucket_issue_46
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diff
changeset
|
3644 self.assertTrue('0010,1060' in tags) |
|
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test_bitbucket_issue_46
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diff
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|
3645 |
|
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test_bitbucket_issue_46
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diff
changeset
|
3646 # Use Table E.1-1 from PS 3.15-2011 (only if Orthanc >= 1.2.1) |
|
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test_bitbucket_issue_46
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diff
changeset
|
3647 # https://raw.githubusercontent.com/jodogne/dicom-specification/master/2008/08_15pu.pdf |
|
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test_bitbucket_issue_46
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diff
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|
3648 (instance, tags) = GetAnonymizedTags(newStudy, "2017c") |
|
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test_bitbucket_issue_46
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113
diff
changeset
|
3649 self.assertFalse('0032,1033' in tags) |
|
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test_bitbucket_issue_46
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parents:
113
diff
changeset
|
3650 self.assertFalse('0010,1060' in tags) |
|
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test_bitbucket_issue_46
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parents:
113
diff
changeset
|
3651 |
|
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test_bitbucket_issue_46
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113
diff
changeset
|
3652 t = {} |
|
45ebfab035b7
test_bitbucket_issue_46
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113
diff
changeset
|
3653 for (key, value) in tags.iteritems(): |
|
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test_bitbucket_issue_46
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diff
changeset
|
3654 t[value['Name']] = value['Value'] |
|
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test_bitbucket_issue_46
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diff
changeset
|
3655 |
|
45ebfab035b7
test_bitbucket_issue_46
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113
diff
changeset
|
3656 self.assertEqual('', t['StudyDate']) # Type 1 tag => cleared |
|
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test_bitbucket_issue_46
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diff
changeset
|
3657 self.assertEqual('', t['StudyTime']) # Type 1 tag => cleared |
|
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test_bitbucket_issue_46
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diff
changeset
|
3658 self.assertEqual('', t['PatientSex']) # Type 1 tag => cleared |
|
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test_bitbucket_issue_46
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diff
changeset
|
3659 self.assertFalse('SeriesDate' in t) # Type 3 tag => null |
|
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test_bitbucket_issue_46
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diff
changeset
|
3660 self.assertFalse('SeriesTime' in t) # Type 3 tag => null |
|
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test_bitbucket_issue_46
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parents:
113
diff
changeset
|
3661 |
|
45ebfab035b7
test_bitbucket_issue_46
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parents:
113
diff
changeset
|
3662 with tempfile.NamedTemporaryFile(delete = True) as f: |
|
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test_bitbucket_issue_46
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113
diff
changeset
|
3663 # Run "dciodvfy" on the anonymized file to be sure it is still valid |
|
45ebfab035b7
test_bitbucket_issue_46
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diff
changeset
|
3664 f.write(DoGet(_REMOTE, '/instances/%s/file' % instance)) |
|
45ebfab035b7
test_bitbucket_issue_46
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diff
changeset
|
3665 f.flush() |
|
45ebfab035b7
test_bitbucket_issue_46
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113
diff
changeset
|
3666 subprocess.check_output([ FindExecutable('dciodvfy'), f.name ], |
|
45ebfab035b7
test_bitbucket_issue_46
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113
diff
changeset
|
3667 stderr = subprocess.STDOUT).split('\n') |
|
118
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test_bitbucket_issue_55
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parents:
117
diff
changeset
|
3668 |
|
a954c535fef6
test_bitbucket_issue_55
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parents:
117
diff
changeset
|
3669 |
|
a954c535fef6
test_bitbucket_issue_55
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parents:
117
diff
changeset
|
3670 def test_bitbucket_issue_55(self): |
|
a954c535fef6
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parents:
117
diff
changeset
|
3671 def Run(modify, query): |
|
a954c535fef6
test_bitbucket_issue_55
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parents:
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diff
changeset
|
3672 self.assertEqual(1, len(DoGet(_REMOTE, '/instances'))) |
|
a954c535fef6
test_bitbucket_issue_55
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117
diff
changeset
|
3673 |
|
a954c535fef6
test_bitbucket_issue_55
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117
diff
changeset
|
3674 operation = 'modify' if modify else 'anonymize' |
|
a954c535fef6
test_bitbucket_issue_55
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diff
changeset
|
3675 |
|
a954c535fef6
test_bitbucket_issue_55
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parents:
117
diff
changeset
|
3676 self.assertRaises(Exception, lambda: DoPost( |
|
a954c535fef6
test_bitbucket_issue_55
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diff
changeset
|
3677 _REMOTE, '/studies/%s/%s' % (study, operation), query)) |
|
a954c535fef6
test_bitbucket_issue_55
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diff
changeset
|
3678 self.assertEqual(1, len(DoGet(_REMOTE, '/instances'))) |
|
a954c535fef6
test_bitbucket_issue_55
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parents:
117
diff
changeset
|
3679 |
|
a954c535fef6
test_bitbucket_issue_55
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117
diff
changeset
|
3680 query["Force"] = True |
|
a954c535fef6
test_bitbucket_issue_55
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parents:
117
diff
changeset
|
3681 a = DoPost(_REMOTE, '/studies/%s/%s' % (study, operation), query)['Path'] |
|
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test_bitbucket_issue_55
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diff
changeset
|
3682 self.assertEqual(2, len(DoGet(_REMOTE, '/instances'))) |
|
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test_bitbucket_issue_55
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diff
changeset
|
3683 DoDelete(_REMOTE, a) |
|
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test_bitbucket_issue_55
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diff
changeset
|
3684 |
|
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test_bitbucket_issue_55
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diff
changeset
|
3685 self.assertEqual(1, len(DoGet(_REMOTE, '/instances'))) |
|
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test_bitbucket_issue_55
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117
diff
changeset
|
3686 |
|
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117
diff
changeset
|
3687 UploadInstance(_REMOTE, 'DummyCT.dcm') |
|
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diff
changeset
|
3688 study = 'b9c08539-26f93bde-c81ab0d7-bffaf2cb-a4d0bdd0' |
|
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diff
changeset
|
3689 |
|
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diff
changeset
|
3690 Run(True, { "Replace" : { "StudyInstanceUID" : "world" } }) |
|
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changeset
|
3691 Run(True, { "Replace" : { "SeriesInstanceUID" : "world" } }) |
|
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changeset
|
3692 Run(True, { "Replace" : { "SOPInstanceUID" : "world" } }) |
|
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|
3693 |
|
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diff
changeset
|
3694 Run(False, { "Keep" : [ "StudyInstanceUID" ]}) |
|
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|
3695 Run(False, { "Keep" : [ "SeriesInstanceUID" ]}) |
|
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changeset
|
3696 Run(False, { "Keep" : [ "SOPInstanceUID" ]}) |
|
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changeset
|
3697 |
|
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diff
changeset
|
3698 Run(False, { "Replace" : { "StudyInstanceUID" : "world" } }) |
|
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changeset
|
3699 Run(False, { "Replace" : { "SeriesInstanceUID" : "world" } }) |
|
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changeset
|
3700 Run(False, { "Replace" : { "SOPInstanceUID" : "world" } }) |
|
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|
3701 |
|
120
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diff
changeset
|
3702 |
|
fce08afe6b2d
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diff
changeset
|
3703 def test_bitbucket_issue_56(self): |
|
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changeset
|
3704 # Case-insensitive matching over accents. This test assumes |
|
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|
3705 # that the "CaseSensitivePN" configuration option of Orthanc |
|
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diff
changeset
|
3706 # is set to "false" (default value). |
| 319 | 3707 # https://bugs.orthanc-server.com/show_bug.cgi?id=56 |
|
120
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changeset
|
3708 |
|
fce08afe6b2d
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diff
changeset
|
3709 def Check(name, expected, expectedSensitive): |
|
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diff
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|
3710 a = CallFindScu([ '-k', '0008,0005=ISO_IR 192', # Use UTF-8 |
|
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diff
changeset
|
3711 '-k', '0008,0052=PATIENT', |
|
fce08afe6b2d
test_bitbucket_issue_56
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
119
diff
changeset
|
3712 '-k', 'PatientName=%s' % name ]) |
|
fce08afe6b2d
test_bitbucket_issue_56
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
119
diff
changeset
|
3713 patientNames = re.findall('\(0010,0010\).*?\[(.*?)\]', a) |
|
fce08afe6b2d
test_bitbucket_issue_56
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
119
diff
changeset
|
3714 self.assertEqual(expected, len(patientNames)) |
|
fce08afe6b2d
test_bitbucket_issue_56
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
119
diff
changeset
|
3715 |
|
fce08afe6b2d
test_bitbucket_issue_56
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
119
diff
changeset
|
3716 a = DoPost(_REMOTE, '/tools/find', { 'Level' : 'Patient', |
|
fce08afe6b2d
test_bitbucket_issue_56
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
119
diff
changeset
|
3717 'CaseSensitive' : False, |
|
fce08afe6b2d
test_bitbucket_issue_56
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
119
diff
changeset
|
3718 'Query' : { 'PatientName' : name }}) |
|
fce08afe6b2d
test_bitbucket_issue_56
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
119
diff
changeset
|
3719 self.assertEqual(expected, len(a)) |
|
fce08afe6b2d
test_bitbucket_issue_56
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
119
diff
changeset
|
3720 |
|
fce08afe6b2d
test_bitbucket_issue_56
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
119
diff
changeset
|
3721 a = DoPost(_REMOTE, '/tools/find', { 'Level' : 'Patient', |
|
fce08afe6b2d
test_bitbucket_issue_56
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
119
diff
changeset
|
3722 'CaseSensitive' : True, |
|
fce08afe6b2d
test_bitbucket_issue_56
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
119
diff
changeset
|
3723 'Query' : { 'PatientName' : name }}) |
|
fce08afe6b2d
test_bitbucket_issue_56
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
119
diff
changeset
|
3724 self.assertEqual(expectedSensitive, len(a)) |
|
fce08afe6b2d
test_bitbucket_issue_56
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
119
diff
changeset
|
3725 |
|
fce08afe6b2d
test_bitbucket_issue_56
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
119
diff
changeset
|
3726 UploadInstance(_REMOTE, 'Encodings/Lena-latin1.dcm') |
|
fce08afe6b2d
test_bitbucket_issue_56
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
119
diff
changeset
|
3727 |
|
fce08afe6b2d
test_bitbucket_issue_56
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
119
diff
changeset
|
3728 # WildcardConstraint |
|
fce08afe6b2d
test_bitbucket_issue_56
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
119
diff
changeset
|
3729 Check('TeSt*', 1, 0) |
|
fce08afe6b2d
test_bitbucket_issue_56
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
119
diff
changeset
|
3730 Check('TeSt-a*', 0, 0) |
|
fce08afe6b2d
test_bitbucket_issue_56
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
119
diff
changeset
|
3731 Check('TeSt-É*', 1, 0) |
|
fce08afe6b2d
test_bitbucket_issue_56
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
119
diff
changeset
|
3732 Check('TeSt-é*', 1, 0) |
|
fce08afe6b2d
test_bitbucket_issue_56
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
119
diff
changeset
|
3733 Check('Test-é*', 1, 1) |
|
fce08afe6b2d
test_bitbucket_issue_56
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
119
diff
changeset
|
3734 |
|
fce08afe6b2d
test_bitbucket_issue_56
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
119
diff
changeset
|
3735 # ListConstraint |
|
fce08afe6b2d
test_bitbucket_issue_56
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
119
diff
changeset
|
3736 Check('Test-éüäöò\\nope', 1, 1) |
|
fce08afe6b2d
test_bitbucket_issue_56
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
119
diff
changeset
|
3737 Check('Test-ÉÜÄÖÒ\\nope', 1, 0) |
|
fce08afe6b2d
test_bitbucket_issue_56
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
119
diff
changeset
|
3738 |
|
fce08afe6b2d
test_bitbucket_issue_56
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
119
diff
changeset
|
3739 # ValueConstraint |
|
fce08afe6b2d
test_bitbucket_issue_56
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
119
diff
changeset
|
3740 Check('Test-éüäöò', 1, 1) |
|
fce08afe6b2d
test_bitbucket_issue_56
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
119
diff
changeset
|
3741 Check('Test-ÉÜÄÖÒ', 1, 0) |
|
fce08afe6b2d
test_bitbucket_issue_56
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
119
diff
changeset
|
3742 |
| 125 | 3743 |
| 3744 def test_gbk_alias(self): | |
| 3745 # https://groups.google.com/d/msg/orthanc-users/WMM8LMbjpUc/02-1f_yFCgAJ | |
| 3746 # This test fails on Orthanc <= 1.3.0 | |
| 3747 i = UploadInstance(_REMOTE, '2017-09-19-GBK-Tumashu.dcm')['ID'] | |
| 3748 tags = DoGet(_REMOTE, '/instances/%s/tags?simplify' % i) | |
| 3749 self.assertEqual(tags['PatientName'], u'徐浩凯') | |
| 3750 self.assertEqual(tags['InstitutionName'], u'灌云县疾病预防控制中心') | |
| 126 | 3751 |
| 3752 | |
| 3753 def test_long_tag(self): | |
| 3754 i = UploadInstance(_REMOTE, 'DummyCTWithLongTag.dcm')['ID'] | |
| 3755 series = 'f2635388-f01d497a-15f7c06b-ad7dba06-c4c599fe' | |
| 3756 | |
| 3757 tags = DoGet(_REMOTE, '/instances/%s/tags' % i) | |
| 3758 self.assertTrue('0018,1020' in tags) | |
| 3759 self.assertEqual('SoftwareVersions', tags['0018,1020']['Name']) | |
| 3760 self.assertEqual('TooLong', tags['0018,1020']['Type']) | |
| 3761 self.assertEqual(None, tags['0018,1020']['Value']) | |
| 3762 | |
| 3763 tags = DoGet(_REMOTE, '/instances/%s/tags?ignore-length=0018-1020' % i) | |
| 3764 self.assertTrue('0018,1020' in tags) | |
| 3765 self.assertEqual('SoftwareVersions', tags['0018,1020']['Name']) | |
| 3766 self.assertEqual('String', tags['0018,1020']['Type']) | |
| 3767 self.assertTrue(tags['0018,1020']['Value'].startswith('Lorem ipsum dolor sit amet')) | |
| 3768 | |
| 3769 tags = DoGet(_REMOTE, '/instances/%s/tags?simplify' % i) | |
| 3770 self.assertTrue('SoftwareVersions' in tags) | |
| 3771 self.assertEqual(None, tags['SoftwareVersions']) | |
| 3772 self.assertTrue('HeartRate' in tags) | |
| 3773 self.assertEqual(474, int(tags['HeartRate'])) | |
| 3774 | |
| 3775 tags = DoGet(_REMOTE, '/instances/%s/simplified-tags' % i) | |
| 3776 self.assertTrue('SoftwareVersions' in tags) | |
| 3777 self.assertEqual(None, tags['SoftwareVersions']) | |
| 3778 | |
| 3779 tags = DoGet(_REMOTE, '/instances/%s/tags?simplify&ignore-length=0018-1020' % i) | |
| 3780 self.assertTrue('SoftwareVersions' in tags) | |
| 3781 self.assertTrue(tags['SoftwareVersions'].startswith('Lorem ipsum dolor sit amet')) | |
| 3782 | |
| 3783 tags = DoGet(_REMOTE, '/instances/%s/tags?simplify&ignore-length=SoftwareVersions' % i) | |
| 3784 self.assertTrue('SoftwareVersions' in tags) | |
| 3785 self.assertTrue(tags['SoftwareVersions'].startswith('Lorem ipsum dolor sit amet')) | |
| 3786 | |
| 3787 tags = DoGet(_REMOTE, '/series/%s/instances-tags' % series) | |
| 3788 self.assertEqual(1, len(tags)) | |
| 3789 self.assertTrue(i in tags.keys()) | |
| 3790 self.assertTrue('0018,1020' in tags[i]) | |
| 3791 self.assertEqual('TooLong', tags[i]['0018,1020']['Type']) | |
| 3792 | |
| 3793 tags = DoGet(_REMOTE, '/series/%s/instances-tags?ignore-length=SoftwareVersions' % series) | |
| 3794 self.assertEqual(1, len(tags)) | |
| 3795 self.assertTrue(i in tags.keys()) | |
| 3796 self.assertTrue('0018,1020' in tags[i]) | |
| 3797 self.assertEqual('String', tags[i]['0018,1020']['Type']) | |
| 3798 self.assertTrue(tags[i]['0018,1020']['Value'].startswith('Lorem ipsum dolor sit amet')) | |
| 3799 | |
|
127
1eea4d3a1ba9
test_extended_media
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
126
diff
changeset
|
3800 |
|
1eea4d3a1ba9
test_extended_media
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
126
diff
changeset
|
3801 def test_extended_media(self): |
|
1eea4d3a1ba9
test_extended_media
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
126
diff
changeset
|
3802 UploadInstance(_REMOTE, 'Knee/T1/IM-0001-0001.dcm') |
|
1eea4d3a1ba9
test_extended_media
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
126
diff
changeset
|
3803 |
|
1eea4d3a1ba9
test_extended_media
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
126
diff
changeset
|
3804 z = GetArchive(_REMOTE, '/patients/%s/media?extended' % DoGet(_REMOTE, '/patients')[0]) |
|
1eea4d3a1ba9
test_extended_media
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
126
diff
changeset
|
3805 self.assertEqual(2, len(z.namelist())) |
|
1eea4d3a1ba9
test_extended_media
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
126
diff
changeset
|
3806 self.assertTrue('IMAGES/IM0' in z.namelist()) |
|
1eea4d3a1ba9
test_extended_media
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
126
diff
changeset
|
3807 self.assertTrue('DICOMDIR' in z.namelist()) |
|
1eea4d3a1ba9
test_extended_media
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
126
diff
changeset
|
3808 |
|
1eea4d3a1ba9
test_extended_media
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
126
diff
changeset
|
3809 try: |
|
1eea4d3a1ba9
test_extended_media
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
126
diff
changeset
|
3810 os.remove('/tmp/DICOMDIR') |
|
1eea4d3a1ba9
test_extended_media
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
126
diff
changeset
|
3811 except: |
|
1eea4d3a1ba9
test_extended_media
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
126
diff
changeset
|
3812 # The file does not exist |
|
1eea4d3a1ba9
test_extended_media
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
126
diff
changeset
|
3813 pass |
|
1eea4d3a1ba9
test_extended_media
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
126
diff
changeset
|
3814 |
|
1eea4d3a1ba9
test_extended_media
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
126
diff
changeset
|
3815 z.extract('DICOMDIR', '/tmp') |
|
1eea4d3a1ba9
test_extended_media
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
126
diff
changeset
|
3816 a = subprocess.check_output([ FindExecutable('dciodvfy'), '/tmp/DICOMDIR' ], |
|
1eea4d3a1ba9
test_extended_media
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
126
diff
changeset
|
3817 stderr = subprocess.STDOUT).split('\n') |
|
1eea4d3a1ba9
test_extended_media
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
126
diff
changeset
|
3818 self.assertEqual(5, len(a)) |
|
1eea4d3a1ba9
test_extended_media
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
126
diff
changeset
|
3819 self.assertTrue(a[0].startswith('Warning')) |
|
1eea4d3a1ba9
test_extended_media
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
126
diff
changeset
|
3820 self.assertEqual('BasicDirectory', a[1]) |
|
1eea4d3a1ba9
test_extended_media
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
126
diff
changeset
|
3821 self.assertTrue('not present in standard DICOM IOD' in a[2]) |
|
1eea4d3a1ba9
test_extended_media
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
126
diff
changeset
|
3822 self.assertTrue('not present in standard DICOM IOD' in a[3]) |
|
1eea4d3a1ba9
test_extended_media
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
126
diff
changeset
|
3823 self.assertEqual('', a[4]) |
|
1eea4d3a1ba9
test_extended_media
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
126
diff
changeset
|
3824 |
|
1eea4d3a1ba9
test_extended_media
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
126
diff
changeset
|
3825 a = subprocess.check_output([ FindExecutable('dcentvfy'), '/tmp/DICOMDIR' ], |
|
1eea4d3a1ba9
test_extended_media
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
126
diff
changeset
|
3826 stderr = subprocess.STDOUT).split('\n') |
|
1eea4d3a1ba9
test_extended_media
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
126
diff
changeset
|
3827 self.assertEqual(1, len(a)) |
|
1eea4d3a1ba9
test_extended_media
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
126
diff
changeset
|
3828 self.assertEqual('', a[0]) |
|
1eea4d3a1ba9
test_extended_media
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
126
diff
changeset
|
3829 |
|
1eea4d3a1ba9
test_extended_media
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
126
diff
changeset
|
3830 a = subprocess.check_output([ FindExecutable('dcm2xml'), '/tmp/DICOMDIR' ]) |
|
1eea4d3a1ba9
test_extended_media
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
126
diff
changeset
|
3831 self.assertTrue(re.search('1.3.46.670589.11.17521.5.0.3124.2008081908590448738', a) != None) |
|
1eea4d3a1ba9
test_extended_media
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
126
diff
changeset
|
3832 |
|
1eea4d3a1ba9
test_extended_media
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
126
diff
changeset
|
3833 # Check the presence of the series description (extended tag) |
|
1eea4d3a1ba9
test_extended_media
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
126
diff
changeset
|
3834 self.assertTrue(re.search('T1W_aTSE', a) != None) |
|
1eea4d3a1ba9
test_extended_media
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
126
diff
changeset
|
3835 |
|
1eea4d3a1ba9
test_extended_media
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
126
diff
changeset
|
3836 os.remove('/tmp/DICOMDIR') |
|
1eea4d3a1ba9
test_extended_media
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
126
diff
changeset
|
3837 |
|
1eea4d3a1ba9
test_extended_media
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
126
diff
changeset
|
3838 |
|
132
149144d854bb
Orthanc.test_anonymize_relationships_1/2
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
130
diff
changeset
|
3839 def test_anonymize_relationships_1(self): |
|
133
f0d4c4707e64
test_anonymize_relationships_3
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
132
diff
changeset
|
3840 UploadInstance(_REMOTE, 'Knee/T1/IM-0001-0001.dcm') |
|
f0d4c4707e64
test_anonymize_relationships_3
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
132
diff
changeset
|
3841 UploadInstance(_REMOTE, 'Knee/T1/IM-0001-0002.dcm') |
|
132
149144d854bb
Orthanc.test_anonymize_relationships_1/2
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
130
diff
changeset
|
3842 study = '0a9b3153-2512774b-2d9580de-1fc3dcf6-3bd83918' |
|
149144d854bb
Orthanc.test_anonymize_relationships_1/2
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
130
diff
changeset
|
3843 |
|
149144d854bb
Orthanc.test_anonymize_relationships_1/2
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
130
diff
changeset
|
3844 anonymized = DoPost(_REMOTE, '/studies/%s/anonymize' % study, |
|
149144d854bb
Orthanc.test_anonymize_relationships_1/2
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
130
diff
changeset
|
3845 '{}', |
|
149144d854bb
Orthanc.test_anonymize_relationships_1/2
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
130
diff
changeset
|
3846 'application/json')['ID'] |
|
149144d854bb
Orthanc.test_anonymize_relationships_1/2
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
130
diff
changeset
|
3847 |
|
149144d854bb
Orthanc.test_anonymize_relationships_1/2
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
130
diff
changeset
|
3848 a = DoGet(_REMOTE, '/studies/%s/instances' % study) |
|
149144d854bb
Orthanc.test_anonymize_relationships_1/2
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
130
diff
changeset
|
3849 self.assertEqual(2, len(a)) |
|
149144d854bb
Orthanc.test_anonymize_relationships_1/2
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
130
diff
changeset
|
3850 a1 = a[0]['ID'] |
|
149144d854bb
Orthanc.test_anonymize_relationships_1/2
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
130
diff
changeset
|
3851 a2 = a[1]['ID'] |
|
149144d854bb
Orthanc.test_anonymize_relationships_1/2
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
130
diff
changeset
|
3852 |
|
149144d854bb
Orthanc.test_anonymize_relationships_1/2
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
130
diff
changeset
|
3853 b = DoGet(_REMOTE, '/studies/%s/instances' % anonymized) |
|
149144d854bb
Orthanc.test_anonymize_relationships_1/2
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
130
diff
changeset
|
3854 self.assertEqual(2, len(b)) |
|
149144d854bb
Orthanc.test_anonymize_relationships_1/2
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
130
diff
changeset
|
3855 b1 = b[0]['ID'] |
|
149144d854bb
Orthanc.test_anonymize_relationships_1/2
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
130
diff
changeset
|
3856 b2 = b[1]['ID'] |
|
149144d854bb
Orthanc.test_anonymize_relationships_1/2
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
130
diff
changeset
|
3857 |
|
149144d854bb
Orthanc.test_anonymize_relationships_1/2
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
130
diff
changeset
|
3858 SEQUENCE = '/instances/%s/content/ReferencedImageSequence' |
|
149144d854bb
Orthanc.test_anonymize_relationships_1/2
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
130
diff
changeset
|
3859 SOP = '/instances/%s/content/ReferencedImageSequence/%d/ReferencedSOPInstanceUID' |
|
149144d854bb
Orthanc.test_anonymize_relationships_1/2
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
130
diff
changeset
|
3860 CLASS = '/instances/%s/content/ReferencedImageSequence/%d/ReferencedSOPClassUID' |
|
149144d854bb
Orthanc.test_anonymize_relationships_1/2
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
130
diff
changeset
|
3861 FRAME = '/instances/%s/content/FrameOfReferenceUID' |
|
149144d854bb
Orthanc.test_anonymize_relationships_1/2
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
130
diff
changeset
|
3862 |
|
149144d854bb
Orthanc.test_anonymize_relationships_1/2
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
130
diff
changeset
|
3863 self.assertEqual(DoGet(_REMOTE, FRAME % a1), |
|
149144d854bb
Orthanc.test_anonymize_relationships_1/2
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
130
diff
changeset
|
3864 DoGet(_REMOTE, FRAME % a2)) |
|
149144d854bb
Orthanc.test_anonymize_relationships_1/2
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
130
diff
changeset
|
3865 self.assertEqual(DoGet(_REMOTE, FRAME % b1), |
|
149144d854bb
Orthanc.test_anonymize_relationships_1/2
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
130
diff
changeset
|
3866 DoGet(_REMOTE, FRAME % b2)) |
|
149144d854bb
Orthanc.test_anonymize_relationships_1/2
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
130
diff
changeset
|
3867 self.assertNotEqual(DoGet(_REMOTE, FRAME % a1), |
|
149144d854bb
Orthanc.test_anonymize_relationships_1/2
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
130
diff
changeset
|
3868 DoGet(_REMOTE, FRAME % b1)) |
|
149144d854bb
Orthanc.test_anonymize_relationships_1/2
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
130
diff
changeset
|
3869 self.assertNotEqual(DoGet(_REMOTE, FRAME % a2), |
|
149144d854bb
Orthanc.test_anonymize_relationships_1/2
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
130
diff
changeset
|
3870 DoGet(_REMOTE, FRAME % b2)) |
|
149144d854bb
Orthanc.test_anonymize_relationships_1/2
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
130
diff
changeset
|
3871 |
|
149144d854bb
Orthanc.test_anonymize_relationships_1/2
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
130
diff
changeset
|
3872 self.assertEqual(3, len(DoGet(_REMOTE, SEQUENCE % a1))) |
|
149144d854bb
Orthanc.test_anonymize_relationships_1/2
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
130
diff
changeset
|
3873 self.assertEqual(3, len(DoGet(_REMOTE, SEQUENCE % a2))) |
|
149144d854bb
Orthanc.test_anonymize_relationships_1/2
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
130
diff
changeset
|
3874 self.assertEqual(3, len(DoGet(_REMOTE, SEQUENCE % b1))) |
|
149144d854bb
Orthanc.test_anonymize_relationships_1/2
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
130
diff
changeset
|
3875 self.assertEqual(3, len(DoGet(_REMOTE, SEQUENCE % b2))) |
|
149144d854bb
Orthanc.test_anonymize_relationships_1/2
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
130
diff
changeset
|
3876 |
|
149144d854bb
Orthanc.test_anonymize_relationships_1/2
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
130
diff
changeset
|
3877 for i in range(3): |
|
149144d854bb
Orthanc.test_anonymize_relationships_1/2
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
130
diff
changeset
|
3878 self.assertEqual(DoGet(_REMOTE, SOP % (a1, i)), |
|
149144d854bb
Orthanc.test_anonymize_relationships_1/2
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
130
diff
changeset
|
3879 DoGet(_REMOTE, SOP % (a2, i))) |
|
149144d854bb
Orthanc.test_anonymize_relationships_1/2
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
130
diff
changeset
|
3880 self.assertEqual(DoGet(_REMOTE, SOP % (b1, i)), |
|
149144d854bb
Orthanc.test_anonymize_relationships_1/2
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
130
diff
changeset
|
3881 DoGet(_REMOTE, SOP % (b2, i))) |
|
149144d854bb
Orthanc.test_anonymize_relationships_1/2
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
130
diff
changeset
|
3882 self.assertNotEqual(DoGet(_REMOTE, SOP % (a1, i)), |
|
149144d854bb
Orthanc.test_anonymize_relationships_1/2
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
130
diff
changeset
|
3883 DoGet(_REMOTE, SOP % (b1, i))) |
|
149144d854bb
Orthanc.test_anonymize_relationships_1/2
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
130
diff
changeset
|
3884 self.assertNotEqual(DoGet(_REMOTE, SOP % (a2, i)), |
|
149144d854bb
Orthanc.test_anonymize_relationships_1/2
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
130
diff
changeset
|
3885 DoGet(_REMOTE, SOP % (b2, i))) |
|
149144d854bb
Orthanc.test_anonymize_relationships_1/2
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
130
diff
changeset
|
3886 self.assertEqual(DoGet(_REMOTE, CLASS % (a1, i)), |
|
149144d854bb
Orthanc.test_anonymize_relationships_1/2
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
130
diff
changeset
|
3887 DoGet(_REMOTE, CLASS % (b1, i))) |
|
149144d854bb
Orthanc.test_anonymize_relationships_1/2
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
130
diff
changeset
|
3888 self.assertEqual(DoGet(_REMOTE, CLASS % (a2, i)), |
|
149144d854bb
Orthanc.test_anonymize_relationships_1/2
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
130
diff
changeset
|
3889 DoGet(_REMOTE, CLASS % (b2, i))) |
|
149144d854bb
Orthanc.test_anonymize_relationships_1/2
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
130
diff
changeset
|
3890 |
|
149144d854bb
Orthanc.test_anonymize_relationships_1/2
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
130
diff
changeset
|
3891 |
|
149144d854bb
Orthanc.test_anonymize_relationships_1/2
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
130
diff
changeset
|
3892 def test_anonymize_relationships_2(self): |
|
133
f0d4c4707e64
test_anonymize_relationships_3
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
132
diff
changeset
|
3893 UploadInstance(_REMOTE, 'Comunix/Ct/IM-0001-0001.dcm') |
|
f0d4c4707e64
test_anonymize_relationships_3
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
132
diff
changeset
|
3894 UploadInstance(_REMOTE, 'Comunix/Ct/IM-0001-0002.dcm') |
|
132
149144d854bb
Orthanc.test_anonymize_relationships_1/2
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
130
diff
changeset
|
3895 study = '6c65289b-db2fcb71-7eaf73f4-8e12470c-a4d6d7cf' |
|
149144d854bb
Orthanc.test_anonymize_relationships_1/2
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
130
diff
changeset
|
3896 |
|
149144d854bb
Orthanc.test_anonymize_relationships_1/2
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
130
diff
changeset
|
3897 anonymized = DoPost(_REMOTE, '/studies/%s/anonymize' % study, |
|
149144d854bb
Orthanc.test_anonymize_relationships_1/2
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
130
diff
changeset
|
3898 '{}', |
|
149144d854bb
Orthanc.test_anonymize_relationships_1/2
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
130
diff
changeset
|
3899 'application/json')['ID'] |
|
149144d854bb
Orthanc.test_anonymize_relationships_1/2
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
130
diff
changeset
|
3900 |
|
149144d854bb
Orthanc.test_anonymize_relationships_1/2
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
130
diff
changeset
|
3901 a = DoGet(_REMOTE, '/studies/%s/instances' % study) |
|
149144d854bb
Orthanc.test_anonymize_relationships_1/2
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
130
diff
changeset
|
3902 self.assertEqual(2, len(a)) |
|
149144d854bb
Orthanc.test_anonymize_relationships_1/2
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
130
diff
changeset
|
3903 a1 = a[0]['ID'] |
|
149144d854bb
Orthanc.test_anonymize_relationships_1/2
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
130
diff
changeset
|
3904 a2 = a[1]['ID'] |
|
149144d854bb
Orthanc.test_anonymize_relationships_1/2
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
130
diff
changeset
|
3905 |
|
149144d854bb
Orthanc.test_anonymize_relationships_1/2
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
130
diff
changeset
|
3906 b = DoGet(_REMOTE, '/studies/%s/instances' % anonymized) |
|
149144d854bb
Orthanc.test_anonymize_relationships_1/2
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
130
diff
changeset
|
3907 self.assertEqual(2, len(b)) |
|
149144d854bb
Orthanc.test_anonymize_relationships_1/2
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
130
diff
changeset
|
3908 b1 = b[0]['ID'] |
|
149144d854bb
Orthanc.test_anonymize_relationships_1/2
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
130
diff
changeset
|
3909 b2 = b[1]['ID'] |
|
149144d854bb
Orthanc.test_anonymize_relationships_1/2
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
130
diff
changeset
|
3910 |
|
149144d854bb
Orthanc.test_anonymize_relationships_1/2
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
130
diff
changeset
|
3911 SEQUENCE = '/instances/%s/content/SourceImageSequence' |
|
149144d854bb
Orthanc.test_anonymize_relationships_1/2
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
130
diff
changeset
|
3912 SOP = '/instances/%s/content/SourceImageSequence/%d/ReferencedSOPInstanceUID' |
|
149144d854bb
Orthanc.test_anonymize_relationships_1/2
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
130
diff
changeset
|
3913 CLASS = '/instances/%s/content/SourceImageSequence/%d/ReferencedSOPClassUID' |
|
149144d854bb
Orthanc.test_anonymize_relationships_1/2
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
130
diff
changeset
|
3914 |
|
149144d854bb
Orthanc.test_anonymize_relationships_1/2
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
130
diff
changeset
|
3915 self.assertEqual(1, len(DoGet(_REMOTE, SEQUENCE % a1))) |
|
149144d854bb
Orthanc.test_anonymize_relationships_1/2
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
130
diff
changeset
|
3916 self.assertEqual(1, len(DoGet(_REMOTE, SEQUENCE % a2))) |
|
149144d854bb
Orthanc.test_anonymize_relationships_1/2
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
130
diff
changeset
|
3917 self.assertEqual(1, len(DoGet(_REMOTE, SEQUENCE % b1))) |
|
149144d854bb
Orthanc.test_anonymize_relationships_1/2
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
130
diff
changeset
|
3918 self.assertEqual(1, len(DoGet(_REMOTE, SEQUENCE % b2))) |
|
149144d854bb
Orthanc.test_anonymize_relationships_1/2
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
130
diff
changeset
|
3919 self.assertEqual(DoGet(_REMOTE, SOP % (a1, 0)), |
|
149144d854bb
Orthanc.test_anonymize_relationships_1/2
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
130
diff
changeset
|
3920 DoGet(_REMOTE, SOP % (a2, 0))) |
|
149144d854bb
Orthanc.test_anonymize_relationships_1/2
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
130
diff
changeset
|
3921 self.assertEqual(DoGet(_REMOTE, SOP % (b1, 0)), |
|
149144d854bb
Orthanc.test_anonymize_relationships_1/2
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
130
diff
changeset
|
3922 DoGet(_REMOTE, SOP % (b2, 0))) |
|
149144d854bb
Orthanc.test_anonymize_relationships_1/2
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
130
diff
changeset
|
3923 self.assertNotEqual(DoGet(_REMOTE, SOP % (a1, 0)), |
|
149144d854bb
Orthanc.test_anonymize_relationships_1/2
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
130
diff
changeset
|
3924 DoGet(_REMOTE, SOP % (b1, 0))) |
|
149144d854bb
Orthanc.test_anonymize_relationships_1/2
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
130
diff
changeset
|
3925 self.assertNotEqual(DoGet(_REMOTE, SOP % (a2, 0)), |
|
149144d854bb
Orthanc.test_anonymize_relationships_1/2
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
130
diff
changeset
|
3926 DoGet(_REMOTE, SOP % (b2, 0))) |
|
149144d854bb
Orthanc.test_anonymize_relationships_1/2
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
130
diff
changeset
|
3927 self.assertEqual(DoGet(_REMOTE, CLASS % (a1, 0)), |
|
149144d854bb
Orthanc.test_anonymize_relationships_1/2
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
130
diff
changeset
|
3928 DoGet(_REMOTE, CLASS % (b1, 0))) |
|
149144d854bb
Orthanc.test_anonymize_relationships_1/2
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
130
diff
changeset
|
3929 self.assertEqual(DoGet(_REMOTE, CLASS % (a2, 0)), |
|
149144d854bb
Orthanc.test_anonymize_relationships_1/2
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
130
diff
changeset
|
3930 DoGet(_REMOTE, CLASS % (b2, 0))) |
|
133
f0d4c4707e64
test_anonymize_relationships_3
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
132
diff
changeset
|
3931 |
|
f0d4c4707e64
test_anonymize_relationships_3
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
132
diff
changeset
|
3932 |
|
f0d4c4707e64
test_anonymize_relationships_3
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
132
diff
changeset
|
3933 def test_anonymize_relationships_3(self): |
|
f0d4c4707e64
test_anonymize_relationships_3
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
132
diff
changeset
|
3934 sr1 = UploadInstance(_REMOTE, 'HierarchicalAnonymization/StructuredReports/IM0')['ID'] |
|
f0d4c4707e64
test_anonymize_relationships_3
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
132
diff
changeset
|
3935 mr1 = UploadInstance(_REMOTE, 'HierarchicalAnonymization/StructuredReports/IM631')['ID'] |
|
f0d4c4707e64
test_anonymize_relationships_3
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
132
diff
changeset
|
3936 study = 'ef351eb2-c1147229-062736b8-35a151e3-e32d526b' |
|
f0d4c4707e64
test_anonymize_relationships_3
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
132
diff
changeset
|
3937 |
|
f0d4c4707e64
test_anonymize_relationships_3
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
132
diff
changeset
|
3938 anonymized = DoPost(_REMOTE, '/studies/%s/anonymize' % study, |
|
f0d4c4707e64
test_anonymize_relationships_3
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
132
diff
changeset
|
3939 { "Keep" : [ "ContentSequence" ] }) ['ID'] |
|
f0d4c4707e64
test_anonymize_relationships_3
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
132
diff
changeset
|
3940 |
|
f0d4c4707e64
test_anonymize_relationships_3
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
132
diff
changeset
|
3941 a = DoGet(_REMOTE, '/studies/%s/instances' % anonymized) |
|
f0d4c4707e64
test_anonymize_relationships_3
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
132
diff
changeset
|
3942 self.assertEqual(2, len(a)) |
|
f0d4c4707e64
test_anonymize_relationships_3
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
132
diff
changeset
|
3943 |
|
f0d4c4707e64
test_anonymize_relationships_3
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
132
diff
changeset
|
3944 if DoGet(_REMOTE, '/instances/%s/content/Modality' % a[0]['ID']) == 'SR': |
|
f0d4c4707e64
test_anonymize_relationships_3
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
132
diff
changeset
|
3945 sr2 = a[0]['ID'] |
|
f0d4c4707e64
test_anonymize_relationships_3
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
132
diff
changeset
|
3946 mr2 = a[1]['ID'] |
|
f0d4c4707e64
test_anonymize_relationships_3
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
132
diff
changeset
|
3947 else: |
|
f0d4c4707e64
test_anonymize_relationships_3
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
132
diff
changeset
|
3948 sr2 = a[1]['ID'] |
|
f0d4c4707e64
test_anonymize_relationships_3
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
132
diff
changeset
|
3949 mr2 = a[0]['ID'] |
|
f0d4c4707e64
test_anonymize_relationships_3
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
132
diff
changeset
|
3950 |
|
f0d4c4707e64
test_anonymize_relationships_3
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
132
diff
changeset
|
3951 self.assertEqual(DoGet(_REMOTE, '/instances/%s/content/Modality' % sr1), |
|
f0d4c4707e64
test_anonymize_relationships_3
Sebastien Jodogne <s.jodogne@gmail.com>
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diff
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|
3952 DoGet(_REMOTE, '/instances/%s/content/Modality' % sr2)) |
|
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|
3953 self.assertEqual(DoGet(_REMOTE, '/instances/%s/content/Modality' % mr1), |
|
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test_anonymize_relationships_3
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diff
changeset
|
3954 DoGet(_REMOTE, '/instances/%s/content/Modality' % mr2)) |
|
f0d4c4707e64
test_anonymize_relationships_3
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diff
changeset
|
3955 |
|
f0d4c4707e64
test_anonymize_relationships_3
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changeset
|
3956 mrUid1 = DoGet(_REMOTE, '/instances/%s' % mr1)['MainDicomTags']['SOPInstanceUID'] |
|
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|
3957 mrUid2 = DoGet(_REMOTE, '/instances/%s' % mr2)['MainDicomTags']['SOPInstanceUID'] |
|
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|
3958 mrSeries1 = DoGet(_REMOTE, '/instances/%s/content/SeriesInstanceUID' % mr1).strip('\x00') |
|
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diff
changeset
|
3959 mrSeries2 = DoGet(_REMOTE, '/instances/%s/content/SeriesInstanceUID' % mr2).strip('\x00') |
|
f0d4c4707e64
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diff
changeset
|
3960 mrStudy1 = DoGet(_REMOTE, '/instances/%s/content/StudyInstanceUID' % mr1).strip('\x00') |
|
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diff
changeset
|
3961 mrStudy2 = DoGet(_REMOTE, '/instances/%s/content/StudyInstanceUID' % mr2).strip('\x00') |
|
f0d4c4707e64
test_anonymize_relationships_3
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diff
changeset
|
3962 |
|
f0d4c4707e64
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diff
changeset
|
3963 PATH1 = '/instances/%s/content/CurrentRequestedProcedureEvidenceSequence' |
|
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diff
changeset
|
3964 PATH2 = PATH1 + '/0/ReferencedSeriesSequence' |
|
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|
3965 PATH3 = PATH2 + '/0/ReferencedSOPSequence' |
|
f0d4c4707e64
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diff
changeset
|
3966 PATH4 = PATH3 + '/0/ReferencedSOPInstanceUID' |
|
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|
3967 PATH5 = PATH3 + '/0/ReferencedSOPClassUID' |
|
f0d4c4707e64
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changeset
|
3968 |
|
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changeset
|
3969 self.assertEqual(1, len(DoGet(_REMOTE, PATH1 % sr1))) |
|
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changeset
|
3970 self.assertEqual(1, len(DoGet(_REMOTE, PATH2 % sr1))) |
|
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changeset
|
3971 self.assertEqual(1, len(DoGet(_REMOTE, PATH3 % sr1))) |
|
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changeset
|
3972 self.assertEqual(DoGet(_REMOTE, PATH4 % sr1), mrUid1) |
|
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|
3973 self.assertEqual(mrSeries1, DoGet(_REMOTE, (PATH2 + '/0/SeriesInstanceUID') % sr1).strip('\x00')) |
|
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|
3974 self.assertEqual(mrStudy1, DoGet(_REMOTE, (PATH1 + '/0/StudyInstanceUID') % sr1).strip('\x00')) |
|
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diff
changeset
|
3975 |
|
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test_anonymize_relationships_3
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diff
changeset
|
3976 self.assertEqual(1, len(DoGet(_REMOTE, PATH1 % sr2))) |
|
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diff
changeset
|
3977 self.assertEqual(1, len(DoGet(_REMOTE, PATH2 % sr2))) |
|
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diff
changeset
|
3978 self.assertEqual(1, len(DoGet(_REMOTE, PATH3 % sr2))) |
|
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changeset
|
3979 self.assertEqual(DoGet(_REMOTE, PATH5 % sr1), DoGet(_REMOTE, PATH5 % sr2)) |
|
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diff
changeset
|
3980 |
|
f0d4c4707e64
test_anonymize_relationships_3
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diff
changeset
|
3981 self.assertEqual(mrUid2, DoGet(_REMOTE, PATH4 % sr2).strip('\x00')) |
|
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changeset
|
3982 self.assertEqual(mrSeries2, DoGet(_REMOTE, (PATH2 + '/0/SeriesInstanceUID') % sr2).strip('\x00')) |
|
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diff
changeset
|
3983 self.assertEqual(mrStudy2, DoGet(_REMOTE, (PATH1 + '/0/StudyInstanceUID') % sr2).strip('\x00')) |
|
f0d4c4707e64
test_anonymize_relationships_3
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diff
changeset
|
3984 |
|
f0d4c4707e64
test_anonymize_relationships_3
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diff
changeset
|
3985 content1 = DoGet(_REMOTE, '/instances/%s/tags?simplify' % sr1) ['ContentSequence'] |
|
f0d4c4707e64
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diff
changeset
|
3986 content2 = DoGet(_REMOTE, '/instances/%s/tags?simplify' % sr2) ['ContentSequence'] |
|
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diff
changeset
|
3987 self.assertEqual(str(content1), str(content2)) |
|
141
5de178abe4d8
test_bitbucket_issue_94
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
138
diff
changeset
|
3988 |
|
5de178abe4d8
test_bitbucket_issue_94
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parents:
138
diff
changeset
|
3989 |
|
5de178abe4d8
test_bitbucket_issue_94
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diff
changeset
|
3990 def test_bitbucket_issue_94(self): |
|
5de178abe4d8
test_bitbucket_issue_94
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diff
changeset
|
3991 # "a simple instance modification should not modify FrameOfReferenceUID + ..." |
| 319 | 3992 # https://bugs.orthanc-server.com/show_bug.cgi?id=94 |
|
141
5de178abe4d8
test_bitbucket_issue_94
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138
diff
changeset
|
3993 i = UploadInstance(_REMOTE, 'Issue94.dcm')['ID'] |
|
5de178abe4d8
test_bitbucket_issue_94
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diff
changeset
|
3994 |
|
5de178abe4d8
test_bitbucket_issue_94
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138
diff
changeset
|
3995 source = DoGet(_REMOTE, '/instances/%s/attachments/dicom/data' % i) |
|
5de178abe4d8
test_bitbucket_issue_94
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diff
changeset
|
3996 |
|
5de178abe4d8
test_bitbucket_issue_94
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
138
diff
changeset
|
3997 modified = DoPost(_REMOTE, '/instances/%s/modify' % i, |
|
5de178abe4d8
test_bitbucket_issue_94
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138
diff
changeset
|
3998 { "Replace" : {"PatientID" : "toto"}, "Force": True}) |
|
5de178abe4d8
test_bitbucket_issue_94
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
138
diff
changeset
|
3999 |
|
5de178abe4d8
test_bitbucket_issue_94
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
138
diff
changeset
|
4000 anonymized = DoPost(_REMOTE, '/instances/%s/anonymize' % i) |
|
5de178abe4d8
test_bitbucket_issue_94
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
138
diff
changeset
|
4001 |
|
5de178abe4d8
test_bitbucket_issue_94
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
138
diff
changeset
|
4002 a = ExtractDicomTags(source, [ 'FrameOfReferenceUID' ]) |
|
5de178abe4d8
test_bitbucket_issue_94
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
138
diff
changeset
|
4003 self.assertEqual(1, len(a)) |
|
5de178abe4d8
test_bitbucket_issue_94
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
138
diff
changeset
|
4004 |
|
5de178abe4d8
test_bitbucket_issue_94
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
138
diff
changeset
|
4005 b = ExtractDicomTags(modified, [ 'FrameOfReferenceUID' ]) |
|
5de178abe4d8
test_bitbucket_issue_94
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
138
diff
changeset
|
4006 self.assertEqual(1, len(b)) |
|
5de178abe4d8
test_bitbucket_issue_94
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
138
diff
changeset
|
4007 |
|
5de178abe4d8
test_bitbucket_issue_94
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
138
diff
changeset
|
4008 c = ExtractDicomTags(anonymized, [ 'FrameOfReferenceUID' ]) |
|
5de178abe4d8
test_bitbucket_issue_94
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
138
diff
changeset
|
4009 self.assertEqual(1, len(c)) |
|
5de178abe4d8
test_bitbucket_issue_94
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
138
diff
changeset
|
4010 |
|
5de178abe4d8
test_bitbucket_issue_94
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
138
diff
changeset
|
4011 self.assertEqual(a, b) # Modified DICOM |
|
5de178abe4d8
test_bitbucket_issue_94
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
138
diff
changeset
|
4012 self.assertNotEqual(a, c) # Anonymized DICOM |
|
143
28d50ffac07d
test_metadata_origin
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
142
diff
changeset
|
4013 |
|
28d50ffac07d
test_metadata_origin
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
142
diff
changeset
|
4014 |
|
28d50ffac07d
test_metadata_origin
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
142
diff
changeset
|
4015 def test_metadata_origin(self): |
|
28d50ffac07d
test_metadata_origin
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
142
diff
changeset
|
4016 # Upload using the REST API |
|
144
7809fdf8056f
testing metadata?expand
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
143
diff
changeset
|
4017 i = UploadInstance(_REMOTE, 'Knee/T1/IM-0001-0001.dcm')['ID'] |
|
143
28d50ffac07d
test_metadata_origin
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
142
diff
changeset
|
4018 self.assertEqual('RestApi', DoGet(_REMOTE, '/instances/%s/metadata/Origin' % i)) |
|
28d50ffac07d
test_metadata_origin
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
142
diff
changeset
|
4019 self.assertEqual('', DoGet(_REMOTE, '/instances/%s/metadata/RemoteAET' % i)) |
|
28d50ffac07d
test_metadata_origin
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
142
diff
changeset
|
4020 self.assertNotEqual('', DoGet(_REMOTE, '/instances/%s/metadata/RemoteIP' % i)) |
|
28d50ffac07d
test_metadata_origin
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
142
diff
changeset
|
4021 self.assertRaises(Exception, lambda: DoGet(_REMOTE, '/instances/%s/metadata/CalledAET' % i)) |
| 315 | 4022 |
| 4023 # "HttpUsername" is empty iff "AuthenticationEnabled" is "false" | |
| 4024 self.assertTrue(DoGet(_REMOTE, '/instances/%s/metadata/HttpUsername' % i) in [ '', 'alice' ]) | |
| 4025 | |
|
144
7809fdf8056f
testing metadata?expand
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
143
diff
changeset
|
4026 m = DoGet(_REMOTE, '/instances/%s/metadata?expand' % i) |
|
7809fdf8056f
testing metadata?expand
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
143
diff
changeset
|
4027 self.assertEqual('RestApi', m['Origin']) |
|
7809fdf8056f
testing metadata?expand
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
143
diff
changeset
|
4028 self.assertEqual('', m['RemoteAET']) |
|
7809fdf8056f
testing metadata?expand
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
143
diff
changeset
|
4029 self.assertNotEqual('', m['RemoteIP']) |
|
7809fdf8056f
testing metadata?expand
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
143
diff
changeset
|
4030 self.assertFalse('CalledAET' in m) |
| 315 | 4031 self.assertTrue('HttpUsername' in m) |
| 4032 self.assertTrue(m['HttpUsername'] in [ '', 'alice' ]) | |
|
144
7809fdf8056f
testing metadata?expand
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
143
diff
changeset
|
4033 |
|
7809fdf8056f
testing metadata?expand
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
143
diff
changeset
|
4034 self.assertEqual('1.2.840.10008.1.2.4.91', m['TransferSyntax']) |
|
7809fdf8056f
testing metadata?expand
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
143
diff
changeset
|
4035 self.assertEqual('1.2.840.10008.5.1.4.1.1.4', m['SopClassUid']) |
|
7809fdf8056f
testing metadata?expand
Sebastien Jodogne <s.jodogne@gmail.com>
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diff
changeset
|
4036 self.assertEqual('1', m['IndexInSeries']) |
|
7809fdf8056f
testing metadata?expand
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
143
diff
changeset
|
4037 self.assertTrue('ReceptionDate' in m) |
|
7809fdf8056f
testing metadata?expand
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
143
diff
changeset
|
4038 |
|
143
28d50ffac07d
test_metadata_origin
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142
diff
changeset
|
4039 DoDelete(_REMOTE, '/instances/%s' % i) |
|
28d50ffac07d
test_metadata_origin
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
142
diff
changeset
|
4040 |
|
28d50ffac07d
test_metadata_origin
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142
diff
changeset
|
4041 # Upload using the DICOM protocol |
|
28d50ffac07d
test_metadata_origin
Sebastien Jodogne <s.jodogne@gmail.com>
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142
diff
changeset
|
4042 subprocess.check_call([ FindExecutable('storescu'), |
|
28d50ffac07d
test_metadata_origin
Sebastien Jodogne <s.jodogne@gmail.com>
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142
diff
changeset
|
4043 _REMOTE['Server'], str(_REMOTE['DicomPort']), |
|
144
7809fdf8056f
testing metadata?expand
Sebastien Jodogne <s.jodogne@gmail.com>
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143
diff
changeset
|
4044 GetDatabasePath('Knee/T1/IM-0001-0001.dcm'), |
|
7809fdf8056f
testing metadata?expand
Sebastien Jodogne <s.jodogne@gmail.com>
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143
diff
changeset
|
4045 '-xw' ]) # Propose JPEG2000 |
|
143
28d50ffac07d
test_metadata_origin
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142
diff
changeset
|
4046 self.assertEqual('DicomProtocol', DoGet(_REMOTE, '/instances/%s/metadata/Origin' % i)) |
|
28d50ffac07d
test_metadata_origin
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diff
changeset
|
4047 self.assertEqual('STORESCU', DoGet(_REMOTE, '/instances/%s/metadata/RemoteAET' % i)) |
|
28d50ffac07d
test_metadata_origin
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diff
changeset
|
4048 self.assertNotEqual('', DoGet(_REMOTE, '/instances/%s/metadata/RemoteIP' % i)) |
|
28d50ffac07d
test_metadata_origin
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142
diff
changeset
|
4049 self.assertEqual('ANY-SCP', DoGet(_REMOTE, '/instances/%s/metadata/CalledAET' % i)) |
|
28d50ffac07d
test_metadata_origin
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parents:
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diff
changeset
|
4050 self.assertRaises(Exception, lambda: DoGet(_REMOTE, '/instances/%s/metadata/HttpUsername' % i)) |
|
144
7809fdf8056f
testing metadata?expand
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143
diff
changeset
|
4051 |
|
7809fdf8056f
testing metadata?expand
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
143
diff
changeset
|
4052 m = DoGet(_REMOTE, '/instances/%s/metadata?expand' % i) |
|
7809fdf8056f
testing metadata?expand
Sebastien Jodogne <s.jodogne@gmail.com>
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diff
changeset
|
4053 self.assertEqual('DicomProtocol', m['Origin']) |
|
7809fdf8056f
testing metadata?expand
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143
diff
changeset
|
4054 self.assertEqual('STORESCU', m['RemoteAET']) |
|
7809fdf8056f
testing metadata?expand
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143
diff
changeset
|
4055 self.assertNotEqual('', m['RemoteIP']) |
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4056 self.assertEqual('ANY-SCP', m['CalledAET']) |
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|
4057 self.assertFalse('HttpUsername' in m) |
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4058 |
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4059 self.assertEqual('1.2.840.10008.1.2.4.91', m['TransferSyntax']) |
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4060 self.assertEqual('1.2.840.10008.5.1.4.1.1.4', m['SopClassUid']) |
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4061 self.assertEqual('1', m['IndexInSeries']) |
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|
4062 self.assertTrue('ReceptionDate' in m) |
| 147 | 4063 |
| 4064 | |
| 4065 def test_lua_deadlock(self): | |
| 4066 # Rana Asim Wajid (2018-07-14): "It does seem that the issue | |
| 4067 # is with the lua script I'm using for conversion of images to | |
| 4068 # JPEG2000. When the script is used with 1.4.0 the first | |
| 4069 # instance appears to be stored and then everything just | |
| 4070 # halts, ie Orthanc wont respond to anything after that." | |
| 4071 # https://groups.google.com/d/msg/orthanc-users/Rc-Beb42xc8/JUgdzrmCAgAJ | |
| 174 | 4072 InstallLuaScriptFromPath(_REMOTE, 'Lua/Jpeg2000Conversion.lua') |
| 147 | 4073 |
| 4074 subprocess.check_call([ FindExecutable('storescu'), | |
| 4075 _REMOTE['Server'], str(_REMOTE['DicomPort']), | |
| 4076 GetDatabasePath('Brainix/Flair/IM-0001-0001.dcm'), | |
| 4077 GetDatabasePath('Brainix/Flair/IM-0001-0002.dcm'), | |
| 4078 ]) | |
| 4079 | |
| 4080 instances = DoGet(_REMOTE, '/instances') | |
| 4081 self.assertEqual(2, len(instances)) | |
| 4082 | |
| 4083 t1 = DoGet(_REMOTE, '/instances/%s/metadata/TransferSyntax' % instances[0]) | |
| 4084 t2 = DoGet(_REMOTE, '/instances/%s/metadata/TransferSyntax' % instances[1]) | |
| 175 | 4085 self.assertEqual('1.2.840.10008.1.2.4.90', t1) # this will fail if libgdcm-tools is not installed |
| 147 | 4086 self.assertEqual(t1, t2); |
|
154
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4087 |
|
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|
4088 |
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|
4089 def test_find_group_length(self): |
|
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4090 # Orthanc <= 1.4.1 fails to answer C-FIND queries that contain |
|
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4091 # one of the Generic Group Length tags (*, 0x0000) |
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4092 a = UploadInstance(_REMOTE, 'Brainix/Flair/IM-0001-0001.dcm')['ID'] |
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4093 result = CallFindScu([ '-k', '0008,0052=STUDY', '-k', '0008,0000=80' ]) |
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4094 self.assertFalse('UnableToProcess' in result) |
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|
4095 self.assertFalse('E:' in result) |
|
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4096 |
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|
4097 |
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|
4098 def test_split(self): |
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4099 UploadInstance(_REMOTE, 'Knee/T1/IM-0001-0001.dcm') |
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4100 UploadInstance(_REMOTE, 'Knee/T2/IM-0001-0001.dcm') |
|
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4101 knee1Sop = '1.3.46.670589.11.17521.5.0.3124.2008081908590448738' |
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4102 knee2Sop = '1.3.46.670589.11.17521.5.0.3124.2008081909113806560' |
|
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4103 study = '0a9b3153-2512774b-2d9580de-1fc3dcf6-3bd83918' |
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4104 t1 = '6de73705-c4e65c1b-9d9ea1b5-cabcd8e7-f15e4285' |
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4105 t2 = 'bbf7a453-0d34251a-03663b55-46bb31b9-ffd74c59' |
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4106 |
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4107 self.assertEqual(1, len(DoGet(_REMOTE, '/studies'))) |
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4108 self.assertEqual(2, len(DoGet(_REMOTE, '/series'))) |
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4109 |
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4110 info = DoGet(_REMOTE, '/studies/%s' % study) |
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4111 self.assertTrue('ReferringPhysicianName' in info['MainDicomTags']) |
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4112 |
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|
4113 job = MonitorJob2(_REMOTE, lambda: DoPost |
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4114 (_REMOTE, '/studies/%s/split' % study, { |
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|
4115 'Series' : [ t2 ], |
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4116 'Replace' : { 'PatientName' : 'Hello' }, |
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|
4117 'Remove' : [ 'ReferringPhysicianName' ], |
| 181 | 4118 'KeepSource' : False, |
| 4119 'Asynchronous' : True | |
|
179
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4120 })) |
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|
4121 |
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|
4122 self.assertNotEqual(None, job) |
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|
4123 |
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|
4124 studies = set(DoGet(_REMOTE, '/studies')) |
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|
4125 self.assertEqual(2, len(studies)) |
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|
4126 |
|
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|
4127 series = set(DoGet(_REMOTE, '/series')) |
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|
4128 self.assertEqual(2, len(series)) |
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|
4129 self.assertTrue(t1 in series) |
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|
4130 |
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|
4131 study2 = DoGet(_REMOTE, '/jobs/%s' % job)['Content']['TargetStudy'] |
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|
4132 self.assertTrue(study in studies) |
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|
4133 self.assertTrue(study2 in studies) |
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|
4134 |
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|
4135 info = DoGet(_REMOTE, '/studies/%s' % study2) |
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|
4136 self.assertTrue('Hello', info['PatientMainDicomTags']['PatientName']) |
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|
4137 self.assertFalse('ReferringPhysicianName' in info['MainDicomTags']) |
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|
4138 |
|
254
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|
4139 sopInstanceUids = set() |
|
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|
4140 for i in DoGet(_REMOTE, '/instances?expand'): |
|
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changeset
|
4141 sopInstanceUids.add(i['MainDicomTags']['SOPInstanceUID']) |
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|
4142 |
|
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|
4143 self.assertTrue(knee1Sop in sopInstanceUids) |
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|
4144 |
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|
4145 # Fails if Orthanc <= 1.5.7 |
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4146 self.assertFalse(knee2Sop in sopInstanceUids) # Because "KeepSource" is False |
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4147 |
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|
4148 # One original instance is kept, another one is added because of the split |
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|
4149 self.assertEqual(2, len(sopInstanceUids)) |
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|
4150 |
|
179
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4151 |
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|
4152 def test_merge(self): |
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|
4153 UploadInstance(_REMOTE, 'Knee/T1/IM-0001-0001.dcm') |
|
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|
4154 UploadInstance(_REMOTE, 'Brainix/Flair/IM-0001-0001.dcm') |
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|
4155 kneeSop = '1.3.46.670589.11.17521.5.0.3124.2008081908590448738' |
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|
4156 brainixSop = '1.3.46.670589.11.0.0.11.4.2.0.8743.5.5396.2006120114314079549' |
|
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|
4157 knee = '0a9b3153-2512774b-2d9580de-1fc3dcf6-3bd83918' |
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|
4158 t1 = '6de73705-c4e65c1b-9d9ea1b5-cabcd8e7-f15e4285' |
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|
4159 brainix = '27f7126f-4f66fb14-03f4081b-f9341db2-53925988' |
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|
4160 flair = '1e2c125c-411b8e86-3f4fe68e-a7584dd3-c6da78f0' |
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|
4161 |
|
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|
4162 self.assertEqual(2, len(DoGet(_REMOTE, '/studies'))) |
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|
4163 self.assertEqual(2, len(DoGet(_REMOTE, '/series'))) |
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|
4164 |
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|
4165 job = MonitorJob2(_REMOTE, lambda: DoPost |
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|
4166 (_REMOTE, '/studies/%s/merge' % knee, { |
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|
4167 'Resources' : [ brainix ], |
| 181 | 4168 'KeepSource' : True, |
| 4169 'Synchronous' : False | |
|
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4170 })) |
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|
4171 |
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|
4172 self.assertNotEqual(None, job) |
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4173 |
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|
4174 studies = set(DoGet(_REMOTE, '/studies')) |
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|
4175 self.assertEqual(2, len(studies)) |
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4176 self.assertTrue(knee in studies) |
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|
4177 self.assertTrue(brainix in studies) |
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4178 |
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|
4179 series = set(DoGet(_REMOTE, '/studies/%s' % knee)['Series']) |
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|
4180 self.assertTrue(t1 in series) |
|
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4181 series.remove(t1) |
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4182 self.assertEqual(1, len(series)) |
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4183 |
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4184 instances = DoGet(_REMOTE, '/series/%s' % list(series)[0])['Instances'] |
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4185 self.assertEqual(1, len(instances)) |
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4186 merged = DoGet(_REMOTE, '/instances/%s/tags?simplify' % instances[0]) |
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4187 |
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4188 instances = DoGet(_REMOTE, '/series/%s' % t1)['Instances'] |
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4189 self.assertEqual(1, len(instances)) |
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4190 a = DoGet(_REMOTE, '/instances/%s/tags?simplify' % instances[0]) |
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4191 |
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4192 instances = DoGet(_REMOTE, '/series/%s' % flair)['Instances'] |
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4193 self.assertEqual(1, len(instances)) |
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4194 b = DoGet(_REMOTE, '/instances/%s/tags?simplify' % instances[0]) |
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4195 |
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4196 tags = DoGet(_REMOTE, '/studies/%s' % knee) |
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4197 |
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4198 for key in tags['PatientMainDicomTags']: |
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4199 self.assertEqual(a[key], merged[key]) |
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4200 if (key in b and key != 'PatientSex'): |
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4201 self.assertNotEqual(a[key], b[key]) |
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4202 |
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4203 for key in tags['MainDicomTags']: |
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4204 # Not in the patient/study module |
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4205 if (not key in [ 'InstitutionName', |
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4206 'RequestingPhysician', |
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4207 'RequestedProcedureDescription', ]): |
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4208 self.assertEqual(a[key], merged[key]) |
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4209 if (key in b): |
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4210 self.assertNotEqual(a[key], b[key]) |
|
254
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4211 |
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4212 sopInstanceUids = set() |
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4213 for i in DoGet(_REMOTE, '/instances?expand'): |
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4214 sopInstanceUids.add(i['MainDicomTags']['SOPInstanceUID']) |
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4215 |
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4216 self.assertTrue(kneeSop in sopInstanceUids) |
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4217 self.assertTrue(brainixSop in sopInstanceUids) |
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4218 |
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4219 # Fails if Orthanc <= 1.5.7 |
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4220 # The 2 original instances are kept, another one is added because of the merge |
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4221 self.assertEqual(3, len(sopInstanceUids)) |
|
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4222 |
| 187 | 4223 |
| 4224 def test_async_archive(self): | |
| 4225 # Testing the asynchronous generation of archives/medias (new | |
| 4226 # in Orthanc 1.4.3) | |
| 4227 UploadInstance(_REMOTE, 'Knee/T1/IM-0001-0001.dcm') | |
| 4228 UploadInstance(_REMOTE, 'Knee/T2/IM-0001-0001.dcm') | |
| 4229 | |
| 4230 kneeT1 = '6de73705-c4e65c1b-9d9ea1b5-cabcd8e7-f15e4285' | |
| 4231 kneeT2 = 'bbf7a453-0d34251a-03663b55-46bb31b9-ffd74c59' | |
| 4232 | |
| 4233 job = MonitorJob2(_REMOTE, lambda: DoPost | |
| 4234 (_REMOTE, '/studies/%s/archive' % kneeT1, { | |
| 4235 'Synchronous' : False | |
| 4236 })) | |
| 4237 | |
| 4238 z = GetArchive(_REMOTE, '/jobs/%s/archive' % job) | |
| 4239 self.assertEqual(1, len(z.namelist())) | |
| 4240 self.assertFalse('DICOMDIR' in z.namelist()) | |
| 4241 | |
|
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4242 info = DoGet(_REMOTE, '/jobs/%s' % job) |
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4243 self.assertEqual(0, info['Content']['ArchiveSizeMB']) # New in Orthanc 1.8.1 |
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|
4244 self.assertEqual(1, info['Content']['InstancesCount']) |
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4245 self.assertEqual(0, info['Content']['UncompressedSizeMB']) |
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4246 |
| 187 | 4247 job2 = MonitorJob2(_REMOTE, lambda: DoPost |
| 4248 (_REMOTE, '/studies/%s/media' % kneeT1, { | |
| 4249 'Synchronous' : False | |
| 4250 })) | |
| 4251 | |
| 4252 # The archive from the first job has been replaced by the | |
| 4253 # archive from second job (as MediaArchiveSize == 1) | |
| 4254 self.assertRaises(Exception, lambda: GetArchive(_REMOTE, '/jobs/%s/archive' % job)) | |
| 4255 | |
| 4256 z = GetArchive(_REMOTE, '/jobs/%s/archive' % job2) | |
| 4257 self.assertEqual(2, len(z.namelist())) | |
| 4258 self.assertTrue('DICOMDIR' in z.namelist()) | |
| 4259 | |
|
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|
4260 info = DoGet(_REMOTE, '/jobs/%s' % job2) |
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|
4261 self.assertEqual(0, info['Content']['ArchiveSizeMB']) # New in Orthanc 1.8.1 |
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|
4262 self.assertEqual(1, info['Content']['InstancesCount']) |
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|
4263 self.assertEqual(0, info['Content']['UncompressedSizeMB']) |
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4264 |
| 187 | 4265 job = MonitorJob2(_REMOTE, lambda: DoPost |
| 4266 (_REMOTE, '/tools/create-archive', { | |
| 4267 'Synchronous' : False, | |
| 4268 'Resources' : [ kneeT1, kneeT2 ], | |
| 4269 })) | |
| 4270 | |
| 4271 z = GetArchive(_REMOTE, '/jobs/%s/archive' % job) | |
| 4272 self.assertEqual(2, len(z.namelist())) | |
| 4273 self.assertFalse('DICOMDIR' in z.namelist()) | |
| 4274 | |
|
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|
4275 info = DoGet(_REMOTE, '/jobs/%s' % job) |
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|
4276 self.assertEqual(0, info['Content']['ArchiveSizeMB']) # New in Orthanc 1.8.1 |
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|
4277 self.assertEqual(2, info['Content']['InstancesCount']) |
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|
4278 self.assertEqual(0, info['Content']['UncompressedSizeMB']) |
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|
4279 |
| 187 | 4280 job = MonitorJob2(_REMOTE, lambda: DoPost |
| 4281 (_REMOTE, '/tools/create-media', { | |
| 4282 'Synchronous' : False, | |
| 4283 'Resources' : [ kneeT1, kneeT2 ], | |
| 4284 })) | |
| 4285 | |
| 4286 z = GetArchive(_REMOTE, '/jobs/%s/archive' % job) | |
| 4287 self.assertEqual(3, len(z.namelist())) | |
| 4288 self.assertTrue('DICOMDIR' in z.namelist()) | |
|
188
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|
4289 |
|
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|
4290 self.assertEqual(0, info['Content']['ArchiveSizeMB']) # New in Orthanc 1.8.1 |
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|
4291 self.assertEqual(2, info['Content']['InstancesCount']) |
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|
4292 self.assertEqual(0, info['Content']['UncompressedSizeMB']) |
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4293 |
| 187 | 4294 |
|
188
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|
4295 def test_queries_hierarchy(self): |
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|
4296 UploadInstance(_REMOTE, 'Knee/T1/IM-0001-0001.dcm') |
|
189
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|
4297 UploadInstance(_REMOTE, 'Brainix/Flair/IM-0001-0001.dcm') |
|
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4298 |
|
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|
4299 tags = { |
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4300 'NumberOfPatientRelatedInstances' : '', |
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4301 'NumberOfPatientRelatedSeries' : '', |
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4302 'NumberOfPatientRelatedStudies' : '', |
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|
4303 'NumberOfStudyRelatedInstances' : '', |
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4304 'NumberOfStudyRelatedSeries' : '', |
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|
4305 'NumberOfSeriesRelatedInstances' : '', |
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4306 } |
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|
4307 |
|
189
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|
4308 tags2 = copy.copy(tags) |
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4309 tags2['PatientID'] = '887' # Only consider the "Knee" patient |
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4310 |
|
188
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4311 patient = DoPost(_REMOTE, '/modalities/self/query', { |
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4312 'Level' : 'Patient', |
|
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4313 'Query' : tags2 |
|
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4314 }) ['ID'] |
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4315 |
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|
4316 study = DoPost(_REMOTE, '/modalities/self/query', { |
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4317 'Level' : 'Study', |
|
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4318 'Query' : tags2 |
|
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4319 }) ['ID'] |
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4320 |
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|
4321 series = DoPost(_REMOTE, '/modalities/self/query', { |
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4322 'Level' : 'Series', |
|
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4323 'Query' : tags2 |
|
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4324 }) ['ID'] |
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4325 |
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4326 instance = DoPost(_REMOTE, '/modalities/self/query', { |
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diff
changeset
|
4327 'Level' : 'Instance', |
|
189
11719f19bd62
test_dicom_disk_size
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
188
diff
changeset
|
4328 'Query' : tags2 |
|
188
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diff
changeset
|
4329 }) ['ID'] |
|
7d585263808b
new test: test_queries_hierarchy
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diff
changeset
|
4330 |
|
7d585263808b
new test: test_queries_hierarchy
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diff
changeset
|
4331 p = DoGet(_REMOTE, '/queries/%s/answers?expand&simplify' % patient) |
|
7d585263808b
new test: test_queries_hierarchy
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diff
changeset
|
4332 self.assertEqual(1, len(p)) |
|
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new test: test_queries_hierarchy
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diff
changeset
|
4333 self.assertEqual('887', p[0]['PatientID']) |
|
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new test: test_queries_hierarchy
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diff
changeset
|
4334 self.assertEqual('1', p[0]['NumberOfPatientRelatedInstances']) |
|
7d585263808b
new test: test_queries_hierarchy
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diff
changeset
|
4335 self.assertEqual('1', p[0]['NumberOfPatientRelatedSeries']) |
|
7d585263808b
new test: test_queries_hierarchy
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diff
changeset
|
4336 self.assertEqual('1', p[0]['NumberOfPatientRelatedStudies']) |
|
7d585263808b
new test: test_queries_hierarchy
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diff
changeset
|
4337 self.assertFalse('NumberOfStudyRelatedInstances' in p[0]) |
|
7d585263808b
new test: test_queries_hierarchy
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parents:
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diff
changeset
|
4338 self.assertFalse('NumberOfStudyRelatedSeries' in p[0]) |
|
7d585263808b
new test: test_queries_hierarchy
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diff
changeset
|
4339 self.assertFalse('NumberOfSeriesRelatedInstances' in p[0]) |
|
7d585263808b
new test: test_queries_hierarchy
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diff
changeset
|
4340 |
|
7d585263808b
new test: test_queries_hierarchy
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diff
changeset
|
4341 p = DoGet(_REMOTE, '/queries/%s/answers?expand&simplify' % study) |
|
7d585263808b
new test: test_queries_hierarchy
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diff
changeset
|
4342 self.assertEqual(1, len(p)) |
|
7d585263808b
new test: test_queries_hierarchy
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diff
changeset
|
4343 self.assertEqual('2.16.840.1.113669.632.20.121711.10000160881', p[0]['StudyInstanceUID']) |
|
7d585263808b
new test: test_queries_hierarchy
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diff
changeset
|
4344 self.assertEqual('1', p[0]['NumberOfStudyRelatedInstances']) |
|
7d585263808b
new test: test_queries_hierarchy
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diff
changeset
|
4345 self.assertEqual('1', p[0]['NumberOfStudyRelatedSeries']) |
|
7d585263808b
new test: test_queries_hierarchy
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parents:
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diff
changeset
|
4346 self.assertFalse('NumberOfPatientRelatedInstances' in p[0]) |
|
7d585263808b
new test: test_queries_hierarchy
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parents:
187
diff
changeset
|
4347 self.assertFalse('NumberOfPatientRelatedSeries' in p[0]) |
|
7d585263808b
new test: test_queries_hierarchy
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parents:
187
diff
changeset
|
4348 self.assertFalse('NumberOfPatientRelatedInstances' in p[0]) |
|
7d585263808b
new test: test_queries_hierarchy
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
changeset
|
4349 self.assertFalse('NumberOfSeriesRelatedInstances' in p[0]) |
|
7d585263808b
new test: test_queries_hierarchy
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parents:
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diff
changeset
|
4350 |
|
7d585263808b
new test: test_queries_hierarchy
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diff
changeset
|
4351 p = DoGet(_REMOTE, '/queries/%s/answers?expand&simplify' % series) |
|
7d585263808b
new test: test_queries_hierarchy
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diff
changeset
|
4352 self.assertEqual(1, len(p)) |
|
7d585263808b
new test: test_queries_hierarchy
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diff
changeset
|
4353 self.assertEqual('1.3.46.670589.11.17521.5.0.3124.2008081908564160709', p[0]['SeriesInstanceUID']) |
|
7d585263808b
new test: test_queries_hierarchy
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diff
changeset
|
4354 self.assertEqual('1', p[0]['NumberOfSeriesRelatedInstances']) |
|
7d585263808b
new test: test_queries_hierarchy
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parents:
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diff
changeset
|
4355 self.assertFalse('NumberOfPatientRelatedInstances' in p[0]) |
|
7d585263808b
new test: test_queries_hierarchy
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parents:
187
diff
changeset
|
4356 self.assertFalse('NumberOfPatientRelatedSeries' in p[0]) |
|
7d585263808b
new test: test_queries_hierarchy
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
187
diff
changeset
|
4357 self.assertFalse('NumberOfPatientRelatedInstances' in p[0]) |
|
7d585263808b
new test: test_queries_hierarchy
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
changeset
|
4358 self.assertFalse('NumberOfStudyRelatedInstances' in p[0]) |
|
7d585263808b
new test: test_queries_hierarchy
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parents:
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diff
changeset
|
4359 self.assertFalse('NumberOfStudyRelatedSeries' in p[0]) |
|
7d585263808b
new test: test_queries_hierarchy
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parents:
187
diff
changeset
|
4360 |
|
7d585263808b
new test: test_queries_hierarchy
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parents:
187
diff
changeset
|
4361 p = DoGet(_REMOTE, '/queries/%s/answers?expand&simplify' % instance) |
|
7d585263808b
new test: test_queries_hierarchy
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diff
changeset
|
4362 self.assertEqual(1, len(p)) |
|
7d585263808b
new test: test_queries_hierarchy
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
changeset
|
4363 self.assertEqual('1.3.46.670589.11.17521.5.0.3124.2008081908590448738', p[0]['SOPInstanceUID']) |
|
7d585263808b
new test: test_queries_hierarchy
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parents:
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diff
changeset
|
4364 |
|
7d585263808b
new test: test_queries_hierarchy
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parents:
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diff
changeset
|
4365 j = DoPost(_REMOTE, '/queries/%s/answers/0/query-studies' % patient, |
|
7d585263808b
new test: test_queries_hierarchy
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parents:
187
diff
changeset
|
4366 { 'Query' : tags }) ['ID'] |
|
7d585263808b
new test: test_queries_hierarchy
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parents:
187
diff
changeset
|
4367 self.assertEqual(DoGet(_REMOTE, '/queries/%s/answers?expand&simplify' % j), |
|
7d585263808b
new test: test_queries_hierarchy
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
187
diff
changeset
|
4368 DoGet(_REMOTE, '/queries/%s/answers?expand&simplify' % study)) |
|
189
11719f19bd62
test_dicom_disk_size
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
188
diff
changeset
|
4369 |
|
188
7d585263808b
new test: test_queries_hierarchy
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
187
diff
changeset
|
4370 j = DoPost(_REMOTE, '/queries/%s/answers/0/query-series' % patient, |
|
7d585263808b
new test: test_queries_hierarchy
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
187
diff
changeset
|
4371 { 'Query' : tags }) ['ID'] |
|
7d585263808b
new test: test_queries_hierarchy
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
187
diff
changeset
|
4372 self.assertEqual(DoGet(_REMOTE, '/queries/%s/answers?expand&simplify' % j), |
|
7d585263808b
new test: test_queries_hierarchy
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
187
diff
changeset
|
4373 DoGet(_REMOTE, '/queries/%s/answers?expand&simplify' % series)) |
|
7d585263808b
new test: test_queries_hierarchy
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
187
diff
changeset
|
4374 |
|
7d585263808b
new test: test_queries_hierarchy
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
187
diff
changeset
|
4375 j = DoPost(_REMOTE, '/queries/%s/answers/0/query-instances' % patient, |
|
7d585263808b
new test: test_queries_hierarchy
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
187
diff
changeset
|
4376 { 'Query' : tags }) ['ID'] |
|
7d585263808b
new test: test_queries_hierarchy
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
187
diff
changeset
|
4377 self.assertEqual(DoGet(_REMOTE, '/queries/%s/answers?expand&simplify' % j), |
|
7d585263808b
new test: test_queries_hierarchy
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
187
diff
changeset
|
4378 DoGet(_REMOTE, '/queries/%s/answers?expand&simplify' % instance)) |
|
7d585263808b
new test: test_queries_hierarchy
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
187
diff
changeset
|
4379 |
|
7d585263808b
new test: test_queries_hierarchy
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
187
diff
changeset
|
4380 j = DoPost(_REMOTE, '/queries/%s/answers/0/query-series' % study, |
|
7d585263808b
new test: test_queries_hierarchy
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
187
diff
changeset
|
4381 { 'Query' : tags }) ['ID'] |
|
7d585263808b
new test: test_queries_hierarchy
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
187
diff
changeset
|
4382 self.assertEqual(DoGet(_REMOTE, '/queries/%s/answers?expand&simplify' % j), |
|
7d585263808b
new test: test_queries_hierarchy
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
187
diff
changeset
|
4383 DoGet(_REMOTE, '/queries/%s/answers?expand&simplify' % series)) |
|
7d585263808b
new test: test_queries_hierarchy
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
187
diff
changeset
|
4384 |
|
7d585263808b
new test: test_queries_hierarchy
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
187
diff
changeset
|
4385 j = DoPost(_REMOTE, '/queries/%s/answers/0/query-instances' % study, |
|
7d585263808b
new test: test_queries_hierarchy
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
187
diff
changeset
|
4386 { 'Query' : tags }) ['ID'] |
|
7d585263808b
new test: test_queries_hierarchy
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
187
diff
changeset
|
4387 self.assertEqual(DoGet(_REMOTE, '/queries/%s/answers?expand&simplify' % j), |
|
7d585263808b
new test: test_queries_hierarchy
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
187
diff
changeset
|
4388 DoGet(_REMOTE, '/queries/%s/answers?expand&simplify' % instance)) |
|
7d585263808b
new test: test_queries_hierarchy
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
187
diff
changeset
|
4389 |
|
7d585263808b
new test: test_queries_hierarchy
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
187
diff
changeset
|
4390 j = DoPost(_REMOTE, '/queries/%s/answers/0/query-instances' % series, |
|
7d585263808b
new test: test_queries_hierarchy
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
187
diff
changeset
|
4391 { 'Query' : tags }) ['ID'] |
|
7d585263808b
new test: test_queries_hierarchy
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
187
diff
changeset
|
4392 self.assertEqual(DoGet(_REMOTE, '/queries/%s/answers?expand&simplify' % j), |
|
7d585263808b
new test: test_queries_hierarchy
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
187
diff
changeset
|
4393 DoGet(_REMOTE, '/queries/%s/answers?expand&simplify' % instance)) |
|
7d585263808b
new test: test_queries_hierarchy
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
187
diff
changeset
|
4394 |
|
7d585263808b
new test: test_queries_hierarchy
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
187
diff
changeset
|
4395 |
|
189
11719f19bd62
test_dicom_disk_size
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
188
diff
changeset
|
4396 def test_dicom_disk_size(self): |
|
11719f19bd62
test_dicom_disk_size
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
188
diff
changeset
|
4397 dicomSize = 0 |
|
11719f19bd62
test_dicom_disk_size
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
188
diff
changeset
|
4398 |
|
11719f19bd62
test_dicom_disk_size
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
188
diff
changeset
|
4399 UploadInstance(_REMOTE, 'Brainix/Flair/IM-0001-0001.dcm') |
|
11719f19bd62
test_dicom_disk_size
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
188
diff
changeset
|
4400 |
|
11719f19bd62
test_dicom_disk_size
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
188
diff
changeset
|
4401 for i in range(2): |
|
11719f19bd62
test_dicom_disk_size
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
188
diff
changeset
|
4402 p = 'Knee/T%d/IM-0001-0001.dcm' % (i + 1) |
|
11719f19bd62
test_dicom_disk_size
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
188
diff
changeset
|
4403 UploadInstance(_REMOTE, p) |
|
11719f19bd62
test_dicom_disk_size
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
188
diff
changeset
|
4404 dicomSize += os.path.getsize(GetDatabasePath(p)) |
|
11719f19bd62
test_dicom_disk_size
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
188
diff
changeset
|
4405 |
|
11719f19bd62
test_dicom_disk_size
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
188
diff
changeset
|
4406 s = DoGet(_REMOTE, '/patients/ca29faea-b6a0e17f-067743a1-8b778011-a48b2a17/statistics') # Consider Knee patient |
|
11719f19bd62
test_dicom_disk_size
Sebastien Jodogne <s.jodogne@gmail.com>
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diff
changeset
|
4407 self.assertEqual(2, s['CountInstances']) |
|
11719f19bd62
test_dicom_disk_size
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
188
diff
changeset
|
4408 self.assertEqual(2, s['CountSeries']) |
|
11719f19bd62
test_dicom_disk_size
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
188
diff
changeset
|
4409 self.assertEqual(1, s['CountStudies']) |
|
11719f19bd62
test_dicom_disk_size
Sebastien Jodogne <s.jodogne@gmail.com>
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188
diff
changeset
|
4410 self.assertEqual(dicomSize, int(s['DicomDiskSize'])) |
|
11719f19bd62
test_dicom_disk_size
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diff
changeset
|
4411 self.assertEqual(dicomSize, int(s['DicomUncompressedSize'])) |
|
11719f19bd62
test_dicom_disk_size
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diff
changeset
|
4412 self.assertLess(dicomSize, int(s['UncompressedSize'])) |
|
11719f19bd62
test_dicom_disk_size
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diff
changeset
|
4413 self.assertEqual(s['UncompressedSize'], s['DiskSize']) |
|
11719f19bd62
test_dicom_disk_size
Sebastien Jodogne <s.jodogne@gmail.com>
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diff
changeset
|
4414 |
|
202
f26f9ae9c599
test_changes_2 and test_bitbucket_issue_124
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parents:
195
diff
changeset
|
4415 |
|
f26f9ae9c599
test_changes_2 and test_bitbucket_issue_124
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
195
diff
changeset
|
4416 def test_changes_2(self): |
|
f26f9ae9c599
test_changes_2 and test_bitbucket_issue_124
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diff
changeset
|
4417 # More consistent behavior since Orthanc 1.5.2 |
|
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test_changes_2 and test_bitbucket_issue_124
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diff
changeset
|
4418 # https://groups.google.com/d/msg/orthanc-users/QhzB6vxYeZ0/YxabgqpfBAAJ |
|
f26f9ae9c599
test_changes_2 and test_bitbucket_issue_124
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195
diff
changeset
|
4419 |
|
f26f9ae9c599
test_changes_2 and test_bitbucket_issue_124
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diff
changeset
|
4420 # Make sure that this is not the first change |
|
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test_changes_2 and test_bitbucket_issue_124
Sebastien Jodogne <s.jodogne@gmail.com>
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diff
changeset
|
4421 self.assertEqual(0, len(DoGet(_REMOTE, '/instances'))) |
|
f26f9ae9c599
test_changes_2 and test_bitbucket_issue_124
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diff
changeset
|
4422 a = UploadInstance(_REMOTE, 'DummyCT.dcm')['ID'] |
|
f26f9ae9c599
test_changes_2 and test_bitbucket_issue_124
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diff
changeset
|
4423 self.assertEqual(1, len(DoGet(_REMOTE, '/instances'))) |
|
f26f9ae9c599
test_changes_2 and test_bitbucket_issue_124
Sebastien Jodogne <s.jodogne@gmail.com>
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diff
changeset
|
4424 DoDelete(_REMOTE, '/instances/%s' % a) |
|
f26f9ae9c599
test_changes_2 and test_bitbucket_issue_124
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
195
diff
changeset
|
4425 |
|
f26f9ae9c599
test_changes_2 and test_bitbucket_issue_124
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
195
diff
changeset
|
4426 # No more instance, but there were previous changes |
|
f26f9ae9c599
test_changes_2 and test_bitbucket_issue_124
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
195
diff
changeset
|
4427 self.assertEqual(0, len(DoGet(_REMOTE, '/instances'))) |
|
f26f9ae9c599
test_changes_2 and test_bitbucket_issue_124
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
195
diff
changeset
|
4428 |
|
f26f9ae9c599
test_changes_2 and test_bitbucket_issue_124
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
195
diff
changeset
|
4429 c = DoGet(_REMOTE, '/changes') |
|
f26f9ae9c599
test_changes_2 and test_bitbucket_issue_124
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
195
diff
changeset
|
4430 self.assertEqual(0, len(c['Changes'])) |
|
f26f9ae9c599
test_changes_2 and test_bitbucket_issue_124
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
195
diff
changeset
|
4431 self.assertTrue(c['Done']) |
|
f26f9ae9c599
test_changes_2 and test_bitbucket_issue_124
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
195
diff
changeset
|
4432 seq = c['Last'] |
|
f26f9ae9c599
test_changes_2 and test_bitbucket_issue_124
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
195
diff
changeset
|
4433 |
|
f26f9ae9c599
test_changes_2 and test_bitbucket_issue_124
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
195
diff
changeset
|
4434 c = DoGet(_REMOTE, '/changes?last') |
|
f26f9ae9c599
test_changes_2 and test_bitbucket_issue_124
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
195
diff
changeset
|
4435 self.assertEqual(0, len(c['Changes'])) |
|
f26f9ae9c599
test_changes_2 and test_bitbucket_issue_124
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
195
diff
changeset
|
4436 self.assertTrue(c['Done']) |
|
f26f9ae9c599
test_changes_2 and test_bitbucket_issue_124
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
195
diff
changeset
|
4437 self.assertEqual(seq, c['Last']) |
|
f26f9ae9c599
test_changes_2 and test_bitbucket_issue_124
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
195
diff
changeset
|
4438 |
|
f26f9ae9c599
test_changes_2 and test_bitbucket_issue_124
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
195
diff
changeset
|
4439 c = DoGet(_REMOTE, '/changes?since=%d' % (seq + 1000)) |
|
f26f9ae9c599
test_changes_2 and test_bitbucket_issue_124
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
195
diff
changeset
|
4440 self.assertEqual(0, len(c['Changes'])) |
|
f26f9ae9c599
test_changes_2 and test_bitbucket_issue_124
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
195
diff
changeset
|
4441 self.assertTrue(c['Done']) |
|
f26f9ae9c599
test_changes_2 and test_bitbucket_issue_124
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
195
diff
changeset
|
4442 self.assertEqual(seq, c['Last']) |
|
f26f9ae9c599
test_changes_2 and test_bitbucket_issue_124
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
195
diff
changeset
|
4443 |
|
f26f9ae9c599
test_changes_2 and test_bitbucket_issue_124
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
195
diff
changeset
|
4444 # Add one instance |
|
f26f9ae9c599
test_changes_2 and test_bitbucket_issue_124
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
195
diff
changeset
|
4445 UploadInstance(_REMOTE, 'DummyCT.dcm') |
|
f26f9ae9c599
test_changes_2 and test_bitbucket_issue_124
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
195
diff
changeset
|
4446 self.assertEqual(1, len(DoGet(_REMOTE, '/instances'))) |
|
f26f9ae9c599
test_changes_2 and test_bitbucket_issue_124
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
195
diff
changeset
|
4447 |
|
f26f9ae9c599
test_changes_2 and test_bitbucket_issue_124
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
195
diff
changeset
|
4448 c = DoGet(_REMOTE, '/changes') |
|
f26f9ae9c599
test_changes_2 and test_bitbucket_issue_124
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
195
diff
changeset
|
4449 self.assertEqual(4, len(c['Changes'])) |
|
f26f9ae9c599
test_changes_2 and test_bitbucket_issue_124
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
195
diff
changeset
|
4450 self.assertTrue(c['Done']) |
|
f26f9ae9c599
test_changes_2 and test_bitbucket_issue_124
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
195
diff
changeset
|
4451 self.assertEqual(seq + 4, c['Last']) |
|
f26f9ae9c599
test_changes_2 and test_bitbucket_issue_124
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
195
diff
changeset
|
4452 |
|
f26f9ae9c599
test_changes_2 and test_bitbucket_issue_124
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
195
diff
changeset
|
4453 c = DoGet(_REMOTE, '/changes?last') |
|
f26f9ae9c599
test_changes_2 and test_bitbucket_issue_124
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
195
diff
changeset
|
4454 self.assertEqual(1, len(c['Changes'])) |
|
f26f9ae9c599
test_changes_2 and test_bitbucket_issue_124
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
195
diff
changeset
|
4455 self.assertTrue(c['Done']) |
|
f26f9ae9c599
test_changes_2 and test_bitbucket_issue_124
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
195
diff
changeset
|
4456 self.assertEqual(seq + 4, c['Last']) |
|
f26f9ae9c599
test_changes_2 and test_bitbucket_issue_124
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
195
diff
changeset
|
4457 |
|
f26f9ae9c599
test_changes_2 and test_bitbucket_issue_124
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
195
diff
changeset
|
4458 c = DoGet(_REMOTE, '/changes?since=%d' % (seq + 1000)) |
|
f26f9ae9c599
test_changes_2 and test_bitbucket_issue_124
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
195
diff
changeset
|
4459 self.assertEqual(0, len(c['Changes'])) |
|
f26f9ae9c599
test_changes_2 and test_bitbucket_issue_124
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
195
diff
changeset
|
4460 self.assertTrue(c['Done']) |
|
f26f9ae9c599
test_changes_2 and test_bitbucket_issue_124
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
195
diff
changeset
|
4461 self.assertEqual(seq + 4, c['Last']) |
|
f26f9ae9c599
test_changes_2 and test_bitbucket_issue_124
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
195
diff
changeset
|
4462 |
|
f26f9ae9c599
test_changes_2 and test_bitbucket_issue_124
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
195
diff
changeset
|
4463 # Remove the uploaded instance |
|
f26f9ae9c599
test_changes_2 and test_bitbucket_issue_124
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
195
diff
changeset
|
4464 DoDelete(_REMOTE, '/instances/%s' % a) |
|
f26f9ae9c599
test_changes_2 and test_bitbucket_issue_124
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
195
diff
changeset
|
4465 self.assertEqual(0, len(DoGet(_REMOTE, '/instances'))) |
|
f26f9ae9c599
test_changes_2 and test_bitbucket_issue_124
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
195
diff
changeset
|
4466 |
|
f26f9ae9c599
test_changes_2 and test_bitbucket_issue_124
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
195
diff
changeset
|
4467 c = DoGet(_REMOTE, '/changes') |
|
f26f9ae9c599
test_changes_2 and test_bitbucket_issue_124
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
195
diff
changeset
|
4468 self.assertEqual(0, len(c['Changes'])) |
|
f26f9ae9c599
test_changes_2 and test_bitbucket_issue_124
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
195
diff
changeset
|
4469 self.assertTrue(c['Done']) |
|
f26f9ae9c599
test_changes_2 and test_bitbucket_issue_124
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
195
diff
changeset
|
4470 self.assertEqual(seq + 4, c['Last']) |
|
f26f9ae9c599
test_changes_2 and test_bitbucket_issue_124
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
195
diff
changeset
|
4471 |
|
f26f9ae9c599
test_changes_2 and test_bitbucket_issue_124
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
195
diff
changeset
|
4472 c = DoGet(_REMOTE, '/changes?last') |
|
f26f9ae9c599
test_changes_2 and test_bitbucket_issue_124
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
195
diff
changeset
|
4473 self.assertEqual(0, len(c['Changes'])) |
|
f26f9ae9c599
test_changes_2 and test_bitbucket_issue_124
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
195
diff
changeset
|
4474 self.assertTrue(c['Done']) |
|
f26f9ae9c599
test_changes_2 and test_bitbucket_issue_124
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
195
diff
changeset
|
4475 self.assertEqual(seq + 4, c['Last']) |
|
f26f9ae9c599
test_changes_2 and test_bitbucket_issue_124
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
195
diff
changeset
|
4476 |
|
f26f9ae9c599
test_changes_2 and test_bitbucket_issue_124
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
195
diff
changeset
|
4477 c = DoGet(_REMOTE, '/changes?since=%d' % (seq + 1000)) |
|
f26f9ae9c599
test_changes_2 and test_bitbucket_issue_124
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
195
diff
changeset
|
4478 self.assertEqual(0, len(c['Changes'])) |
|
f26f9ae9c599
test_changes_2 and test_bitbucket_issue_124
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
195
diff
changeset
|
4479 self.assertTrue(c['Done']) |
|
f26f9ae9c599
test_changes_2 and test_bitbucket_issue_124
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
195
diff
changeset
|
4480 self.assertEqual(seq + 4, c['Last']) |
|
f26f9ae9c599
test_changes_2 and test_bitbucket_issue_124
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
195
diff
changeset
|
4481 |
|
f26f9ae9c599
test_changes_2 and test_bitbucket_issue_124
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
195
diff
changeset
|
4482 |
|
f26f9ae9c599
test_changes_2 and test_bitbucket_issue_124
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
195
diff
changeset
|
4483 def test_bitbucket_issue_124(self): |
|
f26f9ae9c599
test_changes_2 and test_bitbucket_issue_124
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
195
diff
changeset
|
4484 a = UploadInstance(_REMOTE, 'Issue124.dcm')['ID'] |
|
f26f9ae9c599
test_changes_2 and test_bitbucket_issue_124
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
195
diff
changeset
|
4485 |
|
f26f9ae9c599
test_changes_2 and test_bitbucket_issue_124
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
195
diff
changeset
|
4486 z = GetArchive(_REMOTE, '/patients/%s/media' % a) |
|
f26f9ae9c599
test_changes_2 and test_bitbucket_issue_124
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
195
diff
changeset
|
4487 self.assertEqual(2, len(z.namelist())) |
|
207
a515eec74078
test_invalid_findscp
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
202
diff
changeset
|
4488 |
|
a515eec74078
test_invalid_findscp
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
202
diff
changeset
|
4489 |
|
a515eec74078
test_invalid_findscp
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
202
diff
changeset
|
4490 def test_invalid_findscp(self): |
|
a515eec74078
test_invalid_findscp
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
202
diff
changeset
|
4491 UploadInstance(_REMOTE, 'DummyCT.dcm') |
|
a515eec74078
test_invalid_findscp
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
202
diff
changeset
|
4492 findscu = CallFindScu([ '-S', '-k', '8,52=IMAGE', '-k', '8,16', '-k', '2,2' ]) |
|
a515eec74078
test_invalid_findscp
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
202
diff
changeset
|
4493 self.assertEqual(0, len(re.findall('\(0002,0002\)', findscu))) |
|
208
2444c9a7c422
test_bitbucket_issue_90
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
207
diff
changeset
|
4494 |
|
2444c9a7c422
test_bitbucket_issue_90
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
207
diff
changeset
|
4495 |
|
2444c9a7c422
test_bitbucket_issue_90
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
207
diff
changeset
|
4496 def test_bitbucket_issue_90(self): |
|
2444c9a7c422
test_bitbucket_issue_90
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
207
diff
changeset
|
4497 def CountDicomResults(sex): |
|
2444c9a7c422
test_bitbucket_issue_90
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
207
diff
changeset
|
4498 a = CallFindScu([ '-S', '-k', '8,52=STUDY', '-k', sex ]) |
|
2444c9a7c422
test_bitbucket_issue_90
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
207
diff
changeset
|
4499 return len(re.findall('\(0010,0040\)', a)) |
|
2444c9a7c422
test_bitbucket_issue_90
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
207
diff
changeset
|
4500 |
|
2444c9a7c422
test_bitbucket_issue_90
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
207
diff
changeset
|
4501 def CountRestResults(sex): |
|
2444c9a7c422
test_bitbucket_issue_90
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
207
diff
changeset
|
4502 a = DoPost(_REMOTE, '/tools/find', |
|
2444c9a7c422
test_bitbucket_issue_90
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
207
diff
changeset
|
4503 { 'Level' : 'Study', 'Query' : { 'PatientSex' : sex } }) |
|
2444c9a7c422
test_bitbucket_issue_90
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
207
diff
changeset
|
4504 return len(a) |
|
2444c9a7c422
test_bitbucket_issue_90
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
207
diff
changeset
|
4505 |
|
2444c9a7c422
test_bitbucket_issue_90
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
207
diff
changeset
|
4506 # Just like the "CR000000.dcm" of the issue, the test image |
|
2444c9a7c422
test_bitbucket_issue_90
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207
diff
changeset
|
4507 # "DummyCT.dcm" has the tag PatientSex (0010,0040) unset |
|
2444c9a7c422
test_bitbucket_issue_90
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parents:
207
diff
changeset
|
4508 UploadInstance(_REMOTE, 'DummyCT.dcm') |
|
2444c9a7c422
test_bitbucket_issue_90
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
207
diff
changeset
|
4509 |
|
2444c9a7c422
test_bitbucket_issue_90
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
207
diff
changeset
|
4510 # Test that the behavior of DICOM vs. REST API is consistent on missing tags |
|
2444c9a7c422
test_bitbucket_issue_90
Sebastien Jodogne <s.jodogne@gmail.com>
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diff
changeset
|
4511 |
|
2444c9a7c422
test_bitbucket_issue_90
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
207
diff
changeset
|
4512 # In wildcard constraints, the patient sex must be set for a match to occur |
|
2444c9a7c422
test_bitbucket_issue_90
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
207
diff
changeset
|
4513 self.assertEqual(0, CountDicomResults('PatientSex=*')) |
|
2444c9a7c422
test_bitbucket_issue_90
Sebastien Jodogne <s.jodogne@gmail.com>
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207
diff
changeset
|
4514 self.assertEqual(0, CountRestResults('*')) |
|
2444c9a7c422
test_bitbucket_issue_90
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
207
diff
changeset
|
4515 |
|
2444c9a7c422
test_bitbucket_issue_90
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
207
diff
changeset
|
4516 # In single-valued constraints, the patient sex must be set |
|
2444c9a7c422
test_bitbucket_issue_90
Sebastien Jodogne <s.jodogne@gmail.com>
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diff
changeset
|
4517 self.assertEqual(0, CountDicomResults('PatientSex=F')) |
|
2444c9a7c422
test_bitbucket_issue_90
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
207
diff
changeset
|
4518 self.assertEqual(0, CountDicomResults('PatientSex=M')) |
|
2444c9a7c422
test_bitbucket_issue_90
Sebastien Jodogne <s.jodogne@gmail.com>
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207
diff
changeset
|
4519 self.assertEqual(0, CountRestResults('F')) |
|
2444c9a7c422
test_bitbucket_issue_90
Sebastien Jodogne <s.jodogne@gmail.com>
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diff
changeset
|
4520 self.assertEqual(0, CountRestResults('M')) |
|
2444c9a7c422
test_bitbucket_issue_90
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
207
diff
changeset
|
4521 |
|
2444c9a7c422
test_bitbucket_issue_90
Sebastien Jodogne <s.jodogne@gmail.com>
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207
diff
changeset
|
4522 # Empty constraints are only used to ask the actual value of |
|
2444c9a7c422
test_bitbucket_issue_90
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207
diff
changeset
|
4523 # the tag to be added to the *answer*. The tag should not used |
|
2444c9a7c422
test_bitbucket_issue_90
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diff
changeset
|
4524 # as a filter in such a situation. |
|
2444c9a7c422
test_bitbucket_issue_90
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
207
diff
changeset
|
4525 self.assertEqual(1, CountDicomResults('PatientSex')) |
|
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4526 self.assertEqual(1, CountDicomResults('PatientSex=')) |
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4527 self.assertEqual(1, CountRestResults('')) # This check fails on Orthanc <= 1.5.2 (issue 90) |
|
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4528 |
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4529 |
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4530 def test_rest_modalities_in_study(self): |
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4531 # Tests a regression that is present in Orthanc 1.5.2 and 1.5.3 |
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4532 # https://groups.google.com/d/msg/orthanc-users/7lZyG3wpx-M/uOXzAzVCFwAJ |
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4533 UploadInstance(_REMOTE, 'ColorTestImageJ.dcm') |
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4534 |
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4535 a = DoPost(_REMOTE, '/tools/find', { 'Level' : 'Study', |
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4536 'Query' : { 'ModalitiesInStudy' : 'US' }}) |
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4537 self.assertEqual(0, len(a)) |
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4538 |
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4539 a = DoPost(_REMOTE, '/tools/find', { 'Level' : 'Study', |
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4540 'Query' : { 'ModalitiesInStudy' : 'US\\CT' }}) |
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4541 self.assertEqual(1, len(a)) |
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4542 |
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4543 a = DoPost(_REMOTE, '/tools/find', { 'Level' : 'Study', |
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4544 'Query' : { 'ModalitiesInStudy' : 'CT' }}) |
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4545 self.assertEqual(1, len(a)) |
| 211 | 4546 |
| 4547 | |
| 4548 def test_series_status(self): | |
| 4549 def HasCompletedInChanges(): | |
| 4550 for c in DoGet(_REMOTE, '/changes?limit=1000&since=0')['Changes']: | |
| 4551 if c['ChangeType'] == 'CompletedSeries': | |
| 4552 return True; | |
| 4553 | |
| 4554 return False | |
| 4555 | |
| 4556 UploadInstance(_REMOTE, 'Knix/Loc/IM-0001-0001.dcm') | |
| 4557 series = '8ea120d7-5057d919-837dfbcc-ccd04e0f-7f3a94aa' | |
| 4558 self.assertEqual('Unknown', DoGet(_REMOTE, '/series/%s' % series)['Status']) | |
| 4559 self.assertFalse(HasCompletedInChanges()) | |
| 4560 | |
| 4561 series = 'ce25ecb6-ed79d004-5ae43ca7-3fc89bc5-67511614' | |
| 4562 | |
| 4563 for i in range(3): | |
| 4564 UploadInstance(_REMOTE, 'Series/Lena-%d.dcm' % (i + 1)) | |
| 4565 self.assertEqual('Missing', DoGet(_REMOTE, '/series/%s' % series)['Status']) | |
| 4566 self.assertFalse(HasCompletedInChanges()) | |
| 4567 | |
| 4568 UploadInstance(_REMOTE, 'Series/Lena-4.dcm') | |
| 4569 self.assertEqual('Complete', DoGet(_REMOTE, '/series/%s' % series)['Status']) | |
| 4570 self.assertTrue(HasCompletedInChanges()) | |
| 4571 | |
| 4572 DoDelete(_REMOTE, '/changes') | |
| 4573 self.assertFalse(HasCompletedInChanges()) | |
| 4574 | |
| 4575 UploadInstance(_REMOTE, 'Series/Lena-5.dcm') | |
| 4576 self.assertEqual('Inconsistent', DoGet(_REMOTE, '/series/%s' % series)['Status']) | |
| 4577 self.assertFalse(HasCompletedInChanges()) | |
| 4578 | |
| 215 | 4579 |
| 4580 def test_dicomweb(self): | |
| 4581 def Compare(dicom, reference): | |
| 4582 a = UploadInstance(_REMOTE, dicom) ['ID'] | |
| 4583 b = DoGet(_REMOTE, '/instances/%s/file' % a, | |
| 4584 headers = { 'Accept' : 'application/dicom+json' }) | |
| 4585 with open(GetDatabasePath(reference), 'rb') as c: | |
| 4586 d = json.load(c) | |
| 220 | 4587 AssertAlmostEqualRecursive(self, d, b) |
| 215 | 4588 |
| 4589 Compare('DummyCT.dcm', 'DummyCT.json') | |
| 4590 Compare('MarekLatin2.dcm', 'MarekLatin2.json') | |
| 4591 Compare('HierarchicalAnonymization/StructuredReports/IM0', | |
| 4592 'HierarchicalAnonymization/StructuredReports/IM0.json') | |
| 217 | 4593 |
| 4594 | |
| 4595 def test_issue_95_encodings(self): | |
| 319 | 4596 # https://bugs.orthanc-server.com/show_bug.cgi?id=95 |
| 217 | 4597 # Check out image: "../Database/Encodings/DavidClunie/charsettests.screenshot.png" |
| 4598 | |
| 4599 # Very useful tool: "file2" from package "file-kanji" | |
| 4600 | |
| 4601 def GetPatientName(dicom): | |
| 4602 i = UploadInstance(_REMOTE, dicom) ['ID'] | |
| 4603 j = DoGet(_REMOTE, '/instances/%s/tags?simplify' % i) | |
| 4604 return j['PatientName'] | |
| 4605 | |
| 4606 def ComparePatientName(name, dicom): | |
| 4607 self.assertEqual(name, GetPatientName(dicom)) | |
| 4608 | |
| 4609 # gdcmraw -t 10,10 -i SCSFREN -o /tmp/tag && uconv -f ISO-IR-100 -t UTF-8 /tmp/tag && echo | |
| 4610 ComparePatientName(u'Buc^Jérôme', 'Encodings/DavidClunie/SCSFREN') | |
| 4611 | |
| 4612 # gdcmraw -t 10,10 -i SCSI2 -o /tmp/tag && uconv -f KOREAN -t UTF-8 /tmp/tag && echo | |
| 4613 ComparePatientName(u'Hong^Gildong=洪^吉洞=홍^길동', 'Encodings/DavidClunie/SCSI2') # Since Orthanc 1.5.5 | |
| 4614 | |
| 4615 # gdcmraw -t 10,10 -i SCSX2 -o /tmp/tag && uconv -f GB18030 -t UTF-8 /tmp/tag && echo | |
| 4616 ComparePatientName(u'Wang^XiaoDong=王^小东=', 'Encodings/DavidClunie/SCSX2') | |
| 4617 | |
| 4618 # gdcmraw -t 10,10 -i SCSX1 -o /tmp/tag && cat /tmp/tag && echo | |
| 4619 ComparePatientName(u'Wang^XiaoDong=王^小東=', 'Encodings/DavidClunie/SCSX1') | |
| 4620 | |
| 4621 # gdcmraw -t 10,10 -i SCSH31 -o /tmp/tag && uconv -f JIS -t UTF-8 /tmp/tag && echo | |
| 4622 ComparePatientName(u'Yamada^Tarou=山田^太郎=やまだ^たろう', 'Encodings/DavidClunie/SCSH31') | |
| 4623 | |
| 4624 # gdcmraw -t 10,10 -i SCSGERM -o /tmp/tag && uconv -f ISO-IR-100 -t UTF-8 /tmp/tag && echo | |
| 4625 ComparePatientName(u'Äneas^Rüdiger', 'Encodings/DavidClunie/SCSGERM') | |
| 4626 | |
| 4627 # gdcmraw -t 10,10 -i SCSGREEK -o /tmp/tag && uconv -f ISO-IR-126 -t UTF-8 /tmp/tag && echo | |
| 4628 ComparePatientName(u'Διονυσιος', 'Encodings/DavidClunie/SCSGREEK') | |
| 4629 | |
| 4630 # gdcmraw -t 10,10 -i SCSRUSS -o /tmp/tag && uconv -f ISO-IR-144 -t UTF-8 /tmp/tag && echo | |
| 4631 ComparePatientName(u'Люкceмбypг', 'Encodings/DavidClunie/SCSRUSS') | |
| 4632 | |
| 4633 # gdcmraw -t 10,10 -i SCSHBRW -o /tmp/tag && uconv -f ISO-IR-138 -t UTF-8 /tmp/tag && echo | |
| 4634 # NB: Hebrew is a right-to-left encoding, copying/pasting from | |
| 4635 # Linux console into Emacs automatically reverse the string | |
| 4636 ComparePatientName(u'שרון^דבורה', 'Encodings/DavidClunie/SCSHBRW') | |
| 4637 | |
| 4638 # gdcmraw -t 10,10 -i SCSARAB -o /tmp/tag && uconv -f ISO-IR-127 -t UTF-8 /tmp/tag && echo | |
| 4639 # NB: Right-to-left as for Hebrew (SCSHBRW), and the Ubuntu console can't display such | |
| 4640 # characters by default, but copy/paste works with Emacs | |
| 4641 ComparePatientName(u'قباني^لنزار', 'Encodings/DavidClunie/SCSARAB') | |
| 4642 | |
| 4643 # SCSH32: This SpecificCharacterSet is composed of 2 | |
| 4644 # codepages: "ISO 2022 IR 13" (i.e. "SHIFT_JIS") until the | |
| 4645 # first equal, then "ISO 2022 IR 87" (i.e. "JIS") for the | |
| 4646 # remainer. Orthanc only takes into consideration the first | |
| 4647 # codepage: This is a limitation. | |
| 4648 # gdcmraw -t 10,10 -i SCSH32 -o /tmp/tag && cut -d '=' -f 1 /tmp/tag | uconv -f SHIFT_JIS -t UTF-8 | |
| 4649 self.assertTrue(GetPatientName('Encodings/DavidClunie/SCSH32').startswith(u'ﾔﾏﾀﾞ^ﾀﾛｳ=')) | |
|
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4650 |
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4651 |
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4652 def test_findscu_missing_tags(self): |
|
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|
4653 # dcmodify -e Rows DummyCTInvalidRows.dcm -gst -gse -gin |
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4654 UploadInstance(_REMOTE, 'DummyCT.dcm') |
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|
4655 UploadInstance(_REMOTE, 'DummyCTInvalidRows.dcm') |
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|
4656 |
|
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diff
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|
4657 i = CallFindScu([ '-k', '0008,0052=IMAGES', '-k', 'Rows', '-k', 'PatientName' ]) |
|
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4658 |
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|
4659 # We have 2 instances... |
|
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diff
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|
4660 patientNames = re.findall('\(0010,0010\).*?\[(.*?)\]', i) |
|
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|
4661 self.assertEqual(2, len(patientNames)) |
|
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|
4662 self.assertEqual('KNIX', patientNames[0]) |
|
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|
4663 self.assertEqual('KNIX', patientNames[1]) |
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4664 |
|
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diff
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|
4665 # ...but only 1 value for the "Rows" tag |
|
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|
4666 rows = re.findall('\(0028,0010\) US ([0-9]+)', i) |
|
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|
4667 self.assertEqual(1, len(rows)) |
|
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|
4668 self.assertEqual('512', rows[0]) |
|
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|
4669 |
|
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|
4670 |
|
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|
4671 |
|
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|
4672 def test_bitbucket_issue_131(self): |
|
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|
4673 # "Orthanc PACS silently fails to C-MOVE due to duplicate |
|
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|
4674 # StudyInstanceUID in it's database." |
| 319 | 4675 # https://bugs.orthanc-server.com/show_bug.cgi?id=131 |
|
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|
4676 |
|
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diff
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|
4677 # Insert 2 instances, with the same StudyInstanceUID, but with |
|
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|
4678 # different patient IDs. Orthanc will create 2 distincts |
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|
4679 # patients, and the hierarchy of resources above the two |
|
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|
4680 # instances will be fully disjoint. |
|
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|
4681 UploadInstance(_REMOTE, 'PatientIdsCollision/Issue131-a.dcm') |
|
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|
4682 UploadInstance(_REMOTE, 'PatientIdsCollision/Issue131-b.dcm') |
|
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4683 |
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|
4684 self.assertEqual(2, len(DoGet(_REMOTE, '/patients'))) |
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4685 self.assertEqual(2, len(DoGet(_REMOTE, '/studies'))) |
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4686 |
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|
4687 a = DoPost(_REMOTE, '/modalities/self/query', { |
|
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4688 'Level' : 'Study', |
|
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|
4689 'Query' : {"PatientID": "A" }})['ID'] |
|
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4690 |
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|
4691 # 1 study is matched |
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4692 self.assertEqual(1, len(DoGet(_REMOTE, '/queries/%s/answers' % a))) |
|
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|
4693 |
|
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|
4694 self.assertEqual(0, len(DoGet(_LOCAL, '/instances'))) |
| 220 | 4695 WaitAllNewJobsDone(_REMOTE, lambda: DoPost |
| 4696 (_REMOTE, '/queries/%s/retrieve' % a, | |
| 4697 '{"TargetAet":"ORTHANCTEST","Synchronous":false}')) | |
|
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|
4698 |
|
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|
4699 # The two studies are matched, as we made the request at the |
|
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|
4700 # Study level, thus the shared StudyInstanceUID is used as the key |
|
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|
4701 self.assertEqual(2, len(DoGet(_LOCAL, '/instances'))) |
|
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|
4702 |
|
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|
4703 |
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|
4704 # Match the 2 studies |
|
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test_bitbucket_issue_131
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diff
changeset
|
4705 a = DoPost(_REMOTE, '/modalities/self/query', { |
|
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test_bitbucket_issue_131
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218
diff
changeset
|
4706 'Level' : 'Study', |
|
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test_bitbucket_issue_131
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diff
changeset
|
4707 'Query' : {"StudyInstanceUID": "2.25.123" }})['ID'] |
|
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test_bitbucket_issue_131
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218
diff
changeset
|
4708 self.assertEqual(2, len(DoGet(_REMOTE, '/queries/%s/answers' % a))) |
|
00e5aeea33dd
test_bitbucket_issue_131
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parents:
218
diff
changeset
|
4709 DropOrthanc(_LOCAL) |
|
00e5aeea33dd
test_bitbucket_issue_131
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parents:
218
diff
changeset
|
4710 self.assertEqual(0, len(DoGet(_LOCAL, '/instances'))) |
| 220 | 4711 WaitAllNewJobsDone(_REMOTE, lambda: DoPost |
| 4712 (_REMOTE, '/queries/%s/retrieve' % a, | |
| 4713 '{"TargetAet":"ORTHANCTEST","Synchronous":false}')) | |
|
219
00e5aeea33dd
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parents:
218
diff
changeset
|
4714 self.assertEqual(2, len(DoGet(_LOCAL, '/instances'))) |
|
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test_bitbucket_issue_131
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218
diff
changeset
|
4715 |
|
00e5aeea33dd
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218
diff
changeset
|
4716 |
|
00e5aeea33dd
test_bitbucket_issue_131
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parents:
218
diff
changeset
|
4717 # Same test, at the patient level => only 1 instance is transfered |
|
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parents:
218
diff
changeset
|
4718 a = DoPost(_REMOTE, '/modalities/self/query', { |
|
00e5aeea33dd
test_bitbucket_issue_131
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parents:
218
diff
changeset
|
4719 'Level' : 'Patient', |
|
00e5aeea33dd
test_bitbucket_issue_131
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parents:
218
diff
changeset
|
4720 'Query' : {"PatientID": "A" }})['ID'] |
|
00e5aeea33dd
test_bitbucket_issue_131
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
218
diff
changeset
|
4721 self.assertEqual(1, len(DoGet(_REMOTE, '/queries/%s/answers' % a))) |
|
00e5aeea33dd
test_bitbucket_issue_131
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parents:
218
diff
changeset
|
4722 DropOrthanc(_LOCAL) |
|
00e5aeea33dd
test_bitbucket_issue_131
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parents:
218
diff
changeset
|
4723 self.assertEqual(0, len(DoGet(_LOCAL, '/instances'))) |
| 220 | 4724 WaitAllNewJobsDone(_REMOTE, lambda: DoPost |
| 4725 (_REMOTE, '/queries/%s/retrieve' % a, | |
| 4726 '{"TargetAet":"ORTHANCTEST","Synchronous":false}')) | |
|
219
00e5aeea33dd
test_bitbucket_issue_131
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
218
diff
changeset
|
4727 self.assertEqual(1, len(DoGet(_LOCAL, '/instances'))) |
|
00e5aeea33dd
test_bitbucket_issue_131
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
218
diff
changeset
|
4728 |
|
00e5aeea33dd
test_bitbucket_issue_131
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
218
diff
changeset
|
4729 |
|
00e5aeea33dd
test_bitbucket_issue_131
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
218
diff
changeset
|
4730 # Same test, at the series level => only 1 instance is transfered |
|
00e5aeea33dd
test_bitbucket_issue_131
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
218
diff
changeset
|
4731 a = DoPost(_REMOTE, '/modalities/self/query', { |
|
00e5aeea33dd
test_bitbucket_issue_131
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
218
diff
changeset
|
4732 'Level' : 'Series', |
|
00e5aeea33dd
test_bitbucket_issue_131
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
218
diff
changeset
|
4733 'Query' : {"PatientID": "A" }})['ID'] |
|
00e5aeea33dd
test_bitbucket_issue_131
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
218
diff
changeset
|
4734 self.assertEqual(1, len(DoGet(_REMOTE, '/queries/%s/answers' % a))) |
|
00e5aeea33dd
test_bitbucket_issue_131
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
218
diff
changeset
|
4735 DropOrthanc(_LOCAL) |
|
00e5aeea33dd
test_bitbucket_issue_131
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
218
diff
changeset
|
4736 self.assertEqual(0, len(DoGet(_LOCAL, '/instances'))) |
| 220 | 4737 WaitAllNewJobsDone(_REMOTE, lambda: DoPost |
| 4738 (_REMOTE, '/queries/%s/retrieve' % a, | |
| 4739 '{"TargetAet":"ORTHANCTEST","Synchronous":false}')) | |
|
219
00e5aeea33dd
test_bitbucket_issue_131
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
218
diff
changeset
|
4740 self.assertEqual(1, len(DoGet(_LOCAL, '/instances'))) |
|
00e5aeea33dd
test_bitbucket_issue_131
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
218
diff
changeset
|
4741 |
|
233
ce0b19a2c807
test_bitbucket_issue_136
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
231
diff
changeset
|
4742 |
|
ce0b19a2c807
test_bitbucket_issue_136
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
231
diff
changeset
|
4743 def test_bitbucket_issue_136(self): |
|
ce0b19a2c807
test_bitbucket_issue_136
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parents:
231
diff
changeset
|
4744 UploadInstance(_REMOTE, 'Issue137.dcm') |
|
ce0b19a2c807
test_bitbucket_issue_136
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
231
diff
changeset
|
4745 i = CallFindScu([ '-k', '0008,0052=STUDY', '-k', '0010,0010', '-k', '0028,0010', '-k', '0040,0275' ]) |
|
ce0b19a2c807
test_bitbucket_issue_136
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
231
diff
changeset
|
4746 patientNames = re.findall('\(0010,0010\).*?\[(.*?)\]', i) |
|
ce0b19a2c807
test_bitbucket_issue_136
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
231
diff
changeset
|
4747 self.assertEqual(1, len(patientNames)) |
|
ce0b19a2c807
test_bitbucket_issue_136
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
231
diff
changeset
|
4748 self.assertEqual('John Doe', patientNames[0]) |
|
234
93cd4fdd4a67
test_anonymize_relationships_4
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
233
diff
changeset
|
4749 |
|
93cd4fdd4a67
test_anonymize_relationships_4
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
233
diff
changeset
|
4750 |
|
93cd4fdd4a67
test_anonymize_relationships_4
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
233
diff
changeset
|
4751 def test_anonymize_relationships_4(self): |
|
93cd4fdd4a67
test_anonymize_relationships_4
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
233
diff
changeset
|
4752 # https://groups.google.com/d/msg/orthanc-users/UkcsqyTpszE/bXUpzU0vAAAJ |
|
93cd4fdd4a67
test_anonymize_relationships_4
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
233
diff
changeset
|
4753 sr1 = UploadInstance(_REMOTE, 'HierarchicalAnonymization/2019-03-28/CR000000.dcm')['ID'] |
|
93cd4fdd4a67
test_anonymize_relationships_4
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
233
diff
changeset
|
4754 mr1 = UploadInstance(_REMOTE, 'HierarchicalAnonymization/2019-03-28/PR000000.dcm')['ID'] |
|
93cd4fdd4a67
test_anonymize_relationships_4
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
233
diff
changeset
|
4755 study = '0c923249-d52121a9-2b7167f7-6b85534f-0943697e' |
|
93cd4fdd4a67
test_anonymize_relationships_4
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
233
diff
changeset
|
4756 |
|
93cd4fdd4a67
test_anonymize_relationships_4
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
233
diff
changeset
|
4757 anonymized = DoPost(_REMOTE, '/studies/%s/anonymize' % study, '{}', |
|
93cd4fdd4a67
test_anonymize_relationships_4
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
233
diff
changeset
|
4758 'application/json')['ID'] |
|
93cd4fdd4a67
test_anonymize_relationships_4
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parents:
233
diff
changeset
|
4759 series = DoGet(_REMOTE, '/studies/%s/series' % anonymized) |
|
93cd4fdd4a67
test_anonymize_relationships_4
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
233
diff
changeset
|
4760 self.assertEqual(2, len(series)) |
|
93cd4fdd4a67
test_anonymize_relationships_4
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
233
diff
changeset
|
4761 |
|
93cd4fdd4a67
test_anonymize_relationships_4
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
233
diff
changeset
|
4762 cr = list(filter(lambda x: x['MainDicomTags']['Modality'] == 'CR', series)) |
|
93cd4fdd4a67
test_anonymize_relationships_4
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
233
diff
changeset
|
4763 pr = list(filter(lambda x: x['MainDicomTags']['Modality'] == 'PR', series)) |
|
93cd4fdd4a67
test_anonymize_relationships_4
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
233
diff
changeset
|
4764 self.assertEqual(1, len(cr)) |
|
93cd4fdd4a67
test_anonymize_relationships_4
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
233
diff
changeset
|
4765 self.assertEqual(1, len(pr)) |
|
93cd4fdd4a67
test_anonymize_relationships_4
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
233
diff
changeset
|
4766 self.assertEqual(1, len(cr[0]['Instances'])) |
|
93cd4fdd4a67
test_anonymize_relationships_4
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
233
diff
changeset
|
4767 self.assertEqual(1, len(pr[0]['Instances'])) |
|
93cd4fdd4a67
test_anonymize_relationships_4
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
233
diff
changeset
|
4768 |
|
93cd4fdd4a67
test_anonymize_relationships_4
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
233
diff
changeset
|
4769 crinstance = DoGet(_REMOTE, '/instances/%s' % cr[0]['Instances'][0]) |
|
93cd4fdd4a67
test_anonymize_relationships_4
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
233
diff
changeset
|
4770 tags = DoGet(_REMOTE, '/instances/%s/tags?short' % pr[0]['Instances'][0]) |
|
93cd4fdd4a67
test_anonymize_relationships_4
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
233
diff
changeset
|
4771 |
|
93cd4fdd4a67
test_anonymize_relationships_4
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
233
diff
changeset
|
4772 self.assertEqual(tags['0008,1115'][0]['0008,1140'][0]['0008,1155'], |
|
93cd4fdd4a67
test_anonymize_relationships_4
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
233
diff
changeset
|
4773 crinstance['MainDicomTags']['SOPInstanceUID']) |
|
93cd4fdd4a67
test_anonymize_relationships_4
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
233
diff
changeset
|
4774 self.assertEqual(tags['0008,1115'][0]['0008,1140'][0]['0008,1150'], |
|
93cd4fdd4a67
test_anonymize_relationships_4
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
233
diff
changeset
|
4775 '1.2.840.10008.5.1.4.1.1.1') # SOP class for CR Image Storage |
|
93cd4fdd4a67
test_anonymize_relationships_4
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
233
diff
changeset
|
4776 |
|
93cd4fdd4a67
test_anonymize_relationships_4
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
233
diff
changeset
|
4777 # This fails on Orthanc <= 1.5.6 |
|
93cd4fdd4a67
test_anonymize_relationships_4
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
233
diff
changeset
|
4778 self.assertEqual(tags['0008,1115'][0]['0020,000e'], |
|
93cd4fdd4a67
test_anonymize_relationships_4
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
233
diff
changeset
|
4779 cr[0]['MainDicomTags']['SeriesInstanceUID']) |
|
235
9929e4af2b7a
test_bitbucket_issue_140
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
234
diff
changeset
|
4780 |
|
9929e4af2b7a
test_bitbucket_issue_140
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
234
diff
changeset
|
4781 |
|
255
02c3d91b155c
added anonymization test for RTH data (currently failing)
amazy
parents:
254
diff
changeset
|
4782 def test_anonymize_relationships_5(self): |
|
02c3d91b155c
added anonymization test for RTH data (currently failing)
amazy
parents:
254
diff
changeset
|
4783 ct1 = UploadInstance(_REMOTE, 'HierarchicalAnonymization/RTH/CT01.dcm') |
|
02c3d91b155c
added anonymization test for RTH data (currently failing)
amazy
parents:
254
diff
changeset
|
4784 rt1 = UploadInstance(_REMOTE, 'HierarchicalAnonymization/RTH/RT.dcm') |
|
02c3d91b155c
added anonymization test for RTH data (currently failing)
amazy
parents:
254
diff
changeset
|
4785 oStudyId = ct1['ParentStudy'] |
|
02c3d91b155c
added anonymization test for RTH data (currently failing)
amazy
parents:
254
diff
changeset
|
4786 oCtInstanceId = ct1['ID'] |
|
02c3d91b155c
added anonymization test for RTH data (currently failing)
amazy
parents:
254
diff
changeset
|
4787 oRtInstanceId = rt1['ID'] |
|
02c3d91b155c
added anonymization test for RTH data (currently failing)
amazy
parents:
254
diff
changeset
|
4788 |
|
02c3d91b155c
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amazy
parents:
254
diff
changeset
|
4789 oCtTags = DoGet(_REMOTE, '/instances/%s/tags?simplify' % oCtInstanceId) |
|
02c3d91b155c
added anonymization test for RTH data (currently failing)
amazy
parents:
254
diff
changeset
|
4790 oRtTags = DoGet(_REMOTE, '/instances/%s/tags?simplify' % oRtInstanceId) |
|
02c3d91b155c
added anonymization test for RTH data (currently failing)
amazy
parents:
254
diff
changeset
|
4791 |
|
02c3d91b155c
added anonymization test for RTH data (currently failing)
amazy
parents:
254
diff
changeset
|
4792 # first validate the relationships in the source data |
|
02c3d91b155c
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amazy
parents:
254
diff
changeset
|
4793 oStudyUID = oCtTags['StudyInstanceUID'] |
|
02c3d91b155c
added anonymization test for RTH data (currently failing)
amazy
parents:
254
diff
changeset
|
4794 oRtSeriesUID = oRtTags['SeriesInstanceUID'] |
|
02c3d91b155c
added anonymization test for RTH data (currently failing)
amazy
parents:
254
diff
changeset
|
4795 oRtInstanceUID = oRtTags['SOPInstanceUID'] |
|
02c3d91b155c
added anonymization test for RTH data (currently failing)
amazy
parents:
254
diff
changeset
|
4796 oRtFrameOfReferenceUID = oRtTags['ReferencedFrameOfReferenceSequence'][0]['FrameOfReferenceUID'] |
|
02c3d91b155c
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amazy
parents:
254
diff
changeset
|
4797 oCtSeriesUID = oCtTags['SeriesInstanceUID'] |
|
02c3d91b155c
added anonymization test for RTH data (currently failing)
amazy
parents:
254
diff
changeset
|
4798 oCtInstanceUID = oCtTags['SOPInstanceUID'] |
|
02c3d91b155c
added anonymization test for RTH data (currently failing)
amazy
parents:
254
diff
changeset
|
4799 oCtFrameOfReferenceUID = oCtTags['FrameOfReferenceUID'] |
|
02c3d91b155c
added anonymization test for RTH data (currently failing)
amazy
parents:
254
diff
changeset
|
4800 |
|
02c3d91b155c
added anonymization test for RTH data (currently failing)
amazy
parents:
254
diff
changeset
|
4801 oContourSequenceCount = len(oRtTags['ROIContourSequence'][0]['ContourSequence']) |
|
02c3d91b155c
added anonymization test for RTH data (currently failing)
amazy
parents:
254
diff
changeset
|
4802 self.assertEqual(oCtFrameOfReferenceUID, oRtFrameOfReferenceUID) |
|
02c3d91b155c
added anonymization test for RTH data (currently failing)
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parents:
254
diff
changeset
|
4803 self.assertEqual(oStudyUID, oRtTags['ReferencedFrameOfReferenceSequence'][0]['RTReferencedStudySequence'][0]['ReferencedSOPInstanceUID']) |
|
02c3d91b155c
added anonymization test for RTH data (currently failing)
amazy
parents:
254
diff
changeset
|
4804 self.assertEqual(oCtSeriesUID, oRtTags['ReferencedFrameOfReferenceSequence'][0]['RTReferencedStudySequence'][0]['RTReferencedSeriesSequence'][0]['SeriesInstanceUID']) |
|
02c3d91b155c
added anonymization test for RTH data (currently failing)
amazy
parents:
254
diff
changeset
|
4805 self.assertEqual(oCtInstanceUID, oRtTags['ReferencedFrameOfReferenceSequence'][0]['RTReferencedStudySequence'][0]['RTReferencedSeriesSequence'][0]['ContourImageSequence'][0]['ReferencedSOPInstanceUID']) |
|
02c3d91b155c
added anonymization test for RTH data (currently failing)
amazy
parents:
254
diff
changeset
|
4806 self.assertEqual(oCtInstanceUID, oRtTags['ROIContourSequence'][0]['ContourSequence'][oContourSequenceCount-1]['ContourImageSequence'][0]['ReferencedSOPInstanceUID']) |
|
02c3d91b155c
added anonymization test for RTH data (currently failing)
amazy
parents:
254
diff
changeset
|
4807 |
|
02c3d91b155c
added anonymization test for RTH data (currently failing)
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parents:
254
diff
changeset
|
4808 ### anonymize |
|
02c3d91b155c
added anonymization test for RTH data (currently failing)
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parents:
254
diff
changeset
|
4809 |
|
02c3d91b155c
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amazy
parents:
254
diff
changeset
|
4810 aStudyId = DoPost(_REMOTE, '/studies/%s/anonymize' % oStudyId, '{}', |
|
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added anonymization test for RTH data (currently failing)
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parents:
254
diff
changeset
|
4811 'application/json')['ID'] |
|
02c3d91b155c
added anonymization test for RTH data (currently failing)
amazy
parents:
254
diff
changeset
|
4812 |
|
02c3d91b155c
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parents:
254
diff
changeset
|
4813 ### validate |
|
02c3d91b155c
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parents:
254
diff
changeset
|
4814 |
|
02c3d91b155c
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4815 aSeries = DoGet(_REMOTE, '/studies/%s/series' % aStudyId) |
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4816 self.assertEqual(2, len(aSeries)) |
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4817 |
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4818 aCt = list(filter(lambda x: x['MainDicomTags']['Modality'] == 'CT', aSeries)) |
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4819 aRt = list(filter(lambda x: x['MainDicomTags']['Modality'] == 'RTSTRUCT', aSeries)) |
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4820 aCtInstanceId = aCt[0]['Instances'][0] |
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4821 aRtInstanceId = aRt[0]['Instances'][0] |
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4822 aCtTags = DoGet(_REMOTE, '/instances/%s/tags?simplify' % aCtInstanceId) |
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4823 aRtTags = DoGet(_REMOTE, '/instances/%s/tags?simplify' % aRtInstanceId) |
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4824 |
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4825 # now validate the relationships in the anonymized data |
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4826 aStudyUID = aCtTags['StudyInstanceUID'] |
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4827 aRtSeriesUID = aRtTags['SeriesInstanceUID'] |
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4828 aRtInstanceUID = aRtTags['SOPInstanceUID'] |
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4829 aRtFrameOfReferenceUID = aRtTags['ReferencedFrameOfReferenceSequence'][0]['FrameOfReferenceUID'] |
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4830 aCtSeriesUID = aCtTags['SeriesInstanceUID'] |
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4831 aCtInstanceUID = aCtTags['SOPInstanceUID'] |
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4832 aCtFrameOfReferenceUID = aCtTags['FrameOfReferenceUID'] |
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|
4833 |
|
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|
4834 aContourSequenceCount = len(aRtTags['ROIContourSequence'][0]['ContourSequence']) |
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4835 # make sure all UIDs have been updated |
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4836 self.assertNotEqual(oStudyUID, aStudyUID) |
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4837 self.assertNotEqual(oRtSeriesUID, aRtSeriesUID) |
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4838 self.assertNotEqual(oRtInstanceUID, aRtInstanceUID) |
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4839 self.assertNotEqual(oRtFrameOfReferenceUID, aRtFrameOfReferenceUID) |
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4840 self.assertNotEqual(oCtSeriesUID, aCtSeriesUID) |
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4841 self.assertNotEqual(oCtInstanceUID, aCtInstanceUID) |
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4842 self.assertNotEqual(oCtFrameOfReferenceUID, aCtFrameOfReferenceUID) |
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4843 |
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|
4844 # validate the relationships |
|
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|
4845 self.assertEqual(oContourSequenceCount, aContourSequenceCount) |
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|
4846 self.assertEqual(aCtFrameOfReferenceUID, aRtFrameOfReferenceUID) |
| 256 | 4847 self.assertEqual(aStudyUID, aRtTags['ReferencedFrameOfReferenceSequence'][0]['RTReferencedStudySequence'][0]['ReferencedSOPInstanceUID']) |
| 4848 self.assertEqual(aCtSeriesUID, aRtTags['ReferencedFrameOfReferenceSequence'][0]['RTReferencedStudySequence'][0]['RTReferencedSeriesSequence'][0]['SeriesInstanceUID']) | |
|
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|
4849 self.assertEqual(aCtInstanceUID, aRtTags['ReferencedFrameOfReferenceSequence'][0]['RTReferencedStudySequence'][0]['RTReferencedSeriesSequence'][0]['ContourImageSequence'][0]['ReferencedSOPInstanceUID']) |
|
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|
4850 self.assertEqual(aCtInstanceUID, aRtTags['ROIContourSequence'][0]['ContourSequence'][aContourSequenceCount-1]['ContourImageSequence'][0]['ReferencedSOPInstanceUID']) |
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4851 |
| 256 | 4852 def test_anonymize_relationships_5b(self): |
| 4853 # same test as previous one but, this time, we force the StudyInstanceUID | |
| 4854 ct1 = UploadInstance(_REMOTE, 'HierarchicalAnonymization/RTH/CT01.dcm') | |
| 4855 rt1 = UploadInstance(_REMOTE, 'HierarchicalAnonymization/RTH/RT.dcm') | |
| 4856 oStudyId = ct1['ParentStudy'] | |
| 4857 oCtInstanceId = ct1['ID'] | |
| 4858 oRtInstanceId = rt1['ID'] | |
| 4859 | |
| 4860 oCtTags = DoGet(_REMOTE, '/instances/%s/tags?simplify' % oCtInstanceId) | |
| 4861 oRtTags = DoGet(_REMOTE, '/instances/%s/tags?simplify' % oRtInstanceId) | |
| 4862 | |
| 4863 ### anonymize while forcing the StudyInstanceUID | |
| 4864 | |
| 4865 aStudyId = DoPost(_REMOTE, '/studies/%s/anonymize' % oStudyId, '{ "Replace" : { "StudyInstanceUID" : "1.2.3.4"}, "Force": true}', | |
| 4866 'application/json')['ID'] | |
| 4867 | |
| 4868 ### validate | |
| 4869 | |
| 4870 aSeries = DoGet(_REMOTE, '/studies/%s/series' % aStudyId) | |
| 4871 self.assertEqual(2, len(aSeries)) | |
| 4872 | |
| 4873 aCt = list(filter(lambda x: x['MainDicomTags']['Modality'] == 'CT', aSeries)) | |
| 4874 aRt = list(filter(lambda x: x['MainDicomTags']['Modality'] == 'RTSTRUCT', aSeries)) | |
| 4875 aCtInstanceId = aCt[0]['Instances'][0] | |
| 4876 aRtInstanceId = aRt[0]['Instances'][0] | |
| 4877 aCtTags = DoGet(_REMOTE, '/instances/%s/tags?simplify' % aCtInstanceId) | |
| 4878 aRtTags = DoGet(_REMOTE, '/instances/%s/tags?simplify' % aRtInstanceId) | |
| 4879 | |
| 4880 self.assertEqual("1.2.3.4", aCtTags['StudyInstanceUID']) | |
| 4881 self.assertEqual("1.2.3.4", aRtTags['StudyInstanceUID']) | |
| 4882 self.assertEqual("1.2.3.4", aRtTags['ReferencedFrameOfReferenceSequence'][0]['RTReferencedStudySequence'][0]['ReferencedSOPInstanceUID']) | |
|
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4883 |
|
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4884 |
|
235
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|
4885 def test_bitbucket_issue_140(self): |
| 266 | 4886 # "Modifying private tags with REST API changes VR from LO to |
| 267 | 4887 # UN." This test fails if DCMTK <= 3.6.1 (e.g. fails on Ubuntu 16.04). |
| 319 | 4888 # https://bugs.orthanc-server.com/show_bug.cgi?id=140 |
|
235
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4889 source = UploadInstance(_REMOTE, 'Issue140.dcm') ['ID'] |
|
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|
4890 series = DoGet(_REMOTE, '/instances/%s' % source) ['ParentSeries'] |
|
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4891 |
|
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|
4892 target = DoPost(_REMOTE, '/series/%s/modify' % series, { |
| 266 | 4893 'Replace' : { 'RadioButton3' : 'aaabbbccc' }, |
| 4894 'PrivateCreator' : 'RadioLogic', # <= the trick is here | |
|
235
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|
4895 }, 'application/json') ['ID'] |
|
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4896 |
|
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4897 instances = DoGet(_REMOTE, '/series/%s/instances' % target) |
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4898 self.assertEqual(1, len(instances)) |
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4899 |
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4900 tags = DoGet(_REMOTE, '/instances/%s/tags' % source) |
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4901 t = tags['4321,1012'] |
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4902 self.assertEqual('String', t['Type']) |
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4903 self.assertEqual('RadioButton3', t['Name']) |
|
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4904 self.assertEqual('RadioLogic', t['PrivateCreator']) |
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|
4905 self.assertEqual('jklmopq', t['Value']) |
|
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|
4906 |
|
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|
4907 tags = DoGet(_REMOTE, '/instances/%s/tags' % instances[0]['ID']) |
|
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|
4908 t = tags['4321,1012'] |
| 327 | 4909 self.assertEqual('String', t['Type']) # This fails if DCMTK <= 3.6.1 |
|
235
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|
4910 self.assertEqual('RadioButton3', t['Name']) |
|
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|
4911 self.assertEqual('RadioLogic', t['PrivateCreator']) |
|
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|
4912 self.assertEqual('aaabbbccc', t['Value']) |
|
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4913 |
|
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4914 |
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|
4915 def test_find_normalize(self): |
|
2de1aec255ae
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|
4916 # https://groups.google.com/d/msg/orthanc-users/AIwooGjsh94/YL28MNY4AgAJ |
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4917 |
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changeset
|
4918 UploadInstance(_REMOTE, 'Knee/T1/IM-0001-0001.dcm') |
|
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4919 |
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|
4920 a = DoPost(_REMOTE, '/modalities/self/query', { |
|
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|
4921 'Level' : 'Instance', |
|
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4922 'Query' : { 'Rows' : '42' } |
|
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4923 }) ['ID'] |
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4924 |
|
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|
4925 b = DoGet(_REMOTE, '/queries/%s/answers?expand&simplify' % a) |
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4926 self.assertEqual(1, len(b)) |
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4927 self.assertFalse('Rows' in b[0]) |
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4928 |
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|
4929 a = DoPost(_REMOTE, '/modalities/self/query', { |
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4930 'Level' : 'Instance', |
|
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4931 'Query' : { 'Rows' : '42' }, |
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4932 'Normalize' : False |
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4933 }) ['ID'] |
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4934 |
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|
4935 b = DoGet(_REMOTE, '/queries/%s/answers' % a) |
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4936 self.assertEqual(0, len(b)) |
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4937 |
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|
4938 a = DoPost(_REMOTE, '/modalities/self/query', { |
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4939 'Level' : 'Instance', |
|
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4940 'Query' : { 'Rows' : '512' }, |
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4941 'Normalize' : False |
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4942 }) ['ID'] |
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4943 |
|
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|
4944 b = DoGet(_REMOTE, '/queries/%s/answers?expand&simplify' % a) |
|
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4945 self.assertEqual(1, len(b)) |
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4946 self.assertTrue('Rows' in b[0]) |
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4947 self.assertEqual('512', b[0]['Rows']) |
| 237 | 4948 |
| 4949 a = DoPost(_REMOTE, '/modalities/self/query', { | |
| 4950 'Level' : 'Instance', | |
| 4951 'Query' : { 'Rows' : '' }, | |
| 4952 'Normalize' : False | |
| 4953 }) ['ID'] | |
| 4954 | |
| 4955 b = DoGet(_REMOTE, '/queries/%s/answers?expand&simplify' % a) | |
| 4956 self.assertEqual(1, len(b)) | |
| 4957 self.assertTrue('Rows' in b[0]) | |
| 4958 self.assertEqual('512', b[0]['Rows']) | |
| 4959 | |
| 4960 self.assertRaises(Exception, lambda: DoPost( | |
| 4961 _REMOTE, '/modalities/self/query', { | |
| 4962 'Level' : 'Instance', | |
| 4963 'Query' : { 'Rows' : '*' }, # Out-of-range value | |
| 4964 'Normalize' : False | |
| 4965 })) | |
|
243
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237
diff
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|
4966 |
|
cccf697a4e13
test_bitbucket_issue_141
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parents:
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diff
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|
4967 |
|
cccf697a4e13
test_bitbucket_issue_141
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parents:
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diff
changeset
|
4968 def test_bitbucket_issue_141(self): |
| 319 | 4969 # https://bugs.orthanc-server.com/show_bug.cgi?id=141 |
|
243
cccf697a4e13
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parents:
237
diff
changeset
|
4970 a = UploadInstance(_REMOTE, 'Issue141.dcm') ['ID'] |
|
cccf697a4e13
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parents:
237
diff
changeset
|
4971 study = '494c8037-b237f263-d8f15075-c8cb2280-daf39bd1' |
|
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Sebastien Jodogne <s.jodogne@gmail.com>
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diff
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|
4972 |
|
cccf697a4e13
test_bitbucket_issue_141
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
237
diff
changeset
|
4973 with open(GetDatabasePath('HelloWorld.pdf'), 'rb') as f: |
|
cccf697a4e13
test_bitbucket_issue_141
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
237
diff
changeset
|
4974 pdf = f.read() |
|
cccf697a4e13
test_bitbucket_issue_141
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
237
diff
changeset
|
4975 |
|
cccf697a4e13
test_bitbucket_issue_141
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parents:
237
diff
changeset
|
4976 b = DoPost(_REMOTE, '/tools/create-dicom', { |
|
cccf697a4e13
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Sebastien Jodogne <s.jodogne@gmail.com>
parents:
237
diff
changeset
|
4977 'Parent' : study, |
|
cccf697a4e13
test_bitbucket_issue_141
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
237
diff
changeset
|
4978 'Tags' : {}, |
|
cccf697a4e13
test_bitbucket_issue_141
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
237
diff
changeset
|
4979 'Content' : 'data:application/pdf;base64,' + base64.b64encode(pdf) |
|
cccf697a4e13
test_bitbucket_issue_141
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
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|
4980 }) ['ID'] |
|
cccf697a4e13
test_bitbucket_issue_141
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
237
diff
changeset
|
4981 |
|
cccf697a4e13
test_bitbucket_issue_141
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
237
diff
changeset
|
4982 tagsA = DoGet(_REMOTE, '/instances/%s/tags?short' % a) |
|
cccf697a4e13
test_bitbucket_issue_141
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
237
diff
changeset
|
4983 tagsB = DoGet(_REMOTE, '/instances/%s/tags?short' % b) |
|
cccf697a4e13
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Sebastien Jodogne <s.jodogne@gmail.com>
parents:
237
diff
changeset
|
4984 self.assertEqual(tagsA['0008,0005'], tagsB['0008,0005']) |
|
cccf697a4e13
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Sebastien Jodogne <s.jodogne@gmail.com>
parents:
237
diff
changeset
|
4985 self.assertEqual(tagsA['0008,1030'], tagsB['0008,1030']) |
|
247
1abdab0ba0e6
test_modifying_missing_patientid
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
243
diff
changeset
|
4986 |
|
1abdab0ba0e6
test_modifying_missing_patientid
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
243
diff
changeset
|
4987 |
|
1abdab0ba0e6
test_modifying_missing_patientid
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
243
diff
changeset
|
4988 def test_modifying_missing_patientid(self): |
|
1abdab0ba0e6
test_modifying_missing_patientid
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
243
diff
changeset
|
4989 # https://groups.google.com/d/msg/orthanc-users/aphG_h1AHVg/rfOTtTPTAgAJ |
|
1abdab0ba0e6
test_modifying_missing_patientid
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
243
diff
changeset
|
4990 UploadInstance(_REMOTE, '2019-06-17-VedranZdesic.dcm') |
|
1abdab0ba0e6
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243
diff
changeset
|
4991 DoPost(_REMOTE, '/studies/0c4aca1d-c107a241-6659d6aa-594c674a-a468b94a/modify', {}) |
| 262 | 4992 |
| 4993 | |
| 4994 def test_log_level(self): | |
| 319 | 4995 # https://bugs.orthanc-server.com/show_bug.cgi?id=65 |
| 262 | 4996 original = DoGet(_REMOTE, '/tools/log-level') |
| 4997 | |
| 4998 DoPut(_REMOTE, '/tools/log-level', 'default') | |
| 4999 self.assertEqual('default', DoGet(_REMOTE, '/tools/log-level')) | |
| 5000 DoGet(_REMOTE, '/system') | |
| 5001 | |
| 5002 DoPut(_REMOTE, '/tools/log-level', 'verbose') | |
| 5003 self.assertEqual('verbose', DoGet(_REMOTE, '/tools/log-level')) | |
| 5004 DoGet(_REMOTE, '/system') | |
| 5005 | |
| 5006 DoPut(_REMOTE, '/tools/log-level', 'trace') | |
| 5007 self.assertEqual('trace', DoGet(_REMOTE, '/tools/log-level')) | |
| 5008 DoGet(_REMOTE, '/system') | |
| 5009 | |
| 5010 self.assertRaises(Exception, lambda: DoPut(_REMOTE, '/tools/log-level', 'nope')) | |
| 5011 | |
| 5012 # Switch back to the original log level | |
| 5013 DoPut(_REMOTE, '/tools/log-level', original) | |
|
264
445f498bc1d4
test_upload_compressed
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
263
diff
changeset
|
5014 |
|
445f498bc1d4
test_upload_compressed
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
263
diff
changeset
|
5015 |
|
445f498bc1d4
test_upload_compressed
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
263
diff
changeset
|
5016 def test_upload_compressed(self): |
| 265 | 5017 # New in Orthanc 1.6.0 |
|
264
445f498bc1d4
test_upload_compressed
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
263
diff
changeset
|
5018 with open(GetDatabasePath('DummyCT.dcm.gz'), 'rb') as f: |
|
445f498bc1d4
test_upload_compressed
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
263
diff
changeset
|
5019 d = f.read() |
|
445f498bc1d4
test_upload_compressed
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
263
diff
changeset
|
5020 |
|
445f498bc1d4
test_upload_compressed
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
263
diff
changeset
|
5021 self.assertRaises(Exception, lambda: DoPost(_REMOTE, '/instances', d, 'application/dicom')) |
|
445f498bc1d4
test_upload_compressed
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
263
diff
changeset
|
5022 |
|
445f498bc1d4
test_upload_compressed
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
263
diff
changeset
|
5023 self.assertRaises(Exception, lambda: DoPost(_REMOTE, '/instances', d, 'application/dicom', |
|
445f498bc1d4
test_upload_compressed
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
263
diff
changeset
|
5024 headers = { 'Content-Encoding' : 'nope' })) |
|
445f498bc1d4
test_upload_compressed
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
263
diff
changeset
|
5025 |
|
445f498bc1d4
test_upload_compressed
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
263
diff
changeset
|
5026 a = DoPost(_REMOTE, '/instances', d, 'application/dicom', |
|
445f498bc1d4
test_upload_compressed
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
263
diff
changeset
|
5027 headers = { 'Content-Encoding' : 'gzip' }) |
|
445f498bc1d4
test_upload_compressed
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
263
diff
changeset
|
5028 self.assertEqual('66a662ce-7430e543-bad44d47-0dc5a943-ec7a538d', a['ID']) |
| 262 | 5029 |
| 5030 | |
|
263
a2719263fd04
test_study_series_find_inconsistency
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
262
diff
changeset
|
5031 def test_study_series_find_inconsistency(self): |
|
a2719263fd04
test_study_series_find_inconsistency
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
262
diff
changeset
|
5032 # https://groups.google.com/forum/#!topic/orthanc-users/bLv6Z11COy0 |
|
a2719263fd04
test_study_series_find_inconsistency
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
262
diff
changeset
|
5033 |
|
a2719263fd04
test_study_series_find_inconsistency
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
262
diff
changeset
|
5034 def CountAnswers(query): |
|
a2719263fd04
test_study_series_find_inconsistency
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
262
diff
changeset
|
5035 a = DoPost(_REMOTE, 'modalities/self/query', query) |
|
a2719263fd04
test_study_series_find_inconsistency
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
262
diff
changeset
|
5036 return len(DoGet(_REMOTE, '%s/answers' % a['Path'])) |
|
a2719263fd04
test_study_series_find_inconsistency
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
262
diff
changeset
|
5037 |
|
a2719263fd04
test_study_series_find_inconsistency
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
262
diff
changeset
|
5038 # This instance has "SeriesDescription" (0008,103e) tag, but no |
|
a2719263fd04
test_study_series_find_inconsistency
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
262
diff
changeset
|
5039 # "ProtocolName" (0018,1030). Both of those tags are part of |
|
a2719263fd04
test_study_series_find_inconsistency
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
262
diff
changeset
|
5040 # the "main DICOM tags" of Orthanc. |
|
a2719263fd04
test_study_series_find_inconsistency
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
262
diff
changeset
|
5041 UploadInstance(_REMOTE, 'Issue137.dcm') |
|
a2719263fd04
test_study_series_find_inconsistency
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
262
diff
changeset
|
5042 |
|
a2719263fd04
test_study_series_find_inconsistency
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
262
diff
changeset
|
5043 |
|
a2719263fd04
test_study_series_find_inconsistency
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
262
diff
changeset
|
5044 self.assertEqual(1, CountAnswers({ |
|
a2719263fd04
test_study_series_find_inconsistency
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
262
diff
changeset
|
5045 'Level' : 'Study', |
|
a2719263fd04
test_study_series_find_inconsistency
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
262
diff
changeset
|
5046 })) |
|
a2719263fd04
test_study_series_find_inconsistency
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
262
diff
changeset
|
5047 |
|
a2719263fd04
test_study_series_find_inconsistency
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
262
diff
changeset
|
5048 self.assertEqual(1, CountAnswers({ |
|
a2719263fd04
test_study_series_find_inconsistency
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
262
diff
changeset
|
5049 'Level' : 'Series', |
|
a2719263fd04
test_study_series_find_inconsistency
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
262
diff
changeset
|
5050 })) |
|
a2719263fd04
test_study_series_find_inconsistency
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
262
diff
changeset
|
5051 |
|
a2719263fd04
test_study_series_find_inconsistency
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
262
diff
changeset
|
5052 |
|
a2719263fd04
test_study_series_find_inconsistency
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
262
diff
changeset
|
5053 ## |
|
a2719263fd04
test_study_series_find_inconsistency
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
262
diff
changeset
|
5054 ## "SeriesDescription" is present, and has VR "CS" => wildcard is allowed |
|
a2719263fd04
test_study_series_find_inconsistency
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
262
diff
changeset
|
5055 ## http://dicom.nema.org/medical/dicom/2019e/output/chtml/part04/sect_C.2.2.2.4.html |
|
a2719263fd04
test_study_series_find_inconsistency
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
262
diff
changeset
|
5056 ## |
|
a2719263fd04
test_study_series_find_inconsistency
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
262
diff
changeset
|
5057 |
|
a2719263fd04
test_study_series_find_inconsistency
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
262
diff
changeset
|
5058 # At the study level, the "SeriesDescription" tag is not allowed, but |
|
a2719263fd04
test_study_series_find_inconsistency
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
262
diff
changeset
|
5059 # is wiped out by the normalization |
|
a2719263fd04
test_study_series_find_inconsistency
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
262
diff
changeset
|
5060 self.assertEqual(0, CountAnswers({ |
|
a2719263fd04
test_study_series_find_inconsistency
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
262
diff
changeset
|
5061 'Level' : 'Study', |
|
a2719263fd04
test_study_series_find_inconsistency
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
262
diff
changeset
|
5062 'Query' : { |
|
a2719263fd04
test_study_series_find_inconsistency
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
262
diff
changeset
|
5063 'SeriesDescription' : 'NOPE' |
|
a2719263fd04
test_study_series_find_inconsistency
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
262
diff
changeset
|
5064 }, |
|
a2719263fd04
test_study_series_find_inconsistency
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
262
diff
changeset
|
5065 'Normalize' : False |
|
a2719263fd04
test_study_series_find_inconsistency
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
262
diff
changeset
|
5066 })) |
|
a2719263fd04
test_study_series_find_inconsistency
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
262
diff
changeset
|
5067 self.assertEqual(0, CountAnswers({ |
|
a2719263fd04
test_study_series_find_inconsistency
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
262
diff
changeset
|
5068 # This test fails on Orthanc <= 1.5.8 |
|
a2719263fd04
test_study_series_find_inconsistency
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
262
diff
changeset
|
5069 'Level' : 'Study', |
|
a2719263fd04
test_study_series_find_inconsistency
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
262
diff
changeset
|
5070 'Query' : { |
|
a2719263fd04
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Sebastien Jodogne <s.jodogne@gmail.com>
parents:
262
diff
changeset
|
5071 'SeriesDescription' : '*' # Wildcard matching => no match, as the tag is absent |
|
a2719263fd04
test_study_series_find_inconsistency
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
262
diff
changeset
|
5072 }, |
|
a2719263fd04
test_study_series_find_inconsistency
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
262
diff
changeset
|
5073 'Normalize' : False |
|
a2719263fd04
test_study_series_find_inconsistency
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
262
diff
changeset
|
5074 })) |
|
a2719263fd04
test_study_series_find_inconsistency
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
262
diff
changeset
|
5075 self.assertEqual(1, CountAnswers({ |
|
a2719263fd04
test_study_series_find_inconsistency
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
262
diff
changeset
|
5076 'Level' : 'Study', |
|
a2719263fd04
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Sebastien Jodogne <s.jodogne@gmail.com>
parents:
262
diff
changeset
|
5077 'Query' : { |
|
a2719263fd04
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Sebastien Jodogne <s.jodogne@gmail.com>
parents:
262
diff
changeset
|
5078 'SeriesDescription' : 'THIS^VALUE^IS^WIPED^OUT' |
|
a2719263fd04
test_study_series_find_inconsistency
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
262
diff
changeset
|
5079 }, |
|
a2719263fd04
test_study_series_find_inconsistency
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
262
diff
changeset
|
5080 'Normalize' : True |
|
a2719263fd04
test_study_series_find_inconsistency
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
262
diff
changeset
|
5081 })) |
|
a2719263fd04
test_study_series_find_inconsistency
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
262
diff
changeset
|
5082 self.assertEqual(1, CountAnswers({ |
|
a2719263fd04
test_study_series_find_inconsistency
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
262
diff
changeset
|
5083 'Level' : 'Study', |
|
a2719263fd04
test_study_series_find_inconsistency
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
262
diff
changeset
|
5084 'Query' : { |
|
a2719263fd04
test_study_series_find_inconsistency
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
262
diff
changeset
|
5085 'SeriesDescription' : '*' # Matches, as wiped out by the normalization |
|
a2719263fd04
test_study_series_find_inconsistency
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
262
diff
changeset
|
5086 }, |
|
a2719263fd04
test_study_series_find_inconsistency
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
262
diff
changeset
|
5087 'Normalize' : True |
|
a2719263fd04
test_study_series_find_inconsistency
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
262
diff
changeset
|
5088 })) |
|
a2719263fd04
test_study_series_find_inconsistency
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
262
diff
changeset
|
5089 |
|
a2719263fd04
test_study_series_find_inconsistency
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
262
diff
changeset
|
5090 for normalize in [ True, False ]: |
|
a2719263fd04
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Sebastien Jodogne <s.jodogne@gmail.com>
parents:
262
diff
changeset
|
5091 # At the series level, the "SeriesDescription" tag is allowed, and |
|
a2719263fd04
test_study_series_find_inconsistency
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
262
diff
changeset
|
5092 # normalization has no effect |
|
a2719263fd04
test_study_series_find_inconsistency
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
262
diff
changeset
|
5093 |
|
a2719263fd04
test_study_series_find_inconsistency
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
262
diff
changeset
|
5094 # "Universal matching" will match all entities, including |
|
a2719263fd04
test_study_series_find_inconsistency
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
262
diff
changeset
|
5095 # those with the missing tag |
|
a2719263fd04
test_study_series_find_inconsistency
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
262
diff
changeset
|
5096 # http://dicom.nema.org/medical/dicom/2019e/output/chtml/part04/sect_C.2.2.2.3.html |
|
a2719263fd04
test_study_series_find_inconsistency
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
262
diff
changeset
|
5097 self.assertEqual(1, CountAnswers({ |
|
a2719263fd04
test_study_series_find_inconsistency
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
262
diff
changeset
|
5098 'Level' : 'Series', |
|
a2719263fd04
test_study_series_find_inconsistency
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
262
diff
changeset
|
5099 'Query' : { |
|
a2719263fd04
test_study_series_find_inconsistency
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
262
diff
changeset
|
5100 'SeriesDescription' : '' # Universal matching |
|
a2719263fd04
test_study_series_find_inconsistency
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
262
diff
changeset
|
5101 }, |
|
a2719263fd04
test_study_series_find_inconsistency
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
262
diff
changeset
|
5102 'Normalize' : normalize, |
|
a2719263fd04
test_study_series_find_inconsistency
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
262
diff
changeset
|
5103 })) |
|
a2719263fd04
test_study_series_find_inconsistency
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
262
diff
changeset
|
5104 # "Universal matching" will match all entities, including |
|
a2719263fd04
test_study_series_find_inconsistency
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
262
diff
changeset
|
5105 # those with the missing tag |
|
a2719263fd04
test_study_series_find_inconsistency
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
262
diff
changeset
|
5106 # http://dicom.nema.org/medical/dicom/2019e/output/chtml/part04/sect_C.2.2.2.3.html |
|
a2719263fd04
test_study_series_find_inconsistency
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
262
diff
changeset
|
5107 self.assertEqual(1, CountAnswers({ |
|
a2719263fd04
test_study_series_find_inconsistency
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
262
diff
changeset
|
5108 'Level' : 'Series', |
|
a2719263fd04
test_study_series_find_inconsistency
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
262
diff
changeset
|
5109 'Query' : { |
|
a2719263fd04
test_study_series_find_inconsistency
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
262
diff
changeset
|
5110 'SeriesDescription' : '*' # Wildcard matching |
|
a2719263fd04
test_study_series_find_inconsistency
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
262
diff
changeset
|
5111 }, |
|
a2719263fd04
test_study_series_find_inconsistency
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
262
diff
changeset
|
5112 'Normalize' : normalize, |
|
a2719263fd04
test_study_series_find_inconsistency
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
262
diff
changeset
|
5113 })) |
|
a2719263fd04
test_study_series_find_inconsistency
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
262
diff
changeset
|
5114 self.assertEqual(1, CountAnswers({ |
|
a2719263fd04
test_study_series_find_inconsistency
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
262
diff
changeset
|
5115 'Level' : 'Series', |
|
a2719263fd04
test_study_series_find_inconsistency
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
262
diff
changeset
|
5116 'Query' : { |
|
a2719263fd04
test_study_series_find_inconsistency
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
262
diff
changeset
|
5117 'SeriesDescription' : '*model*' # The actual value is "STL model: intraop Report" |
|
a2719263fd04
test_study_series_find_inconsistency
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
262
diff
changeset
|
5118 }, |
|
a2719263fd04
test_study_series_find_inconsistency
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
262
diff
changeset
|
5119 'Normalize' : normalize, |
|
a2719263fd04
test_study_series_find_inconsistency
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
262
diff
changeset
|
5120 })) |
|
a2719263fd04
test_study_series_find_inconsistency
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
262
diff
changeset
|
5121 self.assertEqual(0, CountAnswers({ |
|
a2719263fd04
test_study_series_find_inconsistency
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
262
diff
changeset
|
5122 'Level' : 'Series', |
|
a2719263fd04
test_study_series_find_inconsistency
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
262
diff
changeset
|
5123 'Query' : { |
|
a2719263fd04
test_study_series_find_inconsistency
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
262
diff
changeset
|
5124 'SeriesDescription' : '*MISMATCHED^VALUE*' |
|
a2719263fd04
test_study_series_find_inconsistency
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
262
diff
changeset
|
5125 }, |
|
a2719263fd04
test_study_series_find_inconsistency
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
262
diff
changeset
|
5126 'Normalize' : normalize, |
|
a2719263fd04
test_study_series_find_inconsistency
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
262
diff
changeset
|
5127 })) |
|
a2719263fd04
test_study_series_find_inconsistency
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
262
diff
changeset
|
5128 |
|
a2719263fd04
test_study_series_find_inconsistency
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
262
diff
changeset
|
5129 # Universal matching matches any instance, even if the |
|
a2719263fd04
test_study_series_find_inconsistency
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
262
diff
changeset
|
5130 # query is at the study-level, and thus if "SeriesDescription" |
|
a2719263fd04
test_study_series_find_inconsistency
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
262
diff
changeset
|
5131 # makes no sense |
|
a2719263fd04
test_study_series_find_inconsistency
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
262
diff
changeset
|
5132 self.assertEqual(1, CountAnswers({ |
|
a2719263fd04
test_study_series_find_inconsistency
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
262
diff
changeset
|
5133 'Level' : 'Study', |
|
a2719263fd04
test_study_series_find_inconsistency
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
262
diff
changeset
|
5134 'Query' : { |
|
a2719263fd04
test_study_series_find_inconsistency
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
262
diff
changeset
|
5135 'SeriesDescription' : '' # Universal matching |
|
a2719263fd04
test_study_series_find_inconsistency
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
262
diff
changeset
|
5136 }, |
|
a2719263fd04
test_study_series_find_inconsistency
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
262
diff
changeset
|
5137 'Normalize' : normalize, |
|
a2719263fd04
test_study_series_find_inconsistency
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
262
diff
changeset
|
5138 })) |
|
a2719263fd04
test_study_series_find_inconsistency
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
262
diff
changeset
|
5139 |
|
a2719263fd04
test_study_series_find_inconsistency
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
262
diff
changeset
|
5140 |
|
a2719263fd04
test_study_series_find_inconsistency
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
262
diff
changeset
|
5141 |
|
a2719263fd04
test_study_series_find_inconsistency
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
262
diff
changeset
|
5142 ## |
|
a2719263fd04
test_study_series_find_inconsistency
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
262
diff
changeset
|
5143 ## "ProtocolName" is absent, and has VR "CS" => wildcard is allowed |
|
a2719263fd04
test_study_series_find_inconsistency
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
262
diff
changeset
|
5144 ## |
|
a2719263fd04
test_study_series_find_inconsistency
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
262
diff
changeset
|
5145 |
|
a2719263fd04
test_study_series_find_inconsistency
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
262
diff
changeset
|
5146 # At the study level, the "ProtocolName" tag is not allowed, but |
|
a2719263fd04
test_study_series_find_inconsistency
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
262
diff
changeset
|
5147 # is wiped out by the normalization |
|
a2719263fd04
test_study_series_find_inconsistency
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
262
diff
changeset
|
5148 self.assertEqual(0, CountAnswers({ |
|
a2719263fd04
test_study_series_find_inconsistency
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
262
diff
changeset
|
5149 'Level' : 'Study', |
|
a2719263fd04
test_study_series_find_inconsistency
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
262
diff
changeset
|
5150 'Query' : { |
|
a2719263fd04
test_study_series_find_inconsistency
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
262
diff
changeset
|
5151 'ProtocolName' : 'NOPE' |
|
a2719263fd04
test_study_series_find_inconsistency
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
262
diff
changeset
|
5152 }, |
|
a2719263fd04
test_study_series_find_inconsistency
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
262
diff
changeset
|
5153 'Normalize' : False |
|
a2719263fd04
test_study_series_find_inconsistency
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
262
diff
changeset
|
5154 })) |
|
a2719263fd04
test_study_series_find_inconsistency
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
262
diff
changeset
|
5155 self.assertEqual(0, CountAnswers({ |
|
a2719263fd04
test_study_series_find_inconsistency
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
262
diff
changeset
|
5156 'Level' : 'Study', |
|
a2719263fd04
test_study_series_find_inconsistency
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
262
diff
changeset
|
5157 'Query' : { |
|
a2719263fd04
test_study_series_find_inconsistency
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
262
diff
changeset
|
5158 'ProtocolName' : '*' # Wildcard matching => no match, as the tag is absent |
|
a2719263fd04
test_study_series_find_inconsistency
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
262
diff
changeset
|
5159 }, |
|
a2719263fd04
test_study_series_find_inconsistency
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
262
diff
changeset
|
5160 'Normalize' : False |
|
a2719263fd04
test_study_series_find_inconsistency
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
262
diff
changeset
|
5161 })) |
|
a2719263fd04
test_study_series_find_inconsistency
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
262
diff
changeset
|
5162 self.assertEqual(1, CountAnswers({ |
|
a2719263fd04
test_study_series_find_inconsistency
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
262
diff
changeset
|
5163 'Level' : 'Study', |
|
a2719263fd04
test_study_series_find_inconsistency
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
262
diff
changeset
|
5164 'Query' : { |
|
a2719263fd04
test_study_series_find_inconsistency
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
262
diff
changeset
|
5165 'ProtocolName' : 'THIS^VALUE^IS^WIPED^OUT' |
|
a2719263fd04
test_study_series_find_inconsistency
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
262
diff
changeset
|
5166 }, |
|
a2719263fd04
test_study_series_find_inconsistency
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
262
diff
changeset
|
5167 'Normalize' : True |
|
a2719263fd04
test_study_series_find_inconsistency
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
262
diff
changeset
|
5168 })) |
|
a2719263fd04
test_study_series_find_inconsistency
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
262
diff
changeset
|
5169 self.assertEqual(1, CountAnswers({ |
|
a2719263fd04
test_study_series_find_inconsistency
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
262
diff
changeset
|
5170 'Level' : 'Study', |
|
a2719263fd04
test_study_series_find_inconsistency
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
262
diff
changeset
|
5171 'Query' : { |
|
a2719263fd04
test_study_series_find_inconsistency
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
262
diff
changeset
|
5172 'ProtocolName' : '*' # Matches, as wiped out by the normalization |
|
a2719263fd04
test_study_series_find_inconsistency
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
262
diff
changeset
|
5173 }, |
|
a2719263fd04
test_study_series_find_inconsistency
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
262
diff
changeset
|
5174 'Normalize' : True |
|
a2719263fd04
test_study_series_find_inconsistency
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
262
diff
changeset
|
5175 })) |
|
a2719263fd04
test_study_series_find_inconsistency
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
262
diff
changeset
|
5176 |
|
a2719263fd04
test_study_series_find_inconsistency
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
262
diff
changeset
|
5177 for normalize in [ True, False ]: |
|
a2719263fd04
test_study_series_find_inconsistency
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
262
diff
changeset
|
5178 # At the series level, the "ProtocolName" tag is allowed, and |
|
a2719263fd04
test_study_series_find_inconsistency
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
262
diff
changeset
|
5179 # normalization has no effect |
|
a2719263fd04
test_study_series_find_inconsistency
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
262
diff
changeset
|
5180 |
|
a2719263fd04
test_study_series_find_inconsistency
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
262
diff
changeset
|
5181 self.assertEqual(1, CountAnswers({ |
|
a2719263fd04
test_study_series_find_inconsistency
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
262
diff
changeset
|
5182 'Level' : 'Series', |
|
a2719263fd04
test_study_series_find_inconsistency
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
262
diff
changeset
|
5183 'Query' : { |
|
a2719263fd04
test_study_series_find_inconsistency
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
262
diff
changeset
|
5184 'ProtocolName' : '' # Universal matching |
|
a2719263fd04
test_study_series_find_inconsistency
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
262
diff
changeset
|
5185 }, |
|
a2719263fd04
test_study_series_find_inconsistency
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
262
diff
changeset
|
5186 'Normalize' : normalize, |
|
a2719263fd04
test_study_series_find_inconsistency
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
262
diff
changeset
|
5187 })) |
|
a2719263fd04
test_study_series_find_inconsistency
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
262
diff
changeset
|
5188 self.assertEqual(0, CountAnswers({ |
|
a2719263fd04
test_study_series_find_inconsistency
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
262
diff
changeset
|
5189 'Level' : 'Series', |
|
a2719263fd04
test_study_series_find_inconsistency
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
262
diff
changeset
|
5190 'Query' : { |
|
a2719263fd04
test_study_series_find_inconsistency
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
262
diff
changeset
|
5191 'ProtocolName' : '*' # Wildcard matching => no match, as the tag is absent |
|
a2719263fd04
test_study_series_find_inconsistency
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
262
diff
changeset
|
5192 }, |
|
a2719263fd04
test_study_series_find_inconsistency
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
262
diff
changeset
|
5193 'Normalize' : normalize, |
|
a2719263fd04
test_study_series_find_inconsistency
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
262
diff
changeset
|
5194 })) |
|
a2719263fd04
test_study_series_find_inconsistency
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
262
diff
changeset
|
5195 self.assertEqual(0, CountAnswers({ |
|
a2719263fd04
test_study_series_find_inconsistency
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
262
diff
changeset
|
5196 'Level' : 'Series', |
|
a2719263fd04
test_study_series_find_inconsistency
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
262
diff
changeset
|
5197 'Query' : { |
|
a2719263fd04
test_study_series_find_inconsistency
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
262
diff
changeset
|
5198 'ProtocolName' : '*MISMATCHED^VALUE*' |
|
a2719263fd04
test_study_series_find_inconsistency
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
262
diff
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|
5199 }, |
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5200 'Normalize' : normalize, |
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5201 })) |
|
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5202 |
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5203 self.assertEqual(1, CountAnswers({ |
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5204 'Level' : 'Study', |
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5205 'Query' : { |
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5206 'ProtocolName' : '' # Universal matching |
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5207 }, |
|
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5208 'Normalize' : normalize, |
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5209 })) |
|
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5210 |
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5211 |
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5212 ## |
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5213 ## "StudyInstanceUID" is present, and has VR "UI" => wildcard is not allowed |
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5214 ## |
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5215 |
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5216 for level in [ 'Study', 'Series' ] : |
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5217 for normalize in [ True, False ]: |
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5218 self.assertEqual(1, CountAnswers({ |
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5219 'Level' : level, |
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5220 'Query' : { |
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5221 'StudyInstanceUID' : '' # Universal matching |
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5222 }, |
|
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5223 'Normalize' : normalize, |
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5224 })) |
|
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5225 self.assertEqual(0, CountAnswers({ |
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5226 'Level' : level, |
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5227 'Query' : { |
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5228 'StudyInstanceUID' : 'MISMATCHED^VALUE' |
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5229 }, |
|
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5230 'Normalize' : normalize, |
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5231 })) |
|
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5232 self.assertEqual(1, CountAnswers({ |
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5233 'Level' : level, |
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5234 'Query' : { |
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5235 'StudyInstanceUID' : '4.5.6' # This is the actual value |
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5236 }, |
|
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5237 'Normalize' : normalize, |
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5238 })) |
|
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5239 |
| 269 | 5240 # Wildcard matching is not allowed for this VR |
|
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5241 # This test fails on Orthanc <= 1.5.8 |
| 269 | 5242 self.assertRaises(Exception, lambda: CountAnswers({ |
|
263
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5243 'Level' : level, |
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5244 'Query' : { |
| 269 | 5245 'StudyInstanceUID' : '*' |
|
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5246 }, |
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5247 'Normalize' : normalize, |
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5248 })) |
| 265 | 5249 |
| 5250 | |
| 5251 def test_rendered(self): | |
| 5252 # New in Orthanc 1.6.0 | |
| 5253 i = UploadInstance(_REMOTE, 'ColorTestMalaterre.dcm')['ID'] | |
| 5254 im = GetImage(_REMOTE, '/instances/%s/rendered' % i) | |
| 5255 self.assertEqual("RGB", im.mode) | |
| 5256 self.assertEqual(41, im.size[0]) | |
| 5257 self.assertEqual(41, im.size[1]) | |
| 5258 | |
| 5259 # http://effbot.org/zone/pil-comparing-images.htm | |
| 5260 truth = Image.open(GetDatabasePath('ColorTestMalaterre.png')) | |
| 5261 self.assertTrue(ImageChops.difference(im, truth).getbbox() is None) | |
| 5262 | |
| 5263 im = GetImage(_REMOTE, '/instances/%s/rendered?width=10' % i) | |
| 5264 self.assertEqual("RGB", im.mode) | |
| 5265 self.assertEqual(10, im.size[0]) | |
| 5266 self.assertEqual(10, im.size[1]) | |
| 5267 | |
| 5268 im = GetImage(_REMOTE, '/instances/%s/rendered?height=10' % i) | |
| 5269 self.assertEqual("RGB", im.mode) | |
| 5270 self.assertEqual(10, im.size[0]) | |
| 5271 self.assertEqual(10, im.size[1]) | |
| 5272 | |
| 5273 im = GetImage(_REMOTE, '/instances/%s/rendered?height=128' % i) | |
| 5274 self.assertEqual("RGB", im.mode) | |
| 5275 self.assertEqual(128, im.size[0]) | |
| 5276 self.assertEqual(128, im.size[1]) | |
| 5277 | |
| 5278 im = GetImage(_REMOTE, '/instances/%s/rendered?height=10&smooth=0' % i) | |
| 5279 self.assertEqual("RGB", im.mode) | |
| 5280 self.assertEqual(10, im.size[0]) | |
| 5281 self.assertEqual(10, im.size[1]) | |
| 5282 | |
| 5283 im = GetImage(_REMOTE, '/instances/%s/rendered?height=10&smooth=1' % i) | |
| 5284 self.assertEqual("RGB", im.mode) | |
| 5285 self.assertEqual(10, im.size[0]) | |
| 5286 self.assertEqual(10, im.size[1]) | |
| 5287 | |
| 5288 im = GetImage(_REMOTE, '/instances/%s/rendered?height=5&width=10' % i) | |
| 5289 self.assertEqual("RGB", im.mode) | |
| 5290 self.assertEqual(5, im.size[0]) | |
| 5291 self.assertEqual(5, im.size[1]) | |
| 5292 | |
| 5293 | |
| 5294 # Grayscale image | |
| 5295 i = UploadInstance(_REMOTE, 'Brainix/Flair/IM-0001-0001.dcm')['ID'] | |
| 5296 im = GetImage(_REMOTE, '/instances/%s/rendered' % i) | |
| 5297 self.assertEqual("L", im.mode) | |
| 5298 self.assertEqual(288, im.size[0]) | |
| 5299 self.assertEqual(288, im.size[1]) | |
| 5300 self.assertEqual(0, im.getpixel((0, 0))) | |
| 5301 | |
| 5302 # Those are the original windowing parameters that are written | |
| 5303 # inside the DICOM file | |
| 5304 im2 = GetImage(_REMOTE, '/instances/%s/rendered?window-center=248.009544468547&window-width=431.351843817788' % i) | |
| 5305 self.assertEqual("L", im2.mode) | |
| 5306 self.assertEqual(288, im2.size[0]) | |
| 5307 self.assertEqual(288, im2.size[1]) | |
| 5308 self.assertTrue(ImageChops.difference(im, im2).getbbox() is None) | |
| 5309 | |
| 5310 im = GetImage(_REMOTE, '/instances/%s/rendered?width=512&smooth=0' % i) | |
| 5311 self.assertEqual("L", im.mode) | |
| 5312 self.assertEqual(512, im.size[0]) | |
| 5313 self.assertEqual(512, im.size[1]) | |
| 5314 | |
| 5315 im = GetImage(_REMOTE, '/instances/%s/rendered?width=10&smooth=0' % i) | |
| 5316 self.assertEqual("L", im.mode) | |
| 5317 self.assertEqual(10, im.size[0]) | |
| 5318 self.assertEqual(10, im.size[1]) | |
| 5319 | |
| 5320 im = GetImage(_REMOTE, '/instances/%s/rendered?width=10&smooth=1' % i) | |
| 5321 self.assertEqual("L", im.mode) | |
| 5322 self.assertEqual(10, im.size[0]) | |
| 5323 self.assertEqual(10, im.size[1]) | |
| 5324 | |
| 5325 im = GetImage(_REMOTE, '/instances/%s/rendered?width=1&window-center=-1000' % i) | |
| 5326 self.assertEqual("L", im.mode) | |
| 5327 self.assertEqual(1, im.size[0]) | |
| 5328 self.assertEqual(1, im.size[1]) | |
| 5329 self.assertEqual(255, im.getpixel((0, 0))) | |
| 5330 | |
| 5331 im = GetImage(_REMOTE, '/instances/%s/rendered?width=1&window-center=1000' % i) | |
| 5332 self.assertEqual("L", im.mode) | |
| 5333 self.assertEqual(1, im.size[0]) | |
| 5334 self.assertEqual(1, im.size[1]) | |
| 5335 self.assertEqual(0, im.getpixel((0, 0))) | |
| 5336 | |
| 5337 | |
| 5338 # Test monochrome 1 | |
| 5339 i = UploadInstance(_REMOTE, 'Issue44/Monochrome1.dcm')['ID'] | |
| 5340 im = GetImage(_REMOTE, '/instances/%s/rendered' % i) | |
| 5341 self.assertEqual("L", im.mode) | |
| 5342 self.assertEqual(2010, im.size[0]) | |
| 5343 self.assertEqual(2446, im.size[1]) | |
| 5344 self.assertEqual(0, im.getpixel((0, 0))) | |
| 5345 im = GetImage(_REMOTE, '/instances/%s/rendered?width=20' % i) | |
| 5346 self.assertEqual("L", im.mode) | |
| 5347 self.assertEqual(20, im.size[0]) | |
| 5348 self.assertEqual(24, im.size[1]) | |
| 5349 im = GetImage(_REMOTE, '/instances/%s/rendered?height=24' % i) | |
| 5350 self.assertEqual("L", im.mode) | |
| 5351 self.assertEqual(20, im.size[0]) | |
| 5352 self.assertEqual(24, im.size[1]) | |
| 5353 im = GetImage(_REMOTE, '/instances/%s/rendered?width=10&height=24' % i) | |
| 5354 self.assertEqual("L", im.mode) | |
| 5355 self.assertEqual(10, im.size[0]) | |
| 5356 self.assertEqual(12, im.size[1]) | |
| 5357 im = GetImage(_REMOTE, '/instances/%s/rendered?width=40&height=24' % i) | |
| 5358 self.assertEqual("L", im.mode) | |
| 5359 self.assertEqual(20, im.size[0]) | |
| 5360 self.assertEqual(24, im.size[1]) | |
|
268
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5361 |
|
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5362 |
|
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5363 def test_bitbucket_issue_154(self): |
|
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5364 # "Matching against list of UID-s by C-MOVE" |
| 319 | 5365 # https://bugs.orthanc-server.com/show_bug.cgi?id=154 |
|
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5366 a = UploadInstance(_REMOTE, 'Issue154-d1.dcm') ['ID'] |
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5367 b = UploadInstance(_REMOTE, 'Issue154-d2.dcm') ['ID'] |
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5368 |
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5369 study = '1.2.826.0.1.3680043.8.498.35214236271657363033644818354280454731' |
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5370 series1 = '1.2.826.0.1.3680043.8.498.12243321927795467590791662266352305113' |
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5371 series2 = '1.2.826.0.1.3680043.8.498.43769499931624584079690260699536473555' |
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5372 |
|
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5373 # C-FIND is working on list of UIDs |
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5374 i = CallFindScu([ '-k', 'QueryRetrieveLevel=SERIES', |
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5375 '-k', 'StudyInstanceUID=%s' % study, |
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5376 '-k', 'SeriesInstanceUID=%s\\%s' % (series1, series2) ]) |
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5377 series = re.findall('\(0020,000e\).*?\[(.*?)\]', i) |
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5378 self.assertEqual(2, len(series)) |
|
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5379 self.assertTrue(series1 in series) |
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5380 self.assertTrue(series2 in series) |
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5381 |
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5382 # Individual retrieval is working in Orthanc < 1.6.0 |
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5383 self.assertEqual(0, len(DoGet(_LOCAL, '/instances'))) |
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5384 self.assertTrue(MonitorJob(_REMOTE, lambda: CallMoveScu([ |
|
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5385 '--study', '-k', 'QueryRetrieveLevel=SERIES', |
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5386 '-k', 'StudyInstanceUID=%s' % study, |
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5387 '-k', 'SeriesInstanceUID=%s' % series1, |
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5388 ]))) |
|
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5389 self.assertTrue(MonitorJob(_REMOTE, lambda: CallMoveScu([ |
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5390 '--study', '-k', 'QueryRetrieveLevel=SERIES', |
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5391 '-k', 'StudyInstanceUID=%s' % study, |
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5392 '-k', 'SeriesInstanceUID=%s' % series2, |
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5393 ]))) |
|
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5394 self.assertEqual(2, len(DoGet(_LOCAL, '/instances'))) |
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5395 |
|
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|
5396 DropOrthanc(_LOCAL) |
|
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5397 |
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5398 # But list matching is working only in Orthanc >= 1.6.0 |
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5399 self.assertEqual(0, len(DoGet(_LOCAL, '/instances'))) |
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5400 self.assertTrue(MonitorJob(_REMOTE, lambda: CallMoveScu([ |
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5401 '--study', '-k', 'QueryRetrieveLevel=SERIES', |
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5402 '-k', 'StudyInstanceUID=%s' % study, |
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5403 '-k', 'SeriesInstanceUID=%s\\%s' % (series1, series2), |
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5404 ]))) |
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5405 self.assertEqual(2, len(DoGet(_LOCAL, '/instances'))) |
|
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5406 |
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5407 |
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5408 def test_storage_commitment_api(self): |
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5409 # Storage commitment is available since Orthanc 1.6.0 |
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5410 |
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5411 def WaitTransaction(uid): |
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5412 while True: |
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5413 s = DoGet(_REMOTE, '/storage-commitment/%s' % uid) |
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5414 if s['Status'] != 'Pending': |
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5415 return s |
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5416 else: |
|
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5417 time.sleep(0.01) |
|
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5418 |
| 281 | 5419 instance = UploadInstance(_REMOTE, 'DummyCT.dcm') |
|
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5420 sopClassUid = '1.2.840.10008.5.1.4.1.1.4' |
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5421 sopInstanceUid = '1.2.840.113619.2.176.2025.1499492.7040.1171286242.109' |
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5422 |
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5423 # Against self |
| 281 | 5424 transaction = DoPost(_REMOTE, '/modalities/self/storage-commitment', { |
| 5425 "DicomInstances" : [ [ sopClassUid, sopInstanceUid ] ], | |
| 5426 }) ['ID'] | |
|
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5427 self.assertTrue(transaction.startswith('2.25.')) |
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5428 |
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5429 result = WaitTransaction(transaction) |
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5430 self.assertEqual('ORTHANC', result['RemoteAET']) |
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5431 self.assertEqual('Success', result['Status']) |
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5432 self.assertEqual(1, len(result['Success'])) |
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5433 self.assertEqual(0, len(result['Failures'])) |
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5434 self.assertEqual(sopClassUid, result['Success'][0]['SOPClassUID']) |
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5435 self.assertEqual(sopInstanceUid, result['Success'][0]['SOPInstanceUID']) |
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5436 |
| 281 | 5437 tmp = DoPost(_REMOTE, '/modalities/self/storage-commitment', { |
| 5438 "DicomInstances" : [ | |
| 5439 { 'SOPClassUID' : sopClassUid, | |
| 5440 'SOPInstanceUID' : sopInstanceUid }, | |
| 5441 ], | |
| 5442 }) | |
| 5443 self.assertEqual(tmp['Path'], '/storage-commitment/%s' % tmp['ID']) | |
| 5444 self.assertEqual(result, WaitTransaction(transaction)) | |
| 5445 | |
| 5446 tmp = DoPost(_REMOTE, '/modalities/self/storage-commitment', { | |
| 5447 "Resources" : [ | |
| 5448 instance['ID'], | |
| 5449 instance['ParentSeries'], | |
| 5450 instance['ParentStudy'], | |
| 5451 instance['ParentPatient'], | |
| 5452 ] | |
| 5453 }) | |
|
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5454 self.assertEqual(tmp['Path'], '/storage-commitment/%s' % tmp['ID']) |
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5455 self.assertEqual(result, WaitTransaction(transaction)) |
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5456 |
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5457 |
| 281 | 5458 transaction = DoPost(_REMOTE, '/modalities/self/storage-commitment', { |
| 5459 "DicomInstances" : [ | |
| 5460 [ 'nope', 'nope2' ], | |
| 5461 [ sopClassUid, sopInstanceUid ], | |
| 5462 ], | |
| 5463 }) ['ID'] | |
|
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5464 self.assertTrue(transaction.startswith('2.25.')) |
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5465 |
|
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|
5466 result = WaitTransaction(transaction) |
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|
5467 self.assertEqual('ORTHANC', result['RemoteAET']) |
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|
5468 self.assertEqual('Failure', result['Status']) |
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|
5469 self.assertEqual(1, len(result['Success'])) |
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|
5470 self.assertEqual(1, len(result['Failures'])) |
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|
5471 self.assertEqual(sopClassUid, result['Success'][0]['SOPClassUID']) |
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|
5472 self.assertEqual(sopInstanceUid, result['Success'][0]['SOPInstanceUID']) |
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|
5473 self.assertEqual('nope', result['Failures'][0]['SOPClassUID']) |
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|
5474 self.assertEqual('nope2', result['Failures'][0]['SOPInstanceUID']) |
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|
5475 self.assertEqual(274, result['Failures'][0]['FailureReason']) |
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|
5476 |
|
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|
5477 # Cannot remove items from a failed storage commitment transaction |
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|
5478 self.assertRaises(Exception, lambda: |
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|
5479 DoPost(_REMOTE, '/storage-commitment/%s/remove' % transaction)) |
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|
5480 |
|
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|
5481 |
|
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|
5482 # Against Orthanc 0.8.6, that does not support storage commitment |
|
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|
5483 self.assertRaises(Exception, lambda: |
| 281 | 5484 DoPost(_REMOTE, '/modalities/orthanctest/storage-commitment', { |
| 5485 "DicomInstances" : [ | |
| 5486 [ sopClassUid, sopInstanceUid ], | |
| 5487 ] | |
| 5488 })) | |
|
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|
5489 |
|
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changeset
|
5490 |
|
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|
5491 |
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|
5492 def test_storage_commitment_store(self): |
|
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5493 # Storage commitment is available since Orthanc 1.6.0 |
|
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|
5494 |
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|
5495 def WaitTransaction(uid): |
|
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|
5496 while True: |
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|
5497 s = DoGet(_REMOTE, '/storage-commitment/%s' % uid) |
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|
5498 if s['Status'] != 'Pending': |
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|
5499 return s |
|
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|
5500 else: |
|
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|
5501 time.sleep(0.01) |
|
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|
5502 |
|
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|
5503 i = UploadInstance(_REMOTE, 'DummyCT.dcm')['ID'] |
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|
5504 self.assertEqual(1, len(DoGet(_REMOTE, '/instances'))) |
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|
5505 self.assertEqual(0, len(DoGet(_LOCAL, '/instances'))) |
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|
5506 |
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5507 # The Orthanc 0.8.6 from "_LOCAL" does not support storage commitment |
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|
5508 self.assertRaises(Exception, lambda: DoPost(_REMOTE, '/modalities/orthanctest/store', { |
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5509 'Resources' : [ i ], |
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5510 'StorageCommitment' : True, |
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5511 })) |
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5512 |
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|
5513 j = DoPost(_REMOTE, '/modalities/orthanctest/store', { |
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5514 'Resources' : [ i ], |
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5515 'StorageCommitment' : False, |
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5516 }) |
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5517 self.assertEqual(1, len(DoGet(_LOCAL, '/instances'))) |
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5518 |
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5519 j = DoPost(_REMOTE, '/modalities/self/store', { |
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5520 'Resources' : [ i ], |
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5521 'StorageCommitment' : True, |
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5522 }) |
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5523 |
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5524 transaction = j['StorageCommitmentTransactionUID'] |
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5525 self.assertTrue(transaction.startswith('2.25.')) |
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5526 |
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|
5527 result = WaitTransaction(transaction) |
|
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Sebastien Jodogne <s.jodogne@gmail.com>
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279
diff
changeset
|
5528 self.assertEqual('ORTHANC', result['RemoteAET']) |
|
5daa3896981c
testing storage commitment reports
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279
diff
changeset
|
5529 self.assertEqual('Success', result['Status']) |
|
5daa3896981c
testing storage commitment reports
Sebastien Jodogne <s.jodogne@gmail.com>
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279
diff
changeset
|
5530 self.assertEqual(1, len(result['Success'])) |
|
5daa3896981c
testing storage commitment reports
Sebastien Jodogne <s.jodogne@gmail.com>
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279
diff
changeset
|
5531 self.assertEqual(0, len(result['Failures'])) |
|
5daa3896981c
testing storage commitment reports
Sebastien Jodogne <s.jodogne@gmail.com>
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279
diff
changeset
|
5532 self.assertEqual('1.2.840.10008.5.1.4.1.1.4', result['Success'][0]['SOPClassUID']) |
|
5daa3896981c
testing storage commitment reports
Sebastien Jodogne <s.jodogne@gmail.com>
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279
diff
changeset
|
5533 self.assertEqual('1.2.840.113619.2.176.2025.1499492.7040.1171286242.109', |
|
5daa3896981c
testing storage commitment reports
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
279
diff
changeset
|
5534 result['Success'][0]['SOPInstanceUID']) |
|
5daa3896981c
testing storage commitment reports
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
279
diff
changeset
|
5535 |
|
5daa3896981c
testing storage commitment reports
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
279
diff
changeset
|
5536 self.assertEqual(1, len(DoGet(_REMOTE, '/instances'))) |
|
5daa3896981c
testing storage commitment reports
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
279
diff
changeset
|
5537 DoPost(_REMOTE, '/storage-commitment/%s/remove' % transaction) |
|
5daa3896981c
testing storage commitment reports
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
279
diff
changeset
|
5538 self.assertEqual(0, len(DoGet(_REMOTE, '/instances'))) |
|
285
281a32ecc5c1
test_store_straight
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
281
diff
changeset
|
5539 |
|
281a32ecc5c1
test_store_straight
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
281
diff
changeset
|
5540 |
|
281a32ecc5c1
test_store_straight
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
281
diff
changeset
|
5541 def test_store_straight(self): # New in Orthanc 1.6.1 |
|
281a32ecc5c1
test_store_straight
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
281
diff
changeset
|
5542 self.assertEqual(0, len(DoGet(_LOCAL, '/instances'))) |
|
281a32ecc5c1
test_store_straight
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
281
diff
changeset
|
5543 self.assertEqual(0, len(DoGet(_REMOTE, '/instances'))) |
|
281a32ecc5c1
test_store_straight
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
281
diff
changeset
|
5544 |
|
281a32ecc5c1
test_store_straight
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
281
diff
changeset
|
5545 with open(GetDatabasePath('DummyCT.dcm'), 'rb') as f: |
|
281a32ecc5c1
test_store_straight
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
281
diff
changeset
|
5546 dicom = f.read() |
|
281a32ecc5c1
test_store_straight
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
281
diff
changeset
|
5547 |
|
281a32ecc5c1
test_store_straight
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
281
diff
changeset
|
5548 self.assertRaises(Exception, lambda: DoPost( |
|
281a32ecc5c1
test_store_straight
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
281
diff
changeset
|
5549 _REMOTE, '/modalities/orthanctest/store-straight', 'nope', 'nope')) |
|
281a32ecc5c1
test_store_straight
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
281
diff
changeset
|
5550 |
|
281a32ecc5c1
test_store_straight
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
281
diff
changeset
|
5551 answer = DoPost(_REMOTE, '/modalities/orthanctest/store-straight', dicom, 'nope') |
|
281a32ecc5c1
test_store_straight
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
281
diff
changeset
|
5552 |
|
281a32ecc5c1
test_store_straight
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
281
diff
changeset
|
5553 self.assertEqual('1.2.840.10008.5.1.4.1.1.4', |
|
281a32ecc5c1
test_store_straight
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
281
diff
changeset
|
5554 answer['SOPClassUID']) |
|
281a32ecc5c1
test_store_straight
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
281
diff
changeset
|
5555 self.assertEqual('1.2.840.113619.2.176.2025.1499492.7040.1171286242.109', |
|
281a32ecc5c1
test_store_straight
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
281
diff
changeset
|
5556 answer['SOPInstanceUID']) |
|
281a32ecc5c1
test_store_straight
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
281
diff
changeset
|
5557 |
|
281a32ecc5c1
test_store_straight
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
281
diff
changeset
|
5558 self.assertEqual(1, len(DoGet(_LOCAL, '/instances'))) |
|
281a32ecc5c1
test_store_straight
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
281
diff
changeset
|
5559 self.assertEqual(0, len(DoGet(_REMOTE, '/instances'))) |
|
289
4a70411ac9ad
test_storescu_transcoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
285
diff
changeset
|
5560 |
|
4a70411ac9ad
test_storescu_transcoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
285
diff
changeset
|
5561 |
|
4a70411ac9ad
test_storescu_transcoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
285
diff
changeset
|
5562 def test_storescu_transcoding(self): # New in Orthanc 1.7.0 |
|
4a70411ac9ad
test_storescu_transcoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
285
diff
changeset
|
5563 # Add a RLE-encoded DICOM file |
|
4a70411ac9ad
test_storescu_transcoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
285
diff
changeset
|
5564 i = UploadInstance(_REMOTE, 'TransferSyntaxes/1.2.840.10008.1.2.5.dcm')['ID'] |
|
4a70411ac9ad
test_storescu_transcoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
285
diff
changeset
|
5565 self.assertEqual(0, len(DoGet(_LOCAL, '/instances'))) |
|
4a70411ac9ad
test_storescu_transcoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
285
diff
changeset
|
5566 self.assertEqual(1, len(DoGet(_REMOTE, '/instances'))) |
|
4a70411ac9ad
test_storescu_transcoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
285
diff
changeset
|
5567 rleSize = len(DoGet(_REMOTE, '/instances/%s/file' % i)) |
|
4a70411ac9ad
test_storescu_transcoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
285
diff
changeset
|
5568 |
|
4a70411ac9ad
test_storescu_transcoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
285
diff
changeset
|
5569 # Export the instance, with transcoding: "_REMOTE" is the |
|
4a70411ac9ad
test_storescu_transcoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
285
diff
changeset
|
5570 # Orthanc server being tested |
|
4a70411ac9ad
test_storescu_transcoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
285
diff
changeset
|
5571 try: |
|
4a70411ac9ad
test_storescu_transcoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
285
diff
changeset
|
5572 DoDelete(_REMOTE, '/modalities/toto') |
|
4a70411ac9ad
test_storescu_transcoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
285
diff
changeset
|
5573 except: |
|
4a70411ac9ad
test_storescu_transcoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
285
diff
changeset
|
5574 pass |
|
4a70411ac9ad
test_storescu_transcoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
285
diff
changeset
|
5575 |
|
4a70411ac9ad
test_storescu_transcoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
285
diff
changeset
|
5576 params = DoGet(_REMOTE, '/modalities?expand') ['orthanctest'] |
|
4a70411ac9ad
test_storescu_transcoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
285
diff
changeset
|
5577 DoPut(_REMOTE, '/modalities/toto', params) |
|
4a70411ac9ad
test_storescu_transcoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
285
diff
changeset
|
5578 DoPost(_REMOTE, '/modalities/toto/store', str(i), 'text/plain') |
|
4a70411ac9ad
test_storescu_transcoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
285
diff
changeset
|
5579 j = DoGet(_LOCAL, '/instances') |
|
4a70411ac9ad
test_storescu_transcoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
285
diff
changeset
|
5580 self.assertEqual(1, len(j)) |
|
4a70411ac9ad
test_storescu_transcoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
285
diff
changeset
|
5581 uncompressedSize = len(DoGet(_LOCAL, '/instances/%s/file' % j[0])) |
|
4a70411ac9ad
test_storescu_transcoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
285
diff
changeset
|
5582 self.assertTrue(uncompressedSize > rleSize / 2) |
|
4a70411ac9ad
test_storescu_transcoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
285
diff
changeset
|
5583 |
|
4a70411ac9ad
test_storescu_transcoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
285
diff
changeset
|
5584 # Export, with transcoding disabled => this fails |
|
4a70411ac9ad
test_storescu_transcoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
285
diff
changeset
|
5585 params['AllowTranscoding'] = False |
|
4a70411ac9ad
test_storescu_transcoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
285
diff
changeset
|
5586 DoPut(_REMOTE, '/modalities/toto', params) |
|
4a70411ac9ad
test_storescu_transcoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
285
diff
changeset
|
5587 self.assertRaises(Exception, lambda: DoPost(_REMOTE, '/modalities/toto/store', str(i), 'text/plain')) |
|
290
b5333f87065b
test_bitbucket_issue_169
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
289
diff
changeset
|
5588 |
|
b5333f87065b
test_bitbucket_issue_169
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
289
diff
changeset
|
5589 |
|
b5333f87065b
test_bitbucket_issue_169
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
289
diff
changeset
|
5590 def test_bitbucket_issue_169(self): |
|
b5333f87065b
test_bitbucket_issue_169
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
289
diff
changeset
|
5591 with open(GetDatabasePath('Issue169.dcm.bz2'), 'rb') as f: |
|
b5333f87065b
test_bitbucket_issue_169
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
289
diff
changeset
|
5592 dicom = bz2.decompress(f.read()) |
|
b5333f87065b
test_bitbucket_issue_169
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
289
diff
changeset
|
5593 |
|
b5333f87065b
test_bitbucket_issue_169
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
289
diff
changeset
|
5594 self.assertEqual('1.2.840.10008.1.2.1', GetTransferSyntax(dicom)) |
|
b5333f87065b
test_bitbucket_issue_169
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
289
diff
changeset
|
5595 |
|
b5333f87065b
test_bitbucket_issue_169
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
289
diff
changeset
|
5596 self.assertEqual(44350560, len(dicom)) |
|
b5333f87065b
test_bitbucket_issue_169
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
289
diff
changeset
|
5597 i = DoPost(_REMOTE, '/instances', dicom, 'application/dicom') ['ID'] |
|
b5333f87065b
test_bitbucket_issue_169
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
289
diff
changeset
|
5598 |
|
b5333f87065b
test_bitbucket_issue_169
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
289
diff
changeset
|
5599 tags = DoGet(_REMOTE, '/instances/%s/tags' % i) |
|
b5333f87065b
test_bitbucket_issue_169
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
289
diff
changeset
|
5600 self.assertEqual('NORMAL', tags['1337,1001']['Value']) |
|
b5333f87065b
test_bitbucket_issue_169
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
289
diff
changeset
|
5601 |
|
b5333f87065b
test_bitbucket_issue_169
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
289
diff
changeset
|
5602 self.assertEqual(0, len(DoGet(_LOCAL, '/instances'))) |
|
b5333f87065b
test_bitbucket_issue_169
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
289
diff
changeset
|
5603 DoPost(_REMOTE, '/modalities/orthanctest/store', str(i), 'text/plain') |
|
b5333f87065b
test_bitbucket_issue_169
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
289
diff
changeset
|
5604 j = DoGet(_LOCAL, '/instances') |
|
b5333f87065b
test_bitbucket_issue_169
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
289
diff
changeset
|
5605 self.assertEqual(1, len(j)) |
|
b5333f87065b
test_bitbucket_issue_169
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
289
diff
changeset
|
5606 |
|
b5333f87065b
test_bitbucket_issue_169
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
289
diff
changeset
|
5607 # In Orthanc <= 1.6.1, transfer syntax changed from "Explicit |
|
b5333f87065b
test_bitbucket_issue_169
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
289
diff
changeset
|
5608 # VR Little Endian" (1.2.840.10008.1.2.1) to "Implicit VR |
|
b5333f87065b
test_bitbucket_issue_169
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
289
diff
changeset
|
5609 # Little Endian" (1.2.840.10008.1.2) |
|
291
cfa785074c64
test_modify_transcode
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
290
diff
changeset
|
5610 self.assertEqual('1.2.840.10008.1.2.1', GetTransferSyntax( |
|
cfa785074c64
test_modify_transcode
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
290
diff
changeset
|
5611 DoGet(_LOCAL, '/instances/%s/file' % j[0]))) |
|
290
b5333f87065b
test_bitbucket_issue_169
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
289
diff
changeset
|
5612 |
|
b5333f87065b
test_bitbucket_issue_169
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
289
diff
changeset
|
5613 # In Orthanc <= 1.6.1, the value of the private tags was lost |
|
b5333f87065b
test_bitbucket_issue_169
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
289
diff
changeset
|
5614 # because of this transcoding |
|
b5333f87065b
test_bitbucket_issue_169
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
289
diff
changeset
|
5615 tags = DoGet(_LOCAL, '/instances/%s/tags' % j[0]) |
|
b5333f87065b
test_bitbucket_issue_169
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
289
diff
changeset
|
5616 self.assertEqual('NORMAL', tags['1337,1001']['Value']) |
|
291
cfa785074c64
test_modify_transcode
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
290
diff
changeset
|
5617 |
|
cfa785074c64
test_modify_transcode
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
290
diff
changeset
|
5618 |
|
302
22b6dd0f8c84
test_modify_transcode_study
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
301
diff
changeset
|
5619 def test_modify_transcode_instance(self): |
|
291
cfa785074c64
test_modify_transcode
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
290
diff
changeset
|
5620 i = UploadInstance(_REMOTE, 'KarstenHilbertRF.dcm')['ID'] |
|
cfa785074c64
test_modify_transcode
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
290
diff
changeset
|
5621 self.assertEqual('1.2.840.10008.1.2.1', GetTransferSyntax( |
|
cfa785074c64
test_modify_transcode
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
290
diff
changeset
|
5622 DoGet(_REMOTE, '/instances/%s/file' % i))) |
|
cfa785074c64
test_modify_transcode
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
290
diff
changeset
|
5623 |
|
299
c2144cf4bd83
HasGdcmPlugin() test
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
293
diff
changeset
|
5624 a = ExtractDicomTags(DoGet(_REMOTE, '/instances/%s/file' % i), [ 'SOPInstanceUID' ]) [0] |
|
c2144cf4bd83
HasGdcmPlugin() test
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
293
diff
changeset
|
5625 self.assertTrue(len(a) > 20) |
|
c2144cf4bd83
HasGdcmPlugin() test
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
293
diff
changeset
|
5626 |
|
c2144cf4bd83
HasGdcmPlugin() test
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
293
diff
changeset
|
5627 SYNTAXES = [ |
|
c2144cf4bd83
HasGdcmPlugin() test
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
293
diff
changeset
|
5628 '1.2.840.10008.1.2', |
|
c2144cf4bd83
HasGdcmPlugin() test
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
293
diff
changeset
|
5629 '1.2.840.10008.1.2.1', |
|
300
d6c2eb5a2603
disabling test on Deflated Explicit VR Little Endian
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
299
diff
changeset
|
5630 #'1.2.840.10008.1.2.1.99', # Deflated Explicit VR Little Endian (cannot be decoded in debug mode if Orthanc is statically linked against DCMTK 3.6.5) |
|
299
c2144cf4bd83
HasGdcmPlugin() test
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
293
diff
changeset
|
5631 '1.2.840.10008.1.2.2', |
|
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HasGdcmPlugin() test
Sebastien Jodogne <s.jodogne@gmail.com>
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293
diff
changeset
|
5632 '1.2.840.10008.1.2.4.50', |
|
c2144cf4bd83
HasGdcmPlugin() test
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
293
diff
changeset
|
5633 '1.2.840.10008.1.2.4.51', |
|
c2144cf4bd83
HasGdcmPlugin() test
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
293
diff
changeset
|
5634 '1.2.840.10008.1.2.4.57', |
|
c2144cf4bd83
HasGdcmPlugin() test
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
293
diff
changeset
|
5635 '1.2.840.10008.1.2.4.70', |
|
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HasGdcmPlugin() test
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
293
diff
changeset
|
5636 ] |
|
c2144cf4bd83
HasGdcmPlugin() test
Sebastien Jodogne <s.jodogne@gmail.com>
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293
diff
changeset
|
5637 |
| 304 | 5638 if HasGdcmPlugin(_REMOTE): |
|
299
c2144cf4bd83
HasGdcmPlugin() test
Sebastien Jodogne <s.jodogne@gmail.com>
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diff
changeset
|
5639 SYNTAXES = SYNTAXES + [ |
|
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HasGdcmPlugin() test
Sebastien Jodogne <s.jodogne@gmail.com>
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293
diff
changeset
|
5640 '1.2.840.10008.1.2.4.80', # This makes DCMTK 3.6.2 crash |
|
c2144cf4bd83
HasGdcmPlugin() test
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
293
diff
changeset
|
5641 '1.2.840.10008.1.2.4.81', # This makes DCMTK 3.6.2 crash |
|
c2144cf4bd83
HasGdcmPlugin() test
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
293
diff
changeset
|
5642 '1.2.840.10008.1.2.4.90', # JPEG2k, unavailable without GDCM |
|
c2144cf4bd83
HasGdcmPlugin() test
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
293
diff
changeset
|
5643 '1.2.840.10008.1.2.4.91', # JPEG2k, unavailable without GDCM |
|
c2144cf4bd83
HasGdcmPlugin() test
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
293
diff
changeset
|
5644 ] |
|
c2144cf4bd83
HasGdcmPlugin() test
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
293
diff
changeset
|
5645 |
|
c2144cf4bd83
HasGdcmPlugin() test
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
293
diff
changeset
|
5646 for syntax in SYNTAXES: |
|
291
cfa785074c64
test_modify_transcode
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
290
diff
changeset
|
5647 transcoded = DoPost(_REMOTE, '/instances/%s/modify' % i, { |
|
cfa785074c64
test_modify_transcode
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
290
diff
changeset
|
5648 'Transcode' : syntax, |
|
299
c2144cf4bd83
HasGdcmPlugin() test
Sebastien Jodogne <s.jodogne@gmail.com>
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diff
changeset
|
5649 'Keep' : [ 'SOPInstanceUID' ], |
|
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HasGdcmPlugin() test
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
293
diff
changeset
|
5650 'Force' : True, |
|
291
cfa785074c64
test_modify_transcode
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
290
diff
changeset
|
5651 }) |
|
cfa785074c64
test_modify_transcode
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
290
diff
changeset
|
5652 |
|
cfa785074c64
test_modify_transcode
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
290
diff
changeset
|
5653 self.assertEqual(syntax, GetTransferSyntax(transcoded)) |
|
292
e1827a4f5d3b
test_archive_transcode
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
291
diff
changeset
|
5654 |
|
299
c2144cf4bd83
HasGdcmPlugin() test
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
293
diff
changeset
|
5655 b = ExtractDicomTags(transcoded, [ 'SOPInstanceUID' ]) [0] |
|
c2144cf4bd83
HasGdcmPlugin() test
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
293
diff
changeset
|
5656 self.assertTrue(len(b) > 20) |
|
c2144cf4bd83
HasGdcmPlugin() test
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
293
diff
changeset
|
5657 if syntax in [ '1.2.840.10008.1.2.4.50', |
|
c2144cf4bd83
HasGdcmPlugin() test
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
293
diff
changeset
|
5658 '1.2.840.10008.1.2.4.51', |
|
c2144cf4bd83
HasGdcmPlugin() test
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
293
diff
changeset
|
5659 '1.2.840.10008.1.2.4.81', |
|
c2144cf4bd83
HasGdcmPlugin() test
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
293
diff
changeset
|
5660 '1.2.840.10008.1.2.4.91' ]: |
|
c2144cf4bd83
HasGdcmPlugin() test
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
293
diff
changeset
|
5661 # Lossy transcoding: The SOP instance UID must have changed |
|
c2144cf4bd83
HasGdcmPlugin() test
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
293
diff
changeset
|
5662 self.assertNotEqual(a, b) |
|
c2144cf4bd83
HasGdcmPlugin() test
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
293
diff
changeset
|
5663 else: |
|
c2144cf4bd83
HasGdcmPlugin() test
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
293
diff
changeset
|
5664 self.assertEqual(a, b) |
|
292
e1827a4f5d3b
test_archive_transcode
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
291
diff
changeset
|
5665 |
|
e1827a4f5d3b
test_archive_transcode
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
291
diff
changeset
|
5666 def test_archive_transcode(self): |
|
e1827a4f5d3b
test_archive_transcode
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
291
diff
changeset
|
5667 info = UploadInstance(_REMOTE, 'KarstenHilbertRF.dcm') |
|
e1827a4f5d3b
test_archive_transcode
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
291
diff
changeset
|
5668 |
|
293
032722c3e919
extended test_archive_transcode
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
292
diff
changeset
|
5669 # GET on "/media" |
|
292
e1827a4f5d3b
test_archive_transcode
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
291
diff
changeset
|
5670 z = GetArchive(_REMOTE, '/patients/%s/media' % info['ParentPatient']) |
|
e1827a4f5d3b
test_archive_transcode
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
291
diff
changeset
|
5671 self.assertEqual(2, len(z.namelist())) |
|
e1827a4f5d3b
test_archive_transcode
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
291
diff
changeset
|
5672 self.assertEqual('1.2.840.10008.1.2.1', GetTransferSyntax(z.read('IMAGES/IM0'))) |
|
e1827a4f5d3b
test_archive_transcode
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
291
diff
changeset
|
5673 |
|
e1827a4f5d3b
test_archive_transcode
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
291
diff
changeset
|
5674 self.assertRaises(Exception, lambda: DoGet(_REMOTE, '/patients/%s/media?transcode=nope' % info['ParentPatient'])) |
|
e1827a4f5d3b
test_archive_transcode
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
291
diff
changeset
|
5675 |
|
e1827a4f5d3b
test_archive_transcode
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
291
diff
changeset
|
5676 z = GetArchive(_REMOTE, '/patients/%s/media?transcode=1.2.840.10008.1.2.4.50' % info['ParentPatient']) |
|
e1827a4f5d3b
test_archive_transcode
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
291
diff
changeset
|
5677 self.assertEqual('1.2.840.10008.1.2.4.50', GetTransferSyntax(z.read('IMAGES/IM0'))) |
|
e1827a4f5d3b
test_archive_transcode
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
291
diff
changeset
|
5678 |
|
e1827a4f5d3b
test_archive_transcode
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
291
diff
changeset
|
5679 z = GetArchive(_REMOTE, '/studies/%s/media?transcode=1.2.840.10008.1.2.4.51' % info['ParentStudy']) |
|
e1827a4f5d3b
test_archive_transcode
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
291
diff
changeset
|
5680 self.assertEqual('1.2.840.10008.1.2.4.51', GetTransferSyntax(z.read('IMAGES/IM0'))) |
|
e1827a4f5d3b
test_archive_transcode
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
291
diff
changeset
|
5681 |
|
e1827a4f5d3b
test_archive_transcode
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
291
diff
changeset
|
5682 z = GetArchive(_REMOTE, '/series/%s/media?transcode=1.2.840.10008.1.2.4.57' % info['ParentSeries']) |
|
e1827a4f5d3b
test_archive_transcode
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
291
diff
changeset
|
5683 self.assertEqual('1.2.840.10008.1.2.4.57', GetTransferSyntax(z.read('IMAGES/IM0'))) |
|
e1827a4f5d3b
test_archive_transcode
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
291
diff
changeset
|
5684 |
|
293
032722c3e919
extended test_archive_transcode
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
292
diff
changeset
|
5685 |
|
032722c3e919
extended test_archive_transcode
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
292
diff
changeset
|
5686 # POST on "/media" |
|
032722c3e919
extended test_archive_transcode
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
292
diff
changeset
|
5687 self.assertRaises(Exception, lambda: PostArchive( |
|
032722c3e919
extended test_archive_transcode
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
292
diff
changeset
|
5688 _REMOTE, '/patients/%s/media' % info['ParentPatient'], { 'Transcode' : 'nope' })) |
|
032722c3e919
extended test_archive_transcode
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
292
diff
changeset
|
5689 |
|
032722c3e919
extended test_archive_transcode
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
292
diff
changeset
|
5690 z = PostArchive(_REMOTE, '/patients/%s/media' % info['ParentPatient'], { |
|
032722c3e919
extended test_archive_transcode
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
292
diff
changeset
|
5691 'Transcode' : '1.2.840.10008.1.2.4.50', |
|
032722c3e919
extended test_archive_transcode
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
292
diff
changeset
|
5692 }) |
|
032722c3e919
extended test_archive_transcode
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
292
diff
changeset
|
5693 self.assertEqual('1.2.840.10008.1.2.4.50', GetTransferSyntax(z.read('IMAGES/IM0'))) |
|
032722c3e919
extended test_archive_transcode
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
292
diff
changeset
|
5694 |
|
032722c3e919
extended test_archive_transcode
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
292
diff
changeset
|
5695 z = PostArchive(_REMOTE, '/studies/%s/media' % info['ParentStudy'], { |
|
032722c3e919
extended test_archive_transcode
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
292
diff
changeset
|
5696 'Transcode' : '1.2.840.10008.1.2.4.51', |
|
032722c3e919
extended test_archive_transcode
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
292
diff
changeset
|
5697 }) |
|
032722c3e919
extended test_archive_transcode
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
292
diff
changeset
|
5698 self.assertEqual('1.2.840.10008.1.2.4.51', GetTransferSyntax(z.read('IMAGES/IM0'))) |
|
032722c3e919
extended test_archive_transcode
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
292
diff
changeset
|
5699 |
|
032722c3e919
extended test_archive_transcode
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
292
diff
changeset
|
5700 z = PostArchive(_REMOTE, '/series/%s/media' % info['ParentSeries'], { |
|
032722c3e919
extended test_archive_transcode
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
292
diff
changeset
|
5701 'Transcode' : '1.2.840.10008.1.2.4.57', |
|
032722c3e919
extended test_archive_transcode
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
292
diff
changeset
|
5702 }) |
|
032722c3e919
extended test_archive_transcode
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
292
diff
changeset
|
5703 self.assertEqual('1.2.840.10008.1.2.4.57', GetTransferSyntax(z.read('IMAGES/IM0'))) |
|
032722c3e919
extended test_archive_transcode
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
292
diff
changeset
|
5704 |
|
032722c3e919
extended test_archive_transcode
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
292
diff
changeset
|
5705 |
|
032722c3e919
extended test_archive_transcode
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
292
diff
changeset
|
5706 # GET on "/archive" |
|
292
e1827a4f5d3b
test_archive_transcode
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
291
diff
changeset
|
5707 z = GetArchive(_REMOTE, '/patients/%s/archive' % info['ParentPatient']) |
|
e1827a4f5d3b
test_archive_transcode
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
291
diff
changeset
|
5708 self.assertEqual(1, len(z.namelist())) |
|
e1827a4f5d3b
test_archive_transcode
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
291
diff
changeset
|
5709 self.assertEqual('1.2.840.10008.1.2.1', GetTransferSyntax(z.read(z.namelist()[0]))) |
|
e1827a4f5d3b
test_archive_transcode
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
291
diff
changeset
|
5710 |
|
e1827a4f5d3b
test_archive_transcode
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
291
diff
changeset
|
5711 self.assertRaises(Exception, lambda: DoGet(_REMOTE, '/patients/%s/archive?transcode=nope' % info['ParentPatient'])) |
|
e1827a4f5d3b
test_archive_transcode
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
291
diff
changeset
|
5712 |
|
e1827a4f5d3b
test_archive_transcode
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
291
diff
changeset
|
5713 z = GetArchive(_REMOTE, '/patients/%s/archive?transcode=1.2.840.10008.1.2' % info['ParentPatient']) |
|
e1827a4f5d3b
test_archive_transcode
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
291
diff
changeset
|
5714 self.assertEqual('1.2.840.10008.1.2', GetTransferSyntax(z.read(z.namelist()[0]))) |
|
e1827a4f5d3b
test_archive_transcode
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
291
diff
changeset
|
5715 |
|
e1827a4f5d3b
test_archive_transcode
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
291
diff
changeset
|
5716 z = GetArchive(_REMOTE, '/studies/%s/archive?transcode=1.2.840.10008.1.2.2' % info['ParentStudy']) |
|
e1827a4f5d3b
test_archive_transcode
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
291
diff
changeset
|
5717 self.assertEqual('1.2.840.10008.1.2.2', GetTransferSyntax(z.read(z.namelist()[0]))) |
|
e1827a4f5d3b
test_archive_transcode
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
291
diff
changeset
|
5718 |
|
e1827a4f5d3b
test_archive_transcode
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
291
diff
changeset
|
5719 z = GetArchive(_REMOTE, '/series/%s/archive?transcode=1.2.840.10008.1.2.4.70' % info['ParentSeries']) |
|
e1827a4f5d3b
test_archive_transcode
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
291
diff
changeset
|
5720 self.assertEqual('1.2.840.10008.1.2.4.70', GetTransferSyntax(z.read(z.namelist()[0]))) |
|
293
032722c3e919
extended test_archive_transcode
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
292
diff
changeset
|
5721 |
|
032722c3e919
extended test_archive_transcode
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
292
diff
changeset
|
5722 |
|
032722c3e919
extended test_archive_transcode
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
292
diff
changeset
|
5723 # POST on "/archive" |
|
032722c3e919
extended test_archive_transcode
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
292
diff
changeset
|
5724 self.assertRaises(Exception, lambda: PostArchive( |
|
032722c3e919
extended test_archive_transcode
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
292
diff
changeset
|
5725 _REMOTE, '/patients/%s/archive' % info['ParentPatient'], { 'Transcode' : 'nope' })) |
|
032722c3e919
extended test_archive_transcode
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
292
diff
changeset
|
5726 |
|
032722c3e919
extended test_archive_transcode
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
292
diff
changeset
|
5727 z = PostArchive(_REMOTE, '/patients/%s/archive' % info['ParentPatient'], { |
|
032722c3e919
extended test_archive_transcode
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
292
diff
changeset
|
5728 'Transcode' : '1.2.840.10008.1.2.4.50', |
|
032722c3e919
extended test_archive_transcode
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
292
diff
changeset
|
5729 }) |
|
032722c3e919
extended test_archive_transcode
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
292
diff
changeset
|
5730 self.assertEqual('1.2.840.10008.1.2.4.50', GetTransferSyntax(z.read(z.namelist()[0]))) |
|
032722c3e919
extended test_archive_transcode
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
292
diff
changeset
|
5731 |
|
032722c3e919
extended test_archive_transcode
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
292
diff
changeset
|
5732 z = PostArchive(_REMOTE, '/studies/%s/archive' % info['ParentStudy'], { |
|
032722c3e919
extended test_archive_transcode
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
292
diff
changeset
|
5733 'Transcode' : '1.2.840.10008.1.2.4.51', |
|
032722c3e919
extended test_archive_transcode
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
292
diff
changeset
|
5734 }) |
|
032722c3e919
extended test_archive_transcode
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
292
diff
changeset
|
5735 self.assertEqual('1.2.840.10008.1.2.4.51', GetTransferSyntax(z.read(z.namelist()[0]))) |
|
032722c3e919
extended test_archive_transcode
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
292
diff
changeset
|
5736 |
|
032722c3e919
extended test_archive_transcode
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
292
diff
changeset
|
5737 z = PostArchive(_REMOTE, '/series/%s/archive' % info['ParentSeries'], { |
|
032722c3e919
extended test_archive_transcode
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
292
diff
changeset
|
5738 'Transcode' : '1.2.840.10008.1.2.4.57', |
|
032722c3e919
extended test_archive_transcode
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
292
diff
changeset
|
5739 }) |
|
032722c3e919
extended test_archive_transcode
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
292
diff
changeset
|
5740 self.assertEqual('1.2.840.10008.1.2.4.57', GetTransferSyntax(z.read(z.namelist()[0]))) |
|
292
e1827a4f5d3b
test_archive_transcode
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
291
diff
changeset
|
5741 |
|
293
032722c3e919
extended test_archive_transcode
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
292
diff
changeset
|
5742 |
|
032722c3e919
extended test_archive_transcode
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
292
diff
changeset
|
5743 # "/tools/create-*" |
|
032722c3e919
extended test_archive_transcode
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
292
diff
changeset
|
5744 z = PostArchive(_REMOTE, '/tools/create-archive', { |
|
032722c3e919
extended test_archive_transcode
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
292
diff
changeset
|
5745 'Resources' : [ info['ParentStudy'] ], |
|
032722c3e919
extended test_archive_transcode
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
292
diff
changeset
|
5746 'Transcode' : '1.2.840.10008.1.2.4.50', |
|
032722c3e919
extended test_archive_transcode
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
292
diff
changeset
|
5747 }) |
|
032722c3e919
extended test_archive_transcode
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
292
diff
changeset
|
5748 self.assertEqual(1, len(z.namelist())) |
|
032722c3e919
extended test_archive_transcode
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
292
diff
changeset
|
5749 self.assertEqual('1.2.840.10008.1.2.4.50', GetTransferSyntax(z.read(z.namelist()[0]))) |
|
032722c3e919
extended test_archive_transcode
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
292
diff
changeset
|
5750 |
|
032722c3e919
extended test_archive_transcode
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
292
diff
changeset
|
5751 z = PostArchive(_REMOTE, '/tools/create-media', { |
|
032722c3e919
extended test_archive_transcode
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
292
diff
changeset
|
5752 'Resources' : [ info['ParentStudy'] ], |
|
032722c3e919
extended test_archive_transcode
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
292
diff
changeset
|
5753 'Transcode' : '1.2.840.10008.1.2.4.51', |
|
032722c3e919
extended test_archive_transcode
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
292
diff
changeset
|
5754 }) |
|
032722c3e919
extended test_archive_transcode
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
292
diff
changeset
|
5755 self.assertEqual(2, len(z.namelist())) |
|
032722c3e919
extended test_archive_transcode
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
292
diff
changeset
|
5756 self.assertEqual('1.2.840.10008.1.2.4.51', GetTransferSyntax(z.read('IMAGES/IM0'))) |
|
032722c3e919
extended test_archive_transcode
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
292
diff
changeset
|
5757 |
|
032722c3e919
extended test_archive_transcode
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
292
diff
changeset
|
5758 z = PostArchive(_REMOTE, '/tools/create-media-extended', { |
|
032722c3e919
extended test_archive_transcode
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
292
diff
changeset
|
5759 'Resources' : [ info['ParentStudy'] ], |
|
032722c3e919
extended test_archive_transcode
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
292
diff
changeset
|
5760 'Transcode' : '1.2.840.10008.1.2.4.57', |
|
032722c3e919
extended test_archive_transcode
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
292
diff
changeset
|
5761 }) |
|
032722c3e919
extended test_archive_transcode
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
292
diff
changeset
|
5762 self.assertEqual(2, len(z.namelist())) |
|
032722c3e919
extended test_archive_transcode
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
292
diff
changeset
|
5763 self.assertEqual('1.2.840.10008.1.2.4.57', GetTransferSyntax(z.read('IMAGES/IM0'))) |
|
032722c3e919
extended test_archive_transcode
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
292
diff
changeset
|
5764 |
| 308 | 5765 |
|
301
6652d5720a45
test_modify_keep_source
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
300
diff
changeset
|
5766 def test_modify_keep_source(self): |
|
6652d5720a45
test_modify_keep_source
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
300
diff
changeset
|
5767 # https://groups.google.com/d/msg/orthanc-users/CgU-Wg8vDio/BY5ZWcDEAgAJ |
|
6652d5720a45
test_modify_keep_source
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
300
diff
changeset
|
5768 i = UploadInstance(_REMOTE, 'DummyCT.dcm') |
|
6652d5720a45
test_modify_keep_source
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
300
diff
changeset
|
5769 self.assertEqual(1, len(DoGet(_REMOTE, '/studies'))) |
|
6652d5720a45
test_modify_keep_source
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
300
diff
changeset
|
5770 |
|
6652d5720a45
test_modify_keep_source
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
300
diff
changeset
|
5771 j = DoPost(_REMOTE, '/studies/%s/modify' % i['ParentStudy'], { |
|
6652d5720a45
test_modify_keep_source
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
300
diff
changeset
|
5772 'Replace' : { |
|
6652d5720a45
test_modify_keep_source
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
300
diff
changeset
|
5773 'StationName' : 'TEST', |
|
6652d5720a45
test_modify_keep_source
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
300
diff
changeset
|
5774 }, |
|
6652d5720a45
test_modify_keep_source
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
300
diff
changeset
|
5775 'KeepSource' : True, |
|
6652d5720a45
test_modify_keep_source
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
300
diff
changeset
|
5776 }) |
|
6652d5720a45
test_modify_keep_source
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
300
diff
changeset
|
5777 |
|
6652d5720a45
test_modify_keep_source
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
300
diff
changeset
|
5778 s = DoGet(_REMOTE, '/studies') |
|
6652d5720a45
test_modify_keep_source
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
300
diff
changeset
|
5779 self.assertEqual(2, len(s)) |
|
6652d5720a45
test_modify_keep_source
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
300
diff
changeset
|
5780 self.assertTrue(i['ParentStudy'] in s) |
|
6652d5720a45
test_modify_keep_source
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
300
diff
changeset
|
5781 self.assertTrue(j['ID'] in s) |
|
6652d5720a45
test_modify_keep_source
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
300
diff
changeset
|
5782 |
|
6652d5720a45
test_modify_keep_source
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
300
diff
changeset
|
5783 DoDelete(_REMOTE, '/studies/%s' % j['ID']) |
|
6652d5720a45
test_modify_keep_source
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
300
diff
changeset
|
5784 self.assertEqual(1, len(DoGet(_REMOTE, '/studies'))) |
|
6652d5720a45
test_modify_keep_source
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
300
diff
changeset
|
5785 |
|
6652d5720a45
test_modify_keep_source
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
300
diff
changeset
|
5786 j = DoPost(_REMOTE, '/studies/%s/modify' % i['ParentStudy'], { |
|
6652d5720a45
test_modify_keep_source
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
300
diff
changeset
|
5787 'Replace' : { |
|
6652d5720a45
test_modify_keep_source
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
300
diff
changeset
|
5788 'StationName' : 'TEST', |
|
6652d5720a45
test_modify_keep_source
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
300
diff
changeset
|
5789 }, |
|
6652d5720a45
test_modify_keep_source
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
300
diff
changeset
|
5790 'KeepSource' : False, |
|
6652d5720a45
test_modify_keep_source
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
300
diff
changeset
|
5791 }) |
|
6652d5720a45
test_modify_keep_source
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
300
diff
changeset
|
5792 |
|
6652d5720a45
test_modify_keep_source
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
300
diff
changeset
|
5793 s = DoGet(_REMOTE, '/studies') |
|
6652d5720a45
test_modify_keep_source
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
300
diff
changeset
|
5794 self.assertEqual(1, len(s)) |
|
6652d5720a45
test_modify_keep_source
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
300
diff
changeset
|
5795 self.assertFalse(i['ParentStudy'] in s) |
|
6652d5720a45
test_modify_keep_source
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
300
diff
changeset
|
5796 self.assertTrue(j['ID'] in s) |
|
302
22b6dd0f8c84
test_modify_transcode_study
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
301
diff
changeset
|
5797 |
|
22b6dd0f8c84
test_modify_transcode_study
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
301
diff
changeset
|
5798 |
|
22b6dd0f8c84
test_modify_transcode_study
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
301
diff
changeset
|
5799 def test_modify_transcode_study(self): |
|
22b6dd0f8c84
test_modify_transcode_study
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
301
diff
changeset
|
5800 i = UploadInstance(_REMOTE, 'KarstenHilbertRF.dcm') |
|
22b6dd0f8c84
test_modify_transcode_study
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
301
diff
changeset
|
5801 self.assertEqual('1.2.840.10008.1.2.1', GetTransferSyntax( |
|
22b6dd0f8c84
test_modify_transcode_study
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
301
diff
changeset
|
5802 DoGet(_REMOTE, '/instances/%s/file' % i['ID']))) |
|
22b6dd0f8c84
test_modify_transcode_study
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
301
diff
changeset
|
5803 |
|
22b6dd0f8c84
test_modify_transcode_study
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
301
diff
changeset
|
5804 self.assertEqual(1, len(DoGet(_REMOTE, '/instances'))) |
|
22b6dd0f8c84
test_modify_transcode_study
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
301
diff
changeset
|
5805 j = DoPost(_REMOTE, '/studies/%s/modify' % i['ParentStudy'], { |
|
22b6dd0f8c84
test_modify_transcode_study
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
301
diff
changeset
|
5806 'Transcode' : '1.2.840.10008.1.2.4.50', |
|
22b6dd0f8c84
test_modify_transcode_study
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
301
diff
changeset
|
5807 'KeepSource' : False |
|
22b6dd0f8c84
test_modify_transcode_study
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
301
diff
changeset
|
5808 }) |
|
22b6dd0f8c84
test_modify_transcode_study
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
301
diff
changeset
|
5809 |
|
22b6dd0f8c84
test_modify_transcode_study
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
301
diff
changeset
|
5810 k = DoGet(_REMOTE, '/instances') |
|
22b6dd0f8c84
test_modify_transcode_study
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
301
diff
changeset
|
5811 self.assertEqual(1, len(k)) |
|
22b6dd0f8c84
test_modify_transcode_study
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
301
diff
changeset
|
5812 self.assertEqual(i['ID'], DoGet(_REMOTE, '/instances/%s/metadata?expand' % k[0]) ['ModifiedFrom']) |
|
22b6dd0f8c84
test_modify_transcode_study
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
301
diff
changeset
|
5813 self.assertEqual('1.2.840.10008.1.2.4.50', GetTransferSyntax( |
|
22b6dd0f8c84
test_modify_transcode_study
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
301
diff
changeset
|
5814 DoGet(_REMOTE, '/instances/%s/file' % k[0]))) |
|
22b6dd0f8c84
test_modify_transcode_study
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
301
diff
changeset
|
5815 |
|
305
ed20ead1a8b6
test_store_peer_transcoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
304
diff
changeset
|
5816 |
|
ed20ead1a8b6
test_store_peer_transcoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
304
diff
changeset
|
5817 def test_store_peer_transcoding(self): |
|
ed20ead1a8b6
test_store_peer_transcoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
304
diff
changeset
|
5818 i = UploadInstance(_REMOTE, 'KarstenHilbertRF.dcm')['ID'] |
|
ed20ead1a8b6
test_store_peer_transcoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
304
diff
changeset
|
5819 |
|
ed20ead1a8b6
test_store_peer_transcoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
304
diff
changeset
|
5820 SYNTAXES = [ |
|
ed20ead1a8b6
test_store_peer_transcoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
304
diff
changeset
|
5821 '1.2.840.10008.1.2', |
|
ed20ead1a8b6
test_store_peer_transcoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
304
diff
changeset
|
5822 '1.2.840.10008.1.2.1', |
|
ed20ead1a8b6
test_store_peer_transcoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
304
diff
changeset
|
5823 #'1.2.840.10008.1.2.1.99', # Deflated Explicit VR Little Endian (cannot be decoded in debug mode if Orthanc is statically linked against DCMTK 3.6.5) |
|
ed20ead1a8b6
test_store_peer_transcoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
304
diff
changeset
|
5824 '1.2.840.10008.1.2.2', |
|
ed20ead1a8b6
test_store_peer_transcoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
304
diff
changeset
|
5825 '1.2.840.10008.1.2.4.50', |
|
ed20ead1a8b6
test_store_peer_transcoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
304
diff
changeset
|
5826 '1.2.840.10008.1.2.4.51', |
|
ed20ead1a8b6
test_store_peer_transcoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
304
diff
changeset
|
5827 '1.2.840.10008.1.2.4.57', |
|
ed20ead1a8b6
test_store_peer_transcoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
304
diff
changeset
|
5828 '1.2.840.10008.1.2.4.70', |
|
ed20ead1a8b6
test_store_peer_transcoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
304
diff
changeset
|
5829 ] |
|
ed20ead1a8b6
test_store_peer_transcoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
304
diff
changeset
|
5830 |
|
ed20ead1a8b6
test_store_peer_transcoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
304
diff
changeset
|
5831 if HasGdcmPlugin(_REMOTE): |
|
ed20ead1a8b6
test_store_peer_transcoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
304
diff
changeset
|
5832 SYNTAXES = SYNTAXES + [ |
|
ed20ead1a8b6
test_store_peer_transcoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
304
diff
changeset
|
5833 '1.2.840.10008.1.2.4.80', # This makes DCMTK 3.6.2 crash |
|
ed20ead1a8b6
test_store_peer_transcoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
304
diff
changeset
|
5834 '1.2.840.10008.1.2.4.81', # This makes DCMTK 3.6.2 crash |
|
ed20ead1a8b6
test_store_peer_transcoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
304
diff
changeset
|
5835 '1.2.840.10008.1.2.4.90', # JPEG2k, unavailable without GDCM |
|
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5836 '1.2.840.10008.1.2.4.91', # JPEG2k, unavailable without GDCM |
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5837 ] |
|
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5838 |
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|
5839 for syntax in SYNTAXES: |
|
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|
5840 body = { |
|
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5841 'Resources' : [ i ], |
|
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5842 } |
|
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5843 |
|
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5844 if syntax != '1.2.840.10008.1.2.1': |
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5845 body['Transcode'] = syntax |
|
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|
5846 |
|
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5847 self.assertEqual(0, len(DoGet(_LOCAL, '/instances'))) |
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5848 self.assertEqual(1, len(DoGet(_REMOTE, '/instances'))) |
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5849 DoPost(_REMOTE, '/peers/peer/store', body, 'text/plain') |
|
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5850 self.assertEqual(1, len(DoGet(_LOCAL, '/instances'))) |
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|
5851 self.assertEqual(1, len(DoGet(_REMOTE, '/instances'))) |
|
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|
5852 self.assertEqual(syntax, GetTransferSyntax( |
|
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|
5853 DoGet(_LOCAL, '/instances/%s/file' % DoGet(_LOCAL, '/instances') [0]))) |
|
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|
5854 |
|
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|
5855 DropOrthanc(_LOCAL) |
| 308 | 5856 |
| 5857 | |
| 295 | 5858 def test_getscu(self): |
| 307 | 5859 def CleanTarget(): |
| 5860 if os.path.isdir('/tmp/GETSCU'): | |
| 5861 shutil.rmtree('/tmp/GETSCU') | |
| 5862 os.makedirs('/tmp/GETSCU') | |
| 5863 | |
|
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|
5864 env = {} |
|
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|
5865 if _DOCKER: |
|
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|
5866 # This is "getscu" from DCMTK 3.6.5 compiled using LSB, |
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|
5867 # and running in a GNU/Linux distribution running DCMTK |
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|
5868 # 3.6.0. Tell "getscu" where it can find the DICOM dictionary. |
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|
5869 env['DCMDICTPATH'] = '/usr/share/libdcmtk2/dicom.dic' |
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|
5870 |
| 295 | 5871 # no transcoding required |
| 307 | 5872 UploadInstance(_REMOTE, 'Brainix/Flair/IM-0001-0001.dcm')['ID'] |
| 5873 | |
| 5874 CleanTarget() | |
| 295 | 5875 |
|
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|
5876 subprocess.check_call([ |
|
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|
5877 FindExecutable('getscu'), |
|
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|
5878 _REMOTE['Server'], |
|
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|
5879 str(_REMOTE['DicomPort']), |
|
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|
5880 '-aec', 'ORTHANC', |
|
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changeset
|
5881 '-aet', 'ORTHANCTEST', # pretend to be the other orthanc |
| 307 | 5882 '-k', '0020,000d=2.16.840.1.113669.632.20.1211.10000357775', |
|
306
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|
5883 '-k', '0008,0052=STUDY', |
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|
5884 '--output-directory', '/tmp/GETSCU/' |
|
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|
5885 ], env = env) |
| 295 | 5886 |
| 311 | 5887 f1 = '/tmp/GETSCU/MR.1.3.46.670589.11.0.0.11.4.2.0.8743.5.5396.2006120114314079549' |
| 5888 self.assertTrue(os.path.isfile(f1)) | |
| 5889 with open(f1, 'rb') as f: | |
| 5890 self.assertEqual('1.2.840.10008.1.2.1', GetTransferSyntax(f.read())) | |
| 5891 | |
| 307 | 5892 CleanTarget() |
| 295 | 5893 |
| 5894 # transcoding required | |
| 311 | 5895 UploadInstance(_REMOTE, 'TransferSyntaxes/1.2.840.10008.1.2.4.50.dcm') |
| 307 | 5896 |
| 5897 subprocess.check_call([ | |
| 5898 FindExecutable('getscu'), | |
| 5899 _REMOTE['Server'], | |
| 5900 str(_REMOTE['DicomPort']), | |
| 5901 '-aec', 'ORTHANC', | |
| 5902 '-aet', 'ORTHANCTEST', # pretend to be the other orthanc | |
| 311 | 5903 '-k', '0020,000d=2.16.840.1.113669.632.20.1211.10000357775\\1.2.840.113663.1298.6234813.1.298.20000329.1115122', |
| 307 | 5904 '-k', '0008,0052=STUDY', |
| 5905 '--output-directory', '/tmp/GETSCU/' | |
| 5906 ], env = env) | |
| 5907 | |
| 311 | 5908 self.assertTrue(os.path.isfile(f1)) |
| 5909 with open(f1, 'rb') as f: | |
| 5910 self.assertEqual('1.2.840.10008.1.2.1', GetTransferSyntax(f.read())) | |
| 5911 | |
| 5912 # This file is transcoded from "1.2.840.10008.1.2.4.50" to "1.2.840.10008.1.2.1" | |
| 5913 # (LittleEndianExplicit is proposed by default by "getscu") | |
| 5914 f2 = '/tmp/GETSCU/US.1.2.840.113663.1298.1.3.715.20000329.1115326' | |
| 5915 self.assertTrue(os.path.isfile(f2)) | |
| 5916 with open(f2, 'rb') as f: | |
| 5917 self.assertEqual('1.2.840.10008.1.2.1', GetTransferSyntax(f.read())) | |
|
324
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diff
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|
5918 |
|
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diff
changeset
|
5919 |
|
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diff
changeset
|
5920 def test_findscu_truncation(self): |
|
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diff
changeset
|
5921 # https://groups.google.com/forum/#!msg/orthanc-users/FkckWAHvso8/UbRBAhQ5CwAJ |
|
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changeset
|
5922 # Fixed by: https://hg.orthanc-server.com/orthanc/rev/2724977419fb |
|
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|
5923 UploadInstance(_REMOTE, 'Multiframe.dcm') |
|
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diff
changeset
|
5924 UploadInstance(_REMOTE, 'ColorTestImageJ.dcm') |
|
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diff
changeset
|
5925 |
|
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diff
changeset
|
5926 study = '1.3.46.670589.7.5.8.80001255161.20000323.151537.1' |
|
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diff
changeset
|
5927 |
|
6164d39399ad
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diff
changeset
|
5928 i = CallFindScu([ '-k', '0008,0052=STUDY', '-k', 'StudyInstanceUID' ]) |
|
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diff
changeset
|
5929 result = re.findall('\(0020,000d\).*?\[(.*?)\]', i) |
|
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diff
changeset
|
5930 self.assertEqual(2, len(result)) |
|
6164d39399ad
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diff
changeset
|
5931 |
|
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diff
changeset
|
5932 # The "StudyInstanceUID" is set as a list of 5 times the same |
|
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diff
changeset
|
5933 # study, leading to a string of 249 characters |
|
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diff
changeset
|
5934 i = CallFindScu([ '-k', '0008,0052=STUDY', '-k', |
|
6164d39399ad
test_findscu_truncation
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diff
changeset
|
5935 'StudyInstanceUID=%s\\%s\\%s\\%s\\%s' % (( study, ) * 5) ]) |
|
6164d39399ad
test_findscu_truncation
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diff
changeset
|
5936 result = re.findall('\(0020,000d\).*?\[(.*?)\]', i) |
|
6164d39399ad
test_findscu_truncation
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diff
changeset
|
5937 self.assertEqual(1, len(result)) |
|
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diff
changeset
|
5938 |
|
6164d39399ad
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diff
changeset
|
5939 # The "StudyInstanceUID" is set as a list of 6 times the same |
|
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diff
changeset
|
5940 # study, leading to a string of 299 characters. In Orthanc <= |
|
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diff
changeset
|
5941 # 1.7.2, this is above the value of ORTHANC_MAXIMUM_TAG_LENGTH |
|
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diff
changeset
|
5942 # == 256, and is thus wiped out by C-FIND SCP. As a |
|
6164d39399ad
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diff
changeset
|
5943 # consequence, Orthanc <= 1.7.2 doesn't apply the filter on |
|
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diff
changeset
|
5944 # "StudyInstanceUID" and returns all the available |
|
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diff
changeset
|
5945 # studies (i.e. 2). This issue was fixed in Orthanc 1.7.3. |
|
6164d39399ad
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diff
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|
5946 i = CallFindScu([ '-k', '0008,0052=STUDY', '-k', |
|
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diff
changeset
|
5947 'StudyInstanceUID=%s\\%s\\%s\\%s\\%s\\%s' % (( study, ) * 6) ]) |
|
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changeset
|
5948 result = re.findall('\(0020,000d\).*?\[(.*?)\]', i) |
|
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changeset
|
5949 self.assertEqual(1, len(result)) |
|
328
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diff
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|
5950 |
|
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diff
changeset
|
5951 |
|
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diff
changeset
|
5952 def test_store_compressed(self): |
|
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changeset
|
5953 with open(GetDatabasePath('DummyCT.dcm'), 'rb') as f: |
|
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|
5954 dicom = f.read() |
|
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diff
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|
5955 i = DoPost(_REMOTE, '/instances', dicom) ['ID'] |
|
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|
5956 sourceSize = len(dicom) |
|
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|
5957 |
|
328
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|
5958 self.assertEqual(0, len(DoGet(_LOCAL, '/instances'))) |
|
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changeset
|
5959 self.assertEqual(1, len(DoGet(_REMOTE, '/instances'))) |
|
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changeset
|
5960 |
|
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changeset
|
5961 # Sending to the local Orthanc 0.8.6 server, without compression: OK |
|
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changeset
|
5962 jobId = MonitorJob2(_REMOTE, lambda: DoPost( |
|
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|
5963 _REMOTE, '/peers/peer/store', { |
|
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|
5964 'Resources' : [ i ], |
|
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|
5965 'Synchronous' : False, |
|
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|
5966 })) |
|
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diff
changeset
|
5967 |
|
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changeset
|
5968 job = DoGet(_REMOTE, '/jobs/%s' % jobId) |
|
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changeset
|
5969 self.assertFalse(job['Content']['Compress']) |
|
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changeset
|
5970 self.assertEqual('', job['Content']['Peer'][2]) # Password must not be reported |
|
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changeset
|
5971 self.assertEqual(str(sourceSize), job['Content']['Size']) |
|
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diff
changeset
|
5972 |
|
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5973 self.assertEqual(1, len(DoGet(_LOCAL, '/instances'))) |
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5974 DropOrthanc(_LOCAL) |
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5975 |
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5976 # Sending to the local Orthanc 0.8.6 server, with compression: |
|
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5977 # Not supported by Orthanc 0.8.6 => failure |
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5978 self.assertRaises(Exception, lambda: DoPost(_REMOTE, '/peers/peer/store', { |
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5979 'Resources' : [ i ], |
|
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5980 'Compress' : True, |
|
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5981 })) |
|
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5982 self.assertEqual(0, len(DoGet(_LOCAL, '/instances'))) |
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5983 |
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5984 # Sending to the tested remote server, with compression: OK |
|
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5985 jobId = MonitorJob2(_REMOTE, lambda: DoPost( |
|
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5986 _REMOTE, '/peers/self/store', { |
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5987 'Resources' : [ i ], |
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5988 'Compress' : True, |
|
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5989 'Synchronous' : False, |
|
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5990 })) |
|
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5991 |
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5992 job = DoGet(_REMOTE, '/jobs/%s' % jobId) |
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5993 self.assertTrue(job['Content']['Compress']) |
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5994 |
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5995 # Compression must have divided the size of the sent data at least twice |
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5996 self.assertLess(int(job['Content']['Size']), sourceSize / 2) |
| 332 | 5997 |
| 5998 | |
| 5999 def test_move_ambra(self): | |
| 6000 # "Orthanc + Ambra: Query/Retrieve" (2020-08-25) | |
| 6001 # https://groups.google.com/g/orthanc-users/c/yIUnZ9v9-Zs/m/GQPXiAOiCQAJ | |
| 6002 | |
| 6003 UploadInstance(_REMOTE, '2019-06-17-VedranZdesic.dcm') | |
| 6004 | |
| 6005 self.assertFalse(MonitorJob(_REMOTE, lambda: CallMoveScu([ | |
| 6006 '--study', | |
| 6007 '-k', 'StudyInstanceUID=' | |
| 6008 ]))) | |
| 6009 | |
| 6010 self.assertFalse(MonitorJob(_REMOTE, lambda: CallMoveScu([ | |
| 6011 '--study', | |
| 6012 '-k', 'AccessionNumber=', | |
| 6013 ]))) | |
| 6014 | |
| 6015 self.assertFalse(MonitorJob(_REMOTE, lambda: CallMoveScu([ | |
| 6016 '--study', | |
| 6017 '-k', 'AccessionNumber=', | |
| 6018 '-k', 'StudyInstanceUID=' | |
| 6019 ]))) | |
| 6020 | |
| 6021 self.assertEqual(0, len(DoGet(_LOCAL, '/instances'))) | |
| 6022 self.assertTrue(MonitorJob(_REMOTE, lambda: CallMoveScu([ | |
| 6023 '--study', | |
| 6024 '-k', 'AccessionNumber=CT16000988', | |
| 6025 '-k', 'StudyInstanceUID=', | |
| 6026 ]))) | |
| 6027 self.assertEqual(1, len(DoGet(_LOCAL, '/instances'))) | |
| 6028 DropOrthanc(_LOCAL) | |
| 6029 | |
| 6030 self.assertEqual(0, len(DoGet(_LOCAL, '/instances'))) | |
| 6031 self.assertTrue(MonitorJob(_REMOTE, lambda: CallMoveScu([ | |
| 6032 '--study', | |
| 6033 '-k', 'AccessionNumber=CT16000988', | |
| 6034 '-k', 'StudyInstanceUID=1.2.840.113619.2.278.3.4194965761.659.1468842739.39', | |
| 6035 ]))) | |
| 6036 self.assertEqual(1, len(DoGet(_LOCAL, '/instances'))) | |
| 6037 DropOrthanc(_LOCAL) | |
| 6038 | |
| 6039 # This fails on Orthanc <= 1.7.3 | |
| 6040 self.assertEqual(0, len(DoGet(_LOCAL, '/instances'))) | |
| 6041 self.assertTrue(MonitorJob(_REMOTE, lambda: CallMoveScu([ | |
| 6042 '--study', | |
| 6043 '-k', 'AccessionNumber=', | |
| 6044 '-k', 'StudyInstanceUID=1.2.840.113619.2.278.3.4194965761.659.1468842739.39' | |
| 6045 ]))) | |
| 6046 self.assertEqual(1, len(DoGet(_LOCAL, '/instances'))) | |
| 6047 DropOrthanc(_LOCAL) | |
|
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6048 |
|
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|
6049 |
|
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6050 def test_decode_elscint(self): |
|
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6051 # https://groups.google.com/g/orthanc-users/c/d9anAx6lSis/m/qEzm1x3PAAAJ |
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6052 a = UploadInstance(_REMOTE, '2020-09-12-ELSCINT1-PMSCT_RLE1.dcm')['ID'] |
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6053 b = UploadInstance(_REMOTE, '2020-09-11-Christopher-ELSCINT1-Raw.dcm')['ID'] |
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6054 |
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6055 im = GetImage(_REMOTE, '/instances/%s/frames/0/preview' % a) |
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6056 self.assertEqual("L", im.mode) |
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6057 self.assertEqual(512, im.size[0]) |
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6058 self.assertEqual(512, im.size[1]) |
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6059 |
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|
6060 im = GetImage(_REMOTE, '/instances/%s/frames/0/preview' % b) |
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6061 self.assertEqual("L", im.mode) |
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|
6062 self.assertEqual(512, im.size[0]) |
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|
6063 self.assertEqual(512, im.size[1]) |
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6064 |
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changeset
|
6065 # The two tests below fail on Orthanc <= 1.7.3 |
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|
6066 raw = DoGet(_REMOTE, '/instances/%s/frames/0/raw' % a) |
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|
6067 self.assertEqual(512 * 512 * 2, len(raw)) |
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|
6068 |
|
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changeset
|
6069 raw = DoGet(_REMOTE, '/instances/%s/frames/0/raw' % b) |
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|
6070 self.assertEqual(512 * 512 * 2, len(raw)) |
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|
6071 |
|
334
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6072 |
|
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6073 def test_rest_modalities_in_study_2(self): |
|
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|
6074 # Problem reported by Alain Mazy on 2020-09-15 |
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|
6075 UploadInstance(_REMOTE, 'Comunix/Ct/IM-0001-0001.dcm') |
|
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6076 UploadInstance(_REMOTE, 'Comunix/Pet/IM-0001-0001.dcm') |
|
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|
6077 |
|
335
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|
6078 i = CallFindScu([ '-k', '0008,0052=STUDY', '-k', '0020,000d=', '-k', '0008,0061=' ]) |
|
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|
6079 modalitiesInStudy = re.findall('\(0008,0061\).*?\[(.*?)\]', i) |
|
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|
6080 self.assertEqual(1, len(modalitiesInStudy)) |
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|
6081 self.assertEqual('CT\\PT ', modalitiesInStudy[0]) |
|
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|
6082 |
|
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changeset
|
6083 for i in [ '', 'CT', 'PT', 'UX', 'UX\\MR', 'CT\\PT', 'UX\\PT', 'CT\\PT', 'UX\\CT\\PT' ]: |
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|
6084 # The empty string '' corresponds to universal matching. |
|
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|
6085 # The case where "i == 'CT'" failed in Orthanc <= 1.7.3. |
|
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|
6086 |
|
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changeset
|
6087 if i in [ 'UX', 'UX\\MR' ]: |
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|
6088 expected = 0 |
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|
6089 else: |
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changeset
|
6090 expected = 1 |
|
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|
6091 |
|
334
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changeset
|
6092 a = DoPost(_REMOTE, '/tools/find', { 'Level' : 'Study', |
|
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|
6093 'Query' : { 'ModalitiesInStudy' : i }}) |
|
335
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changeset
|
6094 self.assertEqual(expected, len(a)) |
|
334
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|
6095 |
|
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diff
changeset
|
6096 i = CallFindScu([ '-k', '0008,0052=STUDY', '-k', '0020,000d=', '-k', '0008,0061=%s' % i ]) |
|
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changeset
|
6097 studyInstanceUid = re.findall('\(0020,000d\).*?\[(.*?)\]', i) |
|
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|
6098 self.assertEqual(expected, len(studyInstanceUid)) |
|
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|
6099 |
|
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|
6100 |
|
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|
6101 def test_webdav(self): |
|
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|
6102 self.assertRaises(Exception, lambda: DoPropFind(_REMOTE, '/webdav/', 2)) |
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|
6103 |
|
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|
6104 for suffix in [ '', '/' ]: |
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6105 f = DoPropFind(_REMOTE, '/webdav' + suffix, 0) |
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|
6106 self.assertEqual(1, len(f)) |
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|
6107 self.assertTrue('/webdav/' in f.keys()) |
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|
6108 self.assertTrue(f['/webdav/']['folder']) |
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|
6109 self.assertEqual('webdav', f['/webdav/']['displayname']) |
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6110 |
|
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|
6111 f = DoPropFind(_REMOTE, '/webdav' + suffix, 1) |
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|
6112 self.assertEqual(6, len(f)) |
|
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|
6113 self.assertTrue(f['/webdav/']['folder']) |
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|
6114 self.assertEqual('webdav', f['/webdav/']['displayname']) |
|
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6115 |
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|
6116 for i in [ 'by-dates', 'by-patients', 'by-studies', 'by-uids', 'uploads' ]: |
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|
6117 self.assertTrue(f['/webdav/%s' % i]['folder']) |
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|
6118 self.assertEqual(i, f['/webdav/%s' % i]['displayname']) |
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|
6119 |
|
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|
6120 for depth in [ 0, 1 ]: |
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|
6121 for suffix2 in [ '', '/' ]: |
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|
6122 g = DoPropFind(_REMOTE, '/webdav/%s%s' % (i, suffix2), depth) |
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|
6123 |
|
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|
6124 if i == 'uploads': |
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|
6125 # Empty folders might still exist in "/uploads/" |
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|
6126 self.assertTrue('/webdav/uploads/' in g) |
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|
6127 self.assertEqual('uploads', g['/webdav/uploads/']['displayname']) |
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|
6128 for j in g.items(): |
|
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|
6129 self.assertTrue(g.items()[0][1]['folder']) |
|
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|
6130 else: |
|
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changeset
|
6131 self.assertEqual(1, len(g)) |
|
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|
6132 self.assertEqual('/webdav/%s/' % i, g.items()[0][0]) |
|
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|
6133 self.assertTrue(g.items()[0][1]['folder']) |
|
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diff
changeset
|
6134 self.assertEqual(i, g.items()[0][1]['displayname']) |
|
341
66a36befb208
extending Toolbox.DoPropFind()
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diff
changeset
|
6135 |
|
342
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changeset
|
6136 self.assertEqual(0, len(DoGet(_REMOTE, '/patients'))) |
|
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|
6137 with open(GetDatabasePath('DummyCT.dcm'), 'rb') as f: |
|
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|
6138 DoPut(_REMOTE, '/webdav/uploads/dummy', f.read(), 'text/plain') |
|
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changeset
|
6139 |
|
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diff
changeset
|
6140 while len(DoGet(_REMOTE, '/patients')) == 0: |
|
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changeset
|
6141 time.sleep(0.01) |
|
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changeset
|
6142 self.assertEqual(1, len(DoGet(_REMOTE, '/patients'))) |
|
337
ec13ace43bde
trying webdav tests
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diff
changeset
|
6143 |
|
349
698898a93a10
test_log_categories
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diff
changeset
|
6144 |
|
698898a93a10
test_log_categories
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diff
changeset
|
6145 def test_log_categories(self): |
| 350 | 6146 original = DoGet(_REMOTE, '/tools/log-level-http') |
|
349
698898a93a10
test_log_categories
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diff
changeset
|
6147 |
| 350 | 6148 DoPut(_REMOTE, '/tools/log-level-http', 'default') |
| 6149 self.assertEqual('default', DoGet(_REMOTE, '/tools/log-level-http')) | |
|
349
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test_log_categories
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diff
changeset
|
6150 DoGet(_REMOTE, '/system') |
|
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diff
changeset
|
6151 |
| 350 | 6152 DoPut(_REMOTE, '/tools/log-level-http', 'verbose') |
| 6153 self.assertEqual('verbose', DoGet(_REMOTE, '/tools/log-level-http')) | |
|
349
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test_log_categories
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diff
changeset
|
6154 DoGet(_REMOTE, '/system') |
|
698898a93a10
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diff
changeset
|
6155 |
| 350 | 6156 DoPut(_REMOTE, '/tools/log-level-http', 'trace') |
| 6157 self.assertEqual('trace', DoGet(_REMOTE, '/tools/log-level-http')) | |
|
349
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diff
changeset
|
6158 DoGet(_REMOTE, '/system') |
|
698898a93a10
test_log_categories
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diff
changeset
|
6159 |
| 350 | 6160 self.assertRaises(Exception, lambda: DoPut(_REMOTE, '/tools/log-level-http', 'nope')) |
|
349
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test_log_categories
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diff
changeset
|
6161 |
|
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diff
changeset
|
6162 # Switch back to the original log level |
| 350 | 6163 DoPut(_REMOTE, '/tools/log-level-http', original) |
| 6164 | |
| 6165 for c in [ 'generic', 'http', 'dicom', 'plugins', 'sqlite', 'lua', 'jobs' ]: | |
|
349
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diff
changeset
|
6166 DoPut(_REMOTE, '/tools/log-level-%s' % c, DoGet(_REMOTE, '/tools/log-level-%s' % c)) |
|
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diff
changeset
|
6167 |
|
698898a93a10
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diff
changeset
|
6168 self.assertRaises(Exception, lambda: DoPut(_REMOTE, '/tools/log-level-nope', 'default')) |
| 357 | 6169 |
| 6170 | |
| 6171 def test_upload_zip(self): | |
| 6172 f = StringIO() | |
| 6173 with zipfile.ZipFile(f, 'w') as z: | |
| 6174 z.writestr('hello/world/invalid.txt', 'Hello world') | |
| 6175 with open(GetDatabasePath('DummyCT.dcm'), 'rb') as g: | |
| 6176 c = g.read() | |
| 6177 z.writestr('hello/world/dicom1.dcm', c) | |
| 6178 z.writestr('hello/world/dicom2.dcm', c) | |
| 6179 | |
| 6180 f.seek(0) | |
| 6181 i = DoPost(_REMOTE, '/instances', f.read()) | |
| 6182 | |
| 6183 self.assertEqual(2, len(i)) | |
| 6184 self.assertEqual(i[0], i[1]) | |
| 6185 self.assertEqual(6, len(i[0])) | |
| 6186 self.assertEqual('66a662ce-7430e543-bad44d47-0dc5a943-ec7a538d', i[0]['ID']) | |
| 6187 self.assertEqual('f2635388-f01d497a-15f7c06b-ad7dba06-c4c599fe', i[0]['ParentSeries']) | |
| 6188 self.assertEqual('b9c08539-26f93bde-c81ab0d7-bffaf2cb-a4d0bdd0', i[0]['ParentStudy']) | |
| 6189 self.assertEqual('6816cb19-844d5aee-85245eba-28e841e6-2414fae2', i[0]['ParentPatient']) | |
| 6190 self.assertEqual('/instances/66a662ce-7430e543-bad44d47-0dc5a943-ec7a538d', i[0]['Path']) | |
| 6191 | |
| 6192 # Both are "Success" (instead of one "AlreadyStored"), because "OverwriteInstance" is true | |
| 6193 self.assertEqual('Success', i[0]['Status']) | |
|
361
6cf5cc4d0a99
test_transfer_syntax_no_metaheader
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359
diff
changeset
|
6194 |
|
6cf5cc4d0a99
test_transfer_syntax_no_metaheader
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parents:
359
diff
changeset
|
6195 |
|
6cf5cc4d0a99
test_transfer_syntax_no_metaheader
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359
diff
changeset
|
6196 def test_transfer_syntax_no_metaheader(self): |
|
6cf5cc4d0a99
test_transfer_syntax_no_metaheader
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diff
changeset
|
6197 a = UploadInstance(_REMOTE, 'TransferSyntaxes/1.2.840.10008.1.2.dcm')['ID'] |
|
6cf5cc4d0a99
test_transfer_syntax_no_metaheader
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diff
changeset
|
6198 m = DoGet(_REMOTE, '/instances/%s/metadata?expand' % a) |
|
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diff
changeset
|
6199 self.assertEqual('1.2.840.10008.5.1.4.1.1.4', m['SopClassUid']) |
|
6cf5cc4d0a99
test_transfer_syntax_no_metaheader
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diff
changeset
|
6200 |
|
6cf5cc4d0a99
test_transfer_syntax_no_metaheader
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359
diff
changeset
|
6201 # This fails on Orthanc <= 1.8.1 |
|
6cf5cc4d0a99
test_transfer_syntax_no_metaheader
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diff
changeset
|
6202 self.assertTrue('TransferSyntax' in m) |
|
6cf5cc4d0a99
test_transfer_syntax_no_metaheader
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diff
changeset
|
6203 self.assertEqual('1.2.840.10008.1.2', m['TransferSyntax']) |
|
368
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test_upload_multipart_1 and test_upload_multipart_2
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diff
changeset
|
6204 |
|
2cc40121c3a8
test_upload_multipart_1 and test_upload_multipart_2
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363
diff
changeset
|
6205 |
|
2cc40121c3a8
test_upload_multipart_1 and test_upload_multipart_2
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363
diff
changeset
|
6206 def test_upload_multipart_1(self): |
|
2cc40121c3a8
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diff
changeset
|
6207 # This tests the "Upload" button in Orthanc Explorer |
|
2cc40121c3a8
test_upload_multipart_1 and test_upload_multipart_2
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diff
changeset
|
6208 |
|
2cc40121c3a8
test_upload_multipart_1 and test_upload_multipart_2
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diff
changeset
|
6209 def EncodeChunk(data, boundary, filename): |
|
2cc40121c3a8
test_upload_multipart_1 and test_upload_multipart_2
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changeset
|
6210 return (('--%s\r\n' + |
|
2cc40121c3a8
test_upload_multipart_1 and test_upload_multipart_2
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diff
changeset
|
6211 'Content-Disposition : form-data ; name ="files[]" ; filename = "%s" \r\n' + |
|
2cc40121c3a8
test_upload_multipart_1 and test_upload_multipart_2
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diff
changeset
|
6212 '\r\n%s\r\n') % (boundary, filename, data)) |
|
2cc40121c3a8
test_upload_multipart_1 and test_upload_multipart_2
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diff
changeset
|
6213 |
|
2cc40121c3a8
test_upload_multipart_1 and test_upload_multipart_2
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parents:
363
diff
changeset
|
6214 with open(GetDatabasePath('DummyCT.dcm'), 'rb') as f: |
|
2cc40121c3a8
test_upload_multipart_1 and test_upload_multipart_2
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diff
changeset
|
6215 dcm1 = f.read() |
|
2cc40121c3a8
test_upload_multipart_1 and test_upload_multipart_2
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diff
changeset
|
6216 |
|
2cc40121c3a8
test_upload_multipart_1 and test_upload_multipart_2
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363
diff
changeset
|
6217 with open(GetDatabasePath('ColorTestMalaterre.dcm'), 'rb') as f: |
|
2cc40121c3a8
test_upload_multipart_1 and test_upload_multipart_2
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diff
changeset
|
6218 dcm2 = f.read() |
|
2cc40121c3a8
test_upload_multipart_1 and test_upload_multipart_2
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diff
changeset
|
6219 |
|
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test_upload_multipart_1 and test_upload_multipart_2
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diff
changeset
|
6220 self.assertEqual(0, len(DoGet(_REMOTE, '/instances'))) |
|
2cc40121c3a8
test_upload_multipart_1 and test_upload_multipart_2
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diff
changeset
|
6221 |
|
2cc40121c3a8
test_upload_multipart_1 and test_upload_multipart_2
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diff
changeset
|
6222 boundary = '----WebKitFormBoundarypJDNQqJPoXiorRmQ' |
|
2cc40121c3a8
test_upload_multipart_1 and test_upload_multipart_2
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diff
changeset
|
6223 m = DoPost(_REMOTE, '/instances', (EncodeChunk(dcm1, boundary, 'DummyCT.dcm') + |
|
2cc40121c3a8
test_upload_multipart_1 and test_upload_multipart_2
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diff
changeset
|
6224 EncodeChunk(dcm2, boundary, 'ColorTestMalaterre.dcm') + |
|
2cc40121c3a8
test_upload_multipart_1 and test_upload_multipart_2
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diff
changeset
|
6225 '--' + boundary + '--'), headers = { |
|
2cc40121c3a8
test_upload_multipart_1 and test_upload_multipart_2
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diff
changeset
|
6226 'Content-Type' : 'multipart/form-data ; boundary = %s ' % boundary, |
|
2cc40121c3a8
test_upload_multipart_1 and test_upload_multipart_2
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changeset
|
6227 'X-Requested-With' : 'XMLHttpRequest', |
|
2cc40121c3a8
test_upload_multipart_1 and test_upload_multipart_2
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diff
changeset
|
6228 }) |
|
2cc40121c3a8
test_upload_multipart_1 and test_upload_multipart_2
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diff
changeset
|
6229 |
|
2cc40121c3a8
test_upload_multipart_1 and test_upload_multipart_2
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diff
changeset
|
6230 self.assertEqual(2, len(DoGet(_REMOTE, '/instances'))) |
|
2cc40121c3a8
test_upload_multipart_1 and test_upload_multipart_2
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diff
changeset
|
6231 |
|
2cc40121c3a8
test_upload_multipart_1 and test_upload_multipart_2
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diff
changeset
|
6232 |
|
2cc40121c3a8
test_upload_multipart_1 and test_upload_multipart_2
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diff
changeset
|
6233 def test_upload_multipart_2(self): |
|
2cc40121c3a8
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changeset
|
6234 # This tests the "maxChunkSize" option of "jQuery File Upload |
|
2cc40121c3a8
test_upload_multipart_1 and test_upload_multipart_2
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changeset
|
6235 # 5.12", whose source code can be found in: |
|
2cc40121c3a8
test_upload_multipart_1 and test_upload_multipart_2
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changeset
|
6236 # "OrthancServer/OrthancExplorer/libs/jquery-file-upload/" |
|
2cc40121c3a8
test_upload_multipart_1 and test_upload_multipart_2
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changeset
|
6237 |
|
2cc40121c3a8
test_upload_multipart_1 and test_upload_multipart_2
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diff
changeset
|
6238 def EncodeBody(data, boundary, filename): |
|
2cc40121c3a8
test_upload_multipart_1 and test_upload_multipart_2
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diff
changeset
|
6239 return (('--%s\r\n' + |
|
2cc40121c3a8
test_upload_multipart_1 and test_upload_multipart_2
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diff
changeset
|
6240 'Content-Disposition: form-data; name="files[]"; filename="%s"\r\n' + |
|
2cc40121c3a8
test_upload_multipart_1 and test_upload_multipart_2
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diff
changeset
|
6241 '\r\n%s\r\n--%s') % (boundary, filename, data, boundary)) |
|
2cc40121c3a8
test_upload_multipart_1 and test_upload_multipart_2
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
363
diff
changeset
|
6242 |
|
2cc40121c3a8
test_upload_multipart_1 and test_upload_multipart_2
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
363
diff
changeset
|
6243 with open(GetDatabasePath('DummyCT.dcm'), 'rb') as f: |
|
2cc40121c3a8
test_upload_multipart_1 and test_upload_multipart_2
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
363
diff
changeset
|
6244 dcm = f.read() |
|
2cc40121c3a8
test_upload_multipart_1 and test_upload_multipart_2
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
363
diff
changeset
|
6245 |
|
2cc40121c3a8
test_upload_multipart_1 and test_upload_multipart_2
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
363
diff
changeset
|
6246 with open(GetDatabasePath('ColorTestMalaterre.dcm'), 'rb') as f: |
|
2cc40121c3a8
test_upload_multipart_1 and test_upload_multipart_2
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
363
diff
changeset
|
6247 dcm2 = f.read() |
|
2cc40121c3a8
test_upload_multipart_1 and test_upload_multipart_2
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
363
diff
changeset
|
6248 |
|
2cc40121c3a8
test_upload_multipart_1 and test_upload_multipart_2
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
363
diff
changeset
|
6249 boundary = '----WebKitFormBoundarypJDNQqJPoXiorRmQ' |
|
2cc40121c3a8
test_upload_multipart_1 and test_upload_multipart_2
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
363
diff
changeset
|
6250 |
|
2cc40121c3a8
test_upload_multipart_1 and test_upload_multipart_2
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
363
diff
changeset
|
6251 self.assertEqual(0, len(DoGet(_REMOTE, '/instances'))) |
|
2cc40121c3a8
test_upload_multipart_1 and test_upload_multipart_2
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
363
diff
changeset
|
6252 m = DoPost(_REMOTE, '/instances', |
|
2cc40121c3a8
test_upload_multipart_1 and test_upload_multipart_2
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
363
diff
changeset
|
6253 EncodeBody(dcm[0:1000], boundary, 'DummyCT.dcm'), |
|
2cc40121c3a8
test_upload_multipart_1 and test_upload_multipart_2
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
363
diff
changeset
|
6254 headers = { |
|
2cc40121c3a8
test_upload_multipart_1 and test_upload_multipart_2
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
363
diff
changeset
|
6255 'Content-Type' : 'multipart/form-data; boundary=%s' % boundary, |
|
2cc40121c3a8
test_upload_multipart_1 and test_upload_multipart_2
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
363
diff
changeset
|
6256 'X-Requested-With' : 'XMLHttpRequest', |
|
2cc40121c3a8
test_upload_multipart_1 and test_upload_multipart_2
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
363
diff
changeset
|
6257 'X-File-Name' : 'DummyCT.dcm', |
|
2cc40121c3a8
test_upload_multipart_1 and test_upload_multipart_2
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
363
diff
changeset
|
6258 'X-File-Size' : str(len(dcm)), |
|
2cc40121c3a8
test_upload_multipart_1 and test_upload_multipart_2
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
363
diff
changeset
|
6259 }) |
|
2cc40121c3a8
test_upload_multipart_1 and test_upload_multipart_2
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
363
diff
changeset
|
6260 |
|
2cc40121c3a8
test_upload_multipart_1 and test_upload_multipart_2
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
363
diff
changeset
|
6261 self.assertEqual(0, len(DoGet(_REMOTE, '/instances'))) |
|
2cc40121c3a8
test_upload_multipart_1 and test_upload_multipart_2
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
363
diff
changeset
|
6262 m = DoPost(_REMOTE, '/instances', |
|
2cc40121c3a8
test_upload_multipart_1 and test_upload_multipart_2
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
363
diff
changeset
|
6263 EncodeBody(dcm[1000:2000], boundary, 'DummyCT.dcm'), |
|
2cc40121c3a8
test_upload_multipart_1 and test_upload_multipart_2
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
363
diff
changeset
|
6264 headers = { |
|
2cc40121c3a8
test_upload_multipart_1 and test_upload_multipart_2
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
363
diff
changeset
|
6265 'Content-Type' : 'multipart/form-data; boundary=%s' % boundary, |
|
2cc40121c3a8
test_upload_multipart_1 and test_upload_multipart_2
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
363
diff
changeset
|
6266 'X-Requested-With' : 'XMLHttpRequest', |
|
2cc40121c3a8
test_upload_multipart_1 and test_upload_multipart_2
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
363
diff
changeset
|
6267 'X-File-Name' : 'DummyCT.dcm', |
|
2cc40121c3a8
test_upload_multipart_1 and test_upload_multipart_2
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
363
diff
changeset
|
6268 'X-File-Size' : str(len(dcm)), |
|
2cc40121c3a8
test_upload_multipart_1 and test_upload_multipart_2
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
363
diff
changeset
|
6269 }) |
|
2cc40121c3a8
test_upload_multipart_1 and test_upload_multipart_2
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
363
diff
changeset
|
6270 self.assertEqual(0, len(DoGet(_REMOTE, '/instances'))) |
|
2cc40121c3a8
test_upload_multipart_1 and test_upload_multipart_2
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
363
diff
changeset
|
6271 |
|
2cc40121c3a8
test_upload_multipart_1 and test_upload_multipart_2
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
363
diff
changeset
|
6272 m = DoPost(_REMOTE, '/instances', |
|
2cc40121c3a8
test_upload_multipart_1 and test_upload_multipart_2
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
363
diff
changeset
|
6273 EncodeBody(dcm2, boundary, 'ColorTestMalaterre.dcm'), |
|
2cc40121c3a8
test_upload_multipart_1 and test_upload_multipart_2
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
363
diff
changeset
|
6274 headers = { |
|
2cc40121c3a8
test_upload_multipart_1 and test_upload_multipart_2
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
363
diff
changeset
|
6275 'Content-Type' : 'multipart/form-data; boundary=%s' % boundary, |
|
2cc40121c3a8
test_upload_multipart_1 and test_upload_multipart_2
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
363
diff
changeset
|
6276 'X-Requested-With' : 'XMLHttpRequest', |
|
2cc40121c3a8
test_upload_multipart_1 and test_upload_multipart_2
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
363
diff
changeset
|
6277 'X-File-Name' : 'ColorTestMalaterre.dcm', |
|
2cc40121c3a8
test_upload_multipart_1 and test_upload_multipart_2
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
363
diff
changeset
|
6278 'X-File-Size' : str(len(dcm2)), |
|
2cc40121c3a8
test_upload_multipart_1 and test_upload_multipart_2
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
363
diff
changeset
|
6279 }) |
|
2cc40121c3a8
test_upload_multipart_1 and test_upload_multipart_2
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
363
diff
changeset
|
6280 |
|
2cc40121c3a8
test_upload_multipart_1 and test_upload_multipart_2
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
363
diff
changeset
|
6281 self.assertEqual(1, len(DoGet(_REMOTE, '/instances'))) |
|
2cc40121c3a8
test_upload_multipart_1 and test_upload_multipart_2
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
363
diff
changeset
|
6282 |
|
2cc40121c3a8
test_upload_multipart_1 and test_upload_multipart_2
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
363
diff
changeset
|
6283 # Upload the last chunk => the file is now entirely available |
|
2cc40121c3a8
test_upload_multipart_1 and test_upload_multipart_2
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
363
diff
changeset
|
6284 m = DoPost(_REMOTE, '/instances', |
|
2cc40121c3a8
test_upload_multipart_1 and test_upload_multipart_2
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
363
diff
changeset
|
6285 EncodeBody(dcm[2000:len(dcm)], boundary, 'DummyCT.dcm'), |
|
2cc40121c3a8
test_upload_multipart_1 and test_upload_multipart_2
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
363
diff
changeset
|
6286 headers = { |
|
2cc40121c3a8
test_upload_multipart_1 and test_upload_multipart_2
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
363
diff
changeset
|
6287 'Content-Type' : 'multipart/form-data; boundary=%s' % boundary, |
|
2cc40121c3a8
test_upload_multipart_1 and test_upload_multipart_2
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
363
diff
changeset
|
6288 'X-Requested-With' : 'XMLHttpRequest', |
|
2cc40121c3a8
test_upload_multipart_1 and test_upload_multipart_2
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
363
diff
changeset
|
6289 'X-File-Name' : 'DummyCT.dcm', |
|
2cc40121c3a8
test_upload_multipart_1 and test_upload_multipart_2
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
363
diff
changeset
|
6290 'X-File-Size' : str(len(dcm)), |
|
2cc40121c3a8
test_upload_multipart_1 and test_upload_multipart_2
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
363
diff
changeset
|
6291 }) |
|
2cc40121c3a8
test_upload_multipart_1 and test_upload_multipart_2
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
363
diff
changeset
|
6292 |
|
2cc40121c3a8
test_upload_multipart_1 and test_upload_multipart_2
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
363
diff
changeset
|
6293 self.assertEqual(2, len(DoGet(_REMOTE, '/instances'))) |