Mercurial > hg > orthanc-tests
annotate Tests/Tests.py @ 137:412d5f70447e
testing asynchronous c-move
| author | Sebastien Jodogne <s.jodogne@gmail.com> |
|---|---|
| date | Thu, 24 May 2018 21:43:40 +0200 |
| parents | 5634ef96fcc5 |
| children | 0682740fcfcb |
| rev | line source |
|---|---|
| 22 | 1 #!/usr/bin/env python |
| 2 # -*- coding: utf-8 -*- | |
| 3 | |
| 4 | |
| 3 | 5 # Orthanc - A Lightweight, RESTful DICOM Store |
| 73 | 6 # Copyright (C) 2012-2016 Sebastien Jodogne, Medical Physics |
| 3 | 7 # Department, University Hospital of Liege, Belgium |
|
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8 # Copyright (C) 2017-2018 Osimis S.A., Belgium |
| 3 | 9 # |
| 10 # This program is free software: you can redistribute it and/or | |
| 11 # modify it under the terms of the GNU General Public License as | |
| 12 # published by the Free Software Foundation, either version 3 of the | |
| 13 # License, or (at your option) any later version. | |
| 14 # | |
| 15 # This program is distributed in the hope that it will be useful, but | |
| 16 # WITHOUT ANY WARRANTY; without even the implied warranty of | |
| 17 # MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU | |
| 18 # General Public License for more details. | |
| 19 # | |
| 20 # You should have received a copy of the GNU General Public License | |
| 21 # along with this program. If not, see <http://www.gnu.org/licenses/>. | |
| 22 | |
| 23 | |
| 14 | 24 import tempfile |
| 3 | 25 import unittest |
| 36 | 26 import base64 |
| 3 | 27 |
| 11 | 28 from PIL import ImageChops |
| 3 | 29 from Toolbox import * |
| 13 | 30 from xml.dom import minidom |
| 3 | 31 |
| 32 _LOCAL = None | |
| 33 _REMOTE = None | |
| 34 | |
| 35 | |
| 36 def SetOrthancParameters(local, remote): | |
| 37 global _LOCAL, _REMOTE | |
| 38 _LOCAL = local | |
| 39 _REMOTE = remote | |
| 40 | |
| 41 | |
| 14 | 42 def ExtractDicomTags(rawDicom, tags): |
| 43 with tempfile.NamedTemporaryFile(delete = True) as f: | |
| 44 f.write(rawDicom) | |
| 45 f.flush() | |
| 45 | 46 data = subprocess.check_output([ FindExecutable('dcm2xml'), f.name ]) |
| 14 | 47 |
| 48 result = [] | |
| 49 for tag in tags: | |
| 50 match = re.search('<element[^>]+name="%s">([^>]*)</element>' % tag, data) | |
| 51 if match == None: | |
| 52 result.append('') | |
| 53 else: | |
| 54 result.append(match.group(1)) | |
| 55 | |
| 56 return result | |
| 57 | |
| 58 | |
| 15 | 59 def InstallLuaScript(path): |
| 60 with open(GetDatabasePath(path), 'r') as f: | |
| 61 DoPost(_REMOTE, '/tools/execute-script', f.read(), 'application/lua') | |
| 62 | |
| 63 | |
| 64 def UninstallLuaCallbacks(): | |
| 65 DoPost(_REMOTE, '/tools/execute-script', 'function OnStoredInstance() end', 'application/lua') | |
| 43 | 66 InstallLuaScript('Lua/TransferSyntaxEnable.lua') |
| 15 | 67 |
| 68 | |
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69 def CompareLists(a, b): |
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70 if len(a) != len(b): |
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71 return False |
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72 |
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73 for i in range(len(a)): |
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74 d = a[i] - b[i] |
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75 if abs(d) >= 0.51: # Add some tolerance for rounding errors |
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76 return False |
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77 |
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78 return True |
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79 |
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80 |
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81 def CompareTags(a, b, tagsToIgnore): |
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82 for i in tagsToIgnore: |
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83 if i in a: |
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84 del a[i] |
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85 if i in b: |
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86 del b[i] |
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87 |
| 123 | 88 if a.keys() == b.keys(): |
| 89 return True | |
| 90 else: | |
| 91 print('Mismatch in tags: %s' % str(set(a.keys()) ^ set(b.keys()))) | |
| 92 return False | |
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93 |
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94 |
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95 def CallFindScu(args): |
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96 p = subprocess.Popen([ FindExecutable('findscu'), |
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97 '-P', '-aec', _REMOTE['DicomAet'], '-aet', _LOCAL['DicomAet'], |
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98 _REMOTE['Server'], str(_REMOTE['DicomPort']) ] + args, |
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99 stderr=subprocess.PIPE) |
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100 return p.communicate()[1] |
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101 |
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102 |
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103 def CallMoveScu(args): |
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104 subprocess.check_call([ FindExecutable('movescu'), |
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105 '--move', _LOCAL['DicomAet'], # Target AET (i.e. storescp) |
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106 '--call', _REMOTE['DicomAet'], # Called AET (i.e. Orthanc) |
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107 '--aetitle', _LOCAL['DicomAet'], # Calling AET (i.e. storescp) |
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108 _REMOTE['Server'], str(_REMOTE['DicomPort']) ] + args, |
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109 stderr=subprocess.PIPE) |
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110 |
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111 |
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112 |
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113 def GenerateTestSequence(): |
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114 return [ |
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115 { |
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116 'StudyDescription': 'Hello^', |
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117 'ReferencedStudySequence' : [ |
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118 { |
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119 'StudyDescription': 'Toto', |
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120 }, |
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121 { |
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122 'StudyDescription': 'Tata', |
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123 }, |
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124 ] |
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125 }, |
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126 { |
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127 'StudyDescription': 'Sébastien^', |
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128 'StudyDate' : '19700202', |
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129 } |
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130 ] |
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131 |
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132 |
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133 |
| 15 | 134 |
| 3 | 135 class Orthanc(unittest.TestCase): |
| 136 def setUp(self): | |
| 83 | 137 if (sys.version_info >= (3, 0)): |
| 138 # Remove annoying warnings about unclosed socket in Python 3 | |
| 139 import warnings | |
| 140 warnings.simplefilter("ignore", ResourceWarning) | |
| 141 | |
| 3 | 142 DropOrthanc(_LOCAL) |
| 143 DropOrthanc(_REMOTE) | |
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144 UninstallLuaCallbacks() |
| 45 | 145 #print "In test", self._testMethodName |
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146 |
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147 def AssertSameImages(self, truth, url): |
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148 im = GetImage(_REMOTE, url) |
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149 self.assertTrue(CompareLists(truth, im.getdata())) |
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150 |
| 3 | 151 |
| 152 def test_system(self): | |
| 153 self.assertTrue('Version' in DoGet(_REMOTE, '/system')) | |
| 154 self.assertEqual('0', DoGet(_REMOTE, '/statistics')['TotalDiskSize']) | |
| 155 self.assertEqual('0', DoGet(_REMOTE, '/statistics')['TotalUncompressedSize']) | |
| 156 | |
| 157 def test_upload(self): | |
| 158 u = UploadInstance(_REMOTE, 'DummyCT.dcm') | |
| 159 self.assertEqual('Success', u['Status']) | |
| 160 u = UploadInstance(_REMOTE, 'DummyCT.dcm') | |
| 161 self.assertEqual('AlreadyStored', u['Status']) | |
| 162 self.assertEqual(1, len(DoGet(_REMOTE, '/patients'))) | |
| 163 self.assertEqual(1, len(DoGet(_REMOTE, '/studies'))) | |
| 164 self.assertEqual(1, len(DoGet(_REMOTE, '/series'))) | |
| 165 self.assertEqual(1, len(DoGet(_REMOTE, '/instances'))) | |
| 166 | |
| 167 i = DoGet(_REMOTE, '/instances/%s/simplified-tags' % u['ID']) | |
| 168 self.assertEqual('20070101', i['StudyDate']) | |
| 169 | |
| 170 | |
| 5 | 171 def test_upload_2(self): |
| 3 | 172 i = UploadInstance(_REMOTE, 'DummyCT.dcm')['ID'] |
| 173 instance = DoGet(_REMOTE, '/instances/%s' % i) | |
| 174 self.assertEqual(i, instance['ID']) | |
| 175 self.assertEqual('1.2.840.113619.2.176.2025.1499492.7040.1171286242.109', | |
| 176 instance['MainDicomTags']['SOPInstanceUID']) | |
| 177 | |
| 178 series = DoGet(_REMOTE, '/series/%s' % instance['ParentSeries']) | |
| 179 self.assertEqual('1.2.840.113619.2.176.2025.1499492.7391.1171285944.394', | |
| 180 series['MainDicomTags']['SeriesInstanceUID']) | |
| 181 | |
| 182 study = DoGet(_REMOTE, '/studies/%s' % series['ParentStudy']) | |
| 183 self.assertEqual('1.2.840.113619.2.176.2025.1499492.7391.1171285944.390', | |
| 184 study['MainDicomTags']['StudyInstanceUID']) | |
| 185 | |
| 186 patient = DoGet(_REMOTE, '/patients/%s' % study['ParentPatient']) | |
| 187 self.assertEqual('ozp00SjY2xG', | |
| 188 patient['MainDicomTags']['PatientID']) | |
| 189 | |
| 190 dicom = DoGet(_REMOTE, '/instances/%s/file' % instance['ID']) | |
| 191 self.assertEqual(2472, len(dicom)) | |
| 192 self.assertEqual('3e29b869978b6db4886355a2b1132124', ComputeMD5(dicom)) | |
| 193 self.assertEqual(1, len(DoGet(_REMOTE, '/instances/%s/frames' % i))) | |
| 194 self.assertEqual('TWINOW', DoGet(_REMOTE, '/instances/%s/simplified-tags' % i)['StationName']) | |
| 195 self.assertEqual('TWINOW', DoGet(_REMOTE, '/instances/%s/tags' % i)['0008,1010']['Value']) | |
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196 self.assertEqual('TWINOW', DoGet(_REMOTE, '/instances/%s/tags?simplify' % i)['StationName']) |
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197 self.assertEqual('TWINOW', DoGet(_REMOTE, '/instances/%s/tags?short' % i)['0008,1010']) |
| 3 | 198 |
| 199 | |
| 5 | 200 def test_images(self): |
| 201 i = UploadInstance(_REMOTE, 'Phenix/IM-0001-0001.dcm')['ID'] | |
| 202 self.assertEqual(1, len(DoGet(_REMOTE, '/instances/%s/frames' % i))) | |
| 3 | 203 |
| 5 | 204 im = GetImage(_REMOTE, '/instances/%s/preview' % i) |
| 205 self.assertEqual("L", im.mode) | |
| 206 self.assertEqual(512, im.size[0]) | |
| 207 self.assertEqual(358, im.size[1]) | |
| 208 | |
| 209 im = GetImage(_REMOTE, '/instances/%s/image-uint8' % i) | |
| 210 self.assertEqual("L", im.mode) | |
| 211 self.assertEqual(512, im.size[0]) | |
| 212 self.assertEqual(358, im.size[1]) | |
| 213 | |
| 214 im = GetImage(_REMOTE, '/instances/%s/image-uint16' % i) | |
| 215 self.assertEqual(512, im.size[0]) | |
| 216 self.assertEqual(358, im.size[1]) | |
| 217 | |
| 218 im = GetImage(_REMOTE, '/instances/%s/frames/0/preview' % i) | |
| 219 self.assertEqual("L", im.mode) | |
| 220 self.assertEqual(512, im.size[0]) | |
| 221 self.assertEqual(358, im.size[1]) | |
| 222 | |
| 223 im = GetImage(_REMOTE, '/instances/%s/frames/0/image-uint8' % i) | |
| 224 self.assertEqual("L", im.mode) | |
| 225 self.assertEqual(512, im.size[0]) | |
| 226 self.assertEqual(358, im.size[1]) | |
| 227 | |
| 228 im = GetImage(_REMOTE, '/instances/%s/frames/0/image-uint16' % i) | |
| 229 self.assertEqual(512, im.size[0]) | |
| 230 self.assertEqual(358, im.size[1]) | |
| 64 | 231 |
| 232 # This is Little Endian Explicit | |
| 233 self.assertEqual('1.2.840.10008.1.2.1', DoGet(_REMOTE, '/instances/%s/header?simplify' % i)['TransferSyntaxUID']) | |
| 234 | |
| 6 | 235 |
| 236 def test_hierarchy(self): | |
| 237 UploadFolder(_REMOTE, 'Brainix/Epi') | |
| 238 UploadFolder(_REMOTE, 'Brainix/Flair') | |
| 239 UploadFolder(_REMOTE, 'Knee/T1') | |
| 240 UploadFolder(_REMOTE, 'Knee/T2') | |
| 241 | |
| 242 p = DoGet(_REMOTE, '/patients') | |
| 243 s = DoGet(_REMOTE, '/studies') | |
| 244 t = DoGet(_REMOTE, '/series') | |
| 245 self.assertEqual(2, len(p)) | |
| 246 self.assertEqual(2, len(s)) | |
| 247 self.assertEqual(4, len(t)) | |
| 248 self.assertEqual(94, len(DoGet(_REMOTE, '/instances'))) | |
| 249 | |
| 250 brainixPatient = '16738bc3-e47ed42a-43ce044c-a3414a45-cb069bd0' | |
| 251 brainixStudy = '27f7126f-4f66fb14-03f4081b-f9341db2-53925988' | |
| 252 brainixEpi = '2ac1316d-3e432022-62eabff2-c59f5475-9b1ac3f8' | |
| 253 brainixFlair = '1e2c125c-411b8e86-3f4fe68e-a7584dd3-c6da78f0' | |
| 254 | |
| 255 kneePatient = 'ca29faea-b6a0e17f-067743a1-8b778011-a48b2a17' | |
| 256 kneeStudy = '0a9b3153-2512774b-2d9580de-1fc3dcf6-3bd83918' | |
| 257 kneeT1 = '6de73705-c4e65c1b-9d9ea1b5-cabcd8e7-f15e4285' | |
| 258 kneeT2 = 'bbf7a453-0d34251a-03663b55-46bb31b9-ffd74c59' | |
| 259 | |
| 260 self.assertTrue(brainixPatient in p) | |
| 261 self.assertTrue(kneePatient in p) | |
| 262 self.assertTrue(brainixStudy in s) | |
| 263 self.assertTrue(kneeStudy in s) | |
| 264 self.assertTrue(brainixEpi in t) | |
| 265 self.assertTrue(brainixFlair in t) | |
| 266 self.assertTrue(kneeT1 in t) | |
| 267 self.assertTrue(kneeT2 in t) | |
| 268 | |
| 269 self.assertEqual(44, len(DoGet(_REMOTE, '/patients/%s/instances' % brainixPatient))) | |
| 270 self.assertEqual(2, len(DoGet(_REMOTE, '/patients/%s/series' % brainixPatient))) | |
| 271 self.assertEqual(1, len(DoGet(_REMOTE, '/patients/%s/studies' % brainixPatient))) | |
| 272 | |
| 273 self.assertEqual(50, len(DoGet(_REMOTE, '/patients/%s/instances' % kneePatient))) | |
| 274 self.assertEqual(2, len(DoGet(_REMOTE, '/patients/%s/series' % kneePatient))) | |
| 275 self.assertEqual(1, len(DoGet(_REMOTE, '/patients/%s/studies' % kneePatient))) | |
| 276 | |
| 277 self.assertEqual(2, len(DoGet(_REMOTE, '/studies/%s/series' % brainixStudy))) | |
| 278 self.assertEqual(44, len(DoGet(_REMOTE, '/studies/%s/instances' % brainixStudy))) | |
| 279 | |
| 280 self.assertEqual(2, len(DoGet(_REMOTE, '/studies/%s/series' % kneeStudy))) | |
| 281 self.assertEqual(50, len(DoGet(_REMOTE, '/studies/%s/instances' % kneeStudy))) | |
| 282 | |
| 283 self.assertEqual(22, len(DoGet(_REMOTE, '/series/%s/instances' % brainixEpi))) | |
| 284 self.assertEqual(22, len(DoGet(_REMOTE, '/series/%s/instances' % brainixFlair))) | |
| 285 self.assertEqual(24, len(DoGet(_REMOTE, '/series/%s/instances' % kneeT1))) | |
| 286 self.assertEqual(26, len(DoGet(_REMOTE, '/series/%s/instances' % kneeT2))) | |
| 287 | |
| 288 for patient in p: | |
| 289 for study in DoGet(_REMOTE, '/patients/%s/studies' % patient): | |
| 290 self.assertEqual(patient, study['ParentPatient']) | |
| 291 for series in DoGet(_REMOTE, '/studies/%s/series' % study['ID']): | |
| 292 self.assertEqual(study['ID'], series['ParentStudy']) | |
| 293 for instance in DoGet(_REMOTE, '/series/%s/instances' % series['ID']): | |
| 294 self.assertEqual(series['ID'], instance['ParentSeries']) | |
| 295 | |
| 296 self.assertEqual(json.dumps(DoGet(_REMOTE, '/instances/%s/attachments/dicom-as-json/data' % instance['ID'])), | |
| 297 json.dumps(DoGet(_REMOTE, '/instances/%s/tags' % instance['ID']))) | |
| 298 | |
| 299 | |
| 300 r = DoDelete(_REMOTE, "/studies/%s" % brainixStudy)['RemainingAncestor'] | |
| 301 self.assertEqual(1, len(DoGet(_REMOTE, '/patients'))) | |
| 302 self.assertEqual(1, len(DoGet(_REMOTE, '/studies'))) | |
| 303 self.assertEqual(2, len(DoGet(_REMOTE, '/series'))) | |
| 304 self.assertEqual(50, len(DoGet(_REMOTE, '/instances'))) | |
| 305 self.assertEqual(None, r) | |
| 306 | |
| 307 r = DoDelete(_REMOTE, "/series/%s" % kneeT2)['RemainingAncestor'] | |
| 308 self.assertEqual(1, len(DoGet(_REMOTE, '/patients'))) | |
| 309 self.assertEqual(1, len(DoGet(_REMOTE, '/studies'))) | |
| 310 self.assertEqual(1, len(DoGet(_REMOTE, '/series'))) | |
| 311 self.assertEqual(24, len(DoGet(_REMOTE, '/instances'))) | |
| 312 self.assertEqual('Study', r['Type']) | |
| 313 self.assertEqual(kneeStudy, r['ID']) | |
| 314 | |
| 315 r = DoDelete(_REMOTE, "/instances/%s" % DoGet(_REMOTE, '/instances')[0])['RemainingAncestor'] | |
| 316 self.assertEqual(1, len(DoGet(_REMOTE, '/patients'))) | |
| 317 self.assertEqual(1, len(DoGet(_REMOTE, '/studies'))) | |
| 318 self.assertEqual(1, len(DoGet(_REMOTE, '/series'))) | |
| 319 self.assertEqual(23, len(DoGet(_REMOTE, '/instances'))) | |
| 320 self.assertEqual('Series', r['Type']) | |
| 321 self.assertEqual(kneeT1, r['ID']) | |
| 322 | |
| 323 r = DoDelete(_REMOTE, "/patients/%s" % kneePatient)['RemainingAncestor'] | |
| 324 self.assertEqual(0, len(DoGet(_REMOTE, '/patients'))) | |
| 325 self.assertEqual(0, len(DoGet(_REMOTE, '/studies'))) | |
| 326 self.assertEqual(0, len(DoGet(_REMOTE, '/series'))) | |
| 327 self.assertEqual(0, len(DoGet(_REMOTE, '/instances'))) | |
| 328 self.assertEqual(None, r) | |
| 329 | |
| 330 DropOrthanc(_REMOTE) | |
| 331 self.assertEqual('0', DoGet(_REMOTE, '/statistics')['TotalDiskSize']) | |
| 332 self.assertEqual('0', DoGet(_REMOTE, '/statistics')['TotalUncompressedSize']) | |
| 7 | 333 |
| 334 | |
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335 def test_multiframe(self): |
| 7 | 336 i = UploadInstance(_REMOTE, 'Multiframe.dcm')['ID'] |
| 337 self.assertEqual(76, len(DoGet(_REMOTE, '/instances/%s/frames' % i))) | |
| 338 | |
| 339 im = GetImage(_REMOTE, '/instances/%s/frames/0/preview' % i) | |
| 340 self.assertEqual("L", im.mode) | |
| 341 self.assertEqual(512, im.size[0]) | |
| 342 self.assertEqual(512, im.size[1]) | |
| 343 | |
| 344 DoGet(_REMOTE, '/instances/%s/frames/0/image-uint8' % i) | |
| 345 DoGet(_REMOTE, '/instances/%s/frames/0/image-uint16' % i) | |
| 346 DoGet(_REMOTE, '/instances/%s/frames/75/preview' % i) | |
| 347 self.assertRaises(Exception, lambda: DoGet(_REMOTE, '/instances/%s/frames/aaa/preview' % i)) | |
| 348 self.assertRaises(Exception, lambda: DoGet(_REMOTE, '/instances/%s/frames/76/preview' % i)) | |
| 349 | |
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350 |
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351 def test_changes(self): |
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352 # Check emptiness |
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353 c = DoGet(_REMOTE, '/changes') |
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354 self.assertEqual(0, len(c['Changes'])) |
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355 self.assertEqual(0, c['Last']) |
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356 self.assertTrue(c['Done']) |
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357 c = DoGet(_REMOTE, '/changes?last') |
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358 self.assertEqual(0, len(c['Changes'])) |
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359 self.assertEqual(0, c['Last']) |
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360 self.assertTrue(c['Done']) |
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361 |
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362 # Add 1 instance |
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363 i = UploadInstance(_REMOTE, 'Brainix/Flair/IM-0001-0001.dcm')['ID'] |
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364 c = DoGet(_REMOTE, '/changes') |
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365 begin = c['Last'] |
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366 self.assertEqual(4, len(c['Changes'])) |
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367 self.assertTrue(c['Done']) |
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368 self.assertEqual(c['Changes'][-1]['Seq'], c['Last']) |
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369 |
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370 c = DoGet(_REMOTE, '/changes?last') |
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371 self.assertEqual(1, len(c['Changes'])) |
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372 self.assertEqual(begin, c['Last']) |
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373 self.assertTrue(c['Done']) |
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374 c = DoGet(_REMOTE, '/changes?limit=1&since=' + str(begin - 1)) |
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375 self.assertEqual(1, len(c['Changes'])) |
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376 self.assertEqual(begin, c['Last']) |
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377 self.assertTrue(c['Done']) |
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378 c = DoGet(_REMOTE, '/changes?limit=1&since=' + str(begin - 2)) |
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379 self.assertEqual(1, len(c['Changes'])) |
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380 self.assertEqual(begin - 1, c['Last']) |
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381 self.assertFalse(c['Done']) |
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382 c = DoGet(_REMOTE, '/changes?limit=1&since=' + str(begin - 3)) |
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383 self.assertEqual(1, len(c['Changes'])) |
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384 self.assertEqual(begin - 2, c['Last']) |
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385 self.assertFalse(c['Done']) |
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386 |
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387 UploadFolder(_REMOTE, 'Knee/T1') |
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388 UploadFolder(_REMOTE, 'Knee/T2') |
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389 since = begin |
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390 countPatients = 0 |
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391 countStudies = 0 |
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392 countSeries = 0 |
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393 countInstances = 0 |
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394 completed = 0 |
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395 while True: |
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396 c = DoGet(_REMOTE, '/changes', { 'since' : since, 'limit' : 3 }) |
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397 since = c['Last'] |
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398 for i in c['Changes']: |
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399 if i['ResourceType'] == 'Instance': |
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400 countInstances += 1 |
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401 if i['ResourceType'] == 'Patient': |
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402 countPatients += 1 |
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403 if i['ResourceType'] == 'Study': |
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404 countStudies += 1 |
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405 if i['ResourceType'] == 'Series': |
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406 countSeries += 1 |
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407 if i['ChangeType'] == 'NewInstance': |
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408 countInstances += 1 |
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409 if i['ChangeType'] == 'NewPatient': |
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410 countPatients += 1 |
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411 if i['ChangeType'] == 'NewStudy': |
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412 countStudies += 1 |
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413 if i['ChangeType'] == 'NewSeries': |
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414 countSeries += 1 |
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415 if i['ChangeType'] == 'CompletedSeries': |
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416 completed += 1 |
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417 self.assertTrue('ID' in i) |
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418 self.assertTrue('Path' in i) |
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419 self.assertTrue('Seq' in i) |
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420 if c['Done']: |
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421 break |
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422 |
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423 self.assertEqual(2 * 50, countInstances) |
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424 self.assertEqual(2 * 1, countPatients) |
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425 self.assertEqual(2 * 1, countStudies) |
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426 self.assertEqual(2 * 2, countSeries) |
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427 self.assertEqual(0, completed) |
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428 |
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429 |
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430 def test_archive(self): |
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431 UploadInstance(_REMOTE, 'Knee/T1/IM-0001-0001.dcm') |
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432 UploadInstance(_REMOTE, 'Knee/T2/IM-0001-0001.dcm') |
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433 |
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434 z = GetArchive(_REMOTE, '/patients/%s/archive' % DoGet(_REMOTE, '/patients')[0]) |
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435 self.assertEqual(2, len(z.namelist())) |
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436 |
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437 z = GetArchive(_REMOTE, '/studies/%s/archive' % DoGet(_REMOTE, '/studies')[0]) |
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438 self.assertEqual(2, len(z.namelist())) |
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439 |
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440 z = GetArchive(_REMOTE, '/series/%s/archive' % DoGet(_REMOTE, '/series')[0]) |
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441 self.assertEqual(1, len(z.namelist())) |
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442 |
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443 UploadInstance(_REMOTE, 'Brainix/Flair/IM-0001-0001.dcm') |
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444 |
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445 z = GetArchive(_REMOTE, '/patients/%s/archive' % DoGet(_REMOTE, '/patients')[0]) |
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446 self.assertEqual(2, len(z.namelist())) |
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447 |
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448 |
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449 def test_media_archive(self): |
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450 UploadInstance(_REMOTE, 'Knee/T1/IM-0001-0001.dcm') |
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451 UploadInstance(_REMOTE, 'Knee/T2/IM-0001-0001.dcm') |
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452 |
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453 z = GetArchive(_REMOTE, '/patients/%s/media' % DoGet(_REMOTE, '/patients')[0]) |
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454 self.assertEqual(3, len(z.namelist())) |
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455 self.assertTrue('IMAGES/IM0' in z.namelist()) |
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456 self.assertTrue('IMAGES/IM1' in z.namelist()) |
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457 self.assertTrue('DICOMDIR' in z.namelist()) |
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458 |
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459 try: |
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460 os.remove('/tmp/DICOMDIR') |
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461 except: |
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462 # The file does not exist |
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463 pass |
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464 |
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465 z.extract('DICOMDIR', '/tmp') |
| 45 | 466 a = subprocess.check_output([ FindExecutable('dciodvfy'), '/tmp/DICOMDIR' ], |
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467 stderr = subprocess.STDOUT).split('\n') |
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468 self.assertEqual(3, len(a)) |
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469 self.assertTrue(a[0].startswith('Warning')) |
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470 self.assertEqual('BasicDirectory', a[1]) |
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471 self.assertEqual('', a[2]) |
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472 |
| 45 | 473 a = subprocess.check_output([ FindExecutable('dcentvfy'), '/tmp/DICOMDIR' ], |
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474 stderr = subprocess.STDOUT).split('\n') |
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475 self.assertEqual(1, len(a)) |
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476 self.assertEqual('', a[0]) |
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477 |
| 45 | 478 a = subprocess.check_output([ FindExecutable('dcm2xml'), '/tmp/DICOMDIR' ]) |
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479 self.assertTrue(re.search('1.3.46.670589.11.17521.5.0.3124.2008081908590448738', a) != None) |
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480 self.assertTrue(re.search('1.3.46.670589.11.17521.5.0.3124.2008081909113806560', a) != None) |
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481 |
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482 os.remove('/tmp/DICOMDIR') |
| 10 | 483 |
| 484 | |
| 485 def test_protection(self): | |
| 486 UploadInstance(_REMOTE, 'Knee/T1/IM-0001-0001.dcm') | |
| 487 UploadInstance(_REMOTE, 'Brainix/Flair/IM-0001-0001.dcm') | |
| 488 self.assertEqual(2, len(DoGet(_REMOTE, '/patients'))) | |
| 489 a = DoGet(_REMOTE, '/patients')[0] | |
| 490 b = DoGet(_REMOTE, '/patients')[1] | |
| 491 self.assertEqual(0, DoGet(_REMOTE, '/patients/%s/protected' % a)) | |
| 492 DoPut(_REMOTE, '/patients/%s/protected' % a, '0', 'text/plain') | |
| 493 self.assertEqual(0, DoGet(_REMOTE, '/patients/%s/protected' % a)) | |
| 494 DoPut(_REMOTE, '/patients/%s/protected' % a, '1', 'text/plain') | |
| 495 self.assertEqual(1, DoGet(_REMOTE, '/patients/%s/protected' % a)) | |
| 496 DoPut(_REMOTE, '/patients/%s/protected' % a, '0', 'text/plain') | |
| 497 self.assertEqual(0, DoGet(_REMOTE, '/patients/%s/protected' % a)) | |
| 498 | |
| 499 | |
| 12 | 500 def test_raw_tags(self): |
| 10 | 501 i = UploadInstance(_REMOTE, 'PrivateTags.dcm')['ID'] |
| 502 | |
| 503 dicom = DoGet(_REMOTE, '/instances/%s/file' % i) | |
| 504 self.assertEqual('1a7c56cb02d6e742cc9c856a8ac182e3', ComputeMD5(dicom)) | |
| 505 | |
| 506 s = '/instances/%s/content/' % i | |
| 507 | |
| 508 self.assertEqual('LOGIQBOOK', DoGet(_REMOTE, s + '0008-1010').strip()) | |
| 509 self.assertRaises(Exception, lambda: DoGet(_REMOTE, s + '0008-1011')) | |
| 510 | |
| 511 self.assertEqual('Abdomen', DoGet(_REMOTE, s + '7fe1-1001/0/7fe1-1008/0/7fe1-1057').strip()) | |
| 512 self.assertEqual('cla_3c', DoGet(_REMOTE, s + '7fe1-1001/0/7fe1-1008/8/7fe1-1057').strip()) | |
| 513 | |
| 514 UploadInstance(_REMOTE, 'Brainix/Epi/IM-0001-0001.dcm') | |
| 515 UploadInstance(_REMOTE, 'Brainix/Flair/IM-0001-0001.dcm') | |
| 516 UploadInstance(_REMOTE, 'Knee/T1/IM-0001-0001.dcm') | |
| 517 UploadInstance(_REMOTE, 'Knee/T2/IM-0001-0001.dcm') | |
| 518 | |
| 519 for i in DoGet(_REMOTE, '/instances'): | |
| 520 aid = DoGet(_REMOTE, '/instances/%s' % i)['MainDicomTags']['SOPInstanceUID'] | |
| 521 self.assertEqual(aid, DoGet(_REMOTE, '/instances/%s/content/0008-0018' % i).replace(chr(0), '')) | |
| 522 | |
| 523 | |
| 524 def test_raw_tags_mdn(self): | |
| 525 # Bug reported by Cyril Paulus | |
| 526 i = UploadInstance(_REMOTE, 'PrivateMDNTags.dcm')['ID'] | |
| 527 self.assertAlmostEqual(0.000027, DoGet(_REMOTE, '/instances/%s/content/7053-1000' % i)) | |
| 528 | |
| 529 | |
| 530 def test_modify_instance(self): | |
| 531 i = UploadInstance(_REMOTE, 'PrivateTags.dcm')['ID'] | |
| 532 modified = DoPost(_REMOTE, '/instances/%s/modify' % i, | |
| 533 json.dumps({ | |
| 534 "Replace" : { | |
| 535 "PatientName" : "hello", | |
| 536 #"PatientID" : "world" | |
| 537 }, | |
| 538 "Remove" : [ "StationName" ], | |
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539 "RemovePrivateTags" : True |
| 10 | 540 }), |
| 541 'application/json') | |
| 542 j = DoPost(_REMOTE, '/instances', modified, 'application/dicom')['ID'] | |
| 543 | |
| 544 self.assertNotEqual('hello', DoGet(_REMOTE, '/instances/%s/content/0010-0010' % i).strip()) | |
| 545 #self.assertNotEqual('world', DoGet(_REMOTE, '/instances/%s/content/0010-0020' % i).strip()) | |
| 83 | 546 self.assertEqual('LOGIQBOOK', DoGet(_REMOTE, '/instances/%s/content/0008-1010' % i).strip()) |
| 10 | 547 DoGet(_REMOTE, '/instances/%s/content/6003-1010' % i) # Some private tag |
| 548 | |
| 549 self.assertEqual('hello', DoGet(_REMOTE, '/instances/%s/content/0010-0010' % j).strip()) | |
| 550 #self.assertEqual('world', DoGet(_REMOTE, '/instances/%s/content/0010-0020' % j).strip()) | |
| 551 self.assertRaises(Exception, lambda: DoGet(_REMOTE, '/instances/%s/content/0008-1010' % j)) | |
| 552 self.assertRaises(Exception, lambda: DoGet(_REMOTE, '/instances/%s/content/6003-1010' % j)) | |
| 553 | |
| 554 | |
| 555 def test_modify_series(self): | |
| 556 # Upload 4 images from the same series | |
| 557 for i in range(4): | |
| 558 UploadInstance(_REMOTE, 'Brainix/Epi/IM-0001-000%d.dcm' % (i + 1)) | |
| 559 | |
| 560 origSeries = DoGet(_REMOTE, '/series')[0] | |
| 561 newSeries = DoPost(_REMOTE, '/series/%s/modify' % origSeries, | |
| 562 '{"Replace":{"PatientName":"Jodogne"}}', | |
| 563 'application/json')['ID'] | |
| 564 | |
| 565 self.assertEqual(origSeries, DoGet(_REMOTE, '/series/%s' % newSeries)['ModifiedFrom']) | |
| 566 instances = DoGet(_REMOTE, '/series/%s' % newSeries)['Instances'] | |
| 567 self.assertEqual(4, len(instances)) | |
| 568 for i in instances: | |
| 569 j = DoGet(_REMOTE, '/instances/%s' % i)['ModifiedFrom'] | |
| 570 self.assertEqual(newSeries, DoGet(_REMOTE, '/instances/%s' % i)['ParentSeries']) | |
| 571 self.assertEqual(origSeries, DoGet(_REMOTE, '/instances/%s' % j)['ParentSeries']) | |
| 572 | |
| 573 self.assertEqual('Jodogne', DoGet(_REMOTE, '/instances/%s/content/0010-0010' % i).strip()) | |
| 574 self.assertNotEqual('Jodogne', DoGet(_REMOTE, '/instances/%s/content/0010-0010' % j).strip()) | |
| 575 | |
| 576 | |
| 577 def test_modify_study(self): | |
| 578 # Upload 4 images from the 2 series of the same study | |
| 579 for i in range(4): | |
| 580 UploadInstance(_REMOTE, 'Brainix/Flair/IM-0001-000%d.dcm' % (i + 1)) | |
| 581 UploadInstance(_REMOTE, 'Brainix/Epi/IM-0001-000%d.dcm' % (i + 1)) | |
| 582 | |
| 583 origStudy = DoGet(_REMOTE, '/studies')[0] | |
| 584 newStudy = DoPost(_REMOTE, '/studies/%s/modify' % origStudy, | |
| 585 '{"Replace":{"PatientName":"Jodogne"}}', | |
| 586 'application/json')['ID'] | |
| 587 | |
| 588 self.assertEqual(origStudy, DoGet(_REMOTE, '/studies/%s' % newStudy)['ModifiedFrom']) | |
| 589 series = DoGet(_REMOTE, '/studies/%s' % newStudy)['Series'] | |
| 590 self.assertEqual(2, len(series)) | |
| 591 for s in series: | |
| 592 ss = DoGet(_REMOTE, '/series/%s' % s)['ModifiedFrom'] | |
| 593 self.assertEqual(newStudy, DoGet(_REMOTE, '/series/%s' % s)['ParentStudy']) | |
| 594 self.assertEqual(origStudy, DoGet(_REMOTE, '/series/%s' % ss)['ParentStudy']) | |
| 595 | |
| 596 instances = DoGet(_REMOTE, '/series/%s' % s)['Instances'] | |
| 597 for i in instances: | |
| 598 j = DoGet(_REMOTE, '/instances/%s' % i)['ModifiedFrom'] | |
| 599 self.assertEqual(s, DoGet(_REMOTE, '/instances/%s' % i)['ParentSeries']) | |
| 600 self.assertEqual(ss, DoGet(_REMOTE, '/instances/%s' % j)['ParentSeries']) | |
| 601 | |
| 602 self.assertEqual('Jodogne', DoGet(_REMOTE, '/instances/%s/content/0010-0010' % i).strip()) | |
| 603 self.assertNotEqual('Jodogne', DoGet(_REMOTE, '/instances/%s/content/0010-0010' % j).strip()) | |
| 604 | |
| 605 | |
| 606 def test_anonymize_series(self): | |
| 607 # Upload 4 images from the same series | |
| 608 for i in range(4): | |
| 609 UploadInstance(_REMOTE, 'Brainix/Epi/IM-0001-000%d.dcm' % (i + 1)) | |
| 610 | |
| 611 origSeries = DoGet(_REMOTE, '/series')[0] | |
| 612 newSeries = DoPost(_REMOTE, '/series/%s/anonymize' % origSeries, | |
| 613 '{}', | |
| 614 'application/json')['ID'] | |
| 615 | |
| 616 self.assertEqual(origSeries, DoGet(_REMOTE, '/series/%s' % newSeries)['AnonymizedFrom']) | |
| 617 instances = DoGet(_REMOTE, '/series/%s' % newSeries)['Instances'] | |
| 618 self.assertEqual(4, len(instances)) | |
| 619 for i in instances: | |
| 620 j = DoGet(_REMOTE, '/instances/%s' % i)['AnonymizedFrom'] | |
| 621 self.assertEqual(newSeries, DoGet(_REMOTE, '/instances/%s' % i)['ParentSeries']) | |
| 622 self.assertEqual(origSeries, DoGet(_REMOTE, '/instances/%s' % j)['ParentSeries']) | |
| 623 | |
| 624 DoGet(_REMOTE, '/instances/%s/content/0008-1010' % j) | |
| 625 self.assertRaises(Exception, lambda: DoGet(_REMOTE, '/instances/%s/content/0008-1010' % i)) | |
| 626 | |
| 627 | |
| 628 def test_anonymize_study(self): | |
| 629 # Upload 4 images from the 2 series of the same study | |
| 630 for i in range(4): | |
| 631 UploadInstance(_REMOTE, 'Brainix/Flair/IM-0001-000%d.dcm' % (i + 1)) | |
| 632 UploadInstance(_REMOTE, 'Brainix/Epi/IM-0001-000%d.dcm' % (i + 1)) | |
| 633 | |
| 634 origStudy = DoGet(_REMOTE, '/studies')[0] | |
| 635 newStudy = DoPost(_REMOTE,'/studies/%s/anonymize' % origStudy, | |
| 636 '{"Replace":{"PatientName":"Jodogne"}}', | |
| 637 'application/json')['ID'] | |
| 638 | |
| 639 self.assertEqual(origStudy, DoGet(_REMOTE, '/studies/%s' % newStudy)['AnonymizedFrom']) | |
| 640 series = DoGet(_REMOTE, '/studies/%s' % newStudy)['Series'] | |
| 641 self.assertEqual(2, len(series)) | |
| 642 for s in series: | |
| 643 ss = DoGet(_REMOTE, '/series/%s' % s)['AnonymizedFrom'] | |
| 644 self.assertEqual(newStudy, DoGet(_REMOTE, '/series/%s' % s)['ParentStudy']) | |
| 645 self.assertEqual(origStudy, DoGet(_REMOTE, '/series/%s' % ss)['ParentStudy']) | |
| 646 | |
| 647 instances = DoGet(_REMOTE, '/series/%s' % s)['Instances'] | |
| 648 for i in instances: | |
| 649 j = DoGet(_REMOTE, '/instances/%s' % i)['AnonymizedFrom'] | |
| 650 self.assertEqual(s, DoGet(_REMOTE, '/instances/%s' % i)['ParentSeries']) | |
| 651 self.assertEqual(ss, DoGet(_REMOTE, '/instances/%s' % j)['ParentSeries']) | |
| 652 | |
| 653 self.assertEqual('Jodogne', DoGet(_REMOTE, '/instances/%s/content/0010-0010' % i).strip()) | |
| 654 self.assertNotEqual('Jodogne', DoGet(_REMOTE, '/instances/%s/content/0010-0010' % j).strip()) | |
| 11 | 655 |
| 656 | |
| 657 | |
| 658 def test_storescu(self): | |
| 659 # Check emptiness | |
| 660 e = DoGet(_REMOTE, '/exports') | |
| 661 self.assertEqual(0, len(e['Exports'])) | |
| 662 self.assertEqual(0, e['Last']) | |
| 663 self.assertTrue(e['Done']) | |
| 664 e = DoGet(_REMOTE, '/exports?last') | |
| 665 self.assertEqual(0, len(e['Exports'])) | |
| 666 self.assertEqual(0, e['Last']) | |
| 667 self.assertTrue(e['Done']) | |
| 668 | |
| 669 # Add 1 instance | |
| 670 i = UploadInstance(_REMOTE, 'DummyCT.dcm')['ID'] | |
| 671 self.assertEqual(0, len(DoGet(_LOCAL, '/patients'))) | |
| 672 | |
| 673 # Export the instance | |
| 674 j = DoPost(_REMOTE, '/modalities/orthanctest/store', str(i), 'text/plain') # instance | |
| 675 self.assertEqual(1, len(DoGet(_LOCAL, '/patients'))) | |
| 676 self.assertEqual(1, len(DoGet(_LOCAL, '/studies'))) | |
| 677 self.assertEqual(1, len(DoGet(_LOCAL, '/series'))) | |
| 678 self.assertEqual(1, len(DoGet(_LOCAL, '/instances'))) | |
| 679 | |
| 680 e = DoGet(_REMOTE, '/exports') | |
| 681 self.assertEqual(1, len(e['Exports'])) | |
| 682 self.assertTrue(e['Done']) | |
| 683 self.assertEqual(e['Exports'][-1]['Seq'], e['Last']) | |
| 684 e = DoGet(_REMOTE, '/exports?limit=1') | |
| 685 self.assertEqual(1, len(e['Exports'])) | |
| 686 self.assertTrue(e['Done']) | |
| 687 self.assertEqual(e['Exports'][-1]['Seq'], e['Last']) | |
| 688 e = DoGet(_REMOTE, '/exports?last') | |
| 689 self.assertEqual(1, len(e['Exports'])) | |
| 690 self.assertTrue(e['Done']) | |
| 691 self.assertEqual(e['Exports'][-1]['Seq'], e['Last']) | |
| 692 seqInstance = e['Last'] | |
| 693 | |
| 694 # Export the series | |
| 695 j = DoPost(_REMOTE, '/modalities/orthanctest/store', 'f2635388-f01d497a-15f7c06b-ad7dba06-c4c599fe', 'text/plain') | |
| 696 | |
| 697 e = DoGet(_REMOTE, '/exports') | |
| 698 self.assertEqual(2, len(e['Exports'])) | |
| 699 self.assertTrue(e['Done']) | |
| 700 self.assertEqual(e['Exports'][-1]['Seq'], e['Last']) | |
| 701 seqSeries = e['Last'] | |
| 702 self.assertNotEqual(seqInstance, seqSeries) | |
| 703 e = DoGet(_REMOTE, '/exports?limit=1&since=0') | |
| 704 self.assertEqual(1, len(e['Exports'])) | |
| 705 self.assertFalse(e['Done']) | |
| 706 self.assertEqual(e['Exports'][-1]['Seq'], seqInstance) | |
| 707 e = DoGet(_REMOTE, '/exports?limit=1&since=' + str(seqInstance)) | |
| 708 self.assertEqual(1, len(e['Exports'])) | |
| 709 self.assertTrue(e['Done']) | |
| 710 self.assertEqual(e['Exports'][-1]['Seq'], seqSeries) | |
| 711 e = DoGet(_REMOTE, '/exports?last') | |
| 712 self.assertEqual(1, len(e['Exports'])) | |
| 713 self.assertTrue(e['Done']) | |
| 714 self.assertEqual(e['Exports'][-1]['Seq'], seqSeries) | |
| 715 | |
| 716 # Export the study | |
| 717 j = DoPost(_REMOTE, '/modalities/orthanctest/store', 'b9c08539-26f93bde-c81ab0d7-bffaf2cb-a4d0bdd0', 'text/plain') | |
| 718 seqStudy = DoGet(_REMOTE, '/exports')['Last'] | |
| 719 | |
| 720 # Export the patient | |
| 721 j = DoPost(_REMOTE, '/modalities/orthanctest/store', '6816cb19-844d5aee-85245eba-28e841e6-2414fae2', 'text/plain') | |
| 722 self.assertEqual(1, len(DoGet(_LOCAL, '/patients'))) | |
| 723 self.assertEqual(1, len(DoGet(_LOCAL, '/studies'))) | |
| 724 self.assertEqual(1, len(DoGet(_LOCAL, '/series'))) | |
| 725 self.assertEqual(1, len(DoGet(_LOCAL, '/instances'))) | |
| 726 | |
| 727 e = DoGet(_REMOTE, '/exports') | |
| 728 self.assertEqual(4, len(e['Exports'])) | |
| 729 self.assertTrue(e['Done']) | |
| 730 self.assertEqual(e['Exports'][-1]['Seq'], e['Last']) | |
| 731 seqPatient = e['Last'] | |
| 732 self.assertNotEqual(seqInstance, seqSeries) | |
| 733 self.assertNotEqual(seqSeries, seqStudy) | |
| 734 self.assertNotEqual(seqStudy, seqPatient) | |
| 735 self.assertTrue(seqInstance < seqSeries) | |
| 736 self.assertTrue(seqSeries < seqStudy) | |
| 737 self.assertTrue(seqStudy < seqPatient) | |
| 738 e = DoGet(_REMOTE, '/exports?limit=1&since=0') | |
| 739 self.assertEqual(1, len(e['Exports'])) | |
| 740 self.assertFalse(e['Done']) | |
| 741 self.assertEqual(e['Exports'][-1]['Seq'], seqInstance) | |
| 742 e = DoGet(_REMOTE, '/exports?limit=1&since=' + str(seqInstance)) | |
| 743 self.assertEqual(1, len(e['Exports'])) | |
| 744 self.assertFalse(e['Done']) | |
| 745 self.assertEqual(e['Exports'][-1]['Seq'], seqSeries) | |
| 746 e = DoGet(_REMOTE, '/exports?limit=1&since=' + str(seqSeries)) | |
| 747 self.assertEqual(1, len(e['Exports'])) | |
| 748 self.assertFalse(e['Done']) | |
| 749 self.assertEqual(e['Exports'][-1]['Seq'], seqStudy) | |
| 750 e = DoGet(_REMOTE, '/exports?limit=1&since=' + str(seqStudy)) | |
| 751 self.assertEqual(1, len(e['Exports'])) | |
| 752 self.assertTrue(e['Done']) | |
| 753 self.assertEqual(e['Exports'][-1]['Seq'], seqPatient) | |
| 754 e = DoGet(_REMOTE, '/exports?last') | |
| 755 self.assertEqual(1, len(e['Exports'])) | |
| 756 self.assertTrue(e['Done']) | |
| 757 self.assertEqual(e['Exports'][-1]['Seq'], seqPatient) | |
| 758 | |
| 759 | |
| 760 # Check the content of the logged information | |
| 761 e = DoGet(_REMOTE, '/exports')['Exports'] | |
| 762 | |
| 763 if 'PatientID' in e[0]: | |
| 764 # Since Orthanc 0.8.6 | |
| 765 patient = 'PatientID' | |
| 766 study = 'StudyInstanceUID' | |
| 767 series = 'SeriesInstanceUID' | |
| 768 instance = 'SOPInstanceUID' | |
| 769 else: | |
| 770 # Up to Orthanc 0.8.5 | |
| 771 patient = 'PatientId' | |
| 772 study = 'StudyInstanceUid' | |
| 773 series = 'SeriesInstanceUid' | |
| 774 instance = 'SopInstanceUid' | |
| 775 | |
| 776 for k in range(4): | |
| 777 self.assertTrue('Date' in e[k]) | |
| 778 self.assertTrue('Seq' in e[k]) | |
| 779 self.assertEqual('orthanctest', e[k]['RemoteModality']) | |
| 780 | |
| 781 self.assertEqual(10, len(e[0])) | |
| 782 self.assertEqual('Instance', e[0]['ResourceType']) | |
| 783 self.assertEqual('66a662ce-7430e543-bad44d47-0dc5a943-ec7a538d', e[0]['ID']) | |
| 784 self.assertEqual('/instances/66a662ce-7430e543-bad44d47-0dc5a943-ec7a538d', e[0]['Path']) | |
| 785 self.assertEqual('1.2.840.113619.2.176.2025.1499492.7040.1171286242.109', e[0][instance]) | |
| 786 self.assertEqual('1.2.840.113619.2.176.2025.1499492.7391.1171285944.394', e[0][series]) | |
| 787 self.assertEqual('1.2.840.113619.2.176.2025.1499492.7391.1171285944.390', e[0][study]) | |
| 788 self.assertEqual('ozp00SjY2xG', e[0][patient]) | |
| 789 | |
| 790 self.assertEqual(9, len(e[1])) | |
| 791 self.assertEqual('Series', e[1]['ResourceType']) | |
| 792 self.assertEqual('f2635388-f01d497a-15f7c06b-ad7dba06-c4c599fe', e[1]['ID']) | |
| 793 self.assertEqual('/series/f2635388-f01d497a-15f7c06b-ad7dba06-c4c599fe', e[1]['Path']) | |
| 794 self.assertEqual('1.2.840.113619.2.176.2025.1499492.7391.1171285944.394', e[1][series]) | |
| 795 self.assertEqual('1.2.840.113619.2.176.2025.1499492.7391.1171285944.390', e[1][study]) | |
| 796 self.assertEqual('ozp00SjY2xG', e[1][patient]) | |
| 797 | |
| 798 self.assertEqual(8, len(e[2])) | |
| 799 self.assertEqual('Study', e[2]['ResourceType']) | |
| 800 self.assertEqual('b9c08539-26f93bde-c81ab0d7-bffaf2cb-a4d0bdd0', e[2]['ID']) | |
| 801 self.assertEqual('/studies/b9c08539-26f93bde-c81ab0d7-bffaf2cb-a4d0bdd0', e[2]['Path']) | |
| 802 self.assertEqual('1.2.840.113619.2.176.2025.1499492.7391.1171285944.390', e[2][study]) | |
| 803 self.assertEqual('ozp00SjY2xG', e[2][patient]) | |
| 804 | |
| 805 self.assertEqual(7, len(e[3])) | |
| 806 self.assertEqual('Patient', e[3]['ResourceType']) | |
| 807 self.assertEqual('6816cb19-844d5aee-85245eba-28e841e6-2414fae2', e[3]['ID']) | |
| 808 self.assertEqual('/patients/6816cb19-844d5aee-85245eba-28e841e6-2414fae2', e[3]['Path']) | |
| 809 self.assertEqual('ozp00SjY2xG', e[3][patient]) | |
| 810 | |
| 811 DropOrthanc(_REMOTE) | |
| 812 self.assertEqual(0, len(DoGet(_REMOTE, '/exports')['Exports'])) | |
| 813 | |
| 814 | |
| 815 def test_store_peer(self): | |
| 816 self.assertEqual(0, len(DoGet(_LOCAL, '/exports')['Exports'])) | |
| 817 self.assertEqual(0, len(DoGet(_REMOTE, '/exports')['Exports'])) | |
| 818 | |
| 819 i = UploadInstance(_REMOTE, 'DummyCT.dcm')['ID'] | |
| 820 self.assertEqual(0, len(DoGet(_LOCAL, '/patients'))) | |
| 821 self.assertEqual(1, len(DoGet(_REMOTE, '/patients'))) | |
| 822 | |
| 823 j = DoPost(_REMOTE, '/peers/peer/store', str(i), 'text/plain') | |
| 824 self.assertEqual(1, len(DoGet(_LOCAL, '/patients'))) | |
| 825 self.assertEqual(1, len(DoGet(_REMOTE, '/patients'))) | |
| 826 | |
| 827 self.assertEqual(1, len(DoGet(_REMOTE, '/exports')['Exports'])) | |
| 828 | |
| 829 DropOrthanc(_REMOTE) | |
| 830 self.assertEqual(0, len(DoGet(_REMOTE, '/exports')['Exports'])) | |
| 831 | |
| 832 | |
| 833 def test_bulk_storescu(self): | |
| 834 self.assertEqual(0, len(DoGet(_LOCAL, '/patients'))) | |
| 835 | |
| 836 a = UploadInstance(_REMOTE, 'Knee/T1/IM-0001-0001.dcm') | |
| 837 b = UploadInstance(_REMOTE, 'Knee/T2/IM-0001-0001.dcm') | |
| 838 | |
| 839 j = DoPost(_REMOTE, '/modalities/orthanctest/store', [ a['ID'], b['ID'] ], 'application/json') | |
| 840 self.assertEqual(2, len(DoGet(_LOCAL, '/instances'))) | |
| 841 | |
| 842 DropOrthanc(_LOCAL) | |
| 843 | |
| 844 # Send using patient's UUID | |
| 845 self.assertEqual(0, len(DoGet(_LOCAL, '/instances'))) | |
| 846 j = DoPost(_REMOTE, '/modalities/orthanctest/store', | |
| 847 [ 'ca29faea-b6a0e17f-067743a1-8b778011-a48b2a17' ], 'application/json') | |
| 848 self.assertEqual(2, len(DoGet(_LOCAL, '/instances'))) | |
| 849 | |
| 850 | |
| 851 def test_color(self): | |
| 852 i = UploadInstance(_REMOTE, 'ColorTestMalaterre.dcm')['ID'] | |
| 853 im = GetImage(_REMOTE, '/instances/%s/preview' % i) | |
| 854 self.assertEqual("RGB", im.mode) | |
| 855 self.assertEqual(41, im.size[0]) | |
| 856 self.assertEqual(41, im.size[1]) | |
| 857 | |
| 858 # http://effbot.org/zone/pil-comparing-images.htm | |
| 13 | 859 truth = Image.open(GetDatabasePath('ColorTestMalaterre.png')) |
| 11 | 860 self.assertTrue(ImageChops.difference(im, truth).getbbox() is None) |
| 861 | |
| 862 | |
| 12 | 863 def test_faking_ruby_put(self): |
| 864 UploadInstance(_REMOTE, 'Knee/T1/IM-0001-0001.dcm') | |
| 865 UploadInstance(_REMOTE, 'Brainix/Flair/IM-0001-0001.dcm') | |
| 866 self.assertEqual(2, len(DoGet(_REMOTE, '/patients'))) | |
| 867 a = DoGet(_REMOTE, '/patients')[0] | |
| 868 b = DoGet(_REMOTE, '/patients')[1] | |
| 869 self.assertEqual(0, DoGet(_REMOTE, '/patients/%s/protected' % a)) | |
| 870 DoGet(_REMOTE, '/patients/%s/protected' % a, data = { '_method' : 'PUT' }, body = '0') | |
| 871 self.assertEqual(0, DoGet(_REMOTE, '/patients/%s/protected' % a)) | |
| 872 DoGet(_REMOTE, '/patients/%s/protected' % a, data = { '_method' : 'PUT' }, body = '1') | |
| 873 self.assertEqual(1, DoGet(_REMOTE, '/patients/%s/protected' % a)) | |
| 874 DoGet(_REMOTE, '/patients/%s/protected' % a, data = { '_method' : 'PUT' }, body = '0') | |
| 875 self.assertEqual(0, DoGet(_REMOTE, '/patients/%s/protected' % a)) | |
| 876 | |
| 877 | |
| 878 def test_faking_ruby_delete(self): | |
| 879 UploadInstance(_REMOTE, 'Knee/T1/IM-0001-0001.dcm') | |
| 880 UploadInstance(_REMOTE, 'Brainix/Flair/IM-0001-0001.dcm') | |
| 881 self.assertEqual(2, len(DoGet(_REMOTE, '/patients'))) | |
| 882 a = DoGet(_REMOTE, '/patients')[0] | |
| 883 b = DoGet(_REMOTE, '/patients')[1] | |
| 884 DoGet(_REMOTE, '/patients/%s' % a, data = { '_method' : 'DELETE' }) | |
| 885 self.assertEqual(1, len(DoGet(_REMOTE, '/patients'))) | |
| 886 DoGet(_REMOTE, '/patients/%s' % b, data = { '_method' : 'DELETE' }) | |
| 887 self.assertEqual(0, len(DoGet(_REMOTE, '/patients'))) | |
| 888 | |
| 889 | |
| 890 def test_faking_google_put(self): | |
| 891 UploadInstance(_REMOTE, 'Knee/T1/IM-0001-0001.dcm') | |
| 892 UploadInstance(_REMOTE, 'Brainix/Flair/IM-0001-0001.dcm') | |
| 893 self.assertEqual(2, len(DoGet(_REMOTE, '/patients'))) | |
| 894 a = DoGet(_REMOTE, '/patients')[0] | |
| 895 b = DoGet(_REMOTE, '/patients')[1] | |
| 896 self.assertEqual(0, DoGet(_REMOTE, '/patients/%s/protected' % a)) | |
| 897 DoPost(_REMOTE, '/patients/%s/protected' % a, headers = { 'X-HTTP-Method-Override' : 'PUT' }, data = '0') | |
| 898 self.assertEqual(0, DoGet(_REMOTE, '/patients/%s/protected' % a)) | |
| 899 DoPost(_REMOTE, '/patients/%s/protected' % a, headers = { 'X-HTTP-Method-Override' : 'PUT' }, data = '1') | |
| 900 self.assertEqual(1, DoGet(_REMOTE, '/patients/%s/protected' % a)) | |
| 901 DoPost(_REMOTE, '/patients/%s/protected' % a, headers = { 'X-HTTP-Method-Override' : 'PUT' }, data = '0') | |
| 902 self.assertEqual(0, DoGet(_REMOTE, '/patients/%s/protected' % a)) | |
| 903 | |
| 904 | |
| 905 def test_faking_google_delete(self): | |
| 906 UploadInstance(_REMOTE, 'Knee/T1/IM-0001-0001.dcm') | |
| 907 UploadInstance(_REMOTE, 'Brainix/Flair/IM-0001-0001.dcm') | |
| 908 self.assertEqual(2, len(DoGet(_REMOTE, '/patients'))) | |
| 909 a = DoGet(_REMOTE, '/patients')[0] | |
| 910 b = DoGet(_REMOTE, '/patients')[1] | |
| 911 DoPost(_REMOTE, '/patients/%s' % a, headers = { 'X-HTTP-Method-Override' : 'DELETE' }) | |
| 912 self.assertEqual(1, len(DoGet(_REMOTE, '/patients'))) | |
| 913 DoPost(_REMOTE, '/patients/%s' % b, headers = { 'X-HTTP-Method-Override' : 'DELETE' }) | |
| 914 self.assertEqual(0, len(DoGet(_REMOTE, '/patients'))) | |
| 915 | |
| 916 | |
| 917 def test_lua(self): | |
| 918 self.assertEqual(42, DoPost(_REMOTE, '/tools/execute-script', 'print(42)')) | |
| 919 self.assertTrue(IsDefinedInLua(_REMOTE, 'PrintRecursive')) | |
| 920 self.assertFalse(IsDefinedInLua(_REMOTE, 'HelloWorld')) | |
| 921 | |
| 922 | |
| 923 def test_metadata(self): | |
| 924 UploadInstance(_REMOTE, 'Knee/T1/IM-0001-0001.dcm') | |
| 925 p = DoGet(_REMOTE, '/patients')[0] | |
| 926 i = DoGet(_REMOTE, '/instances')[0] | |
| 927 | |
| 928 m = DoGet(_REMOTE, '/patients/%s/metadata' % p) | |
| 929 self.assertEqual(1, len(m)) | |
| 930 self.assertEqual('LastUpdate', m[0]) | |
| 931 | |
| 932 m = DoGet(_REMOTE, '/instances/%s/metadata' % i) | |
|
95
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parents:
92
diff
changeset
|
933 self.assertEqual(6, len(m)) |
| 12 | 934 self.assertTrue('IndexInSeries' in m) |
| 935 self.assertTrue('ReceptionDate' in m) | |
| 936 self.assertTrue('RemoteAET' in m) | |
|
63
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parents:
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diff
changeset
|
937 self.assertTrue('Origin' in m) |
|
89
74b7b9aed5f8
test TransferSyntax metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
changeset
|
938 self.assertTrue('TransferSyntax' in m) |
|
95
a807a4699eb4
testing of metadata SopClassUid
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
92
diff
changeset
|
939 self.assertTrue('SopClassUid' in m) |
|
63
2652d562267a
test Origin metadata of instances
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
changeset
|
940 self.assertEqual(DoGet(_REMOTE, '/instances/%s/metadata/IndexInSeries' % i), 1) |
|
2652d562267a
test Origin metadata of instances
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parents:
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diff
changeset
|
941 self.assertEqual(DoGet(_REMOTE, '/instances/%s/metadata/Origin' % i), 'RestApi') |
|
2652d562267a
test Origin metadata of instances
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parents:
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diff
changeset
|
942 self.assertEqual(DoGet(_REMOTE, '/instances/%s/metadata/RemoteAET' % i), '') # None, received by REST API |
|
89
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parents:
87
diff
changeset
|
943 self.assertEqual(DoGet(_REMOTE, '/instances/%s/metadata/TransferSyntax' % i), '1.2.840.10008.1.2.4.91') # JPEG2k |
|
95
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parents:
92
diff
changeset
|
944 self.assertEqual(DoGet(_REMOTE, '/instances/%s/metadata/SopClassUid' % i), '1.2.840.10008.5.1.4.1.1.4') |
| 12 | 945 |
| 946 # Play with custom metadata | |
| 947 DoPut(_REMOTE, '/patients/%s/metadata/5555' % p, 'coucou') | |
| 948 m = DoGet(_REMOTE, '/patients/%s/metadata' % p) | |
| 949 self.assertEqual(2, len(m)) | |
| 950 self.assertTrue('LastUpdate' in m) | |
| 951 self.assertTrue('5555' in m) | |
| 952 self.assertEqual('coucou', DoGet(_REMOTE, '/patients/%s/metadata/5555' % p)) | |
| 953 DoPut(_REMOTE, '/patients/%s/metadata/5555' % p, 'hello') | |
| 954 self.assertEqual('hello', DoGet(_REMOTE, '/patients/%s/metadata/5555' % p)) | |
| 955 DoDelete(_REMOTE, '/patients/%s/metadata/5555' % p) | |
| 956 m = DoGet(_REMOTE, '/patients/%s/metadata' % p) | |
| 957 self.assertEqual(1, len(m)) | |
| 958 self.assertTrue('LastUpdate' in m) | |
| 13 | 959 |
| 960 | |
| 961 def test_statistics(self): | |
| 962 # Upload 16 instances | |
| 963 for i in range(4): | |
| 964 UploadInstance(_REMOTE, 'Brainix/Flair/IM-0001-000%d.dcm' % (i + 1)) | |
| 965 UploadInstance(_REMOTE, 'Brainix/Epi/IM-0001-000%d.dcm' % (i + 1)) | |
| 966 UploadInstance(_REMOTE, 'Knee/T1/IM-0001-000%d.dcm' % (i + 1)) | |
| 967 UploadInstance(_REMOTE, 'Knee/T2/IM-0001-000%d.dcm' % (i + 1)) | |
| 968 | |
| 969 s = DoGet(_REMOTE, '/statistics') | |
| 970 self.assertEqual(16, s['CountInstances']) | |
| 971 self.assertEqual(2, s['CountPatients']) | |
| 972 self.assertEqual(2, s['CountStudies']) | |
| 973 self.assertEqual(4, s['CountSeries']) | |
| 974 d = int(s['TotalUncompressedSize']) | |
| 975 | |
| 976 e = 0 | |
| 977 for patient in DoGet(_REMOTE, '/patients'): | |
| 978 s = DoGet(_REMOTE, '/patients/%s/statistics' % patient) | |
| 979 self.assertEqual(8, s['CountInstances']) | |
| 980 self.assertEqual(1, s['CountStudies']) | |
| 981 self.assertEqual(2, s['CountSeries']) | |
| 982 e += int(s['UncompressedSize']) | |
| 983 | |
| 984 for study in DoGet(_REMOTE, '/studies'): | |
| 985 s = DoGet(_REMOTE, '/studies/%s/statistics' % study) | |
| 986 self.assertEqual(8, s['CountInstances']) | |
| 987 self.assertEqual(2, s['CountSeries']) | |
| 988 e += int(s['UncompressedSize']) | |
| 989 | |
| 990 for series in DoGet(_REMOTE, '/series'): | |
| 991 s = DoGet(_REMOTE, '/series/%s/statistics' % series) | |
| 992 self.assertEqual(4, s['CountInstances']) | |
| 993 e += int(s['UncompressedSize']) | |
| 994 | |
| 995 self.assertEqual(3 * d, e) | |
| 996 | |
| 997 | |
| 998 def test_custom_attachment(self): | |
| 999 UploadInstance(_REMOTE, 'Brainix/Flair/IM-0001-0001.dcm') | |
| 1000 patient = DoGet(_REMOTE, '/patients')[0] | |
| 1001 instance = DoGet(_REMOTE, '/instances')[0] | |
| 1002 size = int(DoGet(_REMOTE, '/patients/%s/statistics' % patient)['DiskSize']) | |
| 1003 self.assertEqual(size, int(DoGet(_REMOTE, '/statistics')['TotalDiskSize'])) | |
| 1004 | |
| 1005 self.assertEqual(0, len(DoGet(_REMOTE, '/patients/%s/attachments' % patient))) | |
| 1006 self.assertEqual(2, len(DoGet(_REMOTE, '/instances/%s/attachments' % instance))) | |
| 1007 self.assertTrue('dicom' in DoGet(_REMOTE, '/instances/%s/attachments' % instance)) | |
| 1008 self.assertTrue('dicom-as-json' in DoGet(_REMOTE, '/instances/%s/attachments' % instance)) | |
| 1009 | |
| 1010 self.assertRaises(Exception, lambda: DoPut(_REMOTE, '/patients/%s/attachments/22' % patient, 'hello')) | |
| 1011 hello = 'hellohellohellohellohellohellohellohellohello' | |
| 1012 DoPut(_REMOTE, '/patients/%s/attachments/1025' % patient, hello) | |
| 1013 self.assertEqual(int(DoGet(_REMOTE, '/patients/%s/statistics' % patient)['DiskSize']), | |
| 1014 int(DoGet(_REMOTE, '/statistics')['TotalDiskSize'])) | |
| 1015 self.assertEqual(int(DoGet(_REMOTE, '/patients/%s/statistics' % patient)['DiskSize']), | |
| 1016 size + int(DoGet(_REMOTE, '/patients/%s/attachments/1025/compressed-size' % patient))) | |
| 1017 | |
| 1018 DoPut(_REMOTE, '/patients/%s/attachments/1026' % patient, 'world') | |
| 1019 self.assertEqual(int(DoGet(_REMOTE, '/patients/%s/statistics' % patient)['DiskSize']), | |
| 1020 int(DoGet(_REMOTE, '/statistics')['TotalDiskSize'])) | |
| 1021 self.assertEqual(int(DoGet(_REMOTE, '/patients/%s/statistics' % patient)['DiskSize']), | |
| 1022 size + | |
| 1023 int(DoGet(_REMOTE, '/patients/%s/attachments/1025/compressed-size' % patient)) + | |
| 1024 int(DoGet(_REMOTE, '/patients/%s/attachments/1026/compressed-size' % patient))) | |
| 1025 | |
| 1026 self.assertEqual(2, len(DoGet(_REMOTE, '/patients/%s/attachments' % patient))) | |
| 1027 self.assertEqual(hello, DoGet(_REMOTE, '/patients/%s/attachments/1025/data' % patient)) | |
| 1028 self.assertEqual('world', DoGet(_REMOTE, '/patients/%s/attachments/1026/data' % patient)) | |
| 1029 DoPost(_REMOTE, '/patients/%s/attachments/1025/verify-md5' % patient) | |
| 1030 DoPost(_REMOTE, '/patients/%s/attachments/1026/verify-md5' % patient) | |
| 1031 DoPut(_REMOTE, '/patients/%s/attachments/1026' % patient, 'world2') | |
| 1032 self.assertEqual('world2', DoGet(_REMOTE, '/patients/%s/attachments/1026/data' % patient)) | |
| 1033 | |
| 1034 self.assertRaises(Exception, lambda: DoDelete(_REMOTE, '/instances/%s/attachments/dicom' % instance)) | |
| 1035 DoDelete(_REMOTE, '/patients/%s/attachments/1025' % patient) | |
| 1036 self.assertEqual(int(DoGet(_REMOTE, '/patients/%s/statistics' % patient)['DiskSize']), | |
| 1037 int(DoGet(_REMOTE, '/statistics')['TotalDiskSize'])) | |
| 1038 self.assertEqual(int(DoGet(_REMOTE, '/patients/%s/statistics' % patient)['DiskSize']), | |
| 1039 size + int(DoGet(_REMOTE, '/patients/%s/attachments/1026/compressed-size' % patient))) | |
| 1040 | |
| 1041 self.assertEqual(1, len(DoGet(_REMOTE, '/patients/%s/attachments' % patient))) | |
| 1042 DoDelete(_REMOTE, '/patients/%s/attachments/1026' % patient) | |
| 1043 self.assertEqual(0, len(DoGet(_REMOTE, '/patients/%s/attachments' % patient))) | |
| 1044 | |
| 1045 self.assertEqual(int(DoGet(_REMOTE, '/patients/%s/statistics' % patient)['DiskSize']), size) | |
| 1046 self.assertEqual(size, int(DoGet(_REMOTE, '/statistics')['TotalDiskSize'])) | |
| 1047 | |
| 1048 | |
| 1049 def test_incoming_storescu(self): | |
| 1050 self.assertEqual(0, len(DoGet(_REMOTE, '/patients'))) | |
| 45 | 1051 subprocess.check_call([ FindExecutable('storescu'), |
|
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1052 _REMOTE['Server'], str(_REMOTE['DicomPort']), |
| 13 | 1053 GetDatabasePath('ColorTestImageJ.dcm') ]) |
| 1054 self.assertEqual(1, len(DoGet(_REMOTE, '/patients'))) | |
| 1055 | |
|
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1056 i = DoGet(_REMOTE, '/instances') |
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1057 self.assertEqual(1, len(i)) |
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1058 m = DoGet(_REMOTE, '/instances/%s/metadata' % i[0]) |
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1059 self.assertEqual(6, len(m)) |
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1060 self.assertTrue('IndexInSeries' in m) |
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1061 self.assertTrue('ReceptionDate' in m) |
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1062 self.assertTrue('RemoteAET' in m) |
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1063 self.assertTrue('Origin' in m) |
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1064 self.assertTrue('TransferSyntax' in m) |
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1065 self.assertTrue('SopClassUid' in m) |
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1066 self.assertEqual(DoGet(_REMOTE, '/instances/%s/metadata/IndexInSeries' % i[0]), 1) |
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1067 self.assertEqual(DoGet(_REMOTE, '/instances/%s/metadata/Origin' % i[0]), 'DicomProtocol') |
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1068 self.assertEqual(DoGet(_REMOTE, '/instances/%s/metadata/RemoteAET' % i[0]), 'STORESCU') |
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1069 self.assertEqual(DoGet(_REMOTE, '/instances/%s/metadata/TransferSyntax' % i[0]), '1.2.840.10008.1.2.1') |
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1070 self.assertEqual(DoGet(_REMOTE, '/instances/%s/metadata/SopClassUid' % i[0]), '1.2.840.10008.5.1.4.1.1.7') |
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1071 |
| 13 | 1072 |
| 1073 def test_incoming_findscu(self): | |
| 1074 UploadInstance(_REMOTE, 'Multiframe.dcm') | |
| 1075 UploadInstance(_REMOTE, 'ColorTestImageJ.dcm') | |
| 1076 | |
| 1077 i = CallFindScu([ '-k', '0008,0052=PATIENT', '-k', '0010,0010' ]) | |
| 1078 patientNames = re.findall('\(0010,0010\).*?\[(.*?)\]', i) | |
| 1079 self.assertEqual(2, len(patientNames)) | |
| 1080 self.assertTrue('Test Patient BG ' in patientNames) | |
| 1081 self.assertTrue('Anonymized' in patientNames) | |
| 1082 | |
| 1083 i = CallFindScu([ '-k', '0008,0052=SERIES', '-k', '0008,0021' ]) | |
| 1084 series = re.findall('\(0008,0021\).*?\[\s*(.*?)\s*\]', i) | |
| 1085 self.assertEqual(2, len(series)) | |
| 1086 self.assertTrue('20070208' in series) | |
| 1087 self.assertTrue('19980312' in series) | |
| 1088 | |
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1089 i = CallFindScu([ '-k', '0008,0052=SERIES', '-k', '0008,0021', '-k', 'ModalitiesInStudy=MR\\XA' ]) |
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1090 series = re.findall('\(0008,0021\).*?\[\s*(.*?)\s*\]', i) |
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1091 self.assertEqual(1, len(series)) |
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1092 self.assertTrue('19980312' in series) |
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1093 |
| 13 | 1094 i = CallFindScu([ '-k', '0008,0052=SERIES', '-k', 'PatientName=Anonymized' ]) |
| 1095 series = re.findall('\(0010,0010\).*?\[\s*(.*?)\s*\]', i) | |
| 1096 self.assertEqual(1, len(series)) | |
| 1097 | |
| 1098 # Test the "CaseSentitivePN" flag (false by default) | |
| 1099 i = CallFindScu([ '-k', '0008,0052=SERIES', '-k', 'PatientName=anonymized' ]) | |
| 1100 series = re.findall('\(0010,0010\).*?\[\s*(.*?)\s*\]', i) | |
| 1101 self.assertEqual(1, len(series)) | |
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1102 |
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1103 # Test returning sequence values (only since Orthanc 0.9.5) |
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1104 i = CallFindScu([ '-k', '0008,0052=SERIES', '-k', '0008,2112' ]) # "ColorTestImageJ" has this sequence tag |
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1105 sequences = re.findall('\(0008,2112\)', i) |
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1106 self.assertEqual(1, len(sequences)) |
| 70 | 1107 |
| 1108 # Test range search (buggy if Orthanc <= 0.9.6) | |
| 1109 i = CallFindScu([ '-k', '0008,0052=STUDY', '-k', 'StudyDate=19980312-' ]) | |
| 1110 studies = re.findall('\(0008,0020\).*?\[\s*(.*?)\s*\]', i) | |
| 1111 self.assertEqual(2, len(studies)) | |
| 1112 self.assertTrue('20070208' in studies) | |
| 1113 self.assertTrue('19980312' in studies) | |
| 1114 i = CallFindScu([ '-k', '0008,0052=STUDY', '-k', 'StudyDate=19980312-19980312' ]) | |
| 1115 studies = re.findall('\(0008,0020\).*?\[\s*(.*?)\s*\]', i) | |
| 1116 self.assertEqual(1, len(studies)) | |
| 1117 self.assertTrue('19980312' in studies) | |
| 1118 i = CallFindScu([ '-k', '0008,0052=STUDY', '-k', 'StudyDate=-19980312' ]) | |
| 1119 studies = re.findall('\(0008,0020\).*?\[\s*(.*?)\s*\]', i) | |
| 1120 self.assertEqual(1, len(studies)) | |
| 1121 self.assertTrue('19980312' in studies) | |
| 13 | 1122 |
| 1123 | |
| 1124 def test_incoming_movescu(self): | |
| 1125 UploadInstance(_REMOTE, 'Multiframe.dcm') | |
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1126 |
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1127 # No matching patient, so no job is created |
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1128 self.assertEqual(0, len(DoGet(_LOCAL, '/patients'))) |
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1129 CallMoveScu([ '--patient', '-k', '0008,0052=PATIENT', '-k', 'PatientID=none' ]) |
| 13 | 1130 self.assertEqual(0, len(DoGet(_LOCAL, '/patients'))) |
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1131 |
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1132 # 1 Matching patient, track the job |
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1133 a = set(DoGet(_REMOTE, '/jobs')) |
| 13 | 1134 CallMoveScu([ '--patient', '-k', '0008,0052=PATIENT', '-k', 'PatientID=12345678' ]) |
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1135 b = set(DoGet(_REMOTE, '/jobs')) |
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1136 |
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1137 diff = list(b - a) |
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1138 self.assertEqual(1, len(diff)) |
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1139 self.assertTrue(WaitJobDone(_REMOTE, diff[0])) |
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1140 |
| 13 | 1141 self.assertEqual(1, len(DoGet(_LOCAL, '/patients'))) |
| 1142 | |
| 1143 | |
| 1144 def test_findscu(self): | |
| 1145 i = UploadInstance(_REMOTE, 'DummyCT.dcm')['ID'] | |
| 1146 j = UploadInstance(_REMOTE, 'Issue22.dcm')['ID'] | |
| 1147 k = UploadInstance(_REMOTE, 'ColorTestImageJ.dcm')['ID'] | |
| 1148 DoPost(_REMOTE, '/modalities/orthanctest/store', str(i), 'text/plain') | |
| 1149 | |
| 1150 # Test the "find-patient" level | |
| 1151 p = DoPost(_REMOTE, '/modalities/orthanctest/find-patient', { }) | |
| 1152 self.assertEqual(1, len(p)) | |
| 1153 self.assertEqual('ozp00SjY2xG', p[0]['PatientID']) | |
| 1154 | |
| 1155 # Test wildcards constraints. The "LO" value representation | |
| 1156 # for PatientID is always case-sensitive, but the "PN" for | |
| 1157 # PatientName might depend on the implementation: | |
| 1158 # "GenerateConfigurationForTests.py" will force it to be case | |
| 1159 # insensitive (which was the default until Orthanc 0.8.6). | |
| 1160 p = DoPost(_REMOTE, '/modalities/orthanctest/find-patient', { 'PatientName' : 'K*' }) | |
| 1161 self.assertEqual(1, len(p)) | |
| 1162 | |
| 1163 p = DoPost(_REMOTE, '/modalities/orthanctest/find-patient', { 'PatientName' : 'k*' }) | |
| 1164 self.assertEqual(1, len(p)) | |
| 1165 | |
| 1166 p = DoPost(_REMOTE, '/modalities/orthanctest/find-patient', { 'PatientID' : 'ozp*' }) | |
| 1167 self.assertEqual(1, len(p)) | |
| 1168 | |
| 1169 p = DoPost(_REMOTE, '/modalities/orthanctest/find-patient', { 'PatientID' : 'o?p*' }) | |
| 1170 self.assertEqual(1, len(p)) | |
| 1171 | |
| 1172 p = DoPost(_REMOTE, '/modalities/orthanctest/find-patient', { 'PatientID' : '0?q*' }) | |
| 1173 self.assertEqual(0, len(p)) | |
| 1174 | |
| 1175 p = DoPost(_REMOTE, '/modalities/orthanctest/find-patient', { 'PatientName' : 'B*' }) | |
| 1176 self.assertEqual(0, len(p)) | |
| 1177 | |
| 1178 p = DoPost(_REMOTE, '/modalities/orthanctest/find-patient', { 'PatientName' : 'b*' }) | |
| 1179 self.assertEqual(0, len(p)) | |
| 1180 | |
| 1181 DoPost(_REMOTE, '/modalities/orthanctest/store', str(j), 'text/plain') | |
| 1182 DoPost(_REMOTE, '/modalities/orthanctest/store', str(k), 'text/plain') | |
| 1183 DoPost(_REMOTE, '/modalities/orthanctest/find-patient', { }) | |
| 1184 self.assertEqual(3, len(DoPost(_REMOTE, '/modalities/orthanctest/find-patient', { }))) | |
| 1185 | |
| 1186 p = DoPost(_REMOTE, '/modalities/orthanctest/find-patient', { 'PatientName' : 'A*' }) | |
| 1187 self.assertEqual(2, len(p)) | |
| 1188 | |
| 1189 # Test the "find-study" level. This is the instance "ColorTestImageJ.dcm" | |
| 1190 s = DoPost(_REMOTE, '/modalities/orthanctest/find-study', { 'PatientID' : 'B9uTHKOZ' }) | |
| 1191 self.assertEqual(1, len(s)) | |
| 1192 self.assertEqual('20070208', s[0]['StudyDate']) | |
| 1193 | |
| 1194 # Test range searches | |
| 1195 t = DoPost(_REMOTE, '/modalities/orthanctest/find-study', { 'PatientID' : 'B9uTHKOZ', | |
| 1196 'StudyDate' : '-20070101' }) | |
| 1197 self.assertEqual(0, len(t)) | |
| 1198 | |
| 1199 t = DoPost(_REMOTE, '/modalities/orthanctest/find-study', { 'PatientID' : 'B9uTHKOZ', | |
| 1200 'StudyDate' : '20090101-' }) | |
| 1201 self.assertEqual(0, len(t)) | |
| 1202 | |
| 1203 t = DoPost(_REMOTE, '/modalities/orthanctest/find-study', { 'PatientID' : 'B9uTHKOZ', | |
| 1204 'StudyDate' : '20070101-' }) | |
| 1205 self.assertEqual(1, len(t)) | |
| 1206 | |
| 1207 t = DoPost(_REMOTE, '/modalities/orthanctest/find-study', { 'PatientID' : 'B9uTHKOZ', | |
| 1208 'StudyDate' : '-20090101' }) | |
| 1209 self.assertEqual(1, len(t)) | |
| 1210 | |
| 1211 t = DoPost(_REMOTE, '/modalities/orthanctest/find-study', { 'PatientID' : 'B9uTHKOZ', | |
| 1212 'StudyDate' : '20070207-20070207' }) | |
| 1213 self.assertEqual(0, len(t)) | |
| 1214 | |
| 1215 t = DoPost(_REMOTE, '/modalities/orthanctest/find-study', { 'PatientID' : 'B9uTHKOZ', | |
| 1216 'StudyDate' : '20070208-20070208' }) | |
| 1217 self.assertEqual(1, len(t)) | |
| 1218 | |
| 1219 t = DoPost(_REMOTE, '/modalities/orthanctest/find-study', { 'PatientID' : 'B9uTHKOZ', | |
| 1220 'StudyDate' : '20070209-20070209' }) | |
| 1221 self.assertEqual(0, len(t)) | |
| 1222 | |
| 1223 # Test the ModalitiesInStudy tag | |
| 1224 t = DoPost(_REMOTE, '/modalities/orthanctest/find-study', { | |
| 1225 'PatientID' : 'B9uTHKOZ', | |
| 1226 'ModalitiesInStudy' : 'US' }) | |
| 1227 self.assertEqual(0, len(t)) | |
| 1228 | |
| 1229 t = DoPost(_REMOTE, '/modalities/orthanctest/find-study', { | |
| 1230 'PatientID' : 'B9uTHKOZ', | |
| 1231 'ModalitiesInStudy' : 'CT' }) | |
| 1232 self.assertEqual(1, len(t)) | |
| 1233 | |
| 1234 t = DoPost(_REMOTE, '/modalities/orthanctest/find-study', { | |
| 1235 'PatientID' : 'B9uTHKOZ', | |
| 1236 'ModalitiesInStudy' : 'US\\CT' }) | |
| 1237 self.assertEqual(1, len(t)) | |
| 1238 | |
| 1239 # Test the "find-series" level | |
| 1240 t = DoPost(_REMOTE, '/modalities/orthanctest/find-series', { | |
| 1241 'PatientID' : 'B9uTHKOZ', | |
| 1242 'StudyInstanceUID' : s[0]['StudyInstanceUID'] }) | |
| 1243 self.assertEqual(1, len(t)) | |
| 1244 | |
| 1245 # Test "\" separator | |
| 1246 t = DoPost(_REMOTE, '/modalities/orthanctest/find-series', { | |
| 1247 'PatientID' : 'B9uTHKOZ', | |
| 1248 'StudyInstanceUID' : s[0]['StudyInstanceUID'], | |
| 1249 'Modality' : 'MR\\CT\\US' }) | |
| 1250 self.assertEqual(1, len(t)) | |
| 1251 | |
| 1252 t = DoPost(_REMOTE, '/modalities/orthanctest/find-series', { | |
| 1253 'PatientID' : 'B9uTHKOZ', | |
| 1254 'StudyInstanceUID' : s[0]['StudyInstanceUID'], | |
| 1255 'Modality' : 'MR\\US' }) | |
| 1256 self.assertEqual(0, len(t)) | |
| 1257 | |
| 1258 | |
| 1259 def test_update_modalities(self): | |
| 1260 try: | |
| 1261 DoDelete(_REMOTE, '/modalities/toto') | |
| 1262 except: | |
| 1263 pass | |
| 1264 try: | |
| 1265 DoDelete(_REMOTE, '/modalities/tata') | |
| 1266 except: | |
| 1267 pass | |
| 1268 self.assertRaises(Exception, lambda: DoGet(_REMOTE, '/modalities/toto')) | |
| 1269 DoPut(_REMOTE, '/modalities/toto', [ "STORESCP", "localhost", 2000 ]) | |
| 116 | 1270 DoPut(_REMOTE, '/modalities/tata', [ "STORESCP", "localhost", 2000, 'MedInria' ]) # check backward compatiblity with obsolete manufacturer |
| 1271 DoDelete(_REMOTE, '/modalities/tata') | |
| 124 | 1272 DoPut(_REMOTE, '/modalities/tata', [ "STORESCP", "localhost", 2000, 'GenericNoUniversalWildcard' ]) |
|
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1273 DoDelete(_REMOTE, '/modalities/tata') |
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1274 DoPut(_REMOTE, '/modalities/tata', [ "STORESCP", "localhost", 2000, 'GenericNoWildcardInDates' ]) |
| 128 | 1275 modalitiesReadback = DoGet(_REMOTE, '/modalities?expand') |
| 1276 self.assertEqual([ "STORESCP", "localhost", 2000, 'GenericNoWildcardInDates' ], modalitiesReadback['tata']) | |
| 116 | 1277 self.assertRaises(Exception, lambda: DoPut(_REMOTE, '/modalities/toto', [ "STORESCP", "localhost", 2000, 'InvalidManufacturerName' ])) |
| 13 | 1278 self.assertTrue('store' in DoGet(_REMOTE, '/modalities/toto')) |
| 1279 self.assertTrue('store' in DoGet(_REMOTE, '/modalities/tata')) | |
| 1280 DoDelete(_REMOTE, '/modalities/toto') | |
| 1281 DoDelete(_REMOTE, '/modalities/tata') | |
| 1282 self.assertRaises(Exception, lambda: DoGet(_REMOTE, '/modalities/toto')) | |
| 1283 self.assertRaises(Exception, lambda: DoGet(_REMOTE, '/modalities/tata')) | |
| 1284 | |
| 1285 | |
| 1286 def test_update_peers(self): | |
| 1287 # curl -X PUT http://localhost:8042/peers/toto -d '["http://localhost:8042/"]' -v | |
| 1288 try: | |
| 1289 DoDelete(_REMOTE, '/peers/toto') | |
| 1290 except: | |
| 1291 pass | |
| 1292 try: | |
| 1293 DoDelete(_REMOTE, '/peers/tata') | |
| 1294 except: | |
| 1295 pass | |
| 1296 self.assertRaises(Exception, lambda: DoGet(_REMOTE, '/peers/toto')) | |
| 1297 DoPut(_REMOTE, '/peers/toto', [ 'http://localhost:8042/' ]) | |
| 1298 DoPut(_REMOTE, '/peers/tata', [ 'http://localhost:8042/', 'user', 'pass' ]) | |
| 128 | 1299 self.assertTrue('tata' in DoGet(_REMOTE, '/peers')) |
| 1300 peersReadback = DoGet(_REMOTE, '/peers?expand') | |
| 1301 self.assertEqual('http://localhost:8042/', peersReadback['tata']['Url']) | |
| 1302 self.assertEqual('user', peersReadback['tata']['Username']) | |
| 1303 self.assertFalse('Password' in peersReadback['tata']) # make sure no sensitive data is included | |
| 1304 self.assertFalse('CertificateFile' in peersReadback['tata']) # make sure no sensitive data is included | |
| 1305 self.assertFalse('CertificateKeyFile' in peersReadback['tata']) # make sure no sensitive data is included | |
| 1306 self.assertFalse('CertificateKeyPassword' in peersReadback['tata']) # make sure no sensitive data is included | |
| 1307 self.assertFalse('Pkcs11' in peersReadback['tata']) # make sure no sensitive data is included | |
| 13 | 1308 self.assertRaises(Exception, lambda: DoPut(_REMOTE, '/peers/toto', [ 'http://localhost:8042/', 'a' ])) |
| 1309 self.assertRaises(Exception, lambda: DoPut(_REMOTE, '/peers/toto', [ 'http://localhost:8042/', 'a', 'b', 'c' ])) | |
| 1310 self.assertTrue('store' in DoGet(_REMOTE, '/peers/toto')) | |
| 1311 self.assertTrue('store' in DoGet(_REMOTE, '/peers/tata')) | |
| 1312 DoDelete(_REMOTE, '/peers/toto') | |
| 1313 DoDelete(_REMOTE, '/peers/tata') | |
| 1314 self.assertRaises(Exception, lambda: DoGet(_REMOTE, '/peers/toto')) | |
| 1315 self.assertRaises(Exception, lambda: DoGet(_REMOTE, '/peers/tata')) | |
| 1316 | |
| 1317 | |
| 1318 def test_mesterhazy_modification(self): | |
| 1319 # When I modify a series ( eg. curl | |
| 1320 # http://localhost:8042/series/uidhere/modify -X POST -d | |
| 1321 # '{"Replace":{"SeriesDate":"19990101"}}' ) the modified | |
| 1322 # series is added to a new Study, instead of the existing | |
| 1323 # Study. Fixed in Orthanc 0.7.5 | |
| 1324 | |
| 1325 u = UploadInstance(_REMOTE, 'DummyCT.dcm') | |
| 1326 study = 'b9c08539-26f93bde-c81ab0d7-bffaf2cb-a4d0bdd0' | |
| 1327 series = 'f2635388-f01d497a-15f7c06b-ad7dba06-c4c599fe' | |
| 1328 | |
| 1329 modified = DoPost(_REMOTE, '/series/%s/modify' % series, | |
| 1330 json.dumps({ "Replace" : { "SeriesDate" : "19990101" }})) | |
| 1331 | |
| 1332 self.assertEqual(study, DoGet(_REMOTE, '/series/%s' % modified['ID']) ['ParentStudy']) | |
| 1333 | |
| 1334 | |
| 1335 def test_create(self): | |
| 1336 i = DoPost(_REMOTE, '/tools/create-dicom', | |
| 1337 json.dumps({ | |
| 1338 'PatientName' : 'Jodogne', | |
| 1339 'Modality' : 'CT', | |
| 58 | 1340 'SOPClassUID' : '1.2.840.10008.5.1.4.1.1.1', |
| 13 | 1341 'PixelData' : 'data:image/png;base64,iVBORw0KGgoAAAANSUhEUgAAAAUAAAAFCAYAAACNbyblAAAAHElEQVQI12P4//8/w38GIAXDIBKE0DHxgljNBAAO9TXL0Y4OHwAAAABJRU5ErkJggg==' # red dot in RGBA |
| 1342 })) | |
| 1343 | |
| 1344 self.assertEqual('Jodogne', DoGet(_REMOTE, '/instances/%s/content/PatientName' % i['ID']).strip()) | |
| 1345 self.assertEqual('CT', DoGet(_REMOTE, '/instances/%s/content/Modality' % i['ID']).strip()) | |
| 1346 | |
| 1347 png = GetImage(_REMOTE, '/instances/%s/preview' % i['ID']) | |
| 1348 self.assertEqual((5, 5), png.size) | |
| 1349 | |
| 38 | 1350 j = DoGet(_REMOTE, i['Path']) |
| 1351 self.assertEqual('Instance', j['Type']) | |
| 1352 self.assertEqual(j['ID'], i['ID']) | |
| 1353 | |
| 13 | 1354 |
| 1355 def test_pilates(self): | |
| 1356 # "SCU failed error when accessing orthanc with osirix" by | |
| 1357 # Pilates Agentur (Mar 10, 2014 at 9:33 PM) | |
| 1358 i = UploadInstance(_REMOTE, 'PilatesArgenturGEUltrasoundOsiriX.dcm')['ID'] | |
| 1359 self.assertEqual(0, len(DoGet(_LOCAL, '/patients'))) | |
| 1360 j = DoPost(_REMOTE, '/modalities/orthanctest/store', str(i), 'text/plain') | |
| 1361 self.assertEqual(1, len(DoGet(_LOCAL, '/patients'))) | |
| 1362 | |
| 1363 | |
| 1364 def test_shared_tags(self): | |
| 1365 a = UploadInstance(_REMOTE, 'Knee/T1/IM-0001-0001.dcm')['ID'] | |
| 1366 b = UploadInstance(_REMOTE, 'Knee/T1/IM-0001-0002.dcm')['ID'] | |
| 1367 p = DoGet(_REMOTE, '/patients')[0] | |
| 1368 | |
| 1369 self.assertTrue('0010,0010' in DoGet(_REMOTE, '/patients/%s/shared-tags' % p)) | |
| 1370 self.assertTrue('PatientName' in DoGet(_REMOTE, '/patients/%s/shared-tags?simplify' % p)) | |
|
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1371 self.assertTrue('0010,0010' in DoGet(_REMOTE, '/patients/%s/shared-tags?short' % p)) |
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1372 |
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1373 self.assertEqual('KNEE', DoGet(_REMOTE, '/patients/%s/shared-tags' % p)['0010,0010']['Value']) |
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1374 self.assertEqual('KNEE', DoGet(_REMOTE, '/patients/%s/shared-tags?simplify' % p)['PatientName']) |
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1375 self.assertEqual('KNEE', DoGet(_REMOTE, '/patients/%s/shared-tags?short' % p)['0010,0010']) |
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1376 |
| 13 | 1377 self.assertTrue('0008,1030' in DoGet(_REMOTE, '/patients/%s/shared-tags' % p)) |
| 1378 self.assertTrue('StudyDescription' in DoGet(_REMOTE, '/patients/%s/shared-tags?simplify' % p)) | |
| 1379 self.assertTrue('0008,103e' in DoGet(_REMOTE, '/patients/%s/shared-tags' % p)) | |
| 1380 self.assertTrue('SeriesDescription' in DoGet(_REMOTE, '/patients/%s/shared-tags?simplify' % p)) | |
| 1381 self.assertFalse('0008,0018' in DoGet(_REMOTE, '/patients/%s/shared-tags' % p)) | |
| 1382 self.assertFalse('SOPInstanceUID' in DoGet(_REMOTE, '/patients/%s/shared-tags?simplify' % p)) | |
| 1383 | |
| 1384 self.assertTrue('0008,0018' in DoGet(_REMOTE, '/instances/%s/tags' % a)) | |
| 1385 self.assertTrue('SOPInstanceUID' in DoGet(_REMOTE, '/instances/%s/tags?simplify' % a)) | |
| 1386 | |
| 1387 | |
| 1388 def test_modules(self): | |
| 1389 a = UploadInstance(_REMOTE, 'Knee/T1/IM-0001-0001.dcm')['ID'] | |
| 1390 p = DoGet(_REMOTE, '/patients')[0] | |
| 1391 s = DoGet(_REMOTE, '/studies')[0] | |
| 1392 t = DoGet(_REMOTE, '/series')[0] | |
| 1393 | |
| 1394 self.assertTrue('0010,0010' in DoGet(_REMOTE, '/patients/%s/module' % p)) | |
| 1395 self.assertTrue('PatientName' in DoGet(_REMOTE, '/patients/%s/module?simplify' % p)) | |
| 1396 self.assertTrue('0010,0010' in DoGet(_REMOTE, '/studies/%s/module-patient' % p)) | |
| 1397 self.assertTrue('PatientName' in DoGet(_REMOTE, '/studies/%s/module-patient?simplify' % p)) | |
| 1398 self.assertTrue('0008,1030' in DoGet(_REMOTE, '/studies/%s/module' % s)) | |
| 1399 self.assertTrue('StudyDescription' in DoGet(_REMOTE, '/studies/%s/module?simplify' % s)) | |
| 1400 self.assertTrue('0008,103e' in DoGet(_REMOTE, '/series/%s/module' % p)) | |
| 1401 self.assertTrue('SeriesDescription' in DoGet(_REMOTE, '/series/%s/module?simplify' % p)) | |
| 1402 self.assertTrue('0008,0018' in DoGet(_REMOTE, '/instances/%s/module' % a)) | |
| 1403 self.assertTrue('SOPInstanceUID' in DoGet(_REMOTE, '/instances/%s/module?simplify' % a)) | |
| 1404 | |
| 1405 | |
| 1406 def test_auto_directory(self): | |
| 1407 a = UploadInstance(_REMOTE, 'Knee/T1/IM-0001-0001.dcm')['ID'] | |
| 1408 self.assertTrue('now' in DoGet(_REMOTE, '/tools')) | |
| 1409 self.assertTrue('dicom-conformance' in DoGet(_REMOTE, '/tools')) | |
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1410 self.assertTrue('invalidate-tags' in DoGet(_REMOTE, '/tools')) |
| 13 | 1411 self.assertTrue(len(DoGet(_REMOTE, '/tools/dicom-conformance')) > 1000) |
| 1412 self.assertTrue('orthanctest' in DoGet(_REMOTE, '/modalities')) | |
| 1413 self.assertTrue('echo' in DoGet(_REMOTE, '/modalities/orthanctest')) | |
| 1414 self.assertTrue('find' in DoGet(_REMOTE, '/modalities/orthanctest')) | |
| 1415 self.assertTrue('find-instance' in DoGet(_REMOTE, '/modalities/orthanctest')) | |
| 1416 self.assertTrue('find-patient' in DoGet(_REMOTE, '/modalities/orthanctest')) | |
| 1417 self.assertTrue('find-series' in DoGet(_REMOTE, '/modalities/orthanctest')) | |
| 1418 self.assertTrue('find-study' in DoGet(_REMOTE, '/modalities/orthanctest')) | |
| 1419 self.assertTrue('store' in DoGet(_REMOTE, '/modalities/orthanctest')) | |
| 1420 self.assertTrue('store' in DoGet(_REMOTE, '/peers/peer')) | |
| 1421 self.assertTrue('matlab' in DoGet(_REMOTE, '/instances/%s/frames/0' % a)) | |
| 79 | 1422 self.assertTrue('raw' in DoGet(_REMOTE, '/instances/%s/frames/0' % a)) |
| 13 | 1423 self.assertRaises(Exception, lambda: DoGet(_REMOTE, '/tools/nope')) |
| 28 | 1424 self.assertRaises(Exception, lambda: DoGet(_REMOTE, '/nope')) |
| 1425 self.assertRaises(Exception, lambda: DoGet(_REMOTE, '/nope/nope.html')) | |
| 1426 self.assertEqual(404, DoGetRaw(_REMOTE, '/nope')[0].status) | |
| 1427 self.assertEqual(404, DoGetRaw(_REMOTE, '/nope/nope.html')[0].status) | |
| 13 | 1428 |
| 1429 | |
| 1430 def test_echo(self): | |
| 1431 DoPost(_REMOTE, '/modalities/orthanctest/echo') | |
| 1432 | |
| 1433 | |
| 1434 def test_xml(self): | |
| 1435 json = DoGet(_REMOTE, '/tools', headers = { 'accept' : 'application/json' }) | |
| 1436 xml = minidom.parseString(DoGet(_REMOTE, '/tools', headers = { 'accept' : 'application/xml' })) | |
| 1437 items = xml.getElementsByTagName('root')[0].getElementsByTagName('item') | |
| 1438 self.assertEqual(len(items), len(json)) | |
| 1439 | |
| 1440 self.assertTrue('dicom-conformance' in json) | |
| 1441 | |
| 1442 ok = False | |
| 1443 for i in items: | |
| 1444 if i.childNodes[0].data == 'dicom-conformance': | |
| 1445 ok = True | |
| 1446 self.assertTrue(ok) | |
| 1447 | |
| 1448 | |
|
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1449 def test_googlecode_issue_16(self): |
| 13 | 1450 i = UploadInstance(_REMOTE, 'Issue16.dcm')['ID'] |
| 1451 t = DoGet(_REMOTE, '/instances/%s/tags?simplify' % i)['FrameIncrementPointer'] | |
| 1452 self.assertEqual('0018,1063', t) | |
| 1453 | |
| 1454 | |
|
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1455 def test_googlecode_issue_22(self): |
| 13 | 1456 s = UploadInstance(_REMOTE, 'Issue22.dcm')['ID'] |
| 1457 a = [ | |
| 1458 "f804691f62197040438f4627c6b994f1", # Frame 0 | |
| 1459 "c69eee9a51eea3e8611e82e578897254", | |
| 1460 "315666be83e2d0111c77bc0996d84901", | |
| 1461 "3e27aa959d911172c48a1436443c72b1", | |
| 1462 "958642c9e7e9d232d3869faff546058c", | |
| 1463 "5e7ea8e3e4230cae707d143481355c59", | |
| 1464 "eda37f83558d858a596175aed8b2ad47", | |
| 1465 "486713bd2895c4ecbe0e97715ac7f80a", | |
| 1466 "091ef729eb169e67da8a0faa9631f9a8", | |
| 1467 "5aa2b8c7ffe0a483efaa8e12417686ca", | |
| 1468 "e2f39e85896fe58876654b94cd0b5013", | |
| 1469 "6fd2129e4950abbe1be053bc814d5da8", | |
| 1470 "c3331a8ba7a757f3d423735ab7fa81f9", | |
| 1471 "746f808582156734dd6b6fdfd3a0b72c", | |
| 1472 "8075ea2b227a70c60ea6b7b75a6bb190", | |
| 1473 "806b8b3e300c615099c11a5ec23465aa", | |
| 1474 "7c836aa298ba6eef96434579af631a11", | |
| 1475 "a0357dc9f4f72d73a885c33d7c287446", | |
| 1476 "f25ba3be1cc7d7fad95706adc199ea7d", | |
| 1477 "8b114c526b8cbed6cad8a3248b7b480c", | |
| 1478 "44e6670f127e612a2b4aa60a0d207698", | |
| 1479 "b8945f90fe02facf2ace24ca1ecbe0a5", | |
| 1480 "95c796c2fa8f59018b15cf2987b1f79b", | |
| 1481 "ce0a51ab30224205b44920221dc27351", # Frame 23 | |
| 1482 ] | |
| 1483 | |
| 1484 self.assertEqual(24, len(DoGet(_REMOTE, '/instances/%s/frames' % s))) | |
| 1485 self.assertRaises(Exception, lambda: DoGet(_REMOTE, '/instances/%s/frames/24/preview' % s)) | |
| 1486 | |
| 1487 for i in range(len(a)): | |
| 1488 self.assertEqual(a[i], ComputeMD5(DoGet(_REMOTE, '/instances/%s/frames/%d/preview' % (s, i)))) | |
| 1489 | |
| 1490 | |
|
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1491 def test_googlecode_issue_19(self): |
|
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1492 # This is an image with "YBR_FULL" photometric interpretation, it is not supported by Orthanc |
| 13 | 1493 # gdcmconv -i /home/jodogne/DICOM/GdcmDatabase/US_DataSet/HDI5000_US/3EAF5E01 -w -o Issue19.dcm |
| 1494 | |
| 1495 a = UploadInstance(_REMOTE, 'Issue19.dcm')['ID'] | |
|
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|
1496 self.assertRaises(Exception, lambda: DoGet(_REMOTE, '/instances/941ad3c8-05d05b88-560459f9-0eae0e20-6cddd533/preview')) |
| 13 | 1497 |
| 1498 | |
|
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1499 def test_googlecode_issue_37(self): |
| 13 | 1500 # Same test for issues 35 and 37. Fixed in Orthanc 0.9.1 |
| 1501 u = UploadInstance(_REMOTE, 'Beaufix/IM-0001-0001.dcm')['ID'] | |
| 1502 | |
| 1503 a = DoPost(_REMOTE, '/tools/find', { 'Level' : 'Series', | |
| 1504 'CaseSensitive' : True, | |
| 1505 'Query' : { 'StationName' : 'SMR4-MP3' }}) | |
| 1506 self.assertEqual(1, len(a)) | |
| 14 | 1507 |
| 1508 | |
| 1509 def test_rest_find(self): | |
| 1510 # Upload 8 instances | |
| 1511 for i in range(2): | |
| 1512 UploadInstance(_REMOTE, 'Brainix/Flair/IM-0001-000%d.dcm' % (i + 1)) | |
| 1513 UploadInstance(_REMOTE, 'Brainix/Epi/IM-0001-000%d.dcm' % (i + 1)) | |
| 1514 UploadInstance(_REMOTE, 'Knee/T1/IM-0001-000%d.dcm' % (i + 1)) | |
| 1515 UploadInstance(_REMOTE, 'Knee/T2/IM-0001-000%d.dcm' % (i + 1)) | |
| 1516 | |
| 1517 a = DoPost(_REMOTE, '/tools/find', { 'Level' : 'Patient', | |
| 1518 'CaseSensitive' : False, | |
| 1519 'Query' : { 'PatientName' : '*n*' }}) | |
| 1520 self.assertEqual(2, len(a)) | |
| 1521 | |
| 1522 a = DoPost(_REMOTE, '/tools/find', { 'Level' : 'Patient', | |
| 1523 'CaseSensitive' : True, | |
| 1524 'Query' : { 'PatientName' : '*n*' }}) | |
| 1525 self.assertEqual(0, len(a)) | |
| 1526 | |
| 1527 a = DoPost(_REMOTE, '/tools/find', { 'Expand' : True, | |
| 1528 'Level' : 'Patient', | |
| 1529 'CaseSensitive' : False, | |
| 1530 'Query' : { 'PatientName' : '*ne*' }}) | |
| 1531 self.assertEqual(1, len(a)) | |
| 1532 self.assertEqual('20080822', a[0]['MainDicomTags']['PatientBirthDate']) | |
| 1533 | |
| 1534 a = DoPost(_REMOTE, '/tools/find', { 'Level' : 'Patient', | |
| 1535 'CaseSensitive' : True, | |
| 1536 'Query' : { 'PatientName' : '*ne*' }}) | |
| 1537 self.assertEqual(0, len(a)) | |
| 1538 | |
| 1539 a = DoPost(_REMOTE, '/tools/find', { 'Level' : 'Study', | |
| 1540 'CaseSensitive' : True, | |
| 1541 'Query' : { 'PatientName' : '*NE*' }}) | |
| 1542 self.assertEqual(1, len(a)) | |
| 1543 | |
| 1544 a = DoPost(_REMOTE, '/tools/find', { 'Level' : 'Series', | |
| 1545 'CaseSensitive' : True, | |
| 1546 'Query' : { 'PatientName' : '*NE*' }}) | |
| 1547 self.assertEqual(2, len(a)) | |
| 1548 | |
| 1549 a = DoPost(_REMOTE, '/tools/find', { 'Level' : 'Instance', | |
| 1550 'CaseSensitive' : True, | |
| 1551 'Query' : { 'PatientName' : '*NE*' }}) | |
| 1552 self.assertEqual(4, len(a)) | |
| 1553 | |
| 1554 a = DoPost(_REMOTE, '/tools/find', { 'Level' : 'Patient', 'Query' : { }}) | |
| 1555 self.assertEqual(2, len(a)) | |
| 1556 | |
| 1557 a = DoPost(_REMOTE, '/tools/find', { 'Level' : 'Study', 'Query' : { }}) | |
| 1558 self.assertEqual(2, len(a)) | |
| 1559 | |
| 1560 a = DoPost(_REMOTE, '/tools/find', { 'Level' : 'Series', 'Query' : { }}) | |
| 1561 self.assertEqual(4, len(a)) | |
| 1562 | |
| 1563 a = DoPost(_REMOTE, '/tools/find', { 'Level' : 'Instance', 'Query' : { }}) | |
| 1564 self.assertEqual(8, len(a)) | |
| 1565 | |
| 1566 | |
| 1567 def test_rest_query_retrieve(self): | |
| 1568 self.assertEqual(0, len(DoGet(_REMOTE, '/patients'))) | |
| 1569 | |
| 1570 # Upload 8 instances | |
| 1571 for i in range(2): | |
| 1572 UploadInstance(_REMOTE, 'Brainix/Flair/IM-0001-000%d.dcm' % (i + 1)) | |
| 1573 UploadInstance(_REMOTE, 'Brainix/Epi/IM-0001-000%d.dcm' % (i + 1)) | |
| 1574 UploadInstance(_REMOTE, 'Knee/T1/IM-0001-000%d.dcm' % (i + 1)) | |
| 1575 UploadInstance(_REMOTE, 'Knee/T2/IM-0001-000%d.dcm' % (i + 1)) | |
| 1576 | |
| 1577 self.assertEqual(2, len(DoGet(_REMOTE, '/patients'))) | |
| 1578 for p in DoGet(_REMOTE, '/patients'): | |
| 1579 DoPost(_REMOTE, '/modalities/orthanctest/store', p) | |
| 1580 DoDelete(_REMOTE, '/patients/%s' % p) | |
| 1581 | |
| 1582 for q in DoGet(_REMOTE, '/queries'): | |
| 1583 DoDelete(_REMOTE, '/queries/%s' % q) | |
| 1584 | |
| 1585 self.assertEqual(0, len(DoGet(_REMOTE, '/patients'))) | |
| 1586 self.assertEqual(0, len(DoGet(_REMOTE, '/queries'))) | |
| 1587 a = DoPost(_REMOTE, '/modalities/orthanctest/query', { 'Level' : 'Series', | |
| 27 | 1588 'Query' : { |
| 1589 'PatientName' : '*NE*', | |
| 1590 'StudyDate' : '*', | |
| 1591 }})['ID'] | |
| 14 | 1592 self.assertEqual(1, len(DoGet(_REMOTE, '/queries'))) |
| 1593 | |
| 1594 b = DoGet(_REMOTE, '/queries/%s' % a) | |
| 1595 self.assertTrue('answers' in b) | |
| 1596 self.assertTrue('level' in b) | |
| 1597 self.assertTrue('modality' in b) | |
| 1598 self.assertTrue('query' in b) | |
| 1599 self.assertTrue('retrieve' in b) | |
| 1600 self.assertEqual('Series', DoGet(_REMOTE, '/queries/%s/level' % a)) | |
| 1601 self.assertEqual('orthanctest', DoGet(_REMOTE, '/queries/%s/modality' % a)) | |
| 1602 | |
| 1603 q = DoGet(_REMOTE, '/queries/%s/query?simplify' % a) | |
| 27 | 1604 self.assertEqual(2, len(q)) |
| 14 | 1605 self.assertTrue('PatientName' in q) |
| 27 | 1606 self.assertTrue('StudyDate' in q) |
| 14 | 1607 self.assertEqual('*NE*', q['PatientName']) |
| 27 | 1608 self.assertEqual('*', q['StudyDate']) |
| 14 | 1609 |
| 1610 self.assertEqual(2, len(DoGet(_REMOTE, '/queries/%s/answers' % a))) | |
| 1611 | |
| 1612 s = DoGet(_REMOTE, '/queries/%s/answers/0' % a) | |
| 1613 self.assertTrue('content' in s) | |
| 1614 self.assertTrue('retrieve' in s) | |
| 1615 | |
| 1616 s = DoGet(_REMOTE, '/queries/%s/answers/0/content?simplify' % a) | |
| 1617 self.assertEqual('887', s['PatientID']) | |
| 1618 self.assertEqual('2.16.840.1.113669.632.20.121711.10000160881', s['StudyInstanceUID']) | |
| 1619 | |
| 1620 self.assertEqual(0, len(DoGet(_REMOTE, '/patients'))) | |
| 1621 DoPost(_REMOTE, '/queries/%s/answers/0/retrieve' % a, 'ORTHANC') | |
| 1622 self.assertEqual(1, len(DoGet(_REMOTE, '/patients'))) | |
| 1623 self.assertEqual(1, len(DoGet(_REMOTE, '/studies'))) | |
| 1624 self.assertEqual(1, len(DoGet(_REMOTE, '/series'))) | |
| 1625 self.assertEqual(2, len(DoGet(_REMOTE, '/instances'))) | |
| 1626 | |
| 112 | 1627 DoPost(_REMOTE, '/queries/%s/answers/1/retrieve' % a, 'ORTHANC', 'application/json') # make sure the issue #36 is fixed (query/retrieve Rest API: /retrieve route shall accept application/json content type) |
| 14 | 1628 self.assertEqual(1, len(DoGet(_REMOTE, '/patients'))) |
| 1629 self.assertEqual(1, len(DoGet(_REMOTE, '/studies'))) | |
| 1630 self.assertEqual(2, len(DoGet(_REMOTE, '/series'))) | |
| 1631 self.assertEqual(4, len(DoGet(_REMOTE, '/instances'))) | |
| 1632 | |
| 1633 DoDelete(_REMOTE, '/queries/%s' % a) | |
| 1634 self.assertEqual(0, len(DoGet(_REMOTE, '/queries'))) | |
| 1635 | |
| 1636 | |
| 1637 def test_parent(self): | |
| 1638 u = UploadInstance(_REMOTE, 'DummyCT.dcm')['ID'] | |
| 1639 patient = '6816cb19-844d5aee-85245eba-28e841e6-2414fae2' | |
| 1640 study = 'b9c08539-26f93bde-c81ab0d7-bffaf2cb-a4d0bdd0' | |
| 1641 series = 'f2635388-f01d497a-15f7c06b-ad7dba06-c4c599fe' | |
| 1642 instance = '66a662ce-7430e543-bad44d47-0dc5a943-ec7a538d' | |
|
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104
diff
changeset
|
1643 self.assertEqual(instance, u) |
| 14 | 1644 |
| 1645 a = DoGet(_REMOTE, '/studies/%s/patient' % study) | |
| 1646 self.assertEqual('Patient', a['Type']) | |
| 1647 self.assertEqual(patient, a['ID']) | |
| 1648 | |
| 1649 a = DoGet(_REMOTE, '/series/%s/patient' % series) | |
| 1650 self.assertEqual('Patient', a['Type']) | |
| 1651 self.assertEqual(patient, a['ID']) | |
| 1652 | |
| 1653 a = DoGet(_REMOTE, '/series/%s/study' % series) | |
| 1654 self.assertEqual('Study', a['Type']) | |
| 1655 self.assertEqual(study, a['ID']) | |
| 1656 | |
| 1657 a = DoGet(_REMOTE, '/instances/%s/patient' % instance) | |
| 1658 self.assertEqual('Patient', a['Type']) | |
| 1659 self.assertEqual(patient, a['ID']) | |
| 1660 | |
| 1661 a = DoGet(_REMOTE, '/instances/%s/study' % instance) | |
| 1662 self.assertEqual('Study', a['Type']) | |
| 1663 self.assertEqual(study, a['ID']) | |
| 1664 | |
| 1665 a = DoGet(_REMOTE, '/instances/%s/series' % instance) | |
| 1666 self.assertEqual('Series', a['Type']) | |
| 1667 self.assertEqual(series, a['ID']) | |
| 1668 | |
| 1669 | |
| 1670 def test_shanon(self): | |
| 1671 def Anonymize(instance, replacements = {}): | |
| 119 | 1672 return DoPost(_REMOTE, '/instances/%s/anonymize' % instance, { |
| 1673 'Replace' : replacements, | |
| 1674 'Force' : True, | |
| 1675 }, 'application/json') | |
| 14 | 1676 |
| 1677 self.assertEqual(0, len(DoGet(_REMOTE, '/instances'))) | |
| 1678 u = UploadInstance(_REMOTE, 'DummyCT.dcm')['ID'] | |
| 1679 self.assertEqual(1, len(DoGet(_REMOTE, '/instances'))) | |
| 1680 | |
| 1681 tags = [ 'PatientID', 'StudyInstanceUID', 'SeriesInstanceUID', 'SOPInstanceUID', 'DeidentificationMethod' ] | |
| 1682 ids = [ 'ozp00SjY2xG', | |
| 1683 '1.2.840.113619.2.176.2025.1499492.7391.1171285944.390', | |
| 1684 '1.2.840.113619.2.176.2025.1499492.7391.1171285944.394', | |
| 1685 '1.2.840.113619.2.176.2025.1499492.7040.1171286242.109' ] | |
| 1686 | |
| 1687 a = ExtractDicomTags(Anonymize(u), tags) | |
| 1688 for i in range(4): | |
| 1689 self.assertNotEqual(ids[i], a[i]) | |
| 1690 self.assertTrue(a[4].startswith('Orthanc')) | |
| 1691 | |
| 1692 a = ExtractDicomTags(Anonymize(u, { 'PatientName' : 'toto' }), tags) | |
| 1693 for i in range(4): | |
| 1694 self.assertNotEqual(ids[i], a[i]) | |
| 1695 self.assertFalse(a[4].startswith('Orthanc')) | |
| 1696 | |
| 1697 a = ExtractDicomTags(Anonymize(u, { 'SOPInstanceUID' : 'instance' }), tags) | |
| 1698 self.assertEqual('instance', a[3]) | |
| 1699 self.assertFalse(a[4].startswith('Orthanc')) | |
| 1700 | |
| 1701 a = ExtractDicomTags(Anonymize(u, { 'SeriesInstanceUID' : 'series' }), tags) | |
| 1702 self.assertEqual('series', a[2]) | |
| 1703 self.assertFalse(a[4].startswith('Orthanc')) | |
| 1704 | |
| 1705 a = ExtractDicomTags(Anonymize(u, { 'StudyInstanceUID' : 'study' }), tags) | |
| 1706 self.assertEqual('study', a[1]) | |
| 1707 self.assertFalse(a[4].startswith('Orthanc')) | |
| 1708 | |
| 1709 a = ExtractDicomTags(Anonymize(u, { 'PatientID' : 'patient' }), tags) | |
| 1710 self.assertEqual('patient', a[0]) | |
| 1711 self.assertFalse(a[4].startswith('Orthanc')) | |
| 1712 | |
| 1713 a = ExtractDicomTags(Anonymize(u, { 'PatientID' : 'patient', | |
| 1714 'StudyInstanceUID' : 'study', | |
| 1715 'SeriesInstanceUID' : 'series', | |
| 1716 'SOPInstanceUID' : 'instance' }), tags) | |
| 1717 self.assertEqual('patient', a[0]) | |
| 1718 self.assertFalse(a[4].startswith('Orthanc')) | |
| 1719 | |
| 1720 self.assertEqual(1, len(DoGet(_REMOTE, '/instances'))) | |
| 1721 | |
| 1722 | |
| 1723 def test_shanon_2(self): | |
| 1724 def Modify(instance, replacements = {}): | |
| 119 | 1725 return DoPost(_REMOTE, '/instances/%s/modify' % instance, { |
| 1726 'Replace' : replacements, | |
| 1727 'Force': True, | |
| 1728 }, 'application/json') | |
| 14 | 1729 |
| 1730 self.assertEqual(0, len(DoGet(_REMOTE, '/instances'))) | |
| 1731 u = UploadInstance(_REMOTE, 'DummyCT.dcm')['ID'] | |
| 1732 self.assertEqual(1, len(DoGet(_REMOTE, '/instances'))) | |
| 1733 | |
| 1734 tags = [ 'PatientID', 'StudyInstanceUID', 'SeriesInstanceUID', 'SOPInstanceUID', 'DeidentificationMethod' ] | |
| 1735 ids = [ 'ozp00SjY2xG', | |
| 1736 '1.2.840.113619.2.176.2025.1499492.7391.1171285944.390', | |
| 1737 '1.2.840.113619.2.176.2025.1499492.7391.1171285944.394', | |
| 1738 '1.2.840.113619.2.176.2025.1499492.7040.1171286242.109' ] | |
| 1739 | |
| 1740 a = ExtractDicomTags(Modify(u), tags) | |
| 1741 self.assertEqual(ids[0], a[0]) | |
| 1742 self.assertEqual(ids[1], a[1]) | |
| 1743 self.assertEqual(ids[2], a[2]) | |
| 1744 self.assertNotEqual(ids[3], a[3]) | |
| 1745 self.assertEqual(0, len(a[4])) | |
| 1746 | |
| 1747 a = ExtractDicomTags(Modify(u, { 'SOPInstanceUID' : 'instance' }), tags) | |
| 1748 self.assertEqual(ids[0], a[0]) | |
| 1749 self.assertEqual(ids[1], a[1]) | |
| 1750 self.assertEqual(ids[2], a[2]) | |
| 1751 self.assertEqual('instance', a[3]) | |
| 1752 | |
| 1753 a = ExtractDicomTags(Modify(u, { 'SeriesInstanceUID' : 'series' }), tags) | |
| 1754 self.assertEqual(ids[0], a[0]) | |
| 1755 self.assertEqual(ids[1], a[1]) | |
| 1756 self.assertEqual('series', a[2]) | |
| 1757 self.assertNotEqual(ids[3], a[3]) | |
| 1758 | |
| 1759 a = ExtractDicomTags(Modify(u, { 'StudyInstanceUID' : 'study' }), tags) | |
| 1760 self.assertEqual(ids[0], a[0]) | |
| 1761 self.assertEqual('study', a[1]) | |
| 1762 self.assertNotEqual(ids[2], a[2]) | |
| 1763 self.assertNotEqual(ids[3], a[3]) | |
| 1764 | |
| 1765 a = ExtractDicomTags(Modify(u, { 'PatientID' : 'patient' }), tags) | |
| 1766 self.assertEqual('patient', a[0]) | |
| 1767 self.assertNotEqual(ids[1], a[1]) | |
| 1768 self.assertNotEqual(ids[2], a[2]) | |
| 1769 self.assertNotEqual(ids[3], a[3]) | |
| 1770 | |
| 1771 a = ExtractDicomTags(Modify(u, { 'PatientID' : 'patient', | |
| 1772 'StudyInstanceUID' : 'study', | |
| 1773 'SeriesInstanceUID' : 'series', | |
| 1774 'SOPInstanceUID' : 'instance' }), tags) | |
| 1775 self.assertEqual('patient', a[0]) | |
| 1776 self.assertEqual('study', a[1]) | |
| 1777 self.assertEqual('series', a[2]) | |
| 1778 self.assertEqual('instance', a[3]) | |
| 1779 | |
| 1780 self.assertEqual(1, len(DoGet(_REMOTE, '/instances'))) | |
| 1781 | |
| 1782 | |
| 1783 def test_instances_tags(self): | |
| 1784 a = UploadInstance(_REMOTE, 'Knee/T1/IM-0001-0001.dcm')['ID'] | |
| 1785 b = UploadInstance(_REMOTE, 'Knee/T2/IM-0001-0001.dcm')['ID'] | |
| 1786 #a = UploadInstance(_REMOTE, 'Cardiac/MR.X.1.2.276.0.7230010.3.1.4.2831157719.2256.1336386937.676343')['ID'] | |
| 1787 #b = UploadInstance(_REMOTE, 'Cardiac/MR.X.1.2.276.0.7230010.3.1.4.2831157719.2256.1336386925.676329')['ID'] | |
| 1788 | |
| 1789 i = DoGet(_REMOTE, '/patients/%s/instances-tags?simplify' % DoGet(_REMOTE, '/patients')[0]) | |
| 1790 self.assertEqual(2, len(i)) | |
| 1791 self.assertEqual('887', i[i.keys()[0]]['PatientID']) | |
| 1792 self.assertEqual('887', i[i.keys()[1]]['PatientID']) | |
| 1793 | |
| 1794 i = DoGet(_REMOTE, '/patients/%s/instances-tags?simplify' % DoGet(_REMOTE, '/studies')[0]) | |
| 1795 self.assertEqual(2, len(i)) | |
| 1796 self.assertEqual('887', i[i.keys()[0]]['PatientID']) | |
| 1797 self.assertEqual('887', i[i.keys()[1]]['PatientID']) | |
| 1798 | |
| 1799 self.assertEqual(2, len(DoGet(_REMOTE, '/series'))) | |
| 1800 i = DoGet(_REMOTE, '/patients/%s/instances-tags?simplify' % DoGet(_REMOTE, '/series')[0]) | |
| 1801 self.assertEqual(1, len(i)) | |
| 1802 self.assertEqual('887', i[i.keys()[0]]['PatientID']) | |
| 1803 | |
| 1804 i = DoGet(_REMOTE, '/patients/%s/instances-tags?simplify' % DoGet(_REMOTE, '/series')[1]) | |
| 1805 self.assertEqual(1, len(i)) | |
| 1806 self.assertEqual('887', i[i.keys()[0]]['PatientID']) | |
| 1807 | |
|
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diff
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|
1808 i = DoGet(_REMOTE, '/patients/%s/instances-tags?short' % DoGet(_REMOTE, '/series')[1]) |
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diff
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|
1809 self.assertEqual(1, len(i)) |
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|
1810 self.assertEqual('887', i[i.keys()[0]]['0010,0020']) |
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|
1811 |
| 14 | 1812 |
| 1813 def test_lookup(self): | |
| 1814 a = DoPost(_REMOTE, '/tools/lookup', 'ozp00SjY2xG') | |
| 1815 self.assertEqual(0, len(a)) | |
| 1816 | |
| 1817 UploadInstance(_REMOTE, 'DummyCT.dcm') | |
| 1818 | |
| 1819 a = DoPost(_REMOTE, '/tools/lookup', 'ozp00SjY2xG') | |
| 1820 self.assertEqual(1, len(a)) | |
| 1821 self.assertEqual('Patient', a[0]['Type']) | |
| 1822 self.assertEqual('6816cb19-844d5aee-85245eba-28e841e6-2414fae2', a[0]['ID']) | |
| 1823 self.assertEqual('/patients/%s' % a[0]['ID'], a[0]['Path']) | |
| 1824 | |
| 1825 a = DoPost(_REMOTE, '/tools/lookup', '1.2.840.113619.2.176.2025.1499492.7391.1171285944.390') | |
| 1826 self.assertEqual(1, len(a)) | |
| 1827 self.assertEqual('Study', a[0]['Type']) | |
| 1828 self.assertEqual('b9c08539-26f93bde-c81ab0d7-bffaf2cb-a4d0bdd0', a[0]['ID']) | |
| 1829 self.assertEqual('/studies/%s' % a[0]['ID'], a[0]['Path']) | |
| 1830 | |
| 1831 a = DoPost(_REMOTE, '/tools/lookup', '1.2.840.113619.2.176.2025.1499492.7391.1171285944.394') | |
| 1832 self.assertEqual(1, len(a)) | |
| 1833 self.assertEqual('Series', a[0]['Type']) | |
| 1834 self.assertEqual('f2635388-f01d497a-15f7c06b-ad7dba06-c4c599fe', a[0]['ID']) | |
| 1835 self.assertEqual('/series/%s' % a[0]['ID'], a[0]['Path']) | |
| 1836 | |
| 1837 a = DoPost(_REMOTE, '/tools/lookup', '1.2.840.113619.2.176.2025.1499492.7040.1171286242.109') | |
| 1838 self.assertEqual(1, len(a)) | |
| 1839 self.assertEqual('Instance', a[0]['Type']) | |
| 1840 self.assertEqual('66a662ce-7430e543-bad44d47-0dc5a943-ec7a538d', a[0]['ID']) | |
| 1841 self.assertEqual('/instances/%s' % a[0]['ID'], a[0]['Path']) | |
| 1842 | |
| 1843 DropOrthanc(_REMOTE) | |
| 1844 a = DoPost(_REMOTE, '/tools/lookup', '3113719P') | |
| 1845 self.assertEqual(0, len(a)) | |
| 1846 | |
| 15 | 1847 |
| 1848 def test_autorouting(self): | |
| 1849 knee1 = 'Knee/T1/IM-0001-0001.dcm' | |
| 1850 knee2 = 'Knee/T2/IM-0001-0002.dcm' | |
| 1851 other = 'Brainix/Flair/IM-0001-0001.dcm' | |
| 1852 | |
| 1853 # Check that this version is >= 0.8.0 | |
| 1854 self.assertTrue(IsDefinedInLua(_REMOTE, '_InitializeJob')) | |
| 1855 self.assertTrue('orthanctest' in DoGet(_REMOTE, '/modalities')) | |
| 1856 | |
| 1857 UploadInstance(_REMOTE, knee1) | |
| 1858 self.assertEqual(0, len(DoGet(_LOCAL, '/instances'))) | |
| 1859 | |
| 1860 DropOrthanc(_REMOTE) | |
| 1861 DropOrthanc(_LOCAL) | |
| 1862 InstallLuaScript('Lua/Autorouting.lua') | |
| 1863 UploadInstance(_REMOTE, knee1) | |
| 1864 UploadInstance(_REMOTE, knee2) | |
| 1865 UploadInstance(_REMOTE, other) | |
| 1866 WaitEmpty(_REMOTE) | |
| 1867 UninstallLuaCallbacks() | |
| 1868 self.assertEqual(3, len(DoGet(_LOCAL, '/instances'))) | |
| 1869 | |
| 1870 DropOrthanc(_REMOTE) | |
| 1871 DropOrthanc(_LOCAL) | |
| 1872 InstallLuaScript('Lua/AutoroutingConditional.lua') | |
| 1873 UploadInstance(_REMOTE, knee1) | |
| 1874 UploadInstance(_REMOTE, knee2) | |
| 1875 UploadInstance(_REMOTE, other) | |
| 1876 WaitEmpty(_REMOTE) | |
| 1877 UninstallLuaCallbacks() | |
| 1878 self.assertEqual(2, len(DoGet(_LOCAL, '/instances'))) | |
| 1879 | |
| 1880 DropOrthanc(_REMOTE) | |
| 1881 DropOrthanc(_LOCAL) | |
| 1882 InstallLuaScript('Lua/AutoroutingModification.lua') | |
| 1883 UploadInstance(_REMOTE, knee1) | |
| 1884 WaitEmpty(_REMOTE) | |
| 1885 UninstallLuaCallbacks() | |
| 1886 i = DoGet(_LOCAL, '/instances') | |
| 1887 self.assertEqual(1, len(i)) | |
| 1888 | |
| 1889 with tempfile.NamedTemporaryFile(delete = True) as f: | |
| 1890 f.write(DoGet(_LOCAL, '/instances/%s/file' % i[0])) | |
| 1891 f.flush() | |
| 45 | 1892 routed = subprocess.check_output([ FindExecutable('dcm2xml'), f.name ]) |
| 15 | 1893 self.assertEqual('My Medical Device', re.search('"StationName">(.*?)<', routed).group(1).strip()) |
| 1894 self.assertEqual(None, re.search('"MilitaryRank"', routed)) | |
| 1895 self.assertEqual(None, re.search('"0051,0010"', routed)) # A private tag | |
| 17 | 1896 |
| 1897 | |
| 1898 def test_storescu_rf(self): | |
| 1899 i = UploadInstance(_REMOTE, 'KarstenHilbertRF.dcm')['ID'] | |
| 1900 self.assertEqual(0, len(DoGet(_LOCAL, '/instances'))) | |
| 1901 j = DoPost(_REMOTE, '/modalities/orthanctest/store', str(i), 'text/plain') | |
| 1902 self.assertEqual(1, len(DoGet(_LOCAL, '/instances'))) | |
| 18 | 1903 |
| 1904 | |
| 1905 def test_anonymize_instance(self): | |
| 1906 def AnonymizeAndUpload(instanceId, parameters): | |
| 1907 return DoPost(_REMOTE, '/instances', DoPost(_REMOTE, '/instances/%s/anonymize' % instanceId, parameters, | |
| 1908 'application/json'), 'application/dicom')['ID'] | |
| 1909 | |
| 1910 def ModifyAndUpload(instanceId, parameters): | |
| 1911 return DoPost(_REMOTE, '/instances', DoPost(_REMOTE, '/instances/%s/modify' % instanceId, parameters, | |
| 1912 'application/json'), 'application/dicom')['ID'] | |
| 1913 | |
| 1914 a = UploadInstance(_REMOTE, 'PrivateMDNTags.dcm')['ID'] | |
| 1915 s1 = DoGet(_REMOTE, '/instances/%s/content/PatientName' % a) | |
| 1916 s2 = DoGet(_REMOTE, '/instances/%s/content/00e1-10c2' % a) # Some private tag | |
| 1917 s3 = DoGet(_REMOTE, '/instances/%s/content/StudyDescription' % a) | |
| 1918 s4 = DoGet(_REMOTE, '/instances/%s/content/SeriesDescription' % a) | |
| 1919 s5 = DoGet(_REMOTE, '/instances/%s/content/InstitutionName' % a) | |
| 1920 | |
| 1921 b = AnonymizeAndUpload(a, '{}') | |
| 1922 self.assertNotEqual(s1, DoGet(_REMOTE, '/instances/%s/content/PatientName' % b)) | |
| 1923 self.assertRaises(Exception, lambda: DoGet(_REMOTE, '/instances/%s/content/00e1-10c2' % b)) | |
| 1924 | |
| 1925 # Keep private tag (only OK since Orthanc 0.8.0) | |
| 1926 b = AnonymizeAndUpload(a, '{"Keep":["00e1-10c2"]}') | |
| 1927 self.assertNotEqual(s1, DoGet(_REMOTE, '/instances/%s/content/PatientName' % b)) | |
| 1928 self.assertEqual(s2, DoGet(_REMOTE, '/instances/%s/content/00e1-10c2' % b)) | |
| 1929 | |
| 1930 b = AnonymizeAndUpload(a, '{"Keep":["00e1,10c2","PatientName"]}') | |
| 1931 self.assertEqual(s1, DoGet(_REMOTE, '/instances/%s/content/PatientName' % b)) | |
| 1932 self.assertEqual(s2, DoGet(_REMOTE, '/instances/%s/content/00e1-10c2' % b)) | |
| 1933 | |
| 1934 b = AnonymizeAndUpload(a, '{"Keep":["PatientName"],"Replace":{"00e1,10c2":"Hello"}}') | |
| 1935 self.assertEqual(s1, DoGet(_REMOTE, '/instances/%s/content/PatientName' % b)) | |
| 1936 self.assertTrue(DoGet(_REMOTE, '/instances/%s/content/00e1-10c2' % b).startswith('Hello')) | |
| 1937 | |
| 1938 # Examples from the Wiki | |
|
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1939 b = AnonymizeAndUpload(a, '{"Replace":{"PatientName":"hello","0010-0020":"world"},"Keep":["StudyDescription", "SeriesDescription"],"KeepPrivateTags": true,"Force":true}') |
| 18 | 1940 self.assertEqual('hello', DoGet(_REMOTE, '/instances/%s/content/0010-0010' % b).strip()) |
| 1941 self.assertEqual('world', DoGet(_REMOTE, '/instances/%s/content/PatientID' % b).strip()) | |
| 1942 self.assertEqual(s3, DoGet(_REMOTE, '/instances/%s/content/0008,1030' % b)) | |
| 1943 self.assertEqual(s4, DoGet(_REMOTE, '/instances/%s/content/0008,103e' % b)) | |
| 1944 self.assertEqual(s4, DoGet(_REMOTE, '/instances/%s/content/0008-103E' % b)) | |
| 1945 self.assertEqual(s2, DoGet(_REMOTE, '/instances/%s/content/00e1-10c2' % b)) | |
| 1946 DoGet(_REMOTE, '/instances/%s/content/InstitutionName' % a) | |
| 1947 self.assertRaises(Exception, lambda: DoGet(_REMOTE, '/instances/%s/content/InstitutionName' % b)) | |
| 1948 | |
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1949 b = ModifyAndUpload(a, '{"Replace":{"PatientName":"hello","PatientID":"world"},"Remove":["InstitutionName"],"RemovePrivateTags": true,"Force":true}') |
| 18 | 1950 self.assertEqual('hello', DoGet(_REMOTE, '/instances/%s/content/0010-0010' % b).strip()) |
| 1951 self.assertEqual('world', DoGet(_REMOTE, '/instances/%s/content/PatientID' % b).strip()) | |
| 1952 self.assertEqual(s3, DoGet(_REMOTE, '/instances/%s/content/0008,1030' % b)) | |
| 1953 self.assertEqual(s4, DoGet(_REMOTE, '/instances/%s/content/0008,103e' % b)) | |
| 1954 self.assertRaises(Exception, lambda: DoGet(_REMOTE, '/instances/%s/content/00e1-10c2' % b)) | |
| 1955 self.assertRaises(Exception, lambda: DoGet(_REMOTE, '/instances/%s/content/InstitutionName' % b)) | |
| 1956 | |
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1957 b = ModifyAndUpload(a, '{"Replace":{"PatientName":"hello","PatientID":"world"},"Force":true}') |
| 18 | 1958 self.assertEqual('hello', DoGet(_REMOTE, '/instances/%s/content/0010-0010' % b).strip()) |
| 1959 self.assertEqual('world', DoGet(_REMOTE, '/instances/%s/content/PatientID' % b).strip()) | |
| 1960 self.assertEqual(s2, DoGet(_REMOTE, '/instances/%s/content/00e1,10c2' % b)) | |
| 1961 self.assertEqual(s3, DoGet(_REMOTE, '/instances/%s/content/0008,1030' % b)) | |
| 1962 self.assertEqual(s4, DoGet(_REMOTE, '/instances/%s/content/0008-103E' % b)) | |
| 1963 self.assertEqual(s5, DoGet(_REMOTE, '/instances/%s/content/InstitutionName' % b)) | |
| 1964 | |
| 1965 | |
| 1966 # Test modify non-existing | |
| 1967 i = DoPost(_REMOTE, '/tools/create-dicom', | |
| 1968 json.dumps({ | |
| 1969 'PatientName' : 'Jodogne', | |
| 1970 'Modality' : 'CT', | |
| 1971 }))['ID'] | |
| 1972 | |
| 1973 self.assertEqual('Jodogne', DoGet(_REMOTE, '/instances/%s/content/PatientName' % i).strip()) | |
| 1974 self.assertRaises(Exception, lambda: DoGet(_REMOTE, '/instances/%s/content/StudyDescription' % i)) | |
| 1975 self.assertEqual('CT', DoGet(_REMOTE, '/instances/%s/content/Modality' % i).strip()) | |
| 1976 | |
| 1977 b = ModifyAndUpload(i, '{"Replace":{"StudyDescription":"hello","Modality":"world"}}') | |
| 1978 self.assertEqual('Jodogne', DoGet(_REMOTE, '/instances/%s/content/PatientName' % b).strip()) | |
| 1979 self.assertEqual('hello', DoGet(_REMOTE, '/instances/%s/content/StudyDescription' % b).strip()) | |
| 1980 self.assertEqual('world', DoGet(_REMOTE, '/instances/%s/content/Modality' % b).strip()) | |
| 1981 | |
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1982 |
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1983 def test_incoming_jpeg(self): |
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1984 def storescu(image, acceptUnknownSopClassUid): |
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1985 if acceptUnknownSopClassUid: |
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1986 tmp = [ '-xf', GetDatabasePath('UnknownSopClassUid.cfg'), 'Default' ] |
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1987 else: |
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1988 tmp = [ '-xs' ] |
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1989 |
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1990 with open(os.devnull, 'w') as FNULL: |
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1991 subprocess.check_call([ FindExecutable('storescu') ] + tmp + |
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1992 [ _REMOTE['Server'], str(_REMOTE['DicomPort']), |
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1993 GetDatabasePath(image) ], |
|
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1994 stderr = FNULL) |
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1995 |
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1996 self.assertEqual(0, len(DoGet(_REMOTE, '/patients'))) |
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1997 InstallLuaScript('Lua/TransferSyntaxDisable.lua') |
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1998 self.assertRaises(Exception, lambda: storescu('Knix/Loc/IM-0001-0001.dcm', False)) |
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1999 self.assertRaises(Exception, lambda: storescu('UnknownSopClassUid.dcm', True)) |
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2000 self.assertEqual(0, len(DoGet(_REMOTE, '/patients'))) |
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2001 InstallLuaScript('Lua/TransferSyntaxEnable.lua') |
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2002 DoPost(_REMOTE, '/tools/execute-script', "print('All special transfer syntaxes are now accepted')") |
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2003 storescu('Knix/Loc/IM-0001-0001.dcm', False) |
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2004 storescu('UnknownSopClassUid.dcm', True) |
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2005 self.assertEqual(2, len(DoGet(_REMOTE, '/patients'))) |
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2006 |
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2007 |
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2008 def test_storescu_jpeg(self): |
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2009 self.assertEqual(0, len(DoGet(_REMOTE, '/exports')['Exports'])) |
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2010 |
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2011 knixStudy = 'b9c08539-26f93bde-c81ab0d7-bffaf2cb-a4d0bdd0' |
| 64 | 2012 i = UploadInstance(_REMOTE, 'Knix/Loc/IM-0001-0001.dcm')['ID'] |
| 2013 | |
| 2014 # This is JPEG lossless | |
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2015 self.assertEqual('1.2.840.10008.1.2.4.70', DoGet(_REMOTE, '/instances/%s/header' % i)['0002,0010']['Value']) |
| 64 | 2016 self.assertEqual('1.2.840.10008.1.2.4.70', DoGet(_REMOTE, '/instances/%s/header?simplify' % i)['TransferSyntaxUID']) |
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2017 self.assertEqual('1.2.840.10008.1.2.4.70', DoGet(_REMOTE, '/instances/%s/header?short' % i)['0002,0010']) |
| 64 | 2018 |
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2019 UploadInstance(_REMOTE, 'Knix/Loc/IM-0001-0002.dcm') |
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2020 UploadInstance(_REMOTE, 'Knix/Loc/IM-0001-0003.dcm') |
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2021 |
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2022 a = UploadInstance(_REMOTE, 'Brainix/Flair/IM-0001-0001.dcm')['ID'] |
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2023 b = UploadInstance(_REMOTE, 'ColorTestImageJ.dcm')['ID'] |
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2024 self.assertEqual(0, len(DoGet(_LOCAL, '/instances'))) |
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2025 DoPost(_REMOTE, '/modalities/orthanctest/store', [ knixStudy, a, b ]) |
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2026 self.assertEqual(5, len(DoGet(_LOCAL, '/instances'))) |
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2027 |
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2028 self.assertEqual(3, len(DoGet(_REMOTE, '/exports')['Exports'])) |
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2029 |
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2030 DropOrthanc(_REMOTE) |
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2031 self.assertEqual(0, len(DoGet(_REMOTE, '/exports')['Exports'])) |
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2032 |
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2033 |
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2034 def test_pixel_data(self): |
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2035 jpeg = UploadInstance(_REMOTE, 'Knix/Loc/IM-0001-0001.dcm')['ID'] |
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2036 color = UploadInstance(_REMOTE, 'ColorTestImageJ.dcm')['ID'] |
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2037 phenix = UploadInstance(_REMOTE, 'Phenix/IM-0001-0001.dcm')['ID'] |
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2038 |
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2039 phenixSize = 358 * 512 * 2 |
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2040 colorSize = 1000 * 1000 * 3 |
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2041 jpegSize = 51918 |
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2042 |
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2043 self.assertEqual(1, len(DoGet(_REMOTE, '/instances/%s/content/7fe0-0010' % phenix))) |
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2044 self.assertEqual(1, len(DoGet(_REMOTE, '/instances/%s/content/7fe0-0010' % color))) |
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2045 self.assertEqual(2, len(DoGet(_REMOTE, '/instances/%s/content/7fe0-0010' % jpeg))) |
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2046 |
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2047 self.assertEqual(0, len(DoGet(_REMOTE, '/instances/%s/content/7fe0-0010/0' % jpeg))) |
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2048 self.assertEqual(jpegSize, len(DoGet(_REMOTE, '/instances/%s/content/7fe0-0010/1' % jpeg))) |
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2049 |
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2050 self.assertEqual(phenixSize, len(DoGet(_REMOTE, '/instances/%s/content/7fe0-0010/0' % phenix))) |
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2051 self.assertEqual(colorSize, len(DoGet(_REMOTE, '/instances/%s/content/7fe0-0010/0' % color))) |
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2052 |
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2053 |
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2054 def test_decode_brainix(self): |
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2055 brainix = [ |
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2056 UploadInstance(_REMOTE, 'Brainix/Epi/IM-0001-0001.dcm')['ID'], # (*) |
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2057 UploadInstance(_REMOTE, 'Formats/JpegLossless.dcm')['ID'], # JPEG-LS, same as (*) (since Orthanc 0.7.6) |
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2058 UploadInstance(_REMOTE, 'Formats/Jpeg.dcm')['ID'], # JPEG, same as (*) (since Orthanc 0.7.6) |
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2059 ] |
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2060 h = '6fb11b932d535c2be04beabd99793ff8' |
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2061 maxValue = 426.0 |
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2062 |
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2063 truth = Image.open(GetDatabasePath('Formats/Brainix.png')) |
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2064 for i in brainix: |
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2065 self.AssertSameImages(truth.getdata(), '/instances/%s/image-int16' % i) |
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2066 self.AssertSameImages(truth.getdata(), '/instances/%s/image-uint16' % i) |
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2067 |
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2068 truth2 = map(lambda x: min(255, x), truth.getdata()) |
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2069 for i in brainix: |
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2070 self.AssertSameImages(truth2, '/instances/%s/image-uint8' % i) |
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|
2071 |
|
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parents:
18
diff
changeset
|
2072 truth2 = map(lambda x: x * 255.0 / maxValue, truth.getdata()) |
|
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tests of image decoding
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parents:
18
diff
changeset
|
2073 for i in brainix: |
|
2a29bcff60a7
tests of image decoding
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parents:
18
diff
changeset
|
2074 self.AssertSameImages(truth2, '/instances/%s/preview' % i) |
|
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tests of image decoding
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parents:
18
diff
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|
2075 |
|
2a29bcff60a7
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parents:
18
diff
changeset
|
2076 for i in brainix: |
|
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tests of image decoding
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parents:
18
diff
changeset
|
2077 self.assertEqual(h, ComputeMD5(DoGet(_REMOTE, '/instances/%s/matlab' % i))) |
|
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parents:
18
diff
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|
2078 |
|
2a29bcff60a7
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parents:
18
diff
changeset
|
2079 |
|
2a29bcff60a7
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parents:
18
diff
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|
2080 def test_decode_color(self): |
|
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parents:
18
diff
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2081 imagej = UploadInstance(_REMOTE, 'ColorTestImageJ.dcm')['ID'] |
|
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parents:
18
diff
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|
2082 color = UploadInstance(_REMOTE, 'ColorTestMalaterre.dcm')['ID'] |
|
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parents:
18
diff
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|
2083 |
|
2a29bcff60a7
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parents:
18
diff
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|
2084 for i in [ imagej, color ]: |
|
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parents:
18
diff
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|
2085 for j in [ 'image-uint8', 'image-uint16', 'image-int16' ]: |
|
2a29bcff60a7
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parents:
18
diff
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|
2086 self.assertRaises(Exception, lambda: DoGet(_REMOTE, '/instances/%s/%s' % (i, j))) |
|
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parents:
18
diff
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|
2087 |
|
2a29bcff60a7
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Sebastien Jodogne <s.jodogne@gmail.com>
parents:
18
diff
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|
2088 self.assertEqual('c14c687f7a1ea9fe022479fc87c67274', ComputeMD5(DoGet(_REMOTE, '/instances/%s/preview' % imagej))) |
|
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parents:
18
diff
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|
2089 self.assertEqual('a87d122918a56f803bcfe9d2586b9125', ComputeMD5(DoGet(_REMOTE, '/instances/%s/preview' % color))) |
|
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parents:
18
diff
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|
2090 |
|
2a29bcff60a7
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parents:
18
diff
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|
2091 self.assertEqual('30cc46bfa7aba77a40e4178f6184c25a', ComputeMD5(DoGet(_REMOTE, '/instances/%s/matlab' % imagej))) |
|
2a29bcff60a7
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parents:
18
diff
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|
2092 self.assertEqual('ff195005cef06b59666fd220a9b4cd9a', ComputeMD5(DoGet(_REMOTE, '/instances/%s/matlab' % color))) |
|
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parents:
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diff
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|
2093 |
|
2a29bcff60a7
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parents:
18
diff
changeset
|
2094 |
|
2a29bcff60a7
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parents:
18
diff
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|
2095 def test_decode_rf(self): |
|
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parents:
18
diff
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|
2096 rf = UploadInstance(_REMOTE, 'KarstenHilbertRF.dcm')['ID'] |
|
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parents:
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diff
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|
2097 truth = Image.open(GetDatabasePath('Formats/KarstenHilbertRF.png')) |
|
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parents:
18
diff
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|
2098 |
|
2a29bcff60a7
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parents:
18
diff
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|
2099 self.AssertSameImages(truth.getdata(), '/instances/%s/image-uint8' % rf) |
|
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18
diff
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|
2100 self.AssertSameImages(truth.getdata(), '/instances/%s/image-uint16' % rf) |
|
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parents:
18
diff
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|
2101 self.AssertSameImages(truth.getdata(), '/instances/%s/image-int16' % rf) |
|
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parents:
18
diff
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|
2102 self.AssertSameImages(truth.getdata(), '/instances/%s/preview' % rf) |
|
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parents:
18
diff
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|
2103 |
|
2a29bcff60a7
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parents:
18
diff
changeset
|
2104 self.assertEqual('42254d70efd2f4a1b8f3455909689f0e', ComputeMD5(DoGet(_REMOTE, '/instances/%s/matlab' % rf))) |
|
2a29bcff60a7
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parents:
18
diff
changeset
|
2105 |
|
2a29bcff60a7
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Sebastien Jodogne <s.jodogne@gmail.com>
parents:
18
diff
changeset
|
2106 |
|
2a29bcff60a7
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parents:
18
diff
changeset
|
2107 def test_decode_multiframe(self): |
|
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parents:
18
diff
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|
2108 mf = UploadInstance(_REMOTE, 'Multiframe.dcm')['ID'] |
|
2a29bcff60a7
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parents:
18
diff
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|
2109 |
|
2a29bcff60a7
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parents:
18
diff
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|
2110 # Test the first frame |
|
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parents:
18
diff
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|
2111 truth = Image.open(GetDatabasePath('Formats/Multiframe0.png')) |
|
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Sebastien Jodogne <s.jodogne@gmail.com>
parents:
18
diff
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|
2112 self.AssertSameImages(truth.getdata(), '/instances/%s/image-uint8' % mf) |
|
2a29bcff60a7
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parents:
18
diff
changeset
|
2113 self.AssertSameImages(truth.getdata(), '/instances/%s/image-uint16' % mf) |
|
2a29bcff60a7
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parents:
18
diff
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|
2114 self.AssertSameImages(truth.getdata(), '/instances/%s/image-int16' % mf) |
|
2a29bcff60a7
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parents:
18
diff
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|
2115 self.AssertSameImages(truth.getdata(), '/instances/%s/preview' % mf) |
|
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parents:
18
diff
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|
2116 self.assertEqual('9812b99d93bbcd4e7684ded089b5dfb3', ComputeMD5(DoGet(_REMOTE, '/instances/%s/matlab' % mf))) |
|
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parents:
18
diff
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|
2117 |
|
2a29bcff60a7
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18
diff
changeset
|
2118 self.AssertSameImages(truth.getdata(), '/instances/%s/frames/0/image-uint16' % mf) |
|
2a29bcff60a7
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parents:
18
diff
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|
2119 |
|
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18
diff
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|
2120 # Test the last frame |
|
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parents:
18
diff
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|
2121 truth = Image.open(GetDatabasePath('Formats/Multiframe75.png')) |
|
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parents:
18
diff
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|
2122 self.AssertSameImages(truth.getdata(), '/instances/%s/frames/75/image-uint16' % mf) |
|
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parents:
18
diff
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|
2123 |
|
2a29bcff60a7
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Sebastien Jodogne <s.jodogne@gmail.com>
parents:
18
diff
changeset
|
2124 |
|
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Sebastien Jodogne <s.jodogne@gmail.com>
parents:
18
diff
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|
2125 def test_decode_signed(self): |
|
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parents:
18
diff
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|
2126 signed = UploadInstance(_REMOTE, 'SignedCT.dcm')['ID'] |
|
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parents:
18
diff
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|
2127 minValue = -2000 |
|
2a29bcff60a7
tests of image decoding
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parents:
18
diff
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|
2128 maxValue = 4042 |
|
2a29bcff60a7
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parents:
18
diff
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|
2129 |
|
2a29bcff60a7
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Sebastien Jodogne <s.jodogne@gmail.com>
parents:
18
diff
changeset
|
2130 truth = Image.open(GetDatabasePath('Formats/SignedCT.png')) |
|
2a29bcff60a7
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parents:
18
diff
changeset
|
2131 self.AssertSameImages(truth.getdata(), '/instances/%s/image-int16' % signed) |
|
2a29bcff60a7
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parents:
18
diff
changeset
|
2132 |
|
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parents:
18
diff
changeset
|
2133 truth2 = map(lambda x: 0 if x >= 32768 else x, truth.getdata()) |
|
2a29bcff60a7
tests of image decoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
18
diff
changeset
|
2134 self.AssertSameImages(truth2, '/instances/%s/image-uint16' % signed) |
|
2a29bcff60a7
tests of image decoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
18
diff
changeset
|
2135 |
|
2a29bcff60a7
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Sebastien Jodogne <s.jodogne@gmail.com>
parents:
18
diff
changeset
|
2136 truth3 = map(lambda x: 255 if x >= 256 else x, truth2) |
|
2a29bcff60a7
tests of image decoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
18
diff
changeset
|
2137 self.AssertSameImages(truth3, '/instances/%s/image-uint8' % signed) |
|
2a29bcff60a7
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Sebastien Jodogne <s.jodogne@gmail.com>
parents:
18
diff
changeset
|
2138 |
|
2a29bcff60a7
tests of image decoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
18
diff
changeset
|
2139 tmp = map(lambda x: x - 65536 if x >= 32768 else x, truth.getdata()) |
|
2a29bcff60a7
tests of image decoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
18
diff
changeset
|
2140 tmp = map(lambda x: (255.0 * (x - minValue)) / (maxValue - minValue), tmp) |
|
2a29bcff60a7
tests of image decoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
18
diff
changeset
|
2141 self.AssertSameImages(tmp, '/instances/%s/preview' % signed) |
|
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parents:
18
diff
changeset
|
2142 |
|
2a29bcff60a7
tests of image decoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
18
diff
changeset
|
2143 self.assertEqual('b57e6c872a3da50877c7da689b03a444', ComputeMD5(DoGet(_REMOTE, '/instances/%s/matlab' % signed))) |
| 22 | 2144 |
| 2145 | |
|
46
85b2e36ed392
explicit GoogleCode source
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
45
diff
changeset
|
2146 def test_googlecode_issue_32(self): |
|
92
dbcbffb889da
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parents:
89
diff
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|
2147 self.assertRaises(Exception, lambda: DoPut(_REMOTE, '/tools/default-encoding', 'nope')) |
|
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parents:
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diff
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|
2148 self.assertEqual('Windows1251', DoPut(_REMOTE, '/tools/default-encoding', 'Windows1251')) |
|
dbcbffb889da
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parents:
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diff
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|
2149 self.assertEqual('Windows1251', DoGet(_REMOTE, '/tools/default-encoding')) |
|
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diff
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|
2150 |
| 22 | 2151 f = UploadInstance(_REMOTE, 'Issue32.dcm')['ID'] |
| 2152 tags = DoGet(_REMOTE, '/instances/%s/tags?simplify' % f) | |
| 2153 self.assertEqual(u'Рентгенография', tags['SeriesDescription']) | |
| 2154 self.assertEqual(u'Таз', tags['BodyPartExamined']) | |
| 2155 self.assertEqual(u'Прямая', tags['ViewPosition']) | |
| 2156 | |
|
92
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parents:
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diff
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|
2157 # Replay the same test using Latin1 as default encoding: This must fail |
|
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parents:
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|
2158 self.assertEqual('Latin1', DoPut(_REMOTE, '/tools/default-encoding', 'Latin1')) |
|
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|
2159 |
|
dbcbffb889da
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89
diff
changeset
|
2160 DoDelete(_REMOTE, '/instances/%s' % f) |
|
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|
2161 f = UploadInstance(_REMOTE, 'Issue32.dcm')['ID'] |
|
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|
2162 tags = DoGet(_REMOTE, '/instances/%s/tags?simplify' % f) |
|
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diff
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|
2163 self.assertNotEqual(u'Рентгенография', tags['SeriesDescription']) |
|
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|
2164 |
|
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|
2165 |
| 22 | 2166 def test_encodings(self): |
| 23 | 2167 # Latin-1 (ISO_IR 100) |
| 22 | 2168 brainix = UploadInstance(_REMOTE, 'Brainix/Epi/IM-0001-0001.dcm')['ID'] |
| 2169 tags = DoGet(_REMOTE, '/instances/%s/tags?simplify' % brainix) | |
| 2170 self.assertEqual(u'IRM cérébrale, neuro-crâne', tags['StudyDescription']) | |
| 23 | 2171 |
| 2172 # Latin-2 (ISO_IR 101) | |
| 2173 a = UploadInstance(_REMOTE, 'MarekLatin2.dcm')['ID'] | |
| 2174 i = DoGet(_REMOTE, '/instances/%s/simplified-tags' % a) | |
| 2175 # dcm2xml MarekLatin2.dcm | iconv -f latin2 -t utf-8 | xmllint --format - | |
| 2176 self.assertEqual('Imię i Nazwisko osoby opisującej', | |
| 2177 i['ContentSequence'][4]['ConceptNameCodeSequence'][0]['CodeMeaning'].encode('utf-8')) | |
| 2178 | |
|
26
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diff
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|
2179 |
|
040f6ef1394a
test_storescu_custom_aet
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diff
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|
2180 def test_storescu_custom_aet(self): |
|
040f6ef1394a
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diff
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|
2181 # This tests a feature introduced in Orthanc 0.9.1: "Custom |
|
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test_storescu_custom_aet
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diff
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|
2182 # setting of the local AET during C-Store SCU (both in Lua and |
|
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diff
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|
2183 # in the REST API)." |
|
040f6ef1394a
test_storescu_custom_aet
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parents:
23
diff
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|
2184 # https://groups.google.com/forum/#!msg/orthanc-users/o5qMULformU/wZjW2iSaMcAJ |
|
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test_storescu_custom_aet
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diff
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|
2185 |
|
040f6ef1394a
test_storescu_custom_aet
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diff
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|
2186 self.assertEqual(0, len(DoGet(_LOCAL, '/patients'))) |
|
040f6ef1394a
test_storescu_custom_aet
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diff
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|
2187 |
|
040f6ef1394a
test_storescu_custom_aet
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diff
changeset
|
2188 a = UploadInstance(_REMOTE, 'Knee/T1/IM-0001-0001.dcm') |
|
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|
2189 b = UploadInstance(_REMOTE, 'Knee/T1/IM-0001-0002.dcm') |
|
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2190 c = UploadInstance(_REMOTE, 'Knee/T1/IM-0001-0003.dcm') |
|
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2191 |
|
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2192 j = DoPost(_REMOTE, '/modalities/orthanctest/store', { |
|
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2193 'LocalAet' : 'YOP', |
|
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2194 'Resources' : [ a['ID'], b['ID'] ] |
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2195 }) |
|
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2196 |
|
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2197 self.assertEqual(2, len(DoGet(_LOCAL, '/instances'))) |
|
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2198 self.assertEqual('YOP', DoGet(_LOCAL, '/instances/%s/metadata/RemoteAET' % a['ID'])) |
|
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|
2199 |
|
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|
2200 DropOrthanc(_LOCAL) |
|
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|
2201 self.assertEqual(0, len(DoGet(_LOCAL, '/instances'))) |
|
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|
2202 |
|
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|
2203 j = DoPost(_REMOTE, '/modalities/orthanctest/store', { |
|
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|
2204 'Resources' : [ c['ID'] ] |
|
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|
2205 }) |
|
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|
2206 |
|
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2207 self.assertEqual(1, len(DoGet(_LOCAL, '/instances'))) |
|
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|
2208 self.assertEqual('ORTHANC', DoGet(_LOCAL, '/instances/%s/metadata/RemoteAET' % c['ID'])) |
|
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|
2209 |
|
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|
2210 DropOrthanc(_REMOTE) |
|
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|
2211 DropOrthanc(_LOCAL) |
|
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|
2212 |
|
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|
2213 InstallLuaScript('Lua/AutoroutingChangeAet.lua') |
|
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|
2214 DoPost(_REMOTE, '/tools/execute-script', 'aet = "HELLO"', 'application/lua') |
|
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|
2215 |
|
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|
2216 self.assertEqual(0, len(DoGet(_LOCAL, '/instances'))) |
|
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|
2217 UploadInstance(_REMOTE, 'Knee/T1/IM-0001-0001.dcm') |
|
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|
2218 WaitEmpty(_REMOTE) |
|
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|
2219 self.assertEqual(1, len(DoGet(_LOCAL, '/instances'))) |
|
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2220 self.assertEqual('HELLO', DoGet(_LOCAL, '/instances/%s/metadata/RemoteAET' % a['ID'])) |
|
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2221 |
|
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|
2222 DoPost(_REMOTE, '/tools/execute-script', 'aet = nill', 'application/lua') |
|
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2223 UploadInstance(_REMOTE, 'Knee/T1/IM-0001-0002.dcm') |
|
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2224 WaitEmpty(_REMOTE) |
|
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2225 self.assertEqual(2, len(DoGet(_LOCAL, '/instances'))) |
|
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|
2226 self.assertEqual('ORTHANC', DoGet(_LOCAL, '/instances/%s/metadata/RemoteAET' % b['ID'])) |
|
34
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2227 |
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2228 def test_resources_since_limit(self): |
|
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2229 # Upload 16 instances |
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2230 for i in range(4): |
|
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2231 UploadInstance(_REMOTE, 'Brainix/Flair/IM-0001-000%d.dcm' % (i + 1)) |
|
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2232 UploadInstance(_REMOTE, 'Brainix/Epi/IM-0001-000%d.dcm' % (i + 1)) |
|
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2233 UploadInstance(_REMOTE, 'Knee/T1/IM-0001-000%d.dcm' % (i + 1)) |
|
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|
2234 UploadInstance(_REMOTE, 'Knee/T2/IM-0001-000%d.dcm' % (i + 1)) |
|
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2235 |
|
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2236 self.assertEqual(2, len(DoGet(_REMOTE, '/patients'))) |
|
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2237 self.assertEqual(2, len(DoGet(_REMOTE, '/studies'))) |
|
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2238 self.assertEqual(4, len(DoGet(_REMOTE, '/series'))) |
|
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|
2239 self.assertEqual(16, len(DoGet(_REMOTE, '/instances'))) |
|
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|
2240 |
|
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2241 self.assertRaises(Exception, lambda: DoGet(_REMOTE, '/patients&since=10' % i)) |
|
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2242 self.assertRaises(Exception, lambda: DoGet(_REMOTE, '/patients&limit=10' % i)) |
|
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2243 |
|
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2244 self.assertEqual(0, len(DoGet(_REMOTE, '/patients?since=0&limit=0'))) |
|
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|
2245 self.assertEqual(2, len(DoGet(_REMOTE, '/patients?since=0&limit=100'))) |
|
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2246 self.assertEqual(2, len(DoGet(_REMOTE, '/studies?since=0&limit=100'))) |
|
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|
2247 self.assertEqual(4, len(DoGet(_REMOTE, '/series?since=0&limit=100'))) |
|
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|
2248 self.assertEqual(16, len(DoGet(_REMOTE, '/instances?since=0&limit=100'))) |
|
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|
2249 self.assertEqual(1, len(DoGet(_REMOTE, '/patients?since=1&limit=100'))) |
|
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|
2250 self.assertEqual(0, len(DoGet(_REMOTE, '/patients?since=2&limit=100'))) |
|
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|
2251 self.assertEqual(0, len(DoGet(_REMOTE, '/patients?since=3&limit=100'))) |
|
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2252 self.assertEqual(1, len(DoGet(_REMOTE, '/studies?since=1&limit=100'))) |
|
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|
2253 self.assertEqual(3, len(DoGet(_REMOTE, '/series?since=1&limit=100'))) |
|
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|
2254 self.assertEqual(2, len(DoGet(_REMOTE, '/series?since=2&limit=100'))) |
|
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|
2255 self.assertEqual(1, len(DoGet(_REMOTE, '/series?since=3&limit=100'))) |
|
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|
2256 self.assertEqual(0, len(DoGet(_REMOTE, '/series?since=4&limit=100'))) |
|
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|
2257 self.assertEqual(0, len(DoGet(_REMOTE, '/series?since=100&limit=100'))) |
|
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|
2258 self.assertEqual(15, len(DoGet(_REMOTE, '/instances?since=1&limit=100'))) |
|
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|
2259 |
|
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|
2260 for limit in [ 1, 2, 3, 7, 16, 17 ]: |
|
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|
2261 s = {} |
|
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|
2262 since = 0 |
|
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|
2263 while True: |
|
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|
2264 t = DoGet(_REMOTE, '/instances?since=%d&limit=%d' % (since, limit)) |
|
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2265 if len(t) == 0: |
|
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|
2266 break |
|
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|
2267 |
|
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|
2268 since += len(t) |
|
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|
2269 for i in t: |
|
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|
2270 s[i] = None |
|
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|
2271 |
|
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|
2272 self.assertEqual(16, len(s)) |
|
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|
2273 for instance in DoGet(_REMOTE, '/instances'): |
|
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|
2274 self.assertTrue(instance in s) |
| 36 | 2275 |
| 2276 | |
| 2277 def test_create_pdf(self): | |
| 2278 # Upload 4 instances | |
| 2279 brainixInstance = UploadInstance(_REMOTE, 'Brainix/Flair/IM-0001-0001.dcm')['ID'] | |
| 2280 UploadInstance(_REMOTE, 'Brainix/Epi/IM-0001-0001.dcm') | |
| 2281 UploadInstance(_REMOTE, 'Knee/T1/IM-0001-0001.dcm') | |
| 2282 UploadInstance(_REMOTE, 'Knee/T2/IM-0001-0001.dcm') | |
| 2283 | |
| 2284 brainixPatient = '16738bc3-e47ed42a-43ce044c-a3414a45-cb069bd0' | |
| 2285 brainixStudy = '27f7126f-4f66fb14-03f4081b-f9341db2-53925988' | |
| 2286 brainixEpi = '2ac1316d-3e432022-62eabff2-c59f5475-9b1ac3f8' | |
| 2287 | |
| 2288 with open(GetDatabasePath('HelloWorld.pdf'), 'rb') as f: | |
| 2289 pdf = f.read() | |
| 2290 | |
| 2291 i = DoPost(_REMOTE, '/tools/create-dicom', | |
| 2292 json.dumps({ | |
| 2293 'Tags' : { | |
| 2294 'PatientName' : 'Jodogne', | |
| 2295 'Modality' : 'CT', | |
| 2296 }, | |
| 2297 'Content' : 'data:application/pdf;base64,' + base64.b64encode(pdf) | |
| 2298 })) | |
| 2299 | |
| 2300 self.assertEqual('Jodogne', DoGet(_REMOTE, '/instances/%s/content/PatientName' % i['ID']).strip()) | |
| 2301 self.assertEqual('OT', DoGet(_REMOTE, '/instances/%s/content/Modality' % i['ID']).strip()) | |
| 2302 | |
| 2303 b = DoGet(_REMOTE, '/instances/%s/content/0042-0011' % i['ID']) | |
| 2304 self.assertEqual(len(b), len(pdf) + 1) | |
| 2305 self.assertEqual(ComputeMD5(b), ComputeMD5(pdf + '\0')) | |
| 2306 | |
| 2307 self.assertRaises(Exception, lambda: DoPost(_REMOTE, '/tools/create-dicom', | |
| 2308 json.dumps({ | |
| 2309 'Parent' : brainixPatient, | |
| 2310 'Tags' : { | |
| 2311 'PatientName' : 'Jodogne', | |
| 2312 } | |
| 2313 }))) | |
| 2314 | |
| 2315 i = DoPost(_REMOTE, '/tools/create-dicom', | |
| 2316 json.dumps({ | |
| 2317 'Parent' : brainixPatient, | |
| 2318 'Tags' : { 'StudyDescription' : 'PDF^Patient' }, | |
| 2319 'Content' : 'data:application/pdf;base64,' + base64.b64encode(pdf) | |
| 2320 })) | |
| 2321 | |
| 2322 self.assertEqual(brainixPatient, DoGet(_REMOTE, '/instances/%s/patient' % i['ID'])['ID']) | |
| 2323 | |
| 2324 i = DoPost(_REMOTE, '/tools/create-dicom', | |
| 2325 json.dumps({ | |
| 2326 'Parent' : brainixStudy, | |
| 2327 'Tags' : { 'SeriesDescription' : 'PDF^Study' }, | |
| 2328 'Content' : 'data:application/pdf;base64,' + base64.b64encode(pdf) | |
| 2329 })) | |
| 2330 | |
| 2331 self.assertEqual(brainixStudy, DoGet(_REMOTE, '/instances/%s/study' % i['ID'])['ID']) | |
| 2332 | |
| 2333 i = DoPost(_REMOTE, '/tools/create-dicom', | |
| 2334 json.dumps({ | |
| 2335 'Parent' : brainixEpi, | |
| 37 | 2336 'Tags' : { 'SpecificCharacterSet' : 'ISO_IR 13' }, |
| 36 | 2337 'Content' : 'data:application/pdf;base64,' + base64.b64encode(pdf) |
| 2338 })) | |
| 2339 | |
| 2340 self.assertEqual(brainixEpi, DoGet(_REMOTE, '/instances/%s/series' % i['ID'])['ID']) | |
| 2341 | |
| 2342 b = DoGet(_REMOTE, '/instances/%s/pdf' % i['ID']) | |
| 2343 self.assertEqual(len(b), len(pdf)) | |
| 2344 self.assertEqual(ComputeMD5(b), ComputeMD5(pdf)) | |
| 2345 | |
| 2346 self.assertRaises(Exception, lambda: DoGet(_REMOTE, '/instances/%s/pdf' % brainixInstance)) | |
| 38 | 2347 |
| 2348 | |
| 2349 def test_create_series(self): | |
| 2350 i = DoPost(_REMOTE, '/tools/create-dicom', | |
| 2351 json.dumps({ | |
| 2352 'Tags' : { | |
| 40 | 2353 'SpecificCharacterSet' : 'ISO_IR 100', |
| 2354 'PatientName' : 'Sébastien Jodogne', | |
| 38 | 2355 'Modality' : 'CT', |
| 2356 }, | |
| 2357 'Content' : [ | |
| 40 | 2358 { |
| 2359 'Content': 'data:image/png;base64,iVBORw0KGgoAAAANSUhEUgAAAAUAAAAFCAYAAACNbyblAAAAHElEQVQI12P4//8/w38GIAXDIBKE0DHxgljNBAAO9TXL0Y4OHwAAAABJRU5ErkJggg==', # red dot in RGBA | |
| 2360 'Tags' : { 'ImageComments' : 'Tutu' } | |
| 2361 }, | |
| 38 | 2362 'data:image/png;base64,iVBORw0KGgoAAAANSUhEUgAAABAAAAAQCAYAAAAf8/9hAAAAoUlEQVQ4jZ2SWw3EIBREjwUsYAELa2EtoAULFUCyXAtroRZqoRbox254BdLC/DZnZjoXWJFgCDg8egW2CBEhEnDzyRk+Ecxz2KP/0AL8S99T+jQccAVs22qKwAuPuq0uyNg9cPLh3am+pe/dkHLZtqJHj6vXJrZ7nvzvxxgemXgUwnGfXqpee09mUwp8m022OYP6bLF7mVuVe0y/umxinsAXRd9z0k1ubWsAAAAASUVORK5CYII=', |
| 2363 ] | |
| 2364 })) | |
| 2365 | |
| 2366 s = DoGet(_REMOTE, i['Path']) | |
| 2367 self.assertEqual('Series', s['Type']) | |
| 2368 self.assertEqual(s['ID'], i['ID']) | |
| 2369 self.assertEqual(2, len(s['Instances'])) | |
| 39 | 2370 self.assertEqual(2, s['ExpectedNumberOfInstances']) |
| 2371 self.assertEqual('Complete', s['Status']) | |
| 40 | 2372 |
| 2373 a = DoGet(_REMOTE, '/instances/%s/tags?simplify' % s['Instances'][0]) | |
| 2374 b = DoGet(_REMOTE, '/instances/%s/tags?simplify' % s['Instances'][1]) | |
| 2375 self.assertTrue('ImageComments' in a or 'ImageComments' in b) | |
| 2376 if 'ImageComments' in a: | |
| 2377 self.assertEqual('Tutu', a['ImageComments']) | |
| 2378 else: | |
| 2379 self.assertEqual('Tutu', b['ImageComments']) | |
| 2380 | |
| 2381 patient = DoGet(_REMOTE, '/instances/%s/patient' % s['Instances'][0]) | |
| 2382 self.assertEqual(patient['MainDicomTags']['PatientName'].encode('utf-8'), | |
| 2383 'Sébastien Jodogne') | |
| 47 | 2384 |
| 2385 | |
| 2386 def test_create_binary(self): | |
| 2387 binary = ''.join(map(chr, range(256))) | |
| 2388 encoded = 'data:application/octet-stream;base64,' + base64.b64encode(binary) | |
| 2389 tags = { | |
| 2390 'PatientName' : 'Jodogne', | |
| 2391 '8899-8899' : encoded | |
| 2392 } | |
| 2393 | |
| 2394 i = DoPost(_REMOTE, '/tools/create-dicom', | |
| 2395 json.dumps({ | |
| 2396 'Tags' : tags | |
| 2397 })) | |
| 2398 | |
| 2399 self.assertEqual('Jodogne', DoGet(_REMOTE, '/instances/%s/content/PatientName' % i['ID']).strip()) | |
| 2400 self.assertEqual(binary, DoGet(_REMOTE, '/instances/%s/content/8899-8899' % i['ID']).strip()) | |
| 2401 | |
| 2402 i = DoPost(_REMOTE, '/tools/create-dicom', | |
| 2403 json.dumps({ | |
| 2404 'InterpretBinaryTags' : False, | |
| 2405 'Tags' : tags | |
| 2406 })) | |
| 2407 | |
| 2408 self.assertEqual('Jodogne', DoGet(_REMOTE, '/instances/%s/content/PatientName' % i['ID']).strip()) | |
| 2409 self.assertEqual(encoded, DoGet(_REMOTE, '/instances/%s/content/8899-8899' % i['ID'])[0:-1]) | |
|
48
e4352463ff74
test_patient_ids_collision
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
47
diff
changeset
|
2410 |
|
e4352463ff74
test_patient_ids_collision
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
47
diff
changeset
|
2411 |
|
e4352463ff74
test_patient_ids_collision
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
47
diff
changeset
|
2412 def test_patient_ids_collision(self): |
|
e4352463ff74
test_patient_ids_collision
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
47
diff
changeset
|
2413 # Upload 3 instances from 3 different studies, but with the |
|
e4352463ff74
test_patient_ids_collision
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
47
diff
changeset
|
2414 # same PatientID |
|
e4352463ff74
test_patient_ids_collision
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
47
diff
changeset
|
2415 for i in range(3): |
|
e4352463ff74
test_patient_ids_collision
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
47
diff
changeset
|
2416 UploadInstance(_REMOTE, 'PatientIdsCollision/Image%d.dcm' % (i + 1)) |
|
e4352463ff74
test_patient_ids_collision
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
47
diff
changeset
|
2417 |
|
e4352463ff74
test_patient_ids_collision
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
47
diff
changeset
|
2418 a = DoPost(_REMOTE, '/tools/find', { 'Level' : 'Patient', |
|
e4352463ff74
test_patient_ids_collision
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
47
diff
changeset
|
2419 'Query' : { 'PatientName' : '*' }}) |
|
e4352463ff74
test_patient_ids_collision
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
47
diff
changeset
|
2420 self.assertEqual(1, len(a)) |
|
e4352463ff74
test_patient_ids_collision
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
47
diff
changeset
|
2421 self.assertEqual('COMMON', DoGet(_REMOTE, '/patients/%s' % a[0]) ['MainDicomTags']['PatientID']) |
|
e4352463ff74
test_patient_ids_collision
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
47
diff
changeset
|
2422 |
|
e4352463ff74
test_patient_ids_collision
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
47
diff
changeset
|
2423 a = DoPost(_REMOTE, '/tools/find', { 'Level' : 'Study', |
|
e4352463ff74
test_patient_ids_collision
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
47
diff
changeset
|
2424 'CaseSensitive' : True, |
|
e4352463ff74
test_patient_ids_collision
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
47
diff
changeset
|
2425 'Query' : { 'PatientName' : 'FOO\\HELLO' }}) |
|
e4352463ff74
test_patient_ids_collision
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
47
diff
changeset
|
2426 self.assertEqual(2, len(a)) |
|
e4352463ff74
test_patient_ids_collision
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
47
diff
changeset
|
2427 |
|
e4352463ff74
test_patient_ids_collision
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
47
diff
changeset
|
2428 a = DoPost(_REMOTE, '/tools/find', { 'Level' : 'Series', |
|
e4352463ff74
test_patient_ids_collision
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
47
diff
changeset
|
2429 'CaseSensitive' : False, |
|
e4352463ff74
test_patient_ids_collision
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
47
diff
changeset
|
2430 'Query' : { 'PatientName' : 'Foo' }}) |
|
e4352463ff74
test_patient_ids_collision
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
47
diff
changeset
|
2431 self.assertEqual(1, len(a)) |
|
e4352463ff74
test_patient_ids_collision
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
47
diff
changeset
|
2432 self.assertEqual('FOO^SERIES', DoGet(_REMOTE, '/series/%s/study' % a[0]) ['MainDicomTags']['StudyDescription']) |
|
e4352463ff74
test_patient_ids_collision
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
47
diff
changeset
|
2433 self.assertEqual('FOO', DoGet(_REMOTE, '/series/%s/study' % a[0]) ['PatientMainDicomTags']['PatientName']) |
|
e4352463ff74
test_patient_ids_collision
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
47
diff
changeset
|
2434 self.assertEqual('COMMON', DoGet(_REMOTE, '/series/%s/study' % a[0]) ['PatientMainDicomTags']['PatientID']) |
|
e4352463ff74
test_patient_ids_collision
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
47
diff
changeset
|
2435 |
|
e4352463ff74
test_patient_ids_collision
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
47
diff
changeset
|
2436 a = DoPost(_REMOTE, '/tools/find', { 'Level' : 'Study', |
|
e4352463ff74
test_patient_ids_collision
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
47
diff
changeset
|
2437 'Query' : { 'PatientName' : '*' }}) |
|
e4352463ff74
test_patient_ids_collision
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
47
diff
changeset
|
2438 self.assertEqual(3, len(a)) |
|
e4352463ff74
test_patient_ids_collision
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
47
diff
changeset
|
2439 d = map(lambda x: DoGet(_REMOTE, '/studies/%s' % x) ['MainDicomTags']['StudyDescription'], a) |
|
e4352463ff74
test_patient_ids_collision
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
47
diff
changeset
|
2440 self.assertTrue('FOO^SERIES' in d) |
|
e4352463ff74
test_patient_ids_collision
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
47
diff
changeset
|
2441 self.assertTrue('HELLO^SERIES' in d) |
|
e4352463ff74
test_patient_ids_collision
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
47
diff
changeset
|
2442 self.assertTrue('WORLD^SERIES' in d) |
|
e4352463ff74
test_patient_ids_collision
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
47
diff
changeset
|
2443 |
|
e4352463ff74
test_patient_ids_collision
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
47
diff
changeset
|
2444 d = map(lambda x: DoGet(_REMOTE, '/studies/%s' % x) ['PatientMainDicomTags']['PatientID'], a) |
|
e4352463ff74
test_patient_ids_collision
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
47
diff
changeset
|
2445 self.assertEqual(1, len(set(d))) |
|
e4352463ff74
test_patient_ids_collision
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
47
diff
changeset
|
2446 self.assertEqual('COMMON', d[0]) |
|
e4352463ff74
test_patient_ids_collision
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
47
diff
changeset
|
2447 |
|
e4352463ff74
test_patient_ids_collision
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
47
diff
changeset
|
2448 for i in a: |
|
e4352463ff74
test_patient_ids_collision
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
47
diff
changeset
|
2449 d = DoGet(_REMOTE, '/studies/%s' % i) ['MainDicomTags']['StudyDescription'] |
|
e4352463ff74
test_patient_ids_collision
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
47
diff
changeset
|
2450 p = DoGet(_REMOTE, '/studies/%s' % i) ['PatientMainDicomTags']['PatientName'] |
|
e4352463ff74
test_patient_ids_collision
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
47
diff
changeset
|
2451 self.assertEqual('%s^SERIES' % p, d) |
|
49
e7f9b8199545
test_bitbucket_issue_4
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
48
diff
changeset
|
2452 |
|
e7f9b8199545
test_bitbucket_issue_4
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
48
diff
changeset
|
2453 |
|
e7f9b8199545
test_bitbucket_issue_4
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
48
diff
changeset
|
2454 def test_bitbucket_issue_4(self): |
|
e7f9b8199545
test_bitbucket_issue_4
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
48
diff
changeset
|
2455 UploadInstance(_REMOTE, 'Brainix/Epi/IM-0001-0001.dcm') |
|
e7f9b8199545
test_bitbucket_issue_4
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
48
diff
changeset
|
2456 UploadInstance(_REMOTE, 'Brainix/Epi/IM-0001-0002.dcm') |
|
e7f9b8199545
test_bitbucket_issue_4
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
48
diff
changeset
|
2457 UploadInstance(_REMOTE, 'Brainix/Epi/IM-0001-0003.dcm') |
|
e7f9b8199545
test_bitbucket_issue_4
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
48
diff
changeset
|
2458 UploadInstance(_REMOTE, 'Formats/Jpeg.dcm') |
|
e7f9b8199545
test_bitbucket_issue_4
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
48
diff
changeset
|
2459 UploadInstance(_REMOTE, 'Formats/JpegLossless.dcm') |
|
e7f9b8199545
test_bitbucket_issue_4
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
48
diff
changeset
|
2460 UploadInstance(_REMOTE, 'Formats/Rle.dcm') |
|
e7f9b8199545
test_bitbucket_issue_4
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
48
diff
changeset
|
2461 |
|
e7f9b8199545
test_bitbucket_issue_4
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
48
diff
changeset
|
2462 self.assertEqual(0, len(DoGet(_LOCAL, '/instances'))) |
|
e7f9b8199545
test_bitbucket_issue_4
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
48
diff
changeset
|
2463 self.assertEqual(6, len(DoGet(_REMOTE, '/instances'))) |
|
e7f9b8199545
test_bitbucket_issue_4
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
48
diff
changeset
|
2464 |
|
e7f9b8199545
test_bitbucket_issue_4
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
48
diff
changeset
|
2465 p = DoGet(_REMOTE, '/patients') |
|
e7f9b8199545
test_bitbucket_issue_4
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
48
diff
changeset
|
2466 self.assertEqual(2, len(p)) |
|
e7f9b8199545
test_bitbucket_issue_4
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
48
diff
changeset
|
2467 i1 = map(lambda x: x['ID'], DoGet(_REMOTE, '/patients/%s/instances' % p[0])) |
|
e7f9b8199545
test_bitbucket_issue_4
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
48
diff
changeset
|
2468 i2 = map(lambda x: x['ID'], DoGet(_REMOTE, '/patients/%s/instances' % p[1])) |
|
e7f9b8199545
test_bitbucket_issue_4
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
48
diff
changeset
|
2469 self.assertEqual(3, len(i1)) |
|
e7f9b8199545
test_bitbucket_issue_4
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
48
diff
changeset
|
2470 self.assertEqual(3, len(i2)) |
|
e7f9b8199545
test_bitbucket_issue_4
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
48
diff
changeset
|
2471 |
|
e7f9b8199545
test_bitbucket_issue_4
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
48
diff
changeset
|
2472 j = DoPost(_REMOTE, '/modalities/orthanctest/store', i2[0:1] + i1 + i2[1:3]) |
|
e7f9b8199545
test_bitbucket_issue_4
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
48
diff
changeset
|
2473 |
|
e7f9b8199545
test_bitbucket_issue_4
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
48
diff
changeset
|
2474 self.assertEqual(6, len(DoGet(_LOCAL, '/instances'))) |
|
50
8de63d56cf11
test_create_sequence
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
49
diff
changeset
|
2475 |
|
8de63d56cf11
test_create_sequence
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
49
diff
changeset
|
2476 |
|
8de63d56cf11
test_create_sequence
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
49
diff
changeset
|
2477 def test_create_sequence(self): |
|
8de63d56cf11
test_create_sequence
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
49
diff
changeset
|
2478 i = DoPost(_REMOTE, '/tools/create-dicom', |
|
8de63d56cf11
test_create_sequence
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
49
diff
changeset
|
2479 json.dumps({ |
|
8de63d56cf11
test_create_sequence
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
49
diff
changeset
|
2480 'Tags' : { |
|
8de63d56cf11
test_create_sequence
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
49
diff
changeset
|
2481 'SpecificCharacterSet': 'ISO_IR 100', # Encode using Latin1 |
|
8de63d56cf11
test_create_sequence
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
49
diff
changeset
|
2482 'PatientName': 'Jodogne^', |
|
51
264a20a0276d
test_modify_sequence
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
50
diff
changeset
|
2483 'ReferencedStudySequence': GenerateTestSequence(), |
|
50
8de63d56cf11
test_create_sequence
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
49
diff
changeset
|
2484 } |
|
8de63d56cf11
test_create_sequence
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
49
diff
changeset
|
2485 }))['ID'] |
|
8de63d56cf11
test_create_sequence
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
49
diff
changeset
|
2486 |
|
8de63d56cf11
test_create_sequence
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
49
diff
changeset
|
2487 self.assertEqual('Jodogne^', DoGet(_REMOTE, '/instances/%s/content/PatientName' % i)) |
|
8de63d56cf11
test_create_sequence
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
49
diff
changeset
|
2488 self.assertEqual('Hello^', DoGet(_REMOTE, '/instances/%s/content/ReferencedStudySequence/0/StudyDescription' % i)) |
|
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49
diff
changeset
|
2489 self.assertEqual('Toto', DoGet(_REMOTE, '/instances/%s/content/ReferencedStudySequence/0/ReferencedStudySequence/0/StudyDescription' % i)) |
|
8de63d56cf11
test_create_sequence
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parents:
49
diff
changeset
|
2490 self.assertEqual('Tata', DoGet(_REMOTE, '/instances/%s/content/ReferencedStudySequence/0/ReferencedStudySequence/1/StudyDescription' % i)) |
|
8de63d56cf11
test_create_sequence
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49
diff
changeset
|
2491 self.assertEqual(u'Sébastien^'.encode('latin-1'), |
|
8de63d56cf11
test_create_sequence
Sebastien Jodogne <s.jodogne@gmail.com>
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49
diff
changeset
|
2492 DoGet(_REMOTE, '/instances/%s/content/ReferencedStudySequence/1/StudyDescription' % i)) |
|
51
264a20a0276d
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50
diff
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|
2493 |
|
264a20a0276d
test_modify_sequence
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50
diff
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|
2494 |
|
264a20a0276d
test_modify_sequence
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
50
diff
changeset
|
2495 def test_modify_sequence(self): |
|
264a20a0276d
test_modify_sequence
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
50
diff
changeset
|
2496 i = UploadInstance(_REMOTE, 'PrivateTags.dcm')['ID'] |
|
264a20a0276d
test_modify_sequence
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
50
diff
changeset
|
2497 self.assertRaises(Exception, lambda: DoGet(_REMOTE, '/instances/%s/content/ReferencedStudySequence' % i)) |
|
264a20a0276d
test_modify_sequence
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
50
diff
changeset
|
2498 |
|
264a20a0276d
test_modify_sequence
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
50
diff
changeset
|
2499 j = DoPost(_REMOTE, '/instances/%s/modify' % i, |
|
264a20a0276d
test_modify_sequence
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
50
diff
changeset
|
2500 json.dumps({ |
|
264a20a0276d
test_modify_sequence
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
50
diff
changeset
|
2501 "Replace" : { |
|
264a20a0276d
test_modify_sequence
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
50
diff
changeset
|
2502 "PatientName" : "hello", |
|
264a20a0276d
test_modify_sequence
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
50
diff
changeset
|
2503 'ReferencedStudySequence': GenerateTestSequence(), |
|
264a20a0276d
test_modify_sequence
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
50
diff
changeset
|
2504 }, |
|
264a20a0276d
test_modify_sequence
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
50
diff
changeset
|
2505 }), |
|
264a20a0276d
test_modify_sequence
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
50
diff
changeset
|
2506 'application/json') |
|
264a20a0276d
test_modify_sequence
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
50
diff
changeset
|
2507 j = DoPost(_REMOTE, '/instances', j, 'application/dicom')['ID'] |
|
264a20a0276d
test_modify_sequence
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
50
diff
changeset
|
2508 DoDelete(_REMOTE, '/instances/%s' % i) |
|
264a20a0276d
test_modify_sequence
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
50
diff
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|
2509 |
| 52 | 2510 self.assertEqual(2, len(DoGet(_REMOTE, '/instances/%s/content/ReferencedStudySequence' % j))) |
| 2511 | |
| 2512 | |
| 2513 def test_compression(self): | |
| 2514 i = UploadInstance(_REMOTE, 'DummyCT.dcm')['ID'] | |
| 2515 | |
| 2516 data = DoGetRaw(_REMOTE, '/instances/%s/attachments/dicom-as-json/data' % i)[1] | |
| 2517 | |
| 2518 # "StorageCompression" is enabled in the Orthanc to be tested, | |
| 2519 # uncompress the data before running the test | |
| 2520 if DoGet(_REMOTE, '/instances/%s/attachments/dicom-as-json/is-compressed' % i) != 0: | |
| 2521 DoPost(_REMOTE, '/instances/%s/attachments/dicom-as-json/uncompress' % i) | |
| 2522 | |
| 2523 cs = DoGet(_REMOTE, '/statistics')['TotalDiskSize'] | |
| 2524 us = DoGet(_REMOTE, '/statistics')['TotalUncompressedSize'] | |
| 2525 size = DoGet(_REMOTE, '/instances/%s/attachments/dicom-as-json/size' % i) | |
| 2526 md5 = DoGet(_REMOTE, '/instances/%s/attachments/dicom-as-json/md5' % i) | |
| 2527 self.assertEqual(data, DoGetRaw(_REMOTE, '/instances/%s/attachments/dicom-as-json/compressed-data' % i)[1]) | |
| 2528 self.assertEqual(md5, DoGet(_REMOTE, '/instances/%s/attachments/dicom-as-json/compressed-md5' % i)) | |
| 2529 self.assertEqual(size, DoGet(_REMOTE, '/instances/%s/attachments/dicom-as-json/compressed-size' % i)) | |
| 2530 | |
| 2531 ops = DoGet(_REMOTE, '/instances/%s/attachments/dicom-as-json' % i) | |
| 2532 self.assertTrue('compress' in ops) | |
| 2533 self.assertTrue('uncompress' in ops) | |
| 2534 self.assertTrue('is-compressed' in ops) | |
| 2535 self.assertEqual(0, DoGet(_REMOTE, '/instances/%s/attachments/dicom-as-json/is-compressed' % i)) | |
| 2536 DoPost(_REMOTE, '/instances/%s/attachments/dicom-as-json/verify-md5' % i) | |
| 2537 | |
| 2538 DoPost(_REMOTE, '/instances/%s/attachments/dicom-as-json/compress' % i) | |
| 2539 DoPost(_REMOTE, '/instances/%s/attachments/dicom-as-json/verify-md5' % i) | |
| 2540 self.assertEqual(1, DoGet(_REMOTE, '/instances/%s/attachments/dicom-as-json/is-compressed' % i)) | |
| 2541 self.assertLess(cs, DoGet(_REMOTE, '/statistics')['TotalDiskSize']) | |
| 2542 self.assertEqual(us, DoGet(_REMOTE, '/statistics')['TotalUncompressedSize']) | |
| 2543 self.assertGreater(len(data), len(DoGetRaw(_REMOTE, '/instances/%s/attachments/dicom-as-json/compressed-data' % i)[1])) | |
| 2544 self.assertGreater(size, DoGet(_REMOTE, '/instances/%s/attachments/dicom-as-json/compressed-size' % i)) | |
| 2545 self.assertEqual(size, DoGet(_REMOTE, '/instances/%s/attachments/dicom-as-json/size' % i)) | |
| 2546 self.assertEqual(md5, DoGet(_REMOTE, '/instances/%s/attachments/dicom-as-json/md5' % i)) | |
| 2547 self.assertNotEqual(md5, DoGet(_REMOTE, '/instances/%s/attachments/dicom-as-json/compressed-md5' % i)) | |
| 2548 | |
| 2549 DoPost(_REMOTE, '/instances/%s/attachments/dicom-as-json/uncompress' % i) | |
| 2550 DoPost(_REMOTE, '/instances/%s/attachments/dicom-as-json/verify-md5' % i) | |
| 2551 self.assertEqual(0, DoGet(_REMOTE, '/instances/%s/attachments/dicom-as-json/is-compressed' % i)) | |
| 2552 self.assertEqual(data, DoGetRaw(_REMOTE, '/instances/%s/attachments/dicom-as-json/compressed-data' % i)[1]) | |
| 2553 self.assertEqual(size, DoGet(_REMOTE, '/instances/%s/attachments/dicom-as-json/compressed-size' % i)) | |
| 2554 self.assertEqual(size, DoGet(_REMOTE, '/instances/%s/attachments/dicom-as-json/size' % i)) | |
| 2555 self.assertEqual(md5, DoGet(_REMOTE, '/instances/%s/attachments/dicom-as-json/md5' % i)) | |
| 2556 self.assertEqual(md5, DoGet(_REMOTE, '/instances/%s/attachments/dicom-as-json/compressed-md5' % i)) | |
| 2557 self.assertEqual(cs, DoGet(_REMOTE, '/statistics')['TotalDiskSize']) | |
| 2558 self.assertEqual(us, DoGet(_REMOTE, '/statistics')['TotalUncompressedSize']) | |
| 53 | 2559 |
| 2560 | |
| 2561 def test_ordered_slices(self): | |
| 2562 i = UploadInstance(_REMOTE, 'Multiframe.dcm')['ID'] | |
| 2563 s = DoGet(_REMOTE, '/instances/%s' % i)['ParentSeries'] | |
| 2564 o = DoGet(_REMOTE, '/series/%s/ordered-slices' % s) | |
| 2565 self.assertEqual('Sequence', o['Type']) | |
| 2566 self.assertEqual(1, len(o['Dicom'])) | |
| 2567 self.assertEqual('/instances/9e05eb0a-18b6268c-e0d36085-8ddab517-3b5aec02/file', o['Dicom'][0]) | |
| 2568 self.assertEqual(76, len(o['Slices'])) | |
| 2569 for j in range(76): | |
| 2570 self.assertEqual('/instances/9e05eb0a-18b6268c-e0d36085-8ddab517-3b5aec02/frames/%d' % j, o['Slices'][j]) | |
| 2571 | |
| 68 | 2572 self.assertEqual(1, len(o['SlicesShort'])) |
| 2573 self.assertEqual('9e05eb0a-18b6268c-e0d36085-8ddab517-3b5aec02', o['SlicesShort'][0][0]) | |
| 2574 self.assertEqual(0, o['SlicesShort'][0][1]) | |
| 2575 self.assertEqual(76, o['SlicesShort'][0][2]) | |
| 2576 | |
| 53 | 2577 i = UploadInstance(_REMOTE, 'Brainix/Epi/IM-0001-0001.dcm')['ID'] |
| 2578 j = UploadInstance(_REMOTE, 'Brainix/Epi/IM-0001-0002.dcm')['ID'] | |
| 2579 k = UploadInstance(_REMOTE, 'Brainix/Epi/IM-0001-0003.dcm')['ID'] | |
| 2580 s = DoGet(_REMOTE, '/instances/%s' % i)['ParentSeries'] | |
| 2581 o = DoGet(_REMOTE, '/series/%s/ordered-slices' % s) | |
| 2582 | |
| 2583 self.assertEqual('Volume', o['Type']) | |
| 2584 self.assertEqual(3, len(o['Dicom'])) | |
| 2585 self.assertEqual(3, len(o['Slices'])) | |
| 2586 self.assertEqual('/instances/%s/file' % i, o['Dicom'][2]) | |
| 2587 self.assertEqual('/instances/%s/file' % j, o['Dicom'][1]) | |
| 2588 self.assertEqual('/instances/%s/file' % k, o['Dicom'][0]) | |
| 2589 self.assertEqual('/instances/%s/frames/0' % i, o['Slices'][2]) | |
| 2590 self.assertEqual('/instances/%s/frames/0' % j, o['Slices'][1]) | |
| 2591 self.assertEqual('/instances/%s/frames/0' % k, o['Slices'][0]) | |
| 2592 | |
| 68 | 2593 self.assertEqual(3, len(o['SlicesShort'])) |
| 2594 self.assertEqual(k, o['SlicesShort'][0][0]) | |
| 2595 self.assertEqual(0, o['SlicesShort'][0][1]) | |
| 2596 self.assertEqual(1, o['SlicesShort'][0][2]) | |
| 2597 self.assertEqual(j, o['SlicesShort'][1][0]) | |
| 2598 self.assertEqual(0, o['SlicesShort'][1][1]) | |
| 2599 self.assertEqual(1, o['SlicesShort'][1][2]) | |
| 2600 self.assertEqual(i, o['SlicesShort'][2][0]) | |
| 2601 self.assertEqual(0, o['SlicesShort'][2][1]) | |
| 2602 self.assertEqual(1, o['SlicesShort'][2][2]) | |
| 2603 | |
| 53 | 2604 i = UploadInstance(_REMOTE, 'Beaufix/IM-0001-0001.dcm')['ID'] |
| 2605 j = UploadInstance(_REMOTE, 'Beaufix/IM-0001-0002.dcm')['ID'] | |
| 2606 s = DoGet(_REMOTE, '/instances/%s' % i)['ParentSeries'] | |
| 2607 o = DoGet(_REMOTE, '/series/%s/ordered-slices' % s) | |
| 2608 | |
| 2609 self.assertEqual('Sequence', o['Type']) | |
| 2610 self.assertEqual(2, len(o['Dicom'])) | |
| 2611 self.assertEqual(2, len(o['Slices'])) | |
| 2612 self.assertEqual('/instances/%s/file' % i, o['Dicom'][0]) | |
| 2613 self.assertEqual('/instances/%s/file' % j, o['Dicom'][1]) | |
| 2614 self.assertEqual('/instances/%s/frames/0' % i, o['Slices'][0]) | |
| 2615 self.assertEqual('/instances/%s/frames/0' % j, o['Slices'][1]) | |
|
54
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test_incoming_movescu_accession
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parents:
53
diff
changeset
|
2616 |
| 68 | 2617 self.assertEqual(2, len(o['SlicesShort'])) |
| 2618 self.assertEqual(i, o['SlicesShort'][0][0]) | |
| 2619 self.assertEqual(0, o['SlicesShort'][0][1]) | |
| 2620 self.assertEqual(1, o['SlicesShort'][0][2]) | |
| 2621 self.assertEqual(j, o['SlicesShort'][1][0]) | |
| 2622 self.assertEqual(0, o['SlicesShort'][1][1]) | |
| 2623 self.assertEqual(1, o['SlicesShort'][1][2]) | |
| 2624 | |
| 2625 | |
|
54
c5f8a6b0d85e
test_incoming_movescu_accession
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parents:
53
diff
changeset
|
2626 |
|
c5f8a6b0d85e
test_incoming_movescu_accession
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parents:
53
diff
changeset
|
2627 def test_incoming_movescu_accession(self): |
|
c5f8a6b0d85e
test_incoming_movescu_accession
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parents:
53
diff
changeset
|
2628 UploadInstance(_REMOTE, 'Knee/T1/IM-0001-0001.dcm') |
|
c5f8a6b0d85e
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parents:
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diff
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|
2629 |
|
137
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parents:
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diff
changeset
|
2630 # No matching patient, so no job is created |
|
54
c5f8a6b0d85e
test_incoming_movescu_accession
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parents:
53
diff
changeset
|
2631 self.assertEqual(0, len(DoGet(_LOCAL, '/patients'))) |
|
c5f8a6b0d85e
test_incoming_movescu_accession
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parents:
53
diff
changeset
|
2632 CallMoveScu([ '--study', '-k', '0008,0052=STUDY', '-k', 'AccessionNumber=nope' ]) |
|
c5f8a6b0d85e
test_incoming_movescu_accession
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parents:
53
diff
changeset
|
2633 self.assertEqual(0, len(DoGet(_LOCAL, '/patients'))) |
|
c5f8a6b0d85e
test_incoming_movescu_accession
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parents:
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diff
changeset
|
2634 CallMoveScu([ '--study', '-k', '0008,0052=PATIENT', '-k', 'AccessionNumber=A10003245599' ]) |
|
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test_incoming_movescu_accession
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parents:
53
diff
changeset
|
2635 self.assertEqual(0, len(DoGet(_LOCAL, '/patients'))) |
|
137
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|
2636 |
|
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changeset
|
2637 # 1 Matching patient, track the job |
|
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diff
changeset
|
2638 a = set(DoGet(_REMOTE, '/jobs')) |
|
54
c5f8a6b0d85e
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diff
changeset
|
2639 CallMoveScu([ '--study', '-k', '0008,0052=STUDY', '-k', 'AccessionNumber=A10003245599' ]) |
|
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|
2640 b = set(DoGet(_REMOTE, '/jobs')) |
|
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diff
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|
2641 |
|
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changeset
|
2642 diff = list(b - a) |
|
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|
2643 self.assertEqual(1, len(diff)) |
|
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diff
changeset
|
2644 self.assertTrue(WaitJobDone(_REMOTE, diff[0])) |
|
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|
2645 |
|
54
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diff
changeset
|
2646 self.assertEqual(1, len(DoGet(_LOCAL, '/patients'))) |
|
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|
2647 |
| 55 | 2648 |
| 2649 def test_dicom_to_json(self): | |
| 2650 i = UploadInstance(_REMOTE, 'PrivateMDNTags.dcm')['ID'] | |
|
60
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|
2651 j = UploadInstance(_REMOTE, 'PrivateTags.dcm')['ID'] |
|
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|
2652 |
|
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changeset
|
2653 t = DoGet(_REMOTE, '/instances/%s/tags?simplify' % i) |
|
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changeset
|
2654 with open(GetDatabasePath('PrivateMDNTagsSimplify.json'), 'r') as f: |
|
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|
2655 self.assertTrue(CompareTags(t, json.loads(f.read()), [ |
| 123 | 2656 # Tags for compatibility with DCMTK 3.6.0 |
| 2657 'RETIRED_OtherPatientIDs', | |
| 2658 'OtherPatientIDs', | |
| 2659 'ACR_NEMA_2C_VariablePixelDataGroupLength', | |
|
80
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|
2660 ])) |
| 55 | 2661 |
| 2662 t = DoGet(_REMOTE, '/instances/%s/tags' % i) | |
| 2663 with open(GetDatabasePath('PrivateMDNTagsFull.json'), 'r') as f: | |
|
87
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diff
changeset
|
2664 self.assertTrue(CompareTags(t, json.loads(f.read()), [ |
|
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|
2665 ])) |
| 55 | 2666 |
|
60
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changeset
|
2667 t = DoGet(_REMOTE, '/instances/%s/tags?simplify' % j) |
|
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changeset
|
2668 with open(GetDatabasePath('PrivateTagsSimplify.json'), 'r') as f: |
|
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|
2669 self.assertTrue(CompareTags(t, json.loads(f.read()), [ |
|
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|
2670 ])) |
|
60
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|
2671 |
|
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diff
changeset
|
2672 t = DoGet(_REMOTE, '/instances/%s/tags' % j) |
|
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changeset
|
2673 with open(GetDatabasePath('PrivateTagsFull.json'), 'r') as f: |
|
cd3c7f70f139
test backward compatibility with Orthanc 0.9.4
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
59
diff
changeset
|
2674 a = json.loads(f.read()) |
|
65
09fc27e0899a
patch for testing windows builds
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
64
diff
changeset
|
2675 aa = json.dumps(a).replace('2e+022', '2e+22') |
|
09fc27e0899a
patch for testing windows builds
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
64
diff
changeset
|
2676 tt = json.dumps(t).replace('2e+022', '2e+22') |
|
09fc27e0899a
patch for testing windows builds
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
64
diff
changeset
|
2677 self.assertEqual(aa, tt) |
| 57 | 2678 |
| 2679 | |
| 2680 def test_batch_archive(self): | |
| 2681 UploadInstance(_REMOTE, 'Knee/T1/IM-0001-0001.dcm') | |
| 2682 UploadInstance(_REMOTE, 'Knee/T1/IM-0001-0002.dcm') | |
| 2683 UploadInstance(_REMOTE, 'Knee/T2/IM-0001-0001.dcm') | |
| 2684 UploadInstance(_REMOTE, 'Knee/T2/IM-0001-0002.dcm') | |
| 2685 UploadInstance(_REMOTE, 'Brainix/Epi/IM-0001-0001.dcm') | |
| 2686 UploadInstance(_REMOTE, 'Brainix/Epi/IM-0001-0002.dcm') | |
| 2687 UploadInstance(_REMOTE, 'Brainix/Flair/IM-0001-0001.dcm') | |
| 2688 UploadInstance(_REMOTE, 'Brainix/Flair/IM-0001-0002.dcm') | |
| 2689 | |
| 2690 s = DoPost(_REMOTE, '/tools/create-archive', [ ]) | |
| 2691 z = zipfile.ZipFile(StringIO(s), "r") | |
| 2692 self.assertEqual(0, len(z.namelist())) | |
| 2693 | |
| 2694 # One patient | |
| 2695 s = DoPost(_REMOTE, '/tools/create-archive', [ 'ca29faea-b6a0e17f-067743a1-8b778011-a48b2a17' ]) | |
| 2696 z = zipfile.ZipFile(StringIO(s), "r") | |
| 2697 self.assertEqual(4, len(z.namelist())) | |
| 2698 | |
| 2699 # One patient + twice its study + one series from other patient | |
| 2700 s = DoPost(_REMOTE, '/tools/create-archive', [ | |
| 2701 'ca29faea-b6a0e17f-067743a1-8b778011-a48b2a17', | |
| 2702 '0a9b3153-2512774b-2d9580de-1fc3dcf6-3bd83918', | |
| 2703 '1e2c125c-411b8e86-3f4fe68e-a7584dd3-c6da78f0' | |
| 2704 ]) | |
| 2705 z = zipfile.ZipFile(StringIO(s), "r") | |
| 2706 self.assertEqual(6, len(z.namelist())) | |
| 2707 | |
| 2708 # One patient + one series + one instance | |
| 2709 s = DoPost(_REMOTE, '/tools/create-archive', [ | |
| 2710 'ca29faea-b6a0e17f-067743a1-8b778011-a48b2a17', | |
| 2711 '1e2c125c-411b8e86-3f4fe68e-a7584dd3-c6da78f0', | |
| 2712 '1d429ccb-bdcc78a1-7d129d6a-ba4966ed-fe4dbd87' | |
| 2713 ]) | |
| 2714 z = zipfile.ZipFile(StringIO(s), "r") | |
| 2715 self.assertEqual(7, len(z.namelist())) | |
|
59
84378ada15ab
test_decode_brainix_as_jpeg
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
58
diff
changeset
|
2716 |
|
84378ada15ab
test_decode_brainix_as_jpeg
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
58
diff
changeset
|
2717 |
|
84378ada15ab
test_decode_brainix_as_jpeg
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
58
diff
changeset
|
2718 def test_decode_brainix_as_jpeg(self): |
|
84378ada15ab
test_decode_brainix_as_jpeg
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
58
diff
changeset
|
2719 i = UploadInstance(_REMOTE, 'Brainix/Epi/IM-0001-0001.dcm')['ID'] |
|
84378ada15ab
test_decode_brainix_as_jpeg
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
58
diff
changeset
|
2720 |
|
84378ada15ab
test_decode_brainix_as_jpeg
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
58
diff
changeset
|
2721 j = GetImage(_REMOTE, '/instances/%s/preview' % i) |
|
84378ada15ab
test_decode_brainix_as_jpeg
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
58
diff
changeset
|
2722 self.assertEqual('PNG', j.format) |
|
84378ada15ab
test_decode_brainix_as_jpeg
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
58
diff
changeset
|
2723 self.assertEqual(j.size[0], 256) |
|
84378ada15ab
test_decode_brainix_as_jpeg
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
58
diff
changeset
|
2724 self.assertEqual(j.size[1], 256) |
|
84378ada15ab
test_decode_brainix_as_jpeg
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
58
diff
changeset
|
2725 |
|
84378ada15ab
test_decode_brainix_as_jpeg
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
58
diff
changeset
|
2726 j = GetImage(_REMOTE, '/instances/%s/preview' % i, headers = { 'Accept' : '*/*' }) |
|
84378ada15ab
test_decode_brainix_as_jpeg
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
58
diff
changeset
|
2727 self.assertEqual('PNG', j.format) |
|
84378ada15ab
test_decode_brainix_as_jpeg
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
58
diff
changeset
|
2728 |
|
84378ada15ab
test_decode_brainix_as_jpeg
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
58
diff
changeset
|
2729 j = GetImage(_REMOTE, '/instances/%s/preview' % i, headers = { 'Accept' : 'image/*' }) |
|
84378ada15ab
test_decode_brainix_as_jpeg
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
58
diff
changeset
|
2730 self.assertEqual('PNG', j.format) |
|
84378ada15ab
test_decode_brainix_as_jpeg
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
58
diff
changeset
|
2731 |
|
84378ada15ab
test_decode_brainix_as_jpeg
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
58
diff
changeset
|
2732 j = GetImage(_REMOTE, '/instances/%s/preview' % i, headers = { 'Accept' : 'image/png' }) |
|
84378ada15ab
test_decode_brainix_as_jpeg
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
58
diff
changeset
|
2733 self.assertEqual('PNG', j.format) |
|
84378ada15ab
test_decode_brainix_as_jpeg
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
58
diff
changeset
|
2734 |
|
84378ada15ab
test_decode_brainix_as_jpeg
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
58
diff
changeset
|
2735 j = GetImage(_REMOTE, '/instances/%s/preview' % i, headers = { 'Accept' : 'image/jpeg' }) |
|
84378ada15ab
test_decode_brainix_as_jpeg
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
58
diff
changeset
|
2736 self.assertEqual('JPEG', j.format) |
|
84378ada15ab
test_decode_brainix_as_jpeg
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
58
diff
changeset
|
2737 self.assertEqual(j.size[0], 256) |
|
84378ada15ab
test_decode_brainix_as_jpeg
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
58
diff
changeset
|
2738 self.assertEqual(j.size[1], 256) |
|
84378ada15ab
test_decode_brainix_as_jpeg
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
58
diff
changeset
|
2739 |
|
84378ada15ab
test_decode_brainix_as_jpeg
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
58
diff
changeset
|
2740 a = len(DoGet(_REMOTE, '/instances/%s/preview?quality=50' % i, headers = { 'Accept' : 'image/jpeg' })) |
|
84378ada15ab
test_decode_brainix_as_jpeg
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
58
diff
changeset
|
2741 b = len(DoGet(_REMOTE, '/instances/%s/preview' % i, headers = { 'Accept' : 'image/jpeg' })) |
|
84378ada15ab
test_decode_brainix_as_jpeg
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
58
diff
changeset
|
2742 self.assertLess(a, b) |
|
84378ada15ab
test_decode_brainix_as_jpeg
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
58
diff
changeset
|
2743 |
|
84378ada15ab
test_decode_brainix_as_jpeg
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
58
diff
changeset
|
2744 j = GetImage(_REMOTE, '/instances/%s/image-uint8' % i, headers = { 'Accept' : 'image/jpeg' }) |
|
84378ada15ab
test_decode_brainix_as_jpeg
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
58
diff
changeset
|
2745 self.assertEqual('JPEG', j.format) |
|
84378ada15ab
test_decode_brainix_as_jpeg
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
58
diff
changeset
|
2746 |
|
84378ada15ab
test_decode_brainix_as_jpeg
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
58
diff
changeset
|
2747 # 16bit encoding is not supported with JPEG |
|
84378ada15ab
test_decode_brainix_as_jpeg
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
58
diff
changeset
|
2748 self.assertRaises(Exception, lambda: GetImage(_REMOTE, '/instances/%s/image-uint16' % i, headers = { 'Accept' : 'image/jpeg' })) |
|
84378ada15ab
test_decode_brainix_as_jpeg
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
58
diff
changeset
|
2749 self.assertRaises(Exception, lambda: GetImage(_REMOTE, '/instances/%s/image-int16' % i, headers = { 'Accept' : 'image/jpeg' })) |
|
84378ada15ab
test_decode_brainix_as_jpeg
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
58
diff
changeset
|
2750 |
|
84378ada15ab
test_decode_brainix_as_jpeg
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
58
diff
changeset
|
2751 # No matching content type |
|
84378ada15ab
test_decode_brainix_as_jpeg
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
58
diff
changeset
|
2752 self.assertRaises(Exception, lambda: GetImage(_REMOTE, '/instances/%s/preview' % i, headers = { 'Accept' : 'application/pdf' })) |
|
69
83fd88230097
test_media_encodings
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
68
diff
changeset
|
2753 |
|
83fd88230097
test_media_encodings
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
68
diff
changeset
|
2754 |
|
83fd88230097
test_media_encodings
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
68
diff
changeset
|
2755 |
|
83fd88230097
test_media_encodings
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
68
diff
changeset
|
2756 def test_media_encodings(self): |
|
83fd88230097
test_media_encodings
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
68
diff
changeset
|
2757 ascii = UploadInstance(_REMOTE, 'Knee/T1/IM-0001-0001.dcm')['ID'] |
|
83fd88230097
test_media_encodings
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
68
diff
changeset
|
2758 latin1 = UploadInstance(_REMOTE, 'Brainix/Epi/IM-0001-0001.dcm')['ID'] |
|
83fd88230097
test_media_encodings
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
68
diff
changeset
|
2759 latin2 = UploadInstance(_REMOTE, 'MarekLatin2.dcm')['ID'] |
|
83fd88230097
test_media_encodings
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
68
diff
changeset
|
2760 |
|
83fd88230097
test_media_encodings
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
68
diff
changeset
|
2761 tmp = DoPost(_REMOTE, '/tools/create-media', [ascii,latin1,latin2]) |
|
83fd88230097
test_media_encodings
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
68
diff
changeset
|
2762 z = zipfile.ZipFile(StringIO(tmp), "r") |
|
83fd88230097
test_media_encodings
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
68
diff
changeset
|
2763 |
|
83fd88230097
test_media_encodings
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
68
diff
changeset
|
2764 self.assertEqual(4, len(z.namelist())) |
|
83fd88230097
test_media_encodings
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
68
diff
changeset
|
2765 self.assertTrue('IMAGES/IM0' in z.namelist()) |
|
83fd88230097
test_media_encodings
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
68
diff
changeset
|
2766 self.assertTrue('IMAGES/IM1' in z.namelist()) |
|
83fd88230097
test_media_encodings
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
68
diff
changeset
|
2767 self.assertTrue('IMAGES/IM2' in z.namelist()) |
|
83fd88230097
test_media_encodings
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
68
diff
changeset
|
2768 self.assertTrue('DICOMDIR' in z.namelist()) |
|
83fd88230097
test_media_encodings
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
68
diff
changeset
|
2769 |
|
83fd88230097
test_media_encodings
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
68
diff
changeset
|
2770 try: |
|
83fd88230097
test_media_encodings
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
68
diff
changeset
|
2771 os.remove('/tmp/DICOMDIR') |
|
83fd88230097
test_media_encodings
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
68
diff
changeset
|
2772 except: |
|
83fd88230097
test_media_encodings
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
68
diff
changeset
|
2773 # The file does not exist |
|
83fd88230097
test_media_encodings
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
68
diff
changeset
|
2774 pass |
|
83fd88230097
test_media_encodings
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
68
diff
changeset
|
2775 |
|
83fd88230097
test_media_encodings
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
68
diff
changeset
|
2776 z.extract('DICOMDIR', '/tmp') |
|
83fd88230097
test_media_encodings
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
68
diff
changeset
|
2777 a = subprocess.check_output([ FindExecutable('dciodvfy'), '/tmp/DICOMDIR' ], |
|
83fd88230097
test_media_encodings
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
68
diff
changeset
|
2778 stderr = subprocess.STDOUT).split('\n') |
|
83fd88230097
test_media_encodings
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
68
diff
changeset
|
2779 |
|
83fd88230097
test_media_encodings
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
68
diff
changeset
|
2780 a = subprocess.check_output([ FindExecutable('dcentvfy'), '/tmp/DICOMDIR' ], |
|
83fd88230097
test_media_encodings
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
68
diff
changeset
|
2781 stderr = subprocess.STDOUT).split('\n') |
|
83fd88230097
test_media_encodings
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
68
diff
changeset
|
2782 self.assertEqual(1, len(a)) |
|
83fd88230097
test_media_encodings
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
68
diff
changeset
|
2783 self.assertEqual('', a[0]) |
|
83fd88230097
test_media_encodings
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
68
diff
changeset
|
2784 |
|
83fd88230097
test_media_encodings
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
68
diff
changeset
|
2785 a = subprocess.check_output([ FindExecutable('dcm2xml'), '/tmp/DICOMDIR' ]) |
|
83fd88230097
test_media_encodings
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
68
diff
changeset
|
2786 self.assertTrue(re.search('1.3.46.670589.11.17521.5.0.3124.2008081908590448738', a) != None) |
|
83fd88230097
test_media_encodings
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
68
diff
changeset
|
2787 self.assertTrue(re.search('1.3.46.670589.11.0.0.11.4.2.0.8743.5.5396.2006120114333648576', a) != None) |
|
83fd88230097
test_media_encodings
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
68
diff
changeset
|
2788 self.assertTrue(re.search('1.2.826.0.1.3680043.2.1569.1.4.323026757.1700.1399452091.57', a) != None) |
|
83fd88230097
test_media_encodings
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
68
diff
changeset
|
2789 |
|
83fd88230097
test_media_encodings
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
68
diff
changeset
|
2790 os.remove('/tmp/DICOMDIR') |
|
71
48740070cbf1
TDD: tests for ongoing development of counter tags in C-Find
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
70
diff
changeset
|
2791 |
|
48740070cbf1
TDD: tests for ongoing development of counter tags in C-Find
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
70
diff
changeset
|
2792 |
|
48740070cbf1
TDD: tests for ongoing development of counter tags in C-Find
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
70
diff
changeset
|
2793 def test_findscu_counters(self): |
|
48740070cbf1
TDD: tests for ongoing development of counter tags in C-Find
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
70
diff
changeset
|
2794 UploadInstance(_REMOTE, 'Comunix/Ct/IM-0001-0001.dcm') |
|
48740070cbf1
TDD: tests for ongoing development of counter tags in C-Find
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
70
diff
changeset
|
2795 UploadInstance(_REMOTE, 'Comunix/Pet/IM-0001-0001.dcm') |
|
48740070cbf1
TDD: tests for ongoing development of counter tags in C-Find
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
70
diff
changeset
|
2796 UploadInstance(_REMOTE, 'Comunix/Pet/IM-0001-0002.dcm') |
|
48740070cbf1
TDD: tests for ongoing development of counter tags in C-Find
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
70
diff
changeset
|
2797 |
|
48740070cbf1
TDD: tests for ongoing development of counter tags in C-Find
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
70
diff
changeset
|
2798 i = CallFindScu([ '-k', '0008,0052=PATIENT', '-k', 'NumberOfPatientRelatedStudies' ]) |
|
48740070cbf1
TDD: tests for ongoing development of counter tags in C-Find
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
70
diff
changeset
|
2799 s = re.findall('\(0020,1200\).*?\[(.*?)\]', i) |
|
48740070cbf1
TDD: tests for ongoing development of counter tags in C-Find
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
70
diff
changeset
|
2800 self.assertEqual(1, len(s)) |
|
48740070cbf1
TDD: tests for ongoing development of counter tags in C-Find
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
70
diff
changeset
|
2801 self.assertTrue('1 ' in s) |
|
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|
2802 |
|
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|
2803 i = CallFindScu([ '-k', '0008,0052=PATIENT', '-k', 'NumberOfPatientRelatedSeries' ]) |
|
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|
2804 s = re.findall('\(0020,1202\).*?\[(.*?)\]', i) |
|
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|
2805 self.assertEqual(1, len(s)) |
|
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|
2806 self.assertTrue('2 ' in s) |
|
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changeset
|
2807 |
|
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|
2808 i = CallFindScu([ '-k', '0008,0052=PATIENT', '-k', 'NumberOfPatientRelatedInstances' ]) |
|
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|
2809 s = re.findall('\(0020,1204\).*?\[(.*?)\]', i) |
|
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changeset
|
2810 self.assertEqual(1, len(s)) |
|
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changeset
|
2811 self.assertTrue('3 ' in s) |
|
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changeset
|
2812 |
|
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diff
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|
2813 i = CallFindScu([ '-k', '0008,0052=STUDY', '-k', 'NumberOfStudyRelatedSeries' ]) |
|
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|
2814 s = re.findall('\(0020,1206\).*?\[(.*?)\]', i) |
|
48740070cbf1
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diff
changeset
|
2815 self.assertEqual(1, len(s)) |
|
48740070cbf1
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diff
changeset
|
2816 self.assertTrue('2 ' in s) |
|
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diff
changeset
|
2817 |
|
48740070cbf1
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diff
changeset
|
2818 i = CallFindScu([ '-k', '0008,0052=STUDY', '-k', 'NumberOfStudyRelatedInstances' ]) |
|
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diff
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|
2819 s = re.findall('\(0020,1208\).*?\[(.*?)\]', i) |
|
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|
2820 self.assertEqual(1, len(s)) |
|
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parents:
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diff
changeset
|
2821 self.assertTrue('3 ' in s) |
|
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diff
changeset
|
2822 |
|
48740070cbf1
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diff
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|
2823 i = CallFindScu([ '-k', '0008,0052=SERIES', '-k', 'NumberOfSeriesRelatedInstances' ]) |
|
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diff
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|
2824 s = re.findall('\(0020,1209\).*?\[(.*?)\]', i) |
|
48740070cbf1
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diff
changeset
|
2825 self.assertEqual(2, len(s)) |
|
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diff
changeset
|
2826 self.assertTrue('1 ' in s) |
|
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parents:
70
diff
changeset
|
2827 self.assertTrue('2 ' in s) |
|
48740070cbf1
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parents:
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diff
changeset
|
2828 |
|
48740070cbf1
TDD: tests for ongoing development of counter tags in C-Find
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parents:
70
diff
changeset
|
2829 i = CallFindScu([ '-k', '0008,0052=STUDY', '-k', 'ModalitiesInStudy' ]) |
|
48740070cbf1
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|
2830 s = re.findall('\(0008,0061\).*?\[(.*?)\]', i) |
|
48740070cbf1
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diff
changeset
|
2831 self.assertEqual(1, len(s)) |
|
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parents:
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diff
changeset
|
2832 t = map(lambda x: x.strip(), s[0].split('\\')) |
|
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changeset
|
2833 self.assertTrue('PT' in t) |
|
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changeset
|
2834 self.assertTrue('CT' in t) |
|
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|
2835 |
|
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diff
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|
2836 i = CallFindScu([ '-k', '0008,0052=STUDY', '-k', 'SOPClassesInStudy' ]) |
|
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|
2837 s = re.findall('\(0008,0062\).*?\[(.*?)\]', i) |
|
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|
2838 self.assertEqual(1, len(s)) |
|
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parents:
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diff
changeset
|
2839 t = map(lambda x: x.strip(), s[0].split('\\')) |
|
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|
2840 self.assertTrue('1.2.840.10008.5.1.4.1.1.2' in t) |
|
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|
2841 self.assertTrue('1.2.840.10008.5.1.4.1.1.128' in t) |
|
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|
2842 |
|
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|
2843 |
|
78
b89af51797ff
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diff
changeset
|
2844 def test_decode_transfer_syntax(self): |
|
b89af51797ff
test_decode_transfer_syntax
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parents:
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diff
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|
2845 def Check(t, md5): |
|
b89af51797ff
test_decode_transfer_syntax
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74
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|
2846 i = UploadInstance(_REMOTE, 'TransferSyntaxes/%s.dcm' % t)['ID'] |
|
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|
2847 |
|
89
74b7b9aed5f8
test TransferSyntax metadata
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87
diff
changeset
|
2848 if t != '1.2.840.10008.1.2': # This file has no meta header |
|
74b7b9aed5f8
test TransferSyntax metadata
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diff
changeset
|
2849 transferSyntax = DoGet(_REMOTE, '/instances/%s/metadata/TransferSyntax' % i) |
|
74b7b9aed5f8
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diff
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|
2850 self.assertEqual(t, transferSyntax) |
|
74b7b9aed5f8
test TransferSyntax metadata
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|
2851 |
|
78
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|
2852 if md5 == None: |
|
b89af51797ff
test_decode_transfer_syntax
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diff
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|
2853 self.assertRaises(Exception, lambda: DoGet(_REMOTE, '/instances/%s/preview' % i)) |
|
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|
2854 else: |
|
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74
diff
changeset
|
2855 m = ComputeMD5(DoGet(_REMOTE, '/instances/%s/preview' % i)) |
|
b89af51797ff
test_decode_transfer_syntax
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parents:
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diff
changeset
|
2856 self.assertEqual(m, md5) |
|
b89af51797ff
test_decode_transfer_syntax
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
74
diff
changeset
|
2857 |
|
b89af51797ff
test_decode_transfer_syntax
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
74
diff
changeset
|
2858 Check('1.2.840.10008.1.2.1', 'fae08d5415c4c0cd2cdbae4522408631') |
|
b89af51797ff
test_decode_transfer_syntax
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74
diff
changeset
|
2859 Check('1.2.840.10008.1.2.2', 'f3d9784768b8feb54d6a50b6d5c37682') |
|
b89af51797ff
test_decode_transfer_syntax
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parents:
74
diff
changeset
|
2860 Check('1.2.840.10008.1.2.4.50', '496326046974eea718dbc16b997c646b') |
|
b89af51797ff
test_decode_transfer_syntax
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
74
diff
changeset
|
2861 Check('1.2.840.10008.1.2.4.51', 'ccbe75909fe5c9f7361b48416a53fc41') |
|
b89af51797ff
test_decode_transfer_syntax
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parents:
74
diff
changeset
|
2862 Check('1.2.840.10008.1.2.4.57', '7bbefe11d976b1be4e568915c6a82fc3') |
|
b89af51797ff
test_decode_transfer_syntax
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parents:
74
diff
changeset
|
2863 Check('1.2.840.10008.1.2.4.70', '7132cfbc457305b04b59787030c785d2') |
|
b89af51797ff
test_decode_transfer_syntax
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
74
diff
changeset
|
2864 Check('1.2.840.10008.1.2.4.80', '6ff51ae525d362e0d04f550a64075a0e') |
|
b89af51797ff
test_decode_transfer_syntax
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74
diff
changeset
|
2865 Check('1.2.840.10008.1.2.4.81', '801579ae7cbf28e604ea74f2c99fa2ca') |
|
b89af51797ff
test_decode_transfer_syntax
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parents:
74
diff
changeset
|
2866 Check('1.2.840.10008.1.2.5', '6ff51ae525d362e0d04f550a64075a0e') # RLE, supported since Orthanc 1.0.1 |
|
b89af51797ff
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74
diff
changeset
|
2867 Check('1.2.840.10008.1.2', 'd54aed9f67a100984b42942cc2e9939b') |
|
b89af51797ff
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74
diff
changeset
|
2868 Check('1.2.840.10008.1.2.4.90', None) # JPEG-2000 image, not supported |
|
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74
diff
changeset
|
2869 Check('1.2.840.10008.1.2.4.91', None) # JPEG-2000 image, not supported |
| 79 | 2870 |
| 2871 | |
| 2872 def test_raw_frame(self): | |
| 2873 s = UploadInstance(_REMOTE, 'Issue22.dcm')['ID'] | |
| 2874 self.assertEqual(24, len(DoGet(_REMOTE, '/instances/%s/frames' % s))) | |
| 2875 a = DoGet(_REMOTE, '/instances/%s/frames/0/raw' % s) | |
| 2876 self.assertEqual(512 * 512 * 2, len(a)) | |
| 2877 self.assertEqual(512 * 512 * 2, len(DoGet(_REMOTE, '/instances/%s/frames/23/raw' % s))) | |
| 2878 self.assertRaises(Exception, lambda: DoGet(_REMOTE, '/instances/%s/frames/24/raw' % s)) | |
| 2879 self.assertEqual('1914287dc4d958eca21fdaacfb3482fa', ComputeMD5(a)) | |
| 2880 | |
| 2881 s = UploadInstance(_REMOTE, 'Multiframe.dcm')['ID'] | |
| 2882 self.assertEqual(76, len(DoGet(_REMOTE, '/instances/%s/frames' % s))) | |
| 2883 self.assertEqual(186274, len(DoGet(_REMOTE, '/instances/%s/frames/0/raw' % s))) | |
| 2884 self.assertEqual(189424, len(DoGet(_REMOTE, '/instances/%s/frames/75/raw' % s))) | |
| 2885 self.assertRaises(Exception, lambda: DoGet(_REMOTE, '/instances/%s/frames/76/raw' % s)) | |
| 2886 im = GetImage(_REMOTE, '/instances/%s/frames/0/raw' % s) | |
| 2887 self.assertEqual("L", im.mode) | |
| 2888 self.assertEqual(512, im.size[0]) | |
| 2889 self.assertEqual(512, im.size[1]) | |
| 2890 | |
| 2891 # Test an image with 2 JPEG frames spread over multiple fragments | |
| 2892 s = UploadInstance(_REMOTE, 'LenaTwiceWithFragments.dcm')['ID'] | |
| 2893 self.assertEqual(2, len(DoGet(_REMOTE, '/instances/%s/frames' % s))) | |
| 2894 a = DoGet(_REMOTE, '/instances/%s/frames/0/raw' % s) | |
| 2895 b = DoGet(_REMOTE, '/instances/%s/frames/1/raw' % s) | |
| 2896 self.assertEqual(69214, len(a)) | |
| 2897 self.assertEqual(ComputeMD5(a), ComputeMD5(b)) | |
| 2898 self.assertRaises(Exception, lambda: DoGet(_REMOTE, '/instances/%s/frames/2/raw' % s)) | |
| 2899 im = GetImage(_REMOTE, '/instances/%s/frames/0/raw' % s) | |
| 2900 self.assertEqual("RGB", im.mode) | |
| 2901 self.assertEqual(512, im.size[0]) | |
| 2902 self.assertEqual(512, im.size[1]) | |
| 2903 im = GetImage(_REMOTE, '/instances/%s/frames/0/preview' % s) | |
| 2904 self.assertEqual("RGB", im.mode) | |
| 2905 self.assertEqual(512, im.size[0]) | |
| 2906 self.assertEqual(512, im.size[1]) | |
| 81 | 2907 |
| 2908 | |
| 2909 | |
| 2910 def test_rest_movescu(self): | |
| 2911 self.assertEqual(0, len(DoGet(_REMOTE, '/patients'))) | |
| 2912 | |
| 2913 # Upload 4 instances | |
| 2914 UploadInstance(_REMOTE, 'Brainix/Flair/IM-0001-0001.dcm') | |
| 2915 UploadInstance(_REMOTE, 'Brainix/Flair/IM-0001-0002.dcm') | |
| 2916 UploadInstance(_REMOTE, 'Brainix/Epi/IM-0001-0001.dcm') | |
| 2917 UploadInstance(_REMOTE, 'Knee/T2/IM-0001-0001.dcm') | |
| 2918 | |
| 2919 self.assertEqual(2, len(DoGet(_REMOTE, '/patients'))) | |
| 2920 for p in DoGet(_REMOTE, '/patients'): | |
| 2921 DoPost(_REMOTE, '/modalities/orthanctest/store', p) | |
| 2922 DoDelete(_REMOTE, '/patients/%s' % p) | |
| 2923 | |
| 2924 self.assertEqual(0, len(DoGet(_REMOTE, '/patients'))) | |
| 2925 | |
| 2926 # Upload instance Brainix/Flair/IM-0001-0001.dcm | |
| 2927 DoPost(_REMOTE, '/modalities/orthanctest/move', { 'Level' : 'Instance', | |
| 2928 'Resources' : [ | |
| 2929 { | |
| 2930 'StudyInstanceUID' : '2.16.840.1.113669.632.20.1211.10000357775', | |
| 2931 'SeriesInstanceUID' : '1.3.46.670589.11.0.0.11.4.2.0.8743.5.5396.2006120114285654497', | |
| 2932 'SOPInstanceUID' : '1.3.46.670589.11.0.0.11.4.2.0.8743.5.5396.2006120114314079549', | |
| 2933 } | |
| 2934 ]}) | |
| 2935 | |
| 2936 # Upload series Brainix/Flair/* | |
| 2937 self.assertEqual(1, len(DoGet(_REMOTE, '/patients'))) | |
| 2938 self.assertEqual(1, len(DoGet(_REMOTE, '/studies'))) | |
| 2939 self.assertEqual(1, len(DoGet(_REMOTE, '/series'))) | |
| 2940 self.assertEqual(1, len(DoGet(_REMOTE, '/instances'))) | |
| 2941 | |
| 2942 DoPost(_REMOTE, '/modalities/orthanctest/move', { 'Level' : 'Series', | |
| 2943 'Resources' : [ | |
| 2944 { | |
| 2945 'StudyInstanceUID' : '2.16.840.1.113669.632.20.1211.10000357775', | |
| 2946 'SeriesInstanceUID' : '1.3.46.670589.11.0.0.11.4.2.0.8743.5.5396.2006120114285654497', | |
| 2947 } | |
| 2948 ]}) | |
| 2949 self.assertEqual(1, len(DoGet(_REMOTE, '/patients'))) | |
| 2950 self.assertEqual(1, len(DoGet(_REMOTE, '/studies'))) | |
| 2951 self.assertEqual(1, len(DoGet(_REMOTE, '/series'))) | |
| 2952 self.assertEqual(2, len(DoGet(_REMOTE, '/instances'))) | |
| 2953 | |
| 2954 # Upload series Brainix/Epi/* | |
| 2955 DoPost(_REMOTE, '/modalities/orthanctest/move', { 'Level' : 'Series', | |
| 2956 'Resources' : [ | |
| 2957 { | |
| 2958 'StudyInstanceUID' : '2.16.840.1.113669.632.20.1211.10000357775', | |
| 2959 'SeriesInstanceUID' : '1.3.46.670589.11.0.0.11.4.2.0.8743.5.5396.2006120114314125550', | |
| 2960 } | |
| 2961 ]}) | |
| 2962 self.assertEqual(1, len(DoGet(_REMOTE, '/patients'))) | |
| 2963 self.assertEqual(1, len(DoGet(_REMOTE, '/studies'))) | |
| 2964 self.assertEqual(2, len(DoGet(_REMOTE, '/series'))) | |
| 2965 self.assertEqual(3, len(DoGet(_REMOTE, '/instances'))) | |
| 2966 | |
| 2967 # Upload study Knee/* | |
| 2968 DoPost(_REMOTE, '/modalities/orthanctest/move', { 'Level' : 'Study', | |
| 2969 'Resources' : [ | |
| 2970 { | |
| 2971 'StudyInstanceUID' : '2.16.840.1.113669.632.20.121711.10000160881', | |
| 2972 } | |
| 2973 ]}) | |
| 2974 self.assertEqual(2, len(DoGet(_REMOTE, '/patients'))) | |
| 2975 self.assertEqual(2, len(DoGet(_REMOTE, '/studies'))) | |
| 2976 self.assertEqual(3, len(DoGet(_REMOTE, '/series'))) | |
| 2977 self.assertEqual(4, len(DoGet(_REMOTE, '/instances'))) | |
| 2978 | |
| 2979 # Reset | |
| 2980 for p in DoGet(_REMOTE, '/patients'): | |
| 2981 DoDelete(_REMOTE, '/patients/%s' % p) | |
| 2982 | |
| 2983 self.assertEqual(0, len(DoGet(_REMOTE, '/patients'))) | |
| 2984 | |
| 2985 | |
| 2986 # Upload all at once | |
| 2987 DoPost(_REMOTE, '/modalities/orthanctest/move', { 'Level' : 'Study', | |
| 2988 'Resources' : [ | |
| 2989 { | |
| 2990 'StudyInstanceUID' : '2.16.840.1.113669.632.20.121711.10000160881', | |
| 2991 }, | |
| 2992 { | |
| 2993 'StudyInstanceUID' : '2.16.840.1.113669.632.20.1211.10000357775', | |
| 2994 } | |
| 2995 ]}) | |
| 2996 self.assertEqual(2, len(DoGet(_REMOTE, '/patients'))) | |
| 2997 self.assertEqual(2, len(DoGet(_REMOTE, '/studies'))) | |
| 2998 self.assertEqual(3, len(DoGet(_REMOTE, '/series'))) | |
| 2999 self.assertEqual(4, len(DoGet(_REMOTE, '/instances'))) | |
| 3000 | |
|
86
0401ef51f5c1
test_reconstruct_json
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
83
diff
changeset
|
3001 |
|
0401ef51f5c1
test_reconstruct_json
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
83
diff
changeset
|
3002 |
|
0401ef51f5c1
test_reconstruct_json
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
83
diff
changeset
|
3003 def test_reconstruct_json(self): |
|
0401ef51f5c1
test_reconstruct_json
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
83
diff
changeset
|
3004 self.assertEqual(0, len(DoGet(_REMOTE, '/patients'))) |
|
0401ef51f5c1
test_reconstruct_json
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
83
diff
changeset
|
3005 |
|
0401ef51f5c1
test_reconstruct_json
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
83
diff
changeset
|
3006 instance = UploadInstance(_REMOTE, 'DummyCT.dcm')['ID'] |
|
0401ef51f5c1
test_reconstruct_json
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
83
diff
changeset
|
3007 first = DoGet(_REMOTE, '/instances/%s/tags' % instance) |
|
0401ef51f5c1
test_reconstruct_json
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
83
diff
changeset
|
3008 |
|
0401ef51f5c1
test_reconstruct_json
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
83
diff
changeset
|
3009 self.assertEqual('TWINOW', first['0008,1010']['Value']) |
|
0401ef51f5c1
test_reconstruct_json
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
83
diff
changeset
|
3010 self.assertEqual(2, len(DoGet(_REMOTE, '/instances/%s/attachments' % instance))) |
|
0401ef51f5c1
test_reconstruct_json
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
83
diff
changeset
|
3011 |
|
0401ef51f5c1
test_reconstruct_json
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
83
diff
changeset
|
3012 # Cannot delete the "DICOM" attachment |
|
0401ef51f5c1
test_reconstruct_json
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
83
diff
changeset
|
3013 self.assertRaises(Exception, lambda: DoDelete(_REMOTE, '/instances/%s/attachments/dicom' % instance)) |
|
0401ef51f5c1
test_reconstruct_json
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
83
diff
changeset
|
3014 |
|
0401ef51f5c1
test_reconstruct_json
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
83
diff
changeset
|
3015 # Can delete the "DICOM as JSON" attachment |
|
0401ef51f5c1
test_reconstruct_json
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
83
diff
changeset
|
3016 r = DoDelete(_REMOTE, '/instances/%s/attachments/dicom-as-json' % instance) |
|
0401ef51f5c1
test_reconstruct_json
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
83
diff
changeset
|
3017 self.assertTrue(type(r) is dict and len(r) == 0) |
|
0401ef51f5c1
test_reconstruct_json
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
83
diff
changeset
|
3018 |
|
0401ef51f5c1
test_reconstruct_json
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
83
diff
changeset
|
3019 # Only the "DICOM" attachment subsists |
|
0401ef51f5c1
test_reconstruct_json
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
83
diff
changeset
|
3020 self.assertEqual(1, len(DoGet(_REMOTE, '/instances/%s/attachments' % instance))) |
|
0401ef51f5c1
test_reconstruct_json
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
83
diff
changeset
|
3021 |
|
0401ef51f5c1
test_reconstruct_json
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
83
diff
changeset
|
3022 # Cannot manually reconstruct the "DICOM as JSON" attachment |
|
0401ef51f5c1
test_reconstruct_json
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
83
diff
changeset
|
3023 self.assertRaises(Exception, lambda: DoPut(_REMOTE, '/patients/%s/attachments/dicom-as-json' % patient, 'hello')) |
|
0401ef51f5c1
test_reconstruct_json
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
83
diff
changeset
|
3024 |
|
0401ef51f5c1
test_reconstruct_json
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
83
diff
changeset
|
3025 # Transparently reconstruct the "DICOM as JSON" attachment |
|
0401ef51f5c1
test_reconstruct_json
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
83
diff
changeset
|
3026 self.assertRaises(Exception, lambda: DoGet(_REMOTE, '/instances/%s/attachments/dicom-as-json' % instance)) |
|
0401ef51f5c1
test_reconstruct_json
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
83
diff
changeset
|
3027 second = DoGet(_REMOTE, '/instances/%s/tags' % instance) |
|
0401ef51f5c1
test_reconstruct_json
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
83
diff
changeset
|
3028 self.assertEqual(2, len(DoGet(_REMOTE, '/instances/%s/attachments' % instance))) |
|
0401ef51f5c1
test_reconstruct_json
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
83
diff
changeset
|
3029 |
|
0401ef51f5c1
test_reconstruct_json
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
83
diff
changeset
|
3030 third = DoGet(_REMOTE, '/instances/%s/attachments/dicom-as-json/data' % instance) |
|
0401ef51f5c1
test_reconstruct_json
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
83
diff
changeset
|
3031 self.assertEqual(str(first), str(second)) |
|
0401ef51f5c1
test_reconstruct_json
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
83
diff
changeset
|
3032 self.assertEqual(str(first), str(third)) |
|
87
4b24faec842b
test_reconstruct_json2 + test_private_tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
86
diff
changeset
|
3033 |
|
4b24faec842b
test_reconstruct_json2 + test_private_tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
86
diff
changeset
|
3034 |
|
4b24faec842b
test_reconstruct_json2 + test_private_tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
86
diff
changeset
|
3035 def test_reconstruct_json2(self): |
|
4b24faec842b
test_reconstruct_json2 + test_private_tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
86
diff
changeset
|
3036 self.assertEqual(0, len(DoGet(_REMOTE, '/patients'))) |
|
4b24faec842b
test_reconstruct_json2 + test_private_tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
86
diff
changeset
|
3037 |
|
4b24faec842b
test_reconstruct_json2 + test_private_tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
86
diff
changeset
|
3038 a = UploadInstance(_REMOTE, 'Brainix/Flair/IM-0001-0001.dcm')['ID'] |
|
4b24faec842b
test_reconstruct_json2 + test_private_tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
86
diff
changeset
|
3039 b = UploadInstance(_REMOTE, 'Knee/T2/IM-0001-0001.dcm')['ID'] |
|
4b24faec842b
test_reconstruct_json2 + test_private_tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
86
diff
changeset
|
3040 |
|
4b24faec842b
test_reconstruct_json2 + test_private_tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
86
diff
changeset
|
3041 self.assertEqual('BRAINIX', DoGet(_REMOTE, '/instances/%s/tags?simplify' % a)['PatientName']) |
|
4b24faec842b
test_reconstruct_json2 + test_private_tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
86
diff
changeset
|
3042 self.assertEqual('KNEE', DoGet(_REMOTE, '/instances/%s/tags?simplify' % b)['PatientName']) |
|
4b24faec842b
test_reconstruct_json2 + test_private_tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
86
diff
changeset
|
3043 |
|
4b24faec842b
test_reconstruct_json2 + test_private_tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
86
diff
changeset
|
3044 self.assertEqual(2, len(DoGet(_REMOTE, '/instances/%s/attachments' % a))) |
|
4b24faec842b
test_reconstruct_json2 + test_private_tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
86
diff
changeset
|
3045 self.assertEqual(2, len(DoGet(_REMOTE, '/instances/%s/attachments' % b))) |
|
4b24faec842b
test_reconstruct_json2 + test_private_tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
86
diff
changeset
|
3046 |
|
4b24faec842b
test_reconstruct_json2 + test_private_tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
86
diff
changeset
|
3047 DoPost(_REMOTE, '/tools/invalidate-tags', '', 'text/plain') |
|
4b24faec842b
test_reconstruct_json2 + test_private_tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
86
diff
changeset
|
3048 |
|
4b24faec842b
test_reconstruct_json2 + test_private_tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
86
diff
changeset
|
3049 self.assertEqual(1, len(DoGet(_REMOTE, '/instances/%s/attachments' % a))) |
|
4b24faec842b
test_reconstruct_json2 + test_private_tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
86
diff
changeset
|
3050 self.assertEqual(1, len(DoGet(_REMOTE, '/instances/%s/attachments' % b))) |
|
4b24faec842b
test_reconstruct_json2 + test_private_tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
86
diff
changeset
|
3051 |
|
4b24faec842b
test_reconstruct_json2 + test_private_tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
86
diff
changeset
|
3052 self.assertEqual('BRAINIX', DoGet(_REMOTE, '/instances/%s/tags?simplify' % a)['PatientName']) |
|
4b24faec842b
test_reconstruct_json2 + test_private_tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
86
diff
changeset
|
3053 self.assertEqual('KNEE', DoGet(_REMOTE, '/instances/%s/tags?simplify' % b)['PatientName']) |
|
4b24faec842b
test_reconstruct_json2 + test_private_tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
86
diff
changeset
|
3054 |
|
4b24faec842b
test_reconstruct_json2 + test_private_tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
86
diff
changeset
|
3055 self.assertEqual(2, len(DoGet(_REMOTE, '/instances/%s/attachments' % a))) |
|
4b24faec842b
test_reconstruct_json2 + test_private_tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
86
diff
changeset
|
3056 self.assertEqual(2, len(DoGet(_REMOTE, '/instances/%s/attachments' % b))) |
|
4b24faec842b
test_reconstruct_json2 + test_private_tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
86
diff
changeset
|
3057 |
|
4b24faec842b
test_reconstruct_json2 + test_private_tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
86
diff
changeset
|
3058 |
|
4b24faec842b
test_reconstruct_json2 + test_private_tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
86
diff
changeset
|
3059 def test_private_tags(self): |
|
4b24faec842b
test_reconstruct_json2 + test_private_tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
86
diff
changeset
|
3060 i = UploadInstance(_REMOTE, 'PrivateMDNTags.dcm')['ID'] |
|
4b24faec842b
test_reconstruct_json2 + test_private_tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
86
diff
changeset
|
3061 t = DoGet(_REMOTE, '/instances/%s/tags?simplify' % i) |
|
4b24faec842b
test_reconstruct_json2 + test_private_tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
86
diff
changeset
|
3062 self.assertEqual('1.2.840.113704.1.111.6320.1342451261.21', t['PET-CT Multi Modality Name']) |
|
4b24faec842b
test_reconstruct_json2 + test_private_tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
86
diff
changeset
|
3063 self.assertEqual('p37s0_na_ctac.img', t['Original Image Filename']) |
|
4b24faec842b
test_reconstruct_json2 + test_private_tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
86
diff
changeset
|
3064 |
|
92
dbcbffb889da
test_findscu_encoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
89
diff
changeset
|
3065 |
|
dbcbffb889da
test_findscu_encoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
89
diff
changeset
|
3066 def test_findscu_encoding(self): |
|
dbcbffb889da
test_findscu_encoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
89
diff
changeset
|
3067 # Check out ../Database/Encodings/Generate.sh |
|
dbcbffb889da
test_findscu_encoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
89
diff
changeset
|
3068 TEST = u'Test-éüäöòДΘĝדصķћ๛ﾈİ' |
|
dbcbffb889da
test_findscu_encoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
89
diff
changeset
|
3069 ENCODINGS = { |
|
dbcbffb889da
test_findscu_encoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
89
diff
changeset
|
3070 'Arabic' : [ 'ISO_IR 127' ], |
|
dbcbffb889da
test_findscu_encoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
89
diff
changeset
|
3071 'Ascii' : [ 'ISO_IR 6' ], # More accurately, ISO 646 |
|
dbcbffb889da
test_findscu_encoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
89
diff
changeset
|
3072 'Cyrillic' : [ 'ISO_IR 144' ], |
|
dbcbffb889da
test_findscu_encoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
89
diff
changeset
|
3073 'Greek' : [ 'ISO_IR 126' ], |
|
dbcbffb889da
test_findscu_encoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
89
diff
changeset
|
3074 'Hebrew' : [ 'ISO_IR 138' ], |
|
dbcbffb889da
test_findscu_encoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
89
diff
changeset
|
3075 'Japanese' : [ 'ISO_IR 13', 'shift-jis' ], |
|
dbcbffb889da
test_findscu_encoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
89
diff
changeset
|
3076 'Latin1' : [ 'ISO_IR 100' ], |
|
dbcbffb889da
test_findscu_encoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
89
diff
changeset
|
3077 'Latin2' : [ 'ISO_IR 101' ], |
|
dbcbffb889da
test_findscu_encoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
89
diff
changeset
|
3078 'Latin3' : [ 'ISO_IR 109' ], |
|
dbcbffb889da
test_findscu_encoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
89
diff
changeset
|
3079 'Latin4' : [ 'ISO_IR 110' ], |
|
dbcbffb889da
test_findscu_encoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
89
diff
changeset
|
3080 'Latin5' : [ 'ISO_IR 148' ], |
|
dbcbffb889da
test_findscu_encoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
89
diff
changeset
|
3081 'Thai' : [ 'ISO_IR 166', 'tis-620' ], |
|
dbcbffb889da
test_findscu_encoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
89
diff
changeset
|
3082 'Utf8' : [ 'ISO_IR 192' ], |
|
dbcbffb889da
test_findscu_encoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
89
diff
changeset
|
3083 } |
|
dbcbffb889da
test_findscu_encoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
89
diff
changeset
|
3084 |
|
dbcbffb889da
test_findscu_encoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
89
diff
changeset
|
3085 for name in ENCODINGS.iterkeys(): |
|
dbcbffb889da
test_findscu_encoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
89
diff
changeset
|
3086 if len(ENCODINGS[name]) == 1: |
|
dbcbffb889da
test_findscu_encoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
89
diff
changeset
|
3087 ENCODINGS[name].append(name.lower()) |
|
dbcbffb889da
test_findscu_encoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
89
diff
changeset
|
3088 |
|
dbcbffb889da
test_findscu_encoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
89
diff
changeset
|
3089 UploadInstance(_REMOTE, 'Encodings/Lena-utf8.dcm') |
|
dbcbffb889da
test_findscu_encoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
89
diff
changeset
|
3090 |
|
dbcbffb889da
test_findscu_encoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
89
diff
changeset
|
3091 for name in ENCODINGS.iterkeys(): |
|
dbcbffb889da
test_findscu_encoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
89
diff
changeset
|
3092 self.assertEqual(name, DoPut(_REMOTE, '/tools/default-encoding', name)) |
|
dbcbffb889da
test_findscu_encoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
89
diff
changeset
|
3093 self.assertEqual(name, DoGet(_REMOTE, '/tools/default-encoding')) |
|
dbcbffb889da
test_findscu_encoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
89
diff
changeset
|
3094 |
|
dbcbffb889da
test_findscu_encoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
89
diff
changeset
|
3095 i = CallFindScu([ '-k', '0008,0052=STUDY', |
|
dbcbffb889da
test_findscu_encoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
89
diff
changeset
|
3096 '-k', 'SpecificCharacterSet', |
|
dbcbffb889da
test_findscu_encoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
89
diff
changeset
|
3097 '-k', 'PatientName' ]) |
|
dbcbffb889da
test_findscu_encoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
89
diff
changeset
|
3098 |
|
dbcbffb889da
test_findscu_encoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
89
diff
changeset
|
3099 characterSet = re.findall('\(0008,0005\).*?\[(.*?)\]', i) |
|
dbcbffb889da
test_findscu_encoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
89
diff
changeset
|
3100 self.assertEqual(1, len(characterSet)) |
|
dbcbffb889da
test_findscu_encoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
89
diff
changeset
|
3101 self.assertEqual(ENCODINGS[name][0], characterSet[0].strip()) |
|
dbcbffb889da
test_findscu_encoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
89
diff
changeset
|
3102 |
|
dbcbffb889da
test_findscu_encoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
89
diff
changeset
|
3103 patientName = re.findall('\(0010,0010\).*?\[(.*?)\]', i) |
|
dbcbffb889da
test_findscu_encoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
89
diff
changeset
|
3104 self.assertEqual(1, len(patientName)) |
|
dbcbffb889da
test_findscu_encoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
89
diff
changeset
|
3105 |
|
dbcbffb889da
test_findscu_encoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
89
diff
changeset
|
3106 expected = TEST.encode(ENCODINGS[name][1], 'ignore') |
|
dbcbffb889da
test_findscu_encoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
89
diff
changeset
|
3107 self.assertEqual(expected, patientName[0].strip()) |
|
dbcbffb889da
test_findscu_encoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
89
diff
changeset
|
3108 |
|
dbcbffb889da
test_findscu_encoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
89
diff
changeset
|
3109 |
|
dbcbffb889da
test_findscu_encoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
89
diff
changeset
|
3110 #for master in ENCODINGS: |
|
dbcbffb889da
test_findscu_encoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
89
diff
changeset
|
3111 for master in [ 'Latin1', 'Utf8', 'Cyrillic' ]: # Shortcut to speedup tests |
|
dbcbffb889da
test_findscu_encoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
89
diff
changeset
|
3112 self.assertEqual(master, DoPut(_REMOTE, '/tools/default-encoding', master)) |
|
dbcbffb889da
test_findscu_encoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
89
diff
changeset
|
3113 self.assertEqual(master, DoGet(_REMOTE, '/tools/default-encoding')) |
|
dbcbffb889da
test_findscu_encoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
89
diff
changeset
|
3114 |
|
dbcbffb889da
test_findscu_encoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
89
diff
changeset
|
3115 for name in ENCODINGS: |
|
dbcbffb889da
test_findscu_encoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
89
diff
changeset
|
3116 DropOrthanc(_REMOTE) |
|
dbcbffb889da
test_findscu_encoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
89
diff
changeset
|
3117 UploadInstance(_REMOTE, 'Encodings/Lena-%s.dcm' % ENCODINGS[name][1]) |
|
dbcbffb889da
test_findscu_encoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
89
diff
changeset
|
3118 |
|
dbcbffb889da
test_findscu_encoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
89
diff
changeset
|
3119 i = CallFindScu([ '-k', '0008,0052=STUDY', |
|
dbcbffb889da
test_findscu_encoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
89
diff
changeset
|
3120 '-k', 'PatientID', |
|
dbcbffb889da
test_findscu_encoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
89
diff
changeset
|
3121 '-k', 'SpecificCharacterSet', |
|
dbcbffb889da
test_findscu_encoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
89
diff
changeset
|
3122 '-k', 'PatientName' ]) |
|
dbcbffb889da
test_findscu_encoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
89
diff
changeset
|
3123 i = i.decode(ENCODINGS[master][1]) |
|
dbcbffb889da
test_findscu_encoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
89
diff
changeset
|
3124 |
|
dbcbffb889da
test_findscu_encoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
89
diff
changeset
|
3125 characterSet = re.findall('\(0008,0005\).*?\[(.*?)\]', i) |
|
dbcbffb889da
test_findscu_encoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
89
diff
changeset
|
3126 self.assertEqual(1, len(characterSet)) |
|
dbcbffb889da
test_findscu_encoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
89
diff
changeset
|
3127 self.assertEqual(ENCODINGS[master][0], characterSet[0].strip()) |
|
dbcbffb889da
test_findscu_encoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
89
diff
changeset
|
3128 |
|
dbcbffb889da
test_findscu_encoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
89
diff
changeset
|
3129 patientId = re.findall('\(0010,0020\).*?\[(.*?)\]', i) |
|
dbcbffb889da
test_findscu_encoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
89
diff
changeset
|
3130 self.assertEqual(1, len(patientId)) |
|
dbcbffb889da
test_findscu_encoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
89
diff
changeset
|
3131 self.assertEqual(ENCODINGS[name][1], patientId[0].strip()) |
|
dbcbffb889da
test_findscu_encoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
89
diff
changeset
|
3132 |
|
dbcbffb889da
test_findscu_encoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
89
diff
changeset
|
3133 patientName = re.findall('\(0010,0010\).*?\[(.*?)\]', i) |
|
dbcbffb889da
test_findscu_encoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
89
diff
changeset
|
3134 self.assertEqual(1, len(patientName)) |
|
dbcbffb889da
test_findscu_encoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
89
diff
changeset
|
3135 |
|
dbcbffb889da
test_findscu_encoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
89
diff
changeset
|
3136 tmp = ENCODINGS[name][1] |
|
dbcbffb889da
test_findscu_encoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
89
diff
changeset
|
3137 expected = TEST.encode(tmp, 'ignore').decode(tmp) |
|
dbcbffb889da
test_findscu_encoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
89
diff
changeset
|
3138 tmp = ENCODINGS[master][1] |
|
dbcbffb889da
test_findscu_encoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
89
diff
changeset
|
3139 expected = expected.encode(tmp, 'ignore').decode(tmp) |
|
dbcbffb889da
test_findscu_encoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
89
diff
changeset
|
3140 |
|
dbcbffb889da
test_findscu_encoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
89
diff
changeset
|
3141 self.assertEqual(expected, patientName[0].strip()) |
|
dbcbffb889da
test_findscu_encoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
89
diff
changeset
|
3142 |
|
dbcbffb889da
test_findscu_encoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
89
diff
changeset
|
3143 |
|
dbcbffb889da
test_findscu_encoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
89
diff
changeset
|
3144 a = DoPost(_REMOTE, '/tools/find', { 'Expand' : True, |
|
dbcbffb889da
test_findscu_encoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
89
diff
changeset
|
3145 'Level' : 'Study', |
|
dbcbffb889da
test_findscu_encoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
89
diff
changeset
|
3146 'Query' : { }}) |
|
dbcbffb889da
test_findscu_encoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
89
diff
changeset
|
3147 self.assertEqual(1, len(a)) |
|
dbcbffb889da
test_findscu_encoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
89
diff
changeset
|
3148 |
|
dbcbffb889da
test_findscu_encoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
89
diff
changeset
|
3149 tmp = ENCODINGS[name][1] |
|
dbcbffb889da
test_findscu_encoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
89
diff
changeset
|
3150 self.assertEqual(TEST.encode(tmp, 'ignore').decode(tmp), a[0]["PatientMainDicomTags"]["PatientName"]) |
|
96
272d1229cb49
test reconstruction of tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
95
diff
changeset
|
3151 |
|
272d1229cb49
test reconstruction of tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
95
diff
changeset
|
3152 |
|
272d1229cb49
test reconstruction of tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
95
diff
changeset
|
3153 def test_reconstruct(self): |
|
272d1229cb49
test reconstruction of tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
95
diff
changeset
|
3154 def CompareMainDicomTag(expected, instance, level, tag): |
|
272d1229cb49
test reconstruction of tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
95
diff
changeset
|
3155 self.assertEqual(expected, DoGet(_REMOTE, '/instances/%s/%s' % (instance, level))['MainDicomTags'][tag].strip()) |
|
272d1229cb49
test reconstruction of tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
95
diff
changeset
|
3156 |
|
272d1229cb49
test reconstruction of tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
95
diff
changeset
|
3157 a = UploadInstance(_REMOTE, 'DummyCT.dcm')['ID'] |
|
272d1229cb49
test reconstruction of tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
95
diff
changeset
|
3158 |
|
272d1229cb49
test reconstruction of tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
95
diff
changeset
|
3159 studies = DoGet(_REMOTE, '/studies/') |
|
272d1229cb49
test reconstruction of tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
95
diff
changeset
|
3160 self.assertEqual(1, len(DoGet(_REMOTE, '/patients/'))) |
|
272d1229cb49
test reconstruction of tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
95
diff
changeset
|
3161 self.assertEqual(1, len(studies)) |
|
272d1229cb49
test reconstruction of tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
95
diff
changeset
|
3162 self.assertEqual(1, len(DoGet(_REMOTE, '/series/'))) |
|
272d1229cb49
test reconstruction of tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
95
diff
changeset
|
3163 self.assertEqual(1, len(DoGet(_REMOTE, '/instances/'))) |
|
272d1229cb49
test reconstruction of tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
95
diff
changeset
|
3164 |
|
272d1229cb49
test reconstruction of tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
95
diff
changeset
|
3165 modified = DoPost(_REMOTE, '/studies/%s/modify' % studies[0], { |
|
272d1229cb49
test reconstruction of tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
95
diff
changeset
|
3166 "Replace" : { |
|
272d1229cb49
test reconstruction of tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
95
diff
changeset
|
3167 "StudyDescription" : "hello", |
|
272d1229cb49
test reconstruction of tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
95
diff
changeset
|
3168 "SeriesDescription" : "world", |
|
272d1229cb49
test reconstruction of tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
95
diff
changeset
|
3169 "SOPClassUID" : "test", |
|
272d1229cb49
test reconstruction of tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
95
diff
changeset
|
3170 "SOPInstanceUID" : "myid", |
|
272d1229cb49
test reconstruction of tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
95
diff
changeset
|
3171 }, |
| 119 | 3172 "Keep" : [ "StudyInstanceUID", "SeriesInstanceUID" ], |
| 3173 "Force" : True | |
|
96
272d1229cb49
test reconstruction of tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
95
diff
changeset
|
3174 }) |
|
272d1229cb49
test reconstruction of tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
95
diff
changeset
|
3175 |
|
272d1229cb49
test reconstruction of tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
95
diff
changeset
|
3176 instances = DoGet(_REMOTE, '/instances/') |
|
272d1229cb49
test reconstruction of tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
95
diff
changeset
|
3177 self.assertEqual(1, len(DoGet(_REMOTE, '/patients/'))) |
|
272d1229cb49
test reconstruction of tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
95
diff
changeset
|
3178 self.assertEqual(1, len(DoGet(_REMOTE, '/studies/'))) |
|
272d1229cb49
test reconstruction of tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
95
diff
changeset
|
3179 self.assertEqual(1, len(DoGet(_REMOTE, '/series/'))) |
|
272d1229cb49
test reconstruction of tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
95
diff
changeset
|
3180 self.assertEqual(2, len(instances)) |
|
272d1229cb49
test reconstruction of tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
95
diff
changeset
|
3181 |
|
272d1229cb49
test reconstruction of tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
95
diff
changeset
|
3182 b = instances[0] if instances[1] == a else instances[1] |
|
272d1229cb49
test reconstruction of tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
95
diff
changeset
|
3183 |
|
272d1229cb49
test reconstruction of tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
95
diff
changeset
|
3184 CompareMainDicomTag('Knee (R)', a, 'study', 'StudyDescription') |
|
272d1229cb49
test reconstruction of tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
95
diff
changeset
|
3185 CompareMainDicomTag('AX. FSE PD', a, 'series', 'SeriesDescription') |
|
272d1229cb49
test reconstruction of tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
95
diff
changeset
|
3186 CompareMainDicomTag('1.2.840.113619.2.176.2025.1499492.7040.1171286242.109', a, '', 'SOPInstanceUID') |
|
272d1229cb49
test reconstruction of tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
95
diff
changeset
|
3187 CompareMainDicomTag('myid', b, '', 'SOPInstanceUID') |
|
272d1229cb49
test reconstruction of tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
95
diff
changeset
|
3188 self.assertEqual('1.2.840.10008.5.1.4.1.1.4', DoGet(_REMOTE, '/instances/%s/metadata/SopClassUid' % a).strip()) |
|
272d1229cb49
test reconstruction of tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
95
diff
changeset
|
3189 self.assertEqual('test', DoGet(_REMOTE, '/instances/%s/metadata/SopClassUid' % b).strip()) |
|
272d1229cb49
test reconstruction of tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
95
diff
changeset
|
3190 |
|
272d1229cb49
test reconstruction of tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
95
diff
changeset
|
3191 DoPost(_REMOTE, '/instances/%s/reconstruct' % b, {}) |
|
272d1229cb49
test reconstruction of tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
95
diff
changeset
|
3192 |
|
272d1229cb49
test reconstruction of tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
95
diff
changeset
|
3193 CompareMainDicomTag('hello', a, 'study', 'StudyDescription') |
|
272d1229cb49
test reconstruction of tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
95
diff
changeset
|
3194 CompareMainDicomTag('world', a, 'series', 'SeriesDescription') |
|
272d1229cb49
test reconstruction of tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
95
diff
changeset
|
3195 CompareMainDicomTag('1.2.840.113619.2.176.2025.1499492.7040.1171286242.109', a, '', 'SOPInstanceUID') |
| 102 | 3196 |
| 104 | 3197 def test_httpClient_lua(self): |
| 3198 with open(GetDatabasePath('Lua/HttpClient.lua'), 'r') as f: | |
| 102 | 3199 result = DoPost(_REMOTE, '/tools/execute-script', f.read(), 'application/lua') |
| 3200 | |
| 3201 self.assertIn('OK', result) | |
|
107
fddb35f7289d
test_bitbucket_issue_44
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
104
diff
changeset
|
3202 |
|
fddb35f7289d
test_bitbucket_issue_44
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
104
diff
changeset
|
3203 |
|
fddb35f7289d
test_bitbucket_issue_44
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
104
diff
changeset
|
3204 def test_bitbucket_issue_44(self): |
|
fddb35f7289d
test_bitbucket_issue_44
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
104
diff
changeset
|
3205 # https://bitbucket.org/sjodogne/orthanc/issues/44/bad-interpretation-of-photometric |
|
fddb35f7289d
test_bitbucket_issue_44
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
104
diff
changeset
|
3206 UploadInstance(_REMOTE, 'Issue44/Monochrome1.dcm') |
|
fddb35f7289d
test_bitbucket_issue_44
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
104
diff
changeset
|
3207 UploadInstance(_REMOTE, 'Issue44/Monochrome2.dcm') |
|
fddb35f7289d
test_bitbucket_issue_44
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
104
diff
changeset
|
3208 |
|
fddb35f7289d
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104
diff
changeset
|
3209 # dcmcjpeg +ua +eb Monochrome1.dcm Monochrome1-Jpeg.dcm |
|
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test_bitbucket_issue_44
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
104
diff
changeset
|
3210 UploadInstance(_REMOTE, 'Issue44/Monochrome1-Jpeg.dcm') |
|
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test_bitbucket_issue_44
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
104
diff
changeset
|
3211 |
|
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test_bitbucket_issue_44
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parents:
104
diff
changeset
|
3212 # dcmcjpeg +ua Monochrome1.dcm Monochrome1-JpegLS.dcm |
|
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test_bitbucket_issue_44
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
104
diff
changeset
|
3213 UploadInstance(_REMOTE, 'Issue44/Monochrome1-JpegLS.dcm') |
|
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Sebastien Jodogne <s.jodogne@gmail.com>
parents:
104
diff
changeset
|
3214 |
|
fddb35f7289d
test_bitbucket_issue_44
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
104
diff
changeset
|
3215 monochrome1 = 'bcdd600a-a6a9c522-5f0a6e84-8657c9f3-b76e59b7' |
|
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test_bitbucket_issue_44
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
104
diff
changeset
|
3216 monochrome1_jpeg = '9df82121-208a2da8-0038674a-3d7a773b-b7008cd2' |
|
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Sebastien Jodogne <s.jodogne@gmail.com>
parents:
104
diff
changeset
|
3217 monochrome1_jpegls = '0486d1a2-9165573f-b1976b20-e927b016-6b8d67ab' |
|
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test_bitbucket_issue_44
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
104
diff
changeset
|
3218 monochrome2 = 'f00947b7-f61f7164-c93414d1-c6fbda6a-9e92ed20' |
|
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test_bitbucket_issue_44
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
104
diff
changeset
|
3219 |
|
fddb35f7289d
test_bitbucket_issue_44
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
104
diff
changeset
|
3220 for i in [ monochrome1, monochrome1_jpeg, monochrome1_jpegls ]: |
|
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test_bitbucket_issue_44
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
104
diff
changeset
|
3221 im = GetImage(_REMOTE, '/instances/%s/preview' % i) |
|
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test_bitbucket_issue_44
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
104
diff
changeset
|
3222 self.assertEqual("L", im.mode) |
|
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test_bitbucket_issue_44
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
104
diff
changeset
|
3223 self.assertEqual(2010, im.size[0]) |
|
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test_bitbucket_issue_44
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
104
diff
changeset
|
3224 self.assertEqual(2446, im.size[1]) |
|
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test_bitbucket_issue_44
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
104
diff
changeset
|
3225 |
|
fddb35f7289d
test_bitbucket_issue_44
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
104
diff
changeset
|
3226 # This is the chest image, with MONOCHROME1. Raw background is |
|
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test_bitbucket_issue_44
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
104
diff
changeset
|
3227 # white (255), should be rendered as black (0) => invert |
|
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test_bitbucket_issue_44
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
104
diff
changeset
|
3228 if i == monochrome1_jpeg: |
|
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test_bitbucket_issue_44
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
104
diff
changeset
|
3229 # Add some tolerance because of JPEG destructive compression |
|
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test_bitbucket_issue_44
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
104
diff
changeset
|
3230 self.assertGreater(10, im.getpixel((0,0))) |
|
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test_bitbucket_issue_44
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
104
diff
changeset
|
3231 else: |
|
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test_bitbucket_issue_44
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
104
diff
changeset
|
3232 self.assertEqual(0, im.getpixel((0,0))) |
|
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test_bitbucket_issue_44
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
104
diff
changeset
|
3233 |
|
fddb35f7289d
test_bitbucket_issue_44
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
104
diff
changeset
|
3234 im = GetImage(_REMOTE, '/instances/%s/preview' % monochrome2) |
|
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Sebastien Jodogne <s.jodogne@gmail.com>
parents:
104
diff
changeset
|
3235 self.assertEqual("L", im.mode) |
|
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test_bitbucket_issue_44
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
104
diff
changeset
|
3236 self.assertEqual(1572, im.size[0]) |
|
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test_bitbucket_issue_44
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
104
diff
changeset
|
3237 self.assertEqual(2010, im.size[1]) |
|
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test_bitbucket_issue_44
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
104
diff
changeset
|
3238 |
|
fddb35f7289d
test_bitbucket_issue_44
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
104
diff
changeset
|
3239 # This is the key image, with MONOCHROME2. Raw background is |
|
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test_bitbucket_issue_44
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
104
diff
changeset
|
3240 # white (255), should be rendered as white (255) |
|
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Sebastien Jodogne <s.jodogne@gmail.com>
parents:
104
diff
changeset
|
3241 self.assertEqual(255, im.getpixel((0,0))) |
|
111
7005cdeeb704
test_bitbucket_issue_42
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
107
diff
changeset
|
3242 |
|
7005cdeeb704
test_bitbucket_issue_42
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
107
diff
changeset
|
3243 |
|
7005cdeeb704
test_bitbucket_issue_42
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
107
diff
changeset
|
3244 def test_bitbucket_issue_42(self): |
|
7005cdeeb704
test_bitbucket_issue_42
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
107
diff
changeset
|
3245 # https://bitbucket.org/sjodogne/orthanc/issues/42/fails-to-modify-a-dicom-video-file |
| 123 | 3246 # This test fails on DCMTK 3.6.0, but succeeds in DCMTK 3.6.1 snapshots and DCMTK 3.6.2 |
|
111
7005cdeeb704
test_bitbucket_issue_42
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
107
diff
changeset
|
3247 UploadInstance(_REMOTE, 'Issue42.dcm')['ID'] |
|
7005cdeeb704
test_bitbucket_issue_42
Sebastien Jodogne <s.jodogne@gmail.com>
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107
diff
changeset
|
3248 modified = DoPost(_REMOTE, |
|
7005cdeeb704
test_bitbucket_issue_42
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
107
diff
changeset
|
3249 '/patients/da128605-e040d0c4-310615d2-3475da63-df2d1ef4/modify', |
| 119 | 3250 '{"Replace":{"PatientID":"Hello","PatientName":"Sample patient name"},"Force":true}', |
|
111
7005cdeeb704
test_bitbucket_issue_42
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
107
diff
changeset
|
3251 'application/json') |
|
7005cdeeb704
test_bitbucket_issue_42
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
107
diff
changeset
|
3252 self.assertTrue('PatientID' in modified) |
|
113
3e5934363e76
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Sebastien Jodogne <s.jodogne@gmail.com>
parents:
112
diff
changeset
|
3253 |
|
3e5934363e76
test_rest_find_limitµ
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
112
diff
changeset
|
3254 |
|
3e5934363e76
test_rest_find_limitµ
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
112
diff
changeset
|
3255 def test_rest_find_limit(self): |
|
3e5934363e76
test_rest_find_limitµ
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
112
diff
changeset
|
3256 # Check the "Since" and "Limit" parameters in URI "/tools/find" |
|
3e5934363e76
test_rest_find_limitµ
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
112
diff
changeset
|
3257 # Related to issue 53: https://bitbucket.org/sjodogne/orthanc/issues/53 |
|
111
7005cdeeb704
test_bitbucket_issue_42
Sebastien Jodogne <s.jodogne@gmail.com>
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107
diff
changeset
|
3258 |
|
113
3e5934363e76
test_rest_find_limitµ
Sebastien Jodogne <s.jodogne@gmail.com>
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112
diff
changeset
|
3259 # Upload 6 instances |
|
3e5934363e76
test_rest_find_limitµ
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
112
diff
changeset
|
3260 brainix = [] |
|
3e5934363e76
test_rest_find_limitµ
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
112
diff
changeset
|
3261 knee = [] |
|
3e5934363e76
test_rest_find_limitµ
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
112
diff
changeset
|
3262 for i in range(2): |
|
3e5934363e76
test_rest_find_limitµ
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
112
diff
changeset
|
3263 brainix.append(UploadInstance(_REMOTE, 'Brainix/Flair/IM-0001-000%d.dcm' % (i + 1)) ['ID']) |
|
3e5934363e76
test_rest_find_limitµ
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
112
diff
changeset
|
3264 brainix.append(UploadInstance(_REMOTE, 'Brainix/Epi/IM-0001-000%d.dcm' % (i + 1)) ['ID']) |
|
3e5934363e76
test_rest_find_limitµ
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
112
diff
changeset
|
3265 knee.append(UploadInstance(_REMOTE, 'Knee/T1/IM-0001-000%d.dcm' % (i + 1)) ['ID']) |
|
3e5934363e76
test_rest_find_limitµ
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
112
diff
changeset
|
3266 |
|
3e5934363e76
test_rest_find_limitµ
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
112
diff
changeset
|
3267 # Check using BRAINIX |
|
3e5934363e76
test_rest_find_limitµ
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
112
diff
changeset
|
3268 a = DoPost(_REMOTE, '/tools/find', { 'Level' : 'Instance', |
|
3e5934363e76
test_rest_find_limitµ
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
112
diff
changeset
|
3269 'Query' : { 'PatientName' : 'B*' }, |
|
3e5934363e76
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Sebastien Jodogne <s.jodogne@gmail.com>
parents:
112
diff
changeset
|
3270 'Limit' : 10 }) |
|
3e5934363e76
test_rest_find_limitµ
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
112
diff
changeset
|
3271 self.assertEqual(4, len(a)) |
|
3e5934363e76
test_rest_find_limitµ
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
112
diff
changeset
|
3272 |
|
3e5934363e76
test_rest_find_limitµ
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
112
diff
changeset
|
3273 a = DoPost(_REMOTE, '/tools/find', { 'Level' : 'Instance', |
|
3e5934363e76
test_rest_find_limitµ
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
112
diff
changeset
|
3274 'Query' : { 'PatientName' : 'B*' }, |
|
3e5934363e76
test_rest_find_limitµ
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parents:
112
diff
changeset
|
3275 'Limit' : 4 }) |
|
3e5934363e76
test_rest_find_limitµ
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
112
diff
changeset
|
3276 self.assertEqual(4, len(a)) |
|
3e5934363e76
test_rest_find_limitµ
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
112
diff
changeset
|
3277 |
|
3e5934363e76
test_rest_find_limitµ
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
112
diff
changeset
|
3278 a = DoPost(_REMOTE, '/tools/find', { 'Level' : 'Instance', |
|
3e5934363e76
test_rest_find_limitµ
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112
diff
changeset
|
3279 'Query' : { 'PatientName' : 'B*' }, |
|
3e5934363e76
test_rest_find_limitµ
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112
diff
changeset
|
3280 'Since' : 2, |
|
3e5934363e76
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Sebastien Jodogne <s.jodogne@gmail.com>
parents:
112
diff
changeset
|
3281 'Limit' : 4 }) |
|
3e5934363e76
test_rest_find_limitµ
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
112
diff
changeset
|
3282 self.assertEqual(2, len(a)) |
|
3e5934363e76
test_rest_find_limitµ
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
112
diff
changeset
|
3283 |
|
3e5934363e76
test_rest_find_limitµ
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
112
diff
changeset
|
3284 a = DoPost(_REMOTE, '/tools/find', { 'Level' : 'Instance', |
|
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test_rest_find_limitµ
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112
diff
changeset
|
3285 'Query' : { 'PatientName' : 'B*' }, |
|
3e5934363e76
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diff
changeset
|
3286 'Limit' : 3 }) |
|
3e5934363e76
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parents:
112
diff
changeset
|
3287 self.assertEqual(3, len(a)) |
|
3e5934363e76
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parents:
112
diff
changeset
|
3288 |
|
3e5934363e76
test_rest_find_limitµ
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parents:
112
diff
changeset
|
3289 b = [] |
|
3e5934363e76
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parents:
112
diff
changeset
|
3290 for i in range(4): |
|
3e5934363e76
test_rest_find_limitµ
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parents:
112
diff
changeset
|
3291 a = DoPost(_REMOTE, '/tools/find', { 'Level' : 'Instance', |
|
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test_rest_find_limitµ
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diff
changeset
|
3292 'Query' : { 'PatientName' : 'B*' }, |
|
3e5934363e76
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diff
changeset
|
3293 'Limit' : 1, |
|
3e5934363e76
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112
diff
changeset
|
3294 'Since' : i }) |
|
3e5934363e76
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112
diff
changeset
|
3295 self.assertEqual(1, len(a)) |
|
3e5934363e76
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parents:
112
diff
changeset
|
3296 b.append(a[0]) |
|
3e5934363e76
test_rest_find_limitµ
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parents:
112
diff
changeset
|
3297 |
|
3e5934363e76
test_rest_find_limitµ
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parents:
112
diff
changeset
|
3298 # Check whether the two sets are equal through symmetric difference |
|
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parents:
112
diff
changeset
|
3299 self.assertEqual(0, len(set(b) ^ set(brainix))) |
|
3e5934363e76
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diff
changeset
|
3300 |
|
3e5934363e76
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diff
changeset
|
3301 # Check using KNEE |
|
3e5934363e76
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112
diff
changeset
|
3302 a = DoPost(_REMOTE, '/tools/find', { 'Level' : 'Instance', |
|
3e5934363e76
test_rest_find_limitµ
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diff
changeset
|
3303 'Query' : { 'PatientName' : 'K*' }, |
|
3e5934363e76
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diff
changeset
|
3304 'Limit' : 10 }) |
|
3e5934363e76
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diff
changeset
|
3305 self.assertEqual(2, len(a)) |
|
3e5934363e76
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parents:
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diff
changeset
|
3306 |
|
3e5934363e76
test_rest_find_limitµ
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parents:
112
diff
changeset
|
3307 a = DoPost(_REMOTE, '/tools/find', { 'Level' : 'Instance', |
|
3e5934363e76
test_rest_find_limitµ
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diff
changeset
|
3308 'Query' : { 'PatientName' : 'K*' }, |
|
3e5934363e76
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diff
changeset
|
3309 'Limit' : 2 }) |
|
3e5934363e76
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112
diff
changeset
|
3310 self.assertEqual(2, len(a)) |
|
3e5934363e76
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Sebastien Jodogne <s.jodogne@gmail.com>
parents:
112
diff
changeset
|
3311 |
|
3e5934363e76
test_rest_find_limitµ
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
112
diff
changeset
|
3312 b = [] |
|
3e5934363e76
test_rest_find_limitµ
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diff
changeset
|
3313 for i in range(2): |
|
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|
3314 a = DoPost(_REMOTE, '/tools/find', { 'Level' : 'Instance', |
|
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|
3315 'Query' : { 'PatientName' : 'K*' }, |
|
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|
3316 'Limit' : 1, |
|
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|
3317 'Since' : i }) |
|
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|
3318 self.assertEqual(1, len(a)) |
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|
3319 b.append(a[0]) |
|
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3320 |
|
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|
3321 self.assertEqual(0, len(set(b) ^ set(knee))) |
|
115
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test_bitbucket_issue_46
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3322 |
|
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|
3323 |
|
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|
3324 def test_bitbucket_issue_46(self): |
|
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3325 # "PHI remaining after anonymization" |
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|
3326 # https://bitbucket.org/sjodogne/orthanc/issues/46 |
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3327 |
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|
3328 def GetAnonymizedTags(study, version): |
|
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3329 anonymized = DoPost(_REMOTE, '/studies/%s/anonymize' % study, |
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|
3330 { 'DicomVersion' : version }, |
|
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3331 'application/json') ['ID'] |
|
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|
3332 a = DoGet(_REMOTE, '/studies/%s/instances' % anonymized) |
|
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|
3333 self.assertEqual(1, len(a)) |
|
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|
3334 |
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|
3335 instance = a[0]['ID'] |
|
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3336 |
|
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|
3337 return (instance, DoGet(_REMOTE, '/instances/%s/tags' % instance)) |
|
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|
3338 |
|
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|
3339 UploadInstance(_REMOTE, 'Issue44/Monochrome1.dcm') |
|
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|
3340 origStudy = '6068a14b-d4df27af-9ec22145-538772d8-74f228ff' |
|
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3341 |
|
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|
3342 # Add the 0032,1033 (Requesting Service) and the 0010,1060 |
|
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|
3343 # (Patient's Mother's Birth Name) tags |
|
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|
3344 newStudy = DoPost(_REMOTE, '/studies/%s/modify' % origStudy, |
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|
3345 '{"Replace":{"0010,1060":"OSIMIS","0032,1033":"MOTHER"}}', |
|
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|
3346 'application/json')['ID'] |
|
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|
3347 |
|
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|
3348 # Use Table E.1-1 from PS 3.15-2008 |
|
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|
3349 # https://raw.githubusercontent.com/jodogne/dicom-specification/master/2008/08_15pu.pdf |
|
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|
3350 (instance, tags) = GetAnonymizedTags(newStudy, "2008") |
|
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|
3351 self.assertTrue('0032,1033' in tags) |
|
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|
3352 self.assertTrue('0010,1060' in tags) |
|
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3353 |
|
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|
3354 # Use Table E.1-1 from PS 3.15-2011 (only if Orthanc >= 1.2.1) |
|
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|
3355 # https://raw.githubusercontent.com/jodogne/dicom-specification/master/2008/08_15pu.pdf |
|
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|
3356 (instance, tags) = GetAnonymizedTags(newStudy, "2017c") |
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|
3357 self.assertFalse('0032,1033' in tags) |
|
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|
3358 self.assertFalse('0010,1060' in tags) |
|
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3359 |
|
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|
3360 t = {} |
|
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|
3361 for (key, value) in tags.iteritems(): |
|
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|
3362 t[value['Name']] = value['Value'] |
|
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|
3363 |
|
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changeset
|
3364 self.assertEqual('', t['StudyDate']) # Type 1 tag => cleared |
|
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|
3365 self.assertEqual('', t['StudyTime']) # Type 1 tag => cleared |
|
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|
3366 self.assertEqual('', t['PatientSex']) # Type 1 tag => cleared |
|
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|
3367 self.assertFalse('SeriesDate' in t) # Type 3 tag => null |
|
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|
3368 self.assertFalse('SeriesTime' in t) # Type 3 tag => null |
|
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|
3369 |
|
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diff
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|
3370 with tempfile.NamedTemporaryFile(delete = True) as f: |
|
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|
3371 # Run "dciodvfy" on the anonymized file to be sure it is still valid |
|
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|
3372 f.write(DoGet(_REMOTE, '/instances/%s/file' % instance)) |
|
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|
3373 f.flush() |
|
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|
3374 subprocess.check_output([ FindExecutable('dciodvfy'), f.name ], |
|
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|
3375 stderr = subprocess.STDOUT).split('\n') |
|
118
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|
3376 |
|
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diff
changeset
|
3377 |
|
a954c535fef6
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changeset
|
3378 def test_bitbucket_issue_55(self): |
|
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|
3379 def Run(modify, query): |
|
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|
3380 self.assertEqual(1, len(DoGet(_REMOTE, '/instances'))) |
|
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|
3381 |
|
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|
3382 operation = 'modify' if modify else 'anonymize' |
|
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|
3383 |
|
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|
3384 self.assertRaises(Exception, lambda: DoPost( |
|
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|
3385 _REMOTE, '/studies/%s/%s' % (study, operation), query)) |
|
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|
3386 self.assertEqual(1, len(DoGet(_REMOTE, '/instances'))) |
|
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test_bitbucket_issue_55
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diff
changeset
|
3387 |
|
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test_bitbucket_issue_55
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diff
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|
3388 query["Force"] = True |
|
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|
3389 a = DoPost(_REMOTE, '/studies/%s/%s' % (study, operation), query)['Path'] |
|
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|
3390 self.assertEqual(2, len(DoGet(_REMOTE, '/instances'))) |
|
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|
3391 DoDelete(_REMOTE, a) |
|
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|
3392 |
|
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changeset
|
3393 self.assertEqual(1, len(DoGet(_REMOTE, '/instances'))) |
|
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|
3394 |
|
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|
3395 UploadInstance(_REMOTE, 'DummyCT.dcm') |
|
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|
3396 study = 'b9c08539-26f93bde-c81ab0d7-bffaf2cb-a4d0bdd0' |
|
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|
3397 |
|
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changeset
|
3398 Run(True, { "Replace" : { "StudyInstanceUID" : "world" } }) |
|
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|
3399 Run(True, { "Replace" : { "SeriesInstanceUID" : "world" } }) |
|
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|
3400 Run(True, { "Replace" : { "SOPInstanceUID" : "world" } }) |
|
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|
3401 |
|
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|
3402 Run(False, { "Keep" : [ "StudyInstanceUID" ]}) |
|
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|
3403 Run(False, { "Keep" : [ "SeriesInstanceUID" ]}) |
|
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|
3404 Run(False, { "Keep" : [ "SOPInstanceUID" ]}) |
|
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|
3405 |
|
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|
3406 Run(False, { "Replace" : { "StudyInstanceUID" : "world" } }) |
|
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|
3407 Run(False, { "Replace" : { "SeriesInstanceUID" : "world" } }) |
|
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|
3408 Run(False, { "Replace" : { "SOPInstanceUID" : "world" } }) |
|
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|
3409 |
|
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|
3410 |
|
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|
3411 def test_bitbucket_issue_56(self): |
|
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|
3412 # Case-insensitive matching over accents. This test assumes |
|
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|
3413 # that the "CaseSensitivePN" configuration option of Orthanc |
|
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|
3414 # is set to "false" (default value). |
|
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|
3415 # https://bitbucket.org/sjodogne/orthanc/issues/56 |
|
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|
3416 |
|
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|
3417 def Check(name, expected, expectedSensitive): |
|
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changeset
|
3418 a = CallFindScu([ '-k', '0008,0005=ISO_IR 192', # Use UTF-8 |
|
fce08afe6b2d
test_bitbucket_issue_56
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
119
diff
changeset
|
3419 '-k', '0008,0052=PATIENT', |
|
fce08afe6b2d
test_bitbucket_issue_56
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
119
diff
changeset
|
3420 '-k', 'PatientName=%s' % name ]) |
|
fce08afe6b2d
test_bitbucket_issue_56
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
119
diff
changeset
|
3421 patientNames = re.findall('\(0010,0010\).*?\[(.*?)\]', a) |
|
fce08afe6b2d
test_bitbucket_issue_56
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
119
diff
changeset
|
3422 self.assertEqual(expected, len(patientNames)) |
|
fce08afe6b2d
test_bitbucket_issue_56
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
119
diff
changeset
|
3423 |
|
fce08afe6b2d
test_bitbucket_issue_56
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
119
diff
changeset
|
3424 a = DoPost(_REMOTE, '/tools/find', { 'Level' : 'Patient', |
|
fce08afe6b2d
test_bitbucket_issue_56
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
119
diff
changeset
|
3425 'CaseSensitive' : False, |
|
fce08afe6b2d
test_bitbucket_issue_56
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
119
diff
changeset
|
3426 'Query' : { 'PatientName' : name }}) |
|
fce08afe6b2d
test_bitbucket_issue_56
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
119
diff
changeset
|
3427 self.assertEqual(expected, len(a)) |
|
fce08afe6b2d
test_bitbucket_issue_56
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
119
diff
changeset
|
3428 |
|
fce08afe6b2d
test_bitbucket_issue_56
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
119
diff
changeset
|
3429 a = DoPost(_REMOTE, '/tools/find', { 'Level' : 'Patient', |
|
fce08afe6b2d
test_bitbucket_issue_56
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
119
diff
changeset
|
3430 'CaseSensitive' : True, |
|
fce08afe6b2d
test_bitbucket_issue_56
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
119
diff
changeset
|
3431 'Query' : { 'PatientName' : name }}) |
|
fce08afe6b2d
test_bitbucket_issue_56
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
119
diff
changeset
|
3432 self.assertEqual(expectedSensitive, len(a)) |
|
fce08afe6b2d
test_bitbucket_issue_56
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
119
diff
changeset
|
3433 |
|
fce08afe6b2d
test_bitbucket_issue_56
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
119
diff
changeset
|
3434 UploadInstance(_REMOTE, 'Encodings/Lena-latin1.dcm') |
|
fce08afe6b2d
test_bitbucket_issue_56
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
119
diff
changeset
|
3435 |
|
fce08afe6b2d
test_bitbucket_issue_56
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
119
diff
changeset
|
3436 # WildcardConstraint |
|
fce08afe6b2d
test_bitbucket_issue_56
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
119
diff
changeset
|
3437 Check('TeSt*', 1, 0) |
|
fce08afe6b2d
test_bitbucket_issue_56
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
119
diff
changeset
|
3438 Check('TeSt-a*', 0, 0) |
|
fce08afe6b2d
test_bitbucket_issue_56
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
119
diff
changeset
|
3439 Check('TeSt-É*', 1, 0) |
|
fce08afe6b2d
test_bitbucket_issue_56
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
119
diff
changeset
|
3440 Check('TeSt-é*', 1, 0) |
|
fce08afe6b2d
test_bitbucket_issue_56
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
119
diff
changeset
|
3441 Check('Test-é*', 1, 1) |
|
fce08afe6b2d
test_bitbucket_issue_56
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
119
diff
changeset
|
3442 |
|
fce08afe6b2d
test_bitbucket_issue_56
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
119
diff
changeset
|
3443 # ListConstraint |
|
fce08afe6b2d
test_bitbucket_issue_56
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
119
diff
changeset
|
3444 Check('Test-éüäöò\\nope', 1, 1) |
|
fce08afe6b2d
test_bitbucket_issue_56
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
119
diff
changeset
|
3445 Check('Test-ÉÜÄÖÒ\\nope', 1, 0) |
|
fce08afe6b2d
test_bitbucket_issue_56
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
119
diff
changeset
|
3446 |
|
fce08afe6b2d
test_bitbucket_issue_56
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
119
diff
changeset
|
3447 # ValueConstraint |
|
fce08afe6b2d
test_bitbucket_issue_56
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
119
diff
changeset
|
3448 Check('Test-éüäöò', 1, 1) |
|
fce08afe6b2d
test_bitbucket_issue_56
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
119
diff
changeset
|
3449 Check('Test-ÉÜÄÖÒ', 1, 0) |
|
fce08afe6b2d
test_bitbucket_issue_56
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
119
diff
changeset
|
3450 |
| 125 | 3451 |
| 3452 def test_gbk_alias(self): | |
| 3453 # https://groups.google.com/d/msg/orthanc-users/WMM8LMbjpUc/02-1f_yFCgAJ | |
| 3454 # This test fails on Orthanc <= 1.3.0 | |
| 3455 i = UploadInstance(_REMOTE, '2017-09-19-GBK-Tumashu.dcm')['ID'] | |
| 3456 tags = DoGet(_REMOTE, '/instances/%s/tags?simplify' % i) | |
| 3457 self.assertEqual(tags['PatientName'], u'徐浩凯') | |
| 3458 self.assertEqual(tags['InstitutionName'], u'灌云县疾病预防控制中心') | |
| 126 | 3459 |
| 3460 | |
| 3461 def test_long_tag(self): | |
| 3462 i = UploadInstance(_REMOTE, 'DummyCTWithLongTag.dcm')['ID'] | |
| 3463 series = 'f2635388-f01d497a-15f7c06b-ad7dba06-c4c599fe' | |
| 3464 | |
| 3465 tags = DoGet(_REMOTE, '/instances/%s/tags' % i) | |
| 3466 self.assertTrue('0018,1020' in tags) | |
| 3467 self.assertEqual('SoftwareVersions', tags['0018,1020']['Name']) | |
| 3468 self.assertEqual('TooLong', tags['0018,1020']['Type']) | |
| 3469 self.assertEqual(None, tags['0018,1020']['Value']) | |
| 3470 | |
| 3471 tags = DoGet(_REMOTE, '/instances/%s/tags?ignore-length=0018-1020' % i) | |
| 3472 self.assertTrue('0018,1020' in tags) | |
| 3473 self.assertEqual('SoftwareVersions', tags['0018,1020']['Name']) | |
| 3474 self.assertEqual('String', tags['0018,1020']['Type']) | |
| 3475 self.assertTrue(tags['0018,1020']['Value'].startswith('Lorem ipsum dolor sit amet')) | |
| 3476 | |
| 3477 tags = DoGet(_REMOTE, '/instances/%s/tags?simplify' % i) | |
| 3478 self.assertTrue('SoftwareVersions' in tags) | |
| 3479 self.assertEqual(None, tags['SoftwareVersions']) | |
| 3480 self.assertTrue('HeartRate' in tags) | |
| 3481 self.assertEqual(474, int(tags['HeartRate'])) | |
| 3482 | |
| 3483 tags = DoGet(_REMOTE, '/instances/%s/simplified-tags' % i) | |
| 3484 self.assertTrue('SoftwareVersions' in tags) | |
| 3485 self.assertEqual(None, tags['SoftwareVersions']) | |
| 3486 | |
| 3487 tags = DoGet(_REMOTE, '/instances/%s/tags?simplify&ignore-length=0018-1020' % i) | |
| 3488 self.assertTrue('SoftwareVersions' in tags) | |
| 3489 self.assertTrue(tags['SoftwareVersions'].startswith('Lorem ipsum dolor sit amet')) | |
| 3490 | |
| 3491 tags = DoGet(_REMOTE, '/instances/%s/tags?simplify&ignore-length=SoftwareVersions' % i) | |
| 3492 self.assertTrue('SoftwareVersions' in tags) | |
| 3493 self.assertTrue(tags['SoftwareVersions'].startswith('Lorem ipsum dolor sit amet')) | |
| 3494 | |
| 3495 tags = DoGet(_REMOTE, '/series/%s/instances-tags' % series) | |
| 3496 self.assertEqual(1, len(tags)) | |
| 3497 self.assertTrue(i in tags.keys()) | |
| 3498 self.assertTrue('0018,1020' in tags[i]) | |
| 3499 self.assertEqual('TooLong', tags[i]['0018,1020']['Type']) | |
| 3500 | |
| 3501 tags = DoGet(_REMOTE, '/series/%s/instances-tags?ignore-length=SoftwareVersions' % series) | |
| 3502 self.assertEqual(1, len(tags)) | |
| 3503 self.assertTrue(i in tags.keys()) | |
| 3504 self.assertTrue('0018,1020' in tags[i]) | |
| 3505 self.assertEqual('String', tags[i]['0018,1020']['Type']) | |
| 3506 self.assertTrue(tags[i]['0018,1020']['Value'].startswith('Lorem ipsum dolor sit amet')) | |
| 3507 | |
|
127
1eea4d3a1ba9
test_extended_media
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
126
diff
changeset
|
3508 |
|
1eea4d3a1ba9
test_extended_media
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
126
diff
changeset
|
3509 def test_extended_media(self): |
|
1eea4d3a1ba9
test_extended_media
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
126
diff
changeset
|
3510 UploadInstance(_REMOTE, 'Knee/T1/IM-0001-0001.dcm') |
|
1eea4d3a1ba9
test_extended_media
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
126
diff
changeset
|
3511 |
|
1eea4d3a1ba9
test_extended_media
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
126
diff
changeset
|
3512 z = GetArchive(_REMOTE, '/patients/%s/media?extended' % DoGet(_REMOTE, '/patients')[0]) |
|
1eea4d3a1ba9
test_extended_media
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
126
diff
changeset
|
3513 self.assertEqual(2, len(z.namelist())) |
|
1eea4d3a1ba9
test_extended_media
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
126
diff
changeset
|
3514 self.assertTrue('IMAGES/IM0' in z.namelist()) |
|
1eea4d3a1ba9
test_extended_media
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
126
diff
changeset
|
3515 self.assertTrue('DICOMDIR' in z.namelist()) |
|
1eea4d3a1ba9
test_extended_media
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
126
diff
changeset
|
3516 |
|
1eea4d3a1ba9
test_extended_media
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
126
diff
changeset
|
3517 try: |
|
1eea4d3a1ba9
test_extended_media
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
126
diff
changeset
|
3518 os.remove('/tmp/DICOMDIR') |
|
1eea4d3a1ba9
test_extended_media
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
126
diff
changeset
|
3519 except: |
|
1eea4d3a1ba9
test_extended_media
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
126
diff
changeset
|
3520 # The file does not exist |
|
1eea4d3a1ba9
test_extended_media
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
126
diff
changeset
|
3521 pass |
|
1eea4d3a1ba9
test_extended_media
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
126
diff
changeset
|
3522 |
|
1eea4d3a1ba9
test_extended_media
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
126
diff
changeset
|
3523 z.extract('DICOMDIR', '/tmp') |
|
1eea4d3a1ba9
test_extended_media
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
126
diff
changeset
|
3524 a = subprocess.check_output([ FindExecutable('dciodvfy'), '/tmp/DICOMDIR' ], |
|
1eea4d3a1ba9
test_extended_media
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
126
diff
changeset
|
3525 stderr = subprocess.STDOUT).split('\n') |
|
1eea4d3a1ba9
test_extended_media
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
126
diff
changeset
|
3526 self.assertEqual(5, len(a)) |
|
1eea4d3a1ba9
test_extended_media
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
126
diff
changeset
|
3527 self.assertTrue(a[0].startswith('Warning')) |
|
1eea4d3a1ba9
test_extended_media
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
126
diff
changeset
|
3528 self.assertEqual('BasicDirectory', a[1]) |
|
1eea4d3a1ba9
test_extended_media
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
126
diff
changeset
|
3529 self.assertTrue('not present in standard DICOM IOD' in a[2]) |
|
1eea4d3a1ba9
test_extended_media
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
126
diff
changeset
|
3530 self.assertTrue('not present in standard DICOM IOD' in a[3]) |
|
1eea4d3a1ba9
test_extended_media
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
126
diff
changeset
|
3531 self.assertEqual('', a[4]) |
|
1eea4d3a1ba9
test_extended_media
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
126
diff
changeset
|
3532 |
|
1eea4d3a1ba9
test_extended_media
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
126
diff
changeset
|
3533 a = subprocess.check_output([ FindExecutable('dcentvfy'), '/tmp/DICOMDIR' ], |
|
1eea4d3a1ba9
test_extended_media
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
126
diff
changeset
|
3534 stderr = subprocess.STDOUT).split('\n') |
|
1eea4d3a1ba9
test_extended_media
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
126
diff
changeset
|
3535 self.assertEqual(1, len(a)) |
|
1eea4d3a1ba9
test_extended_media
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
126
diff
changeset
|
3536 self.assertEqual('', a[0]) |
|
1eea4d3a1ba9
test_extended_media
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
126
diff
changeset
|
3537 |
|
1eea4d3a1ba9
test_extended_media
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
126
diff
changeset
|
3538 a = subprocess.check_output([ FindExecutable('dcm2xml'), '/tmp/DICOMDIR' ]) |
|
1eea4d3a1ba9
test_extended_media
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
126
diff
changeset
|
3539 self.assertTrue(re.search('1.3.46.670589.11.17521.5.0.3124.2008081908590448738', a) != None) |
|
1eea4d3a1ba9
test_extended_media
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
126
diff
changeset
|
3540 |
|
1eea4d3a1ba9
test_extended_media
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
126
diff
changeset
|
3541 # Check the presence of the series description (extended tag) |
|
1eea4d3a1ba9
test_extended_media
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
126
diff
changeset
|
3542 self.assertTrue(re.search('T1W_aTSE', a) != None) |
|
1eea4d3a1ba9
test_extended_media
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
126
diff
changeset
|
3543 |
|
1eea4d3a1ba9
test_extended_media
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
126
diff
changeset
|
3544 os.remove('/tmp/DICOMDIR') |
|
1eea4d3a1ba9
test_extended_media
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
126
diff
changeset
|
3545 |
|
1eea4d3a1ba9
test_extended_media
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
126
diff
changeset
|
3546 |
|
132
149144d854bb
Orthanc.test_anonymize_relationships_1/2
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
130
diff
changeset
|
3547 def test_anonymize_relationships_1(self): |
|
133
f0d4c4707e64
test_anonymize_relationships_3
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
132
diff
changeset
|
3548 UploadInstance(_REMOTE, 'Knee/T1/IM-0001-0001.dcm') |
|
f0d4c4707e64
test_anonymize_relationships_3
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
132
diff
changeset
|
3549 UploadInstance(_REMOTE, 'Knee/T1/IM-0001-0002.dcm') |
|
132
149144d854bb
Orthanc.test_anonymize_relationships_1/2
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
130
diff
changeset
|
3550 study = '0a9b3153-2512774b-2d9580de-1fc3dcf6-3bd83918' |
|
149144d854bb
Orthanc.test_anonymize_relationships_1/2
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
130
diff
changeset
|
3551 |
|
149144d854bb
Orthanc.test_anonymize_relationships_1/2
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
130
diff
changeset
|
3552 anonymized = DoPost(_REMOTE, '/studies/%s/anonymize' % study, |
|
149144d854bb
Orthanc.test_anonymize_relationships_1/2
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
130
diff
changeset
|
3553 '{}', |
|
149144d854bb
Orthanc.test_anonymize_relationships_1/2
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
130
diff
changeset
|
3554 'application/json')['ID'] |
|
149144d854bb
Orthanc.test_anonymize_relationships_1/2
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
130
diff
changeset
|
3555 |
|
149144d854bb
Orthanc.test_anonymize_relationships_1/2
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
130
diff
changeset
|
3556 a = DoGet(_REMOTE, '/studies/%s/instances' % study) |
|
149144d854bb
Orthanc.test_anonymize_relationships_1/2
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
130
diff
changeset
|
3557 self.assertEqual(2, len(a)) |
|
149144d854bb
Orthanc.test_anonymize_relationships_1/2
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
130
diff
changeset
|
3558 a1 = a[0]['ID'] |
|
149144d854bb
Orthanc.test_anonymize_relationships_1/2
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
130
diff
changeset
|
3559 a2 = a[1]['ID'] |
|
149144d854bb
Orthanc.test_anonymize_relationships_1/2
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
130
diff
changeset
|
3560 |
|
149144d854bb
Orthanc.test_anonymize_relationships_1/2
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
130
diff
changeset
|
3561 b = DoGet(_REMOTE, '/studies/%s/instances' % anonymized) |
|
149144d854bb
Orthanc.test_anonymize_relationships_1/2
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
130
diff
changeset
|
3562 self.assertEqual(2, len(b)) |
|
149144d854bb
Orthanc.test_anonymize_relationships_1/2
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
130
diff
changeset
|
3563 b1 = b[0]['ID'] |
|
149144d854bb
Orthanc.test_anonymize_relationships_1/2
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
130
diff
changeset
|
3564 b2 = b[1]['ID'] |
|
149144d854bb
Orthanc.test_anonymize_relationships_1/2
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
130
diff
changeset
|
3565 |
|
149144d854bb
Orthanc.test_anonymize_relationships_1/2
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
130
diff
changeset
|
3566 SEQUENCE = '/instances/%s/content/ReferencedImageSequence' |
|
149144d854bb
Orthanc.test_anonymize_relationships_1/2
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
130
diff
changeset
|
3567 SOP = '/instances/%s/content/ReferencedImageSequence/%d/ReferencedSOPInstanceUID' |
|
149144d854bb
Orthanc.test_anonymize_relationships_1/2
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
130
diff
changeset
|
3568 CLASS = '/instances/%s/content/ReferencedImageSequence/%d/ReferencedSOPClassUID' |
|
149144d854bb
Orthanc.test_anonymize_relationships_1/2
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
130
diff
changeset
|
3569 FRAME = '/instances/%s/content/FrameOfReferenceUID' |
|
149144d854bb
Orthanc.test_anonymize_relationships_1/2
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
130
diff
changeset
|
3570 |
|
149144d854bb
Orthanc.test_anonymize_relationships_1/2
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
130
diff
changeset
|
3571 self.assertEqual(DoGet(_REMOTE, FRAME % a1), |
|
149144d854bb
Orthanc.test_anonymize_relationships_1/2
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
130
diff
changeset
|
3572 DoGet(_REMOTE, FRAME % a2)) |
|
149144d854bb
Orthanc.test_anonymize_relationships_1/2
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
130
diff
changeset
|
3573 self.assertEqual(DoGet(_REMOTE, FRAME % b1), |
|
149144d854bb
Orthanc.test_anonymize_relationships_1/2
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
130
diff
changeset
|
3574 DoGet(_REMOTE, FRAME % b2)) |
|
149144d854bb
Orthanc.test_anonymize_relationships_1/2
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
130
diff
changeset
|
3575 self.assertNotEqual(DoGet(_REMOTE, FRAME % a1), |
|
149144d854bb
Orthanc.test_anonymize_relationships_1/2
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
130
diff
changeset
|
3576 DoGet(_REMOTE, FRAME % b1)) |
|
149144d854bb
Orthanc.test_anonymize_relationships_1/2
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
130
diff
changeset
|
3577 self.assertNotEqual(DoGet(_REMOTE, FRAME % a2), |
|
149144d854bb
Orthanc.test_anonymize_relationships_1/2
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
130
diff
changeset
|
3578 DoGet(_REMOTE, FRAME % b2)) |
|
149144d854bb
Orthanc.test_anonymize_relationships_1/2
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
130
diff
changeset
|
3579 |
|
149144d854bb
Orthanc.test_anonymize_relationships_1/2
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
130
diff
changeset
|
3580 self.assertEqual(3, len(DoGet(_REMOTE, SEQUENCE % a1))) |
|
149144d854bb
Orthanc.test_anonymize_relationships_1/2
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
130
diff
changeset
|
3581 self.assertEqual(3, len(DoGet(_REMOTE, SEQUENCE % a2))) |
|
149144d854bb
Orthanc.test_anonymize_relationships_1/2
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
130
diff
changeset
|
3582 self.assertEqual(3, len(DoGet(_REMOTE, SEQUENCE % b1))) |
|
149144d854bb
Orthanc.test_anonymize_relationships_1/2
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
130
diff
changeset
|
3583 self.assertEqual(3, len(DoGet(_REMOTE, SEQUENCE % b2))) |
|
149144d854bb
Orthanc.test_anonymize_relationships_1/2
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
130
diff
changeset
|
3584 |
|
149144d854bb
Orthanc.test_anonymize_relationships_1/2
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
130
diff
changeset
|
3585 for i in range(3): |
|
149144d854bb
Orthanc.test_anonymize_relationships_1/2
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
130
diff
changeset
|
3586 self.assertEqual(DoGet(_REMOTE, SOP % (a1, i)), |
|
149144d854bb
Orthanc.test_anonymize_relationships_1/2
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
130
diff
changeset
|
3587 DoGet(_REMOTE, SOP % (a2, i))) |
|
149144d854bb
Orthanc.test_anonymize_relationships_1/2
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
130
diff
changeset
|
3588 self.assertEqual(DoGet(_REMOTE, SOP % (b1, i)), |
|
149144d854bb
Orthanc.test_anonymize_relationships_1/2
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
130
diff
changeset
|
3589 DoGet(_REMOTE, SOP % (b2, i))) |
|
149144d854bb
Orthanc.test_anonymize_relationships_1/2
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
130
diff
changeset
|
3590 self.assertNotEqual(DoGet(_REMOTE, SOP % (a1, i)), |
|
149144d854bb
Orthanc.test_anonymize_relationships_1/2
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
130
diff
changeset
|
3591 DoGet(_REMOTE, SOP % (b1, i))) |
|
149144d854bb
Orthanc.test_anonymize_relationships_1/2
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
130
diff
changeset
|
3592 self.assertNotEqual(DoGet(_REMOTE, SOP % (a2, i)), |
|
149144d854bb
Orthanc.test_anonymize_relationships_1/2
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
130
diff
changeset
|
3593 DoGet(_REMOTE, SOP % (b2, i))) |
|
149144d854bb
Orthanc.test_anonymize_relationships_1/2
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
130
diff
changeset
|
3594 self.assertEqual(DoGet(_REMOTE, CLASS % (a1, i)), |
|
149144d854bb
Orthanc.test_anonymize_relationships_1/2
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
130
diff
changeset
|
3595 DoGet(_REMOTE, CLASS % (b1, i))) |
|
149144d854bb
Orthanc.test_anonymize_relationships_1/2
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
130
diff
changeset
|
3596 self.assertEqual(DoGet(_REMOTE, CLASS % (a2, i)), |
|
149144d854bb
Orthanc.test_anonymize_relationships_1/2
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
130
diff
changeset
|
3597 DoGet(_REMOTE, CLASS % (b2, i))) |
|
149144d854bb
Orthanc.test_anonymize_relationships_1/2
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
130
diff
changeset
|
3598 |
|
149144d854bb
Orthanc.test_anonymize_relationships_1/2
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
130
diff
changeset
|
3599 |
|
149144d854bb
Orthanc.test_anonymize_relationships_1/2
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
130
diff
changeset
|
3600 def test_anonymize_relationships_2(self): |
|
133
f0d4c4707e64
test_anonymize_relationships_3
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
132
diff
changeset
|
3601 UploadInstance(_REMOTE, 'Comunix/Ct/IM-0001-0001.dcm') |
|
f0d4c4707e64
test_anonymize_relationships_3
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
132
diff
changeset
|
3602 UploadInstance(_REMOTE, 'Comunix/Ct/IM-0001-0002.dcm') |
|
132
149144d854bb
Orthanc.test_anonymize_relationships_1/2
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
130
diff
changeset
|
3603 study = '6c65289b-db2fcb71-7eaf73f4-8e12470c-a4d6d7cf' |
|
149144d854bb
Orthanc.test_anonymize_relationships_1/2
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
130
diff
changeset
|
3604 |
|
149144d854bb
Orthanc.test_anonymize_relationships_1/2
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
130
diff
changeset
|
3605 anonymized = DoPost(_REMOTE, '/studies/%s/anonymize' % study, |
|
149144d854bb
Orthanc.test_anonymize_relationships_1/2
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
130
diff
changeset
|
3606 '{}', |
|
149144d854bb
Orthanc.test_anonymize_relationships_1/2
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
130
diff
changeset
|
3607 'application/json')['ID'] |
|
149144d854bb
Orthanc.test_anonymize_relationships_1/2
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
130
diff
changeset
|
3608 |
|
149144d854bb
Orthanc.test_anonymize_relationships_1/2
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
130
diff
changeset
|
3609 a = DoGet(_REMOTE, '/studies/%s/instances' % study) |
|
149144d854bb
Orthanc.test_anonymize_relationships_1/2
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
130
diff
changeset
|
3610 self.assertEqual(2, len(a)) |
|
149144d854bb
Orthanc.test_anonymize_relationships_1/2
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
130
diff
changeset
|
3611 a1 = a[0]['ID'] |
|
149144d854bb
Orthanc.test_anonymize_relationships_1/2
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
130
diff
changeset
|
3612 a2 = a[1]['ID'] |
|
149144d854bb
Orthanc.test_anonymize_relationships_1/2
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
130
diff
changeset
|
3613 |
|
149144d854bb
Orthanc.test_anonymize_relationships_1/2
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
130
diff
changeset
|
3614 b = DoGet(_REMOTE, '/studies/%s/instances' % anonymized) |
|
149144d854bb
Orthanc.test_anonymize_relationships_1/2
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
130
diff
changeset
|
3615 self.assertEqual(2, len(b)) |
|
149144d854bb
Orthanc.test_anonymize_relationships_1/2
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
130
diff
changeset
|
3616 b1 = b[0]['ID'] |
|
149144d854bb
Orthanc.test_anonymize_relationships_1/2
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
130
diff
changeset
|
3617 b2 = b[1]['ID'] |
|
149144d854bb
Orthanc.test_anonymize_relationships_1/2
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
130
diff
changeset
|
3618 |
|
149144d854bb
Orthanc.test_anonymize_relationships_1/2
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
130
diff
changeset
|
3619 SEQUENCE = '/instances/%s/content/SourceImageSequence' |
|
149144d854bb
Orthanc.test_anonymize_relationships_1/2
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
130
diff
changeset
|
3620 SOP = '/instances/%s/content/SourceImageSequence/%d/ReferencedSOPInstanceUID' |
|
149144d854bb
Orthanc.test_anonymize_relationships_1/2
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
130
diff
changeset
|
3621 CLASS = '/instances/%s/content/SourceImageSequence/%d/ReferencedSOPClassUID' |
|
149144d854bb
Orthanc.test_anonymize_relationships_1/2
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
130
diff
changeset
|
3622 |
|
149144d854bb
Orthanc.test_anonymize_relationships_1/2
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
130
diff
changeset
|
3623 self.assertEqual(1, len(DoGet(_REMOTE, SEQUENCE % a1))) |
|
149144d854bb
Orthanc.test_anonymize_relationships_1/2
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
130
diff
changeset
|
3624 self.assertEqual(1, len(DoGet(_REMOTE, SEQUENCE % a2))) |
|
149144d854bb
Orthanc.test_anonymize_relationships_1/2
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
130
diff
changeset
|
3625 self.assertEqual(1, len(DoGet(_REMOTE, SEQUENCE % b1))) |
|
149144d854bb
Orthanc.test_anonymize_relationships_1/2
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
130
diff
changeset
|
3626 self.assertEqual(1, len(DoGet(_REMOTE, SEQUENCE % b2))) |
|
149144d854bb
Orthanc.test_anonymize_relationships_1/2
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
130
diff
changeset
|
3627 self.assertEqual(DoGet(_REMOTE, SOP % (a1, 0)), |
|
149144d854bb
Orthanc.test_anonymize_relationships_1/2
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
130
diff
changeset
|
3628 DoGet(_REMOTE, SOP % (a2, 0))) |
|
149144d854bb
Orthanc.test_anonymize_relationships_1/2
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
130
diff
changeset
|
3629 self.assertEqual(DoGet(_REMOTE, SOP % (b1, 0)), |
|
149144d854bb
Orthanc.test_anonymize_relationships_1/2
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
130
diff
changeset
|
3630 DoGet(_REMOTE, SOP % (b2, 0))) |
|
149144d854bb
Orthanc.test_anonymize_relationships_1/2
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
130
diff
changeset
|
3631 self.assertNotEqual(DoGet(_REMOTE, SOP % (a1, 0)), |
|
149144d854bb
Orthanc.test_anonymize_relationships_1/2
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
130
diff
changeset
|
3632 DoGet(_REMOTE, SOP % (b1, 0))) |
|
149144d854bb
Orthanc.test_anonymize_relationships_1/2
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
130
diff
changeset
|
3633 self.assertNotEqual(DoGet(_REMOTE, SOP % (a2, 0)), |
|
149144d854bb
Orthanc.test_anonymize_relationships_1/2
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
130
diff
changeset
|
3634 DoGet(_REMOTE, SOP % (b2, 0))) |
|
149144d854bb
Orthanc.test_anonymize_relationships_1/2
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
130
diff
changeset
|
3635 self.assertEqual(DoGet(_REMOTE, CLASS % (a1, 0)), |
|
149144d854bb
Orthanc.test_anonymize_relationships_1/2
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
130
diff
changeset
|
3636 DoGet(_REMOTE, CLASS % (b1, 0))) |
|
149144d854bb
Orthanc.test_anonymize_relationships_1/2
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
130
diff
changeset
|
3637 self.assertEqual(DoGet(_REMOTE, CLASS % (a2, 0)), |
|
149144d854bb
Orthanc.test_anonymize_relationships_1/2
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
130
diff
changeset
|
3638 DoGet(_REMOTE, CLASS % (b2, 0))) |
|
133
f0d4c4707e64
test_anonymize_relationships_3
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
132
diff
changeset
|
3639 |
|
f0d4c4707e64
test_anonymize_relationships_3
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
132
diff
changeset
|
3640 |
|
f0d4c4707e64
test_anonymize_relationships_3
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
132
diff
changeset
|
3641 def test_anonymize_relationships_3(self): |
|
f0d4c4707e64
test_anonymize_relationships_3
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
132
diff
changeset
|
3642 sr1 = UploadInstance(_REMOTE, 'HierarchicalAnonymization/StructuredReports/IM0')['ID'] |
|
f0d4c4707e64
test_anonymize_relationships_3
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
132
diff
changeset
|
3643 mr1 = UploadInstance(_REMOTE, 'HierarchicalAnonymization/StructuredReports/IM631')['ID'] |
|
f0d4c4707e64
test_anonymize_relationships_3
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
132
diff
changeset
|
3644 study = 'ef351eb2-c1147229-062736b8-35a151e3-e32d526b' |
|
f0d4c4707e64
test_anonymize_relationships_3
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
132
diff
changeset
|
3645 |
|
f0d4c4707e64
test_anonymize_relationships_3
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
132
diff
changeset
|
3646 anonymized = DoPost(_REMOTE, '/studies/%s/anonymize' % study, |
|
f0d4c4707e64
test_anonymize_relationships_3
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
132
diff
changeset
|
3647 { "Keep" : [ "ContentSequence" ] }) ['ID'] |
|
f0d4c4707e64
test_anonymize_relationships_3
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
132
diff
changeset
|
3648 |
|
f0d4c4707e64
test_anonymize_relationships_3
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
132
diff
changeset
|
3649 a = DoGet(_REMOTE, '/studies/%s/instances' % anonymized) |
|
f0d4c4707e64
test_anonymize_relationships_3
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
132
diff
changeset
|
3650 self.assertEqual(2, len(a)) |
|
f0d4c4707e64
test_anonymize_relationships_3
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
132
diff
changeset
|
3651 |
|
f0d4c4707e64
test_anonymize_relationships_3
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
132
diff
changeset
|
3652 if DoGet(_REMOTE, '/instances/%s/content/Modality' % a[0]['ID']) == 'SR': |
|
f0d4c4707e64
test_anonymize_relationships_3
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
132
diff
changeset
|
3653 sr2 = a[0]['ID'] |
|
f0d4c4707e64
test_anonymize_relationships_3
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
132
diff
changeset
|
3654 mr2 = a[1]['ID'] |
|
f0d4c4707e64
test_anonymize_relationships_3
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
132
diff
changeset
|
3655 else: |
|
f0d4c4707e64
test_anonymize_relationships_3
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
132
diff
changeset
|
3656 sr2 = a[1]['ID'] |
|
f0d4c4707e64
test_anonymize_relationships_3
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
132
diff
changeset
|
3657 mr2 = a[0]['ID'] |
|
f0d4c4707e64
test_anonymize_relationships_3
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
132
diff
changeset
|
3658 |
|
f0d4c4707e64
test_anonymize_relationships_3
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3659 self.assertEqual(DoGet(_REMOTE, '/instances/%s/content/Modality' % sr1), |
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3660 DoGet(_REMOTE, '/instances/%s/content/Modality' % sr2)) |
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3661 self.assertEqual(DoGet(_REMOTE, '/instances/%s/content/Modality' % mr1), |
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3662 DoGet(_REMOTE, '/instances/%s/content/Modality' % mr2)) |
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3663 |
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diff
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3664 mrUid1 = DoGet(_REMOTE, '/instances/%s' % mr1)['MainDicomTags']['SOPInstanceUID'] |
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3665 mrUid2 = DoGet(_REMOTE, '/instances/%s' % mr2)['MainDicomTags']['SOPInstanceUID'] |
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3666 mrSeries1 = DoGet(_REMOTE, '/instances/%s/content/SeriesInstanceUID' % mr1).strip('\x00') |
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3667 mrSeries2 = DoGet(_REMOTE, '/instances/%s/content/SeriesInstanceUID' % mr2).strip('\x00') |
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3668 mrStudy1 = DoGet(_REMOTE, '/instances/%s/content/StudyInstanceUID' % mr1).strip('\x00') |
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3669 mrStudy2 = DoGet(_REMOTE, '/instances/%s/content/StudyInstanceUID' % mr2).strip('\x00') |
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3670 |
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diff
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3671 PATH1 = '/instances/%s/content/CurrentRequestedProcedureEvidenceSequence' |
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3672 PATH2 = PATH1 + '/0/ReferencedSeriesSequence' |
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3673 PATH3 = PATH2 + '/0/ReferencedSOPSequence' |
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3674 PATH4 = PATH3 + '/0/ReferencedSOPInstanceUID' |
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3675 PATH5 = PATH3 + '/0/ReferencedSOPClassUID' |
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3676 |
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3677 self.assertEqual(1, len(DoGet(_REMOTE, PATH1 % sr1))) |
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3678 self.assertEqual(1, len(DoGet(_REMOTE, PATH2 % sr1))) |
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3679 self.assertEqual(1, len(DoGet(_REMOTE, PATH3 % sr1))) |
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3680 self.assertEqual(DoGet(_REMOTE, PATH4 % sr1), mrUid1) |
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3681 self.assertEqual(mrSeries1, DoGet(_REMOTE, (PATH2 + '/0/SeriesInstanceUID') % sr1).strip('\x00')) |
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3682 self.assertEqual(mrStudy1, DoGet(_REMOTE, (PATH1 + '/0/StudyInstanceUID') % sr1).strip('\x00')) |
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3683 |
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|
3684 self.assertEqual(1, len(DoGet(_REMOTE, PATH1 % sr2))) |
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3685 self.assertEqual(1, len(DoGet(_REMOTE, PATH2 % sr2))) |
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3686 self.assertEqual(1, len(DoGet(_REMOTE, PATH3 % sr2))) |
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3687 self.assertEqual(DoGet(_REMOTE, PATH5 % sr1), DoGet(_REMOTE, PATH5 % sr2)) |
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|
3688 |
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diff
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|
3689 self.assertEqual(mrUid2, DoGet(_REMOTE, PATH4 % sr2).strip('\x00')) |
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|
3690 self.assertEqual(mrSeries2, DoGet(_REMOTE, (PATH2 + '/0/SeriesInstanceUID') % sr2).strip('\x00')) |
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|
3691 self.assertEqual(mrStudy2, DoGet(_REMOTE, (PATH1 + '/0/StudyInstanceUID') % sr2).strip('\x00')) |
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diff
changeset
|
3692 |
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|
3693 content1 = DoGet(_REMOTE, '/instances/%s/tags?simplify' % sr1) ['ContentSequence'] |
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|
3694 content2 = DoGet(_REMOTE, '/instances/%s/tags?simplify' % sr2) ['ContentSequence'] |
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3695 self.assertEqual(str(content1), str(content2)) |