Mercurial > hg > orthanc-tests
annotate Tests/Tests.py @ 70:9e7b5809481f Orthanc-1.0.0
test range search
| author | Sebastien Jodogne <s.jodogne@gmail.com> |
|---|---|
| date | Fri, 11 Dec 2015 15:59:17 +0100 |
| parents | 83fd88230097 |
| children | 48740070cbf1 97acfdf0dbce |
| rev | line source |
|---|---|
| 22 | 1 #!/usr/bin/env python |
| 2 # -*- coding: utf-8 -*- | |
| 3 | |
| 4 | |
| 3 | 5 # Orthanc - A Lightweight, RESTful DICOM Store |
| 6 # Copyright (C) 2012-2015 Sebastien Jodogne, Medical Physics | |
| 7 # Department, University Hospital of Liege, Belgium | |
| 8 # | |
| 9 # This program is free software: you can redistribute it and/or | |
| 10 # modify it under the terms of the GNU General Public License as | |
| 11 # published by the Free Software Foundation, either version 3 of the | |
| 12 # License, or (at your option) any later version. | |
| 13 # | |
| 14 # This program is distributed in the hope that it will be useful, but | |
| 15 # WITHOUT ANY WARRANTY; without even the implied warranty of | |
| 16 # MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU | |
| 17 # General Public License for more details. | |
| 18 # | |
| 19 # You should have received a copy of the GNU General Public License | |
| 20 # along with this program. If not, see <http://www.gnu.org/licenses/>. | |
| 21 | |
| 22 | |
| 14 | 23 import tempfile |
| 3 | 24 import unittest |
| 36 | 25 import base64 |
| 3 | 26 |
| 11 | 27 from PIL import ImageChops |
| 3 | 28 from Toolbox import * |
| 13 | 29 from xml.dom import minidom |
| 3 | 30 |
| 31 _LOCAL = None | |
| 32 _REMOTE = None | |
| 33 | |
| 34 | |
| 35 def SetOrthancParameters(local, remote): | |
| 36 global _LOCAL, _REMOTE | |
| 37 _LOCAL = local | |
| 38 _REMOTE = remote | |
| 39 | |
| 40 | |
| 14 | 41 def ExtractDicomTags(rawDicom, tags): |
| 42 with tempfile.NamedTemporaryFile(delete = True) as f: | |
| 43 f.write(rawDicom) | |
| 44 f.flush() | |
| 45 | 45 data = subprocess.check_output([ FindExecutable('dcm2xml'), f.name ]) |
| 14 | 46 |
| 47 result = [] | |
| 48 for tag in tags: | |
| 49 match = re.search('<element[^>]+name="%s">([^>]*)</element>' % tag, data) | |
| 50 if match == None: | |
| 51 result.append('') | |
| 52 else: | |
| 53 result.append(match.group(1)) | |
| 54 | |
| 55 return result | |
| 56 | |
| 57 | |
| 15 | 58 def InstallLuaScript(path): |
| 59 with open(GetDatabasePath(path), 'r') as f: | |
| 60 DoPost(_REMOTE, '/tools/execute-script', f.read(), 'application/lua') | |
| 61 | |
| 62 | |
| 63 def UninstallLuaCallbacks(): | |
| 64 DoPost(_REMOTE, '/tools/execute-script', 'function OnStoredInstance() end', 'application/lua') | |
| 43 | 65 InstallLuaScript('Lua/TransferSyntaxEnable.lua') |
| 15 | 66 |
| 67 | |
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68 def CompareLists(a, b): |
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69 if len(a) != len(b): |
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70 return False |
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71 |
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72 for i in range(len(a)): |
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73 d = a[i] - b[i] |
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74 if abs(d) >= 0.51: # Add some tolerance for rounding errors |
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75 return False |
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76 |
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77 return True |
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78 |
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79 |
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80 def CallMoveScu(args): |
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81 subprocess.check_call([ FindExecutable('movescu'), |
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82 '--move', _LOCAL['DicomAet'], # Target AET (i.e. storescp) |
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83 '--call', _REMOTE['DicomAet'], # Called AET (i.e. Orthanc) |
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84 '--aetitle', _LOCAL['DicomAet'], # Calling AET (i.e. storescp) |
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85 _REMOTE['Server'], str(_REMOTE['DicomPort']) ] + args, |
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86 stderr=subprocess.PIPE) |
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87 |
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88 |
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89 |
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90 def GenerateTestSequence(): |
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91 return [ |
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92 { |
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93 'StudyDescription': 'Hello^', |
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94 'ReferencedStudySequence' : [ |
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95 { |
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96 'StudyDescription': 'Toto', |
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97 }, |
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98 { |
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99 'StudyDescription': 'Tata', |
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100 }, |
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101 ] |
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102 }, |
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103 { |
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104 'StudyDescription': 'Sébastien^', |
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105 'StudyDate' : '19700202', |
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106 } |
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107 ] |
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108 |
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109 |
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110 |
| 15 | 111 |
| 3 | 112 class Orthanc(unittest.TestCase): |
| 113 def setUp(self): | |
| 114 DropOrthanc(_LOCAL) | |
| 115 DropOrthanc(_REMOTE) | |
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116 UninstallLuaCallbacks() |
| 45 | 117 #print "In test", self._testMethodName |
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118 |
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119 def AssertSameImages(self, truth, url): |
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120 im = GetImage(_REMOTE, url) |
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121 self.assertTrue(CompareLists(truth, im.getdata())) |
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122 |
| 3 | 123 |
| 124 def test_system(self): | |
| 125 self.assertTrue('Version' in DoGet(_REMOTE, '/system')) | |
| 126 self.assertEqual('0', DoGet(_REMOTE, '/statistics')['TotalDiskSize']) | |
| 127 self.assertEqual('0', DoGet(_REMOTE, '/statistics')['TotalUncompressedSize']) | |
| 128 | |
| 129 def test_upload(self): | |
| 130 u = UploadInstance(_REMOTE, 'DummyCT.dcm') | |
| 131 self.assertEqual('Success', u['Status']) | |
| 132 u = UploadInstance(_REMOTE, 'DummyCT.dcm') | |
| 133 self.assertEqual('AlreadyStored', u['Status']) | |
| 134 self.assertEqual(1, len(DoGet(_REMOTE, '/patients'))) | |
| 135 self.assertEqual(1, len(DoGet(_REMOTE, '/studies'))) | |
| 136 self.assertEqual(1, len(DoGet(_REMOTE, '/series'))) | |
| 137 self.assertEqual(1, len(DoGet(_REMOTE, '/instances'))) | |
| 138 | |
| 139 i = DoGet(_REMOTE, '/instances/%s/simplified-tags' % u['ID']) | |
| 140 self.assertEqual('20070101', i['StudyDate']) | |
| 141 | |
| 142 | |
| 5 | 143 def test_upload_2(self): |
| 3 | 144 i = UploadInstance(_REMOTE, 'DummyCT.dcm')['ID'] |
| 145 instance = DoGet(_REMOTE, '/instances/%s' % i) | |
| 146 self.assertEqual(i, instance['ID']) | |
| 147 self.assertEqual('1.2.840.113619.2.176.2025.1499492.7040.1171286242.109', | |
| 148 instance['MainDicomTags']['SOPInstanceUID']) | |
| 149 | |
| 150 series = DoGet(_REMOTE, '/series/%s' % instance['ParentSeries']) | |
| 151 self.assertEqual('1.2.840.113619.2.176.2025.1499492.7391.1171285944.394', | |
| 152 series['MainDicomTags']['SeriesInstanceUID']) | |
| 153 | |
| 154 study = DoGet(_REMOTE, '/studies/%s' % series['ParentStudy']) | |
| 155 self.assertEqual('1.2.840.113619.2.176.2025.1499492.7391.1171285944.390', | |
| 156 study['MainDicomTags']['StudyInstanceUID']) | |
| 157 | |
| 158 patient = DoGet(_REMOTE, '/patients/%s' % study['ParentPatient']) | |
| 159 self.assertEqual('ozp00SjY2xG', | |
| 160 patient['MainDicomTags']['PatientID']) | |
| 161 | |
| 162 dicom = DoGet(_REMOTE, '/instances/%s/file' % instance['ID']) | |
| 163 self.assertEqual(2472, len(dicom)) | |
| 164 self.assertEqual('3e29b869978b6db4886355a2b1132124', ComputeMD5(dicom)) | |
| 165 self.assertEqual(1, len(DoGet(_REMOTE, '/instances/%s/frames' % i))) | |
| 166 self.assertEqual('TWINOW', DoGet(_REMOTE, '/instances/%s/simplified-tags' % i)['StationName']) | |
| 167 self.assertEqual('TWINOW', DoGet(_REMOTE, '/instances/%s/tags' % i)['0008,1010']['Value']) | |
| 168 | |
| 169 | |
| 5 | 170 def test_images(self): |
| 171 i = UploadInstance(_REMOTE, 'Phenix/IM-0001-0001.dcm')['ID'] | |
| 172 self.assertEqual(1, len(DoGet(_REMOTE, '/instances/%s/frames' % i))) | |
| 3 | 173 |
| 5 | 174 im = GetImage(_REMOTE, '/instances/%s/preview' % i) |
| 175 self.assertEqual("L", im.mode) | |
| 176 self.assertEqual(512, im.size[0]) | |
| 177 self.assertEqual(358, im.size[1]) | |
| 178 | |
| 179 im = GetImage(_REMOTE, '/instances/%s/image-uint8' % i) | |
| 180 self.assertEqual("L", im.mode) | |
| 181 self.assertEqual(512, im.size[0]) | |
| 182 self.assertEqual(358, im.size[1]) | |
| 183 | |
| 184 im = GetImage(_REMOTE, '/instances/%s/image-uint16' % i) | |
| 185 self.assertEqual(512, im.size[0]) | |
| 186 self.assertEqual(358, im.size[1]) | |
| 187 | |
| 188 im = GetImage(_REMOTE, '/instances/%s/frames/0/preview' % i) | |
| 189 self.assertEqual("L", im.mode) | |
| 190 self.assertEqual(512, im.size[0]) | |
| 191 self.assertEqual(358, im.size[1]) | |
| 192 | |
| 193 im = GetImage(_REMOTE, '/instances/%s/frames/0/image-uint8' % i) | |
| 194 self.assertEqual("L", im.mode) | |
| 195 self.assertEqual(512, im.size[0]) | |
| 196 self.assertEqual(358, im.size[1]) | |
| 197 | |
| 198 im = GetImage(_REMOTE, '/instances/%s/frames/0/image-uint16' % i) | |
| 199 self.assertEqual(512, im.size[0]) | |
| 200 self.assertEqual(358, im.size[1]) | |
| 64 | 201 |
| 202 # This is Little Endian Explicit | |
| 203 self.assertEqual('1.2.840.10008.1.2.1', DoGet(_REMOTE, '/instances/%s/header?simplify' % i)['TransferSyntaxUID']) | |
| 204 | |
| 6 | 205 |
| 206 def test_hierarchy(self): | |
| 207 UploadFolder(_REMOTE, 'Brainix/Epi') | |
| 208 UploadFolder(_REMOTE, 'Brainix/Flair') | |
| 209 UploadFolder(_REMOTE, 'Knee/T1') | |
| 210 UploadFolder(_REMOTE, 'Knee/T2') | |
| 211 | |
| 212 p = DoGet(_REMOTE, '/patients') | |
| 213 s = DoGet(_REMOTE, '/studies') | |
| 214 t = DoGet(_REMOTE, '/series') | |
| 215 self.assertEqual(2, len(p)) | |
| 216 self.assertEqual(2, len(s)) | |
| 217 self.assertEqual(4, len(t)) | |
| 218 self.assertEqual(94, len(DoGet(_REMOTE, '/instances'))) | |
| 219 | |
| 220 brainixPatient = '16738bc3-e47ed42a-43ce044c-a3414a45-cb069bd0' | |
| 221 brainixStudy = '27f7126f-4f66fb14-03f4081b-f9341db2-53925988' | |
| 222 brainixEpi = '2ac1316d-3e432022-62eabff2-c59f5475-9b1ac3f8' | |
| 223 brainixFlair = '1e2c125c-411b8e86-3f4fe68e-a7584dd3-c6da78f0' | |
| 224 | |
| 225 kneePatient = 'ca29faea-b6a0e17f-067743a1-8b778011-a48b2a17' | |
| 226 kneeStudy = '0a9b3153-2512774b-2d9580de-1fc3dcf6-3bd83918' | |
| 227 kneeT1 = '6de73705-c4e65c1b-9d9ea1b5-cabcd8e7-f15e4285' | |
| 228 kneeT2 = 'bbf7a453-0d34251a-03663b55-46bb31b9-ffd74c59' | |
| 229 | |
| 230 self.assertTrue(brainixPatient in p) | |
| 231 self.assertTrue(kneePatient in p) | |
| 232 self.assertTrue(brainixStudy in s) | |
| 233 self.assertTrue(kneeStudy in s) | |
| 234 self.assertTrue(brainixEpi in t) | |
| 235 self.assertTrue(brainixFlair in t) | |
| 236 self.assertTrue(kneeT1 in t) | |
| 237 self.assertTrue(kneeT2 in t) | |
| 238 | |
| 239 self.assertEqual(44, len(DoGet(_REMOTE, '/patients/%s/instances' % brainixPatient))) | |
| 240 self.assertEqual(2, len(DoGet(_REMOTE, '/patients/%s/series' % brainixPatient))) | |
| 241 self.assertEqual(1, len(DoGet(_REMOTE, '/patients/%s/studies' % brainixPatient))) | |
| 242 | |
| 243 self.assertEqual(50, len(DoGet(_REMOTE, '/patients/%s/instances' % kneePatient))) | |
| 244 self.assertEqual(2, len(DoGet(_REMOTE, '/patients/%s/series' % kneePatient))) | |
| 245 self.assertEqual(1, len(DoGet(_REMOTE, '/patients/%s/studies' % kneePatient))) | |
| 246 | |
| 247 self.assertEqual(2, len(DoGet(_REMOTE, '/studies/%s/series' % brainixStudy))) | |
| 248 self.assertEqual(44, len(DoGet(_REMOTE, '/studies/%s/instances' % brainixStudy))) | |
| 249 | |
| 250 self.assertEqual(2, len(DoGet(_REMOTE, '/studies/%s/series' % kneeStudy))) | |
| 251 self.assertEqual(50, len(DoGet(_REMOTE, '/studies/%s/instances' % kneeStudy))) | |
| 252 | |
| 253 self.assertEqual(22, len(DoGet(_REMOTE, '/series/%s/instances' % brainixEpi))) | |
| 254 self.assertEqual(22, len(DoGet(_REMOTE, '/series/%s/instances' % brainixFlair))) | |
| 255 self.assertEqual(24, len(DoGet(_REMOTE, '/series/%s/instances' % kneeT1))) | |
| 256 self.assertEqual(26, len(DoGet(_REMOTE, '/series/%s/instances' % kneeT2))) | |
| 257 | |
| 258 for patient in p: | |
| 259 for study in DoGet(_REMOTE, '/patients/%s/studies' % patient): | |
| 260 self.assertEqual(patient, study['ParentPatient']) | |
| 261 for series in DoGet(_REMOTE, '/studies/%s/series' % study['ID']): | |
| 262 self.assertEqual(study['ID'], series['ParentStudy']) | |
| 263 for instance in DoGet(_REMOTE, '/series/%s/instances' % series['ID']): | |
| 264 self.assertEqual(series['ID'], instance['ParentSeries']) | |
| 265 | |
| 266 self.assertEqual(json.dumps(DoGet(_REMOTE, '/instances/%s/attachments/dicom-as-json/data' % instance['ID'])), | |
| 267 json.dumps(DoGet(_REMOTE, '/instances/%s/tags' % instance['ID']))) | |
| 268 | |
| 269 | |
| 270 r = DoDelete(_REMOTE, "/studies/%s" % brainixStudy)['RemainingAncestor'] | |
| 271 self.assertEqual(1, len(DoGet(_REMOTE, '/patients'))) | |
| 272 self.assertEqual(1, len(DoGet(_REMOTE, '/studies'))) | |
| 273 self.assertEqual(2, len(DoGet(_REMOTE, '/series'))) | |
| 274 self.assertEqual(50, len(DoGet(_REMOTE, '/instances'))) | |
| 275 self.assertEqual(None, r) | |
| 276 | |
| 277 r = DoDelete(_REMOTE, "/series/%s" % kneeT2)['RemainingAncestor'] | |
| 278 self.assertEqual(1, len(DoGet(_REMOTE, '/patients'))) | |
| 279 self.assertEqual(1, len(DoGet(_REMOTE, '/studies'))) | |
| 280 self.assertEqual(1, len(DoGet(_REMOTE, '/series'))) | |
| 281 self.assertEqual(24, len(DoGet(_REMOTE, '/instances'))) | |
| 282 self.assertEqual('Study', r['Type']) | |
| 283 self.assertEqual(kneeStudy, r['ID']) | |
| 284 | |
| 285 r = DoDelete(_REMOTE, "/instances/%s" % DoGet(_REMOTE, '/instances')[0])['RemainingAncestor'] | |
| 286 self.assertEqual(1, len(DoGet(_REMOTE, '/patients'))) | |
| 287 self.assertEqual(1, len(DoGet(_REMOTE, '/studies'))) | |
| 288 self.assertEqual(1, len(DoGet(_REMOTE, '/series'))) | |
| 289 self.assertEqual(23, len(DoGet(_REMOTE, '/instances'))) | |
| 290 self.assertEqual('Series', r['Type']) | |
| 291 self.assertEqual(kneeT1, r['ID']) | |
| 292 | |
| 293 r = DoDelete(_REMOTE, "/patients/%s" % kneePatient)['RemainingAncestor'] | |
| 294 self.assertEqual(0, len(DoGet(_REMOTE, '/patients'))) | |
| 295 self.assertEqual(0, len(DoGet(_REMOTE, '/studies'))) | |
| 296 self.assertEqual(0, len(DoGet(_REMOTE, '/series'))) | |
| 297 self.assertEqual(0, len(DoGet(_REMOTE, '/instances'))) | |
| 298 self.assertEqual(None, r) | |
| 299 | |
| 300 DropOrthanc(_REMOTE) | |
| 301 self.assertEqual('0', DoGet(_REMOTE, '/statistics')['TotalDiskSize']) | |
| 302 self.assertEqual('0', DoGet(_REMOTE, '/statistics')['TotalUncompressedSize']) | |
| 7 | 303 |
| 304 | |
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305 def test_multiframe(self): |
| 7 | 306 i = UploadInstance(_REMOTE, 'Multiframe.dcm')['ID'] |
| 307 self.assertEqual(76, len(DoGet(_REMOTE, '/instances/%s/frames' % i))) | |
| 308 | |
| 309 im = GetImage(_REMOTE, '/instances/%s/frames/0/preview' % i) | |
| 310 self.assertEqual("L", im.mode) | |
| 311 self.assertEqual(512, im.size[0]) | |
| 312 self.assertEqual(512, im.size[1]) | |
| 313 | |
| 314 DoGet(_REMOTE, '/instances/%s/frames/0/image-uint8' % i) | |
| 315 DoGet(_REMOTE, '/instances/%s/frames/0/image-uint16' % i) | |
| 316 DoGet(_REMOTE, '/instances/%s/frames/75/preview' % i) | |
| 317 self.assertRaises(Exception, lambda: DoGet(_REMOTE, '/instances/%s/frames/aaa/preview' % i)) | |
| 318 self.assertRaises(Exception, lambda: DoGet(_REMOTE, '/instances/%s/frames/76/preview' % i)) | |
| 319 | |
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320 |
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321 def test_changes(self): |
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322 # Check emptiness |
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323 c = DoGet(_REMOTE, '/changes') |
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324 self.assertEqual(0, len(c['Changes'])) |
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325 self.assertEqual(0, c['Last']) |
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326 self.assertTrue(c['Done']) |
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327 c = DoGet(_REMOTE, '/changes?last') |
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328 self.assertEqual(0, len(c['Changes'])) |
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329 self.assertEqual(0, c['Last']) |
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330 self.assertTrue(c['Done']) |
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331 |
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332 # Add 1 instance |
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333 i = UploadInstance(_REMOTE, 'Brainix/Flair/IM-0001-0001.dcm')['ID'] |
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334 c = DoGet(_REMOTE, '/changes') |
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335 begin = c['Last'] |
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336 self.assertEqual(4, len(c['Changes'])) |
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337 self.assertTrue(c['Done']) |
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338 self.assertEqual(c['Changes'][-1]['Seq'], c['Last']) |
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339 |
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340 c = DoGet(_REMOTE, '/changes?last') |
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341 self.assertEqual(1, len(c['Changes'])) |
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342 self.assertEqual(begin, c['Last']) |
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343 self.assertTrue(c['Done']) |
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344 c = DoGet(_REMOTE, '/changes?limit=1&since=' + str(begin - 1)) |
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345 self.assertEqual(1, len(c['Changes'])) |
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346 self.assertEqual(begin, c['Last']) |
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347 self.assertTrue(c['Done']) |
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348 c = DoGet(_REMOTE, '/changes?limit=1&since=' + str(begin - 2)) |
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349 self.assertEqual(1, len(c['Changes'])) |
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350 self.assertEqual(begin - 1, c['Last']) |
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351 self.assertFalse(c['Done']) |
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352 c = DoGet(_REMOTE, '/changes?limit=1&since=' + str(begin - 3)) |
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353 self.assertEqual(1, len(c['Changes'])) |
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354 self.assertEqual(begin - 2, c['Last']) |
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355 self.assertFalse(c['Done']) |
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356 |
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357 UploadFolder(_REMOTE, 'Knee/T1') |
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358 UploadFolder(_REMOTE, 'Knee/T2') |
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359 since = begin |
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360 countPatients = 0 |
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361 countStudies = 0 |
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362 countSeries = 0 |
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363 countInstances = 0 |
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364 completed = 0 |
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365 while True: |
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366 c = DoGet(_REMOTE, '/changes', { 'since' : since, 'limit' : 3 }) |
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367 since = c['Last'] |
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368 for i in c['Changes']: |
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369 if i['ResourceType'] == 'Instance': |
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370 countInstances += 1 |
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371 if i['ResourceType'] == 'Patient': |
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372 countPatients += 1 |
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373 if i['ResourceType'] == 'Study': |
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374 countStudies += 1 |
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375 if i['ResourceType'] == 'Series': |
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376 countSeries += 1 |
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377 if i['ChangeType'] == 'NewInstance': |
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378 countInstances += 1 |
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379 if i['ChangeType'] == 'NewPatient': |
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380 countPatients += 1 |
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381 if i['ChangeType'] == 'NewStudy': |
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382 countStudies += 1 |
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383 if i['ChangeType'] == 'NewSeries': |
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384 countSeries += 1 |
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385 if i['ChangeType'] == 'CompletedSeries': |
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386 completed += 1 |
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387 self.assertTrue('ID' in i) |
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388 self.assertTrue('Path' in i) |
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389 self.assertTrue('Seq' in i) |
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390 if c['Done']: |
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391 break |
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392 |
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393 self.assertEqual(2 * 50, countInstances) |
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394 self.assertEqual(2 * 1, countPatients) |
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395 self.assertEqual(2 * 1, countStudies) |
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396 self.assertEqual(2 * 2, countSeries) |
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397 self.assertEqual(0, completed) |
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398 |
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399 |
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400 def test_archive(self): |
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401 UploadInstance(_REMOTE, 'Knee/T1/IM-0001-0001.dcm') |
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402 UploadInstance(_REMOTE, 'Knee/T2/IM-0001-0001.dcm') |
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403 |
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404 z = GetArchive(_REMOTE, '/patients/%s/archive' % DoGet(_REMOTE, '/patients')[0]) |
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405 self.assertEqual(2, len(z.namelist())) |
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406 |
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407 z = GetArchive(_REMOTE, '/studies/%s/archive' % DoGet(_REMOTE, '/studies')[0]) |
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408 self.assertEqual(2, len(z.namelist())) |
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409 |
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410 z = GetArchive(_REMOTE, '/series/%s/archive' % DoGet(_REMOTE, '/series')[0]) |
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411 self.assertEqual(1, len(z.namelist())) |
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412 |
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413 UploadInstance(_REMOTE, 'Brainix/Flair/IM-0001-0001.dcm') |
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414 |
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415 z = GetArchive(_REMOTE, '/patients/%s/archive' % DoGet(_REMOTE, '/patients')[0]) |
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416 self.assertEqual(2, len(z.namelist())) |
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417 |
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418 |
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419 def test_media_archive(self): |
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420 UploadInstance(_REMOTE, 'Knee/T1/IM-0001-0001.dcm') |
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421 UploadInstance(_REMOTE, 'Knee/T2/IM-0001-0001.dcm') |
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422 |
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423 z = GetArchive(_REMOTE, '/patients/%s/media' % DoGet(_REMOTE, '/patients')[0]) |
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424 self.assertEqual(3, len(z.namelist())) |
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425 self.assertTrue('IMAGES/IM0' in z.namelist()) |
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426 self.assertTrue('IMAGES/IM1' in z.namelist()) |
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427 self.assertTrue('DICOMDIR' in z.namelist()) |
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428 |
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429 try: |
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430 os.remove('/tmp/DICOMDIR') |
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431 except: |
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432 # The file does not exist |
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433 pass |
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434 |
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435 z.extract('DICOMDIR', '/tmp') |
| 45 | 436 a = subprocess.check_output([ FindExecutable('dciodvfy'), '/tmp/DICOMDIR' ], |
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437 stderr = subprocess.STDOUT).split('\n') |
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438 self.assertEqual(3, len(a)) |
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439 self.assertTrue(a[0].startswith('Warning')) |
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440 self.assertEqual('BasicDirectory', a[1]) |
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441 self.assertEqual('', a[2]) |
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442 |
| 45 | 443 a = subprocess.check_output([ FindExecutable('dcentvfy'), '/tmp/DICOMDIR' ], |
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444 stderr = subprocess.STDOUT).split('\n') |
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445 self.assertEqual(1, len(a)) |
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446 self.assertEqual('', a[0]) |
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447 |
| 45 | 448 a = subprocess.check_output([ FindExecutable('dcm2xml'), '/tmp/DICOMDIR' ]) |
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449 self.assertTrue(re.search('1.3.46.670589.11.17521.5.0.3124.2008081908590448738', a) != None) |
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450 self.assertTrue(re.search('1.3.46.670589.11.17521.5.0.3124.2008081909113806560', a) != None) |
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451 |
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452 os.remove('/tmp/DICOMDIR') |
| 10 | 453 |
| 454 | |
| 455 def test_protection(self): | |
| 456 UploadInstance(_REMOTE, 'Knee/T1/IM-0001-0001.dcm') | |
| 457 UploadInstance(_REMOTE, 'Brainix/Flair/IM-0001-0001.dcm') | |
| 458 self.assertEqual(2, len(DoGet(_REMOTE, '/patients'))) | |
| 459 a = DoGet(_REMOTE, '/patients')[0] | |
| 460 b = DoGet(_REMOTE, '/patients')[1] | |
| 461 self.assertEqual(0, DoGet(_REMOTE, '/patients/%s/protected' % a)) | |
| 462 DoPut(_REMOTE, '/patients/%s/protected' % a, '0', 'text/plain') | |
| 463 self.assertEqual(0, DoGet(_REMOTE, '/patients/%s/protected' % a)) | |
| 464 DoPut(_REMOTE, '/patients/%s/protected' % a, '1', 'text/plain') | |
| 465 self.assertEqual(1, DoGet(_REMOTE, '/patients/%s/protected' % a)) | |
| 466 DoPut(_REMOTE, '/patients/%s/protected' % a, '0', 'text/plain') | |
| 467 self.assertEqual(0, DoGet(_REMOTE, '/patients/%s/protected' % a)) | |
| 468 | |
| 469 | |
| 12 | 470 def test_raw_tags(self): |
| 10 | 471 i = UploadInstance(_REMOTE, 'PrivateTags.dcm')['ID'] |
| 472 | |
| 473 dicom = DoGet(_REMOTE, '/instances/%s/file' % i) | |
| 474 self.assertEqual('1a7c56cb02d6e742cc9c856a8ac182e3', ComputeMD5(dicom)) | |
| 475 | |
| 476 s = '/instances/%s/content/' % i | |
| 477 | |
| 478 self.assertEqual('LOGIQBOOK', DoGet(_REMOTE, s + '0008-1010').strip()) | |
| 479 self.assertRaises(Exception, lambda: DoGet(_REMOTE, s + '0008-1011')) | |
| 480 | |
| 481 self.assertEqual('Abdomen', DoGet(_REMOTE, s + '7fe1-1001/0/7fe1-1008/0/7fe1-1057').strip()) | |
| 482 self.assertEqual('cla_3c', DoGet(_REMOTE, s + '7fe1-1001/0/7fe1-1008/8/7fe1-1057').strip()) | |
| 483 | |
| 484 UploadInstance(_REMOTE, 'Brainix/Epi/IM-0001-0001.dcm') | |
| 485 UploadInstance(_REMOTE, 'Brainix/Flair/IM-0001-0001.dcm') | |
| 486 UploadInstance(_REMOTE, 'Knee/T1/IM-0001-0001.dcm') | |
| 487 UploadInstance(_REMOTE, 'Knee/T2/IM-0001-0001.dcm') | |
| 488 | |
| 489 for i in DoGet(_REMOTE, '/instances'): | |
| 490 aid = DoGet(_REMOTE, '/instances/%s' % i)['MainDicomTags']['SOPInstanceUID'] | |
| 491 self.assertEqual(aid, DoGet(_REMOTE, '/instances/%s/content/0008-0018' % i).replace(chr(0), '')) | |
| 492 | |
| 493 | |
| 494 def test_raw_tags_mdn(self): | |
| 495 # Bug reported by Cyril Paulus | |
| 496 i = UploadInstance(_REMOTE, 'PrivateMDNTags.dcm')['ID'] | |
| 497 self.assertAlmostEqual(0.000027, DoGet(_REMOTE, '/instances/%s/content/7053-1000' % i)) | |
| 498 | |
| 499 | |
| 500 def test_modify_instance(self): | |
| 501 i = UploadInstance(_REMOTE, 'PrivateTags.dcm')['ID'] | |
| 502 modified = DoPost(_REMOTE, '/instances/%s/modify' % i, | |
| 503 json.dumps({ | |
| 504 "Replace" : { | |
| 505 "PatientName" : "hello", | |
| 506 #"PatientID" : "world" | |
| 507 }, | |
| 508 "Remove" : [ "StationName" ], | |
| 509 "RemovePrivateTags" : None | |
| 510 }), | |
| 511 'application/json') | |
| 512 j = DoPost(_REMOTE, '/instances', modified, 'application/dicom')['ID'] | |
| 513 | |
| 514 self.assertNotEqual('hello', DoGet(_REMOTE, '/instances/%s/content/0010-0010' % i).strip()) | |
| 515 #self.assertNotEqual('world', DoGet(_REMOTE, '/instances/%s/content/0010-0020' % i).strip()) | |
| 516 self.assertEqual('LOGIQBOOK', DoGet(_REMOTE, '/instances/%s/content/0008-1010' % i).strip()) | |
| 517 DoGet(_REMOTE, '/instances/%s/content/6003-1010' % i) # Some private tag | |
| 518 | |
| 519 self.assertEqual('hello', DoGet(_REMOTE, '/instances/%s/content/0010-0010' % j).strip()) | |
| 520 #self.assertEqual('world', DoGet(_REMOTE, '/instances/%s/content/0010-0020' % j).strip()) | |
| 521 self.assertRaises(Exception, lambda: DoGet(_REMOTE, '/instances/%s/content/0008-1010' % j)) | |
| 522 self.assertRaises(Exception, lambda: DoGet(_REMOTE, '/instances/%s/content/6003-1010' % j)) | |
| 523 | |
| 524 | |
| 525 def test_modify_series(self): | |
| 526 # Upload 4 images from the same series | |
| 527 for i in range(4): | |
| 528 UploadInstance(_REMOTE, 'Brainix/Epi/IM-0001-000%d.dcm' % (i + 1)) | |
| 529 | |
| 530 origSeries = DoGet(_REMOTE, '/series')[0] | |
| 531 newSeries = DoPost(_REMOTE, '/series/%s/modify' % origSeries, | |
| 532 '{"Replace":{"PatientName":"Jodogne"}}', | |
| 533 'application/json')['ID'] | |
| 534 | |
| 535 self.assertEqual(origSeries, DoGet(_REMOTE, '/series/%s' % newSeries)['ModifiedFrom']) | |
| 536 instances = DoGet(_REMOTE, '/series/%s' % newSeries)['Instances'] | |
| 537 self.assertEqual(4, len(instances)) | |
| 538 for i in instances: | |
| 539 j = DoGet(_REMOTE, '/instances/%s' % i)['ModifiedFrom'] | |
| 540 self.assertEqual(newSeries, DoGet(_REMOTE, '/instances/%s' % i)['ParentSeries']) | |
| 541 self.assertEqual(origSeries, DoGet(_REMOTE, '/instances/%s' % j)['ParentSeries']) | |
| 542 | |
| 543 self.assertEqual('Jodogne', DoGet(_REMOTE, '/instances/%s/content/0010-0010' % i).strip()) | |
| 544 self.assertNotEqual('Jodogne', DoGet(_REMOTE, '/instances/%s/content/0010-0010' % j).strip()) | |
| 545 | |
| 546 | |
| 547 def test_modify_study(self): | |
| 548 # Upload 4 images from the 2 series of the same study | |
| 549 for i in range(4): | |
| 550 UploadInstance(_REMOTE, 'Brainix/Flair/IM-0001-000%d.dcm' % (i + 1)) | |
| 551 UploadInstance(_REMOTE, 'Brainix/Epi/IM-0001-000%d.dcm' % (i + 1)) | |
| 552 | |
| 553 origStudy = DoGet(_REMOTE, '/studies')[0] | |
| 554 newStudy = DoPost(_REMOTE, '/studies/%s/modify' % origStudy, | |
| 555 '{"Replace":{"PatientName":"Jodogne"}}', | |
| 556 'application/json')['ID'] | |
| 557 | |
| 558 self.assertEqual(origStudy, DoGet(_REMOTE, '/studies/%s' % newStudy)['ModifiedFrom']) | |
| 559 series = DoGet(_REMOTE, '/studies/%s' % newStudy)['Series'] | |
| 560 self.assertEqual(2, len(series)) | |
| 561 for s in series: | |
| 562 ss = DoGet(_REMOTE, '/series/%s' % s)['ModifiedFrom'] | |
| 563 self.assertEqual(newStudy, DoGet(_REMOTE, '/series/%s' % s)['ParentStudy']) | |
| 564 self.assertEqual(origStudy, DoGet(_REMOTE, '/series/%s' % ss)['ParentStudy']) | |
| 565 | |
| 566 instances = DoGet(_REMOTE, '/series/%s' % s)['Instances'] | |
| 567 for i in instances: | |
| 568 j = DoGet(_REMOTE, '/instances/%s' % i)['ModifiedFrom'] | |
| 569 self.assertEqual(s, DoGet(_REMOTE, '/instances/%s' % i)['ParentSeries']) | |
| 570 self.assertEqual(ss, DoGet(_REMOTE, '/instances/%s' % j)['ParentSeries']) | |
| 571 | |
| 572 self.assertEqual('Jodogne', DoGet(_REMOTE, '/instances/%s/content/0010-0010' % i).strip()) | |
| 573 self.assertNotEqual('Jodogne', DoGet(_REMOTE, '/instances/%s/content/0010-0010' % j).strip()) | |
| 574 | |
| 575 | |
| 576 def test_anonymize_series(self): | |
| 577 # Upload 4 images from the same series | |
| 578 for i in range(4): | |
| 579 UploadInstance(_REMOTE, 'Brainix/Epi/IM-0001-000%d.dcm' % (i + 1)) | |
| 580 | |
| 581 origSeries = DoGet(_REMOTE, '/series')[0] | |
| 582 newSeries = DoPost(_REMOTE, '/series/%s/anonymize' % origSeries, | |
| 583 '{}', | |
| 584 'application/json')['ID'] | |
| 585 | |
| 586 self.assertEqual(origSeries, DoGet(_REMOTE, '/series/%s' % newSeries)['AnonymizedFrom']) | |
| 587 instances = DoGet(_REMOTE, '/series/%s' % newSeries)['Instances'] | |
| 588 self.assertEqual(4, len(instances)) | |
| 589 for i in instances: | |
| 590 j = DoGet(_REMOTE, '/instances/%s' % i)['AnonymizedFrom'] | |
| 591 self.assertEqual(newSeries, DoGet(_REMOTE, '/instances/%s' % i)['ParentSeries']) | |
| 592 self.assertEqual(origSeries, DoGet(_REMOTE, '/instances/%s' % j)['ParentSeries']) | |
| 593 | |
| 594 DoGet(_REMOTE, '/instances/%s/content/0008-1010' % j) | |
| 595 self.assertRaises(Exception, lambda: DoGet(_REMOTE, '/instances/%s/content/0008-1010' % i)) | |
| 596 | |
| 597 | |
| 598 def test_anonymize_study(self): | |
| 599 # Upload 4 images from the 2 series of the same study | |
| 600 for i in range(4): | |
| 601 UploadInstance(_REMOTE, 'Brainix/Flair/IM-0001-000%d.dcm' % (i + 1)) | |
| 602 UploadInstance(_REMOTE, 'Brainix/Epi/IM-0001-000%d.dcm' % (i + 1)) | |
| 603 | |
| 604 origStudy = DoGet(_REMOTE, '/studies')[0] | |
| 605 newStudy = DoPost(_REMOTE,'/studies/%s/anonymize' % origStudy, | |
| 606 '{"Replace":{"PatientName":"Jodogne"}}', | |
| 607 'application/json')['ID'] | |
| 608 | |
| 609 self.assertEqual(origStudy, DoGet(_REMOTE, '/studies/%s' % newStudy)['AnonymizedFrom']) | |
| 610 series = DoGet(_REMOTE, '/studies/%s' % newStudy)['Series'] | |
| 611 self.assertEqual(2, len(series)) | |
| 612 for s in series: | |
| 613 ss = DoGet(_REMOTE, '/series/%s' % s)['AnonymizedFrom'] | |
| 614 self.assertEqual(newStudy, DoGet(_REMOTE, '/series/%s' % s)['ParentStudy']) | |
| 615 self.assertEqual(origStudy, DoGet(_REMOTE, '/series/%s' % ss)['ParentStudy']) | |
| 616 | |
| 617 instances = DoGet(_REMOTE, '/series/%s' % s)['Instances'] | |
| 618 for i in instances: | |
| 619 j = DoGet(_REMOTE, '/instances/%s' % i)['AnonymizedFrom'] | |
| 620 self.assertEqual(s, DoGet(_REMOTE, '/instances/%s' % i)['ParentSeries']) | |
| 621 self.assertEqual(ss, DoGet(_REMOTE, '/instances/%s' % j)['ParentSeries']) | |
| 622 | |
| 623 self.assertEqual('Jodogne', DoGet(_REMOTE, '/instances/%s/content/0010-0010' % i).strip()) | |
| 624 self.assertNotEqual('Jodogne', DoGet(_REMOTE, '/instances/%s/content/0010-0010' % j).strip()) | |
| 11 | 625 |
| 626 | |
| 627 | |
| 628 def test_storescu(self): | |
| 629 # Check emptiness | |
| 630 e = DoGet(_REMOTE, '/exports') | |
| 631 self.assertEqual(0, len(e['Exports'])) | |
| 632 self.assertEqual(0, e['Last']) | |
| 633 self.assertTrue(e['Done']) | |
| 634 e = DoGet(_REMOTE, '/exports?last') | |
| 635 self.assertEqual(0, len(e['Exports'])) | |
| 636 self.assertEqual(0, e['Last']) | |
| 637 self.assertTrue(e['Done']) | |
| 638 | |
| 639 # Add 1 instance | |
| 640 i = UploadInstance(_REMOTE, 'DummyCT.dcm')['ID'] | |
| 641 self.assertEqual(0, len(DoGet(_LOCAL, '/patients'))) | |
| 642 | |
| 643 # Export the instance | |
| 644 j = DoPost(_REMOTE, '/modalities/orthanctest/store', str(i), 'text/plain') # instance | |
| 645 self.assertEqual(1, len(DoGet(_LOCAL, '/patients'))) | |
| 646 self.assertEqual(1, len(DoGet(_LOCAL, '/studies'))) | |
| 647 self.assertEqual(1, len(DoGet(_LOCAL, '/series'))) | |
| 648 self.assertEqual(1, len(DoGet(_LOCAL, '/instances'))) | |
| 649 | |
| 650 e = DoGet(_REMOTE, '/exports') | |
| 651 self.assertEqual(1, len(e['Exports'])) | |
| 652 self.assertTrue(e['Done']) | |
| 653 self.assertEqual(e['Exports'][-1]['Seq'], e['Last']) | |
| 654 e = DoGet(_REMOTE, '/exports?limit=1') | |
| 655 self.assertEqual(1, len(e['Exports'])) | |
| 656 self.assertTrue(e['Done']) | |
| 657 self.assertEqual(e['Exports'][-1]['Seq'], e['Last']) | |
| 658 e = DoGet(_REMOTE, '/exports?last') | |
| 659 self.assertEqual(1, len(e['Exports'])) | |
| 660 self.assertTrue(e['Done']) | |
| 661 self.assertEqual(e['Exports'][-1]['Seq'], e['Last']) | |
| 662 seqInstance = e['Last'] | |
| 663 | |
| 664 # Export the series | |
| 665 j = DoPost(_REMOTE, '/modalities/orthanctest/store', 'f2635388-f01d497a-15f7c06b-ad7dba06-c4c599fe', 'text/plain') | |
| 666 | |
| 667 e = DoGet(_REMOTE, '/exports') | |
| 668 self.assertEqual(2, len(e['Exports'])) | |
| 669 self.assertTrue(e['Done']) | |
| 670 self.assertEqual(e['Exports'][-1]['Seq'], e['Last']) | |
| 671 seqSeries = e['Last'] | |
| 672 self.assertNotEqual(seqInstance, seqSeries) | |
| 673 e = DoGet(_REMOTE, '/exports?limit=1&since=0') | |
| 674 self.assertEqual(1, len(e['Exports'])) | |
| 675 self.assertFalse(e['Done']) | |
| 676 self.assertEqual(e['Exports'][-1]['Seq'], seqInstance) | |
| 677 e = DoGet(_REMOTE, '/exports?limit=1&since=' + str(seqInstance)) | |
| 678 self.assertEqual(1, len(e['Exports'])) | |
| 679 self.assertTrue(e['Done']) | |
| 680 self.assertEqual(e['Exports'][-1]['Seq'], seqSeries) | |
| 681 e = DoGet(_REMOTE, '/exports?last') | |
| 682 self.assertEqual(1, len(e['Exports'])) | |
| 683 self.assertTrue(e['Done']) | |
| 684 self.assertEqual(e['Exports'][-1]['Seq'], seqSeries) | |
| 685 | |
| 686 # Export the study | |
| 687 j = DoPost(_REMOTE, '/modalities/orthanctest/store', 'b9c08539-26f93bde-c81ab0d7-bffaf2cb-a4d0bdd0', 'text/plain') | |
| 688 seqStudy = DoGet(_REMOTE, '/exports')['Last'] | |
| 689 | |
| 690 # Export the patient | |
| 691 j = DoPost(_REMOTE, '/modalities/orthanctest/store', '6816cb19-844d5aee-85245eba-28e841e6-2414fae2', 'text/plain') | |
| 692 self.assertEqual(1, len(DoGet(_LOCAL, '/patients'))) | |
| 693 self.assertEqual(1, len(DoGet(_LOCAL, '/studies'))) | |
| 694 self.assertEqual(1, len(DoGet(_LOCAL, '/series'))) | |
| 695 self.assertEqual(1, len(DoGet(_LOCAL, '/instances'))) | |
| 696 | |
| 697 e = DoGet(_REMOTE, '/exports') | |
| 698 self.assertEqual(4, len(e['Exports'])) | |
| 699 self.assertTrue(e['Done']) | |
| 700 self.assertEqual(e['Exports'][-1]['Seq'], e['Last']) | |
| 701 seqPatient = e['Last'] | |
| 702 self.assertNotEqual(seqInstance, seqSeries) | |
| 703 self.assertNotEqual(seqSeries, seqStudy) | |
| 704 self.assertNotEqual(seqStudy, seqPatient) | |
| 705 self.assertTrue(seqInstance < seqSeries) | |
| 706 self.assertTrue(seqSeries < seqStudy) | |
| 707 self.assertTrue(seqStudy < seqPatient) | |
| 708 e = DoGet(_REMOTE, '/exports?limit=1&since=0') | |
| 709 self.assertEqual(1, len(e['Exports'])) | |
| 710 self.assertFalse(e['Done']) | |
| 711 self.assertEqual(e['Exports'][-1]['Seq'], seqInstance) | |
| 712 e = DoGet(_REMOTE, '/exports?limit=1&since=' + str(seqInstance)) | |
| 713 self.assertEqual(1, len(e['Exports'])) | |
| 714 self.assertFalse(e['Done']) | |
| 715 self.assertEqual(e['Exports'][-1]['Seq'], seqSeries) | |
| 716 e = DoGet(_REMOTE, '/exports?limit=1&since=' + str(seqSeries)) | |
| 717 self.assertEqual(1, len(e['Exports'])) | |
| 718 self.assertFalse(e['Done']) | |
| 719 self.assertEqual(e['Exports'][-1]['Seq'], seqStudy) | |
| 720 e = DoGet(_REMOTE, '/exports?limit=1&since=' + str(seqStudy)) | |
| 721 self.assertEqual(1, len(e['Exports'])) | |
| 722 self.assertTrue(e['Done']) | |
| 723 self.assertEqual(e['Exports'][-1]['Seq'], seqPatient) | |
| 724 e = DoGet(_REMOTE, '/exports?last') | |
| 725 self.assertEqual(1, len(e['Exports'])) | |
| 726 self.assertTrue(e['Done']) | |
| 727 self.assertEqual(e['Exports'][-1]['Seq'], seqPatient) | |
| 728 | |
| 729 | |
| 730 # Check the content of the logged information | |
| 731 e = DoGet(_REMOTE, '/exports')['Exports'] | |
| 732 | |
| 733 if 'PatientID' in e[0]: | |
| 734 # Since Orthanc 0.8.6 | |
| 735 patient = 'PatientID' | |
| 736 study = 'StudyInstanceUID' | |
| 737 series = 'SeriesInstanceUID' | |
| 738 instance = 'SOPInstanceUID' | |
| 739 else: | |
| 740 # Up to Orthanc 0.8.5 | |
| 741 patient = 'PatientId' | |
| 742 study = 'StudyInstanceUid' | |
| 743 series = 'SeriesInstanceUid' | |
| 744 instance = 'SopInstanceUid' | |
| 745 | |
| 746 for k in range(4): | |
| 747 self.assertTrue('Date' in e[k]) | |
| 748 self.assertTrue('Seq' in e[k]) | |
| 749 self.assertEqual('orthanctest', e[k]['RemoteModality']) | |
| 750 | |
| 751 self.assertEqual(10, len(e[0])) | |
| 752 self.assertEqual('Instance', e[0]['ResourceType']) | |
| 753 self.assertEqual('66a662ce-7430e543-bad44d47-0dc5a943-ec7a538d', e[0]['ID']) | |
| 754 self.assertEqual('/instances/66a662ce-7430e543-bad44d47-0dc5a943-ec7a538d', e[0]['Path']) | |
| 755 self.assertEqual('1.2.840.113619.2.176.2025.1499492.7040.1171286242.109', e[0][instance]) | |
| 756 self.assertEqual('1.2.840.113619.2.176.2025.1499492.7391.1171285944.394', e[0][series]) | |
| 757 self.assertEqual('1.2.840.113619.2.176.2025.1499492.7391.1171285944.390', e[0][study]) | |
| 758 self.assertEqual('ozp00SjY2xG', e[0][patient]) | |
| 759 | |
| 760 self.assertEqual(9, len(e[1])) | |
| 761 self.assertEqual('Series', e[1]['ResourceType']) | |
| 762 self.assertEqual('f2635388-f01d497a-15f7c06b-ad7dba06-c4c599fe', e[1]['ID']) | |
| 763 self.assertEqual('/series/f2635388-f01d497a-15f7c06b-ad7dba06-c4c599fe', e[1]['Path']) | |
| 764 self.assertEqual('1.2.840.113619.2.176.2025.1499492.7391.1171285944.394', e[1][series]) | |
| 765 self.assertEqual('1.2.840.113619.2.176.2025.1499492.7391.1171285944.390', e[1][study]) | |
| 766 self.assertEqual('ozp00SjY2xG', e[1][patient]) | |
| 767 | |
| 768 self.assertEqual(8, len(e[2])) | |
| 769 self.assertEqual('Study', e[2]['ResourceType']) | |
| 770 self.assertEqual('b9c08539-26f93bde-c81ab0d7-bffaf2cb-a4d0bdd0', e[2]['ID']) | |
| 771 self.assertEqual('/studies/b9c08539-26f93bde-c81ab0d7-bffaf2cb-a4d0bdd0', e[2]['Path']) | |
| 772 self.assertEqual('1.2.840.113619.2.176.2025.1499492.7391.1171285944.390', e[2][study]) | |
| 773 self.assertEqual('ozp00SjY2xG', e[2][patient]) | |
| 774 | |
| 775 self.assertEqual(7, len(e[3])) | |
| 776 self.assertEqual('Patient', e[3]['ResourceType']) | |
| 777 self.assertEqual('6816cb19-844d5aee-85245eba-28e841e6-2414fae2', e[3]['ID']) | |
| 778 self.assertEqual('/patients/6816cb19-844d5aee-85245eba-28e841e6-2414fae2', e[3]['Path']) | |
| 779 self.assertEqual('ozp00SjY2xG', e[3][patient]) | |
| 780 | |
| 781 DropOrthanc(_REMOTE) | |
| 782 self.assertEqual(0, len(DoGet(_REMOTE, '/exports')['Exports'])) | |
| 783 | |
| 784 | |
| 785 def test_store_peer(self): | |
| 786 self.assertEqual(0, len(DoGet(_LOCAL, '/exports')['Exports'])) | |
| 787 self.assertEqual(0, len(DoGet(_REMOTE, '/exports')['Exports'])) | |
| 788 | |
| 789 i = UploadInstance(_REMOTE, 'DummyCT.dcm')['ID'] | |
| 790 self.assertEqual(0, len(DoGet(_LOCAL, '/patients'))) | |
| 791 self.assertEqual(1, len(DoGet(_REMOTE, '/patients'))) | |
| 792 | |
| 793 j = DoPost(_REMOTE, '/peers/peer/store', str(i), 'text/plain') | |
| 794 self.assertEqual(1, len(DoGet(_LOCAL, '/patients'))) | |
| 795 self.assertEqual(1, len(DoGet(_REMOTE, '/patients'))) | |
| 796 | |
| 797 self.assertEqual(1, len(DoGet(_REMOTE, '/exports')['Exports'])) | |
| 798 | |
| 799 DropOrthanc(_REMOTE) | |
| 800 self.assertEqual(0, len(DoGet(_REMOTE, '/exports')['Exports'])) | |
| 801 | |
| 802 | |
| 803 def test_bulk_storescu(self): | |
| 804 self.assertEqual(0, len(DoGet(_LOCAL, '/patients'))) | |
| 805 | |
| 806 a = UploadInstance(_REMOTE, 'Knee/T1/IM-0001-0001.dcm') | |
| 807 b = UploadInstance(_REMOTE, 'Knee/T2/IM-0001-0001.dcm') | |
| 808 | |
| 809 j = DoPost(_REMOTE, '/modalities/orthanctest/store', [ a['ID'], b['ID'] ], 'application/json') | |
| 810 self.assertEqual(2, len(DoGet(_LOCAL, '/instances'))) | |
| 811 | |
| 812 DropOrthanc(_LOCAL) | |
| 813 | |
| 814 # Send using patient's UUID | |
| 815 self.assertEqual(0, len(DoGet(_LOCAL, '/instances'))) | |
| 816 j = DoPost(_REMOTE, '/modalities/orthanctest/store', | |
| 817 [ 'ca29faea-b6a0e17f-067743a1-8b778011-a48b2a17' ], 'application/json') | |
| 818 self.assertEqual(2, len(DoGet(_LOCAL, '/instances'))) | |
| 819 | |
| 820 | |
| 821 def test_color(self): | |
| 822 i = UploadInstance(_REMOTE, 'ColorTestMalaterre.dcm')['ID'] | |
| 823 im = GetImage(_REMOTE, '/instances/%s/preview' % i) | |
| 824 self.assertEqual("RGB", im.mode) | |
| 825 self.assertEqual(41, im.size[0]) | |
| 826 self.assertEqual(41, im.size[1]) | |
| 827 | |
| 828 # http://effbot.org/zone/pil-comparing-images.htm | |
| 13 | 829 truth = Image.open(GetDatabasePath('ColorTestMalaterre.png')) |
| 11 | 830 self.assertTrue(ImageChops.difference(im, truth).getbbox() is None) |
| 831 | |
| 832 | |
| 12 | 833 def test_faking_ruby_put(self): |
| 834 UploadInstance(_REMOTE, 'Knee/T1/IM-0001-0001.dcm') | |
| 835 UploadInstance(_REMOTE, 'Brainix/Flair/IM-0001-0001.dcm') | |
| 836 self.assertEqual(2, len(DoGet(_REMOTE, '/patients'))) | |
| 837 a = DoGet(_REMOTE, '/patients')[0] | |
| 838 b = DoGet(_REMOTE, '/patients')[1] | |
| 839 self.assertEqual(0, DoGet(_REMOTE, '/patients/%s/protected' % a)) | |
| 840 DoGet(_REMOTE, '/patients/%s/protected' % a, data = { '_method' : 'PUT' }, body = '0') | |
| 841 self.assertEqual(0, DoGet(_REMOTE, '/patients/%s/protected' % a)) | |
| 842 DoGet(_REMOTE, '/patients/%s/protected' % a, data = { '_method' : 'PUT' }, body = '1') | |
| 843 self.assertEqual(1, DoGet(_REMOTE, '/patients/%s/protected' % a)) | |
| 844 DoGet(_REMOTE, '/patients/%s/protected' % a, data = { '_method' : 'PUT' }, body = '0') | |
| 845 self.assertEqual(0, DoGet(_REMOTE, '/patients/%s/protected' % a)) | |
| 846 | |
| 847 | |
| 848 def test_faking_ruby_delete(self): | |
| 849 UploadInstance(_REMOTE, 'Knee/T1/IM-0001-0001.dcm') | |
| 850 UploadInstance(_REMOTE, 'Brainix/Flair/IM-0001-0001.dcm') | |
| 851 self.assertEqual(2, len(DoGet(_REMOTE, '/patients'))) | |
| 852 a = DoGet(_REMOTE, '/patients')[0] | |
| 853 b = DoGet(_REMOTE, '/patients')[1] | |
| 854 DoGet(_REMOTE, '/patients/%s' % a, data = { '_method' : 'DELETE' }) | |
| 855 self.assertEqual(1, len(DoGet(_REMOTE, '/patients'))) | |
| 856 DoGet(_REMOTE, '/patients/%s' % b, data = { '_method' : 'DELETE' }) | |
| 857 self.assertEqual(0, len(DoGet(_REMOTE, '/patients'))) | |
| 858 | |
| 859 | |
| 860 def test_faking_google_put(self): | |
| 861 UploadInstance(_REMOTE, 'Knee/T1/IM-0001-0001.dcm') | |
| 862 UploadInstance(_REMOTE, 'Brainix/Flair/IM-0001-0001.dcm') | |
| 863 self.assertEqual(2, len(DoGet(_REMOTE, '/patients'))) | |
| 864 a = DoGet(_REMOTE, '/patients')[0] | |
| 865 b = DoGet(_REMOTE, '/patients')[1] | |
| 866 self.assertEqual(0, DoGet(_REMOTE, '/patients/%s/protected' % a)) | |
| 867 DoPost(_REMOTE, '/patients/%s/protected' % a, headers = { 'X-HTTP-Method-Override' : 'PUT' }, data = '0') | |
| 868 self.assertEqual(0, DoGet(_REMOTE, '/patients/%s/protected' % a)) | |
| 869 DoPost(_REMOTE, '/patients/%s/protected' % a, headers = { 'X-HTTP-Method-Override' : 'PUT' }, data = '1') | |
| 870 self.assertEqual(1, DoGet(_REMOTE, '/patients/%s/protected' % a)) | |
| 871 DoPost(_REMOTE, '/patients/%s/protected' % a, headers = { 'X-HTTP-Method-Override' : 'PUT' }, data = '0') | |
| 872 self.assertEqual(0, DoGet(_REMOTE, '/patients/%s/protected' % a)) | |
| 873 | |
| 874 | |
| 875 def test_faking_google_delete(self): | |
| 876 UploadInstance(_REMOTE, 'Knee/T1/IM-0001-0001.dcm') | |
| 877 UploadInstance(_REMOTE, 'Brainix/Flair/IM-0001-0001.dcm') | |
| 878 self.assertEqual(2, len(DoGet(_REMOTE, '/patients'))) | |
| 879 a = DoGet(_REMOTE, '/patients')[0] | |
| 880 b = DoGet(_REMOTE, '/patients')[1] | |
| 881 DoPost(_REMOTE, '/patients/%s' % a, headers = { 'X-HTTP-Method-Override' : 'DELETE' }) | |
| 882 self.assertEqual(1, len(DoGet(_REMOTE, '/patients'))) | |
| 883 DoPost(_REMOTE, '/patients/%s' % b, headers = { 'X-HTTP-Method-Override' : 'DELETE' }) | |
| 884 self.assertEqual(0, len(DoGet(_REMOTE, '/patients'))) | |
| 885 | |
| 886 | |
| 887 def test_lua(self): | |
| 888 self.assertEqual(42, DoPost(_REMOTE, '/tools/execute-script', 'print(42)')) | |
| 889 self.assertTrue(IsDefinedInLua(_REMOTE, 'PrintRecursive')) | |
| 890 self.assertFalse(IsDefinedInLua(_REMOTE, 'HelloWorld')) | |
| 891 | |
| 892 | |
| 893 def test_metadata(self): | |
| 894 UploadInstance(_REMOTE, 'Knee/T1/IM-0001-0001.dcm') | |
| 895 p = DoGet(_REMOTE, '/patients')[0] | |
| 896 i = DoGet(_REMOTE, '/instances')[0] | |
| 897 | |
| 898 m = DoGet(_REMOTE, '/patients/%s/metadata' % p) | |
| 899 self.assertEqual(1, len(m)) | |
| 900 self.assertEqual('LastUpdate', m[0]) | |
| 901 | |
| 902 m = DoGet(_REMOTE, '/instances/%s/metadata' % i) | |
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903 self.assertEqual(4, len(m)) |
| 12 | 904 self.assertTrue('IndexInSeries' in m) |
| 905 self.assertTrue('ReceptionDate' in m) | |
| 906 self.assertTrue('RemoteAET' in m) | |
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907 self.assertTrue('Origin' in m) |
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908 self.assertEqual(DoGet(_REMOTE, '/instances/%s/metadata/IndexInSeries' % i), 1) |
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909 self.assertEqual(DoGet(_REMOTE, '/instances/%s/metadata/Origin' % i), 'RestApi') |
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910 self.assertEqual(DoGet(_REMOTE, '/instances/%s/metadata/RemoteAET' % i), '') # None, received by REST API |
| 12 | 911 |
| 912 # Play with custom metadata | |
| 913 DoPut(_REMOTE, '/patients/%s/metadata/5555' % p, 'coucou') | |
| 914 m = DoGet(_REMOTE, '/patients/%s/metadata' % p) | |
| 915 self.assertEqual(2, len(m)) | |
| 916 self.assertTrue('LastUpdate' in m) | |
| 917 self.assertTrue('5555' in m) | |
| 918 self.assertEqual('coucou', DoGet(_REMOTE, '/patients/%s/metadata/5555' % p)) | |
| 919 DoPut(_REMOTE, '/patients/%s/metadata/5555' % p, 'hello') | |
| 920 self.assertEqual('hello', DoGet(_REMOTE, '/patients/%s/metadata/5555' % p)) | |
| 921 DoDelete(_REMOTE, '/patients/%s/metadata/5555' % p) | |
| 922 m = DoGet(_REMOTE, '/patients/%s/metadata' % p) | |
| 923 self.assertEqual(1, len(m)) | |
| 924 self.assertTrue('LastUpdate' in m) | |
| 13 | 925 |
| 926 | |
| 927 def test_statistics(self): | |
| 928 # Upload 16 instances | |
| 929 for i in range(4): | |
| 930 UploadInstance(_REMOTE, 'Brainix/Flair/IM-0001-000%d.dcm' % (i + 1)) | |
| 931 UploadInstance(_REMOTE, 'Brainix/Epi/IM-0001-000%d.dcm' % (i + 1)) | |
| 932 UploadInstance(_REMOTE, 'Knee/T1/IM-0001-000%d.dcm' % (i + 1)) | |
| 933 UploadInstance(_REMOTE, 'Knee/T2/IM-0001-000%d.dcm' % (i + 1)) | |
| 934 | |
| 935 s = DoGet(_REMOTE, '/statistics') | |
| 936 self.assertEqual(16, s['CountInstances']) | |
| 937 self.assertEqual(2, s['CountPatients']) | |
| 938 self.assertEqual(2, s['CountStudies']) | |
| 939 self.assertEqual(4, s['CountSeries']) | |
| 940 d = int(s['TotalUncompressedSize']) | |
| 941 | |
| 942 e = 0 | |
| 943 for patient in DoGet(_REMOTE, '/patients'): | |
| 944 s = DoGet(_REMOTE, '/patients/%s/statistics' % patient) | |
| 945 self.assertEqual(8, s['CountInstances']) | |
| 946 self.assertEqual(1, s['CountStudies']) | |
| 947 self.assertEqual(2, s['CountSeries']) | |
| 948 e += int(s['UncompressedSize']) | |
| 949 | |
| 950 for study in DoGet(_REMOTE, '/studies'): | |
| 951 s = DoGet(_REMOTE, '/studies/%s/statistics' % study) | |
| 952 self.assertEqual(8, s['CountInstances']) | |
| 953 self.assertEqual(2, s['CountSeries']) | |
| 954 e += int(s['UncompressedSize']) | |
| 955 | |
| 956 for series in DoGet(_REMOTE, '/series'): | |
| 957 s = DoGet(_REMOTE, '/series/%s/statistics' % series) | |
| 958 self.assertEqual(4, s['CountInstances']) | |
| 959 e += int(s['UncompressedSize']) | |
| 960 | |
| 961 self.assertEqual(3 * d, e) | |
| 962 | |
| 963 | |
| 964 def test_custom_attachment(self): | |
| 965 UploadInstance(_REMOTE, 'Brainix/Flair/IM-0001-0001.dcm') | |
| 966 patient = DoGet(_REMOTE, '/patients')[0] | |
| 967 instance = DoGet(_REMOTE, '/instances')[0] | |
| 968 size = int(DoGet(_REMOTE, '/patients/%s/statistics' % patient)['DiskSize']) | |
| 969 self.assertEqual(size, int(DoGet(_REMOTE, '/statistics')['TotalDiskSize'])) | |
| 970 | |
| 971 self.assertEqual(0, len(DoGet(_REMOTE, '/patients/%s/attachments' % patient))) | |
| 972 self.assertEqual(2, len(DoGet(_REMOTE, '/instances/%s/attachments' % instance))) | |
| 973 self.assertTrue('dicom' in DoGet(_REMOTE, '/instances/%s/attachments' % instance)) | |
| 974 self.assertTrue('dicom-as-json' in DoGet(_REMOTE, '/instances/%s/attachments' % instance)) | |
| 975 | |
| 976 self.assertRaises(Exception, lambda: DoPut(_REMOTE, '/patients/%s/attachments/22' % patient, 'hello')) | |
| 977 hello = 'hellohellohellohellohellohellohellohellohello' | |
| 978 DoPut(_REMOTE, '/patients/%s/attachments/1025' % patient, hello) | |
| 979 self.assertEqual(int(DoGet(_REMOTE, '/patients/%s/statistics' % patient)['DiskSize']), | |
| 980 int(DoGet(_REMOTE, '/statistics')['TotalDiskSize'])) | |
| 981 self.assertEqual(int(DoGet(_REMOTE, '/patients/%s/statistics' % patient)['DiskSize']), | |
| 982 size + int(DoGet(_REMOTE, '/patients/%s/attachments/1025/compressed-size' % patient))) | |
| 983 | |
| 984 DoPut(_REMOTE, '/patients/%s/attachments/1026' % patient, 'world') | |
| 985 self.assertEqual(int(DoGet(_REMOTE, '/patients/%s/statistics' % patient)['DiskSize']), | |
| 986 int(DoGet(_REMOTE, '/statistics')['TotalDiskSize'])) | |
| 987 self.assertEqual(int(DoGet(_REMOTE, '/patients/%s/statistics' % patient)['DiskSize']), | |
| 988 size + | |
| 989 int(DoGet(_REMOTE, '/patients/%s/attachments/1025/compressed-size' % patient)) + | |
| 990 int(DoGet(_REMOTE, '/patients/%s/attachments/1026/compressed-size' % patient))) | |
| 991 | |
| 992 self.assertEqual(2, len(DoGet(_REMOTE, '/patients/%s/attachments' % patient))) | |
| 993 self.assertEqual(hello, DoGet(_REMOTE, '/patients/%s/attachments/1025/data' % patient)) | |
| 994 self.assertEqual('world', DoGet(_REMOTE, '/patients/%s/attachments/1026/data' % patient)) | |
| 995 DoPost(_REMOTE, '/patients/%s/attachments/1025/verify-md5' % patient) | |
| 996 DoPost(_REMOTE, '/patients/%s/attachments/1026/verify-md5' % patient) | |
| 997 DoPut(_REMOTE, '/patients/%s/attachments/1026' % patient, 'world2') | |
| 998 self.assertEqual('world2', DoGet(_REMOTE, '/patients/%s/attachments/1026/data' % patient)) | |
| 999 | |
| 1000 self.assertRaises(Exception, lambda: DoDelete(_REMOTE, '/instances/%s/attachments/dicom' % instance)) | |
| 1001 DoDelete(_REMOTE, '/patients/%s/attachments/1025' % patient) | |
| 1002 self.assertEqual(int(DoGet(_REMOTE, '/patients/%s/statistics' % patient)['DiskSize']), | |
| 1003 int(DoGet(_REMOTE, '/statistics')['TotalDiskSize'])) | |
| 1004 self.assertEqual(int(DoGet(_REMOTE, '/patients/%s/statistics' % patient)['DiskSize']), | |
| 1005 size + int(DoGet(_REMOTE, '/patients/%s/attachments/1026/compressed-size' % patient))) | |
| 1006 | |
| 1007 self.assertEqual(1, len(DoGet(_REMOTE, '/patients/%s/attachments' % patient))) | |
| 1008 DoDelete(_REMOTE, '/patients/%s/attachments/1026' % patient) | |
| 1009 self.assertEqual(0, len(DoGet(_REMOTE, '/patients/%s/attachments' % patient))) | |
| 1010 | |
| 1011 self.assertEqual(int(DoGet(_REMOTE, '/patients/%s/statistics' % patient)['DiskSize']), size) | |
| 1012 self.assertEqual(size, int(DoGet(_REMOTE, '/statistics')['TotalDiskSize'])) | |
| 1013 | |
| 1014 | |
| 1015 def test_incoming_storescu(self): | |
| 1016 self.assertEqual(0, len(DoGet(_REMOTE, '/patients'))) | |
| 45 | 1017 subprocess.check_call([ FindExecutable('storescu'), |
|
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1018 _REMOTE['Server'], str(_REMOTE['DicomPort']), |
| 13 | 1019 GetDatabasePath('ColorTestImageJ.dcm') ]) |
| 1020 self.assertEqual(1, len(DoGet(_REMOTE, '/patients'))) | |
| 1021 | |
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1022 i = DoGet(_REMOTE, '/instances') |
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1023 self.assertEqual(1, len(i)) |
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1024 m = DoGet(_REMOTE, '/instances/%s/metadata' % i[0]) |
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1025 self.assertEqual(4, len(m)) |
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1026 self.assertTrue('IndexInSeries' in m) |
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1027 self.assertTrue('ReceptionDate' in m) |
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test Origin metadata of instances
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1028 self.assertTrue('RemoteAET' in m) |
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test Origin metadata of instances
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|
1029 self.assertTrue('Origin' in m) |
|
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test Origin metadata of instances
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|
1030 self.assertEqual(DoGet(_REMOTE, '/instances/%s/metadata/IndexInSeries' % i[0]), 1) |
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test Origin metadata of instances
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diff
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|
1031 self.assertEqual(DoGet(_REMOTE, '/instances/%s/metadata/Origin' % i[0]), 'DicomProtocol') |
|
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test Origin metadata of instances
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1032 self.assertEqual(DoGet(_REMOTE, '/instances/%s/metadata/RemoteAET' % i[0]), 'STORESCU') |
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test Origin metadata of instances
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|
1033 |
| 13 | 1034 |
| 1035 def test_incoming_findscu(self): | |
| 1036 def CallFindScu(args): | |
| 45 | 1037 p = subprocess.Popen([ FindExecutable('findscu'), |
|
44
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Toolbox.FindExecutable()
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|
1038 '-P', '-aec', _REMOTE['DicomAet'], '-aet', _LOCAL['DicomAet'], |
| 13 | 1039 _REMOTE['Server'], str(_REMOTE['DicomPort']) ] + args, |
| 1040 stderr=subprocess.PIPE) | |
| 1041 return p.communicate()[1] | |
| 1042 | |
| 1043 UploadInstance(_REMOTE, 'Multiframe.dcm') | |
| 1044 UploadInstance(_REMOTE, 'ColorTestImageJ.dcm') | |
| 1045 | |
| 1046 i = CallFindScu([ '-k', '0008,0052=PATIENT', '-k', '0010,0010' ]) | |
| 1047 patientNames = re.findall('\(0010,0010\).*?\[(.*?)\]', i) | |
| 1048 self.assertEqual(2, len(patientNames)) | |
| 1049 self.assertTrue('Test Patient BG ' in patientNames) | |
| 1050 self.assertTrue('Anonymized' in patientNames) | |
| 1051 | |
| 1052 i = CallFindScu([ '-k', '0008,0052=SERIES', '-k', '0008,0021' ]) | |
| 1053 series = re.findall('\(0008,0021\).*?\[\s*(.*?)\s*\]', i) | |
| 1054 self.assertEqual(2, len(series)) | |
| 1055 self.assertTrue('20070208' in series) | |
| 1056 self.assertTrue('19980312' in series) | |
| 1057 | |
|
56
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ModalitiesInStudy subtest
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diff
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|
1058 i = CallFindScu([ '-k', '0008,0052=SERIES', '-k', '0008,0021', '-k', 'ModalitiesInStudy=MR\\XA' ]) |
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ModalitiesInStudy subtest
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diff
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|
1059 series = re.findall('\(0008,0021\).*?\[\s*(.*?)\s*\]', i) |
|
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ModalitiesInStudy subtest
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|
1060 self.assertEqual(1, len(series)) |
|
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ModalitiesInStudy subtest
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|
1061 self.assertTrue('19980312' in series) |
|
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ModalitiesInStudy subtest
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|
1062 |
| 13 | 1063 i = CallFindScu([ '-k', '0008,0052=SERIES', '-k', 'PatientName=Anonymized' ]) |
| 1064 series = re.findall('\(0010,0010\).*?\[\s*(.*?)\s*\]', i) | |
| 1065 self.assertEqual(1, len(series)) | |
| 1066 | |
| 1067 # Test the "CaseSentitivePN" flag (false by default) | |
| 1068 i = CallFindScu([ '-k', '0008,0052=SERIES', '-k', 'PatientName=anonymized' ]) | |
| 1069 series = re.findall('\(0010,0010\).*?\[\s*(.*?)\s*\]', i) | |
| 1070 self.assertEqual(1, len(series)) | |
|
66
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Test returning sequence values
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|
1071 |
|
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Test returning sequence values
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|
1072 # Test returning sequence values (only since Orthanc 0.9.5) |
|
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Test returning sequence values
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parents:
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diff
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|
1073 i = CallFindScu([ '-k', '0008,0052=SERIES', '-k', '0008,2112' ]) # "ColorTestImageJ" has this sequence tag |
|
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Test returning sequence values
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parents:
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diff
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|
1074 sequences = re.findall('\(0008,2112\)', i) |
|
821d9eb73c45
Test returning sequence values
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diff
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|
1075 self.assertEqual(1, len(sequences)) |
| 70 | 1076 |
| 1077 # Test range search (buggy if Orthanc <= 0.9.6) | |
| 1078 i = CallFindScu([ '-k', '0008,0052=STUDY', '-k', 'StudyDate=19980312-' ]) | |
| 1079 studies = re.findall('\(0008,0020\).*?\[\s*(.*?)\s*\]', i) | |
| 1080 self.assertEqual(2, len(studies)) | |
| 1081 self.assertTrue('20070208' in studies) | |
| 1082 self.assertTrue('19980312' in studies) | |
| 1083 i = CallFindScu([ '-k', '0008,0052=STUDY', '-k', 'StudyDate=19980312-19980312' ]) | |
| 1084 studies = re.findall('\(0008,0020\).*?\[\s*(.*?)\s*\]', i) | |
| 1085 self.assertEqual(1, len(studies)) | |
| 1086 self.assertTrue('19980312' in studies) | |
| 1087 i = CallFindScu([ '-k', '0008,0052=STUDY', '-k', 'StudyDate=-19980312' ]) | |
| 1088 studies = re.findall('\(0008,0020\).*?\[\s*(.*?)\s*\]', i) | |
| 1089 self.assertEqual(1, len(studies)) | |
| 1090 self.assertTrue('19980312' in studies) | |
| 13 | 1091 |
| 1092 | |
| 1093 def test_incoming_movescu(self): | |
| 1094 UploadInstance(_REMOTE, 'Multiframe.dcm') | |
| 1095 | |
| 1096 self.assertEqual(0, len(DoGet(_LOCAL, '/patients'))) | |
| 17 | 1097 CallMoveScu([ '--patient', '-k', '0008,0052=PATIENT', '-k', 'PatientID=none' ]) |
| 13 | 1098 self.assertEqual(0, len(DoGet(_LOCAL, '/patients'))) |
| 1099 CallMoveScu([ '--patient', '-k', '0008,0052=PATIENT', '-k', 'PatientID=12345678' ]) | |
| 1100 self.assertEqual(1, len(DoGet(_LOCAL, '/patients'))) | |
| 1101 | |
| 1102 | |
| 1103 def test_findscu(self): | |
| 1104 i = UploadInstance(_REMOTE, 'DummyCT.dcm')['ID'] | |
| 1105 j = UploadInstance(_REMOTE, 'Issue22.dcm')['ID'] | |
| 1106 k = UploadInstance(_REMOTE, 'ColorTestImageJ.dcm')['ID'] | |
| 1107 DoPost(_REMOTE, '/modalities/orthanctest/store', str(i), 'text/plain') | |
| 1108 | |
| 1109 # Test the "find-patient" level | |
| 1110 p = DoPost(_REMOTE, '/modalities/orthanctest/find-patient', { }) | |
| 1111 self.assertEqual(1, len(p)) | |
| 1112 self.assertEqual('ozp00SjY2xG', p[0]['PatientID']) | |
| 1113 | |
| 1114 # Test wildcards constraints. The "LO" value representation | |
| 1115 # for PatientID is always case-sensitive, but the "PN" for | |
| 1116 # PatientName might depend on the implementation: | |
| 1117 # "GenerateConfigurationForTests.py" will force it to be case | |
| 1118 # insensitive (which was the default until Orthanc 0.8.6). | |
| 1119 p = DoPost(_REMOTE, '/modalities/orthanctest/find-patient', { 'PatientName' : 'K*' }) | |
| 1120 self.assertEqual(1, len(p)) | |
| 1121 | |
| 1122 p = DoPost(_REMOTE, '/modalities/orthanctest/find-patient', { 'PatientName' : 'k*' }) | |
| 1123 self.assertEqual(1, len(p)) | |
| 1124 | |
| 1125 p = DoPost(_REMOTE, '/modalities/orthanctest/find-patient', { 'PatientID' : 'ozp*' }) | |
| 1126 self.assertEqual(1, len(p)) | |
| 1127 | |
| 1128 p = DoPost(_REMOTE, '/modalities/orthanctest/find-patient', { 'PatientID' : 'o?p*' }) | |
| 1129 self.assertEqual(1, len(p)) | |
| 1130 | |
| 1131 p = DoPost(_REMOTE, '/modalities/orthanctest/find-patient', { 'PatientID' : '0?q*' }) | |
| 1132 self.assertEqual(0, len(p)) | |
| 1133 | |
| 1134 p = DoPost(_REMOTE, '/modalities/orthanctest/find-patient', { 'PatientName' : 'B*' }) | |
| 1135 self.assertEqual(0, len(p)) | |
| 1136 | |
| 1137 p = DoPost(_REMOTE, '/modalities/orthanctest/find-patient', { 'PatientName' : 'b*' }) | |
| 1138 self.assertEqual(0, len(p)) | |
| 1139 | |
| 1140 DoPost(_REMOTE, '/modalities/orthanctest/store', str(j), 'text/plain') | |
| 1141 DoPost(_REMOTE, '/modalities/orthanctest/store', str(k), 'text/plain') | |
| 1142 DoPost(_REMOTE, '/modalities/orthanctest/find-patient', { }) | |
| 1143 self.assertEqual(3, len(DoPost(_REMOTE, '/modalities/orthanctest/find-patient', { }))) | |
| 1144 | |
| 1145 p = DoPost(_REMOTE, '/modalities/orthanctest/find-patient', { 'PatientName' : 'A*' }) | |
| 1146 self.assertEqual(2, len(p)) | |
| 1147 | |
| 1148 # Test the "find-study" level. This is the instance "ColorTestImageJ.dcm" | |
| 1149 s = DoPost(_REMOTE, '/modalities/orthanctest/find-study', { 'PatientID' : 'B9uTHKOZ' }) | |
| 1150 self.assertEqual(1, len(s)) | |
| 1151 self.assertEqual('20070208', s[0]['StudyDate']) | |
| 1152 | |
| 1153 # Test range searches | |
| 1154 t = DoPost(_REMOTE, '/modalities/orthanctest/find-study', { 'PatientID' : 'B9uTHKOZ', | |
| 1155 'StudyDate' : '-20070101' }) | |
| 1156 self.assertEqual(0, len(t)) | |
| 1157 | |
| 1158 t = DoPost(_REMOTE, '/modalities/orthanctest/find-study', { 'PatientID' : 'B9uTHKOZ', | |
| 1159 'StudyDate' : '20090101-' }) | |
| 1160 self.assertEqual(0, len(t)) | |
| 1161 | |
| 1162 t = DoPost(_REMOTE, '/modalities/orthanctest/find-study', { 'PatientID' : 'B9uTHKOZ', | |
| 1163 'StudyDate' : '20070101-' }) | |
| 1164 self.assertEqual(1, len(t)) | |
| 1165 | |
| 1166 t = DoPost(_REMOTE, '/modalities/orthanctest/find-study', { 'PatientID' : 'B9uTHKOZ', | |
| 1167 'StudyDate' : '-20090101' }) | |
| 1168 self.assertEqual(1, len(t)) | |
| 1169 | |
| 1170 t = DoPost(_REMOTE, '/modalities/orthanctest/find-study', { 'PatientID' : 'B9uTHKOZ', | |
| 1171 'StudyDate' : '20070207-20070207' }) | |
| 1172 self.assertEqual(0, len(t)) | |
| 1173 | |
| 1174 t = DoPost(_REMOTE, '/modalities/orthanctest/find-study', { 'PatientID' : 'B9uTHKOZ', | |
| 1175 'StudyDate' : '20070208-20070208' }) | |
| 1176 self.assertEqual(1, len(t)) | |
| 1177 | |
| 1178 t = DoPost(_REMOTE, '/modalities/orthanctest/find-study', { 'PatientID' : 'B9uTHKOZ', | |
| 1179 'StudyDate' : '20070209-20070209' }) | |
| 1180 self.assertEqual(0, len(t)) | |
| 1181 | |
| 1182 # Test the ModalitiesInStudy tag | |
| 1183 t = DoPost(_REMOTE, '/modalities/orthanctest/find-study', { | |
| 1184 'PatientID' : 'B9uTHKOZ', | |
| 1185 'ModalitiesInStudy' : 'US' }) | |
| 1186 self.assertEqual(0, len(t)) | |
| 1187 | |
| 1188 t = DoPost(_REMOTE, '/modalities/orthanctest/find-study', { | |
| 1189 'PatientID' : 'B9uTHKOZ', | |
| 1190 'ModalitiesInStudy' : 'CT' }) | |
| 1191 self.assertEqual(1, len(t)) | |
| 1192 | |
| 1193 t = DoPost(_REMOTE, '/modalities/orthanctest/find-study', { | |
| 1194 'PatientID' : 'B9uTHKOZ', | |
| 1195 'ModalitiesInStudy' : 'US\\CT' }) | |
| 1196 self.assertEqual(1, len(t)) | |
| 1197 | |
| 1198 # Test the "find-series" level | |
| 1199 t = DoPost(_REMOTE, '/modalities/orthanctest/find-series', { | |
| 1200 'PatientID' : 'B9uTHKOZ', | |
| 1201 'StudyInstanceUID' : s[0]['StudyInstanceUID'] }) | |
| 1202 self.assertEqual(1, len(t)) | |
| 1203 | |
| 1204 # Test "\" separator | |
| 1205 t = DoPost(_REMOTE, '/modalities/orthanctest/find-series', { | |
| 1206 'PatientID' : 'B9uTHKOZ', | |
| 1207 'StudyInstanceUID' : s[0]['StudyInstanceUID'], | |
| 1208 'Modality' : 'MR\\CT\\US' }) | |
| 1209 self.assertEqual(1, len(t)) | |
| 1210 | |
| 1211 t = DoPost(_REMOTE, '/modalities/orthanctest/find-series', { | |
| 1212 'PatientID' : 'B9uTHKOZ', | |
| 1213 'StudyInstanceUID' : s[0]['StudyInstanceUID'], | |
| 1214 'Modality' : 'MR\\US' }) | |
| 1215 self.assertEqual(0, len(t)) | |
| 1216 | |
| 1217 | |
| 1218 def test_update_modalities(self): | |
| 1219 try: | |
| 1220 DoDelete(_REMOTE, '/modalities/toto') | |
| 1221 except: | |
| 1222 pass | |
| 1223 try: | |
| 1224 DoDelete(_REMOTE, '/modalities/tata') | |
| 1225 except: | |
| 1226 pass | |
| 1227 self.assertRaises(Exception, lambda: DoGet(_REMOTE, '/modalities/toto')) | |
| 1228 DoPut(_REMOTE, '/modalities/toto', [ "STORESCP", "localhost", 2000 ]) | |
| 1229 DoPut(_REMOTE, '/modalities/tata', [ "STORESCP", "localhost", 2000, 'MedInria' ]) | |
| 1230 self.assertRaises(Exception, lambda: DoPut(_REMOTE, '/modalities/toto', [ "STORESCP", "localhost", 2000, 'MedInriaaa' ])) | |
| 1231 self.assertTrue('store' in DoGet(_REMOTE, '/modalities/toto')) | |
| 1232 self.assertTrue('store' in DoGet(_REMOTE, '/modalities/tata')) | |
| 1233 DoDelete(_REMOTE, '/modalities/toto') | |
| 1234 DoDelete(_REMOTE, '/modalities/tata') | |
| 1235 self.assertRaises(Exception, lambda: DoGet(_REMOTE, '/modalities/toto')) | |
| 1236 self.assertRaises(Exception, lambda: DoGet(_REMOTE, '/modalities/tata')) | |
| 1237 | |
| 1238 | |
| 1239 def test_update_peers(self): | |
| 1240 # curl -X PUT http://localhost:8042/peers/toto -d '["http://localhost:8042/"]' -v | |
| 1241 try: | |
| 1242 DoDelete(_REMOTE, '/peers/toto') | |
| 1243 except: | |
| 1244 pass | |
| 1245 try: | |
| 1246 DoDelete(_REMOTE, '/peers/tata') | |
| 1247 except: | |
| 1248 pass | |
| 1249 self.assertRaises(Exception, lambda: DoGet(_REMOTE, '/peers/toto')) | |
| 1250 DoPut(_REMOTE, '/peers/toto', [ 'http://localhost:8042/' ]) | |
| 1251 DoPut(_REMOTE, '/peers/tata', [ 'http://localhost:8042/', 'user', 'pass' ]) | |
| 1252 self.assertRaises(Exception, lambda: DoPut(_REMOTE, '/peers/toto', [ 'http://localhost:8042/', 'a' ])) | |
| 1253 self.assertRaises(Exception, lambda: DoPut(_REMOTE, '/peers/toto', [ 'http://localhost:8042/', 'a', 'b', 'c' ])) | |
| 1254 self.assertTrue('store' in DoGet(_REMOTE, '/peers/toto')) | |
| 1255 self.assertTrue('store' in DoGet(_REMOTE, '/peers/tata')) | |
| 1256 DoDelete(_REMOTE, '/peers/toto') | |
| 1257 DoDelete(_REMOTE, '/peers/tata') | |
| 1258 self.assertRaises(Exception, lambda: DoGet(_REMOTE, '/peers/toto')) | |
| 1259 self.assertRaises(Exception, lambda: DoGet(_REMOTE, '/peers/tata')) | |
| 1260 | |
| 1261 | |
| 1262 def test_mesterhazy_modification(self): | |
| 1263 # When I modify a series ( eg. curl | |
| 1264 # http://localhost:8042/series/uidhere/modify -X POST -d | |
| 1265 # '{"Replace":{"SeriesDate":"19990101"}}' ) the modified | |
| 1266 # series is added to a new Study, instead of the existing | |
| 1267 # Study. Fixed in Orthanc 0.7.5 | |
| 1268 | |
| 1269 u = UploadInstance(_REMOTE, 'DummyCT.dcm') | |
| 1270 study = 'b9c08539-26f93bde-c81ab0d7-bffaf2cb-a4d0bdd0' | |
| 1271 series = 'f2635388-f01d497a-15f7c06b-ad7dba06-c4c599fe' | |
| 1272 | |
| 1273 modified = DoPost(_REMOTE, '/series/%s/modify' % series, | |
| 1274 json.dumps({ "Replace" : { "SeriesDate" : "19990101" }})) | |
| 1275 | |
| 1276 self.assertEqual(study, DoGet(_REMOTE, '/series/%s' % modified['ID']) ['ParentStudy']) | |
| 1277 | |
| 1278 | |
| 1279 def test_create(self): | |
| 1280 i = DoPost(_REMOTE, '/tools/create-dicom', | |
| 1281 json.dumps({ | |
| 1282 'PatientName' : 'Jodogne', | |
| 1283 'Modality' : 'CT', | |
| 58 | 1284 'SOPClassUID' : '1.2.840.10008.5.1.4.1.1.1', |
| 13 | 1285 'PixelData' : 'data:image/png;base64,iVBORw0KGgoAAAANSUhEUgAAAAUAAAAFCAYAAACNbyblAAAAHElEQVQI12P4//8/w38GIAXDIBKE0DHxgljNBAAO9TXL0Y4OHwAAAABJRU5ErkJggg==' # red dot in RGBA |
| 1286 })) | |
| 1287 | |
| 1288 self.assertEqual('Jodogne', DoGet(_REMOTE, '/instances/%s/content/PatientName' % i['ID']).strip()) | |
| 1289 self.assertEqual('CT', DoGet(_REMOTE, '/instances/%s/content/Modality' % i['ID']).strip()) | |
| 1290 | |
| 1291 png = GetImage(_REMOTE, '/instances/%s/preview' % i['ID']) | |
| 1292 self.assertEqual((5, 5), png.size) | |
| 1293 | |
| 38 | 1294 j = DoGet(_REMOTE, i['Path']) |
| 1295 self.assertEqual('Instance', j['Type']) | |
| 1296 self.assertEqual(j['ID'], i['ID']) | |
| 1297 | |
| 13 | 1298 |
| 1299 def test_pilates(self): | |
| 1300 # "SCU failed error when accessing orthanc with osirix" by | |
| 1301 # Pilates Agentur (Mar 10, 2014 at 9:33 PM) | |
| 1302 i = UploadInstance(_REMOTE, 'PilatesArgenturGEUltrasoundOsiriX.dcm')['ID'] | |
| 1303 self.assertEqual(0, len(DoGet(_LOCAL, '/patients'))) | |
| 1304 j = DoPost(_REMOTE, '/modalities/orthanctest/store', str(i), 'text/plain') | |
| 1305 self.assertEqual(1, len(DoGet(_LOCAL, '/patients'))) | |
| 1306 | |
| 1307 | |
| 1308 def test_shared_tags(self): | |
| 1309 a = UploadInstance(_REMOTE, 'Knee/T1/IM-0001-0001.dcm')['ID'] | |
| 1310 b = UploadInstance(_REMOTE, 'Knee/T1/IM-0001-0002.dcm')['ID'] | |
| 1311 p = DoGet(_REMOTE, '/patients')[0] | |
| 1312 | |
| 1313 self.assertTrue('0010,0010' in DoGet(_REMOTE, '/patients/%s/shared-tags' % p)) | |
| 1314 self.assertTrue('PatientName' in DoGet(_REMOTE, '/patients/%s/shared-tags?simplify' % p)) | |
| 1315 self.assertTrue('0008,1030' in DoGet(_REMOTE, '/patients/%s/shared-tags' % p)) | |
| 1316 self.assertTrue('StudyDescription' in DoGet(_REMOTE, '/patients/%s/shared-tags?simplify' % p)) | |
| 1317 self.assertTrue('0008,103e' in DoGet(_REMOTE, '/patients/%s/shared-tags' % p)) | |
| 1318 self.assertTrue('SeriesDescription' in DoGet(_REMOTE, '/patients/%s/shared-tags?simplify' % p)) | |
| 1319 self.assertFalse('0008,0018' in DoGet(_REMOTE, '/patients/%s/shared-tags' % p)) | |
| 1320 self.assertFalse('SOPInstanceUID' in DoGet(_REMOTE, '/patients/%s/shared-tags?simplify' % p)) | |
| 1321 | |
| 1322 self.assertTrue('0008,0018' in DoGet(_REMOTE, '/instances/%s/tags' % a)) | |
| 1323 self.assertTrue('SOPInstanceUID' in DoGet(_REMOTE, '/instances/%s/tags?simplify' % a)) | |
| 1324 | |
| 1325 | |
| 1326 def test_modules(self): | |
| 1327 a = UploadInstance(_REMOTE, 'Knee/T1/IM-0001-0001.dcm')['ID'] | |
| 1328 p = DoGet(_REMOTE, '/patients')[0] | |
| 1329 s = DoGet(_REMOTE, '/studies')[0] | |
| 1330 t = DoGet(_REMOTE, '/series')[0] | |
| 1331 | |
| 1332 self.assertTrue('0010,0010' in DoGet(_REMOTE, '/patients/%s/module' % p)) | |
| 1333 self.assertTrue('PatientName' in DoGet(_REMOTE, '/patients/%s/module?simplify' % p)) | |
| 1334 self.assertTrue('0010,0010' in DoGet(_REMOTE, '/studies/%s/module-patient' % p)) | |
| 1335 self.assertTrue('PatientName' in DoGet(_REMOTE, '/studies/%s/module-patient?simplify' % p)) | |
| 1336 self.assertTrue('0008,1030' in DoGet(_REMOTE, '/studies/%s/module' % s)) | |
| 1337 self.assertTrue('StudyDescription' in DoGet(_REMOTE, '/studies/%s/module?simplify' % s)) | |
| 1338 self.assertTrue('0008,103e' in DoGet(_REMOTE, '/series/%s/module' % p)) | |
| 1339 self.assertTrue('SeriesDescription' in DoGet(_REMOTE, '/series/%s/module?simplify' % p)) | |
| 1340 self.assertTrue('0008,0018' in DoGet(_REMOTE, '/instances/%s/module' % a)) | |
| 1341 self.assertTrue('SOPInstanceUID' in DoGet(_REMOTE, '/instances/%s/module?simplify' % a)) | |
| 1342 | |
| 1343 | |
| 1344 def test_auto_directory(self): | |
| 1345 a = UploadInstance(_REMOTE, 'Knee/T1/IM-0001-0001.dcm')['ID'] | |
| 1346 self.assertTrue('now' in DoGet(_REMOTE, '/tools')) | |
| 1347 self.assertTrue('dicom-conformance' in DoGet(_REMOTE, '/tools')) | |
| 1348 self.assertTrue(len(DoGet(_REMOTE, '/tools/dicom-conformance')) > 1000) | |
| 1349 self.assertTrue('orthanctest' in DoGet(_REMOTE, '/modalities')) | |
| 1350 self.assertTrue('echo' in DoGet(_REMOTE, '/modalities/orthanctest')) | |
| 1351 self.assertTrue('find' in DoGet(_REMOTE, '/modalities/orthanctest')) | |
| 1352 self.assertTrue('find-instance' in DoGet(_REMOTE, '/modalities/orthanctest')) | |
| 1353 self.assertTrue('find-patient' in DoGet(_REMOTE, '/modalities/orthanctest')) | |
| 1354 self.assertTrue('find-series' in DoGet(_REMOTE, '/modalities/orthanctest')) | |
| 1355 self.assertTrue('find-study' in DoGet(_REMOTE, '/modalities/orthanctest')) | |
| 1356 self.assertTrue('store' in DoGet(_REMOTE, '/modalities/orthanctest')) | |
| 1357 self.assertTrue('store' in DoGet(_REMOTE, '/peers/peer')) | |
| 1358 self.assertTrue('matlab' in DoGet(_REMOTE, '/instances/%s/frames/0' % a)) | |
| 1359 self.assertRaises(Exception, lambda: DoGet(_REMOTE, '/tools/nope')) | |
| 28 | 1360 self.assertRaises(Exception, lambda: DoGet(_REMOTE, '/nope')) |
| 1361 self.assertRaises(Exception, lambda: DoGet(_REMOTE, '/nope/nope.html')) | |
| 1362 self.assertEqual(404, DoGetRaw(_REMOTE, '/nope')[0].status) | |
| 1363 self.assertEqual(404, DoGetRaw(_REMOTE, '/nope/nope.html')[0].status) | |
| 13 | 1364 |
| 1365 | |
| 1366 def test_echo(self): | |
| 1367 DoPost(_REMOTE, '/modalities/orthanctest/echo') | |
| 1368 | |
| 1369 | |
| 1370 def test_xml(self): | |
| 1371 json = DoGet(_REMOTE, '/tools', headers = { 'accept' : 'application/json' }) | |
| 1372 xml = minidom.parseString(DoGet(_REMOTE, '/tools', headers = { 'accept' : 'application/xml' })) | |
| 1373 items = xml.getElementsByTagName('root')[0].getElementsByTagName('item') | |
| 1374 self.assertEqual(len(items), len(json)) | |
| 1375 | |
| 1376 self.assertTrue('dicom-conformance' in json) | |
| 1377 | |
| 1378 ok = False | |
| 1379 for i in items: | |
| 1380 if i.childNodes[0].data == 'dicom-conformance': | |
| 1381 ok = True | |
| 1382 self.assertTrue(ok) | |
| 1383 | |
| 1384 | |
|
46
85b2e36ed392
explicit GoogleCode source
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
45
diff
changeset
|
1385 def test_googlecode_issue_16(self): |
| 13 | 1386 i = UploadInstance(_REMOTE, 'Issue16.dcm')['ID'] |
| 1387 t = DoGet(_REMOTE, '/instances/%s/tags?simplify' % i)['FrameIncrementPointer'] | |
| 1388 self.assertEqual('0018,1063', t) | |
| 1389 | |
| 1390 | |
|
46
85b2e36ed392
explicit GoogleCode source
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
45
diff
changeset
|
1391 def test_googlecode_issue_22(self): |
| 13 | 1392 s = UploadInstance(_REMOTE, 'Issue22.dcm')['ID'] |
| 1393 a = [ | |
| 1394 "f804691f62197040438f4627c6b994f1", # Frame 0 | |
| 1395 "c69eee9a51eea3e8611e82e578897254", | |
| 1396 "315666be83e2d0111c77bc0996d84901", | |
| 1397 "3e27aa959d911172c48a1436443c72b1", | |
| 1398 "958642c9e7e9d232d3869faff546058c", | |
| 1399 "5e7ea8e3e4230cae707d143481355c59", | |
| 1400 "eda37f83558d858a596175aed8b2ad47", | |
| 1401 "486713bd2895c4ecbe0e97715ac7f80a", | |
| 1402 "091ef729eb169e67da8a0faa9631f9a8", | |
| 1403 "5aa2b8c7ffe0a483efaa8e12417686ca", | |
| 1404 "e2f39e85896fe58876654b94cd0b5013", | |
| 1405 "6fd2129e4950abbe1be053bc814d5da8", | |
| 1406 "c3331a8ba7a757f3d423735ab7fa81f9", | |
| 1407 "746f808582156734dd6b6fdfd3a0b72c", | |
| 1408 "8075ea2b227a70c60ea6b7b75a6bb190", | |
| 1409 "806b8b3e300c615099c11a5ec23465aa", | |
| 1410 "7c836aa298ba6eef96434579af631a11", | |
| 1411 "a0357dc9f4f72d73a885c33d7c287446", | |
| 1412 "f25ba3be1cc7d7fad95706adc199ea7d", | |
| 1413 "8b114c526b8cbed6cad8a3248b7b480c", | |
| 1414 "44e6670f127e612a2b4aa60a0d207698", | |
| 1415 "b8945f90fe02facf2ace24ca1ecbe0a5", | |
| 1416 "95c796c2fa8f59018b15cf2987b1f79b", | |
| 1417 "ce0a51ab30224205b44920221dc27351", # Frame 23 | |
| 1418 ] | |
| 1419 | |
| 1420 self.assertEqual(24, len(DoGet(_REMOTE, '/instances/%s/frames' % s))) | |
| 1421 self.assertRaises(Exception, lambda: DoGet(_REMOTE, '/instances/%s/frames/24/preview' % s)) | |
| 1422 | |
| 1423 for i in range(len(a)): | |
| 1424 self.assertEqual(a[i], ComputeMD5(DoGet(_REMOTE, '/instances/%s/frames/%d/preview' % (s, i)))) | |
| 1425 | |
| 1426 | |
|
46
85b2e36ed392
explicit GoogleCode source
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
45
diff
changeset
|
1427 def test_googlecode_issue_19(self): |
|
21
2a29bcff60a7
tests of image decoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
18
diff
changeset
|
1428 # This is an image with "YBR_FULL" photometric interpretation, it is not supported by Orthanc |
| 13 | 1429 # gdcmconv -i /home/jodogne/DICOM/GdcmDatabase/US_DataSet/HDI5000_US/3EAF5E01 -w -o Issue19.dcm |
| 1430 | |
| 1431 a = UploadInstance(_REMOTE, 'Issue19.dcm')['ID'] | |
|
21
2a29bcff60a7
tests of image decoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
18
diff
changeset
|
1432 self.assertRaises(Exception, lambda: DoGet(_REMOTE, '/instances/941ad3c8-05d05b88-560459f9-0eae0e20-6cddd533/preview')) |
| 13 | 1433 |
| 1434 | |
|
46
85b2e36ed392
explicit GoogleCode source
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
45
diff
changeset
|
1435 def test_googlecode_issue_37(self): |
| 13 | 1436 # Same test for issues 35 and 37. Fixed in Orthanc 0.9.1 |
| 1437 u = UploadInstance(_REMOTE, 'Beaufix/IM-0001-0001.dcm')['ID'] | |
| 1438 | |
| 1439 a = DoPost(_REMOTE, '/tools/find', { 'Level' : 'Series', | |
| 1440 'CaseSensitive' : True, | |
| 1441 'Query' : { 'StationName' : 'SMR4-MP3' }}) | |
| 1442 self.assertEqual(1, len(a)) | |
| 14 | 1443 |
| 1444 | |
| 1445 def test_rest_find(self): | |
| 1446 # Upload 8 instances | |
| 1447 for i in range(2): | |
| 1448 UploadInstance(_REMOTE, 'Brainix/Flair/IM-0001-000%d.dcm' % (i + 1)) | |
| 1449 UploadInstance(_REMOTE, 'Brainix/Epi/IM-0001-000%d.dcm' % (i + 1)) | |
| 1450 UploadInstance(_REMOTE, 'Knee/T1/IM-0001-000%d.dcm' % (i + 1)) | |
| 1451 UploadInstance(_REMOTE, 'Knee/T2/IM-0001-000%d.dcm' % (i + 1)) | |
| 1452 | |
| 1453 a = DoPost(_REMOTE, '/tools/find', { 'Level' : 'Patient', | |
| 1454 'CaseSensitive' : False, | |
| 1455 'Query' : { 'PatientName' : '*n*' }}) | |
| 1456 self.assertEqual(2, len(a)) | |
| 1457 | |
| 1458 a = DoPost(_REMOTE, '/tools/find', { 'Level' : 'Patient', | |
| 1459 'CaseSensitive' : True, | |
| 1460 'Query' : { 'PatientName' : '*n*' }}) | |
| 1461 self.assertEqual(0, len(a)) | |
| 1462 | |
| 1463 a = DoPost(_REMOTE, '/tools/find', { 'Expand' : True, | |
| 1464 'Level' : 'Patient', | |
| 1465 'CaseSensitive' : False, | |
| 1466 'Query' : { 'PatientName' : '*ne*' }}) | |
| 1467 self.assertEqual(1, len(a)) | |
| 1468 self.assertEqual('20080822', a[0]['MainDicomTags']['PatientBirthDate']) | |
| 1469 | |
| 1470 a = DoPost(_REMOTE, '/tools/find', { 'Level' : 'Patient', | |
| 1471 'CaseSensitive' : True, | |
| 1472 'Query' : { 'PatientName' : '*ne*' }}) | |
| 1473 self.assertEqual(0, len(a)) | |
| 1474 | |
| 1475 a = DoPost(_REMOTE, '/tools/find', { 'Level' : 'Study', | |
| 1476 'CaseSensitive' : True, | |
| 1477 'Query' : { 'PatientName' : '*NE*' }}) | |
| 1478 self.assertEqual(1, len(a)) | |
| 1479 | |
| 1480 a = DoPost(_REMOTE, '/tools/find', { 'Level' : 'Series', | |
| 1481 'CaseSensitive' : True, | |
| 1482 'Query' : { 'PatientName' : '*NE*' }}) | |
| 1483 self.assertEqual(2, len(a)) | |
| 1484 | |
| 1485 a = DoPost(_REMOTE, '/tools/find', { 'Level' : 'Instance', | |
| 1486 'CaseSensitive' : True, | |
| 1487 'Query' : { 'PatientName' : '*NE*' }}) | |
| 1488 self.assertEqual(4, len(a)) | |
| 1489 | |
| 1490 a = DoPost(_REMOTE, '/tools/find', { 'Level' : 'Patient', 'Query' : { }}) | |
| 1491 self.assertEqual(2, len(a)) | |
| 1492 | |
| 1493 a = DoPost(_REMOTE, '/tools/find', { 'Level' : 'Study', 'Query' : { }}) | |
| 1494 self.assertEqual(2, len(a)) | |
| 1495 | |
| 1496 a = DoPost(_REMOTE, '/tools/find', { 'Level' : 'Series', 'Query' : { }}) | |
| 1497 self.assertEqual(4, len(a)) | |
| 1498 | |
| 1499 a = DoPost(_REMOTE, '/tools/find', { 'Level' : 'Instance', 'Query' : { }}) | |
| 1500 self.assertEqual(8, len(a)) | |
| 1501 | |
| 1502 | |
| 1503 def test_rest_query_retrieve(self): | |
| 1504 self.assertEqual(0, len(DoGet(_REMOTE, '/patients'))) | |
| 1505 | |
| 1506 # Upload 8 instances | |
| 1507 for i in range(2): | |
| 1508 UploadInstance(_REMOTE, 'Brainix/Flair/IM-0001-000%d.dcm' % (i + 1)) | |
| 1509 UploadInstance(_REMOTE, 'Brainix/Epi/IM-0001-000%d.dcm' % (i + 1)) | |
| 1510 UploadInstance(_REMOTE, 'Knee/T1/IM-0001-000%d.dcm' % (i + 1)) | |
| 1511 UploadInstance(_REMOTE, 'Knee/T2/IM-0001-000%d.dcm' % (i + 1)) | |
| 1512 | |
| 1513 self.assertEqual(2, len(DoGet(_REMOTE, '/patients'))) | |
| 1514 for p in DoGet(_REMOTE, '/patients'): | |
| 1515 DoPost(_REMOTE, '/modalities/orthanctest/store', p) | |
| 1516 DoDelete(_REMOTE, '/patients/%s' % p) | |
| 1517 | |
| 1518 for q in DoGet(_REMOTE, '/queries'): | |
| 1519 DoDelete(_REMOTE, '/queries/%s' % q) | |
| 1520 | |
| 1521 self.assertEqual(0, len(DoGet(_REMOTE, '/patients'))) | |
| 1522 self.assertEqual(0, len(DoGet(_REMOTE, '/queries'))) | |
| 1523 a = DoPost(_REMOTE, '/modalities/orthanctest/query', { 'Level' : 'Series', | |
| 27 | 1524 'Query' : { |
| 1525 'PatientName' : '*NE*', | |
| 1526 'StudyDate' : '*', | |
| 1527 }})['ID'] | |
| 14 | 1528 self.assertEqual(1, len(DoGet(_REMOTE, '/queries'))) |
| 1529 | |
| 1530 b = DoGet(_REMOTE, '/queries/%s' % a) | |
| 1531 self.assertTrue('answers' in b) | |
| 1532 self.assertTrue('level' in b) | |
| 1533 self.assertTrue('modality' in b) | |
| 1534 self.assertTrue('query' in b) | |
| 1535 self.assertTrue('retrieve' in b) | |
| 1536 self.assertEqual('Series', DoGet(_REMOTE, '/queries/%s/level' % a)) | |
| 1537 self.assertEqual('orthanctest', DoGet(_REMOTE, '/queries/%s/modality' % a)) | |
| 1538 | |
| 1539 q = DoGet(_REMOTE, '/queries/%s/query?simplify' % a) | |
| 27 | 1540 self.assertEqual(2, len(q)) |
| 14 | 1541 self.assertTrue('PatientName' in q) |
| 27 | 1542 self.assertTrue('StudyDate' in q) |
| 14 | 1543 self.assertEqual('*NE*', q['PatientName']) |
| 27 | 1544 self.assertEqual('*', q['StudyDate']) |
| 14 | 1545 |
| 1546 self.assertEqual(2, len(DoGet(_REMOTE, '/queries/%s/answers' % a))) | |
| 1547 | |
| 1548 s = DoGet(_REMOTE, '/queries/%s/answers/0' % a) | |
| 1549 self.assertTrue('content' in s) | |
| 1550 self.assertTrue('retrieve' in s) | |
| 1551 | |
| 1552 s = DoGet(_REMOTE, '/queries/%s/answers/0/content?simplify' % a) | |
| 1553 self.assertEqual('887', s['PatientID']) | |
| 1554 self.assertEqual('2.16.840.1.113669.632.20.121711.10000160881', s['StudyInstanceUID']) | |
| 1555 | |
| 1556 self.assertEqual(0, len(DoGet(_REMOTE, '/patients'))) | |
| 1557 DoPost(_REMOTE, '/queries/%s/answers/0/retrieve' % a, 'ORTHANC') | |
| 1558 self.assertEqual(1, len(DoGet(_REMOTE, '/patients'))) | |
| 1559 self.assertEqual(1, len(DoGet(_REMOTE, '/studies'))) | |
| 1560 self.assertEqual(1, len(DoGet(_REMOTE, '/series'))) | |
| 1561 self.assertEqual(2, len(DoGet(_REMOTE, '/instances'))) | |
| 1562 | |
| 1563 DoPost(_REMOTE, '/queries/%s/answers/1/retrieve' % a, 'ORTHANC') | |
| 1564 self.assertEqual(1, len(DoGet(_REMOTE, '/patients'))) | |
| 1565 self.assertEqual(1, len(DoGet(_REMOTE, '/studies'))) | |
| 1566 self.assertEqual(2, len(DoGet(_REMOTE, '/series'))) | |
| 1567 self.assertEqual(4, len(DoGet(_REMOTE, '/instances'))) | |
| 1568 | |
| 1569 DoDelete(_REMOTE, '/queries/%s' % a) | |
| 1570 self.assertEqual(0, len(DoGet(_REMOTE, '/queries'))) | |
| 1571 | |
| 1572 | |
| 1573 def test_parent(self): | |
| 1574 u = UploadInstance(_REMOTE, 'DummyCT.dcm')['ID'] | |
| 1575 patient = '6816cb19-844d5aee-85245eba-28e841e6-2414fae2' | |
| 1576 study = 'b9c08539-26f93bde-c81ab0d7-bffaf2cb-a4d0bdd0' | |
| 1577 series = 'f2635388-f01d497a-15f7c06b-ad7dba06-c4c599fe' | |
| 1578 instance = '66a662ce-7430e543-bad44d47-0dc5a943-ec7a538d' | |
| 1579 self.assertEqual(instance, u); | |
| 1580 | |
| 1581 a = DoGet(_REMOTE, '/studies/%s/patient' % study) | |
| 1582 self.assertEqual('Patient', a['Type']) | |
| 1583 self.assertEqual(patient, a['ID']) | |
| 1584 | |
| 1585 a = DoGet(_REMOTE, '/series/%s/patient' % series) | |
| 1586 self.assertEqual('Patient', a['Type']) | |
| 1587 self.assertEqual(patient, a['ID']) | |
| 1588 | |
| 1589 a = DoGet(_REMOTE, '/series/%s/study' % series) | |
| 1590 self.assertEqual('Study', a['Type']) | |
| 1591 self.assertEqual(study, a['ID']) | |
| 1592 | |
| 1593 a = DoGet(_REMOTE, '/instances/%s/patient' % instance) | |
| 1594 self.assertEqual('Patient', a['Type']) | |
| 1595 self.assertEqual(patient, a['ID']) | |
| 1596 | |
| 1597 a = DoGet(_REMOTE, '/instances/%s/study' % instance) | |
| 1598 self.assertEqual('Study', a['Type']) | |
| 1599 self.assertEqual(study, a['ID']) | |
| 1600 | |
| 1601 a = DoGet(_REMOTE, '/instances/%s/series' % instance) | |
| 1602 self.assertEqual('Series', a['Type']) | |
| 1603 self.assertEqual(series, a['ID']) | |
| 1604 | |
| 1605 | |
| 1606 def test_shanon(self): | |
| 1607 def Anonymize(instance, replacements = {}): | |
| 1608 return DoPost(_REMOTE, '/instances/%s/anonymize' % instance, { 'Replace' : replacements }, 'application/json') | |
| 1609 | |
| 1610 self.assertEqual(0, len(DoGet(_REMOTE, '/instances'))) | |
| 1611 u = UploadInstance(_REMOTE, 'DummyCT.dcm')['ID'] | |
| 1612 self.assertEqual(1, len(DoGet(_REMOTE, '/instances'))) | |
| 1613 | |
| 1614 tags = [ 'PatientID', 'StudyInstanceUID', 'SeriesInstanceUID', 'SOPInstanceUID', 'DeidentificationMethod' ] | |
| 1615 ids = [ 'ozp00SjY2xG', | |
| 1616 '1.2.840.113619.2.176.2025.1499492.7391.1171285944.390', | |
| 1617 '1.2.840.113619.2.176.2025.1499492.7391.1171285944.394', | |
| 1618 '1.2.840.113619.2.176.2025.1499492.7040.1171286242.109' ] | |
| 1619 | |
| 1620 a = ExtractDicomTags(Anonymize(u), tags) | |
| 1621 for i in range(4): | |
| 1622 self.assertNotEqual(ids[i], a[i]) | |
| 1623 self.assertTrue(a[4].startswith('Orthanc')) | |
| 1624 | |
| 1625 a = ExtractDicomTags(Anonymize(u, { 'PatientName' : 'toto' }), tags) | |
| 1626 for i in range(4): | |
| 1627 self.assertNotEqual(ids[i], a[i]) | |
| 1628 self.assertFalse(a[4].startswith('Orthanc')) | |
| 1629 | |
| 1630 a = ExtractDicomTags(Anonymize(u, { 'SOPInstanceUID' : 'instance' }), tags) | |
| 1631 self.assertEqual('instance', a[3]) | |
| 1632 self.assertFalse(a[4].startswith('Orthanc')) | |
| 1633 | |
| 1634 a = ExtractDicomTags(Anonymize(u, { 'SeriesInstanceUID' : 'series' }), tags) | |
| 1635 self.assertEqual('series', a[2]) | |
| 1636 self.assertFalse(a[4].startswith('Orthanc')) | |
| 1637 | |
| 1638 a = ExtractDicomTags(Anonymize(u, { 'StudyInstanceUID' : 'study' }), tags) | |
| 1639 self.assertEqual('study', a[1]) | |
| 1640 self.assertFalse(a[4].startswith('Orthanc')) | |
| 1641 | |
| 1642 a = ExtractDicomTags(Anonymize(u, { 'PatientID' : 'patient' }), tags) | |
| 1643 self.assertEqual('patient', a[0]) | |
| 1644 self.assertFalse(a[4].startswith('Orthanc')) | |
| 1645 | |
| 1646 a = ExtractDicomTags(Anonymize(u, { 'PatientID' : 'patient', | |
| 1647 'StudyInstanceUID' : 'study', | |
| 1648 'SeriesInstanceUID' : 'series', | |
| 1649 'SOPInstanceUID' : 'instance' }), tags) | |
| 1650 self.assertEqual('patient', a[0]) | |
| 1651 self.assertFalse(a[4].startswith('Orthanc')) | |
| 1652 | |
| 1653 self.assertEqual(1, len(DoGet(_REMOTE, '/instances'))) | |
| 1654 | |
| 1655 | |
| 1656 def test_shanon_2(self): | |
| 1657 def Modify(instance, replacements = {}): | |
| 1658 return DoPost(_REMOTE, '/instances/%s/modify' % instance, { 'Replace' : replacements }, 'application/json') | |
| 1659 | |
| 1660 self.assertEqual(0, len(DoGet(_REMOTE, '/instances'))) | |
| 1661 u = UploadInstance(_REMOTE, 'DummyCT.dcm')['ID'] | |
| 1662 self.assertEqual(1, len(DoGet(_REMOTE, '/instances'))) | |
| 1663 | |
| 1664 tags = [ 'PatientID', 'StudyInstanceUID', 'SeriesInstanceUID', 'SOPInstanceUID', 'DeidentificationMethod' ] | |
| 1665 ids = [ 'ozp00SjY2xG', | |
| 1666 '1.2.840.113619.2.176.2025.1499492.7391.1171285944.390', | |
| 1667 '1.2.840.113619.2.176.2025.1499492.7391.1171285944.394', | |
| 1668 '1.2.840.113619.2.176.2025.1499492.7040.1171286242.109' ] | |
| 1669 | |
| 1670 a = ExtractDicomTags(Modify(u), tags) | |
| 1671 self.assertEqual(ids[0], a[0]) | |
| 1672 self.assertEqual(ids[1], a[1]) | |
| 1673 self.assertEqual(ids[2], a[2]) | |
| 1674 self.assertNotEqual(ids[3], a[3]) | |
| 1675 self.assertEqual(0, len(a[4])) | |
| 1676 | |
| 1677 a = ExtractDicomTags(Modify(u, { 'SOPInstanceUID' : 'instance' }), tags) | |
| 1678 self.assertEqual(ids[0], a[0]) | |
| 1679 self.assertEqual(ids[1], a[1]) | |
| 1680 self.assertEqual(ids[2], a[2]) | |
| 1681 self.assertEqual('instance', a[3]) | |
| 1682 | |
| 1683 a = ExtractDicomTags(Modify(u, { 'SeriesInstanceUID' : 'series' }), tags) | |
| 1684 self.assertEqual(ids[0], a[0]) | |
| 1685 self.assertEqual(ids[1], a[1]) | |
| 1686 self.assertEqual('series', a[2]) | |
| 1687 self.assertNotEqual(ids[3], a[3]) | |
| 1688 | |
| 1689 a = ExtractDicomTags(Modify(u, { 'StudyInstanceUID' : 'study' }), tags) | |
| 1690 self.assertEqual(ids[0], a[0]) | |
| 1691 self.assertEqual('study', a[1]) | |
| 1692 self.assertNotEqual(ids[2], a[2]) | |
| 1693 self.assertNotEqual(ids[3], a[3]) | |
| 1694 | |
| 1695 a = ExtractDicomTags(Modify(u, { 'PatientID' : 'patient' }), tags) | |
| 1696 self.assertEqual('patient', a[0]) | |
| 1697 self.assertNotEqual(ids[1], a[1]) | |
| 1698 self.assertNotEqual(ids[2], a[2]) | |
| 1699 self.assertNotEqual(ids[3], a[3]) | |
| 1700 | |
| 1701 a = ExtractDicomTags(Modify(u, { 'PatientID' : 'patient', | |
| 1702 'StudyInstanceUID' : 'study', | |
| 1703 'SeriesInstanceUID' : 'series', | |
| 1704 'SOPInstanceUID' : 'instance' }), tags) | |
| 1705 self.assertEqual('patient', a[0]) | |
| 1706 self.assertEqual('study', a[1]) | |
| 1707 self.assertEqual('series', a[2]) | |
| 1708 self.assertEqual('instance', a[3]) | |
| 1709 | |
| 1710 self.assertEqual(1, len(DoGet(_REMOTE, '/instances'))) | |
| 1711 | |
| 1712 | |
| 1713 def test_instances_tags(self): | |
| 1714 a = UploadInstance(_REMOTE, 'Knee/T1/IM-0001-0001.dcm')['ID'] | |
| 1715 b = UploadInstance(_REMOTE, 'Knee/T2/IM-0001-0001.dcm')['ID'] | |
| 1716 #a = UploadInstance(_REMOTE, 'Cardiac/MR.X.1.2.276.0.7230010.3.1.4.2831157719.2256.1336386937.676343')['ID'] | |
| 1717 #b = UploadInstance(_REMOTE, 'Cardiac/MR.X.1.2.276.0.7230010.3.1.4.2831157719.2256.1336386925.676329')['ID'] | |
| 1718 | |
| 1719 i = DoGet(_REMOTE, '/patients/%s/instances-tags?simplify' % DoGet(_REMOTE, '/patients')[0]) | |
| 1720 self.assertEqual(2, len(i)) | |
| 1721 self.assertEqual('887', i[i.keys()[0]]['PatientID']) | |
| 1722 self.assertEqual('887', i[i.keys()[1]]['PatientID']) | |
| 1723 | |
| 1724 i = DoGet(_REMOTE, '/patients/%s/instances-tags?simplify' % DoGet(_REMOTE, '/studies')[0]) | |
| 1725 self.assertEqual(2, len(i)) | |
| 1726 self.assertEqual('887', i[i.keys()[0]]['PatientID']) | |
| 1727 self.assertEqual('887', i[i.keys()[1]]['PatientID']) | |
| 1728 | |
| 1729 self.assertEqual(2, len(DoGet(_REMOTE, '/series'))) | |
| 1730 i = DoGet(_REMOTE, '/patients/%s/instances-tags?simplify' % DoGet(_REMOTE, '/series')[0]) | |
| 1731 self.assertEqual(1, len(i)) | |
| 1732 self.assertEqual('887', i[i.keys()[0]]['PatientID']) | |
| 1733 | |
| 1734 i = DoGet(_REMOTE, '/patients/%s/instances-tags?simplify' % DoGet(_REMOTE, '/series')[1]) | |
| 1735 self.assertEqual(1, len(i)) | |
| 1736 self.assertEqual('887', i[i.keys()[0]]['PatientID']) | |
| 1737 | |
| 1738 | |
| 1739 def test_lookup(self): | |
| 1740 a = DoPost(_REMOTE, '/tools/lookup', 'ozp00SjY2xG') | |
| 1741 self.assertEqual(0, len(a)) | |
| 1742 | |
| 1743 UploadInstance(_REMOTE, 'DummyCT.dcm') | |
| 1744 | |
| 1745 a = DoPost(_REMOTE, '/tools/lookup', 'ozp00SjY2xG') | |
| 1746 self.assertEqual(1, len(a)) | |
| 1747 self.assertEqual('Patient', a[0]['Type']) | |
| 1748 self.assertEqual('6816cb19-844d5aee-85245eba-28e841e6-2414fae2', a[0]['ID']) | |
| 1749 self.assertEqual('/patients/%s' % a[0]['ID'], a[0]['Path']) | |
| 1750 | |
| 1751 a = DoPost(_REMOTE, '/tools/lookup', '1.2.840.113619.2.176.2025.1499492.7391.1171285944.390') | |
| 1752 self.assertEqual(1, len(a)) | |
| 1753 self.assertEqual('Study', a[0]['Type']) | |
| 1754 self.assertEqual('b9c08539-26f93bde-c81ab0d7-bffaf2cb-a4d0bdd0', a[0]['ID']) | |
| 1755 self.assertEqual('/studies/%s' % a[0]['ID'], a[0]['Path']) | |
| 1756 | |
| 1757 a = DoPost(_REMOTE, '/tools/lookup', '1.2.840.113619.2.176.2025.1499492.7391.1171285944.394') | |
| 1758 self.assertEqual(1, len(a)) | |
| 1759 self.assertEqual('Series', a[0]['Type']) | |
| 1760 self.assertEqual('f2635388-f01d497a-15f7c06b-ad7dba06-c4c599fe', a[0]['ID']) | |
| 1761 self.assertEqual('/series/%s' % a[0]['ID'], a[0]['Path']) | |
| 1762 | |
| 1763 a = DoPost(_REMOTE, '/tools/lookup', '1.2.840.113619.2.176.2025.1499492.7040.1171286242.109') | |
| 1764 self.assertEqual(1, len(a)) | |
| 1765 self.assertEqual('Instance', a[0]['Type']) | |
| 1766 self.assertEqual('66a662ce-7430e543-bad44d47-0dc5a943-ec7a538d', a[0]['ID']) | |
| 1767 self.assertEqual('/instances/%s' % a[0]['ID'], a[0]['Path']) | |
| 1768 | |
| 1769 DropOrthanc(_REMOTE) | |
| 1770 a = DoPost(_REMOTE, '/tools/lookup', '3113719P') | |
| 1771 self.assertEqual(0, len(a)) | |
| 1772 | |
| 15 | 1773 |
| 1774 def test_autorouting(self): | |
| 1775 knee1 = 'Knee/T1/IM-0001-0001.dcm' | |
| 1776 knee2 = 'Knee/T2/IM-0001-0002.dcm' | |
| 1777 other = 'Brainix/Flair/IM-0001-0001.dcm' | |
| 1778 | |
| 1779 # Check that this version is >= 0.8.0 | |
| 1780 self.assertTrue(IsDefinedInLua(_REMOTE, '_InitializeJob')) | |
| 1781 self.assertTrue('orthanctest' in DoGet(_REMOTE, '/modalities')) | |
| 1782 | |
| 1783 UploadInstance(_REMOTE, knee1) | |
| 1784 self.assertEqual(0, len(DoGet(_LOCAL, '/instances'))) | |
| 1785 | |
| 1786 DropOrthanc(_REMOTE) | |
| 1787 DropOrthanc(_LOCAL) | |
| 1788 InstallLuaScript('Lua/Autorouting.lua') | |
| 1789 UploadInstance(_REMOTE, knee1) | |
| 1790 UploadInstance(_REMOTE, knee2) | |
| 1791 UploadInstance(_REMOTE, other) | |
| 1792 WaitEmpty(_REMOTE) | |
| 1793 UninstallLuaCallbacks() | |
| 1794 self.assertEqual(3, len(DoGet(_LOCAL, '/instances'))) | |
| 1795 | |
| 1796 DropOrthanc(_REMOTE) | |
| 1797 DropOrthanc(_LOCAL) | |
| 1798 InstallLuaScript('Lua/AutoroutingConditional.lua') | |
| 1799 UploadInstance(_REMOTE, knee1) | |
| 1800 UploadInstance(_REMOTE, knee2) | |
| 1801 UploadInstance(_REMOTE, other) | |
| 1802 WaitEmpty(_REMOTE) | |
| 1803 UninstallLuaCallbacks() | |
| 1804 self.assertEqual(2, len(DoGet(_LOCAL, '/instances'))) | |
| 1805 | |
| 1806 DropOrthanc(_REMOTE) | |
| 1807 DropOrthanc(_LOCAL) | |
| 1808 InstallLuaScript('Lua/AutoroutingModification.lua') | |
| 1809 UploadInstance(_REMOTE, knee1) | |
| 1810 WaitEmpty(_REMOTE) | |
| 1811 UninstallLuaCallbacks() | |
| 1812 i = DoGet(_LOCAL, '/instances') | |
| 1813 self.assertEqual(1, len(i)) | |
| 1814 | |
| 1815 with tempfile.NamedTemporaryFile(delete = True) as f: | |
| 1816 f.write(DoGet(_LOCAL, '/instances/%s/file' % i[0])) | |
| 1817 f.flush() | |
| 45 | 1818 routed = subprocess.check_output([ FindExecutable('dcm2xml'), f.name ]) |
| 15 | 1819 self.assertEqual('My Medical Device', re.search('"StationName">(.*?)<', routed).group(1).strip()) |
| 1820 self.assertEqual(None, re.search('"MilitaryRank"', routed)) | |
| 1821 self.assertEqual(None, re.search('"0051,0010"', routed)) # A private tag | |
| 17 | 1822 |
| 1823 | |
| 1824 def test_storescu_rf(self): | |
| 1825 i = UploadInstance(_REMOTE, 'KarstenHilbertRF.dcm')['ID'] | |
| 1826 self.assertEqual(0, len(DoGet(_LOCAL, '/instances'))) | |
| 1827 j = DoPost(_REMOTE, '/modalities/orthanctest/store', str(i), 'text/plain') | |
| 1828 self.assertEqual(1, len(DoGet(_LOCAL, '/instances'))) | |
| 18 | 1829 |
| 1830 | |
| 1831 def test_anonymize_instance(self): | |
| 1832 def AnonymizeAndUpload(instanceId, parameters): | |
| 1833 return DoPost(_REMOTE, '/instances', DoPost(_REMOTE, '/instances/%s/anonymize' % instanceId, parameters, | |
| 1834 'application/json'), 'application/dicom')['ID'] | |
| 1835 | |
| 1836 def ModifyAndUpload(instanceId, parameters): | |
| 1837 return DoPost(_REMOTE, '/instances', DoPost(_REMOTE, '/instances/%s/modify' % instanceId, parameters, | |
| 1838 'application/json'), 'application/dicom')['ID'] | |
| 1839 | |
| 1840 a = UploadInstance(_REMOTE, 'PrivateMDNTags.dcm')['ID'] | |
| 1841 s1 = DoGet(_REMOTE, '/instances/%s/content/PatientName' % a) | |
| 1842 s2 = DoGet(_REMOTE, '/instances/%s/content/00e1-10c2' % a) # Some private tag | |
| 1843 s3 = DoGet(_REMOTE, '/instances/%s/content/StudyDescription' % a) | |
| 1844 s4 = DoGet(_REMOTE, '/instances/%s/content/SeriesDescription' % a) | |
| 1845 s5 = DoGet(_REMOTE, '/instances/%s/content/InstitutionName' % a) | |
| 1846 | |
| 1847 b = AnonymizeAndUpload(a, '{}') | |
| 1848 self.assertNotEqual(s1, DoGet(_REMOTE, '/instances/%s/content/PatientName' % b)) | |
| 1849 self.assertRaises(Exception, lambda: DoGet(_REMOTE, '/instances/%s/content/00e1-10c2' % b)) | |
| 1850 | |
| 1851 # Keep private tag (only OK since Orthanc 0.8.0) | |
| 1852 b = AnonymizeAndUpload(a, '{"Keep":["00e1-10c2"]}') | |
| 1853 self.assertNotEqual(s1, DoGet(_REMOTE, '/instances/%s/content/PatientName' % b)) | |
| 1854 self.assertEqual(s2, DoGet(_REMOTE, '/instances/%s/content/00e1-10c2' % b)) | |
| 1855 | |
| 1856 b = AnonymizeAndUpload(a, '{"Keep":["00e1,10c2","PatientName"]}') | |
| 1857 self.assertEqual(s1, DoGet(_REMOTE, '/instances/%s/content/PatientName' % b)) | |
| 1858 self.assertEqual(s2, DoGet(_REMOTE, '/instances/%s/content/00e1-10c2' % b)) | |
| 1859 | |
| 1860 b = AnonymizeAndUpload(a, '{"Keep":["PatientName"],"Replace":{"00e1,10c2":"Hello"}}') | |
| 1861 self.assertEqual(s1, DoGet(_REMOTE, '/instances/%s/content/PatientName' % b)) | |
| 1862 self.assertTrue(DoGet(_REMOTE, '/instances/%s/content/00e1-10c2' % b).startswith('Hello')) | |
| 1863 | |
| 1864 # Examples from the Wiki | |
| 1865 b = AnonymizeAndUpload(a, '{"Replace":{"PatientName":"hello","0010-0020":"world"},"Keep":["StudyDescription", "SeriesDescription"],"KeepPrivateTags": null}') | |
| 1866 self.assertEqual('hello', DoGet(_REMOTE, '/instances/%s/content/0010-0010' % b).strip()) | |
| 1867 self.assertEqual('world', DoGet(_REMOTE, '/instances/%s/content/PatientID' % b).strip()) | |
| 1868 self.assertEqual(s3, DoGet(_REMOTE, '/instances/%s/content/0008,1030' % b)) | |
| 1869 self.assertEqual(s4, DoGet(_REMOTE, '/instances/%s/content/0008,103e' % b)) | |
| 1870 self.assertEqual(s4, DoGet(_REMOTE, '/instances/%s/content/0008-103E' % b)) | |
| 1871 self.assertEqual(s2, DoGet(_REMOTE, '/instances/%s/content/00e1-10c2' % b)) | |
| 1872 DoGet(_REMOTE, '/instances/%s/content/InstitutionName' % a) | |
| 1873 self.assertRaises(Exception, lambda: DoGet(_REMOTE, '/instances/%s/content/InstitutionName' % b)) | |
| 1874 | |
| 1875 b = ModifyAndUpload(a, '{"Replace":{"PatientName":"hello","PatientID":"world"},"Remove":["InstitutionName"],"RemovePrivateTags": null}') | |
| 1876 self.assertEqual('hello', DoGet(_REMOTE, '/instances/%s/content/0010-0010' % b).strip()) | |
| 1877 self.assertEqual('world', DoGet(_REMOTE, '/instances/%s/content/PatientID' % b).strip()) | |
| 1878 self.assertEqual(s3, DoGet(_REMOTE, '/instances/%s/content/0008,1030' % b)) | |
| 1879 self.assertEqual(s4, DoGet(_REMOTE, '/instances/%s/content/0008,103e' % b)) | |
| 1880 self.assertRaises(Exception, lambda: DoGet(_REMOTE, '/instances/%s/content/00e1-10c2' % b)) | |
| 1881 self.assertRaises(Exception, lambda: DoGet(_REMOTE, '/instances/%s/content/InstitutionName' % b)) | |
| 1882 | |
| 1883 b = ModifyAndUpload(a, '{"Replace":{"PatientName":"hello","PatientID":"world"}}') | |
| 1884 self.assertEqual('hello', DoGet(_REMOTE, '/instances/%s/content/0010-0010' % b).strip()) | |
| 1885 self.assertEqual('world', DoGet(_REMOTE, '/instances/%s/content/PatientID' % b).strip()) | |
| 1886 self.assertEqual(s2, DoGet(_REMOTE, '/instances/%s/content/00e1,10c2' % b)) | |
| 1887 self.assertEqual(s3, DoGet(_REMOTE, '/instances/%s/content/0008,1030' % b)) | |
| 1888 self.assertEqual(s4, DoGet(_REMOTE, '/instances/%s/content/0008-103E' % b)) | |
| 1889 self.assertEqual(s5, DoGet(_REMOTE, '/instances/%s/content/InstitutionName' % b)) | |
| 1890 | |
| 1891 | |
| 1892 # Test modify non-existing | |
| 1893 i = DoPost(_REMOTE, '/tools/create-dicom', | |
| 1894 json.dumps({ | |
| 1895 'PatientName' : 'Jodogne', | |
| 1896 'Modality' : 'CT', | |
| 1897 }))['ID'] | |
| 1898 | |
| 1899 self.assertEqual('Jodogne', DoGet(_REMOTE, '/instances/%s/content/PatientName' % i).strip()) | |
| 1900 self.assertRaises(Exception, lambda: DoGet(_REMOTE, '/instances/%s/content/StudyDescription' % i)) | |
| 1901 self.assertEqual('CT', DoGet(_REMOTE, '/instances/%s/content/Modality' % i).strip()) | |
| 1902 | |
| 1903 b = ModifyAndUpload(i, '{"Replace":{"StudyDescription":"hello","Modality":"world"}}') | |
| 1904 self.assertEqual('Jodogne', DoGet(_REMOTE, '/instances/%s/content/PatientName' % b).strip()) | |
| 1905 self.assertEqual('hello', DoGet(_REMOTE, '/instances/%s/content/StudyDescription' % b).strip()) | |
| 1906 self.assertEqual('world', DoGet(_REMOTE, '/instances/%s/content/Modality' % b).strip()) | |
| 1907 | |
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1908 |
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1909 def test_incoming_jpeg(self): |
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1910 def storescu(image, acceptUnknownSopClassUid): |
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1911 if acceptUnknownSopClassUid: |
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1912 tmp = [ '-xf', GetDatabasePath('UnknownSopClassUid.cfg'), 'Default' ] |
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1913 else: |
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1914 tmp = [ '-xs' ] |
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1915 |
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1916 with open(os.devnull, 'w') as FNULL: |
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1917 subprocess.check_call([ FindExecutable('storescu') ] + tmp + |
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1918 [ _REMOTE['Server'], str(_REMOTE['DicomPort']), |
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1919 GetDatabasePath(image) ], |
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1920 stderr = FNULL) |
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1921 |
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1922 self.assertEqual(0, len(DoGet(_REMOTE, '/patients'))) |
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1923 InstallLuaScript('Lua/TransferSyntaxDisable.lua') |
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1924 self.assertRaises(Exception, lambda: storescu('Knix/Loc/IM-0001-0001.dcm', False)) |
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1925 self.assertRaises(Exception, lambda: storescu('UnknownSopClassUid.dcm', True)) |
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1926 self.assertEqual(0, len(DoGet(_REMOTE, '/patients'))) |
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1927 InstallLuaScript('Lua/TransferSyntaxEnable.lua') |
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1928 DoPost(_REMOTE, '/tools/execute-script', "print('All special transfer syntaxes are now accepted')") |
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1929 storescu('Knix/Loc/IM-0001-0001.dcm', False) |
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1930 storescu('UnknownSopClassUid.dcm', True) |
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1931 self.assertEqual(2, len(DoGet(_REMOTE, '/patients'))) |
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1932 |
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1933 |
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1934 def test_storescu_jpeg(self): |
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1935 self.assertEqual(0, len(DoGet(_REMOTE, '/exports')['Exports'])) |
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1936 |
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1937 knixStudy = 'b9c08539-26f93bde-c81ab0d7-bffaf2cb-a4d0bdd0' |
| 64 | 1938 i = UploadInstance(_REMOTE, 'Knix/Loc/IM-0001-0001.dcm')['ID'] |
| 1939 | |
| 1940 # This is JPEG lossless | |
| 1941 self.assertEqual('1.2.840.10008.1.2.4.70', DoGet(_REMOTE, '/instances/%s/header?simplify' % i)['TransferSyntaxUID']) | |
| 1942 | |
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1943 UploadInstance(_REMOTE, 'Knix/Loc/IM-0001-0002.dcm') |
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1944 UploadInstance(_REMOTE, 'Knix/Loc/IM-0001-0003.dcm') |
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1945 |
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1946 a = UploadInstance(_REMOTE, 'Brainix/Flair/IM-0001-0001.dcm')['ID'] |
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1947 b = UploadInstance(_REMOTE, 'ColorTestImageJ.dcm')['ID'] |
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1948 self.assertEqual(0, len(DoGet(_LOCAL, '/instances'))) |
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1949 DoPost(_REMOTE, '/modalities/orthanctest/store', [ knixStudy, a, b ]) |
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1950 self.assertEqual(5, len(DoGet(_LOCAL, '/instances'))) |
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1951 |
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1952 self.assertEqual(3, len(DoGet(_REMOTE, '/exports')['Exports'])) |
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1953 |
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1954 DropOrthanc(_REMOTE) |
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1955 self.assertEqual(0, len(DoGet(_REMOTE, '/exports')['Exports'])) |
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1956 |
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1957 |
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1958 def test_pixel_data(self): |
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1959 jpeg = UploadInstance(_REMOTE, 'Knix/Loc/IM-0001-0001.dcm')['ID'] |
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1960 color = UploadInstance(_REMOTE, 'ColorTestImageJ.dcm')['ID'] |
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1961 phenix = UploadInstance(_REMOTE, 'Phenix/IM-0001-0001.dcm')['ID'] |
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1962 |
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1963 phenixSize = 358 * 512 * 2 |
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1964 colorSize = 1000 * 1000 * 3 |
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1965 jpegSize = 51918 |
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1966 |
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1967 self.assertEqual(1, len(DoGet(_REMOTE, '/instances/%s/content/7fe0-0010' % phenix))) |
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1968 self.assertEqual(1, len(DoGet(_REMOTE, '/instances/%s/content/7fe0-0010' % color))) |
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1969 self.assertEqual(2, len(DoGet(_REMOTE, '/instances/%s/content/7fe0-0010' % jpeg))) |
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1970 |
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1971 self.assertEqual(0, len(DoGet(_REMOTE, '/instances/%s/content/7fe0-0010/0' % jpeg))) |
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1972 self.assertEqual(jpegSize, len(DoGet(_REMOTE, '/instances/%s/content/7fe0-0010/1' % jpeg))) |
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1973 |
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1974 self.assertEqual(phenixSize, len(DoGet(_REMOTE, '/instances/%s/content/7fe0-0010/0' % phenix))) |
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1975 self.assertEqual(colorSize, len(DoGet(_REMOTE, '/instances/%s/content/7fe0-0010/0' % color))) |
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1976 |
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1977 |
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1978 def test_decode_brainix(self): |
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1979 brainix = [ |
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1980 UploadInstance(_REMOTE, 'Brainix/Epi/IM-0001-0001.dcm')['ID'], # (*) |
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1981 UploadInstance(_REMOTE, 'Formats/JpegLossless.dcm')['ID'], # JPEG-LS, same as (*) (since Orthanc 0.7.6) |
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1982 UploadInstance(_REMOTE, 'Formats/Jpeg.dcm')['ID'], # JPEG, same as (*) (since Orthanc 0.7.6) |
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1983 ] |
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1984 h = '6fb11b932d535c2be04beabd99793ff8' |
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1985 maxValue = 426.0 |
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1986 |
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1987 truth = Image.open(GetDatabasePath('Formats/Brainix.png')) |
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1988 for i in brainix: |
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1989 self.AssertSameImages(truth.getdata(), '/instances/%s/image-int16' % i) |
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1990 self.AssertSameImages(truth.getdata(), '/instances/%s/image-uint16' % i) |
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1991 |
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1992 truth2 = map(lambda x: min(255, x), truth.getdata()) |
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1993 for i in brainix: |
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1994 self.AssertSameImages(truth2, '/instances/%s/image-uint8' % i) |
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1995 |
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1996 truth2 = map(lambda x: x * 255.0 / maxValue, truth.getdata()) |
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1997 for i in brainix: |
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1998 self.AssertSameImages(truth2, '/instances/%s/preview' % i) |
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1999 |
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2000 for i in brainix: |
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2001 self.assertEqual(h, ComputeMD5(DoGet(_REMOTE, '/instances/%s/matlab' % i))) |
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2002 |
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2003 |
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2004 def test_decode_color(self): |
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2005 imagej = UploadInstance(_REMOTE, 'ColorTestImageJ.dcm')['ID'] |
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2006 color = UploadInstance(_REMOTE, 'ColorTestMalaterre.dcm')['ID'] |
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2007 |
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2008 for i in [ imagej, color ]: |
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2009 for j in [ 'image-uint8', 'image-uint16', 'image-int16' ]: |
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2010 self.assertRaises(Exception, lambda: DoGet(_REMOTE, '/instances/%s/%s' % (i, j))) |
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2011 |
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2012 self.assertEqual('c14c687f7a1ea9fe022479fc87c67274', ComputeMD5(DoGet(_REMOTE, '/instances/%s/preview' % imagej))) |
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2013 self.assertEqual('a87d122918a56f803bcfe9d2586b9125', ComputeMD5(DoGet(_REMOTE, '/instances/%s/preview' % color))) |
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2014 |
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2015 self.assertEqual('30cc46bfa7aba77a40e4178f6184c25a', ComputeMD5(DoGet(_REMOTE, '/instances/%s/matlab' % imagej))) |
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2016 self.assertEqual('ff195005cef06b59666fd220a9b4cd9a', ComputeMD5(DoGet(_REMOTE, '/instances/%s/matlab' % color))) |
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2017 |
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2018 |
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2019 def test_decode_rf(self): |
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2020 rf = UploadInstance(_REMOTE, 'KarstenHilbertRF.dcm')['ID'] |
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2021 truth = Image.open(GetDatabasePath('Formats/KarstenHilbertRF.png')) |
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2022 |
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2023 self.AssertSameImages(truth.getdata(), '/instances/%s/image-uint8' % rf) |
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2024 self.AssertSameImages(truth.getdata(), '/instances/%s/image-uint16' % rf) |
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2025 self.AssertSameImages(truth.getdata(), '/instances/%s/image-int16' % rf) |
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2026 self.AssertSameImages(truth.getdata(), '/instances/%s/preview' % rf) |
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2027 |
|
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|
2028 self.assertEqual('42254d70efd2f4a1b8f3455909689f0e', ComputeMD5(DoGet(_REMOTE, '/instances/%s/matlab' % rf))) |
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2029 |
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2030 |
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2031 def test_decode_multiframe(self): |
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2032 mf = UploadInstance(_REMOTE, 'Multiframe.dcm')['ID'] |
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2033 |
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2034 # Test the first frame |
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2035 truth = Image.open(GetDatabasePath('Formats/Multiframe0.png')) |
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2036 self.AssertSameImages(truth.getdata(), '/instances/%s/image-uint8' % mf) |
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2037 self.AssertSameImages(truth.getdata(), '/instances/%s/image-uint16' % mf) |
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2038 self.AssertSameImages(truth.getdata(), '/instances/%s/image-int16' % mf) |
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2039 self.AssertSameImages(truth.getdata(), '/instances/%s/preview' % mf) |
|
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2040 self.assertEqual('9812b99d93bbcd4e7684ded089b5dfb3', ComputeMD5(DoGet(_REMOTE, '/instances/%s/matlab' % mf))) |
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2041 |
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2042 self.AssertSameImages(truth.getdata(), '/instances/%s/frames/0/image-uint16' % mf) |
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2043 |
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2044 # Test the last frame |
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2045 truth = Image.open(GetDatabasePath('Formats/Multiframe75.png')) |
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2046 self.AssertSameImages(truth.getdata(), '/instances/%s/frames/75/image-uint16' % mf) |
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2047 |
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2048 |
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2049 def test_decode_signed(self): |
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2050 signed = UploadInstance(_REMOTE, 'SignedCT.dcm')['ID'] |
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2051 minValue = -2000 |
|
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2052 maxValue = 4042 |
|
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2053 |
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2054 truth = Image.open(GetDatabasePath('Formats/SignedCT.png')) |
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2055 self.AssertSameImages(truth.getdata(), '/instances/%s/image-int16' % signed) |
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2056 |
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2057 truth2 = map(lambda x: 0 if x >= 32768 else x, truth.getdata()) |
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2058 self.AssertSameImages(truth2, '/instances/%s/image-uint16' % signed) |
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2059 |
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2060 truth3 = map(lambda x: 255 if x >= 256 else x, truth2) |
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2061 self.AssertSameImages(truth3, '/instances/%s/image-uint8' % signed) |
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2062 |
|
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2063 tmp = map(lambda x: x - 65536 if x >= 32768 else x, truth.getdata()) |
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2064 tmp = map(lambda x: (255.0 * (x - minValue)) / (maxValue - minValue), tmp) |
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2065 self.AssertSameImages(tmp, '/instances/%s/preview' % signed) |
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2066 |
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2067 self.assertEqual('b57e6c872a3da50877c7da689b03a444', ComputeMD5(DoGet(_REMOTE, '/instances/%s/matlab' % signed))) |
| 22 | 2068 |
| 2069 | |
|
46
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2070 def test_googlecode_issue_32(self): |
| 22 | 2071 f = UploadInstance(_REMOTE, 'Issue32.dcm')['ID'] |
| 2072 tags = DoGet(_REMOTE, '/instances/%s/tags?simplify' % f) | |
| 2073 self.assertEqual(u'Рентгенография', tags['SeriesDescription']) | |
| 2074 self.assertEqual(u'Таз', tags['BodyPartExamined']) | |
| 2075 self.assertEqual(u'Прямая', tags['ViewPosition']) | |
| 2076 | |
| 2077 | |
| 2078 def test_encodings(self): | |
| 23 | 2079 # Latin-1 (ISO_IR 100) |
| 22 | 2080 brainix = UploadInstance(_REMOTE, 'Brainix/Epi/IM-0001-0001.dcm')['ID'] |
| 2081 tags = DoGet(_REMOTE, '/instances/%s/tags?simplify' % brainix) | |
| 2082 self.assertEqual(u'IRM cérébrale, neuro-crâne', tags['StudyDescription']) | |
| 23 | 2083 |
| 2084 # Latin-2 (ISO_IR 101) | |
| 2085 a = UploadInstance(_REMOTE, 'MarekLatin2.dcm')['ID'] | |
| 2086 i = DoGet(_REMOTE, '/instances/%s/simplified-tags' % a) | |
| 2087 # dcm2xml MarekLatin2.dcm | iconv -f latin2 -t utf-8 | xmllint --format - | |
| 2088 self.assertEqual('Imię i Nazwisko osoby opisującej', | |
| 2089 i['ContentSequence'][4]['ConceptNameCodeSequence'][0]['CodeMeaning'].encode('utf-8')) | |
| 2090 | |
|
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2091 |
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2092 def test_storescu_custom_aet(self): |
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2093 # This tests a feature introduced in Orthanc 0.9.1: "Custom |
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2094 # setting of the local AET during C-Store SCU (both in Lua and |
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2095 # in the REST API)." |
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2096 # https://groups.google.com/forum/#!msg/orthanc-users/o5qMULformU/wZjW2iSaMcAJ |
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2097 |
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2098 self.assertEqual(0, len(DoGet(_LOCAL, '/patients'))) |
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2099 |
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2100 a = UploadInstance(_REMOTE, 'Knee/T1/IM-0001-0001.dcm') |
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2101 b = UploadInstance(_REMOTE, 'Knee/T1/IM-0001-0002.dcm') |
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2102 c = UploadInstance(_REMOTE, 'Knee/T1/IM-0001-0003.dcm') |
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2103 |
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2104 j = DoPost(_REMOTE, '/modalities/orthanctest/store', { |
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2105 'LocalAet' : 'YOP', |
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2106 'Resources' : [ a['ID'], b['ID'] ] |
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2107 }) |
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2108 |
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2109 self.assertEqual(2, len(DoGet(_LOCAL, '/instances'))) |
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2110 self.assertEqual('YOP', DoGet(_LOCAL, '/instances/%s/metadata/RemoteAET' % a['ID'])) |
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2111 |
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2112 DropOrthanc(_LOCAL) |
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2113 self.assertEqual(0, len(DoGet(_LOCAL, '/instances'))) |
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2114 |
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2115 j = DoPost(_REMOTE, '/modalities/orthanctest/store', { |
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2116 'Resources' : [ c['ID'] ] |
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2117 }) |
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2118 |
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2119 self.assertEqual(1, len(DoGet(_LOCAL, '/instances'))) |
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2120 self.assertEqual('ORTHANC', DoGet(_LOCAL, '/instances/%s/metadata/RemoteAET' % c['ID'])) |
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2121 |
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2122 DropOrthanc(_REMOTE) |
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2123 DropOrthanc(_LOCAL) |
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2124 |
|
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2125 InstallLuaScript('Lua/AutoroutingChangeAet.lua') |
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2126 DoPost(_REMOTE, '/tools/execute-script', 'aet = "HELLO"', 'application/lua') |
|
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2127 |
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2128 self.assertEqual(0, len(DoGet(_LOCAL, '/instances'))) |
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2129 UploadInstance(_REMOTE, 'Knee/T1/IM-0001-0001.dcm') |
|
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2130 WaitEmpty(_REMOTE) |
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2131 self.assertEqual(1, len(DoGet(_LOCAL, '/instances'))) |
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2132 self.assertEqual('HELLO', DoGet(_LOCAL, '/instances/%s/metadata/RemoteAET' % a['ID'])) |
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2133 |
|
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2134 DoPost(_REMOTE, '/tools/execute-script', 'aet = nill', 'application/lua') |
|
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2135 UploadInstance(_REMOTE, 'Knee/T1/IM-0001-0002.dcm') |
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|
2136 WaitEmpty(_REMOTE) |
|
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2137 self.assertEqual(2, len(DoGet(_LOCAL, '/instances'))) |
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2138 self.assertEqual('ORTHANC', DoGet(_LOCAL, '/instances/%s/metadata/RemoteAET' % b['ID'])) |
|
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2139 |
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2140 def test_resources_since_limit(self): |
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2141 # Upload 16 instances |
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2142 for i in range(4): |
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2143 UploadInstance(_REMOTE, 'Brainix/Flair/IM-0001-000%d.dcm' % (i + 1)) |
|
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2144 UploadInstance(_REMOTE, 'Brainix/Epi/IM-0001-000%d.dcm' % (i + 1)) |
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2145 UploadInstance(_REMOTE, 'Knee/T1/IM-0001-000%d.dcm' % (i + 1)) |
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2146 UploadInstance(_REMOTE, 'Knee/T2/IM-0001-000%d.dcm' % (i + 1)) |
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2147 |
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2148 self.assertEqual(2, len(DoGet(_REMOTE, '/patients'))) |
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2149 self.assertEqual(2, len(DoGet(_REMOTE, '/studies'))) |
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2150 self.assertEqual(4, len(DoGet(_REMOTE, '/series'))) |
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2151 self.assertEqual(16, len(DoGet(_REMOTE, '/instances'))) |
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2152 |
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2153 self.assertRaises(Exception, lambda: DoGet(_REMOTE, '/patients&since=10' % i)) |
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2154 self.assertRaises(Exception, lambda: DoGet(_REMOTE, '/patients&limit=10' % i)) |
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2155 |
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2156 self.assertEqual(0, len(DoGet(_REMOTE, '/patients?since=0&limit=0'))) |
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2157 self.assertEqual(2, len(DoGet(_REMOTE, '/patients?since=0&limit=100'))) |
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2158 self.assertEqual(2, len(DoGet(_REMOTE, '/studies?since=0&limit=100'))) |
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2159 self.assertEqual(4, len(DoGet(_REMOTE, '/series?since=0&limit=100'))) |
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2160 self.assertEqual(16, len(DoGet(_REMOTE, '/instances?since=0&limit=100'))) |
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2161 self.assertEqual(1, len(DoGet(_REMOTE, '/patients?since=1&limit=100'))) |
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2162 self.assertEqual(0, len(DoGet(_REMOTE, '/patients?since=2&limit=100'))) |
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2163 self.assertEqual(0, len(DoGet(_REMOTE, '/patients?since=3&limit=100'))) |
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2164 self.assertEqual(1, len(DoGet(_REMOTE, '/studies?since=1&limit=100'))) |
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2165 self.assertEqual(3, len(DoGet(_REMOTE, '/series?since=1&limit=100'))) |
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2166 self.assertEqual(2, len(DoGet(_REMOTE, '/series?since=2&limit=100'))) |
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2167 self.assertEqual(1, len(DoGet(_REMOTE, '/series?since=3&limit=100'))) |
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2168 self.assertEqual(0, len(DoGet(_REMOTE, '/series?since=4&limit=100'))) |
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2169 self.assertEqual(0, len(DoGet(_REMOTE, '/series?since=100&limit=100'))) |
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2170 self.assertEqual(15, len(DoGet(_REMOTE, '/instances?since=1&limit=100'))) |
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2171 |
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2172 for limit in [ 1, 2, 3, 7, 16, 17 ]: |
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2173 s = {} |
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2174 since = 0 |
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2175 while True: |
|
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2176 t = DoGet(_REMOTE, '/instances?since=%d&limit=%d' % (since, limit)) |
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2177 if len(t) == 0: |
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|
2178 break |
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2179 |
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2180 since += len(t) |
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2181 for i in t: |
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2182 s[i] = None |
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2183 |
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|
2184 self.assertEqual(16, len(s)) |
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2185 for instance in DoGet(_REMOTE, '/instances'): |
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|
2186 self.assertTrue(instance in s) |
| 36 | 2187 |
| 2188 | |
| 2189 def test_create_pdf(self): | |
| 2190 # Upload 4 instances | |
| 2191 brainixInstance = UploadInstance(_REMOTE, 'Brainix/Flair/IM-0001-0001.dcm')['ID'] | |
| 2192 UploadInstance(_REMOTE, 'Brainix/Epi/IM-0001-0001.dcm') | |
| 2193 UploadInstance(_REMOTE, 'Knee/T1/IM-0001-0001.dcm') | |
| 2194 UploadInstance(_REMOTE, 'Knee/T2/IM-0001-0001.dcm') | |
| 2195 | |
| 2196 brainixPatient = '16738bc3-e47ed42a-43ce044c-a3414a45-cb069bd0' | |
| 2197 brainixStudy = '27f7126f-4f66fb14-03f4081b-f9341db2-53925988' | |
| 2198 brainixEpi = '2ac1316d-3e432022-62eabff2-c59f5475-9b1ac3f8' | |
| 2199 | |
| 2200 with open(GetDatabasePath('HelloWorld.pdf'), 'rb') as f: | |
| 2201 pdf = f.read() | |
| 2202 | |
| 2203 i = DoPost(_REMOTE, '/tools/create-dicom', | |
| 2204 json.dumps({ | |
| 2205 'Tags' : { | |
| 2206 'PatientName' : 'Jodogne', | |
| 2207 'Modality' : 'CT', | |
| 2208 }, | |
| 2209 'Content' : 'data:application/pdf;base64,' + base64.b64encode(pdf) | |
| 2210 })) | |
| 2211 | |
| 2212 self.assertEqual('Jodogne', DoGet(_REMOTE, '/instances/%s/content/PatientName' % i['ID']).strip()) | |
| 2213 self.assertEqual('OT', DoGet(_REMOTE, '/instances/%s/content/Modality' % i['ID']).strip()) | |
| 2214 | |
| 2215 b = DoGet(_REMOTE, '/instances/%s/content/0042-0011' % i['ID']) | |
| 2216 self.assertEqual(len(b), len(pdf) + 1) | |
| 2217 self.assertEqual(ComputeMD5(b), ComputeMD5(pdf + '\0')) | |
| 2218 | |
| 2219 self.assertRaises(Exception, lambda: DoPost(_REMOTE, '/tools/create-dicom', | |
| 2220 json.dumps({ | |
| 2221 'Parent' : brainixPatient, | |
| 2222 'Tags' : { | |
| 2223 'PatientName' : 'Jodogne', | |
| 2224 } | |
| 2225 }))) | |
| 2226 | |
| 2227 i = DoPost(_REMOTE, '/tools/create-dicom', | |
| 2228 json.dumps({ | |
| 2229 'Parent' : brainixPatient, | |
| 2230 'Tags' : { 'StudyDescription' : 'PDF^Patient' }, | |
| 2231 'Content' : 'data:application/pdf;base64,' + base64.b64encode(pdf) | |
| 2232 })) | |
| 2233 | |
| 2234 self.assertEqual(brainixPatient, DoGet(_REMOTE, '/instances/%s/patient' % i['ID'])['ID']) | |
| 2235 | |
| 2236 i = DoPost(_REMOTE, '/tools/create-dicom', | |
| 2237 json.dumps({ | |
| 2238 'Parent' : brainixStudy, | |
| 2239 'Tags' : { 'SeriesDescription' : 'PDF^Study' }, | |
| 2240 'Content' : 'data:application/pdf;base64,' + base64.b64encode(pdf) | |
| 2241 })) | |
| 2242 | |
| 2243 self.assertEqual(brainixStudy, DoGet(_REMOTE, '/instances/%s/study' % i['ID'])['ID']) | |
| 2244 | |
| 2245 i = DoPost(_REMOTE, '/tools/create-dicom', | |
| 2246 json.dumps({ | |
| 2247 'Parent' : brainixEpi, | |
| 37 | 2248 'Tags' : { 'SpecificCharacterSet' : 'ISO_IR 13' }, |
| 36 | 2249 'Content' : 'data:application/pdf;base64,' + base64.b64encode(pdf) |
| 2250 })) | |
| 2251 | |
| 2252 self.assertEqual(brainixEpi, DoGet(_REMOTE, '/instances/%s/series' % i['ID'])['ID']) | |
| 2253 | |
| 2254 b = DoGet(_REMOTE, '/instances/%s/pdf' % i['ID']) | |
| 2255 self.assertEqual(len(b), len(pdf)) | |
| 2256 self.assertEqual(ComputeMD5(b), ComputeMD5(pdf)) | |
| 2257 | |
| 2258 self.assertRaises(Exception, lambda: DoGet(_REMOTE, '/instances/%s/pdf' % brainixInstance)) | |
| 38 | 2259 |
| 2260 | |
| 2261 def test_create_series(self): | |
| 2262 i = DoPost(_REMOTE, '/tools/create-dicom', | |
| 2263 json.dumps({ | |
| 2264 'Tags' : { | |
| 40 | 2265 'SpecificCharacterSet' : 'ISO_IR 100', |
| 2266 'PatientName' : 'Sébastien Jodogne', | |
| 38 | 2267 'Modality' : 'CT', |
| 2268 }, | |
| 2269 'Content' : [ | |
| 40 | 2270 { |
| 2271 'Content': 'data:image/png;base64,iVBORw0KGgoAAAANSUhEUgAAAAUAAAAFCAYAAACNbyblAAAAHElEQVQI12P4//8/w38GIAXDIBKE0DHxgljNBAAO9TXL0Y4OHwAAAABJRU5ErkJggg==', # red dot in RGBA | |
| 2272 'Tags' : { 'ImageComments' : 'Tutu' } | |
| 2273 }, | |
| 38 | 2274 'data:image/png;base64,iVBORw0KGgoAAAANSUhEUgAAABAAAAAQCAYAAAAf8/9hAAAAoUlEQVQ4jZ2SWw3EIBREjwUsYAELa2EtoAULFUCyXAtroRZqoRbox254BdLC/DZnZjoXWJFgCDg8egW2CBEhEnDzyRk+Ecxz2KP/0AL8S99T+jQccAVs22qKwAuPuq0uyNg9cPLh3am+pe/dkHLZtqJHj6vXJrZ7nvzvxxgemXgUwnGfXqpee09mUwp8m022OYP6bLF7mVuVe0y/umxinsAXRd9z0k1ubWsAAAAASUVORK5CYII=', |
| 2275 ] | |
| 2276 })) | |
| 2277 | |
| 2278 s = DoGet(_REMOTE, i['Path']) | |
| 2279 self.assertEqual('Series', s['Type']) | |
| 2280 self.assertEqual(s['ID'], i['ID']) | |
| 2281 self.assertEqual(2, len(s['Instances'])) | |
| 39 | 2282 self.assertEqual(2, s['ExpectedNumberOfInstances']) |
| 2283 self.assertEqual('Complete', s['Status']) | |
| 40 | 2284 |
| 2285 a = DoGet(_REMOTE, '/instances/%s/tags?simplify' % s['Instances'][0]) | |
| 2286 b = DoGet(_REMOTE, '/instances/%s/tags?simplify' % s['Instances'][1]) | |
| 2287 self.assertTrue('ImageComments' in a or 'ImageComments' in b) | |
| 2288 if 'ImageComments' in a: | |
| 2289 self.assertEqual('Tutu', a['ImageComments']) | |
| 2290 else: | |
| 2291 self.assertEqual('Tutu', b['ImageComments']) | |
| 2292 | |
| 2293 patient = DoGet(_REMOTE, '/instances/%s/patient' % s['Instances'][0]) | |
| 2294 self.assertEqual(patient['MainDicomTags']['PatientName'].encode('utf-8'), | |
| 2295 'Sébastien Jodogne') | |
| 47 | 2296 |
| 2297 | |
| 2298 def test_create_binary(self): | |
| 2299 binary = ''.join(map(chr, range(256))) | |
| 2300 encoded = 'data:application/octet-stream;base64,' + base64.b64encode(binary) | |
| 2301 tags = { | |
| 2302 'PatientName' : 'Jodogne', | |
| 2303 '8899-8899' : encoded | |
| 2304 } | |
| 2305 | |
| 2306 i = DoPost(_REMOTE, '/tools/create-dicom', | |
| 2307 json.dumps({ | |
| 2308 'Tags' : tags | |
| 2309 })) | |
| 2310 | |
| 2311 self.assertEqual('Jodogne', DoGet(_REMOTE, '/instances/%s/content/PatientName' % i['ID']).strip()) | |
| 2312 self.assertEqual(binary, DoGet(_REMOTE, '/instances/%s/content/8899-8899' % i['ID']).strip()) | |
| 2313 | |
| 2314 i = DoPost(_REMOTE, '/tools/create-dicom', | |
| 2315 json.dumps({ | |
| 2316 'InterpretBinaryTags' : False, | |
| 2317 'Tags' : tags | |
| 2318 })) | |
| 2319 | |
| 2320 self.assertEqual('Jodogne', DoGet(_REMOTE, '/instances/%s/content/PatientName' % i['ID']).strip()) | |
| 2321 self.assertEqual(encoded, DoGet(_REMOTE, '/instances/%s/content/8899-8899' % i['ID'])[0:-1]) | |
|
48
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2322 |
|
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|
2323 |
|
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|
2324 def test_patient_ids_collision(self): |
|
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2325 # Upload 3 instances from 3 different studies, but with the |
|
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|
2326 # same PatientID |
|
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|
2327 for i in range(3): |
|
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|
2328 UploadInstance(_REMOTE, 'PatientIdsCollision/Image%d.dcm' % (i + 1)) |
|
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|
2329 |
|
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|
2330 a = DoPost(_REMOTE, '/tools/find', { 'Level' : 'Patient', |
|
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|
2331 'Query' : { 'PatientName' : '*' }}) |
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2332 self.assertEqual(1, len(a)) |
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2333 self.assertEqual('COMMON', DoGet(_REMOTE, '/patients/%s' % a[0]) ['MainDicomTags']['PatientID']) |
|
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2334 |
|
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|
2335 a = DoPost(_REMOTE, '/tools/find', { 'Level' : 'Study', |
|
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|
2336 'CaseSensitive' : True, |
|
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|
2337 'Query' : { 'PatientName' : 'FOO\\HELLO' }}) |
|
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2338 self.assertEqual(2, len(a)) |
|
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|
2339 |
|
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|
2340 a = DoPost(_REMOTE, '/tools/find', { 'Level' : 'Series', |
|
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|
2341 'CaseSensitive' : False, |
|
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|
2342 'Query' : { 'PatientName' : 'Foo' }}) |
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|
2343 self.assertEqual(1, len(a)) |
|
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2344 self.assertEqual('FOO^SERIES', DoGet(_REMOTE, '/series/%s/study' % a[0]) ['MainDicomTags']['StudyDescription']) |
|
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|
2345 self.assertEqual('FOO', DoGet(_REMOTE, '/series/%s/study' % a[0]) ['PatientMainDicomTags']['PatientName']) |
|
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|
2346 self.assertEqual('COMMON', DoGet(_REMOTE, '/series/%s/study' % a[0]) ['PatientMainDicomTags']['PatientID']) |
|
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|
2347 |
|
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diff
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|
2348 a = DoPost(_REMOTE, '/tools/find', { 'Level' : 'Study', |
|
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diff
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|
2349 'Query' : { 'PatientName' : '*' }}) |
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2350 self.assertEqual(3, len(a)) |
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2351 d = map(lambda x: DoGet(_REMOTE, '/studies/%s' % x) ['MainDicomTags']['StudyDescription'], a) |
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2352 self.assertTrue('FOO^SERIES' in d) |
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2353 self.assertTrue('HELLO^SERIES' in d) |
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2354 self.assertTrue('WORLD^SERIES' in d) |
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2355 |
|
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|
2356 d = map(lambda x: DoGet(_REMOTE, '/studies/%s' % x) ['PatientMainDicomTags']['PatientID'], a) |
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2357 self.assertEqual(1, len(set(d))) |
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2358 self.assertEqual('COMMON', d[0]) |
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2359 |
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2360 for i in a: |
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2361 d = DoGet(_REMOTE, '/studies/%s' % i) ['MainDicomTags']['StudyDescription'] |
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2362 p = DoGet(_REMOTE, '/studies/%s' % i) ['PatientMainDicomTags']['PatientName'] |
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2363 self.assertEqual('%s^SERIES' % p, d) |
|
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2364 |
|
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|
2365 |
|
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|
2366 def test_bitbucket_issue_4(self): |
|
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2367 UploadInstance(_REMOTE, 'Brainix/Epi/IM-0001-0001.dcm') |
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|
2368 UploadInstance(_REMOTE, 'Brainix/Epi/IM-0001-0002.dcm') |
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2369 UploadInstance(_REMOTE, 'Brainix/Epi/IM-0001-0003.dcm') |
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2370 UploadInstance(_REMOTE, 'Formats/Jpeg.dcm') |
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2371 UploadInstance(_REMOTE, 'Formats/JpegLossless.dcm') |
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|
2372 UploadInstance(_REMOTE, 'Formats/Rle.dcm') |
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|
2373 |
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|
2374 self.assertEqual(0, len(DoGet(_LOCAL, '/instances'))) |
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|
2375 self.assertEqual(6, len(DoGet(_REMOTE, '/instances'))) |
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diff
changeset
|
2376 |
|
e7f9b8199545
test_bitbucket_issue_4
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
48
diff
changeset
|
2377 p = DoGet(_REMOTE, '/patients') |
|
e7f9b8199545
test_bitbucket_issue_4
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
48
diff
changeset
|
2378 self.assertEqual(2, len(p)) |
|
e7f9b8199545
test_bitbucket_issue_4
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
48
diff
changeset
|
2379 i1 = map(lambda x: x['ID'], DoGet(_REMOTE, '/patients/%s/instances' % p[0])) |
|
e7f9b8199545
test_bitbucket_issue_4
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
48
diff
changeset
|
2380 i2 = map(lambda x: x['ID'], DoGet(_REMOTE, '/patients/%s/instances' % p[1])) |
|
e7f9b8199545
test_bitbucket_issue_4
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
48
diff
changeset
|
2381 self.assertEqual(3, len(i1)) |
|
e7f9b8199545
test_bitbucket_issue_4
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
48
diff
changeset
|
2382 self.assertEqual(3, len(i2)) |
|
e7f9b8199545
test_bitbucket_issue_4
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
48
diff
changeset
|
2383 |
|
e7f9b8199545
test_bitbucket_issue_4
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
48
diff
changeset
|
2384 j = DoPost(_REMOTE, '/modalities/orthanctest/store', i2[0:1] + i1 + i2[1:3]) |
|
e7f9b8199545
test_bitbucket_issue_4
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
48
diff
changeset
|
2385 |
|
e7f9b8199545
test_bitbucket_issue_4
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
48
diff
changeset
|
2386 self.assertEqual(6, len(DoGet(_LOCAL, '/instances'))) |
|
50
8de63d56cf11
test_create_sequence
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
49
diff
changeset
|
2387 |
|
8de63d56cf11
test_create_sequence
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
49
diff
changeset
|
2388 |
|
8de63d56cf11
test_create_sequence
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
49
diff
changeset
|
2389 def test_create_sequence(self): |
|
8de63d56cf11
test_create_sequence
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
49
diff
changeset
|
2390 i = DoPost(_REMOTE, '/tools/create-dicom', |
|
8de63d56cf11
test_create_sequence
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
49
diff
changeset
|
2391 json.dumps({ |
|
8de63d56cf11
test_create_sequence
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
49
diff
changeset
|
2392 'Tags' : { |
|
8de63d56cf11
test_create_sequence
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
49
diff
changeset
|
2393 'SpecificCharacterSet': 'ISO_IR 100', # Encode using Latin1 |
|
8de63d56cf11
test_create_sequence
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
49
diff
changeset
|
2394 'PatientName': 'Jodogne^', |
|
51
264a20a0276d
test_modify_sequence
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
50
diff
changeset
|
2395 'ReferencedStudySequence': GenerateTestSequence(), |
|
50
8de63d56cf11
test_create_sequence
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
49
diff
changeset
|
2396 } |
|
8de63d56cf11
test_create_sequence
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
49
diff
changeset
|
2397 }))['ID'] |
|
8de63d56cf11
test_create_sequence
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
49
diff
changeset
|
2398 |
|
8de63d56cf11
test_create_sequence
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
49
diff
changeset
|
2399 self.assertEqual('Jodogne^', DoGet(_REMOTE, '/instances/%s/content/PatientName' % i)) |
|
8de63d56cf11
test_create_sequence
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
49
diff
changeset
|
2400 self.assertEqual('Hello^', DoGet(_REMOTE, '/instances/%s/content/ReferencedStudySequence/0/StudyDescription' % i)) |
|
8de63d56cf11
test_create_sequence
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
49
diff
changeset
|
2401 self.assertEqual('Toto', DoGet(_REMOTE, '/instances/%s/content/ReferencedStudySequence/0/ReferencedStudySequence/0/StudyDescription' % i)) |
|
8de63d56cf11
test_create_sequence
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
49
diff
changeset
|
2402 self.assertEqual('Tata', DoGet(_REMOTE, '/instances/%s/content/ReferencedStudySequence/0/ReferencedStudySequence/1/StudyDescription' % i)) |
|
8de63d56cf11
test_create_sequence
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
49
diff
changeset
|
2403 self.assertEqual(u'Sébastien^'.encode('latin-1'), |
|
8de63d56cf11
test_create_sequence
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
49
diff
changeset
|
2404 DoGet(_REMOTE, '/instances/%s/content/ReferencedStudySequence/1/StudyDescription' % i)) |
|
51
264a20a0276d
test_modify_sequence
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
50
diff
changeset
|
2405 |
|
264a20a0276d
test_modify_sequence
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
50
diff
changeset
|
2406 |
|
264a20a0276d
test_modify_sequence
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
50
diff
changeset
|
2407 def test_modify_sequence(self): |
|
264a20a0276d
test_modify_sequence
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
50
diff
changeset
|
2408 i = UploadInstance(_REMOTE, 'PrivateTags.dcm')['ID'] |
|
264a20a0276d
test_modify_sequence
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
50
diff
changeset
|
2409 self.assertRaises(Exception, lambda: DoGet(_REMOTE, '/instances/%s/content/ReferencedStudySequence' % i)) |
|
264a20a0276d
test_modify_sequence
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
50
diff
changeset
|
2410 |
|
264a20a0276d
test_modify_sequence
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
50
diff
changeset
|
2411 j = DoPost(_REMOTE, '/instances/%s/modify' % i, |
|
264a20a0276d
test_modify_sequence
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
50
diff
changeset
|
2412 json.dumps({ |
|
264a20a0276d
test_modify_sequence
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
50
diff
changeset
|
2413 "Replace" : { |
|
264a20a0276d
test_modify_sequence
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
50
diff
changeset
|
2414 "PatientName" : "hello", |
|
264a20a0276d
test_modify_sequence
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
50
diff
changeset
|
2415 'ReferencedStudySequence': GenerateTestSequence(), |
|
264a20a0276d
test_modify_sequence
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
50
diff
changeset
|
2416 }, |
|
264a20a0276d
test_modify_sequence
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
50
diff
changeset
|
2417 }), |
|
264a20a0276d
test_modify_sequence
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
50
diff
changeset
|
2418 'application/json') |
|
264a20a0276d
test_modify_sequence
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
50
diff
changeset
|
2419 j = DoPost(_REMOTE, '/instances', j, 'application/dicom')['ID'] |
|
264a20a0276d
test_modify_sequence
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
50
diff
changeset
|
2420 DoDelete(_REMOTE, '/instances/%s' % i) |
|
264a20a0276d
test_modify_sequence
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
50
diff
changeset
|
2421 |
| 52 | 2422 self.assertEqual(2, len(DoGet(_REMOTE, '/instances/%s/content/ReferencedStudySequence' % j))) |
| 2423 | |
| 2424 | |
| 2425 def test_compression(self): | |
| 2426 i = UploadInstance(_REMOTE, 'DummyCT.dcm')['ID'] | |
| 2427 | |
| 2428 data = DoGetRaw(_REMOTE, '/instances/%s/attachments/dicom-as-json/data' % i)[1] | |
| 2429 | |
| 2430 # "StorageCompression" is enabled in the Orthanc to be tested, | |
| 2431 # uncompress the data before running the test | |
| 2432 if DoGet(_REMOTE, '/instances/%s/attachments/dicom-as-json/is-compressed' % i) != 0: | |
| 2433 DoPost(_REMOTE, '/instances/%s/attachments/dicom-as-json/uncompress' % i) | |
| 2434 | |
| 2435 cs = DoGet(_REMOTE, '/statistics')['TotalDiskSize'] | |
| 2436 us = DoGet(_REMOTE, '/statistics')['TotalUncompressedSize'] | |
| 2437 size = DoGet(_REMOTE, '/instances/%s/attachments/dicom-as-json/size' % i) | |
| 2438 md5 = DoGet(_REMOTE, '/instances/%s/attachments/dicom-as-json/md5' % i) | |
| 2439 self.assertEqual(data, DoGetRaw(_REMOTE, '/instances/%s/attachments/dicom-as-json/compressed-data' % i)[1]) | |
| 2440 self.assertEqual(md5, DoGet(_REMOTE, '/instances/%s/attachments/dicom-as-json/compressed-md5' % i)) | |
| 2441 self.assertEqual(size, DoGet(_REMOTE, '/instances/%s/attachments/dicom-as-json/compressed-size' % i)) | |
| 2442 | |
| 2443 ops = DoGet(_REMOTE, '/instances/%s/attachments/dicom-as-json' % i) | |
| 2444 self.assertTrue('compress' in ops) | |
| 2445 self.assertTrue('uncompress' in ops) | |
| 2446 self.assertTrue('is-compressed' in ops) | |
| 2447 self.assertEqual(0, DoGet(_REMOTE, '/instances/%s/attachments/dicom-as-json/is-compressed' % i)) | |
| 2448 DoPost(_REMOTE, '/instances/%s/attachments/dicom-as-json/verify-md5' % i) | |
| 2449 | |
| 2450 DoPost(_REMOTE, '/instances/%s/attachments/dicom-as-json/compress' % i) | |
| 2451 DoPost(_REMOTE, '/instances/%s/attachments/dicom-as-json/verify-md5' % i) | |
| 2452 self.assertEqual(1, DoGet(_REMOTE, '/instances/%s/attachments/dicom-as-json/is-compressed' % i)) | |
| 2453 self.assertLess(cs, DoGet(_REMOTE, '/statistics')['TotalDiskSize']) | |
| 2454 self.assertEqual(us, DoGet(_REMOTE, '/statistics')['TotalUncompressedSize']) | |
| 2455 self.assertGreater(len(data), len(DoGetRaw(_REMOTE, '/instances/%s/attachments/dicom-as-json/compressed-data' % i)[1])) | |
| 2456 self.assertGreater(size, DoGet(_REMOTE, '/instances/%s/attachments/dicom-as-json/compressed-size' % i)) | |
| 2457 self.assertEqual(size, DoGet(_REMOTE, '/instances/%s/attachments/dicom-as-json/size' % i)) | |
| 2458 self.assertEqual(md5, DoGet(_REMOTE, '/instances/%s/attachments/dicom-as-json/md5' % i)) | |
| 2459 self.assertNotEqual(md5, DoGet(_REMOTE, '/instances/%s/attachments/dicom-as-json/compressed-md5' % i)) | |
| 2460 | |
| 2461 DoPost(_REMOTE, '/instances/%s/attachments/dicom-as-json/uncompress' % i) | |
| 2462 DoPost(_REMOTE, '/instances/%s/attachments/dicom-as-json/verify-md5' % i) | |
| 2463 self.assertEqual(0, DoGet(_REMOTE, '/instances/%s/attachments/dicom-as-json/is-compressed' % i)) | |
| 2464 self.assertEqual(data, DoGetRaw(_REMOTE, '/instances/%s/attachments/dicom-as-json/compressed-data' % i)[1]) | |
| 2465 self.assertEqual(size, DoGet(_REMOTE, '/instances/%s/attachments/dicom-as-json/compressed-size' % i)) | |
| 2466 self.assertEqual(size, DoGet(_REMOTE, '/instances/%s/attachments/dicom-as-json/size' % i)) | |
| 2467 self.assertEqual(md5, DoGet(_REMOTE, '/instances/%s/attachments/dicom-as-json/md5' % i)) | |
| 2468 self.assertEqual(md5, DoGet(_REMOTE, '/instances/%s/attachments/dicom-as-json/compressed-md5' % i)) | |
| 2469 self.assertEqual(cs, DoGet(_REMOTE, '/statistics')['TotalDiskSize']) | |
| 2470 self.assertEqual(us, DoGet(_REMOTE, '/statistics')['TotalUncompressedSize']) | |
| 53 | 2471 |
| 2472 | |
| 2473 def test_ordered_slices(self): | |
| 2474 i = UploadInstance(_REMOTE, 'Multiframe.dcm')['ID'] | |
| 2475 s = DoGet(_REMOTE, '/instances/%s' % i)['ParentSeries'] | |
| 2476 o = DoGet(_REMOTE, '/series/%s/ordered-slices' % s) | |
| 2477 self.assertEqual('Sequence', o['Type']) | |
| 2478 self.assertEqual(1, len(o['Dicom'])) | |
| 2479 self.assertEqual('/instances/9e05eb0a-18b6268c-e0d36085-8ddab517-3b5aec02/file', o['Dicom'][0]) | |
| 2480 self.assertEqual(76, len(o['Slices'])) | |
| 2481 for j in range(76): | |
| 2482 self.assertEqual('/instances/9e05eb0a-18b6268c-e0d36085-8ddab517-3b5aec02/frames/%d' % j, o['Slices'][j]) | |
| 2483 | |
| 68 | 2484 self.assertEqual(1, len(o['SlicesShort'])) |
| 2485 self.assertEqual('9e05eb0a-18b6268c-e0d36085-8ddab517-3b5aec02', o['SlicesShort'][0][0]) | |
| 2486 self.assertEqual(0, o['SlicesShort'][0][1]) | |
| 2487 self.assertEqual(76, o['SlicesShort'][0][2]) | |
| 2488 | |
| 53 | 2489 i = UploadInstance(_REMOTE, 'Brainix/Epi/IM-0001-0001.dcm')['ID'] |
| 2490 j = UploadInstance(_REMOTE, 'Brainix/Epi/IM-0001-0002.dcm')['ID'] | |
| 2491 k = UploadInstance(_REMOTE, 'Brainix/Epi/IM-0001-0003.dcm')['ID'] | |
| 2492 s = DoGet(_REMOTE, '/instances/%s' % i)['ParentSeries'] | |
| 2493 o = DoGet(_REMOTE, '/series/%s/ordered-slices' % s) | |
| 2494 | |
| 2495 self.assertEqual('Volume', o['Type']) | |
| 2496 self.assertEqual(3, len(o['Dicom'])) | |
| 2497 self.assertEqual(3, len(o['Slices'])) | |
| 2498 self.assertEqual('/instances/%s/file' % i, o['Dicom'][2]) | |
| 2499 self.assertEqual('/instances/%s/file' % j, o['Dicom'][1]) | |
| 2500 self.assertEqual('/instances/%s/file' % k, o['Dicom'][0]) | |
| 2501 self.assertEqual('/instances/%s/frames/0' % i, o['Slices'][2]) | |
| 2502 self.assertEqual('/instances/%s/frames/0' % j, o['Slices'][1]) | |
| 2503 self.assertEqual('/instances/%s/frames/0' % k, o['Slices'][0]) | |
| 2504 | |
| 68 | 2505 self.assertEqual(3, len(o['SlicesShort'])) |
| 2506 self.assertEqual(k, o['SlicesShort'][0][0]) | |
| 2507 self.assertEqual(0, o['SlicesShort'][0][1]) | |
| 2508 self.assertEqual(1, o['SlicesShort'][0][2]) | |
| 2509 self.assertEqual(j, o['SlicesShort'][1][0]) | |
| 2510 self.assertEqual(0, o['SlicesShort'][1][1]) | |
| 2511 self.assertEqual(1, o['SlicesShort'][1][2]) | |
| 2512 self.assertEqual(i, o['SlicesShort'][2][0]) | |
| 2513 self.assertEqual(0, o['SlicesShort'][2][1]) | |
| 2514 self.assertEqual(1, o['SlicesShort'][2][2]) | |
| 2515 | |
| 53 | 2516 i = UploadInstance(_REMOTE, 'Beaufix/IM-0001-0001.dcm')['ID'] |
| 2517 j = UploadInstance(_REMOTE, 'Beaufix/IM-0001-0002.dcm')['ID'] | |
| 2518 s = DoGet(_REMOTE, '/instances/%s' % i)['ParentSeries'] | |
| 2519 o = DoGet(_REMOTE, '/series/%s/ordered-slices' % s) | |
| 2520 | |
| 2521 self.assertEqual('Sequence', o['Type']) | |
| 2522 self.assertEqual(2, len(o['Dicom'])) | |
| 2523 self.assertEqual(2, len(o['Slices'])) | |
| 2524 self.assertEqual('/instances/%s/file' % i, o['Dicom'][0]) | |
| 2525 self.assertEqual('/instances/%s/file' % j, o['Dicom'][1]) | |
| 2526 self.assertEqual('/instances/%s/frames/0' % i, o['Slices'][0]) | |
| 2527 self.assertEqual('/instances/%s/frames/0' % j, o['Slices'][1]) | |
|
54
c5f8a6b0d85e
test_incoming_movescu_accession
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
53
diff
changeset
|
2528 |
| 68 | 2529 self.assertEqual(2, len(o['SlicesShort'])) |
| 2530 self.assertEqual(i, o['SlicesShort'][0][0]) | |
| 2531 self.assertEqual(0, o['SlicesShort'][0][1]) | |
| 2532 self.assertEqual(1, o['SlicesShort'][0][2]) | |
| 2533 self.assertEqual(j, o['SlicesShort'][1][0]) | |
| 2534 self.assertEqual(0, o['SlicesShort'][1][1]) | |
| 2535 self.assertEqual(1, o['SlicesShort'][1][2]) | |
| 2536 | |
| 2537 | |
|
54
c5f8a6b0d85e
test_incoming_movescu_accession
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
53
diff
changeset
|
2538 |
|
c5f8a6b0d85e
test_incoming_movescu_accession
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
53
diff
changeset
|
2539 def test_incoming_movescu_accession(self): |
|
c5f8a6b0d85e
test_incoming_movescu_accession
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
53
diff
changeset
|
2540 UploadInstance(_REMOTE, 'Knee/T1/IM-0001-0001.dcm') |
|
c5f8a6b0d85e
test_incoming_movescu_accession
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
53
diff
changeset
|
2541 |
|
c5f8a6b0d85e
test_incoming_movescu_accession
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
53
diff
changeset
|
2542 self.assertEqual(0, len(DoGet(_LOCAL, '/patients'))) |
|
c5f8a6b0d85e
test_incoming_movescu_accession
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
53
diff
changeset
|
2543 CallMoveScu([ '--study', '-k', '0008,0052=STUDY', '-k', 'AccessionNumber=nope' ]) |
|
c5f8a6b0d85e
test_incoming_movescu_accession
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
53
diff
changeset
|
2544 self.assertEqual(0, len(DoGet(_LOCAL, '/patients'))) |
|
c5f8a6b0d85e
test_incoming_movescu_accession
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
53
diff
changeset
|
2545 CallMoveScu([ '--study', '-k', '0008,0052=PATIENT', '-k', 'AccessionNumber=A10003245599' ]) |
|
c5f8a6b0d85e
test_incoming_movescu_accession
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
53
diff
changeset
|
2546 self.assertEqual(0, len(DoGet(_LOCAL, '/patients'))) |
|
c5f8a6b0d85e
test_incoming_movescu_accession
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
53
diff
changeset
|
2547 CallMoveScu([ '--study', '-k', '0008,0052=STUDY', '-k', 'AccessionNumber=A10003245599' ]) |
|
c5f8a6b0d85e
test_incoming_movescu_accession
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
53
diff
changeset
|
2548 self.assertEqual(1, len(DoGet(_LOCAL, '/patients'))) |
|
c5f8a6b0d85e
test_incoming_movescu_accession
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
53
diff
changeset
|
2549 |
| 55 | 2550 |
| 2551 def test_dicom_to_json(self): | |
| 2552 i = UploadInstance(_REMOTE, 'PrivateMDNTags.dcm')['ID'] | |
|
60
cd3c7f70f139
test backward compatibility with Orthanc 0.9.4
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
59
diff
changeset
|
2553 j = UploadInstance(_REMOTE, 'PrivateTags.dcm')['ID'] |
|
cd3c7f70f139
test backward compatibility with Orthanc 0.9.4
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
59
diff
changeset
|
2554 |
|
cd3c7f70f139
test backward compatibility with Orthanc 0.9.4
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
59
diff
changeset
|
2555 t = DoGet(_REMOTE, '/instances/%s/tags?simplify' % i) |
|
cd3c7f70f139
test backward compatibility with Orthanc 0.9.4
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
59
diff
changeset
|
2556 with open(GetDatabasePath('PrivateMDNTagsSimplify.json'), 'r') as f: |
|
cd3c7f70f139
test backward compatibility with Orthanc 0.9.4
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
59
diff
changeset
|
2557 self.assertEqual(json.loads(f.read()), t) |
| 55 | 2558 |
| 2559 t = DoGet(_REMOTE, '/instances/%s/tags' % i) | |
| 2560 with open(GetDatabasePath('PrivateMDNTagsFull.json'), 'r') as f: | |
| 2561 self.assertEqual(json.loads(f.read()), t) | |
| 2562 | |
|
60
cd3c7f70f139
test backward compatibility with Orthanc 0.9.4
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
59
diff
changeset
|
2563 t = DoGet(_REMOTE, '/instances/%s/tags?simplify' % j) |
|
cd3c7f70f139
test backward compatibility with Orthanc 0.9.4
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
59
diff
changeset
|
2564 with open(GetDatabasePath('PrivateTagsSimplify.json'), 'r') as f: |
|
cd3c7f70f139
test backward compatibility with Orthanc 0.9.4
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
59
diff
changeset
|
2565 a = json.loads(f.read()) |
|
cd3c7f70f139
test backward compatibility with Orthanc 0.9.4
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
59
diff
changeset
|
2566 self.assertEqual(a, t) |
|
cd3c7f70f139
test backward compatibility with Orthanc 0.9.4
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
59
diff
changeset
|
2567 |
|
cd3c7f70f139
test backward compatibility with Orthanc 0.9.4
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
59
diff
changeset
|
2568 t = DoGet(_REMOTE, '/instances/%s/tags' % j) |
|
cd3c7f70f139
test backward compatibility with Orthanc 0.9.4
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
59
diff
changeset
|
2569 with open(GetDatabasePath('PrivateTagsFull.json'), 'r') as f: |
|
cd3c7f70f139
test backward compatibility with Orthanc 0.9.4
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
59
diff
changeset
|
2570 a = json.loads(f.read()) |
|
65
09fc27e0899a
patch for testing windows builds
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
64
diff
changeset
|
2571 |
|
09fc27e0899a
patch for testing windows builds
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
64
diff
changeset
|
2572 aa = json.dumps(a).replace('2e+022', '2e+22') |
|
09fc27e0899a
patch for testing windows builds
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
64
diff
changeset
|
2573 tt = json.dumps(t).replace('2e+022', '2e+22') |
|
09fc27e0899a
patch for testing windows builds
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
64
diff
changeset
|
2574 self.assertEqual(aa, tt) |
| 57 | 2575 |
| 2576 | |
| 2577 def test_batch_archive(self): | |
| 2578 UploadInstance(_REMOTE, 'Knee/T1/IM-0001-0001.dcm') | |
| 2579 UploadInstance(_REMOTE, 'Knee/T1/IM-0001-0002.dcm') | |
| 2580 UploadInstance(_REMOTE, 'Knee/T2/IM-0001-0001.dcm') | |
| 2581 UploadInstance(_REMOTE, 'Knee/T2/IM-0001-0002.dcm') | |
| 2582 UploadInstance(_REMOTE, 'Brainix/Epi/IM-0001-0001.dcm') | |
| 2583 UploadInstance(_REMOTE, 'Brainix/Epi/IM-0001-0002.dcm') | |
| 2584 UploadInstance(_REMOTE, 'Brainix/Flair/IM-0001-0001.dcm') | |
| 2585 UploadInstance(_REMOTE, 'Brainix/Flair/IM-0001-0002.dcm') | |
| 2586 | |
| 2587 s = DoPost(_REMOTE, '/tools/create-archive', [ ]) | |
| 2588 z = zipfile.ZipFile(StringIO(s), "r") | |
| 2589 self.assertEqual(0, len(z.namelist())) | |
| 2590 | |
| 2591 # One patient | |
| 2592 s = DoPost(_REMOTE, '/tools/create-archive', [ 'ca29faea-b6a0e17f-067743a1-8b778011-a48b2a17' ]) | |
| 2593 z = zipfile.ZipFile(StringIO(s), "r") | |
| 2594 self.assertEqual(4, len(z.namelist())) | |
| 2595 | |
| 2596 # One patient + twice its study + one series from other patient | |
| 2597 s = DoPost(_REMOTE, '/tools/create-archive', [ | |
| 2598 'ca29faea-b6a0e17f-067743a1-8b778011-a48b2a17', | |
| 2599 '0a9b3153-2512774b-2d9580de-1fc3dcf6-3bd83918', | |
| 2600 '1e2c125c-411b8e86-3f4fe68e-a7584dd3-c6da78f0' | |
| 2601 ]) | |
| 2602 z = zipfile.ZipFile(StringIO(s), "r") | |
| 2603 self.assertEqual(6, len(z.namelist())) | |
| 2604 | |
| 2605 # One patient + one series + one instance | |
| 2606 s = DoPost(_REMOTE, '/tools/create-archive', [ | |
| 2607 'ca29faea-b6a0e17f-067743a1-8b778011-a48b2a17', | |
| 2608 '1e2c125c-411b8e86-3f4fe68e-a7584dd3-c6da78f0', | |
| 2609 '1d429ccb-bdcc78a1-7d129d6a-ba4966ed-fe4dbd87' | |
| 2610 ]) | |
| 2611 z = zipfile.ZipFile(StringIO(s), "r") | |
| 2612 self.assertEqual(7, len(z.namelist())) | |
|
59
84378ada15ab
test_decode_brainix_as_jpeg
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
58
diff
changeset
|
2613 |
|
84378ada15ab
test_decode_brainix_as_jpeg
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
58
diff
changeset
|
2614 |
|
84378ada15ab
test_decode_brainix_as_jpeg
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
58
diff
changeset
|
2615 def test_decode_brainix_as_jpeg(self): |
|
84378ada15ab
test_decode_brainix_as_jpeg
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
58
diff
changeset
|
2616 i = UploadInstance(_REMOTE, 'Brainix/Epi/IM-0001-0001.dcm')['ID'] |
|
84378ada15ab
test_decode_brainix_as_jpeg
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
58
diff
changeset
|
2617 |
|
84378ada15ab
test_decode_brainix_as_jpeg
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
58
diff
changeset
|
2618 j = GetImage(_REMOTE, '/instances/%s/preview' % i) |
|
84378ada15ab
test_decode_brainix_as_jpeg
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
58
diff
changeset
|
2619 self.assertEqual('PNG', j.format) |
|
84378ada15ab
test_decode_brainix_as_jpeg
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
58
diff
changeset
|
2620 self.assertEqual(j.size[0], 256) |
|
84378ada15ab
test_decode_brainix_as_jpeg
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
58
diff
changeset
|
2621 self.assertEqual(j.size[1], 256) |
|
84378ada15ab
test_decode_brainix_as_jpeg
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
58
diff
changeset
|
2622 |
|
84378ada15ab
test_decode_brainix_as_jpeg
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
58
diff
changeset
|
2623 j = GetImage(_REMOTE, '/instances/%s/preview' % i, headers = { 'Accept' : '*/*' }) |
|
84378ada15ab
test_decode_brainix_as_jpeg
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
58
diff
changeset
|
2624 self.assertEqual('PNG', j.format) |
|
84378ada15ab
test_decode_brainix_as_jpeg
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
58
diff
changeset
|
2625 |
|
84378ada15ab
test_decode_brainix_as_jpeg
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
58
diff
changeset
|
2626 j = GetImage(_REMOTE, '/instances/%s/preview' % i, headers = { 'Accept' : 'image/*' }) |
|
84378ada15ab
test_decode_brainix_as_jpeg
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
58
diff
changeset
|
2627 self.assertEqual('PNG', j.format) |
|
84378ada15ab
test_decode_brainix_as_jpeg
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
58
diff
changeset
|
2628 |
|
84378ada15ab
test_decode_brainix_as_jpeg
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
58
diff
changeset
|
2629 j = GetImage(_REMOTE, '/instances/%s/preview' % i, headers = { 'Accept' : 'image/png' }) |
|
84378ada15ab
test_decode_brainix_as_jpeg
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
58
diff
changeset
|
2630 self.assertEqual('PNG', j.format) |
|
84378ada15ab
test_decode_brainix_as_jpeg
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
58
diff
changeset
|
2631 |
|
84378ada15ab
test_decode_brainix_as_jpeg
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
58
diff
changeset
|
2632 j = GetImage(_REMOTE, '/instances/%s/preview' % i, headers = { 'Accept' : 'image/jpeg' }) |
|
84378ada15ab
test_decode_brainix_as_jpeg
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
58
diff
changeset
|
2633 self.assertEqual('JPEG', j.format) |
|
84378ada15ab
test_decode_brainix_as_jpeg
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
58
diff
changeset
|
2634 self.assertEqual(j.size[0], 256) |
|
84378ada15ab
test_decode_brainix_as_jpeg
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
58
diff
changeset
|
2635 self.assertEqual(j.size[1], 256) |
|
84378ada15ab
test_decode_brainix_as_jpeg
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
58
diff
changeset
|
2636 |
|
84378ada15ab
test_decode_brainix_as_jpeg
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
58
diff
changeset
|
2637 a = len(DoGet(_REMOTE, '/instances/%s/preview?quality=50' % i, headers = { 'Accept' : 'image/jpeg' })) |
|
84378ada15ab
test_decode_brainix_as_jpeg
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
58
diff
changeset
|
2638 b = len(DoGet(_REMOTE, '/instances/%s/preview' % i, headers = { 'Accept' : 'image/jpeg' })) |
|
84378ada15ab
test_decode_brainix_as_jpeg
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
58
diff
changeset
|
2639 self.assertLess(a, b) |
|
84378ada15ab
test_decode_brainix_as_jpeg
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
58
diff
changeset
|
2640 |
|
84378ada15ab
test_decode_brainix_as_jpeg
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
58
diff
changeset
|
2641 j = GetImage(_REMOTE, '/instances/%s/image-uint8' % i, headers = { 'Accept' : 'image/jpeg' }) |
|
84378ada15ab
test_decode_brainix_as_jpeg
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
58
diff
changeset
|
2642 self.assertEqual('JPEG', j.format) |
|
84378ada15ab
test_decode_brainix_as_jpeg
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
58
diff
changeset
|
2643 |
|
84378ada15ab
test_decode_brainix_as_jpeg
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
58
diff
changeset
|
2644 # 16bit encoding is not supported with JPEG |
|
84378ada15ab
test_decode_brainix_as_jpeg
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
58
diff
changeset
|
2645 self.assertRaises(Exception, lambda: GetImage(_REMOTE, '/instances/%s/image-uint16' % i, headers = { 'Accept' : 'image/jpeg' })) |
|
84378ada15ab
test_decode_brainix_as_jpeg
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
58
diff
changeset
|
2646 self.assertRaises(Exception, lambda: GetImage(_REMOTE, '/instances/%s/image-int16' % i, headers = { 'Accept' : 'image/jpeg' })) |
|
84378ada15ab
test_decode_brainix_as_jpeg
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
58
diff
changeset
|
2647 |
|
84378ada15ab
test_decode_brainix_as_jpeg
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
58
diff
changeset
|
2648 # No matching content type |
|
84378ada15ab
test_decode_brainix_as_jpeg
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
58
diff
changeset
|
2649 self.assertRaises(Exception, lambda: GetImage(_REMOTE, '/instances/%s/preview' % i, headers = { 'Accept' : 'application/pdf' })) |
|
69
83fd88230097
test_media_encodings
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
68
diff
changeset
|
2650 |
|
83fd88230097
test_media_encodings
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
68
diff
changeset
|
2651 |
|
83fd88230097
test_media_encodings
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
68
diff
changeset
|
2652 |
|
83fd88230097
test_media_encodings
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
68
diff
changeset
|
2653 def test_media_encodings(self): |
|
83fd88230097
test_media_encodings
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
68
diff
changeset
|
2654 ascii = UploadInstance(_REMOTE, 'Knee/T1/IM-0001-0001.dcm')['ID'] |
|
83fd88230097
test_media_encodings
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
68
diff
changeset
|
2655 latin1 = UploadInstance(_REMOTE, 'Brainix/Epi/IM-0001-0001.dcm')['ID'] |
|
83fd88230097
test_media_encodings
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
68
diff
changeset
|
2656 latin2 = UploadInstance(_REMOTE, 'MarekLatin2.dcm')['ID'] |
|
83fd88230097
test_media_encodings
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
68
diff
changeset
|
2657 |
|
83fd88230097
test_media_encodings
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
68
diff
changeset
|
2658 tmp = DoPost(_REMOTE, '/tools/create-media', [ascii,latin1,latin2]) |
|
83fd88230097
test_media_encodings
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
68
diff
changeset
|
2659 z = zipfile.ZipFile(StringIO(tmp), "r") |
|
83fd88230097
test_media_encodings
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
68
diff
changeset
|
2660 |
|
83fd88230097
test_media_encodings
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
68
diff
changeset
|
2661 self.assertEqual(4, len(z.namelist())) |
|
83fd88230097
test_media_encodings
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
68
diff
changeset
|
2662 self.assertTrue('IMAGES/IM0' in z.namelist()) |
|
83fd88230097
test_media_encodings
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
68
diff
changeset
|
2663 self.assertTrue('IMAGES/IM1' in z.namelist()) |
|
83fd88230097
test_media_encodings
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
68
diff
changeset
|
2664 self.assertTrue('IMAGES/IM2' in z.namelist()) |
|
83fd88230097
test_media_encodings
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
68
diff
changeset
|
2665 self.assertTrue('DICOMDIR' in z.namelist()) |
|
83fd88230097
test_media_encodings
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
68
diff
changeset
|
2666 |
|
83fd88230097
test_media_encodings
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
68
diff
changeset
|
2667 try: |
|
83fd88230097
test_media_encodings
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
68
diff
changeset
|
2668 os.remove('/tmp/DICOMDIR') |
|
83fd88230097
test_media_encodings
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
68
diff
changeset
|
2669 except: |
|
83fd88230097
test_media_encodings
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
68
diff
changeset
|
2670 # The file does not exist |
|
83fd88230097
test_media_encodings
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
68
diff
changeset
|
2671 pass |
|
83fd88230097
test_media_encodings
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
68
diff
changeset
|
2672 |
|
83fd88230097
test_media_encodings
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
68
diff
changeset
|
2673 z.extract('DICOMDIR', '/tmp') |
|
83fd88230097
test_media_encodings
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
68
diff
changeset
|
2674 a = subprocess.check_output([ FindExecutable('dciodvfy'), '/tmp/DICOMDIR' ], |
|
83fd88230097
test_media_encodings
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
68
diff
changeset
|
2675 stderr = subprocess.STDOUT).split('\n') |
|
83fd88230097
test_media_encodings
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
68
diff
changeset
|
2676 |
|
83fd88230097
test_media_encodings
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
68
diff
changeset
|
2677 a = subprocess.check_output([ FindExecutable('dcentvfy'), '/tmp/DICOMDIR' ], |
|
83fd88230097
test_media_encodings
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
68
diff
changeset
|
2678 stderr = subprocess.STDOUT).split('\n') |
|
83fd88230097
test_media_encodings
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
68
diff
changeset
|
2679 self.assertEqual(1, len(a)) |
|
83fd88230097
test_media_encodings
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
68
diff
changeset
|
2680 self.assertEqual('', a[0]) |
|
83fd88230097
test_media_encodings
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
68
diff
changeset
|
2681 |
|
83fd88230097
test_media_encodings
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
68
diff
changeset
|
2682 a = subprocess.check_output([ FindExecutable('dcm2xml'), '/tmp/DICOMDIR' ]) |
|
83fd88230097
test_media_encodings
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
68
diff
changeset
|
2683 self.assertTrue(re.search('1.3.46.670589.11.17521.5.0.3124.2008081908590448738', a) != None) |
|
83fd88230097
test_media_encodings
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
68
diff
changeset
|
2684 self.assertTrue(re.search('1.3.46.670589.11.0.0.11.4.2.0.8743.5.5396.2006120114333648576', a) != None) |
|
83fd88230097
test_media_encodings
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
68
diff
changeset
|
2685 self.assertTrue(re.search('1.2.826.0.1.3680043.2.1569.1.4.323026757.1700.1399452091.57', a) != None) |
|
83fd88230097
test_media_encodings
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
68
diff
changeset
|
2686 |
|
83fd88230097
test_media_encodings
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
68
diff
changeset
|
2687 os.remove('/tmp/DICOMDIR') |