Mercurial > hg > orthanc-tests
annotate Tests/Tests.py @ 379:097329b67509
fix tests if StorageCompression is true
| author | Sebastien Jodogne <s.jodogne@gmail.com> |
|---|---|
| date | Fri, 12 Feb 2021 15:52:10 +0100 |
| parents | a4b8450a1158 |
| children | b9adc7d06347 |
| rev | line source |
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| 22 | 1 #!/usr/bin/env python |
| 2 # -*- coding: utf-8 -*- | |
| 3 | |
| 4 | |
| 3 | 5 # Orthanc - A Lightweight, RESTful DICOM Store |
| 73 | 6 # Copyright (C) 2012-2016 Sebastien Jodogne, Medical Physics |
| 3 | 7 # Department, University Hospital of Liege, Belgium |
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8 # Copyright (C) 2017-2021 Osimis S.A., Belgium |
| 3 | 9 # |
| 10 # This program is free software: you can redistribute it and/or | |
| 11 # modify it under the terms of the GNU General Public License as | |
| 12 # published by the Free Software Foundation, either version 3 of the | |
| 13 # License, or (at your option) any later version. | |
| 14 # | |
| 15 # This program is distributed in the hope that it will be useful, but | |
| 16 # WITHOUT ANY WARRANTY; without even the implied warranty of | |
| 17 # MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU | |
| 18 # General Public License for more details. | |
| 19 # | |
| 20 # You should have received a copy of the GNU General Public License | |
| 21 # along with this program. If not, see <http://www.gnu.org/licenses/>. | |
| 22 | |
| 23 | |
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24 import base64 |
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25 import bz2 |
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26 import copy |
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27 import pprint |
| 14 | 28 import tempfile |
| 3 | 29 import unittest |
| 295 | 30 import shutil |
| 3 | 31 |
| 11 | 32 from PIL import ImageChops |
| 3 | 33 from Toolbox import * |
| 13 | 34 from xml.dom import minidom |
| 312 | 35 from datetime import datetime |
| 3 | 36 |
| 37 _LOCAL = None | |
| 38 _REMOTE = None | |
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39 _DOCKER = False |
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40 |
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41 |
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42 def SetOrthancParameters(local, remote, withinDocker): |
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43 global _LOCAL, _REMOTE, _DOCKER |
| 3 | 44 _LOCAL = local |
| 45 _REMOTE = remote | |
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46 _DOCKER = withinDocker |
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47 |
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48 |
| 14 | 49 def ExtractDicomTags(rawDicom, tags): |
| 50 with tempfile.NamedTemporaryFile(delete = True) as f: | |
| 51 f.write(rawDicom) | |
| 52 f.flush() | |
| 45 | 53 data = subprocess.check_output([ FindExecutable('dcm2xml'), f.name ]) |
| 14 | 54 |
| 55 result = [] | |
| 56 for tag in tags: | |
| 57 match = re.search('<element[^>]+name="%s">([^>]*)</element>' % tag, data) | |
| 58 if match == None: | |
| 59 result.append('') | |
| 60 else: | |
| 61 result.append(match.group(1)) | |
| 62 | |
| 63 return result | |
| 64 | |
| 65 | |
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66 def CompareLists(a, b): |
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67 if len(a) != len(b): |
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68 return False |
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69 |
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70 for i in range(len(a)): |
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71 d = a[i] - b[i] |
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72 if abs(d) >= 0.51: # Add some tolerance for rounding errors |
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73 return False |
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74 |
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75 return True |
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76 |
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77 |
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78 def CompareTags(a, b, tagsToIgnore): |
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79 for i in tagsToIgnore: |
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80 if i in a: |
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81 del a[i] |
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82 if i in b: |
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83 del b[i] |
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84 |
| 123 | 85 if a.keys() == b.keys(): |
| 86 return True | |
| 87 else: | |
| 88 print('Mismatch in tags: %s' % str(set(a.keys()) ^ set(b.keys()))) | |
| 89 return False | |
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90 |
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91 |
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92 def CallFindScu(args): |
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93 p = subprocess.Popen([ FindExecutable('findscu'), |
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94 '-P', '-aec', _REMOTE['DicomAet'], '-aet', _LOCAL['DicomAet'], |
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95 _REMOTE['Server'], str(_REMOTE['DicomPort']) ] + args, |
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96 stderr=subprocess.PIPE) |
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97 return p.communicate()[1] |
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98 |
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99 |
| 142 | 100 def GetMoveScuCommand(): |
| 101 return [ | |
| 102 FindExecutable('movescu'), | |
| 103 '--move', _LOCAL['DicomAet'], # Target AET (i.e. storescp) | |
| 104 '--call', _REMOTE['DicomAet'], # Called AET (i.e. Orthanc) | |
| 105 '--aetitle', _LOCAL['DicomAet'], # Calling AET (i.e. storescp) | |
| 106 _REMOTE['Server'], | |
| 107 str(_REMOTE['DicomPort']) | |
| 108 ] | |
| 109 | |
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110 |
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111 def CallMoveScu(args): |
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112 try: |
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113 subprocess.check_call(GetMoveScuCommand() + args, |
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114 stderr = subprocess.PIPE) |
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115 except subprocess.CalledProcessError as e: |
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116 # The error code "69" corresponds to "EXITCODE_CMOVE_ERROR", |
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117 # that has been introduced in DCMTK 3.6.2. This error code is |
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118 # expected by some tests that try and C-MOVE non-existing |
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119 # DICOM instances. |
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120 # https://groups.google.com/d/msg/orthanc-users/DCRc5NeSCbM/DG-pSWj-BwAJ |
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121 if e.returncode != 69: |
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122 raise e |
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123 |
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124 |
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125 def GenerateTestSequence(): |
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126 return [ |
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127 { |
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128 'StudyDescription': 'Hello^', |
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129 'ReferencedStudySequence' : [ |
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130 { |
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131 'StudyDescription': 'Toto', |
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132 }, |
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133 { |
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134 'StudyDescription': 'Tata', |
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135 }, |
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136 ] |
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137 }, |
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138 { |
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139 'StudyDescription': 'Sébastien^', |
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140 'StudyDate' : '19700202', |
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141 } |
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142 ] |
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143 |
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144 |
| 3 | 145 class Orthanc(unittest.TestCase): |
| 146 def setUp(self): | |
| 83 | 147 if (sys.version_info >= (3, 0)): |
| 148 # Remove annoying warnings about unclosed socket in Python 3 | |
| 149 import warnings | |
| 150 warnings.simplefilter("ignore", ResourceWarning) | |
| 151 | |
| 3 | 152 DropOrthanc(_LOCAL) |
| 153 DropOrthanc(_REMOTE) | |
| 174 | 154 UninstallLuaCallbacks(_REMOTE) |
| 312 | 155 #print("%s: In test %s" % (datetime.now(), self._testMethodName)) |
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156 |
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157 def AssertSameImages(self, truth, url): |
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158 im = GetImage(_REMOTE, url) |
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159 self.assertTrue(CompareLists(truth, im.getdata())) |
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160 |
| 3 | 161 |
| 162 def test_system(self): | |
| 177 | 163 self.assertTrue('Version' in DoGet(_REMOTE, '/system')) |
| 164 self.assertEqual('0', DoGet(_REMOTE, '/statistics')['TotalDiskSize']) | |
| 165 self.assertEqual('0', DoGet(_REMOTE, '/statistics')['TotalUncompressedSize']) | |
| 166 | |
| 167 systemInfo = DoGet(_REMOTE, '/system') | |
| 168 if systemInfo["Version"] == "mainline": | |
| 169 print "Skipping version checks since you're currently in mainline" | |
| 170 return | |
| 171 | |
| 173 | 172 self.assertTrue(IsOrthancVersionAbove(_LOCAL, 0, 8, 6)) |
| 173 self.assertFalse(IsOrthancVersionAbove(_LOCAL, 0, 8, 7)) | |
| 174 self.assertTrue(IsOrthancVersionAbove(_LOCAL, 0, 7, 6)) | |
| 175 self.assertFalse(IsOrthancVersionAbove(_LOCAL, 0, 9, 6)) | |
| 176 self.assertFalse(IsOrthancVersionAbove(_LOCAL, 1, 8, 6)) | |
| 3 | 177 |
| 178 def test_upload(self): | |
| 173 | 179 self.assertEqual('0', DoGet(_REMOTE, '/statistics')['TotalDiskSize']) |
| 180 self.assertEqual('0', DoGet(_REMOTE, '/statistics')['TotalUncompressedSize']) | |
| 181 | |
| 182 sizeDummyCT = 2472 | |
| 183 sizeOverwrite = 2476 | |
| 184 instance = '66a662ce-7430e543-bad44d47-0dc5a943-ec7a538d' | |
| 185 | |
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186 # This file has *no* pixel data => "dicom-until-pixel-data" is not created |
| 3 | 187 u = UploadInstance(_REMOTE, 'DummyCT.dcm') |
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188 isCompressed = (DoGet(_REMOTE, '/instances/%s/attachments/dicom/is-compressed' % u['ID']) != 0) |
| 183 | 189 self.assertEqual(instance, u['ID']) |
| 3 | 190 self.assertEqual('Success', u['Status']) |
| 173 | 191 |
| 183 | 192 if True: |
| 193 # New test for Orthanc 1.4.3 | |
| 194 self.assertEqual('f2635388-f01d497a-15f7c06b-ad7dba06-c4c599fe', u['ParentSeries']) | |
| 195 self.assertEqual('b9c08539-26f93bde-c81ab0d7-bffaf2cb-a4d0bdd0', u['ParentStudy']) | |
| 196 self.assertEqual('6816cb19-844d5aee-85245eba-28e841e6-2414fae2', u['ParentPatient']) | |
| 197 | |
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198 if IsOrthancVersionAbove(_REMOTE, 1, 9, 1): |
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199 self.assertRaises(Exception, lambda: DoGet(_REMOTE, '/instances/%s/attachments/dicom-as-json' % instance)) |
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200 self.assertRaises(Exception, lambda: DoGet(_REMOTE, '/instances/%s/attachments/dicom-until-pixel-data' % instance)) |
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201 j = 0 |
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202 else: |
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203 self.assertRaises(Exception, lambda: DoGet(_REMOTE, '/instances/%s/attachments/dicom-until-pixel-data' % instance)) |
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204 j = int(DoGet(_REMOTE, '/instances/%s/attachments/dicom-as-json/size' % instance)) |
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205 |
| 173 | 206 s = sizeDummyCT + j |
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207 |
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208 if isCompressed: |
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209 self.assertGreater(s, int(DoGet(_REMOTE, '/statistics')['TotalDiskSize'])) |
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210 else: |
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211 self.assertEqual(s, int(DoGet(_REMOTE, '/statistics')['TotalDiskSize'])) |
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212 |
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213 self.assertEqual(s, int(DoGet(_REMOTE, '/statistics')['TotalUncompressedSize'])) |
| 173 | 214 |
| 3 | 215 u = UploadInstance(_REMOTE, 'DummyCT.dcm') |
| 216 self.assertEqual(1, len(DoGet(_REMOTE, '/patients'))) | |
| 217 self.assertEqual(1, len(DoGet(_REMOTE, '/studies'))) | |
| 218 self.assertEqual(1, len(DoGet(_REMOTE, '/series'))) | |
| 219 self.assertEqual(1, len(DoGet(_REMOTE, '/instances'))) | |
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220 |
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221 if isCompressed: |
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222 self.assertGreater(s, int(DoGet(_REMOTE, '/statistics')['TotalDiskSize'])) |
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223 else: |
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224 self.assertEqual(s, int(DoGet(_REMOTE, '/statistics')['TotalDiskSize'])) |
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225 |
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226 self.assertEqual(s, int(DoGet(_REMOTE, '/statistics')['TotalUncompressedSize'])) |
| 173 | 227 |
| 228 i = DoGet(_REMOTE, '/instances/%s/simplified-tags' % instance) | |
| 3 | 229 self.assertEqual('20070101', i['StudyDate']) |
| 173 | 230 self.assertEqual('KNIX', i['PatientName']) |
| 231 | |
| 232 if IsOrthancVersionAbove(_REMOTE, 1, 4, 2): | |
| 233 # Overwriting | |
| 234 self.assertEqual('Success', u['Status']) | |
| 235 else: | |
| 236 self.assertEqual('AlreadyStored', u['Status']) | |
| 237 | |
| 238 u = UploadInstance(_REMOTE, 'DummyCT-overwrite.dcm') | |
| 239 self.assertEqual(1, len(DoGet(_REMOTE, '/patients'))) | |
| 240 self.assertEqual(1, len(DoGet(_REMOTE, '/studies'))) | |
| 241 self.assertEqual(1, len(DoGet(_REMOTE, '/series'))) | |
| 242 self.assertEqual(1, len(DoGet(_REMOTE, '/instances'))) | |
| 243 | |
| 244 if IsOrthancVersionAbove(_REMOTE, 1, 4, 2): | |
| 245 # Overwriting | |
| 246 self.assertEqual('Success', u['Status']) | |
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247 if IsOrthancVersionAbove(_REMOTE, 1, 9, 1): |
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248 j2 = 0 |
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249 else: |
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250 j2 = int(DoGet(_REMOTE, '/instances/%s/attachments/dicom-as-json/size' % instance)) |
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251 self.assertNotEqual(j, j2) |
| 173 | 252 s2 = sizeOverwrite + j2 |
| 253 self.assertNotEqual(s, s2) | |
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254 if isCompressed: |
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255 self.assertGreater(s2, int(DoGet(_REMOTE, '/statistics')['TotalDiskSize'])) |
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256 else: |
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257 self.assertEqual(s2, int(DoGet(_REMOTE, '/statistics')['TotalDiskSize'])) |
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258 |
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259 self.assertEqual(s2, int(DoGet(_REMOTE, '/statistics')['TotalUncompressedSize'])) |
| 173 | 260 i = DoGet(_REMOTE, '/instances/%s/simplified-tags' % instance) |
| 261 self.assertEqual('ANOTHER', i['PatientName']) | |
| 262 else: | |
| 263 self.assertEqual('AlreadyStored', u['Status']) | |
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264 self.assertEqual(s, int(DoGet(_REMOTE, '/statistics')['TotalDiskSize'])) |
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265 self.assertEqual(s, int(DoGet(_REMOTE, '/statistics')['TotalUncompressedSize'])) |
| 3 | 266 |
| 5 | 267 def test_upload_2(self): |
| 3 | 268 i = UploadInstance(_REMOTE, 'DummyCT.dcm')['ID'] |
| 269 instance = DoGet(_REMOTE, '/instances/%s' % i) | |
| 270 self.assertEqual(i, instance['ID']) | |
| 271 self.assertEqual('1.2.840.113619.2.176.2025.1499492.7040.1171286242.109', | |
| 272 instance['MainDicomTags']['SOPInstanceUID']) | |
| 273 | |
| 274 series = DoGet(_REMOTE, '/series/%s' % instance['ParentSeries']) | |
| 275 self.assertEqual('1.2.840.113619.2.176.2025.1499492.7391.1171285944.394', | |
| 276 series['MainDicomTags']['SeriesInstanceUID']) | |
| 277 | |
| 278 study = DoGet(_REMOTE, '/studies/%s' % series['ParentStudy']) | |
| 279 self.assertEqual('1.2.840.113619.2.176.2025.1499492.7391.1171285944.390', | |
| 280 study['MainDicomTags']['StudyInstanceUID']) | |
| 281 | |
| 282 patient = DoGet(_REMOTE, '/patients/%s' % study['ParentPatient']) | |
| 283 self.assertEqual('ozp00SjY2xG', | |
| 284 patient['MainDicomTags']['PatientID']) | |
| 285 | |
| 286 dicom = DoGet(_REMOTE, '/instances/%s/file' % instance['ID']) | |
| 287 self.assertEqual(2472, len(dicom)) | |
| 288 self.assertEqual('3e29b869978b6db4886355a2b1132124', ComputeMD5(dicom)) | |
| 289 self.assertEqual(1, len(DoGet(_REMOTE, '/instances/%s/frames' % i))) | |
| 290 self.assertEqual('TWINOW', DoGet(_REMOTE, '/instances/%s/simplified-tags' % i)['StationName']) | |
| 291 self.assertEqual('TWINOW', DoGet(_REMOTE, '/instances/%s/tags' % i)['0008,1010']['Value']) | |
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292 self.assertEqual('TWINOW', DoGet(_REMOTE, '/instances/%s/tags?simplify' % i)['StationName']) |
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293 self.assertEqual('TWINOW', DoGet(_REMOTE, '/instances/%s/tags?short' % i)['0008,1010']) |
| 3 | 294 |
| 295 | |
| 5 | 296 def test_images(self): |
| 297 i = UploadInstance(_REMOTE, 'Phenix/IM-0001-0001.dcm')['ID'] | |
| 298 self.assertEqual(1, len(DoGet(_REMOTE, '/instances/%s/frames' % i))) | |
| 3 | 299 |
| 5 | 300 im = GetImage(_REMOTE, '/instances/%s/preview' % i) |
| 301 self.assertEqual("L", im.mode) | |
| 302 self.assertEqual(512, im.size[0]) | |
| 303 self.assertEqual(358, im.size[1]) | |
| 304 | |
| 305 im = GetImage(_REMOTE, '/instances/%s/image-uint8' % i) | |
| 306 self.assertEqual("L", im.mode) | |
| 307 self.assertEqual(512, im.size[0]) | |
| 308 self.assertEqual(358, im.size[1]) | |
| 309 | |
| 310 im = GetImage(_REMOTE, '/instances/%s/image-uint16' % i) | |
| 311 self.assertEqual(512, im.size[0]) | |
| 312 self.assertEqual(358, im.size[1]) | |
| 313 | |
| 314 im = GetImage(_REMOTE, '/instances/%s/frames/0/preview' % i) | |
| 315 self.assertEqual("L", im.mode) | |
| 316 self.assertEqual(512, im.size[0]) | |
| 317 self.assertEqual(358, im.size[1]) | |
| 318 | |
| 319 im = GetImage(_REMOTE, '/instances/%s/frames/0/image-uint8' % i) | |
| 320 self.assertEqual("L", im.mode) | |
| 321 self.assertEqual(512, im.size[0]) | |
| 322 self.assertEqual(358, im.size[1]) | |
| 323 | |
| 324 im = GetImage(_REMOTE, '/instances/%s/frames/0/image-uint16' % i) | |
| 325 self.assertEqual(512, im.size[0]) | |
| 326 self.assertEqual(358, im.size[1]) | |
| 64 | 327 |
| 328 # This is Little Endian Explicit | |
| 329 self.assertEqual('1.2.840.10008.1.2.1', DoGet(_REMOTE, '/instances/%s/header?simplify' % i)['TransferSyntaxUID']) | |
| 330 | |
| 6 | 331 |
| 332 def test_hierarchy(self): | |
| 333 UploadFolder(_REMOTE, 'Brainix/Epi') | |
| 334 UploadFolder(_REMOTE, 'Brainix/Flair') | |
| 335 UploadFolder(_REMOTE, 'Knee/T1') | |
| 336 UploadFolder(_REMOTE, 'Knee/T2') | |
| 337 | |
| 338 p = DoGet(_REMOTE, '/patients') | |
| 339 s = DoGet(_REMOTE, '/studies') | |
| 340 t = DoGet(_REMOTE, '/series') | |
| 341 self.assertEqual(2, len(p)) | |
| 342 self.assertEqual(2, len(s)) | |
| 343 self.assertEqual(4, len(t)) | |
| 344 self.assertEqual(94, len(DoGet(_REMOTE, '/instances'))) | |
| 345 | |
| 346 brainixPatient = '16738bc3-e47ed42a-43ce044c-a3414a45-cb069bd0' | |
| 347 brainixStudy = '27f7126f-4f66fb14-03f4081b-f9341db2-53925988' | |
| 348 brainixEpi = '2ac1316d-3e432022-62eabff2-c59f5475-9b1ac3f8' | |
| 349 brainixFlair = '1e2c125c-411b8e86-3f4fe68e-a7584dd3-c6da78f0' | |
| 350 | |
| 351 kneePatient = 'ca29faea-b6a0e17f-067743a1-8b778011-a48b2a17' | |
| 352 kneeStudy = '0a9b3153-2512774b-2d9580de-1fc3dcf6-3bd83918' | |
| 353 kneeT1 = '6de73705-c4e65c1b-9d9ea1b5-cabcd8e7-f15e4285' | |
| 354 kneeT2 = 'bbf7a453-0d34251a-03663b55-46bb31b9-ffd74c59' | |
| 355 | |
| 356 self.assertTrue(brainixPatient in p) | |
| 357 self.assertTrue(kneePatient in p) | |
| 358 self.assertTrue(brainixStudy in s) | |
| 359 self.assertTrue(kneeStudy in s) | |
| 360 self.assertTrue(brainixEpi in t) | |
| 361 self.assertTrue(brainixFlair in t) | |
| 362 self.assertTrue(kneeT1 in t) | |
| 363 self.assertTrue(kneeT2 in t) | |
| 364 | |
| 365 self.assertEqual(44, len(DoGet(_REMOTE, '/patients/%s/instances' % brainixPatient))) | |
| 366 self.assertEqual(2, len(DoGet(_REMOTE, '/patients/%s/series' % brainixPatient))) | |
| 367 self.assertEqual(1, len(DoGet(_REMOTE, '/patients/%s/studies' % brainixPatient))) | |
| 368 | |
| 369 self.assertEqual(50, len(DoGet(_REMOTE, '/patients/%s/instances' % kneePatient))) | |
| 370 self.assertEqual(2, len(DoGet(_REMOTE, '/patients/%s/series' % kneePatient))) | |
| 371 self.assertEqual(1, len(DoGet(_REMOTE, '/patients/%s/studies' % kneePatient))) | |
| 372 | |
| 373 self.assertEqual(2, len(DoGet(_REMOTE, '/studies/%s/series' % brainixStudy))) | |
| 374 self.assertEqual(44, len(DoGet(_REMOTE, '/studies/%s/instances' % brainixStudy))) | |
| 375 | |
| 376 self.assertEqual(2, len(DoGet(_REMOTE, '/studies/%s/series' % kneeStudy))) | |
| 377 self.assertEqual(50, len(DoGet(_REMOTE, '/studies/%s/instances' % kneeStudy))) | |
| 378 | |
| 379 self.assertEqual(22, len(DoGet(_REMOTE, '/series/%s/instances' % brainixEpi))) | |
| 380 self.assertEqual(22, len(DoGet(_REMOTE, '/series/%s/instances' % brainixFlair))) | |
| 381 self.assertEqual(24, len(DoGet(_REMOTE, '/series/%s/instances' % kneeT1))) | |
| 382 self.assertEqual(26, len(DoGet(_REMOTE, '/series/%s/instances' % kneeT2))) | |
| 383 | |
| 384 for patient in p: | |
| 385 for study in DoGet(_REMOTE, '/patients/%s/studies' % patient): | |
| 386 self.assertEqual(patient, study['ParentPatient']) | |
| 387 for series in DoGet(_REMOTE, '/studies/%s/series' % study['ID']): | |
| 388 self.assertEqual(study['ID'], series['ParentStudy']) | |
| 211 | 389 self.assertEqual('Unknown', series['Status']) |
| 6 | 390 for instance in DoGet(_REMOTE, '/series/%s/instances' % series['ID']): |
| 391 self.assertEqual(series['ID'], instance['ParentSeries']) | |
| 392 | |
| 393 self.assertEqual(json.dumps(DoGet(_REMOTE, '/instances/%s/attachments/dicom-as-json/data' % instance['ID'])), | |
| 394 json.dumps(DoGet(_REMOTE, '/instances/%s/tags' % instance['ID']))) | |
| 395 | |
| 396 | |
| 397 r = DoDelete(_REMOTE, "/studies/%s" % brainixStudy)['RemainingAncestor'] | |
| 398 self.assertEqual(1, len(DoGet(_REMOTE, '/patients'))) | |
| 399 self.assertEqual(1, len(DoGet(_REMOTE, '/studies'))) | |
| 400 self.assertEqual(2, len(DoGet(_REMOTE, '/series'))) | |
| 401 self.assertEqual(50, len(DoGet(_REMOTE, '/instances'))) | |
| 402 self.assertEqual(None, r) | |
| 403 | |
| 404 r = DoDelete(_REMOTE, "/series/%s" % kneeT2)['RemainingAncestor'] | |
| 405 self.assertEqual(1, len(DoGet(_REMOTE, '/patients'))) | |
| 406 self.assertEqual(1, len(DoGet(_REMOTE, '/studies'))) | |
| 407 self.assertEqual(1, len(DoGet(_REMOTE, '/series'))) | |
| 408 self.assertEqual(24, len(DoGet(_REMOTE, '/instances'))) | |
| 409 self.assertEqual('Study', r['Type']) | |
| 410 self.assertEqual(kneeStudy, r['ID']) | |
| 411 | |
| 412 r = DoDelete(_REMOTE, "/instances/%s" % DoGet(_REMOTE, '/instances')[0])['RemainingAncestor'] | |
| 413 self.assertEqual(1, len(DoGet(_REMOTE, '/patients'))) | |
| 414 self.assertEqual(1, len(DoGet(_REMOTE, '/studies'))) | |
| 415 self.assertEqual(1, len(DoGet(_REMOTE, '/series'))) | |
| 416 self.assertEqual(23, len(DoGet(_REMOTE, '/instances'))) | |
| 417 self.assertEqual('Series', r['Type']) | |
| 418 self.assertEqual(kneeT1, r['ID']) | |
| 419 | |
| 420 r = DoDelete(_REMOTE, "/patients/%s" % kneePatient)['RemainingAncestor'] | |
| 421 self.assertEqual(0, len(DoGet(_REMOTE, '/patients'))) | |
| 422 self.assertEqual(0, len(DoGet(_REMOTE, '/studies'))) | |
| 423 self.assertEqual(0, len(DoGet(_REMOTE, '/series'))) | |
| 424 self.assertEqual(0, len(DoGet(_REMOTE, '/instances'))) | |
| 425 self.assertEqual(None, r) | |
| 426 | |
| 427 DropOrthanc(_REMOTE) | |
| 428 self.assertEqual('0', DoGet(_REMOTE, '/statistics')['TotalDiskSize']) | |
| 429 self.assertEqual('0', DoGet(_REMOTE, '/statistics')['TotalUncompressedSize']) | |
| 7 | 430 |
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431 def test_delete_cascade(self): |
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432 # make sure deleting the last instance of a study deletes the series, study and patient |
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433 |
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434 self.assertEqual(0, len(DoGet(_REMOTE, '/instances'))) # make sure orthanc is empty when starting the test |
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435 a = UploadInstance(_REMOTE, 'DummyCT.dcm')['ID'] |
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436 self.assertEqual(1, len(DoGet(_REMOTE, '/instances'))) |
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437 self.assertEqual(1, len(DoGet(_REMOTE, '/series'))) |
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438 self.assertEqual(1, len(DoGet(_REMOTE, '/studies'))) |
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439 self.assertEqual(1, len(DoGet(_REMOTE, '/patients'))) |
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440 |
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441 DoDelete(_REMOTE, '/instances/%s' % a) |
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442 |
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443 self.assertEqual(0, len(DoGet(_REMOTE, '/instances'))) |
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444 self.assertEqual(0, len(DoGet(_REMOTE, '/series'))) |
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445 self.assertEqual(0, len(DoGet(_REMOTE, '/studies'))) |
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446 self.assertEqual(0, len(DoGet(_REMOTE, '/patients'))) |
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447 |
| 7 | 448 |
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449 def test_multiframe(self): |
| 7 | 450 i = UploadInstance(_REMOTE, 'Multiframe.dcm')['ID'] |
| 451 self.assertEqual(76, len(DoGet(_REMOTE, '/instances/%s/frames' % i))) | |
| 452 | |
| 453 im = GetImage(_REMOTE, '/instances/%s/frames/0/preview' % i) | |
| 454 self.assertEqual("L", im.mode) | |
| 455 self.assertEqual(512, im.size[0]) | |
| 456 self.assertEqual(512, im.size[1]) | |
| 457 | |
| 458 DoGet(_REMOTE, '/instances/%s/frames/0/image-uint8' % i) | |
| 459 DoGet(_REMOTE, '/instances/%s/frames/0/image-uint16' % i) | |
| 460 DoGet(_REMOTE, '/instances/%s/frames/75/preview' % i) | |
| 461 self.assertRaises(Exception, lambda: DoGet(_REMOTE, '/instances/%s/frames/aaa/preview' % i)) | |
| 462 self.assertRaises(Exception, lambda: DoGet(_REMOTE, '/instances/%s/frames/76/preview' % i)) | |
| 463 | |
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464 |
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465 def test_changes(self): |
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466 # Check emptiness |
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467 c = DoGet(_REMOTE, '/changes') |
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468 self.assertEqual(0, len(c['Changes'])) |
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469 #self.assertEqual(0, c['Last']) # Not true anymore for Orthanc >= 1.5.2 |
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470 self.assertTrue(c['Done']) |
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471 c = DoGet(_REMOTE, '/changes?last') |
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472 self.assertEqual(0, len(c['Changes'])) |
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473 #self.assertEqual(0, c['Last']) # Not true anymore for Orthanc >= 1.5.2 |
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474 self.assertTrue(c['Done']) |
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475 |
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476 # Add 1 instance |
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477 i = UploadInstance(_REMOTE, 'Brainix/Flair/IM-0001-0001.dcm')['ID'] |
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478 c = DoGet(_REMOTE, '/changes') |
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479 begin = c['Last'] |
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480 self.assertEqual(4, len(c['Changes'])) |
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481 self.assertTrue(c['Done']) |
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482 self.assertEqual(c['Changes'][-1]['Seq'], c['Last']) |
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483 |
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484 c = DoGet(_REMOTE, '/changes?last') |
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485 self.assertEqual(1, len(c['Changes'])) |
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486 self.assertEqual(begin, c['Last']) |
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487 self.assertTrue(c['Done']) |
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488 c = DoGet(_REMOTE, '/changes?limit=1&since=' + str(begin - 1)) |
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489 self.assertEqual(1, len(c['Changes'])) |
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490 self.assertEqual(begin, c['Last']) |
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491 self.assertTrue(c['Done']) |
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492 c = DoGet(_REMOTE, '/changes?limit=1&since=' + str(begin - 2)) |
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493 self.assertEqual(1, len(c['Changes'])) |
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494 self.assertEqual(begin - 1, c['Last']) |
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495 self.assertFalse(c['Done']) |
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496 c = DoGet(_REMOTE, '/changes?limit=1&since=' + str(begin - 3)) |
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497 self.assertEqual(1, len(c['Changes'])) |
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498 self.assertEqual(begin - 2, c['Last']) |
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499 self.assertFalse(c['Done']) |
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500 |
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501 UploadFolder(_REMOTE, 'Knee/T1') |
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502 UploadFolder(_REMOTE, 'Knee/T2') |
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503 since = begin |
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504 countPatients = 0 |
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505 countStudies = 0 |
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506 countSeries = 0 |
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507 countInstances = 0 |
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508 completed = 0 |
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509 while True: |
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510 c = DoGet(_REMOTE, '/changes', { 'since' : since, 'limit' : 3 }) |
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511 since = c['Last'] |
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512 for i in c['Changes']: |
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513 if i['ResourceType'] == 'Instance': |
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514 countInstances += 1 |
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515 if i['ResourceType'] == 'Patient': |
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516 countPatients += 1 |
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517 if i['ResourceType'] == 'Study': |
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518 countStudies += 1 |
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519 if i['ResourceType'] == 'Series': |
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520 countSeries += 1 |
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521 if i['ChangeType'] == 'NewInstance': |
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522 countInstances += 1 |
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523 if i['ChangeType'] == 'NewPatient': |
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524 countPatients += 1 |
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|
525 if i['ChangeType'] == 'NewStudy': |
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526 countStudies += 1 |
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527 if i['ChangeType'] == 'NewSeries': |
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|
528 countSeries += 1 |
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|
529 if i['ChangeType'] == 'CompletedSeries': |
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530 completed += 1 |
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|
531 self.assertTrue('ID' in i) |
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532 self.assertTrue('Path' in i) |
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533 self.assertTrue('Seq' in i) |
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534 if c['Done']: |
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|
535 break |
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|
536 |
|
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537 self.assertEqual(2 * 50, countInstances) |
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538 self.assertEqual(2 * 1, countPatients) |
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539 self.assertEqual(2 * 1, countStudies) |
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540 self.assertEqual(2 * 2, countSeries) |
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541 self.assertEqual(0, completed) |
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|
542 |
|
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|
543 |
|
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|
544 def test_archive(self): |
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545 UploadInstance(_REMOTE, 'Knee/T1/IM-0001-0001.dcm') |
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|
546 UploadInstance(_REMOTE, 'Knee/T2/IM-0001-0001.dcm') |
| 192 | 547 knee = 'ca29faea-b6a0e17f-067743a1-8b778011-a48b2a17' |
| 548 | |
| 549 z = GetArchive(_REMOTE, '/patients/%s/archive' % knee) | |
|
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550 self.assertEqual(2, len(z.namelist())) |
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|
551 |
|
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|
552 z = GetArchive(_REMOTE, '/studies/%s/archive' % DoGet(_REMOTE, '/studies')[0]) |
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|
553 self.assertEqual(2, len(z.namelist())) |
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|
554 |
|
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|
555 z = GetArchive(_REMOTE, '/series/%s/archive' % DoGet(_REMOTE, '/series')[0]) |
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|
556 self.assertEqual(1, len(z.namelist())) |
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|
557 |
|
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changeset
|
558 UploadInstance(_REMOTE, 'Brainix/Flair/IM-0001-0001.dcm') |
| 192 | 559 brainix = '16738bc3-e47ed42a-43ce044c-a3414a45-cb069bd0' |
| 560 | |
| 561 z = GetArchive(_REMOTE, '/patients/%s/archive' % knee) | |
|
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562 self.assertEqual(2, len(z.namelist())) |
| 192 | 563 |
| 564 z = PostArchive(_REMOTE, '/tools/create-archive', { | |
| 565 'Resources' : [ brainix, knee ] | |
| 566 }) | |
| 567 self.assertEqual(3, len(z.namelist())) | |
| 568 | |
|
8
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|
569 |
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570 def test_media_archive(self): |
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571 UploadInstance(_REMOTE, 'Knee/T1/IM-0001-0001.dcm') |
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572 UploadInstance(_REMOTE, 'Knee/T2/IM-0001-0001.dcm') |
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573 |
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574 z = GetArchive(_REMOTE, '/patients/%s/media' % DoGet(_REMOTE, '/patients')[0]) |
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575 self.assertEqual(3, len(z.namelist())) |
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576 self.assertTrue('IMAGES/IM0' in z.namelist()) |
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577 self.assertTrue('IMAGES/IM1' in z.namelist()) |
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578 self.assertTrue('DICOMDIR' in z.namelist()) |
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579 |
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580 try: |
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581 os.remove('/tmp/DICOMDIR') |
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582 except: |
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583 # The file does not exist |
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584 pass |
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585 |
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586 z.extract('DICOMDIR', '/tmp') |
| 45 | 587 a = subprocess.check_output([ FindExecutable('dciodvfy'), '/tmp/DICOMDIR' ], |
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588 stderr = subprocess.STDOUT).split('\n') |
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589 self.assertEqual(3, len(a)) |
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590 self.assertTrue(a[0].startswith('Warning')) |
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591 self.assertEqual('BasicDirectory', a[1]) |
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592 self.assertEqual('', a[2]) |
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593 |
| 45 | 594 a = subprocess.check_output([ FindExecutable('dcentvfy'), '/tmp/DICOMDIR' ], |
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595 stderr = subprocess.STDOUT).split('\n') |
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596 self.assertEqual(1, len(a)) |
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597 self.assertEqual('', a[0]) |
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598 |
| 45 | 599 a = subprocess.check_output([ FindExecutable('dcm2xml'), '/tmp/DICOMDIR' ]) |
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600 self.assertTrue(re.search('1.3.46.670589.11.17521.5.0.3124.2008081908590448738', a) != None) |
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601 self.assertTrue(re.search('1.3.46.670589.11.17521.5.0.3124.2008081909113806560', a) != None) |
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602 |
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603 os.remove('/tmp/DICOMDIR') |
| 10 | 604 |
| 605 | |
| 606 def test_protection(self): | |
| 607 UploadInstance(_REMOTE, 'Knee/T1/IM-0001-0001.dcm') | |
| 608 UploadInstance(_REMOTE, 'Brainix/Flair/IM-0001-0001.dcm') | |
| 609 self.assertEqual(2, len(DoGet(_REMOTE, '/patients'))) | |
| 610 a = DoGet(_REMOTE, '/patients')[0] | |
| 611 b = DoGet(_REMOTE, '/patients')[1] | |
| 612 self.assertEqual(0, DoGet(_REMOTE, '/patients/%s/protected' % a)) | |
| 613 DoPut(_REMOTE, '/patients/%s/protected' % a, '0', 'text/plain') | |
| 614 self.assertEqual(0, DoGet(_REMOTE, '/patients/%s/protected' % a)) | |
| 615 DoPut(_REMOTE, '/patients/%s/protected' % a, '1', 'text/plain') | |
| 616 self.assertEqual(1, DoGet(_REMOTE, '/patients/%s/protected' % a)) | |
| 617 DoPut(_REMOTE, '/patients/%s/protected' % a, '0', 'text/plain') | |
| 618 self.assertEqual(0, DoGet(_REMOTE, '/patients/%s/protected' % a)) | |
| 619 | |
| 620 | |
| 12 | 621 def test_raw_tags(self): |
| 10 | 622 i = UploadInstance(_REMOTE, 'PrivateTags.dcm')['ID'] |
| 623 | |
| 624 dicom = DoGet(_REMOTE, '/instances/%s/file' % i) | |
| 625 self.assertEqual('1a7c56cb02d6e742cc9c856a8ac182e3', ComputeMD5(dicom)) | |
| 626 | |
| 627 s = '/instances/%s/content/' % i | |
| 628 | |
| 629 self.assertEqual('LOGIQBOOK', DoGet(_REMOTE, s + '0008-1010').strip()) | |
| 630 self.assertRaises(Exception, lambda: DoGet(_REMOTE, s + '0008-1011')) | |
| 631 | |
| 632 self.assertEqual('Abdomen', DoGet(_REMOTE, s + '7fe1-1001/0/7fe1-1008/0/7fe1-1057').strip()) | |
| 633 self.assertEqual('cla_3c', DoGet(_REMOTE, s + '7fe1-1001/0/7fe1-1008/8/7fe1-1057').strip()) | |
| 634 | |
| 635 UploadInstance(_REMOTE, 'Brainix/Epi/IM-0001-0001.dcm') | |
| 636 UploadInstance(_REMOTE, 'Brainix/Flair/IM-0001-0001.dcm') | |
| 637 UploadInstance(_REMOTE, 'Knee/T1/IM-0001-0001.dcm') | |
| 638 UploadInstance(_REMOTE, 'Knee/T2/IM-0001-0001.dcm') | |
| 639 | |
| 640 for i in DoGet(_REMOTE, '/instances'): | |
| 641 aid = DoGet(_REMOTE, '/instances/%s' % i)['MainDicomTags']['SOPInstanceUID'] | |
| 642 self.assertEqual(aid, DoGet(_REMOTE, '/instances/%s/content/0008-0018' % i).replace(chr(0), '')) | |
| 643 | |
| 644 | |
| 645 def test_raw_tags_mdn(self): | |
| 646 # Bug reported by Cyril Paulus | |
| 647 i = UploadInstance(_REMOTE, 'PrivateMDNTags.dcm')['ID'] | |
| 648 self.assertAlmostEqual(0.000027, DoGet(_REMOTE, '/instances/%s/content/7053-1000' % i)) | |
| 649 | |
| 650 | |
| 651 def test_modify_instance(self): | |
| 652 i = UploadInstance(_REMOTE, 'PrivateTags.dcm')['ID'] | |
| 653 modified = DoPost(_REMOTE, '/instances/%s/modify' % i, | |
| 654 json.dumps({ | |
| 655 "Replace" : { | |
| 656 "PatientName" : "hello", | |
| 657 #"PatientID" : "world" | |
| 658 }, | |
| 659 "Remove" : [ "StationName" ], | |
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660 "RemovePrivateTags" : True |
| 10 | 661 }), |
| 662 'application/json') | |
| 663 j = DoPost(_REMOTE, '/instances', modified, 'application/dicom')['ID'] | |
| 664 | |
| 665 self.assertNotEqual('hello', DoGet(_REMOTE, '/instances/%s/content/0010-0010' % i).strip()) | |
| 666 #self.assertNotEqual('world', DoGet(_REMOTE, '/instances/%s/content/0010-0020' % i).strip()) | |
| 83 | 667 self.assertEqual('LOGIQBOOK', DoGet(_REMOTE, '/instances/%s/content/0008-1010' % i).strip()) |
| 10 | 668 DoGet(_REMOTE, '/instances/%s/content/6003-1010' % i) # Some private tag |
| 669 | |
| 670 self.assertEqual('hello', DoGet(_REMOTE, '/instances/%s/content/0010-0010' % j).strip()) | |
| 671 #self.assertEqual('world', DoGet(_REMOTE, '/instances/%s/content/0010-0020' % j).strip()) | |
| 672 self.assertRaises(Exception, lambda: DoGet(_REMOTE, '/instances/%s/content/0008-1010' % j)) | |
| 673 self.assertRaises(Exception, lambda: DoGet(_REMOTE, '/instances/%s/content/6003-1010' % j)) | |
| 674 | |
| 675 | |
| 676 def test_modify_series(self): | |
| 677 # Upload 4 images from the same series | |
| 678 for i in range(4): | |
| 679 UploadInstance(_REMOTE, 'Brainix/Epi/IM-0001-000%d.dcm' % (i + 1)) | |
| 680 | |
| 681 origSeries = DoGet(_REMOTE, '/series')[0] | |
| 682 newSeries = DoPost(_REMOTE, '/series/%s/modify' % origSeries, | |
| 683 '{"Replace":{"PatientName":"Jodogne"}}', | |
| 684 'application/json')['ID'] | |
| 685 | |
| 686 self.assertEqual(origSeries, DoGet(_REMOTE, '/series/%s' % newSeries)['ModifiedFrom']) | |
| 687 instances = DoGet(_REMOTE, '/series/%s' % newSeries)['Instances'] | |
| 688 self.assertEqual(4, len(instances)) | |
| 689 for i in instances: | |
| 690 j = DoGet(_REMOTE, '/instances/%s' % i)['ModifiedFrom'] | |
| 691 self.assertEqual(newSeries, DoGet(_REMOTE, '/instances/%s' % i)['ParentSeries']) | |
| 692 self.assertEqual(origSeries, DoGet(_REMOTE, '/instances/%s' % j)['ParentSeries']) | |
| 693 | |
| 694 self.assertEqual('Jodogne', DoGet(_REMOTE, '/instances/%s/content/0010-0010' % i).strip()) | |
| 695 self.assertNotEqual('Jodogne', DoGet(_REMOTE, '/instances/%s/content/0010-0010' % j).strip()) | |
| 696 | |
| 697 | |
| 698 def test_modify_study(self): | |
| 699 # Upload 4 images from the 2 series of the same study | |
| 700 for i in range(4): | |
| 701 UploadInstance(_REMOTE, 'Brainix/Flair/IM-0001-000%d.dcm' % (i + 1)) | |
| 702 UploadInstance(_REMOTE, 'Brainix/Epi/IM-0001-000%d.dcm' % (i + 1)) | |
| 703 | |
| 704 origStudy = DoGet(_REMOTE, '/studies')[0] | |
| 705 newStudy = DoPost(_REMOTE, '/studies/%s/modify' % origStudy, | |
| 706 '{"Replace":{"PatientName":"Jodogne"}}', | |
| 707 'application/json')['ID'] | |
| 708 | |
| 709 self.assertEqual(origStudy, DoGet(_REMOTE, '/studies/%s' % newStudy)['ModifiedFrom']) | |
| 710 series = DoGet(_REMOTE, '/studies/%s' % newStudy)['Series'] | |
| 711 self.assertEqual(2, len(series)) | |
| 712 for s in series: | |
| 713 ss = DoGet(_REMOTE, '/series/%s' % s)['ModifiedFrom'] | |
| 714 self.assertEqual(newStudy, DoGet(_REMOTE, '/series/%s' % s)['ParentStudy']) | |
| 715 self.assertEqual(origStudy, DoGet(_REMOTE, '/series/%s' % ss)['ParentStudy']) | |
| 716 | |
| 717 instances = DoGet(_REMOTE, '/series/%s' % s)['Instances'] | |
| 718 for i in instances: | |
| 719 j = DoGet(_REMOTE, '/instances/%s' % i)['ModifiedFrom'] | |
| 720 self.assertEqual(s, DoGet(_REMOTE, '/instances/%s' % i)['ParentSeries']) | |
| 721 self.assertEqual(ss, DoGet(_REMOTE, '/instances/%s' % j)['ParentSeries']) | |
| 722 | |
| 723 self.assertEqual('Jodogne', DoGet(_REMOTE, '/instances/%s/content/0010-0010' % i).strip()) | |
| 724 self.assertNotEqual('Jodogne', DoGet(_REMOTE, '/instances/%s/content/0010-0010' % j).strip()) | |
| 725 | |
| 726 | |
| 727 def test_anonymize_series(self): | |
| 728 # Upload 4 images from the same series | |
| 729 for i in range(4): | |
| 730 UploadInstance(_REMOTE, 'Brainix/Epi/IM-0001-000%d.dcm' % (i + 1)) | |
| 731 | |
| 732 origSeries = DoGet(_REMOTE, '/series')[0] | |
| 733 newSeries = DoPost(_REMOTE, '/series/%s/anonymize' % origSeries, | |
| 734 '{}', | |
| 735 'application/json')['ID'] | |
| 736 | |
| 737 self.assertEqual(origSeries, DoGet(_REMOTE, '/series/%s' % newSeries)['AnonymizedFrom']) | |
| 738 instances = DoGet(_REMOTE, '/series/%s' % newSeries)['Instances'] | |
| 739 self.assertEqual(4, len(instances)) | |
| 740 for i in instances: | |
| 741 j = DoGet(_REMOTE, '/instances/%s' % i)['AnonymizedFrom'] | |
| 742 self.assertEqual(newSeries, DoGet(_REMOTE, '/instances/%s' % i)['ParentSeries']) | |
| 743 self.assertEqual(origSeries, DoGet(_REMOTE, '/instances/%s' % j)['ParentSeries']) | |
| 744 | |
| 745 DoGet(_REMOTE, '/instances/%s/content/0008-1010' % j) | |
| 746 self.assertRaises(Exception, lambda: DoGet(_REMOTE, '/instances/%s/content/0008-1010' % i)) | |
| 747 | |
| 748 | |
| 749 def test_anonymize_study(self): | |
| 750 # Upload 4 images from the 2 series of the same study | |
| 751 for i in range(4): | |
| 752 UploadInstance(_REMOTE, 'Brainix/Flair/IM-0001-000%d.dcm' % (i + 1)) | |
| 753 UploadInstance(_REMOTE, 'Brainix/Epi/IM-0001-000%d.dcm' % (i + 1)) | |
| 754 | |
| 755 origStudy = DoGet(_REMOTE, '/studies')[0] | |
| 756 newStudy = DoPost(_REMOTE,'/studies/%s/anonymize' % origStudy, | |
| 757 '{"Replace":{"PatientName":"Jodogne"}}', | |
| 758 'application/json')['ID'] | |
| 759 | |
| 760 self.assertEqual(origStudy, DoGet(_REMOTE, '/studies/%s' % newStudy)['AnonymizedFrom']) | |
| 761 series = DoGet(_REMOTE, '/studies/%s' % newStudy)['Series'] | |
| 762 self.assertEqual(2, len(series)) | |
| 763 for s in series: | |
| 764 ss = DoGet(_REMOTE, '/series/%s' % s)['AnonymizedFrom'] | |
| 765 self.assertEqual(newStudy, DoGet(_REMOTE, '/series/%s' % s)['ParentStudy']) | |
| 766 self.assertEqual(origStudy, DoGet(_REMOTE, '/series/%s' % ss)['ParentStudy']) | |
| 767 | |
| 768 instances = DoGet(_REMOTE, '/series/%s' % s)['Instances'] | |
| 769 for i in instances: | |
| 770 j = DoGet(_REMOTE, '/instances/%s' % i)['AnonymizedFrom'] | |
| 771 self.assertEqual(s, DoGet(_REMOTE, '/instances/%s' % i)['ParentSeries']) | |
| 772 self.assertEqual(ss, DoGet(_REMOTE, '/instances/%s' % j)['ParentSeries']) | |
| 773 | |
| 774 self.assertEqual('Jodogne', DoGet(_REMOTE, '/instances/%s/content/0010-0010' % i).strip()) | |
| 775 self.assertNotEqual('Jodogne', DoGet(_REMOTE, '/instances/%s/content/0010-0010' % j).strip()) | |
| 11 | 776 |
| 777 | |
| 778 | |
| 779 def test_storescu(self): | |
| 780 # Check emptiness | |
| 781 e = DoGet(_REMOTE, '/exports') | |
| 782 self.assertEqual(0, len(e['Exports'])) | |
| 783 self.assertEqual(0, e['Last']) | |
| 784 self.assertTrue(e['Done']) | |
| 785 e = DoGet(_REMOTE, '/exports?last') | |
| 786 self.assertEqual(0, len(e['Exports'])) | |
| 787 self.assertEqual(0, e['Last']) | |
| 788 self.assertTrue(e['Done']) | |
| 789 | |
| 790 # Add 1 instance | |
| 791 i = UploadInstance(_REMOTE, 'DummyCT.dcm')['ID'] | |
| 792 self.assertEqual(0, len(DoGet(_LOCAL, '/patients'))) | |
| 793 | |
| 794 # Export the instance | |
| 795 j = DoPost(_REMOTE, '/modalities/orthanctest/store', str(i), 'text/plain') # instance | |
| 796 self.assertEqual(1, len(DoGet(_LOCAL, '/patients'))) | |
| 797 self.assertEqual(1, len(DoGet(_LOCAL, '/studies'))) | |
| 798 self.assertEqual(1, len(DoGet(_LOCAL, '/series'))) | |
| 799 self.assertEqual(1, len(DoGet(_LOCAL, '/instances'))) | |
| 800 | |
| 801 e = DoGet(_REMOTE, '/exports') | |
| 802 self.assertEqual(1, len(e['Exports'])) | |
| 803 self.assertTrue(e['Done']) | |
| 804 self.assertEqual(e['Exports'][-1]['Seq'], e['Last']) | |
| 805 e = DoGet(_REMOTE, '/exports?limit=1') | |
| 806 self.assertEqual(1, len(e['Exports'])) | |
| 807 self.assertTrue(e['Done']) | |
| 808 self.assertEqual(e['Exports'][-1]['Seq'], e['Last']) | |
| 809 e = DoGet(_REMOTE, '/exports?last') | |
| 810 self.assertEqual(1, len(e['Exports'])) | |
| 811 self.assertTrue(e['Done']) | |
| 812 self.assertEqual(e['Exports'][-1]['Seq'], e['Last']) | |
| 813 seqInstance = e['Last'] | |
| 814 | |
| 815 # Export the series | |
| 816 j = DoPost(_REMOTE, '/modalities/orthanctest/store', 'f2635388-f01d497a-15f7c06b-ad7dba06-c4c599fe', 'text/plain') | |
| 817 | |
| 818 e = DoGet(_REMOTE, '/exports') | |
| 819 self.assertEqual(2, len(e['Exports'])) | |
| 820 self.assertTrue(e['Done']) | |
| 821 self.assertEqual(e['Exports'][-1]['Seq'], e['Last']) | |
| 822 seqSeries = e['Last'] | |
| 823 self.assertNotEqual(seqInstance, seqSeries) | |
| 824 e = DoGet(_REMOTE, '/exports?limit=1&since=0') | |
| 825 self.assertEqual(1, len(e['Exports'])) | |
| 826 self.assertFalse(e['Done']) | |
| 827 self.assertEqual(e['Exports'][-1]['Seq'], seqInstance) | |
| 828 e = DoGet(_REMOTE, '/exports?limit=1&since=' + str(seqInstance)) | |
| 829 self.assertEqual(1, len(e['Exports'])) | |
| 830 self.assertTrue(e['Done']) | |
| 831 self.assertEqual(e['Exports'][-1]['Seq'], seqSeries) | |
| 832 e = DoGet(_REMOTE, '/exports?last') | |
| 833 self.assertEqual(1, len(e['Exports'])) | |
| 834 self.assertTrue(e['Done']) | |
| 835 self.assertEqual(e['Exports'][-1]['Seq'], seqSeries) | |
| 836 | |
| 837 # Export the study | |
| 838 j = DoPost(_REMOTE, '/modalities/orthanctest/store', 'b9c08539-26f93bde-c81ab0d7-bffaf2cb-a4d0bdd0', 'text/plain') | |
| 839 seqStudy = DoGet(_REMOTE, '/exports')['Last'] | |
| 840 | |
| 841 # Export the patient | |
| 842 j = DoPost(_REMOTE, '/modalities/orthanctest/store', '6816cb19-844d5aee-85245eba-28e841e6-2414fae2', 'text/plain') | |
| 843 self.assertEqual(1, len(DoGet(_LOCAL, '/patients'))) | |
| 844 self.assertEqual(1, len(DoGet(_LOCAL, '/studies'))) | |
| 845 self.assertEqual(1, len(DoGet(_LOCAL, '/series'))) | |
| 846 self.assertEqual(1, len(DoGet(_LOCAL, '/instances'))) | |
| 847 | |
| 848 e = DoGet(_REMOTE, '/exports') | |
| 849 self.assertEqual(4, len(e['Exports'])) | |
| 850 self.assertTrue(e['Done']) | |
| 851 self.assertEqual(e['Exports'][-1]['Seq'], e['Last']) | |
| 852 seqPatient = e['Last'] | |
| 853 self.assertNotEqual(seqInstance, seqSeries) | |
| 854 self.assertNotEqual(seqSeries, seqStudy) | |
| 855 self.assertNotEqual(seqStudy, seqPatient) | |
| 856 self.assertTrue(seqInstance < seqSeries) | |
| 857 self.assertTrue(seqSeries < seqStudy) | |
| 858 self.assertTrue(seqStudy < seqPatient) | |
| 859 e = DoGet(_REMOTE, '/exports?limit=1&since=0') | |
| 860 self.assertEqual(1, len(e['Exports'])) | |
| 861 self.assertFalse(e['Done']) | |
| 862 self.assertEqual(e['Exports'][-1]['Seq'], seqInstance) | |
| 863 e = DoGet(_REMOTE, '/exports?limit=1&since=' + str(seqInstance)) | |
| 864 self.assertEqual(1, len(e['Exports'])) | |
| 865 self.assertFalse(e['Done']) | |
| 866 self.assertEqual(e['Exports'][-1]['Seq'], seqSeries) | |
| 867 e = DoGet(_REMOTE, '/exports?limit=1&since=' + str(seqSeries)) | |
| 868 self.assertEqual(1, len(e['Exports'])) | |
| 869 self.assertFalse(e['Done']) | |
| 870 self.assertEqual(e['Exports'][-1]['Seq'], seqStudy) | |
| 871 e = DoGet(_REMOTE, '/exports?limit=1&since=' + str(seqStudy)) | |
| 872 self.assertEqual(1, len(e['Exports'])) | |
| 873 self.assertTrue(e['Done']) | |
| 874 self.assertEqual(e['Exports'][-1]['Seq'], seqPatient) | |
| 875 e = DoGet(_REMOTE, '/exports?last') | |
| 876 self.assertEqual(1, len(e['Exports'])) | |
| 877 self.assertTrue(e['Done']) | |
| 878 self.assertEqual(e['Exports'][-1]['Seq'], seqPatient) | |
| 879 | |
| 880 | |
| 881 # Check the content of the logged information | |
| 882 e = DoGet(_REMOTE, '/exports')['Exports'] | |
| 883 | |
| 884 if 'PatientID' in e[0]: | |
| 885 # Since Orthanc 0.8.6 | |
| 886 patient = 'PatientID' | |
| 887 study = 'StudyInstanceUID' | |
| 888 series = 'SeriesInstanceUID' | |
| 889 instance = 'SOPInstanceUID' | |
| 890 else: | |
| 891 # Up to Orthanc 0.8.5 | |
| 892 patient = 'PatientId' | |
| 893 study = 'StudyInstanceUid' | |
| 894 series = 'SeriesInstanceUid' | |
| 895 instance = 'SopInstanceUid' | |
| 896 | |
| 897 for k in range(4): | |
| 898 self.assertTrue('Date' in e[k]) | |
| 899 self.assertTrue('Seq' in e[k]) | |
| 900 self.assertEqual('orthanctest', e[k]['RemoteModality']) | |
| 901 | |
| 902 self.assertEqual(10, len(e[0])) | |
| 903 self.assertEqual('Instance', e[0]['ResourceType']) | |
| 904 self.assertEqual('66a662ce-7430e543-bad44d47-0dc5a943-ec7a538d', e[0]['ID']) | |
| 905 self.assertEqual('/instances/66a662ce-7430e543-bad44d47-0dc5a943-ec7a538d', e[0]['Path']) | |
| 906 self.assertEqual('1.2.840.113619.2.176.2025.1499492.7040.1171286242.109', e[0][instance]) | |
| 907 self.assertEqual('1.2.840.113619.2.176.2025.1499492.7391.1171285944.394', e[0][series]) | |
| 908 self.assertEqual('1.2.840.113619.2.176.2025.1499492.7391.1171285944.390', e[0][study]) | |
| 909 self.assertEqual('ozp00SjY2xG', e[0][patient]) | |
| 910 | |
| 911 self.assertEqual(9, len(e[1])) | |
| 912 self.assertEqual('Series', e[1]['ResourceType']) | |
| 913 self.assertEqual('f2635388-f01d497a-15f7c06b-ad7dba06-c4c599fe', e[1]['ID']) | |
| 914 self.assertEqual('/series/f2635388-f01d497a-15f7c06b-ad7dba06-c4c599fe', e[1]['Path']) | |
| 915 self.assertEqual('1.2.840.113619.2.176.2025.1499492.7391.1171285944.394', e[1][series]) | |
| 916 self.assertEqual('1.2.840.113619.2.176.2025.1499492.7391.1171285944.390', e[1][study]) | |
| 917 self.assertEqual('ozp00SjY2xG', e[1][patient]) | |
| 918 | |
| 919 self.assertEqual(8, len(e[2])) | |
| 920 self.assertEqual('Study', e[2]['ResourceType']) | |
| 921 self.assertEqual('b9c08539-26f93bde-c81ab0d7-bffaf2cb-a4d0bdd0', e[2]['ID']) | |
| 922 self.assertEqual('/studies/b9c08539-26f93bde-c81ab0d7-bffaf2cb-a4d0bdd0', e[2]['Path']) | |
| 923 self.assertEqual('1.2.840.113619.2.176.2025.1499492.7391.1171285944.390', e[2][study]) | |
| 924 self.assertEqual('ozp00SjY2xG', e[2][patient]) | |
| 925 | |
| 926 self.assertEqual(7, len(e[3])) | |
| 927 self.assertEqual('Patient', e[3]['ResourceType']) | |
| 928 self.assertEqual('6816cb19-844d5aee-85245eba-28e841e6-2414fae2', e[3]['ID']) | |
| 929 self.assertEqual('/patients/6816cb19-844d5aee-85245eba-28e841e6-2414fae2', e[3]['Path']) | |
| 930 self.assertEqual('ozp00SjY2xG', e[3][patient]) | |
| 931 | |
| 932 DropOrthanc(_REMOTE) | |
| 933 self.assertEqual(0, len(DoGet(_REMOTE, '/exports')['Exports'])) | |
| 934 | |
| 935 | |
| 936 def test_store_peer(self): | |
| 937 self.assertEqual(0, len(DoGet(_LOCAL, '/exports')['Exports'])) | |
| 938 self.assertEqual(0, len(DoGet(_REMOTE, '/exports')['Exports'])) | |
| 939 | |
| 940 i = UploadInstance(_REMOTE, 'DummyCT.dcm')['ID'] | |
| 941 self.assertEqual(0, len(DoGet(_LOCAL, '/patients'))) | |
| 942 self.assertEqual(1, len(DoGet(_REMOTE, '/patients'))) | |
| 943 | |
| 944 j = DoPost(_REMOTE, '/peers/peer/store', str(i), 'text/plain') | |
| 945 self.assertEqual(1, len(DoGet(_LOCAL, '/patients'))) | |
| 946 self.assertEqual(1, len(DoGet(_REMOTE, '/patients'))) | |
| 947 | |
| 948 self.assertEqual(1, len(DoGet(_REMOTE, '/exports')['Exports'])) | |
| 949 | |
| 950 DropOrthanc(_REMOTE) | |
| 951 self.assertEqual(0, len(DoGet(_REMOTE, '/exports')['Exports'])) | |
| 952 | |
| 953 | |
| 954 def test_bulk_storescu(self): | |
| 955 self.assertEqual(0, len(DoGet(_LOCAL, '/patients'))) | |
| 956 | |
| 957 a = UploadInstance(_REMOTE, 'Knee/T1/IM-0001-0001.dcm') | |
| 958 b = UploadInstance(_REMOTE, 'Knee/T2/IM-0001-0001.dcm') | |
| 959 | |
| 960 j = DoPost(_REMOTE, '/modalities/orthanctest/store', [ a['ID'], b['ID'] ], 'application/json') | |
| 961 self.assertEqual(2, len(DoGet(_LOCAL, '/instances'))) | |
| 962 | |
| 963 DropOrthanc(_LOCAL) | |
| 964 | |
| 965 # Send using patient's UUID | |
| 966 self.assertEqual(0, len(DoGet(_LOCAL, '/instances'))) | |
| 967 j = DoPost(_REMOTE, '/modalities/orthanctest/store', | |
| 968 [ 'ca29faea-b6a0e17f-067743a1-8b778011-a48b2a17' ], 'application/json') | |
| 969 self.assertEqual(2, len(DoGet(_LOCAL, '/instances'))) | |
| 970 | |
| 971 | |
| 972 def test_color(self): | |
| 973 i = UploadInstance(_REMOTE, 'ColorTestMalaterre.dcm')['ID'] | |
| 974 im = GetImage(_REMOTE, '/instances/%s/preview' % i) | |
| 975 self.assertEqual("RGB", im.mode) | |
| 976 self.assertEqual(41, im.size[0]) | |
| 977 self.assertEqual(41, im.size[1]) | |
| 978 | |
| 979 # http://effbot.org/zone/pil-comparing-images.htm | |
| 13 | 980 truth = Image.open(GetDatabasePath('ColorTestMalaterre.png')) |
| 11 | 981 self.assertTrue(ImageChops.difference(im, truth).getbbox() is None) |
| 982 | |
| 983 | |
| 12 | 984 def test_faking_ruby_put(self): |
| 985 UploadInstance(_REMOTE, 'Knee/T1/IM-0001-0001.dcm') | |
| 986 UploadInstance(_REMOTE, 'Brainix/Flair/IM-0001-0001.dcm') | |
| 987 self.assertEqual(2, len(DoGet(_REMOTE, '/patients'))) | |
| 988 a = DoGet(_REMOTE, '/patients')[0] | |
| 989 b = DoGet(_REMOTE, '/patients')[1] | |
| 990 self.assertEqual(0, DoGet(_REMOTE, '/patients/%s/protected' % a)) | |
| 991 DoGet(_REMOTE, '/patients/%s/protected' % a, data = { '_method' : 'PUT' }, body = '0') | |
| 992 self.assertEqual(0, DoGet(_REMOTE, '/patients/%s/protected' % a)) | |
| 993 DoGet(_REMOTE, '/patients/%s/protected' % a, data = { '_method' : 'PUT' }, body = '1') | |
| 994 self.assertEqual(1, DoGet(_REMOTE, '/patients/%s/protected' % a)) | |
| 995 DoGet(_REMOTE, '/patients/%s/protected' % a, data = { '_method' : 'PUT' }, body = '0') | |
| 996 self.assertEqual(0, DoGet(_REMOTE, '/patients/%s/protected' % a)) | |
| 997 | |
| 998 | |
| 999 def test_faking_ruby_delete(self): | |
| 1000 UploadInstance(_REMOTE, 'Knee/T1/IM-0001-0001.dcm') | |
| 1001 UploadInstance(_REMOTE, 'Brainix/Flair/IM-0001-0001.dcm') | |
| 1002 self.assertEqual(2, len(DoGet(_REMOTE, '/patients'))) | |
| 1003 a = DoGet(_REMOTE, '/patients')[0] | |
| 1004 b = DoGet(_REMOTE, '/patients')[1] | |
| 1005 DoGet(_REMOTE, '/patients/%s' % a, data = { '_method' : 'DELETE' }) | |
| 1006 self.assertEqual(1, len(DoGet(_REMOTE, '/patients'))) | |
| 1007 DoGet(_REMOTE, '/patients/%s' % b, data = { '_method' : 'DELETE' }) | |
| 1008 self.assertEqual(0, len(DoGet(_REMOTE, '/patients'))) | |
| 1009 | |
| 1010 | |
| 1011 def test_faking_google_put(self): | |
| 1012 UploadInstance(_REMOTE, 'Knee/T1/IM-0001-0001.dcm') | |
| 1013 UploadInstance(_REMOTE, 'Brainix/Flair/IM-0001-0001.dcm') | |
| 1014 self.assertEqual(2, len(DoGet(_REMOTE, '/patients'))) | |
| 1015 a = DoGet(_REMOTE, '/patients')[0] | |
| 1016 b = DoGet(_REMOTE, '/patients')[1] | |
| 1017 self.assertEqual(0, DoGet(_REMOTE, '/patients/%s/protected' % a)) | |
| 1018 DoPost(_REMOTE, '/patients/%s/protected' % a, headers = { 'X-HTTP-Method-Override' : 'PUT' }, data = '0') | |
| 1019 self.assertEqual(0, DoGet(_REMOTE, '/patients/%s/protected' % a)) | |
| 1020 DoPost(_REMOTE, '/patients/%s/protected' % a, headers = { 'X-HTTP-Method-Override' : 'PUT' }, data = '1') | |
| 1021 self.assertEqual(1, DoGet(_REMOTE, '/patients/%s/protected' % a)) | |
| 1022 DoPost(_REMOTE, '/patients/%s/protected' % a, headers = { 'X-HTTP-Method-Override' : 'PUT' }, data = '0') | |
| 1023 self.assertEqual(0, DoGet(_REMOTE, '/patients/%s/protected' % a)) | |
| 1024 | |
| 1025 | |
| 1026 def test_faking_google_delete(self): | |
| 1027 UploadInstance(_REMOTE, 'Knee/T1/IM-0001-0001.dcm') | |
| 1028 UploadInstance(_REMOTE, 'Brainix/Flair/IM-0001-0001.dcm') | |
| 1029 self.assertEqual(2, len(DoGet(_REMOTE, '/patients'))) | |
| 1030 a = DoGet(_REMOTE, '/patients')[0] | |
| 1031 b = DoGet(_REMOTE, '/patients')[1] | |
| 1032 DoPost(_REMOTE, '/patients/%s' % a, headers = { 'X-HTTP-Method-Override' : 'DELETE' }) | |
| 1033 self.assertEqual(1, len(DoGet(_REMOTE, '/patients'))) | |
| 1034 DoPost(_REMOTE, '/patients/%s' % b, headers = { 'X-HTTP-Method-Override' : 'DELETE' }) | |
| 1035 self.assertEqual(0, len(DoGet(_REMOTE, '/patients'))) | |
| 1036 | |
| 1037 | |
| 1038 def test_lua(self): | |
| 1039 self.assertEqual(42, DoPost(_REMOTE, '/tools/execute-script', 'print(42)')) | |
| 1040 self.assertTrue(IsDefinedInLua(_REMOTE, 'PrintRecursive')) | |
| 1041 self.assertFalse(IsDefinedInLua(_REMOTE, 'HelloWorld')) | |
| 1042 | |
| 1043 | |
| 1044 def test_metadata(self): | |
| 1045 UploadInstance(_REMOTE, 'Knee/T1/IM-0001-0001.dcm') | |
| 1046 p = DoGet(_REMOTE, '/patients')[0] | |
| 1047 i = DoGet(_REMOTE, '/instances')[0] | |
|
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1048 series = DoGet(_REMOTE, '/series')[0] |
| 12 | 1049 |
| 1050 m = DoGet(_REMOTE, '/patients/%s/metadata' % p) | |
| 1051 self.assertEqual(1, len(m)) | |
| 1052 self.assertEqual('LastUpdate', m[0]) | |
| 1053 | |
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1054 # The lines below failed on Orthanc <= 1.8.2 |
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1055 self.assertRaises(Exception, lambda: DoGet(_REMOTE, '/studies/%s/metadata' % p)) |
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1056 self.assertRaises(Exception, lambda: DoGet(_REMOTE, '/series/%s/metadata' % p)) |
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1057 self.assertRaises(Exception, lambda: DoGet(_REMOTE, '/instances/%s/metadata' % p)) |
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1058 |
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1059 m = DoGet(_REMOTE, '/studies/%s/metadata' % DoGet(_REMOTE, '/studies')[0]) |
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1060 self.assertEqual(1, len(m)) |
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1061 self.assertEqual('LastUpdate', m[0]) |
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1062 |
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1063 m = DoGet(_REMOTE, '/series/%s/metadata' % series) |
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1064 self.assertEqual(2, len(m)) |
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1065 self.assertTrue('LastUpdate' in m) |
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1066 |
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1067 # New in Orthanc 1.9.0 |
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1068 self.assertTrue('RemoteAET' in m) |
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1069 self.assertEqual(DoGet(_REMOTE, '/series/%s/metadata/RemoteAET' % series), '') # None, received by REST API |
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1070 |
| 12 | 1071 m = DoGet(_REMOTE, '/instances/%s/metadata' % i) |
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1072 if IsOrthancVersionAbove(_REMOTE, 1, 9, 1): |
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1073 self.assertEqual(9, len(m)) |
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1074 self.assertTrue('PixelDataOffset' in m) # New in Orthanc 1.9.1 |
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1075 self.assertEqual(int(DoGet(_REMOTE, '/instances/%s/metadata/PixelDataOffset' % i)), 0x0c78) |
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1076 else: |
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1077 self.assertEqual(8, len(m)) |
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1078 |
| 12 | 1079 self.assertTrue('IndexInSeries' in m) |
| 1080 self.assertTrue('ReceptionDate' in m) | |
| 1081 self.assertTrue('RemoteAET' in m) | |
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1082 self.assertTrue('Origin' in m) |
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1083 self.assertTrue('TransferSyntax' in m) |
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1084 self.assertTrue('SopClassUid' in m) |
| 145 | 1085 self.assertTrue('RemoteIP' in m) |
| 1086 self.assertTrue('HttpUsername' in m) | |
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1087 self.assertEqual(DoGet(_REMOTE, '/instances/%s/metadata/IndexInSeries' % i), 1) |
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1088 self.assertEqual(DoGet(_REMOTE, '/instances/%s/metadata/Origin' % i), 'RestApi') |
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1089 self.assertEqual(DoGet(_REMOTE, '/instances/%s/metadata/RemoteAET' % i), '') # None, received by REST API |
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1090 self.assertEqual(DoGet(_REMOTE, '/instances/%s/metadata/TransferSyntax' % i), '1.2.840.10008.1.2.4.91') # JPEG2k |
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1091 self.assertEqual(DoGet(_REMOTE, '/instances/%s/metadata/SopClassUid' % i), '1.2.840.10008.5.1.4.1.1.4') |
| 12 | 1092 |
| 1093 # Play with custom metadata | |
| 1094 DoPut(_REMOTE, '/patients/%s/metadata/5555' % p, 'coucou') | |
| 1095 m = DoGet(_REMOTE, '/patients/%s/metadata' % p) | |
| 1096 self.assertEqual(2, len(m)) | |
| 1097 self.assertTrue('LastUpdate' in m) | |
| 1098 self.assertTrue('5555' in m) | |
| 1099 self.assertEqual('coucou', DoGet(_REMOTE, '/patients/%s/metadata/5555' % p)) | |
| 1100 DoPut(_REMOTE, '/patients/%s/metadata/5555' % p, 'hello') | |
| 1101 self.assertEqual('hello', DoGet(_REMOTE, '/patients/%s/metadata/5555' % p)) | |
| 1102 DoDelete(_REMOTE, '/patients/%s/metadata/5555' % p) | |
| 1103 m = DoGet(_REMOTE, '/patients/%s/metadata' % p) | |
| 1104 self.assertEqual(1, len(m)) | |
| 1105 self.assertTrue('LastUpdate' in m) | |
| 13 | 1106 |
| 1107 | |
| 1108 def test_statistics(self): | |
| 1109 # Upload 16 instances | |
| 1110 for i in range(4): | |
| 1111 UploadInstance(_REMOTE, 'Brainix/Flair/IM-0001-000%d.dcm' % (i + 1)) | |
| 1112 UploadInstance(_REMOTE, 'Brainix/Epi/IM-0001-000%d.dcm' % (i + 1)) | |
| 1113 UploadInstance(_REMOTE, 'Knee/T1/IM-0001-000%d.dcm' % (i + 1)) | |
| 1114 UploadInstance(_REMOTE, 'Knee/T2/IM-0001-000%d.dcm' % (i + 1)) | |
| 1115 | |
| 1116 s = DoGet(_REMOTE, '/statistics') | |
| 1117 self.assertEqual(16, s['CountInstances']) | |
| 1118 self.assertEqual(2, s['CountPatients']) | |
| 1119 self.assertEqual(2, s['CountStudies']) | |
| 1120 self.assertEqual(4, s['CountSeries']) | |
| 1121 d = int(s['TotalUncompressedSize']) | |
| 1122 | |
| 1123 e = 0 | |
| 1124 for patient in DoGet(_REMOTE, '/patients'): | |
| 1125 s = DoGet(_REMOTE, '/patients/%s/statistics' % patient) | |
| 1126 self.assertEqual(8, s['CountInstances']) | |
| 1127 self.assertEqual(1, s['CountStudies']) | |
| 1128 self.assertEqual(2, s['CountSeries']) | |
| 1129 e += int(s['UncompressedSize']) | |
| 1130 | |
| 1131 for study in DoGet(_REMOTE, '/studies'): | |
| 1132 s = DoGet(_REMOTE, '/studies/%s/statistics' % study) | |
| 1133 self.assertEqual(8, s['CountInstances']) | |
| 1134 self.assertEqual(2, s['CountSeries']) | |
| 1135 e += int(s['UncompressedSize']) | |
| 1136 | |
| 1137 for series in DoGet(_REMOTE, '/series'): | |
| 1138 s = DoGet(_REMOTE, '/series/%s/statistics' % series) | |
| 1139 self.assertEqual(4, s['CountInstances']) | |
| 1140 e += int(s['UncompressedSize']) | |
| 1141 | |
| 1142 self.assertEqual(3 * d, e) | |
| 1143 | |
| 1144 | |
| 1145 def test_custom_attachment(self): | |
| 1146 UploadInstance(_REMOTE, 'Brainix/Flair/IM-0001-0001.dcm') | |
| 1147 patient = DoGet(_REMOTE, '/patients')[0] | |
| 1148 instance = DoGet(_REMOTE, '/instances')[0] | |
| 1149 size = int(DoGet(_REMOTE, '/patients/%s/statistics' % patient)['DiskSize']) | |
| 1150 self.assertEqual(size, int(DoGet(_REMOTE, '/statistics')['TotalDiskSize'])) | |
| 1151 | |
| 1152 self.assertEqual(0, len(DoGet(_REMOTE, '/patients/%s/attachments' % patient))) | |
| 1153 self.assertEqual(2, len(DoGet(_REMOTE, '/instances/%s/attachments' % instance))) | |
| 1154 self.assertTrue('dicom' in DoGet(_REMOTE, '/instances/%s/attachments' % instance)) | |
| 1155 self.assertTrue('dicom-as-json' in DoGet(_REMOTE, '/instances/%s/attachments' % instance)) | |
| 1156 | |
| 1157 self.assertRaises(Exception, lambda: DoPut(_REMOTE, '/patients/%s/attachments/22' % patient, 'hello')) | |
| 1158 hello = 'hellohellohellohellohellohellohellohellohello' | |
| 1159 DoPut(_REMOTE, '/patients/%s/attachments/1025' % patient, hello) | |
| 1160 self.assertEqual(int(DoGet(_REMOTE, '/patients/%s/statistics' % patient)['DiskSize']), | |
| 1161 int(DoGet(_REMOTE, '/statistics')['TotalDiskSize'])) | |
| 1162 self.assertEqual(int(DoGet(_REMOTE, '/patients/%s/statistics' % patient)['DiskSize']), | |
| 1163 size + int(DoGet(_REMOTE, '/patients/%s/attachments/1025/compressed-size' % patient))) | |
| 1164 | |
| 1165 DoPut(_REMOTE, '/patients/%s/attachments/1026' % patient, 'world') | |
| 1166 self.assertEqual(int(DoGet(_REMOTE, '/patients/%s/statistics' % patient)['DiskSize']), | |
| 1167 int(DoGet(_REMOTE, '/statistics')['TotalDiskSize'])) | |
| 1168 self.assertEqual(int(DoGet(_REMOTE, '/patients/%s/statistics' % patient)['DiskSize']), | |
| 1169 size + | |
| 1170 int(DoGet(_REMOTE, '/patients/%s/attachments/1025/compressed-size' % patient)) + | |
| 1171 int(DoGet(_REMOTE, '/patients/%s/attachments/1026/compressed-size' % patient))) | |
| 1172 | |
| 1173 self.assertEqual(2, len(DoGet(_REMOTE, '/patients/%s/attachments' % patient))) | |
| 1174 self.assertEqual(hello, DoGet(_REMOTE, '/patients/%s/attachments/1025/data' % patient)) | |
| 1175 self.assertEqual('world', DoGet(_REMOTE, '/patients/%s/attachments/1026/data' % patient)) | |
| 1176 DoPost(_REMOTE, '/patients/%s/attachments/1025/verify-md5' % patient) | |
| 1177 DoPost(_REMOTE, '/patients/%s/attachments/1026/verify-md5' % patient) | |
| 1178 DoPut(_REMOTE, '/patients/%s/attachments/1026' % patient, 'world2') | |
| 1179 self.assertEqual('world2', DoGet(_REMOTE, '/patients/%s/attachments/1026/data' % patient)) | |
| 1180 | |
| 1181 self.assertRaises(Exception, lambda: DoDelete(_REMOTE, '/instances/%s/attachments/dicom' % instance)) | |
| 1182 DoDelete(_REMOTE, '/patients/%s/attachments/1025' % patient) | |
| 1183 self.assertEqual(int(DoGet(_REMOTE, '/patients/%s/statistics' % patient)['DiskSize']), | |
| 1184 int(DoGet(_REMOTE, '/statistics')['TotalDiskSize'])) | |
| 1185 self.assertEqual(int(DoGet(_REMOTE, '/patients/%s/statistics' % patient)['DiskSize']), | |
| 1186 size + int(DoGet(_REMOTE, '/patients/%s/attachments/1026/compressed-size' % patient))) | |
| 1187 | |
| 1188 self.assertEqual(1, len(DoGet(_REMOTE, '/patients/%s/attachments' % patient))) | |
| 1189 DoDelete(_REMOTE, '/patients/%s/attachments/1026' % patient) | |
| 1190 self.assertEqual(0, len(DoGet(_REMOTE, '/patients/%s/attachments' % patient))) | |
| 1191 | |
| 1192 self.assertEqual(int(DoGet(_REMOTE, '/patients/%s/statistics' % patient)['DiskSize']), size) | |
| 1193 self.assertEqual(size, int(DoGet(_REMOTE, '/statistics')['TotalDiskSize'])) | |
| 1194 | |
| 1195 | |
| 1196 def test_incoming_storescu(self): | |
| 1197 self.assertEqual(0, len(DoGet(_REMOTE, '/patients'))) | |
| 45 | 1198 subprocess.check_call([ FindExecutable('storescu'), |
|
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1199 _REMOTE['Server'], str(_REMOTE['DicomPort']), |
| 13 | 1200 GetDatabasePath('ColorTestImageJ.dcm') ]) |
| 1201 self.assertEqual(1, len(DoGet(_REMOTE, '/patients'))) | |
| 1202 | |
|
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1203 i = DoGet(_REMOTE, '/instances') |
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1204 self.assertEqual(1, len(i)) |
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1205 m = DoGet(_REMOTE, '/instances/%s/metadata' % i[0]) |
|
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1206 |
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1207 if IsOrthancVersionAbove(_REMOTE, 1, 9, 1): |
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1208 self.assertEqual(9, len(m)) |
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1209 self.assertTrue('PixelDataOffset' in m) # New in Orthanc 1.9.1 |
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1210 else: |
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1211 self.assertEqual(8, len(m)) |
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1212 |
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1213 self.assertTrue('IndexInSeries' in m) |
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1214 self.assertTrue('ReceptionDate' in m) |
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1215 self.assertTrue('RemoteAET' in m) |
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1216 self.assertTrue('Origin' in m) |
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1217 self.assertTrue('TransferSyntax' in m) |
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1218 self.assertTrue('SopClassUid' in m) |
| 145 | 1219 self.assertTrue('RemoteIP' in m) |
| 1220 self.assertTrue('CalledAET' in m) | |
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1221 self.assertEqual(DoGet(_REMOTE, '/instances/%s/metadata/IndexInSeries' % i[0]), 1) |
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1222 self.assertEqual(DoGet(_REMOTE, '/instances/%s/metadata/Origin' % i[0]), 'DicomProtocol') |
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1223 self.assertEqual(DoGet(_REMOTE, '/instances/%s/metadata/RemoteAET' % i[0]), 'STORESCU') |
|
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1224 self.assertEqual(DoGet(_REMOTE, '/instances/%s/metadata/TransferSyntax' % i[0]), '1.2.840.10008.1.2.1') |
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1225 self.assertEqual(DoGet(_REMOTE, '/instances/%s/metadata/SopClassUid' % i[0]), '1.2.840.10008.5.1.4.1.1.7') |
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1226 |
|
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1227 series = DoGet(_REMOTE, '/series')[0] |
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1228 m = DoGet(_REMOTE, '/series/%s/metadata' % series) |
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1229 self.assertEqual(2, len(m)) |
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1230 self.assertTrue('LastUpdate' in m) |
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1231 self.assertTrue('RemoteAET' in m) |
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1232 self.assertEqual(DoGet(_REMOTE, '/series/%s/metadata/RemoteAET' % series), 'STORESCU') |
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1233 self.assertEqual(DoGet(_REMOTE, '/series/%s/metadata/LastUpdate' % series), |
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1234 DoGet(_REMOTE, '/instances/%s/metadata/ReceptionDate' % i[0])) |
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1235 |
| 13 | 1236 |
| 1237 def test_incoming_findscu(self): | |
| 1238 UploadInstance(_REMOTE, 'Multiframe.dcm') | |
| 1239 UploadInstance(_REMOTE, 'ColorTestImageJ.dcm') | |
| 1240 | |
| 1241 i = CallFindScu([ '-k', '0008,0052=PATIENT', '-k', '0010,0010' ]) | |
| 1242 patientNames = re.findall('\(0010,0010\).*?\[(.*?)\]', i) | |
| 1243 self.assertEqual(2, len(patientNames)) | |
| 1244 self.assertTrue('Test Patient BG ' in patientNames) | |
| 1245 self.assertTrue('Anonymized' in patientNames) | |
| 1246 | |
| 1247 i = CallFindScu([ '-k', '0008,0052=SERIES', '-k', '0008,0021' ]) | |
| 1248 series = re.findall('\(0008,0021\).*?\[\s*(.*?)\s*\]', i) | |
| 1249 self.assertEqual(2, len(series)) | |
| 1250 self.assertTrue('20070208' in series) | |
| 1251 self.assertTrue('19980312' in series) | |
| 1252 | |
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1253 i = CallFindScu([ '-k', '0008,0052=SERIES', '-k', '0008,0021', '-k', 'Modality=MR\\XA' ]) |
|
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1254 series = re.findall('\(0008,0021\).*?\[\s*(.*?)\s*\]', i) |
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1255 self.assertEqual(1, len(series)) |
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1256 self.assertTrue('19980312' in series) |
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1257 |
| 13 | 1258 i = CallFindScu([ '-k', '0008,0052=SERIES', '-k', 'PatientName=Anonymized' ]) |
| 1259 series = re.findall('\(0010,0010\).*?\[\s*(.*?)\s*\]', i) | |
| 1260 self.assertEqual(1, len(series)) | |
| 1261 | |
| 1262 # Test the "CaseSentitivePN" flag (false by default) | |
| 1263 i = CallFindScu([ '-k', '0008,0052=SERIES', '-k', 'PatientName=anonymized' ]) | |
| 1264 series = re.findall('\(0010,0010\).*?\[\s*(.*?)\s*\]', i) | |
| 1265 self.assertEqual(1, len(series)) | |
|
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1266 |
| 70 | 1267 # Test range search (buggy if Orthanc <= 0.9.6) |
| 1268 i = CallFindScu([ '-k', '0008,0052=STUDY', '-k', 'StudyDate=19980312-' ]) | |
| 1269 studies = re.findall('\(0008,0020\).*?\[\s*(.*?)\s*\]', i) | |
| 1270 self.assertEqual(2, len(studies)) | |
| 1271 self.assertTrue('20070208' in studies) | |
| 1272 self.assertTrue('19980312' in studies) | |
| 1273 i = CallFindScu([ '-k', '0008,0052=STUDY', '-k', 'StudyDate=19980312-19980312' ]) | |
| 1274 studies = re.findall('\(0008,0020\).*?\[\s*(.*?)\s*\]', i) | |
| 1275 self.assertEqual(1, len(studies)) | |
| 1276 self.assertTrue('19980312' in studies) | |
| 1277 i = CallFindScu([ '-k', '0008,0052=STUDY', '-k', 'StudyDate=-19980312' ]) | |
| 1278 studies = re.findall('\(0008,0020\).*?\[\s*(.*?)\s*\]', i) | |
| 1279 self.assertEqual(1, len(studies)) | |
| 1280 self.assertTrue('19980312' in studies) | |
|
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1281 |
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1282 # Test that "Retrieve AE Title (0008,0054)" is present, which |
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1283 # was *not* the case in Orthanc <= 1.7.2 |
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1284 i = CallFindScu([ '-k', '0008,0052=INSTANCE' ]) |
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1285 instances = re.findall('\(0008,0054\).*?\[\s*(.*?)\s*\]', i) |
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1286 self.assertEqual(2, len(instances)) |
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1287 self.assertEqual('ORTHANC', instances[0].strip()) |
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1288 self.assertEqual('ORTHANC', instances[1].strip()) |
| 13 | 1289 |
| 1290 | |
|
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1291 def test_incoming_findscu_2(self): |
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1292 # This test fails if "LookupMode_DatabaseOnly" is used |
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1293 # (sequences are not available in this mode, and only main |
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1294 # DICOM tags are returned) |
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1295 UploadInstance(_REMOTE, 'Multiframe.dcm') |
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1296 UploadInstance(_REMOTE, 'ColorTestImageJ.dcm') |
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1297 |
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1298 # Test returning sequence values (only since Orthanc 0.9.5) |
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1299 i = CallFindScu([ '-k', '0008,0052=SERIES', '-k', '0008,2112' ]) # "ColorTestImageJ" has this sequence tag |
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1300 sequences = re.findall('\(0008,2112\)', i) |
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1301 self.assertEqual(1, len(sequences)) |
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1302 |
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1303 # Test returning a non-main DICOM tag, |
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1304 # "SecondaryCaptureDeviceID" (0018,1010), whose value is |
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1305 # "MEDPC" in "ColorTestImageJ.dcm" |
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1306 i = CallFindScu([ '-k', '0008,0052=SERIES', '-k', '0018,1010' ]) |
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1307 tags = re.findall('\(0018,1010\).*MEDPC', i) |
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1308 self.assertEqual(1, len(tags)) |
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1309 |
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1310 |
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1311 def test_incoming_findscu_3(self): |
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1312 # This test fails if "LookupMode_DatabaseOnly" or |
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1313 # "LookupMode_DiskOnAnswer" is used, as |
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1314 # "SecondaryCaptureDeviceID" (0018,1010) is not a main DICOM |
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1315 # tag, as thus a constraint cannot be applied to it |
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1316 UploadInstance(_REMOTE, 'ColorTestImageJ.dcm') |
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1317 |
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1318 i = CallFindScu([ '-k', '0008,0052=SERIES', '-k', '0018,1010=MEDPC' ]) |
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1319 sequences = re.findall('\(0018,1010\)', i) |
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1320 self.assertEqual(1, len(sequences)) |
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1321 |
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1322 |
| 13 | 1323 def test_incoming_movescu(self): |
| 1324 UploadInstance(_REMOTE, 'Multiframe.dcm') | |
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1325 |
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1326 # No matching patient, so no job is created |
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1327 self.assertEqual(0, len(DoGet(_LOCAL, '/patients'))) |
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1328 CallMoveScu([ '--patient', '-k', '0008,0052=PATIENT', '-k', 'PatientID=none' ]) |
| 13 | 1329 self.assertEqual(0, len(DoGet(_LOCAL, '/patients'))) |
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1330 |
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1331 # 1 Matching patient, track the job |
| 138 | 1332 self.assertTrue(MonitorJob(_REMOTE, lambda: CallMoveScu([ |
| 1333 '--patient', | |
| 1334 '-k', '0008,0052=PATIENT', | |
| 1335 '-k', 'PatientID=12345678' | |
| 1336 ]))) | |
| 13 | 1337 self.assertEqual(1, len(DoGet(_LOCAL, '/patients'))) |
| 1338 | |
| 1339 | |
| 1340 def test_findscu(self): | |
| 1341 i = UploadInstance(_REMOTE, 'DummyCT.dcm')['ID'] | |
| 1342 j = UploadInstance(_REMOTE, 'Issue22.dcm')['ID'] | |
| 1343 k = UploadInstance(_REMOTE, 'ColorTestImageJ.dcm')['ID'] | |
| 1344 DoPost(_REMOTE, '/modalities/orthanctest/store', str(i), 'text/plain') | |
| 1345 | |
| 1346 # Test the "find-patient" level | |
| 1347 p = DoPost(_REMOTE, '/modalities/orthanctest/find-patient', { }) | |
| 1348 self.assertEqual(1, len(p)) | |
| 1349 self.assertEqual('ozp00SjY2xG', p[0]['PatientID']) | |
| 1350 | |
| 1351 # Test wildcards constraints. The "LO" value representation | |
| 1352 # for PatientID is always case-sensitive, but the "PN" for | |
| 1353 # PatientName might depend on the implementation: | |
| 1354 # "GenerateConfigurationForTests.py" will force it to be case | |
| 1355 # insensitive (which was the default until Orthanc 0.8.6). | |
| 1356 p = DoPost(_REMOTE, '/modalities/orthanctest/find-patient', { 'PatientName' : 'K*' }) | |
| 1357 self.assertEqual(1, len(p)) | |
| 1358 | |
| 1359 p = DoPost(_REMOTE, '/modalities/orthanctest/find-patient', { 'PatientName' : 'k*' }) | |
| 1360 self.assertEqual(1, len(p)) | |
| 1361 | |
| 1362 p = DoPost(_REMOTE, '/modalities/orthanctest/find-patient', { 'PatientID' : 'ozp*' }) | |
| 1363 self.assertEqual(1, len(p)) | |
| 1364 | |
| 1365 p = DoPost(_REMOTE, '/modalities/orthanctest/find-patient', { 'PatientID' : 'o?p*' }) | |
| 1366 self.assertEqual(1, len(p)) | |
| 1367 | |
| 1368 p = DoPost(_REMOTE, '/modalities/orthanctest/find-patient', { 'PatientID' : '0?q*' }) | |
| 1369 self.assertEqual(0, len(p)) | |
| 1370 | |
| 1371 p = DoPost(_REMOTE, '/modalities/orthanctest/find-patient', { 'PatientName' : 'B*' }) | |
| 1372 self.assertEqual(0, len(p)) | |
| 1373 | |
| 1374 p = DoPost(_REMOTE, '/modalities/orthanctest/find-patient', { 'PatientName' : 'b*' }) | |
| 1375 self.assertEqual(0, len(p)) | |
| 1376 | |
| 1377 DoPost(_REMOTE, '/modalities/orthanctest/store', str(j), 'text/plain') | |
| 1378 DoPost(_REMOTE, '/modalities/orthanctest/store', str(k), 'text/plain') | |
| 1379 DoPost(_REMOTE, '/modalities/orthanctest/find-patient', { }) | |
| 1380 self.assertEqual(3, len(DoPost(_REMOTE, '/modalities/orthanctest/find-patient', { }))) | |
| 1381 | |
| 1382 p = DoPost(_REMOTE, '/modalities/orthanctest/find-patient', { 'PatientName' : 'A*' }) | |
| 1383 self.assertEqual(2, len(p)) | |
| 1384 | |
| 1385 # Test the "find-study" level. This is the instance "ColorTestImageJ.dcm" | |
| 1386 s = DoPost(_REMOTE, '/modalities/orthanctest/find-study', { 'PatientID' : 'B9uTHKOZ' }) | |
| 1387 self.assertEqual(1, len(s)) | |
| 1388 self.assertEqual('20070208', s[0]['StudyDate']) | |
| 1389 | |
| 1390 # Test range searches | |
| 1391 t = DoPost(_REMOTE, '/modalities/orthanctest/find-study', { 'PatientID' : 'B9uTHKOZ', | |
| 1392 'StudyDate' : '-20070101' }) | |
| 1393 self.assertEqual(0, len(t)) | |
| 1394 | |
| 1395 t = DoPost(_REMOTE, '/modalities/orthanctest/find-study', { 'PatientID' : 'B9uTHKOZ', | |
| 1396 'StudyDate' : '20090101-' }) | |
| 1397 self.assertEqual(0, len(t)) | |
| 1398 | |
| 1399 t = DoPost(_REMOTE, '/modalities/orthanctest/find-study', { 'PatientID' : 'B9uTHKOZ', | |
| 1400 'StudyDate' : '20070101-' }) | |
| 1401 self.assertEqual(1, len(t)) | |
| 1402 | |
| 1403 t = DoPost(_REMOTE, '/modalities/orthanctest/find-study', { 'PatientID' : 'B9uTHKOZ', | |
| 1404 'StudyDate' : '-20090101' }) | |
| 1405 self.assertEqual(1, len(t)) | |
| 1406 | |
| 1407 t = DoPost(_REMOTE, '/modalities/orthanctest/find-study', { 'PatientID' : 'B9uTHKOZ', | |
| 1408 'StudyDate' : '20070207-20070207' }) | |
| 1409 self.assertEqual(0, len(t)) | |
| 1410 | |
| 1411 t = DoPost(_REMOTE, '/modalities/orthanctest/find-study', { 'PatientID' : 'B9uTHKOZ', | |
| 1412 'StudyDate' : '20070208-20070208' }) | |
| 1413 self.assertEqual(1, len(t)) | |
| 1414 | |
| 1415 t = DoPost(_REMOTE, '/modalities/orthanctest/find-study', { 'PatientID' : 'B9uTHKOZ', | |
| 1416 'StudyDate' : '20070209-20070209' }) | |
| 1417 self.assertEqual(0, len(t)) | |
| 1418 | |
| 1419 # Test the ModalitiesInStudy tag | |
| 1420 t = DoPost(_REMOTE, '/modalities/orthanctest/find-study', { | |
| 1421 'PatientID' : 'B9uTHKOZ', | |
| 1422 'ModalitiesInStudy' : 'US' }) | |
| 1423 self.assertEqual(0, len(t)) | |
| 1424 | |
| 1425 t = DoPost(_REMOTE, '/modalities/orthanctest/find-study', { | |
| 1426 'PatientID' : 'B9uTHKOZ', | |
| 1427 'ModalitiesInStudy' : 'CT' }) | |
| 1428 self.assertEqual(1, len(t)) | |
| 1429 | |
| 1430 t = DoPost(_REMOTE, '/modalities/orthanctest/find-study', { | |
| 1431 'PatientID' : 'B9uTHKOZ', | |
| 1432 'ModalitiesInStudy' : 'US\\CT' }) | |
| 1433 self.assertEqual(1, len(t)) | |
| 1434 | |
| 1435 # Test the "find-series" level | |
| 1436 t = DoPost(_REMOTE, '/modalities/orthanctest/find-series', { | |
| 1437 'PatientID' : 'B9uTHKOZ', | |
| 1438 'StudyInstanceUID' : s[0]['StudyInstanceUID'] }) | |
| 1439 self.assertEqual(1, len(t)) | |
| 1440 | |
| 1441 # Test "\" separator | |
| 1442 t = DoPost(_REMOTE, '/modalities/orthanctest/find-series', { | |
| 1443 'PatientID' : 'B9uTHKOZ', | |
| 1444 'StudyInstanceUID' : s[0]['StudyInstanceUID'], | |
| 1445 'Modality' : 'MR\\CT\\US' }) | |
| 1446 self.assertEqual(1, len(t)) | |
| 1447 | |
| 1448 t = DoPost(_REMOTE, '/modalities/orthanctest/find-series', { | |
| 1449 'PatientID' : 'B9uTHKOZ', | |
| 1450 'StudyInstanceUID' : s[0]['StudyInstanceUID'], | |
| 1451 'Modality' : 'MR\\US' }) | |
| 1452 self.assertEqual(0, len(t)) | |
| 1453 | |
| 1454 | |
| 1455 def test_update_modalities(self): | |
| 1456 try: | |
| 1457 DoDelete(_REMOTE, '/modalities/toto') | |
| 1458 except: | |
| 1459 pass | |
| 1460 try: | |
| 1461 DoDelete(_REMOTE, '/modalities/tata') | |
| 1462 except: | |
| 1463 pass | |
| 1464 self.assertRaises(Exception, lambda: DoGet(_REMOTE, '/modalities/toto')) | |
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1465 self.assertRaises(Exception, lambda: DoDelete(_REMOTE, '/modalities/toto')) |
| 13 | 1466 DoPut(_REMOTE, '/modalities/toto', [ "STORESCP", "localhost", 2000 ]) |
| 116 | 1467 DoPut(_REMOTE, '/modalities/tata', [ "STORESCP", "localhost", 2000, 'MedInria' ]) # check backward compatiblity with obsolete manufacturer |
| 1468 DoDelete(_REMOTE, '/modalities/tata') | |
| 124 | 1469 DoPut(_REMOTE, '/modalities/tata', [ "STORESCP", "localhost", 2000, 'GenericNoUniversalWildcard' ]) |
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1470 DoDelete(_REMOTE, '/modalities/tata') |
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1471 DoPut(_REMOTE, '/modalities/tata', [ "STORESCP", "localhost", 2000, 'GenericNoWildcardInDates' ]) |
| 128 | 1472 modalitiesReadback = DoGet(_REMOTE, '/modalities?expand') |
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1473 self.assertEqual('STORESCP', modalitiesReadback['tata']['AET']) |
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1474 self.assertEqual('localhost', modalitiesReadback['tata']['Host']) |
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1475 self.assertEqual(2000, modalitiesReadback['tata']['Port']) |
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1476 self.assertEqual('GenericNoWildcardInDates', modalitiesReadback['tata']['Manufacturer']) |
| 116 | 1477 self.assertRaises(Exception, lambda: DoPut(_REMOTE, '/modalities/toto', [ "STORESCP", "localhost", 2000, 'InvalidManufacturerName' ])) |
| 13 | 1478 self.assertTrue('store' in DoGet(_REMOTE, '/modalities/toto')) |
| 1479 self.assertTrue('store' in DoGet(_REMOTE, '/modalities/tata')) | |
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1480 |
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1481 # New in Orthanc 1.8.1 |
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1482 self.assertTrue('configuration' in DoGet(_REMOTE, '/modalities/tata')) |
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1483 self.assertEqual(modalitiesReadback['tata'], DoGet(_REMOTE, '/modalities/tata/configuration')) |
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1484 |
| 13 | 1485 DoDelete(_REMOTE, '/modalities/toto') |
| 1486 DoDelete(_REMOTE, '/modalities/tata') | |
| 1487 self.assertRaises(Exception, lambda: DoGet(_REMOTE, '/modalities/toto')) | |
| 1488 self.assertRaises(Exception, lambda: DoGet(_REMOTE, '/modalities/tata')) | |
| 1489 | |
| 1490 | |
| 1491 def test_update_peers(self): | |
| 1492 # curl -X PUT http://localhost:8042/peers/toto -d '["http://localhost:8042/"]' -v | |
| 1493 try: | |
| 1494 DoDelete(_REMOTE, '/peers/toto') | |
| 1495 except: | |
| 1496 pass | |
| 1497 try: | |
| 1498 DoDelete(_REMOTE, '/peers/tata') | |
| 1499 except: | |
| 1500 pass | |
| 1501 self.assertRaises(Exception, lambda: DoGet(_REMOTE, '/peers/toto')) | |
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1502 self.assertRaises(Exception, lambda: DoDelete(_REMOTE, '/peers/toto')) |
| 13 | 1503 DoPut(_REMOTE, '/peers/toto', [ 'http://localhost:8042/' ]) |
| 214 | 1504 DoPut(_REMOTE, '/peers/tata', { 'Url': 'http://localhost:8042/', |
| 1505 'Username': 'user', | |
| 1506 'Password' : 'pass', | |
| 1507 'RemoteSelf' : 'self' }) | |
| 128 | 1508 self.assertTrue('tata' in DoGet(_REMOTE, '/peers')) |
| 1509 peersReadback = DoGet(_REMOTE, '/peers?expand') | |
| 1510 self.assertEqual('http://localhost:8042/', peersReadback['tata']['Url']) | |
| 1511 self.assertEqual('user', peersReadback['tata']['Username']) | |
| 214 | 1512 |
| 1513 if IsOrthancVersionAbove(_REMOTE, 1, 5, 4): | |
| 1514 self.assertEqual(None, peersReadback['tata']['Password']) # make sure no sensitive data is included | |
| 1515 self.assertFalse(peersReadback['tata']['Pkcs11']) # make sure no sensitive data is included | |
| 1516 self.assertEqual('self', peersReadback['tata']['RemoteSelf']) | |
| 1517 else: | |
| 1518 self.assertFalse('Password' in peersReadback['tata']) # make sure no sensitive data is included | |
| 1519 self.assertFalse('Pkcs11' in peersReadback['tata']) # make sure no sensitive data is included | |
| 1520 self.assertFalse('RemoteSelf' in peersReadback['tata']) | |
| 1521 | |
| 128 | 1522 self.assertFalse('CertificateFile' in peersReadback['tata']) # make sure no sensitive data is included |
| 1523 self.assertFalse('CertificateKeyFile' in peersReadback['tata']) # make sure no sensitive data is included | |
| 1524 self.assertFalse('CertificateKeyPassword' in peersReadback['tata']) # make sure no sensitive data is included | |
| 214 | 1525 |
| 13 | 1526 self.assertRaises(Exception, lambda: DoPut(_REMOTE, '/peers/toto', [ 'http://localhost:8042/', 'a' ])) |
| 1527 self.assertRaises(Exception, lambda: DoPut(_REMOTE, '/peers/toto', [ 'http://localhost:8042/', 'a', 'b', 'c' ])) | |
| 1528 self.assertTrue('store' in DoGet(_REMOTE, '/peers/toto')) | |
| 1529 self.assertTrue('store' in DoGet(_REMOTE, '/peers/tata')) | |
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1530 |
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1531 # New in Orthanc 1.8.1 |
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1532 self.assertTrue('configuration' in DoGet(_REMOTE, '/peers/tata')) |
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1533 self.assertEqual(peersReadback['tata'], DoGet(_REMOTE, '/peers/tata/configuration')) |
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1534 |
| 13 | 1535 DoDelete(_REMOTE, '/peers/toto') |
| 1536 DoDelete(_REMOTE, '/peers/tata') | |
| 1537 self.assertRaises(Exception, lambda: DoGet(_REMOTE, '/peers/toto')) | |
| 1538 self.assertRaises(Exception, lambda: DoGet(_REMOTE, '/peers/tata')) | |
| 1539 | |
| 1540 | |
| 1541 def test_mesterhazy_modification(self): | |
| 1542 # When I modify a series ( eg. curl | |
| 1543 # http://localhost:8042/series/uidhere/modify -X POST -d | |
| 1544 # '{"Replace":{"SeriesDate":"19990101"}}' ) the modified | |
| 1545 # series is added to a new Study, instead of the existing | |
| 1546 # Study. Fixed in Orthanc 0.7.5 | |
| 1547 | |
| 1548 u = UploadInstance(_REMOTE, 'DummyCT.dcm') | |
| 1549 study = 'b9c08539-26f93bde-c81ab0d7-bffaf2cb-a4d0bdd0' | |
| 1550 series = 'f2635388-f01d497a-15f7c06b-ad7dba06-c4c599fe' | |
| 1551 | |
| 1552 modified = DoPost(_REMOTE, '/series/%s/modify' % series, | |
| 1553 json.dumps({ "Replace" : { "SeriesDate" : "19990101" }})) | |
| 1554 | |
| 1555 self.assertEqual(study, DoGet(_REMOTE, '/series/%s' % modified['ID']) ['ParentStudy']) | |
| 1556 | |
| 1557 | |
| 1558 def test_create(self): | |
| 1559 i = DoPost(_REMOTE, '/tools/create-dicom', | |
| 1560 json.dumps({ | |
| 1561 'PatientName' : 'Jodogne', | |
| 1562 'Modality' : 'CT', | |
| 58 | 1563 'SOPClassUID' : '1.2.840.10008.5.1.4.1.1.1', |
| 13 | 1564 'PixelData' : 'data:image/png;base64,iVBORw0KGgoAAAANSUhEUgAAAAUAAAAFCAYAAACNbyblAAAAHElEQVQI12P4//8/w38GIAXDIBKE0DHxgljNBAAO9TXL0Y4OHwAAAABJRU5ErkJggg==' # red dot in RGBA |
| 1565 })) | |
| 1566 | |
| 1567 self.assertEqual('Jodogne', DoGet(_REMOTE, '/instances/%s/content/PatientName' % i['ID']).strip()) | |
| 1568 self.assertEqual('CT', DoGet(_REMOTE, '/instances/%s/content/Modality' % i['ID']).strip()) | |
| 1569 | |
| 1570 png = GetImage(_REMOTE, '/instances/%s/preview' % i['ID']) | |
| 1571 self.assertEqual((5, 5), png.size) | |
| 1572 | |
| 38 | 1573 j = DoGet(_REMOTE, i['Path']) |
| 1574 self.assertEqual('Instance', j['Type']) | |
| 1575 self.assertEqual(j['ID'], i['ID']) | |
| 1576 | |
| 13 | 1577 |
| 1578 def test_pilates(self): | |
| 1579 # "SCU failed error when accessing orthanc with osirix" by | |
| 1580 # Pilates Agentur (Mar 10, 2014 at 9:33 PM) | |
| 1581 i = UploadInstance(_REMOTE, 'PilatesArgenturGEUltrasoundOsiriX.dcm')['ID'] | |
| 1582 self.assertEqual(0, len(DoGet(_LOCAL, '/patients'))) | |
| 1583 j = DoPost(_REMOTE, '/modalities/orthanctest/store', str(i), 'text/plain') | |
| 1584 self.assertEqual(1, len(DoGet(_LOCAL, '/patients'))) | |
| 1585 | |
| 1586 | |
| 1587 def test_shared_tags(self): | |
| 1588 a = UploadInstance(_REMOTE, 'Knee/T1/IM-0001-0001.dcm')['ID'] | |
| 1589 b = UploadInstance(_REMOTE, 'Knee/T1/IM-0001-0002.dcm')['ID'] | |
| 1590 p = DoGet(_REMOTE, '/patients')[0] | |
| 1591 | |
| 1592 self.assertTrue('0010,0010' in DoGet(_REMOTE, '/patients/%s/shared-tags' % p)) | |
| 1593 self.assertTrue('PatientName' in DoGet(_REMOTE, '/patients/%s/shared-tags?simplify' % p)) | |
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1594 self.assertTrue('0010,0010' in DoGet(_REMOTE, '/patients/%s/shared-tags?short' % p)) |
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1595 |
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1596 self.assertEqual('KNEE', DoGet(_REMOTE, '/patients/%s/shared-tags' % p)['0010,0010']['Value']) |
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1597 self.assertEqual('KNEE', DoGet(_REMOTE, '/patients/%s/shared-tags?simplify' % p)['PatientName']) |
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1598 self.assertEqual('KNEE', DoGet(_REMOTE, '/patients/%s/shared-tags?short' % p)['0010,0010']) |
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1599 |
| 13 | 1600 self.assertTrue('0008,1030' in DoGet(_REMOTE, '/patients/%s/shared-tags' % p)) |
| 1601 self.assertTrue('StudyDescription' in DoGet(_REMOTE, '/patients/%s/shared-tags?simplify' % p)) | |
| 1602 self.assertTrue('0008,103e' in DoGet(_REMOTE, '/patients/%s/shared-tags' % p)) | |
| 1603 self.assertTrue('SeriesDescription' in DoGet(_REMOTE, '/patients/%s/shared-tags?simplify' % p)) | |
| 1604 self.assertFalse('0008,0018' in DoGet(_REMOTE, '/patients/%s/shared-tags' % p)) | |
| 1605 self.assertFalse('SOPInstanceUID' in DoGet(_REMOTE, '/patients/%s/shared-tags?simplify' % p)) | |
| 1606 | |
| 1607 self.assertTrue('0008,0018' in DoGet(_REMOTE, '/instances/%s/tags' % a)) | |
| 1608 self.assertTrue('SOPInstanceUID' in DoGet(_REMOTE, '/instances/%s/tags?simplify' % a)) | |
| 1609 | |
| 1610 | |
| 1611 def test_modules(self): | |
| 1612 a = UploadInstance(_REMOTE, 'Knee/T1/IM-0001-0001.dcm')['ID'] | |
| 1613 p = DoGet(_REMOTE, '/patients')[0] | |
| 1614 s = DoGet(_REMOTE, '/studies')[0] | |
| 1615 t = DoGet(_REMOTE, '/series')[0] | |
| 1616 | |
| 1617 self.assertTrue('0010,0010' in DoGet(_REMOTE, '/patients/%s/module' % p)) | |
| 1618 self.assertTrue('PatientName' in DoGet(_REMOTE, '/patients/%s/module?simplify' % p)) | |
| 1619 self.assertTrue('0010,0010' in DoGet(_REMOTE, '/studies/%s/module-patient' % p)) | |
| 1620 self.assertTrue('PatientName' in DoGet(_REMOTE, '/studies/%s/module-patient?simplify' % p)) | |
| 1621 self.assertTrue('0008,1030' in DoGet(_REMOTE, '/studies/%s/module' % s)) | |
| 1622 self.assertTrue('StudyDescription' in DoGet(_REMOTE, '/studies/%s/module?simplify' % s)) | |
| 1623 self.assertTrue('0008,103e' in DoGet(_REMOTE, '/series/%s/module' % p)) | |
| 1624 self.assertTrue('SeriesDescription' in DoGet(_REMOTE, '/series/%s/module?simplify' % p)) | |
| 1625 self.assertTrue('0008,0018' in DoGet(_REMOTE, '/instances/%s/module' % a)) | |
| 1626 self.assertTrue('SOPInstanceUID' in DoGet(_REMOTE, '/instances/%s/module?simplify' % a)) | |
| 1627 | |
| 1628 | |
| 1629 def test_auto_directory(self): | |
| 1630 a = UploadInstance(_REMOTE, 'Knee/T1/IM-0001-0001.dcm')['ID'] | |
| 1631 self.assertTrue('now' in DoGet(_REMOTE, '/tools')) | |
| 1632 self.assertTrue('dicom-conformance' in DoGet(_REMOTE, '/tools')) | |
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1633 self.assertTrue('invalidate-tags' in DoGet(_REMOTE, '/tools')) |
| 13 | 1634 self.assertTrue(len(DoGet(_REMOTE, '/tools/dicom-conformance')) > 1000) |
| 1635 self.assertTrue('orthanctest' in DoGet(_REMOTE, '/modalities')) | |
| 1636 self.assertTrue('echo' in DoGet(_REMOTE, '/modalities/orthanctest')) | |
| 1637 self.assertTrue('find' in DoGet(_REMOTE, '/modalities/orthanctest')) | |
| 1638 self.assertTrue('find-instance' in DoGet(_REMOTE, '/modalities/orthanctest')) | |
| 1639 self.assertTrue('find-patient' in DoGet(_REMOTE, '/modalities/orthanctest')) | |
| 1640 self.assertTrue('find-series' in DoGet(_REMOTE, '/modalities/orthanctest')) | |
| 1641 self.assertTrue('find-study' in DoGet(_REMOTE, '/modalities/orthanctest')) | |
| 1642 self.assertTrue('store' in DoGet(_REMOTE, '/modalities/orthanctest')) | |
| 1643 self.assertTrue('store' in DoGet(_REMOTE, '/peers/peer')) | |
| 1644 self.assertTrue('matlab' in DoGet(_REMOTE, '/instances/%s/frames/0' % a)) | |
| 79 | 1645 self.assertTrue('raw' in DoGet(_REMOTE, '/instances/%s/frames/0' % a)) |
| 13 | 1646 self.assertRaises(Exception, lambda: DoGet(_REMOTE, '/tools/nope')) |
| 28 | 1647 self.assertRaises(Exception, lambda: DoGet(_REMOTE, '/nope')) |
| 1648 self.assertRaises(Exception, lambda: DoGet(_REMOTE, '/nope/nope.html')) | |
| 1649 self.assertEqual(404, DoGetRaw(_REMOTE, '/nope')[0].status) | |
| 1650 self.assertEqual(404, DoGetRaw(_REMOTE, '/nope/nope.html')[0].status) | |
| 13 | 1651 |
| 1652 | |
| 1653 def test_echo(self): | |
| 1654 DoPost(_REMOTE, '/modalities/orthanctest/echo') | |
|
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1655 DoPost(_REMOTE, '/modalities/orthanctest/echo', '{}') |
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1656 |
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1657 # The following was not working in Orthanc 1.7.0 -> 1.8.1 |
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1658 DoPost(_REMOTE, '/modalities/orthanctest/echo', '') |
|
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1659 self.assertRaises(Exception, lambda: DoGet(_REMOTE, '/modalities/nope/echo')) |
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1660 |
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1661 # New in Orthanc 1.8.1 |
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1662 DoPost(_REMOTE, '/tools/dicom-echo', [ |
| 355 | 1663 _REMOTE['DicomAet'], _REMOTE['Server'], _REMOTE['DicomPort'] ]) |
|
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1664 DoPost(_REMOTE, '/tools/dicom-echo', DoGet(_REMOTE, '/modalities/orthanctest/configuration')) |
| 13 | 1665 |
| 353 | 1666 # Use the 'CheckFind' new option in Orthanc 1.8.1 |
| 1667 DoPost(_REMOTE, '/modalities/self/echo', { 'CheckFind' : True }) | |
| 1668 DoPost(_REMOTE, '/tools/dicom-echo', { | |
| 1669 'AET' : _REMOTE['DicomAet'], | |
| 1670 'Host' : _REMOTE['Server'], | |
| 1671 'Port' : _REMOTE['DicomPort'], | |
| 1672 'CheckFind' : True | |
| 1673 }) | |
| 1674 | |
| 13 | 1675 |
| 1676 def test_xml(self): | |
| 1677 json = DoGet(_REMOTE, '/tools', headers = { 'accept' : 'application/json' }) | |
| 1678 xml = minidom.parseString(DoGet(_REMOTE, '/tools', headers = { 'accept' : 'application/xml' })) | |
| 1679 items = xml.getElementsByTagName('root')[0].getElementsByTagName('item') | |
| 1680 self.assertEqual(len(items), len(json)) | |
| 1681 | |
| 1682 self.assertTrue('dicom-conformance' in json) | |
| 1683 | |
| 1684 ok = False | |
| 1685 for i in items: | |
| 1686 if i.childNodes[0].data == 'dicom-conformance': | |
| 1687 ok = True | |
| 1688 self.assertTrue(ok) | |
| 1689 | |
| 1690 | |
|
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1691 def test_googlecode_issue_16(self): |
| 13 | 1692 i = UploadInstance(_REMOTE, 'Issue16.dcm')['ID'] |
| 1693 t = DoGet(_REMOTE, '/instances/%s/tags?simplify' % i)['FrameIncrementPointer'] | |
| 1694 self.assertEqual('0018,1063', t) | |
| 1695 | |
| 1696 | |
|
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1697 def test_googlecode_issue_22(self): |
| 13 | 1698 s = UploadInstance(_REMOTE, 'Issue22.dcm')['ID'] |
| 1699 a = [ | |
| 1700 "f804691f62197040438f4627c6b994f1", # Frame 0 | |
| 1701 "c69eee9a51eea3e8611e82e578897254", | |
| 1702 "315666be83e2d0111c77bc0996d84901", | |
| 1703 "3e27aa959d911172c48a1436443c72b1", | |
| 1704 "958642c9e7e9d232d3869faff546058c", | |
| 1705 "5e7ea8e3e4230cae707d143481355c59", | |
| 1706 "eda37f83558d858a596175aed8b2ad47", | |
| 1707 "486713bd2895c4ecbe0e97715ac7f80a", | |
| 1708 "091ef729eb169e67da8a0faa9631f9a8", | |
| 1709 "5aa2b8c7ffe0a483efaa8e12417686ca", | |
| 1710 "e2f39e85896fe58876654b94cd0b5013", | |
| 1711 "6fd2129e4950abbe1be053bc814d5da8", | |
| 1712 "c3331a8ba7a757f3d423735ab7fa81f9", | |
| 1713 "746f808582156734dd6b6fdfd3a0b72c", | |
| 1714 "8075ea2b227a70c60ea6b7b75a6bb190", | |
| 1715 "806b8b3e300c615099c11a5ec23465aa", | |
| 1716 "7c836aa298ba6eef96434579af631a11", | |
| 1717 "a0357dc9f4f72d73a885c33d7c287446", | |
| 1718 "f25ba3be1cc7d7fad95706adc199ea7d", | |
| 1719 "8b114c526b8cbed6cad8a3248b7b480c", | |
| 1720 "44e6670f127e612a2b4aa60a0d207698", | |
| 1721 "b8945f90fe02facf2ace24ca1ecbe0a5", | |
| 1722 "95c796c2fa8f59018b15cf2987b1f79b", | |
| 1723 "ce0a51ab30224205b44920221dc27351", # Frame 23 | |
| 1724 ] | |
| 1725 | |
| 1726 self.assertEqual(24, len(DoGet(_REMOTE, '/instances/%s/frames' % s))) | |
| 1727 self.assertRaises(Exception, lambda: DoGet(_REMOTE, '/instances/%s/frames/24/preview' % s)) | |
| 1728 | |
| 1729 for i in range(len(a)): | |
| 1730 self.assertEqual(a[i], ComputeMD5(DoGet(_REMOTE, '/instances/%s/frames/%d/preview' % (s, i)))) | |
| 1731 | |
| 1732 | |
|
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1733 def test_googlecode_issue_19(self): |
|
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1734 # This is an image with "YBR_FULL" photometric interpretation, it is not supported by Orthanc |
| 13 | 1735 # gdcmconv -i /home/jodogne/DICOM/GdcmDatabase/US_DataSet/HDI5000_US/3EAF5E01 -w -o Issue19.dcm |
| 1736 | |
| 1737 a = UploadInstance(_REMOTE, 'Issue19.dcm')['ID'] | |
| 304 | 1738 if not HasGdcmPlugin(_REMOTE): |
|
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1739 self.assertRaises(Exception, lambda: DoGet(_REMOTE, '/instances/941ad3c8-05d05b88-560459f9-0eae0e20-6cddd533/preview')) |
| 13 | 1740 |
| 1741 | |
|
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1742 def test_googlecode_issue_37(self): |
| 13 | 1743 # Same test for issues 35 and 37. Fixed in Orthanc 0.9.1 |
| 1744 u = UploadInstance(_REMOTE, 'Beaufix/IM-0001-0001.dcm')['ID'] | |
| 1745 | |
| 1746 a = DoPost(_REMOTE, '/tools/find', { 'Level' : 'Series', | |
| 1747 'CaseSensitive' : True, | |
| 1748 'Query' : { 'StationName' : 'SMR4-MP3' }}) | |
| 1749 self.assertEqual(1, len(a)) | |
| 14 | 1750 |
| 1751 | |
| 1752 def test_rest_find(self): | |
| 1753 # Upload 8 instances | |
| 1754 for i in range(2): | |
| 1755 UploadInstance(_REMOTE, 'Brainix/Flair/IM-0001-000%d.dcm' % (i + 1)) | |
| 1756 UploadInstance(_REMOTE, 'Brainix/Epi/IM-0001-000%d.dcm' % (i + 1)) | |
| 1757 UploadInstance(_REMOTE, 'Knee/T1/IM-0001-000%d.dcm' % (i + 1)) | |
| 1758 UploadInstance(_REMOTE, 'Knee/T2/IM-0001-000%d.dcm' % (i + 1)) | |
| 1759 | |
| 1760 a = DoPost(_REMOTE, '/tools/find', { 'Level' : 'Patient', | |
| 1761 'CaseSensitive' : False, | |
|
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1762 'Query' : { 'PatientName' : 'BRAINIX' }}) |
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1763 self.assertEqual(1, len(a)) |
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1764 |
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1765 a = DoPost(_REMOTE, '/tools/find', { 'Level' : 'Patient', |
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1766 'CaseSensitive' : False, |
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1767 'Query' : { 'PatientName' : 'BRAINIX\\KNEE\\NOPE' }}) |
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1768 self.assertEqual(2, len(a)) |
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1769 |
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1770 a = DoPost(_REMOTE, '/tools/find', { 'Level' : 'Patient', |
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1771 'CaseSensitive' : False, |
| 14 | 1772 'Query' : { 'PatientName' : '*n*' }}) |
| 1773 self.assertEqual(2, len(a)) | |
| 1774 | |
| 1775 a = DoPost(_REMOTE, '/tools/find', { 'Level' : 'Patient', | |
| 1776 'CaseSensitive' : True, | |
| 1777 'Query' : { 'PatientName' : '*n*' }}) | |
| 1778 self.assertEqual(0, len(a)) | |
| 1779 | |
| 1780 a = DoPost(_REMOTE, '/tools/find', { 'Expand' : True, | |
| 1781 'Level' : 'Patient', | |
| 1782 'CaseSensitive' : False, | |
| 1783 'Query' : { 'PatientName' : '*ne*' }}) | |
| 1784 self.assertEqual(1, len(a)) | |
| 1785 self.assertEqual('20080822', a[0]['MainDicomTags']['PatientBirthDate']) | |
| 1786 | |
| 1787 a = DoPost(_REMOTE, '/tools/find', { 'Level' : 'Patient', | |
| 1788 'CaseSensitive' : True, | |
| 1789 'Query' : { 'PatientName' : '*ne*' }}) | |
| 1790 self.assertEqual(0, len(a)) | |
| 1791 | |
| 1792 a = DoPost(_REMOTE, '/tools/find', { 'Level' : 'Study', | |
| 1793 'CaseSensitive' : True, | |
| 1794 'Query' : { 'PatientName' : '*NE*' }}) | |
| 1795 self.assertEqual(1, len(a)) | |
| 1796 | |
| 1797 a = DoPost(_REMOTE, '/tools/find', { 'Level' : 'Series', | |
| 1798 'CaseSensitive' : True, | |
| 1799 'Query' : { 'PatientName' : '*NE*' }}) | |
| 1800 self.assertEqual(2, len(a)) | |
| 1801 | |
| 1802 a = DoPost(_REMOTE, '/tools/find', { 'Level' : 'Instance', | |
| 1803 'CaseSensitive' : True, | |
| 1804 'Query' : { 'PatientName' : '*NE*' }}) | |
| 1805 self.assertEqual(4, len(a)) | |
| 1806 | |
| 1807 a = DoPost(_REMOTE, '/tools/find', { 'Level' : 'Patient', 'Query' : { }}) | |
| 1808 self.assertEqual(2, len(a)) | |
| 1809 | |
| 1810 a = DoPost(_REMOTE, '/tools/find', { 'Level' : 'Study', 'Query' : { }}) | |
| 1811 self.assertEqual(2, len(a)) | |
| 1812 | |
| 1813 a = DoPost(_REMOTE, '/tools/find', { 'Level' : 'Series', 'Query' : { }}) | |
| 1814 self.assertEqual(4, len(a)) | |
| 1815 | |
| 1816 a = DoPost(_REMOTE, '/tools/find', { 'Level' : 'Instance', 'Query' : { }}) | |
| 1817 self.assertEqual(8, len(a)) | |
| 1818 | |
|
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1819 a = DoPost(_REMOTE, '/tools/find', { 'Level' : 'Study', |
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1820 'Expand' : True, |
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1821 'Query' : { 'StudyDate' : '20061201-20061201' }}) |
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1822 self.assertEqual(1, len(a)) |
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1823 self.assertEqual('BRAINIX', a[0]['PatientMainDicomTags']['PatientName']) |
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1824 |
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1825 a = DoPost(_REMOTE, '/tools/find', { 'Level' : 'Study', |
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1826 'Expand' : True, |
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1827 'Query' : { 'StudyDate' : '20061201-20091201' }}) |
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1828 self.assertEqual(2, len(a)) |
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1829 for i in range(2): |
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1830 self.assertTrue(a[i]['PatientMainDicomTags']['PatientName'] in ['BRAINIX', 'KNEE']) |
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1832 a = DoPost(_REMOTE, '/tools/find', { 'Level' : 'Study', |
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1833 'Query' : { 'StudyDate' : '20061202-20061202' }}) |
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1834 self.assertEqual(0, len(a)) |
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1836 a = DoPost(_REMOTE, '/tools/find', { 'Level' : 'Study', |
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1837 'Expand' : True, |
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1838 'Query' : { 'StudyDate' : '-20061201' }}) |
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1839 self.assertEqual(1, len(a)) |
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1840 self.assertEqual('BRAINIX', a[0]['PatientMainDicomTags']['PatientName']) |
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1841 |
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1842 a = DoPost(_REMOTE, '/tools/find', { 'Level' : 'Study', |
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1843 'Expand' : True, |
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1844 'Query' : { 'StudyDate' : '-20051201' }}) |
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1845 self.assertEqual(0, len(a)) |
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1846 |
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1847 a = DoPost(_REMOTE, '/tools/find', { 'Level' : 'Study', |
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1848 'Expand' : True, |
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1849 'Query' : { 'StudyDate' : '20061201-' }}) |
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1850 self.assertEqual(2, len(a)) |
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1851 for i in range(2): |
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1852 self.assertTrue(a[i]['PatientMainDicomTags']['PatientName'] in ['BRAINIX', 'KNEE']) |
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1853 |
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1854 a = DoPost(_REMOTE, '/tools/find', { 'Level' : 'Study', |
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1855 'Expand' : True, |
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1856 'Query' : { 'StudyDate' : '20061202-' }}) |
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1857 self.assertEqual(1, len(a)) |
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1858 self.assertEqual('KNEE', a[0]['PatientMainDicomTags']['PatientName']) |
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1859 |
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1860 a = DoPost(_REMOTE, '/tools/find', { 'Level' : 'Study', |
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1861 'Expand' : True, |
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1862 'Query' : { 'StudyDate' : '20080819-' }}) |
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1863 self.assertEqual(1, len(a)) |
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1864 self.assertEqual('KNEE', a[0]['PatientMainDicomTags']['PatientName']) |
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1865 |
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1866 a = DoPost(_REMOTE, '/tools/find', { 'Level' : 'Study', |
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1867 'Expand' : True, |
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1868 'Query' : { 'StudyDate' : '20080820-' }}) |
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1869 self.assertEqual(0, len(a)) |
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1870 |
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1871 |
| 14 | 1872 |
| 1873 def test_rest_query_retrieve(self): | |
| 1874 self.assertEqual(0, len(DoGet(_REMOTE, '/patients'))) | |
| 1875 | |
| 1876 # Upload 8 instances | |
| 1877 for i in range(2): | |
| 1878 UploadInstance(_REMOTE, 'Brainix/Flair/IM-0001-000%d.dcm' % (i + 1)) | |
| 1879 UploadInstance(_REMOTE, 'Brainix/Epi/IM-0001-000%d.dcm' % (i + 1)) | |
| 1880 UploadInstance(_REMOTE, 'Knee/T1/IM-0001-000%d.dcm' % (i + 1)) | |
| 1881 UploadInstance(_REMOTE, 'Knee/T2/IM-0001-000%d.dcm' % (i + 1)) | |
| 1882 | |
| 1883 self.assertEqual(2, len(DoGet(_REMOTE, '/patients'))) | |
| 1884 for p in DoGet(_REMOTE, '/patients'): | |
| 1885 DoPost(_REMOTE, '/modalities/orthanctest/store', p) | |
| 1886 DoDelete(_REMOTE, '/patients/%s' % p) | |
| 1887 | |
| 1888 for q in DoGet(_REMOTE, '/queries'): | |
| 1889 DoDelete(_REMOTE, '/queries/%s' % q) | |
| 1890 | |
| 1891 self.assertEqual(0, len(DoGet(_REMOTE, '/patients'))) | |
| 1892 self.assertEqual(0, len(DoGet(_REMOTE, '/queries'))) | |
| 1893 a = DoPost(_REMOTE, '/modalities/orthanctest/query', { 'Level' : 'Series', | |
| 27 | 1894 'Query' : { |
| 1895 'PatientName' : '*NE*', | |
| 1896 'StudyDate' : '*', | |
| 1897 }})['ID'] | |
| 14 | 1898 self.assertEqual(1, len(DoGet(_REMOTE, '/queries'))) |
| 1899 | |
| 1900 b = DoGet(_REMOTE, '/queries/%s' % a) | |
| 1901 self.assertTrue('answers' in b) | |
| 1902 self.assertTrue('level' in b) | |
| 1903 self.assertTrue('modality' in b) | |
| 1904 self.assertTrue('query' in b) | |
| 1905 self.assertTrue('retrieve' in b) | |
| 1906 self.assertEqual('Series', DoGet(_REMOTE, '/queries/%s/level' % a)) | |
| 1907 self.assertEqual('orthanctest', DoGet(_REMOTE, '/queries/%s/modality' % a)) | |
| 1908 | |
| 1909 q = DoGet(_REMOTE, '/queries/%s/query?simplify' % a) | |
| 27 | 1910 self.assertEqual(2, len(q)) |
| 14 | 1911 self.assertTrue('PatientName' in q) |
| 27 | 1912 self.assertTrue('StudyDate' in q) |
| 14 | 1913 self.assertEqual('*NE*', q['PatientName']) |
| 27 | 1914 self.assertEqual('*', q['StudyDate']) |
| 14 | 1915 |
| 1916 self.assertEqual(2, len(DoGet(_REMOTE, '/queries/%s/answers' % a))) | |
| 1917 | |
| 1918 s = DoGet(_REMOTE, '/queries/%s/answers/0' % a) | |
| 1919 self.assertTrue('content' in s) | |
| 1920 self.assertTrue('retrieve' in s) | |
| 1921 | |
| 1922 s = DoGet(_REMOTE, '/queries/%s/answers/0/content?simplify' % a) | |
| 1923 self.assertEqual('887', s['PatientID']) | |
| 1924 self.assertEqual('2.16.840.1.113669.632.20.121711.10000160881', s['StudyInstanceUID']) | |
| 1925 | |
| 1926 self.assertEqual(0, len(DoGet(_REMOTE, '/patients'))) | |
| 1927 DoPost(_REMOTE, '/queries/%s/answers/0/retrieve' % a, 'ORTHANC') | |
| 1928 self.assertEqual(1, len(DoGet(_REMOTE, '/patients'))) | |
| 1929 self.assertEqual(1, len(DoGet(_REMOTE, '/studies'))) | |
| 1930 self.assertEqual(1, len(DoGet(_REMOTE, '/series'))) | |
| 1931 self.assertEqual(2, len(DoGet(_REMOTE, '/instances'))) | |
| 1932 | |
| 112 | 1933 DoPost(_REMOTE, '/queries/%s/answers/1/retrieve' % a, 'ORTHANC', 'application/json') # make sure the issue #36 is fixed (query/retrieve Rest API: /retrieve route shall accept application/json content type) |
| 14 | 1934 self.assertEqual(1, len(DoGet(_REMOTE, '/patients'))) |
| 1935 self.assertEqual(1, len(DoGet(_REMOTE, '/studies'))) | |
| 1936 self.assertEqual(2, len(DoGet(_REMOTE, '/series'))) | |
| 1937 self.assertEqual(4, len(DoGet(_REMOTE, '/instances'))) | |
| 1938 | |
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1939 # New in Orthanc 1.4.3 |
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1940 s = DoGet(_REMOTE, '/queries/%s/answers?expand&simplify' % a) |
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1941 self.assertEqual(2, len(s)) |
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1942 for i in range(2): |
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1943 self.assertEqual('SERIES', s[i]['QueryRetrieveLevel']) |
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1944 self.assertEqual('887', s[i]['PatientID']) |
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1945 self.assertEqual('2.16.840.1.113669.632.20.121711.10000160881', s[i]['StudyInstanceUID']) |
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1946 |
| 14 | 1947 DoDelete(_REMOTE, '/queries/%s' % a) |
| 1948 self.assertEqual(0, len(DoGet(_REMOTE, '/queries'))) | |
| 1949 | |
| 1950 | |
| 1951 def test_parent(self): | |
| 1952 u = UploadInstance(_REMOTE, 'DummyCT.dcm')['ID'] | |
| 1953 patient = '6816cb19-844d5aee-85245eba-28e841e6-2414fae2' | |
| 1954 study = 'b9c08539-26f93bde-c81ab0d7-bffaf2cb-a4d0bdd0' | |
| 1955 series = 'f2635388-f01d497a-15f7c06b-ad7dba06-c4c599fe' | |
| 1956 instance = '66a662ce-7430e543-bad44d47-0dc5a943-ec7a538d' | |
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1957 self.assertEqual(instance, u) |
| 14 | 1958 |
| 1959 a = DoGet(_REMOTE, '/studies/%s/patient' % study) | |
| 1960 self.assertEqual('Patient', a['Type']) | |
| 1961 self.assertEqual(patient, a['ID']) | |
| 1962 | |
| 1963 a = DoGet(_REMOTE, '/series/%s/patient' % series) | |
| 1964 self.assertEqual('Patient', a['Type']) | |
| 1965 self.assertEqual(patient, a['ID']) | |
| 1966 | |
| 1967 a = DoGet(_REMOTE, '/series/%s/study' % series) | |
| 1968 self.assertEqual('Study', a['Type']) | |
| 1969 self.assertEqual(study, a['ID']) | |
| 1970 | |
| 1971 a = DoGet(_REMOTE, '/instances/%s/patient' % instance) | |
| 1972 self.assertEqual('Patient', a['Type']) | |
| 1973 self.assertEqual(patient, a['ID']) | |
| 1974 | |
| 1975 a = DoGet(_REMOTE, '/instances/%s/study' % instance) | |
| 1976 self.assertEqual('Study', a['Type']) | |
| 1977 self.assertEqual(study, a['ID']) | |
| 1978 | |
| 1979 a = DoGet(_REMOTE, '/instances/%s/series' % instance) | |
| 1980 self.assertEqual('Series', a['Type']) | |
| 1981 self.assertEqual(series, a['ID']) | |
| 1982 | |
| 1983 | |
| 1984 def test_shanon(self): | |
| 1985 def Anonymize(instance, replacements = {}): | |
| 119 | 1986 return DoPost(_REMOTE, '/instances/%s/anonymize' % instance, { |
| 1987 'Replace' : replacements, | |
| 1988 'Force' : True, | |
| 1989 }, 'application/json') | |
| 14 | 1990 |
| 1991 self.assertEqual(0, len(DoGet(_REMOTE, '/instances'))) | |
| 1992 u = UploadInstance(_REMOTE, 'DummyCT.dcm')['ID'] | |
| 1993 self.assertEqual(1, len(DoGet(_REMOTE, '/instances'))) | |
| 1994 | |
| 1995 tags = [ 'PatientID', 'StudyInstanceUID', 'SeriesInstanceUID', 'SOPInstanceUID', 'DeidentificationMethod' ] | |
| 1996 ids = [ 'ozp00SjY2xG', | |
| 1997 '1.2.840.113619.2.176.2025.1499492.7391.1171285944.390', | |
| 1998 '1.2.840.113619.2.176.2025.1499492.7391.1171285944.394', | |
| 1999 '1.2.840.113619.2.176.2025.1499492.7040.1171286242.109' ] | |
| 2000 | |
| 2001 a = ExtractDicomTags(Anonymize(u), tags) | |
| 2002 for i in range(4): | |
| 2003 self.assertNotEqual(ids[i], a[i]) | |
| 2004 self.assertTrue(a[4].startswith('Orthanc')) | |
| 2005 | |
| 2006 a = ExtractDicomTags(Anonymize(u, { 'PatientName' : 'toto' }), tags) | |
| 2007 for i in range(4): | |
| 2008 self.assertNotEqual(ids[i], a[i]) | |
| 2009 self.assertFalse(a[4].startswith('Orthanc')) | |
| 2010 | |
| 2011 a = ExtractDicomTags(Anonymize(u, { 'SOPInstanceUID' : 'instance' }), tags) | |
| 2012 self.assertEqual('instance', a[3]) | |
| 2013 self.assertFalse(a[4].startswith('Orthanc')) | |
| 2014 | |
| 2015 a = ExtractDicomTags(Anonymize(u, { 'SeriesInstanceUID' : 'series' }), tags) | |
| 2016 self.assertEqual('series', a[2]) | |
| 2017 self.assertFalse(a[4].startswith('Orthanc')) | |
| 2018 | |
| 2019 a = ExtractDicomTags(Anonymize(u, { 'StudyInstanceUID' : 'study' }), tags) | |
| 2020 self.assertEqual('study', a[1]) | |
| 2021 self.assertFalse(a[4].startswith('Orthanc')) | |
| 2022 | |
| 2023 a = ExtractDicomTags(Anonymize(u, { 'PatientID' : 'patient' }), tags) | |
| 2024 self.assertEqual('patient', a[0]) | |
| 2025 self.assertFalse(a[4].startswith('Orthanc')) | |
| 2026 | |
| 2027 a = ExtractDicomTags(Anonymize(u, { 'PatientID' : 'patient', | |
| 2028 'StudyInstanceUID' : 'study', | |
| 2029 'SeriesInstanceUID' : 'series', | |
| 2030 'SOPInstanceUID' : 'instance' }), tags) | |
| 2031 self.assertEqual('patient', a[0]) | |
| 2032 self.assertFalse(a[4].startswith('Orthanc')) | |
| 2033 | |
| 2034 self.assertEqual(1, len(DoGet(_REMOTE, '/instances'))) | |
| 2035 | |
| 2036 | |
| 2037 def test_shanon_2(self): | |
| 2038 def Modify(instance, replacements = {}): | |
| 119 | 2039 return DoPost(_REMOTE, '/instances/%s/modify' % instance, { |
| 2040 'Replace' : replacements, | |
| 2041 'Force': True, | |
| 2042 }, 'application/json') | |
| 14 | 2043 |
| 2044 self.assertEqual(0, len(DoGet(_REMOTE, '/instances'))) | |
| 2045 u = UploadInstance(_REMOTE, 'DummyCT.dcm')['ID'] | |
| 2046 self.assertEqual(1, len(DoGet(_REMOTE, '/instances'))) | |
| 2047 | |
| 2048 tags = [ 'PatientID', 'StudyInstanceUID', 'SeriesInstanceUID', 'SOPInstanceUID', 'DeidentificationMethod' ] | |
| 2049 ids = [ 'ozp00SjY2xG', | |
| 2050 '1.2.840.113619.2.176.2025.1499492.7391.1171285944.390', | |
| 2051 '1.2.840.113619.2.176.2025.1499492.7391.1171285944.394', | |
| 2052 '1.2.840.113619.2.176.2025.1499492.7040.1171286242.109' ] | |
| 2053 | |
| 2054 a = ExtractDicomTags(Modify(u), tags) | |
| 2055 self.assertEqual(ids[0], a[0]) | |
| 2056 self.assertEqual(ids[1], a[1]) | |
| 2057 self.assertEqual(ids[2], a[2]) | |
| 2058 self.assertNotEqual(ids[3], a[3]) | |
| 2059 self.assertEqual(0, len(a[4])) | |
| 2060 | |
| 2061 a = ExtractDicomTags(Modify(u, { 'SOPInstanceUID' : 'instance' }), tags) | |
| 2062 self.assertEqual(ids[0], a[0]) | |
| 2063 self.assertEqual(ids[1], a[1]) | |
| 2064 self.assertEqual(ids[2], a[2]) | |
| 2065 self.assertEqual('instance', a[3]) | |
| 2066 | |
| 2067 a = ExtractDicomTags(Modify(u, { 'SeriesInstanceUID' : 'series' }), tags) | |
| 2068 self.assertEqual(ids[0], a[0]) | |
| 2069 self.assertEqual(ids[1], a[1]) | |
| 2070 self.assertEqual('series', a[2]) | |
| 2071 self.assertNotEqual(ids[3], a[3]) | |
| 2072 | |
| 2073 a = ExtractDicomTags(Modify(u, { 'StudyInstanceUID' : 'study' }), tags) | |
| 2074 self.assertEqual(ids[0], a[0]) | |
| 2075 self.assertEqual('study', a[1]) | |
| 2076 self.assertNotEqual(ids[2], a[2]) | |
| 2077 self.assertNotEqual(ids[3], a[3]) | |
| 2078 | |
| 2079 a = ExtractDicomTags(Modify(u, { 'PatientID' : 'patient' }), tags) | |
| 2080 self.assertEqual('patient', a[0]) | |
| 2081 self.assertNotEqual(ids[1], a[1]) | |
| 2082 self.assertNotEqual(ids[2], a[2]) | |
| 2083 self.assertNotEqual(ids[3], a[3]) | |
| 2084 | |
| 2085 a = ExtractDicomTags(Modify(u, { 'PatientID' : 'patient', | |
| 2086 'StudyInstanceUID' : 'study', | |
| 2087 'SeriesInstanceUID' : 'series', | |
| 2088 'SOPInstanceUID' : 'instance' }), tags) | |
| 2089 self.assertEqual('patient', a[0]) | |
| 2090 self.assertEqual('study', a[1]) | |
| 2091 self.assertEqual('series', a[2]) | |
| 2092 self.assertEqual('instance', a[3]) | |
| 2093 | |
| 2094 self.assertEqual(1, len(DoGet(_REMOTE, '/instances'))) | |
| 2095 | |
| 2096 | |
| 2097 def test_instances_tags(self): | |
| 2098 a = UploadInstance(_REMOTE, 'Knee/T1/IM-0001-0001.dcm')['ID'] | |
| 2099 b = UploadInstance(_REMOTE, 'Knee/T2/IM-0001-0001.dcm')['ID'] | |
| 2100 #a = UploadInstance(_REMOTE, 'Cardiac/MR.X.1.2.276.0.7230010.3.1.4.2831157719.2256.1336386937.676343')['ID'] | |
| 2101 #b = UploadInstance(_REMOTE, 'Cardiac/MR.X.1.2.276.0.7230010.3.1.4.2831157719.2256.1336386925.676329')['ID'] | |
| 2102 | |
| 2103 i = DoGet(_REMOTE, '/patients/%s/instances-tags?simplify' % DoGet(_REMOTE, '/patients')[0]) | |
| 2104 self.assertEqual(2, len(i)) | |
| 2105 self.assertEqual('887', i[i.keys()[0]]['PatientID']) | |
| 2106 self.assertEqual('887', i[i.keys()[1]]['PatientID']) | |
| 2107 | |
| 2108 i = DoGet(_REMOTE, '/patients/%s/instances-tags?simplify' % DoGet(_REMOTE, '/studies')[0]) | |
| 2109 self.assertEqual(2, len(i)) | |
| 2110 self.assertEqual('887', i[i.keys()[0]]['PatientID']) | |
| 2111 self.assertEqual('887', i[i.keys()[1]]['PatientID']) | |
| 2112 | |
| 2113 self.assertEqual(2, len(DoGet(_REMOTE, '/series'))) | |
| 2114 i = DoGet(_REMOTE, '/patients/%s/instances-tags?simplify' % DoGet(_REMOTE, '/series')[0]) | |
| 2115 self.assertEqual(1, len(i)) | |
| 2116 self.assertEqual('887', i[i.keys()[0]]['PatientID']) | |
| 2117 | |
| 2118 i = DoGet(_REMOTE, '/patients/%s/instances-tags?simplify' % DoGet(_REMOTE, '/series')[1]) | |
| 2119 self.assertEqual(1, len(i)) | |
| 2120 self.assertEqual('887', i[i.keys()[0]]['PatientID']) | |
| 2121 | |
|
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2122 i = DoGet(_REMOTE, '/patients/%s/instances-tags?short' % DoGet(_REMOTE, '/series')[1]) |
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2123 self.assertEqual(1, len(i)) |
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2124 self.assertEqual('887', i[i.keys()[0]]['0010,0020']) |
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2125 |
| 14 | 2126 |
| 2127 def test_lookup(self): | |
| 2128 a = DoPost(_REMOTE, '/tools/lookup', 'ozp00SjY2xG') | |
| 2129 self.assertEqual(0, len(a)) | |
| 2130 | |
| 2131 UploadInstance(_REMOTE, 'DummyCT.dcm') | |
| 2132 | |
| 2133 a = DoPost(_REMOTE, '/tools/lookup', 'ozp00SjY2xG') | |
| 2134 self.assertEqual(1, len(a)) | |
| 2135 self.assertEqual('Patient', a[0]['Type']) | |
| 2136 self.assertEqual('6816cb19-844d5aee-85245eba-28e841e6-2414fae2', a[0]['ID']) | |
| 2137 self.assertEqual('/patients/%s' % a[0]['ID'], a[0]['Path']) | |
| 2138 | |
| 2139 a = DoPost(_REMOTE, '/tools/lookup', '1.2.840.113619.2.176.2025.1499492.7391.1171285944.390') | |
| 2140 self.assertEqual(1, len(a)) | |
| 2141 self.assertEqual('Study', a[0]['Type']) | |
| 2142 self.assertEqual('b9c08539-26f93bde-c81ab0d7-bffaf2cb-a4d0bdd0', a[0]['ID']) | |
| 2143 self.assertEqual('/studies/%s' % a[0]['ID'], a[0]['Path']) | |
| 2144 | |
| 2145 a = DoPost(_REMOTE, '/tools/lookup', '1.2.840.113619.2.176.2025.1499492.7391.1171285944.394') | |
| 2146 self.assertEqual(1, len(a)) | |
| 2147 self.assertEqual('Series', a[0]['Type']) | |
| 2148 self.assertEqual('f2635388-f01d497a-15f7c06b-ad7dba06-c4c599fe', a[0]['ID']) | |
| 2149 self.assertEqual('/series/%s' % a[0]['ID'], a[0]['Path']) | |
| 2150 | |
| 2151 a = DoPost(_REMOTE, '/tools/lookup', '1.2.840.113619.2.176.2025.1499492.7040.1171286242.109') | |
| 2152 self.assertEqual(1, len(a)) | |
| 2153 self.assertEqual('Instance', a[0]['Type']) | |
| 2154 self.assertEqual('66a662ce-7430e543-bad44d47-0dc5a943-ec7a538d', a[0]['ID']) | |
| 2155 self.assertEqual('/instances/%s' % a[0]['ID'], a[0]['Path']) | |
| 2156 | |
| 2157 DropOrthanc(_REMOTE) | |
| 2158 a = DoPost(_REMOTE, '/tools/lookup', '3113719P') | |
| 2159 self.assertEqual(0, len(a)) | |
| 2160 | |
| 15 | 2161 |
| 2162 def test_autorouting(self): | |
| 2163 knee1 = 'Knee/T1/IM-0001-0001.dcm' | |
| 2164 knee2 = 'Knee/T2/IM-0001-0002.dcm' | |
| 2165 other = 'Brainix/Flair/IM-0001-0001.dcm' | |
| 2166 | |
| 2167 # Check that this version is >= 0.8.0 | |
| 2168 self.assertTrue(IsDefinedInLua(_REMOTE, '_InitializeJob')) | |
| 2169 self.assertTrue('orthanctest' in DoGet(_REMOTE, '/modalities')) | |
| 2170 | |
| 2171 UploadInstance(_REMOTE, knee1) | |
| 2172 self.assertEqual(0, len(DoGet(_LOCAL, '/instances'))) | |
| 2173 | |
| 2174 DropOrthanc(_REMOTE) | |
| 2175 DropOrthanc(_LOCAL) | |
| 174 | 2176 InstallLuaScriptFromPath(_REMOTE, 'Lua/Autorouting.lua') |
| 15 | 2177 UploadInstance(_REMOTE, knee1) |
| 2178 UploadInstance(_REMOTE, knee2) | |
| 2179 UploadInstance(_REMOTE, other) | |
| 2180 WaitEmpty(_REMOTE) | |
| 174 | 2181 UninstallLuaCallbacks(_REMOTE) |
| 15 | 2182 self.assertEqual(3, len(DoGet(_LOCAL, '/instances'))) |
| 2183 | |
| 2184 DropOrthanc(_REMOTE) | |
| 2185 DropOrthanc(_LOCAL) | |
| 174 | 2186 InstallLuaScriptFromPath(_REMOTE, 'Lua/AutoroutingConditional.lua') |
| 15 | 2187 UploadInstance(_REMOTE, knee1) |
| 2188 UploadInstance(_REMOTE, knee2) | |
| 2189 UploadInstance(_REMOTE, other) | |
| 2190 WaitEmpty(_REMOTE) | |
| 174 | 2191 UninstallLuaCallbacks(_REMOTE) |
| 15 | 2192 self.assertEqual(2, len(DoGet(_LOCAL, '/instances'))) |
| 2193 | |
| 2194 DropOrthanc(_REMOTE) | |
| 2195 DropOrthanc(_LOCAL) | |
| 174 | 2196 InstallLuaScriptFromPath(_REMOTE, 'Lua/AutoroutingModification.lua') |
| 15 | 2197 UploadInstance(_REMOTE, knee1) |
| 2198 WaitEmpty(_REMOTE) | |
| 174 | 2199 UninstallLuaCallbacks(_REMOTE) |
| 15 | 2200 i = DoGet(_LOCAL, '/instances') |
| 2201 self.assertEqual(1, len(i)) | |
| 2202 | |
| 2203 with tempfile.NamedTemporaryFile(delete = True) as f: | |
| 2204 f.write(DoGet(_LOCAL, '/instances/%s/file' % i[0])) | |
| 2205 f.flush() | |
| 45 | 2206 routed = subprocess.check_output([ FindExecutable('dcm2xml'), f.name ]) |
| 15 | 2207 self.assertEqual('My Medical Device', re.search('"StationName">(.*?)<', routed).group(1).strip()) |
| 2208 self.assertEqual(None, re.search('"MilitaryRank"', routed)) | |
| 2209 self.assertEqual(None, re.search('"0051,0010"', routed)) # A private tag | |
| 17 | 2210 |
| 2211 | |
| 2212 def test_storescu_rf(self): | |
| 2213 i = UploadInstance(_REMOTE, 'KarstenHilbertRF.dcm')['ID'] | |
| 2214 self.assertEqual(0, len(DoGet(_LOCAL, '/instances'))) | |
| 2215 j = DoPost(_REMOTE, '/modalities/orthanctest/store', str(i), 'text/plain') | |
| 2216 self.assertEqual(1, len(DoGet(_LOCAL, '/instances'))) | |
| 18 | 2217 |
| 2218 | |
| 2219 def test_anonymize_instance(self): | |
| 2220 def AnonymizeAndUpload(instanceId, parameters): | |
| 2221 return DoPost(_REMOTE, '/instances', DoPost(_REMOTE, '/instances/%s/anonymize' % instanceId, parameters, | |
| 2222 'application/json'), 'application/dicom')['ID'] | |
| 2223 | |
| 2224 def ModifyAndUpload(instanceId, parameters): | |
| 2225 return DoPost(_REMOTE, '/instances', DoPost(_REMOTE, '/instances/%s/modify' % instanceId, parameters, | |
| 2226 'application/json'), 'application/dicom')['ID'] | |
| 2227 | |
| 2228 a = UploadInstance(_REMOTE, 'PrivateMDNTags.dcm')['ID'] | |
| 2229 s1 = DoGet(_REMOTE, '/instances/%s/content/PatientName' % a) | |
| 2230 s2 = DoGet(_REMOTE, '/instances/%s/content/00e1-10c2' % a) # Some private tag | |
| 2231 s3 = DoGet(_REMOTE, '/instances/%s/content/StudyDescription' % a) | |
| 2232 s4 = DoGet(_REMOTE, '/instances/%s/content/SeriesDescription' % a) | |
| 2233 s5 = DoGet(_REMOTE, '/instances/%s/content/InstitutionName' % a) | |
| 2234 | |
| 2235 b = AnonymizeAndUpload(a, '{}') | |
| 2236 self.assertNotEqual(s1, DoGet(_REMOTE, '/instances/%s/content/PatientName' % b)) | |
| 2237 self.assertRaises(Exception, lambda: DoGet(_REMOTE, '/instances/%s/content/00e1-10c2' % b)) | |
| 2238 | |
| 2239 # Keep private tag (only OK since Orthanc 0.8.0) | |
| 2240 b = AnonymizeAndUpload(a, '{"Keep":["00e1-10c2"]}') | |
| 2241 self.assertNotEqual(s1, DoGet(_REMOTE, '/instances/%s/content/PatientName' % b)) | |
| 2242 self.assertEqual(s2, DoGet(_REMOTE, '/instances/%s/content/00e1-10c2' % b)) | |
| 2243 | |
| 2244 b = AnonymizeAndUpload(a, '{"Keep":["00e1,10c2","PatientName"]}') | |
| 2245 self.assertEqual(s1, DoGet(_REMOTE, '/instances/%s/content/PatientName' % b)) | |
| 2246 self.assertEqual(s2, DoGet(_REMOTE, '/instances/%s/content/00e1-10c2' % b)) | |
| 2247 | |
| 2248 b = AnonymizeAndUpload(a, '{"Keep":["PatientName"],"Replace":{"00e1,10c2":"Hello"}}') | |
| 2249 self.assertEqual(s1, DoGet(_REMOTE, '/instances/%s/content/PatientName' % b)) | |
| 2250 self.assertTrue(DoGet(_REMOTE, '/instances/%s/content/00e1-10c2' % b).startswith('Hello')) | |
| 2251 | |
| 2252 # Examples from the Wiki | |
|
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2253 b = AnonymizeAndUpload(a, '{"Replace":{"PatientName":"hello","0010-0020":"world"},"Keep":["StudyDescription", "SeriesDescription"],"KeepPrivateTags": true,"Force":true}') |
| 18 | 2254 self.assertEqual('hello', DoGet(_REMOTE, '/instances/%s/content/0010-0010' % b).strip()) |
| 2255 self.assertEqual('world', DoGet(_REMOTE, '/instances/%s/content/PatientID' % b).strip()) | |
| 2256 self.assertEqual(s3, DoGet(_REMOTE, '/instances/%s/content/0008,1030' % b)) | |
| 2257 self.assertEqual(s4, DoGet(_REMOTE, '/instances/%s/content/0008,103e' % b)) | |
| 2258 self.assertEqual(s4, DoGet(_REMOTE, '/instances/%s/content/0008-103E' % b)) | |
| 2259 self.assertEqual(s2, DoGet(_REMOTE, '/instances/%s/content/00e1-10c2' % b)) | |
| 2260 DoGet(_REMOTE, '/instances/%s/content/InstitutionName' % a) | |
| 2261 self.assertRaises(Exception, lambda: DoGet(_REMOTE, '/instances/%s/content/InstitutionName' % b)) | |
| 2262 | |
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2263 b = ModifyAndUpload(a, '{"Replace":{"PatientName":"hello","PatientID":"world"},"Remove":["InstitutionName"],"RemovePrivateTags": true,"Force":true}') |
| 18 | 2264 self.assertEqual('hello', DoGet(_REMOTE, '/instances/%s/content/0010-0010' % b).strip()) |
| 2265 self.assertEqual('world', DoGet(_REMOTE, '/instances/%s/content/PatientID' % b).strip()) | |
| 2266 self.assertEqual(s3, DoGet(_REMOTE, '/instances/%s/content/0008,1030' % b)) | |
| 2267 self.assertEqual(s4, DoGet(_REMOTE, '/instances/%s/content/0008,103e' % b)) | |
| 2268 self.assertRaises(Exception, lambda: DoGet(_REMOTE, '/instances/%s/content/00e1-10c2' % b)) | |
| 2269 self.assertRaises(Exception, lambda: DoGet(_REMOTE, '/instances/%s/content/InstitutionName' % b)) | |
| 2270 | |
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2271 b = ModifyAndUpload(a, '{"Replace":{"PatientName":"hello","PatientID":"world"},"Force":true}') |
| 18 | 2272 self.assertEqual('hello', DoGet(_REMOTE, '/instances/%s/content/0010-0010' % b).strip()) |
| 2273 self.assertEqual('world', DoGet(_REMOTE, '/instances/%s/content/PatientID' % b).strip()) | |
| 2274 self.assertEqual(s2, DoGet(_REMOTE, '/instances/%s/content/00e1,10c2' % b)) | |
| 2275 self.assertEqual(s3, DoGet(_REMOTE, '/instances/%s/content/0008,1030' % b)) | |
| 2276 self.assertEqual(s4, DoGet(_REMOTE, '/instances/%s/content/0008-103E' % b)) | |
| 2277 self.assertEqual(s5, DoGet(_REMOTE, '/instances/%s/content/InstitutionName' % b)) | |
| 2278 | |
| 2279 | |
| 2280 # Test modify non-existing | |
| 2281 i = DoPost(_REMOTE, '/tools/create-dicom', | |
| 2282 json.dumps({ | |
| 2283 'PatientName' : 'Jodogne', | |
| 2284 'Modality' : 'CT', | |
| 2285 }))['ID'] | |
| 2286 | |
| 2287 self.assertEqual('Jodogne', DoGet(_REMOTE, '/instances/%s/content/PatientName' % i).strip()) | |
| 2288 self.assertRaises(Exception, lambda: DoGet(_REMOTE, '/instances/%s/content/StudyDescription' % i)) | |
| 2289 self.assertEqual('CT', DoGet(_REMOTE, '/instances/%s/content/Modality' % i).strip()) | |
| 2290 | |
| 2291 b = ModifyAndUpload(i, '{"Replace":{"StudyDescription":"hello","Modality":"world"}}') | |
| 2292 self.assertEqual('Jodogne', DoGet(_REMOTE, '/instances/%s/content/PatientName' % b).strip()) | |
| 2293 self.assertEqual('hello', DoGet(_REMOTE, '/instances/%s/content/StudyDescription' % b).strip()) | |
| 2294 self.assertEqual('world', DoGet(_REMOTE, '/instances/%s/content/Modality' % b).strip()) | |
| 2295 | |
|
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2296 |
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2297 def test_incoming_jpeg(self): |
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2298 def storescu(image, acceptUnknownSopClassUid): |
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2299 if acceptUnknownSopClassUid: |
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2300 tmp = [ '-xf', GetDatabasePath('UnknownSopClassUid.cfg'), 'Default' ] |
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2301 else: |
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2302 tmp = [ '-xs' ] |
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2303 |
|
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2304 with open(os.devnull, 'w') as FNULL: |
|
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2305 subprocess.check_call([ FindExecutable('storescu') ] + tmp + |
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2306 [ _REMOTE['Server'], str(_REMOTE['DicomPort']), |
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2307 GetDatabasePath(image) ], |
|
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2308 stderr = FNULL) |
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2309 |
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2310 self.assertEqual(0, len(DoGet(_REMOTE, '/patients'))) |
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2311 |
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2312 if IsOrthancVersionAbove(_REMOTE, 1, 9, 0): |
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2313 a = DoPut(_REMOTE, '/tools/accepted-transfer-syntaxes', [ |
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2314 '1.2.840.10008.1.2', '1.2.840.10008.1.2.1', '1.2.840.10008.1.2.2' |
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2315 ]) |
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2316 self.assertTrue('1.2.840.10008.1.2' in a) |
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2317 self.assertTrue('1.2.840.10008.1.2.1' in a) |
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2318 self.assertTrue('1.2.840.10008.1.2.2' in a) |
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2319 self.assertEqual(3, len(a)) |
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2320 self.assertRaises(Exception, lambda: DoPut(_REMOTE, '/tools/unknown-sop-class-accepted', 'nope')) |
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2321 DoPut(_REMOTE, '/tools/unknown-sop-class-accepted', '0') |
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2322 self.assertEqual(0, DoGet(_REMOTE, '/tools/unknown-sop-class-accepted')) |
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2323 else: |
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2324 InstallLuaScriptFromPath(_REMOTE, 'Lua/TransferSyntaxDisable.lua') |
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2325 |
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2326 self.assertRaises(Exception, lambda: storescu('Knix/Loc/IM-0001-0001.dcm', False)) |
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2327 self.assertRaises(Exception, lambda: storescu('UnknownSopClassUid.dcm', True)) |
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2328 self.assertEqual(0, len(DoGet(_REMOTE, '/patients'))) |
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2329 |
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2330 if IsOrthancVersionAbove(_REMOTE, 1, 9, 0): |
| 374 | 2331 a = DoPut(_REMOTE, '/tools/accepted-transfer-syntaxes', '*', 'text/plain') |
|
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2332 self.assertGreaterEqual(42, len(a)) |
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2333 DoPut(_REMOTE, '/tools/unknown-sop-class-accepted', 'true') |
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2334 self.assertEqual(1, DoGet(_REMOTE, '/tools/unknown-sop-class-accepted')) |
|
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372
diff
changeset
|
2335 else: |
|
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parents:
372
diff
changeset
|
2336 InstallLuaScriptFromPath(_REMOTE, 'Lua/TransferSyntaxEnable.lua') |
|
f673153f27a4
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372
diff
changeset
|
2337 |
|
62
f9c4ce95756f
removal of useless information
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
61
diff
changeset
|
2338 DoPost(_REMOTE, '/tools/execute-script', "print('All special transfer syntaxes are now accepted')") |
|
61
967d44407308
test UnknownSopClassAccepted option
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
60
diff
changeset
|
2339 storescu('Knix/Loc/IM-0001-0001.dcm', False) |
|
967d44407308
test UnknownSopClassAccepted option
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
60
diff
changeset
|
2340 storescu('UnknownSopClassUid.dcm', True) |
|
967d44407308
test UnknownSopClassAccepted option
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
60
diff
changeset
|
2341 self.assertEqual(2, len(DoGet(_REMOTE, '/patients'))) |
|
21
2a29bcff60a7
tests of image decoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
18
diff
changeset
|
2342 |
|
2a29bcff60a7
tests of image decoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
18
diff
changeset
|
2343 |
|
2a29bcff60a7
tests of image decoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
18
diff
changeset
|
2344 def test_storescu_jpeg(self): |
|
2a29bcff60a7
tests of image decoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
18
diff
changeset
|
2345 self.assertEqual(0, len(DoGet(_REMOTE, '/exports')['Exports'])) |
|
2a29bcff60a7
tests of image decoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
18
diff
changeset
|
2346 |
|
2a29bcff60a7
tests of image decoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
18
diff
changeset
|
2347 knixStudy = 'b9c08539-26f93bde-c81ab0d7-bffaf2cb-a4d0bdd0' |
| 64 | 2348 i = UploadInstance(_REMOTE, 'Knix/Loc/IM-0001-0001.dcm')['ID'] |
| 2349 | |
| 2350 # This is JPEG lossless | |
|
136
5634ef96fcc5
testing "short" option
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
133
diff
changeset
|
2351 self.assertEqual('1.2.840.10008.1.2.4.70', DoGet(_REMOTE, '/instances/%s/header' % i)['0002,0010']['Value']) |
| 64 | 2352 self.assertEqual('1.2.840.10008.1.2.4.70', DoGet(_REMOTE, '/instances/%s/header?simplify' % i)['TransferSyntaxUID']) |
|
136
5634ef96fcc5
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133
diff
changeset
|
2353 self.assertEqual('1.2.840.10008.1.2.4.70', DoGet(_REMOTE, '/instances/%s/header?short' % i)['0002,0010']) |
| 64 | 2354 |
|
21
2a29bcff60a7
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Sebastien Jodogne <s.jodogne@gmail.com>
parents:
18
diff
changeset
|
2355 UploadInstance(_REMOTE, 'Knix/Loc/IM-0001-0002.dcm') |
|
2a29bcff60a7
tests of image decoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
18
diff
changeset
|
2356 UploadInstance(_REMOTE, 'Knix/Loc/IM-0001-0003.dcm') |
|
2a29bcff60a7
tests of image decoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
18
diff
changeset
|
2357 |
|
2a29bcff60a7
tests of image decoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
18
diff
changeset
|
2358 a = UploadInstance(_REMOTE, 'Brainix/Flair/IM-0001-0001.dcm')['ID'] |
|
2a29bcff60a7
tests of image decoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
18
diff
changeset
|
2359 b = UploadInstance(_REMOTE, 'ColorTestImageJ.dcm')['ID'] |
|
2a29bcff60a7
tests of image decoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
18
diff
changeset
|
2360 self.assertEqual(0, len(DoGet(_LOCAL, '/instances'))) |
|
2a29bcff60a7
tests of image decoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
18
diff
changeset
|
2361 DoPost(_REMOTE, '/modalities/orthanctest/store', [ knixStudy, a, b ]) |
|
2a29bcff60a7
tests of image decoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
18
diff
changeset
|
2362 self.assertEqual(5, len(DoGet(_LOCAL, '/instances'))) |
|
2a29bcff60a7
tests of image decoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
18
diff
changeset
|
2363 |
|
2a29bcff60a7
tests of image decoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
18
diff
changeset
|
2364 self.assertEqual(3, len(DoGet(_REMOTE, '/exports')['Exports'])) |
|
2a29bcff60a7
tests of image decoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
18
diff
changeset
|
2365 |
|
2a29bcff60a7
tests of image decoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
18
diff
changeset
|
2366 DropOrthanc(_REMOTE) |
|
2a29bcff60a7
tests of image decoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
18
diff
changeset
|
2367 self.assertEqual(0, len(DoGet(_REMOTE, '/exports')['Exports'])) |
|
2a29bcff60a7
tests of image decoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
18
diff
changeset
|
2368 |
|
2a29bcff60a7
tests of image decoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
18
diff
changeset
|
2369 |
|
2a29bcff60a7
tests of image decoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
18
diff
changeset
|
2370 def test_pixel_data(self): |
|
2a29bcff60a7
tests of image decoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
18
diff
changeset
|
2371 jpeg = UploadInstance(_REMOTE, 'Knix/Loc/IM-0001-0001.dcm')['ID'] |
|
2a29bcff60a7
tests of image decoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
18
diff
changeset
|
2372 color = UploadInstance(_REMOTE, 'ColorTestImageJ.dcm')['ID'] |
|
2a29bcff60a7
tests of image decoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
18
diff
changeset
|
2373 phenix = UploadInstance(_REMOTE, 'Phenix/IM-0001-0001.dcm')['ID'] |
|
2a29bcff60a7
tests of image decoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
18
diff
changeset
|
2374 |
|
2a29bcff60a7
tests of image decoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
18
diff
changeset
|
2375 phenixSize = 358 * 512 * 2 |
|
2a29bcff60a7
tests of image decoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
18
diff
changeset
|
2376 colorSize = 1000 * 1000 * 3 |
|
2a29bcff60a7
tests of image decoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
18
diff
changeset
|
2377 jpegSize = 51918 |
|
2a29bcff60a7
tests of image decoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
18
diff
changeset
|
2378 |
|
2a29bcff60a7
tests of image decoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
18
diff
changeset
|
2379 self.assertEqual(1, len(DoGet(_REMOTE, '/instances/%s/content/7fe0-0010' % phenix))) |
|
2a29bcff60a7
tests of image decoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
18
diff
changeset
|
2380 self.assertEqual(1, len(DoGet(_REMOTE, '/instances/%s/content/7fe0-0010' % color))) |
|
2a29bcff60a7
tests of image decoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
18
diff
changeset
|
2381 self.assertEqual(2, len(DoGet(_REMOTE, '/instances/%s/content/7fe0-0010' % jpeg))) |
|
2a29bcff60a7
tests of image decoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
18
diff
changeset
|
2382 |
|
2a29bcff60a7
tests of image decoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
18
diff
changeset
|
2383 self.assertEqual(0, len(DoGet(_REMOTE, '/instances/%s/content/7fe0-0010/0' % jpeg))) |
|
2a29bcff60a7
tests of image decoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
18
diff
changeset
|
2384 self.assertEqual(jpegSize, len(DoGet(_REMOTE, '/instances/%s/content/7fe0-0010/1' % jpeg))) |
|
2a29bcff60a7
tests of image decoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
18
diff
changeset
|
2385 |
|
2a29bcff60a7
tests of image decoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
18
diff
changeset
|
2386 self.assertEqual(phenixSize, len(DoGet(_REMOTE, '/instances/%s/content/7fe0-0010/0' % phenix))) |
|
2a29bcff60a7
tests of image decoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
18
diff
changeset
|
2387 self.assertEqual(colorSize, len(DoGet(_REMOTE, '/instances/%s/content/7fe0-0010/0' % color))) |
|
2a29bcff60a7
tests of image decoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
18
diff
changeset
|
2388 |
|
2a29bcff60a7
tests of image decoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
18
diff
changeset
|
2389 |
|
2a29bcff60a7
tests of image decoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
18
diff
changeset
|
2390 def test_decode_brainix(self): |
|
2a29bcff60a7
tests of image decoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
18
diff
changeset
|
2391 brainix = [ |
|
2a29bcff60a7
tests of image decoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
18
diff
changeset
|
2392 UploadInstance(_REMOTE, 'Brainix/Epi/IM-0001-0001.dcm')['ID'], # (*) |
|
2a29bcff60a7
tests of image decoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
18
diff
changeset
|
2393 UploadInstance(_REMOTE, 'Formats/JpegLossless.dcm')['ID'], # JPEG-LS, same as (*) (since Orthanc 0.7.6) |
|
2a29bcff60a7
tests of image decoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
18
diff
changeset
|
2394 UploadInstance(_REMOTE, 'Formats/Jpeg.dcm')['ID'], # JPEG, same as (*) (since Orthanc 0.7.6) |
|
2a29bcff60a7
tests of image decoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
18
diff
changeset
|
2395 ] |
|
2a29bcff60a7
tests of image decoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
18
diff
changeset
|
2396 h = '6fb11b932d535c2be04beabd99793ff8' |
|
2a29bcff60a7
tests of image decoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
18
diff
changeset
|
2397 maxValue = 426.0 |
|
2a29bcff60a7
tests of image decoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
18
diff
changeset
|
2398 |
|
2a29bcff60a7
tests of image decoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
18
diff
changeset
|
2399 truth = Image.open(GetDatabasePath('Formats/Brainix.png')) |
|
2a29bcff60a7
tests of image decoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
18
diff
changeset
|
2400 for i in brainix: |
|
2a29bcff60a7
tests of image decoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
18
diff
changeset
|
2401 self.AssertSameImages(truth.getdata(), '/instances/%s/image-int16' % i) |
|
2a29bcff60a7
tests of image decoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
18
diff
changeset
|
2402 self.AssertSameImages(truth.getdata(), '/instances/%s/image-uint16' % i) |
|
2a29bcff60a7
tests of image decoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
18
diff
changeset
|
2403 |
|
2a29bcff60a7
tests of image decoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
18
diff
changeset
|
2404 truth2 = map(lambda x: min(255, x), truth.getdata()) |
|
2a29bcff60a7
tests of image decoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
18
diff
changeset
|
2405 for i in brainix: |
|
2a29bcff60a7
tests of image decoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
18
diff
changeset
|
2406 self.AssertSameImages(truth2, '/instances/%s/image-uint8' % i) |
|
2a29bcff60a7
tests of image decoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
18
diff
changeset
|
2407 |
|
2a29bcff60a7
tests of image decoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
18
diff
changeset
|
2408 truth2 = map(lambda x: x * 255.0 / maxValue, truth.getdata()) |
|
2a29bcff60a7
tests of image decoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
18
diff
changeset
|
2409 for i in brainix: |
|
2a29bcff60a7
tests of image decoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
18
diff
changeset
|
2410 self.AssertSameImages(truth2, '/instances/%s/preview' % i) |
|
2a29bcff60a7
tests of image decoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
18
diff
changeset
|
2411 |
|
2a29bcff60a7
tests of image decoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
18
diff
changeset
|
2412 for i in brainix: |
|
2a29bcff60a7
tests of image decoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
18
diff
changeset
|
2413 self.assertEqual(h, ComputeMD5(DoGet(_REMOTE, '/instances/%s/matlab' % i))) |
|
2a29bcff60a7
tests of image decoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
18
diff
changeset
|
2414 |
|
2a29bcff60a7
tests of image decoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
18
diff
changeset
|
2415 |
|
2a29bcff60a7
tests of image decoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
18
diff
changeset
|
2416 def test_decode_color(self): |
|
2a29bcff60a7
tests of image decoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
18
diff
changeset
|
2417 imagej = UploadInstance(_REMOTE, 'ColorTestImageJ.dcm')['ID'] |
|
2a29bcff60a7
tests of image decoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
18
diff
changeset
|
2418 color = UploadInstance(_REMOTE, 'ColorTestMalaterre.dcm')['ID'] |
|
2a29bcff60a7
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Sebastien Jodogne <s.jodogne@gmail.com>
parents:
18
diff
changeset
|
2419 |
|
2a29bcff60a7
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Sebastien Jodogne <s.jodogne@gmail.com>
parents:
18
diff
changeset
|
2420 for i in [ imagej, color ]: |
|
2a29bcff60a7
tests of image decoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
18
diff
changeset
|
2421 for j in [ 'image-uint8', 'image-uint16', 'image-int16' ]: |
|
2a29bcff60a7
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Sebastien Jodogne <s.jodogne@gmail.com>
parents:
18
diff
changeset
|
2422 self.assertRaises(Exception, lambda: DoGet(_REMOTE, '/instances/%s/%s' % (i, j))) |
|
2a29bcff60a7
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Sebastien Jodogne <s.jodogne@gmail.com>
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18
diff
changeset
|
2423 |
|
2a29bcff60a7
tests of image decoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
18
diff
changeset
|
2424 self.assertEqual('c14c687f7a1ea9fe022479fc87c67274', ComputeMD5(DoGet(_REMOTE, '/instances/%s/preview' % imagej))) |
|
2a29bcff60a7
tests of image decoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
18
diff
changeset
|
2425 self.assertEqual('a87d122918a56f803bcfe9d2586b9125', ComputeMD5(DoGet(_REMOTE, '/instances/%s/preview' % color))) |
|
2a29bcff60a7
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Sebastien Jodogne <s.jodogne@gmail.com>
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18
diff
changeset
|
2426 |
|
2a29bcff60a7
tests of image decoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
18
diff
changeset
|
2427 self.assertEqual('30cc46bfa7aba77a40e4178f6184c25a', ComputeMD5(DoGet(_REMOTE, '/instances/%s/matlab' % imagej))) |
|
2a29bcff60a7
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Sebastien Jodogne <s.jodogne@gmail.com>
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18
diff
changeset
|
2428 self.assertEqual('ff195005cef06b59666fd220a9b4cd9a', ComputeMD5(DoGet(_REMOTE, '/instances/%s/matlab' % color))) |
|
2a29bcff60a7
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Sebastien Jodogne <s.jodogne@gmail.com>
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18
diff
changeset
|
2429 |
|
2a29bcff60a7
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Sebastien Jodogne <s.jodogne@gmail.com>
parents:
18
diff
changeset
|
2430 |
|
2a29bcff60a7
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Sebastien Jodogne <s.jodogne@gmail.com>
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18
diff
changeset
|
2431 def test_decode_rf(self): |
|
2a29bcff60a7
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18
diff
changeset
|
2432 rf = UploadInstance(_REMOTE, 'KarstenHilbertRF.dcm')['ID'] |
|
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Sebastien Jodogne <s.jodogne@gmail.com>
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18
diff
changeset
|
2433 truth = Image.open(GetDatabasePath('Formats/KarstenHilbertRF.png')) |
|
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Sebastien Jodogne <s.jodogne@gmail.com>
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18
diff
changeset
|
2434 |
|
2a29bcff60a7
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Sebastien Jodogne <s.jodogne@gmail.com>
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18
diff
changeset
|
2435 self.AssertSameImages(truth.getdata(), '/instances/%s/image-uint8' % rf) |
|
2a29bcff60a7
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Sebastien Jodogne <s.jodogne@gmail.com>
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18
diff
changeset
|
2436 self.AssertSameImages(truth.getdata(), '/instances/%s/image-uint16' % rf) |
|
2a29bcff60a7
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Sebastien Jodogne <s.jodogne@gmail.com>
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18
diff
changeset
|
2437 self.AssertSameImages(truth.getdata(), '/instances/%s/image-int16' % rf) |
|
2a29bcff60a7
tests of image decoding
Sebastien Jodogne <s.jodogne@gmail.com>
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18
diff
changeset
|
2438 self.AssertSameImages(truth.getdata(), '/instances/%s/preview' % rf) |
|
2a29bcff60a7
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Sebastien Jodogne <s.jodogne@gmail.com>
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18
diff
changeset
|
2439 |
|
2a29bcff60a7
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18
diff
changeset
|
2440 self.assertEqual('42254d70efd2f4a1b8f3455909689f0e', ComputeMD5(DoGet(_REMOTE, '/instances/%s/matlab' % rf))) |
|
2a29bcff60a7
tests of image decoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
18
diff
changeset
|
2441 |
|
2a29bcff60a7
tests of image decoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
18
diff
changeset
|
2442 |
|
2a29bcff60a7
tests of image decoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
18
diff
changeset
|
2443 def test_decode_multiframe(self): |
|
2a29bcff60a7
tests of image decoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
18
diff
changeset
|
2444 mf = UploadInstance(_REMOTE, 'Multiframe.dcm')['ID'] |
|
2a29bcff60a7
tests of image decoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
18
diff
changeset
|
2445 |
|
2a29bcff60a7
tests of image decoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
18
diff
changeset
|
2446 # Test the first frame |
|
2a29bcff60a7
tests of image decoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
18
diff
changeset
|
2447 truth = Image.open(GetDatabasePath('Formats/Multiframe0.png')) |
|
2a29bcff60a7
tests of image decoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
18
diff
changeset
|
2448 self.AssertSameImages(truth.getdata(), '/instances/%s/image-uint8' % mf) |
|
2a29bcff60a7
tests of image decoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
18
diff
changeset
|
2449 self.AssertSameImages(truth.getdata(), '/instances/%s/image-uint16' % mf) |
|
2a29bcff60a7
tests of image decoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
18
diff
changeset
|
2450 self.AssertSameImages(truth.getdata(), '/instances/%s/image-int16' % mf) |
|
2a29bcff60a7
tests of image decoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
18
diff
changeset
|
2451 self.AssertSameImages(truth.getdata(), '/instances/%s/preview' % mf) |
|
2a29bcff60a7
tests of image decoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
18
diff
changeset
|
2452 self.assertEqual('9812b99d93bbcd4e7684ded089b5dfb3', ComputeMD5(DoGet(_REMOTE, '/instances/%s/matlab' % mf))) |
|
2a29bcff60a7
tests of image decoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
18
diff
changeset
|
2453 |
|
2a29bcff60a7
tests of image decoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
18
diff
changeset
|
2454 self.AssertSameImages(truth.getdata(), '/instances/%s/frames/0/image-uint16' % mf) |
|
2a29bcff60a7
tests of image decoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
18
diff
changeset
|
2455 |
|
2a29bcff60a7
tests of image decoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
18
diff
changeset
|
2456 # Test the last frame |
|
2a29bcff60a7
tests of image decoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
18
diff
changeset
|
2457 truth = Image.open(GetDatabasePath('Formats/Multiframe75.png')) |
|
2a29bcff60a7
tests of image decoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
18
diff
changeset
|
2458 self.AssertSameImages(truth.getdata(), '/instances/%s/frames/75/image-uint16' % mf) |
|
2a29bcff60a7
tests of image decoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
18
diff
changeset
|
2459 |
|
2a29bcff60a7
tests of image decoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
18
diff
changeset
|
2460 |
|
2a29bcff60a7
tests of image decoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
18
diff
changeset
|
2461 def test_decode_signed(self): |
|
2a29bcff60a7
tests of image decoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
18
diff
changeset
|
2462 signed = UploadInstance(_REMOTE, 'SignedCT.dcm')['ID'] |
|
2a29bcff60a7
tests of image decoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
18
diff
changeset
|
2463 minValue = -2000 |
|
2a29bcff60a7
tests of image decoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
18
diff
changeset
|
2464 maxValue = 4042 |
|
2a29bcff60a7
tests of image decoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
18
diff
changeset
|
2465 |
|
2a29bcff60a7
tests of image decoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
18
diff
changeset
|
2466 truth = Image.open(GetDatabasePath('Formats/SignedCT.png')) |
|
2a29bcff60a7
tests of image decoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
18
diff
changeset
|
2467 self.AssertSameImages(truth.getdata(), '/instances/%s/image-int16' % signed) |
|
2a29bcff60a7
tests of image decoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
18
diff
changeset
|
2468 |
|
2a29bcff60a7
tests of image decoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
18
diff
changeset
|
2469 truth2 = map(lambda x: 0 if x >= 32768 else x, truth.getdata()) |
|
2a29bcff60a7
tests of image decoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
18
diff
changeset
|
2470 self.AssertSameImages(truth2, '/instances/%s/image-uint16' % signed) |
|
2a29bcff60a7
tests of image decoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
18
diff
changeset
|
2471 |
|
2a29bcff60a7
tests of image decoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
18
diff
changeset
|
2472 truth3 = map(lambda x: 255 if x >= 256 else x, truth2) |
|
2a29bcff60a7
tests of image decoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
18
diff
changeset
|
2473 self.AssertSameImages(truth3, '/instances/%s/image-uint8' % signed) |
|
2a29bcff60a7
tests of image decoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
18
diff
changeset
|
2474 |
|
2a29bcff60a7
tests of image decoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
18
diff
changeset
|
2475 tmp = map(lambda x: x - 65536 if x >= 32768 else x, truth.getdata()) |
|
2a29bcff60a7
tests of image decoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
18
diff
changeset
|
2476 tmp = map(lambda x: (255.0 * (x - minValue)) / (maxValue - minValue), tmp) |
|
2a29bcff60a7
tests of image decoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
18
diff
changeset
|
2477 self.AssertSameImages(tmp, '/instances/%s/preview' % signed) |
|
2a29bcff60a7
tests of image decoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
18
diff
changeset
|
2478 |
|
2a29bcff60a7
tests of image decoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
18
diff
changeset
|
2479 self.assertEqual('b57e6c872a3da50877c7da689b03a444', ComputeMD5(DoGet(_REMOTE, '/instances/%s/matlab' % signed))) |
| 22 | 2480 |
| 2481 | |
|
46
85b2e36ed392
explicit GoogleCode source
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
45
diff
changeset
|
2482 def test_googlecode_issue_32(self): |
|
92
dbcbffb889da
test_findscu_encoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
89
diff
changeset
|
2483 self.assertRaises(Exception, lambda: DoPut(_REMOTE, '/tools/default-encoding', 'nope')) |
|
dbcbffb889da
test_findscu_encoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
89
diff
changeset
|
2484 self.assertEqual('Windows1251', DoPut(_REMOTE, '/tools/default-encoding', 'Windows1251')) |
|
dbcbffb889da
test_findscu_encoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
89
diff
changeset
|
2485 self.assertEqual('Windows1251', DoGet(_REMOTE, '/tools/default-encoding')) |
|
dbcbffb889da
test_findscu_encoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
89
diff
changeset
|
2486 |
| 22 | 2487 f = UploadInstance(_REMOTE, 'Issue32.dcm')['ID'] |
| 2488 tags = DoGet(_REMOTE, '/instances/%s/tags?simplify' % f) | |
| 2489 self.assertEqual(u'Рентгенография', tags['SeriesDescription']) | |
| 2490 self.assertEqual(u'Таз', tags['BodyPartExamined']) | |
| 2491 self.assertEqual(u'Прямая', tags['ViewPosition']) | |
| 2492 | |
|
92
dbcbffb889da
test_findscu_encoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
89
diff
changeset
|
2493 # Replay the same test using Latin1 as default encoding: This must fail |
|
dbcbffb889da
test_findscu_encoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
89
diff
changeset
|
2494 self.assertEqual('Latin1', DoPut(_REMOTE, '/tools/default-encoding', 'Latin1')) |
|
dbcbffb889da
test_findscu_encoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
89
diff
changeset
|
2495 |
|
dbcbffb889da
test_findscu_encoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
89
diff
changeset
|
2496 DoDelete(_REMOTE, '/instances/%s' % f) |
|
dbcbffb889da
test_findscu_encoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
89
diff
changeset
|
2497 f = UploadInstance(_REMOTE, 'Issue32.dcm')['ID'] |
|
dbcbffb889da
test_findscu_encoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
89
diff
changeset
|
2498 tags = DoGet(_REMOTE, '/instances/%s/tags?simplify' % f) |
|
dbcbffb889da
test_findscu_encoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
89
diff
changeset
|
2499 self.assertNotEqual(u'Рентгенография', tags['SeriesDescription']) |
|
dbcbffb889da
test_findscu_encoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
89
diff
changeset
|
2500 |
| 314 | 2501 # Back to UTF-8 |
| 2502 self.assertEqual('Utf8', DoPut(_REMOTE, '/tools/default-encoding', 'Utf8')) | |
| 2503 | |
|
92
dbcbffb889da
test_findscu_encoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
89
diff
changeset
|
2504 |
| 22 | 2505 def test_encodings(self): |
| 23 | 2506 # Latin-1 (ISO_IR 100) |
| 22 | 2507 brainix = UploadInstance(_REMOTE, 'Brainix/Epi/IM-0001-0001.dcm')['ID'] |
| 2508 tags = DoGet(_REMOTE, '/instances/%s/tags?simplify' % brainix) | |
| 2509 self.assertEqual(u'IRM cérébrale, neuro-crâne', tags['StudyDescription']) | |
| 23 | 2510 |
| 2511 # Latin-2 (ISO_IR 101) | |
| 2512 a = UploadInstance(_REMOTE, 'MarekLatin2.dcm')['ID'] | |
| 2513 i = DoGet(_REMOTE, '/instances/%s/simplified-tags' % a) | |
| 2514 # dcm2xml MarekLatin2.dcm | iconv -f latin2 -t utf-8 | xmllint --format - | |
| 2515 self.assertEqual('Imię i Nazwisko osoby opisującej', | |
| 2516 i['ContentSequence'][4]['ConceptNameCodeSequence'][0]['CodeMeaning'].encode('utf-8')) | |
| 2517 | |
|
26
040f6ef1394a
test_storescu_custom_aet
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
23
diff
changeset
|
2518 |
|
040f6ef1394a
test_storescu_custom_aet
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
23
diff
changeset
|
2519 def test_storescu_custom_aet(self): |
|
040f6ef1394a
test_storescu_custom_aet
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
23
diff
changeset
|
2520 # This tests a feature introduced in Orthanc 0.9.1: "Custom |
|
040f6ef1394a
test_storescu_custom_aet
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
23
diff
changeset
|
2521 # setting of the local AET during C-Store SCU (both in Lua and |
|
040f6ef1394a
test_storescu_custom_aet
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
23
diff
changeset
|
2522 # in the REST API)." |
|
040f6ef1394a
test_storescu_custom_aet
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
23
diff
changeset
|
2523 # https://groups.google.com/forum/#!msg/orthanc-users/o5qMULformU/wZjW2iSaMcAJ |
|
040f6ef1394a
test_storescu_custom_aet
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
23
diff
changeset
|
2524 |
|
040f6ef1394a
test_storescu_custom_aet
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
23
diff
changeset
|
2525 self.assertEqual(0, len(DoGet(_LOCAL, '/patients'))) |
|
040f6ef1394a
test_storescu_custom_aet
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
23
diff
changeset
|
2526 |
|
040f6ef1394a
test_storescu_custom_aet
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
23
diff
changeset
|
2527 a = UploadInstance(_REMOTE, 'Knee/T1/IM-0001-0001.dcm') |
|
040f6ef1394a
test_storescu_custom_aet
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
23
diff
changeset
|
2528 b = UploadInstance(_REMOTE, 'Knee/T1/IM-0001-0002.dcm') |
|
040f6ef1394a
test_storescu_custom_aet
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
23
diff
changeset
|
2529 c = UploadInstance(_REMOTE, 'Knee/T1/IM-0001-0003.dcm') |
|
040f6ef1394a
test_storescu_custom_aet
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
23
diff
changeset
|
2530 |
|
040f6ef1394a
test_storescu_custom_aet
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
23
diff
changeset
|
2531 j = DoPost(_REMOTE, '/modalities/orthanctest/store', { |
|
040f6ef1394a
test_storescu_custom_aet
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
23
diff
changeset
|
2532 'LocalAet' : 'YOP', |
|
040f6ef1394a
test_storescu_custom_aet
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
23
diff
changeset
|
2533 'Resources' : [ a['ID'], b['ID'] ] |
|
040f6ef1394a
test_storescu_custom_aet
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
23
diff
changeset
|
2534 }) |
|
040f6ef1394a
test_storescu_custom_aet
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
23
diff
changeset
|
2535 |
|
040f6ef1394a
test_storescu_custom_aet
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
23
diff
changeset
|
2536 self.assertEqual(2, len(DoGet(_LOCAL, '/instances'))) |
|
040f6ef1394a
test_storescu_custom_aet
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
23
diff
changeset
|
2537 self.assertEqual('YOP', DoGet(_LOCAL, '/instances/%s/metadata/RemoteAET' % a['ID'])) |
|
040f6ef1394a
test_storescu_custom_aet
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
23
diff
changeset
|
2538 |
|
040f6ef1394a
test_storescu_custom_aet
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
23
diff
changeset
|
2539 DropOrthanc(_LOCAL) |
|
040f6ef1394a
test_storescu_custom_aet
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
23
diff
changeset
|
2540 self.assertEqual(0, len(DoGet(_LOCAL, '/instances'))) |
|
040f6ef1394a
test_storescu_custom_aet
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
23
diff
changeset
|
2541 |
|
040f6ef1394a
test_storescu_custom_aet
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
23
diff
changeset
|
2542 j = DoPost(_REMOTE, '/modalities/orthanctest/store', { |
|
040f6ef1394a
test_storescu_custom_aet
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
23
diff
changeset
|
2543 'Resources' : [ c['ID'] ] |
|
040f6ef1394a
test_storescu_custom_aet
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
23
diff
changeset
|
2544 }) |
|
040f6ef1394a
test_storescu_custom_aet
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
23
diff
changeset
|
2545 |
|
040f6ef1394a
test_storescu_custom_aet
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
23
diff
changeset
|
2546 self.assertEqual(1, len(DoGet(_LOCAL, '/instances'))) |
|
040f6ef1394a
test_storescu_custom_aet
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
23
diff
changeset
|
2547 self.assertEqual('ORTHANC', DoGet(_LOCAL, '/instances/%s/metadata/RemoteAET' % c['ID'])) |
|
040f6ef1394a
test_storescu_custom_aet
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
23
diff
changeset
|
2548 |
|
040f6ef1394a
test_storescu_custom_aet
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
23
diff
changeset
|
2549 DropOrthanc(_REMOTE) |
|
040f6ef1394a
test_storescu_custom_aet
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
23
diff
changeset
|
2550 DropOrthanc(_LOCAL) |
|
040f6ef1394a
test_storescu_custom_aet
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
23
diff
changeset
|
2551 |
| 174 | 2552 InstallLuaScriptFromPath(_REMOTE, 'Lua/AutoroutingChangeAet.lua') |
|
26
040f6ef1394a
test_storescu_custom_aet
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
23
diff
changeset
|
2553 DoPost(_REMOTE, '/tools/execute-script', 'aet = "HELLO"', 'application/lua') |
|
040f6ef1394a
test_storescu_custom_aet
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
23
diff
changeset
|
2554 |
|
040f6ef1394a
test_storescu_custom_aet
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
23
diff
changeset
|
2555 self.assertEqual(0, len(DoGet(_LOCAL, '/instances'))) |
|
040f6ef1394a
test_storescu_custom_aet
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
23
diff
changeset
|
2556 UploadInstance(_REMOTE, 'Knee/T1/IM-0001-0001.dcm') |
|
040f6ef1394a
test_storescu_custom_aet
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
23
diff
changeset
|
2557 WaitEmpty(_REMOTE) |
|
040f6ef1394a
test_storescu_custom_aet
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
23
diff
changeset
|
2558 self.assertEqual(1, len(DoGet(_LOCAL, '/instances'))) |
|
040f6ef1394a
test_storescu_custom_aet
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
23
diff
changeset
|
2559 self.assertEqual('HELLO', DoGet(_LOCAL, '/instances/%s/metadata/RemoteAET' % a['ID'])) |
|
040f6ef1394a
test_storescu_custom_aet
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
23
diff
changeset
|
2560 |
|
040f6ef1394a
test_storescu_custom_aet
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
23
diff
changeset
|
2561 DoPost(_REMOTE, '/tools/execute-script', 'aet = nill', 'application/lua') |
|
040f6ef1394a
test_storescu_custom_aet
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
23
diff
changeset
|
2562 UploadInstance(_REMOTE, 'Knee/T1/IM-0001-0002.dcm') |
|
040f6ef1394a
test_storescu_custom_aet
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
23
diff
changeset
|
2563 WaitEmpty(_REMOTE) |
|
040f6ef1394a
test_storescu_custom_aet
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
23
diff
changeset
|
2564 self.assertEqual(2, len(DoGet(_LOCAL, '/instances'))) |
|
040f6ef1394a
test_storescu_custom_aet
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
23
diff
changeset
|
2565 self.assertEqual('ORTHANC', DoGet(_LOCAL, '/instances/%s/metadata/RemoteAET' % b['ID'])) |
|
34
1047d7bc5210
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diff
changeset
|
2566 |
|
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parents:
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diff
changeset
|
2567 def test_resources_since_limit(self): |
|
1047d7bc5210
test limit and since arguments while retrieving DICOM resources in the REST API
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parents:
28
diff
changeset
|
2568 # Upload 16 instances |
|
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test limit and since arguments while retrieving DICOM resources in the REST API
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
28
diff
changeset
|
2569 for i in range(4): |
|
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test limit and since arguments while retrieving DICOM resources in the REST API
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
28
diff
changeset
|
2570 UploadInstance(_REMOTE, 'Brainix/Flair/IM-0001-000%d.dcm' % (i + 1)) |
|
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test limit and since arguments while retrieving DICOM resources in the REST API
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
28
diff
changeset
|
2571 UploadInstance(_REMOTE, 'Brainix/Epi/IM-0001-000%d.dcm' % (i + 1)) |
|
1047d7bc5210
test limit and since arguments while retrieving DICOM resources in the REST API
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
28
diff
changeset
|
2572 UploadInstance(_REMOTE, 'Knee/T1/IM-0001-000%d.dcm' % (i + 1)) |
|
1047d7bc5210
test limit and since arguments while retrieving DICOM resources in the REST API
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
28
diff
changeset
|
2573 UploadInstance(_REMOTE, 'Knee/T2/IM-0001-000%d.dcm' % (i + 1)) |
|
1047d7bc5210
test limit and since arguments while retrieving DICOM resources in the REST API
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
28
diff
changeset
|
2574 |
|
1047d7bc5210
test limit and since arguments while retrieving DICOM resources in the REST API
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
28
diff
changeset
|
2575 self.assertEqual(2, len(DoGet(_REMOTE, '/patients'))) |
|
1047d7bc5210
test limit and since arguments while retrieving DICOM resources in the REST API
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
28
diff
changeset
|
2576 self.assertEqual(2, len(DoGet(_REMOTE, '/studies'))) |
|
1047d7bc5210
test limit and since arguments while retrieving DICOM resources in the REST API
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
changeset
|
2577 self.assertEqual(4, len(DoGet(_REMOTE, '/series'))) |
|
1047d7bc5210
test limit and since arguments while retrieving DICOM resources in the REST API
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
28
diff
changeset
|
2578 self.assertEqual(16, len(DoGet(_REMOTE, '/instances'))) |
|
1047d7bc5210
test limit and since arguments while retrieving DICOM resources in the REST API
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
28
diff
changeset
|
2579 |
|
1047d7bc5210
test limit and since arguments while retrieving DICOM resources in the REST API
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
28
diff
changeset
|
2580 self.assertRaises(Exception, lambda: DoGet(_REMOTE, '/patients&since=10' % i)) |
|
1047d7bc5210
test limit and since arguments while retrieving DICOM resources in the REST API
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
28
diff
changeset
|
2581 self.assertRaises(Exception, lambda: DoGet(_REMOTE, '/patients&limit=10' % i)) |
|
1047d7bc5210
test limit and since arguments while retrieving DICOM resources in the REST API
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parents:
28
diff
changeset
|
2582 |
|
1047d7bc5210
test limit and since arguments while retrieving DICOM resources in the REST API
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
28
diff
changeset
|
2583 self.assertEqual(0, len(DoGet(_REMOTE, '/patients?since=0&limit=0'))) |
|
1047d7bc5210
test limit and since arguments while retrieving DICOM resources in the REST API
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
28
diff
changeset
|
2584 self.assertEqual(2, len(DoGet(_REMOTE, '/patients?since=0&limit=100'))) |
|
1047d7bc5210
test limit and since arguments while retrieving DICOM resources in the REST API
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
28
diff
changeset
|
2585 self.assertEqual(2, len(DoGet(_REMOTE, '/studies?since=0&limit=100'))) |
|
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test limit and since arguments while retrieving DICOM resources in the REST API
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
28
diff
changeset
|
2586 self.assertEqual(4, len(DoGet(_REMOTE, '/series?since=0&limit=100'))) |
|
1047d7bc5210
test limit and since arguments while retrieving DICOM resources in the REST API
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
28
diff
changeset
|
2587 self.assertEqual(16, len(DoGet(_REMOTE, '/instances?since=0&limit=100'))) |
|
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test limit and since arguments while retrieving DICOM resources in the REST API
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
changeset
|
2588 self.assertEqual(1, len(DoGet(_REMOTE, '/patients?since=1&limit=100'))) |
|
1047d7bc5210
test limit and since arguments while retrieving DICOM resources in the REST API
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
28
diff
changeset
|
2589 self.assertEqual(0, len(DoGet(_REMOTE, '/patients?since=2&limit=100'))) |
|
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test limit and since arguments while retrieving DICOM resources in the REST API
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
28
diff
changeset
|
2590 self.assertEqual(0, len(DoGet(_REMOTE, '/patients?since=3&limit=100'))) |
|
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test limit and since arguments while retrieving DICOM resources in the REST API
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
28
diff
changeset
|
2591 self.assertEqual(1, len(DoGet(_REMOTE, '/studies?since=1&limit=100'))) |
|
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test limit and since arguments while retrieving DICOM resources in the REST API
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
28
diff
changeset
|
2592 self.assertEqual(3, len(DoGet(_REMOTE, '/series?since=1&limit=100'))) |
|
1047d7bc5210
test limit and since arguments while retrieving DICOM resources in the REST API
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
28
diff
changeset
|
2593 self.assertEqual(2, len(DoGet(_REMOTE, '/series?since=2&limit=100'))) |
|
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test limit and since arguments while retrieving DICOM resources in the REST API
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
changeset
|
2594 self.assertEqual(1, len(DoGet(_REMOTE, '/series?since=3&limit=100'))) |
|
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test limit and since arguments while retrieving DICOM resources in the REST API
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
changeset
|
2595 self.assertEqual(0, len(DoGet(_REMOTE, '/series?since=4&limit=100'))) |
|
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test limit and since arguments while retrieving DICOM resources in the REST API
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
changeset
|
2596 self.assertEqual(0, len(DoGet(_REMOTE, '/series?since=100&limit=100'))) |
|
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test limit and since arguments while retrieving DICOM resources in the REST API
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
changeset
|
2597 self.assertEqual(15, len(DoGet(_REMOTE, '/instances?since=1&limit=100'))) |
|
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parents:
28
diff
changeset
|
2598 |
|
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test limit and since arguments while retrieving DICOM resources in the REST API
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
28
diff
changeset
|
2599 for limit in [ 1, 2, 3, 7, 16, 17 ]: |
|
1047d7bc5210
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Sebastien Jodogne <s.jodogne@gmail.com>
parents:
28
diff
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|
2600 s = {} |
|
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test limit and since arguments while retrieving DICOM resources in the REST API
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
28
diff
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|
2601 since = 0 |
|
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Sebastien Jodogne <s.jodogne@gmail.com>
parents:
28
diff
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|
2602 while True: |
|
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Sebastien Jodogne <s.jodogne@gmail.com>
parents:
28
diff
changeset
|
2603 t = DoGet(_REMOTE, '/instances?since=%d&limit=%d' % (since, limit)) |
|
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test limit and since arguments while retrieving DICOM resources in the REST API
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
28
diff
changeset
|
2604 if len(t) == 0: |
|
1047d7bc5210
test limit and since arguments while retrieving DICOM resources in the REST API
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
28
diff
changeset
|
2605 break |
|
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test limit and since arguments while retrieving DICOM resources in the REST API
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
28
diff
changeset
|
2606 |
|
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test limit and since arguments while retrieving DICOM resources in the REST API
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
28
diff
changeset
|
2607 since += len(t) |
|
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test limit and since arguments while retrieving DICOM resources in the REST API
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
28
diff
changeset
|
2608 for i in t: |
|
1047d7bc5210
test limit and since arguments while retrieving DICOM resources in the REST API
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
28
diff
changeset
|
2609 s[i] = None |
|
1047d7bc5210
test limit and since arguments while retrieving DICOM resources in the REST API
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
28
diff
changeset
|
2610 |
|
1047d7bc5210
test limit and since arguments while retrieving DICOM resources in the REST API
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
28
diff
changeset
|
2611 self.assertEqual(16, len(s)) |
|
1047d7bc5210
test limit and since arguments while retrieving DICOM resources in the REST API
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
28
diff
changeset
|
2612 for instance in DoGet(_REMOTE, '/instances'): |
|
1047d7bc5210
test limit and since arguments while retrieving DICOM resources in the REST API
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
28
diff
changeset
|
2613 self.assertTrue(instance in s) |
| 36 | 2614 |
| 2615 | |
| 2616 def test_create_pdf(self): | |
| 2617 # Upload 4 instances | |
| 2618 brainixInstance = UploadInstance(_REMOTE, 'Brainix/Flair/IM-0001-0001.dcm')['ID'] | |
| 2619 UploadInstance(_REMOTE, 'Brainix/Epi/IM-0001-0001.dcm') | |
| 2620 UploadInstance(_REMOTE, 'Knee/T1/IM-0001-0001.dcm') | |
| 2621 UploadInstance(_REMOTE, 'Knee/T2/IM-0001-0001.dcm') | |
| 2622 | |
| 2623 brainixPatient = '16738bc3-e47ed42a-43ce044c-a3414a45-cb069bd0' | |
| 2624 brainixStudy = '27f7126f-4f66fb14-03f4081b-f9341db2-53925988' | |
| 2625 brainixEpi = '2ac1316d-3e432022-62eabff2-c59f5475-9b1ac3f8' | |
| 2626 | |
| 2627 with open(GetDatabasePath('HelloWorld.pdf'), 'rb') as f: | |
| 2628 pdf = f.read() | |
| 2629 | |
| 2630 i = DoPost(_REMOTE, '/tools/create-dicom', | |
| 2631 json.dumps({ | |
| 2632 'Tags' : { | |
| 2633 'PatientName' : 'Jodogne', | |
| 2634 'Modality' : 'CT', | |
| 2635 }, | |
| 2636 'Content' : 'data:application/pdf;base64,' + base64.b64encode(pdf) | |
| 2637 })) | |
| 2638 | |
| 2639 self.assertEqual('Jodogne', DoGet(_REMOTE, '/instances/%s/content/PatientName' % i['ID']).strip()) | |
| 2640 self.assertEqual('OT', DoGet(_REMOTE, '/instances/%s/content/Modality' % i['ID']).strip()) | |
| 2641 | |
| 2642 b = DoGet(_REMOTE, '/instances/%s/content/0042-0011' % i['ID']) | |
| 2643 self.assertEqual(len(b), len(pdf) + 1) | |
| 2644 self.assertEqual(ComputeMD5(b), ComputeMD5(pdf + '\0')) | |
| 2645 | |
| 2646 self.assertRaises(Exception, lambda: DoPost(_REMOTE, '/tools/create-dicom', | |
| 2647 json.dumps({ | |
| 2648 'Parent' : brainixPatient, | |
| 2649 'Tags' : { | |
| 2650 'PatientName' : 'Jodogne', | |
| 2651 } | |
| 2652 }))) | |
| 2653 | |
| 2654 i = DoPost(_REMOTE, '/tools/create-dicom', | |
| 2655 json.dumps({ | |
| 2656 'Parent' : brainixPatient, | |
| 2657 'Tags' : { 'StudyDescription' : 'PDF^Patient' }, | |
| 2658 'Content' : 'data:application/pdf;base64,' + base64.b64encode(pdf) | |
| 2659 })) | |
| 2660 | |
| 2661 self.assertEqual(brainixPatient, DoGet(_REMOTE, '/instances/%s/patient' % i['ID'])['ID']) | |
| 2662 | |
| 2663 i = DoPost(_REMOTE, '/tools/create-dicom', | |
| 2664 json.dumps({ | |
| 2665 'Parent' : brainixStudy, | |
| 2666 'Tags' : { 'SeriesDescription' : 'PDF^Study' }, | |
| 2667 'Content' : 'data:application/pdf;base64,' + base64.b64encode(pdf) | |
| 2668 })) | |
| 2669 | |
| 2670 self.assertEqual(brainixStudy, DoGet(_REMOTE, '/instances/%s/study' % i['ID'])['ID']) | |
| 2671 | |
| 2672 i = DoPost(_REMOTE, '/tools/create-dicom', | |
| 2673 json.dumps({ | |
| 2674 'Parent' : brainixEpi, | |
| 37 | 2675 'Tags' : { 'SpecificCharacterSet' : 'ISO_IR 13' }, |
| 36 | 2676 'Content' : 'data:application/pdf;base64,' + base64.b64encode(pdf) |
| 2677 })) | |
| 2678 | |
| 2679 self.assertEqual(brainixEpi, DoGet(_REMOTE, '/instances/%s/series' % i['ID'])['ID']) | |
| 2680 | |
| 2681 b = DoGet(_REMOTE, '/instances/%s/pdf' % i['ID']) | |
| 2682 self.assertEqual(len(b), len(pdf)) | |
| 2683 self.assertEqual(ComputeMD5(b), ComputeMD5(pdf)) | |
| 2684 | |
| 2685 self.assertRaises(Exception, lambda: DoGet(_REMOTE, '/instances/%s/pdf' % brainixInstance)) | |
| 38 | 2686 |
| 2687 | |
| 2688 def test_create_series(self): | |
| 2689 i = DoPost(_REMOTE, '/tools/create-dicom', | |
| 2690 json.dumps({ | |
| 2691 'Tags' : { | |
| 40 | 2692 'SpecificCharacterSet' : 'ISO_IR 100', |
| 2693 'PatientName' : 'Sébastien Jodogne', | |
| 38 | 2694 'Modality' : 'CT', |
| 2695 }, | |
| 2696 'Content' : [ | |
| 40 | 2697 { |
| 2698 'Content': 'data:image/png;base64,iVBORw0KGgoAAAANSUhEUgAAAAUAAAAFCAYAAACNbyblAAAAHElEQVQI12P4//8/w38GIAXDIBKE0DHxgljNBAAO9TXL0Y4OHwAAAABJRU5ErkJggg==', # red dot in RGBA | |
| 2699 'Tags' : { 'ImageComments' : 'Tutu' } | |
| 2700 }, | |
| 38 | 2701 'data:image/png;base64,iVBORw0KGgoAAAANSUhEUgAAABAAAAAQCAYAAAAf8/9hAAAAoUlEQVQ4jZ2SWw3EIBREjwUsYAELa2EtoAULFUCyXAtroRZqoRbox254BdLC/DZnZjoXWJFgCDg8egW2CBEhEnDzyRk+Ecxz2KP/0AL8S99T+jQccAVs22qKwAuPuq0uyNg9cPLh3am+pe/dkHLZtqJHj6vXJrZ7nvzvxxgemXgUwnGfXqpee09mUwp8m022OYP6bLF7mVuVe0y/umxinsAXRd9z0k1ubWsAAAAASUVORK5CYII=', |
| 2702 ] | |
| 2703 })) | |
| 2704 | |
| 2705 s = DoGet(_REMOTE, i['Path']) | |
| 2706 self.assertEqual('Series', s['Type']) | |
| 2707 self.assertEqual(s['ID'], i['ID']) | |
| 2708 self.assertEqual(2, len(s['Instances'])) | |
| 39 | 2709 self.assertEqual(2, s['ExpectedNumberOfInstances']) |
| 2710 self.assertEqual('Complete', s['Status']) | |
| 40 | 2711 |
| 2712 a = DoGet(_REMOTE, '/instances/%s/tags?simplify' % s['Instances'][0]) | |
| 2713 b = DoGet(_REMOTE, '/instances/%s/tags?simplify' % s['Instances'][1]) | |
| 2714 self.assertTrue('ImageComments' in a or 'ImageComments' in b) | |
| 2715 if 'ImageComments' in a: | |
| 2716 self.assertEqual('Tutu', a['ImageComments']) | |
| 2717 else: | |
| 2718 self.assertEqual('Tutu', b['ImageComments']) | |
| 2719 | |
| 2720 patient = DoGet(_REMOTE, '/instances/%s/patient' % s['Instances'][0]) | |
| 2721 self.assertEqual(patient['MainDicomTags']['PatientName'].encode('utf-8'), | |
| 2722 'Sébastien Jodogne') | |
| 47 | 2723 |
| 2724 | |
| 2725 def test_create_binary(self): | |
| 2726 binary = ''.join(map(chr, range(256))) | |
| 2727 encoded = 'data:application/octet-stream;base64,' + base64.b64encode(binary) | |
| 2728 tags = { | |
| 2729 'PatientName' : 'Jodogne', | |
| 2730 '8899-8899' : encoded | |
| 2731 } | |
| 2732 | |
| 2733 i = DoPost(_REMOTE, '/tools/create-dicom', | |
| 2734 json.dumps({ | |
| 266 | 2735 'Tags' : tags, |
| 2736 'PrivateCreator' : 'TestBinary', | |
| 47 | 2737 })) |
| 2738 | |
| 2739 self.assertEqual('Jodogne', DoGet(_REMOTE, '/instances/%s/content/PatientName' % i['ID']).strip()) | |
| 2740 self.assertEqual(binary, DoGet(_REMOTE, '/instances/%s/content/8899-8899' % i['ID']).strip()) | |
| 2741 | |
| 2742 i = DoPost(_REMOTE, '/tools/create-dicom', | |
| 2743 json.dumps({ | |
| 2744 'InterpretBinaryTags' : False, | |
| 266 | 2745 'Tags' : tags, |
| 2746 'PrivateCreator' : 'TestBinary', | |
| 47 | 2747 })) |
| 2748 | |
| 2749 self.assertEqual('Jodogne', DoGet(_REMOTE, '/instances/%s/content/PatientName' % i['ID']).strip()) | |
| 2750 self.assertEqual(encoded, DoGet(_REMOTE, '/instances/%s/content/8899-8899' % i['ID'])[0:-1]) | |
|
48
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47
diff
changeset
|
2751 |
|
e4352463ff74
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47
diff
changeset
|
2752 |
|
e4352463ff74
test_patient_ids_collision
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47
diff
changeset
|
2753 def test_patient_ids_collision(self): |
|
e4352463ff74
test_patient_ids_collision
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
47
diff
changeset
|
2754 # Upload 3 instances from 3 different studies, but with the |
|
e4352463ff74
test_patient_ids_collision
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
47
diff
changeset
|
2755 # same PatientID |
|
e4352463ff74
test_patient_ids_collision
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
47
diff
changeset
|
2756 for i in range(3): |
|
e4352463ff74
test_patient_ids_collision
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
47
diff
changeset
|
2757 UploadInstance(_REMOTE, 'PatientIdsCollision/Image%d.dcm' % (i + 1)) |
|
e4352463ff74
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parents:
47
diff
changeset
|
2758 |
|
e4352463ff74
test_patient_ids_collision
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
47
diff
changeset
|
2759 a = DoPost(_REMOTE, '/tools/find', { 'Level' : 'Patient', |
|
e4352463ff74
test_patient_ids_collision
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
47
diff
changeset
|
2760 'Query' : { 'PatientName' : '*' }}) |
|
e4352463ff74
test_patient_ids_collision
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
47
diff
changeset
|
2761 self.assertEqual(1, len(a)) |
|
e4352463ff74
test_patient_ids_collision
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
47
diff
changeset
|
2762 self.assertEqual('COMMON', DoGet(_REMOTE, '/patients/%s' % a[0]) ['MainDicomTags']['PatientID']) |
|
e4352463ff74
test_patient_ids_collision
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
47
diff
changeset
|
2763 |
|
e4352463ff74
test_patient_ids_collision
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
47
diff
changeset
|
2764 a = DoPost(_REMOTE, '/tools/find', { 'Level' : 'Study', |
|
e4352463ff74
test_patient_ids_collision
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
47
diff
changeset
|
2765 'CaseSensitive' : True, |
|
e4352463ff74
test_patient_ids_collision
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
47
diff
changeset
|
2766 'Query' : { 'PatientName' : 'FOO\\HELLO' }}) |
|
e4352463ff74
test_patient_ids_collision
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
47
diff
changeset
|
2767 self.assertEqual(2, len(a)) |
|
e4352463ff74
test_patient_ids_collision
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
47
diff
changeset
|
2768 |
|
e4352463ff74
test_patient_ids_collision
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
47
diff
changeset
|
2769 a = DoPost(_REMOTE, '/tools/find', { 'Level' : 'Series', |
|
e4352463ff74
test_patient_ids_collision
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
47
diff
changeset
|
2770 'CaseSensitive' : False, |
|
e4352463ff74
test_patient_ids_collision
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
47
diff
changeset
|
2771 'Query' : { 'PatientName' : 'Foo' }}) |
|
e4352463ff74
test_patient_ids_collision
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
47
diff
changeset
|
2772 self.assertEqual(1, len(a)) |
|
e4352463ff74
test_patient_ids_collision
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
47
diff
changeset
|
2773 self.assertEqual('FOO^SERIES', DoGet(_REMOTE, '/series/%s/study' % a[0]) ['MainDicomTags']['StudyDescription']) |
|
e4352463ff74
test_patient_ids_collision
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
47
diff
changeset
|
2774 self.assertEqual('FOO', DoGet(_REMOTE, '/series/%s/study' % a[0]) ['PatientMainDicomTags']['PatientName']) |
|
e4352463ff74
test_patient_ids_collision
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
47
diff
changeset
|
2775 self.assertEqual('COMMON', DoGet(_REMOTE, '/series/%s/study' % a[0]) ['PatientMainDicomTags']['PatientID']) |
|
e4352463ff74
test_patient_ids_collision
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
47
diff
changeset
|
2776 |
|
e4352463ff74
test_patient_ids_collision
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
47
diff
changeset
|
2777 a = DoPost(_REMOTE, '/tools/find', { 'Level' : 'Study', |
|
e4352463ff74
test_patient_ids_collision
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
47
diff
changeset
|
2778 'Query' : { 'PatientName' : '*' }}) |
|
e4352463ff74
test_patient_ids_collision
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
47
diff
changeset
|
2779 self.assertEqual(3, len(a)) |
|
e4352463ff74
test_patient_ids_collision
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
47
diff
changeset
|
2780 d = map(lambda x: DoGet(_REMOTE, '/studies/%s' % x) ['MainDicomTags']['StudyDescription'], a) |
|
e4352463ff74
test_patient_ids_collision
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
47
diff
changeset
|
2781 self.assertTrue('FOO^SERIES' in d) |
|
e4352463ff74
test_patient_ids_collision
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
47
diff
changeset
|
2782 self.assertTrue('HELLO^SERIES' in d) |
|
e4352463ff74
test_patient_ids_collision
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
47
diff
changeset
|
2783 self.assertTrue('WORLD^SERIES' in d) |
|
e4352463ff74
test_patient_ids_collision
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
47
diff
changeset
|
2784 |
|
e4352463ff74
test_patient_ids_collision
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
47
diff
changeset
|
2785 d = map(lambda x: DoGet(_REMOTE, '/studies/%s' % x) ['PatientMainDicomTags']['PatientID'], a) |
|
e4352463ff74
test_patient_ids_collision
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
47
diff
changeset
|
2786 self.assertEqual(1, len(set(d))) |
|
e4352463ff74
test_patient_ids_collision
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
47
diff
changeset
|
2787 self.assertEqual('COMMON', d[0]) |
|
e4352463ff74
test_patient_ids_collision
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
47
diff
changeset
|
2788 |
|
e4352463ff74
test_patient_ids_collision
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
47
diff
changeset
|
2789 for i in a: |
|
e4352463ff74
test_patient_ids_collision
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
47
diff
changeset
|
2790 d = DoGet(_REMOTE, '/studies/%s' % i) ['MainDicomTags']['StudyDescription'] |
|
e4352463ff74
test_patient_ids_collision
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
47
diff
changeset
|
2791 p = DoGet(_REMOTE, '/studies/%s' % i) ['PatientMainDicomTags']['PatientName'] |
|
e4352463ff74
test_patient_ids_collision
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
47
diff
changeset
|
2792 self.assertEqual('%s^SERIES' % p, d) |
|
49
e7f9b8199545
test_bitbucket_issue_4
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
48
diff
changeset
|
2793 |
|
e7f9b8199545
test_bitbucket_issue_4
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
48
diff
changeset
|
2794 |
|
e7f9b8199545
test_bitbucket_issue_4
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
48
diff
changeset
|
2795 def test_bitbucket_issue_4(self): |
|
e7f9b8199545
test_bitbucket_issue_4
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
48
diff
changeset
|
2796 UploadInstance(_REMOTE, 'Brainix/Epi/IM-0001-0001.dcm') |
|
e7f9b8199545
test_bitbucket_issue_4
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
48
diff
changeset
|
2797 UploadInstance(_REMOTE, 'Brainix/Epi/IM-0001-0002.dcm') |
|
e7f9b8199545
test_bitbucket_issue_4
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
48
diff
changeset
|
2798 UploadInstance(_REMOTE, 'Brainix/Epi/IM-0001-0003.dcm') |
|
e7f9b8199545
test_bitbucket_issue_4
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
48
diff
changeset
|
2799 UploadInstance(_REMOTE, 'Formats/Jpeg.dcm') |
|
e7f9b8199545
test_bitbucket_issue_4
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
48
diff
changeset
|
2800 UploadInstance(_REMOTE, 'Formats/JpegLossless.dcm') |
|
e7f9b8199545
test_bitbucket_issue_4
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
48
diff
changeset
|
2801 UploadInstance(_REMOTE, 'Formats/Rle.dcm') |
|
e7f9b8199545
test_bitbucket_issue_4
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
48
diff
changeset
|
2802 |
|
e7f9b8199545
test_bitbucket_issue_4
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
48
diff
changeset
|
2803 self.assertEqual(0, len(DoGet(_LOCAL, '/instances'))) |
|
e7f9b8199545
test_bitbucket_issue_4
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
48
diff
changeset
|
2804 self.assertEqual(6, len(DoGet(_REMOTE, '/instances'))) |
|
e7f9b8199545
test_bitbucket_issue_4
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
48
diff
changeset
|
2805 |
|
e7f9b8199545
test_bitbucket_issue_4
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
48
diff
changeset
|
2806 p = DoGet(_REMOTE, '/patients') |
|
e7f9b8199545
test_bitbucket_issue_4
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
48
diff
changeset
|
2807 self.assertEqual(2, len(p)) |
|
e7f9b8199545
test_bitbucket_issue_4
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
48
diff
changeset
|
2808 i1 = map(lambda x: x['ID'], DoGet(_REMOTE, '/patients/%s/instances' % p[0])) |
|
e7f9b8199545
test_bitbucket_issue_4
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
48
diff
changeset
|
2809 i2 = map(lambda x: x['ID'], DoGet(_REMOTE, '/patients/%s/instances' % p[1])) |
|
e7f9b8199545
test_bitbucket_issue_4
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
48
diff
changeset
|
2810 self.assertEqual(3, len(i1)) |
|
e7f9b8199545
test_bitbucket_issue_4
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
48
diff
changeset
|
2811 self.assertEqual(3, len(i2)) |
|
e7f9b8199545
test_bitbucket_issue_4
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
48
diff
changeset
|
2812 |
|
e7f9b8199545
test_bitbucket_issue_4
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
48
diff
changeset
|
2813 j = DoPost(_REMOTE, '/modalities/orthanctest/store', i2[0:1] + i1 + i2[1:3]) |
|
e7f9b8199545
test_bitbucket_issue_4
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
48
diff
changeset
|
2814 |
|
e7f9b8199545
test_bitbucket_issue_4
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
48
diff
changeset
|
2815 self.assertEqual(6, len(DoGet(_LOCAL, '/instances'))) |
|
50
8de63d56cf11
test_create_sequence
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
49
diff
changeset
|
2816 |
|
8de63d56cf11
test_create_sequence
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
49
diff
changeset
|
2817 |
|
8de63d56cf11
test_create_sequence
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
49
diff
changeset
|
2818 def test_create_sequence(self): |
|
8de63d56cf11
test_create_sequence
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
49
diff
changeset
|
2819 i = DoPost(_REMOTE, '/tools/create-dicom', |
|
8de63d56cf11
test_create_sequence
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
49
diff
changeset
|
2820 json.dumps({ |
|
8de63d56cf11
test_create_sequence
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
49
diff
changeset
|
2821 'Tags' : { |
|
8de63d56cf11
test_create_sequence
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
49
diff
changeset
|
2822 'SpecificCharacterSet': 'ISO_IR 100', # Encode using Latin1 |
|
8de63d56cf11
test_create_sequence
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
49
diff
changeset
|
2823 'PatientName': 'Jodogne^', |
|
51
264a20a0276d
test_modify_sequence
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
50
diff
changeset
|
2824 'ReferencedStudySequence': GenerateTestSequence(), |
|
50
8de63d56cf11
test_create_sequence
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
49
diff
changeset
|
2825 } |
|
8de63d56cf11
test_create_sequence
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
49
diff
changeset
|
2826 }))['ID'] |
|
8de63d56cf11
test_create_sequence
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
49
diff
changeset
|
2827 |
|
8de63d56cf11
test_create_sequence
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
49
diff
changeset
|
2828 self.assertEqual('Jodogne^', DoGet(_REMOTE, '/instances/%s/content/PatientName' % i)) |
|
8de63d56cf11
test_create_sequence
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
49
diff
changeset
|
2829 self.assertEqual('Hello^', DoGet(_REMOTE, '/instances/%s/content/ReferencedStudySequence/0/StudyDescription' % i)) |
|
8de63d56cf11
test_create_sequence
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
49
diff
changeset
|
2830 self.assertEqual('Toto', DoGet(_REMOTE, '/instances/%s/content/ReferencedStudySequence/0/ReferencedStudySequence/0/StudyDescription' % i)) |
|
8de63d56cf11
test_create_sequence
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
49
diff
changeset
|
2831 self.assertEqual('Tata', DoGet(_REMOTE, '/instances/%s/content/ReferencedStudySequence/0/ReferencedStudySequence/1/StudyDescription' % i)) |
|
8de63d56cf11
test_create_sequence
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
49
diff
changeset
|
2832 self.assertEqual(u'Sébastien^'.encode('latin-1'), |
|
8de63d56cf11
test_create_sequence
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
49
diff
changeset
|
2833 DoGet(_REMOTE, '/instances/%s/content/ReferencedStudySequence/1/StudyDescription' % i)) |
|
51
264a20a0276d
test_modify_sequence
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
50
diff
changeset
|
2834 |
|
264a20a0276d
test_modify_sequence
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
50
diff
changeset
|
2835 |
|
264a20a0276d
test_modify_sequence
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
50
diff
changeset
|
2836 def test_modify_sequence(self): |
|
264a20a0276d
test_modify_sequence
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
50
diff
changeset
|
2837 i = UploadInstance(_REMOTE, 'PrivateTags.dcm')['ID'] |
|
264a20a0276d
test_modify_sequence
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
50
diff
changeset
|
2838 self.assertRaises(Exception, lambda: DoGet(_REMOTE, '/instances/%s/content/ReferencedStudySequence' % i)) |
|
264a20a0276d
test_modify_sequence
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
50
diff
changeset
|
2839 |
|
264a20a0276d
test_modify_sequence
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
50
diff
changeset
|
2840 j = DoPost(_REMOTE, '/instances/%s/modify' % i, |
|
264a20a0276d
test_modify_sequence
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
50
diff
changeset
|
2841 json.dumps({ |
|
264a20a0276d
test_modify_sequence
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
50
diff
changeset
|
2842 "Replace" : { |
|
264a20a0276d
test_modify_sequence
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
50
diff
changeset
|
2843 "PatientName" : "hello", |
|
264a20a0276d
test_modify_sequence
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
50
diff
changeset
|
2844 'ReferencedStudySequence': GenerateTestSequence(), |
|
264a20a0276d
test_modify_sequence
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
50
diff
changeset
|
2845 }, |
|
264a20a0276d
test_modify_sequence
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
50
diff
changeset
|
2846 }), |
|
264a20a0276d
test_modify_sequence
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
50
diff
changeset
|
2847 'application/json') |
|
264a20a0276d
test_modify_sequence
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
50
diff
changeset
|
2848 j = DoPost(_REMOTE, '/instances', j, 'application/dicom')['ID'] |
|
264a20a0276d
test_modify_sequence
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
50
diff
changeset
|
2849 DoDelete(_REMOTE, '/instances/%s' % i) |
|
264a20a0276d
test_modify_sequence
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
50
diff
changeset
|
2850 |
| 52 | 2851 self.assertEqual(2, len(DoGet(_REMOTE, '/instances/%s/content/ReferencedStudySequence' % j))) |
| 2852 | |
| 2853 | |
| 2854 def test_compression(self): | |
| 2855 i = UploadInstance(_REMOTE, 'DummyCT.dcm')['ID'] | |
| 2856 | |
| 2857 data = DoGetRaw(_REMOTE, '/instances/%s/attachments/dicom-as-json/data' % i)[1] | |
| 2858 | |
| 2859 # "StorageCompression" is enabled in the Orthanc to be tested, | |
| 2860 # uncompress the data before running the test | |
| 2861 if DoGet(_REMOTE, '/instances/%s/attachments/dicom-as-json/is-compressed' % i) != 0: | |
| 2862 DoPost(_REMOTE, '/instances/%s/attachments/dicom-as-json/uncompress' % i) | |
| 2863 | |
| 2864 cs = DoGet(_REMOTE, '/statistics')['TotalDiskSize'] | |
| 2865 us = DoGet(_REMOTE, '/statistics')['TotalUncompressedSize'] | |
| 2866 size = DoGet(_REMOTE, '/instances/%s/attachments/dicom-as-json/size' % i) | |
| 2867 md5 = DoGet(_REMOTE, '/instances/%s/attachments/dicom-as-json/md5' % i) | |
| 2868 self.assertEqual(data, DoGetRaw(_REMOTE, '/instances/%s/attachments/dicom-as-json/compressed-data' % i)[1]) | |
| 2869 self.assertEqual(md5, DoGet(_REMOTE, '/instances/%s/attachments/dicom-as-json/compressed-md5' % i)) | |
| 2870 self.assertEqual(size, DoGet(_REMOTE, '/instances/%s/attachments/dicom-as-json/compressed-size' % i)) | |
| 2871 | |
| 2872 ops = DoGet(_REMOTE, '/instances/%s/attachments/dicom-as-json' % i) | |
| 2873 self.assertTrue('compress' in ops) | |
| 2874 self.assertTrue('uncompress' in ops) | |
| 2875 self.assertTrue('is-compressed' in ops) | |
| 2876 self.assertEqual(0, DoGet(_REMOTE, '/instances/%s/attachments/dicom-as-json/is-compressed' % i)) | |
| 2877 DoPost(_REMOTE, '/instances/%s/attachments/dicom-as-json/verify-md5' % i) | |
| 2878 | |
| 2879 DoPost(_REMOTE, '/instances/%s/attachments/dicom-as-json/compress' % i) | |
| 2880 DoPost(_REMOTE, '/instances/%s/attachments/dicom-as-json/verify-md5' % i) | |
| 2881 self.assertEqual(1, DoGet(_REMOTE, '/instances/%s/attachments/dicom-as-json/is-compressed' % i)) | |
| 2882 self.assertLess(cs, DoGet(_REMOTE, '/statistics')['TotalDiskSize']) | |
| 2883 self.assertEqual(us, DoGet(_REMOTE, '/statistics')['TotalUncompressedSize']) | |
| 2884 self.assertGreater(len(data), len(DoGetRaw(_REMOTE, '/instances/%s/attachments/dicom-as-json/compressed-data' % i)[1])) | |
| 2885 self.assertGreater(size, DoGet(_REMOTE, '/instances/%s/attachments/dicom-as-json/compressed-size' % i)) | |
| 2886 self.assertEqual(size, DoGet(_REMOTE, '/instances/%s/attachments/dicom-as-json/size' % i)) | |
| 2887 self.assertEqual(md5, DoGet(_REMOTE, '/instances/%s/attachments/dicom-as-json/md5' % i)) | |
| 2888 self.assertNotEqual(md5, DoGet(_REMOTE, '/instances/%s/attachments/dicom-as-json/compressed-md5' % i)) | |
| 2889 | |
| 2890 DoPost(_REMOTE, '/instances/%s/attachments/dicom-as-json/uncompress' % i) | |
| 2891 DoPost(_REMOTE, '/instances/%s/attachments/dicom-as-json/verify-md5' % i) | |
| 2892 self.assertEqual(0, DoGet(_REMOTE, '/instances/%s/attachments/dicom-as-json/is-compressed' % i)) | |
| 2893 self.assertEqual(data, DoGetRaw(_REMOTE, '/instances/%s/attachments/dicom-as-json/compressed-data' % i)[1]) | |
| 2894 self.assertEqual(size, DoGet(_REMOTE, '/instances/%s/attachments/dicom-as-json/compressed-size' % i)) | |
| 2895 self.assertEqual(size, DoGet(_REMOTE, '/instances/%s/attachments/dicom-as-json/size' % i)) | |
| 2896 self.assertEqual(md5, DoGet(_REMOTE, '/instances/%s/attachments/dicom-as-json/md5' % i)) | |
| 2897 self.assertEqual(md5, DoGet(_REMOTE, '/instances/%s/attachments/dicom-as-json/compressed-md5' % i)) | |
| 2898 self.assertEqual(cs, DoGet(_REMOTE, '/statistics')['TotalDiskSize']) | |
| 2899 self.assertEqual(us, DoGet(_REMOTE, '/statistics')['TotalUncompressedSize']) | |
| 53 | 2900 |
| 2901 | |
| 2902 def test_ordered_slices(self): | |
| 2903 i = UploadInstance(_REMOTE, 'Multiframe.dcm')['ID'] | |
| 2904 s = DoGet(_REMOTE, '/instances/%s' % i)['ParentSeries'] | |
| 2905 o = DoGet(_REMOTE, '/series/%s/ordered-slices' % s) | |
| 2906 self.assertEqual('Sequence', o['Type']) | |
| 2907 self.assertEqual(1, len(o['Dicom'])) | |
| 2908 self.assertEqual('/instances/9e05eb0a-18b6268c-e0d36085-8ddab517-3b5aec02/file', o['Dicom'][0]) | |
| 2909 self.assertEqual(76, len(o['Slices'])) | |
| 2910 for j in range(76): | |
| 2911 self.assertEqual('/instances/9e05eb0a-18b6268c-e0d36085-8ddab517-3b5aec02/frames/%d' % j, o['Slices'][j]) | |
| 2912 | |
| 68 | 2913 self.assertEqual(1, len(o['SlicesShort'])) |
| 2914 self.assertEqual('9e05eb0a-18b6268c-e0d36085-8ddab517-3b5aec02', o['SlicesShort'][0][0]) | |
| 2915 self.assertEqual(0, o['SlicesShort'][0][1]) | |
| 2916 self.assertEqual(76, o['SlicesShort'][0][2]) | |
| 2917 | |
| 53 | 2918 i = UploadInstance(_REMOTE, 'Brainix/Epi/IM-0001-0001.dcm')['ID'] |
| 2919 j = UploadInstance(_REMOTE, 'Brainix/Epi/IM-0001-0002.dcm')['ID'] | |
| 2920 k = UploadInstance(_REMOTE, 'Brainix/Epi/IM-0001-0003.dcm')['ID'] | |
| 2921 s = DoGet(_REMOTE, '/instances/%s' % i)['ParentSeries'] | |
| 2922 o = DoGet(_REMOTE, '/series/%s/ordered-slices' % s) | |
| 2923 | |
| 2924 self.assertEqual('Volume', o['Type']) | |
| 2925 self.assertEqual(3, len(o['Dicom'])) | |
| 2926 self.assertEqual(3, len(o['Slices'])) | |
| 2927 self.assertEqual('/instances/%s/file' % i, o['Dicom'][2]) | |
| 2928 self.assertEqual('/instances/%s/file' % j, o['Dicom'][1]) | |
| 2929 self.assertEqual('/instances/%s/file' % k, o['Dicom'][0]) | |
| 2930 self.assertEqual('/instances/%s/frames/0' % i, o['Slices'][2]) | |
| 2931 self.assertEqual('/instances/%s/frames/0' % j, o['Slices'][1]) | |
| 2932 self.assertEqual('/instances/%s/frames/0' % k, o['Slices'][0]) | |
| 2933 | |
| 68 | 2934 self.assertEqual(3, len(o['SlicesShort'])) |
| 2935 self.assertEqual(k, o['SlicesShort'][0][0]) | |
| 2936 self.assertEqual(0, o['SlicesShort'][0][1]) | |
| 2937 self.assertEqual(1, o['SlicesShort'][0][2]) | |
| 2938 self.assertEqual(j, o['SlicesShort'][1][0]) | |
| 2939 self.assertEqual(0, o['SlicesShort'][1][1]) | |
| 2940 self.assertEqual(1, o['SlicesShort'][1][2]) | |
| 2941 self.assertEqual(i, o['SlicesShort'][2][0]) | |
| 2942 self.assertEqual(0, o['SlicesShort'][2][1]) | |
| 2943 self.assertEqual(1, o['SlicesShort'][2][2]) | |
| 2944 | |
| 53 | 2945 i = UploadInstance(_REMOTE, 'Beaufix/IM-0001-0001.dcm')['ID'] |
| 2946 j = UploadInstance(_REMOTE, 'Beaufix/IM-0001-0002.dcm')['ID'] | |
| 2947 s = DoGet(_REMOTE, '/instances/%s' % i)['ParentSeries'] | |
| 2948 o = DoGet(_REMOTE, '/series/%s/ordered-slices' % s) | |
| 2949 | |
| 2950 self.assertEqual('Sequence', o['Type']) | |
| 2951 self.assertEqual(2, len(o['Dicom'])) | |
| 2952 self.assertEqual(2, len(o['Slices'])) | |
| 2953 self.assertEqual('/instances/%s/file' % i, o['Dicom'][0]) | |
| 2954 self.assertEqual('/instances/%s/file' % j, o['Dicom'][1]) | |
| 2955 self.assertEqual('/instances/%s/frames/0' % i, o['Slices'][0]) | |
| 2956 self.assertEqual('/instances/%s/frames/0' % j, o['Slices'][1]) | |
|
54
c5f8a6b0d85e
test_incoming_movescu_accession
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parents:
53
diff
changeset
|
2957 |
| 68 | 2958 self.assertEqual(2, len(o['SlicesShort'])) |
| 2959 self.assertEqual(i, o['SlicesShort'][0][0]) | |
| 2960 self.assertEqual(0, o['SlicesShort'][0][1]) | |
| 2961 self.assertEqual(1, o['SlicesShort'][0][2]) | |
| 2962 self.assertEqual(j, o['SlicesShort'][1][0]) | |
| 2963 self.assertEqual(0, o['SlicesShort'][1][1]) | |
| 2964 self.assertEqual(1, o['SlicesShort'][1][2]) | |
| 2965 | |
| 2966 | |
|
54
c5f8a6b0d85e
test_incoming_movescu_accession
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
53
diff
changeset
|
2967 |
|
c5f8a6b0d85e
test_incoming_movescu_accession
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parents:
53
diff
changeset
|
2968 def test_incoming_movescu_accession(self): |
|
c5f8a6b0d85e
test_incoming_movescu_accession
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
53
diff
changeset
|
2969 UploadInstance(_REMOTE, 'Knee/T1/IM-0001-0001.dcm') |
|
c5f8a6b0d85e
test_incoming_movescu_accession
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
53
diff
changeset
|
2970 |
|
137
412d5f70447e
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parents:
136
diff
changeset
|
2971 # No matching patient, so no job is created |
|
54
c5f8a6b0d85e
test_incoming_movescu_accession
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
53
diff
changeset
|
2972 self.assertEqual(0, len(DoGet(_LOCAL, '/patients'))) |
|
c5f8a6b0d85e
test_incoming_movescu_accession
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
53
diff
changeset
|
2973 CallMoveScu([ '--study', '-k', '0008,0052=STUDY', '-k', 'AccessionNumber=nope' ]) |
|
c5f8a6b0d85e
test_incoming_movescu_accession
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
53
diff
changeset
|
2974 self.assertEqual(0, len(DoGet(_LOCAL, '/patients'))) |
|
c5f8a6b0d85e
test_incoming_movescu_accession
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
53
diff
changeset
|
2975 CallMoveScu([ '--study', '-k', '0008,0052=PATIENT', '-k', 'AccessionNumber=A10003245599' ]) |
|
c5f8a6b0d85e
test_incoming_movescu_accession
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
53
diff
changeset
|
2976 self.assertEqual(0, len(DoGet(_LOCAL, '/patients'))) |
|
137
412d5f70447e
testing asynchronous c-move
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
136
diff
changeset
|
2977 |
|
412d5f70447e
testing asynchronous c-move
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
136
diff
changeset
|
2978 # 1 Matching patient, track the job |
| 138 | 2979 self.assertTrue(MonitorJob(_REMOTE, lambda: CallMoveScu([ |
| 2980 '--study', | |
| 2981 '-k', '0008,0052=STUDY', | |
| 2982 '-k', 'AccessionNumber=A10003245599' | |
| 2983 ]))) | |
|
137
412d5f70447e
testing asynchronous c-move
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
136
diff
changeset
|
2984 |
|
54
c5f8a6b0d85e
test_incoming_movescu_accession
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
53
diff
changeset
|
2985 self.assertEqual(1, len(DoGet(_LOCAL, '/patients'))) |
|
c5f8a6b0d85e
test_incoming_movescu_accession
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
53
diff
changeset
|
2986 |
| 55 | 2987 |
| 2988 def test_dicom_to_json(self): | |
| 2989 i = UploadInstance(_REMOTE, 'PrivateMDNTags.dcm')['ID'] | |
|
60
cd3c7f70f139
test backward compatibility with Orthanc 0.9.4
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
59
diff
changeset
|
2990 j = UploadInstance(_REMOTE, 'PrivateTags.dcm')['ID'] |
|
cd3c7f70f139
test backward compatibility with Orthanc 0.9.4
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
59
diff
changeset
|
2991 |
|
cd3c7f70f139
test backward compatibility with Orthanc 0.9.4
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
59
diff
changeset
|
2992 t = DoGet(_REMOTE, '/instances/%s/tags?simplify' % i) |
|
cd3c7f70f139
test backward compatibility with Orthanc 0.9.4
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
59
diff
changeset
|
2993 with open(GetDatabasePath('PrivateMDNTagsSimplify.json'), 'r') as f: |
|
80
8466dbfcb22b
fix test against dcmtk 3.6.1
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
79
diff
changeset
|
2994 self.assertTrue(CompareTags(t, json.loads(f.read()), [ |
| 123 | 2995 # Tags for compatibility with DCMTK 3.6.0 |
| 2996 'RETIRED_OtherPatientIDs', | |
| 2997 'OtherPatientIDs', | |
| 2998 'ACR_NEMA_2C_VariablePixelDataGroupLength', | |
|
80
8466dbfcb22b
fix test against dcmtk 3.6.1
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parents:
79
diff
changeset
|
2999 ])) |
| 55 | 3000 |
| 3001 t = DoGet(_REMOTE, '/instances/%s/tags' % i) | |
| 3002 with open(GetDatabasePath('PrivateMDNTagsFull.json'), 'r') as f: | |
|
87
4b24faec842b
test_reconstruct_json2 + test_private_tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
86
diff
changeset
|
3003 self.assertTrue(CompareTags(t, json.loads(f.read()), [ |
|
4b24faec842b
test_reconstruct_json2 + test_private_tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
86
diff
changeset
|
3004 ])) |
| 55 | 3005 |
|
60
cd3c7f70f139
test backward compatibility with Orthanc 0.9.4
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
59
diff
changeset
|
3006 t = DoGet(_REMOTE, '/instances/%s/tags?simplify' % j) |
|
cd3c7f70f139
test backward compatibility with Orthanc 0.9.4
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
59
diff
changeset
|
3007 with open(GetDatabasePath('PrivateTagsSimplify.json'), 'r') as f: |
|
80
8466dbfcb22b
fix test against dcmtk 3.6.1
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
79
diff
changeset
|
3008 self.assertTrue(CompareTags(t, json.loads(f.read()), [ |
|
8466dbfcb22b
fix test against dcmtk 3.6.1
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
79
diff
changeset
|
3009 ])) |
|
60
cd3c7f70f139
test backward compatibility with Orthanc 0.9.4
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
59
diff
changeset
|
3010 |
|
372
e9b03d8f3b78
fix for DCMTK 3.6.6
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
369
diff
changeset
|
3011 |
|
e9b03d8f3b78
fix for DCMTK 3.6.6
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
369
diff
changeset
|
3012 # NB: To get the actual value of the "tags" JSON file, use the |
|
e9b03d8f3b78
fix for DCMTK 3.6.6
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parents:
369
diff
changeset
|
3013 # following command: |
|
e9b03d8f3b78
fix for DCMTK 3.6.6
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
369
diff
changeset
|
3014 # $ curl http://alice:orthanctest@localhost:8042/instances/d29ead49-43e8601d-72f1e922-7de676ee-ea77c2b4/tags |
|
60
cd3c7f70f139
test backward compatibility with Orthanc 0.9.4
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
59
diff
changeset
|
3015 t = DoGet(_REMOTE, '/instances/%s/tags' % j) |
|
cd3c7f70f139
test backward compatibility with Orthanc 0.9.4
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
59
diff
changeset
|
3016 with open(GetDatabasePath('PrivateTagsFull.json'), 'r') as f: |
|
cd3c7f70f139
test backward compatibility with Orthanc 0.9.4
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
59
diff
changeset
|
3017 a = json.loads(f.read()) |
|
378
a4b8450a1158
fix test_storescu_transcoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
377
diff
changeset
|
3018 |
|
a4b8450a1158
fix test_storescu_transcoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
377
diff
changeset
|
3019 # Starting with Orthanc 1.9.1, the DICOM-as-JSON |
|
a4b8450a1158
fix test_storescu_transcoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
377
diff
changeset
|
3020 # attachments are truncated starting with PixelData |
|
a4b8450a1158
fix test_storescu_transcoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
377
diff
changeset
|
3021 if not '7fe1,0010' in t: |
|
a4b8450a1158
fix test_storescu_transcoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
377
diff
changeset
|
3022 del a['7fe1,0010'] |
|
a4b8450a1158
fix test_storescu_transcoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
377
diff
changeset
|
3023 del a['7fe1,1001'] |
|
a4b8450a1158
fix test_storescu_transcoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
377
diff
changeset
|
3024 |
|
65
09fc27e0899a
patch for testing windows builds
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
64
diff
changeset
|
3025 aa = json.dumps(a).replace('2e+022', '2e+22') |
|
372
e9b03d8f3b78
fix for DCMTK 3.6.6
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
369
diff
changeset
|
3026 tt = (json.dumps(t) |
|
e9b03d8f3b78
fix for DCMTK 3.6.6
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
369
diff
changeset
|
3027 .replace('2e+022', '2e+22') |
|
e9b03d8f3b78
fix for DCMTK 3.6.6
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
369
diff
changeset
|
3028 # The "IllegalPrivatePixelSequence" tag was introduced in DCMTK 3.6.6 dictionary |
|
e9b03d8f3b78
fix for DCMTK 3.6.6
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
369
diff
changeset
|
3029 .replace('IllegalPrivatePixelSequence', 'Unknown Tag & Data')) |
|
65
09fc27e0899a
patch for testing windows builds
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
64
diff
changeset
|
3030 self.assertEqual(aa, tt) |
| 57 | 3031 |
| 3032 | |
| 3033 def test_batch_archive(self): | |
| 3034 UploadInstance(_REMOTE, 'Knee/T1/IM-0001-0001.dcm') | |
| 3035 UploadInstance(_REMOTE, 'Knee/T1/IM-0001-0002.dcm') | |
| 3036 UploadInstance(_REMOTE, 'Knee/T2/IM-0001-0001.dcm') | |
| 3037 UploadInstance(_REMOTE, 'Knee/T2/IM-0001-0002.dcm') | |
| 3038 UploadInstance(_REMOTE, 'Brainix/Epi/IM-0001-0001.dcm') | |
| 3039 UploadInstance(_REMOTE, 'Brainix/Epi/IM-0001-0002.dcm') | |
| 3040 UploadInstance(_REMOTE, 'Brainix/Flair/IM-0001-0001.dcm') | |
| 3041 UploadInstance(_REMOTE, 'Brainix/Flair/IM-0001-0002.dcm') | |
| 3042 | |
| 3043 s = DoPost(_REMOTE, '/tools/create-archive', [ ]) | |
| 3044 z = zipfile.ZipFile(StringIO(s), "r") | |
| 3045 self.assertEqual(0, len(z.namelist())) | |
| 3046 | |
| 3047 # One patient | |
| 3048 s = DoPost(_REMOTE, '/tools/create-archive', [ 'ca29faea-b6a0e17f-067743a1-8b778011-a48b2a17' ]) | |
| 3049 z = zipfile.ZipFile(StringIO(s), "r") | |
| 3050 self.assertEqual(4, len(z.namelist())) | |
| 3051 | |
| 3052 # One patient + twice its study + one series from other patient | |
| 3053 s = DoPost(_REMOTE, '/tools/create-archive', [ | |
| 3054 'ca29faea-b6a0e17f-067743a1-8b778011-a48b2a17', | |
| 3055 '0a9b3153-2512774b-2d9580de-1fc3dcf6-3bd83918', | |
| 3056 '1e2c125c-411b8e86-3f4fe68e-a7584dd3-c6da78f0' | |
| 3057 ]) | |
| 3058 z = zipfile.ZipFile(StringIO(s), "r") | |
| 3059 self.assertEqual(6, len(z.namelist())) | |
| 3060 | |
| 3061 # One patient + one series + one instance | |
| 3062 s = DoPost(_REMOTE, '/tools/create-archive', [ | |
| 3063 'ca29faea-b6a0e17f-067743a1-8b778011-a48b2a17', | |
| 3064 '1e2c125c-411b8e86-3f4fe68e-a7584dd3-c6da78f0', | |
| 3065 '1d429ccb-bdcc78a1-7d129d6a-ba4966ed-fe4dbd87' | |
| 3066 ]) | |
| 3067 z = zipfile.ZipFile(StringIO(s), "r") | |
| 3068 self.assertEqual(7, len(z.namelist())) | |
|
59
84378ada15ab
test_decode_brainix_as_jpeg
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
58
diff
changeset
|
3069 |
|
84378ada15ab
test_decode_brainix_as_jpeg
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
58
diff
changeset
|
3070 |
|
84378ada15ab
test_decode_brainix_as_jpeg
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
58
diff
changeset
|
3071 def test_decode_brainix_as_jpeg(self): |
|
84378ada15ab
test_decode_brainix_as_jpeg
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
58
diff
changeset
|
3072 i = UploadInstance(_REMOTE, 'Brainix/Epi/IM-0001-0001.dcm')['ID'] |
|
84378ada15ab
test_decode_brainix_as_jpeg
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parents:
58
diff
changeset
|
3073 |
|
84378ada15ab
test_decode_brainix_as_jpeg
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parents:
58
diff
changeset
|
3074 j = GetImage(_REMOTE, '/instances/%s/preview' % i) |
|
84378ada15ab
test_decode_brainix_as_jpeg
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parents:
58
diff
changeset
|
3075 self.assertEqual('PNG', j.format) |
|
84378ada15ab
test_decode_brainix_as_jpeg
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
58
diff
changeset
|
3076 self.assertEqual(j.size[0], 256) |
|
84378ada15ab
test_decode_brainix_as_jpeg
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
58
diff
changeset
|
3077 self.assertEqual(j.size[1], 256) |
|
84378ada15ab
test_decode_brainix_as_jpeg
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
58
diff
changeset
|
3078 |
|
84378ada15ab
test_decode_brainix_as_jpeg
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
58
diff
changeset
|
3079 j = GetImage(_REMOTE, '/instances/%s/preview' % i, headers = { 'Accept' : '*/*' }) |
|
84378ada15ab
test_decode_brainix_as_jpeg
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
58
diff
changeset
|
3080 self.assertEqual('PNG', j.format) |
|
84378ada15ab
test_decode_brainix_as_jpeg
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
58
diff
changeset
|
3081 |
|
84378ada15ab
test_decode_brainix_as_jpeg
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
58
diff
changeset
|
3082 j = GetImage(_REMOTE, '/instances/%s/preview' % i, headers = { 'Accept' : 'image/*' }) |
|
84378ada15ab
test_decode_brainix_as_jpeg
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
58
diff
changeset
|
3083 self.assertEqual('PNG', j.format) |
|
84378ada15ab
test_decode_brainix_as_jpeg
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
58
diff
changeset
|
3084 |
|
84378ada15ab
test_decode_brainix_as_jpeg
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
58
diff
changeset
|
3085 j = GetImage(_REMOTE, '/instances/%s/preview' % i, headers = { 'Accept' : 'image/png' }) |
|
84378ada15ab
test_decode_brainix_as_jpeg
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
58
diff
changeset
|
3086 self.assertEqual('PNG', j.format) |
|
84378ada15ab
test_decode_brainix_as_jpeg
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
58
diff
changeset
|
3087 |
|
84378ada15ab
test_decode_brainix_as_jpeg
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
58
diff
changeset
|
3088 j = GetImage(_REMOTE, '/instances/%s/preview' % i, headers = { 'Accept' : 'image/jpeg' }) |
|
84378ada15ab
test_decode_brainix_as_jpeg
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
58
diff
changeset
|
3089 self.assertEqual('JPEG', j.format) |
|
84378ada15ab
test_decode_brainix_as_jpeg
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
58
diff
changeset
|
3090 self.assertEqual(j.size[0], 256) |
|
84378ada15ab
test_decode_brainix_as_jpeg
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
58
diff
changeset
|
3091 self.assertEqual(j.size[1], 256) |
|
84378ada15ab
test_decode_brainix_as_jpeg
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
58
diff
changeset
|
3092 |
|
84378ada15ab
test_decode_brainix_as_jpeg
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
58
diff
changeset
|
3093 a = len(DoGet(_REMOTE, '/instances/%s/preview?quality=50' % i, headers = { 'Accept' : 'image/jpeg' })) |
|
84378ada15ab
test_decode_brainix_as_jpeg
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
58
diff
changeset
|
3094 b = len(DoGet(_REMOTE, '/instances/%s/preview' % i, headers = { 'Accept' : 'image/jpeg' })) |
|
84378ada15ab
test_decode_brainix_as_jpeg
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
58
diff
changeset
|
3095 self.assertLess(a, b) |
|
84378ada15ab
test_decode_brainix_as_jpeg
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
58
diff
changeset
|
3096 |
|
84378ada15ab
test_decode_brainix_as_jpeg
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
58
diff
changeset
|
3097 j = GetImage(_REMOTE, '/instances/%s/image-uint8' % i, headers = { 'Accept' : 'image/jpeg' }) |
|
84378ada15ab
test_decode_brainix_as_jpeg
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
58
diff
changeset
|
3098 self.assertEqual('JPEG', j.format) |
|
84378ada15ab
test_decode_brainix_as_jpeg
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
58
diff
changeset
|
3099 |
|
84378ada15ab
test_decode_brainix_as_jpeg
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
58
diff
changeset
|
3100 # 16bit encoding is not supported with JPEG |
|
84378ada15ab
test_decode_brainix_as_jpeg
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
58
diff
changeset
|
3101 self.assertRaises(Exception, lambda: GetImage(_REMOTE, '/instances/%s/image-uint16' % i, headers = { 'Accept' : 'image/jpeg' })) |
|
84378ada15ab
test_decode_brainix_as_jpeg
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
58
diff
changeset
|
3102 self.assertRaises(Exception, lambda: GetImage(_REMOTE, '/instances/%s/image-int16' % i, headers = { 'Accept' : 'image/jpeg' })) |
|
84378ada15ab
test_decode_brainix_as_jpeg
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
58
diff
changeset
|
3103 |
|
84378ada15ab
test_decode_brainix_as_jpeg
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
58
diff
changeset
|
3104 # No matching content type |
|
84378ada15ab
test_decode_brainix_as_jpeg
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
58
diff
changeset
|
3105 self.assertRaises(Exception, lambda: GetImage(_REMOTE, '/instances/%s/preview' % i, headers = { 'Accept' : 'application/pdf' })) |
|
69
83fd88230097
test_media_encodings
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
68
diff
changeset
|
3106 |
|
83fd88230097
test_media_encodings
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
68
diff
changeset
|
3107 |
|
83fd88230097
test_media_encodings
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
68
diff
changeset
|
3108 |
|
83fd88230097
test_media_encodings
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
68
diff
changeset
|
3109 def test_media_encodings(self): |
|
83fd88230097
test_media_encodings
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
68
diff
changeset
|
3110 ascii = UploadInstance(_REMOTE, 'Knee/T1/IM-0001-0001.dcm')['ID'] |
|
83fd88230097
test_media_encodings
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
68
diff
changeset
|
3111 latin1 = UploadInstance(_REMOTE, 'Brainix/Epi/IM-0001-0001.dcm')['ID'] |
|
83fd88230097
test_media_encodings
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
68
diff
changeset
|
3112 latin2 = UploadInstance(_REMOTE, 'MarekLatin2.dcm')['ID'] |
|
83fd88230097
test_media_encodings
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
68
diff
changeset
|
3113 |
|
83fd88230097
test_media_encodings
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
68
diff
changeset
|
3114 tmp = DoPost(_REMOTE, '/tools/create-media', [ascii,latin1,latin2]) |
|
83fd88230097
test_media_encodings
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
68
diff
changeset
|
3115 z = zipfile.ZipFile(StringIO(tmp), "r") |
|
83fd88230097
test_media_encodings
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
68
diff
changeset
|
3116 |
|
83fd88230097
test_media_encodings
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
68
diff
changeset
|
3117 self.assertEqual(4, len(z.namelist())) |
|
83fd88230097
test_media_encodings
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
68
diff
changeset
|
3118 self.assertTrue('IMAGES/IM0' in z.namelist()) |
|
83fd88230097
test_media_encodings
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
68
diff
changeset
|
3119 self.assertTrue('IMAGES/IM1' in z.namelist()) |
|
83fd88230097
test_media_encodings
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
68
diff
changeset
|
3120 self.assertTrue('IMAGES/IM2' in z.namelist()) |
|
83fd88230097
test_media_encodings
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
68
diff
changeset
|
3121 self.assertTrue('DICOMDIR' in z.namelist()) |
|
83fd88230097
test_media_encodings
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
68
diff
changeset
|
3122 |
|
83fd88230097
test_media_encodings
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
68
diff
changeset
|
3123 try: |
|
83fd88230097
test_media_encodings
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
68
diff
changeset
|
3124 os.remove('/tmp/DICOMDIR') |
|
83fd88230097
test_media_encodings
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
68
diff
changeset
|
3125 except: |
|
83fd88230097
test_media_encodings
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
68
diff
changeset
|
3126 # The file does not exist |
|
83fd88230097
test_media_encodings
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
68
diff
changeset
|
3127 pass |
|
83fd88230097
test_media_encodings
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
68
diff
changeset
|
3128 |
|
83fd88230097
test_media_encodings
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
68
diff
changeset
|
3129 z.extract('DICOMDIR', '/tmp') |
|
83fd88230097
test_media_encodings
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
68
diff
changeset
|
3130 a = subprocess.check_output([ FindExecutable('dciodvfy'), '/tmp/DICOMDIR' ], |
|
83fd88230097
test_media_encodings
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
68
diff
changeset
|
3131 stderr = subprocess.STDOUT).split('\n') |
|
83fd88230097
test_media_encodings
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
68
diff
changeset
|
3132 |
|
83fd88230097
test_media_encodings
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
68
diff
changeset
|
3133 a = subprocess.check_output([ FindExecutable('dcentvfy'), '/tmp/DICOMDIR' ], |
|
83fd88230097
test_media_encodings
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
68
diff
changeset
|
3134 stderr = subprocess.STDOUT).split('\n') |
|
83fd88230097
test_media_encodings
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
68
diff
changeset
|
3135 self.assertEqual(1, len(a)) |
|
83fd88230097
test_media_encodings
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
68
diff
changeset
|
3136 self.assertEqual('', a[0]) |
|
83fd88230097
test_media_encodings
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
68
diff
changeset
|
3137 |
|
83fd88230097
test_media_encodings
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
68
diff
changeset
|
3138 a = subprocess.check_output([ FindExecutable('dcm2xml'), '/tmp/DICOMDIR' ]) |
|
83fd88230097
test_media_encodings
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
68
diff
changeset
|
3139 self.assertTrue(re.search('1.3.46.670589.11.17521.5.0.3124.2008081908590448738', a) != None) |
|
83fd88230097
test_media_encodings
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
68
diff
changeset
|
3140 self.assertTrue(re.search('1.3.46.670589.11.0.0.11.4.2.0.8743.5.5396.2006120114333648576', a) != None) |
|
83fd88230097
test_media_encodings
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
68
diff
changeset
|
3141 self.assertTrue(re.search('1.2.826.0.1.3680043.2.1569.1.4.323026757.1700.1399452091.57', a) != None) |
|
83fd88230097
test_media_encodings
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
68
diff
changeset
|
3142 |
|
83fd88230097
test_media_encodings
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
68
diff
changeset
|
3143 os.remove('/tmp/DICOMDIR') |
|
71
48740070cbf1
TDD: tests for ongoing development of counter tags in C-Find
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
70
diff
changeset
|
3144 |
|
48740070cbf1
TDD: tests for ongoing development of counter tags in C-Find
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
70
diff
changeset
|
3145 |
|
48740070cbf1
TDD: tests for ongoing development of counter tags in C-Find
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
70
diff
changeset
|
3146 def test_findscu_counters(self): |
|
48740070cbf1
TDD: tests for ongoing development of counter tags in C-Find
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
70
diff
changeset
|
3147 UploadInstance(_REMOTE, 'Comunix/Ct/IM-0001-0001.dcm') |
|
48740070cbf1
TDD: tests for ongoing development of counter tags in C-Find
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
70
diff
changeset
|
3148 UploadInstance(_REMOTE, 'Comunix/Pet/IM-0001-0001.dcm') |
|
48740070cbf1
TDD: tests for ongoing development of counter tags in C-Find
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
70
diff
changeset
|
3149 UploadInstance(_REMOTE, 'Comunix/Pet/IM-0001-0002.dcm') |
|
48740070cbf1
TDD: tests for ongoing development of counter tags in C-Find
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
70
diff
changeset
|
3150 |
|
48740070cbf1
TDD: tests for ongoing development of counter tags in C-Find
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
70
diff
changeset
|
3151 i = CallFindScu([ '-k', '0008,0052=PATIENT', '-k', 'NumberOfPatientRelatedStudies' ]) |
|
48740070cbf1
TDD: tests for ongoing development of counter tags in C-Find
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
70
diff
changeset
|
3152 s = re.findall('\(0020,1200\).*?\[(.*?)\]', i) |
|
48740070cbf1
TDD: tests for ongoing development of counter tags in C-Find
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
70
diff
changeset
|
3153 self.assertEqual(1, len(s)) |
|
48740070cbf1
TDD: tests for ongoing development of counter tags in C-Find
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
70
diff
changeset
|
3154 self.assertTrue('1 ' in s) |
|
48740070cbf1
TDD: tests for ongoing development of counter tags in C-Find
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
70
diff
changeset
|
3155 |
|
48740070cbf1
TDD: tests for ongoing development of counter tags in C-Find
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
70
diff
changeset
|
3156 i = CallFindScu([ '-k', '0008,0052=PATIENT', '-k', 'NumberOfPatientRelatedSeries' ]) |
|
48740070cbf1
TDD: tests for ongoing development of counter tags in C-Find
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
70
diff
changeset
|
3157 s = re.findall('\(0020,1202\).*?\[(.*?)\]', i) |
|
48740070cbf1
TDD: tests for ongoing development of counter tags in C-Find
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
70
diff
changeset
|
3158 self.assertEqual(1, len(s)) |
|
48740070cbf1
TDD: tests for ongoing development of counter tags in C-Find
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
70
diff
changeset
|
3159 self.assertTrue('2 ' in s) |
|
48740070cbf1
TDD: tests for ongoing development of counter tags in C-Find
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
70
diff
changeset
|
3160 |
|
48740070cbf1
TDD: tests for ongoing development of counter tags in C-Find
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
70
diff
changeset
|
3161 i = CallFindScu([ '-k', '0008,0052=PATIENT', '-k', 'NumberOfPatientRelatedInstances' ]) |
|
48740070cbf1
TDD: tests for ongoing development of counter tags in C-Find
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
70
diff
changeset
|
3162 s = re.findall('\(0020,1204\).*?\[(.*?)\]', i) |
|
48740070cbf1
TDD: tests for ongoing development of counter tags in C-Find
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
70
diff
changeset
|
3163 self.assertEqual(1, len(s)) |
|
48740070cbf1
TDD: tests for ongoing development of counter tags in C-Find
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
70
diff
changeset
|
3164 self.assertTrue('3 ' in s) |
|
48740070cbf1
TDD: tests for ongoing development of counter tags in C-Find
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
70
diff
changeset
|
3165 |
|
48740070cbf1
TDD: tests for ongoing development of counter tags in C-Find
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
70
diff
changeset
|
3166 i = CallFindScu([ '-k', '0008,0052=STUDY', '-k', 'NumberOfStudyRelatedSeries' ]) |
|
48740070cbf1
TDD: tests for ongoing development of counter tags in C-Find
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
70
diff
changeset
|
3167 s = re.findall('\(0020,1206\).*?\[(.*?)\]', i) |
|
48740070cbf1
TDD: tests for ongoing development of counter tags in C-Find
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
70
diff
changeset
|
3168 self.assertEqual(1, len(s)) |
|
48740070cbf1
TDD: tests for ongoing development of counter tags in C-Find
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
70
diff
changeset
|
3169 self.assertTrue('2 ' in s) |
|
48740070cbf1
TDD: tests for ongoing development of counter tags in C-Find
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
70
diff
changeset
|
3170 |
|
48740070cbf1
TDD: tests for ongoing development of counter tags in C-Find
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
70
diff
changeset
|
3171 i = CallFindScu([ '-k', '0008,0052=STUDY', '-k', 'NumberOfStudyRelatedInstances' ]) |
|
48740070cbf1
TDD: tests for ongoing development of counter tags in C-Find
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
70
diff
changeset
|
3172 s = re.findall('\(0020,1208\).*?\[(.*?)\]', i) |
|
48740070cbf1
TDD: tests for ongoing development of counter tags in C-Find
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
70
diff
changeset
|
3173 self.assertEqual(1, len(s)) |
|
48740070cbf1
TDD: tests for ongoing development of counter tags in C-Find
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
70
diff
changeset
|
3174 self.assertTrue('3 ' in s) |
|
48740070cbf1
TDD: tests for ongoing development of counter tags in C-Find
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
70
diff
changeset
|
3175 |
|
48740070cbf1
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diff
changeset
|
3176 i = CallFindScu([ '-k', '0008,0052=SERIES', '-k', 'NumberOfSeriesRelatedInstances' ]) |
|
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parents:
70
diff
changeset
|
3177 s = re.findall('\(0020,1209\).*?\[(.*?)\]', i) |
|
48740070cbf1
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70
diff
changeset
|
3178 self.assertEqual(2, len(s)) |
|
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parents:
70
diff
changeset
|
3179 self.assertTrue('1 ' in s) |
|
48740070cbf1
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70
diff
changeset
|
3180 self.assertTrue('2 ' in s) |
|
48740070cbf1
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parents:
70
diff
changeset
|
3181 |
|
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diff
changeset
|
3182 i = CallFindScu([ '-k', '0008,0052=STUDY', '-k', 'ModalitiesInStudy' ]) |
|
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70
diff
changeset
|
3183 s = re.findall('\(0008,0061\).*?\[(.*?)\]', i) |
|
48740070cbf1
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Sebastien Jodogne <s.jodogne@gmail.com>
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70
diff
changeset
|
3184 self.assertEqual(1, len(s)) |
|
48740070cbf1
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Sebastien Jodogne <s.jodogne@gmail.com>
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70
diff
changeset
|
3185 t = map(lambda x: x.strip(), s[0].split('\\')) |
|
48740070cbf1
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Sebastien Jodogne <s.jodogne@gmail.com>
parents:
70
diff
changeset
|
3186 self.assertTrue('PT' in t) |
|
48740070cbf1
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70
diff
changeset
|
3187 self.assertTrue('CT' in t) |
|
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70
diff
changeset
|
3188 |
|
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diff
changeset
|
3189 i = CallFindScu([ '-k', '0008,0052=STUDY', '-k', 'SOPClassesInStudy' ]) |
|
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70
diff
changeset
|
3190 s = re.findall('\(0008,0062\).*?\[(.*?)\]', i) |
|
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diff
changeset
|
3191 self.assertEqual(1, len(s)) |
|
176
48cc188ffb09
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am@osimis.io
parents:
175
diff
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|
3192 t = map(lambda x: x.strip('\x00'), s[0].split('\\')) |
|
71
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diff
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|
3193 self.assertTrue('1.2.840.10008.5.1.4.1.1.2' in t) |
|
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diff
changeset
|
3194 self.assertTrue('1.2.840.10008.5.1.4.1.1.128' in t) |
|
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diff
changeset
|
3195 |
|
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diff
changeset
|
3196 |
|
78
b89af51797ff
test_decode_transfer_syntax
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parents:
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diff
changeset
|
3197 def test_decode_transfer_syntax(self): |
|
b89af51797ff
test_decode_transfer_syntax
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parents:
74
diff
changeset
|
3198 def Check(t, md5): |
|
b89af51797ff
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parents:
74
diff
changeset
|
3199 i = UploadInstance(_REMOTE, 'TransferSyntaxes/%s.dcm' % t)['ID'] |
|
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parents:
74
diff
changeset
|
3200 |
|
89
74b7b9aed5f8
test TransferSyntax metadata
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diff
changeset
|
3201 if t != '1.2.840.10008.1.2': # This file has no meta header |
|
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87
diff
changeset
|
3202 transferSyntax = DoGet(_REMOTE, '/instances/%s/metadata/TransferSyntax' % i) |
|
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parents:
87
diff
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|
3203 self.assertEqual(t, transferSyntax) |
|
74b7b9aed5f8
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diff
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|
3204 |
|
78
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diff
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|
3205 if md5 == None: |
|
b89af51797ff
test_decode_transfer_syntax
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parents:
74
diff
changeset
|
3206 self.assertRaises(Exception, lambda: DoGet(_REMOTE, '/instances/%s/preview' % i)) |
|
b89af51797ff
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diff
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|
3207 else: |
|
b89af51797ff
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parents:
74
diff
changeset
|
3208 m = ComputeMD5(DoGet(_REMOTE, '/instances/%s/preview' % i)) |
|
b89af51797ff
test_decode_transfer_syntax
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diff
changeset
|
3209 self.assertEqual(m, md5) |
|
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Sebastien Jodogne <s.jodogne@gmail.com>
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74
diff
changeset
|
3210 |
|
b89af51797ff
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74
diff
changeset
|
3211 Check('1.2.840.10008.1.2.1', 'fae08d5415c4c0cd2cdbae4522408631') |
|
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74
diff
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|
3212 Check('1.2.840.10008.1.2.2', 'f3d9784768b8feb54d6a50b6d5c37682') |
| 323 | 3213 Check('1.2.840.10008.1.2.4.50', '496326046974eea718dbc16b997c646b') # TODO - Doesn't work with GDCM 3.0.7 alone |
|
78
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parents:
74
diff
changeset
|
3214 Check('1.2.840.10008.1.2.4.51', 'ccbe75909fe5c9f7361b48416a53fc41') |
|
b89af51797ff
test_decode_transfer_syntax
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parents:
74
diff
changeset
|
3215 Check('1.2.840.10008.1.2.4.57', '7bbefe11d976b1be4e568915c6a82fc3') |
|
b89af51797ff
test_decode_transfer_syntax
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parents:
74
diff
changeset
|
3216 Check('1.2.840.10008.1.2.4.70', '7132cfbc457305b04b59787030c785d2') |
|
b89af51797ff
test_decode_transfer_syntax
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parents:
74
diff
changeset
|
3217 Check('1.2.840.10008.1.2.4.80', '6ff51ae525d362e0d04f550a64075a0e') |
|
b89af51797ff
test_decode_transfer_syntax
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
74
diff
changeset
|
3218 Check('1.2.840.10008.1.2.4.81', '801579ae7cbf28e604ea74f2c99fa2ca') |
|
b89af51797ff
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parents:
74
diff
changeset
|
3219 Check('1.2.840.10008.1.2.5', '6ff51ae525d362e0d04f550a64075a0e') # RLE, supported since Orthanc 1.0.1 |
|
b89af51797ff
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Sebastien Jodogne <s.jodogne@gmail.com>
parents:
74
diff
changeset
|
3220 Check('1.2.840.10008.1.2', 'd54aed9f67a100984b42942cc2e9939b') |
|
299
c2144cf4bd83
HasGdcmPlugin() test
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
293
diff
changeset
|
3221 |
|
c2144cf4bd83
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293
diff
changeset
|
3222 # JPEG2k image, not supported without GDCM plugin |
| 304 | 3223 if not HasGdcmPlugin(_REMOTE): |
|
299
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diff
changeset
|
3224 Check('1.2.840.10008.1.2.4.90', None) |
|
c2144cf4bd83
HasGdcmPlugin() test
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diff
changeset
|
3225 Check('1.2.840.10008.1.2.4.91', None) |
| 79 | 3226 |
| 3227 | |
| 3228 def test_raw_frame(self): | |
| 3229 s = UploadInstance(_REMOTE, 'Issue22.dcm')['ID'] | |
| 3230 self.assertEqual(24, len(DoGet(_REMOTE, '/instances/%s/frames' % s))) | |
| 3231 a = DoGet(_REMOTE, '/instances/%s/frames/0/raw' % s) | |
| 3232 self.assertEqual(512 * 512 * 2, len(a)) | |
| 3233 self.assertEqual(512 * 512 * 2, len(DoGet(_REMOTE, '/instances/%s/frames/23/raw' % s))) | |
| 3234 self.assertRaises(Exception, lambda: DoGet(_REMOTE, '/instances/%s/frames/24/raw' % s)) | |
| 3235 self.assertEqual('1914287dc4d958eca21fdaacfb3482fa', ComputeMD5(a)) | |
| 3236 | |
| 3237 s = UploadInstance(_REMOTE, 'Multiframe.dcm')['ID'] | |
| 3238 self.assertEqual(76, len(DoGet(_REMOTE, '/instances/%s/frames' % s))) | |
| 3239 self.assertEqual(186274, len(DoGet(_REMOTE, '/instances/%s/frames/0/raw' % s))) | |
| 3240 self.assertEqual(189424, len(DoGet(_REMOTE, '/instances/%s/frames/75/raw' % s))) | |
| 3241 self.assertRaises(Exception, lambda: DoGet(_REMOTE, '/instances/%s/frames/76/raw' % s)) | |
| 3242 im = GetImage(_REMOTE, '/instances/%s/frames/0/raw' % s) | |
| 3243 self.assertEqual("L", im.mode) | |
| 3244 self.assertEqual(512, im.size[0]) | |
| 3245 self.assertEqual(512, im.size[1]) | |
| 3246 | |
| 3247 # Test an image with 2 JPEG frames spread over multiple fragments | |
| 3248 s = UploadInstance(_REMOTE, 'LenaTwiceWithFragments.dcm')['ID'] | |
| 3249 self.assertEqual(2, len(DoGet(_REMOTE, '/instances/%s/frames' % s))) | |
| 3250 a = DoGet(_REMOTE, '/instances/%s/frames/0/raw' % s) | |
| 3251 b = DoGet(_REMOTE, '/instances/%s/frames/1/raw' % s) | |
| 3252 self.assertEqual(69214, len(a)) | |
| 3253 self.assertEqual(ComputeMD5(a), ComputeMD5(b)) | |
| 3254 self.assertRaises(Exception, lambda: DoGet(_REMOTE, '/instances/%s/frames/2/raw' % s)) | |
| 3255 im = GetImage(_REMOTE, '/instances/%s/frames/0/raw' % s) | |
| 3256 self.assertEqual("RGB", im.mode) | |
| 3257 self.assertEqual(512, im.size[0]) | |
| 3258 self.assertEqual(512, im.size[1]) | |
| 323 | 3259 im = GetImage(_REMOTE, '/instances/%s/frames/0/preview' % s) # TODO - Doesn't work with GDCM 3.0.7 alone |
| 79 | 3260 self.assertEqual("RGB", im.mode) |
| 3261 self.assertEqual(512, im.size[0]) | |
| 3262 self.assertEqual(512, im.size[1]) | |
| 81 | 3263 |
| 3264 | |
| 3265 | |
| 3266 def test_rest_movescu(self): | |
| 3267 self.assertEqual(0, len(DoGet(_REMOTE, '/patients'))) | |
| 3268 | |
| 3269 # Upload 4 instances | |
| 3270 UploadInstance(_REMOTE, 'Brainix/Flair/IM-0001-0001.dcm') | |
| 3271 UploadInstance(_REMOTE, 'Brainix/Flair/IM-0001-0002.dcm') | |
| 3272 UploadInstance(_REMOTE, 'Brainix/Epi/IM-0001-0001.dcm') | |
| 3273 UploadInstance(_REMOTE, 'Knee/T2/IM-0001-0001.dcm') | |
| 3274 | |
| 3275 self.assertEqual(2, len(DoGet(_REMOTE, '/patients'))) | |
| 3276 for p in DoGet(_REMOTE, '/patients'): | |
| 3277 DoPost(_REMOTE, '/modalities/orthanctest/store', p) | |
| 3278 DoDelete(_REMOTE, '/patients/%s' % p) | |
| 3279 | |
| 3280 self.assertEqual(0, len(DoGet(_REMOTE, '/patients'))) | |
| 3281 | |
| 3282 # Upload instance Brainix/Flair/IM-0001-0001.dcm | |
| 3283 DoPost(_REMOTE, '/modalities/orthanctest/move', { 'Level' : 'Instance', | |
| 3284 'Resources' : [ | |
| 3285 { | |
| 3286 'StudyInstanceUID' : '2.16.840.1.113669.632.20.1211.10000357775', | |
| 3287 'SeriesInstanceUID' : '1.3.46.670589.11.0.0.11.4.2.0.8743.5.5396.2006120114285654497', | |
| 3288 'SOPInstanceUID' : '1.3.46.670589.11.0.0.11.4.2.0.8743.5.5396.2006120114314079549', | |
| 3289 } | |
| 3290 ]}) | |
| 3291 | |
| 3292 # Upload series Brainix/Flair/* | |
| 3293 self.assertEqual(1, len(DoGet(_REMOTE, '/patients'))) | |
| 3294 self.assertEqual(1, len(DoGet(_REMOTE, '/studies'))) | |
| 3295 self.assertEqual(1, len(DoGet(_REMOTE, '/series'))) | |
| 3296 self.assertEqual(1, len(DoGet(_REMOTE, '/instances'))) | |
| 3297 | |
| 3298 DoPost(_REMOTE, '/modalities/orthanctest/move', { 'Level' : 'Series', | |
| 3299 'Resources' : [ | |
| 3300 { | |
| 3301 'StudyInstanceUID' : '2.16.840.1.113669.632.20.1211.10000357775', | |
| 3302 'SeriesInstanceUID' : '1.3.46.670589.11.0.0.11.4.2.0.8743.5.5396.2006120114285654497', | |
| 3303 } | |
| 3304 ]}) | |
| 3305 self.assertEqual(1, len(DoGet(_REMOTE, '/patients'))) | |
| 3306 self.assertEqual(1, len(DoGet(_REMOTE, '/studies'))) | |
| 3307 self.assertEqual(1, len(DoGet(_REMOTE, '/series'))) | |
| 3308 self.assertEqual(2, len(DoGet(_REMOTE, '/instances'))) | |
| 3309 | |
| 3310 # Upload series Brainix/Epi/* | |
| 3311 DoPost(_REMOTE, '/modalities/orthanctest/move', { 'Level' : 'Series', | |
| 3312 'Resources' : [ | |
| 3313 { | |
| 3314 'StudyInstanceUID' : '2.16.840.1.113669.632.20.1211.10000357775', | |
| 3315 'SeriesInstanceUID' : '1.3.46.670589.11.0.0.11.4.2.0.8743.5.5396.2006120114314125550', | |
| 3316 } | |
| 3317 ]}) | |
| 3318 self.assertEqual(1, len(DoGet(_REMOTE, '/patients'))) | |
| 3319 self.assertEqual(1, len(DoGet(_REMOTE, '/studies'))) | |
| 3320 self.assertEqual(2, len(DoGet(_REMOTE, '/series'))) | |
| 3321 self.assertEqual(3, len(DoGet(_REMOTE, '/instances'))) | |
| 3322 | |
| 3323 # Upload study Knee/* | |
| 3324 DoPost(_REMOTE, '/modalities/orthanctest/move', { 'Level' : 'Study', | |
| 3325 'Resources' : [ | |
| 3326 { | |
| 3327 'StudyInstanceUID' : '2.16.840.1.113669.632.20.121711.10000160881', | |
| 3328 } | |
| 3329 ]}) | |
| 3330 self.assertEqual(2, len(DoGet(_REMOTE, '/patients'))) | |
| 3331 self.assertEqual(2, len(DoGet(_REMOTE, '/studies'))) | |
| 3332 self.assertEqual(3, len(DoGet(_REMOTE, '/series'))) | |
| 3333 self.assertEqual(4, len(DoGet(_REMOTE, '/instances'))) | |
| 3334 | |
| 3335 # Reset | |
| 3336 for p in DoGet(_REMOTE, '/patients'): | |
| 3337 DoDelete(_REMOTE, '/patients/%s' % p) | |
| 3338 | |
| 3339 self.assertEqual(0, len(DoGet(_REMOTE, '/patients'))) | |
| 3340 | |
| 3341 | |
| 3342 # Upload all at once | |
| 3343 DoPost(_REMOTE, '/modalities/orthanctest/move', { 'Level' : 'Study', | |
| 3344 'Resources' : [ | |
| 3345 { | |
| 3346 'StudyInstanceUID' : '2.16.840.1.113669.632.20.121711.10000160881', | |
| 3347 }, | |
| 3348 { | |
| 3349 'StudyInstanceUID' : '2.16.840.1.113669.632.20.1211.10000357775', | |
| 3350 } | |
| 3351 ]}) | |
| 3352 self.assertEqual(2, len(DoGet(_REMOTE, '/patients'))) | |
| 3353 self.assertEqual(2, len(DoGet(_REMOTE, '/studies'))) | |
| 3354 self.assertEqual(3, len(DoGet(_REMOTE, '/series'))) | |
| 3355 self.assertEqual(4, len(DoGet(_REMOTE, '/instances'))) | |
| 3356 | |
|
86
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diff
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|
3357 |
|
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diff
changeset
|
3358 |
|
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diff
changeset
|
3359 def test_reconstruct_json(self): |
|
0401ef51f5c1
test_reconstruct_json
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parents:
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diff
changeset
|
3360 self.assertEqual(0, len(DoGet(_REMOTE, '/patients'))) |
|
0401ef51f5c1
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diff
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|
3361 |
|
0401ef51f5c1
test_reconstruct_json
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parents:
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diff
changeset
|
3362 instance = UploadInstance(_REMOTE, 'DummyCT.dcm')['ID'] |
|
0401ef51f5c1
test_reconstruct_json
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diff
changeset
|
3363 first = DoGet(_REMOTE, '/instances/%s/tags' % instance) |
|
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|
3364 |
|
0401ef51f5c1
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83
diff
changeset
|
3365 self.assertEqual('TWINOW', first['0008,1010']['Value']) |
|
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diff
changeset
|
3366 self.assertEqual(2, len(DoGet(_REMOTE, '/instances/%s/attachments' % instance))) |
|
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|
3367 |
|
0401ef51f5c1
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diff
changeset
|
3368 # Cannot delete the "DICOM" attachment |
|
0401ef51f5c1
test_reconstruct_json
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parents:
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diff
changeset
|
3369 self.assertRaises(Exception, lambda: DoDelete(_REMOTE, '/instances/%s/attachments/dicom' % instance)) |
|
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test_reconstruct_json
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changeset
|
3370 |
|
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changeset
|
3371 # Can delete the "DICOM as JSON" attachment |
|
0401ef51f5c1
test_reconstruct_json
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
83
diff
changeset
|
3372 r = DoDelete(_REMOTE, '/instances/%s/attachments/dicom-as-json' % instance) |
|
0401ef51f5c1
test_reconstruct_json
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
83
diff
changeset
|
3373 self.assertTrue(type(r) is dict and len(r) == 0) |
|
0401ef51f5c1
test_reconstruct_json
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
83
diff
changeset
|
3374 |
|
0401ef51f5c1
test_reconstruct_json
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
83
diff
changeset
|
3375 # Only the "DICOM" attachment subsists |
|
0401ef51f5c1
test_reconstruct_json
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
83
diff
changeset
|
3376 self.assertEqual(1, len(DoGet(_REMOTE, '/instances/%s/attachments' % instance))) |
|
0401ef51f5c1
test_reconstruct_json
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
83
diff
changeset
|
3377 |
|
0401ef51f5c1
test_reconstruct_json
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
83
diff
changeset
|
3378 # Cannot manually reconstruct the "DICOM as JSON" attachment |
|
0401ef51f5c1
test_reconstruct_json
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
83
diff
changeset
|
3379 self.assertRaises(Exception, lambda: DoPut(_REMOTE, '/patients/%s/attachments/dicom-as-json' % patient, 'hello')) |
|
0401ef51f5c1
test_reconstruct_json
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
83
diff
changeset
|
3380 |
|
0401ef51f5c1
test_reconstruct_json
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
83
diff
changeset
|
3381 # Transparently reconstruct the "DICOM as JSON" attachment |
|
0401ef51f5c1
test_reconstruct_json
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
83
diff
changeset
|
3382 self.assertRaises(Exception, lambda: DoGet(_REMOTE, '/instances/%s/attachments/dicom-as-json' % instance)) |
|
0401ef51f5c1
test_reconstruct_json
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
83
diff
changeset
|
3383 second = DoGet(_REMOTE, '/instances/%s/tags' % instance) |
|
0401ef51f5c1
test_reconstruct_json
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
83
diff
changeset
|
3384 self.assertEqual(2, len(DoGet(_REMOTE, '/instances/%s/attachments' % instance))) |
|
0401ef51f5c1
test_reconstruct_json
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
83
diff
changeset
|
3385 |
|
0401ef51f5c1
test_reconstruct_json
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
83
diff
changeset
|
3386 third = DoGet(_REMOTE, '/instances/%s/attachments/dicom-as-json/data' % instance) |
|
0401ef51f5c1
test_reconstruct_json
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
83
diff
changeset
|
3387 self.assertEqual(str(first), str(second)) |
|
0401ef51f5c1
test_reconstruct_json
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
83
diff
changeset
|
3388 self.assertEqual(str(first), str(third)) |
|
87
4b24faec842b
test_reconstruct_json2 + test_private_tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
86
diff
changeset
|
3389 |
|
4b24faec842b
test_reconstruct_json2 + test_private_tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
86
diff
changeset
|
3390 |
|
4b24faec842b
test_reconstruct_json2 + test_private_tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
86
diff
changeset
|
3391 def test_reconstruct_json2(self): |
|
4b24faec842b
test_reconstruct_json2 + test_private_tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
86
diff
changeset
|
3392 self.assertEqual(0, len(DoGet(_REMOTE, '/patients'))) |
|
4b24faec842b
test_reconstruct_json2 + test_private_tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
86
diff
changeset
|
3393 |
|
4b24faec842b
test_reconstruct_json2 + test_private_tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
86
diff
changeset
|
3394 a = UploadInstance(_REMOTE, 'Brainix/Flair/IM-0001-0001.dcm')['ID'] |
|
4b24faec842b
test_reconstruct_json2 + test_private_tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
86
diff
changeset
|
3395 b = UploadInstance(_REMOTE, 'Knee/T2/IM-0001-0001.dcm')['ID'] |
|
4b24faec842b
test_reconstruct_json2 + test_private_tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
86
diff
changeset
|
3396 |
|
4b24faec842b
test_reconstruct_json2 + test_private_tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
86
diff
changeset
|
3397 self.assertEqual('BRAINIX', DoGet(_REMOTE, '/instances/%s/tags?simplify' % a)['PatientName']) |
|
4b24faec842b
test_reconstruct_json2 + test_private_tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
86
diff
changeset
|
3398 self.assertEqual('KNEE', DoGet(_REMOTE, '/instances/%s/tags?simplify' % b)['PatientName']) |
|
4b24faec842b
test_reconstruct_json2 + test_private_tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
86
diff
changeset
|
3399 |
|
4b24faec842b
test_reconstruct_json2 + test_private_tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
86
diff
changeset
|
3400 self.assertEqual(2, len(DoGet(_REMOTE, '/instances/%s/attachments' % a))) |
|
4b24faec842b
test_reconstruct_json2 + test_private_tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
86
diff
changeset
|
3401 self.assertEqual(2, len(DoGet(_REMOTE, '/instances/%s/attachments' % b))) |
|
4b24faec842b
test_reconstruct_json2 + test_private_tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
86
diff
changeset
|
3402 |
|
4b24faec842b
test_reconstruct_json2 + test_private_tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
86
diff
changeset
|
3403 DoPost(_REMOTE, '/tools/invalidate-tags', '', 'text/plain') |
|
4b24faec842b
test_reconstruct_json2 + test_private_tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
86
diff
changeset
|
3404 |
|
4b24faec842b
test_reconstruct_json2 + test_private_tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
86
diff
changeset
|
3405 self.assertEqual(1, len(DoGet(_REMOTE, '/instances/%s/attachments' % a))) |
|
4b24faec842b
test_reconstruct_json2 + test_private_tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
86
diff
changeset
|
3406 self.assertEqual(1, len(DoGet(_REMOTE, '/instances/%s/attachments' % b))) |
|
4b24faec842b
test_reconstruct_json2 + test_private_tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
86
diff
changeset
|
3407 |
|
4b24faec842b
test_reconstruct_json2 + test_private_tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
86
diff
changeset
|
3408 self.assertEqual('BRAINIX', DoGet(_REMOTE, '/instances/%s/tags?simplify' % a)['PatientName']) |
|
4b24faec842b
test_reconstruct_json2 + test_private_tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
86
diff
changeset
|
3409 self.assertEqual('KNEE', DoGet(_REMOTE, '/instances/%s/tags?simplify' % b)['PatientName']) |
|
4b24faec842b
test_reconstruct_json2 + test_private_tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
86
diff
changeset
|
3410 |
|
4b24faec842b
test_reconstruct_json2 + test_private_tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
86
diff
changeset
|
3411 self.assertEqual(2, len(DoGet(_REMOTE, '/instances/%s/attachments' % a))) |
|
4b24faec842b
test_reconstruct_json2 + test_private_tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
86
diff
changeset
|
3412 self.assertEqual(2, len(DoGet(_REMOTE, '/instances/%s/attachments' % b))) |
|
4b24faec842b
test_reconstruct_json2 + test_private_tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
86
diff
changeset
|
3413 |
|
4b24faec842b
test_reconstruct_json2 + test_private_tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
86
diff
changeset
|
3414 |
|
4b24faec842b
test_reconstruct_json2 + test_private_tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
86
diff
changeset
|
3415 def test_private_tags(self): |
|
4b24faec842b
test_reconstruct_json2 + test_private_tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
86
diff
changeset
|
3416 i = UploadInstance(_REMOTE, 'PrivateMDNTags.dcm')['ID'] |
|
4b24faec842b
test_reconstruct_json2 + test_private_tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
86
diff
changeset
|
3417 t = DoGet(_REMOTE, '/instances/%s/tags?simplify' % i) |
|
4b24faec842b
test_reconstruct_json2 + test_private_tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
86
diff
changeset
|
3418 self.assertEqual('1.2.840.113704.1.111.6320.1342451261.21', t['PET-CT Multi Modality Name']) |
|
4b24faec842b
test_reconstruct_json2 + test_private_tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
86
diff
changeset
|
3419 self.assertEqual('p37s0_na_ctac.img', t['Original Image Filename']) |
|
4b24faec842b
test_reconstruct_json2 + test_private_tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
86
diff
changeset
|
3420 |
|
92
dbcbffb889da
test_findscu_encoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
89
diff
changeset
|
3421 |
|
dbcbffb889da
test_findscu_encoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
89
diff
changeset
|
3422 def test_findscu_encoding(self): |
|
dbcbffb889da
test_findscu_encoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
89
diff
changeset
|
3423 # Check out ../Database/Encodings/Generate.sh |
|
dbcbffb889da
test_findscu_encoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
89
diff
changeset
|
3424 TEST = u'Test-éüäöòДΘĝדصķћ๛ﾈİ' |
|
dbcbffb889da
test_findscu_encoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
89
diff
changeset
|
3425 ENCODINGS = { |
|
dbcbffb889da
test_findscu_encoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
89
diff
changeset
|
3426 'Arabic' : [ 'ISO_IR 127' ], |
|
dbcbffb889da
test_findscu_encoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
89
diff
changeset
|
3427 'Ascii' : [ 'ISO_IR 6' ], # More accurately, ISO 646 |
|
dbcbffb889da
test_findscu_encoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
89
diff
changeset
|
3428 'Cyrillic' : [ 'ISO_IR 144' ], |
|
dbcbffb889da
test_findscu_encoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
89
diff
changeset
|
3429 'Greek' : [ 'ISO_IR 126' ], |
|
dbcbffb889da
test_findscu_encoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
89
diff
changeset
|
3430 'Hebrew' : [ 'ISO_IR 138' ], |
|
dbcbffb889da
test_findscu_encoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
89
diff
changeset
|
3431 'Japanese' : [ 'ISO_IR 13', 'shift-jis' ], |
|
dbcbffb889da
test_findscu_encoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
89
diff
changeset
|
3432 'Latin1' : [ 'ISO_IR 100' ], |
|
dbcbffb889da
test_findscu_encoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
89
diff
changeset
|
3433 'Latin2' : [ 'ISO_IR 101' ], |
|
dbcbffb889da
test_findscu_encoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
89
diff
changeset
|
3434 'Latin3' : [ 'ISO_IR 109' ], |
|
dbcbffb889da
test_findscu_encoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
89
diff
changeset
|
3435 'Latin4' : [ 'ISO_IR 110' ], |
|
dbcbffb889da
test_findscu_encoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
89
diff
changeset
|
3436 'Latin5' : [ 'ISO_IR 148' ], |
|
dbcbffb889da
test_findscu_encoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
89
diff
changeset
|
3437 'Thai' : [ 'ISO_IR 166', 'tis-620' ], |
|
dbcbffb889da
test_findscu_encoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
89
diff
changeset
|
3438 'Utf8' : [ 'ISO_IR 192' ], |
|
dbcbffb889da
test_findscu_encoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
89
diff
changeset
|
3439 } |
|
dbcbffb889da
test_findscu_encoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
89
diff
changeset
|
3440 |
|
dbcbffb889da
test_findscu_encoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
89
diff
changeset
|
3441 for name in ENCODINGS.iterkeys(): |
|
dbcbffb889da
test_findscu_encoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
89
diff
changeset
|
3442 if len(ENCODINGS[name]) == 1: |
|
dbcbffb889da
test_findscu_encoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
89
diff
changeset
|
3443 ENCODINGS[name].append(name.lower()) |
|
dbcbffb889da
test_findscu_encoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
89
diff
changeset
|
3444 |
|
dbcbffb889da
test_findscu_encoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
89
diff
changeset
|
3445 UploadInstance(_REMOTE, 'Encodings/Lena-utf8.dcm') |
|
dbcbffb889da
test_findscu_encoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
89
diff
changeset
|
3446 |
|
dbcbffb889da
test_findscu_encoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
89
diff
changeset
|
3447 for name in ENCODINGS.iterkeys(): |
|
dbcbffb889da
test_findscu_encoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
89
diff
changeset
|
3448 self.assertEqual(name, DoPut(_REMOTE, '/tools/default-encoding', name)) |
|
dbcbffb889da
test_findscu_encoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
89
diff
changeset
|
3449 self.assertEqual(name, DoGet(_REMOTE, '/tools/default-encoding')) |
|
dbcbffb889da
test_findscu_encoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
89
diff
changeset
|
3450 |
|
dbcbffb889da
test_findscu_encoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
89
diff
changeset
|
3451 i = CallFindScu([ '-k', '0008,0052=STUDY', |
|
dbcbffb889da
test_findscu_encoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
89
diff
changeset
|
3452 '-k', 'SpecificCharacterSet', |
|
dbcbffb889da
test_findscu_encoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
89
diff
changeset
|
3453 '-k', 'PatientName' ]) |
|
dbcbffb889da
test_findscu_encoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
89
diff
changeset
|
3454 |
|
dbcbffb889da
test_findscu_encoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
89
diff
changeset
|
3455 characterSet = re.findall('\(0008,0005\).*?\[(.*?)\]', i) |
|
dbcbffb889da
test_findscu_encoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
89
diff
changeset
|
3456 self.assertEqual(1, len(characterSet)) |
|
dbcbffb889da
test_findscu_encoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
89
diff
changeset
|
3457 self.assertEqual(ENCODINGS[name][0], characterSet[0].strip()) |
|
dbcbffb889da
test_findscu_encoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
89
diff
changeset
|
3458 |
|
dbcbffb889da
test_findscu_encoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
89
diff
changeset
|
3459 patientName = re.findall('\(0010,0010\).*?\[(.*?)\]', i) |
|
dbcbffb889da
test_findscu_encoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
89
diff
changeset
|
3460 self.assertEqual(1, len(patientName)) |
|
dbcbffb889da
test_findscu_encoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
89
diff
changeset
|
3461 |
|
dbcbffb889da
test_findscu_encoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
89
diff
changeset
|
3462 expected = TEST.encode(ENCODINGS[name][1], 'ignore') |
|
dbcbffb889da
test_findscu_encoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
89
diff
changeset
|
3463 self.assertEqual(expected, patientName[0].strip()) |
|
dbcbffb889da
test_findscu_encoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
89
diff
changeset
|
3464 |
|
dbcbffb889da
test_findscu_encoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
89
diff
changeset
|
3465 |
|
dbcbffb889da
test_findscu_encoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
89
diff
changeset
|
3466 #for master in ENCODINGS: |
|
dbcbffb889da
test_findscu_encoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
89
diff
changeset
|
3467 for master in [ 'Latin1', 'Utf8', 'Cyrillic' ]: # Shortcut to speedup tests |
|
dbcbffb889da
test_findscu_encoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
89
diff
changeset
|
3468 self.assertEqual(master, DoPut(_REMOTE, '/tools/default-encoding', master)) |
|
dbcbffb889da
test_findscu_encoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
89
diff
changeset
|
3469 self.assertEqual(master, DoGet(_REMOTE, '/tools/default-encoding')) |
|
dbcbffb889da
test_findscu_encoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
89
diff
changeset
|
3470 |
|
dbcbffb889da
test_findscu_encoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
89
diff
changeset
|
3471 for name in ENCODINGS: |
|
dbcbffb889da
test_findscu_encoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
89
diff
changeset
|
3472 DropOrthanc(_REMOTE) |
|
dbcbffb889da
test_findscu_encoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
89
diff
changeset
|
3473 UploadInstance(_REMOTE, 'Encodings/Lena-%s.dcm' % ENCODINGS[name][1]) |
|
dbcbffb889da
test_findscu_encoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
89
diff
changeset
|
3474 |
|
dbcbffb889da
test_findscu_encoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
89
diff
changeset
|
3475 i = CallFindScu([ '-k', '0008,0052=STUDY', |
|
dbcbffb889da
test_findscu_encoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
89
diff
changeset
|
3476 '-k', 'PatientID', |
|
dbcbffb889da
test_findscu_encoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
89
diff
changeset
|
3477 '-k', 'SpecificCharacterSet', |
|
dbcbffb889da
test_findscu_encoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
89
diff
changeset
|
3478 '-k', 'PatientName' ]) |
|
dbcbffb889da
test_findscu_encoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
89
diff
changeset
|
3479 i = i.decode(ENCODINGS[master][1]) |
|
dbcbffb889da
test_findscu_encoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
89
diff
changeset
|
3480 |
|
dbcbffb889da
test_findscu_encoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
89
diff
changeset
|
3481 characterSet = re.findall('\(0008,0005\).*?\[(.*?)\]', i) |
|
dbcbffb889da
test_findscu_encoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
89
diff
changeset
|
3482 self.assertEqual(1, len(characterSet)) |
|
dbcbffb889da
test_findscu_encoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
89
diff
changeset
|
3483 self.assertEqual(ENCODINGS[master][0], characterSet[0].strip()) |
|
dbcbffb889da
test_findscu_encoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
89
diff
changeset
|
3484 |
|
dbcbffb889da
test_findscu_encoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
89
diff
changeset
|
3485 patientId = re.findall('\(0010,0020\).*?\[(.*?)\]', i) |
|
dbcbffb889da
test_findscu_encoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
89
diff
changeset
|
3486 self.assertEqual(1, len(patientId)) |
|
dbcbffb889da
test_findscu_encoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
89
diff
changeset
|
3487 self.assertEqual(ENCODINGS[name][1], patientId[0].strip()) |
|
dbcbffb889da
test_findscu_encoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
89
diff
changeset
|
3488 |
|
dbcbffb889da
test_findscu_encoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
89
diff
changeset
|
3489 patientName = re.findall('\(0010,0010\).*?\[(.*?)\]', i) |
|
dbcbffb889da
test_findscu_encoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
89
diff
changeset
|
3490 self.assertEqual(1, len(patientName)) |
|
dbcbffb889da
test_findscu_encoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
89
diff
changeset
|
3491 |
|
dbcbffb889da
test_findscu_encoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
89
diff
changeset
|
3492 tmp = ENCODINGS[name][1] |
|
dbcbffb889da
test_findscu_encoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
89
diff
changeset
|
3493 expected = TEST.encode(tmp, 'ignore').decode(tmp) |
|
dbcbffb889da
test_findscu_encoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
89
diff
changeset
|
3494 tmp = ENCODINGS[master][1] |
|
dbcbffb889da
test_findscu_encoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
89
diff
changeset
|
3495 expected = expected.encode(tmp, 'ignore').decode(tmp) |
|
dbcbffb889da
test_findscu_encoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
89
diff
changeset
|
3496 |
|
dbcbffb889da
test_findscu_encoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
89
diff
changeset
|
3497 self.assertEqual(expected, patientName[0].strip()) |
|
dbcbffb889da
test_findscu_encoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
89
diff
changeset
|
3498 |
|
dbcbffb889da
test_findscu_encoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
89
diff
changeset
|
3499 |
|
dbcbffb889da
test_findscu_encoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
89
diff
changeset
|
3500 a = DoPost(_REMOTE, '/tools/find', { 'Expand' : True, |
|
dbcbffb889da
test_findscu_encoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
89
diff
changeset
|
3501 'Level' : 'Study', |
|
dbcbffb889da
test_findscu_encoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
89
diff
changeset
|
3502 'Query' : { }}) |
|
dbcbffb889da
test_findscu_encoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
89
diff
changeset
|
3503 self.assertEqual(1, len(a)) |
|
dbcbffb889da
test_findscu_encoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
89
diff
changeset
|
3504 |
|
dbcbffb889da
test_findscu_encoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
89
diff
changeset
|
3505 tmp = ENCODINGS[name][1] |
|
dbcbffb889da
test_findscu_encoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
89
diff
changeset
|
3506 self.assertEqual(TEST.encode(tmp, 'ignore').decode(tmp), a[0]["PatientMainDicomTags"]["PatientName"]) |
|
96
272d1229cb49
test reconstruction of tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
95
diff
changeset
|
3507 |
| 314 | 3508 # Back to UTF-8 |
| 3509 self.assertEqual('Utf8', DoPut(_REMOTE, '/tools/default-encoding', 'Utf8')) | |
| 3510 | |
|
96
272d1229cb49
test reconstruction of tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
95
diff
changeset
|
3511 |
|
272d1229cb49
test reconstruction of tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
95
diff
changeset
|
3512 def test_reconstruct(self): |
|
272d1229cb49
test reconstruction of tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
95
diff
changeset
|
3513 def CompareMainDicomTag(expected, instance, level, tag): |
|
272d1229cb49
test reconstruction of tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
95
diff
changeset
|
3514 self.assertEqual(expected, DoGet(_REMOTE, '/instances/%s/%s' % (instance, level))['MainDicomTags'][tag].strip()) |
|
272d1229cb49
test reconstruction of tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
95
diff
changeset
|
3515 |
|
272d1229cb49
test reconstruction of tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
95
diff
changeset
|
3516 a = UploadInstance(_REMOTE, 'DummyCT.dcm')['ID'] |
|
272d1229cb49
test reconstruction of tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
95
diff
changeset
|
3517 |
|
272d1229cb49
test reconstruction of tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
95
diff
changeset
|
3518 studies = DoGet(_REMOTE, '/studies/') |
|
272d1229cb49
test reconstruction of tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
95
diff
changeset
|
3519 self.assertEqual(1, len(DoGet(_REMOTE, '/patients/'))) |
|
272d1229cb49
test reconstruction of tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
95
diff
changeset
|
3520 self.assertEqual(1, len(studies)) |
|
272d1229cb49
test reconstruction of tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
95
diff
changeset
|
3521 self.assertEqual(1, len(DoGet(_REMOTE, '/series/'))) |
|
272d1229cb49
test reconstruction of tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
95
diff
changeset
|
3522 self.assertEqual(1, len(DoGet(_REMOTE, '/instances/'))) |
|
272d1229cb49
test reconstruction of tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
95
diff
changeset
|
3523 |
|
272d1229cb49
test reconstruction of tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
95
diff
changeset
|
3524 modified = DoPost(_REMOTE, '/studies/%s/modify' % studies[0], { |
|
272d1229cb49
test reconstruction of tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
95
diff
changeset
|
3525 "Replace" : { |
|
272d1229cb49
test reconstruction of tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
95
diff
changeset
|
3526 "StudyDescription" : "hello", |
|
272d1229cb49
test reconstruction of tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
95
diff
changeset
|
3527 "SeriesDescription" : "world", |
|
272d1229cb49
test reconstruction of tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
95
diff
changeset
|
3528 "SOPClassUID" : "test", |
|
272d1229cb49
test reconstruction of tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
95
diff
changeset
|
3529 "SOPInstanceUID" : "myid", |
|
272d1229cb49
test reconstruction of tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
95
diff
changeset
|
3530 }, |
| 119 | 3531 "Keep" : [ "StudyInstanceUID", "SeriesInstanceUID" ], |
| 3532 "Force" : True | |
|
96
272d1229cb49
test reconstruction of tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
95
diff
changeset
|
3533 }) |
|
272d1229cb49
test reconstruction of tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
95
diff
changeset
|
3534 |
|
272d1229cb49
test reconstruction of tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
95
diff
changeset
|
3535 instances = DoGet(_REMOTE, '/instances/') |
|
272d1229cb49
test reconstruction of tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
95
diff
changeset
|
3536 self.assertEqual(1, len(DoGet(_REMOTE, '/patients/'))) |
|
272d1229cb49
test reconstruction of tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
95
diff
changeset
|
3537 self.assertEqual(1, len(DoGet(_REMOTE, '/studies/'))) |
|
272d1229cb49
test reconstruction of tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
95
diff
changeset
|
3538 self.assertEqual(1, len(DoGet(_REMOTE, '/series/'))) |
|
272d1229cb49
test reconstruction of tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
95
diff
changeset
|
3539 self.assertEqual(2, len(instances)) |
|
272d1229cb49
test reconstruction of tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
95
diff
changeset
|
3540 |
|
272d1229cb49
test reconstruction of tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
95
diff
changeset
|
3541 b = instances[0] if instances[1] == a else instances[1] |
|
272d1229cb49
test reconstruction of tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
95
diff
changeset
|
3542 |
|
272d1229cb49
test reconstruction of tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
95
diff
changeset
|
3543 CompareMainDicomTag('Knee (R)', a, 'study', 'StudyDescription') |
|
272d1229cb49
test reconstruction of tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
95
diff
changeset
|
3544 CompareMainDicomTag('AX. FSE PD', a, 'series', 'SeriesDescription') |
|
272d1229cb49
test reconstruction of tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
95
diff
changeset
|
3545 CompareMainDicomTag('1.2.840.113619.2.176.2025.1499492.7040.1171286242.109', a, '', 'SOPInstanceUID') |
|
272d1229cb49
test reconstruction of tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
95
diff
changeset
|
3546 CompareMainDicomTag('myid', b, '', 'SOPInstanceUID') |
|
272d1229cb49
test reconstruction of tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
95
diff
changeset
|
3547 self.assertEqual('1.2.840.10008.5.1.4.1.1.4', DoGet(_REMOTE, '/instances/%s/metadata/SopClassUid' % a).strip()) |
|
272d1229cb49
test reconstruction of tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
95
diff
changeset
|
3548 self.assertEqual('test', DoGet(_REMOTE, '/instances/%s/metadata/SopClassUid' % b).strip()) |
|
272d1229cb49
test reconstruction of tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
95
diff
changeset
|
3549 |
|
272d1229cb49
test reconstruction of tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
95
diff
changeset
|
3550 DoPost(_REMOTE, '/instances/%s/reconstruct' % b, {}) |
|
272d1229cb49
test reconstruction of tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
95
diff
changeset
|
3551 |
|
272d1229cb49
test reconstruction of tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
95
diff
changeset
|
3552 CompareMainDicomTag('hello', a, 'study', 'StudyDescription') |
|
272d1229cb49
test reconstruction of tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
95
diff
changeset
|
3553 CompareMainDicomTag('world', a, 'series', 'SeriesDescription') |
|
272d1229cb49
test reconstruction of tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
95
diff
changeset
|
3554 CompareMainDicomTag('1.2.840.113619.2.176.2025.1499492.7040.1171286242.109', a, '', 'SOPInstanceUID') |
| 102 | 3555 |
| 104 | 3556 def test_httpClient_lua(self): |
| 3557 with open(GetDatabasePath('Lua/HttpClient.lua'), 'r') as f: | |
| 102 | 3558 result = DoPost(_REMOTE, '/tools/execute-script', f.read(), 'application/lua') |
| 3559 | |
| 3560 self.assertIn('OK', result) | |
|
107
fddb35f7289d
test_bitbucket_issue_44
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
104
diff
changeset
|
3561 |
|
fddb35f7289d
test_bitbucket_issue_44
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
104
diff
changeset
|
3562 |
|
fddb35f7289d
test_bitbucket_issue_44
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
104
diff
changeset
|
3563 def test_bitbucket_issue_44(self): |
| 319 | 3564 # https://bugs.orthanc-server.com/show_bug.cgi?id=44 |
|
107
fddb35f7289d
test_bitbucket_issue_44
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
104
diff
changeset
|
3565 UploadInstance(_REMOTE, 'Issue44/Monochrome1.dcm') |
|
fddb35f7289d
test_bitbucket_issue_44
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
104
diff
changeset
|
3566 UploadInstance(_REMOTE, 'Issue44/Monochrome2.dcm') |
|
fddb35f7289d
test_bitbucket_issue_44
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
104
diff
changeset
|
3567 |
|
fddb35f7289d
test_bitbucket_issue_44
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
104
diff
changeset
|
3568 # dcmcjpeg +ua +eb Monochrome1.dcm Monochrome1-Jpeg.dcm |
|
fddb35f7289d
test_bitbucket_issue_44
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
104
diff
changeset
|
3569 UploadInstance(_REMOTE, 'Issue44/Monochrome1-Jpeg.dcm') |
|
fddb35f7289d
test_bitbucket_issue_44
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
104
diff
changeset
|
3570 |
|
fddb35f7289d
test_bitbucket_issue_44
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
104
diff
changeset
|
3571 # dcmcjpeg +ua Monochrome1.dcm Monochrome1-JpegLS.dcm |
|
fddb35f7289d
test_bitbucket_issue_44
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
104
diff
changeset
|
3572 UploadInstance(_REMOTE, 'Issue44/Monochrome1-JpegLS.dcm') |
|
fddb35f7289d
test_bitbucket_issue_44
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
104
diff
changeset
|
3573 |
|
fddb35f7289d
test_bitbucket_issue_44
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
104
diff
changeset
|
3574 monochrome1 = 'bcdd600a-a6a9c522-5f0a6e84-8657c9f3-b76e59b7' |
|
fddb35f7289d
test_bitbucket_issue_44
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
104
diff
changeset
|
3575 monochrome1_jpeg = '9df82121-208a2da8-0038674a-3d7a773b-b7008cd2' |
|
fddb35f7289d
test_bitbucket_issue_44
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
104
diff
changeset
|
3576 monochrome1_jpegls = '0486d1a2-9165573f-b1976b20-e927b016-6b8d67ab' |
|
fddb35f7289d
test_bitbucket_issue_44
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
104
diff
changeset
|
3577 monochrome2 = 'f00947b7-f61f7164-c93414d1-c6fbda6a-9e92ed20' |
|
fddb35f7289d
test_bitbucket_issue_44
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
104
diff
changeset
|
3578 |
|
fddb35f7289d
test_bitbucket_issue_44
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
104
diff
changeset
|
3579 for i in [ monochrome1, monochrome1_jpeg, monochrome1_jpegls ]: |
|
fddb35f7289d
test_bitbucket_issue_44
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
104
diff
changeset
|
3580 im = GetImage(_REMOTE, '/instances/%s/preview' % i) |
|
fddb35f7289d
test_bitbucket_issue_44
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
104
diff
changeset
|
3581 self.assertEqual("L", im.mode) |
|
fddb35f7289d
test_bitbucket_issue_44
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
104
diff
changeset
|
3582 self.assertEqual(2010, im.size[0]) |
|
fddb35f7289d
test_bitbucket_issue_44
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
104
diff
changeset
|
3583 self.assertEqual(2446, im.size[1]) |
|
fddb35f7289d
test_bitbucket_issue_44
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
104
diff
changeset
|
3584 |
|
fddb35f7289d
test_bitbucket_issue_44
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
104
diff
changeset
|
3585 # This is the chest image, with MONOCHROME1. Raw background is |
|
fddb35f7289d
test_bitbucket_issue_44
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
104
diff
changeset
|
3586 # white (255), should be rendered as black (0) => invert |
|
fddb35f7289d
test_bitbucket_issue_44
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
104
diff
changeset
|
3587 if i == monochrome1_jpeg: |
|
fddb35f7289d
test_bitbucket_issue_44
Sebastien Jodogne <s.jodogne@gmail.com>
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104
diff
changeset
|
3588 # Add some tolerance because of JPEG destructive compression |
|
fddb35f7289d
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Sebastien Jodogne <s.jodogne@gmail.com>
parents:
104
diff
changeset
|
3589 self.assertGreater(10, im.getpixel((0,0))) |
|
fddb35f7289d
test_bitbucket_issue_44
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
104
diff
changeset
|
3590 else: |
|
fddb35f7289d
test_bitbucket_issue_44
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
104
diff
changeset
|
3591 self.assertEqual(0, im.getpixel((0,0))) |
|
fddb35f7289d
test_bitbucket_issue_44
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
104
diff
changeset
|
3592 |
|
fddb35f7289d
test_bitbucket_issue_44
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
104
diff
changeset
|
3593 im = GetImage(_REMOTE, '/instances/%s/preview' % monochrome2) |
|
fddb35f7289d
test_bitbucket_issue_44
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
104
diff
changeset
|
3594 self.assertEqual("L", im.mode) |
|
fddb35f7289d
test_bitbucket_issue_44
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
104
diff
changeset
|
3595 self.assertEqual(1572, im.size[0]) |
|
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test_bitbucket_issue_44
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
104
diff
changeset
|
3596 self.assertEqual(2010, im.size[1]) |
|
fddb35f7289d
test_bitbucket_issue_44
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
104
diff
changeset
|
3597 |
|
fddb35f7289d
test_bitbucket_issue_44
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
104
diff
changeset
|
3598 # This is the key image, with MONOCHROME2. Raw background is |
|
fddb35f7289d
test_bitbucket_issue_44
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
104
diff
changeset
|
3599 # white (255), should be rendered as white (255) |
|
fddb35f7289d
test_bitbucket_issue_44
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
104
diff
changeset
|
3600 self.assertEqual(255, im.getpixel((0,0))) |
|
111
7005cdeeb704
test_bitbucket_issue_42
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
107
diff
changeset
|
3601 |
|
7005cdeeb704
test_bitbucket_issue_42
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
107
diff
changeset
|
3602 |
|
7005cdeeb704
test_bitbucket_issue_42
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
107
diff
changeset
|
3603 def test_bitbucket_issue_42(self): |
| 319 | 3604 # https://bugs.orthanc-server.com/show_bug.cgi?id=42 |
| 123 | 3605 # This test fails on DCMTK 3.6.0, but succeeds in DCMTK 3.6.1 snapshots and DCMTK 3.6.2 |
|
111
7005cdeeb704
test_bitbucket_issue_42
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
107
diff
changeset
|
3606 UploadInstance(_REMOTE, 'Issue42.dcm')['ID'] |
|
7005cdeeb704
test_bitbucket_issue_42
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
107
diff
changeset
|
3607 modified = DoPost(_REMOTE, |
|
7005cdeeb704
test_bitbucket_issue_42
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
107
diff
changeset
|
3608 '/patients/da128605-e040d0c4-310615d2-3475da63-df2d1ef4/modify', |
| 119 | 3609 '{"Replace":{"PatientID":"Hello","PatientName":"Sample patient name"},"Force":true}', |
|
111
7005cdeeb704
test_bitbucket_issue_42
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
107
diff
changeset
|
3610 'application/json') |
|
7005cdeeb704
test_bitbucket_issue_42
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
107
diff
changeset
|
3611 self.assertTrue('PatientID' in modified) |
|
113
3e5934363e76
test_rest_find_limitµ
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
112
diff
changeset
|
3612 |
|
3e5934363e76
test_rest_find_limitµ
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
112
diff
changeset
|
3613 |
|
3e5934363e76
test_rest_find_limitµ
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
112
diff
changeset
|
3614 def test_rest_find_limit(self): |
|
3e5934363e76
test_rest_find_limitµ
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
112
diff
changeset
|
3615 # Check the "Since" and "Limit" parameters in URI "/tools/find" |
| 319 | 3616 # Related to issue 53: https://bugs.orthanc-server.com/show_bug.cgi?id=53 |
|
111
7005cdeeb704
test_bitbucket_issue_42
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
107
diff
changeset
|
3617 |
|
113
3e5934363e76
test_rest_find_limitµ
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
112
diff
changeset
|
3618 # Upload 6 instances |
|
3e5934363e76
test_rest_find_limitµ
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
112
diff
changeset
|
3619 brainix = [] |
|
3e5934363e76
test_rest_find_limitµ
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
112
diff
changeset
|
3620 knee = [] |
|
3e5934363e76
test_rest_find_limitµ
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
112
diff
changeset
|
3621 for i in range(2): |
|
3e5934363e76
test_rest_find_limitµ
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
112
diff
changeset
|
3622 brainix.append(UploadInstance(_REMOTE, 'Brainix/Flair/IM-0001-000%d.dcm' % (i + 1)) ['ID']) |
|
3e5934363e76
test_rest_find_limitµ
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
112
diff
changeset
|
3623 brainix.append(UploadInstance(_REMOTE, 'Brainix/Epi/IM-0001-000%d.dcm' % (i + 1)) ['ID']) |
|
3e5934363e76
test_rest_find_limitµ
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
112
diff
changeset
|
3624 knee.append(UploadInstance(_REMOTE, 'Knee/T1/IM-0001-000%d.dcm' % (i + 1)) ['ID']) |
|
3e5934363e76
test_rest_find_limitµ
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
112
diff
changeset
|
3625 |
|
3e5934363e76
test_rest_find_limitµ
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
112
diff
changeset
|
3626 # Check using BRAINIX |
|
3e5934363e76
test_rest_find_limitµ
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
112
diff
changeset
|
3627 a = DoPost(_REMOTE, '/tools/find', { 'Level' : 'Instance', |
|
3e5934363e76
test_rest_find_limitµ
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
112
diff
changeset
|
3628 'Query' : { 'PatientName' : 'B*' }, |
|
3e5934363e76
test_rest_find_limitµ
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
112
diff
changeset
|
3629 'Limit' : 10 }) |
|
3e5934363e76
test_rest_find_limitµ
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
112
diff
changeset
|
3630 self.assertEqual(4, len(a)) |
|
3e5934363e76
test_rest_find_limitµ
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
112
diff
changeset
|
3631 |
|
3e5934363e76
test_rest_find_limitµ
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
112
diff
changeset
|
3632 a = DoPost(_REMOTE, '/tools/find', { 'Level' : 'Instance', |
|
3e5934363e76
test_rest_find_limitµ
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
112
diff
changeset
|
3633 'Query' : { 'PatientName' : 'B*' }, |
|
3e5934363e76
test_rest_find_limitµ
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
112
diff
changeset
|
3634 'Limit' : 4 }) |
|
3e5934363e76
test_rest_find_limitµ
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
112
diff
changeset
|
3635 self.assertEqual(4, len(a)) |
|
3e5934363e76
test_rest_find_limitµ
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
112
diff
changeset
|
3636 |
|
3e5934363e76
test_rest_find_limitµ
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
112
diff
changeset
|
3637 a = DoPost(_REMOTE, '/tools/find', { 'Level' : 'Instance', |
|
3e5934363e76
test_rest_find_limitµ
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
112
diff
changeset
|
3638 'Query' : { 'PatientName' : 'B*' }, |
|
3e5934363e76
test_rest_find_limitµ
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
112
diff
changeset
|
3639 'Since' : 2, |
|
3e5934363e76
test_rest_find_limitµ
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
112
diff
changeset
|
3640 'Limit' : 4 }) |
|
3e5934363e76
test_rest_find_limitµ
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
112
diff
changeset
|
3641 self.assertEqual(2, len(a)) |
|
3e5934363e76
test_rest_find_limitµ
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
112
diff
changeset
|
3642 |
|
3e5934363e76
test_rest_find_limitµ
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
112
diff
changeset
|
3643 a = DoPost(_REMOTE, '/tools/find', { 'Level' : 'Instance', |
|
3e5934363e76
test_rest_find_limitµ
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
112
diff
changeset
|
3644 'Query' : { 'PatientName' : 'B*' }, |
|
3e5934363e76
test_rest_find_limitµ
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
112
diff
changeset
|
3645 'Limit' : 3 }) |
|
3e5934363e76
test_rest_find_limitµ
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
112
diff
changeset
|
3646 self.assertEqual(3, len(a)) |
|
3e5934363e76
test_rest_find_limitµ
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
112
diff
changeset
|
3647 |
|
3e5934363e76
test_rest_find_limitµ
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
112
diff
changeset
|
3648 b = [] |
|
3e5934363e76
test_rest_find_limitµ
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
112
diff
changeset
|
3649 for i in range(4): |
|
3e5934363e76
test_rest_find_limitµ
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
112
diff
changeset
|
3650 a = DoPost(_REMOTE, '/tools/find', { 'Level' : 'Instance', |
|
3e5934363e76
test_rest_find_limitµ
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
112
diff
changeset
|
3651 'Query' : { 'PatientName' : 'B*' }, |
|
3e5934363e76
test_rest_find_limitµ
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
112
diff
changeset
|
3652 'Limit' : 1, |
|
3e5934363e76
test_rest_find_limitµ
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
112
diff
changeset
|
3653 'Since' : i }) |
|
3e5934363e76
test_rest_find_limitµ
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
112
diff
changeset
|
3654 self.assertEqual(1, len(a)) |
|
3e5934363e76
test_rest_find_limitµ
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
112
diff
changeset
|
3655 b.append(a[0]) |
|
3e5934363e76
test_rest_find_limitµ
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
112
diff
changeset
|
3656 |
|
3e5934363e76
test_rest_find_limitµ
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
112
diff
changeset
|
3657 # Check whether the two sets are equal through symmetric difference |
|
3e5934363e76
test_rest_find_limitµ
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
112
diff
changeset
|
3658 self.assertEqual(0, len(set(b) ^ set(brainix))) |
|
3e5934363e76
test_rest_find_limitµ
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
112
diff
changeset
|
3659 |
|
3e5934363e76
test_rest_find_limitµ
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
112
diff
changeset
|
3660 # Check using KNEE |
|
3e5934363e76
test_rest_find_limitµ
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
112
diff
changeset
|
3661 a = DoPost(_REMOTE, '/tools/find', { 'Level' : 'Instance', |
|
3e5934363e76
test_rest_find_limitµ
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
112
diff
changeset
|
3662 'Query' : { 'PatientName' : 'K*' }, |
|
3e5934363e76
test_rest_find_limitµ
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
112
diff
changeset
|
3663 'Limit' : 10 }) |
|
3e5934363e76
test_rest_find_limitµ
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
112
diff
changeset
|
3664 self.assertEqual(2, len(a)) |
|
3e5934363e76
test_rest_find_limitµ
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
112
diff
changeset
|
3665 |
|
3e5934363e76
test_rest_find_limitµ
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
112
diff
changeset
|
3666 a = DoPost(_REMOTE, '/tools/find', { 'Level' : 'Instance', |
|
3e5934363e76
test_rest_find_limitµ
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
112
diff
changeset
|
3667 'Query' : { 'PatientName' : 'K*' }, |
|
3e5934363e76
test_rest_find_limitµ
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
112
diff
changeset
|
3668 'Limit' : 2 }) |
|
3e5934363e76
test_rest_find_limitµ
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
112
diff
changeset
|
3669 self.assertEqual(2, len(a)) |
|
3e5934363e76
test_rest_find_limitµ
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
112
diff
changeset
|
3670 |
|
3e5934363e76
test_rest_find_limitµ
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
112
diff
changeset
|
3671 b = [] |
|
3e5934363e76
test_rest_find_limitµ
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
112
diff
changeset
|
3672 for i in range(2): |
|
3e5934363e76
test_rest_find_limitµ
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
112
diff
changeset
|
3673 a = DoPost(_REMOTE, '/tools/find', { 'Level' : 'Instance', |
|
3e5934363e76
test_rest_find_limitµ
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
112
diff
changeset
|
3674 'Query' : { 'PatientName' : 'K*' }, |
|
3e5934363e76
test_rest_find_limitµ
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
112
diff
changeset
|
3675 'Limit' : 1, |
|
3e5934363e76
test_rest_find_limitµ
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
112
diff
changeset
|
3676 'Since' : i }) |
|
3e5934363e76
test_rest_find_limitµ
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
112
diff
changeset
|
3677 self.assertEqual(1, len(a)) |
|
3e5934363e76
test_rest_find_limitµ
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
112
diff
changeset
|
3678 b.append(a[0]) |
|
3e5934363e76
test_rest_find_limitµ
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
112
diff
changeset
|
3679 |
|
3e5934363e76
test_rest_find_limitµ
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
112
diff
changeset
|
3680 self.assertEqual(0, len(set(b) ^ set(knee))) |
|
115
45ebfab035b7
test_bitbucket_issue_46
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
113
diff
changeset
|
3681 |
|
45ebfab035b7
test_bitbucket_issue_46
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
113
diff
changeset
|
3682 |
|
45ebfab035b7
test_bitbucket_issue_46
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
113
diff
changeset
|
3683 def test_bitbucket_issue_46(self): |
|
45ebfab035b7
test_bitbucket_issue_46
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parents:
113
diff
changeset
|
3684 # "PHI remaining after anonymization" |
| 319 | 3685 # https://bugs.orthanc-server.com/show_bug.cgi?id=46 |
|
115
45ebfab035b7
test_bitbucket_issue_46
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parents:
113
diff
changeset
|
3686 |
|
45ebfab035b7
test_bitbucket_issue_46
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
113
diff
changeset
|
3687 def GetAnonymizedTags(study, version): |
|
45ebfab035b7
test_bitbucket_issue_46
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
113
diff
changeset
|
3688 anonymized = DoPost(_REMOTE, '/studies/%s/anonymize' % study, |
|
45ebfab035b7
test_bitbucket_issue_46
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
113
diff
changeset
|
3689 { 'DicomVersion' : version }, |
|
45ebfab035b7
test_bitbucket_issue_46
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
113
diff
changeset
|
3690 'application/json') ['ID'] |
|
45ebfab035b7
test_bitbucket_issue_46
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
113
diff
changeset
|
3691 a = DoGet(_REMOTE, '/studies/%s/instances' % anonymized) |
|
45ebfab035b7
test_bitbucket_issue_46
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
113
diff
changeset
|
3692 self.assertEqual(1, len(a)) |
|
45ebfab035b7
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Sebastien Jodogne <s.jodogne@gmail.com>
parents:
113
diff
changeset
|
3693 |
|
45ebfab035b7
test_bitbucket_issue_46
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
113
diff
changeset
|
3694 instance = a[0]['ID'] |
|
45ebfab035b7
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Sebastien Jodogne <s.jodogne@gmail.com>
parents:
113
diff
changeset
|
3695 |
|
45ebfab035b7
test_bitbucket_issue_46
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
113
diff
changeset
|
3696 return (instance, DoGet(_REMOTE, '/instances/%s/tags' % instance)) |
|
45ebfab035b7
test_bitbucket_issue_46
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
113
diff
changeset
|
3697 |
|
45ebfab035b7
test_bitbucket_issue_46
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diff
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|
3698 UploadInstance(_REMOTE, 'Issue44/Monochrome1.dcm') |
|
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diff
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|
3699 origStudy = '6068a14b-d4df27af-9ec22145-538772d8-74f228ff' |
|
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diff
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|
3700 |
|
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diff
changeset
|
3701 # Add the 0032,1033 (Requesting Service) and the 0010,1060 |
|
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diff
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|
3702 # (Patient's Mother's Birth Name) tags |
|
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diff
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|
3703 newStudy = DoPost(_REMOTE, '/studies/%s/modify' % origStudy, |
|
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test_bitbucket_issue_46
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diff
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|
3704 '{"Replace":{"0010,1060":"OSIMIS","0032,1033":"MOTHER"}}', |
|
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test_bitbucket_issue_46
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diff
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|
3705 'application/json')['ID'] |
|
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test_bitbucket_issue_46
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diff
changeset
|
3706 |
|
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113
diff
changeset
|
3707 # Use Table E.1-1 from PS 3.15-2008 |
|
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test_bitbucket_issue_46
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diff
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|
3708 # https://raw.githubusercontent.com/jodogne/dicom-specification/master/2008/08_15pu.pdf |
|
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test_bitbucket_issue_46
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diff
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|
3709 (instance, tags) = GetAnonymizedTags(newStudy, "2008") |
|
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test_bitbucket_issue_46
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parents:
113
diff
changeset
|
3710 self.assertTrue('0032,1033' in tags) |
|
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test_bitbucket_issue_46
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parents:
113
diff
changeset
|
3711 self.assertTrue('0010,1060' in tags) |
|
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test_bitbucket_issue_46
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parents:
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diff
changeset
|
3712 |
|
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test_bitbucket_issue_46
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diff
changeset
|
3713 # Use Table E.1-1 from PS 3.15-2011 (only if Orthanc >= 1.2.1) |
|
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test_bitbucket_issue_46
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parents:
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diff
changeset
|
3714 # https://raw.githubusercontent.com/jodogne/dicom-specification/master/2008/08_15pu.pdf |
|
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test_bitbucket_issue_46
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parents:
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diff
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|
3715 (instance, tags) = GetAnonymizedTags(newStudy, "2017c") |
|
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test_bitbucket_issue_46
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parents:
113
diff
changeset
|
3716 self.assertFalse('0032,1033' in tags) |
|
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test_bitbucket_issue_46
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parents:
113
diff
changeset
|
3717 self.assertFalse('0010,1060' in tags) |
|
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test_bitbucket_issue_46
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parents:
113
diff
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|
3718 |
|
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test_bitbucket_issue_46
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parents:
113
diff
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|
3719 t = {} |
|
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test_bitbucket_issue_46
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diff
changeset
|
3720 for (key, value) in tags.iteritems(): |
|
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diff
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|
3721 t[value['Name']] = value['Value'] |
|
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test_bitbucket_issue_46
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parents:
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diff
changeset
|
3722 |
|
45ebfab035b7
test_bitbucket_issue_46
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parents:
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diff
changeset
|
3723 self.assertEqual('', t['StudyDate']) # Type 1 tag => cleared |
|
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test_bitbucket_issue_46
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diff
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|
3724 self.assertEqual('', t['StudyTime']) # Type 1 tag => cleared |
|
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diff
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|
3725 self.assertEqual('', t['PatientSex']) # Type 1 tag => cleared |
|
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test_bitbucket_issue_46
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parents:
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diff
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|
3726 self.assertFalse('SeriesDate' in t) # Type 3 tag => null |
|
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test_bitbucket_issue_46
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parents:
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diff
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|
3727 self.assertFalse('SeriesTime' in t) # Type 3 tag => null |
|
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test_bitbucket_issue_46
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parents:
113
diff
changeset
|
3728 |
|
45ebfab035b7
test_bitbucket_issue_46
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parents:
113
diff
changeset
|
3729 with tempfile.NamedTemporaryFile(delete = True) as f: |
|
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test_bitbucket_issue_46
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parents:
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diff
changeset
|
3730 # Run "dciodvfy" on the anonymized file to be sure it is still valid |
|
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parents:
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diff
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|
3731 f.write(DoGet(_REMOTE, '/instances/%s/file' % instance)) |
|
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test_bitbucket_issue_46
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diff
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|
3732 f.flush() |
|
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test_bitbucket_issue_46
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parents:
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diff
changeset
|
3733 subprocess.check_output([ FindExecutable('dciodvfy'), f.name ], |
|
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test_bitbucket_issue_46
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parents:
113
diff
changeset
|
3734 stderr = subprocess.STDOUT).split('\n') |
|
118
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test_bitbucket_issue_55
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
117
diff
changeset
|
3735 |
|
a954c535fef6
test_bitbucket_issue_55
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
117
diff
changeset
|
3736 |
|
a954c535fef6
test_bitbucket_issue_55
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parents:
117
diff
changeset
|
3737 def test_bitbucket_issue_55(self): |
|
a954c535fef6
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parents:
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diff
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|
3738 def Run(modify, query): |
|
a954c535fef6
test_bitbucket_issue_55
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parents:
117
diff
changeset
|
3739 self.assertEqual(1, len(DoGet(_REMOTE, '/instances'))) |
|
a954c535fef6
test_bitbucket_issue_55
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parents:
117
diff
changeset
|
3740 |
|
a954c535fef6
test_bitbucket_issue_55
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parents:
117
diff
changeset
|
3741 operation = 'modify' if modify else 'anonymize' |
|
a954c535fef6
test_bitbucket_issue_55
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parents:
117
diff
changeset
|
3742 |
|
a954c535fef6
test_bitbucket_issue_55
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parents:
117
diff
changeset
|
3743 self.assertRaises(Exception, lambda: DoPost( |
|
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test_bitbucket_issue_55
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parents:
117
diff
changeset
|
3744 _REMOTE, '/studies/%s/%s' % (study, operation), query)) |
|
a954c535fef6
test_bitbucket_issue_55
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parents:
117
diff
changeset
|
3745 self.assertEqual(1, len(DoGet(_REMOTE, '/instances'))) |
|
a954c535fef6
test_bitbucket_issue_55
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
117
diff
changeset
|
3746 |
|
a954c535fef6
test_bitbucket_issue_55
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parents:
117
diff
changeset
|
3747 query["Force"] = True |
|
a954c535fef6
test_bitbucket_issue_55
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
117
diff
changeset
|
3748 a = DoPost(_REMOTE, '/studies/%s/%s' % (study, operation), query)['Path'] |
|
a954c535fef6
test_bitbucket_issue_55
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parents:
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diff
changeset
|
3749 self.assertEqual(2, len(DoGet(_REMOTE, '/instances'))) |
|
a954c535fef6
test_bitbucket_issue_55
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parents:
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diff
changeset
|
3750 DoDelete(_REMOTE, a) |
|
a954c535fef6
test_bitbucket_issue_55
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
117
diff
changeset
|
3751 |
|
a954c535fef6
test_bitbucket_issue_55
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
117
diff
changeset
|
3752 self.assertEqual(1, len(DoGet(_REMOTE, '/instances'))) |
|
a954c535fef6
test_bitbucket_issue_55
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
117
diff
changeset
|
3753 |
|
a954c535fef6
test_bitbucket_issue_55
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
117
diff
changeset
|
3754 UploadInstance(_REMOTE, 'DummyCT.dcm') |
|
a954c535fef6
test_bitbucket_issue_55
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
117
diff
changeset
|
3755 study = 'b9c08539-26f93bde-c81ab0d7-bffaf2cb-a4d0bdd0' |
|
a954c535fef6
test_bitbucket_issue_55
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
117
diff
changeset
|
3756 |
|
a954c535fef6
test_bitbucket_issue_55
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
117
diff
changeset
|
3757 Run(True, { "Replace" : { "StudyInstanceUID" : "world" } }) |
|
a954c535fef6
test_bitbucket_issue_55
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parents:
117
diff
changeset
|
3758 Run(True, { "Replace" : { "SeriesInstanceUID" : "world" } }) |
|
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test_bitbucket_issue_55
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parents:
117
diff
changeset
|
3759 Run(True, { "Replace" : { "SOPInstanceUID" : "world" } }) |
|
a954c535fef6
test_bitbucket_issue_55
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
117
diff
changeset
|
3760 |
|
a954c535fef6
test_bitbucket_issue_55
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
117
diff
changeset
|
3761 Run(False, { "Keep" : [ "StudyInstanceUID" ]}) |
|
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test_bitbucket_issue_55
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
117
diff
changeset
|
3762 Run(False, { "Keep" : [ "SeriesInstanceUID" ]}) |
|
a954c535fef6
test_bitbucket_issue_55
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
117
diff
changeset
|
3763 Run(False, { "Keep" : [ "SOPInstanceUID" ]}) |
|
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test_bitbucket_issue_55
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
117
diff
changeset
|
3764 |
|
a954c535fef6
test_bitbucket_issue_55
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
117
diff
changeset
|
3765 Run(False, { "Replace" : { "StudyInstanceUID" : "world" } }) |
|
a954c535fef6
test_bitbucket_issue_55
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
117
diff
changeset
|
3766 Run(False, { "Replace" : { "SeriesInstanceUID" : "world" } }) |
|
a954c535fef6
test_bitbucket_issue_55
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
117
diff
changeset
|
3767 Run(False, { "Replace" : { "SOPInstanceUID" : "world" } }) |
|
a954c535fef6
test_bitbucket_issue_55
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
117
diff
changeset
|
3768 |
|
120
fce08afe6b2d
test_bitbucket_issue_56
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
119
diff
changeset
|
3769 |
|
fce08afe6b2d
test_bitbucket_issue_56
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
119
diff
changeset
|
3770 def test_bitbucket_issue_56(self): |
|
fce08afe6b2d
test_bitbucket_issue_56
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parents:
119
diff
changeset
|
3771 # Case-insensitive matching over accents. This test assumes |
|
fce08afe6b2d
test_bitbucket_issue_56
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
119
diff
changeset
|
3772 # that the "CaseSensitivePN" configuration option of Orthanc |
|
fce08afe6b2d
test_bitbucket_issue_56
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parents:
119
diff
changeset
|
3773 # is set to "false" (default value). |
| 319 | 3774 # https://bugs.orthanc-server.com/show_bug.cgi?id=56 |
|
120
fce08afe6b2d
test_bitbucket_issue_56
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parents:
119
diff
changeset
|
3775 |
|
fce08afe6b2d
test_bitbucket_issue_56
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
119
diff
changeset
|
3776 def Check(name, expected, expectedSensitive): |
|
fce08afe6b2d
test_bitbucket_issue_56
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parents:
119
diff
changeset
|
3777 a = CallFindScu([ '-k', '0008,0005=ISO_IR 192', # Use UTF-8 |
|
fce08afe6b2d
test_bitbucket_issue_56
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119
diff
changeset
|
3778 '-k', '0008,0052=PATIENT', |
|
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test_bitbucket_issue_56
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parents:
119
diff
changeset
|
3779 '-k', 'PatientName=%s' % name ]) |
|
fce08afe6b2d
test_bitbucket_issue_56
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parents:
119
diff
changeset
|
3780 patientNames = re.findall('\(0010,0010\).*?\[(.*?)\]', a) |
|
fce08afe6b2d
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diff
changeset
|
3781 self.assertEqual(expected, len(patientNames)) |
|
fce08afe6b2d
test_bitbucket_issue_56
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parents:
119
diff
changeset
|
3782 |
|
fce08afe6b2d
test_bitbucket_issue_56
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
119
diff
changeset
|
3783 a = DoPost(_REMOTE, '/tools/find', { 'Level' : 'Patient', |
|
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diff
changeset
|
3784 'CaseSensitive' : False, |
|
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diff
changeset
|
3785 'Query' : { 'PatientName' : name }}) |
|
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test_bitbucket_issue_56
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diff
changeset
|
3786 self.assertEqual(expected, len(a)) |
|
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Sebastien Jodogne <s.jodogne@gmail.com>
parents:
119
diff
changeset
|
3787 |
|
fce08afe6b2d
test_bitbucket_issue_56
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parents:
119
diff
changeset
|
3788 a = DoPost(_REMOTE, '/tools/find', { 'Level' : 'Patient', |
|
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diff
changeset
|
3789 'CaseSensitive' : True, |
|
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diff
changeset
|
3790 'Query' : { 'PatientName' : name }}) |
|
fce08afe6b2d
test_bitbucket_issue_56
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diff
changeset
|
3791 self.assertEqual(expectedSensitive, len(a)) |
|
fce08afe6b2d
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Sebastien Jodogne <s.jodogne@gmail.com>
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119
diff
changeset
|
3792 |
|
fce08afe6b2d
test_bitbucket_issue_56
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
119
diff
changeset
|
3793 UploadInstance(_REMOTE, 'Encodings/Lena-latin1.dcm') |
|
fce08afe6b2d
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diff
changeset
|
3794 |
|
fce08afe6b2d
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Sebastien Jodogne <s.jodogne@gmail.com>
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diff
changeset
|
3795 # WildcardConstraint |
|
fce08afe6b2d
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diff
changeset
|
3796 Check('TeSt*', 1, 0) |
|
fce08afe6b2d
test_bitbucket_issue_56
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
changeset
|
3797 Check('TeSt-a*', 0, 0) |
|
fce08afe6b2d
test_bitbucket_issue_56
Sebastien Jodogne <s.jodogne@gmail.com>
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diff
changeset
|
3798 Check('TeSt-É*', 1, 0) |
|
fce08afe6b2d
test_bitbucket_issue_56
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
changeset
|
3799 Check('TeSt-é*', 1, 0) |
|
fce08afe6b2d
test_bitbucket_issue_56
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
119
diff
changeset
|
3800 Check('Test-é*', 1, 1) |
|
fce08afe6b2d
test_bitbucket_issue_56
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
changeset
|
3801 |
|
fce08afe6b2d
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119
diff
changeset
|
3802 # ListConstraint |
|
fce08afe6b2d
test_bitbucket_issue_56
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
119
diff
changeset
|
3803 Check('Test-éüäöò\\nope', 1, 1) |
|
fce08afe6b2d
test_bitbucket_issue_56
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
119
diff
changeset
|
3804 Check('Test-ÉÜÄÖÒ\\nope', 1, 0) |
|
fce08afe6b2d
test_bitbucket_issue_56
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
119
diff
changeset
|
3805 |
|
fce08afe6b2d
test_bitbucket_issue_56
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
119
diff
changeset
|
3806 # ValueConstraint |
|
fce08afe6b2d
test_bitbucket_issue_56
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
119
diff
changeset
|
3807 Check('Test-éüäöò', 1, 1) |
|
fce08afe6b2d
test_bitbucket_issue_56
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
119
diff
changeset
|
3808 Check('Test-ÉÜÄÖÒ', 1, 0) |
|
fce08afe6b2d
test_bitbucket_issue_56
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
119
diff
changeset
|
3809 |
| 125 | 3810 |
| 3811 def test_gbk_alias(self): | |
| 3812 # https://groups.google.com/d/msg/orthanc-users/WMM8LMbjpUc/02-1f_yFCgAJ | |
| 3813 # This test fails on Orthanc <= 1.3.0 | |
| 3814 i = UploadInstance(_REMOTE, '2017-09-19-GBK-Tumashu.dcm')['ID'] | |
| 3815 tags = DoGet(_REMOTE, '/instances/%s/tags?simplify' % i) | |
| 3816 self.assertEqual(tags['PatientName'], u'徐浩凯') | |
| 3817 self.assertEqual(tags['InstitutionName'], u'灌云县疾病预防控制中心') | |
| 126 | 3818 |
| 3819 | |
| 3820 def test_long_tag(self): | |
| 3821 i = UploadInstance(_REMOTE, 'DummyCTWithLongTag.dcm')['ID'] | |
| 3822 series = 'f2635388-f01d497a-15f7c06b-ad7dba06-c4c599fe' | |
| 3823 | |
| 3824 tags = DoGet(_REMOTE, '/instances/%s/tags' % i) | |
| 3825 self.assertTrue('0018,1020' in tags) | |
| 3826 self.assertEqual('SoftwareVersions', tags['0018,1020']['Name']) | |
| 3827 self.assertEqual('TooLong', tags['0018,1020']['Type']) | |
| 3828 self.assertEqual(None, tags['0018,1020']['Value']) | |
| 3829 | |
| 3830 tags = DoGet(_REMOTE, '/instances/%s/tags?ignore-length=0018-1020' % i) | |
| 3831 self.assertTrue('0018,1020' in tags) | |
| 3832 self.assertEqual('SoftwareVersions', tags['0018,1020']['Name']) | |
| 3833 self.assertEqual('String', tags['0018,1020']['Type']) | |
| 3834 self.assertTrue(tags['0018,1020']['Value'].startswith('Lorem ipsum dolor sit amet')) | |
| 3835 | |
| 3836 tags = DoGet(_REMOTE, '/instances/%s/tags?simplify' % i) | |
| 3837 self.assertTrue('SoftwareVersions' in tags) | |
| 3838 self.assertEqual(None, tags['SoftwareVersions']) | |
| 3839 self.assertTrue('HeartRate' in tags) | |
| 3840 self.assertEqual(474, int(tags['HeartRate'])) | |
| 3841 | |
| 3842 tags = DoGet(_REMOTE, '/instances/%s/simplified-tags' % i) | |
| 3843 self.assertTrue('SoftwareVersions' in tags) | |
| 3844 self.assertEqual(None, tags['SoftwareVersions']) | |
| 3845 | |
| 3846 tags = DoGet(_REMOTE, '/instances/%s/tags?simplify&ignore-length=0018-1020' % i) | |
| 3847 self.assertTrue('SoftwareVersions' in tags) | |
| 3848 self.assertTrue(tags['SoftwareVersions'].startswith('Lorem ipsum dolor sit amet')) | |
| 3849 | |
| 3850 tags = DoGet(_REMOTE, '/instances/%s/tags?simplify&ignore-length=SoftwareVersions' % i) | |
| 3851 self.assertTrue('SoftwareVersions' in tags) | |
| 3852 self.assertTrue(tags['SoftwareVersions'].startswith('Lorem ipsum dolor sit amet')) | |
| 3853 | |
| 3854 tags = DoGet(_REMOTE, '/series/%s/instances-tags' % series) | |
| 3855 self.assertEqual(1, len(tags)) | |
| 3856 self.assertTrue(i in tags.keys()) | |
| 3857 self.assertTrue('0018,1020' in tags[i]) | |
| 3858 self.assertEqual('TooLong', tags[i]['0018,1020']['Type']) | |
| 3859 | |
| 3860 tags = DoGet(_REMOTE, '/series/%s/instances-tags?ignore-length=SoftwareVersions' % series) | |
| 3861 self.assertEqual(1, len(tags)) | |
| 3862 self.assertTrue(i in tags.keys()) | |
| 3863 self.assertTrue('0018,1020' in tags[i]) | |
| 3864 self.assertEqual('String', tags[i]['0018,1020']['Type']) | |
| 3865 self.assertTrue(tags[i]['0018,1020']['Value'].startswith('Lorem ipsum dolor sit amet')) | |
| 3866 | |
|
127
1eea4d3a1ba9
test_extended_media
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
126
diff
changeset
|
3867 |
|
1eea4d3a1ba9
test_extended_media
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
126
diff
changeset
|
3868 def test_extended_media(self): |
|
1eea4d3a1ba9
test_extended_media
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
126
diff
changeset
|
3869 UploadInstance(_REMOTE, 'Knee/T1/IM-0001-0001.dcm') |
|
1eea4d3a1ba9
test_extended_media
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
126
diff
changeset
|
3870 |
|
1eea4d3a1ba9
test_extended_media
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
126
diff
changeset
|
3871 z = GetArchive(_REMOTE, '/patients/%s/media?extended' % DoGet(_REMOTE, '/patients')[0]) |
|
1eea4d3a1ba9
test_extended_media
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
126
diff
changeset
|
3872 self.assertEqual(2, len(z.namelist())) |
|
1eea4d3a1ba9
test_extended_media
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
126
diff
changeset
|
3873 self.assertTrue('IMAGES/IM0' in z.namelist()) |
|
1eea4d3a1ba9
test_extended_media
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
126
diff
changeset
|
3874 self.assertTrue('DICOMDIR' in z.namelist()) |
|
1eea4d3a1ba9
test_extended_media
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
126
diff
changeset
|
3875 |
|
1eea4d3a1ba9
test_extended_media
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
126
diff
changeset
|
3876 try: |
|
1eea4d3a1ba9
test_extended_media
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
126
diff
changeset
|
3877 os.remove('/tmp/DICOMDIR') |
|
1eea4d3a1ba9
test_extended_media
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
126
diff
changeset
|
3878 except: |
|
1eea4d3a1ba9
test_extended_media
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
126
diff
changeset
|
3879 # The file does not exist |
|
1eea4d3a1ba9
test_extended_media
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
126
diff
changeset
|
3880 pass |
|
1eea4d3a1ba9
test_extended_media
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
126
diff
changeset
|
3881 |
|
1eea4d3a1ba9
test_extended_media
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
126
diff
changeset
|
3882 z.extract('DICOMDIR', '/tmp') |
|
1eea4d3a1ba9
test_extended_media
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
126
diff
changeset
|
3883 a = subprocess.check_output([ FindExecutable('dciodvfy'), '/tmp/DICOMDIR' ], |
|
1eea4d3a1ba9
test_extended_media
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
126
diff
changeset
|
3884 stderr = subprocess.STDOUT).split('\n') |
|
1eea4d3a1ba9
test_extended_media
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
126
diff
changeset
|
3885 self.assertEqual(5, len(a)) |
|
1eea4d3a1ba9
test_extended_media
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
126
diff
changeset
|
3886 self.assertTrue(a[0].startswith('Warning')) |
|
1eea4d3a1ba9
test_extended_media
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
126
diff
changeset
|
3887 self.assertEqual('BasicDirectory', a[1]) |
|
1eea4d3a1ba9
test_extended_media
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
126
diff
changeset
|
3888 self.assertTrue('not present in standard DICOM IOD' in a[2]) |
|
1eea4d3a1ba9
test_extended_media
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
126
diff
changeset
|
3889 self.assertTrue('not present in standard DICOM IOD' in a[3]) |
|
1eea4d3a1ba9
test_extended_media
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
126
diff
changeset
|
3890 self.assertEqual('', a[4]) |
|
1eea4d3a1ba9
test_extended_media
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
126
diff
changeset
|
3891 |
|
1eea4d3a1ba9
test_extended_media
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
126
diff
changeset
|
3892 a = subprocess.check_output([ FindExecutable('dcentvfy'), '/tmp/DICOMDIR' ], |
|
1eea4d3a1ba9
test_extended_media
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
126
diff
changeset
|
3893 stderr = subprocess.STDOUT).split('\n') |
|
1eea4d3a1ba9
test_extended_media
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
126
diff
changeset
|
3894 self.assertEqual(1, len(a)) |
|
1eea4d3a1ba9
test_extended_media
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
126
diff
changeset
|
3895 self.assertEqual('', a[0]) |
|
1eea4d3a1ba9
test_extended_media
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
126
diff
changeset
|
3896 |
|
1eea4d3a1ba9
test_extended_media
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
126
diff
changeset
|
3897 a = subprocess.check_output([ FindExecutable('dcm2xml'), '/tmp/DICOMDIR' ]) |
|
1eea4d3a1ba9
test_extended_media
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
126
diff
changeset
|
3898 self.assertTrue(re.search('1.3.46.670589.11.17521.5.0.3124.2008081908590448738', a) != None) |
|
1eea4d3a1ba9
test_extended_media
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
126
diff
changeset
|
3899 |
|
1eea4d3a1ba9
test_extended_media
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
126
diff
changeset
|
3900 # Check the presence of the series description (extended tag) |
|
1eea4d3a1ba9
test_extended_media
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
126
diff
changeset
|
3901 self.assertTrue(re.search('T1W_aTSE', a) != None) |
|
1eea4d3a1ba9
test_extended_media
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
126
diff
changeset
|
3902 |
|
1eea4d3a1ba9
test_extended_media
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
126
diff
changeset
|
3903 os.remove('/tmp/DICOMDIR') |
|
1eea4d3a1ba9
test_extended_media
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
126
diff
changeset
|
3904 |
|
1eea4d3a1ba9
test_extended_media
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
126
diff
changeset
|
3905 |
|
132
149144d854bb
Orthanc.test_anonymize_relationships_1/2
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
130
diff
changeset
|
3906 def test_anonymize_relationships_1(self): |
|
133
f0d4c4707e64
test_anonymize_relationships_3
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
132
diff
changeset
|
3907 UploadInstance(_REMOTE, 'Knee/T1/IM-0001-0001.dcm') |
|
f0d4c4707e64
test_anonymize_relationships_3
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
132
diff
changeset
|
3908 UploadInstance(_REMOTE, 'Knee/T1/IM-0001-0002.dcm') |
|
132
149144d854bb
Orthanc.test_anonymize_relationships_1/2
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
130
diff
changeset
|
3909 study = '0a9b3153-2512774b-2d9580de-1fc3dcf6-3bd83918' |
|
149144d854bb
Orthanc.test_anonymize_relationships_1/2
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
130
diff
changeset
|
3910 |
|
149144d854bb
Orthanc.test_anonymize_relationships_1/2
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
130
diff
changeset
|
3911 anonymized = DoPost(_REMOTE, '/studies/%s/anonymize' % study, |
|
149144d854bb
Orthanc.test_anonymize_relationships_1/2
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
130
diff
changeset
|
3912 '{}', |
|
149144d854bb
Orthanc.test_anonymize_relationships_1/2
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
130
diff
changeset
|
3913 'application/json')['ID'] |
|
149144d854bb
Orthanc.test_anonymize_relationships_1/2
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
130
diff
changeset
|
3914 |
|
149144d854bb
Orthanc.test_anonymize_relationships_1/2
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
130
diff
changeset
|
3915 a = DoGet(_REMOTE, '/studies/%s/instances' % study) |
|
149144d854bb
Orthanc.test_anonymize_relationships_1/2
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
130
diff
changeset
|
3916 self.assertEqual(2, len(a)) |
|
149144d854bb
Orthanc.test_anonymize_relationships_1/2
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
130
diff
changeset
|
3917 a1 = a[0]['ID'] |
|
149144d854bb
Orthanc.test_anonymize_relationships_1/2
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
130
diff
changeset
|
3918 a2 = a[1]['ID'] |
|
149144d854bb
Orthanc.test_anonymize_relationships_1/2
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
130
diff
changeset
|
3919 |
|
149144d854bb
Orthanc.test_anonymize_relationships_1/2
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
130
diff
changeset
|
3920 b = DoGet(_REMOTE, '/studies/%s/instances' % anonymized) |
|
149144d854bb
Orthanc.test_anonymize_relationships_1/2
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
130
diff
changeset
|
3921 self.assertEqual(2, len(b)) |
|
149144d854bb
Orthanc.test_anonymize_relationships_1/2
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
130
diff
changeset
|
3922 b1 = b[0]['ID'] |
|
149144d854bb
Orthanc.test_anonymize_relationships_1/2
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
130
diff
changeset
|
3923 b2 = b[1]['ID'] |
|
149144d854bb
Orthanc.test_anonymize_relationships_1/2
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
130
diff
changeset
|
3924 |
|
149144d854bb
Orthanc.test_anonymize_relationships_1/2
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
130
diff
changeset
|
3925 SEQUENCE = '/instances/%s/content/ReferencedImageSequence' |
|
149144d854bb
Orthanc.test_anonymize_relationships_1/2
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
130
diff
changeset
|
3926 SOP = '/instances/%s/content/ReferencedImageSequence/%d/ReferencedSOPInstanceUID' |
|
149144d854bb
Orthanc.test_anonymize_relationships_1/2
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
130
diff
changeset
|
3927 CLASS = '/instances/%s/content/ReferencedImageSequence/%d/ReferencedSOPClassUID' |
|
149144d854bb
Orthanc.test_anonymize_relationships_1/2
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
130
diff
changeset
|
3928 FRAME = '/instances/%s/content/FrameOfReferenceUID' |
|
149144d854bb
Orthanc.test_anonymize_relationships_1/2
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
130
diff
changeset
|
3929 |
|
149144d854bb
Orthanc.test_anonymize_relationships_1/2
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
130
diff
changeset
|
3930 self.assertEqual(DoGet(_REMOTE, FRAME % a1), |
|
149144d854bb
Orthanc.test_anonymize_relationships_1/2
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
130
diff
changeset
|
3931 DoGet(_REMOTE, FRAME % a2)) |
|
149144d854bb
Orthanc.test_anonymize_relationships_1/2
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
130
diff
changeset
|
3932 self.assertEqual(DoGet(_REMOTE, FRAME % b1), |
|
149144d854bb
Orthanc.test_anonymize_relationships_1/2
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
130
diff
changeset
|
3933 DoGet(_REMOTE, FRAME % b2)) |
|
149144d854bb
Orthanc.test_anonymize_relationships_1/2
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
130
diff
changeset
|
3934 self.assertNotEqual(DoGet(_REMOTE, FRAME % a1), |
|
149144d854bb
Orthanc.test_anonymize_relationships_1/2
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
130
diff
changeset
|
3935 DoGet(_REMOTE, FRAME % b1)) |
|
149144d854bb
Orthanc.test_anonymize_relationships_1/2
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
130
diff
changeset
|
3936 self.assertNotEqual(DoGet(_REMOTE, FRAME % a2), |
|
149144d854bb
Orthanc.test_anonymize_relationships_1/2
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
130
diff
changeset
|
3937 DoGet(_REMOTE, FRAME % b2)) |
|
149144d854bb
Orthanc.test_anonymize_relationships_1/2
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
130
diff
changeset
|
3938 |
|
149144d854bb
Orthanc.test_anonymize_relationships_1/2
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
130
diff
changeset
|
3939 self.assertEqual(3, len(DoGet(_REMOTE, SEQUENCE % a1))) |
|
149144d854bb
Orthanc.test_anonymize_relationships_1/2
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
130
diff
changeset
|
3940 self.assertEqual(3, len(DoGet(_REMOTE, SEQUENCE % a2))) |
|
149144d854bb
Orthanc.test_anonymize_relationships_1/2
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
130
diff
changeset
|
3941 self.assertEqual(3, len(DoGet(_REMOTE, SEQUENCE % b1))) |
|
149144d854bb
Orthanc.test_anonymize_relationships_1/2
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
130
diff
changeset
|
3942 self.assertEqual(3, len(DoGet(_REMOTE, SEQUENCE % b2))) |
|
149144d854bb
Orthanc.test_anonymize_relationships_1/2
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
130
diff
changeset
|
3943 |
|
149144d854bb
Orthanc.test_anonymize_relationships_1/2
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
130
diff
changeset
|
3944 for i in range(3): |
|
149144d854bb
Orthanc.test_anonymize_relationships_1/2
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
130
diff
changeset
|
3945 self.assertEqual(DoGet(_REMOTE, SOP % (a1, i)), |
|
149144d854bb
Orthanc.test_anonymize_relationships_1/2
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
130
diff
changeset
|
3946 DoGet(_REMOTE, SOP % (a2, i))) |
|
149144d854bb
Orthanc.test_anonymize_relationships_1/2
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
130
diff
changeset
|
3947 self.assertEqual(DoGet(_REMOTE, SOP % (b1, i)), |
|
149144d854bb
Orthanc.test_anonymize_relationships_1/2
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
130
diff
changeset
|
3948 DoGet(_REMOTE, SOP % (b2, i))) |
|
149144d854bb
Orthanc.test_anonymize_relationships_1/2
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
130
diff
changeset
|
3949 self.assertNotEqual(DoGet(_REMOTE, SOP % (a1, i)), |
|
149144d854bb
Orthanc.test_anonymize_relationships_1/2
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
130
diff
changeset
|
3950 DoGet(_REMOTE, SOP % (b1, i))) |
|
149144d854bb
Orthanc.test_anonymize_relationships_1/2
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
130
diff
changeset
|
3951 self.assertNotEqual(DoGet(_REMOTE, SOP % (a2, i)), |
|
149144d854bb
Orthanc.test_anonymize_relationships_1/2
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
130
diff
changeset
|
3952 DoGet(_REMOTE, SOP % (b2, i))) |
|
149144d854bb
Orthanc.test_anonymize_relationships_1/2
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
130
diff
changeset
|
3953 self.assertEqual(DoGet(_REMOTE, CLASS % (a1, i)), |
|
149144d854bb
Orthanc.test_anonymize_relationships_1/2
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
130
diff
changeset
|
3954 DoGet(_REMOTE, CLASS % (b1, i))) |
|
149144d854bb
Orthanc.test_anonymize_relationships_1/2
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
130
diff
changeset
|
3955 self.assertEqual(DoGet(_REMOTE, CLASS % (a2, i)), |
|
149144d854bb
Orthanc.test_anonymize_relationships_1/2
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
130
diff
changeset
|
3956 DoGet(_REMOTE, CLASS % (b2, i))) |
|
149144d854bb
Orthanc.test_anonymize_relationships_1/2
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
130
diff
changeset
|
3957 |
|
149144d854bb
Orthanc.test_anonymize_relationships_1/2
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
130
diff
changeset
|
3958 |
|
149144d854bb
Orthanc.test_anonymize_relationships_1/2
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
130
diff
changeset
|
3959 def test_anonymize_relationships_2(self): |
|
133
f0d4c4707e64
test_anonymize_relationships_3
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
132
diff
changeset
|
3960 UploadInstance(_REMOTE, 'Comunix/Ct/IM-0001-0001.dcm') |
|
f0d4c4707e64
test_anonymize_relationships_3
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
132
diff
changeset
|
3961 UploadInstance(_REMOTE, 'Comunix/Ct/IM-0001-0002.dcm') |
|
132
149144d854bb
Orthanc.test_anonymize_relationships_1/2
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
130
diff
changeset
|
3962 study = '6c65289b-db2fcb71-7eaf73f4-8e12470c-a4d6d7cf' |
|
149144d854bb
Orthanc.test_anonymize_relationships_1/2
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
130
diff
changeset
|
3963 |
|
149144d854bb
Orthanc.test_anonymize_relationships_1/2
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
130
diff
changeset
|
3964 anonymized = DoPost(_REMOTE, '/studies/%s/anonymize' % study, |
|
149144d854bb
Orthanc.test_anonymize_relationships_1/2
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
130
diff
changeset
|
3965 '{}', |
|
149144d854bb
Orthanc.test_anonymize_relationships_1/2
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
130
diff
changeset
|
3966 'application/json')['ID'] |
|
149144d854bb
Orthanc.test_anonymize_relationships_1/2
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
130
diff
changeset
|
3967 |
|
149144d854bb
Orthanc.test_anonymize_relationships_1/2
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
130
diff
changeset
|
3968 a = DoGet(_REMOTE, '/studies/%s/instances' % study) |
|
149144d854bb
Orthanc.test_anonymize_relationships_1/2
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
130
diff
changeset
|
3969 self.assertEqual(2, len(a)) |
|
149144d854bb
Orthanc.test_anonymize_relationships_1/2
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
130
diff
changeset
|
3970 a1 = a[0]['ID'] |
|
149144d854bb
Orthanc.test_anonymize_relationships_1/2
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
130
diff
changeset
|
3971 a2 = a[1]['ID'] |
|
149144d854bb
Orthanc.test_anonymize_relationships_1/2
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
130
diff
changeset
|
3972 |
|
149144d854bb
Orthanc.test_anonymize_relationships_1/2
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
130
diff
changeset
|
3973 b = DoGet(_REMOTE, '/studies/%s/instances' % anonymized) |
|
149144d854bb
Orthanc.test_anonymize_relationships_1/2
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
130
diff
changeset
|
3974 self.assertEqual(2, len(b)) |
|
149144d854bb
Orthanc.test_anonymize_relationships_1/2
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
130
diff
changeset
|
3975 b1 = b[0]['ID'] |
|
149144d854bb
Orthanc.test_anonymize_relationships_1/2
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
130
diff
changeset
|
3976 b2 = b[1]['ID'] |
|
149144d854bb
Orthanc.test_anonymize_relationships_1/2
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
130
diff
changeset
|
3977 |
|
149144d854bb
Orthanc.test_anonymize_relationships_1/2
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
130
diff
changeset
|
3978 SEQUENCE = '/instances/%s/content/SourceImageSequence' |
|
149144d854bb
Orthanc.test_anonymize_relationships_1/2
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
130
diff
changeset
|
3979 SOP = '/instances/%s/content/SourceImageSequence/%d/ReferencedSOPInstanceUID' |
|
149144d854bb
Orthanc.test_anonymize_relationships_1/2
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
130
diff
changeset
|
3980 CLASS = '/instances/%s/content/SourceImageSequence/%d/ReferencedSOPClassUID' |
|
149144d854bb
Orthanc.test_anonymize_relationships_1/2
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
130
diff
changeset
|
3981 |
|
149144d854bb
Orthanc.test_anonymize_relationships_1/2
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
130
diff
changeset
|
3982 self.assertEqual(1, len(DoGet(_REMOTE, SEQUENCE % a1))) |
|
149144d854bb
Orthanc.test_anonymize_relationships_1/2
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
130
diff
changeset
|
3983 self.assertEqual(1, len(DoGet(_REMOTE, SEQUENCE % a2))) |
|
149144d854bb
Orthanc.test_anonymize_relationships_1/2
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
130
diff
changeset
|
3984 self.assertEqual(1, len(DoGet(_REMOTE, SEQUENCE % b1))) |
|
149144d854bb
Orthanc.test_anonymize_relationships_1/2
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
130
diff
changeset
|
3985 self.assertEqual(1, len(DoGet(_REMOTE, SEQUENCE % b2))) |
|
149144d854bb
Orthanc.test_anonymize_relationships_1/2
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
130
diff
changeset
|
3986 self.assertEqual(DoGet(_REMOTE, SOP % (a1, 0)), |
|
149144d854bb
Orthanc.test_anonymize_relationships_1/2
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
130
diff
changeset
|
3987 DoGet(_REMOTE, SOP % (a2, 0))) |
|
149144d854bb
Orthanc.test_anonymize_relationships_1/2
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
130
diff
changeset
|
3988 self.assertEqual(DoGet(_REMOTE, SOP % (b1, 0)), |
|
149144d854bb
Orthanc.test_anonymize_relationships_1/2
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
130
diff
changeset
|
3989 DoGet(_REMOTE, SOP % (b2, 0))) |
|
149144d854bb
Orthanc.test_anonymize_relationships_1/2
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
130
diff
changeset
|
3990 self.assertNotEqual(DoGet(_REMOTE, SOP % (a1, 0)), |
|
149144d854bb
Orthanc.test_anonymize_relationships_1/2
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
130
diff
changeset
|
3991 DoGet(_REMOTE, SOP % (b1, 0))) |
|
149144d854bb
Orthanc.test_anonymize_relationships_1/2
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
130
diff
changeset
|
3992 self.assertNotEqual(DoGet(_REMOTE, SOP % (a2, 0)), |
|
149144d854bb
Orthanc.test_anonymize_relationships_1/2
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
130
diff
changeset
|
3993 DoGet(_REMOTE, SOP % (b2, 0))) |
|
149144d854bb
Orthanc.test_anonymize_relationships_1/2
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
130
diff
changeset
|
3994 self.assertEqual(DoGet(_REMOTE, CLASS % (a1, 0)), |
|
149144d854bb
Orthanc.test_anonymize_relationships_1/2
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
130
diff
changeset
|
3995 DoGet(_REMOTE, CLASS % (b1, 0))) |
|
149144d854bb
Orthanc.test_anonymize_relationships_1/2
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
130
diff
changeset
|
3996 self.assertEqual(DoGet(_REMOTE, CLASS % (a2, 0)), |
|
149144d854bb
Orthanc.test_anonymize_relationships_1/2
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
130
diff
changeset
|
3997 DoGet(_REMOTE, CLASS % (b2, 0))) |
|
133
f0d4c4707e64
test_anonymize_relationships_3
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
132
diff
changeset
|
3998 |
|
f0d4c4707e64
test_anonymize_relationships_3
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
132
diff
changeset
|
3999 |
|
f0d4c4707e64
test_anonymize_relationships_3
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
132
diff
changeset
|
4000 def test_anonymize_relationships_3(self): |
|
f0d4c4707e64
test_anonymize_relationships_3
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
132
diff
changeset
|
4001 sr1 = UploadInstance(_REMOTE, 'HierarchicalAnonymization/StructuredReports/IM0')['ID'] |
|
f0d4c4707e64
test_anonymize_relationships_3
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
132
diff
changeset
|
4002 mr1 = UploadInstance(_REMOTE, 'HierarchicalAnonymization/StructuredReports/IM631')['ID'] |
|
f0d4c4707e64
test_anonymize_relationships_3
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
132
diff
changeset
|
4003 study = 'ef351eb2-c1147229-062736b8-35a151e3-e32d526b' |
|
f0d4c4707e64
test_anonymize_relationships_3
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
132
diff
changeset
|
4004 |
|
f0d4c4707e64
test_anonymize_relationships_3
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
132
diff
changeset
|
4005 anonymized = DoPost(_REMOTE, '/studies/%s/anonymize' % study, |
|
f0d4c4707e64
test_anonymize_relationships_3
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
132
diff
changeset
|
4006 { "Keep" : [ "ContentSequence" ] }) ['ID'] |
|
f0d4c4707e64
test_anonymize_relationships_3
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
132
diff
changeset
|
4007 |
|
f0d4c4707e64
test_anonymize_relationships_3
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
132
diff
changeset
|
4008 a = DoGet(_REMOTE, '/studies/%s/instances' % anonymized) |
|
f0d4c4707e64
test_anonymize_relationships_3
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
132
diff
changeset
|
4009 self.assertEqual(2, len(a)) |
|
f0d4c4707e64
test_anonymize_relationships_3
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
132
diff
changeset
|
4010 |
|
f0d4c4707e64
test_anonymize_relationships_3
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
132
diff
changeset
|
4011 if DoGet(_REMOTE, '/instances/%s/content/Modality' % a[0]['ID']) == 'SR': |
|
f0d4c4707e64
test_anonymize_relationships_3
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
132
diff
changeset
|
4012 sr2 = a[0]['ID'] |
|
f0d4c4707e64
test_anonymize_relationships_3
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
132
diff
changeset
|
4013 mr2 = a[1]['ID'] |
|
f0d4c4707e64
test_anonymize_relationships_3
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
132
diff
changeset
|
4014 else: |
|
f0d4c4707e64
test_anonymize_relationships_3
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
132
diff
changeset
|
4015 sr2 = a[1]['ID'] |
|
f0d4c4707e64
test_anonymize_relationships_3
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
132
diff
changeset
|
4016 mr2 = a[0]['ID'] |
|
f0d4c4707e64
test_anonymize_relationships_3
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
132
diff
changeset
|
4017 |
|
f0d4c4707e64
test_anonymize_relationships_3
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
132
diff
changeset
|
4018 self.assertEqual(DoGet(_REMOTE, '/instances/%s/content/Modality' % sr1), |
|
f0d4c4707e64
test_anonymize_relationships_3
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
132
diff
changeset
|
4019 DoGet(_REMOTE, '/instances/%s/content/Modality' % sr2)) |
|
f0d4c4707e64
test_anonymize_relationships_3
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
132
diff
changeset
|
4020 self.assertEqual(DoGet(_REMOTE, '/instances/%s/content/Modality' % mr1), |
|
f0d4c4707e64
test_anonymize_relationships_3
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
132
diff
changeset
|
4021 DoGet(_REMOTE, '/instances/%s/content/Modality' % mr2)) |
|
f0d4c4707e64
test_anonymize_relationships_3
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
132
diff
changeset
|
4022 |
|
f0d4c4707e64
test_anonymize_relationships_3
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
132
diff
changeset
|
4023 mrUid1 = DoGet(_REMOTE, '/instances/%s' % mr1)['MainDicomTags']['SOPInstanceUID'] |
|
f0d4c4707e64
test_anonymize_relationships_3
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
132
diff
changeset
|
4024 mrUid2 = DoGet(_REMOTE, '/instances/%s' % mr2)['MainDicomTags']['SOPInstanceUID'] |
|
f0d4c4707e64
test_anonymize_relationships_3
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
132
diff
changeset
|
4025 mrSeries1 = DoGet(_REMOTE, '/instances/%s/content/SeriesInstanceUID' % mr1).strip('\x00') |
|
f0d4c4707e64
test_anonymize_relationships_3
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
132
diff
changeset
|
4026 mrSeries2 = DoGet(_REMOTE, '/instances/%s/content/SeriesInstanceUID' % mr2).strip('\x00') |
|
f0d4c4707e64
test_anonymize_relationships_3
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
132
diff
changeset
|
4027 mrStudy1 = DoGet(_REMOTE, '/instances/%s/content/StudyInstanceUID' % mr1).strip('\x00') |
|
f0d4c4707e64
test_anonymize_relationships_3
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
132
diff
changeset
|
4028 mrStudy2 = DoGet(_REMOTE, '/instances/%s/content/StudyInstanceUID' % mr2).strip('\x00') |
|
f0d4c4707e64
test_anonymize_relationships_3
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
132
diff
changeset
|
4029 |
|
f0d4c4707e64
test_anonymize_relationships_3
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
132
diff
changeset
|
4030 PATH1 = '/instances/%s/content/CurrentRequestedProcedureEvidenceSequence' |
|
f0d4c4707e64
test_anonymize_relationships_3
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
132
diff
changeset
|
4031 PATH2 = PATH1 + '/0/ReferencedSeriesSequence' |
|
f0d4c4707e64
test_anonymize_relationships_3
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
132
diff
changeset
|
4032 PATH3 = PATH2 + '/0/ReferencedSOPSequence' |
|
f0d4c4707e64
test_anonymize_relationships_3
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
132
diff
changeset
|
4033 PATH4 = PATH3 + '/0/ReferencedSOPInstanceUID' |
|
f0d4c4707e64
test_anonymize_relationships_3
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
132
diff
changeset
|
4034 PATH5 = PATH3 + '/0/ReferencedSOPClassUID' |
|
f0d4c4707e64
test_anonymize_relationships_3
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
132
diff
changeset
|
4035 |
|
f0d4c4707e64
test_anonymize_relationships_3
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
132
diff
changeset
|
4036 self.assertEqual(1, len(DoGet(_REMOTE, PATH1 % sr1))) |
|
f0d4c4707e64
test_anonymize_relationships_3
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
132
diff
changeset
|
4037 self.assertEqual(1, len(DoGet(_REMOTE, PATH2 % sr1))) |
|
f0d4c4707e64
test_anonymize_relationships_3
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
132
diff
changeset
|
4038 self.assertEqual(1, len(DoGet(_REMOTE, PATH3 % sr1))) |
|
f0d4c4707e64
test_anonymize_relationships_3
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|
4039 self.assertEqual(DoGet(_REMOTE, PATH4 % sr1), mrUid1) |
|
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|
4040 self.assertEqual(mrSeries1, DoGet(_REMOTE, (PATH2 + '/0/SeriesInstanceUID') % sr1).strip('\x00')) |
|
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changeset
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4041 self.assertEqual(mrStudy1, DoGet(_REMOTE, (PATH1 + '/0/StudyInstanceUID') % sr1).strip('\x00')) |
|
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4042 |
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changeset
|
4043 self.assertEqual(1, len(DoGet(_REMOTE, PATH1 % sr2))) |
|
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changeset
|
4044 self.assertEqual(1, len(DoGet(_REMOTE, PATH2 % sr2))) |
|
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changeset
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4045 self.assertEqual(1, len(DoGet(_REMOTE, PATH3 % sr2))) |
|
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changeset
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4046 self.assertEqual(DoGet(_REMOTE, PATH5 % sr1), DoGet(_REMOTE, PATH5 % sr2)) |
|
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4047 |
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test_anonymize_relationships_3
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changeset
|
4048 self.assertEqual(mrUid2, DoGet(_REMOTE, PATH4 % sr2).strip('\x00')) |
|
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changeset
|
4049 self.assertEqual(mrSeries2, DoGet(_REMOTE, (PATH2 + '/0/SeriesInstanceUID') % sr2).strip('\x00')) |
|
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changeset
|
4050 self.assertEqual(mrStudy2, DoGet(_REMOTE, (PATH1 + '/0/StudyInstanceUID') % sr2).strip('\x00')) |
|
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test_anonymize_relationships_3
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changeset
|
4051 |
|
f0d4c4707e64
test_anonymize_relationships_3
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parents:
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diff
changeset
|
4052 content1 = DoGet(_REMOTE, '/instances/%s/tags?simplify' % sr1) ['ContentSequence'] |
|
f0d4c4707e64
test_anonymize_relationships_3
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diff
changeset
|
4053 content2 = DoGet(_REMOTE, '/instances/%s/tags?simplify' % sr2) ['ContentSequence'] |
|
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test_anonymize_relationships_3
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diff
changeset
|
4054 self.assertEqual(str(content1), str(content2)) |
|
141
5de178abe4d8
test_bitbucket_issue_94
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138
diff
changeset
|
4055 |
|
5de178abe4d8
test_bitbucket_issue_94
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diff
changeset
|
4056 |
|
5de178abe4d8
test_bitbucket_issue_94
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diff
changeset
|
4057 def test_bitbucket_issue_94(self): |
|
5de178abe4d8
test_bitbucket_issue_94
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diff
changeset
|
4058 # "a simple instance modification should not modify FrameOfReferenceUID + ..." |
| 319 | 4059 # https://bugs.orthanc-server.com/show_bug.cgi?id=94 |
|
141
5de178abe4d8
test_bitbucket_issue_94
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diff
changeset
|
4060 i = UploadInstance(_REMOTE, 'Issue94.dcm')['ID'] |
|
5de178abe4d8
test_bitbucket_issue_94
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diff
changeset
|
4061 |
|
5de178abe4d8
test_bitbucket_issue_94
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diff
changeset
|
4062 source = DoGet(_REMOTE, '/instances/%s/attachments/dicom/data' % i) |
|
5de178abe4d8
test_bitbucket_issue_94
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diff
changeset
|
4063 |
|
5de178abe4d8
test_bitbucket_issue_94
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diff
changeset
|
4064 modified = DoPost(_REMOTE, '/instances/%s/modify' % i, |
|
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test_bitbucket_issue_94
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diff
changeset
|
4065 { "Replace" : {"PatientID" : "toto"}, "Force": True}) |
|
5de178abe4d8
test_bitbucket_issue_94
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diff
changeset
|
4066 |
|
5de178abe4d8
test_bitbucket_issue_94
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diff
changeset
|
4067 anonymized = DoPost(_REMOTE, '/instances/%s/anonymize' % i) |
|
5de178abe4d8
test_bitbucket_issue_94
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diff
changeset
|
4068 |
|
5de178abe4d8
test_bitbucket_issue_94
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diff
changeset
|
4069 a = ExtractDicomTags(source, [ 'FrameOfReferenceUID' ]) |
|
5de178abe4d8
test_bitbucket_issue_94
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diff
changeset
|
4070 self.assertEqual(1, len(a)) |
|
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parents:
138
diff
changeset
|
4071 |
|
5de178abe4d8
test_bitbucket_issue_94
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parents:
138
diff
changeset
|
4072 b = ExtractDicomTags(modified, [ 'FrameOfReferenceUID' ]) |
|
5de178abe4d8
test_bitbucket_issue_94
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parents:
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diff
changeset
|
4073 self.assertEqual(1, len(b)) |
|
5de178abe4d8
test_bitbucket_issue_94
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parents:
138
diff
changeset
|
4074 |
|
5de178abe4d8
test_bitbucket_issue_94
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parents:
138
diff
changeset
|
4075 c = ExtractDicomTags(anonymized, [ 'FrameOfReferenceUID' ]) |
|
5de178abe4d8
test_bitbucket_issue_94
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parents:
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diff
changeset
|
4076 self.assertEqual(1, len(c)) |
|
5de178abe4d8
test_bitbucket_issue_94
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parents:
138
diff
changeset
|
4077 |
|
5de178abe4d8
test_bitbucket_issue_94
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parents:
138
diff
changeset
|
4078 self.assertEqual(a, b) # Modified DICOM |
|
5de178abe4d8
test_bitbucket_issue_94
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
138
diff
changeset
|
4079 self.assertNotEqual(a, c) # Anonymized DICOM |
|
143
28d50ffac07d
test_metadata_origin
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
142
diff
changeset
|
4080 |
|
28d50ffac07d
test_metadata_origin
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
142
diff
changeset
|
4081 |
|
28d50ffac07d
test_metadata_origin
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parents:
142
diff
changeset
|
4082 def test_metadata_origin(self): |
|
28d50ffac07d
test_metadata_origin
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parents:
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diff
changeset
|
4083 # Upload using the REST API |
|
144
7809fdf8056f
testing metadata?expand
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parents:
143
diff
changeset
|
4084 i = UploadInstance(_REMOTE, 'Knee/T1/IM-0001-0001.dcm')['ID'] |
|
143
28d50ffac07d
test_metadata_origin
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parents:
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diff
changeset
|
4085 self.assertEqual('RestApi', DoGet(_REMOTE, '/instances/%s/metadata/Origin' % i)) |
|
28d50ffac07d
test_metadata_origin
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parents:
142
diff
changeset
|
4086 self.assertEqual('', DoGet(_REMOTE, '/instances/%s/metadata/RemoteAET' % i)) |
|
28d50ffac07d
test_metadata_origin
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parents:
142
diff
changeset
|
4087 self.assertNotEqual('', DoGet(_REMOTE, '/instances/%s/metadata/RemoteIP' % i)) |
|
28d50ffac07d
test_metadata_origin
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parents:
142
diff
changeset
|
4088 self.assertRaises(Exception, lambda: DoGet(_REMOTE, '/instances/%s/metadata/CalledAET' % i)) |
| 315 | 4089 |
| 4090 # "HttpUsername" is empty iff "AuthenticationEnabled" is "false" | |
| 4091 self.assertTrue(DoGet(_REMOTE, '/instances/%s/metadata/HttpUsername' % i) in [ '', 'alice' ]) | |
| 4092 | |
|
144
7809fdf8056f
testing metadata?expand
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
143
diff
changeset
|
4093 m = DoGet(_REMOTE, '/instances/%s/metadata?expand' % i) |
|
7809fdf8056f
testing metadata?expand
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
143
diff
changeset
|
4094 self.assertEqual('RestApi', m['Origin']) |
|
7809fdf8056f
testing metadata?expand
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
143
diff
changeset
|
4095 self.assertEqual('', m['RemoteAET']) |
|
7809fdf8056f
testing metadata?expand
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
143
diff
changeset
|
4096 self.assertNotEqual('', m['RemoteIP']) |
|
7809fdf8056f
testing metadata?expand
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
143
diff
changeset
|
4097 self.assertFalse('CalledAET' in m) |
| 315 | 4098 self.assertTrue('HttpUsername' in m) |
| 4099 self.assertTrue(m['HttpUsername'] in [ '', 'alice' ]) | |
|
144
7809fdf8056f
testing metadata?expand
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
143
diff
changeset
|
4100 |
|
7809fdf8056f
testing metadata?expand
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
143
diff
changeset
|
4101 self.assertEqual('1.2.840.10008.1.2.4.91', m['TransferSyntax']) |
|
7809fdf8056f
testing metadata?expand
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
143
diff
changeset
|
4102 self.assertEqual('1.2.840.10008.5.1.4.1.1.4', m['SopClassUid']) |
|
7809fdf8056f
testing metadata?expand
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
143
diff
changeset
|
4103 self.assertEqual('1', m['IndexInSeries']) |
|
7809fdf8056f
testing metadata?expand
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
143
diff
changeset
|
4104 self.assertTrue('ReceptionDate' in m) |
|
7809fdf8056f
testing metadata?expand
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
143
diff
changeset
|
4105 |
|
143
28d50ffac07d
test_metadata_origin
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
142
diff
changeset
|
4106 DoDelete(_REMOTE, '/instances/%s' % i) |
|
28d50ffac07d
test_metadata_origin
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
142
diff
changeset
|
4107 |
|
28d50ffac07d
test_metadata_origin
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
142
diff
changeset
|
4108 # Upload using the DICOM protocol |
|
28d50ffac07d
test_metadata_origin
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
142
diff
changeset
|
4109 subprocess.check_call([ FindExecutable('storescu'), |
|
28d50ffac07d
test_metadata_origin
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
142
diff
changeset
|
4110 _REMOTE['Server'], str(_REMOTE['DicomPort']), |
|
144
7809fdf8056f
testing metadata?expand
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
143
diff
changeset
|
4111 GetDatabasePath('Knee/T1/IM-0001-0001.dcm'), |
|
7809fdf8056f
testing metadata?expand
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
143
diff
changeset
|
4112 '-xw' ]) # Propose JPEG2000 |
|
143
28d50ffac07d
test_metadata_origin
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
142
diff
changeset
|
4113 self.assertEqual('DicomProtocol', DoGet(_REMOTE, '/instances/%s/metadata/Origin' % i)) |
|
28d50ffac07d
test_metadata_origin
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
142
diff
changeset
|
4114 self.assertEqual('STORESCU', DoGet(_REMOTE, '/instances/%s/metadata/RemoteAET' % i)) |
|
28d50ffac07d
test_metadata_origin
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
142
diff
changeset
|
4115 self.assertNotEqual('', DoGet(_REMOTE, '/instances/%s/metadata/RemoteIP' % i)) |
|
28d50ffac07d
test_metadata_origin
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
142
diff
changeset
|
4116 self.assertEqual('ANY-SCP', DoGet(_REMOTE, '/instances/%s/metadata/CalledAET' % i)) |
|
28d50ffac07d
test_metadata_origin
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
142
diff
changeset
|
4117 self.assertRaises(Exception, lambda: DoGet(_REMOTE, '/instances/%s/metadata/HttpUsername' % i)) |
|
144
7809fdf8056f
testing metadata?expand
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
143
diff
changeset
|
4118 |
|
7809fdf8056f
testing metadata?expand
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
143
diff
changeset
|
4119 m = DoGet(_REMOTE, '/instances/%s/metadata?expand' % i) |
|
7809fdf8056f
testing metadata?expand
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
143
diff
changeset
|
4120 self.assertEqual('DicomProtocol', m['Origin']) |
|
7809fdf8056f
testing metadata?expand
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
143
diff
changeset
|
4121 self.assertEqual('STORESCU', m['RemoteAET']) |
|
7809fdf8056f
testing metadata?expand
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
143
diff
changeset
|
4122 self.assertNotEqual('', m['RemoteIP']) |
|
7809fdf8056f
testing metadata?expand
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
143
diff
changeset
|
4123 self.assertEqual('ANY-SCP', m['CalledAET']) |
|
7809fdf8056f
testing metadata?expand
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
143
diff
changeset
|
4124 self.assertFalse('HttpUsername' in m) |
|
7809fdf8056f
testing metadata?expand
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
143
diff
changeset
|
4125 |
|
7809fdf8056f
testing metadata?expand
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
143
diff
changeset
|
4126 self.assertEqual('1.2.840.10008.1.2.4.91', m['TransferSyntax']) |
|
7809fdf8056f
testing metadata?expand
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
143
diff
changeset
|
4127 self.assertEqual('1.2.840.10008.5.1.4.1.1.4', m['SopClassUid']) |
|
7809fdf8056f
testing metadata?expand
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143
diff
changeset
|
4128 self.assertEqual('1', m['IndexInSeries']) |
|
7809fdf8056f
testing metadata?expand
Sebastien Jodogne <s.jodogne@gmail.com>
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143
diff
changeset
|
4129 self.assertTrue('ReceptionDate' in m) |
| 147 | 4130 |
| 4131 | |
| 4132 def test_lua_deadlock(self): | |
| 4133 # Rana Asim Wajid (2018-07-14): "It does seem that the issue | |
| 4134 # is with the lua script I'm using for conversion of images to | |
| 4135 # JPEG2000. When the script is used with 1.4.0 the first | |
| 4136 # instance appears to be stored and then everything just | |
| 4137 # halts, ie Orthanc wont respond to anything after that." | |
| 4138 # https://groups.google.com/d/msg/orthanc-users/Rc-Beb42xc8/JUgdzrmCAgAJ | |
| 174 | 4139 InstallLuaScriptFromPath(_REMOTE, 'Lua/Jpeg2000Conversion.lua') |
| 147 | 4140 |
| 4141 subprocess.check_call([ FindExecutable('storescu'), | |
| 4142 _REMOTE['Server'], str(_REMOTE['DicomPort']), | |
| 4143 GetDatabasePath('Brainix/Flair/IM-0001-0001.dcm'), | |
| 4144 GetDatabasePath('Brainix/Flair/IM-0001-0002.dcm'), | |
| 4145 ]) | |
| 4146 | |
| 4147 instances = DoGet(_REMOTE, '/instances') | |
| 4148 self.assertEqual(2, len(instances)) | |
| 4149 | |
| 4150 t1 = DoGet(_REMOTE, '/instances/%s/metadata/TransferSyntax' % instances[0]) | |
| 4151 t2 = DoGet(_REMOTE, '/instances/%s/metadata/TransferSyntax' % instances[1]) | |
| 175 | 4152 self.assertEqual('1.2.840.10008.1.2.4.90', t1) # this will fail if libgdcm-tools is not installed |
| 147 | 4153 self.assertEqual(t1, t2); |
|
154
4a533d003080
test_find_group_length
Sebastien Jodogne <s.jodogne@gmail.com>
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147
diff
changeset
|
4154 |
|
4a533d003080
test_find_group_length
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
147
diff
changeset
|
4155 |
|
4a533d003080
test_find_group_length
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
147
diff
changeset
|
4156 def test_find_group_length(self): |
|
4a533d003080
test_find_group_length
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
147
diff
changeset
|
4157 # Orthanc <= 1.4.1 fails to answer C-FIND queries that contain |
|
4a533d003080
test_find_group_length
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
147
diff
changeset
|
4158 # one of the Generic Group Length tags (*, 0x0000) |
|
4a533d003080
test_find_group_length
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
147
diff
changeset
|
4159 a = UploadInstance(_REMOTE, 'Brainix/Flair/IM-0001-0001.dcm')['ID'] |
|
4a533d003080
test_find_group_length
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
147
diff
changeset
|
4160 result = CallFindScu([ '-k', '0008,0052=STUDY', '-k', '0008,0000=80' ]) |
|
4a533d003080
test_find_group_length
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
147
diff
changeset
|
4161 self.assertFalse('UnableToProcess' in result) |
|
4a533d003080
test_find_group_length
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
147
diff
changeset
|
4162 self.assertFalse('E:' in result) |
|
179
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|
4163 |
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|
4164 |
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|
4165 def test_split(self): |
|
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|
4166 UploadInstance(_REMOTE, 'Knee/T1/IM-0001-0001.dcm') |
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|
4167 UploadInstance(_REMOTE, 'Knee/T2/IM-0001-0001.dcm') |
|
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|
4168 knee1Sop = '1.3.46.670589.11.17521.5.0.3124.2008081908590448738' |
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|
4169 knee2Sop = '1.3.46.670589.11.17521.5.0.3124.2008081909113806560' |
|
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|
4170 study = '0a9b3153-2512774b-2d9580de-1fc3dcf6-3bd83918' |
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|
4171 t1 = '6de73705-c4e65c1b-9d9ea1b5-cabcd8e7-f15e4285' |
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|
4172 t2 = 'bbf7a453-0d34251a-03663b55-46bb31b9-ffd74c59' |
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|
4173 |
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|
4174 self.assertEqual(1, len(DoGet(_REMOTE, '/studies'))) |
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|
4175 self.assertEqual(2, len(DoGet(_REMOTE, '/series'))) |
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|
4176 |
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|
4177 info = DoGet(_REMOTE, '/studies/%s' % study) |
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|
4178 self.assertTrue('ReferringPhysicianName' in info['MainDicomTags']) |
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|
4179 |
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|
4180 job = MonitorJob2(_REMOTE, lambda: DoPost |
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|
4181 (_REMOTE, '/studies/%s/split' % study, { |
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|
4182 'Series' : [ t2 ], |
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|
4183 'Replace' : { 'PatientName' : 'Hello' }, |
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|
4184 'Remove' : [ 'ReferringPhysicianName' ], |
| 181 | 4185 'KeepSource' : False, |
| 4186 'Asynchronous' : True | |
|
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|
4187 })) |
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|
4188 |
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|
4189 self.assertNotEqual(None, job) |
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|
4190 |
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|
4191 studies = set(DoGet(_REMOTE, '/studies')) |
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|
4192 self.assertEqual(2, len(studies)) |
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|
4193 |
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|
4194 series = set(DoGet(_REMOTE, '/series')) |
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|
4195 self.assertEqual(2, len(series)) |
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|
4196 self.assertTrue(t1 in series) |
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|
4197 |
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|
4198 study2 = DoGet(_REMOTE, '/jobs/%s' % job)['Content']['TargetStudy'] |
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|
4199 self.assertTrue(study in studies) |
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|
4200 self.assertTrue(study2 in studies) |
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|
4201 |
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|
4202 info = DoGet(_REMOTE, '/studies/%s' % study2) |
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|
4203 self.assertTrue('Hello', info['PatientMainDicomTags']['PatientName']) |
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|
4204 self.assertFalse('ReferringPhysicianName' in info['MainDicomTags']) |
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|
4205 |
|
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|
4206 sopInstanceUids = set() |
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|
4207 for i in DoGet(_REMOTE, '/instances?expand'): |
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|
4208 sopInstanceUids.add(i['MainDicomTags']['SOPInstanceUID']) |
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|
4209 |
|
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|
4210 self.assertTrue(knee1Sop in sopInstanceUids) |
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|
4211 |
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|
4212 # Fails if Orthanc <= 1.5.7 |
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|
4213 self.assertFalse(knee2Sop in sopInstanceUids) # Because "KeepSource" is False |
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|
4214 |
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|
4215 # One original instance is kept, another one is added because of the split |
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|
4216 self.assertEqual(2, len(sopInstanceUids)) |
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|
4217 |
|
179
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|
4218 |
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changeset
|
4219 def test_merge(self): |
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|
4220 UploadInstance(_REMOTE, 'Knee/T1/IM-0001-0001.dcm') |
|
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|
4221 UploadInstance(_REMOTE, 'Brainix/Flair/IM-0001-0001.dcm') |
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changeset
|
4222 kneeSop = '1.3.46.670589.11.17521.5.0.3124.2008081908590448738' |
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changeset
|
4223 brainixSop = '1.3.46.670589.11.0.0.11.4.2.0.8743.5.5396.2006120114314079549' |
|
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|
4224 knee = '0a9b3153-2512774b-2d9580de-1fc3dcf6-3bd83918' |
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|
4225 t1 = '6de73705-c4e65c1b-9d9ea1b5-cabcd8e7-f15e4285' |
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changeset
|
4226 brainix = '27f7126f-4f66fb14-03f4081b-f9341db2-53925988' |
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changeset
|
4227 flair = '1e2c125c-411b8e86-3f4fe68e-a7584dd3-c6da78f0' |
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changeset
|
4228 |
|
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changeset
|
4229 self.assertEqual(2, len(DoGet(_REMOTE, '/studies'))) |
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|
4230 self.assertEqual(2, len(DoGet(_REMOTE, '/series'))) |
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changeset
|
4231 |
|
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changeset
|
4232 job = MonitorJob2(_REMOTE, lambda: DoPost |
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diff
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|
4233 (_REMOTE, '/studies/%s/merge' % knee, { |
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changeset
|
4234 'Resources' : [ brainix ], |
| 181 | 4235 'KeepSource' : True, |
| 4236 'Synchronous' : False | |
|
179
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|
4237 })) |
|
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diff
changeset
|
4238 |
|
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diff
changeset
|
4239 self.assertNotEqual(None, job) |
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diff
changeset
|
4240 |
|
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diff
changeset
|
4241 studies = set(DoGet(_REMOTE, '/studies')) |
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diff
changeset
|
4242 self.assertEqual(2, len(studies)) |
|
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diff
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|
4243 self.assertTrue(knee in studies) |
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|
4244 self.assertTrue(brainix in studies) |
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diff
changeset
|
4245 |
|
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diff
changeset
|
4246 series = set(DoGet(_REMOTE, '/studies/%s' % knee)['Series']) |
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|
4247 self.assertTrue(t1 in series) |
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diff
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|
4248 series.remove(t1) |
|
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diff
changeset
|
4249 self.assertEqual(1, len(series)) |
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diff
changeset
|
4250 |
|
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diff
changeset
|
4251 instances = DoGet(_REMOTE, '/series/%s' % list(series)[0])['Instances'] |
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|
4252 self.assertEqual(1, len(instances)) |
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|
4253 merged = DoGet(_REMOTE, '/instances/%s/tags?simplify' % instances[0]) |
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changeset
|
4254 |
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diff
changeset
|
4255 instances = DoGet(_REMOTE, '/series/%s' % t1)['Instances'] |
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changeset
|
4256 self.assertEqual(1, len(instances)) |
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|
4257 a = DoGet(_REMOTE, '/instances/%s/tags?simplify' % instances[0]) |
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changeset
|
4258 |
|
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diff
changeset
|
4259 instances = DoGet(_REMOTE, '/series/%s' % flair)['Instances'] |
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changeset
|
4260 self.assertEqual(1, len(instances)) |
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|
4261 b = DoGet(_REMOTE, '/instances/%s/tags?simplify' % instances[0]) |
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changeset
|
4262 |
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|
4263 tags = DoGet(_REMOTE, '/studies/%s' % knee) |
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changeset
|
4264 |
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changeset
|
4265 for key in tags['PatientMainDicomTags']: |
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|
4266 self.assertEqual(a[key], merged[key]) |
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|
4267 if (key in b and key != 'PatientSex'): |
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|
4268 self.assertNotEqual(a[key], b[key]) |
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|
4269 |
|
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changeset
|
4270 for key in tags['MainDicomTags']: |
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changeset
|
4271 # Not in the patient/study module |
|
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diff
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|
4272 if (not key in [ 'InstitutionName', |
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4273 'RequestingPhysician', |
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4274 'RequestedProcedureDescription', ]): |
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diff
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4275 self.assertEqual(a[key], merged[key]) |
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diff
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4276 if (key in b): |
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diff
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4277 self.assertNotEqual(a[key], b[key]) |
|
254
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4278 |
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4279 sopInstanceUids = set() |
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4280 for i in DoGet(_REMOTE, '/instances?expand'): |
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4281 sopInstanceUids.add(i['MainDicomTags']['SOPInstanceUID']) |
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4282 |
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4283 self.assertTrue(kneeSop in sopInstanceUids) |
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4284 self.assertTrue(brainixSop in sopInstanceUids) |
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4285 |
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4286 # Fails if Orthanc <= 1.5.7 |
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4287 # The 2 original instances are kept, another one is added because of the merge |
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4288 self.assertEqual(3, len(sopInstanceUids)) |
|
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4289 |
| 187 | 4290 |
| 4291 def test_async_archive(self): | |
| 4292 # Testing the asynchronous generation of archives/medias (new | |
| 4293 # in Orthanc 1.4.3) | |
| 4294 UploadInstance(_REMOTE, 'Knee/T1/IM-0001-0001.dcm') | |
| 4295 UploadInstance(_REMOTE, 'Knee/T2/IM-0001-0001.dcm') | |
| 4296 | |
| 4297 kneeT1 = '6de73705-c4e65c1b-9d9ea1b5-cabcd8e7-f15e4285' | |
| 4298 kneeT2 = 'bbf7a453-0d34251a-03663b55-46bb31b9-ffd74c59' | |
| 4299 | |
| 4300 job = MonitorJob2(_REMOTE, lambda: DoPost | |
| 4301 (_REMOTE, '/studies/%s/archive' % kneeT1, { | |
| 4302 'Synchronous' : False | |
| 4303 })) | |
| 4304 | |
| 4305 z = GetArchive(_REMOTE, '/jobs/%s/archive' % job) | |
| 4306 self.assertEqual(1, len(z.namelist())) | |
| 4307 self.assertFalse('DICOMDIR' in z.namelist()) | |
| 4308 | |
|
354
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diff
changeset
|
4309 info = DoGet(_REMOTE, '/jobs/%s' % job) |
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|
4310 self.assertEqual(0, info['Content']['ArchiveSizeMB']) # New in Orthanc 1.8.1 |
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|
4311 self.assertEqual(1, info['Content']['InstancesCount']) |
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|
4312 self.assertEqual(0, info['Content']['UncompressedSizeMB']) |
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4313 |
| 187 | 4314 job2 = MonitorJob2(_REMOTE, lambda: DoPost |
| 4315 (_REMOTE, '/studies/%s/media' % kneeT1, { | |
| 4316 'Synchronous' : False | |
| 4317 })) | |
| 4318 | |
| 4319 # The archive from the first job has been replaced by the | |
| 4320 # archive from second job (as MediaArchiveSize == 1) | |
| 4321 self.assertRaises(Exception, lambda: GetArchive(_REMOTE, '/jobs/%s/archive' % job)) | |
| 4322 | |
| 4323 z = GetArchive(_REMOTE, '/jobs/%s/archive' % job2) | |
| 4324 self.assertEqual(2, len(z.namelist())) | |
| 4325 self.assertTrue('DICOMDIR' in z.namelist()) | |
| 4326 | |
|
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changeset
|
4327 info = DoGet(_REMOTE, '/jobs/%s' % job2) |
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|
4328 self.assertEqual(0, info['Content']['ArchiveSizeMB']) # New in Orthanc 1.8.1 |
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|
4329 self.assertEqual(1, info['Content']['InstancesCount']) |
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|
4330 self.assertEqual(0, info['Content']['UncompressedSizeMB']) |
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|
4331 |
| 187 | 4332 job = MonitorJob2(_REMOTE, lambda: DoPost |
| 4333 (_REMOTE, '/tools/create-archive', { | |
| 4334 'Synchronous' : False, | |
| 4335 'Resources' : [ kneeT1, kneeT2 ], | |
| 4336 })) | |
| 4337 | |
| 4338 z = GetArchive(_REMOTE, '/jobs/%s/archive' % job) | |
| 4339 self.assertEqual(2, len(z.namelist())) | |
| 4340 self.assertFalse('DICOMDIR' in z.namelist()) | |
| 4341 | |
|
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|
4342 info = DoGet(_REMOTE, '/jobs/%s' % job) |
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|
4343 self.assertEqual(0, info['Content']['ArchiveSizeMB']) # New in Orthanc 1.8.1 |
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|
4344 self.assertEqual(2, info['Content']['InstancesCount']) |
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|
4345 self.assertEqual(0, info['Content']['UncompressedSizeMB']) |
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|
4346 |
| 187 | 4347 job = MonitorJob2(_REMOTE, lambda: DoPost |
| 4348 (_REMOTE, '/tools/create-media', { | |
| 4349 'Synchronous' : False, | |
| 4350 'Resources' : [ kneeT1, kneeT2 ], | |
| 4351 })) | |
| 4352 | |
| 4353 z = GetArchive(_REMOTE, '/jobs/%s/archive' % job) | |
| 4354 self.assertEqual(3, len(z.namelist())) | |
| 4355 self.assertTrue('DICOMDIR' in z.namelist()) | |
|
188
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|
4356 |
|
354
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|
4357 self.assertEqual(0, info['Content']['ArchiveSizeMB']) # New in Orthanc 1.8.1 |
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|
4358 self.assertEqual(2, info['Content']['InstancesCount']) |
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|
4359 self.assertEqual(0, info['Content']['UncompressedSizeMB']) |
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|
4360 |
| 187 | 4361 |
|
188
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changeset
|
4362 def test_queries_hierarchy(self): |
|
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|
4363 UploadInstance(_REMOTE, 'Knee/T1/IM-0001-0001.dcm') |
|
189
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|
4364 UploadInstance(_REMOTE, 'Brainix/Flair/IM-0001-0001.dcm') |
|
188
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|
4365 |
|
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diff
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|
4366 tags = { |
|
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|
4367 'NumberOfPatientRelatedInstances' : '', |
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|
4368 'NumberOfPatientRelatedSeries' : '', |
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|
4369 'NumberOfPatientRelatedStudies' : '', |
|
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|
4370 'NumberOfStudyRelatedInstances' : '', |
|
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|
4371 'NumberOfStudyRelatedSeries' : '', |
|
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|
4372 'NumberOfSeriesRelatedInstances' : '', |
|
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|
4373 } |
|
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diff
changeset
|
4374 |
|
189
11719f19bd62
test_dicom_disk_size
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diff
changeset
|
4375 tags2 = copy.copy(tags) |
|
11719f19bd62
test_dicom_disk_size
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diff
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|
4376 tags2['PatientID'] = '887' # Only consider the "Knee" patient |
|
11719f19bd62
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diff
changeset
|
4377 |
|
188
7d585263808b
new test: test_queries_hierarchy
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diff
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|
4378 patient = DoPost(_REMOTE, '/modalities/self/query', { |
|
7d585263808b
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|
4379 'Level' : 'Patient', |
|
189
11719f19bd62
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|
4380 'Query' : tags2 |
|
188
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|
4381 }) ['ID'] |
|
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diff
changeset
|
4382 |
|
7d585263808b
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diff
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|
4383 study = DoPost(_REMOTE, '/modalities/self/query', { |
|
7d585263808b
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|
4384 'Level' : 'Study', |
|
189
11719f19bd62
test_dicom_disk_size
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diff
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|
4385 'Query' : tags2 |
|
188
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|
4386 }) ['ID'] |
|
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diff
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|
4387 |
|
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diff
changeset
|
4388 series = DoPost(_REMOTE, '/modalities/self/query', { |
|
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|
4389 'Level' : 'Series', |
|
189
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|
4390 'Query' : tags2 |
|
188
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|
4391 }) ['ID'] |
|
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diff
changeset
|
4392 |
|
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diff
changeset
|
4393 instance = DoPost(_REMOTE, '/modalities/self/query', { |
|
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|
4394 'Level' : 'Instance', |
|
189
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|
4395 'Query' : tags2 |
|
188
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|
4396 }) ['ID'] |
|
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|
4397 |
|
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diff
changeset
|
4398 p = DoGet(_REMOTE, '/queries/%s/answers?expand&simplify' % patient) |
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|
4399 self.assertEqual(1, len(p)) |
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|
4400 self.assertEqual('887', p[0]['PatientID']) |
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|
4401 self.assertEqual('1', p[0]['NumberOfPatientRelatedInstances']) |
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|
4402 self.assertEqual('1', p[0]['NumberOfPatientRelatedSeries']) |
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|
4403 self.assertEqual('1', p[0]['NumberOfPatientRelatedStudies']) |
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|
4404 self.assertFalse('NumberOfStudyRelatedInstances' in p[0]) |
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|
4405 self.assertFalse('NumberOfStudyRelatedSeries' in p[0]) |
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|
4406 self.assertFalse('NumberOfSeriesRelatedInstances' in p[0]) |
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|
4407 |
|
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|
4408 p = DoGet(_REMOTE, '/queries/%s/answers?expand&simplify' % study) |
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4409 self.assertEqual(1, len(p)) |
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|
4410 self.assertEqual('2.16.840.1.113669.632.20.121711.10000160881', p[0]['StudyInstanceUID']) |
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|
4411 self.assertEqual('1', p[0]['NumberOfStudyRelatedInstances']) |
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4412 self.assertEqual('1', p[0]['NumberOfStudyRelatedSeries']) |
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4413 self.assertFalse('NumberOfPatientRelatedInstances' in p[0]) |
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4414 self.assertFalse('NumberOfPatientRelatedSeries' in p[0]) |
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4415 self.assertFalse('NumberOfPatientRelatedInstances' in p[0]) |
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diff
changeset
|
4416 self.assertFalse('NumberOfSeriesRelatedInstances' in p[0]) |
|
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new test: test_queries_hierarchy
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diff
changeset
|
4417 |
|
7d585263808b
new test: test_queries_hierarchy
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diff
changeset
|
4418 p = DoGet(_REMOTE, '/queries/%s/answers?expand&simplify' % series) |
|
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new test: test_queries_hierarchy
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diff
changeset
|
4419 self.assertEqual(1, len(p)) |
|
7d585263808b
new test: test_queries_hierarchy
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diff
changeset
|
4420 self.assertEqual('1.3.46.670589.11.17521.5.0.3124.2008081908564160709', p[0]['SeriesInstanceUID']) |
|
7d585263808b
new test: test_queries_hierarchy
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diff
changeset
|
4421 self.assertEqual('1', p[0]['NumberOfSeriesRelatedInstances']) |
|
7d585263808b
new test: test_queries_hierarchy
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diff
changeset
|
4422 self.assertFalse('NumberOfPatientRelatedInstances' in p[0]) |
|
7d585263808b
new test: test_queries_hierarchy
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diff
changeset
|
4423 self.assertFalse('NumberOfPatientRelatedSeries' in p[0]) |
|
7d585263808b
new test: test_queries_hierarchy
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diff
changeset
|
4424 self.assertFalse('NumberOfPatientRelatedInstances' in p[0]) |
|
7d585263808b
new test: test_queries_hierarchy
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diff
changeset
|
4425 self.assertFalse('NumberOfStudyRelatedInstances' in p[0]) |
|
7d585263808b
new test: test_queries_hierarchy
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diff
changeset
|
4426 self.assertFalse('NumberOfStudyRelatedSeries' in p[0]) |
|
7d585263808b
new test: test_queries_hierarchy
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diff
changeset
|
4427 |
|
7d585263808b
new test: test_queries_hierarchy
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diff
changeset
|
4428 p = DoGet(_REMOTE, '/queries/%s/answers?expand&simplify' % instance) |
|
7d585263808b
new test: test_queries_hierarchy
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diff
changeset
|
4429 self.assertEqual(1, len(p)) |
|
7d585263808b
new test: test_queries_hierarchy
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diff
changeset
|
4430 self.assertEqual('1.3.46.670589.11.17521.5.0.3124.2008081908590448738', p[0]['SOPInstanceUID']) |
|
7d585263808b
new test: test_queries_hierarchy
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parents:
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diff
changeset
|
4431 |
|
7d585263808b
new test: test_queries_hierarchy
Sebastien Jodogne <s.jodogne@gmail.com>
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diff
changeset
|
4432 j = DoPost(_REMOTE, '/queries/%s/answers/0/query-studies' % patient, |
|
7d585263808b
new test: test_queries_hierarchy
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parents:
187
diff
changeset
|
4433 { 'Query' : tags }) ['ID'] |
|
7d585263808b
new test: test_queries_hierarchy
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parents:
187
diff
changeset
|
4434 self.assertEqual(DoGet(_REMOTE, '/queries/%s/answers?expand&simplify' % j), |
|
7d585263808b
new test: test_queries_hierarchy
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
187
diff
changeset
|
4435 DoGet(_REMOTE, '/queries/%s/answers?expand&simplify' % study)) |
|
189
11719f19bd62
test_dicom_disk_size
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
188
diff
changeset
|
4436 |
|
188
7d585263808b
new test: test_queries_hierarchy
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diff
changeset
|
4437 j = DoPost(_REMOTE, '/queries/%s/answers/0/query-series' % patient, |
|
7d585263808b
new test: test_queries_hierarchy
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parents:
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diff
changeset
|
4438 { 'Query' : tags }) ['ID'] |
|
7d585263808b
new test: test_queries_hierarchy
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parents:
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diff
changeset
|
4439 self.assertEqual(DoGet(_REMOTE, '/queries/%s/answers?expand&simplify' % j), |
|
7d585263808b
new test: test_queries_hierarchy
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
187
diff
changeset
|
4440 DoGet(_REMOTE, '/queries/%s/answers?expand&simplify' % series)) |
|
7d585263808b
new test: test_queries_hierarchy
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parents:
187
diff
changeset
|
4441 |
|
7d585263808b
new test: test_queries_hierarchy
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parents:
187
diff
changeset
|
4442 j = DoPost(_REMOTE, '/queries/%s/answers/0/query-instances' % patient, |
|
7d585263808b
new test: test_queries_hierarchy
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parents:
187
diff
changeset
|
4443 { 'Query' : tags }) ['ID'] |
|
7d585263808b
new test: test_queries_hierarchy
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parents:
187
diff
changeset
|
4444 self.assertEqual(DoGet(_REMOTE, '/queries/%s/answers?expand&simplify' % j), |
|
7d585263808b
new test: test_queries_hierarchy
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
187
diff
changeset
|
4445 DoGet(_REMOTE, '/queries/%s/answers?expand&simplify' % instance)) |
|
7d585263808b
new test: test_queries_hierarchy
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parents:
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diff
changeset
|
4446 |
|
7d585263808b
new test: test_queries_hierarchy
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parents:
187
diff
changeset
|
4447 j = DoPost(_REMOTE, '/queries/%s/answers/0/query-series' % study, |
|
7d585263808b
new test: test_queries_hierarchy
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
187
diff
changeset
|
4448 { 'Query' : tags }) ['ID'] |
|
7d585263808b
new test: test_queries_hierarchy
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
187
diff
changeset
|
4449 self.assertEqual(DoGet(_REMOTE, '/queries/%s/answers?expand&simplify' % j), |
|
7d585263808b
new test: test_queries_hierarchy
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
187
diff
changeset
|
4450 DoGet(_REMOTE, '/queries/%s/answers?expand&simplify' % series)) |
|
7d585263808b
new test: test_queries_hierarchy
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parents:
187
diff
changeset
|
4451 |
|
7d585263808b
new test: test_queries_hierarchy
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
187
diff
changeset
|
4452 j = DoPost(_REMOTE, '/queries/%s/answers/0/query-instances' % study, |
|
7d585263808b
new test: test_queries_hierarchy
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parents:
187
diff
changeset
|
4453 { 'Query' : tags }) ['ID'] |
|
7d585263808b
new test: test_queries_hierarchy
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parents:
187
diff
changeset
|
4454 self.assertEqual(DoGet(_REMOTE, '/queries/%s/answers?expand&simplify' % j), |
|
7d585263808b
new test: test_queries_hierarchy
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parents:
187
diff
changeset
|
4455 DoGet(_REMOTE, '/queries/%s/answers?expand&simplify' % instance)) |
|
7d585263808b
new test: test_queries_hierarchy
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parents:
187
diff
changeset
|
4456 |
|
7d585263808b
new test: test_queries_hierarchy
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
187
diff
changeset
|
4457 j = DoPost(_REMOTE, '/queries/%s/answers/0/query-instances' % series, |
|
7d585263808b
new test: test_queries_hierarchy
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
187
diff
changeset
|
4458 { 'Query' : tags }) ['ID'] |
|
7d585263808b
new test: test_queries_hierarchy
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parents:
187
diff
changeset
|
4459 self.assertEqual(DoGet(_REMOTE, '/queries/%s/answers?expand&simplify' % j), |
|
7d585263808b
new test: test_queries_hierarchy
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
187
diff
changeset
|
4460 DoGet(_REMOTE, '/queries/%s/answers?expand&simplify' % instance)) |
|
7d585263808b
new test: test_queries_hierarchy
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
187
diff
changeset
|
4461 |
|
7d585263808b
new test: test_queries_hierarchy
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
187
diff
changeset
|
4462 |
|
189
11719f19bd62
test_dicom_disk_size
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
188
diff
changeset
|
4463 def test_dicom_disk_size(self): |
|
11719f19bd62
test_dicom_disk_size
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
188
diff
changeset
|
4464 dicomSize = 0 |
|
11719f19bd62
test_dicom_disk_size
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
188
diff
changeset
|
4465 |
|
379
097329b67509
fix tests if StorageCompression is true
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
378
diff
changeset
|
4466 a = UploadInstance(_REMOTE, 'Brainix/Flair/IM-0001-0001.dcm') ['ID'] |
|
097329b67509
fix tests if StorageCompression is true
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
378
diff
changeset
|
4467 isCompressed = (DoGet(_REMOTE, '/instances/%s/attachments/dicom/is-compressed' % a) != 0) |
|
189
11719f19bd62
test_dicom_disk_size
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
188
diff
changeset
|
4468 |
|
11719f19bd62
test_dicom_disk_size
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
188
diff
changeset
|
4469 for i in range(2): |
|
11719f19bd62
test_dicom_disk_size
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
188
diff
changeset
|
4470 p = 'Knee/T%d/IM-0001-0001.dcm' % (i + 1) |
|
11719f19bd62
test_dicom_disk_size
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parents:
188
diff
changeset
|
4471 UploadInstance(_REMOTE, p) |
|
11719f19bd62
test_dicom_disk_size
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
188
diff
changeset
|
4472 dicomSize += os.path.getsize(GetDatabasePath(p)) |
|
11719f19bd62
test_dicom_disk_size
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
188
diff
changeset
|
4473 |
|
11719f19bd62
test_dicom_disk_size
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
188
diff
changeset
|
4474 s = DoGet(_REMOTE, '/patients/ca29faea-b6a0e17f-067743a1-8b778011-a48b2a17/statistics') # Consider Knee patient |
|
11719f19bd62
test_dicom_disk_size
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
188
diff
changeset
|
4475 self.assertEqual(2, s['CountInstances']) |
|
11719f19bd62
test_dicom_disk_size
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
188
diff
changeset
|
4476 self.assertEqual(2, s['CountSeries']) |
|
11719f19bd62
test_dicom_disk_size
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
188
diff
changeset
|
4477 self.assertEqual(1, s['CountStudies']) |
|
379
097329b67509
fix tests if StorageCompression is true
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
378
diff
changeset
|
4478 |
|
189
11719f19bd62
test_dicom_disk_size
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
188
diff
changeset
|
4479 self.assertEqual(dicomSize, int(s['DicomUncompressedSize'])) |
|
11719f19bd62
test_dicom_disk_size
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
188
diff
changeset
|
4480 self.assertLess(dicomSize, int(s['UncompressedSize'])) |
|
379
097329b67509
fix tests if StorageCompression is true
Sebastien Jodogne <s.jodogne@gmail.com>
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378
diff
changeset
|
4481 |
|
097329b67509
fix tests if StorageCompression is true
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
378
diff
changeset
|
4482 if isCompressed: |
|
097329b67509
fix tests if StorageCompression is true
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
378
diff
changeset
|
4483 self.assertGreater(dicomSize, int(s['DicomDiskSize'])) |
|
097329b67509
fix tests if StorageCompression is true
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
378
diff
changeset
|
4484 self.assertGreater(s['UncompressedSize'], s['DiskSize']) |
|
097329b67509
fix tests if StorageCompression is true
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
378
diff
changeset
|
4485 else: |
|
097329b67509
fix tests if StorageCompression is true
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
378
diff
changeset
|
4486 self.assertEqual(dicomSize, int(s['DicomDiskSize'])) |
|
097329b67509
fix tests if StorageCompression is true
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
378
diff
changeset
|
4487 self.assertEqual(s['UncompressedSize'], s['DiskSize']) |
|
097329b67509
fix tests if StorageCompression is true
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
378
diff
changeset
|
4488 |
|
202
f26f9ae9c599
test_changes_2 and test_bitbucket_issue_124
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
195
diff
changeset
|
4489 |
|
f26f9ae9c599
test_changes_2 and test_bitbucket_issue_124
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
195
diff
changeset
|
4490 def test_changes_2(self): |
|
f26f9ae9c599
test_changes_2 and test_bitbucket_issue_124
Sebastien Jodogne <s.jodogne@gmail.com>
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195
diff
changeset
|
4491 # More consistent behavior since Orthanc 1.5.2 |
|
f26f9ae9c599
test_changes_2 and test_bitbucket_issue_124
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diff
changeset
|
4492 # https://groups.google.com/d/msg/orthanc-users/QhzB6vxYeZ0/YxabgqpfBAAJ |
|
f26f9ae9c599
test_changes_2 and test_bitbucket_issue_124
Sebastien Jodogne <s.jodogne@gmail.com>
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diff
changeset
|
4493 |
|
f26f9ae9c599
test_changes_2 and test_bitbucket_issue_124
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195
diff
changeset
|
4494 # Make sure that this is not the first change |
|
f26f9ae9c599
test_changes_2 and test_bitbucket_issue_124
Sebastien Jodogne <s.jodogne@gmail.com>
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diff
changeset
|
4495 self.assertEqual(0, len(DoGet(_REMOTE, '/instances'))) |
|
f26f9ae9c599
test_changes_2 and test_bitbucket_issue_124
Sebastien Jodogne <s.jodogne@gmail.com>
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diff
changeset
|
4496 a = UploadInstance(_REMOTE, 'DummyCT.dcm')['ID'] |
|
f26f9ae9c599
test_changes_2 and test_bitbucket_issue_124
Sebastien Jodogne <s.jodogne@gmail.com>
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diff
changeset
|
4497 self.assertEqual(1, len(DoGet(_REMOTE, '/instances'))) |
|
f26f9ae9c599
test_changes_2 and test_bitbucket_issue_124
Sebastien Jodogne <s.jodogne@gmail.com>
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diff
changeset
|
4498 DoDelete(_REMOTE, '/instances/%s' % a) |
|
f26f9ae9c599
test_changes_2 and test_bitbucket_issue_124
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diff
changeset
|
4499 |
|
f26f9ae9c599
test_changes_2 and test_bitbucket_issue_124
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diff
changeset
|
4500 # No more instance, but there were previous changes |
|
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test_changes_2 and test_bitbucket_issue_124
Sebastien Jodogne <s.jodogne@gmail.com>
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diff
changeset
|
4501 self.assertEqual(0, len(DoGet(_REMOTE, '/instances'))) |
|
f26f9ae9c599
test_changes_2 and test_bitbucket_issue_124
Sebastien Jodogne <s.jodogne@gmail.com>
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diff
changeset
|
4502 |
|
f26f9ae9c599
test_changes_2 and test_bitbucket_issue_124
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diff
changeset
|
4503 c = DoGet(_REMOTE, '/changes') |
|
f26f9ae9c599
test_changes_2 and test_bitbucket_issue_124
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diff
changeset
|
4504 self.assertEqual(0, len(c['Changes'])) |
|
f26f9ae9c599
test_changes_2 and test_bitbucket_issue_124
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diff
changeset
|
4505 self.assertTrue(c['Done']) |
|
f26f9ae9c599
test_changes_2 and test_bitbucket_issue_124
Sebastien Jodogne <s.jodogne@gmail.com>
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diff
changeset
|
4506 seq = c['Last'] |
|
f26f9ae9c599
test_changes_2 and test_bitbucket_issue_124
Sebastien Jodogne <s.jodogne@gmail.com>
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diff
changeset
|
4507 |
|
f26f9ae9c599
test_changes_2 and test_bitbucket_issue_124
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diff
changeset
|
4508 c = DoGet(_REMOTE, '/changes?last') |
|
f26f9ae9c599
test_changes_2 and test_bitbucket_issue_124
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diff
changeset
|
4509 self.assertEqual(0, len(c['Changes'])) |
|
f26f9ae9c599
test_changes_2 and test_bitbucket_issue_124
Sebastien Jodogne <s.jodogne@gmail.com>
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diff
changeset
|
4510 self.assertTrue(c['Done']) |
|
f26f9ae9c599
test_changes_2 and test_bitbucket_issue_124
Sebastien Jodogne <s.jodogne@gmail.com>
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diff
changeset
|
4511 self.assertEqual(seq, c['Last']) |
|
f26f9ae9c599
test_changes_2 and test_bitbucket_issue_124
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diff
changeset
|
4512 |
|
f26f9ae9c599
test_changes_2 and test_bitbucket_issue_124
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diff
changeset
|
4513 c = DoGet(_REMOTE, '/changes?since=%d' % (seq + 1000)) |
|
f26f9ae9c599
test_changes_2 and test_bitbucket_issue_124
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
195
diff
changeset
|
4514 self.assertEqual(0, len(c['Changes'])) |
|
f26f9ae9c599
test_changes_2 and test_bitbucket_issue_124
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
195
diff
changeset
|
4515 self.assertTrue(c['Done']) |
|
f26f9ae9c599
test_changes_2 and test_bitbucket_issue_124
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
195
diff
changeset
|
4516 self.assertEqual(seq, c['Last']) |
|
f26f9ae9c599
test_changes_2 and test_bitbucket_issue_124
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
195
diff
changeset
|
4517 |
|
f26f9ae9c599
test_changes_2 and test_bitbucket_issue_124
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
195
diff
changeset
|
4518 # Add one instance |
|
f26f9ae9c599
test_changes_2 and test_bitbucket_issue_124
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
195
diff
changeset
|
4519 UploadInstance(_REMOTE, 'DummyCT.dcm') |
|
f26f9ae9c599
test_changes_2 and test_bitbucket_issue_124
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
195
diff
changeset
|
4520 self.assertEqual(1, len(DoGet(_REMOTE, '/instances'))) |
|
f26f9ae9c599
test_changes_2 and test_bitbucket_issue_124
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
195
diff
changeset
|
4521 |
|
f26f9ae9c599
test_changes_2 and test_bitbucket_issue_124
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
195
diff
changeset
|
4522 c = DoGet(_REMOTE, '/changes') |
|
f26f9ae9c599
test_changes_2 and test_bitbucket_issue_124
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
195
diff
changeset
|
4523 self.assertEqual(4, len(c['Changes'])) |
|
f26f9ae9c599
test_changes_2 and test_bitbucket_issue_124
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
195
diff
changeset
|
4524 self.assertTrue(c['Done']) |
|
f26f9ae9c599
test_changes_2 and test_bitbucket_issue_124
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
195
diff
changeset
|
4525 self.assertEqual(seq + 4, c['Last']) |
|
f26f9ae9c599
test_changes_2 and test_bitbucket_issue_124
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
195
diff
changeset
|
4526 |
|
f26f9ae9c599
test_changes_2 and test_bitbucket_issue_124
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
195
diff
changeset
|
4527 c = DoGet(_REMOTE, '/changes?last') |
|
f26f9ae9c599
test_changes_2 and test_bitbucket_issue_124
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
195
diff
changeset
|
4528 self.assertEqual(1, len(c['Changes'])) |
|
f26f9ae9c599
test_changes_2 and test_bitbucket_issue_124
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
195
diff
changeset
|
4529 self.assertTrue(c['Done']) |
|
f26f9ae9c599
test_changes_2 and test_bitbucket_issue_124
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
195
diff
changeset
|
4530 self.assertEqual(seq + 4, c['Last']) |
|
f26f9ae9c599
test_changes_2 and test_bitbucket_issue_124
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
195
diff
changeset
|
4531 |
|
f26f9ae9c599
test_changes_2 and test_bitbucket_issue_124
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
195
diff
changeset
|
4532 c = DoGet(_REMOTE, '/changes?since=%d' % (seq + 1000)) |
|
f26f9ae9c599
test_changes_2 and test_bitbucket_issue_124
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
195
diff
changeset
|
4533 self.assertEqual(0, len(c['Changes'])) |
|
f26f9ae9c599
test_changes_2 and test_bitbucket_issue_124
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
195
diff
changeset
|
4534 self.assertTrue(c['Done']) |
|
f26f9ae9c599
test_changes_2 and test_bitbucket_issue_124
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
195
diff
changeset
|
4535 self.assertEqual(seq + 4, c['Last']) |
|
f26f9ae9c599
test_changes_2 and test_bitbucket_issue_124
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
195
diff
changeset
|
4536 |
|
f26f9ae9c599
test_changes_2 and test_bitbucket_issue_124
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
195
diff
changeset
|
4537 # Remove the uploaded instance |
|
f26f9ae9c599
test_changes_2 and test_bitbucket_issue_124
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
195
diff
changeset
|
4538 DoDelete(_REMOTE, '/instances/%s' % a) |
|
f26f9ae9c599
test_changes_2 and test_bitbucket_issue_124
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
195
diff
changeset
|
4539 self.assertEqual(0, len(DoGet(_REMOTE, '/instances'))) |
|
f26f9ae9c599
test_changes_2 and test_bitbucket_issue_124
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
195
diff
changeset
|
4540 |
|
f26f9ae9c599
test_changes_2 and test_bitbucket_issue_124
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
195
diff
changeset
|
4541 c = DoGet(_REMOTE, '/changes') |
|
f26f9ae9c599
test_changes_2 and test_bitbucket_issue_124
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
195
diff
changeset
|
4542 self.assertEqual(0, len(c['Changes'])) |
|
f26f9ae9c599
test_changes_2 and test_bitbucket_issue_124
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
195
diff
changeset
|
4543 self.assertTrue(c['Done']) |
|
f26f9ae9c599
test_changes_2 and test_bitbucket_issue_124
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
195
diff
changeset
|
4544 self.assertEqual(seq + 4, c['Last']) |
|
f26f9ae9c599
test_changes_2 and test_bitbucket_issue_124
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
195
diff
changeset
|
4545 |
|
f26f9ae9c599
test_changes_2 and test_bitbucket_issue_124
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
195
diff
changeset
|
4546 c = DoGet(_REMOTE, '/changes?last') |
|
f26f9ae9c599
test_changes_2 and test_bitbucket_issue_124
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
195
diff
changeset
|
4547 self.assertEqual(0, len(c['Changes'])) |
|
f26f9ae9c599
test_changes_2 and test_bitbucket_issue_124
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
195
diff
changeset
|
4548 self.assertTrue(c['Done']) |
|
f26f9ae9c599
test_changes_2 and test_bitbucket_issue_124
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
195
diff
changeset
|
4549 self.assertEqual(seq + 4, c['Last']) |
|
f26f9ae9c599
test_changes_2 and test_bitbucket_issue_124
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
195
diff
changeset
|
4550 |
|
f26f9ae9c599
test_changes_2 and test_bitbucket_issue_124
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
195
diff
changeset
|
4551 c = DoGet(_REMOTE, '/changes?since=%d' % (seq + 1000)) |
|
f26f9ae9c599
test_changes_2 and test_bitbucket_issue_124
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
195
diff
changeset
|
4552 self.assertEqual(0, len(c['Changes'])) |
|
f26f9ae9c599
test_changes_2 and test_bitbucket_issue_124
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
195
diff
changeset
|
4553 self.assertTrue(c['Done']) |
|
f26f9ae9c599
test_changes_2 and test_bitbucket_issue_124
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
195
diff
changeset
|
4554 self.assertEqual(seq + 4, c['Last']) |
|
f26f9ae9c599
test_changes_2 and test_bitbucket_issue_124
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
195
diff
changeset
|
4555 |
|
f26f9ae9c599
test_changes_2 and test_bitbucket_issue_124
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
195
diff
changeset
|
4556 |
|
f26f9ae9c599
test_changes_2 and test_bitbucket_issue_124
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
195
diff
changeset
|
4557 def test_bitbucket_issue_124(self): |
|
f26f9ae9c599
test_changes_2 and test_bitbucket_issue_124
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
195
diff
changeset
|
4558 a = UploadInstance(_REMOTE, 'Issue124.dcm')['ID'] |
|
f26f9ae9c599
test_changes_2 and test_bitbucket_issue_124
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
195
diff
changeset
|
4559 |
|
f26f9ae9c599
test_changes_2 and test_bitbucket_issue_124
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
195
diff
changeset
|
4560 z = GetArchive(_REMOTE, '/patients/%s/media' % a) |
|
f26f9ae9c599
test_changes_2 and test_bitbucket_issue_124
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
195
diff
changeset
|
4561 self.assertEqual(2, len(z.namelist())) |
|
207
a515eec74078
test_invalid_findscp
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
202
diff
changeset
|
4562 |
|
a515eec74078
test_invalid_findscp
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
202
diff
changeset
|
4563 |
|
a515eec74078
test_invalid_findscp
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
202
diff
changeset
|
4564 def test_invalid_findscp(self): |
|
a515eec74078
test_invalid_findscp
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
202
diff
changeset
|
4565 UploadInstance(_REMOTE, 'DummyCT.dcm') |
|
a515eec74078
test_invalid_findscp
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
202
diff
changeset
|
4566 findscu = CallFindScu([ '-S', '-k', '8,52=IMAGE', '-k', '8,16', '-k', '2,2' ]) |
|
a515eec74078
test_invalid_findscp
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
202
diff
changeset
|
4567 self.assertEqual(0, len(re.findall('\(0002,0002\)', findscu))) |
|
208
2444c9a7c422
test_bitbucket_issue_90
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
207
diff
changeset
|
4568 |
|
2444c9a7c422
test_bitbucket_issue_90
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
207
diff
changeset
|
4569 |
|
2444c9a7c422
test_bitbucket_issue_90
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
207
diff
changeset
|
4570 def test_bitbucket_issue_90(self): |
|
2444c9a7c422
test_bitbucket_issue_90
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
207
diff
changeset
|
4571 def CountDicomResults(sex): |
|
2444c9a7c422
test_bitbucket_issue_90
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
207
diff
changeset
|
4572 a = CallFindScu([ '-S', '-k', '8,52=STUDY', '-k', sex ]) |
|
2444c9a7c422
test_bitbucket_issue_90
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
207
diff
changeset
|
4573 return len(re.findall('\(0010,0040\)', a)) |
|
2444c9a7c422
test_bitbucket_issue_90
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
207
diff
changeset
|
4574 |
|
2444c9a7c422
test_bitbucket_issue_90
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
207
diff
changeset
|
4575 def CountRestResults(sex): |
|
2444c9a7c422
test_bitbucket_issue_90
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
207
diff
changeset
|
4576 a = DoPost(_REMOTE, '/tools/find', |
|
2444c9a7c422
test_bitbucket_issue_90
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
207
diff
changeset
|
4577 { 'Level' : 'Study', 'Query' : { 'PatientSex' : sex } }) |
|
2444c9a7c422
test_bitbucket_issue_90
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
207
diff
changeset
|
4578 return len(a) |
|
2444c9a7c422
test_bitbucket_issue_90
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
207
diff
changeset
|
4579 |
|
2444c9a7c422
test_bitbucket_issue_90
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
207
diff
changeset
|
4580 # Just like the "CR000000.dcm" of the issue, the test image |
|
2444c9a7c422
test_bitbucket_issue_90
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
207
diff
changeset
|
4581 # "DummyCT.dcm" has the tag PatientSex (0010,0040) unset |
|
2444c9a7c422
test_bitbucket_issue_90
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
207
diff
changeset
|
4582 UploadInstance(_REMOTE, 'DummyCT.dcm') |
|
2444c9a7c422
test_bitbucket_issue_90
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
207
diff
changeset
|
4583 |
|
2444c9a7c422
test_bitbucket_issue_90
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
207
diff
changeset
|
4584 # Test that the behavior of DICOM vs. REST API is consistent on missing tags |
|
2444c9a7c422
test_bitbucket_issue_90
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
207
diff
changeset
|
4585 |
|
2444c9a7c422
test_bitbucket_issue_90
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
207
diff
changeset
|
4586 # In wildcard constraints, the patient sex must be set for a match to occur |
|
2444c9a7c422
test_bitbucket_issue_90
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
207
diff
changeset
|
4587 self.assertEqual(0, CountDicomResults('PatientSex=*')) |
|
2444c9a7c422
test_bitbucket_issue_90
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
207
diff
changeset
|
4588 self.assertEqual(0, CountRestResults('*')) |
|
2444c9a7c422
test_bitbucket_issue_90
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
207
diff
changeset
|
4589 |
|
2444c9a7c422
test_bitbucket_issue_90
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
207
diff
changeset
|
4590 # In single-valued constraints, the patient sex must be set |
|
2444c9a7c422
test_bitbucket_issue_90
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
207
diff
changeset
|
4591 self.assertEqual(0, CountDicomResults('PatientSex=F')) |
|
2444c9a7c422
test_bitbucket_issue_90
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
207
diff
changeset
|
4592 self.assertEqual(0, CountDicomResults('PatientSex=M')) |
|
2444c9a7c422
test_bitbucket_issue_90
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
207
diff
changeset
|
4593 self.assertEqual(0, CountRestResults('F')) |
|
2444c9a7c422
test_bitbucket_issue_90
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
207
diff
changeset
|
4594 self.assertEqual(0, CountRestResults('M')) |
|
2444c9a7c422
test_bitbucket_issue_90
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
207
diff
changeset
|
4595 |
|
2444c9a7c422
test_bitbucket_issue_90
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
207
diff
changeset
|
4596 # Empty constraints are only used to ask the actual value of |
|
2444c9a7c422
test_bitbucket_issue_90
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parents:
207
diff
changeset
|
4597 # the tag to be added to the *answer*. The tag should not used |
|
2444c9a7c422
test_bitbucket_issue_90
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parents:
207
diff
changeset
|
4598 # as a filter in such a situation. |
|
2444c9a7c422
test_bitbucket_issue_90
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
207
diff
changeset
|
4599 self.assertEqual(1, CountDicomResults('PatientSex')) |
|
2444c9a7c422
test_bitbucket_issue_90
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
207
diff
changeset
|
4600 self.assertEqual(1, CountDicomResults('PatientSex=')) |
|
2444c9a7c422
test_bitbucket_issue_90
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
207
diff
changeset
|
4601 self.assertEqual(1, CountRestResults('')) # This check fails on Orthanc <= 1.5.2 (issue 90) |
|
210
2c50c8f340c2
test_rest_modalities_in_study
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
208
diff
changeset
|
4602 |
|
2c50c8f340c2
test_rest_modalities_in_study
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parents:
208
diff
changeset
|
4603 |
|
2c50c8f340c2
test_rest_modalities_in_study
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parents:
208
diff
changeset
|
4604 def test_rest_modalities_in_study(self): |
|
2c50c8f340c2
test_rest_modalities_in_study
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diff
changeset
|
4605 # Tests a regression that is present in Orthanc 1.5.2 and 1.5.3 |
|
2c50c8f340c2
test_rest_modalities_in_study
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diff
changeset
|
4606 # https://groups.google.com/d/msg/orthanc-users/7lZyG3wpx-M/uOXzAzVCFwAJ |
|
2c50c8f340c2
test_rest_modalities_in_study
Sebastien Jodogne <s.jodogne@gmail.com>
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diff
changeset
|
4607 UploadInstance(_REMOTE, 'ColorTestImageJ.dcm') |
|
2c50c8f340c2
test_rest_modalities_in_study
Sebastien Jodogne <s.jodogne@gmail.com>
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208
diff
changeset
|
4608 |
|
2c50c8f340c2
test_rest_modalities_in_study
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
208
diff
changeset
|
4609 a = DoPost(_REMOTE, '/tools/find', { 'Level' : 'Study', |
|
2c50c8f340c2
test_rest_modalities_in_study
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
208
diff
changeset
|
4610 'Query' : { 'ModalitiesInStudy' : 'US' }}) |
|
2c50c8f340c2
test_rest_modalities_in_study
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
208
diff
changeset
|
4611 self.assertEqual(0, len(a)) |
|
2c50c8f340c2
test_rest_modalities_in_study
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
208
diff
changeset
|
4612 |
|
2c50c8f340c2
test_rest_modalities_in_study
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
208
diff
changeset
|
4613 a = DoPost(_REMOTE, '/tools/find', { 'Level' : 'Study', |
|
2c50c8f340c2
test_rest_modalities_in_study
Sebastien Jodogne <s.jodogne@gmail.com>
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208
diff
changeset
|
4614 'Query' : { 'ModalitiesInStudy' : 'US\\CT' }}) |
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4615 self.assertEqual(1, len(a)) |
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4616 |
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4617 a = DoPost(_REMOTE, '/tools/find', { 'Level' : 'Study', |
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4618 'Query' : { 'ModalitiesInStudy' : 'CT' }}) |
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4619 self.assertEqual(1, len(a)) |
| 211 | 4620 |
| 4621 | |
| 4622 def test_series_status(self): | |
| 4623 def HasCompletedInChanges(): | |
| 4624 for c in DoGet(_REMOTE, '/changes?limit=1000&since=0')['Changes']: | |
| 4625 if c['ChangeType'] == 'CompletedSeries': | |
| 4626 return True; | |
| 4627 | |
| 4628 return False | |
| 4629 | |
| 4630 UploadInstance(_REMOTE, 'Knix/Loc/IM-0001-0001.dcm') | |
| 4631 series = '8ea120d7-5057d919-837dfbcc-ccd04e0f-7f3a94aa' | |
| 4632 self.assertEqual('Unknown', DoGet(_REMOTE, '/series/%s' % series)['Status']) | |
| 4633 self.assertFalse(HasCompletedInChanges()) | |
| 4634 | |
| 4635 series = 'ce25ecb6-ed79d004-5ae43ca7-3fc89bc5-67511614' | |
| 4636 | |
| 4637 for i in range(3): | |
| 4638 UploadInstance(_REMOTE, 'Series/Lena-%d.dcm' % (i + 1)) | |
| 4639 self.assertEqual('Missing', DoGet(_REMOTE, '/series/%s' % series)['Status']) | |
| 4640 self.assertFalse(HasCompletedInChanges()) | |
| 4641 | |
| 4642 UploadInstance(_REMOTE, 'Series/Lena-4.dcm') | |
| 4643 self.assertEqual('Complete', DoGet(_REMOTE, '/series/%s' % series)['Status']) | |
| 4644 self.assertTrue(HasCompletedInChanges()) | |
| 4645 | |
| 4646 DoDelete(_REMOTE, '/changes') | |
| 4647 self.assertFalse(HasCompletedInChanges()) | |
| 4648 | |
| 4649 UploadInstance(_REMOTE, 'Series/Lena-5.dcm') | |
| 4650 self.assertEqual('Inconsistent', DoGet(_REMOTE, '/series/%s' % series)['Status']) | |
| 4651 self.assertFalse(HasCompletedInChanges()) | |
| 4652 | |
| 215 | 4653 |
| 4654 def test_dicomweb(self): | |
| 4655 def Compare(dicom, reference): | |
| 4656 a = UploadInstance(_REMOTE, dicom) ['ID'] | |
| 4657 b = DoGet(_REMOTE, '/instances/%s/file' % a, | |
| 4658 headers = { 'Accept' : 'application/dicom+json' }) | |
| 4659 with open(GetDatabasePath(reference), 'rb') as c: | |
| 4660 d = json.load(c) | |
| 220 | 4661 AssertAlmostEqualRecursive(self, d, b) |
| 215 | 4662 |
| 4663 Compare('DummyCT.dcm', 'DummyCT.json') | |
| 4664 Compare('MarekLatin2.dcm', 'MarekLatin2.json') | |
| 4665 Compare('HierarchicalAnonymization/StructuredReports/IM0', | |
| 4666 'HierarchicalAnonymization/StructuredReports/IM0.json') | |
| 217 | 4667 |
| 4668 | |
| 4669 def test_issue_95_encodings(self): | |
| 319 | 4670 # https://bugs.orthanc-server.com/show_bug.cgi?id=95 |
| 217 | 4671 # Check out image: "../Database/Encodings/DavidClunie/charsettests.screenshot.png" |
| 4672 | |
| 4673 # Very useful tool: "file2" from package "file-kanji" | |
| 4674 | |
| 4675 def GetPatientName(dicom): | |
| 4676 i = UploadInstance(_REMOTE, dicom) ['ID'] | |
| 4677 j = DoGet(_REMOTE, '/instances/%s/tags?simplify' % i) | |
| 4678 return j['PatientName'] | |
| 4679 | |
| 4680 def ComparePatientName(name, dicom): | |
| 4681 self.assertEqual(name, GetPatientName(dicom)) | |
| 4682 | |
| 4683 # gdcmraw -t 10,10 -i SCSFREN -o /tmp/tag && uconv -f ISO-IR-100 -t UTF-8 /tmp/tag && echo | |
| 4684 ComparePatientName(u'Buc^Jérôme', 'Encodings/DavidClunie/SCSFREN') | |
| 4685 | |
| 4686 # gdcmraw -t 10,10 -i SCSI2 -o /tmp/tag && uconv -f KOREAN -t UTF-8 /tmp/tag && echo | |
| 4687 ComparePatientName(u'Hong^Gildong=洪^吉洞=홍^길동', 'Encodings/DavidClunie/SCSI2') # Since Orthanc 1.5.5 | |
| 4688 | |
| 4689 # gdcmraw -t 10,10 -i SCSX2 -o /tmp/tag && uconv -f GB18030 -t UTF-8 /tmp/tag && echo | |
| 4690 ComparePatientName(u'Wang^XiaoDong=王^小东=', 'Encodings/DavidClunie/SCSX2') | |
| 4691 | |
| 4692 # gdcmraw -t 10,10 -i SCSX1 -o /tmp/tag && cat /tmp/tag && echo | |
| 4693 ComparePatientName(u'Wang^XiaoDong=王^小東=', 'Encodings/DavidClunie/SCSX1') | |
| 4694 | |
| 4695 # gdcmraw -t 10,10 -i SCSH31 -o /tmp/tag && uconv -f JIS -t UTF-8 /tmp/tag && echo | |
| 4696 ComparePatientName(u'Yamada^Tarou=山田^太郎=やまだ^たろう', 'Encodings/DavidClunie/SCSH31') | |
| 4697 | |
| 4698 # gdcmraw -t 10,10 -i SCSGERM -o /tmp/tag && uconv -f ISO-IR-100 -t UTF-8 /tmp/tag && echo | |
| 4699 ComparePatientName(u'Äneas^Rüdiger', 'Encodings/DavidClunie/SCSGERM') | |
| 4700 | |
| 4701 # gdcmraw -t 10,10 -i SCSGREEK -o /tmp/tag && uconv -f ISO-IR-126 -t UTF-8 /tmp/tag && echo | |
| 4702 ComparePatientName(u'Διονυσιος', 'Encodings/DavidClunie/SCSGREEK') | |
| 4703 | |
| 4704 # gdcmraw -t 10,10 -i SCSRUSS -o /tmp/tag && uconv -f ISO-IR-144 -t UTF-8 /tmp/tag && echo | |
| 4705 ComparePatientName(u'Люкceмбypг', 'Encodings/DavidClunie/SCSRUSS') | |
| 4706 | |
| 4707 # gdcmraw -t 10,10 -i SCSHBRW -o /tmp/tag && uconv -f ISO-IR-138 -t UTF-8 /tmp/tag && echo | |
| 4708 # NB: Hebrew is a right-to-left encoding, copying/pasting from | |
| 4709 # Linux console into Emacs automatically reverse the string | |
| 4710 ComparePatientName(u'שרון^דבורה', 'Encodings/DavidClunie/SCSHBRW') | |
| 4711 | |
| 4712 # gdcmraw -t 10,10 -i SCSARAB -o /tmp/tag && uconv -f ISO-IR-127 -t UTF-8 /tmp/tag && echo | |
| 4713 # NB: Right-to-left as for Hebrew (SCSHBRW), and the Ubuntu console can't display such | |
| 4714 # characters by default, but copy/paste works with Emacs | |
| 4715 ComparePatientName(u'قباني^لنزار', 'Encodings/DavidClunie/SCSARAB') | |
| 4716 | |
| 4717 # SCSH32: This SpecificCharacterSet is composed of 2 | |
| 4718 # codepages: "ISO 2022 IR 13" (i.e. "SHIFT_JIS") until the | |
| 4719 # first equal, then "ISO 2022 IR 87" (i.e. "JIS") for the | |
| 4720 # remainer. Orthanc only takes into consideration the first | |
| 4721 # codepage: This is a limitation. | |
| 4722 # gdcmraw -t 10,10 -i SCSH32 -o /tmp/tag && cut -d '=' -f 1 /tmp/tag | uconv -f SHIFT_JIS -t UTF-8 | |
| 4723 self.assertTrue(GetPatientName('Encodings/DavidClunie/SCSH32').startswith(u'ﾔﾏﾀﾞ^ﾀﾛｳ=')) | |
|
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4724 |
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4725 |
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4726 def test_findscu_missing_tags(self): |
|
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diff
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4727 # dcmodify -e Rows DummyCTInvalidRows.dcm -gst -gse -gin |
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4728 UploadInstance(_REMOTE, 'DummyCT.dcm') |
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4729 UploadInstance(_REMOTE, 'DummyCTInvalidRows.dcm') |
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4730 |
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|
4731 i = CallFindScu([ '-k', '0008,0052=IMAGES', '-k', 'Rows', '-k', 'PatientName' ]) |
|
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4732 |
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4733 # We have 2 instances... |
|
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diff
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4734 patientNames = re.findall('\(0010,0010\).*?\[(.*?)\]', i) |
|
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4735 self.assertEqual(2, len(patientNames)) |
|
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4736 self.assertEqual('KNIX', patientNames[0]) |
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4737 self.assertEqual('KNIX', patientNames[1]) |
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4738 |
|
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diff
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|
4739 # ...but only 1 value for the "Rows" tag |
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|
4740 rows = re.findall('\(0028,0010\) US ([0-9]+)', i) |
|
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|
4741 self.assertEqual(1, len(rows)) |
|
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|
4742 self.assertEqual('512', rows[0]) |
|
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|
4743 |
|
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|
4744 |
|
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|
4745 |
|
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|
4746 def test_bitbucket_issue_131(self): |
|
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diff
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|
4747 # "Orthanc PACS silently fails to C-MOVE due to duplicate |
|
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|
4748 # StudyInstanceUID in it's database." |
| 319 | 4749 # https://bugs.orthanc-server.com/show_bug.cgi?id=131 |
|
219
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218
diff
changeset
|
4750 |
|
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test_bitbucket_issue_131
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218
diff
changeset
|
4751 # Insert 2 instances, with the same StudyInstanceUID, but with |
|
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|
4752 # different patient IDs. Orthanc will create 2 distincts |
|
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test_bitbucket_issue_131
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diff
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|
4753 # patients, and the hierarchy of resources above the two |
|
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test_bitbucket_issue_131
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diff
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|
4754 # instances will be fully disjoint. |
|
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diff
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|
4755 UploadInstance(_REMOTE, 'PatientIdsCollision/Issue131-a.dcm') |
|
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diff
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|
4756 UploadInstance(_REMOTE, 'PatientIdsCollision/Issue131-b.dcm') |
|
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|
4757 |
|
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diff
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|
4758 self.assertEqual(2, len(DoGet(_REMOTE, '/patients'))) |
|
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|
4759 self.assertEqual(2, len(DoGet(_REMOTE, '/studies'))) |
|
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diff
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|
4760 |
|
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test_bitbucket_issue_131
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diff
changeset
|
4761 a = DoPost(_REMOTE, '/modalities/self/query', { |
|
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diff
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|
4762 'Level' : 'Study', |
|
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test_bitbucket_issue_131
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diff
changeset
|
4763 'Query' : {"PatientID": "A" }})['ID'] |
|
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diff
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|
4764 |
|
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diff
changeset
|
4765 # 1 study is matched |
|
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diff
changeset
|
4766 self.assertEqual(1, len(DoGet(_REMOTE, '/queries/%s/answers' % a))) |
|
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test_bitbucket_issue_131
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|
4767 |
|
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diff
changeset
|
4768 self.assertEqual(0, len(DoGet(_LOCAL, '/instances'))) |
| 220 | 4769 WaitAllNewJobsDone(_REMOTE, lambda: DoPost |
| 4770 (_REMOTE, '/queries/%s/retrieve' % a, | |
| 4771 '{"TargetAet":"ORTHANCTEST","Synchronous":false}')) | |
|
219
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|
4772 |
|
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diff
changeset
|
4773 # The two studies are matched, as we made the request at the |
|
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|
4774 # Study level, thus the shared StudyInstanceUID is used as the key |
|
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|
4775 self.assertEqual(2, len(DoGet(_LOCAL, '/instances'))) |
|
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|
4776 |
|
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|
4777 |
|
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|
4778 # Match the 2 studies |
|
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|
4779 a = DoPost(_REMOTE, '/modalities/self/query', { |
|
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|
4780 'Level' : 'Study', |
|
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|
4781 'Query' : {"StudyInstanceUID": "2.25.123" }})['ID'] |
|
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|
4782 self.assertEqual(2, len(DoGet(_REMOTE, '/queries/%s/answers' % a))) |
|
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|
4783 DropOrthanc(_LOCAL) |
|
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|
4784 self.assertEqual(0, len(DoGet(_LOCAL, '/instances'))) |
| 220 | 4785 WaitAllNewJobsDone(_REMOTE, lambda: DoPost |
| 4786 (_REMOTE, '/queries/%s/retrieve' % a, | |
| 4787 '{"TargetAet":"ORTHANCTEST","Synchronous":false}')) | |
|
219
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|
4788 self.assertEqual(2, len(DoGet(_LOCAL, '/instances'))) |
|
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|
4789 |
|
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|
4790 |
|
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|
4791 # Same test, at the patient level => only 1 instance is transfered |
|
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|
4792 a = DoPost(_REMOTE, '/modalities/self/query', { |
|
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|
4793 'Level' : 'Patient', |
|
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|
4794 'Query' : {"PatientID": "A" }})['ID'] |
|
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|
4795 self.assertEqual(1, len(DoGet(_REMOTE, '/queries/%s/answers' % a))) |
|
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|
4796 DropOrthanc(_LOCAL) |
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4797 self.assertEqual(0, len(DoGet(_LOCAL, '/instances'))) |
| 220 | 4798 WaitAllNewJobsDone(_REMOTE, lambda: DoPost |
| 4799 (_REMOTE, '/queries/%s/retrieve' % a, | |
| 4800 '{"TargetAet":"ORTHANCTEST","Synchronous":false}')) | |
|
219
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|
4801 self.assertEqual(1, len(DoGet(_LOCAL, '/instances'))) |
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4802 |
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diff
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4803 |
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diff
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|
4804 # Same test, at the series level => only 1 instance is transfered |
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diff
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|
4805 a = DoPost(_REMOTE, '/modalities/self/query', { |
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diff
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4806 'Level' : 'Series', |
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4807 'Query' : {"PatientID": "A" }})['ID'] |
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|
4808 self.assertEqual(1, len(DoGet(_REMOTE, '/queries/%s/answers' % a))) |
|
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|
4809 DropOrthanc(_LOCAL) |
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diff
changeset
|
4810 self.assertEqual(0, len(DoGet(_LOCAL, '/instances'))) |
| 220 | 4811 WaitAllNewJobsDone(_REMOTE, lambda: DoPost |
| 4812 (_REMOTE, '/queries/%s/retrieve' % a, | |
| 4813 '{"TargetAet":"ORTHANCTEST","Synchronous":false}')) | |
|
219
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diff
changeset
|
4814 self.assertEqual(1, len(DoGet(_LOCAL, '/instances'))) |
|
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|
4815 |
|
233
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231
diff
changeset
|
4816 |
|
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diff
changeset
|
4817 def test_bitbucket_issue_136(self): |
|
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|
4818 UploadInstance(_REMOTE, 'Issue137.dcm') |
|
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diff
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|
4819 i = CallFindScu([ '-k', '0008,0052=STUDY', '-k', '0010,0010', '-k', '0028,0010', '-k', '0040,0275' ]) |
|
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diff
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|
4820 patientNames = re.findall('\(0010,0010\).*?\[(.*?)\]', i) |
|
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diff
changeset
|
4821 self.assertEqual(1, len(patientNames)) |
|
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diff
changeset
|
4822 self.assertEqual('John Doe', patientNames[0]) |
|
234
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diff
changeset
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4823 |
|
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diff
changeset
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4824 |
|
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test_anonymize_relationships_4
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diff
changeset
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4825 def test_anonymize_relationships_4(self): |
|
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test_anonymize_relationships_4
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diff
changeset
|
4826 # https://groups.google.com/d/msg/orthanc-users/UkcsqyTpszE/bXUpzU0vAAAJ |
|
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diff
changeset
|
4827 sr1 = UploadInstance(_REMOTE, 'HierarchicalAnonymization/2019-03-28/CR000000.dcm')['ID'] |
|
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diff
changeset
|
4828 mr1 = UploadInstance(_REMOTE, 'HierarchicalAnonymization/2019-03-28/PR000000.dcm')['ID'] |
|
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diff
changeset
|
4829 study = '0c923249-d52121a9-2b7167f7-6b85534f-0943697e' |
|
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test_anonymize_relationships_4
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diff
changeset
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4830 |
|
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test_anonymize_relationships_4
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diff
changeset
|
4831 anonymized = DoPost(_REMOTE, '/studies/%s/anonymize' % study, '{}', |
|
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diff
changeset
|
4832 'application/json')['ID'] |
|
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test_anonymize_relationships_4
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diff
changeset
|
4833 series = DoGet(_REMOTE, '/studies/%s/series' % anonymized) |
|
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diff
changeset
|
4834 self.assertEqual(2, len(series)) |
|
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diff
changeset
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4835 |
|
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diff
changeset
|
4836 cr = list(filter(lambda x: x['MainDicomTags']['Modality'] == 'CR', series)) |
|
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diff
changeset
|
4837 pr = list(filter(lambda x: x['MainDicomTags']['Modality'] == 'PR', series)) |
|
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diff
changeset
|
4838 self.assertEqual(1, len(cr)) |
|
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diff
changeset
|
4839 self.assertEqual(1, len(pr)) |
|
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diff
changeset
|
4840 self.assertEqual(1, len(cr[0]['Instances'])) |
|
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diff
changeset
|
4841 self.assertEqual(1, len(pr[0]['Instances'])) |
|
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diff
changeset
|
4842 |
|
93cd4fdd4a67
test_anonymize_relationships_4
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diff
changeset
|
4843 crinstance = DoGet(_REMOTE, '/instances/%s' % cr[0]['Instances'][0]) |
|
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test_anonymize_relationships_4
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233
diff
changeset
|
4844 tags = DoGet(_REMOTE, '/instances/%s/tags?short' % pr[0]['Instances'][0]) |
|
93cd4fdd4a67
test_anonymize_relationships_4
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233
diff
changeset
|
4845 |
|
93cd4fdd4a67
test_anonymize_relationships_4
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diff
changeset
|
4846 self.assertEqual(tags['0008,1115'][0]['0008,1140'][0]['0008,1155'], |
|
93cd4fdd4a67
test_anonymize_relationships_4
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233
diff
changeset
|
4847 crinstance['MainDicomTags']['SOPInstanceUID']) |
|
93cd4fdd4a67
test_anonymize_relationships_4
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parents:
233
diff
changeset
|
4848 self.assertEqual(tags['0008,1115'][0]['0008,1140'][0]['0008,1150'], |
|
93cd4fdd4a67
test_anonymize_relationships_4
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parents:
233
diff
changeset
|
4849 '1.2.840.10008.5.1.4.1.1.1') # SOP class for CR Image Storage |
|
93cd4fdd4a67
test_anonymize_relationships_4
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233
diff
changeset
|
4850 |
|
93cd4fdd4a67
test_anonymize_relationships_4
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parents:
233
diff
changeset
|
4851 # This fails on Orthanc <= 1.5.6 |
|
93cd4fdd4a67
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parents:
233
diff
changeset
|
4852 self.assertEqual(tags['0008,1115'][0]['0020,000e'], |
|
93cd4fdd4a67
test_anonymize_relationships_4
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parents:
233
diff
changeset
|
4853 cr[0]['MainDicomTags']['SeriesInstanceUID']) |
|
235
9929e4af2b7a
test_bitbucket_issue_140
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parents:
234
diff
changeset
|
4854 |
|
9929e4af2b7a
test_bitbucket_issue_140
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234
diff
changeset
|
4855 |
|
255
02c3d91b155c
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254
diff
changeset
|
4856 def test_anonymize_relationships_5(self): |
|
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amazy
parents:
254
diff
changeset
|
4857 ct1 = UploadInstance(_REMOTE, 'HierarchicalAnonymization/RTH/CT01.dcm') |
|
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amazy
parents:
254
diff
changeset
|
4858 rt1 = UploadInstance(_REMOTE, 'HierarchicalAnonymization/RTH/RT.dcm') |
|
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amazy
parents:
254
diff
changeset
|
4859 oStudyId = ct1['ParentStudy'] |
|
02c3d91b155c
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parents:
254
diff
changeset
|
4860 oCtInstanceId = ct1['ID'] |
|
02c3d91b155c
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amazy
parents:
254
diff
changeset
|
4861 oRtInstanceId = rt1['ID'] |
|
02c3d91b155c
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amazy
parents:
254
diff
changeset
|
4862 |
|
02c3d91b155c
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amazy
parents:
254
diff
changeset
|
4863 oCtTags = DoGet(_REMOTE, '/instances/%s/tags?simplify' % oCtInstanceId) |
|
02c3d91b155c
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amazy
parents:
254
diff
changeset
|
4864 oRtTags = DoGet(_REMOTE, '/instances/%s/tags?simplify' % oRtInstanceId) |
|
02c3d91b155c
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amazy
parents:
254
diff
changeset
|
4865 |
|
02c3d91b155c
added anonymization test for RTH data (currently failing)
amazy
parents:
254
diff
changeset
|
4866 # first validate the relationships in the source data |
|
02c3d91b155c
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amazy
parents:
254
diff
changeset
|
4867 oStudyUID = oCtTags['StudyInstanceUID'] |
|
02c3d91b155c
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amazy
parents:
254
diff
changeset
|
4868 oRtSeriesUID = oRtTags['SeriesInstanceUID'] |
|
02c3d91b155c
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parents:
254
diff
changeset
|
4869 oRtInstanceUID = oRtTags['SOPInstanceUID'] |
|
02c3d91b155c
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amazy
parents:
254
diff
changeset
|
4870 oRtFrameOfReferenceUID = oRtTags['ReferencedFrameOfReferenceSequence'][0]['FrameOfReferenceUID'] |
|
02c3d91b155c
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parents:
254
diff
changeset
|
4871 oCtSeriesUID = oCtTags['SeriesInstanceUID'] |
|
02c3d91b155c
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amazy
parents:
254
diff
changeset
|
4872 oCtInstanceUID = oCtTags['SOPInstanceUID'] |
|
02c3d91b155c
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parents:
254
diff
changeset
|
4873 oCtFrameOfReferenceUID = oCtTags['FrameOfReferenceUID'] |
|
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parents:
254
diff
changeset
|
4874 |
|
02c3d91b155c
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amazy
parents:
254
diff
changeset
|
4875 oContourSequenceCount = len(oRtTags['ROIContourSequence'][0]['ContourSequence']) |
|
02c3d91b155c
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amazy
parents:
254
diff
changeset
|
4876 self.assertEqual(oCtFrameOfReferenceUID, oRtFrameOfReferenceUID) |
|
02c3d91b155c
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parents:
254
diff
changeset
|
4877 self.assertEqual(oStudyUID, oRtTags['ReferencedFrameOfReferenceSequence'][0]['RTReferencedStudySequence'][0]['ReferencedSOPInstanceUID']) |
|
02c3d91b155c
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parents:
254
diff
changeset
|
4878 self.assertEqual(oCtSeriesUID, oRtTags['ReferencedFrameOfReferenceSequence'][0]['RTReferencedStudySequence'][0]['RTReferencedSeriesSequence'][0]['SeriesInstanceUID']) |
|
02c3d91b155c
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parents:
254
diff
changeset
|
4879 self.assertEqual(oCtInstanceUID, oRtTags['ReferencedFrameOfReferenceSequence'][0]['RTReferencedStudySequence'][0]['RTReferencedSeriesSequence'][0]['ContourImageSequence'][0]['ReferencedSOPInstanceUID']) |
|
02c3d91b155c
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parents:
254
diff
changeset
|
4880 self.assertEqual(oCtInstanceUID, oRtTags['ROIContourSequence'][0]['ContourSequence'][oContourSequenceCount-1]['ContourImageSequence'][0]['ReferencedSOPInstanceUID']) |
|
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diff
changeset
|
4881 |
|
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diff
changeset
|
4882 ### anonymize |
|
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254
diff
changeset
|
4883 |
|
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254
diff
changeset
|
4884 aStudyId = DoPost(_REMOTE, '/studies/%s/anonymize' % oStudyId, '{}', |
|
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254
diff
changeset
|
4885 'application/json')['ID'] |
|
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254
diff
changeset
|
4886 |
|
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diff
changeset
|
4887 ### validate |
|
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diff
changeset
|
4888 |
|
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diff
changeset
|
4889 aSeries = DoGet(_REMOTE, '/studies/%s/series' % aStudyId) |
|
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parents:
254
diff
changeset
|
4890 self.assertEqual(2, len(aSeries)) |
|
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254
diff
changeset
|
4891 |
|
02c3d91b155c
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254
diff
changeset
|
4892 aCt = list(filter(lambda x: x['MainDicomTags']['Modality'] == 'CT', aSeries)) |
|
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diff
changeset
|
4893 aRt = list(filter(lambda x: x['MainDicomTags']['Modality'] == 'RTSTRUCT', aSeries)) |
|
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diff
changeset
|
4894 aCtInstanceId = aCt[0]['Instances'][0] |
|
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diff
changeset
|
4895 aRtInstanceId = aRt[0]['Instances'][0] |
|
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diff
changeset
|
4896 aCtTags = DoGet(_REMOTE, '/instances/%s/tags?simplify' % aCtInstanceId) |
|
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diff
changeset
|
4897 aRtTags = DoGet(_REMOTE, '/instances/%s/tags?simplify' % aRtInstanceId) |
|
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diff
changeset
|
4898 |
|
02c3d91b155c
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254
diff
changeset
|
4899 # now validate the relationships in the anonymized data |
|
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diff
changeset
|
4900 aStudyUID = aCtTags['StudyInstanceUID'] |
|
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diff
changeset
|
4901 aRtSeriesUID = aRtTags['SeriesInstanceUID'] |
|
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diff
changeset
|
4902 aRtInstanceUID = aRtTags['SOPInstanceUID'] |
|
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diff
changeset
|
4903 aRtFrameOfReferenceUID = aRtTags['ReferencedFrameOfReferenceSequence'][0]['FrameOfReferenceUID'] |
|
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diff
changeset
|
4904 aCtSeriesUID = aCtTags['SeriesInstanceUID'] |
|
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diff
changeset
|
4905 aCtInstanceUID = aCtTags['SOPInstanceUID'] |
|
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diff
changeset
|
4906 aCtFrameOfReferenceUID = aCtTags['FrameOfReferenceUID'] |
|
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4907 |
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4908 aContourSequenceCount = len(aRtTags['ROIContourSequence'][0]['ContourSequence']) |
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4909 # make sure all UIDs have been updated |
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4910 self.assertNotEqual(oStudyUID, aStudyUID) |
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4911 self.assertNotEqual(oRtSeriesUID, aRtSeriesUID) |
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4912 self.assertNotEqual(oRtInstanceUID, aRtInstanceUID) |
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4913 self.assertNotEqual(oRtFrameOfReferenceUID, aRtFrameOfReferenceUID) |
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4914 self.assertNotEqual(oCtSeriesUID, aCtSeriesUID) |
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4915 self.assertNotEqual(oCtInstanceUID, aCtInstanceUID) |
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4916 self.assertNotEqual(oCtFrameOfReferenceUID, aCtFrameOfReferenceUID) |
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4917 |
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4918 # validate the relationships |
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4919 self.assertEqual(oContourSequenceCount, aContourSequenceCount) |
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4920 self.assertEqual(aCtFrameOfReferenceUID, aRtFrameOfReferenceUID) |
| 256 | 4921 self.assertEqual(aStudyUID, aRtTags['ReferencedFrameOfReferenceSequence'][0]['RTReferencedStudySequence'][0]['ReferencedSOPInstanceUID']) |
| 4922 self.assertEqual(aCtSeriesUID, aRtTags['ReferencedFrameOfReferenceSequence'][0]['RTReferencedStudySequence'][0]['RTReferencedSeriesSequence'][0]['SeriesInstanceUID']) | |
|
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4923 self.assertEqual(aCtInstanceUID, aRtTags['ReferencedFrameOfReferenceSequence'][0]['RTReferencedStudySequence'][0]['RTReferencedSeriesSequence'][0]['ContourImageSequence'][0]['ReferencedSOPInstanceUID']) |
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4924 self.assertEqual(aCtInstanceUID, aRtTags['ROIContourSequence'][0]['ContourSequence'][aContourSequenceCount-1]['ContourImageSequence'][0]['ReferencedSOPInstanceUID']) |
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4925 |
| 256 | 4926 def test_anonymize_relationships_5b(self): |
| 4927 # same test as previous one but, this time, we force the StudyInstanceUID | |
| 4928 ct1 = UploadInstance(_REMOTE, 'HierarchicalAnonymization/RTH/CT01.dcm') | |
| 4929 rt1 = UploadInstance(_REMOTE, 'HierarchicalAnonymization/RTH/RT.dcm') | |
| 4930 oStudyId = ct1['ParentStudy'] | |
| 4931 oCtInstanceId = ct1['ID'] | |
| 4932 oRtInstanceId = rt1['ID'] | |
| 4933 | |
| 4934 oCtTags = DoGet(_REMOTE, '/instances/%s/tags?simplify' % oCtInstanceId) | |
| 4935 oRtTags = DoGet(_REMOTE, '/instances/%s/tags?simplify' % oRtInstanceId) | |
| 4936 | |
| 4937 ### anonymize while forcing the StudyInstanceUID | |
| 4938 | |
| 4939 aStudyId = DoPost(_REMOTE, '/studies/%s/anonymize' % oStudyId, '{ "Replace" : { "StudyInstanceUID" : "1.2.3.4"}, "Force": true}', | |
| 4940 'application/json')['ID'] | |
| 4941 | |
| 4942 ### validate | |
| 4943 | |
| 4944 aSeries = DoGet(_REMOTE, '/studies/%s/series' % aStudyId) | |
| 4945 self.assertEqual(2, len(aSeries)) | |
| 4946 | |
| 4947 aCt = list(filter(lambda x: x['MainDicomTags']['Modality'] == 'CT', aSeries)) | |
| 4948 aRt = list(filter(lambda x: x['MainDicomTags']['Modality'] == 'RTSTRUCT', aSeries)) | |
| 4949 aCtInstanceId = aCt[0]['Instances'][0] | |
| 4950 aRtInstanceId = aRt[0]['Instances'][0] | |
| 4951 aCtTags = DoGet(_REMOTE, '/instances/%s/tags?simplify' % aCtInstanceId) | |
| 4952 aRtTags = DoGet(_REMOTE, '/instances/%s/tags?simplify' % aRtInstanceId) | |
| 4953 | |
| 4954 self.assertEqual("1.2.3.4", aCtTags['StudyInstanceUID']) | |
| 4955 self.assertEqual("1.2.3.4", aRtTags['StudyInstanceUID']) | |
| 4956 self.assertEqual("1.2.3.4", aRtTags['ReferencedFrameOfReferenceSequence'][0]['RTReferencedStudySequence'][0]['ReferencedSOPInstanceUID']) | |
|
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4957 |
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4958 |
|
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4959 def test_bitbucket_issue_140(self): |
| 266 | 4960 # "Modifying private tags with REST API changes VR from LO to |
| 267 | 4961 # UN." This test fails if DCMTK <= 3.6.1 (e.g. fails on Ubuntu 16.04). |
| 319 | 4962 # https://bugs.orthanc-server.com/show_bug.cgi?id=140 |
|
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4963 source = UploadInstance(_REMOTE, 'Issue140.dcm') ['ID'] |
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4964 series = DoGet(_REMOTE, '/instances/%s' % source) ['ParentSeries'] |
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4965 |
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4966 target = DoPost(_REMOTE, '/series/%s/modify' % series, { |
| 266 | 4967 'Replace' : { 'RadioButton3' : 'aaabbbccc' }, |
| 4968 'PrivateCreator' : 'RadioLogic', # <= the trick is here | |
|
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4969 }, 'application/json') ['ID'] |
|
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4970 |
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4971 instances = DoGet(_REMOTE, '/series/%s/instances' % target) |
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4972 self.assertEqual(1, len(instances)) |
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4973 |
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4974 tags = DoGet(_REMOTE, '/instances/%s/tags' % source) |
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4975 t = tags['4321,1012'] |
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4976 self.assertEqual('String', t['Type']) |
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4977 self.assertEqual('RadioButton3', t['Name']) |
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4978 self.assertEqual('RadioLogic', t['PrivateCreator']) |
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4979 self.assertEqual('jklmopq', t['Value']) |
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4980 |
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4981 tags = DoGet(_REMOTE, '/instances/%s/tags' % instances[0]['ID']) |
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|
4982 t = tags['4321,1012'] |
| 327 | 4983 self.assertEqual('String', t['Type']) # This fails if DCMTK <= 3.6.1 |
|
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4984 self.assertEqual('RadioButton3', t['Name']) |
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|
4985 self.assertEqual('RadioLogic', t['PrivateCreator']) |
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4986 self.assertEqual('aaabbbccc', t['Value']) |
|
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4987 |
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4988 |
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|
4989 def test_find_normalize(self): |
|
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4990 # https://groups.google.com/d/msg/orthanc-users/AIwooGjsh94/YL28MNY4AgAJ |
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4991 |
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|
4992 UploadInstance(_REMOTE, 'Knee/T1/IM-0001-0001.dcm') |
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4993 |
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4994 a = DoPost(_REMOTE, '/modalities/self/query', { |
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4995 'Level' : 'Instance', |
|
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4996 'Query' : { 'Rows' : '42' } |
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4997 }) ['ID'] |
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4998 |
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|
4999 b = DoGet(_REMOTE, '/queries/%s/answers?expand&simplify' % a) |
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5000 self.assertEqual(1, len(b)) |
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5001 self.assertFalse('Rows' in b[0]) |
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5002 |
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5003 a = DoPost(_REMOTE, '/modalities/self/query', { |
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5004 'Level' : 'Instance', |
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5005 'Query' : { 'Rows' : '42' }, |
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5006 'Normalize' : False |
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5007 }) ['ID'] |
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5008 |
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|
5009 b = DoGet(_REMOTE, '/queries/%s/answers' % a) |
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|
5010 self.assertEqual(0, len(b)) |
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|
5011 |
|
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|
5012 a = DoPost(_REMOTE, '/modalities/self/query', { |
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5013 'Level' : 'Instance', |
|
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5014 'Query' : { 'Rows' : '512' }, |
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5015 'Normalize' : False |
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5016 }) ['ID'] |
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5017 |
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|
5018 b = DoGet(_REMOTE, '/queries/%s/answers?expand&simplify' % a) |
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5019 self.assertEqual(1, len(b)) |
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5020 self.assertTrue('Rows' in b[0]) |
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5021 self.assertEqual('512', b[0]['Rows']) |
| 237 | 5022 |
| 5023 a = DoPost(_REMOTE, '/modalities/self/query', { | |
| 5024 'Level' : 'Instance', | |
| 5025 'Query' : { 'Rows' : '' }, | |
| 5026 'Normalize' : False | |
| 5027 }) ['ID'] | |
| 5028 | |
| 5029 b = DoGet(_REMOTE, '/queries/%s/answers?expand&simplify' % a) | |
| 5030 self.assertEqual(1, len(b)) | |
| 5031 self.assertTrue('Rows' in b[0]) | |
| 5032 self.assertEqual('512', b[0]['Rows']) | |
| 5033 | |
| 5034 self.assertRaises(Exception, lambda: DoPost( | |
| 5035 _REMOTE, '/modalities/self/query', { | |
| 5036 'Level' : 'Instance', | |
| 5037 'Query' : { 'Rows' : '*' }, # Out-of-range value | |
| 5038 'Normalize' : False | |
| 5039 })) | |
|
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5040 |
|
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5041 |
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|
5042 def test_bitbucket_issue_141(self): |
| 319 | 5043 # https://bugs.orthanc-server.com/show_bug.cgi?id=141 |
|
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5044 a = UploadInstance(_REMOTE, 'Issue141.dcm') ['ID'] |
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5045 study = '494c8037-b237f263-d8f15075-c8cb2280-daf39bd1' |
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5046 |
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|
5047 with open(GetDatabasePath('HelloWorld.pdf'), 'rb') as f: |
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5048 pdf = f.read() |
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5049 |
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5050 b = DoPost(_REMOTE, '/tools/create-dicom', { |
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5051 'Parent' : study, |
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5052 'Tags' : {}, |
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5053 'Content' : 'data:application/pdf;base64,' + base64.b64encode(pdf) |
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5054 }) ['ID'] |
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5055 |
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changeset
|
5056 tagsA = DoGet(_REMOTE, '/instances/%s/tags?short' % a) |
|
cccf697a4e13
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Sebastien Jodogne <s.jodogne@gmail.com>
parents:
237
diff
changeset
|
5057 tagsB = DoGet(_REMOTE, '/instances/%s/tags?short' % b) |
|
cccf697a4e13
test_bitbucket_issue_141
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
237
diff
changeset
|
5058 self.assertEqual(tagsA['0008,0005'], tagsB['0008,0005']) |
|
cccf697a4e13
test_bitbucket_issue_141
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
237
diff
changeset
|
5059 self.assertEqual(tagsA['0008,1030'], tagsB['0008,1030']) |
|
247
1abdab0ba0e6
test_modifying_missing_patientid
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
243
diff
changeset
|
5060 |
|
1abdab0ba0e6
test_modifying_missing_patientid
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
243
diff
changeset
|
5061 |
|
1abdab0ba0e6
test_modifying_missing_patientid
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
243
diff
changeset
|
5062 def test_modifying_missing_patientid(self): |
|
1abdab0ba0e6
test_modifying_missing_patientid
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
243
diff
changeset
|
5063 # https://groups.google.com/d/msg/orthanc-users/aphG_h1AHVg/rfOTtTPTAgAJ |
|
1abdab0ba0e6
test_modifying_missing_patientid
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
243
diff
changeset
|
5064 UploadInstance(_REMOTE, '2019-06-17-VedranZdesic.dcm') |
|
1abdab0ba0e6
test_modifying_missing_patientid
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
243
diff
changeset
|
5065 DoPost(_REMOTE, '/studies/0c4aca1d-c107a241-6659d6aa-594c674a-a468b94a/modify', {}) |
| 262 | 5066 |
| 5067 | |
| 5068 def test_log_level(self): | |
| 319 | 5069 # https://bugs.orthanc-server.com/show_bug.cgi?id=65 |
| 262 | 5070 original = DoGet(_REMOTE, '/tools/log-level') |
| 5071 | |
| 5072 DoPut(_REMOTE, '/tools/log-level', 'default') | |
| 5073 self.assertEqual('default', DoGet(_REMOTE, '/tools/log-level')) | |
| 5074 DoGet(_REMOTE, '/system') | |
| 5075 | |
| 5076 DoPut(_REMOTE, '/tools/log-level', 'verbose') | |
| 5077 self.assertEqual('verbose', DoGet(_REMOTE, '/tools/log-level')) | |
| 5078 DoGet(_REMOTE, '/system') | |
| 5079 | |
| 5080 DoPut(_REMOTE, '/tools/log-level', 'trace') | |
| 5081 self.assertEqual('trace', DoGet(_REMOTE, '/tools/log-level')) | |
| 5082 DoGet(_REMOTE, '/system') | |
| 5083 | |
| 5084 self.assertRaises(Exception, lambda: DoPut(_REMOTE, '/tools/log-level', 'nope')) | |
| 5085 | |
| 5086 # Switch back to the original log level | |
| 5087 DoPut(_REMOTE, '/tools/log-level', original) | |
|
264
445f498bc1d4
test_upload_compressed
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
263
diff
changeset
|
5088 |
|
445f498bc1d4
test_upload_compressed
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
263
diff
changeset
|
5089 |
|
445f498bc1d4
test_upload_compressed
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
263
diff
changeset
|
5090 def test_upload_compressed(self): |
| 265 | 5091 # New in Orthanc 1.6.0 |
|
264
445f498bc1d4
test_upload_compressed
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
263
diff
changeset
|
5092 with open(GetDatabasePath('DummyCT.dcm.gz'), 'rb') as f: |
|
445f498bc1d4
test_upload_compressed
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
263
diff
changeset
|
5093 d = f.read() |
|
445f498bc1d4
test_upload_compressed
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
263
diff
changeset
|
5094 |
|
445f498bc1d4
test_upload_compressed
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
263
diff
changeset
|
5095 self.assertRaises(Exception, lambda: DoPost(_REMOTE, '/instances', d, 'application/dicom')) |
|
445f498bc1d4
test_upload_compressed
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
263
diff
changeset
|
5096 |
|
445f498bc1d4
test_upload_compressed
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
263
diff
changeset
|
5097 self.assertRaises(Exception, lambda: DoPost(_REMOTE, '/instances', d, 'application/dicom', |
|
445f498bc1d4
test_upload_compressed
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
263
diff
changeset
|
5098 headers = { 'Content-Encoding' : 'nope' })) |
|
445f498bc1d4
test_upload_compressed
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
263
diff
changeset
|
5099 |
|
445f498bc1d4
test_upload_compressed
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
263
diff
changeset
|
5100 a = DoPost(_REMOTE, '/instances', d, 'application/dicom', |
|
445f498bc1d4
test_upload_compressed
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
263
diff
changeset
|
5101 headers = { 'Content-Encoding' : 'gzip' }) |
|
445f498bc1d4
test_upload_compressed
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
263
diff
changeset
|
5102 self.assertEqual('66a662ce-7430e543-bad44d47-0dc5a943-ec7a538d', a['ID']) |
| 262 | 5103 |
| 5104 | |
|
263
a2719263fd04
test_study_series_find_inconsistency
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
262
diff
changeset
|
5105 def test_study_series_find_inconsistency(self): |
|
a2719263fd04
test_study_series_find_inconsistency
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
262
diff
changeset
|
5106 # https://groups.google.com/forum/#!topic/orthanc-users/bLv6Z11COy0 |
|
a2719263fd04
test_study_series_find_inconsistency
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
262
diff
changeset
|
5107 |
|
a2719263fd04
test_study_series_find_inconsistency
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
262
diff
changeset
|
5108 def CountAnswers(query): |
|
a2719263fd04
test_study_series_find_inconsistency
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
262
diff
changeset
|
5109 a = DoPost(_REMOTE, 'modalities/self/query', query) |
|
a2719263fd04
test_study_series_find_inconsistency
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
262
diff
changeset
|
5110 return len(DoGet(_REMOTE, '%s/answers' % a['Path'])) |
|
a2719263fd04
test_study_series_find_inconsistency
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
262
diff
changeset
|
5111 |
|
a2719263fd04
test_study_series_find_inconsistency
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
262
diff
changeset
|
5112 # This instance has "SeriesDescription" (0008,103e) tag, but no |
|
a2719263fd04
test_study_series_find_inconsistency
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
262
diff
changeset
|
5113 # "ProtocolName" (0018,1030). Both of those tags are part of |
|
a2719263fd04
test_study_series_find_inconsistency
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
262
diff
changeset
|
5114 # the "main DICOM tags" of Orthanc. |
|
a2719263fd04
test_study_series_find_inconsistency
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
262
diff
changeset
|
5115 UploadInstance(_REMOTE, 'Issue137.dcm') |
|
a2719263fd04
test_study_series_find_inconsistency
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
262
diff
changeset
|
5116 |
|
a2719263fd04
test_study_series_find_inconsistency
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
262
diff
changeset
|
5117 |
|
a2719263fd04
test_study_series_find_inconsistency
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
262
diff
changeset
|
5118 self.assertEqual(1, CountAnswers({ |
|
a2719263fd04
test_study_series_find_inconsistency
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
262
diff
changeset
|
5119 'Level' : 'Study', |
|
a2719263fd04
test_study_series_find_inconsistency
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
262
diff
changeset
|
5120 })) |
|
a2719263fd04
test_study_series_find_inconsistency
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
262
diff
changeset
|
5121 |
|
a2719263fd04
test_study_series_find_inconsistency
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
262
diff
changeset
|
5122 self.assertEqual(1, CountAnswers({ |
|
a2719263fd04
test_study_series_find_inconsistency
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
262
diff
changeset
|
5123 'Level' : 'Series', |
|
a2719263fd04
test_study_series_find_inconsistency
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
262
diff
changeset
|
5124 })) |
|
a2719263fd04
test_study_series_find_inconsistency
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
262
diff
changeset
|
5125 |
|
a2719263fd04
test_study_series_find_inconsistency
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
262
diff
changeset
|
5126 |
|
a2719263fd04
test_study_series_find_inconsistency
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
262
diff
changeset
|
5127 ## |
|
a2719263fd04
test_study_series_find_inconsistency
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
262
diff
changeset
|
5128 ## "SeriesDescription" is present, and has VR "CS" => wildcard is allowed |
|
a2719263fd04
test_study_series_find_inconsistency
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
262
diff
changeset
|
5129 ## http://dicom.nema.org/medical/dicom/2019e/output/chtml/part04/sect_C.2.2.2.4.html |
|
a2719263fd04
test_study_series_find_inconsistency
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
262
diff
changeset
|
5130 ## |
|
a2719263fd04
test_study_series_find_inconsistency
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
262
diff
changeset
|
5131 |
|
a2719263fd04
test_study_series_find_inconsistency
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
262
diff
changeset
|
5132 # At the study level, the "SeriesDescription" tag is not allowed, but |
|
a2719263fd04
test_study_series_find_inconsistency
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
262
diff
changeset
|
5133 # is wiped out by the normalization |
|
a2719263fd04
test_study_series_find_inconsistency
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
262
diff
changeset
|
5134 self.assertEqual(0, CountAnswers({ |
|
a2719263fd04
test_study_series_find_inconsistency
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
262
diff
changeset
|
5135 'Level' : 'Study', |
|
a2719263fd04
test_study_series_find_inconsistency
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
262
diff
changeset
|
5136 'Query' : { |
|
a2719263fd04
test_study_series_find_inconsistency
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
262
diff
changeset
|
5137 'SeriesDescription' : 'NOPE' |
|
a2719263fd04
test_study_series_find_inconsistency
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
262
diff
changeset
|
5138 }, |
|
a2719263fd04
test_study_series_find_inconsistency
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
262
diff
changeset
|
5139 'Normalize' : False |
|
a2719263fd04
test_study_series_find_inconsistency
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
262
diff
changeset
|
5140 })) |
|
a2719263fd04
test_study_series_find_inconsistency
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
262
diff
changeset
|
5141 self.assertEqual(0, CountAnswers({ |
|
a2719263fd04
test_study_series_find_inconsistency
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
262
diff
changeset
|
5142 # This test fails on Orthanc <= 1.5.8 |
|
a2719263fd04
test_study_series_find_inconsistency
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
262
diff
changeset
|
5143 'Level' : 'Study', |
|
a2719263fd04
test_study_series_find_inconsistency
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
262
diff
changeset
|
5144 'Query' : { |
|
a2719263fd04
test_study_series_find_inconsistency
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
262
diff
changeset
|
5145 'SeriesDescription' : '*' # Wildcard matching => no match, as the tag is absent |
|
a2719263fd04
test_study_series_find_inconsistency
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
262
diff
changeset
|
5146 }, |
|
a2719263fd04
test_study_series_find_inconsistency
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
262
diff
changeset
|
5147 'Normalize' : False |
|
a2719263fd04
test_study_series_find_inconsistency
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
262
diff
changeset
|
5148 })) |
|
a2719263fd04
test_study_series_find_inconsistency
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
262
diff
changeset
|
5149 self.assertEqual(1, CountAnswers({ |
|
a2719263fd04
test_study_series_find_inconsistency
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
262
diff
changeset
|
5150 'Level' : 'Study', |
|
a2719263fd04
test_study_series_find_inconsistency
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
262
diff
changeset
|
5151 'Query' : { |
|
a2719263fd04
test_study_series_find_inconsistency
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
262
diff
changeset
|
5152 'SeriesDescription' : 'THIS^VALUE^IS^WIPED^OUT' |
|
a2719263fd04
test_study_series_find_inconsistency
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
262
diff
changeset
|
5153 }, |
|
a2719263fd04
test_study_series_find_inconsistency
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
262
diff
changeset
|
5154 'Normalize' : True |
|
a2719263fd04
test_study_series_find_inconsistency
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
262
diff
changeset
|
5155 })) |
|
a2719263fd04
test_study_series_find_inconsistency
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
262
diff
changeset
|
5156 self.assertEqual(1, CountAnswers({ |
|
a2719263fd04
test_study_series_find_inconsistency
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
262
diff
changeset
|
5157 'Level' : 'Study', |
|
a2719263fd04
test_study_series_find_inconsistency
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
262
diff
changeset
|
5158 'Query' : { |
|
a2719263fd04
test_study_series_find_inconsistency
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
262
diff
changeset
|
5159 'SeriesDescription' : '*' # Matches, as wiped out by the normalization |
|
a2719263fd04
test_study_series_find_inconsistency
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
262
diff
changeset
|
5160 }, |
|
a2719263fd04
test_study_series_find_inconsistency
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
262
diff
changeset
|
5161 'Normalize' : True |
|
a2719263fd04
test_study_series_find_inconsistency
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
262
diff
changeset
|
5162 })) |
|
a2719263fd04
test_study_series_find_inconsistency
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
262
diff
changeset
|
5163 |
|
a2719263fd04
test_study_series_find_inconsistency
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
262
diff
changeset
|
5164 for normalize in [ True, False ]: |
|
a2719263fd04
test_study_series_find_inconsistency
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
262
diff
changeset
|
5165 # At the series level, the "SeriesDescription" tag is allowed, and |
|
a2719263fd04
test_study_series_find_inconsistency
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
262
diff
changeset
|
5166 # normalization has no effect |
|
a2719263fd04
test_study_series_find_inconsistency
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
262
diff
changeset
|
5167 |
|
a2719263fd04
test_study_series_find_inconsistency
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
262
diff
changeset
|
5168 # "Universal matching" will match all entities, including |
|
a2719263fd04
test_study_series_find_inconsistency
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
262
diff
changeset
|
5169 # those with the missing tag |
|
a2719263fd04
test_study_series_find_inconsistency
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
262
diff
changeset
|
5170 # http://dicom.nema.org/medical/dicom/2019e/output/chtml/part04/sect_C.2.2.2.3.html |
|
a2719263fd04
test_study_series_find_inconsistency
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
262
diff
changeset
|
5171 self.assertEqual(1, CountAnswers({ |
|
a2719263fd04
test_study_series_find_inconsistency
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
262
diff
changeset
|
5172 'Level' : 'Series', |
|
a2719263fd04
test_study_series_find_inconsistency
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
262
diff
changeset
|
5173 'Query' : { |
|
a2719263fd04
test_study_series_find_inconsistency
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
262
diff
changeset
|
5174 'SeriesDescription' : '' # Universal matching |
|
a2719263fd04
test_study_series_find_inconsistency
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
262
diff
changeset
|
5175 }, |
|
a2719263fd04
test_study_series_find_inconsistency
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
262
diff
changeset
|
5176 'Normalize' : normalize, |
|
a2719263fd04
test_study_series_find_inconsistency
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
262
diff
changeset
|
5177 })) |
|
a2719263fd04
test_study_series_find_inconsistency
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
262
diff
changeset
|
5178 # "Universal matching" will match all entities, including |
|
a2719263fd04
test_study_series_find_inconsistency
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
262
diff
changeset
|
5179 # those with the missing tag |
|
a2719263fd04
test_study_series_find_inconsistency
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
262
diff
changeset
|
5180 # http://dicom.nema.org/medical/dicom/2019e/output/chtml/part04/sect_C.2.2.2.3.html |
|
a2719263fd04
test_study_series_find_inconsistency
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
262
diff
changeset
|
5181 self.assertEqual(1, CountAnswers({ |
|
a2719263fd04
test_study_series_find_inconsistency
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
262
diff
changeset
|
5182 'Level' : 'Series', |
|
a2719263fd04
test_study_series_find_inconsistency
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
262
diff
changeset
|
5183 'Query' : { |
|
a2719263fd04
test_study_series_find_inconsistency
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
262
diff
changeset
|
5184 'SeriesDescription' : '*' # Wildcard matching |
|
a2719263fd04
test_study_series_find_inconsistency
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
262
diff
changeset
|
5185 }, |
|
a2719263fd04
test_study_series_find_inconsistency
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
262
diff
changeset
|
5186 'Normalize' : normalize, |
|
a2719263fd04
test_study_series_find_inconsistency
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
262
diff
changeset
|
5187 })) |
|
a2719263fd04
test_study_series_find_inconsistency
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
262
diff
changeset
|
5188 self.assertEqual(1, CountAnswers({ |
|
a2719263fd04
test_study_series_find_inconsistency
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
262
diff
changeset
|
5189 'Level' : 'Series', |
|
a2719263fd04
test_study_series_find_inconsistency
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
262
diff
changeset
|
5190 'Query' : { |
|
a2719263fd04
test_study_series_find_inconsistency
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
262
diff
changeset
|
5191 'SeriesDescription' : '*model*' # The actual value is "STL model: intraop Report" |
|
a2719263fd04
test_study_series_find_inconsistency
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
262
diff
changeset
|
5192 }, |
|
a2719263fd04
test_study_series_find_inconsistency
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
262
diff
changeset
|
5193 'Normalize' : normalize, |
|
a2719263fd04
test_study_series_find_inconsistency
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
262
diff
changeset
|
5194 })) |
|
a2719263fd04
test_study_series_find_inconsistency
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
262
diff
changeset
|
5195 self.assertEqual(0, CountAnswers({ |
|
a2719263fd04
test_study_series_find_inconsistency
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
262
diff
changeset
|
5196 'Level' : 'Series', |
|
a2719263fd04
test_study_series_find_inconsistency
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
262
diff
changeset
|
5197 'Query' : { |
|
a2719263fd04
test_study_series_find_inconsistency
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
262
diff
changeset
|
5198 'SeriesDescription' : '*MISMATCHED^VALUE*' |
|
a2719263fd04
test_study_series_find_inconsistency
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
262
diff
changeset
|
5199 }, |
|
a2719263fd04
test_study_series_find_inconsistency
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
262
diff
changeset
|
5200 'Normalize' : normalize, |
|
a2719263fd04
test_study_series_find_inconsistency
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
262
diff
changeset
|
5201 })) |
|
a2719263fd04
test_study_series_find_inconsistency
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
262
diff
changeset
|
5202 |
|
a2719263fd04
test_study_series_find_inconsistency
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
262
diff
changeset
|
5203 # Universal matching matches any instance, even if the |
|
a2719263fd04
test_study_series_find_inconsistency
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
262
diff
changeset
|
5204 # query is at the study-level, and thus if "SeriesDescription" |
|
a2719263fd04
test_study_series_find_inconsistency
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
262
diff
changeset
|
5205 # makes no sense |
|
a2719263fd04
test_study_series_find_inconsistency
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
262
diff
changeset
|
5206 self.assertEqual(1, CountAnswers({ |
|
a2719263fd04
test_study_series_find_inconsistency
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
262
diff
changeset
|
5207 'Level' : 'Study', |
|
a2719263fd04
test_study_series_find_inconsistency
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
262
diff
changeset
|
5208 'Query' : { |
|
a2719263fd04
test_study_series_find_inconsistency
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
262
diff
changeset
|
5209 'SeriesDescription' : '' # Universal matching |
|
a2719263fd04
test_study_series_find_inconsistency
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
262
diff
changeset
|
5210 }, |
|
a2719263fd04
test_study_series_find_inconsistency
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
262
diff
changeset
|
5211 'Normalize' : normalize, |
|
a2719263fd04
test_study_series_find_inconsistency
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
262
diff
changeset
|
5212 })) |
|
a2719263fd04
test_study_series_find_inconsistency
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
262
diff
changeset
|
5213 |
|
a2719263fd04
test_study_series_find_inconsistency
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
262
diff
changeset
|
5214 |
|
a2719263fd04
test_study_series_find_inconsistency
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
262
diff
changeset
|
5215 |
|
a2719263fd04
test_study_series_find_inconsistency
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
262
diff
changeset
|
5216 ## |
|
a2719263fd04
test_study_series_find_inconsistency
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
262
diff
changeset
|
5217 ## "ProtocolName" is absent, and has VR "CS" => wildcard is allowed |
|
a2719263fd04
test_study_series_find_inconsistency
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
262
diff
changeset
|
5218 ## |
|
a2719263fd04
test_study_series_find_inconsistency
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
262
diff
changeset
|
5219 |
|
a2719263fd04
test_study_series_find_inconsistency
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
262
diff
changeset
|
5220 # At the study level, the "ProtocolName" tag is not allowed, but |
|
a2719263fd04
test_study_series_find_inconsistency
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
262
diff
changeset
|
5221 # is wiped out by the normalization |
|
a2719263fd04
test_study_series_find_inconsistency
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
262
diff
changeset
|
5222 self.assertEqual(0, CountAnswers({ |
|
a2719263fd04
test_study_series_find_inconsistency
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
262
diff
changeset
|
5223 'Level' : 'Study', |
|
a2719263fd04
test_study_series_find_inconsistency
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
262
diff
changeset
|
5224 'Query' : { |
|
a2719263fd04
test_study_series_find_inconsistency
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
262
diff
changeset
|
5225 'ProtocolName' : 'NOPE' |
|
a2719263fd04
test_study_series_find_inconsistency
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
262
diff
changeset
|
5226 }, |
|
a2719263fd04
test_study_series_find_inconsistency
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
262
diff
changeset
|
5227 'Normalize' : False |
|
a2719263fd04
test_study_series_find_inconsistency
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
262
diff
changeset
|
5228 })) |
|
a2719263fd04
test_study_series_find_inconsistency
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
262
diff
changeset
|
5229 self.assertEqual(0, CountAnswers({ |
|
a2719263fd04
test_study_series_find_inconsistency
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
262
diff
changeset
|
5230 'Level' : 'Study', |
|
a2719263fd04
test_study_series_find_inconsistency
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
262
diff
changeset
|
5231 'Query' : { |
|
a2719263fd04
test_study_series_find_inconsistency
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
262
diff
changeset
|
5232 'ProtocolName' : '*' # Wildcard matching => no match, as the tag is absent |
|
a2719263fd04
test_study_series_find_inconsistency
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
262
diff
changeset
|
5233 }, |
|
a2719263fd04
test_study_series_find_inconsistency
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
262
diff
changeset
|
5234 'Normalize' : False |
|
a2719263fd04
test_study_series_find_inconsistency
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
262
diff
changeset
|
5235 })) |
|
a2719263fd04
test_study_series_find_inconsistency
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
262
diff
changeset
|
5236 self.assertEqual(1, CountAnswers({ |
|
a2719263fd04
test_study_series_find_inconsistency
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
262
diff
changeset
|
5237 'Level' : 'Study', |
|
a2719263fd04
test_study_series_find_inconsistency
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
262
diff
changeset
|
5238 'Query' : { |
|
a2719263fd04
test_study_series_find_inconsistency
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
262
diff
changeset
|
5239 'ProtocolName' : 'THIS^VALUE^IS^WIPED^OUT' |
|
a2719263fd04
test_study_series_find_inconsistency
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
262
diff
changeset
|
5240 }, |
|
a2719263fd04
test_study_series_find_inconsistency
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
262
diff
changeset
|
5241 'Normalize' : True |
|
a2719263fd04
test_study_series_find_inconsistency
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
262
diff
changeset
|
5242 })) |
|
a2719263fd04
test_study_series_find_inconsistency
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
262
diff
changeset
|
5243 self.assertEqual(1, CountAnswers({ |
|
a2719263fd04
test_study_series_find_inconsistency
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
262
diff
changeset
|
5244 'Level' : 'Study', |
|
a2719263fd04
test_study_series_find_inconsistency
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
262
diff
changeset
|
5245 'Query' : { |
|
a2719263fd04
test_study_series_find_inconsistency
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
262
diff
changeset
|
5246 'ProtocolName' : '*' # Matches, as wiped out by the normalization |
|
a2719263fd04
test_study_series_find_inconsistency
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
262
diff
changeset
|
5247 }, |
|
a2719263fd04
test_study_series_find_inconsistency
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
262
diff
changeset
|
5248 'Normalize' : True |
|
a2719263fd04
test_study_series_find_inconsistency
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
262
diff
changeset
|
5249 })) |
|
a2719263fd04
test_study_series_find_inconsistency
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
262
diff
changeset
|
5250 |
|
a2719263fd04
test_study_series_find_inconsistency
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
262
diff
changeset
|
5251 for normalize in [ True, False ]: |
|
a2719263fd04
test_study_series_find_inconsistency
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
262
diff
changeset
|
5252 # At the series level, the "ProtocolName" tag is allowed, and |
|
a2719263fd04
test_study_series_find_inconsistency
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
262
diff
changeset
|
5253 # normalization has no effect |
|
a2719263fd04
test_study_series_find_inconsistency
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
262
diff
changeset
|
5254 |
|
a2719263fd04
test_study_series_find_inconsistency
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
262
diff
changeset
|
5255 self.assertEqual(1, CountAnswers({ |
|
a2719263fd04
test_study_series_find_inconsistency
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
262
diff
changeset
|
5256 'Level' : 'Series', |
|
a2719263fd04
test_study_series_find_inconsistency
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
262
diff
changeset
|
5257 'Query' : { |
|
a2719263fd04
test_study_series_find_inconsistency
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
262
diff
changeset
|
5258 'ProtocolName' : '' # Universal matching |
|
a2719263fd04
test_study_series_find_inconsistency
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
262
diff
changeset
|
5259 }, |
|
a2719263fd04
test_study_series_find_inconsistency
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
262
diff
changeset
|
5260 'Normalize' : normalize, |
|
a2719263fd04
test_study_series_find_inconsistency
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
262
diff
changeset
|
5261 })) |
|
a2719263fd04
test_study_series_find_inconsistency
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
262
diff
changeset
|
5262 self.assertEqual(0, CountAnswers({ |
|
a2719263fd04
test_study_series_find_inconsistency
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
262
diff
changeset
|
5263 'Level' : 'Series', |
|
a2719263fd04
test_study_series_find_inconsistency
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
262
diff
changeset
|
5264 'Query' : { |
|
a2719263fd04
test_study_series_find_inconsistency
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
262
diff
changeset
|
5265 'ProtocolName' : '*' # Wildcard matching => no match, as the tag is absent |
|
a2719263fd04
test_study_series_find_inconsistency
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
262
diff
changeset
|
5266 }, |
|
a2719263fd04
test_study_series_find_inconsistency
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
262
diff
changeset
|
5267 'Normalize' : normalize, |
|
a2719263fd04
test_study_series_find_inconsistency
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
262
diff
changeset
|
5268 })) |
|
a2719263fd04
test_study_series_find_inconsistency
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
262
diff
changeset
|
5269 self.assertEqual(0, CountAnswers({ |
|
a2719263fd04
test_study_series_find_inconsistency
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
262
diff
changeset
|
5270 'Level' : 'Series', |
|
a2719263fd04
test_study_series_find_inconsistency
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
262
diff
changeset
|
5271 'Query' : { |
|
a2719263fd04
test_study_series_find_inconsistency
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
262
diff
changeset
|
5272 'ProtocolName' : '*MISMATCHED^VALUE*' |
|
a2719263fd04
test_study_series_find_inconsistency
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
262
diff
changeset
|
5273 }, |
|
a2719263fd04
test_study_series_find_inconsistency
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
262
diff
changeset
|
5274 'Normalize' : normalize, |
|
a2719263fd04
test_study_series_find_inconsistency
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
262
diff
changeset
|
5275 })) |
|
a2719263fd04
test_study_series_find_inconsistency
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
262
diff
changeset
|
5276 |
|
a2719263fd04
test_study_series_find_inconsistency
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
262
diff
changeset
|
5277 self.assertEqual(1, CountAnswers({ |
|
a2719263fd04
test_study_series_find_inconsistency
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
262
diff
changeset
|
5278 'Level' : 'Study', |
|
a2719263fd04
test_study_series_find_inconsistency
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
262
diff
changeset
|
5279 'Query' : { |
|
a2719263fd04
test_study_series_find_inconsistency
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
262
diff
changeset
|
5280 'ProtocolName' : '' # Universal matching |
|
a2719263fd04
test_study_series_find_inconsistency
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
262
diff
changeset
|
5281 }, |
|
a2719263fd04
test_study_series_find_inconsistency
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
262
diff
changeset
|
5282 'Normalize' : normalize, |
|
a2719263fd04
test_study_series_find_inconsistency
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
262
diff
changeset
|
5283 })) |
|
a2719263fd04
test_study_series_find_inconsistency
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
262
diff
changeset
|
5284 |
|
a2719263fd04
test_study_series_find_inconsistency
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
262
diff
changeset
|
5285 |
|
a2719263fd04
test_study_series_find_inconsistency
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
262
diff
changeset
|
5286 ## |
|
a2719263fd04
test_study_series_find_inconsistency
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
262
diff
changeset
|
5287 ## "StudyInstanceUID" is present, and has VR "UI" => wildcard is not allowed |
|
a2719263fd04
test_study_series_find_inconsistency
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
262
diff
changeset
|
5288 ## |
|
a2719263fd04
test_study_series_find_inconsistency
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
262
diff
changeset
|
5289 |
|
a2719263fd04
test_study_series_find_inconsistency
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
262
diff
changeset
|
5290 for level in [ 'Study', 'Series' ] : |
|
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5291 for normalize in [ True, False ]: |
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5292 self.assertEqual(1, CountAnswers({ |
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5293 'Level' : level, |
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5294 'Query' : { |
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5295 'StudyInstanceUID' : '' # Universal matching |
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5296 }, |
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5297 'Normalize' : normalize, |
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5298 })) |
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5299 self.assertEqual(0, CountAnswers({ |
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5300 'Level' : level, |
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5301 'Query' : { |
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5302 'StudyInstanceUID' : 'MISMATCHED^VALUE' |
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5303 }, |
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5304 'Normalize' : normalize, |
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5305 })) |
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5306 self.assertEqual(1, CountAnswers({ |
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5307 'Level' : level, |
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5308 'Query' : { |
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5309 'StudyInstanceUID' : '4.5.6' # This is the actual value |
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5310 }, |
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5311 'Normalize' : normalize, |
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5312 })) |
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5313 |
| 269 | 5314 # Wildcard matching is not allowed for this VR |
|
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5315 # This test fails on Orthanc <= 1.5.8 |
| 269 | 5316 self.assertRaises(Exception, lambda: CountAnswers({ |
|
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5317 'Level' : level, |
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5318 'Query' : { |
| 269 | 5319 'StudyInstanceUID' : '*' |
|
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5320 }, |
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5321 'Normalize' : normalize, |
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5322 })) |
| 265 | 5323 |
| 5324 | |
| 5325 def test_rendered(self): | |
| 5326 # New in Orthanc 1.6.0 | |
| 5327 i = UploadInstance(_REMOTE, 'ColorTestMalaterre.dcm')['ID'] | |
| 5328 im = GetImage(_REMOTE, '/instances/%s/rendered' % i) | |
| 5329 self.assertEqual("RGB", im.mode) | |
| 5330 self.assertEqual(41, im.size[0]) | |
| 5331 self.assertEqual(41, im.size[1]) | |
| 5332 | |
| 5333 # http://effbot.org/zone/pil-comparing-images.htm | |
| 5334 truth = Image.open(GetDatabasePath('ColorTestMalaterre.png')) | |
| 5335 self.assertTrue(ImageChops.difference(im, truth).getbbox() is None) | |
| 5336 | |
| 5337 im = GetImage(_REMOTE, '/instances/%s/rendered?width=10' % i) | |
| 5338 self.assertEqual("RGB", im.mode) | |
| 5339 self.assertEqual(10, im.size[0]) | |
| 5340 self.assertEqual(10, im.size[1]) | |
| 5341 | |
| 5342 im = GetImage(_REMOTE, '/instances/%s/rendered?height=10' % i) | |
| 5343 self.assertEqual("RGB", im.mode) | |
| 5344 self.assertEqual(10, im.size[0]) | |
| 5345 self.assertEqual(10, im.size[1]) | |
| 5346 | |
| 5347 im = GetImage(_REMOTE, '/instances/%s/rendered?height=128' % i) | |
| 5348 self.assertEqual("RGB", im.mode) | |
| 5349 self.assertEqual(128, im.size[0]) | |
| 5350 self.assertEqual(128, im.size[1]) | |
| 5351 | |
| 5352 im = GetImage(_REMOTE, '/instances/%s/rendered?height=10&smooth=0' % i) | |
| 5353 self.assertEqual("RGB", im.mode) | |
| 5354 self.assertEqual(10, im.size[0]) | |
| 5355 self.assertEqual(10, im.size[1]) | |
| 5356 | |
| 5357 im = GetImage(_REMOTE, '/instances/%s/rendered?height=10&smooth=1' % i) | |
| 5358 self.assertEqual("RGB", im.mode) | |
| 5359 self.assertEqual(10, im.size[0]) | |
| 5360 self.assertEqual(10, im.size[1]) | |
| 5361 | |
| 5362 im = GetImage(_REMOTE, '/instances/%s/rendered?height=5&width=10' % i) | |
| 5363 self.assertEqual("RGB", im.mode) | |
| 5364 self.assertEqual(5, im.size[0]) | |
| 5365 self.assertEqual(5, im.size[1]) | |
| 5366 | |
| 5367 | |
| 5368 # Grayscale image | |
| 5369 i = UploadInstance(_REMOTE, 'Brainix/Flair/IM-0001-0001.dcm')['ID'] | |
| 5370 im = GetImage(_REMOTE, '/instances/%s/rendered' % i) | |
| 5371 self.assertEqual("L", im.mode) | |
| 5372 self.assertEqual(288, im.size[0]) | |
| 5373 self.assertEqual(288, im.size[1]) | |
| 5374 self.assertEqual(0, im.getpixel((0, 0))) | |
| 5375 | |
| 5376 # Those are the original windowing parameters that are written | |
| 5377 # inside the DICOM file | |
| 5378 im2 = GetImage(_REMOTE, '/instances/%s/rendered?window-center=248.009544468547&window-width=431.351843817788' % i) | |
| 5379 self.assertEqual("L", im2.mode) | |
| 5380 self.assertEqual(288, im2.size[0]) | |
| 5381 self.assertEqual(288, im2.size[1]) | |
| 5382 self.assertTrue(ImageChops.difference(im, im2).getbbox() is None) | |
| 5383 | |
| 5384 im = GetImage(_REMOTE, '/instances/%s/rendered?width=512&smooth=0' % i) | |
| 5385 self.assertEqual("L", im.mode) | |
| 5386 self.assertEqual(512, im.size[0]) | |
| 5387 self.assertEqual(512, im.size[1]) | |
| 5388 | |
| 5389 im = GetImage(_REMOTE, '/instances/%s/rendered?width=10&smooth=0' % i) | |
| 5390 self.assertEqual("L", im.mode) | |
| 5391 self.assertEqual(10, im.size[0]) | |
| 5392 self.assertEqual(10, im.size[1]) | |
| 5393 | |
| 5394 im = GetImage(_REMOTE, '/instances/%s/rendered?width=10&smooth=1' % i) | |
| 5395 self.assertEqual("L", im.mode) | |
| 5396 self.assertEqual(10, im.size[0]) | |
| 5397 self.assertEqual(10, im.size[1]) | |
| 5398 | |
| 5399 im = GetImage(_REMOTE, '/instances/%s/rendered?width=1&window-center=-1000' % i) | |
| 5400 self.assertEqual("L", im.mode) | |
| 5401 self.assertEqual(1, im.size[0]) | |
| 5402 self.assertEqual(1, im.size[1]) | |
| 5403 self.assertEqual(255, im.getpixel((0, 0))) | |
| 5404 | |
| 5405 im = GetImage(_REMOTE, '/instances/%s/rendered?width=1&window-center=1000' % i) | |
| 5406 self.assertEqual("L", im.mode) | |
| 5407 self.assertEqual(1, im.size[0]) | |
| 5408 self.assertEqual(1, im.size[1]) | |
| 5409 self.assertEqual(0, im.getpixel((0, 0))) | |
| 5410 | |
| 5411 | |
| 5412 # Test monochrome 1 | |
| 5413 i = UploadInstance(_REMOTE, 'Issue44/Monochrome1.dcm')['ID'] | |
| 5414 im = GetImage(_REMOTE, '/instances/%s/rendered' % i) | |
| 5415 self.assertEqual("L", im.mode) | |
| 5416 self.assertEqual(2010, im.size[0]) | |
| 5417 self.assertEqual(2446, im.size[1]) | |
| 5418 self.assertEqual(0, im.getpixel((0, 0))) | |
| 5419 im = GetImage(_REMOTE, '/instances/%s/rendered?width=20' % i) | |
| 5420 self.assertEqual("L", im.mode) | |
| 5421 self.assertEqual(20, im.size[0]) | |
| 5422 self.assertEqual(24, im.size[1]) | |
| 5423 im = GetImage(_REMOTE, '/instances/%s/rendered?height=24' % i) | |
| 5424 self.assertEqual("L", im.mode) | |
| 5425 self.assertEqual(20, im.size[0]) | |
| 5426 self.assertEqual(24, im.size[1]) | |
| 5427 im = GetImage(_REMOTE, '/instances/%s/rendered?width=10&height=24' % i) | |
| 5428 self.assertEqual("L", im.mode) | |
| 5429 self.assertEqual(10, im.size[0]) | |
| 5430 self.assertEqual(12, im.size[1]) | |
| 5431 im = GetImage(_REMOTE, '/instances/%s/rendered?width=40&height=24' % i) | |
| 5432 self.assertEqual("L", im.mode) | |
| 5433 self.assertEqual(20, im.size[0]) | |
| 5434 self.assertEqual(24, im.size[1]) | |
|
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5435 |
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5436 |
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5437 def test_bitbucket_issue_154(self): |
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5438 # "Matching against list of UID-s by C-MOVE" |
| 319 | 5439 # https://bugs.orthanc-server.com/show_bug.cgi?id=154 |
|
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5440 a = UploadInstance(_REMOTE, 'Issue154-d1.dcm') ['ID'] |
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5441 b = UploadInstance(_REMOTE, 'Issue154-d2.dcm') ['ID'] |
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5442 |
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5443 study = '1.2.826.0.1.3680043.8.498.35214236271657363033644818354280454731' |
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5444 series1 = '1.2.826.0.1.3680043.8.498.12243321927795467590791662266352305113' |
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5445 series2 = '1.2.826.0.1.3680043.8.498.43769499931624584079690260699536473555' |
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5446 |
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5447 # C-FIND is working on list of UIDs |
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5448 i = CallFindScu([ '-k', 'QueryRetrieveLevel=SERIES', |
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5449 '-k', 'StudyInstanceUID=%s' % study, |
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5450 '-k', 'SeriesInstanceUID=%s\\%s' % (series1, series2) ]) |
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5451 series = re.findall('\(0020,000e\).*?\[(.*?)\]', i) |
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5452 self.assertEqual(2, len(series)) |
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5453 self.assertTrue(series1 in series) |
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5454 self.assertTrue(series2 in series) |
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5455 |
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5456 # Individual retrieval is working in Orthanc < 1.6.0 |
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5457 self.assertEqual(0, len(DoGet(_LOCAL, '/instances'))) |
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5458 self.assertTrue(MonitorJob(_REMOTE, lambda: CallMoveScu([ |
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5459 '--study', '-k', 'QueryRetrieveLevel=SERIES', |
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5460 '-k', 'StudyInstanceUID=%s' % study, |
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5461 '-k', 'SeriesInstanceUID=%s' % series1, |
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5462 ]))) |
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5463 self.assertTrue(MonitorJob(_REMOTE, lambda: CallMoveScu([ |
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5464 '--study', '-k', 'QueryRetrieveLevel=SERIES', |
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5465 '-k', 'StudyInstanceUID=%s' % study, |
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5466 '-k', 'SeriesInstanceUID=%s' % series2, |
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5467 ]))) |
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5468 self.assertEqual(2, len(DoGet(_LOCAL, '/instances'))) |
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5469 |
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5470 DropOrthanc(_LOCAL) |
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5471 |
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5472 # But list matching is working only in Orthanc >= 1.6.0 |
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5473 self.assertEqual(0, len(DoGet(_LOCAL, '/instances'))) |
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5474 self.assertTrue(MonitorJob(_REMOTE, lambda: CallMoveScu([ |
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5475 '--study', '-k', 'QueryRetrieveLevel=SERIES', |
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5476 '-k', 'StudyInstanceUID=%s' % study, |
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5477 '-k', 'SeriesInstanceUID=%s\\%s' % (series1, series2), |
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5478 ]))) |
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5479 self.assertEqual(2, len(DoGet(_LOCAL, '/instances'))) |
|
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5480 |
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5481 |
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|
5482 def test_storage_commitment_api(self): |
|
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5483 # Storage commitment is available since Orthanc 1.6.0 |
|
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5484 |
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5485 def WaitTransaction(uid): |
|
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5486 while True: |
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5487 s = DoGet(_REMOTE, '/storage-commitment/%s' % uid) |
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5488 if s['Status'] != 'Pending': |
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5489 return s |
|
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|
5490 else: |
|
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5491 time.sleep(0.01) |
|
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5492 |
| 281 | 5493 instance = UploadInstance(_REMOTE, 'DummyCT.dcm') |
|
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5494 sopClassUid = '1.2.840.10008.5.1.4.1.1.4' |
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5495 sopInstanceUid = '1.2.840.113619.2.176.2025.1499492.7040.1171286242.109' |
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5496 |
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5497 # Against self |
| 281 | 5498 transaction = DoPost(_REMOTE, '/modalities/self/storage-commitment', { |
| 5499 "DicomInstances" : [ [ sopClassUid, sopInstanceUid ] ], | |
| 5500 }) ['ID'] | |
|
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5501 self.assertTrue(transaction.startswith('2.25.')) |
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5502 |
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5503 result = WaitTransaction(transaction) |
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|
5504 self.assertEqual('ORTHANC', result['RemoteAET']) |
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|
5505 self.assertEqual('Success', result['Status']) |
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|
5506 self.assertEqual(1, len(result['Success'])) |
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|
5507 self.assertEqual(0, len(result['Failures'])) |
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|
5508 self.assertEqual(sopClassUid, result['Success'][0]['SOPClassUID']) |
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|
5509 self.assertEqual(sopInstanceUid, result['Success'][0]['SOPInstanceUID']) |
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|
5510 |
| 281 | 5511 tmp = DoPost(_REMOTE, '/modalities/self/storage-commitment', { |
| 5512 "DicomInstances" : [ | |
| 5513 { 'SOPClassUID' : sopClassUid, | |
| 5514 'SOPInstanceUID' : sopInstanceUid }, | |
| 5515 ], | |
| 5516 }) | |
| 5517 self.assertEqual(tmp['Path'], '/storage-commitment/%s' % tmp['ID']) | |
| 5518 self.assertEqual(result, WaitTransaction(transaction)) | |
| 5519 | |
| 5520 tmp = DoPost(_REMOTE, '/modalities/self/storage-commitment', { | |
| 5521 "Resources" : [ | |
| 5522 instance['ID'], | |
| 5523 instance['ParentSeries'], | |
| 5524 instance['ParentStudy'], | |
| 5525 instance['ParentPatient'], | |
| 5526 ] | |
| 5527 }) | |
|
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5528 self.assertEqual(tmp['Path'], '/storage-commitment/%s' % tmp['ID']) |
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|
5529 self.assertEqual(result, WaitTransaction(transaction)) |
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|
5530 |
|
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|
5531 |
| 281 | 5532 transaction = DoPost(_REMOTE, '/modalities/self/storage-commitment', { |
| 5533 "DicomInstances" : [ | |
| 5534 [ 'nope', 'nope2' ], | |
| 5535 [ sopClassUid, sopInstanceUid ], | |
| 5536 ], | |
| 5537 }) ['ID'] | |
|
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|
5538 self.assertTrue(transaction.startswith('2.25.')) |
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|
5539 |
|
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|
5540 result = WaitTransaction(transaction) |
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|
5541 self.assertEqual('ORTHANC', result['RemoteAET']) |
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|
5542 self.assertEqual('Failure', result['Status']) |
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|
5543 self.assertEqual(1, len(result['Success'])) |
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|
5544 self.assertEqual(1, len(result['Failures'])) |
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|
5545 self.assertEqual(sopClassUid, result['Success'][0]['SOPClassUID']) |
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|
5546 self.assertEqual(sopInstanceUid, result['Success'][0]['SOPInstanceUID']) |
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|
5547 self.assertEqual('nope', result['Failures'][0]['SOPClassUID']) |
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|
5548 self.assertEqual('nope2', result['Failures'][0]['SOPInstanceUID']) |
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|
5549 self.assertEqual(274, result['Failures'][0]['FailureReason']) |
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|
5550 |
|
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|
5551 # Cannot remove items from a failed storage commitment transaction |
|
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|
5552 self.assertRaises(Exception, lambda: |
|
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|
5553 DoPost(_REMOTE, '/storage-commitment/%s/remove' % transaction)) |
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|
5554 |
|
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|
5555 |
|
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|
5556 # Against Orthanc 0.8.6, that does not support storage commitment |
|
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|
5557 self.assertRaises(Exception, lambda: |
| 281 | 5558 DoPost(_REMOTE, '/modalities/orthanctest/storage-commitment', { |
| 5559 "DicomInstances" : [ | |
| 5560 [ sopClassUid, sopInstanceUid ], | |
| 5561 ] | |
| 5562 })) | |
|
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|
5563 |
|
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changeset
|
5564 |
|
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changeset
|
5565 |
|
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|
5566 def test_storage_commitment_store(self): |
|
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5567 # Storage commitment is available since Orthanc 1.6.0 |
|
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|
5568 |
|
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|
5569 def WaitTransaction(uid): |
|
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|
5570 while True: |
|
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|
5571 s = DoGet(_REMOTE, '/storage-commitment/%s' % uid) |
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|
5572 if s['Status'] != 'Pending': |
|
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|
5573 return s |
|
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|
5574 else: |
|
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|
5575 time.sleep(0.01) |
|
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|
5576 |
|
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|
5577 i = UploadInstance(_REMOTE, 'DummyCT.dcm')['ID'] |
|
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|
5578 self.assertEqual(1, len(DoGet(_REMOTE, '/instances'))) |
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|
5579 self.assertEqual(0, len(DoGet(_LOCAL, '/instances'))) |
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|
5580 |
|
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|
5581 # The Orthanc 0.8.6 from "_LOCAL" does not support storage commitment |
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|
5582 self.assertRaises(Exception, lambda: DoPost(_REMOTE, '/modalities/orthanctest/store', { |
|
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|
5583 'Resources' : [ i ], |
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5584 'StorageCommitment' : True, |
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5585 })) |
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|
5586 |
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|
5587 j = DoPost(_REMOTE, '/modalities/orthanctest/store', { |
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|
5588 'Resources' : [ i ], |
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5589 'StorageCommitment' : False, |
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|
5590 }) |
|
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|
5591 self.assertEqual(1, len(DoGet(_LOCAL, '/instances'))) |
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|
5592 |
|
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|
5593 j = DoPost(_REMOTE, '/modalities/self/store', { |
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|
5594 'Resources' : [ i ], |
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|
5595 'StorageCommitment' : True, |
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|
5596 }) |
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|
5597 |
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|
5598 transaction = j['StorageCommitmentTransactionUID'] |
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|
5599 self.assertTrue(transaction.startswith('2.25.')) |
|
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|
5600 |
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|
5601 result = WaitTransaction(transaction) |
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|
5602 self.assertEqual('ORTHANC', result['RemoteAET']) |
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|
5603 self.assertEqual('Success', result['Status']) |
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|
5604 self.assertEqual(1, len(result['Success'])) |
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|
5605 self.assertEqual(0, len(result['Failures'])) |
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|
5606 self.assertEqual('1.2.840.10008.5.1.4.1.1.4', result['Success'][0]['SOPClassUID']) |
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|
5607 self.assertEqual('1.2.840.113619.2.176.2025.1499492.7040.1171286242.109', |
|
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|
5608 result['Success'][0]['SOPInstanceUID']) |
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|
5609 |
|
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|
5610 self.assertEqual(1, len(DoGet(_REMOTE, '/instances'))) |
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|
5611 DoPost(_REMOTE, '/storage-commitment/%s/remove' % transaction) |
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|
5612 self.assertEqual(0, len(DoGet(_REMOTE, '/instances'))) |
|
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5613 |
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5614 |
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5615 def test_store_straight(self): # New in Orthanc 1.6.1 |
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5616 self.assertEqual(0, len(DoGet(_LOCAL, '/instances'))) |
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5617 self.assertEqual(0, len(DoGet(_REMOTE, '/instances'))) |
|
281a32ecc5c1
test_store_straight
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
281
diff
changeset
|
5618 |
|
281a32ecc5c1
test_store_straight
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
281
diff
changeset
|
5619 with open(GetDatabasePath('DummyCT.dcm'), 'rb') as f: |
|
281a32ecc5c1
test_store_straight
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
281
diff
changeset
|
5620 dicom = f.read() |
|
281a32ecc5c1
test_store_straight
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
281
diff
changeset
|
5621 |
|
281a32ecc5c1
test_store_straight
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
281
diff
changeset
|
5622 self.assertRaises(Exception, lambda: DoPost( |
|
281a32ecc5c1
test_store_straight
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
281
diff
changeset
|
5623 _REMOTE, '/modalities/orthanctest/store-straight', 'nope', 'nope')) |
|
281a32ecc5c1
test_store_straight
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
281
diff
changeset
|
5624 |
|
281a32ecc5c1
test_store_straight
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
281
diff
changeset
|
5625 answer = DoPost(_REMOTE, '/modalities/orthanctest/store-straight', dicom, 'nope') |
|
281a32ecc5c1
test_store_straight
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
281
diff
changeset
|
5626 |
|
281a32ecc5c1
test_store_straight
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
281
diff
changeset
|
5627 self.assertEqual('1.2.840.10008.5.1.4.1.1.4', |
|
281a32ecc5c1
test_store_straight
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
281
diff
changeset
|
5628 answer['SOPClassUID']) |
|
281a32ecc5c1
test_store_straight
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
281
diff
changeset
|
5629 self.assertEqual('1.2.840.113619.2.176.2025.1499492.7040.1171286242.109', |
|
281a32ecc5c1
test_store_straight
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
281
diff
changeset
|
5630 answer['SOPInstanceUID']) |
|
281a32ecc5c1
test_store_straight
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
281
diff
changeset
|
5631 |
|
281a32ecc5c1
test_store_straight
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
281
diff
changeset
|
5632 self.assertEqual(1, len(DoGet(_LOCAL, '/instances'))) |
|
281a32ecc5c1
test_store_straight
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
281
diff
changeset
|
5633 self.assertEqual(0, len(DoGet(_REMOTE, '/instances'))) |
|
289
4a70411ac9ad
test_storescu_transcoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
285
diff
changeset
|
5634 |
|
4a70411ac9ad
test_storescu_transcoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
285
diff
changeset
|
5635 |
|
4a70411ac9ad
test_storescu_transcoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
285
diff
changeset
|
5636 def test_storescu_transcoding(self): # New in Orthanc 1.7.0 |
|
4a70411ac9ad
test_storescu_transcoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
285
diff
changeset
|
5637 # Add a RLE-encoded DICOM file |
|
4a70411ac9ad
test_storescu_transcoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
285
diff
changeset
|
5638 i = UploadInstance(_REMOTE, 'TransferSyntaxes/1.2.840.10008.1.2.5.dcm')['ID'] |
|
4a70411ac9ad
test_storescu_transcoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
285
diff
changeset
|
5639 self.assertEqual(0, len(DoGet(_LOCAL, '/instances'))) |
|
4a70411ac9ad
test_storescu_transcoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
285
diff
changeset
|
5640 self.assertEqual(1, len(DoGet(_REMOTE, '/instances'))) |
|
4a70411ac9ad
test_storescu_transcoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
285
diff
changeset
|
5641 rleSize = len(DoGet(_REMOTE, '/instances/%s/file' % i)) |
|
4a70411ac9ad
test_storescu_transcoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
285
diff
changeset
|
5642 |
|
4a70411ac9ad
test_storescu_transcoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
285
diff
changeset
|
5643 # Export the instance, with transcoding: "_REMOTE" is the |
|
4a70411ac9ad
test_storescu_transcoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
285
diff
changeset
|
5644 # Orthanc server being tested |
|
4a70411ac9ad
test_storescu_transcoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
285
diff
changeset
|
5645 try: |
|
4a70411ac9ad
test_storescu_transcoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
285
diff
changeset
|
5646 DoDelete(_REMOTE, '/modalities/toto') |
|
4a70411ac9ad
test_storescu_transcoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
285
diff
changeset
|
5647 except: |
|
4a70411ac9ad
test_storescu_transcoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
285
diff
changeset
|
5648 pass |
|
4a70411ac9ad
test_storescu_transcoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
285
diff
changeset
|
5649 |
|
4a70411ac9ad
test_storescu_transcoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
285
diff
changeset
|
5650 params = DoGet(_REMOTE, '/modalities?expand') ['orthanctest'] |
|
4a70411ac9ad
test_storescu_transcoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
285
diff
changeset
|
5651 DoPut(_REMOTE, '/modalities/toto', params) |
|
4a70411ac9ad
test_storescu_transcoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
285
diff
changeset
|
5652 DoPost(_REMOTE, '/modalities/toto/store', str(i), 'text/plain') |
|
4a70411ac9ad
test_storescu_transcoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
285
diff
changeset
|
5653 j = DoGet(_LOCAL, '/instances') |
|
4a70411ac9ad
test_storescu_transcoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
285
diff
changeset
|
5654 self.assertEqual(1, len(j)) |
|
4a70411ac9ad
test_storescu_transcoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
285
diff
changeset
|
5655 uncompressedSize = len(DoGet(_LOCAL, '/instances/%s/file' % j[0])) |
|
4a70411ac9ad
test_storescu_transcoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
285
diff
changeset
|
5656 self.assertTrue(uncompressedSize > rleSize / 2) |
|
4a70411ac9ad
test_storescu_transcoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
285
diff
changeset
|
5657 |
|
4a70411ac9ad
test_storescu_transcoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
285
diff
changeset
|
5658 # Export, with transcoding disabled => this fails |
|
4a70411ac9ad
test_storescu_transcoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
285
diff
changeset
|
5659 params['AllowTranscoding'] = False |
|
4a70411ac9ad
test_storescu_transcoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
285
diff
changeset
|
5660 DoPut(_REMOTE, '/modalities/toto', params) |
|
4a70411ac9ad
test_storescu_transcoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
285
diff
changeset
|
5661 self.assertRaises(Exception, lambda: DoPost(_REMOTE, '/modalities/toto/store', str(i), 'text/plain')) |
|
378
a4b8450a1158
fix test_storescu_transcoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
377
diff
changeset
|
5662 DoDelete(_REMOTE, '/modalities/toto') |
|
290
b5333f87065b
test_bitbucket_issue_169
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
289
diff
changeset
|
5663 |
|
b5333f87065b
test_bitbucket_issue_169
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
289
diff
changeset
|
5664 |
|
b5333f87065b
test_bitbucket_issue_169
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
289
diff
changeset
|
5665 def test_bitbucket_issue_169(self): |
|
b5333f87065b
test_bitbucket_issue_169
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
289
diff
changeset
|
5666 with open(GetDatabasePath('Issue169.dcm.bz2'), 'rb') as f: |
|
b5333f87065b
test_bitbucket_issue_169
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
289
diff
changeset
|
5667 dicom = bz2.decompress(f.read()) |
|
b5333f87065b
test_bitbucket_issue_169
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
289
diff
changeset
|
5668 |
|
b5333f87065b
test_bitbucket_issue_169
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
289
diff
changeset
|
5669 self.assertEqual('1.2.840.10008.1.2.1', GetTransferSyntax(dicom)) |
|
b5333f87065b
test_bitbucket_issue_169
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
289
diff
changeset
|
5670 |
|
b5333f87065b
test_bitbucket_issue_169
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
289
diff
changeset
|
5671 self.assertEqual(44350560, len(dicom)) |
|
b5333f87065b
test_bitbucket_issue_169
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
289
diff
changeset
|
5672 i = DoPost(_REMOTE, '/instances', dicom, 'application/dicom') ['ID'] |
|
b5333f87065b
test_bitbucket_issue_169
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
289
diff
changeset
|
5673 |
|
b5333f87065b
test_bitbucket_issue_169
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
289
diff
changeset
|
5674 tags = DoGet(_REMOTE, '/instances/%s/tags' % i) |
|
b5333f87065b
test_bitbucket_issue_169
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
289
diff
changeset
|
5675 self.assertEqual('NORMAL', tags['1337,1001']['Value']) |
|
b5333f87065b
test_bitbucket_issue_169
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
289
diff
changeset
|
5676 |
|
b5333f87065b
test_bitbucket_issue_169
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
289
diff
changeset
|
5677 self.assertEqual(0, len(DoGet(_LOCAL, '/instances'))) |
|
b5333f87065b
test_bitbucket_issue_169
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
289
diff
changeset
|
5678 DoPost(_REMOTE, '/modalities/orthanctest/store', str(i), 'text/plain') |
|
b5333f87065b
test_bitbucket_issue_169
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
289
diff
changeset
|
5679 j = DoGet(_LOCAL, '/instances') |
|
b5333f87065b
test_bitbucket_issue_169
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
289
diff
changeset
|
5680 self.assertEqual(1, len(j)) |
|
b5333f87065b
test_bitbucket_issue_169
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
289
diff
changeset
|
5681 |
|
b5333f87065b
test_bitbucket_issue_169
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
289
diff
changeset
|
5682 # In Orthanc <= 1.6.1, transfer syntax changed from "Explicit |
|
b5333f87065b
test_bitbucket_issue_169
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
289
diff
changeset
|
5683 # VR Little Endian" (1.2.840.10008.1.2.1) to "Implicit VR |
|
b5333f87065b
test_bitbucket_issue_169
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
289
diff
changeset
|
5684 # Little Endian" (1.2.840.10008.1.2) |
|
291
cfa785074c64
test_modify_transcode
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
290
diff
changeset
|
5685 self.assertEqual('1.2.840.10008.1.2.1', GetTransferSyntax( |
|
cfa785074c64
test_modify_transcode
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
290
diff
changeset
|
5686 DoGet(_LOCAL, '/instances/%s/file' % j[0]))) |
|
290
b5333f87065b
test_bitbucket_issue_169
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
289
diff
changeset
|
5687 |
|
b5333f87065b
test_bitbucket_issue_169
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
289
diff
changeset
|
5688 # In Orthanc <= 1.6.1, the value of the private tags was lost |
|
b5333f87065b
test_bitbucket_issue_169
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
289
diff
changeset
|
5689 # because of this transcoding |
|
b5333f87065b
test_bitbucket_issue_169
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
289
diff
changeset
|
5690 tags = DoGet(_LOCAL, '/instances/%s/tags' % j[0]) |
|
b5333f87065b
test_bitbucket_issue_169
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
289
diff
changeset
|
5691 self.assertEqual('NORMAL', tags['1337,1001']['Value']) |
|
291
cfa785074c64
test_modify_transcode
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
290
diff
changeset
|
5692 |
|
cfa785074c64
test_modify_transcode
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
290
diff
changeset
|
5693 |
|
302
22b6dd0f8c84
test_modify_transcode_study
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
301
diff
changeset
|
5694 def test_modify_transcode_instance(self): |
|
291
cfa785074c64
test_modify_transcode
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
290
diff
changeset
|
5695 i = UploadInstance(_REMOTE, 'KarstenHilbertRF.dcm')['ID'] |
|
cfa785074c64
test_modify_transcode
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
290
diff
changeset
|
5696 self.assertEqual('1.2.840.10008.1.2.1', GetTransferSyntax( |
|
cfa785074c64
test_modify_transcode
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
290
diff
changeset
|
5697 DoGet(_REMOTE, '/instances/%s/file' % i))) |
|
cfa785074c64
test_modify_transcode
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
290
diff
changeset
|
5698 |
|
299
c2144cf4bd83
HasGdcmPlugin() test
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
293
diff
changeset
|
5699 a = ExtractDicomTags(DoGet(_REMOTE, '/instances/%s/file' % i), [ 'SOPInstanceUID' ]) [0] |
|
c2144cf4bd83
HasGdcmPlugin() test
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
293
diff
changeset
|
5700 self.assertTrue(len(a) > 20) |
|
c2144cf4bd83
HasGdcmPlugin() test
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
293
diff
changeset
|
5701 |
|
c2144cf4bd83
HasGdcmPlugin() test
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
293
diff
changeset
|
5702 SYNTAXES = [ |
|
c2144cf4bd83
HasGdcmPlugin() test
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
293
diff
changeset
|
5703 '1.2.840.10008.1.2', |
|
c2144cf4bd83
HasGdcmPlugin() test
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
293
diff
changeset
|
5704 '1.2.840.10008.1.2.1', |
|
300
d6c2eb5a2603
disabling test on Deflated Explicit VR Little Endian
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
299
diff
changeset
|
5705 #'1.2.840.10008.1.2.1.99', # Deflated Explicit VR Little Endian (cannot be decoded in debug mode if Orthanc is statically linked against DCMTK 3.6.5) |
|
299
c2144cf4bd83
HasGdcmPlugin() test
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
293
diff
changeset
|
5706 '1.2.840.10008.1.2.2', |
|
c2144cf4bd83
HasGdcmPlugin() test
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
293
diff
changeset
|
5707 '1.2.840.10008.1.2.4.50', |
|
c2144cf4bd83
HasGdcmPlugin() test
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
293
diff
changeset
|
5708 '1.2.840.10008.1.2.4.51', |
|
c2144cf4bd83
HasGdcmPlugin() test
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
293
diff
changeset
|
5709 '1.2.840.10008.1.2.4.57', |
|
c2144cf4bd83
HasGdcmPlugin() test
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
293
diff
changeset
|
5710 '1.2.840.10008.1.2.4.70', |
|
c2144cf4bd83
HasGdcmPlugin() test
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
293
diff
changeset
|
5711 ] |
|
c2144cf4bd83
HasGdcmPlugin() test
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
293
diff
changeset
|
5712 |
| 304 | 5713 if HasGdcmPlugin(_REMOTE): |
|
299
c2144cf4bd83
HasGdcmPlugin() test
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
293
diff
changeset
|
5714 SYNTAXES = SYNTAXES + [ |
|
c2144cf4bd83
HasGdcmPlugin() test
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
293
diff
changeset
|
5715 '1.2.840.10008.1.2.4.80', # This makes DCMTK 3.6.2 crash |
|
c2144cf4bd83
HasGdcmPlugin() test
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
293
diff
changeset
|
5716 '1.2.840.10008.1.2.4.81', # This makes DCMTK 3.6.2 crash |
|
c2144cf4bd83
HasGdcmPlugin() test
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
293
diff
changeset
|
5717 '1.2.840.10008.1.2.4.90', # JPEG2k, unavailable without GDCM |
|
c2144cf4bd83
HasGdcmPlugin() test
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
293
diff
changeset
|
5718 '1.2.840.10008.1.2.4.91', # JPEG2k, unavailable without GDCM |
|
c2144cf4bd83
HasGdcmPlugin() test
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
293
diff
changeset
|
5719 ] |
|
c2144cf4bd83
HasGdcmPlugin() test
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
293
diff
changeset
|
5720 |
|
c2144cf4bd83
HasGdcmPlugin() test
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
293
diff
changeset
|
5721 for syntax in SYNTAXES: |
|
291
cfa785074c64
test_modify_transcode
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
290
diff
changeset
|
5722 transcoded = DoPost(_REMOTE, '/instances/%s/modify' % i, { |
|
cfa785074c64
test_modify_transcode
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
290
diff
changeset
|
5723 'Transcode' : syntax, |
|
299
c2144cf4bd83
HasGdcmPlugin() test
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
293
diff
changeset
|
5724 'Keep' : [ 'SOPInstanceUID' ], |
|
c2144cf4bd83
HasGdcmPlugin() test
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
293
diff
changeset
|
5725 'Force' : True, |
|
291
cfa785074c64
test_modify_transcode
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
290
diff
changeset
|
5726 }) |
|
cfa785074c64
test_modify_transcode
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
290
diff
changeset
|
5727 |
|
cfa785074c64
test_modify_transcode
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
290
diff
changeset
|
5728 self.assertEqual(syntax, GetTransferSyntax(transcoded)) |
|
292
e1827a4f5d3b
test_archive_transcode
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
291
diff
changeset
|
5729 |
|
299
c2144cf4bd83
HasGdcmPlugin() test
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
293
diff
changeset
|
5730 b = ExtractDicomTags(transcoded, [ 'SOPInstanceUID' ]) [0] |
|
c2144cf4bd83
HasGdcmPlugin() test
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
293
diff
changeset
|
5731 self.assertTrue(len(b) > 20) |
|
c2144cf4bd83
HasGdcmPlugin() test
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
293
diff
changeset
|
5732 if syntax in [ '1.2.840.10008.1.2.4.50', |
|
c2144cf4bd83
HasGdcmPlugin() test
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
293
diff
changeset
|
5733 '1.2.840.10008.1.2.4.51', |
|
c2144cf4bd83
HasGdcmPlugin() test
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
293
diff
changeset
|
5734 '1.2.840.10008.1.2.4.81', |
|
c2144cf4bd83
HasGdcmPlugin() test
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
293
diff
changeset
|
5735 '1.2.840.10008.1.2.4.91' ]: |
|
c2144cf4bd83
HasGdcmPlugin() test
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
293
diff
changeset
|
5736 # Lossy transcoding: The SOP instance UID must have changed |
|
c2144cf4bd83
HasGdcmPlugin() test
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
293
diff
changeset
|
5737 self.assertNotEqual(a, b) |
|
c2144cf4bd83
HasGdcmPlugin() test
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
293
diff
changeset
|
5738 else: |
|
c2144cf4bd83
HasGdcmPlugin() test
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
293
diff
changeset
|
5739 self.assertEqual(a, b) |
|
292
e1827a4f5d3b
test_archive_transcode
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
291
diff
changeset
|
5740 |
|
e1827a4f5d3b
test_archive_transcode
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
291
diff
changeset
|
5741 def test_archive_transcode(self): |
|
e1827a4f5d3b
test_archive_transcode
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
291
diff
changeset
|
5742 info = UploadInstance(_REMOTE, 'KarstenHilbertRF.dcm') |
|
e1827a4f5d3b
test_archive_transcode
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
291
diff
changeset
|
5743 |
|
293
032722c3e919
extended test_archive_transcode
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
292
diff
changeset
|
5744 # GET on "/media" |
|
292
e1827a4f5d3b
test_archive_transcode
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
291
diff
changeset
|
5745 z = GetArchive(_REMOTE, '/patients/%s/media' % info['ParentPatient']) |
|
e1827a4f5d3b
test_archive_transcode
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
291
diff
changeset
|
5746 self.assertEqual(2, len(z.namelist())) |
|
e1827a4f5d3b
test_archive_transcode
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
291
diff
changeset
|
5747 self.assertEqual('1.2.840.10008.1.2.1', GetTransferSyntax(z.read('IMAGES/IM0'))) |
|
e1827a4f5d3b
test_archive_transcode
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
291
diff
changeset
|
5748 |
|
e1827a4f5d3b
test_archive_transcode
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
291
diff
changeset
|
5749 self.assertRaises(Exception, lambda: DoGet(_REMOTE, '/patients/%s/media?transcode=nope' % info['ParentPatient'])) |
|
e1827a4f5d3b
test_archive_transcode
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
291
diff
changeset
|
5750 |
|
e1827a4f5d3b
test_archive_transcode
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
291
diff
changeset
|
5751 z = GetArchive(_REMOTE, '/patients/%s/media?transcode=1.2.840.10008.1.2.4.50' % info['ParentPatient']) |
|
e1827a4f5d3b
test_archive_transcode
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
291
diff
changeset
|
5752 self.assertEqual('1.2.840.10008.1.2.4.50', GetTransferSyntax(z.read('IMAGES/IM0'))) |
|
e1827a4f5d3b
test_archive_transcode
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
291
diff
changeset
|
5753 |
|
e1827a4f5d3b
test_archive_transcode
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
291
diff
changeset
|
5754 z = GetArchive(_REMOTE, '/studies/%s/media?transcode=1.2.840.10008.1.2.4.51' % info['ParentStudy']) |
|
e1827a4f5d3b
test_archive_transcode
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
291
diff
changeset
|
5755 self.assertEqual('1.2.840.10008.1.2.4.51', GetTransferSyntax(z.read('IMAGES/IM0'))) |
|
e1827a4f5d3b
test_archive_transcode
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
291
diff
changeset
|
5756 |
|
e1827a4f5d3b
test_archive_transcode
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
291
diff
changeset
|
5757 z = GetArchive(_REMOTE, '/series/%s/media?transcode=1.2.840.10008.1.2.4.57' % info['ParentSeries']) |
|
e1827a4f5d3b
test_archive_transcode
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
291
diff
changeset
|
5758 self.assertEqual('1.2.840.10008.1.2.4.57', GetTransferSyntax(z.read('IMAGES/IM0'))) |
|
e1827a4f5d3b
test_archive_transcode
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
291
diff
changeset
|
5759 |
|
293
032722c3e919
extended test_archive_transcode
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
292
diff
changeset
|
5760 |
|
032722c3e919
extended test_archive_transcode
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
292
diff
changeset
|
5761 # POST on "/media" |
|
032722c3e919
extended test_archive_transcode
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
292
diff
changeset
|
5762 self.assertRaises(Exception, lambda: PostArchive( |
|
032722c3e919
extended test_archive_transcode
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
292
diff
changeset
|
5763 _REMOTE, '/patients/%s/media' % info['ParentPatient'], { 'Transcode' : 'nope' })) |
|
032722c3e919
extended test_archive_transcode
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
292
diff
changeset
|
5764 |
|
032722c3e919
extended test_archive_transcode
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
292
diff
changeset
|
5765 z = PostArchive(_REMOTE, '/patients/%s/media' % info['ParentPatient'], { |
|
032722c3e919
extended test_archive_transcode
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
292
diff
changeset
|
5766 'Transcode' : '1.2.840.10008.1.2.4.50', |
|
032722c3e919
extended test_archive_transcode
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
292
diff
changeset
|
5767 }) |
|
032722c3e919
extended test_archive_transcode
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
292
diff
changeset
|
5768 self.assertEqual('1.2.840.10008.1.2.4.50', GetTransferSyntax(z.read('IMAGES/IM0'))) |
|
032722c3e919
extended test_archive_transcode
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
292
diff
changeset
|
5769 |
|
032722c3e919
extended test_archive_transcode
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
292
diff
changeset
|
5770 z = PostArchive(_REMOTE, '/studies/%s/media' % info['ParentStudy'], { |
|
032722c3e919
extended test_archive_transcode
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
292
diff
changeset
|
5771 'Transcode' : '1.2.840.10008.1.2.4.51', |
|
032722c3e919
extended test_archive_transcode
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
292
diff
changeset
|
5772 }) |
|
032722c3e919
extended test_archive_transcode
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
292
diff
changeset
|
5773 self.assertEqual('1.2.840.10008.1.2.4.51', GetTransferSyntax(z.read('IMAGES/IM0'))) |
|
032722c3e919
extended test_archive_transcode
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
292
diff
changeset
|
5774 |
|
032722c3e919
extended test_archive_transcode
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
292
diff
changeset
|
5775 z = PostArchive(_REMOTE, '/series/%s/media' % info['ParentSeries'], { |
|
032722c3e919
extended test_archive_transcode
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
292
diff
changeset
|
5776 'Transcode' : '1.2.840.10008.1.2.4.57', |
|
032722c3e919
extended test_archive_transcode
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
292
diff
changeset
|
5777 }) |
|
032722c3e919
extended test_archive_transcode
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
292
diff
changeset
|
5778 self.assertEqual('1.2.840.10008.1.2.4.57', GetTransferSyntax(z.read('IMAGES/IM0'))) |
|
032722c3e919
extended test_archive_transcode
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
292
diff
changeset
|
5779 |
|
032722c3e919
extended test_archive_transcode
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
292
diff
changeset
|
5780 |
|
032722c3e919
extended test_archive_transcode
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
292
diff
changeset
|
5781 # GET on "/archive" |
|
292
e1827a4f5d3b
test_archive_transcode
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
291
diff
changeset
|
5782 z = GetArchive(_REMOTE, '/patients/%s/archive' % info['ParentPatient']) |
|
e1827a4f5d3b
test_archive_transcode
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
291
diff
changeset
|
5783 self.assertEqual(1, len(z.namelist())) |
|
e1827a4f5d3b
test_archive_transcode
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
291
diff
changeset
|
5784 self.assertEqual('1.2.840.10008.1.2.1', GetTransferSyntax(z.read(z.namelist()[0]))) |
|
e1827a4f5d3b
test_archive_transcode
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
291
diff
changeset
|
5785 |
|
e1827a4f5d3b
test_archive_transcode
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
291
diff
changeset
|
5786 self.assertRaises(Exception, lambda: DoGet(_REMOTE, '/patients/%s/archive?transcode=nope' % info['ParentPatient'])) |
|
e1827a4f5d3b
test_archive_transcode
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
291
diff
changeset
|
5787 |
|
e1827a4f5d3b
test_archive_transcode
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
291
diff
changeset
|
5788 z = GetArchive(_REMOTE, '/patients/%s/archive?transcode=1.2.840.10008.1.2' % info['ParentPatient']) |
|
e1827a4f5d3b
test_archive_transcode
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
291
diff
changeset
|
5789 self.assertEqual('1.2.840.10008.1.2', GetTransferSyntax(z.read(z.namelist()[0]))) |
|
e1827a4f5d3b
test_archive_transcode
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
291
diff
changeset
|
5790 |
|
e1827a4f5d3b
test_archive_transcode
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
291
diff
changeset
|
5791 z = GetArchive(_REMOTE, '/studies/%s/archive?transcode=1.2.840.10008.1.2.2' % info['ParentStudy']) |
|
e1827a4f5d3b
test_archive_transcode
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
291
diff
changeset
|
5792 self.assertEqual('1.2.840.10008.1.2.2', GetTransferSyntax(z.read(z.namelist()[0]))) |
|
e1827a4f5d3b
test_archive_transcode
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
291
diff
changeset
|
5793 |
|
e1827a4f5d3b
test_archive_transcode
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
291
diff
changeset
|
5794 z = GetArchive(_REMOTE, '/series/%s/archive?transcode=1.2.840.10008.1.2.4.70' % info['ParentSeries']) |
|
e1827a4f5d3b
test_archive_transcode
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
291
diff
changeset
|
5795 self.assertEqual('1.2.840.10008.1.2.4.70', GetTransferSyntax(z.read(z.namelist()[0]))) |
|
293
032722c3e919
extended test_archive_transcode
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
292
diff
changeset
|
5796 |
|
032722c3e919
extended test_archive_transcode
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
292
diff
changeset
|
5797 |
|
032722c3e919
extended test_archive_transcode
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
292
diff
changeset
|
5798 # POST on "/archive" |
|
032722c3e919
extended test_archive_transcode
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
292
diff
changeset
|
5799 self.assertRaises(Exception, lambda: PostArchive( |
|
032722c3e919
extended test_archive_transcode
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
292
diff
changeset
|
5800 _REMOTE, '/patients/%s/archive' % info['ParentPatient'], { 'Transcode' : 'nope' })) |
|
032722c3e919
extended test_archive_transcode
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
292
diff
changeset
|
5801 |
|
032722c3e919
extended test_archive_transcode
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
292
diff
changeset
|
5802 z = PostArchive(_REMOTE, '/patients/%s/archive' % info['ParentPatient'], { |
|
032722c3e919
extended test_archive_transcode
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
292
diff
changeset
|
5803 'Transcode' : '1.2.840.10008.1.2.4.50', |
|
032722c3e919
extended test_archive_transcode
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
292
diff
changeset
|
5804 }) |
|
032722c3e919
extended test_archive_transcode
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
292
diff
changeset
|
5805 self.assertEqual('1.2.840.10008.1.2.4.50', GetTransferSyntax(z.read(z.namelist()[0]))) |
|
032722c3e919
extended test_archive_transcode
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
292
diff
changeset
|
5806 |
|
032722c3e919
extended test_archive_transcode
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
292
diff
changeset
|
5807 z = PostArchive(_REMOTE, '/studies/%s/archive' % info['ParentStudy'], { |
|
032722c3e919
extended test_archive_transcode
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
292
diff
changeset
|
5808 'Transcode' : '1.2.840.10008.1.2.4.51', |
|
032722c3e919
extended test_archive_transcode
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
292
diff
changeset
|
5809 }) |
|
032722c3e919
extended test_archive_transcode
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
292
diff
changeset
|
5810 self.assertEqual('1.2.840.10008.1.2.4.51', GetTransferSyntax(z.read(z.namelist()[0]))) |
|
032722c3e919
extended test_archive_transcode
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
292
diff
changeset
|
5811 |
|
032722c3e919
extended test_archive_transcode
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
292
diff
changeset
|
5812 z = PostArchive(_REMOTE, '/series/%s/archive' % info['ParentSeries'], { |
|
032722c3e919
extended test_archive_transcode
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
292
diff
changeset
|
5813 'Transcode' : '1.2.840.10008.1.2.4.57', |
|
032722c3e919
extended test_archive_transcode
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
292
diff
changeset
|
5814 }) |
|
032722c3e919
extended test_archive_transcode
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
292
diff
changeset
|
5815 self.assertEqual('1.2.840.10008.1.2.4.57', GetTransferSyntax(z.read(z.namelist()[0]))) |
|
292
e1827a4f5d3b
test_archive_transcode
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
291
diff
changeset
|
5816 |
|
293
032722c3e919
extended test_archive_transcode
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
292
diff
changeset
|
5817 |
|
032722c3e919
extended test_archive_transcode
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
292
diff
changeset
|
5818 # "/tools/create-*" |
|
032722c3e919
extended test_archive_transcode
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
292
diff
changeset
|
5819 z = PostArchive(_REMOTE, '/tools/create-archive', { |
|
032722c3e919
extended test_archive_transcode
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
292
diff
changeset
|
5820 'Resources' : [ info['ParentStudy'] ], |
|
032722c3e919
extended test_archive_transcode
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
292
diff
changeset
|
5821 'Transcode' : '1.2.840.10008.1.2.4.50', |
|
032722c3e919
extended test_archive_transcode
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
292
diff
changeset
|
5822 }) |
|
032722c3e919
extended test_archive_transcode
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
292
diff
changeset
|
5823 self.assertEqual(1, len(z.namelist())) |
|
032722c3e919
extended test_archive_transcode
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
292
diff
changeset
|
5824 self.assertEqual('1.2.840.10008.1.2.4.50', GetTransferSyntax(z.read(z.namelist()[0]))) |
|
032722c3e919
extended test_archive_transcode
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
292
diff
changeset
|
5825 |
|
032722c3e919
extended test_archive_transcode
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
292
diff
changeset
|
5826 z = PostArchive(_REMOTE, '/tools/create-media', { |
|
032722c3e919
extended test_archive_transcode
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
292
diff
changeset
|
5827 'Resources' : [ info['ParentStudy'] ], |
|
032722c3e919
extended test_archive_transcode
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
292
diff
changeset
|
5828 'Transcode' : '1.2.840.10008.1.2.4.51', |
|
032722c3e919
extended test_archive_transcode
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
292
diff
changeset
|
5829 }) |
|
032722c3e919
extended test_archive_transcode
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
292
diff
changeset
|
5830 self.assertEqual(2, len(z.namelist())) |
|
032722c3e919
extended test_archive_transcode
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
292
diff
changeset
|
5831 self.assertEqual('1.2.840.10008.1.2.4.51', GetTransferSyntax(z.read('IMAGES/IM0'))) |
|
032722c3e919
extended test_archive_transcode
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
292
diff
changeset
|
5832 |
|
032722c3e919
extended test_archive_transcode
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
292
diff
changeset
|
5833 z = PostArchive(_REMOTE, '/tools/create-media-extended', { |
|
032722c3e919
extended test_archive_transcode
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
292
diff
changeset
|
5834 'Resources' : [ info['ParentStudy'] ], |
|
032722c3e919
extended test_archive_transcode
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
292
diff
changeset
|
5835 'Transcode' : '1.2.840.10008.1.2.4.57', |
|
032722c3e919
extended test_archive_transcode
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
292
diff
changeset
|
5836 }) |
|
032722c3e919
extended test_archive_transcode
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
292
diff
changeset
|
5837 self.assertEqual(2, len(z.namelist())) |
|
032722c3e919
extended test_archive_transcode
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
292
diff
changeset
|
5838 self.assertEqual('1.2.840.10008.1.2.4.57', GetTransferSyntax(z.read('IMAGES/IM0'))) |
|
032722c3e919
extended test_archive_transcode
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
292
diff
changeset
|
5839 |
| 308 | 5840 |
|
301
6652d5720a45
test_modify_keep_source
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
300
diff
changeset
|
5841 def test_modify_keep_source(self): |
|
6652d5720a45
test_modify_keep_source
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
300
diff
changeset
|
5842 # https://groups.google.com/d/msg/orthanc-users/CgU-Wg8vDio/BY5ZWcDEAgAJ |
|
6652d5720a45
test_modify_keep_source
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
300
diff
changeset
|
5843 i = UploadInstance(_REMOTE, 'DummyCT.dcm') |
|
6652d5720a45
test_modify_keep_source
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
300
diff
changeset
|
5844 self.assertEqual(1, len(DoGet(_REMOTE, '/studies'))) |
|
6652d5720a45
test_modify_keep_source
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
300
diff
changeset
|
5845 |
|
6652d5720a45
test_modify_keep_source
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
300
diff
changeset
|
5846 j = DoPost(_REMOTE, '/studies/%s/modify' % i['ParentStudy'], { |
|
6652d5720a45
test_modify_keep_source
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
300
diff
changeset
|
5847 'Replace' : { |
|
6652d5720a45
test_modify_keep_source
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
300
diff
changeset
|
5848 'StationName' : 'TEST', |
|
6652d5720a45
test_modify_keep_source
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
300
diff
changeset
|
5849 }, |
|
6652d5720a45
test_modify_keep_source
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
300
diff
changeset
|
5850 'KeepSource' : True, |
|
6652d5720a45
test_modify_keep_source
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
300
diff
changeset
|
5851 }) |
|
6652d5720a45
test_modify_keep_source
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
300
diff
changeset
|
5852 |
|
6652d5720a45
test_modify_keep_source
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
300
diff
changeset
|
5853 s = DoGet(_REMOTE, '/studies') |
|
6652d5720a45
test_modify_keep_source
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
300
diff
changeset
|
5854 self.assertEqual(2, len(s)) |
|
6652d5720a45
test_modify_keep_source
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
300
diff
changeset
|
5855 self.assertTrue(i['ParentStudy'] in s) |
|
6652d5720a45
test_modify_keep_source
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
300
diff
changeset
|
5856 self.assertTrue(j['ID'] in s) |
|
6652d5720a45
test_modify_keep_source
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
300
diff
changeset
|
5857 |
|
6652d5720a45
test_modify_keep_source
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
300
diff
changeset
|
5858 DoDelete(_REMOTE, '/studies/%s' % j['ID']) |
|
6652d5720a45
test_modify_keep_source
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
300
diff
changeset
|
5859 self.assertEqual(1, len(DoGet(_REMOTE, '/studies'))) |
|
6652d5720a45
test_modify_keep_source
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
300
diff
changeset
|
5860 |
|
6652d5720a45
test_modify_keep_source
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
300
diff
changeset
|
5861 j = DoPost(_REMOTE, '/studies/%s/modify' % i['ParentStudy'], { |
|
6652d5720a45
test_modify_keep_source
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
300
diff
changeset
|
5862 'Replace' : { |
|
6652d5720a45
test_modify_keep_source
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
300
diff
changeset
|
5863 'StationName' : 'TEST', |
|
6652d5720a45
test_modify_keep_source
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
300
diff
changeset
|
5864 }, |
|
6652d5720a45
test_modify_keep_source
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
300
diff
changeset
|
5865 'KeepSource' : False, |
|
6652d5720a45
test_modify_keep_source
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
300
diff
changeset
|
5866 }) |
|
6652d5720a45
test_modify_keep_source
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
300
diff
changeset
|
5867 |
|
6652d5720a45
test_modify_keep_source
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
300
diff
changeset
|
5868 s = DoGet(_REMOTE, '/studies') |
|
6652d5720a45
test_modify_keep_source
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
300
diff
changeset
|
5869 self.assertEqual(1, len(s)) |
|
6652d5720a45
test_modify_keep_source
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
300
diff
changeset
|
5870 self.assertFalse(i['ParentStudy'] in s) |
|
6652d5720a45
test_modify_keep_source
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
300
diff
changeset
|
5871 self.assertTrue(j['ID'] in s) |
|
302
22b6dd0f8c84
test_modify_transcode_study
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
301
diff
changeset
|
5872 |
|
22b6dd0f8c84
test_modify_transcode_study
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
301
diff
changeset
|
5873 |
|
22b6dd0f8c84
test_modify_transcode_study
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
301
diff
changeset
|
5874 def test_modify_transcode_study(self): |
|
22b6dd0f8c84
test_modify_transcode_study
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
301
diff
changeset
|
5875 i = UploadInstance(_REMOTE, 'KarstenHilbertRF.dcm') |
|
22b6dd0f8c84
test_modify_transcode_study
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
301
diff
changeset
|
5876 self.assertEqual('1.2.840.10008.1.2.1', GetTransferSyntax( |
|
22b6dd0f8c84
test_modify_transcode_study
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
301
diff
changeset
|
5877 DoGet(_REMOTE, '/instances/%s/file' % i['ID']))) |
|
22b6dd0f8c84
test_modify_transcode_study
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
301
diff
changeset
|
5878 |
|
22b6dd0f8c84
test_modify_transcode_study
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
301
diff
changeset
|
5879 self.assertEqual(1, len(DoGet(_REMOTE, '/instances'))) |
|
22b6dd0f8c84
test_modify_transcode_study
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
301
diff
changeset
|
5880 j = DoPost(_REMOTE, '/studies/%s/modify' % i['ParentStudy'], { |
|
22b6dd0f8c84
test_modify_transcode_study
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
301
diff
changeset
|
5881 'Transcode' : '1.2.840.10008.1.2.4.50', |
|
22b6dd0f8c84
test_modify_transcode_study
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
301
diff
changeset
|
5882 'KeepSource' : False |
|
22b6dd0f8c84
test_modify_transcode_study
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
301
diff
changeset
|
5883 }) |
|
22b6dd0f8c84
test_modify_transcode_study
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
301
diff
changeset
|
5884 |
|
22b6dd0f8c84
test_modify_transcode_study
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
301
diff
changeset
|
5885 k = DoGet(_REMOTE, '/instances') |
|
22b6dd0f8c84
test_modify_transcode_study
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
301
diff
changeset
|
5886 self.assertEqual(1, len(k)) |
|
22b6dd0f8c84
test_modify_transcode_study
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
301
diff
changeset
|
5887 self.assertEqual(i['ID'], DoGet(_REMOTE, '/instances/%s/metadata?expand' % k[0]) ['ModifiedFrom']) |
|
22b6dd0f8c84
test_modify_transcode_study
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
301
diff
changeset
|
5888 self.assertEqual('1.2.840.10008.1.2.4.50', GetTransferSyntax( |
|
22b6dd0f8c84
test_modify_transcode_study
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
301
diff
changeset
|
5889 DoGet(_REMOTE, '/instances/%s/file' % k[0]))) |
|
22b6dd0f8c84
test_modify_transcode_study
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
301
diff
changeset
|
5890 |
|
305
ed20ead1a8b6
test_store_peer_transcoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
304
diff
changeset
|
5891 |
|
ed20ead1a8b6
test_store_peer_transcoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
304
diff
changeset
|
5892 def test_store_peer_transcoding(self): |
|
ed20ead1a8b6
test_store_peer_transcoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
304
diff
changeset
|
5893 i = UploadInstance(_REMOTE, 'KarstenHilbertRF.dcm')['ID'] |
|
ed20ead1a8b6
test_store_peer_transcoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
304
diff
changeset
|
5894 |
|
ed20ead1a8b6
test_store_peer_transcoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
304
diff
changeset
|
5895 SYNTAXES = [ |
|
ed20ead1a8b6
test_store_peer_transcoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
304
diff
changeset
|
5896 '1.2.840.10008.1.2', |
|
ed20ead1a8b6
test_store_peer_transcoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
304
diff
changeset
|
5897 '1.2.840.10008.1.2.1', |
|
ed20ead1a8b6
test_store_peer_transcoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
304
diff
changeset
|
5898 #'1.2.840.10008.1.2.1.99', # Deflated Explicit VR Little Endian (cannot be decoded in debug mode if Orthanc is statically linked against DCMTK 3.6.5) |
|
ed20ead1a8b6
test_store_peer_transcoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
304
diff
changeset
|
5899 '1.2.840.10008.1.2.2', |
|
ed20ead1a8b6
test_store_peer_transcoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
304
diff
changeset
|
5900 '1.2.840.10008.1.2.4.50', |
|
ed20ead1a8b6
test_store_peer_transcoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
304
diff
changeset
|
5901 '1.2.840.10008.1.2.4.51', |
|
ed20ead1a8b6
test_store_peer_transcoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
304
diff
changeset
|
5902 '1.2.840.10008.1.2.4.57', |
|
ed20ead1a8b6
test_store_peer_transcoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
304
diff
changeset
|
5903 '1.2.840.10008.1.2.4.70', |
|
ed20ead1a8b6
test_store_peer_transcoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
304
diff
changeset
|
5904 ] |
|
ed20ead1a8b6
test_store_peer_transcoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
304
diff
changeset
|
5905 |
|
ed20ead1a8b6
test_store_peer_transcoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
304
diff
changeset
|
5906 if HasGdcmPlugin(_REMOTE): |
|
ed20ead1a8b6
test_store_peer_transcoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
304
diff
changeset
|
5907 SYNTAXES = SYNTAXES + [ |
|
ed20ead1a8b6
test_store_peer_transcoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
304
diff
changeset
|
5908 '1.2.840.10008.1.2.4.80', # This makes DCMTK 3.6.2 crash |
|
ed20ead1a8b6
test_store_peer_transcoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
304
diff
changeset
|
5909 '1.2.840.10008.1.2.4.81', # This makes DCMTK 3.6.2 crash |
|
ed20ead1a8b6
test_store_peer_transcoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
304
diff
changeset
|
5910 '1.2.840.10008.1.2.4.90', # JPEG2k, unavailable without GDCM |
|
ed20ead1a8b6
test_store_peer_transcoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
304
diff
changeset
|
5911 '1.2.840.10008.1.2.4.91', # JPEG2k, unavailable without GDCM |
|
ed20ead1a8b6
test_store_peer_transcoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
304
diff
changeset
|
5912 ] |
|
ed20ead1a8b6
test_store_peer_transcoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
304
diff
changeset
|
5913 |
|
ed20ead1a8b6
test_store_peer_transcoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
304
diff
changeset
|
5914 for syntax in SYNTAXES: |
|
ed20ead1a8b6
test_store_peer_transcoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
304
diff
changeset
|
5915 body = { |
|
ed20ead1a8b6
test_store_peer_transcoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
304
diff
changeset
|
5916 'Resources' : [ i ], |
|
ed20ead1a8b6
test_store_peer_transcoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
304
diff
changeset
|
5917 } |
|
ed20ead1a8b6
test_store_peer_transcoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
304
diff
changeset
|
5918 |
|
ed20ead1a8b6
test_store_peer_transcoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
304
diff
changeset
|
5919 if syntax != '1.2.840.10008.1.2.1': |
|
ed20ead1a8b6
test_store_peer_transcoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
304
diff
changeset
|
5920 body['Transcode'] = syntax |
|
ed20ead1a8b6
test_store_peer_transcoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
304
diff
changeset
|
5921 |
|
ed20ead1a8b6
test_store_peer_transcoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
304
diff
changeset
|
5922 self.assertEqual(0, len(DoGet(_LOCAL, '/instances'))) |
|
ed20ead1a8b6
test_store_peer_transcoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
304
diff
changeset
|
5923 self.assertEqual(1, len(DoGet(_REMOTE, '/instances'))) |
|
ed20ead1a8b6
test_store_peer_transcoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
304
diff
changeset
|
5924 DoPost(_REMOTE, '/peers/peer/store', body, 'text/plain') |
|
ed20ead1a8b6
test_store_peer_transcoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
304
diff
changeset
|
5925 self.assertEqual(1, len(DoGet(_LOCAL, '/instances'))) |
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5926 self.assertEqual(1, len(DoGet(_REMOTE, '/instances'))) |
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5927 self.assertEqual(syntax, GetTransferSyntax( |
|
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5928 DoGet(_LOCAL, '/instances/%s/file' % DoGet(_LOCAL, '/instances') [0]))) |
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5929 |
|
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|
5930 DropOrthanc(_LOCAL) |
| 308 | 5931 |
| 5932 | |
| 295 | 5933 def test_getscu(self): |
| 307 | 5934 def CleanTarget(): |
| 5935 if os.path.isdir('/tmp/GETSCU'): | |
| 5936 shutil.rmtree('/tmp/GETSCU') | |
| 5937 os.makedirs('/tmp/GETSCU') | |
| 5938 | |
|
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5939 env = {} |
|
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5940 if _DOCKER: |
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5941 # This is "getscu" from DCMTK 3.6.5 compiled using LSB, |
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5942 # and running in a GNU/Linux distribution running DCMTK |
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5943 # 3.6.0. Tell "getscu" where it can find the DICOM dictionary. |
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5944 env['DCMDICTPATH'] = '/usr/share/libdcmtk2/dicom.dic' |
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5945 |
| 295 | 5946 # no transcoding required |
| 307 | 5947 UploadInstance(_REMOTE, 'Brainix/Flair/IM-0001-0001.dcm')['ID'] |
| 5948 | |
| 5949 CleanTarget() | |
| 295 | 5950 |
|
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|
5951 subprocess.check_call([ |
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5952 FindExecutable('getscu'), |
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5953 _REMOTE['Server'], |
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|
5954 str(_REMOTE['DicomPort']), |
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|
5955 '-aec', 'ORTHANC', |
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|
5956 '-aet', 'ORTHANCTEST', # pretend to be the other orthanc |
| 307 | 5957 '-k', '0020,000d=2.16.840.1.113669.632.20.1211.10000357775', |
|
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|
5958 '-k', '0008,0052=STUDY', |
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|
5959 '--output-directory', '/tmp/GETSCU/' |
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|
5960 ], env = env) |
| 295 | 5961 |
| 311 | 5962 f1 = '/tmp/GETSCU/MR.1.3.46.670589.11.0.0.11.4.2.0.8743.5.5396.2006120114314079549' |
| 5963 self.assertTrue(os.path.isfile(f1)) | |
| 5964 with open(f1, 'rb') as f: | |
| 5965 self.assertEqual('1.2.840.10008.1.2.1', GetTransferSyntax(f.read())) | |
| 5966 | |
| 307 | 5967 CleanTarget() |
| 295 | 5968 |
| 5969 # transcoding required | |
| 311 | 5970 UploadInstance(_REMOTE, 'TransferSyntaxes/1.2.840.10008.1.2.4.50.dcm') |
| 307 | 5971 |
| 5972 subprocess.check_call([ | |
| 5973 FindExecutable('getscu'), | |
| 5974 _REMOTE['Server'], | |
| 5975 str(_REMOTE['DicomPort']), | |
| 5976 '-aec', 'ORTHANC', | |
| 5977 '-aet', 'ORTHANCTEST', # pretend to be the other orthanc | |
| 311 | 5978 '-k', '0020,000d=2.16.840.1.113669.632.20.1211.10000357775\\1.2.840.113663.1298.6234813.1.298.20000329.1115122', |
| 307 | 5979 '-k', '0008,0052=STUDY', |
| 5980 '--output-directory', '/tmp/GETSCU/' | |
| 5981 ], env = env) | |
| 5982 | |
| 311 | 5983 self.assertTrue(os.path.isfile(f1)) |
| 5984 with open(f1, 'rb') as f: | |
| 5985 self.assertEqual('1.2.840.10008.1.2.1', GetTransferSyntax(f.read())) | |
| 5986 | |
| 5987 # This file is transcoded from "1.2.840.10008.1.2.4.50" to "1.2.840.10008.1.2.1" | |
| 5988 # (LittleEndianExplicit is proposed by default by "getscu") | |
| 5989 f2 = '/tmp/GETSCU/US.1.2.840.113663.1298.1.3.715.20000329.1115326' | |
| 5990 self.assertTrue(os.path.isfile(f2)) | |
| 5991 with open(f2, 'rb') as f: | |
| 5992 self.assertEqual('1.2.840.10008.1.2.1', GetTransferSyntax(f.read())) | |
|
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|
5993 |
|
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|
5994 |
|
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|
5995 def test_findscu_truncation(self): |
|
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5996 # https://groups.google.com/forum/#!msg/orthanc-users/FkckWAHvso8/UbRBAhQ5CwAJ |
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5997 # Fixed by: https://hg.orthanc-server.com/orthanc/rev/2724977419fb |
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5998 UploadInstance(_REMOTE, 'Multiframe.dcm') |
|
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|
5999 UploadInstance(_REMOTE, 'ColorTestImageJ.dcm') |
|
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|
6000 |
|
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|
6001 study = '1.3.46.670589.7.5.8.80001255161.20000323.151537.1' |
|
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|
6002 |
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|
6003 i = CallFindScu([ '-k', '0008,0052=STUDY', '-k', 'StudyInstanceUID' ]) |
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|
6004 result = re.findall('\(0020,000d\).*?\[(.*?)\]', i) |
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|
6005 self.assertEqual(2, len(result)) |
|
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|
6006 |
|
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|
6007 # The "StudyInstanceUID" is set as a list of 5 times the same |
|
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6008 # study, leading to a string of 249 characters |
|
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|
6009 i = CallFindScu([ '-k', '0008,0052=STUDY', '-k', |
|
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|
6010 'StudyInstanceUID=%s\\%s\\%s\\%s\\%s' % (( study, ) * 5) ]) |
|
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|
6011 result = re.findall('\(0020,000d\).*?\[(.*?)\]', i) |
|
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|
6012 self.assertEqual(1, len(result)) |
|
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|
6013 |
|
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|
6014 # The "StudyInstanceUID" is set as a list of 6 times the same |
|
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6015 # study, leading to a string of 299 characters. In Orthanc <= |
|
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|
6016 # 1.7.2, this is above the value of ORTHANC_MAXIMUM_TAG_LENGTH |
|
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6017 # == 256, and is thus wiped out by C-FIND SCP. As a |
|
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|
6018 # consequence, Orthanc <= 1.7.2 doesn't apply the filter on |
|
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|
6019 # "StudyInstanceUID" and returns all the available |
|
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|
6020 # studies (i.e. 2). This issue was fixed in Orthanc 1.7.3. |
|
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6021 i = CallFindScu([ '-k', '0008,0052=STUDY', '-k', |
|
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6022 'StudyInstanceUID=%s\\%s\\%s\\%s\\%s\\%s' % (( study, ) * 6) ]) |
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|
6023 result = re.findall('\(0020,000d\).*?\[(.*?)\]', i) |
|
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6024 self.assertEqual(1, len(result)) |
|
328
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|
6025 |
|
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|
6026 |
|
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changeset
|
6027 def test_store_compressed(self): |
|
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|
6028 with open(GetDatabasePath('DummyCT.dcm'), 'rb') as f: |
|
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|
6029 dicom = f.read() |
|
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|
6030 i = DoPost(_REMOTE, '/instances', dicom) ['ID'] |
|
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|
6031 sourceSize = len(dicom) |
|
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|
6032 |
|
328
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|
6033 self.assertEqual(0, len(DoGet(_LOCAL, '/instances'))) |
|
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|
6034 self.assertEqual(1, len(DoGet(_REMOTE, '/instances'))) |
|
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|
6035 |
|
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|
6036 # Sending to the local Orthanc 0.8.6 server, without compression: OK |
|
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|
6037 jobId = MonitorJob2(_REMOTE, lambda: DoPost( |
|
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6038 _REMOTE, '/peers/peer/store', { |
|
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6039 'Resources' : [ i ], |
|
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6040 'Synchronous' : False, |
|
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6041 })) |
|
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|
6042 |
|
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|
6043 job = DoGet(_REMOTE, '/jobs/%s' % jobId) |
|
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6044 self.assertFalse(job['Content']['Compress']) |
|
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6045 self.assertEqual('', job['Content']['Peer'][2]) # Password must not be reported |
|
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|
6046 self.assertEqual(str(sourceSize), job['Content']['Size']) |
|
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|
6047 |
|
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|
6048 self.assertEqual(1, len(DoGet(_LOCAL, '/instances'))) |
|
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|
6049 DropOrthanc(_LOCAL) |
|
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6050 |
|
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|
6051 # Sending to the local Orthanc 0.8.6 server, with compression: |
|
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6052 # Not supported by Orthanc 0.8.6 => failure |
|
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|
6053 self.assertRaises(Exception, lambda: DoPost(_REMOTE, '/peers/peer/store', { |
|
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|
6054 'Resources' : [ i ], |
|
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6055 'Compress' : True, |
|
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|
6056 })) |
|
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|
6057 self.assertEqual(0, len(DoGet(_LOCAL, '/instances'))) |
|
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|
6058 |
|
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|
6059 # Sending to the tested remote server, with compression: OK |
|
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|
6060 jobId = MonitorJob2(_REMOTE, lambda: DoPost( |
|
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|
6061 _REMOTE, '/peers/self/store', { |
|
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|
6062 'Resources' : [ i ], |
|
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|
6063 'Compress' : True, |
|
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6064 'Synchronous' : False, |
|
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|
6065 })) |
|
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|
6066 |
|
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6067 job = DoGet(_REMOTE, '/jobs/%s' % jobId) |
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6068 self.assertTrue(job['Content']['Compress']) |
|
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|
6069 |
|
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|
6070 # Compression must have divided the size of the sent data at least twice |
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|
6071 self.assertLess(int(job['Content']['Size']), sourceSize / 2) |
| 332 | 6072 |
| 6073 | |
| 6074 def test_move_ambra(self): | |
| 6075 # "Orthanc + Ambra: Query/Retrieve" (2020-08-25) | |
| 6076 # https://groups.google.com/g/orthanc-users/c/yIUnZ9v9-Zs/m/GQPXiAOiCQAJ | |
| 6077 | |
| 6078 UploadInstance(_REMOTE, '2019-06-17-VedranZdesic.dcm') | |
| 6079 | |
| 6080 self.assertFalse(MonitorJob(_REMOTE, lambda: CallMoveScu([ | |
| 6081 '--study', | |
| 6082 '-k', 'StudyInstanceUID=' | |
| 6083 ]))) | |
| 6084 | |
| 6085 self.assertFalse(MonitorJob(_REMOTE, lambda: CallMoveScu([ | |
| 6086 '--study', | |
| 6087 '-k', 'AccessionNumber=', | |
| 6088 ]))) | |
| 6089 | |
| 6090 self.assertFalse(MonitorJob(_REMOTE, lambda: CallMoveScu([ | |
| 6091 '--study', | |
| 6092 '-k', 'AccessionNumber=', | |
| 6093 '-k', 'StudyInstanceUID=' | |
| 6094 ]))) | |
| 6095 | |
| 6096 self.assertEqual(0, len(DoGet(_LOCAL, '/instances'))) | |
| 6097 self.assertTrue(MonitorJob(_REMOTE, lambda: CallMoveScu([ | |
| 6098 '--study', | |
| 6099 '-k', 'AccessionNumber=CT16000988', | |
| 6100 '-k', 'StudyInstanceUID=', | |
| 6101 ]))) | |
| 6102 self.assertEqual(1, len(DoGet(_LOCAL, '/instances'))) | |
| 6103 DropOrthanc(_LOCAL) | |
| 6104 | |
| 6105 self.assertEqual(0, len(DoGet(_LOCAL, '/instances'))) | |
| 6106 self.assertTrue(MonitorJob(_REMOTE, lambda: CallMoveScu([ | |
| 6107 '--study', | |
| 6108 '-k', 'AccessionNumber=CT16000988', | |
| 6109 '-k', 'StudyInstanceUID=1.2.840.113619.2.278.3.4194965761.659.1468842739.39', | |
| 6110 ]))) | |
| 6111 self.assertEqual(1, len(DoGet(_LOCAL, '/instances'))) | |
| 6112 DropOrthanc(_LOCAL) | |
| 6113 | |
| 6114 # This fails on Orthanc <= 1.7.3 | |
| 6115 self.assertEqual(0, len(DoGet(_LOCAL, '/instances'))) | |
| 6116 self.assertTrue(MonitorJob(_REMOTE, lambda: CallMoveScu([ | |
| 6117 '--study', | |
| 6118 '-k', 'AccessionNumber=', | |
| 6119 '-k', 'StudyInstanceUID=1.2.840.113619.2.278.3.4194965761.659.1468842739.39' | |
| 6120 ]))) | |
| 6121 self.assertEqual(1, len(DoGet(_LOCAL, '/instances'))) | |
| 6122 DropOrthanc(_LOCAL) | |
|
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6123 |
|
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|
6124 |
|
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6125 def test_decode_elscint(self): |
|
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6126 # https://groups.google.com/g/orthanc-users/c/d9anAx6lSis/m/qEzm1x3PAAAJ |
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6127 a = UploadInstance(_REMOTE, '2020-09-12-ELSCINT1-PMSCT_RLE1.dcm')['ID'] |
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6128 b = UploadInstance(_REMOTE, '2020-09-11-Christopher-ELSCINT1-Raw.dcm')['ID'] |
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6129 |
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|
6130 im = GetImage(_REMOTE, '/instances/%s/frames/0/preview' % a) |
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6131 self.assertEqual("L", im.mode) |
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6132 self.assertEqual(512, im.size[0]) |
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6133 self.assertEqual(512, im.size[1]) |
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|
6134 |
|
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|
6135 im = GetImage(_REMOTE, '/instances/%s/frames/0/preview' % b) |
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|
6136 self.assertEqual("L", im.mode) |
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|
6137 self.assertEqual(512, im.size[0]) |
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|
6138 self.assertEqual(512, im.size[1]) |
|
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6139 |
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|
6140 # The two tests below fail on Orthanc <= 1.7.3 |
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|
6141 raw = DoGet(_REMOTE, '/instances/%s/frames/0/raw' % a) |
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|
6142 self.assertEqual(512 * 512 * 2, len(raw)) |
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|
6143 |
|
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|
6144 raw = DoGet(_REMOTE, '/instances/%s/frames/0/raw' % b) |
|
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|
6145 self.assertEqual(512 * 512 * 2, len(raw)) |
|
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|
6146 |
|
334
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6147 |
|
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|
6148 def test_rest_modalities_in_study_2(self): |
|
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|
6149 # Problem reported by Alain Mazy on 2020-09-15 |
|
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|
6150 UploadInstance(_REMOTE, 'Comunix/Ct/IM-0001-0001.dcm') |
|
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|
6151 UploadInstance(_REMOTE, 'Comunix/Pet/IM-0001-0001.dcm') |
|
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|
6152 |
|
335
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|
6153 i = CallFindScu([ '-k', '0008,0052=STUDY', '-k', '0020,000d=', '-k', '0008,0061=' ]) |
|
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|
6154 modalitiesInStudy = re.findall('\(0008,0061\).*?\[(.*?)\]', i) |
|
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|
6155 self.assertEqual(1, len(modalitiesInStudy)) |
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|
6156 self.assertEqual('CT\\PT ', modalitiesInStudy[0]) |
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|
6157 |
|
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|
6158 for i in [ '', 'CT', 'PT', 'UX', 'UX\\MR', 'CT\\PT', 'UX\\PT', 'CT\\PT', 'UX\\CT\\PT' ]: |
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|
6159 # The empty string '' corresponds to universal matching. |
|
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changeset
|
6160 # The case where "i == 'CT'" failed in Orthanc <= 1.7.3. |
|
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changeset
|
6161 |
|
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changeset
|
6162 if i in [ 'UX', 'UX\\MR' ]: |
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changeset
|
6163 expected = 0 |
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|
6164 else: |
|
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changeset
|
6165 expected = 1 |
|
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|
6166 |
|
334
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changeset
|
6167 a = DoPost(_REMOTE, '/tools/find', { 'Level' : 'Study', |
|
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|
6168 'Query' : { 'ModalitiesInStudy' : i }}) |
|
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changeset
|
6169 self.assertEqual(expected, len(a)) |
|
334
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changeset
|
6170 |
|
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test_rest_modalities_in_study_2
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changeset
|
6171 i = CallFindScu([ '-k', '0008,0052=STUDY', '-k', '0020,000d=', '-k', '0008,0061=%s' % i ]) |
|
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|
6172 studyInstanceUid = re.findall('\(0020,000d\).*?\[(.*?)\]', i) |
|
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|
6173 self.assertEqual(expected, len(studyInstanceUid)) |
|
337
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|
6174 |
|
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|
6175 |
|
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|
6176 def test_webdav(self): |
|
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6177 self.assertRaises(Exception, lambda: DoPropFind(_REMOTE, '/webdav/', 2)) |
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|
6178 |
|
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|
6179 for suffix in [ '', '/' ]: |
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6180 f = DoPropFind(_REMOTE, '/webdav' + suffix, 0) |
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6181 self.assertEqual(1, len(f)) |
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6182 self.assertTrue('/webdav/' in f.keys()) |
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6183 self.assertTrue(f['/webdav/']['folder']) |
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6184 self.assertEqual('webdav', f['/webdav/']['displayname']) |
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|
6185 |
|
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|
6186 f = DoPropFind(_REMOTE, '/webdav' + suffix, 1) |
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|
6187 self.assertEqual(6, len(f)) |
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6188 self.assertTrue(f['/webdav/']['folder']) |
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|
6189 self.assertEqual('webdav', f['/webdav/']['displayname']) |
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6190 |
|
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|
6191 for i in [ 'by-dates', 'by-patients', 'by-studies', 'by-uids', 'uploads' ]: |
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6192 self.assertTrue(f['/webdav/%s' % i]['folder']) |
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|
6193 self.assertEqual(i, f['/webdav/%s' % i]['displayname']) |
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|
6194 |
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|
6195 for depth in [ 0, 1 ]: |
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6196 for suffix2 in [ '', '/' ]: |
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6197 g = DoPropFind(_REMOTE, '/webdav/%s%s' % (i, suffix2), depth) |
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6198 |
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6199 if i == 'uploads': |
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6200 # Empty folders might still exist in "/uploads/" |
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6201 self.assertTrue('/webdav/uploads/' in g) |
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6202 self.assertEqual('uploads', g['/webdav/uploads/']['displayname']) |
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6203 for j in g.items(): |
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6204 self.assertTrue(g.items()[0][1]['folder']) |
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6205 else: |
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|
6206 self.assertEqual(1, len(g)) |
|
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diff
changeset
|
6207 self.assertEqual('/webdav/%s/' % i, g.items()[0][0]) |
|
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diff
changeset
|
6208 self.assertTrue(g.items()[0][1]['folder']) |
|
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more tests of webdav
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341
diff
changeset
|
6209 self.assertEqual(i, g.items()[0][1]['displayname']) |
|
341
66a36befb208
extending Toolbox.DoPropFind()
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
337
diff
changeset
|
6210 |
|
342
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more tests of webdav
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diff
changeset
|
6211 self.assertEqual(0, len(DoGet(_REMOTE, '/patients'))) |
|
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diff
changeset
|
6212 with open(GetDatabasePath('DummyCT.dcm'), 'rb') as f: |
|
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diff
changeset
|
6213 DoPut(_REMOTE, '/webdav/uploads/dummy', f.read(), 'text/plain') |
|
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more tests of webdav
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diff
changeset
|
6214 |
|
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more tests of webdav
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parents:
341
diff
changeset
|
6215 while len(DoGet(_REMOTE, '/patients')) == 0: |
|
bf8369ea3ff1
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parents:
341
diff
changeset
|
6216 time.sleep(0.01) |
|
bf8369ea3ff1
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parents:
341
diff
changeset
|
6217 self.assertEqual(1, len(DoGet(_REMOTE, '/patients'))) |
|
337
ec13ace43bde
trying webdav tests
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
335
diff
changeset
|
6218 |
|
349
698898a93a10
test_log_categories
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
348
diff
changeset
|
6219 |
|
698898a93a10
test_log_categories
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
348
diff
changeset
|
6220 def test_log_categories(self): |
| 350 | 6221 original = DoGet(_REMOTE, '/tools/log-level-http') |
|
349
698898a93a10
test_log_categories
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
348
diff
changeset
|
6222 |
| 350 | 6223 DoPut(_REMOTE, '/tools/log-level-http', 'default') |
| 6224 self.assertEqual('default', DoGet(_REMOTE, '/tools/log-level-http')) | |
|
349
698898a93a10
test_log_categories
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
348
diff
changeset
|
6225 DoGet(_REMOTE, '/system') |
|
698898a93a10
test_log_categories
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
348
diff
changeset
|
6226 |
| 350 | 6227 DoPut(_REMOTE, '/tools/log-level-http', 'verbose') |
| 6228 self.assertEqual('verbose', DoGet(_REMOTE, '/tools/log-level-http')) | |
|
349
698898a93a10
test_log_categories
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
348
diff
changeset
|
6229 DoGet(_REMOTE, '/system') |
|
698898a93a10
test_log_categories
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
348
diff
changeset
|
6230 |
| 350 | 6231 DoPut(_REMOTE, '/tools/log-level-http', 'trace') |
| 6232 self.assertEqual('trace', DoGet(_REMOTE, '/tools/log-level-http')) | |
|
349
698898a93a10
test_log_categories
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
348
diff
changeset
|
6233 DoGet(_REMOTE, '/system') |
|
698898a93a10
test_log_categories
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
348
diff
changeset
|
6234 |
| 350 | 6235 self.assertRaises(Exception, lambda: DoPut(_REMOTE, '/tools/log-level-http', 'nope')) |
|
349
698898a93a10
test_log_categories
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
348
diff
changeset
|
6236 |
|
698898a93a10
test_log_categories
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
348
diff
changeset
|
6237 # Switch back to the original log level |
| 350 | 6238 DoPut(_REMOTE, '/tools/log-level-http', original) |
| 6239 | |
| 6240 for c in [ 'generic', 'http', 'dicom', 'plugins', 'sqlite', 'lua', 'jobs' ]: | |
|
349
698898a93a10
test_log_categories
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
348
diff
changeset
|
6241 DoPut(_REMOTE, '/tools/log-level-%s' % c, DoGet(_REMOTE, '/tools/log-level-%s' % c)) |
|
698898a93a10
test_log_categories
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
348
diff
changeset
|
6242 |
|
698898a93a10
test_log_categories
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parents:
348
diff
changeset
|
6243 self.assertRaises(Exception, lambda: DoPut(_REMOTE, '/tools/log-level-nope', 'default')) |
| 357 | 6244 |
| 6245 | |
| 6246 def test_upload_zip(self): | |
| 6247 f = StringIO() | |
| 6248 with zipfile.ZipFile(f, 'w') as z: | |
| 6249 z.writestr('hello/world/invalid.txt', 'Hello world') | |
| 6250 with open(GetDatabasePath('DummyCT.dcm'), 'rb') as g: | |
| 6251 c = g.read() | |
| 6252 z.writestr('hello/world/dicom1.dcm', c) | |
| 6253 z.writestr('hello/world/dicom2.dcm', c) | |
| 6254 | |
| 6255 f.seek(0) | |
| 6256 i = DoPost(_REMOTE, '/instances', f.read()) | |
| 6257 | |
| 6258 self.assertEqual(2, len(i)) | |
| 6259 self.assertEqual(i[0], i[1]) | |
| 6260 self.assertEqual(6, len(i[0])) | |
| 6261 self.assertEqual('66a662ce-7430e543-bad44d47-0dc5a943-ec7a538d', i[0]['ID']) | |
| 6262 self.assertEqual('f2635388-f01d497a-15f7c06b-ad7dba06-c4c599fe', i[0]['ParentSeries']) | |
| 6263 self.assertEqual('b9c08539-26f93bde-c81ab0d7-bffaf2cb-a4d0bdd0', i[0]['ParentStudy']) | |
| 6264 self.assertEqual('6816cb19-844d5aee-85245eba-28e841e6-2414fae2', i[0]['ParentPatient']) | |
| 6265 self.assertEqual('/instances/66a662ce-7430e543-bad44d47-0dc5a943-ec7a538d', i[0]['Path']) | |
| 6266 | |
| 6267 # Both are "Success" (instead of one "AlreadyStored"), because "OverwriteInstance" is true | |
| 6268 self.assertEqual('Success', i[0]['Status']) | |
|
361
6cf5cc4d0a99
test_transfer_syntax_no_metaheader
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
359
diff
changeset
|
6269 |
|
6cf5cc4d0a99
test_transfer_syntax_no_metaheader
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
359
diff
changeset
|
6270 |
|
6cf5cc4d0a99
test_transfer_syntax_no_metaheader
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
359
diff
changeset
|
6271 def test_transfer_syntax_no_metaheader(self): |
|
6cf5cc4d0a99
test_transfer_syntax_no_metaheader
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
359
diff
changeset
|
6272 a = UploadInstance(_REMOTE, 'TransferSyntaxes/1.2.840.10008.1.2.dcm')['ID'] |
|
6cf5cc4d0a99
test_transfer_syntax_no_metaheader
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
359
diff
changeset
|
6273 m = DoGet(_REMOTE, '/instances/%s/metadata?expand' % a) |
|
6cf5cc4d0a99
test_transfer_syntax_no_metaheader
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
359
diff
changeset
|
6274 self.assertEqual('1.2.840.10008.5.1.4.1.1.4', m['SopClassUid']) |
|
6cf5cc4d0a99
test_transfer_syntax_no_metaheader
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
359
diff
changeset
|
6275 |
|
6cf5cc4d0a99
test_transfer_syntax_no_metaheader
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
359
diff
changeset
|
6276 # This fails on Orthanc <= 1.8.1 |
|
6cf5cc4d0a99
test_transfer_syntax_no_metaheader
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
359
diff
changeset
|
6277 self.assertTrue('TransferSyntax' in m) |
|
6cf5cc4d0a99
test_transfer_syntax_no_metaheader
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
359
diff
changeset
|
6278 self.assertEqual('1.2.840.10008.1.2', m['TransferSyntax']) |
|
368
2cc40121c3a8
test_upload_multipart_1 and test_upload_multipart_2
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
363
diff
changeset
|
6279 |
|
2cc40121c3a8
test_upload_multipart_1 and test_upload_multipart_2
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
363
diff
changeset
|
6280 |
|
2cc40121c3a8
test_upload_multipart_1 and test_upload_multipart_2
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
363
diff
changeset
|
6281 def test_upload_multipart_1(self): |
|
2cc40121c3a8
test_upload_multipart_1 and test_upload_multipart_2
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
363
diff
changeset
|
6282 # This tests the "Upload" button in Orthanc Explorer |
|
2cc40121c3a8
test_upload_multipart_1 and test_upload_multipart_2
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
363
diff
changeset
|
6283 |
|
2cc40121c3a8
test_upload_multipart_1 and test_upload_multipart_2
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
363
diff
changeset
|
6284 def EncodeChunk(data, boundary, filename): |
|
2cc40121c3a8
test_upload_multipart_1 and test_upload_multipart_2
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
363
diff
changeset
|
6285 return (('--%s\r\n' + |
|
2cc40121c3a8
test_upload_multipart_1 and test_upload_multipart_2
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
363
diff
changeset
|
6286 'Content-Disposition : form-data ; name ="files[]" ; filename = "%s" \r\n' + |
|
2cc40121c3a8
test_upload_multipart_1 and test_upload_multipart_2
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
363
diff
changeset
|
6287 '\r\n%s\r\n') % (boundary, filename, data)) |
|
2cc40121c3a8
test_upload_multipart_1 and test_upload_multipart_2
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
363
diff
changeset
|
6288 |
|
2cc40121c3a8
test_upload_multipart_1 and test_upload_multipart_2
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
363
diff
changeset
|
6289 with open(GetDatabasePath('DummyCT.dcm'), 'rb') as f: |
|
2cc40121c3a8
test_upload_multipart_1 and test_upload_multipart_2
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
363
diff
changeset
|
6290 dcm1 = f.read() |
|
2cc40121c3a8
test_upload_multipart_1 and test_upload_multipart_2
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
363
diff
changeset
|
6291 |
|
2cc40121c3a8
test_upload_multipart_1 and test_upload_multipart_2
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
363
diff
changeset
|
6292 with open(GetDatabasePath('ColorTestMalaterre.dcm'), 'rb') as f: |
|
2cc40121c3a8
test_upload_multipart_1 and test_upload_multipart_2
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
363
diff
changeset
|
6293 dcm2 = f.read() |
|
2cc40121c3a8
test_upload_multipart_1 and test_upload_multipart_2
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
363
diff
changeset
|
6294 |
|
2cc40121c3a8
test_upload_multipart_1 and test_upload_multipart_2
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
363
diff
changeset
|
6295 self.assertEqual(0, len(DoGet(_REMOTE, '/instances'))) |
|
2cc40121c3a8
test_upload_multipart_1 and test_upload_multipart_2
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
363
diff
changeset
|
6296 |
|
2cc40121c3a8
test_upload_multipart_1 and test_upload_multipart_2
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
363
diff
changeset
|
6297 boundary = '----WebKitFormBoundarypJDNQqJPoXiorRmQ' |
|
2cc40121c3a8
test_upload_multipart_1 and test_upload_multipart_2
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
363
diff
changeset
|
6298 m = DoPost(_REMOTE, '/instances', (EncodeChunk(dcm1, boundary, 'DummyCT.dcm') + |
|
2cc40121c3a8
test_upload_multipart_1 and test_upload_multipart_2
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
363
diff
changeset
|
6299 EncodeChunk(dcm2, boundary, 'ColorTestMalaterre.dcm') + |
|
2cc40121c3a8
test_upload_multipart_1 and test_upload_multipart_2
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
363
diff
changeset
|
6300 '--' + boundary + '--'), headers = { |
|
2cc40121c3a8
test_upload_multipart_1 and test_upload_multipart_2
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
363
diff
changeset
|
6301 'Content-Type' : 'multipart/form-data ; boundary = %s ' % boundary, |
|
2cc40121c3a8
test_upload_multipart_1 and test_upload_multipart_2
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
363
diff
changeset
|
6302 'X-Requested-With' : 'XMLHttpRequest', |
|
2cc40121c3a8
test_upload_multipart_1 and test_upload_multipart_2
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
363
diff
changeset
|
6303 }) |
|
2cc40121c3a8
test_upload_multipart_1 and test_upload_multipart_2
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
363
diff
changeset
|
6304 |
|
2cc40121c3a8
test_upload_multipart_1 and test_upload_multipart_2
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
363
diff
changeset
|
6305 self.assertEqual(2, len(DoGet(_REMOTE, '/instances'))) |
|
2cc40121c3a8
test_upload_multipart_1 and test_upload_multipart_2
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
363
diff
changeset
|
6306 |
|
2cc40121c3a8
test_upload_multipart_1 and test_upload_multipart_2
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
363
diff
changeset
|
6307 |
|
2cc40121c3a8
test_upload_multipart_1 and test_upload_multipart_2
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
363
diff
changeset
|
6308 def test_upload_multipart_2(self): |
|
2cc40121c3a8
test_upload_multipart_1 and test_upload_multipart_2
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
363
diff
changeset
|
6309 # This tests the "maxChunkSize" option of "jQuery File Upload |
|
2cc40121c3a8
test_upload_multipart_1 and test_upload_multipart_2
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
363
diff
changeset
|
6310 # 5.12", whose source code can be found in: |
|
2cc40121c3a8
test_upload_multipart_1 and test_upload_multipart_2
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diff
changeset
|
6311 # "OrthancServer/OrthancExplorer/libs/jquery-file-upload/" |
|
2cc40121c3a8
test_upload_multipart_1 and test_upload_multipart_2
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
363
diff
changeset
|
6312 |
|
2cc40121c3a8
test_upload_multipart_1 and test_upload_multipart_2
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
changeset
|
6313 def EncodeBody(data, boundary, filename): |
|
2cc40121c3a8
test_upload_multipart_1 and test_upload_multipart_2
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
changeset
|
6314 return (('--%s\r\n' + |
|
2cc40121c3a8
test_upload_multipart_1 and test_upload_multipart_2
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
363
diff
changeset
|
6315 'Content-Disposition: form-data; name="files[]"; filename="%s"\r\n' + |
|
2cc40121c3a8
test_upload_multipart_1 and test_upload_multipart_2
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363
diff
changeset
|
6316 '\r\n%s\r\n--%s') % (boundary, filename, data, boundary)) |
|
2cc40121c3a8
test_upload_multipart_1 and test_upload_multipart_2
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
363
diff
changeset
|
6317 |
|
2cc40121c3a8
test_upload_multipart_1 and test_upload_multipart_2
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
363
diff
changeset
|
6318 with open(GetDatabasePath('DummyCT.dcm'), 'rb') as f: |
|
2cc40121c3a8
test_upload_multipart_1 and test_upload_multipart_2
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
changeset
|
6319 dcm = f.read() |
|
2cc40121c3a8
test_upload_multipart_1 and test_upload_multipart_2
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
363
diff
changeset
|
6320 |
|
2cc40121c3a8
test_upload_multipart_1 and test_upload_multipart_2
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
363
diff
changeset
|
6321 with open(GetDatabasePath('ColorTestMalaterre.dcm'), 'rb') as f: |
|
2cc40121c3a8
test_upload_multipart_1 and test_upload_multipart_2
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
363
diff
changeset
|
6322 dcm2 = f.read() |
|
2cc40121c3a8
test_upload_multipart_1 and test_upload_multipart_2
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
363
diff
changeset
|
6323 |
|
2cc40121c3a8
test_upload_multipart_1 and test_upload_multipart_2
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
363
diff
changeset
|
6324 boundary = '----WebKitFormBoundarypJDNQqJPoXiorRmQ' |
|
2cc40121c3a8
test_upload_multipart_1 and test_upload_multipart_2
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
363
diff
changeset
|
6325 |
|
2cc40121c3a8
test_upload_multipart_1 and test_upload_multipart_2
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
363
diff
changeset
|
6326 self.assertEqual(0, len(DoGet(_REMOTE, '/instances'))) |
|
2cc40121c3a8
test_upload_multipart_1 and test_upload_multipart_2
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
363
diff
changeset
|
6327 m = DoPost(_REMOTE, '/instances', |
|
2cc40121c3a8
test_upload_multipart_1 and test_upload_multipart_2
Sebastien Jodogne <s.jodogne@gmail.com>
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diff
changeset
|
6328 EncodeBody(dcm[0:1000], boundary, 'DummyCT.dcm'), |
|
2cc40121c3a8
test_upload_multipart_1 and test_upload_multipart_2
Sebastien Jodogne <s.jodogne@gmail.com>
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diff
changeset
|
6329 headers = { |
|
2cc40121c3a8
test_upload_multipart_1 and test_upload_multipart_2
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
changeset
|
6330 'Content-Type' : 'multipart/form-data; boundary=%s' % boundary, |
|
2cc40121c3a8
test_upload_multipart_1 and test_upload_multipart_2
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
363
diff
changeset
|
6331 'X-Requested-With' : 'XMLHttpRequest', |
|
2cc40121c3a8
test_upload_multipart_1 and test_upload_multipart_2
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
363
diff
changeset
|
6332 'X-File-Name' : 'DummyCT.dcm', |
|
2cc40121c3a8
test_upload_multipart_1 and test_upload_multipart_2
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
363
diff
changeset
|
6333 'X-File-Size' : str(len(dcm)), |
|
2cc40121c3a8
test_upload_multipart_1 and test_upload_multipart_2
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
363
diff
changeset
|
6334 }) |
|
2cc40121c3a8
test_upload_multipart_1 and test_upload_multipart_2
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
363
diff
changeset
|
6335 |
|
2cc40121c3a8
test_upload_multipart_1 and test_upload_multipart_2
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
363
diff
changeset
|
6336 self.assertEqual(0, len(DoGet(_REMOTE, '/instances'))) |
|
2cc40121c3a8
test_upload_multipart_1 and test_upload_multipart_2
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
363
diff
changeset
|
6337 m = DoPost(_REMOTE, '/instances', |
|
2cc40121c3a8
test_upload_multipart_1 and test_upload_multipart_2
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
363
diff
changeset
|
6338 EncodeBody(dcm[1000:2000], boundary, 'DummyCT.dcm'), |
|
2cc40121c3a8
test_upload_multipart_1 and test_upload_multipart_2
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
363
diff
changeset
|
6339 headers = { |
|
2cc40121c3a8
test_upload_multipart_1 and test_upload_multipart_2
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
363
diff
changeset
|
6340 'Content-Type' : 'multipart/form-data; boundary=%s' % boundary, |
|
2cc40121c3a8
test_upload_multipart_1 and test_upload_multipart_2
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
363
diff
changeset
|
6341 'X-Requested-With' : 'XMLHttpRequest', |
|
2cc40121c3a8
test_upload_multipart_1 and test_upload_multipart_2
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
363
diff
changeset
|
6342 'X-File-Name' : 'DummyCT.dcm', |
|
2cc40121c3a8
test_upload_multipart_1 and test_upload_multipart_2
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
363
diff
changeset
|
6343 'X-File-Size' : str(len(dcm)), |
|
2cc40121c3a8
test_upload_multipart_1 and test_upload_multipart_2
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
363
diff
changeset
|
6344 }) |
|
2cc40121c3a8
test_upload_multipart_1 and test_upload_multipart_2
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
363
diff
changeset
|
6345 self.assertEqual(0, len(DoGet(_REMOTE, '/instances'))) |
|
2cc40121c3a8
test_upload_multipart_1 and test_upload_multipart_2
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
363
diff
changeset
|
6346 |
|
2cc40121c3a8
test_upload_multipart_1 and test_upload_multipart_2
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
363
diff
changeset
|
6347 m = DoPost(_REMOTE, '/instances', |
|
2cc40121c3a8
test_upload_multipart_1 and test_upload_multipart_2
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
363
diff
changeset
|
6348 EncodeBody(dcm2, boundary, 'ColorTestMalaterre.dcm'), |
|
2cc40121c3a8
test_upload_multipart_1 and test_upload_multipart_2
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
363
diff
changeset
|
6349 headers = { |
|
2cc40121c3a8
test_upload_multipart_1 and test_upload_multipart_2
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
363
diff
changeset
|
6350 'Content-Type' : 'multipart/form-data; boundary=%s' % boundary, |
|
2cc40121c3a8
test_upload_multipart_1 and test_upload_multipart_2
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
363
diff
changeset
|
6351 'X-Requested-With' : 'XMLHttpRequest', |
|
2cc40121c3a8
test_upload_multipart_1 and test_upload_multipart_2
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
363
diff
changeset
|
6352 'X-File-Name' : 'ColorTestMalaterre.dcm', |
|
2cc40121c3a8
test_upload_multipart_1 and test_upload_multipart_2
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
363
diff
changeset
|
6353 'X-File-Size' : str(len(dcm2)), |
|
2cc40121c3a8
test_upload_multipart_1 and test_upload_multipart_2
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
363
diff
changeset
|
6354 }) |
|
2cc40121c3a8
test_upload_multipart_1 and test_upload_multipart_2
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
363
diff
changeset
|
6355 |
|
2cc40121c3a8
test_upload_multipart_1 and test_upload_multipart_2
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
363
diff
changeset
|
6356 self.assertEqual(1, len(DoGet(_REMOTE, '/instances'))) |
|
2cc40121c3a8
test_upload_multipart_1 and test_upload_multipart_2
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
363
diff
changeset
|
6357 |
|
2cc40121c3a8
test_upload_multipart_1 and test_upload_multipart_2
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
363
diff
changeset
|
6358 # Upload the last chunk => the file is now entirely available |
|
2cc40121c3a8
test_upload_multipart_1 and test_upload_multipart_2
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
363
diff
changeset
|
6359 m = DoPost(_REMOTE, '/instances', |
|
2cc40121c3a8
test_upload_multipart_1 and test_upload_multipart_2
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
363
diff
changeset
|
6360 EncodeBody(dcm[2000:len(dcm)], boundary, 'DummyCT.dcm'), |
|
2cc40121c3a8
test_upload_multipart_1 and test_upload_multipart_2
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
363
diff
changeset
|
6361 headers = { |
|
2cc40121c3a8
test_upload_multipart_1 and test_upload_multipart_2
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
363
diff
changeset
|
6362 'Content-Type' : 'multipart/form-data; boundary=%s' % boundary, |
|
2cc40121c3a8
test_upload_multipart_1 and test_upload_multipart_2
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
363
diff
changeset
|
6363 'X-Requested-With' : 'XMLHttpRequest', |
|
2cc40121c3a8
test_upload_multipart_1 and test_upload_multipart_2
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
363
diff
changeset
|
6364 'X-File-Name' : 'DummyCT.dcm', |
|
2cc40121c3a8
test_upload_multipart_1 and test_upload_multipart_2
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
363
diff
changeset
|
6365 'X-File-Size' : str(len(dcm)), |
|
2cc40121c3a8
test_upload_multipart_1 and test_upload_multipart_2
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
363
diff
changeset
|
6366 }) |
|
2cc40121c3a8
test_upload_multipart_1 and test_upload_multipart_2
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
363
diff
changeset
|
6367 |
|
2cc40121c3a8
test_upload_multipart_1 and test_upload_multipart_2
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
363
diff
changeset
|
6368 self.assertEqual(2, len(DoGet(_REMOTE, '/instances'))) |
|
377
cc79fa4945da
test_pixel_data_offset
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
374
diff
changeset
|
6369 |
|
cc79fa4945da
test_pixel_data_offset
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
374
diff
changeset
|
6370 |
|
cc79fa4945da
test_pixel_data_offset
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
374
diff
changeset
|
6371 def test_pixel_data_offset(self): |
|
cc79fa4945da
test_pixel_data_offset
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
374
diff
changeset
|
6372 # New in Orthanc 1.9.1 |
|
cc79fa4945da
test_pixel_data_offset
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
374
diff
changeset
|
6373 def Check(path, offset): |
|
cc79fa4945da
test_pixel_data_offset
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
374
diff
changeset
|
6374 i = UploadInstance(_REMOTE, path) ['ID'] |
|
cc79fa4945da
test_pixel_data_offset
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
374
diff
changeset
|
6375 metadata = DoGetRaw(_REMOTE, '/instances/%s/metadata/PixelDataOffset' % i) [1] |
|
cc79fa4945da
test_pixel_data_offset
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
374
diff
changeset
|
6376 self.assertEqual(offset, metadata) |
|
cc79fa4945da
test_pixel_data_offset
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
374
diff
changeset
|
6377 |
|
cc79fa4945da
test_pixel_data_offset
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
374
diff
changeset
|
6378 Check('ColorTestMalaterre.dcm', str(0x03a0)) |
|
cc79fa4945da
test_pixel_data_offset
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
374
diff
changeset
|
6379 Check('TransferSyntaxes/1.2.840.10008.1.2.1.dcm', str(0x037c)) |
|
cc79fa4945da
test_pixel_data_offset
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
374
diff
changeset
|
6380 Check('TransferSyntaxes/1.2.840.10008.1.2.2.dcm', str(0x03e8)) # Big endian |
|
cc79fa4945da
test_pixel_data_offset
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
374
diff
changeset
|
6381 Check('TransferSyntaxes/1.2.840.10008.1.2.4.50.dcm', str(0x04ac)) |
|
cc79fa4945da
test_pixel_data_offset
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
374
diff
changeset
|
6382 Check('TransferSyntaxes/1.2.840.10008.1.2.4.51.dcm', str(0x072c)) |
|
cc79fa4945da
test_pixel_data_offset
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
374
diff
changeset
|
6383 Check('TransferSyntaxes/1.2.840.10008.1.2.4.57.dcm', str(0x0620)) |
|
cc79fa4945da
test_pixel_data_offset
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
374
diff
changeset
|
6384 Check('TransferSyntaxes/1.2.840.10008.1.2.4.70.dcm', str(0x065a)) |
|
cc79fa4945da
test_pixel_data_offset
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
374
diff
changeset
|
6385 Check('TransferSyntaxes/1.2.840.10008.1.2.4.80.dcm', str(0x0b46)) |
|
cc79fa4945da
test_pixel_data_offset
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
374
diff
changeset
|
6386 Check('TransferSyntaxes/1.2.840.10008.1.2.4.81.dcm', str(0x073e)) |
|
cc79fa4945da
test_pixel_data_offset
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
374
diff
changeset
|
6387 Check('TransferSyntaxes/1.2.840.10008.1.2.4.90.dcm', str(0x0b66)) |
|
cc79fa4945da
test_pixel_data_offset
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
374
diff
changeset
|
6388 Check('TransferSyntaxes/1.2.840.10008.1.2.4.91.dcm', str(0x19b8)) |
|
cc79fa4945da
test_pixel_data_offset
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
374
diff
changeset
|
6389 Check('TransferSyntaxes/1.2.840.10008.1.2.5.dcm', str(0x0b0a)) |
|
cc79fa4945da
test_pixel_data_offset
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
374
diff
changeset
|
6390 Check('TransferSyntaxes/1.2.840.10008.1.2.dcm', '') # No valid DICOM preamble |