Mercurial > hg > orthanc-tests
annotate Tests/Tests.py @ 142:6d2bfbbd0c2d
reorganization
| author | Sebastien Jodogne <s.jodogne@gmail.com> |
|---|---|
| date | Thu, 12 Jul 2018 14:44:37 +0200 |
| parents | 5de178abe4d8 |
| children | 28d50ffac07d |
| rev | line source |
|---|---|
| 22 | 1 #!/usr/bin/env python |
| 2 # -*- coding: utf-8 -*- | |
| 3 | |
| 4 | |
| 3 | 5 # Orthanc - A Lightweight, RESTful DICOM Store |
| 73 | 6 # Copyright (C) 2012-2016 Sebastien Jodogne, Medical Physics |
| 3 | 7 # Department, University Hospital of Liege, Belgium |
|
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8 # Copyright (C) 2017-2018 Osimis S.A., Belgium |
| 3 | 9 # |
| 10 # This program is free software: you can redistribute it and/or | |
| 11 # modify it under the terms of the GNU General Public License as | |
| 12 # published by the Free Software Foundation, either version 3 of the | |
| 13 # License, or (at your option) any later version. | |
| 14 # | |
| 15 # This program is distributed in the hope that it will be useful, but | |
| 16 # WITHOUT ANY WARRANTY; without even the implied warranty of | |
| 17 # MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU | |
| 18 # General Public License for more details. | |
| 19 # | |
| 20 # You should have received a copy of the GNU General Public License | |
| 21 # along with this program. If not, see <http://www.gnu.org/licenses/>. | |
| 22 | |
| 23 | |
| 14 | 24 import tempfile |
| 3 | 25 import unittest |
| 36 | 26 import base64 |
| 3 | 27 |
| 11 | 28 from PIL import ImageChops |
| 3 | 29 from Toolbox import * |
| 13 | 30 from xml.dom import minidom |
| 3 | 31 |
| 32 _LOCAL = None | |
| 33 _REMOTE = None | |
| 34 | |
| 35 | |
| 36 def SetOrthancParameters(local, remote): | |
| 37 global _LOCAL, _REMOTE | |
| 38 _LOCAL = local | |
| 39 _REMOTE = remote | |
| 40 | |
| 41 | |
| 14 | 42 def ExtractDicomTags(rawDicom, tags): |
| 43 with tempfile.NamedTemporaryFile(delete = True) as f: | |
| 44 f.write(rawDicom) | |
| 45 f.flush() | |
| 45 | 46 data = subprocess.check_output([ FindExecutable('dcm2xml'), f.name ]) |
| 14 | 47 |
| 48 result = [] | |
| 49 for tag in tags: | |
| 50 match = re.search('<element[^>]+name="%s">([^>]*)</element>' % tag, data) | |
| 51 if match == None: | |
| 52 result.append('') | |
| 53 else: | |
| 54 result.append(match.group(1)) | |
| 55 | |
| 56 return result | |
| 57 | |
| 58 | |
| 15 | 59 def InstallLuaScript(path): |
| 60 with open(GetDatabasePath(path), 'r') as f: | |
| 61 DoPost(_REMOTE, '/tools/execute-script', f.read(), 'application/lua') | |
| 62 | |
| 63 | |
| 64 def UninstallLuaCallbacks(): | |
| 65 DoPost(_REMOTE, '/tools/execute-script', 'function OnStoredInstance() end', 'application/lua') | |
| 43 | 66 InstallLuaScript('Lua/TransferSyntaxEnable.lua') |
| 15 | 67 |
| 68 | |
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69 def CompareLists(a, b): |
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70 if len(a) != len(b): |
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71 return False |
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72 |
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73 for i in range(len(a)): |
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74 d = a[i] - b[i] |
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75 if abs(d) >= 0.51: # Add some tolerance for rounding errors |
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76 return False |
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77 |
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78 return True |
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79 |
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80 |
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81 def CompareTags(a, b, tagsToIgnore): |
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82 for i in tagsToIgnore: |
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83 if i in a: |
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84 del a[i] |
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85 if i in b: |
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86 del b[i] |
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87 |
| 123 | 88 if a.keys() == b.keys(): |
| 89 return True | |
| 90 else: | |
| 91 print('Mismatch in tags: %s' % str(set(a.keys()) ^ set(b.keys()))) | |
| 92 return False | |
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93 |
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94 |
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95 def CallFindScu(args): |
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96 p = subprocess.Popen([ FindExecutable('findscu'), |
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97 '-P', '-aec', _REMOTE['DicomAet'], '-aet', _LOCAL['DicomAet'], |
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98 _REMOTE['Server'], str(_REMOTE['DicomPort']) ] + args, |
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99 stderr=subprocess.PIPE) |
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100 return p.communicate()[1] |
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101 |
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102 |
| 142 | 103 def GetMoveScuCommand(): |
| 104 return [ | |
| 105 FindExecutable('movescu'), | |
| 106 '--move', _LOCAL['DicomAet'], # Target AET (i.e. storescp) | |
| 107 '--call', _REMOTE['DicomAet'], # Called AET (i.e. Orthanc) | |
| 108 '--aetitle', _LOCAL['DicomAet'], # Calling AET (i.e. storescp) | |
| 109 _REMOTE['Server'], | |
| 110 str(_REMOTE['DicomPort']) | |
| 111 ] | |
| 112 | |
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113 def CallMoveScu(args): |
| 142 | 114 subprocess.check_call(GetMoveScuCommand() + args, |
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115 stderr=subprocess.PIPE) |
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116 |
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117 |
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118 |
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119 def GenerateTestSequence(): |
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120 return [ |
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121 { |
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122 'StudyDescription': 'Hello^', |
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123 'ReferencedStudySequence' : [ |
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124 { |
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125 'StudyDescription': 'Toto', |
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126 }, |
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127 { |
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128 'StudyDescription': 'Tata', |
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129 }, |
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130 ] |
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131 }, |
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132 { |
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133 'StudyDescription': 'Sébastien^', |
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134 'StudyDate' : '19700202', |
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135 } |
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136 ] |
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137 |
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138 |
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139 |
| 15 | 140 |
| 3 | 141 class Orthanc(unittest.TestCase): |
| 142 def setUp(self): | |
| 83 | 143 if (sys.version_info >= (3, 0)): |
| 144 # Remove annoying warnings about unclosed socket in Python 3 | |
| 145 import warnings | |
| 146 warnings.simplefilter("ignore", ResourceWarning) | |
| 147 | |
| 3 | 148 DropOrthanc(_LOCAL) |
| 149 DropOrthanc(_REMOTE) | |
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150 UninstallLuaCallbacks() |
| 45 | 151 #print "In test", self._testMethodName |
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152 |
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153 def AssertSameImages(self, truth, url): |
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154 im = GetImage(_REMOTE, url) |
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155 self.assertTrue(CompareLists(truth, im.getdata())) |
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156 |
| 3 | 157 |
| 158 def test_system(self): | |
| 159 self.assertTrue('Version' in DoGet(_REMOTE, '/system')) | |
| 160 self.assertEqual('0', DoGet(_REMOTE, '/statistics')['TotalDiskSize']) | |
| 161 self.assertEqual('0', DoGet(_REMOTE, '/statistics')['TotalUncompressedSize']) | |
| 162 | |
| 163 def test_upload(self): | |
| 164 u = UploadInstance(_REMOTE, 'DummyCT.dcm') | |
| 165 self.assertEqual('Success', u['Status']) | |
| 166 u = UploadInstance(_REMOTE, 'DummyCT.dcm') | |
| 167 self.assertEqual('AlreadyStored', u['Status']) | |
| 168 self.assertEqual(1, len(DoGet(_REMOTE, '/patients'))) | |
| 169 self.assertEqual(1, len(DoGet(_REMOTE, '/studies'))) | |
| 170 self.assertEqual(1, len(DoGet(_REMOTE, '/series'))) | |
| 171 self.assertEqual(1, len(DoGet(_REMOTE, '/instances'))) | |
| 172 | |
| 173 i = DoGet(_REMOTE, '/instances/%s/simplified-tags' % u['ID']) | |
| 174 self.assertEqual('20070101', i['StudyDate']) | |
| 175 | |
| 176 | |
| 5 | 177 def test_upload_2(self): |
| 3 | 178 i = UploadInstance(_REMOTE, 'DummyCT.dcm')['ID'] |
| 179 instance = DoGet(_REMOTE, '/instances/%s' % i) | |
| 180 self.assertEqual(i, instance['ID']) | |
| 181 self.assertEqual('1.2.840.113619.2.176.2025.1499492.7040.1171286242.109', | |
| 182 instance['MainDicomTags']['SOPInstanceUID']) | |
| 183 | |
| 184 series = DoGet(_REMOTE, '/series/%s' % instance['ParentSeries']) | |
| 185 self.assertEqual('1.2.840.113619.2.176.2025.1499492.7391.1171285944.394', | |
| 186 series['MainDicomTags']['SeriesInstanceUID']) | |
| 187 | |
| 188 study = DoGet(_REMOTE, '/studies/%s' % series['ParentStudy']) | |
| 189 self.assertEqual('1.2.840.113619.2.176.2025.1499492.7391.1171285944.390', | |
| 190 study['MainDicomTags']['StudyInstanceUID']) | |
| 191 | |
| 192 patient = DoGet(_REMOTE, '/patients/%s' % study['ParentPatient']) | |
| 193 self.assertEqual('ozp00SjY2xG', | |
| 194 patient['MainDicomTags']['PatientID']) | |
| 195 | |
| 196 dicom = DoGet(_REMOTE, '/instances/%s/file' % instance['ID']) | |
| 197 self.assertEqual(2472, len(dicom)) | |
| 198 self.assertEqual('3e29b869978b6db4886355a2b1132124', ComputeMD5(dicom)) | |
| 199 self.assertEqual(1, len(DoGet(_REMOTE, '/instances/%s/frames' % i))) | |
| 200 self.assertEqual('TWINOW', DoGet(_REMOTE, '/instances/%s/simplified-tags' % i)['StationName']) | |
| 201 self.assertEqual('TWINOW', DoGet(_REMOTE, '/instances/%s/tags' % i)['0008,1010']['Value']) | |
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202 self.assertEqual('TWINOW', DoGet(_REMOTE, '/instances/%s/tags?simplify' % i)['StationName']) |
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203 self.assertEqual('TWINOW', DoGet(_REMOTE, '/instances/%s/tags?short' % i)['0008,1010']) |
| 3 | 204 |
| 205 | |
| 5 | 206 def test_images(self): |
| 207 i = UploadInstance(_REMOTE, 'Phenix/IM-0001-0001.dcm')['ID'] | |
| 208 self.assertEqual(1, len(DoGet(_REMOTE, '/instances/%s/frames' % i))) | |
| 3 | 209 |
| 5 | 210 im = GetImage(_REMOTE, '/instances/%s/preview' % i) |
| 211 self.assertEqual("L", im.mode) | |
| 212 self.assertEqual(512, im.size[0]) | |
| 213 self.assertEqual(358, im.size[1]) | |
| 214 | |
| 215 im = GetImage(_REMOTE, '/instances/%s/image-uint8' % i) | |
| 216 self.assertEqual("L", im.mode) | |
| 217 self.assertEqual(512, im.size[0]) | |
| 218 self.assertEqual(358, im.size[1]) | |
| 219 | |
| 220 im = GetImage(_REMOTE, '/instances/%s/image-uint16' % i) | |
| 221 self.assertEqual(512, im.size[0]) | |
| 222 self.assertEqual(358, im.size[1]) | |
| 223 | |
| 224 im = GetImage(_REMOTE, '/instances/%s/frames/0/preview' % i) | |
| 225 self.assertEqual("L", im.mode) | |
| 226 self.assertEqual(512, im.size[0]) | |
| 227 self.assertEqual(358, im.size[1]) | |
| 228 | |
| 229 im = GetImage(_REMOTE, '/instances/%s/frames/0/image-uint8' % i) | |
| 230 self.assertEqual("L", im.mode) | |
| 231 self.assertEqual(512, im.size[0]) | |
| 232 self.assertEqual(358, im.size[1]) | |
| 233 | |
| 234 im = GetImage(_REMOTE, '/instances/%s/frames/0/image-uint16' % i) | |
| 235 self.assertEqual(512, im.size[0]) | |
| 236 self.assertEqual(358, im.size[1]) | |
| 64 | 237 |
| 238 # This is Little Endian Explicit | |
| 239 self.assertEqual('1.2.840.10008.1.2.1', DoGet(_REMOTE, '/instances/%s/header?simplify' % i)['TransferSyntaxUID']) | |
| 240 | |
| 6 | 241 |
| 242 def test_hierarchy(self): | |
| 243 UploadFolder(_REMOTE, 'Brainix/Epi') | |
| 244 UploadFolder(_REMOTE, 'Brainix/Flair') | |
| 245 UploadFolder(_REMOTE, 'Knee/T1') | |
| 246 UploadFolder(_REMOTE, 'Knee/T2') | |
| 247 | |
| 248 p = DoGet(_REMOTE, '/patients') | |
| 249 s = DoGet(_REMOTE, '/studies') | |
| 250 t = DoGet(_REMOTE, '/series') | |
| 251 self.assertEqual(2, len(p)) | |
| 252 self.assertEqual(2, len(s)) | |
| 253 self.assertEqual(4, len(t)) | |
| 254 self.assertEqual(94, len(DoGet(_REMOTE, '/instances'))) | |
| 255 | |
| 256 brainixPatient = '16738bc3-e47ed42a-43ce044c-a3414a45-cb069bd0' | |
| 257 brainixStudy = '27f7126f-4f66fb14-03f4081b-f9341db2-53925988' | |
| 258 brainixEpi = '2ac1316d-3e432022-62eabff2-c59f5475-9b1ac3f8' | |
| 259 brainixFlair = '1e2c125c-411b8e86-3f4fe68e-a7584dd3-c6da78f0' | |
| 260 | |
| 261 kneePatient = 'ca29faea-b6a0e17f-067743a1-8b778011-a48b2a17' | |
| 262 kneeStudy = '0a9b3153-2512774b-2d9580de-1fc3dcf6-3bd83918' | |
| 263 kneeT1 = '6de73705-c4e65c1b-9d9ea1b5-cabcd8e7-f15e4285' | |
| 264 kneeT2 = 'bbf7a453-0d34251a-03663b55-46bb31b9-ffd74c59' | |
| 265 | |
| 266 self.assertTrue(brainixPatient in p) | |
| 267 self.assertTrue(kneePatient in p) | |
| 268 self.assertTrue(brainixStudy in s) | |
| 269 self.assertTrue(kneeStudy in s) | |
| 270 self.assertTrue(brainixEpi in t) | |
| 271 self.assertTrue(brainixFlair in t) | |
| 272 self.assertTrue(kneeT1 in t) | |
| 273 self.assertTrue(kneeT2 in t) | |
| 274 | |
| 275 self.assertEqual(44, len(DoGet(_REMOTE, '/patients/%s/instances' % brainixPatient))) | |
| 276 self.assertEqual(2, len(DoGet(_REMOTE, '/patients/%s/series' % brainixPatient))) | |
| 277 self.assertEqual(1, len(DoGet(_REMOTE, '/patients/%s/studies' % brainixPatient))) | |
| 278 | |
| 279 self.assertEqual(50, len(DoGet(_REMOTE, '/patients/%s/instances' % kneePatient))) | |
| 280 self.assertEqual(2, len(DoGet(_REMOTE, '/patients/%s/series' % kneePatient))) | |
| 281 self.assertEqual(1, len(DoGet(_REMOTE, '/patients/%s/studies' % kneePatient))) | |
| 282 | |
| 283 self.assertEqual(2, len(DoGet(_REMOTE, '/studies/%s/series' % brainixStudy))) | |
| 284 self.assertEqual(44, len(DoGet(_REMOTE, '/studies/%s/instances' % brainixStudy))) | |
| 285 | |
| 286 self.assertEqual(2, len(DoGet(_REMOTE, '/studies/%s/series' % kneeStudy))) | |
| 287 self.assertEqual(50, len(DoGet(_REMOTE, '/studies/%s/instances' % kneeStudy))) | |
| 288 | |
| 289 self.assertEqual(22, len(DoGet(_REMOTE, '/series/%s/instances' % brainixEpi))) | |
| 290 self.assertEqual(22, len(DoGet(_REMOTE, '/series/%s/instances' % brainixFlair))) | |
| 291 self.assertEqual(24, len(DoGet(_REMOTE, '/series/%s/instances' % kneeT1))) | |
| 292 self.assertEqual(26, len(DoGet(_REMOTE, '/series/%s/instances' % kneeT2))) | |
| 293 | |
| 294 for patient in p: | |
| 295 for study in DoGet(_REMOTE, '/patients/%s/studies' % patient): | |
| 296 self.assertEqual(patient, study['ParentPatient']) | |
| 297 for series in DoGet(_REMOTE, '/studies/%s/series' % study['ID']): | |
| 298 self.assertEqual(study['ID'], series['ParentStudy']) | |
| 299 for instance in DoGet(_REMOTE, '/series/%s/instances' % series['ID']): | |
| 300 self.assertEqual(series['ID'], instance['ParentSeries']) | |
| 301 | |
| 302 self.assertEqual(json.dumps(DoGet(_REMOTE, '/instances/%s/attachments/dicom-as-json/data' % instance['ID'])), | |
| 303 json.dumps(DoGet(_REMOTE, '/instances/%s/tags' % instance['ID']))) | |
| 304 | |
| 305 | |
| 306 r = DoDelete(_REMOTE, "/studies/%s" % brainixStudy)['RemainingAncestor'] | |
| 307 self.assertEqual(1, len(DoGet(_REMOTE, '/patients'))) | |
| 308 self.assertEqual(1, len(DoGet(_REMOTE, '/studies'))) | |
| 309 self.assertEqual(2, len(DoGet(_REMOTE, '/series'))) | |
| 310 self.assertEqual(50, len(DoGet(_REMOTE, '/instances'))) | |
| 311 self.assertEqual(None, r) | |
| 312 | |
| 313 r = DoDelete(_REMOTE, "/series/%s" % kneeT2)['RemainingAncestor'] | |
| 314 self.assertEqual(1, len(DoGet(_REMOTE, '/patients'))) | |
| 315 self.assertEqual(1, len(DoGet(_REMOTE, '/studies'))) | |
| 316 self.assertEqual(1, len(DoGet(_REMOTE, '/series'))) | |
| 317 self.assertEqual(24, len(DoGet(_REMOTE, '/instances'))) | |
| 318 self.assertEqual('Study', r['Type']) | |
| 319 self.assertEqual(kneeStudy, r['ID']) | |
| 320 | |
| 321 r = DoDelete(_REMOTE, "/instances/%s" % DoGet(_REMOTE, '/instances')[0])['RemainingAncestor'] | |
| 322 self.assertEqual(1, len(DoGet(_REMOTE, '/patients'))) | |
| 323 self.assertEqual(1, len(DoGet(_REMOTE, '/studies'))) | |
| 324 self.assertEqual(1, len(DoGet(_REMOTE, '/series'))) | |
| 325 self.assertEqual(23, len(DoGet(_REMOTE, '/instances'))) | |
| 326 self.assertEqual('Series', r['Type']) | |
| 327 self.assertEqual(kneeT1, r['ID']) | |
| 328 | |
| 329 r = DoDelete(_REMOTE, "/patients/%s" % kneePatient)['RemainingAncestor'] | |
| 330 self.assertEqual(0, len(DoGet(_REMOTE, '/patients'))) | |
| 331 self.assertEqual(0, len(DoGet(_REMOTE, '/studies'))) | |
| 332 self.assertEqual(0, len(DoGet(_REMOTE, '/series'))) | |
| 333 self.assertEqual(0, len(DoGet(_REMOTE, '/instances'))) | |
| 334 self.assertEqual(None, r) | |
| 335 | |
| 336 DropOrthanc(_REMOTE) | |
| 337 self.assertEqual('0', DoGet(_REMOTE, '/statistics')['TotalDiskSize']) | |
| 338 self.assertEqual('0', DoGet(_REMOTE, '/statistics')['TotalUncompressedSize']) | |
| 7 | 339 |
| 340 | |
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341 def test_multiframe(self): |
| 7 | 342 i = UploadInstance(_REMOTE, 'Multiframe.dcm')['ID'] |
| 343 self.assertEqual(76, len(DoGet(_REMOTE, '/instances/%s/frames' % i))) | |
| 344 | |
| 345 im = GetImage(_REMOTE, '/instances/%s/frames/0/preview' % i) | |
| 346 self.assertEqual("L", im.mode) | |
| 347 self.assertEqual(512, im.size[0]) | |
| 348 self.assertEqual(512, im.size[1]) | |
| 349 | |
| 350 DoGet(_REMOTE, '/instances/%s/frames/0/image-uint8' % i) | |
| 351 DoGet(_REMOTE, '/instances/%s/frames/0/image-uint16' % i) | |
| 352 DoGet(_REMOTE, '/instances/%s/frames/75/preview' % i) | |
| 353 self.assertRaises(Exception, lambda: DoGet(_REMOTE, '/instances/%s/frames/aaa/preview' % i)) | |
| 354 self.assertRaises(Exception, lambda: DoGet(_REMOTE, '/instances/%s/frames/76/preview' % i)) | |
| 355 | |
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356 |
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357 def test_changes(self): |
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358 # Check emptiness |
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359 c = DoGet(_REMOTE, '/changes') |
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360 self.assertEqual(0, len(c['Changes'])) |
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361 self.assertEqual(0, c['Last']) |
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362 self.assertTrue(c['Done']) |
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363 c = DoGet(_REMOTE, '/changes?last') |
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364 self.assertEqual(0, len(c['Changes'])) |
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365 self.assertEqual(0, c['Last']) |
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366 self.assertTrue(c['Done']) |
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367 |
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368 # Add 1 instance |
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369 i = UploadInstance(_REMOTE, 'Brainix/Flair/IM-0001-0001.dcm')['ID'] |
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370 c = DoGet(_REMOTE, '/changes') |
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371 begin = c['Last'] |
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372 self.assertEqual(4, len(c['Changes'])) |
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373 self.assertTrue(c['Done']) |
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374 self.assertEqual(c['Changes'][-1]['Seq'], c['Last']) |
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375 |
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376 c = DoGet(_REMOTE, '/changes?last') |
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377 self.assertEqual(1, len(c['Changes'])) |
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378 self.assertEqual(begin, c['Last']) |
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379 self.assertTrue(c['Done']) |
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380 c = DoGet(_REMOTE, '/changes?limit=1&since=' + str(begin - 1)) |
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381 self.assertEqual(1, len(c['Changes'])) |
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382 self.assertEqual(begin, c['Last']) |
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383 self.assertTrue(c['Done']) |
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384 c = DoGet(_REMOTE, '/changes?limit=1&since=' + str(begin - 2)) |
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385 self.assertEqual(1, len(c['Changes'])) |
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386 self.assertEqual(begin - 1, c['Last']) |
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387 self.assertFalse(c['Done']) |
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388 c = DoGet(_REMOTE, '/changes?limit=1&since=' + str(begin - 3)) |
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389 self.assertEqual(1, len(c['Changes'])) |
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390 self.assertEqual(begin - 2, c['Last']) |
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391 self.assertFalse(c['Done']) |
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392 |
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393 UploadFolder(_REMOTE, 'Knee/T1') |
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394 UploadFolder(_REMOTE, 'Knee/T2') |
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395 since = begin |
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396 countPatients = 0 |
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397 countStudies = 0 |
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398 countSeries = 0 |
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399 countInstances = 0 |
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400 completed = 0 |
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401 while True: |
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402 c = DoGet(_REMOTE, '/changes', { 'since' : since, 'limit' : 3 }) |
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403 since = c['Last'] |
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404 for i in c['Changes']: |
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405 if i['ResourceType'] == 'Instance': |
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406 countInstances += 1 |
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407 if i['ResourceType'] == 'Patient': |
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408 countPatients += 1 |
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409 if i['ResourceType'] == 'Study': |
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410 countStudies += 1 |
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411 if i['ResourceType'] == 'Series': |
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412 countSeries += 1 |
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413 if i['ChangeType'] == 'NewInstance': |
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414 countInstances += 1 |
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415 if i['ChangeType'] == 'NewPatient': |
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416 countPatients += 1 |
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417 if i['ChangeType'] == 'NewStudy': |
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418 countStudies += 1 |
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419 if i['ChangeType'] == 'NewSeries': |
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420 countSeries += 1 |
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421 if i['ChangeType'] == 'CompletedSeries': |
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422 completed += 1 |
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423 self.assertTrue('ID' in i) |
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424 self.assertTrue('Path' in i) |
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425 self.assertTrue('Seq' in i) |
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426 if c['Done']: |
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427 break |
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428 |
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429 self.assertEqual(2 * 50, countInstances) |
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430 self.assertEqual(2 * 1, countPatients) |
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431 self.assertEqual(2 * 1, countStudies) |
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432 self.assertEqual(2 * 2, countSeries) |
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433 self.assertEqual(0, completed) |
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434 |
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435 |
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436 def test_archive(self): |
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437 UploadInstance(_REMOTE, 'Knee/T1/IM-0001-0001.dcm') |
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438 UploadInstance(_REMOTE, 'Knee/T2/IM-0001-0001.dcm') |
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439 |
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440 z = GetArchive(_REMOTE, '/patients/%s/archive' % DoGet(_REMOTE, '/patients')[0]) |
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441 self.assertEqual(2, len(z.namelist())) |
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442 |
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443 z = GetArchive(_REMOTE, '/studies/%s/archive' % DoGet(_REMOTE, '/studies')[0]) |
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444 self.assertEqual(2, len(z.namelist())) |
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445 |
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446 z = GetArchive(_REMOTE, '/series/%s/archive' % DoGet(_REMOTE, '/series')[0]) |
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447 self.assertEqual(1, len(z.namelist())) |
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448 |
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449 UploadInstance(_REMOTE, 'Brainix/Flair/IM-0001-0001.dcm') |
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450 |
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451 z = GetArchive(_REMOTE, '/patients/%s/archive' % DoGet(_REMOTE, '/patients')[0]) |
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452 self.assertEqual(2, len(z.namelist())) |
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453 |
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454 |
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455 def test_media_archive(self): |
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456 UploadInstance(_REMOTE, 'Knee/T1/IM-0001-0001.dcm') |
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457 UploadInstance(_REMOTE, 'Knee/T2/IM-0001-0001.dcm') |
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458 |
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459 z = GetArchive(_REMOTE, '/patients/%s/media' % DoGet(_REMOTE, '/patients')[0]) |
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460 self.assertEqual(3, len(z.namelist())) |
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461 self.assertTrue('IMAGES/IM0' in z.namelist()) |
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462 self.assertTrue('IMAGES/IM1' in z.namelist()) |
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463 self.assertTrue('DICOMDIR' in z.namelist()) |
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464 |
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465 try: |
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466 os.remove('/tmp/DICOMDIR') |
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467 except: |
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468 # The file does not exist |
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469 pass |
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470 |
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471 z.extract('DICOMDIR', '/tmp') |
| 45 | 472 a = subprocess.check_output([ FindExecutable('dciodvfy'), '/tmp/DICOMDIR' ], |
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473 stderr = subprocess.STDOUT).split('\n') |
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474 self.assertEqual(3, len(a)) |
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475 self.assertTrue(a[0].startswith('Warning')) |
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476 self.assertEqual('BasicDirectory', a[1]) |
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477 self.assertEqual('', a[2]) |
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478 |
| 45 | 479 a = subprocess.check_output([ FindExecutable('dcentvfy'), '/tmp/DICOMDIR' ], |
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480 stderr = subprocess.STDOUT).split('\n') |
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481 self.assertEqual(1, len(a)) |
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482 self.assertEqual('', a[0]) |
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483 |
| 45 | 484 a = subprocess.check_output([ FindExecutable('dcm2xml'), '/tmp/DICOMDIR' ]) |
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485 self.assertTrue(re.search('1.3.46.670589.11.17521.5.0.3124.2008081908590448738', a) != None) |
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486 self.assertTrue(re.search('1.3.46.670589.11.17521.5.0.3124.2008081909113806560', a) != None) |
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487 |
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488 os.remove('/tmp/DICOMDIR') |
| 10 | 489 |
| 490 | |
| 491 def test_protection(self): | |
| 492 UploadInstance(_REMOTE, 'Knee/T1/IM-0001-0001.dcm') | |
| 493 UploadInstance(_REMOTE, 'Brainix/Flair/IM-0001-0001.dcm') | |
| 494 self.assertEqual(2, len(DoGet(_REMOTE, '/patients'))) | |
| 495 a = DoGet(_REMOTE, '/patients')[0] | |
| 496 b = DoGet(_REMOTE, '/patients')[1] | |
| 497 self.assertEqual(0, DoGet(_REMOTE, '/patients/%s/protected' % a)) | |
| 498 DoPut(_REMOTE, '/patients/%s/protected' % a, '0', 'text/plain') | |
| 499 self.assertEqual(0, DoGet(_REMOTE, '/patients/%s/protected' % a)) | |
| 500 DoPut(_REMOTE, '/patients/%s/protected' % a, '1', 'text/plain') | |
| 501 self.assertEqual(1, DoGet(_REMOTE, '/patients/%s/protected' % a)) | |
| 502 DoPut(_REMOTE, '/patients/%s/protected' % a, '0', 'text/plain') | |
| 503 self.assertEqual(0, DoGet(_REMOTE, '/patients/%s/protected' % a)) | |
| 504 | |
| 505 | |
| 12 | 506 def test_raw_tags(self): |
| 10 | 507 i = UploadInstance(_REMOTE, 'PrivateTags.dcm')['ID'] |
| 508 | |
| 509 dicom = DoGet(_REMOTE, '/instances/%s/file' % i) | |
| 510 self.assertEqual('1a7c56cb02d6e742cc9c856a8ac182e3', ComputeMD5(dicom)) | |
| 511 | |
| 512 s = '/instances/%s/content/' % i | |
| 513 | |
| 514 self.assertEqual('LOGIQBOOK', DoGet(_REMOTE, s + '0008-1010').strip()) | |
| 515 self.assertRaises(Exception, lambda: DoGet(_REMOTE, s + '0008-1011')) | |
| 516 | |
| 517 self.assertEqual('Abdomen', DoGet(_REMOTE, s + '7fe1-1001/0/7fe1-1008/0/7fe1-1057').strip()) | |
| 518 self.assertEqual('cla_3c', DoGet(_REMOTE, s + '7fe1-1001/0/7fe1-1008/8/7fe1-1057').strip()) | |
| 519 | |
| 520 UploadInstance(_REMOTE, 'Brainix/Epi/IM-0001-0001.dcm') | |
| 521 UploadInstance(_REMOTE, 'Brainix/Flair/IM-0001-0001.dcm') | |
| 522 UploadInstance(_REMOTE, 'Knee/T1/IM-0001-0001.dcm') | |
| 523 UploadInstance(_REMOTE, 'Knee/T2/IM-0001-0001.dcm') | |
| 524 | |
| 525 for i in DoGet(_REMOTE, '/instances'): | |
| 526 aid = DoGet(_REMOTE, '/instances/%s' % i)['MainDicomTags']['SOPInstanceUID'] | |
| 527 self.assertEqual(aid, DoGet(_REMOTE, '/instances/%s/content/0008-0018' % i).replace(chr(0), '')) | |
| 528 | |
| 529 | |
| 530 def test_raw_tags_mdn(self): | |
| 531 # Bug reported by Cyril Paulus | |
| 532 i = UploadInstance(_REMOTE, 'PrivateMDNTags.dcm')['ID'] | |
| 533 self.assertAlmostEqual(0.000027, DoGet(_REMOTE, '/instances/%s/content/7053-1000' % i)) | |
| 534 | |
| 535 | |
| 536 def test_modify_instance(self): | |
| 537 i = UploadInstance(_REMOTE, 'PrivateTags.dcm')['ID'] | |
| 538 modified = DoPost(_REMOTE, '/instances/%s/modify' % i, | |
| 539 json.dumps({ | |
| 540 "Replace" : { | |
| 541 "PatientName" : "hello", | |
| 542 #"PatientID" : "world" | |
| 543 }, | |
| 544 "Remove" : [ "StationName" ], | |
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545 "RemovePrivateTags" : True |
| 10 | 546 }), |
| 547 'application/json') | |
| 548 j = DoPost(_REMOTE, '/instances', modified, 'application/dicom')['ID'] | |
| 549 | |
| 550 self.assertNotEqual('hello', DoGet(_REMOTE, '/instances/%s/content/0010-0010' % i).strip()) | |
| 551 #self.assertNotEqual('world', DoGet(_REMOTE, '/instances/%s/content/0010-0020' % i).strip()) | |
| 83 | 552 self.assertEqual('LOGIQBOOK', DoGet(_REMOTE, '/instances/%s/content/0008-1010' % i).strip()) |
| 10 | 553 DoGet(_REMOTE, '/instances/%s/content/6003-1010' % i) # Some private tag |
| 554 | |
| 555 self.assertEqual('hello', DoGet(_REMOTE, '/instances/%s/content/0010-0010' % j).strip()) | |
| 556 #self.assertEqual('world', DoGet(_REMOTE, '/instances/%s/content/0010-0020' % j).strip()) | |
| 557 self.assertRaises(Exception, lambda: DoGet(_REMOTE, '/instances/%s/content/0008-1010' % j)) | |
| 558 self.assertRaises(Exception, lambda: DoGet(_REMOTE, '/instances/%s/content/6003-1010' % j)) | |
| 559 | |
| 560 | |
| 561 def test_modify_series(self): | |
| 562 # Upload 4 images from the same series | |
| 563 for i in range(4): | |
| 564 UploadInstance(_REMOTE, 'Brainix/Epi/IM-0001-000%d.dcm' % (i + 1)) | |
| 565 | |
| 566 origSeries = DoGet(_REMOTE, '/series')[0] | |
| 567 newSeries = DoPost(_REMOTE, '/series/%s/modify' % origSeries, | |
| 568 '{"Replace":{"PatientName":"Jodogne"}}', | |
| 569 'application/json')['ID'] | |
| 570 | |
| 571 self.assertEqual(origSeries, DoGet(_REMOTE, '/series/%s' % newSeries)['ModifiedFrom']) | |
| 572 instances = DoGet(_REMOTE, '/series/%s' % newSeries)['Instances'] | |
| 573 self.assertEqual(4, len(instances)) | |
| 574 for i in instances: | |
| 575 j = DoGet(_REMOTE, '/instances/%s' % i)['ModifiedFrom'] | |
| 576 self.assertEqual(newSeries, DoGet(_REMOTE, '/instances/%s' % i)['ParentSeries']) | |
| 577 self.assertEqual(origSeries, DoGet(_REMOTE, '/instances/%s' % j)['ParentSeries']) | |
| 578 | |
| 579 self.assertEqual('Jodogne', DoGet(_REMOTE, '/instances/%s/content/0010-0010' % i).strip()) | |
| 580 self.assertNotEqual('Jodogne', DoGet(_REMOTE, '/instances/%s/content/0010-0010' % j).strip()) | |
| 581 | |
| 582 | |
| 583 def test_modify_study(self): | |
| 584 # Upload 4 images from the 2 series of the same study | |
| 585 for i in range(4): | |
| 586 UploadInstance(_REMOTE, 'Brainix/Flair/IM-0001-000%d.dcm' % (i + 1)) | |
| 587 UploadInstance(_REMOTE, 'Brainix/Epi/IM-0001-000%d.dcm' % (i + 1)) | |
| 588 | |
| 589 origStudy = DoGet(_REMOTE, '/studies')[0] | |
| 590 newStudy = DoPost(_REMOTE, '/studies/%s/modify' % origStudy, | |
| 591 '{"Replace":{"PatientName":"Jodogne"}}', | |
| 592 'application/json')['ID'] | |
| 593 | |
| 594 self.assertEqual(origStudy, DoGet(_REMOTE, '/studies/%s' % newStudy)['ModifiedFrom']) | |
| 595 series = DoGet(_REMOTE, '/studies/%s' % newStudy)['Series'] | |
| 596 self.assertEqual(2, len(series)) | |
| 597 for s in series: | |
| 598 ss = DoGet(_REMOTE, '/series/%s' % s)['ModifiedFrom'] | |
| 599 self.assertEqual(newStudy, DoGet(_REMOTE, '/series/%s' % s)['ParentStudy']) | |
| 600 self.assertEqual(origStudy, DoGet(_REMOTE, '/series/%s' % ss)['ParentStudy']) | |
| 601 | |
| 602 instances = DoGet(_REMOTE, '/series/%s' % s)['Instances'] | |
| 603 for i in instances: | |
| 604 j = DoGet(_REMOTE, '/instances/%s' % i)['ModifiedFrom'] | |
| 605 self.assertEqual(s, DoGet(_REMOTE, '/instances/%s' % i)['ParentSeries']) | |
| 606 self.assertEqual(ss, DoGet(_REMOTE, '/instances/%s' % j)['ParentSeries']) | |
| 607 | |
| 608 self.assertEqual('Jodogne', DoGet(_REMOTE, '/instances/%s/content/0010-0010' % i).strip()) | |
| 609 self.assertNotEqual('Jodogne', DoGet(_REMOTE, '/instances/%s/content/0010-0010' % j).strip()) | |
| 610 | |
| 611 | |
| 612 def test_anonymize_series(self): | |
| 613 # Upload 4 images from the same series | |
| 614 for i in range(4): | |
| 615 UploadInstance(_REMOTE, 'Brainix/Epi/IM-0001-000%d.dcm' % (i + 1)) | |
| 616 | |
| 617 origSeries = DoGet(_REMOTE, '/series')[0] | |
| 618 newSeries = DoPost(_REMOTE, '/series/%s/anonymize' % origSeries, | |
| 619 '{}', | |
| 620 'application/json')['ID'] | |
| 621 | |
| 622 self.assertEqual(origSeries, DoGet(_REMOTE, '/series/%s' % newSeries)['AnonymizedFrom']) | |
| 623 instances = DoGet(_REMOTE, '/series/%s' % newSeries)['Instances'] | |
| 624 self.assertEqual(4, len(instances)) | |
| 625 for i in instances: | |
| 626 j = DoGet(_REMOTE, '/instances/%s' % i)['AnonymizedFrom'] | |
| 627 self.assertEqual(newSeries, DoGet(_REMOTE, '/instances/%s' % i)['ParentSeries']) | |
| 628 self.assertEqual(origSeries, DoGet(_REMOTE, '/instances/%s' % j)['ParentSeries']) | |
| 629 | |
| 630 DoGet(_REMOTE, '/instances/%s/content/0008-1010' % j) | |
| 631 self.assertRaises(Exception, lambda: DoGet(_REMOTE, '/instances/%s/content/0008-1010' % i)) | |
| 632 | |
| 633 | |
| 634 def test_anonymize_study(self): | |
| 635 # Upload 4 images from the 2 series of the same study | |
| 636 for i in range(4): | |
| 637 UploadInstance(_REMOTE, 'Brainix/Flair/IM-0001-000%d.dcm' % (i + 1)) | |
| 638 UploadInstance(_REMOTE, 'Brainix/Epi/IM-0001-000%d.dcm' % (i + 1)) | |
| 639 | |
| 640 origStudy = DoGet(_REMOTE, '/studies')[0] | |
| 641 newStudy = DoPost(_REMOTE,'/studies/%s/anonymize' % origStudy, | |
| 642 '{"Replace":{"PatientName":"Jodogne"}}', | |
| 643 'application/json')['ID'] | |
| 644 | |
| 645 self.assertEqual(origStudy, DoGet(_REMOTE, '/studies/%s' % newStudy)['AnonymizedFrom']) | |
| 646 series = DoGet(_REMOTE, '/studies/%s' % newStudy)['Series'] | |
| 647 self.assertEqual(2, len(series)) | |
| 648 for s in series: | |
| 649 ss = DoGet(_REMOTE, '/series/%s' % s)['AnonymizedFrom'] | |
| 650 self.assertEqual(newStudy, DoGet(_REMOTE, '/series/%s' % s)['ParentStudy']) | |
| 651 self.assertEqual(origStudy, DoGet(_REMOTE, '/series/%s' % ss)['ParentStudy']) | |
| 652 | |
| 653 instances = DoGet(_REMOTE, '/series/%s' % s)['Instances'] | |
| 654 for i in instances: | |
| 655 j = DoGet(_REMOTE, '/instances/%s' % i)['AnonymizedFrom'] | |
| 656 self.assertEqual(s, DoGet(_REMOTE, '/instances/%s' % i)['ParentSeries']) | |
| 657 self.assertEqual(ss, DoGet(_REMOTE, '/instances/%s' % j)['ParentSeries']) | |
| 658 | |
| 659 self.assertEqual('Jodogne', DoGet(_REMOTE, '/instances/%s/content/0010-0010' % i).strip()) | |
| 660 self.assertNotEqual('Jodogne', DoGet(_REMOTE, '/instances/%s/content/0010-0010' % j).strip()) | |
| 11 | 661 |
| 662 | |
| 663 | |
| 664 def test_storescu(self): | |
| 665 # Check emptiness | |
| 666 e = DoGet(_REMOTE, '/exports') | |
| 667 self.assertEqual(0, len(e['Exports'])) | |
| 668 self.assertEqual(0, e['Last']) | |
| 669 self.assertTrue(e['Done']) | |
| 670 e = DoGet(_REMOTE, '/exports?last') | |
| 671 self.assertEqual(0, len(e['Exports'])) | |
| 672 self.assertEqual(0, e['Last']) | |
| 673 self.assertTrue(e['Done']) | |
| 674 | |
| 675 # Add 1 instance | |
| 676 i = UploadInstance(_REMOTE, 'DummyCT.dcm')['ID'] | |
| 677 self.assertEqual(0, len(DoGet(_LOCAL, '/patients'))) | |
| 678 | |
| 679 # Export the instance | |
| 680 j = DoPost(_REMOTE, '/modalities/orthanctest/store', str(i), 'text/plain') # instance | |
| 681 self.assertEqual(1, len(DoGet(_LOCAL, '/patients'))) | |
| 682 self.assertEqual(1, len(DoGet(_LOCAL, '/studies'))) | |
| 683 self.assertEqual(1, len(DoGet(_LOCAL, '/series'))) | |
| 684 self.assertEqual(1, len(DoGet(_LOCAL, '/instances'))) | |
| 685 | |
| 686 e = DoGet(_REMOTE, '/exports') | |
| 687 self.assertEqual(1, len(e['Exports'])) | |
| 688 self.assertTrue(e['Done']) | |
| 689 self.assertEqual(e['Exports'][-1]['Seq'], e['Last']) | |
| 690 e = DoGet(_REMOTE, '/exports?limit=1') | |
| 691 self.assertEqual(1, len(e['Exports'])) | |
| 692 self.assertTrue(e['Done']) | |
| 693 self.assertEqual(e['Exports'][-1]['Seq'], e['Last']) | |
| 694 e = DoGet(_REMOTE, '/exports?last') | |
| 695 self.assertEqual(1, len(e['Exports'])) | |
| 696 self.assertTrue(e['Done']) | |
| 697 self.assertEqual(e['Exports'][-1]['Seq'], e['Last']) | |
| 698 seqInstance = e['Last'] | |
| 699 | |
| 700 # Export the series | |
| 701 j = DoPost(_REMOTE, '/modalities/orthanctest/store', 'f2635388-f01d497a-15f7c06b-ad7dba06-c4c599fe', 'text/plain') | |
| 702 | |
| 703 e = DoGet(_REMOTE, '/exports') | |
| 704 self.assertEqual(2, len(e['Exports'])) | |
| 705 self.assertTrue(e['Done']) | |
| 706 self.assertEqual(e['Exports'][-1]['Seq'], e['Last']) | |
| 707 seqSeries = e['Last'] | |
| 708 self.assertNotEqual(seqInstance, seqSeries) | |
| 709 e = DoGet(_REMOTE, '/exports?limit=1&since=0') | |
| 710 self.assertEqual(1, len(e['Exports'])) | |
| 711 self.assertFalse(e['Done']) | |
| 712 self.assertEqual(e['Exports'][-1]['Seq'], seqInstance) | |
| 713 e = DoGet(_REMOTE, '/exports?limit=1&since=' + str(seqInstance)) | |
| 714 self.assertEqual(1, len(e['Exports'])) | |
| 715 self.assertTrue(e['Done']) | |
| 716 self.assertEqual(e['Exports'][-1]['Seq'], seqSeries) | |
| 717 e = DoGet(_REMOTE, '/exports?last') | |
| 718 self.assertEqual(1, len(e['Exports'])) | |
| 719 self.assertTrue(e['Done']) | |
| 720 self.assertEqual(e['Exports'][-1]['Seq'], seqSeries) | |
| 721 | |
| 722 # Export the study | |
| 723 j = DoPost(_REMOTE, '/modalities/orthanctest/store', 'b9c08539-26f93bde-c81ab0d7-bffaf2cb-a4d0bdd0', 'text/plain') | |
| 724 seqStudy = DoGet(_REMOTE, '/exports')['Last'] | |
| 725 | |
| 726 # Export the patient | |
| 727 j = DoPost(_REMOTE, '/modalities/orthanctest/store', '6816cb19-844d5aee-85245eba-28e841e6-2414fae2', 'text/plain') | |
| 728 self.assertEqual(1, len(DoGet(_LOCAL, '/patients'))) | |
| 729 self.assertEqual(1, len(DoGet(_LOCAL, '/studies'))) | |
| 730 self.assertEqual(1, len(DoGet(_LOCAL, '/series'))) | |
| 731 self.assertEqual(1, len(DoGet(_LOCAL, '/instances'))) | |
| 732 | |
| 733 e = DoGet(_REMOTE, '/exports') | |
| 734 self.assertEqual(4, len(e['Exports'])) | |
| 735 self.assertTrue(e['Done']) | |
| 736 self.assertEqual(e['Exports'][-1]['Seq'], e['Last']) | |
| 737 seqPatient = e['Last'] | |
| 738 self.assertNotEqual(seqInstance, seqSeries) | |
| 739 self.assertNotEqual(seqSeries, seqStudy) | |
| 740 self.assertNotEqual(seqStudy, seqPatient) | |
| 741 self.assertTrue(seqInstance < seqSeries) | |
| 742 self.assertTrue(seqSeries < seqStudy) | |
| 743 self.assertTrue(seqStudy < seqPatient) | |
| 744 e = DoGet(_REMOTE, '/exports?limit=1&since=0') | |
| 745 self.assertEqual(1, len(e['Exports'])) | |
| 746 self.assertFalse(e['Done']) | |
| 747 self.assertEqual(e['Exports'][-1]['Seq'], seqInstance) | |
| 748 e = DoGet(_REMOTE, '/exports?limit=1&since=' + str(seqInstance)) | |
| 749 self.assertEqual(1, len(e['Exports'])) | |
| 750 self.assertFalse(e['Done']) | |
| 751 self.assertEqual(e['Exports'][-1]['Seq'], seqSeries) | |
| 752 e = DoGet(_REMOTE, '/exports?limit=1&since=' + str(seqSeries)) | |
| 753 self.assertEqual(1, len(e['Exports'])) | |
| 754 self.assertFalse(e['Done']) | |
| 755 self.assertEqual(e['Exports'][-1]['Seq'], seqStudy) | |
| 756 e = DoGet(_REMOTE, '/exports?limit=1&since=' + str(seqStudy)) | |
| 757 self.assertEqual(1, len(e['Exports'])) | |
| 758 self.assertTrue(e['Done']) | |
| 759 self.assertEqual(e['Exports'][-1]['Seq'], seqPatient) | |
| 760 e = DoGet(_REMOTE, '/exports?last') | |
| 761 self.assertEqual(1, len(e['Exports'])) | |
| 762 self.assertTrue(e['Done']) | |
| 763 self.assertEqual(e['Exports'][-1]['Seq'], seqPatient) | |
| 764 | |
| 765 | |
| 766 # Check the content of the logged information | |
| 767 e = DoGet(_REMOTE, '/exports')['Exports'] | |
| 768 | |
| 769 if 'PatientID' in e[0]: | |
| 770 # Since Orthanc 0.8.6 | |
| 771 patient = 'PatientID' | |
| 772 study = 'StudyInstanceUID' | |
| 773 series = 'SeriesInstanceUID' | |
| 774 instance = 'SOPInstanceUID' | |
| 775 else: | |
| 776 # Up to Orthanc 0.8.5 | |
| 777 patient = 'PatientId' | |
| 778 study = 'StudyInstanceUid' | |
| 779 series = 'SeriesInstanceUid' | |
| 780 instance = 'SopInstanceUid' | |
| 781 | |
| 782 for k in range(4): | |
| 783 self.assertTrue('Date' in e[k]) | |
| 784 self.assertTrue('Seq' in e[k]) | |
| 785 self.assertEqual('orthanctest', e[k]['RemoteModality']) | |
| 786 | |
| 787 self.assertEqual(10, len(e[0])) | |
| 788 self.assertEqual('Instance', e[0]['ResourceType']) | |
| 789 self.assertEqual('66a662ce-7430e543-bad44d47-0dc5a943-ec7a538d', e[0]['ID']) | |
| 790 self.assertEqual('/instances/66a662ce-7430e543-bad44d47-0dc5a943-ec7a538d', e[0]['Path']) | |
| 791 self.assertEqual('1.2.840.113619.2.176.2025.1499492.7040.1171286242.109', e[0][instance]) | |
| 792 self.assertEqual('1.2.840.113619.2.176.2025.1499492.7391.1171285944.394', e[0][series]) | |
| 793 self.assertEqual('1.2.840.113619.2.176.2025.1499492.7391.1171285944.390', e[0][study]) | |
| 794 self.assertEqual('ozp00SjY2xG', e[0][patient]) | |
| 795 | |
| 796 self.assertEqual(9, len(e[1])) | |
| 797 self.assertEqual('Series', e[1]['ResourceType']) | |
| 798 self.assertEqual('f2635388-f01d497a-15f7c06b-ad7dba06-c4c599fe', e[1]['ID']) | |
| 799 self.assertEqual('/series/f2635388-f01d497a-15f7c06b-ad7dba06-c4c599fe', e[1]['Path']) | |
| 800 self.assertEqual('1.2.840.113619.2.176.2025.1499492.7391.1171285944.394', e[1][series]) | |
| 801 self.assertEqual('1.2.840.113619.2.176.2025.1499492.7391.1171285944.390', e[1][study]) | |
| 802 self.assertEqual('ozp00SjY2xG', e[1][patient]) | |
| 803 | |
| 804 self.assertEqual(8, len(e[2])) | |
| 805 self.assertEqual('Study', e[2]['ResourceType']) | |
| 806 self.assertEqual('b9c08539-26f93bde-c81ab0d7-bffaf2cb-a4d0bdd0', e[2]['ID']) | |
| 807 self.assertEqual('/studies/b9c08539-26f93bde-c81ab0d7-bffaf2cb-a4d0bdd0', e[2]['Path']) | |
| 808 self.assertEqual('1.2.840.113619.2.176.2025.1499492.7391.1171285944.390', e[2][study]) | |
| 809 self.assertEqual('ozp00SjY2xG', e[2][patient]) | |
| 810 | |
| 811 self.assertEqual(7, len(e[3])) | |
| 812 self.assertEqual('Patient', e[3]['ResourceType']) | |
| 813 self.assertEqual('6816cb19-844d5aee-85245eba-28e841e6-2414fae2', e[3]['ID']) | |
| 814 self.assertEqual('/patients/6816cb19-844d5aee-85245eba-28e841e6-2414fae2', e[3]['Path']) | |
| 815 self.assertEqual('ozp00SjY2xG', e[3][patient]) | |
| 816 | |
| 817 DropOrthanc(_REMOTE) | |
| 818 self.assertEqual(0, len(DoGet(_REMOTE, '/exports')['Exports'])) | |
| 819 | |
| 820 | |
| 821 def test_store_peer(self): | |
| 822 self.assertEqual(0, len(DoGet(_LOCAL, '/exports')['Exports'])) | |
| 823 self.assertEqual(0, len(DoGet(_REMOTE, '/exports')['Exports'])) | |
| 824 | |
| 825 i = UploadInstance(_REMOTE, 'DummyCT.dcm')['ID'] | |
| 826 self.assertEqual(0, len(DoGet(_LOCAL, '/patients'))) | |
| 827 self.assertEqual(1, len(DoGet(_REMOTE, '/patients'))) | |
| 828 | |
| 829 j = DoPost(_REMOTE, '/peers/peer/store', str(i), 'text/plain') | |
| 830 self.assertEqual(1, len(DoGet(_LOCAL, '/patients'))) | |
| 831 self.assertEqual(1, len(DoGet(_REMOTE, '/patients'))) | |
| 832 | |
| 833 self.assertEqual(1, len(DoGet(_REMOTE, '/exports')['Exports'])) | |
| 834 | |
| 835 DropOrthanc(_REMOTE) | |
| 836 self.assertEqual(0, len(DoGet(_REMOTE, '/exports')['Exports'])) | |
| 837 | |
| 838 | |
| 839 def test_bulk_storescu(self): | |
| 840 self.assertEqual(0, len(DoGet(_LOCAL, '/patients'))) | |
| 841 | |
| 842 a = UploadInstance(_REMOTE, 'Knee/T1/IM-0001-0001.dcm') | |
| 843 b = UploadInstance(_REMOTE, 'Knee/T2/IM-0001-0001.dcm') | |
| 844 | |
| 845 j = DoPost(_REMOTE, '/modalities/orthanctest/store', [ a['ID'], b['ID'] ], 'application/json') | |
| 846 self.assertEqual(2, len(DoGet(_LOCAL, '/instances'))) | |
| 847 | |
| 848 DropOrthanc(_LOCAL) | |
| 849 | |
| 850 # Send using patient's UUID | |
| 851 self.assertEqual(0, len(DoGet(_LOCAL, '/instances'))) | |
| 852 j = DoPost(_REMOTE, '/modalities/orthanctest/store', | |
| 853 [ 'ca29faea-b6a0e17f-067743a1-8b778011-a48b2a17' ], 'application/json') | |
| 854 self.assertEqual(2, len(DoGet(_LOCAL, '/instances'))) | |
| 855 | |
| 856 | |
| 857 def test_color(self): | |
| 858 i = UploadInstance(_REMOTE, 'ColorTestMalaterre.dcm')['ID'] | |
| 859 im = GetImage(_REMOTE, '/instances/%s/preview' % i) | |
| 860 self.assertEqual("RGB", im.mode) | |
| 861 self.assertEqual(41, im.size[0]) | |
| 862 self.assertEqual(41, im.size[1]) | |
| 863 | |
| 864 # http://effbot.org/zone/pil-comparing-images.htm | |
| 13 | 865 truth = Image.open(GetDatabasePath('ColorTestMalaterre.png')) |
| 11 | 866 self.assertTrue(ImageChops.difference(im, truth).getbbox() is None) |
| 867 | |
| 868 | |
| 12 | 869 def test_faking_ruby_put(self): |
| 870 UploadInstance(_REMOTE, 'Knee/T1/IM-0001-0001.dcm') | |
| 871 UploadInstance(_REMOTE, 'Brainix/Flair/IM-0001-0001.dcm') | |
| 872 self.assertEqual(2, len(DoGet(_REMOTE, '/patients'))) | |
| 873 a = DoGet(_REMOTE, '/patients')[0] | |
| 874 b = DoGet(_REMOTE, '/patients')[1] | |
| 875 self.assertEqual(0, DoGet(_REMOTE, '/patients/%s/protected' % a)) | |
| 876 DoGet(_REMOTE, '/patients/%s/protected' % a, data = { '_method' : 'PUT' }, body = '0') | |
| 877 self.assertEqual(0, DoGet(_REMOTE, '/patients/%s/protected' % a)) | |
| 878 DoGet(_REMOTE, '/patients/%s/protected' % a, data = { '_method' : 'PUT' }, body = '1') | |
| 879 self.assertEqual(1, DoGet(_REMOTE, '/patients/%s/protected' % a)) | |
| 880 DoGet(_REMOTE, '/patients/%s/protected' % a, data = { '_method' : 'PUT' }, body = '0') | |
| 881 self.assertEqual(0, DoGet(_REMOTE, '/patients/%s/protected' % a)) | |
| 882 | |
| 883 | |
| 884 def test_faking_ruby_delete(self): | |
| 885 UploadInstance(_REMOTE, 'Knee/T1/IM-0001-0001.dcm') | |
| 886 UploadInstance(_REMOTE, 'Brainix/Flair/IM-0001-0001.dcm') | |
| 887 self.assertEqual(2, len(DoGet(_REMOTE, '/patients'))) | |
| 888 a = DoGet(_REMOTE, '/patients')[0] | |
| 889 b = DoGet(_REMOTE, '/patients')[1] | |
| 890 DoGet(_REMOTE, '/patients/%s' % a, data = { '_method' : 'DELETE' }) | |
| 891 self.assertEqual(1, len(DoGet(_REMOTE, '/patients'))) | |
| 892 DoGet(_REMOTE, '/patients/%s' % b, data = { '_method' : 'DELETE' }) | |
| 893 self.assertEqual(0, len(DoGet(_REMOTE, '/patients'))) | |
| 894 | |
| 895 | |
| 896 def test_faking_google_put(self): | |
| 897 UploadInstance(_REMOTE, 'Knee/T1/IM-0001-0001.dcm') | |
| 898 UploadInstance(_REMOTE, 'Brainix/Flair/IM-0001-0001.dcm') | |
| 899 self.assertEqual(2, len(DoGet(_REMOTE, '/patients'))) | |
| 900 a = DoGet(_REMOTE, '/patients')[0] | |
| 901 b = DoGet(_REMOTE, '/patients')[1] | |
| 902 self.assertEqual(0, DoGet(_REMOTE, '/patients/%s/protected' % a)) | |
| 903 DoPost(_REMOTE, '/patients/%s/protected' % a, headers = { 'X-HTTP-Method-Override' : 'PUT' }, data = '0') | |
| 904 self.assertEqual(0, DoGet(_REMOTE, '/patients/%s/protected' % a)) | |
| 905 DoPost(_REMOTE, '/patients/%s/protected' % a, headers = { 'X-HTTP-Method-Override' : 'PUT' }, data = '1') | |
| 906 self.assertEqual(1, DoGet(_REMOTE, '/patients/%s/protected' % a)) | |
| 907 DoPost(_REMOTE, '/patients/%s/protected' % a, headers = { 'X-HTTP-Method-Override' : 'PUT' }, data = '0') | |
| 908 self.assertEqual(0, DoGet(_REMOTE, '/patients/%s/protected' % a)) | |
| 909 | |
| 910 | |
| 911 def test_faking_google_delete(self): | |
| 912 UploadInstance(_REMOTE, 'Knee/T1/IM-0001-0001.dcm') | |
| 913 UploadInstance(_REMOTE, 'Brainix/Flair/IM-0001-0001.dcm') | |
| 914 self.assertEqual(2, len(DoGet(_REMOTE, '/patients'))) | |
| 915 a = DoGet(_REMOTE, '/patients')[0] | |
| 916 b = DoGet(_REMOTE, '/patients')[1] | |
| 917 DoPost(_REMOTE, '/patients/%s' % a, headers = { 'X-HTTP-Method-Override' : 'DELETE' }) | |
| 918 self.assertEqual(1, len(DoGet(_REMOTE, '/patients'))) | |
| 919 DoPost(_REMOTE, '/patients/%s' % b, headers = { 'X-HTTP-Method-Override' : 'DELETE' }) | |
| 920 self.assertEqual(0, len(DoGet(_REMOTE, '/patients'))) | |
| 921 | |
| 922 | |
| 923 def test_lua(self): | |
| 924 self.assertEqual(42, DoPost(_REMOTE, '/tools/execute-script', 'print(42)')) | |
| 925 self.assertTrue(IsDefinedInLua(_REMOTE, 'PrintRecursive')) | |
| 926 self.assertFalse(IsDefinedInLua(_REMOTE, 'HelloWorld')) | |
| 927 | |
| 928 | |
| 929 def test_metadata(self): | |
| 930 UploadInstance(_REMOTE, 'Knee/T1/IM-0001-0001.dcm') | |
| 931 p = DoGet(_REMOTE, '/patients')[0] | |
| 932 i = DoGet(_REMOTE, '/instances')[0] | |
| 933 | |
| 934 m = DoGet(_REMOTE, '/patients/%s/metadata' % p) | |
| 935 self.assertEqual(1, len(m)) | |
| 936 self.assertEqual('LastUpdate', m[0]) | |
| 937 | |
| 938 m = DoGet(_REMOTE, '/instances/%s/metadata' % i) | |
|
95
a807a4699eb4
testing of metadata SopClassUid
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
92
diff
changeset
|
939 self.assertEqual(6, len(m)) |
| 12 | 940 self.assertTrue('IndexInSeries' in m) |
| 941 self.assertTrue('ReceptionDate' in m) | |
| 942 self.assertTrue('RemoteAET' in m) | |
|
63
2652d562267a
test Origin metadata of instances
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
62
diff
changeset
|
943 self.assertTrue('Origin' in m) |
|
89
74b7b9aed5f8
test TransferSyntax metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
87
diff
changeset
|
944 self.assertTrue('TransferSyntax' in m) |
|
95
a807a4699eb4
testing of metadata SopClassUid
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
92
diff
changeset
|
945 self.assertTrue('SopClassUid' in m) |
|
63
2652d562267a
test Origin metadata of instances
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
62
diff
changeset
|
946 self.assertEqual(DoGet(_REMOTE, '/instances/%s/metadata/IndexInSeries' % i), 1) |
|
2652d562267a
test Origin metadata of instances
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
changeset
|
947 self.assertEqual(DoGet(_REMOTE, '/instances/%s/metadata/Origin' % i), 'RestApi') |
|
2652d562267a
test Origin metadata of instances
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
62
diff
changeset
|
948 self.assertEqual(DoGet(_REMOTE, '/instances/%s/metadata/RemoteAET' % i), '') # None, received by REST API |
|
89
74b7b9aed5f8
test TransferSyntax metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
87
diff
changeset
|
949 self.assertEqual(DoGet(_REMOTE, '/instances/%s/metadata/TransferSyntax' % i), '1.2.840.10008.1.2.4.91') # JPEG2k |
|
95
a807a4699eb4
testing of metadata SopClassUid
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
92
diff
changeset
|
950 self.assertEqual(DoGet(_REMOTE, '/instances/%s/metadata/SopClassUid' % i), '1.2.840.10008.5.1.4.1.1.4') |
| 12 | 951 |
| 952 # Play with custom metadata | |
| 953 DoPut(_REMOTE, '/patients/%s/metadata/5555' % p, 'coucou') | |
| 954 m = DoGet(_REMOTE, '/patients/%s/metadata' % p) | |
| 955 self.assertEqual(2, len(m)) | |
| 956 self.assertTrue('LastUpdate' in m) | |
| 957 self.assertTrue('5555' in m) | |
| 958 self.assertEqual('coucou', DoGet(_REMOTE, '/patients/%s/metadata/5555' % p)) | |
| 959 DoPut(_REMOTE, '/patients/%s/metadata/5555' % p, 'hello') | |
| 960 self.assertEqual('hello', DoGet(_REMOTE, '/patients/%s/metadata/5555' % p)) | |
| 961 DoDelete(_REMOTE, '/patients/%s/metadata/5555' % p) | |
| 962 m = DoGet(_REMOTE, '/patients/%s/metadata' % p) | |
| 963 self.assertEqual(1, len(m)) | |
| 964 self.assertTrue('LastUpdate' in m) | |
| 13 | 965 |
| 966 | |
| 967 def test_statistics(self): | |
| 968 # Upload 16 instances | |
| 969 for i in range(4): | |
| 970 UploadInstance(_REMOTE, 'Brainix/Flair/IM-0001-000%d.dcm' % (i + 1)) | |
| 971 UploadInstance(_REMOTE, 'Brainix/Epi/IM-0001-000%d.dcm' % (i + 1)) | |
| 972 UploadInstance(_REMOTE, 'Knee/T1/IM-0001-000%d.dcm' % (i + 1)) | |
| 973 UploadInstance(_REMOTE, 'Knee/T2/IM-0001-000%d.dcm' % (i + 1)) | |
| 974 | |
| 975 s = DoGet(_REMOTE, '/statistics') | |
| 976 self.assertEqual(16, s['CountInstances']) | |
| 977 self.assertEqual(2, s['CountPatients']) | |
| 978 self.assertEqual(2, s['CountStudies']) | |
| 979 self.assertEqual(4, s['CountSeries']) | |
| 980 d = int(s['TotalUncompressedSize']) | |
| 981 | |
| 982 e = 0 | |
| 983 for patient in DoGet(_REMOTE, '/patients'): | |
| 984 s = DoGet(_REMOTE, '/patients/%s/statistics' % patient) | |
| 985 self.assertEqual(8, s['CountInstances']) | |
| 986 self.assertEqual(1, s['CountStudies']) | |
| 987 self.assertEqual(2, s['CountSeries']) | |
| 988 e += int(s['UncompressedSize']) | |
| 989 | |
| 990 for study in DoGet(_REMOTE, '/studies'): | |
| 991 s = DoGet(_REMOTE, '/studies/%s/statistics' % study) | |
| 992 self.assertEqual(8, s['CountInstances']) | |
| 993 self.assertEqual(2, s['CountSeries']) | |
| 994 e += int(s['UncompressedSize']) | |
| 995 | |
| 996 for series in DoGet(_REMOTE, '/series'): | |
| 997 s = DoGet(_REMOTE, '/series/%s/statistics' % series) | |
| 998 self.assertEqual(4, s['CountInstances']) | |
| 999 e += int(s['UncompressedSize']) | |
| 1000 | |
| 1001 self.assertEqual(3 * d, e) | |
| 1002 | |
| 1003 | |
| 1004 def test_custom_attachment(self): | |
| 1005 UploadInstance(_REMOTE, 'Brainix/Flair/IM-0001-0001.dcm') | |
| 1006 patient = DoGet(_REMOTE, '/patients')[0] | |
| 1007 instance = DoGet(_REMOTE, '/instances')[0] | |
| 1008 size = int(DoGet(_REMOTE, '/patients/%s/statistics' % patient)['DiskSize']) | |
| 1009 self.assertEqual(size, int(DoGet(_REMOTE, '/statistics')['TotalDiskSize'])) | |
| 1010 | |
| 1011 self.assertEqual(0, len(DoGet(_REMOTE, '/patients/%s/attachments' % patient))) | |
| 1012 self.assertEqual(2, len(DoGet(_REMOTE, '/instances/%s/attachments' % instance))) | |
| 1013 self.assertTrue('dicom' in DoGet(_REMOTE, '/instances/%s/attachments' % instance)) | |
| 1014 self.assertTrue('dicom-as-json' in DoGet(_REMOTE, '/instances/%s/attachments' % instance)) | |
| 1015 | |
| 1016 self.assertRaises(Exception, lambda: DoPut(_REMOTE, '/patients/%s/attachments/22' % patient, 'hello')) | |
| 1017 hello = 'hellohellohellohellohellohellohellohellohello' | |
| 1018 DoPut(_REMOTE, '/patients/%s/attachments/1025' % patient, hello) | |
| 1019 self.assertEqual(int(DoGet(_REMOTE, '/patients/%s/statistics' % patient)['DiskSize']), | |
| 1020 int(DoGet(_REMOTE, '/statistics')['TotalDiskSize'])) | |
| 1021 self.assertEqual(int(DoGet(_REMOTE, '/patients/%s/statistics' % patient)['DiskSize']), | |
| 1022 size + int(DoGet(_REMOTE, '/patients/%s/attachments/1025/compressed-size' % patient))) | |
| 1023 | |
| 1024 DoPut(_REMOTE, '/patients/%s/attachments/1026' % patient, 'world') | |
| 1025 self.assertEqual(int(DoGet(_REMOTE, '/patients/%s/statistics' % patient)['DiskSize']), | |
| 1026 int(DoGet(_REMOTE, '/statistics')['TotalDiskSize'])) | |
| 1027 self.assertEqual(int(DoGet(_REMOTE, '/patients/%s/statistics' % patient)['DiskSize']), | |
| 1028 size + | |
| 1029 int(DoGet(_REMOTE, '/patients/%s/attachments/1025/compressed-size' % patient)) + | |
| 1030 int(DoGet(_REMOTE, '/patients/%s/attachments/1026/compressed-size' % patient))) | |
| 1031 | |
| 1032 self.assertEqual(2, len(DoGet(_REMOTE, '/patients/%s/attachments' % patient))) | |
| 1033 self.assertEqual(hello, DoGet(_REMOTE, '/patients/%s/attachments/1025/data' % patient)) | |
| 1034 self.assertEqual('world', DoGet(_REMOTE, '/patients/%s/attachments/1026/data' % patient)) | |
| 1035 DoPost(_REMOTE, '/patients/%s/attachments/1025/verify-md5' % patient) | |
| 1036 DoPost(_REMOTE, '/patients/%s/attachments/1026/verify-md5' % patient) | |
| 1037 DoPut(_REMOTE, '/patients/%s/attachments/1026' % patient, 'world2') | |
| 1038 self.assertEqual('world2', DoGet(_REMOTE, '/patients/%s/attachments/1026/data' % patient)) | |
| 1039 | |
| 1040 self.assertRaises(Exception, lambda: DoDelete(_REMOTE, '/instances/%s/attachments/dicom' % instance)) | |
| 1041 DoDelete(_REMOTE, '/patients/%s/attachments/1025' % patient) | |
| 1042 self.assertEqual(int(DoGet(_REMOTE, '/patients/%s/statistics' % patient)['DiskSize']), | |
| 1043 int(DoGet(_REMOTE, '/statistics')['TotalDiskSize'])) | |
| 1044 self.assertEqual(int(DoGet(_REMOTE, '/patients/%s/statistics' % patient)['DiskSize']), | |
| 1045 size + int(DoGet(_REMOTE, '/patients/%s/attachments/1026/compressed-size' % patient))) | |
| 1046 | |
| 1047 self.assertEqual(1, len(DoGet(_REMOTE, '/patients/%s/attachments' % patient))) | |
| 1048 DoDelete(_REMOTE, '/patients/%s/attachments/1026' % patient) | |
| 1049 self.assertEqual(0, len(DoGet(_REMOTE, '/patients/%s/attachments' % patient))) | |
| 1050 | |
| 1051 self.assertEqual(int(DoGet(_REMOTE, '/patients/%s/statistics' % patient)['DiskSize']), size) | |
| 1052 self.assertEqual(size, int(DoGet(_REMOTE, '/statistics')['TotalDiskSize'])) | |
| 1053 | |
| 1054 | |
| 1055 def test_incoming_storescu(self): | |
| 1056 self.assertEqual(0, len(DoGet(_REMOTE, '/patients'))) | |
| 45 | 1057 subprocess.check_call([ FindExecutable('storescu'), |
|
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1058 _REMOTE['Server'], str(_REMOTE['DicomPort']), |
| 13 | 1059 GetDatabasePath('ColorTestImageJ.dcm') ]) |
| 1060 self.assertEqual(1, len(DoGet(_REMOTE, '/patients'))) | |
| 1061 | |
|
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1062 i = DoGet(_REMOTE, '/instances') |
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1063 self.assertEqual(1, len(i)) |
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1064 m = DoGet(_REMOTE, '/instances/%s/metadata' % i[0]) |
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1065 self.assertEqual(6, len(m)) |
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1066 self.assertTrue('IndexInSeries' in m) |
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1067 self.assertTrue('ReceptionDate' in m) |
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1068 self.assertTrue('RemoteAET' in m) |
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1069 self.assertTrue('Origin' in m) |
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1070 self.assertTrue('TransferSyntax' in m) |
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1071 self.assertTrue('SopClassUid' in m) |
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1072 self.assertEqual(DoGet(_REMOTE, '/instances/%s/metadata/IndexInSeries' % i[0]), 1) |
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1073 self.assertEqual(DoGet(_REMOTE, '/instances/%s/metadata/Origin' % i[0]), 'DicomProtocol') |
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1074 self.assertEqual(DoGet(_REMOTE, '/instances/%s/metadata/RemoteAET' % i[0]), 'STORESCU') |
|
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1075 self.assertEqual(DoGet(_REMOTE, '/instances/%s/metadata/TransferSyntax' % i[0]), '1.2.840.10008.1.2.1') |
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1076 self.assertEqual(DoGet(_REMOTE, '/instances/%s/metadata/SopClassUid' % i[0]), '1.2.840.10008.5.1.4.1.1.7') |
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1077 |
| 13 | 1078 |
| 1079 def test_incoming_findscu(self): | |
| 1080 UploadInstance(_REMOTE, 'Multiframe.dcm') | |
| 1081 UploadInstance(_REMOTE, 'ColorTestImageJ.dcm') | |
| 1082 | |
| 1083 i = CallFindScu([ '-k', '0008,0052=PATIENT', '-k', '0010,0010' ]) | |
| 1084 patientNames = re.findall('\(0010,0010\).*?\[(.*?)\]', i) | |
| 1085 self.assertEqual(2, len(patientNames)) | |
| 1086 self.assertTrue('Test Patient BG ' in patientNames) | |
| 1087 self.assertTrue('Anonymized' in patientNames) | |
| 1088 | |
| 1089 i = CallFindScu([ '-k', '0008,0052=SERIES', '-k', '0008,0021' ]) | |
| 1090 series = re.findall('\(0008,0021\).*?\[\s*(.*?)\s*\]', i) | |
| 1091 self.assertEqual(2, len(series)) | |
| 1092 self.assertTrue('20070208' in series) | |
| 1093 self.assertTrue('19980312' in series) | |
| 1094 | |
|
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1095 i = CallFindScu([ '-k', '0008,0052=SERIES', '-k', '0008,0021', '-k', 'ModalitiesInStudy=MR\\XA' ]) |
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1096 series = re.findall('\(0008,0021\).*?\[\s*(.*?)\s*\]', i) |
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1097 self.assertEqual(1, len(series)) |
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1098 self.assertTrue('19980312' in series) |
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1099 |
| 13 | 1100 i = CallFindScu([ '-k', '0008,0052=SERIES', '-k', 'PatientName=Anonymized' ]) |
| 1101 series = re.findall('\(0010,0010\).*?\[\s*(.*?)\s*\]', i) | |
| 1102 self.assertEqual(1, len(series)) | |
| 1103 | |
| 1104 # Test the "CaseSentitivePN" flag (false by default) | |
| 1105 i = CallFindScu([ '-k', '0008,0052=SERIES', '-k', 'PatientName=anonymized' ]) | |
| 1106 series = re.findall('\(0010,0010\).*?\[\s*(.*?)\s*\]', i) | |
| 1107 self.assertEqual(1, len(series)) | |
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1108 |
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1109 # Test returning sequence values (only since Orthanc 0.9.5) |
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1110 i = CallFindScu([ '-k', '0008,0052=SERIES', '-k', '0008,2112' ]) # "ColorTestImageJ" has this sequence tag |
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1111 sequences = re.findall('\(0008,2112\)', i) |
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1112 self.assertEqual(1, len(sequences)) |
| 70 | 1113 |
| 1114 # Test range search (buggy if Orthanc <= 0.9.6) | |
| 1115 i = CallFindScu([ '-k', '0008,0052=STUDY', '-k', 'StudyDate=19980312-' ]) | |
| 1116 studies = re.findall('\(0008,0020\).*?\[\s*(.*?)\s*\]', i) | |
| 1117 self.assertEqual(2, len(studies)) | |
| 1118 self.assertTrue('20070208' in studies) | |
| 1119 self.assertTrue('19980312' in studies) | |
| 1120 i = CallFindScu([ '-k', '0008,0052=STUDY', '-k', 'StudyDate=19980312-19980312' ]) | |
| 1121 studies = re.findall('\(0008,0020\).*?\[\s*(.*?)\s*\]', i) | |
| 1122 self.assertEqual(1, len(studies)) | |
| 1123 self.assertTrue('19980312' in studies) | |
| 1124 i = CallFindScu([ '-k', '0008,0052=STUDY', '-k', 'StudyDate=-19980312' ]) | |
| 1125 studies = re.findall('\(0008,0020\).*?\[\s*(.*?)\s*\]', i) | |
| 1126 self.assertEqual(1, len(studies)) | |
| 1127 self.assertTrue('19980312' in studies) | |
| 13 | 1128 |
| 1129 | |
| 1130 def test_incoming_movescu(self): | |
| 1131 UploadInstance(_REMOTE, 'Multiframe.dcm') | |
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1132 |
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1133 # No matching patient, so no job is created |
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1134 self.assertEqual(0, len(DoGet(_LOCAL, '/patients'))) |
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1135 CallMoveScu([ '--patient', '-k', '0008,0052=PATIENT', '-k', 'PatientID=none' ]) |
| 13 | 1136 self.assertEqual(0, len(DoGet(_LOCAL, '/patients'))) |
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1137 |
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1138 # 1 Matching patient, track the job |
| 138 | 1139 self.assertTrue(MonitorJob(_REMOTE, lambda: CallMoveScu([ |
| 1140 '--patient', | |
| 1141 '-k', '0008,0052=PATIENT', | |
| 1142 '-k', 'PatientID=12345678' | |
| 1143 ]))) | |
| 13 | 1144 self.assertEqual(1, len(DoGet(_LOCAL, '/patients'))) |
| 1145 | |
| 1146 | |
| 1147 def test_findscu(self): | |
| 1148 i = UploadInstance(_REMOTE, 'DummyCT.dcm')['ID'] | |
| 1149 j = UploadInstance(_REMOTE, 'Issue22.dcm')['ID'] | |
| 1150 k = UploadInstance(_REMOTE, 'ColorTestImageJ.dcm')['ID'] | |
| 1151 DoPost(_REMOTE, '/modalities/orthanctest/store', str(i), 'text/plain') | |
| 1152 | |
| 1153 # Test the "find-patient" level | |
| 1154 p = DoPost(_REMOTE, '/modalities/orthanctest/find-patient', { }) | |
| 1155 self.assertEqual(1, len(p)) | |
| 1156 self.assertEqual('ozp00SjY2xG', p[0]['PatientID']) | |
| 1157 | |
| 1158 # Test wildcards constraints. The "LO" value representation | |
| 1159 # for PatientID is always case-sensitive, but the "PN" for | |
| 1160 # PatientName might depend on the implementation: | |
| 1161 # "GenerateConfigurationForTests.py" will force it to be case | |
| 1162 # insensitive (which was the default until Orthanc 0.8.6). | |
| 1163 p = DoPost(_REMOTE, '/modalities/orthanctest/find-patient', { 'PatientName' : 'K*' }) | |
| 1164 self.assertEqual(1, len(p)) | |
| 1165 | |
| 1166 p = DoPost(_REMOTE, '/modalities/orthanctest/find-patient', { 'PatientName' : 'k*' }) | |
| 1167 self.assertEqual(1, len(p)) | |
| 1168 | |
| 1169 p = DoPost(_REMOTE, '/modalities/orthanctest/find-patient', { 'PatientID' : 'ozp*' }) | |
| 1170 self.assertEqual(1, len(p)) | |
| 1171 | |
| 1172 p = DoPost(_REMOTE, '/modalities/orthanctest/find-patient', { 'PatientID' : 'o?p*' }) | |
| 1173 self.assertEqual(1, len(p)) | |
| 1174 | |
| 1175 p = DoPost(_REMOTE, '/modalities/orthanctest/find-patient', { 'PatientID' : '0?q*' }) | |
| 1176 self.assertEqual(0, len(p)) | |
| 1177 | |
| 1178 p = DoPost(_REMOTE, '/modalities/orthanctest/find-patient', { 'PatientName' : 'B*' }) | |
| 1179 self.assertEqual(0, len(p)) | |
| 1180 | |
| 1181 p = DoPost(_REMOTE, '/modalities/orthanctest/find-patient', { 'PatientName' : 'b*' }) | |
| 1182 self.assertEqual(0, len(p)) | |
| 1183 | |
| 1184 DoPost(_REMOTE, '/modalities/orthanctest/store', str(j), 'text/plain') | |
| 1185 DoPost(_REMOTE, '/modalities/orthanctest/store', str(k), 'text/plain') | |
| 1186 DoPost(_REMOTE, '/modalities/orthanctest/find-patient', { }) | |
| 1187 self.assertEqual(3, len(DoPost(_REMOTE, '/modalities/orthanctest/find-patient', { }))) | |
| 1188 | |
| 1189 p = DoPost(_REMOTE, '/modalities/orthanctest/find-patient', { 'PatientName' : 'A*' }) | |
| 1190 self.assertEqual(2, len(p)) | |
| 1191 | |
| 1192 # Test the "find-study" level. This is the instance "ColorTestImageJ.dcm" | |
| 1193 s = DoPost(_REMOTE, '/modalities/orthanctest/find-study', { 'PatientID' : 'B9uTHKOZ' }) | |
| 1194 self.assertEqual(1, len(s)) | |
| 1195 self.assertEqual('20070208', s[0]['StudyDate']) | |
| 1196 | |
| 1197 # Test range searches | |
| 1198 t = DoPost(_REMOTE, '/modalities/orthanctest/find-study', { 'PatientID' : 'B9uTHKOZ', | |
| 1199 'StudyDate' : '-20070101' }) | |
| 1200 self.assertEqual(0, len(t)) | |
| 1201 | |
| 1202 t = DoPost(_REMOTE, '/modalities/orthanctest/find-study', { 'PatientID' : 'B9uTHKOZ', | |
| 1203 'StudyDate' : '20090101-' }) | |
| 1204 self.assertEqual(0, len(t)) | |
| 1205 | |
| 1206 t = DoPost(_REMOTE, '/modalities/orthanctest/find-study', { 'PatientID' : 'B9uTHKOZ', | |
| 1207 'StudyDate' : '20070101-' }) | |
| 1208 self.assertEqual(1, len(t)) | |
| 1209 | |
| 1210 t = DoPost(_REMOTE, '/modalities/orthanctest/find-study', { 'PatientID' : 'B9uTHKOZ', | |
| 1211 'StudyDate' : '-20090101' }) | |
| 1212 self.assertEqual(1, len(t)) | |
| 1213 | |
| 1214 t = DoPost(_REMOTE, '/modalities/orthanctest/find-study', { 'PatientID' : 'B9uTHKOZ', | |
| 1215 'StudyDate' : '20070207-20070207' }) | |
| 1216 self.assertEqual(0, len(t)) | |
| 1217 | |
| 1218 t = DoPost(_REMOTE, '/modalities/orthanctest/find-study', { 'PatientID' : 'B9uTHKOZ', | |
| 1219 'StudyDate' : '20070208-20070208' }) | |
| 1220 self.assertEqual(1, len(t)) | |
| 1221 | |
| 1222 t = DoPost(_REMOTE, '/modalities/orthanctest/find-study', { 'PatientID' : 'B9uTHKOZ', | |
| 1223 'StudyDate' : '20070209-20070209' }) | |
| 1224 self.assertEqual(0, len(t)) | |
| 1225 | |
| 1226 # Test the ModalitiesInStudy tag | |
| 1227 t = DoPost(_REMOTE, '/modalities/orthanctest/find-study', { | |
| 1228 'PatientID' : 'B9uTHKOZ', | |
| 1229 'ModalitiesInStudy' : 'US' }) | |
| 1230 self.assertEqual(0, len(t)) | |
| 1231 | |
| 1232 t = DoPost(_REMOTE, '/modalities/orthanctest/find-study', { | |
| 1233 'PatientID' : 'B9uTHKOZ', | |
| 1234 'ModalitiesInStudy' : 'CT' }) | |
| 1235 self.assertEqual(1, len(t)) | |
| 1236 | |
| 1237 t = DoPost(_REMOTE, '/modalities/orthanctest/find-study', { | |
| 1238 'PatientID' : 'B9uTHKOZ', | |
| 1239 'ModalitiesInStudy' : 'US\\CT' }) | |
| 1240 self.assertEqual(1, len(t)) | |
| 1241 | |
| 1242 # Test the "find-series" level | |
| 1243 t = DoPost(_REMOTE, '/modalities/orthanctest/find-series', { | |
| 1244 'PatientID' : 'B9uTHKOZ', | |
| 1245 'StudyInstanceUID' : s[0]['StudyInstanceUID'] }) | |
| 1246 self.assertEqual(1, len(t)) | |
| 1247 | |
| 1248 # Test "\" separator | |
| 1249 t = DoPost(_REMOTE, '/modalities/orthanctest/find-series', { | |
| 1250 'PatientID' : 'B9uTHKOZ', | |
| 1251 'StudyInstanceUID' : s[0]['StudyInstanceUID'], | |
| 1252 'Modality' : 'MR\\CT\\US' }) | |
| 1253 self.assertEqual(1, len(t)) | |
| 1254 | |
| 1255 t = DoPost(_REMOTE, '/modalities/orthanctest/find-series', { | |
| 1256 'PatientID' : 'B9uTHKOZ', | |
| 1257 'StudyInstanceUID' : s[0]['StudyInstanceUID'], | |
| 1258 'Modality' : 'MR\\US' }) | |
| 1259 self.assertEqual(0, len(t)) | |
| 1260 | |
| 1261 | |
| 1262 def test_update_modalities(self): | |
| 1263 try: | |
| 1264 DoDelete(_REMOTE, '/modalities/toto') | |
| 1265 except: | |
| 1266 pass | |
| 1267 try: | |
| 1268 DoDelete(_REMOTE, '/modalities/tata') | |
| 1269 except: | |
| 1270 pass | |
| 1271 self.assertRaises(Exception, lambda: DoGet(_REMOTE, '/modalities/toto')) | |
| 1272 DoPut(_REMOTE, '/modalities/toto', [ "STORESCP", "localhost", 2000 ]) | |
| 116 | 1273 DoPut(_REMOTE, '/modalities/tata', [ "STORESCP", "localhost", 2000, 'MedInria' ]) # check backward compatiblity with obsolete manufacturer |
| 1274 DoDelete(_REMOTE, '/modalities/tata') | |
| 124 | 1275 DoPut(_REMOTE, '/modalities/tata', [ "STORESCP", "localhost", 2000, 'GenericNoUniversalWildcard' ]) |
|
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1276 DoDelete(_REMOTE, '/modalities/tata') |
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|
1277 DoPut(_REMOTE, '/modalities/tata', [ "STORESCP", "localhost", 2000, 'GenericNoWildcardInDates' ]) |
| 128 | 1278 modalitiesReadback = DoGet(_REMOTE, '/modalities?expand') |
| 1279 self.assertEqual([ "STORESCP", "localhost", 2000, 'GenericNoWildcardInDates' ], modalitiesReadback['tata']) | |
| 116 | 1280 self.assertRaises(Exception, lambda: DoPut(_REMOTE, '/modalities/toto', [ "STORESCP", "localhost", 2000, 'InvalidManufacturerName' ])) |
| 13 | 1281 self.assertTrue('store' in DoGet(_REMOTE, '/modalities/toto')) |
| 1282 self.assertTrue('store' in DoGet(_REMOTE, '/modalities/tata')) | |
| 1283 DoDelete(_REMOTE, '/modalities/toto') | |
| 1284 DoDelete(_REMOTE, '/modalities/tata') | |
| 1285 self.assertRaises(Exception, lambda: DoGet(_REMOTE, '/modalities/toto')) | |
| 1286 self.assertRaises(Exception, lambda: DoGet(_REMOTE, '/modalities/tata')) | |
| 1287 | |
| 1288 | |
| 1289 def test_update_peers(self): | |
| 1290 # curl -X PUT http://localhost:8042/peers/toto -d '["http://localhost:8042/"]' -v | |
| 1291 try: | |
| 1292 DoDelete(_REMOTE, '/peers/toto') | |
| 1293 except: | |
| 1294 pass | |
| 1295 try: | |
| 1296 DoDelete(_REMOTE, '/peers/tata') | |
| 1297 except: | |
| 1298 pass | |
| 1299 self.assertRaises(Exception, lambda: DoGet(_REMOTE, '/peers/toto')) | |
| 1300 DoPut(_REMOTE, '/peers/toto', [ 'http://localhost:8042/' ]) | |
| 1301 DoPut(_REMOTE, '/peers/tata', [ 'http://localhost:8042/', 'user', 'pass' ]) | |
| 128 | 1302 self.assertTrue('tata' in DoGet(_REMOTE, '/peers')) |
| 1303 peersReadback = DoGet(_REMOTE, '/peers?expand') | |
| 1304 self.assertEqual('http://localhost:8042/', peersReadback['tata']['Url']) | |
| 1305 self.assertEqual('user', peersReadback['tata']['Username']) | |
| 1306 self.assertFalse('Password' in peersReadback['tata']) # make sure no sensitive data is included | |
| 1307 self.assertFalse('CertificateFile' in peersReadback['tata']) # make sure no sensitive data is included | |
| 1308 self.assertFalse('CertificateKeyFile' in peersReadback['tata']) # make sure no sensitive data is included | |
| 1309 self.assertFalse('CertificateKeyPassword' in peersReadback['tata']) # make sure no sensitive data is included | |
| 1310 self.assertFalse('Pkcs11' in peersReadback['tata']) # make sure no sensitive data is included | |
| 13 | 1311 self.assertRaises(Exception, lambda: DoPut(_REMOTE, '/peers/toto', [ 'http://localhost:8042/', 'a' ])) |
| 1312 self.assertRaises(Exception, lambda: DoPut(_REMOTE, '/peers/toto', [ 'http://localhost:8042/', 'a', 'b', 'c' ])) | |
| 1313 self.assertTrue('store' in DoGet(_REMOTE, '/peers/toto')) | |
| 1314 self.assertTrue('store' in DoGet(_REMOTE, '/peers/tata')) | |
| 1315 DoDelete(_REMOTE, '/peers/toto') | |
| 1316 DoDelete(_REMOTE, '/peers/tata') | |
| 1317 self.assertRaises(Exception, lambda: DoGet(_REMOTE, '/peers/toto')) | |
| 1318 self.assertRaises(Exception, lambda: DoGet(_REMOTE, '/peers/tata')) | |
| 1319 | |
| 1320 | |
| 1321 def test_mesterhazy_modification(self): | |
| 1322 # When I modify a series ( eg. curl | |
| 1323 # http://localhost:8042/series/uidhere/modify -X POST -d | |
| 1324 # '{"Replace":{"SeriesDate":"19990101"}}' ) the modified | |
| 1325 # series is added to a new Study, instead of the existing | |
| 1326 # Study. Fixed in Orthanc 0.7.5 | |
| 1327 | |
| 1328 u = UploadInstance(_REMOTE, 'DummyCT.dcm') | |
| 1329 study = 'b9c08539-26f93bde-c81ab0d7-bffaf2cb-a4d0bdd0' | |
| 1330 series = 'f2635388-f01d497a-15f7c06b-ad7dba06-c4c599fe' | |
| 1331 | |
| 1332 modified = DoPost(_REMOTE, '/series/%s/modify' % series, | |
| 1333 json.dumps({ "Replace" : { "SeriesDate" : "19990101" }})) | |
| 1334 | |
| 1335 self.assertEqual(study, DoGet(_REMOTE, '/series/%s' % modified['ID']) ['ParentStudy']) | |
| 1336 | |
| 1337 | |
| 1338 def test_create(self): | |
| 1339 i = DoPost(_REMOTE, '/tools/create-dicom', | |
| 1340 json.dumps({ | |
| 1341 'PatientName' : 'Jodogne', | |
| 1342 'Modality' : 'CT', | |
| 58 | 1343 'SOPClassUID' : '1.2.840.10008.5.1.4.1.1.1', |
| 13 | 1344 'PixelData' : 'data:image/png;base64,iVBORw0KGgoAAAANSUhEUgAAAAUAAAAFCAYAAACNbyblAAAAHElEQVQI12P4//8/w38GIAXDIBKE0DHxgljNBAAO9TXL0Y4OHwAAAABJRU5ErkJggg==' # red dot in RGBA |
| 1345 })) | |
| 1346 | |
| 1347 self.assertEqual('Jodogne', DoGet(_REMOTE, '/instances/%s/content/PatientName' % i['ID']).strip()) | |
| 1348 self.assertEqual('CT', DoGet(_REMOTE, '/instances/%s/content/Modality' % i['ID']).strip()) | |
| 1349 | |
| 1350 png = GetImage(_REMOTE, '/instances/%s/preview' % i['ID']) | |
| 1351 self.assertEqual((5, 5), png.size) | |
| 1352 | |
| 38 | 1353 j = DoGet(_REMOTE, i['Path']) |
| 1354 self.assertEqual('Instance', j['Type']) | |
| 1355 self.assertEqual(j['ID'], i['ID']) | |
| 1356 | |
| 13 | 1357 |
| 1358 def test_pilates(self): | |
| 1359 # "SCU failed error when accessing orthanc with osirix" by | |
| 1360 # Pilates Agentur (Mar 10, 2014 at 9:33 PM) | |
| 1361 i = UploadInstance(_REMOTE, 'PilatesArgenturGEUltrasoundOsiriX.dcm')['ID'] | |
| 1362 self.assertEqual(0, len(DoGet(_LOCAL, '/patients'))) | |
| 1363 j = DoPost(_REMOTE, '/modalities/orthanctest/store', str(i), 'text/plain') | |
| 1364 self.assertEqual(1, len(DoGet(_LOCAL, '/patients'))) | |
| 1365 | |
| 1366 | |
| 1367 def test_shared_tags(self): | |
| 1368 a = UploadInstance(_REMOTE, 'Knee/T1/IM-0001-0001.dcm')['ID'] | |
| 1369 b = UploadInstance(_REMOTE, 'Knee/T1/IM-0001-0002.dcm')['ID'] | |
| 1370 p = DoGet(_REMOTE, '/patients')[0] | |
| 1371 | |
| 1372 self.assertTrue('0010,0010' in DoGet(_REMOTE, '/patients/%s/shared-tags' % p)) | |
| 1373 self.assertTrue('PatientName' in DoGet(_REMOTE, '/patients/%s/shared-tags?simplify' % p)) | |
|
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1374 self.assertTrue('0010,0010' in DoGet(_REMOTE, '/patients/%s/shared-tags?short' % p)) |
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1375 |
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1376 self.assertEqual('KNEE', DoGet(_REMOTE, '/patients/%s/shared-tags' % p)['0010,0010']['Value']) |
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1377 self.assertEqual('KNEE', DoGet(_REMOTE, '/patients/%s/shared-tags?simplify' % p)['PatientName']) |
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1378 self.assertEqual('KNEE', DoGet(_REMOTE, '/patients/%s/shared-tags?short' % p)['0010,0010']) |
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1379 |
| 13 | 1380 self.assertTrue('0008,1030' in DoGet(_REMOTE, '/patients/%s/shared-tags' % p)) |
| 1381 self.assertTrue('StudyDescription' in DoGet(_REMOTE, '/patients/%s/shared-tags?simplify' % p)) | |
| 1382 self.assertTrue('0008,103e' in DoGet(_REMOTE, '/patients/%s/shared-tags' % p)) | |
| 1383 self.assertTrue('SeriesDescription' in DoGet(_REMOTE, '/patients/%s/shared-tags?simplify' % p)) | |
| 1384 self.assertFalse('0008,0018' in DoGet(_REMOTE, '/patients/%s/shared-tags' % p)) | |
| 1385 self.assertFalse('SOPInstanceUID' in DoGet(_REMOTE, '/patients/%s/shared-tags?simplify' % p)) | |
| 1386 | |
| 1387 self.assertTrue('0008,0018' in DoGet(_REMOTE, '/instances/%s/tags' % a)) | |
| 1388 self.assertTrue('SOPInstanceUID' in DoGet(_REMOTE, '/instances/%s/tags?simplify' % a)) | |
| 1389 | |
| 1390 | |
| 1391 def test_modules(self): | |
| 1392 a = UploadInstance(_REMOTE, 'Knee/T1/IM-0001-0001.dcm')['ID'] | |
| 1393 p = DoGet(_REMOTE, '/patients')[0] | |
| 1394 s = DoGet(_REMOTE, '/studies')[0] | |
| 1395 t = DoGet(_REMOTE, '/series')[0] | |
| 1396 | |
| 1397 self.assertTrue('0010,0010' in DoGet(_REMOTE, '/patients/%s/module' % p)) | |
| 1398 self.assertTrue('PatientName' in DoGet(_REMOTE, '/patients/%s/module?simplify' % p)) | |
| 1399 self.assertTrue('0010,0010' in DoGet(_REMOTE, '/studies/%s/module-patient' % p)) | |
| 1400 self.assertTrue('PatientName' in DoGet(_REMOTE, '/studies/%s/module-patient?simplify' % p)) | |
| 1401 self.assertTrue('0008,1030' in DoGet(_REMOTE, '/studies/%s/module' % s)) | |
| 1402 self.assertTrue('StudyDescription' in DoGet(_REMOTE, '/studies/%s/module?simplify' % s)) | |
| 1403 self.assertTrue('0008,103e' in DoGet(_REMOTE, '/series/%s/module' % p)) | |
| 1404 self.assertTrue('SeriesDescription' in DoGet(_REMOTE, '/series/%s/module?simplify' % p)) | |
| 1405 self.assertTrue('0008,0018' in DoGet(_REMOTE, '/instances/%s/module' % a)) | |
| 1406 self.assertTrue('SOPInstanceUID' in DoGet(_REMOTE, '/instances/%s/module?simplify' % a)) | |
| 1407 | |
| 1408 | |
| 1409 def test_auto_directory(self): | |
| 1410 a = UploadInstance(_REMOTE, 'Knee/T1/IM-0001-0001.dcm')['ID'] | |
| 1411 self.assertTrue('now' in DoGet(_REMOTE, '/tools')) | |
| 1412 self.assertTrue('dicom-conformance' in DoGet(_REMOTE, '/tools')) | |
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1413 self.assertTrue('invalidate-tags' in DoGet(_REMOTE, '/tools')) |
| 13 | 1414 self.assertTrue(len(DoGet(_REMOTE, '/tools/dicom-conformance')) > 1000) |
| 1415 self.assertTrue('orthanctest' in DoGet(_REMOTE, '/modalities')) | |
| 1416 self.assertTrue('echo' in DoGet(_REMOTE, '/modalities/orthanctest')) | |
| 1417 self.assertTrue('find' in DoGet(_REMOTE, '/modalities/orthanctest')) | |
| 1418 self.assertTrue('find-instance' in DoGet(_REMOTE, '/modalities/orthanctest')) | |
| 1419 self.assertTrue('find-patient' in DoGet(_REMOTE, '/modalities/orthanctest')) | |
| 1420 self.assertTrue('find-series' in DoGet(_REMOTE, '/modalities/orthanctest')) | |
| 1421 self.assertTrue('find-study' in DoGet(_REMOTE, '/modalities/orthanctest')) | |
| 1422 self.assertTrue('store' in DoGet(_REMOTE, '/modalities/orthanctest')) | |
| 1423 self.assertTrue('store' in DoGet(_REMOTE, '/peers/peer')) | |
| 1424 self.assertTrue('matlab' in DoGet(_REMOTE, '/instances/%s/frames/0' % a)) | |
| 79 | 1425 self.assertTrue('raw' in DoGet(_REMOTE, '/instances/%s/frames/0' % a)) |
| 13 | 1426 self.assertRaises(Exception, lambda: DoGet(_REMOTE, '/tools/nope')) |
| 28 | 1427 self.assertRaises(Exception, lambda: DoGet(_REMOTE, '/nope')) |
| 1428 self.assertRaises(Exception, lambda: DoGet(_REMOTE, '/nope/nope.html')) | |
| 1429 self.assertEqual(404, DoGetRaw(_REMOTE, '/nope')[0].status) | |
| 1430 self.assertEqual(404, DoGetRaw(_REMOTE, '/nope/nope.html')[0].status) | |
| 13 | 1431 |
| 1432 | |
| 1433 def test_echo(self): | |
| 1434 DoPost(_REMOTE, '/modalities/orthanctest/echo') | |
| 1435 | |
| 1436 | |
| 1437 def test_xml(self): | |
| 1438 json = DoGet(_REMOTE, '/tools', headers = { 'accept' : 'application/json' }) | |
| 1439 xml = minidom.parseString(DoGet(_REMOTE, '/tools', headers = { 'accept' : 'application/xml' })) | |
| 1440 items = xml.getElementsByTagName('root')[0].getElementsByTagName('item') | |
| 1441 self.assertEqual(len(items), len(json)) | |
| 1442 | |
| 1443 self.assertTrue('dicom-conformance' in json) | |
| 1444 | |
| 1445 ok = False | |
| 1446 for i in items: | |
| 1447 if i.childNodes[0].data == 'dicom-conformance': | |
| 1448 ok = True | |
| 1449 self.assertTrue(ok) | |
| 1450 | |
| 1451 | |
|
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1452 def test_googlecode_issue_16(self): |
| 13 | 1453 i = UploadInstance(_REMOTE, 'Issue16.dcm')['ID'] |
| 1454 t = DoGet(_REMOTE, '/instances/%s/tags?simplify' % i)['FrameIncrementPointer'] | |
| 1455 self.assertEqual('0018,1063', t) | |
| 1456 | |
| 1457 | |
|
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1458 def test_googlecode_issue_22(self): |
| 13 | 1459 s = UploadInstance(_REMOTE, 'Issue22.dcm')['ID'] |
| 1460 a = [ | |
| 1461 "f804691f62197040438f4627c6b994f1", # Frame 0 | |
| 1462 "c69eee9a51eea3e8611e82e578897254", | |
| 1463 "315666be83e2d0111c77bc0996d84901", | |
| 1464 "3e27aa959d911172c48a1436443c72b1", | |
| 1465 "958642c9e7e9d232d3869faff546058c", | |
| 1466 "5e7ea8e3e4230cae707d143481355c59", | |
| 1467 "eda37f83558d858a596175aed8b2ad47", | |
| 1468 "486713bd2895c4ecbe0e97715ac7f80a", | |
| 1469 "091ef729eb169e67da8a0faa9631f9a8", | |
| 1470 "5aa2b8c7ffe0a483efaa8e12417686ca", | |
| 1471 "e2f39e85896fe58876654b94cd0b5013", | |
| 1472 "6fd2129e4950abbe1be053bc814d5da8", | |
| 1473 "c3331a8ba7a757f3d423735ab7fa81f9", | |
| 1474 "746f808582156734dd6b6fdfd3a0b72c", | |
| 1475 "8075ea2b227a70c60ea6b7b75a6bb190", | |
| 1476 "806b8b3e300c615099c11a5ec23465aa", | |
| 1477 "7c836aa298ba6eef96434579af631a11", | |
| 1478 "a0357dc9f4f72d73a885c33d7c287446", | |
| 1479 "f25ba3be1cc7d7fad95706adc199ea7d", | |
| 1480 "8b114c526b8cbed6cad8a3248b7b480c", | |
| 1481 "44e6670f127e612a2b4aa60a0d207698", | |
| 1482 "b8945f90fe02facf2ace24ca1ecbe0a5", | |
| 1483 "95c796c2fa8f59018b15cf2987b1f79b", | |
| 1484 "ce0a51ab30224205b44920221dc27351", # Frame 23 | |
| 1485 ] | |
| 1486 | |
| 1487 self.assertEqual(24, len(DoGet(_REMOTE, '/instances/%s/frames' % s))) | |
| 1488 self.assertRaises(Exception, lambda: DoGet(_REMOTE, '/instances/%s/frames/24/preview' % s)) | |
| 1489 | |
| 1490 for i in range(len(a)): | |
| 1491 self.assertEqual(a[i], ComputeMD5(DoGet(_REMOTE, '/instances/%s/frames/%d/preview' % (s, i)))) | |
| 1492 | |
| 1493 | |
|
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1494 def test_googlecode_issue_19(self): |
|
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tests of image decoding
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|
1495 # This is an image with "YBR_FULL" photometric interpretation, it is not supported by Orthanc |
| 13 | 1496 # gdcmconv -i /home/jodogne/DICOM/GdcmDatabase/US_DataSet/HDI5000_US/3EAF5E01 -w -o Issue19.dcm |
| 1497 | |
| 1498 a = UploadInstance(_REMOTE, 'Issue19.dcm')['ID'] | |
|
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|
1499 self.assertRaises(Exception, lambda: DoGet(_REMOTE, '/instances/941ad3c8-05d05b88-560459f9-0eae0e20-6cddd533/preview')) |
| 13 | 1500 |
| 1501 | |
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1502 def test_googlecode_issue_37(self): |
| 13 | 1503 # Same test for issues 35 and 37. Fixed in Orthanc 0.9.1 |
| 1504 u = UploadInstance(_REMOTE, 'Beaufix/IM-0001-0001.dcm')['ID'] | |
| 1505 | |
| 1506 a = DoPost(_REMOTE, '/tools/find', { 'Level' : 'Series', | |
| 1507 'CaseSensitive' : True, | |
| 1508 'Query' : { 'StationName' : 'SMR4-MP3' }}) | |
| 1509 self.assertEqual(1, len(a)) | |
| 14 | 1510 |
| 1511 | |
| 1512 def test_rest_find(self): | |
| 1513 # Upload 8 instances | |
| 1514 for i in range(2): | |
| 1515 UploadInstance(_REMOTE, 'Brainix/Flair/IM-0001-000%d.dcm' % (i + 1)) | |
| 1516 UploadInstance(_REMOTE, 'Brainix/Epi/IM-0001-000%d.dcm' % (i + 1)) | |
| 1517 UploadInstance(_REMOTE, 'Knee/T1/IM-0001-000%d.dcm' % (i + 1)) | |
| 1518 UploadInstance(_REMOTE, 'Knee/T2/IM-0001-000%d.dcm' % (i + 1)) | |
| 1519 | |
| 1520 a = DoPost(_REMOTE, '/tools/find', { 'Level' : 'Patient', | |
| 1521 'CaseSensitive' : False, | |
| 1522 'Query' : { 'PatientName' : '*n*' }}) | |
| 1523 self.assertEqual(2, len(a)) | |
| 1524 | |
| 1525 a = DoPost(_REMOTE, '/tools/find', { 'Level' : 'Patient', | |
| 1526 'CaseSensitive' : True, | |
| 1527 'Query' : { 'PatientName' : '*n*' }}) | |
| 1528 self.assertEqual(0, len(a)) | |
| 1529 | |
| 1530 a = DoPost(_REMOTE, '/tools/find', { 'Expand' : True, | |
| 1531 'Level' : 'Patient', | |
| 1532 'CaseSensitive' : False, | |
| 1533 'Query' : { 'PatientName' : '*ne*' }}) | |
| 1534 self.assertEqual(1, len(a)) | |
| 1535 self.assertEqual('20080822', a[0]['MainDicomTags']['PatientBirthDate']) | |
| 1536 | |
| 1537 a = DoPost(_REMOTE, '/tools/find', { 'Level' : 'Patient', | |
| 1538 'CaseSensitive' : True, | |
| 1539 'Query' : { 'PatientName' : '*ne*' }}) | |
| 1540 self.assertEqual(0, len(a)) | |
| 1541 | |
| 1542 a = DoPost(_REMOTE, '/tools/find', { 'Level' : 'Study', | |
| 1543 'CaseSensitive' : True, | |
| 1544 'Query' : { 'PatientName' : '*NE*' }}) | |
| 1545 self.assertEqual(1, len(a)) | |
| 1546 | |
| 1547 a = DoPost(_REMOTE, '/tools/find', { 'Level' : 'Series', | |
| 1548 'CaseSensitive' : True, | |
| 1549 'Query' : { 'PatientName' : '*NE*' }}) | |
| 1550 self.assertEqual(2, len(a)) | |
| 1551 | |
| 1552 a = DoPost(_REMOTE, '/tools/find', { 'Level' : 'Instance', | |
| 1553 'CaseSensitive' : True, | |
| 1554 'Query' : { 'PatientName' : '*NE*' }}) | |
| 1555 self.assertEqual(4, len(a)) | |
| 1556 | |
| 1557 a = DoPost(_REMOTE, '/tools/find', { 'Level' : 'Patient', 'Query' : { }}) | |
| 1558 self.assertEqual(2, len(a)) | |
| 1559 | |
| 1560 a = DoPost(_REMOTE, '/tools/find', { 'Level' : 'Study', 'Query' : { }}) | |
| 1561 self.assertEqual(2, len(a)) | |
| 1562 | |
| 1563 a = DoPost(_REMOTE, '/tools/find', { 'Level' : 'Series', 'Query' : { }}) | |
| 1564 self.assertEqual(4, len(a)) | |
| 1565 | |
| 1566 a = DoPost(_REMOTE, '/tools/find', { 'Level' : 'Instance', 'Query' : { }}) | |
| 1567 self.assertEqual(8, len(a)) | |
| 1568 | |
| 1569 | |
| 1570 def test_rest_query_retrieve(self): | |
| 1571 self.assertEqual(0, len(DoGet(_REMOTE, '/patients'))) | |
| 1572 | |
| 1573 # Upload 8 instances | |
| 1574 for i in range(2): | |
| 1575 UploadInstance(_REMOTE, 'Brainix/Flair/IM-0001-000%d.dcm' % (i + 1)) | |
| 1576 UploadInstance(_REMOTE, 'Brainix/Epi/IM-0001-000%d.dcm' % (i + 1)) | |
| 1577 UploadInstance(_REMOTE, 'Knee/T1/IM-0001-000%d.dcm' % (i + 1)) | |
| 1578 UploadInstance(_REMOTE, 'Knee/T2/IM-0001-000%d.dcm' % (i + 1)) | |
| 1579 | |
| 1580 self.assertEqual(2, len(DoGet(_REMOTE, '/patients'))) | |
| 1581 for p in DoGet(_REMOTE, '/patients'): | |
| 1582 DoPost(_REMOTE, '/modalities/orthanctest/store', p) | |
| 1583 DoDelete(_REMOTE, '/patients/%s' % p) | |
| 1584 | |
| 1585 for q in DoGet(_REMOTE, '/queries'): | |
| 1586 DoDelete(_REMOTE, '/queries/%s' % q) | |
| 1587 | |
| 1588 self.assertEqual(0, len(DoGet(_REMOTE, '/patients'))) | |
| 1589 self.assertEqual(0, len(DoGet(_REMOTE, '/queries'))) | |
| 1590 a = DoPost(_REMOTE, '/modalities/orthanctest/query', { 'Level' : 'Series', | |
| 27 | 1591 'Query' : { |
| 1592 'PatientName' : '*NE*', | |
| 1593 'StudyDate' : '*', | |
| 1594 }})['ID'] | |
| 14 | 1595 self.assertEqual(1, len(DoGet(_REMOTE, '/queries'))) |
| 1596 | |
| 1597 b = DoGet(_REMOTE, '/queries/%s' % a) | |
| 1598 self.assertTrue('answers' in b) | |
| 1599 self.assertTrue('level' in b) | |
| 1600 self.assertTrue('modality' in b) | |
| 1601 self.assertTrue('query' in b) | |
| 1602 self.assertTrue('retrieve' in b) | |
| 1603 self.assertEqual('Series', DoGet(_REMOTE, '/queries/%s/level' % a)) | |
| 1604 self.assertEqual('orthanctest', DoGet(_REMOTE, '/queries/%s/modality' % a)) | |
| 1605 | |
| 1606 q = DoGet(_REMOTE, '/queries/%s/query?simplify' % a) | |
| 27 | 1607 self.assertEqual(2, len(q)) |
| 14 | 1608 self.assertTrue('PatientName' in q) |
| 27 | 1609 self.assertTrue('StudyDate' in q) |
| 14 | 1610 self.assertEqual('*NE*', q['PatientName']) |
| 27 | 1611 self.assertEqual('*', q['StudyDate']) |
| 14 | 1612 |
| 1613 self.assertEqual(2, len(DoGet(_REMOTE, '/queries/%s/answers' % a))) | |
| 1614 | |
| 1615 s = DoGet(_REMOTE, '/queries/%s/answers/0' % a) | |
| 1616 self.assertTrue('content' in s) | |
| 1617 self.assertTrue('retrieve' in s) | |
| 1618 | |
| 1619 s = DoGet(_REMOTE, '/queries/%s/answers/0/content?simplify' % a) | |
| 1620 self.assertEqual('887', s['PatientID']) | |
| 1621 self.assertEqual('2.16.840.1.113669.632.20.121711.10000160881', s['StudyInstanceUID']) | |
| 1622 | |
| 1623 self.assertEqual(0, len(DoGet(_REMOTE, '/patients'))) | |
| 1624 DoPost(_REMOTE, '/queries/%s/answers/0/retrieve' % a, 'ORTHANC') | |
| 1625 self.assertEqual(1, len(DoGet(_REMOTE, '/patients'))) | |
| 1626 self.assertEqual(1, len(DoGet(_REMOTE, '/studies'))) | |
| 1627 self.assertEqual(1, len(DoGet(_REMOTE, '/series'))) | |
| 1628 self.assertEqual(2, len(DoGet(_REMOTE, '/instances'))) | |
| 1629 | |
| 112 | 1630 DoPost(_REMOTE, '/queries/%s/answers/1/retrieve' % a, 'ORTHANC', 'application/json') # make sure the issue #36 is fixed (query/retrieve Rest API: /retrieve route shall accept application/json content type) |
| 14 | 1631 self.assertEqual(1, len(DoGet(_REMOTE, '/patients'))) |
| 1632 self.assertEqual(1, len(DoGet(_REMOTE, '/studies'))) | |
| 1633 self.assertEqual(2, len(DoGet(_REMOTE, '/series'))) | |
| 1634 self.assertEqual(4, len(DoGet(_REMOTE, '/instances'))) | |
| 1635 | |
| 1636 DoDelete(_REMOTE, '/queries/%s' % a) | |
| 1637 self.assertEqual(0, len(DoGet(_REMOTE, '/queries'))) | |
| 1638 | |
| 1639 | |
| 1640 def test_parent(self): | |
| 1641 u = UploadInstance(_REMOTE, 'DummyCT.dcm')['ID'] | |
| 1642 patient = '6816cb19-844d5aee-85245eba-28e841e6-2414fae2' | |
| 1643 study = 'b9c08539-26f93bde-c81ab0d7-bffaf2cb-a4d0bdd0' | |
| 1644 series = 'f2635388-f01d497a-15f7c06b-ad7dba06-c4c599fe' | |
| 1645 instance = '66a662ce-7430e543-bad44d47-0dc5a943-ec7a538d' | |
|
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1646 self.assertEqual(instance, u) |
| 14 | 1647 |
| 1648 a = DoGet(_REMOTE, '/studies/%s/patient' % study) | |
| 1649 self.assertEqual('Patient', a['Type']) | |
| 1650 self.assertEqual(patient, a['ID']) | |
| 1651 | |
| 1652 a = DoGet(_REMOTE, '/series/%s/patient' % series) | |
| 1653 self.assertEqual('Patient', a['Type']) | |
| 1654 self.assertEqual(patient, a['ID']) | |
| 1655 | |
| 1656 a = DoGet(_REMOTE, '/series/%s/study' % series) | |
| 1657 self.assertEqual('Study', a['Type']) | |
| 1658 self.assertEqual(study, a['ID']) | |
| 1659 | |
| 1660 a = DoGet(_REMOTE, '/instances/%s/patient' % instance) | |
| 1661 self.assertEqual('Patient', a['Type']) | |
| 1662 self.assertEqual(patient, a['ID']) | |
| 1663 | |
| 1664 a = DoGet(_REMOTE, '/instances/%s/study' % instance) | |
| 1665 self.assertEqual('Study', a['Type']) | |
| 1666 self.assertEqual(study, a['ID']) | |
| 1667 | |
| 1668 a = DoGet(_REMOTE, '/instances/%s/series' % instance) | |
| 1669 self.assertEqual('Series', a['Type']) | |
| 1670 self.assertEqual(series, a['ID']) | |
| 1671 | |
| 1672 | |
| 1673 def test_shanon(self): | |
| 1674 def Anonymize(instance, replacements = {}): | |
| 119 | 1675 return DoPost(_REMOTE, '/instances/%s/anonymize' % instance, { |
| 1676 'Replace' : replacements, | |
| 1677 'Force' : True, | |
| 1678 }, 'application/json') | |
| 14 | 1679 |
| 1680 self.assertEqual(0, len(DoGet(_REMOTE, '/instances'))) | |
| 1681 u = UploadInstance(_REMOTE, 'DummyCT.dcm')['ID'] | |
| 1682 self.assertEqual(1, len(DoGet(_REMOTE, '/instances'))) | |
| 1683 | |
| 1684 tags = [ 'PatientID', 'StudyInstanceUID', 'SeriesInstanceUID', 'SOPInstanceUID', 'DeidentificationMethod' ] | |
| 1685 ids = [ 'ozp00SjY2xG', | |
| 1686 '1.2.840.113619.2.176.2025.1499492.7391.1171285944.390', | |
| 1687 '1.2.840.113619.2.176.2025.1499492.7391.1171285944.394', | |
| 1688 '1.2.840.113619.2.176.2025.1499492.7040.1171286242.109' ] | |
| 1689 | |
| 1690 a = ExtractDicomTags(Anonymize(u), tags) | |
| 1691 for i in range(4): | |
| 1692 self.assertNotEqual(ids[i], a[i]) | |
| 1693 self.assertTrue(a[4].startswith('Orthanc')) | |
| 1694 | |
| 1695 a = ExtractDicomTags(Anonymize(u, { 'PatientName' : 'toto' }), tags) | |
| 1696 for i in range(4): | |
| 1697 self.assertNotEqual(ids[i], a[i]) | |
| 1698 self.assertFalse(a[4].startswith('Orthanc')) | |
| 1699 | |
| 1700 a = ExtractDicomTags(Anonymize(u, { 'SOPInstanceUID' : 'instance' }), tags) | |
| 1701 self.assertEqual('instance', a[3]) | |
| 1702 self.assertFalse(a[4].startswith('Orthanc')) | |
| 1703 | |
| 1704 a = ExtractDicomTags(Anonymize(u, { 'SeriesInstanceUID' : 'series' }), tags) | |
| 1705 self.assertEqual('series', a[2]) | |
| 1706 self.assertFalse(a[4].startswith('Orthanc')) | |
| 1707 | |
| 1708 a = ExtractDicomTags(Anonymize(u, { 'StudyInstanceUID' : 'study' }), tags) | |
| 1709 self.assertEqual('study', a[1]) | |
| 1710 self.assertFalse(a[4].startswith('Orthanc')) | |
| 1711 | |
| 1712 a = ExtractDicomTags(Anonymize(u, { 'PatientID' : 'patient' }), tags) | |
| 1713 self.assertEqual('patient', a[0]) | |
| 1714 self.assertFalse(a[4].startswith('Orthanc')) | |
| 1715 | |
| 1716 a = ExtractDicomTags(Anonymize(u, { 'PatientID' : 'patient', | |
| 1717 'StudyInstanceUID' : 'study', | |
| 1718 'SeriesInstanceUID' : 'series', | |
| 1719 'SOPInstanceUID' : 'instance' }), tags) | |
| 1720 self.assertEqual('patient', a[0]) | |
| 1721 self.assertFalse(a[4].startswith('Orthanc')) | |
| 1722 | |
| 1723 self.assertEqual(1, len(DoGet(_REMOTE, '/instances'))) | |
| 1724 | |
| 1725 | |
| 1726 def test_shanon_2(self): | |
| 1727 def Modify(instance, replacements = {}): | |
| 119 | 1728 return DoPost(_REMOTE, '/instances/%s/modify' % instance, { |
| 1729 'Replace' : replacements, | |
| 1730 'Force': True, | |
| 1731 }, 'application/json') | |
| 14 | 1732 |
| 1733 self.assertEqual(0, len(DoGet(_REMOTE, '/instances'))) | |
| 1734 u = UploadInstance(_REMOTE, 'DummyCT.dcm')['ID'] | |
| 1735 self.assertEqual(1, len(DoGet(_REMOTE, '/instances'))) | |
| 1736 | |
| 1737 tags = [ 'PatientID', 'StudyInstanceUID', 'SeriesInstanceUID', 'SOPInstanceUID', 'DeidentificationMethod' ] | |
| 1738 ids = [ 'ozp00SjY2xG', | |
| 1739 '1.2.840.113619.2.176.2025.1499492.7391.1171285944.390', | |
| 1740 '1.2.840.113619.2.176.2025.1499492.7391.1171285944.394', | |
| 1741 '1.2.840.113619.2.176.2025.1499492.7040.1171286242.109' ] | |
| 1742 | |
| 1743 a = ExtractDicomTags(Modify(u), tags) | |
| 1744 self.assertEqual(ids[0], a[0]) | |
| 1745 self.assertEqual(ids[1], a[1]) | |
| 1746 self.assertEqual(ids[2], a[2]) | |
| 1747 self.assertNotEqual(ids[3], a[3]) | |
| 1748 self.assertEqual(0, len(a[4])) | |
| 1749 | |
| 1750 a = ExtractDicomTags(Modify(u, { 'SOPInstanceUID' : 'instance' }), tags) | |
| 1751 self.assertEqual(ids[0], a[0]) | |
| 1752 self.assertEqual(ids[1], a[1]) | |
| 1753 self.assertEqual(ids[2], a[2]) | |
| 1754 self.assertEqual('instance', a[3]) | |
| 1755 | |
| 1756 a = ExtractDicomTags(Modify(u, { 'SeriesInstanceUID' : 'series' }), tags) | |
| 1757 self.assertEqual(ids[0], a[0]) | |
| 1758 self.assertEqual(ids[1], a[1]) | |
| 1759 self.assertEqual('series', a[2]) | |
| 1760 self.assertNotEqual(ids[3], a[3]) | |
| 1761 | |
| 1762 a = ExtractDicomTags(Modify(u, { 'StudyInstanceUID' : 'study' }), tags) | |
| 1763 self.assertEqual(ids[0], a[0]) | |
| 1764 self.assertEqual('study', a[1]) | |
| 1765 self.assertNotEqual(ids[2], a[2]) | |
| 1766 self.assertNotEqual(ids[3], a[3]) | |
| 1767 | |
| 1768 a = ExtractDicomTags(Modify(u, { 'PatientID' : 'patient' }), tags) | |
| 1769 self.assertEqual('patient', a[0]) | |
| 1770 self.assertNotEqual(ids[1], a[1]) | |
| 1771 self.assertNotEqual(ids[2], a[2]) | |
| 1772 self.assertNotEqual(ids[3], a[3]) | |
| 1773 | |
| 1774 a = ExtractDicomTags(Modify(u, { 'PatientID' : 'patient', | |
| 1775 'StudyInstanceUID' : 'study', | |
| 1776 'SeriesInstanceUID' : 'series', | |
| 1777 'SOPInstanceUID' : 'instance' }), tags) | |
| 1778 self.assertEqual('patient', a[0]) | |
| 1779 self.assertEqual('study', a[1]) | |
| 1780 self.assertEqual('series', a[2]) | |
| 1781 self.assertEqual('instance', a[3]) | |
| 1782 | |
| 1783 self.assertEqual(1, len(DoGet(_REMOTE, '/instances'))) | |
| 1784 | |
| 1785 | |
| 1786 def test_instances_tags(self): | |
| 1787 a = UploadInstance(_REMOTE, 'Knee/T1/IM-0001-0001.dcm')['ID'] | |
| 1788 b = UploadInstance(_REMOTE, 'Knee/T2/IM-0001-0001.dcm')['ID'] | |
| 1789 #a = UploadInstance(_REMOTE, 'Cardiac/MR.X.1.2.276.0.7230010.3.1.4.2831157719.2256.1336386937.676343')['ID'] | |
| 1790 #b = UploadInstance(_REMOTE, 'Cardiac/MR.X.1.2.276.0.7230010.3.1.4.2831157719.2256.1336386925.676329')['ID'] | |
| 1791 | |
| 1792 i = DoGet(_REMOTE, '/patients/%s/instances-tags?simplify' % DoGet(_REMOTE, '/patients')[0]) | |
| 1793 self.assertEqual(2, len(i)) | |
| 1794 self.assertEqual('887', i[i.keys()[0]]['PatientID']) | |
| 1795 self.assertEqual('887', i[i.keys()[1]]['PatientID']) | |
| 1796 | |
| 1797 i = DoGet(_REMOTE, '/patients/%s/instances-tags?simplify' % DoGet(_REMOTE, '/studies')[0]) | |
| 1798 self.assertEqual(2, len(i)) | |
| 1799 self.assertEqual('887', i[i.keys()[0]]['PatientID']) | |
| 1800 self.assertEqual('887', i[i.keys()[1]]['PatientID']) | |
| 1801 | |
| 1802 self.assertEqual(2, len(DoGet(_REMOTE, '/series'))) | |
| 1803 i = DoGet(_REMOTE, '/patients/%s/instances-tags?simplify' % DoGet(_REMOTE, '/series')[0]) | |
| 1804 self.assertEqual(1, len(i)) | |
| 1805 self.assertEqual('887', i[i.keys()[0]]['PatientID']) | |
| 1806 | |
| 1807 i = DoGet(_REMOTE, '/patients/%s/instances-tags?simplify' % DoGet(_REMOTE, '/series')[1]) | |
| 1808 self.assertEqual(1, len(i)) | |
| 1809 self.assertEqual('887', i[i.keys()[0]]['PatientID']) | |
| 1810 | |
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1811 i = DoGet(_REMOTE, '/patients/%s/instances-tags?short' % DoGet(_REMOTE, '/series')[1]) |
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1812 self.assertEqual(1, len(i)) |
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1813 self.assertEqual('887', i[i.keys()[0]]['0010,0020']) |
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1814 |
| 14 | 1815 |
| 1816 def test_lookup(self): | |
| 1817 a = DoPost(_REMOTE, '/tools/lookup', 'ozp00SjY2xG') | |
| 1818 self.assertEqual(0, len(a)) | |
| 1819 | |
| 1820 UploadInstance(_REMOTE, 'DummyCT.dcm') | |
| 1821 | |
| 1822 a = DoPost(_REMOTE, '/tools/lookup', 'ozp00SjY2xG') | |
| 1823 self.assertEqual(1, len(a)) | |
| 1824 self.assertEqual('Patient', a[0]['Type']) | |
| 1825 self.assertEqual('6816cb19-844d5aee-85245eba-28e841e6-2414fae2', a[0]['ID']) | |
| 1826 self.assertEqual('/patients/%s' % a[0]['ID'], a[0]['Path']) | |
| 1827 | |
| 1828 a = DoPost(_REMOTE, '/tools/lookup', '1.2.840.113619.2.176.2025.1499492.7391.1171285944.390') | |
| 1829 self.assertEqual(1, len(a)) | |
| 1830 self.assertEqual('Study', a[0]['Type']) | |
| 1831 self.assertEqual('b9c08539-26f93bde-c81ab0d7-bffaf2cb-a4d0bdd0', a[0]['ID']) | |
| 1832 self.assertEqual('/studies/%s' % a[0]['ID'], a[0]['Path']) | |
| 1833 | |
| 1834 a = DoPost(_REMOTE, '/tools/lookup', '1.2.840.113619.2.176.2025.1499492.7391.1171285944.394') | |
| 1835 self.assertEqual(1, len(a)) | |
| 1836 self.assertEqual('Series', a[0]['Type']) | |
| 1837 self.assertEqual('f2635388-f01d497a-15f7c06b-ad7dba06-c4c599fe', a[0]['ID']) | |
| 1838 self.assertEqual('/series/%s' % a[0]['ID'], a[0]['Path']) | |
| 1839 | |
| 1840 a = DoPost(_REMOTE, '/tools/lookup', '1.2.840.113619.2.176.2025.1499492.7040.1171286242.109') | |
| 1841 self.assertEqual(1, len(a)) | |
| 1842 self.assertEqual('Instance', a[0]['Type']) | |
| 1843 self.assertEqual('66a662ce-7430e543-bad44d47-0dc5a943-ec7a538d', a[0]['ID']) | |
| 1844 self.assertEqual('/instances/%s' % a[0]['ID'], a[0]['Path']) | |
| 1845 | |
| 1846 DropOrthanc(_REMOTE) | |
| 1847 a = DoPost(_REMOTE, '/tools/lookup', '3113719P') | |
| 1848 self.assertEqual(0, len(a)) | |
| 1849 | |
| 15 | 1850 |
| 1851 def test_autorouting(self): | |
| 1852 knee1 = 'Knee/T1/IM-0001-0001.dcm' | |
| 1853 knee2 = 'Knee/T2/IM-0001-0002.dcm' | |
| 1854 other = 'Brainix/Flair/IM-0001-0001.dcm' | |
| 1855 | |
| 1856 # Check that this version is >= 0.8.0 | |
| 1857 self.assertTrue(IsDefinedInLua(_REMOTE, '_InitializeJob')) | |
| 1858 self.assertTrue('orthanctest' in DoGet(_REMOTE, '/modalities')) | |
| 1859 | |
| 1860 UploadInstance(_REMOTE, knee1) | |
| 1861 self.assertEqual(0, len(DoGet(_LOCAL, '/instances'))) | |
| 1862 | |
| 1863 DropOrthanc(_REMOTE) | |
| 1864 DropOrthanc(_LOCAL) | |
| 1865 InstallLuaScript('Lua/Autorouting.lua') | |
| 1866 UploadInstance(_REMOTE, knee1) | |
| 1867 UploadInstance(_REMOTE, knee2) | |
| 1868 UploadInstance(_REMOTE, other) | |
| 1869 WaitEmpty(_REMOTE) | |
| 1870 UninstallLuaCallbacks() | |
| 1871 self.assertEqual(3, len(DoGet(_LOCAL, '/instances'))) | |
| 1872 | |
| 1873 DropOrthanc(_REMOTE) | |
| 1874 DropOrthanc(_LOCAL) | |
| 1875 InstallLuaScript('Lua/AutoroutingConditional.lua') | |
| 1876 UploadInstance(_REMOTE, knee1) | |
| 1877 UploadInstance(_REMOTE, knee2) | |
| 1878 UploadInstance(_REMOTE, other) | |
| 1879 WaitEmpty(_REMOTE) | |
| 1880 UninstallLuaCallbacks() | |
| 1881 self.assertEqual(2, len(DoGet(_LOCAL, '/instances'))) | |
| 1882 | |
| 1883 DropOrthanc(_REMOTE) | |
| 1884 DropOrthanc(_LOCAL) | |
| 1885 InstallLuaScript('Lua/AutoroutingModification.lua') | |
| 1886 UploadInstance(_REMOTE, knee1) | |
| 1887 WaitEmpty(_REMOTE) | |
| 1888 UninstallLuaCallbacks() | |
| 1889 i = DoGet(_LOCAL, '/instances') | |
| 1890 self.assertEqual(1, len(i)) | |
| 1891 | |
| 1892 with tempfile.NamedTemporaryFile(delete = True) as f: | |
| 1893 f.write(DoGet(_LOCAL, '/instances/%s/file' % i[0])) | |
| 1894 f.flush() | |
| 45 | 1895 routed = subprocess.check_output([ FindExecutable('dcm2xml'), f.name ]) |
| 15 | 1896 self.assertEqual('My Medical Device', re.search('"StationName">(.*?)<', routed).group(1).strip()) |
| 1897 self.assertEqual(None, re.search('"MilitaryRank"', routed)) | |
| 1898 self.assertEqual(None, re.search('"0051,0010"', routed)) # A private tag | |
| 17 | 1899 |
| 1900 | |
| 1901 def test_storescu_rf(self): | |
| 1902 i = UploadInstance(_REMOTE, 'KarstenHilbertRF.dcm')['ID'] | |
| 1903 self.assertEqual(0, len(DoGet(_LOCAL, '/instances'))) | |
| 1904 j = DoPost(_REMOTE, '/modalities/orthanctest/store', str(i), 'text/plain') | |
| 1905 self.assertEqual(1, len(DoGet(_LOCAL, '/instances'))) | |
| 18 | 1906 |
| 1907 | |
| 1908 def test_anonymize_instance(self): | |
| 1909 def AnonymizeAndUpload(instanceId, parameters): | |
| 1910 return DoPost(_REMOTE, '/instances', DoPost(_REMOTE, '/instances/%s/anonymize' % instanceId, parameters, | |
| 1911 'application/json'), 'application/dicom')['ID'] | |
| 1912 | |
| 1913 def ModifyAndUpload(instanceId, parameters): | |
| 1914 return DoPost(_REMOTE, '/instances', DoPost(_REMOTE, '/instances/%s/modify' % instanceId, parameters, | |
| 1915 'application/json'), 'application/dicom')['ID'] | |
| 1916 | |
| 1917 a = UploadInstance(_REMOTE, 'PrivateMDNTags.dcm')['ID'] | |
| 1918 s1 = DoGet(_REMOTE, '/instances/%s/content/PatientName' % a) | |
| 1919 s2 = DoGet(_REMOTE, '/instances/%s/content/00e1-10c2' % a) # Some private tag | |
| 1920 s3 = DoGet(_REMOTE, '/instances/%s/content/StudyDescription' % a) | |
| 1921 s4 = DoGet(_REMOTE, '/instances/%s/content/SeriesDescription' % a) | |
| 1922 s5 = DoGet(_REMOTE, '/instances/%s/content/InstitutionName' % a) | |
| 1923 | |
| 1924 b = AnonymizeAndUpload(a, '{}') | |
| 1925 self.assertNotEqual(s1, DoGet(_REMOTE, '/instances/%s/content/PatientName' % b)) | |
| 1926 self.assertRaises(Exception, lambda: DoGet(_REMOTE, '/instances/%s/content/00e1-10c2' % b)) | |
| 1927 | |
| 1928 # Keep private tag (only OK since Orthanc 0.8.0) | |
| 1929 b = AnonymizeAndUpload(a, '{"Keep":["00e1-10c2"]}') | |
| 1930 self.assertNotEqual(s1, DoGet(_REMOTE, '/instances/%s/content/PatientName' % b)) | |
| 1931 self.assertEqual(s2, DoGet(_REMOTE, '/instances/%s/content/00e1-10c2' % b)) | |
| 1932 | |
| 1933 b = AnonymizeAndUpload(a, '{"Keep":["00e1,10c2","PatientName"]}') | |
| 1934 self.assertEqual(s1, DoGet(_REMOTE, '/instances/%s/content/PatientName' % b)) | |
| 1935 self.assertEqual(s2, DoGet(_REMOTE, '/instances/%s/content/00e1-10c2' % b)) | |
| 1936 | |
| 1937 b = AnonymizeAndUpload(a, '{"Keep":["PatientName"],"Replace":{"00e1,10c2":"Hello"}}') | |
| 1938 self.assertEqual(s1, DoGet(_REMOTE, '/instances/%s/content/PatientName' % b)) | |
| 1939 self.assertTrue(DoGet(_REMOTE, '/instances/%s/content/00e1-10c2' % b).startswith('Hello')) | |
| 1940 | |
| 1941 # Examples from the Wiki | |
|
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1942 b = AnonymizeAndUpload(a, '{"Replace":{"PatientName":"hello","0010-0020":"world"},"Keep":["StudyDescription", "SeriesDescription"],"KeepPrivateTags": true,"Force":true}') |
| 18 | 1943 self.assertEqual('hello', DoGet(_REMOTE, '/instances/%s/content/0010-0010' % b).strip()) |
| 1944 self.assertEqual('world', DoGet(_REMOTE, '/instances/%s/content/PatientID' % b).strip()) | |
| 1945 self.assertEqual(s3, DoGet(_REMOTE, '/instances/%s/content/0008,1030' % b)) | |
| 1946 self.assertEqual(s4, DoGet(_REMOTE, '/instances/%s/content/0008,103e' % b)) | |
| 1947 self.assertEqual(s4, DoGet(_REMOTE, '/instances/%s/content/0008-103E' % b)) | |
| 1948 self.assertEqual(s2, DoGet(_REMOTE, '/instances/%s/content/00e1-10c2' % b)) | |
| 1949 DoGet(_REMOTE, '/instances/%s/content/InstitutionName' % a) | |
| 1950 self.assertRaises(Exception, lambda: DoGet(_REMOTE, '/instances/%s/content/InstitutionName' % b)) | |
| 1951 | |
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1952 b = ModifyAndUpload(a, '{"Replace":{"PatientName":"hello","PatientID":"world"},"Remove":["InstitutionName"],"RemovePrivateTags": true,"Force":true}') |
| 18 | 1953 self.assertEqual('hello', DoGet(_REMOTE, '/instances/%s/content/0010-0010' % b).strip()) |
| 1954 self.assertEqual('world', DoGet(_REMOTE, '/instances/%s/content/PatientID' % b).strip()) | |
| 1955 self.assertEqual(s3, DoGet(_REMOTE, '/instances/%s/content/0008,1030' % b)) | |
| 1956 self.assertEqual(s4, DoGet(_REMOTE, '/instances/%s/content/0008,103e' % b)) | |
| 1957 self.assertRaises(Exception, lambda: DoGet(_REMOTE, '/instances/%s/content/00e1-10c2' % b)) | |
| 1958 self.assertRaises(Exception, lambda: DoGet(_REMOTE, '/instances/%s/content/InstitutionName' % b)) | |
| 1959 | |
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1960 b = ModifyAndUpload(a, '{"Replace":{"PatientName":"hello","PatientID":"world"},"Force":true}') |
| 18 | 1961 self.assertEqual('hello', DoGet(_REMOTE, '/instances/%s/content/0010-0010' % b).strip()) |
| 1962 self.assertEqual('world', DoGet(_REMOTE, '/instances/%s/content/PatientID' % b).strip()) | |
| 1963 self.assertEqual(s2, DoGet(_REMOTE, '/instances/%s/content/00e1,10c2' % b)) | |
| 1964 self.assertEqual(s3, DoGet(_REMOTE, '/instances/%s/content/0008,1030' % b)) | |
| 1965 self.assertEqual(s4, DoGet(_REMOTE, '/instances/%s/content/0008-103E' % b)) | |
| 1966 self.assertEqual(s5, DoGet(_REMOTE, '/instances/%s/content/InstitutionName' % b)) | |
| 1967 | |
| 1968 | |
| 1969 # Test modify non-existing | |
| 1970 i = DoPost(_REMOTE, '/tools/create-dicom', | |
| 1971 json.dumps({ | |
| 1972 'PatientName' : 'Jodogne', | |
| 1973 'Modality' : 'CT', | |
| 1974 }))['ID'] | |
| 1975 | |
| 1976 self.assertEqual('Jodogne', DoGet(_REMOTE, '/instances/%s/content/PatientName' % i).strip()) | |
| 1977 self.assertRaises(Exception, lambda: DoGet(_REMOTE, '/instances/%s/content/StudyDescription' % i)) | |
| 1978 self.assertEqual('CT', DoGet(_REMOTE, '/instances/%s/content/Modality' % i).strip()) | |
| 1979 | |
| 1980 b = ModifyAndUpload(i, '{"Replace":{"StudyDescription":"hello","Modality":"world"}}') | |
| 1981 self.assertEqual('Jodogne', DoGet(_REMOTE, '/instances/%s/content/PatientName' % b).strip()) | |
| 1982 self.assertEqual('hello', DoGet(_REMOTE, '/instances/%s/content/StudyDescription' % b).strip()) | |
| 1983 self.assertEqual('world', DoGet(_REMOTE, '/instances/%s/content/Modality' % b).strip()) | |
| 1984 | |
|
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1985 |
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1986 def test_incoming_jpeg(self): |
|
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1987 def storescu(image, acceptUnknownSopClassUid): |
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1988 if acceptUnknownSopClassUid: |
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1989 tmp = [ '-xf', GetDatabasePath('UnknownSopClassUid.cfg'), 'Default' ] |
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1990 else: |
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1991 tmp = [ '-xs' ] |
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1992 |
|
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1993 with open(os.devnull, 'w') as FNULL: |
|
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1994 subprocess.check_call([ FindExecutable('storescu') ] + tmp + |
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1995 [ _REMOTE['Server'], str(_REMOTE['DicomPort']), |
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1996 GetDatabasePath(image) ], |
|
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1997 stderr = FNULL) |
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1998 |
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1999 self.assertEqual(0, len(DoGet(_REMOTE, '/patients'))) |
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2000 InstallLuaScript('Lua/TransferSyntaxDisable.lua') |
|
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2001 self.assertRaises(Exception, lambda: storescu('Knix/Loc/IM-0001-0001.dcm', False)) |
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2002 self.assertRaises(Exception, lambda: storescu('UnknownSopClassUid.dcm', True)) |
|
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2003 self.assertEqual(0, len(DoGet(_REMOTE, '/patients'))) |
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2004 InstallLuaScript('Lua/TransferSyntaxEnable.lua') |
|
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2005 DoPost(_REMOTE, '/tools/execute-script', "print('All special transfer syntaxes are now accepted')") |
|
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2006 storescu('Knix/Loc/IM-0001-0001.dcm', False) |
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2007 storescu('UnknownSopClassUid.dcm', True) |
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2008 self.assertEqual(2, len(DoGet(_REMOTE, '/patients'))) |
|
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2009 |
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2010 |
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2011 def test_storescu_jpeg(self): |
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2012 self.assertEqual(0, len(DoGet(_REMOTE, '/exports')['Exports'])) |
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2013 |
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2014 knixStudy = 'b9c08539-26f93bde-c81ab0d7-bffaf2cb-a4d0bdd0' |
| 64 | 2015 i = UploadInstance(_REMOTE, 'Knix/Loc/IM-0001-0001.dcm')['ID'] |
| 2016 | |
| 2017 # This is JPEG lossless | |
|
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|
2018 self.assertEqual('1.2.840.10008.1.2.4.70', DoGet(_REMOTE, '/instances/%s/header' % i)['0002,0010']['Value']) |
| 64 | 2019 self.assertEqual('1.2.840.10008.1.2.4.70', DoGet(_REMOTE, '/instances/%s/header?simplify' % i)['TransferSyntaxUID']) |
|
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2020 self.assertEqual('1.2.840.10008.1.2.4.70', DoGet(_REMOTE, '/instances/%s/header?short' % i)['0002,0010']) |
| 64 | 2021 |
|
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2022 UploadInstance(_REMOTE, 'Knix/Loc/IM-0001-0002.dcm') |
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2023 UploadInstance(_REMOTE, 'Knix/Loc/IM-0001-0003.dcm') |
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2024 |
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2025 a = UploadInstance(_REMOTE, 'Brainix/Flair/IM-0001-0001.dcm')['ID'] |
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|
2026 b = UploadInstance(_REMOTE, 'ColorTestImageJ.dcm')['ID'] |
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2027 self.assertEqual(0, len(DoGet(_LOCAL, '/instances'))) |
|
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|
2028 DoPost(_REMOTE, '/modalities/orthanctest/store', [ knixStudy, a, b ]) |
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2029 self.assertEqual(5, len(DoGet(_LOCAL, '/instances'))) |
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|
2030 |
|
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|
2031 self.assertEqual(3, len(DoGet(_REMOTE, '/exports')['Exports'])) |
|
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|
2032 |
|
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|
2033 DropOrthanc(_REMOTE) |
|
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|
2034 self.assertEqual(0, len(DoGet(_REMOTE, '/exports')['Exports'])) |
|
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|
2035 |
|
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|
2036 |
|
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|
2037 def test_pixel_data(self): |
|
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|
2038 jpeg = UploadInstance(_REMOTE, 'Knix/Loc/IM-0001-0001.dcm')['ID'] |
|
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|
2039 color = UploadInstance(_REMOTE, 'ColorTestImageJ.dcm')['ID'] |
|
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|
2040 phenix = UploadInstance(_REMOTE, 'Phenix/IM-0001-0001.dcm')['ID'] |
|
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|
2041 |
|
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|
2042 phenixSize = 358 * 512 * 2 |
|
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|
2043 colorSize = 1000 * 1000 * 3 |
|
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|
2044 jpegSize = 51918 |
|
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2045 |
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|
2046 self.assertEqual(1, len(DoGet(_REMOTE, '/instances/%s/content/7fe0-0010' % phenix))) |
|
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|
2047 self.assertEqual(1, len(DoGet(_REMOTE, '/instances/%s/content/7fe0-0010' % color))) |
|
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|
2048 self.assertEqual(2, len(DoGet(_REMOTE, '/instances/%s/content/7fe0-0010' % jpeg))) |
|
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|
2049 |
|
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|
2050 self.assertEqual(0, len(DoGet(_REMOTE, '/instances/%s/content/7fe0-0010/0' % jpeg))) |
|
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|
2051 self.assertEqual(jpegSize, len(DoGet(_REMOTE, '/instances/%s/content/7fe0-0010/1' % jpeg))) |
|
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|
2052 |
|
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|
2053 self.assertEqual(phenixSize, len(DoGet(_REMOTE, '/instances/%s/content/7fe0-0010/0' % phenix))) |
|
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|
2054 self.assertEqual(colorSize, len(DoGet(_REMOTE, '/instances/%s/content/7fe0-0010/0' % color))) |
|
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|
2055 |
|
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|
2056 |
|
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|
2057 def test_decode_brainix(self): |
|
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2058 brainix = [ |
|
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|
2059 UploadInstance(_REMOTE, 'Brainix/Epi/IM-0001-0001.dcm')['ID'], # (*) |
|
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|
2060 UploadInstance(_REMOTE, 'Formats/JpegLossless.dcm')['ID'], # JPEG-LS, same as (*) (since Orthanc 0.7.6) |
|
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|
2061 UploadInstance(_REMOTE, 'Formats/Jpeg.dcm')['ID'], # JPEG, same as (*) (since Orthanc 0.7.6) |
|
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|
2062 ] |
|
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|
2063 h = '6fb11b932d535c2be04beabd99793ff8' |
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|
2064 maxValue = 426.0 |
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|
2065 |
|
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|
2066 truth = Image.open(GetDatabasePath('Formats/Brainix.png')) |
|
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|
2067 for i in brainix: |
|
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|
2068 self.AssertSameImages(truth.getdata(), '/instances/%s/image-int16' % i) |
|
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|
2069 self.AssertSameImages(truth.getdata(), '/instances/%s/image-uint16' % i) |
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2070 |
|
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|
2071 truth2 = map(lambda x: min(255, x), truth.getdata()) |
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|
2072 for i in brainix: |
|
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2073 self.AssertSameImages(truth2, '/instances/%s/image-uint8' % i) |
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|
2074 |
|
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|
2075 truth2 = map(lambda x: x * 255.0 / maxValue, truth.getdata()) |
|
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2076 for i in brainix: |
|
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2077 self.AssertSameImages(truth2, '/instances/%s/preview' % i) |
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|
2078 |
|
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|
2079 for i in brainix: |
|
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|
2080 self.assertEqual(h, ComputeMD5(DoGet(_REMOTE, '/instances/%s/matlab' % i))) |
|
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2081 |
|
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|
2082 |
|
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diff
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|
2083 def test_decode_color(self): |
|
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2084 imagej = UploadInstance(_REMOTE, 'ColorTestImageJ.dcm')['ID'] |
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diff
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|
2085 color = UploadInstance(_REMOTE, 'ColorTestMalaterre.dcm')['ID'] |
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2086 |
|
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|
2087 for i in [ imagej, color ]: |
|
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diff
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2088 for j in [ 'image-uint8', 'image-uint16', 'image-int16' ]: |
|
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diff
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2089 self.assertRaises(Exception, lambda: DoGet(_REMOTE, '/instances/%s/%s' % (i, j))) |
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2090 |
|
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2091 self.assertEqual('c14c687f7a1ea9fe022479fc87c67274', ComputeMD5(DoGet(_REMOTE, '/instances/%s/preview' % imagej))) |
|
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diff
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|
2092 self.assertEqual('a87d122918a56f803bcfe9d2586b9125', ComputeMD5(DoGet(_REMOTE, '/instances/%s/preview' % color))) |
|
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2093 |
|
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diff
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|
2094 self.assertEqual('30cc46bfa7aba77a40e4178f6184c25a', ComputeMD5(DoGet(_REMOTE, '/instances/%s/matlab' % imagej))) |
|
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diff
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|
2095 self.assertEqual('ff195005cef06b59666fd220a9b4cd9a', ComputeMD5(DoGet(_REMOTE, '/instances/%s/matlab' % color))) |
|
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diff
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|
2096 |
|
2a29bcff60a7
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diff
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|
2097 |
|
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|
2098 def test_decode_rf(self): |
|
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parents:
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|
2099 rf = UploadInstance(_REMOTE, 'KarstenHilbertRF.dcm')['ID'] |
|
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diff
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|
2100 truth = Image.open(GetDatabasePath('Formats/KarstenHilbertRF.png')) |
|
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parents:
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diff
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|
2101 |
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|
2102 self.AssertSameImages(truth.getdata(), '/instances/%s/image-uint8' % rf) |
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2103 self.AssertSameImages(truth.getdata(), '/instances/%s/image-uint16' % rf) |
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|
2104 self.AssertSameImages(truth.getdata(), '/instances/%s/image-int16' % rf) |
|
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|
2105 self.AssertSameImages(truth.getdata(), '/instances/%s/preview' % rf) |
|
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parents:
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diff
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|
2106 |
|
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changeset
|
2107 self.assertEqual('42254d70efd2f4a1b8f3455909689f0e', ComputeMD5(DoGet(_REMOTE, '/instances/%s/matlab' % rf))) |
|
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diff
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|
2108 |
|
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18
diff
changeset
|
2109 |
|
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parents:
18
diff
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|
2110 def test_decode_multiframe(self): |
|
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parents:
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2111 mf = UploadInstance(_REMOTE, 'Multiframe.dcm')['ID'] |
|
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|
2112 |
|
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diff
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|
2113 # Test the first frame |
|
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2114 truth = Image.open(GetDatabasePath('Formats/Multiframe0.png')) |
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diff
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2115 self.AssertSameImages(truth.getdata(), '/instances/%s/image-uint8' % mf) |
|
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2116 self.AssertSameImages(truth.getdata(), '/instances/%s/image-uint16' % mf) |
|
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2117 self.AssertSameImages(truth.getdata(), '/instances/%s/image-int16' % mf) |
|
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|
2118 self.AssertSameImages(truth.getdata(), '/instances/%s/preview' % mf) |
|
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2119 self.assertEqual('9812b99d93bbcd4e7684ded089b5dfb3', ComputeMD5(DoGet(_REMOTE, '/instances/%s/matlab' % mf))) |
|
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diff
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|
2120 |
|
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|
2121 self.AssertSameImages(truth.getdata(), '/instances/%s/frames/0/image-uint16' % mf) |
|
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|
2122 |
|
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diff
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|
2123 # Test the last frame |
|
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2124 truth = Image.open(GetDatabasePath('Formats/Multiframe75.png')) |
|
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diff
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|
2125 self.AssertSameImages(truth.getdata(), '/instances/%s/frames/75/image-uint16' % mf) |
|
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diff
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|
2126 |
|
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18
diff
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|
2127 |
|
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|
2128 def test_decode_signed(self): |
|
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parents:
18
diff
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2129 signed = UploadInstance(_REMOTE, 'SignedCT.dcm')['ID'] |
|
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|
2130 minValue = -2000 |
|
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diff
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|
2131 maxValue = 4042 |
|
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18
diff
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|
2132 |
|
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diff
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|
2133 truth = Image.open(GetDatabasePath('Formats/SignedCT.png')) |
|
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18
diff
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|
2134 self.AssertSameImages(truth.getdata(), '/instances/%s/image-int16' % signed) |
|
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diff
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|
2135 |
|
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diff
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|
2136 truth2 = map(lambda x: 0 if x >= 32768 else x, truth.getdata()) |
|
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diff
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|
2137 self.AssertSameImages(truth2, '/instances/%s/image-uint16' % signed) |
|
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diff
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|
2138 |
|
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diff
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|
2139 truth3 = map(lambda x: 255 if x >= 256 else x, truth2) |
|
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parents:
18
diff
changeset
|
2140 self.AssertSameImages(truth3, '/instances/%s/image-uint8' % signed) |
|
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parents:
18
diff
changeset
|
2141 |
|
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parents:
18
diff
changeset
|
2142 tmp = map(lambda x: x - 65536 if x >= 32768 else x, truth.getdata()) |
|
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parents:
18
diff
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|
2143 tmp = map(lambda x: (255.0 * (x - minValue)) / (maxValue - minValue), tmp) |
|
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parents:
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diff
changeset
|
2144 self.AssertSameImages(tmp, '/instances/%s/preview' % signed) |
|
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parents:
18
diff
changeset
|
2145 |
|
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Sebastien Jodogne <s.jodogne@gmail.com>
parents:
18
diff
changeset
|
2146 self.assertEqual('b57e6c872a3da50877c7da689b03a444', ComputeMD5(DoGet(_REMOTE, '/instances/%s/matlab' % signed))) |
| 22 | 2147 |
| 2148 | |
|
46
85b2e36ed392
explicit GoogleCode source
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
45
diff
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|
2149 def test_googlecode_issue_32(self): |
|
92
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diff
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|
2150 self.assertRaises(Exception, lambda: DoPut(_REMOTE, '/tools/default-encoding', 'nope')) |
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diff
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|
2151 self.assertEqual('Windows1251', DoPut(_REMOTE, '/tools/default-encoding', 'Windows1251')) |
|
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parents:
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diff
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|
2152 self.assertEqual('Windows1251', DoGet(_REMOTE, '/tools/default-encoding')) |
|
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parents:
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|
2153 |
| 22 | 2154 f = UploadInstance(_REMOTE, 'Issue32.dcm')['ID'] |
| 2155 tags = DoGet(_REMOTE, '/instances/%s/tags?simplify' % f) | |
| 2156 self.assertEqual(u'Рентгенография', tags['SeriesDescription']) | |
| 2157 self.assertEqual(u'Таз', tags['BodyPartExamined']) | |
| 2158 self.assertEqual(u'Прямая', tags['ViewPosition']) | |
| 2159 | |
|
92
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parents:
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diff
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|
2160 # Replay the same test using Latin1 as default encoding: This must fail |
|
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parents:
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|
2161 self.assertEqual('Latin1', DoPut(_REMOTE, '/tools/default-encoding', 'Latin1')) |
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|
2162 |
|
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diff
changeset
|
2163 DoDelete(_REMOTE, '/instances/%s' % f) |
|
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|
2164 f = UploadInstance(_REMOTE, 'Issue32.dcm')['ID'] |
|
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diff
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|
2165 tags = DoGet(_REMOTE, '/instances/%s/tags?simplify' % f) |
|
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diff
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|
2166 self.assertNotEqual(u'Рентгенография', tags['SeriesDescription']) |
|
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|
2167 |
|
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|
2168 |
| 22 | 2169 def test_encodings(self): |
| 23 | 2170 # Latin-1 (ISO_IR 100) |
| 22 | 2171 brainix = UploadInstance(_REMOTE, 'Brainix/Epi/IM-0001-0001.dcm')['ID'] |
| 2172 tags = DoGet(_REMOTE, '/instances/%s/tags?simplify' % brainix) | |
| 2173 self.assertEqual(u'IRM cérébrale, neuro-crâne', tags['StudyDescription']) | |
| 23 | 2174 |
| 2175 # Latin-2 (ISO_IR 101) | |
| 2176 a = UploadInstance(_REMOTE, 'MarekLatin2.dcm')['ID'] | |
| 2177 i = DoGet(_REMOTE, '/instances/%s/simplified-tags' % a) | |
| 2178 # dcm2xml MarekLatin2.dcm | iconv -f latin2 -t utf-8 | xmllint --format - | |
| 2179 self.assertEqual('Imię i Nazwisko osoby opisującej', | |
| 2180 i['ContentSequence'][4]['ConceptNameCodeSequence'][0]['CodeMeaning'].encode('utf-8')) | |
| 2181 | |
|
26
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|
2182 |
|
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test_storescu_custom_aet
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diff
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|
2183 def test_storescu_custom_aet(self): |
|
040f6ef1394a
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diff
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|
2184 # This tests a feature introduced in Orthanc 0.9.1: "Custom |
|
040f6ef1394a
test_storescu_custom_aet
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diff
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|
2185 # setting of the local AET during C-Store SCU (both in Lua and |
|
040f6ef1394a
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diff
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|
2186 # in the REST API)." |
|
040f6ef1394a
test_storescu_custom_aet
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diff
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|
2187 # https://groups.google.com/forum/#!msg/orthanc-users/o5qMULformU/wZjW2iSaMcAJ |
|
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diff
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|
2188 |
|
040f6ef1394a
test_storescu_custom_aet
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diff
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|
2189 self.assertEqual(0, len(DoGet(_LOCAL, '/patients'))) |
|
040f6ef1394a
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diff
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|
2190 |
|
040f6ef1394a
test_storescu_custom_aet
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diff
changeset
|
2191 a = UploadInstance(_REMOTE, 'Knee/T1/IM-0001-0001.dcm') |
|
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diff
changeset
|
2192 b = UploadInstance(_REMOTE, 'Knee/T1/IM-0001-0002.dcm') |
|
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diff
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|
2193 c = UploadInstance(_REMOTE, 'Knee/T1/IM-0001-0003.dcm') |
|
040f6ef1394a
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diff
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|
2194 |
|
040f6ef1394a
test_storescu_custom_aet
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diff
changeset
|
2195 j = DoPost(_REMOTE, '/modalities/orthanctest/store', { |
|
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diff
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|
2196 'LocalAet' : 'YOP', |
|
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|
2197 'Resources' : [ a['ID'], b['ID'] ] |
|
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|
2198 }) |
|
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|
2199 |
|
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|
2200 self.assertEqual(2, len(DoGet(_LOCAL, '/instances'))) |
|
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2201 self.assertEqual('YOP', DoGet(_LOCAL, '/instances/%s/metadata/RemoteAET' % a['ID'])) |
|
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2202 |
|
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|
2203 DropOrthanc(_LOCAL) |
|
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2204 self.assertEqual(0, len(DoGet(_LOCAL, '/instances'))) |
|
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2205 |
|
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|
2206 j = DoPost(_REMOTE, '/modalities/orthanctest/store', { |
|
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2207 'Resources' : [ c['ID'] ] |
|
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2208 }) |
|
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|
2209 |
|
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|
2210 self.assertEqual(1, len(DoGet(_LOCAL, '/instances'))) |
|
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2211 self.assertEqual('ORTHANC', DoGet(_LOCAL, '/instances/%s/metadata/RemoteAET' % c['ID'])) |
|
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2212 |
|
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|
2213 DropOrthanc(_REMOTE) |
|
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|
2214 DropOrthanc(_LOCAL) |
|
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2215 |
|
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|
2216 InstallLuaScript('Lua/AutoroutingChangeAet.lua') |
|
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2217 DoPost(_REMOTE, '/tools/execute-script', 'aet = "HELLO"', 'application/lua') |
|
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2218 |
|
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2219 self.assertEqual(0, len(DoGet(_LOCAL, '/instances'))) |
|
040f6ef1394a
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2220 UploadInstance(_REMOTE, 'Knee/T1/IM-0001-0001.dcm') |
|
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|
2221 WaitEmpty(_REMOTE) |
|
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2222 self.assertEqual(1, len(DoGet(_LOCAL, '/instances'))) |
|
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|
2223 self.assertEqual('HELLO', DoGet(_LOCAL, '/instances/%s/metadata/RemoteAET' % a['ID'])) |
|
040f6ef1394a
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|
2224 |
|
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|
2225 DoPost(_REMOTE, '/tools/execute-script', 'aet = nill', 'application/lua') |
|
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2226 UploadInstance(_REMOTE, 'Knee/T1/IM-0001-0002.dcm') |
|
040f6ef1394a
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|
2227 WaitEmpty(_REMOTE) |
|
040f6ef1394a
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2228 self.assertEqual(2, len(DoGet(_LOCAL, '/instances'))) |
|
040f6ef1394a
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|
2229 self.assertEqual('ORTHANC', DoGet(_LOCAL, '/instances/%s/metadata/RemoteAET' % b['ID'])) |
|
34
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2230 |
|
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2231 def test_resources_since_limit(self): |
|
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2232 # Upload 16 instances |
|
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2233 for i in range(4): |
|
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2234 UploadInstance(_REMOTE, 'Brainix/Flair/IM-0001-000%d.dcm' % (i + 1)) |
|
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2235 UploadInstance(_REMOTE, 'Brainix/Epi/IM-0001-000%d.dcm' % (i + 1)) |
|
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2236 UploadInstance(_REMOTE, 'Knee/T1/IM-0001-000%d.dcm' % (i + 1)) |
|
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|
2237 UploadInstance(_REMOTE, 'Knee/T2/IM-0001-000%d.dcm' % (i + 1)) |
|
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2238 |
|
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|
2239 self.assertEqual(2, len(DoGet(_REMOTE, '/patients'))) |
|
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|
2240 self.assertEqual(2, len(DoGet(_REMOTE, '/studies'))) |
|
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2241 self.assertEqual(4, len(DoGet(_REMOTE, '/series'))) |
|
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2242 self.assertEqual(16, len(DoGet(_REMOTE, '/instances'))) |
|
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2243 |
|
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|
2244 self.assertRaises(Exception, lambda: DoGet(_REMOTE, '/patients&since=10' % i)) |
|
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2245 self.assertRaises(Exception, lambda: DoGet(_REMOTE, '/patients&limit=10' % i)) |
|
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|
2246 |
|
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2247 self.assertEqual(0, len(DoGet(_REMOTE, '/patients?since=0&limit=0'))) |
|
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|
2248 self.assertEqual(2, len(DoGet(_REMOTE, '/patients?since=0&limit=100'))) |
|
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|
2249 self.assertEqual(2, len(DoGet(_REMOTE, '/studies?since=0&limit=100'))) |
|
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|
2250 self.assertEqual(4, len(DoGet(_REMOTE, '/series?since=0&limit=100'))) |
|
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|
2251 self.assertEqual(16, len(DoGet(_REMOTE, '/instances?since=0&limit=100'))) |
|
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|
2252 self.assertEqual(1, len(DoGet(_REMOTE, '/patients?since=1&limit=100'))) |
|
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|
2253 self.assertEqual(0, len(DoGet(_REMOTE, '/patients?since=2&limit=100'))) |
|
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|
2254 self.assertEqual(0, len(DoGet(_REMOTE, '/patients?since=3&limit=100'))) |
|
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diff
changeset
|
2255 self.assertEqual(1, len(DoGet(_REMOTE, '/studies?since=1&limit=100'))) |
|
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diff
changeset
|
2256 self.assertEqual(3, len(DoGet(_REMOTE, '/series?since=1&limit=100'))) |
|
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|
2257 self.assertEqual(2, len(DoGet(_REMOTE, '/series?since=2&limit=100'))) |
|
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|
2258 self.assertEqual(1, len(DoGet(_REMOTE, '/series?since=3&limit=100'))) |
|
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|
2259 self.assertEqual(0, len(DoGet(_REMOTE, '/series?since=4&limit=100'))) |
|
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changeset
|
2260 self.assertEqual(0, len(DoGet(_REMOTE, '/series?since=100&limit=100'))) |
|
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|
2261 self.assertEqual(15, len(DoGet(_REMOTE, '/instances?since=1&limit=100'))) |
|
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changeset
|
2262 |
|
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|
2263 for limit in [ 1, 2, 3, 7, 16, 17 ]: |
|
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|
2264 s = {} |
|
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|
2265 since = 0 |
|
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changeset
|
2266 while True: |
|
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changeset
|
2267 t = DoGet(_REMOTE, '/instances?since=%d&limit=%d' % (since, limit)) |
|
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|
2268 if len(t) == 0: |
|
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diff
changeset
|
2269 break |
|
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diff
changeset
|
2270 |
|
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changeset
|
2271 since += len(t) |
|
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|
2272 for i in t: |
|
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|
2273 s[i] = None |
|
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|
2274 |
|
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|
2275 self.assertEqual(16, len(s)) |
|
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|
2276 for instance in DoGet(_REMOTE, '/instances'): |
|
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|
2277 self.assertTrue(instance in s) |
| 36 | 2278 |
| 2279 | |
| 2280 def test_create_pdf(self): | |
| 2281 # Upload 4 instances | |
| 2282 brainixInstance = UploadInstance(_REMOTE, 'Brainix/Flair/IM-0001-0001.dcm')['ID'] | |
| 2283 UploadInstance(_REMOTE, 'Brainix/Epi/IM-0001-0001.dcm') | |
| 2284 UploadInstance(_REMOTE, 'Knee/T1/IM-0001-0001.dcm') | |
| 2285 UploadInstance(_REMOTE, 'Knee/T2/IM-0001-0001.dcm') | |
| 2286 | |
| 2287 brainixPatient = '16738bc3-e47ed42a-43ce044c-a3414a45-cb069bd0' | |
| 2288 brainixStudy = '27f7126f-4f66fb14-03f4081b-f9341db2-53925988' | |
| 2289 brainixEpi = '2ac1316d-3e432022-62eabff2-c59f5475-9b1ac3f8' | |
| 2290 | |
| 2291 with open(GetDatabasePath('HelloWorld.pdf'), 'rb') as f: | |
| 2292 pdf = f.read() | |
| 2293 | |
| 2294 i = DoPost(_REMOTE, '/tools/create-dicom', | |
| 2295 json.dumps({ | |
| 2296 'Tags' : { | |
| 2297 'PatientName' : 'Jodogne', | |
| 2298 'Modality' : 'CT', | |
| 2299 }, | |
| 2300 'Content' : 'data:application/pdf;base64,' + base64.b64encode(pdf) | |
| 2301 })) | |
| 2302 | |
| 2303 self.assertEqual('Jodogne', DoGet(_REMOTE, '/instances/%s/content/PatientName' % i['ID']).strip()) | |
| 2304 self.assertEqual('OT', DoGet(_REMOTE, '/instances/%s/content/Modality' % i['ID']).strip()) | |
| 2305 | |
| 2306 b = DoGet(_REMOTE, '/instances/%s/content/0042-0011' % i['ID']) | |
| 2307 self.assertEqual(len(b), len(pdf) + 1) | |
| 2308 self.assertEqual(ComputeMD5(b), ComputeMD5(pdf + '\0')) | |
| 2309 | |
| 2310 self.assertRaises(Exception, lambda: DoPost(_REMOTE, '/tools/create-dicom', | |
| 2311 json.dumps({ | |
| 2312 'Parent' : brainixPatient, | |
| 2313 'Tags' : { | |
| 2314 'PatientName' : 'Jodogne', | |
| 2315 } | |
| 2316 }))) | |
| 2317 | |
| 2318 i = DoPost(_REMOTE, '/tools/create-dicom', | |
| 2319 json.dumps({ | |
| 2320 'Parent' : brainixPatient, | |
| 2321 'Tags' : { 'StudyDescription' : 'PDF^Patient' }, | |
| 2322 'Content' : 'data:application/pdf;base64,' + base64.b64encode(pdf) | |
| 2323 })) | |
| 2324 | |
| 2325 self.assertEqual(brainixPatient, DoGet(_REMOTE, '/instances/%s/patient' % i['ID'])['ID']) | |
| 2326 | |
| 2327 i = DoPost(_REMOTE, '/tools/create-dicom', | |
| 2328 json.dumps({ | |
| 2329 'Parent' : brainixStudy, | |
| 2330 'Tags' : { 'SeriesDescription' : 'PDF^Study' }, | |
| 2331 'Content' : 'data:application/pdf;base64,' + base64.b64encode(pdf) | |
| 2332 })) | |
| 2333 | |
| 2334 self.assertEqual(brainixStudy, DoGet(_REMOTE, '/instances/%s/study' % i['ID'])['ID']) | |
| 2335 | |
| 2336 i = DoPost(_REMOTE, '/tools/create-dicom', | |
| 2337 json.dumps({ | |
| 2338 'Parent' : brainixEpi, | |
| 37 | 2339 'Tags' : { 'SpecificCharacterSet' : 'ISO_IR 13' }, |
| 36 | 2340 'Content' : 'data:application/pdf;base64,' + base64.b64encode(pdf) |
| 2341 })) | |
| 2342 | |
| 2343 self.assertEqual(brainixEpi, DoGet(_REMOTE, '/instances/%s/series' % i['ID'])['ID']) | |
| 2344 | |
| 2345 b = DoGet(_REMOTE, '/instances/%s/pdf' % i['ID']) | |
| 2346 self.assertEqual(len(b), len(pdf)) | |
| 2347 self.assertEqual(ComputeMD5(b), ComputeMD5(pdf)) | |
| 2348 | |
| 2349 self.assertRaises(Exception, lambda: DoGet(_REMOTE, '/instances/%s/pdf' % brainixInstance)) | |
| 38 | 2350 |
| 2351 | |
| 2352 def test_create_series(self): | |
| 2353 i = DoPost(_REMOTE, '/tools/create-dicom', | |
| 2354 json.dumps({ | |
| 2355 'Tags' : { | |
| 40 | 2356 'SpecificCharacterSet' : 'ISO_IR 100', |
| 2357 'PatientName' : 'Sébastien Jodogne', | |
| 38 | 2358 'Modality' : 'CT', |
| 2359 }, | |
| 2360 'Content' : [ | |
| 40 | 2361 { |
| 2362 'Content': 'data:image/png;base64,iVBORw0KGgoAAAANSUhEUgAAAAUAAAAFCAYAAACNbyblAAAAHElEQVQI12P4//8/w38GIAXDIBKE0DHxgljNBAAO9TXL0Y4OHwAAAABJRU5ErkJggg==', # red dot in RGBA | |
| 2363 'Tags' : { 'ImageComments' : 'Tutu' } | |
| 2364 }, | |
| 38 | 2365 'data:image/png;base64,iVBORw0KGgoAAAANSUhEUgAAABAAAAAQCAYAAAAf8/9hAAAAoUlEQVQ4jZ2SWw3EIBREjwUsYAELa2EtoAULFUCyXAtroRZqoRbox254BdLC/DZnZjoXWJFgCDg8egW2CBEhEnDzyRk+Ecxz2KP/0AL8S99T+jQccAVs22qKwAuPuq0uyNg9cPLh3am+pe/dkHLZtqJHj6vXJrZ7nvzvxxgemXgUwnGfXqpee09mUwp8m022OYP6bLF7mVuVe0y/umxinsAXRd9z0k1ubWsAAAAASUVORK5CYII=', |
| 2366 ] | |
| 2367 })) | |
| 2368 | |
| 2369 s = DoGet(_REMOTE, i['Path']) | |
| 2370 self.assertEqual('Series', s['Type']) | |
| 2371 self.assertEqual(s['ID'], i['ID']) | |
| 2372 self.assertEqual(2, len(s['Instances'])) | |
| 39 | 2373 self.assertEqual(2, s['ExpectedNumberOfInstances']) |
| 2374 self.assertEqual('Complete', s['Status']) | |
| 40 | 2375 |
| 2376 a = DoGet(_REMOTE, '/instances/%s/tags?simplify' % s['Instances'][0]) | |
| 2377 b = DoGet(_REMOTE, '/instances/%s/tags?simplify' % s['Instances'][1]) | |
| 2378 self.assertTrue('ImageComments' in a or 'ImageComments' in b) | |
| 2379 if 'ImageComments' in a: | |
| 2380 self.assertEqual('Tutu', a['ImageComments']) | |
| 2381 else: | |
| 2382 self.assertEqual('Tutu', b['ImageComments']) | |
| 2383 | |
| 2384 patient = DoGet(_REMOTE, '/instances/%s/patient' % s['Instances'][0]) | |
| 2385 self.assertEqual(patient['MainDicomTags']['PatientName'].encode('utf-8'), | |
| 2386 'Sébastien Jodogne') | |
| 47 | 2387 |
| 2388 | |
| 2389 def test_create_binary(self): | |
| 2390 binary = ''.join(map(chr, range(256))) | |
| 2391 encoded = 'data:application/octet-stream;base64,' + base64.b64encode(binary) | |
| 2392 tags = { | |
| 2393 'PatientName' : 'Jodogne', | |
| 2394 '8899-8899' : encoded | |
| 2395 } | |
| 2396 | |
| 2397 i = DoPost(_REMOTE, '/tools/create-dicom', | |
| 2398 json.dumps({ | |
| 2399 'Tags' : tags | |
| 2400 })) | |
| 2401 | |
| 2402 self.assertEqual('Jodogne', DoGet(_REMOTE, '/instances/%s/content/PatientName' % i['ID']).strip()) | |
| 2403 self.assertEqual(binary, DoGet(_REMOTE, '/instances/%s/content/8899-8899' % i['ID']).strip()) | |
| 2404 | |
| 2405 i = DoPost(_REMOTE, '/tools/create-dicom', | |
| 2406 json.dumps({ | |
| 2407 'InterpretBinaryTags' : False, | |
| 2408 'Tags' : tags | |
| 2409 })) | |
| 2410 | |
| 2411 self.assertEqual('Jodogne', DoGet(_REMOTE, '/instances/%s/content/PatientName' % i['ID']).strip()) | |
| 2412 self.assertEqual(encoded, DoGet(_REMOTE, '/instances/%s/content/8899-8899' % i['ID'])[0:-1]) | |
|
48
e4352463ff74
test_patient_ids_collision
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
47
diff
changeset
|
2413 |
|
e4352463ff74
test_patient_ids_collision
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
47
diff
changeset
|
2414 |
|
e4352463ff74
test_patient_ids_collision
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
47
diff
changeset
|
2415 def test_patient_ids_collision(self): |
|
e4352463ff74
test_patient_ids_collision
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
47
diff
changeset
|
2416 # Upload 3 instances from 3 different studies, but with the |
|
e4352463ff74
test_patient_ids_collision
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
47
diff
changeset
|
2417 # same PatientID |
|
e4352463ff74
test_patient_ids_collision
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
47
diff
changeset
|
2418 for i in range(3): |
|
e4352463ff74
test_patient_ids_collision
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
47
diff
changeset
|
2419 UploadInstance(_REMOTE, 'PatientIdsCollision/Image%d.dcm' % (i + 1)) |
|
e4352463ff74
test_patient_ids_collision
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
47
diff
changeset
|
2420 |
|
e4352463ff74
test_patient_ids_collision
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
47
diff
changeset
|
2421 a = DoPost(_REMOTE, '/tools/find', { 'Level' : 'Patient', |
|
e4352463ff74
test_patient_ids_collision
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
47
diff
changeset
|
2422 'Query' : { 'PatientName' : '*' }}) |
|
e4352463ff74
test_patient_ids_collision
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
47
diff
changeset
|
2423 self.assertEqual(1, len(a)) |
|
e4352463ff74
test_patient_ids_collision
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
47
diff
changeset
|
2424 self.assertEqual('COMMON', DoGet(_REMOTE, '/patients/%s' % a[0]) ['MainDicomTags']['PatientID']) |
|
e4352463ff74
test_patient_ids_collision
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
47
diff
changeset
|
2425 |
|
e4352463ff74
test_patient_ids_collision
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
47
diff
changeset
|
2426 a = DoPost(_REMOTE, '/tools/find', { 'Level' : 'Study', |
|
e4352463ff74
test_patient_ids_collision
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
47
diff
changeset
|
2427 'CaseSensitive' : True, |
|
e4352463ff74
test_patient_ids_collision
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
47
diff
changeset
|
2428 'Query' : { 'PatientName' : 'FOO\\HELLO' }}) |
|
e4352463ff74
test_patient_ids_collision
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
47
diff
changeset
|
2429 self.assertEqual(2, len(a)) |
|
e4352463ff74
test_patient_ids_collision
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
47
diff
changeset
|
2430 |
|
e4352463ff74
test_patient_ids_collision
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
47
diff
changeset
|
2431 a = DoPost(_REMOTE, '/tools/find', { 'Level' : 'Series', |
|
e4352463ff74
test_patient_ids_collision
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
47
diff
changeset
|
2432 'CaseSensitive' : False, |
|
e4352463ff74
test_patient_ids_collision
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
47
diff
changeset
|
2433 'Query' : { 'PatientName' : 'Foo' }}) |
|
e4352463ff74
test_patient_ids_collision
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
47
diff
changeset
|
2434 self.assertEqual(1, len(a)) |
|
e4352463ff74
test_patient_ids_collision
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
47
diff
changeset
|
2435 self.assertEqual('FOO^SERIES', DoGet(_REMOTE, '/series/%s/study' % a[0]) ['MainDicomTags']['StudyDescription']) |
|
e4352463ff74
test_patient_ids_collision
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
47
diff
changeset
|
2436 self.assertEqual('FOO', DoGet(_REMOTE, '/series/%s/study' % a[0]) ['PatientMainDicomTags']['PatientName']) |
|
e4352463ff74
test_patient_ids_collision
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
47
diff
changeset
|
2437 self.assertEqual('COMMON', DoGet(_REMOTE, '/series/%s/study' % a[0]) ['PatientMainDicomTags']['PatientID']) |
|
e4352463ff74
test_patient_ids_collision
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
47
diff
changeset
|
2438 |
|
e4352463ff74
test_patient_ids_collision
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
47
diff
changeset
|
2439 a = DoPost(_REMOTE, '/tools/find', { 'Level' : 'Study', |
|
e4352463ff74
test_patient_ids_collision
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
47
diff
changeset
|
2440 'Query' : { 'PatientName' : '*' }}) |
|
e4352463ff74
test_patient_ids_collision
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
47
diff
changeset
|
2441 self.assertEqual(3, len(a)) |
|
e4352463ff74
test_patient_ids_collision
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
47
diff
changeset
|
2442 d = map(lambda x: DoGet(_REMOTE, '/studies/%s' % x) ['MainDicomTags']['StudyDescription'], a) |
|
e4352463ff74
test_patient_ids_collision
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
47
diff
changeset
|
2443 self.assertTrue('FOO^SERIES' in d) |
|
e4352463ff74
test_patient_ids_collision
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
47
diff
changeset
|
2444 self.assertTrue('HELLO^SERIES' in d) |
|
e4352463ff74
test_patient_ids_collision
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
47
diff
changeset
|
2445 self.assertTrue('WORLD^SERIES' in d) |
|
e4352463ff74
test_patient_ids_collision
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
47
diff
changeset
|
2446 |
|
e4352463ff74
test_patient_ids_collision
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
47
diff
changeset
|
2447 d = map(lambda x: DoGet(_REMOTE, '/studies/%s' % x) ['PatientMainDicomTags']['PatientID'], a) |
|
e4352463ff74
test_patient_ids_collision
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
47
diff
changeset
|
2448 self.assertEqual(1, len(set(d))) |
|
e4352463ff74
test_patient_ids_collision
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
47
diff
changeset
|
2449 self.assertEqual('COMMON', d[0]) |
|
e4352463ff74
test_patient_ids_collision
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
47
diff
changeset
|
2450 |
|
e4352463ff74
test_patient_ids_collision
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
47
diff
changeset
|
2451 for i in a: |
|
e4352463ff74
test_patient_ids_collision
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
47
diff
changeset
|
2452 d = DoGet(_REMOTE, '/studies/%s' % i) ['MainDicomTags']['StudyDescription'] |
|
e4352463ff74
test_patient_ids_collision
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
47
diff
changeset
|
2453 p = DoGet(_REMOTE, '/studies/%s' % i) ['PatientMainDicomTags']['PatientName'] |
|
e4352463ff74
test_patient_ids_collision
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
47
diff
changeset
|
2454 self.assertEqual('%s^SERIES' % p, d) |
|
49
e7f9b8199545
test_bitbucket_issue_4
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
48
diff
changeset
|
2455 |
|
e7f9b8199545
test_bitbucket_issue_4
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
48
diff
changeset
|
2456 |
|
e7f9b8199545
test_bitbucket_issue_4
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
48
diff
changeset
|
2457 def test_bitbucket_issue_4(self): |
|
e7f9b8199545
test_bitbucket_issue_4
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
48
diff
changeset
|
2458 UploadInstance(_REMOTE, 'Brainix/Epi/IM-0001-0001.dcm') |
|
e7f9b8199545
test_bitbucket_issue_4
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
48
diff
changeset
|
2459 UploadInstance(_REMOTE, 'Brainix/Epi/IM-0001-0002.dcm') |
|
e7f9b8199545
test_bitbucket_issue_4
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
48
diff
changeset
|
2460 UploadInstance(_REMOTE, 'Brainix/Epi/IM-0001-0003.dcm') |
|
e7f9b8199545
test_bitbucket_issue_4
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
48
diff
changeset
|
2461 UploadInstance(_REMOTE, 'Formats/Jpeg.dcm') |
|
e7f9b8199545
test_bitbucket_issue_4
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
48
diff
changeset
|
2462 UploadInstance(_REMOTE, 'Formats/JpegLossless.dcm') |
|
e7f9b8199545
test_bitbucket_issue_4
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
48
diff
changeset
|
2463 UploadInstance(_REMOTE, 'Formats/Rle.dcm') |
|
e7f9b8199545
test_bitbucket_issue_4
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
48
diff
changeset
|
2464 |
|
e7f9b8199545
test_bitbucket_issue_4
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
48
diff
changeset
|
2465 self.assertEqual(0, len(DoGet(_LOCAL, '/instances'))) |
|
e7f9b8199545
test_bitbucket_issue_4
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
48
diff
changeset
|
2466 self.assertEqual(6, len(DoGet(_REMOTE, '/instances'))) |
|
e7f9b8199545
test_bitbucket_issue_4
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
48
diff
changeset
|
2467 |
|
e7f9b8199545
test_bitbucket_issue_4
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
48
diff
changeset
|
2468 p = DoGet(_REMOTE, '/patients') |
|
e7f9b8199545
test_bitbucket_issue_4
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
48
diff
changeset
|
2469 self.assertEqual(2, len(p)) |
|
e7f9b8199545
test_bitbucket_issue_4
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
48
diff
changeset
|
2470 i1 = map(lambda x: x['ID'], DoGet(_REMOTE, '/patients/%s/instances' % p[0])) |
|
e7f9b8199545
test_bitbucket_issue_4
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
48
diff
changeset
|
2471 i2 = map(lambda x: x['ID'], DoGet(_REMOTE, '/patients/%s/instances' % p[1])) |
|
e7f9b8199545
test_bitbucket_issue_4
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
48
diff
changeset
|
2472 self.assertEqual(3, len(i1)) |
|
e7f9b8199545
test_bitbucket_issue_4
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
48
diff
changeset
|
2473 self.assertEqual(3, len(i2)) |
|
e7f9b8199545
test_bitbucket_issue_4
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
48
diff
changeset
|
2474 |
|
e7f9b8199545
test_bitbucket_issue_4
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
48
diff
changeset
|
2475 j = DoPost(_REMOTE, '/modalities/orthanctest/store', i2[0:1] + i1 + i2[1:3]) |
|
e7f9b8199545
test_bitbucket_issue_4
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
48
diff
changeset
|
2476 |
|
e7f9b8199545
test_bitbucket_issue_4
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
48
diff
changeset
|
2477 self.assertEqual(6, len(DoGet(_LOCAL, '/instances'))) |
|
50
8de63d56cf11
test_create_sequence
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
49
diff
changeset
|
2478 |
|
8de63d56cf11
test_create_sequence
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
49
diff
changeset
|
2479 |
|
8de63d56cf11
test_create_sequence
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
49
diff
changeset
|
2480 def test_create_sequence(self): |
|
8de63d56cf11
test_create_sequence
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
49
diff
changeset
|
2481 i = DoPost(_REMOTE, '/tools/create-dicom', |
|
8de63d56cf11
test_create_sequence
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
49
diff
changeset
|
2482 json.dumps({ |
|
8de63d56cf11
test_create_sequence
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
49
diff
changeset
|
2483 'Tags' : { |
|
8de63d56cf11
test_create_sequence
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
49
diff
changeset
|
2484 'SpecificCharacterSet': 'ISO_IR 100', # Encode using Latin1 |
|
8de63d56cf11
test_create_sequence
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
49
diff
changeset
|
2485 'PatientName': 'Jodogne^', |
|
51
264a20a0276d
test_modify_sequence
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
50
diff
changeset
|
2486 'ReferencedStudySequence': GenerateTestSequence(), |
|
50
8de63d56cf11
test_create_sequence
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
49
diff
changeset
|
2487 } |
|
8de63d56cf11
test_create_sequence
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
49
diff
changeset
|
2488 }))['ID'] |
|
8de63d56cf11
test_create_sequence
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
49
diff
changeset
|
2489 |
|
8de63d56cf11
test_create_sequence
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
49
diff
changeset
|
2490 self.assertEqual('Jodogne^', DoGet(_REMOTE, '/instances/%s/content/PatientName' % i)) |
|
8de63d56cf11
test_create_sequence
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
49
diff
changeset
|
2491 self.assertEqual('Hello^', DoGet(_REMOTE, '/instances/%s/content/ReferencedStudySequence/0/StudyDescription' % i)) |
|
8de63d56cf11
test_create_sequence
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
49
diff
changeset
|
2492 self.assertEqual('Toto', DoGet(_REMOTE, '/instances/%s/content/ReferencedStudySequence/0/ReferencedStudySequence/0/StudyDescription' % i)) |
|
8de63d56cf11
test_create_sequence
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
49
diff
changeset
|
2493 self.assertEqual('Tata', DoGet(_REMOTE, '/instances/%s/content/ReferencedStudySequence/0/ReferencedStudySequence/1/StudyDescription' % i)) |
|
8de63d56cf11
test_create_sequence
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
49
diff
changeset
|
2494 self.assertEqual(u'Sébastien^'.encode('latin-1'), |
|
8de63d56cf11
test_create_sequence
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
49
diff
changeset
|
2495 DoGet(_REMOTE, '/instances/%s/content/ReferencedStudySequence/1/StudyDescription' % i)) |
|
51
264a20a0276d
test_modify_sequence
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
50
diff
changeset
|
2496 |
|
264a20a0276d
test_modify_sequence
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
50
diff
changeset
|
2497 |
|
264a20a0276d
test_modify_sequence
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
50
diff
changeset
|
2498 def test_modify_sequence(self): |
|
264a20a0276d
test_modify_sequence
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parents:
50
diff
changeset
|
2499 i = UploadInstance(_REMOTE, 'PrivateTags.dcm')['ID'] |
|
264a20a0276d
test_modify_sequence
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parents:
50
diff
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|
2500 self.assertRaises(Exception, lambda: DoGet(_REMOTE, '/instances/%s/content/ReferencedStudySequence' % i)) |
|
264a20a0276d
test_modify_sequence
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parents:
50
diff
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|
2501 |
|
264a20a0276d
test_modify_sequence
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
50
diff
changeset
|
2502 j = DoPost(_REMOTE, '/instances/%s/modify' % i, |
|
264a20a0276d
test_modify_sequence
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
50
diff
changeset
|
2503 json.dumps({ |
|
264a20a0276d
test_modify_sequence
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
50
diff
changeset
|
2504 "Replace" : { |
|
264a20a0276d
test_modify_sequence
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
50
diff
changeset
|
2505 "PatientName" : "hello", |
|
264a20a0276d
test_modify_sequence
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
50
diff
changeset
|
2506 'ReferencedStudySequence': GenerateTestSequence(), |
|
264a20a0276d
test_modify_sequence
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
50
diff
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|
2507 }, |
|
264a20a0276d
test_modify_sequence
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
50
diff
changeset
|
2508 }), |
|
264a20a0276d
test_modify_sequence
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
50
diff
changeset
|
2509 'application/json') |
|
264a20a0276d
test_modify_sequence
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
50
diff
changeset
|
2510 j = DoPost(_REMOTE, '/instances', j, 'application/dicom')['ID'] |
|
264a20a0276d
test_modify_sequence
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
50
diff
changeset
|
2511 DoDelete(_REMOTE, '/instances/%s' % i) |
|
264a20a0276d
test_modify_sequence
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
50
diff
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|
2512 |
| 52 | 2513 self.assertEqual(2, len(DoGet(_REMOTE, '/instances/%s/content/ReferencedStudySequence' % j))) |
| 2514 | |
| 2515 | |
| 2516 def test_compression(self): | |
| 2517 i = UploadInstance(_REMOTE, 'DummyCT.dcm')['ID'] | |
| 2518 | |
| 2519 data = DoGetRaw(_REMOTE, '/instances/%s/attachments/dicom-as-json/data' % i)[1] | |
| 2520 | |
| 2521 # "StorageCompression" is enabled in the Orthanc to be tested, | |
| 2522 # uncompress the data before running the test | |
| 2523 if DoGet(_REMOTE, '/instances/%s/attachments/dicom-as-json/is-compressed' % i) != 0: | |
| 2524 DoPost(_REMOTE, '/instances/%s/attachments/dicom-as-json/uncompress' % i) | |
| 2525 | |
| 2526 cs = DoGet(_REMOTE, '/statistics')['TotalDiskSize'] | |
| 2527 us = DoGet(_REMOTE, '/statistics')['TotalUncompressedSize'] | |
| 2528 size = DoGet(_REMOTE, '/instances/%s/attachments/dicom-as-json/size' % i) | |
| 2529 md5 = DoGet(_REMOTE, '/instances/%s/attachments/dicom-as-json/md5' % i) | |
| 2530 self.assertEqual(data, DoGetRaw(_REMOTE, '/instances/%s/attachments/dicom-as-json/compressed-data' % i)[1]) | |
| 2531 self.assertEqual(md5, DoGet(_REMOTE, '/instances/%s/attachments/dicom-as-json/compressed-md5' % i)) | |
| 2532 self.assertEqual(size, DoGet(_REMOTE, '/instances/%s/attachments/dicom-as-json/compressed-size' % i)) | |
| 2533 | |
| 2534 ops = DoGet(_REMOTE, '/instances/%s/attachments/dicom-as-json' % i) | |
| 2535 self.assertTrue('compress' in ops) | |
| 2536 self.assertTrue('uncompress' in ops) | |
| 2537 self.assertTrue('is-compressed' in ops) | |
| 2538 self.assertEqual(0, DoGet(_REMOTE, '/instances/%s/attachments/dicom-as-json/is-compressed' % i)) | |
| 2539 DoPost(_REMOTE, '/instances/%s/attachments/dicom-as-json/verify-md5' % i) | |
| 2540 | |
| 2541 DoPost(_REMOTE, '/instances/%s/attachments/dicom-as-json/compress' % i) | |
| 2542 DoPost(_REMOTE, '/instances/%s/attachments/dicom-as-json/verify-md5' % i) | |
| 2543 self.assertEqual(1, DoGet(_REMOTE, '/instances/%s/attachments/dicom-as-json/is-compressed' % i)) | |
| 2544 self.assertLess(cs, DoGet(_REMOTE, '/statistics')['TotalDiskSize']) | |
| 2545 self.assertEqual(us, DoGet(_REMOTE, '/statistics')['TotalUncompressedSize']) | |
| 2546 self.assertGreater(len(data), len(DoGetRaw(_REMOTE, '/instances/%s/attachments/dicom-as-json/compressed-data' % i)[1])) | |
| 2547 self.assertGreater(size, DoGet(_REMOTE, '/instances/%s/attachments/dicom-as-json/compressed-size' % i)) | |
| 2548 self.assertEqual(size, DoGet(_REMOTE, '/instances/%s/attachments/dicom-as-json/size' % i)) | |
| 2549 self.assertEqual(md5, DoGet(_REMOTE, '/instances/%s/attachments/dicom-as-json/md5' % i)) | |
| 2550 self.assertNotEqual(md5, DoGet(_REMOTE, '/instances/%s/attachments/dicom-as-json/compressed-md5' % i)) | |
| 2551 | |
| 2552 DoPost(_REMOTE, '/instances/%s/attachments/dicom-as-json/uncompress' % i) | |
| 2553 DoPost(_REMOTE, '/instances/%s/attachments/dicom-as-json/verify-md5' % i) | |
| 2554 self.assertEqual(0, DoGet(_REMOTE, '/instances/%s/attachments/dicom-as-json/is-compressed' % i)) | |
| 2555 self.assertEqual(data, DoGetRaw(_REMOTE, '/instances/%s/attachments/dicom-as-json/compressed-data' % i)[1]) | |
| 2556 self.assertEqual(size, DoGet(_REMOTE, '/instances/%s/attachments/dicom-as-json/compressed-size' % i)) | |
| 2557 self.assertEqual(size, DoGet(_REMOTE, '/instances/%s/attachments/dicom-as-json/size' % i)) | |
| 2558 self.assertEqual(md5, DoGet(_REMOTE, '/instances/%s/attachments/dicom-as-json/md5' % i)) | |
| 2559 self.assertEqual(md5, DoGet(_REMOTE, '/instances/%s/attachments/dicom-as-json/compressed-md5' % i)) | |
| 2560 self.assertEqual(cs, DoGet(_REMOTE, '/statistics')['TotalDiskSize']) | |
| 2561 self.assertEqual(us, DoGet(_REMOTE, '/statistics')['TotalUncompressedSize']) | |
| 53 | 2562 |
| 2563 | |
| 2564 def test_ordered_slices(self): | |
| 2565 i = UploadInstance(_REMOTE, 'Multiframe.dcm')['ID'] | |
| 2566 s = DoGet(_REMOTE, '/instances/%s' % i)['ParentSeries'] | |
| 2567 o = DoGet(_REMOTE, '/series/%s/ordered-slices' % s) | |
| 2568 self.assertEqual('Sequence', o['Type']) | |
| 2569 self.assertEqual(1, len(o['Dicom'])) | |
| 2570 self.assertEqual('/instances/9e05eb0a-18b6268c-e0d36085-8ddab517-3b5aec02/file', o['Dicom'][0]) | |
| 2571 self.assertEqual(76, len(o['Slices'])) | |
| 2572 for j in range(76): | |
| 2573 self.assertEqual('/instances/9e05eb0a-18b6268c-e0d36085-8ddab517-3b5aec02/frames/%d' % j, o['Slices'][j]) | |
| 2574 | |
| 68 | 2575 self.assertEqual(1, len(o['SlicesShort'])) |
| 2576 self.assertEqual('9e05eb0a-18b6268c-e0d36085-8ddab517-3b5aec02', o['SlicesShort'][0][0]) | |
| 2577 self.assertEqual(0, o['SlicesShort'][0][1]) | |
| 2578 self.assertEqual(76, o['SlicesShort'][0][2]) | |
| 2579 | |
| 53 | 2580 i = UploadInstance(_REMOTE, 'Brainix/Epi/IM-0001-0001.dcm')['ID'] |
| 2581 j = UploadInstance(_REMOTE, 'Brainix/Epi/IM-0001-0002.dcm')['ID'] | |
| 2582 k = UploadInstance(_REMOTE, 'Brainix/Epi/IM-0001-0003.dcm')['ID'] | |
| 2583 s = DoGet(_REMOTE, '/instances/%s' % i)['ParentSeries'] | |
| 2584 o = DoGet(_REMOTE, '/series/%s/ordered-slices' % s) | |
| 2585 | |
| 2586 self.assertEqual('Volume', o['Type']) | |
| 2587 self.assertEqual(3, len(o['Dicom'])) | |
| 2588 self.assertEqual(3, len(o['Slices'])) | |
| 2589 self.assertEqual('/instances/%s/file' % i, o['Dicom'][2]) | |
| 2590 self.assertEqual('/instances/%s/file' % j, o['Dicom'][1]) | |
| 2591 self.assertEqual('/instances/%s/file' % k, o['Dicom'][0]) | |
| 2592 self.assertEqual('/instances/%s/frames/0' % i, o['Slices'][2]) | |
| 2593 self.assertEqual('/instances/%s/frames/0' % j, o['Slices'][1]) | |
| 2594 self.assertEqual('/instances/%s/frames/0' % k, o['Slices'][0]) | |
| 2595 | |
| 68 | 2596 self.assertEqual(3, len(o['SlicesShort'])) |
| 2597 self.assertEqual(k, o['SlicesShort'][0][0]) | |
| 2598 self.assertEqual(0, o['SlicesShort'][0][1]) | |
| 2599 self.assertEqual(1, o['SlicesShort'][0][2]) | |
| 2600 self.assertEqual(j, o['SlicesShort'][1][0]) | |
| 2601 self.assertEqual(0, o['SlicesShort'][1][1]) | |
| 2602 self.assertEqual(1, o['SlicesShort'][1][2]) | |
| 2603 self.assertEqual(i, o['SlicesShort'][2][0]) | |
| 2604 self.assertEqual(0, o['SlicesShort'][2][1]) | |
| 2605 self.assertEqual(1, o['SlicesShort'][2][2]) | |
| 2606 | |
| 53 | 2607 i = UploadInstance(_REMOTE, 'Beaufix/IM-0001-0001.dcm')['ID'] |
| 2608 j = UploadInstance(_REMOTE, 'Beaufix/IM-0001-0002.dcm')['ID'] | |
| 2609 s = DoGet(_REMOTE, '/instances/%s' % i)['ParentSeries'] | |
| 2610 o = DoGet(_REMOTE, '/series/%s/ordered-slices' % s) | |
| 2611 | |
| 2612 self.assertEqual('Sequence', o['Type']) | |
| 2613 self.assertEqual(2, len(o['Dicom'])) | |
| 2614 self.assertEqual(2, len(o['Slices'])) | |
| 2615 self.assertEqual('/instances/%s/file' % i, o['Dicom'][0]) | |
| 2616 self.assertEqual('/instances/%s/file' % j, o['Dicom'][1]) | |
| 2617 self.assertEqual('/instances/%s/frames/0' % i, o['Slices'][0]) | |
| 2618 self.assertEqual('/instances/%s/frames/0' % j, o['Slices'][1]) | |
|
54
c5f8a6b0d85e
test_incoming_movescu_accession
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parents:
53
diff
changeset
|
2619 |
| 68 | 2620 self.assertEqual(2, len(o['SlicesShort'])) |
| 2621 self.assertEqual(i, o['SlicesShort'][0][0]) | |
| 2622 self.assertEqual(0, o['SlicesShort'][0][1]) | |
| 2623 self.assertEqual(1, o['SlicesShort'][0][2]) | |
| 2624 self.assertEqual(j, o['SlicesShort'][1][0]) | |
| 2625 self.assertEqual(0, o['SlicesShort'][1][1]) | |
| 2626 self.assertEqual(1, o['SlicesShort'][1][2]) | |
| 2627 | |
| 2628 | |
|
54
c5f8a6b0d85e
test_incoming_movescu_accession
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parents:
53
diff
changeset
|
2629 |
|
c5f8a6b0d85e
test_incoming_movescu_accession
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parents:
53
diff
changeset
|
2630 def test_incoming_movescu_accession(self): |
|
c5f8a6b0d85e
test_incoming_movescu_accession
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parents:
53
diff
changeset
|
2631 UploadInstance(_REMOTE, 'Knee/T1/IM-0001-0001.dcm') |
|
c5f8a6b0d85e
test_incoming_movescu_accession
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diff
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|
2632 |
|
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diff
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|
2633 # No matching patient, so no job is created |
|
54
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test_incoming_movescu_accession
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parents:
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diff
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|
2634 self.assertEqual(0, len(DoGet(_LOCAL, '/patients'))) |
|
c5f8a6b0d85e
test_incoming_movescu_accession
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parents:
53
diff
changeset
|
2635 CallMoveScu([ '--study', '-k', '0008,0052=STUDY', '-k', 'AccessionNumber=nope' ]) |
|
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test_incoming_movescu_accession
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parents:
53
diff
changeset
|
2636 self.assertEqual(0, len(DoGet(_LOCAL, '/patients'))) |
|
c5f8a6b0d85e
test_incoming_movescu_accession
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parents:
53
diff
changeset
|
2637 CallMoveScu([ '--study', '-k', '0008,0052=PATIENT', '-k', 'AccessionNumber=A10003245599' ]) |
|
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test_incoming_movescu_accession
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parents:
53
diff
changeset
|
2638 self.assertEqual(0, len(DoGet(_LOCAL, '/patients'))) |
|
137
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|
2639 |
|
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testing asynchronous c-move
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diff
changeset
|
2640 # 1 Matching patient, track the job |
| 138 | 2641 self.assertTrue(MonitorJob(_REMOTE, lambda: CallMoveScu([ |
| 2642 '--study', | |
| 2643 '-k', '0008,0052=STUDY', | |
| 2644 '-k', 'AccessionNumber=A10003245599' | |
| 2645 ]))) | |
|
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|
2646 |
|
54
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test_incoming_movescu_accession
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diff
changeset
|
2647 self.assertEqual(1, len(DoGet(_LOCAL, '/patients'))) |
|
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|
2648 |
| 55 | 2649 |
| 2650 def test_dicom_to_json(self): | |
| 2651 i = UploadInstance(_REMOTE, 'PrivateMDNTags.dcm')['ID'] | |
|
60
cd3c7f70f139
test backward compatibility with Orthanc 0.9.4
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59
diff
changeset
|
2652 j = UploadInstance(_REMOTE, 'PrivateTags.dcm')['ID'] |
|
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test backward compatibility with Orthanc 0.9.4
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|
2653 |
|
cd3c7f70f139
test backward compatibility with Orthanc 0.9.4
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59
diff
changeset
|
2654 t = DoGet(_REMOTE, '/instances/%s/tags?simplify' % i) |
|
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test backward compatibility with Orthanc 0.9.4
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diff
changeset
|
2655 with open(GetDatabasePath('PrivateMDNTagsSimplify.json'), 'r') as f: |
|
80
8466dbfcb22b
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diff
changeset
|
2656 self.assertTrue(CompareTags(t, json.loads(f.read()), [ |
| 123 | 2657 # Tags for compatibility with DCMTK 3.6.0 |
| 2658 'RETIRED_OtherPatientIDs', | |
| 2659 'OtherPatientIDs', | |
| 2660 'ACR_NEMA_2C_VariablePixelDataGroupLength', | |
|
80
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fix test against dcmtk 3.6.1
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|
2661 ])) |
| 55 | 2662 |
| 2663 t = DoGet(_REMOTE, '/instances/%s/tags' % i) | |
| 2664 with open(GetDatabasePath('PrivateMDNTagsFull.json'), 'r') as f: | |
|
87
4b24faec842b
test_reconstruct_json2 + test_private_tags
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diff
changeset
|
2665 self.assertTrue(CompareTags(t, json.loads(f.read()), [ |
|
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test_reconstruct_json2 + test_private_tags
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|
2666 ])) |
| 55 | 2667 |
|
60
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changeset
|
2668 t = DoGet(_REMOTE, '/instances/%s/tags?simplify' % j) |
|
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|
2669 with open(GetDatabasePath('PrivateTagsSimplify.json'), 'r') as f: |
|
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|
2670 self.assertTrue(CompareTags(t, json.loads(f.read()), [ |
|
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|
2671 ])) |
|
60
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|
2672 |
|
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diff
changeset
|
2673 t = DoGet(_REMOTE, '/instances/%s/tags' % j) |
|
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|
2674 with open(GetDatabasePath('PrivateTagsFull.json'), 'r') as f: |
|
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changeset
|
2675 a = json.loads(f.read()) |
|
65
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patch for testing windows builds
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64
diff
changeset
|
2676 aa = json.dumps(a).replace('2e+022', '2e+22') |
|
09fc27e0899a
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diff
changeset
|
2677 tt = json.dumps(t).replace('2e+022', '2e+22') |
|
09fc27e0899a
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changeset
|
2678 self.assertEqual(aa, tt) |
| 57 | 2679 |
| 2680 | |
| 2681 def test_batch_archive(self): | |
| 2682 UploadInstance(_REMOTE, 'Knee/T1/IM-0001-0001.dcm') | |
| 2683 UploadInstance(_REMOTE, 'Knee/T1/IM-0001-0002.dcm') | |
| 2684 UploadInstance(_REMOTE, 'Knee/T2/IM-0001-0001.dcm') | |
| 2685 UploadInstance(_REMOTE, 'Knee/T2/IM-0001-0002.dcm') | |
| 2686 UploadInstance(_REMOTE, 'Brainix/Epi/IM-0001-0001.dcm') | |
| 2687 UploadInstance(_REMOTE, 'Brainix/Epi/IM-0001-0002.dcm') | |
| 2688 UploadInstance(_REMOTE, 'Brainix/Flair/IM-0001-0001.dcm') | |
| 2689 UploadInstance(_REMOTE, 'Brainix/Flair/IM-0001-0002.dcm') | |
| 2690 | |
| 2691 s = DoPost(_REMOTE, '/tools/create-archive', [ ]) | |
| 2692 z = zipfile.ZipFile(StringIO(s), "r") | |
| 2693 self.assertEqual(0, len(z.namelist())) | |
| 2694 | |
| 2695 # One patient | |
| 2696 s = DoPost(_REMOTE, '/tools/create-archive', [ 'ca29faea-b6a0e17f-067743a1-8b778011-a48b2a17' ]) | |
| 2697 z = zipfile.ZipFile(StringIO(s), "r") | |
| 2698 self.assertEqual(4, len(z.namelist())) | |
| 2699 | |
| 2700 # One patient + twice its study + one series from other patient | |
| 2701 s = DoPost(_REMOTE, '/tools/create-archive', [ | |
| 2702 'ca29faea-b6a0e17f-067743a1-8b778011-a48b2a17', | |
| 2703 '0a9b3153-2512774b-2d9580de-1fc3dcf6-3bd83918', | |
| 2704 '1e2c125c-411b8e86-3f4fe68e-a7584dd3-c6da78f0' | |
| 2705 ]) | |
| 2706 z = zipfile.ZipFile(StringIO(s), "r") | |
| 2707 self.assertEqual(6, len(z.namelist())) | |
| 2708 | |
| 2709 # One patient + one series + one instance | |
| 2710 s = DoPost(_REMOTE, '/tools/create-archive', [ | |
| 2711 'ca29faea-b6a0e17f-067743a1-8b778011-a48b2a17', | |
| 2712 '1e2c125c-411b8e86-3f4fe68e-a7584dd3-c6da78f0', | |
| 2713 '1d429ccb-bdcc78a1-7d129d6a-ba4966ed-fe4dbd87' | |
| 2714 ]) | |
| 2715 z = zipfile.ZipFile(StringIO(s), "r") | |
| 2716 self.assertEqual(7, len(z.namelist())) | |
|
59
84378ada15ab
test_decode_brainix_as_jpeg
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
58
diff
changeset
|
2717 |
|
84378ada15ab
test_decode_brainix_as_jpeg
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
58
diff
changeset
|
2718 |
|
84378ada15ab
test_decode_brainix_as_jpeg
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
58
diff
changeset
|
2719 def test_decode_brainix_as_jpeg(self): |
|
84378ada15ab
test_decode_brainix_as_jpeg
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
58
diff
changeset
|
2720 i = UploadInstance(_REMOTE, 'Brainix/Epi/IM-0001-0001.dcm')['ID'] |
|
84378ada15ab
test_decode_brainix_as_jpeg
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
58
diff
changeset
|
2721 |
|
84378ada15ab
test_decode_brainix_as_jpeg
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
58
diff
changeset
|
2722 j = GetImage(_REMOTE, '/instances/%s/preview' % i) |
|
84378ada15ab
test_decode_brainix_as_jpeg
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
58
diff
changeset
|
2723 self.assertEqual('PNG', j.format) |
|
84378ada15ab
test_decode_brainix_as_jpeg
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
58
diff
changeset
|
2724 self.assertEqual(j.size[0], 256) |
|
84378ada15ab
test_decode_brainix_as_jpeg
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
58
diff
changeset
|
2725 self.assertEqual(j.size[1], 256) |
|
84378ada15ab
test_decode_brainix_as_jpeg
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
58
diff
changeset
|
2726 |
|
84378ada15ab
test_decode_brainix_as_jpeg
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
58
diff
changeset
|
2727 j = GetImage(_REMOTE, '/instances/%s/preview' % i, headers = { 'Accept' : '*/*' }) |
|
84378ada15ab
test_decode_brainix_as_jpeg
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
58
diff
changeset
|
2728 self.assertEqual('PNG', j.format) |
|
84378ada15ab
test_decode_brainix_as_jpeg
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
58
diff
changeset
|
2729 |
|
84378ada15ab
test_decode_brainix_as_jpeg
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
58
diff
changeset
|
2730 j = GetImage(_REMOTE, '/instances/%s/preview' % i, headers = { 'Accept' : 'image/*' }) |
|
84378ada15ab
test_decode_brainix_as_jpeg
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
58
diff
changeset
|
2731 self.assertEqual('PNG', j.format) |
|
84378ada15ab
test_decode_brainix_as_jpeg
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
58
diff
changeset
|
2732 |
|
84378ada15ab
test_decode_brainix_as_jpeg
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
58
diff
changeset
|
2733 j = GetImage(_REMOTE, '/instances/%s/preview' % i, headers = { 'Accept' : 'image/png' }) |
|
84378ada15ab
test_decode_brainix_as_jpeg
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
58
diff
changeset
|
2734 self.assertEqual('PNG', j.format) |
|
84378ada15ab
test_decode_brainix_as_jpeg
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
58
diff
changeset
|
2735 |
|
84378ada15ab
test_decode_brainix_as_jpeg
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
58
diff
changeset
|
2736 j = GetImage(_REMOTE, '/instances/%s/preview' % i, headers = { 'Accept' : 'image/jpeg' }) |
|
84378ada15ab
test_decode_brainix_as_jpeg
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
58
diff
changeset
|
2737 self.assertEqual('JPEG', j.format) |
|
84378ada15ab
test_decode_brainix_as_jpeg
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
58
diff
changeset
|
2738 self.assertEqual(j.size[0], 256) |
|
84378ada15ab
test_decode_brainix_as_jpeg
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
58
diff
changeset
|
2739 self.assertEqual(j.size[1], 256) |
|
84378ada15ab
test_decode_brainix_as_jpeg
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
58
diff
changeset
|
2740 |
|
84378ada15ab
test_decode_brainix_as_jpeg
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
58
diff
changeset
|
2741 a = len(DoGet(_REMOTE, '/instances/%s/preview?quality=50' % i, headers = { 'Accept' : 'image/jpeg' })) |
|
84378ada15ab
test_decode_brainix_as_jpeg
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
58
diff
changeset
|
2742 b = len(DoGet(_REMOTE, '/instances/%s/preview' % i, headers = { 'Accept' : 'image/jpeg' })) |
|
84378ada15ab
test_decode_brainix_as_jpeg
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
58
diff
changeset
|
2743 self.assertLess(a, b) |
|
84378ada15ab
test_decode_brainix_as_jpeg
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
58
diff
changeset
|
2744 |
|
84378ada15ab
test_decode_brainix_as_jpeg
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
58
diff
changeset
|
2745 j = GetImage(_REMOTE, '/instances/%s/image-uint8' % i, headers = { 'Accept' : 'image/jpeg' }) |
|
84378ada15ab
test_decode_brainix_as_jpeg
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
58
diff
changeset
|
2746 self.assertEqual('JPEG', j.format) |
|
84378ada15ab
test_decode_brainix_as_jpeg
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
58
diff
changeset
|
2747 |
|
84378ada15ab
test_decode_brainix_as_jpeg
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
58
diff
changeset
|
2748 # 16bit encoding is not supported with JPEG |
|
84378ada15ab
test_decode_brainix_as_jpeg
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
58
diff
changeset
|
2749 self.assertRaises(Exception, lambda: GetImage(_REMOTE, '/instances/%s/image-uint16' % i, headers = { 'Accept' : 'image/jpeg' })) |
|
84378ada15ab
test_decode_brainix_as_jpeg
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
58
diff
changeset
|
2750 self.assertRaises(Exception, lambda: GetImage(_REMOTE, '/instances/%s/image-int16' % i, headers = { 'Accept' : 'image/jpeg' })) |
|
84378ada15ab
test_decode_brainix_as_jpeg
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
58
diff
changeset
|
2751 |
|
84378ada15ab
test_decode_brainix_as_jpeg
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
58
diff
changeset
|
2752 # No matching content type |
|
84378ada15ab
test_decode_brainix_as_jpeg
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
58
diff
changeset
|
2753 self.assertRaises(Exception, lambda: GetImage(_REMOTE, '/instances/%s/preview' % i, headers = { 'Accept' : 'application/pdf' })) |
|
69
83fd88230097
test_media_encodings
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
68
diff
changeset
|
2754 |
|
83fd88230097
test_media_encodings
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
68
diff
changeset
|
2755 |
|
83fd88230097
test_media_encodings
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
68
diff
changeset
|
2756 |
|
83fd88230097
test_media_encodings
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
68
diff
changeset
|
2757 def test_media_encodings(self): |
|
83fd88230097
test_media_encodings
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
68
diff
changeset
|
2758 ascii = UploadInstance(_REMOTE, 'Knee/T1/IM-0001-0001.dcm')['ID'] |
|
83fd88230097
test_media_encodings
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
68
diff
changeset
|
2759 latin1 = UploadInstance(_REMOTE, 'Brainix/Epi/IM-0001-0001.dcm')['ID'] |
|
83fd88230097
test_media_encodings
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
68
diff
changeset
|
2760 latin2 = UploadInstance(_REMOTE, 'MarekLatin2.dcm')['ID'] |
|
83fd88230097
test_media_encodings
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
68
diff
changeset
|
2761 |
|
83fd88230097
test_media_encodings
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
68
diff
changeset
|
2762 tmp = DoPost(_REMOTE, '/tools/create-media', [ascii,latin1,latin2]) |
|
83fd88230097
test_media_encodings
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
68
diff
changeset
|
2763 z = zipfile.ZipFile(StringIO(tmp), "r") |
|
83fd88230097
test_media_encodings
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
68
diff
changeset
|
2764 |
|
83fd88230097
test_media_encodings
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
68
diff
changeset
|
2765 self.assertEqual(4, len(z.namelist())) |
|
83fd88230097
test_media_encodings
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
68
diff
changeset
|
2766 self.assertTrue('IMAGES/IM0' in z.namelist()) |
|
83fd88230097
test_media_encodings
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
68
diff
changeset
|
2767 self.assertTrue('IMAGES/IM1' in z.namelist()) |
|
83fd88230097
test_media_encodings
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
68
diff
changeset
|
2768 self.assertTrue('IMAGES/IM2' in z.namelist()) |
|
83fd88230097
test_media_encodings
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
68
diff
changeset
|
2769 self.assertTrue('DICOMDIR' in z.namelist()) |
|
83fd88230097
test_media_encodings
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
68
diff
changeset
|
2770 |
|
83fd88230097
test_media_encodings
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
68
diff
changeset
|
2771 try: |
|
83fd88230097
test_media_encodings
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
68
diff
changeset
|
2772 os.remove('/tmp/DICOMDIR') |
|
83fd88230097
test_media_encodings
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
68
diff
changeset
|
2773 except: |
|
83fd88230097
test_media_encodings
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
68
diff
changeset
|
2774 # The file does not exist |
|
83fd88230097
test_media_encodings
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
68
diff
changeset
|
2775 pass |
|
83fd88230097
test_media_encodings
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
68
diff
changeset
|
2776 |
|
83fd88230097
test_media_encodings
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
68
diff
changeset
|
2777 z.extract('DICOMDIR', '/tmp') |
|
83fd88230097
test_media_encodings
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
68
diff
changeset
|
2778 a = subprocess.check_output([ FindExecutable('dciodvfy'), '/tmp/DICOMDIR' ], |
|
83fd88230097
test_media_encodings
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
68
diff
changeset
|
2779 stderr = subprocess.STDOUT).split('\n') |
|
83fd88230097
test_media_encodings
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
68
diff
changeset
|
2780 |
|
83fd88230097
test_media_encodings
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
68
diff
changeset
|
2781 a = subprocess.check_output([ FindExecutable('dcentvfy'), '/tmp/DICOMDIR' ], |
|
83fd88230097
test_media_encodings
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
68
diff
changeset
|
2782 stderr = subprocess.STDOUT).split('\n') |
|
83fd88230097
test_media_encodings
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
68
diff
changeset
|
2783 self.assertEqual(1, len(a)) |
|
83fd88230097
test_media_encodings
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
68
diff
changeset
|
2784 self.assertEqual('', a[0]) |
|
83fd88230097
test_media_encodings
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
68
diff
changeset
|
2785 |
|
83fd88230097
test_media_encodings
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
68
diff
changeset
|
2786 a = subprocess.check_output([ FindExecutable('dcm2xml'), '/tmp/DICOMDIR' ]) |
|
83fd88230097
test_media_encodings
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
68
diff
changeset
|
2787 self.assertTrue(re.search('1.3.46.670589.11.17521.5.0.3124.2008081908590448738', a) != None) |
|
83fd88230097
test_media_encodings
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
68
diff
changeset
|
2788 self.assertTrue(re.search('1.3.46.670589.11.0.0.11.4.2.0.8743.5.5396.2006120114333648576', a) != None) |
|
83fd88230097
test_media_encodings
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
68
diff
changeset
|
2789 self.assertTrue(re.search('1.2.826.0.1.3680043.2.1569.1.4.323026757.1700.1399452091.57', a) != None) |
|
83fd88230097
test_media_encodings
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
68
diff
changeset
|
2790 |
|
83fd88230097
test_media_encodings
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
68
diff
changeset
|
2791 os.remove('/tmp/DICOMDIR') |
|
71
48740070cbf1
TDD: tests for ongoing development of counter tags in C-Find
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
70
diff
changeset
|
2792 |
|
48740070cbf1
TDD: tests for ongoing development of counter tags in C-Find
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
70
diff
changeset
|
2793 |
|
48740070cbf1
TDD: tests for ongoing development of counter tags in C-Find
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
70
diff
changeset
|
2794 def test_findscu_counters(self): |
|
48740070cbf1
TDD: tests for ongoing development of counter tags in C-Find
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
70
diff
changeset
|
2795 UploadInstance(_REMOTE, 'Comunix/Ct/IM-0001-0001.dcm') |
|
48740070cbf1
TDD: tests for ongoing development of counter tags in C-Find
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
70
diff
changeset
|
2796 UploadInstance(_REMOTE, 'Comunix/Pet/IM-0001-0001.dcm') |
|
48740070cbf1
TDD: tests for ongoing development of counter tags in C-Find
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
70
diff
changeset
|
2797 UploadInstance(_REMOTE, 'Comunix/Pet/IM-0001-0002.dcm') |
|
48740070cbf1
TDD: tests for ongoing development of counter tags in C-Find
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
70
diff
changeset
|
2798 |
|
48740070cbf1
TDD: tests for ongoing development of counter tags in C-Find
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
70
diff
changeset
|
2799 i = CallFindScu([ '-k', '0008,0052=PATIENT', '-k', 'NumberOfPatientRelatedStudies' ]) |
|
48740070cbf1
TDD: tests for ongoing development of counter tags in C-Find
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
70
diff
changeset
|
2800 s = re.findall('\(0020,1200\).*?\[(.*?)\]', i) |
|
48740070cbf1
TDD: tests for ongoing development of counter tags in C-Find
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
70
diff
changeset
|
2801 self.assertEqual(1, len(s)) |
|
48740070cbf1
TDD: tests for ongoing development of counter tags in C-Find
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
70
diff
changeset
|
2802 self.assertTrue('1 ' in s) |
|
48740070cbf1
TDD: tests for ongoing development of counter tags in C-Find
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
70
diff
changeset
|
2803 |
|
48740070cbf1
TDD: tests for ongoing development of counter tags in C-Find
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
70
diff
changeset
|
2804 i = CallFindScu([ '-k', '0008,0052=PATIENT', '-k', 'NumberOfPatientRelatedSeries' ]) |
|
48740070cbf1
TDD: tests for ongoing development of counter tags in C-Find
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
70
diff
changeset
|
2805 s = re.findall('\(0020,1202\).*?\[(.*?)\]', i) |
|
48740070cbf1
TDD: tests for ongoing development of counter tags in C-Find
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
70
diff
changeset
|
2806 self.assertEqual(1, len(s)) |
|
48740070cbf1
TDD: tests for ongoing development of counter tags in C-Find
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
70
diff
changeset
|
2807 self.assertTrue('2 ' in s) |
|
48740070cbf1
TDD: tests for ongoing development of counter tags in C-Find
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
70
diff
changeset
|
2808 |
|
48740070cbf1
TDD: tests for ongoing development of counter tags in C-Find
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
70
diff
changeset
|
2809 i = CallFindScu([ '-k', '0008,0052=PATIENT', '-k', 'NumberOfPatientRelatedInstances' ]) |
|
48740070cbf1
TDD: tests for ongoing development of counter tags in C-Find
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
70
diff
changeset
|
2810 s = re.findall('\(0020,1204\).*?\[(.*?)\]', i) |
|
48740070cbf1
TDD: tests for ongoing development of counter tags in C-Find
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
70
diff
changeset
|
2811 self.assertEqual(1, len(s)) |
|
48740070cbf1
TDD: tests for ongoing development of counter tags in C-Find
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
70
diff
changeset
|
2812 self.assertTrue('3 ' in s) |
|
48740070cbf1
TDD: tests for ongoing development of counter tags in C-Find
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
70
diff
changeset
|
2813 |
|
48740070cbf1
TDD: tests for ongoing development of counter tags in C-Find
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
70
diff
changeset
|
2814 i = CallFindScu([ '-k', '0008,0052=STUDY', '-k', 'NumberOfStudyRelatedSeries' ]) |
|
48740070cbf1
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parents:
70
diff
changeset
|
2815 s = re.findall('\(0020,1206\).*?\[(.*?)\]', i) |
|
48740070cbf1
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parents:
70
diff
changeset
|
2816 self.assertEqual(1, len(s)) |
|
48740070cbf1
TDD: tests for ongoing development of counter tags in C-Find
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parents:
70
diff
changeset
|
2817 self.assertTrue('2 ' in s) |
|
48740070cbf1
TDD: tests for ongoing development of counter tags in C-Find
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
70
diff
changeset
|
2818 |
|
48740070cbf1
TDD: tests for ongoing development of counter tags in C-Find
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parents:
70
diff
changeset
|
2819 i = CallFindScu([ '-k', '0008,0052=STUDY', '-k', 'NumberOfStudyRelatedInstances' ]) |
|
48740070cbf1
TDD: tests for ongoing development of counter tags in C-Find
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
70
diff
changeset
|
2820 s = re.findall('\(0020,1208\).*?\[(.*?)\]', i) |
|
48740070cbf1
TDD: tests for ongoing development of counter tags in C-Find
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
70
diff
changeset
|
2821 self.assertEqual(1, len(s)) |
|
48740070cbf1
TDD: tests for ongoing development of counter tags in C-Find
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
70
diff
changeset
|
2822 self.assertTrue('3 ' in s) |
|
48740070cbf1
TDD: tests for ongoing development of counter tags in C-Find
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
70
diff
changeset
|
2823 |
|
48740070cbf1
TDD: tests for ongoing development of counter tags in C-Find
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
70
diff
changeset
|
2824 i = CallFindScu([ '-k', '0008,0052=SERIES', '-k', 'NumberOfSeriesRelatedInstances' ]) |
|
48740070cbf1
TDD: tests for ongoing development of counter tags in C-Find
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
70
diff
changeset
|
2825 s = re.findall('\(0020,1209\).*?\[(.*?)\]', i) |
|
48740070cbf1
TDD: tests for ongoing development of counter tags in C-Find
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
70
diff
changeset
|
2826 self.assertEqual(2, len(s)) |
|
48740070cbf1
TDD: tests for ongoing development of counter tags in C-Find
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
70
diff
changeset
|
2827 self.assertTrue('1 ' in s) |
|
48740070cbf1
TDD: tests for ongoing development of counter tags in C-Find
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
70
diff
changeset
|
2828 self.assertTrue('2 ' in s) |
|
48740070cbf1
TDD: tests for ongoing development of counter tags in C-Find
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
70
diff
changeset
|
2829 |
|
48740070cbf1
TDD: tests for ongoing development of counter tags in C-Find
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
70
diff
changeset
|
2830 i = CallFindScu([ '-k', '0008,0052=STUDY', '-k', 'ModalitiesInStudy' ]) |
|
48740070cbf1
TDD: tests for ongoing development of counter tags in C-Find
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
70
diff
changeset
|
2831 s = re.findall('\(0008,0061\).*?\[(.*?)\]', i) |
|
48740070cbf1
TDD: tests for ongoing development of counter tags in C-Find
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
70
diff
changeset
|
2832 self.assertEqual(1, len(s)) |
|
48740070cbf1
TDD: tests for ongoing development of counter tags in C-Find
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
70
diff
changeset
|
2833 t = map(lambda x: x.strip(), s[0].split('\\')) |
|
48740070cbf1
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Sebastien Jodogne <s.jodogne@gmail.com>
parents:
70
diff
changeset
|
2834 self.assertTrue('PT' in t) |
|
48740070cbf1
TDD: tests for ongoing development of counter tags in C-Find
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
70
diff
changeset
|
2835 self.assertTrue('CT' in t) |
|
48740070cbf1
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Sebastien Jodogne <s.jodogne@gmail.com>
parents:
70
diff
changeset
|
2836 |
|
48740070cbf1
TDD: tests for ongoing development of counter tags in C-Find
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
70
diff
changeset
|
2837 i = CallFindScu([ '-k', '0008,0052=STUDY', '-k', 'SOPClassesInStudy' ]) |
|
48740070cbf1
TDD: tests for ongoing development of counter tags in C-Find
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
70
diff
changeset
|
2838 s = re.findall('\(0008,0062\).*?\[(.*?)\]', i) |
|
48740070cbf1
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Sebastien Jodogne <s.jodogne@gmail.com>
parents:
70
diff
changeset
|
2839 self.assertEqual(1, len(s)) |
|
48740070cbf1
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Sebastien Jodogne <s.jodogne@gmail.com>
parents:
70
diff
changeset
|
2840 t = map(lambda x: x.strip(), s[0].split('\\')) |
|
48740070cbf1
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Sebastien Jodogne <s.jodogne@gmail.com>
parents:
70
diff
changeset
|
2841 self.assertTrue('1.2.840.10008.5.1.4.1.1.2' in t) |
|
48740070cbf1
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Sebastien Jodogne <s.jodogne@gmail.com>
parents:
70
diff
changeset
|
2842 self.assertTrue('1.2.840.10008.5.1.4.1.1.128' in t) |
|
48740070cbf1
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parents:
70
diff
changeset
|
2843 |
|
48740070cbf1
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parents:
70
diff
changeset
|
2844 |
|
78
b89af51797ff
test_decode_transfer_syntax
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
74
diff
changeset
|
2845 def test_decode_transfer_syntax(self): |
|
b89af51797ff
test_decode_transfer_syntax
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
74
diff
changeset
|
2846 def Check(t, md5): |
|
b89af51797ff
test_decode_transfer_syntax
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
74
diff
changeset
|
2847 i = UploadInstance(_REMOTE, 'TransferSyntaxes/%s.dcm' % t)['ID'] |
|
b89af51797ff
test_decode_transfer_syntax
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parents:
74
diff
changeset
|
2848 |
|
89
74b7b9aed5f8
test TransferSyntax metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
87
diff
changeset
|
2849 if t != '1.2.840.10008.1.2': # This file has no meta header |
|
74b7b9aed5f8
test TransferSyntax metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
87
diff
changeset
|
2850 transferSyntax = DoGet(_REMOTE, '/instances/%s/metadata/TransferSyntax' % i) |
|
74b7b9aed5f8
test TransferSyntax metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
87
diff
changeset
|
2851 self.assertEqual(t, transferSyntax) |
|
74b7b9aed5f8
test TransferSyntax metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
87
diff
changeset
|
2852 |
|
78
b89af51797ff
test_decode_transfer_syntax
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
74
diff
changeset
|
2853 if md5 == None: |
|
b89af51797ff
test_decode_transfer_syntax
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
74
diff
changeset
|
2854 self.assertRaises(Exception, lambda: DoGet(_REMOTE, '/instances/%s/preview' % i)) |
|
b89af51797ff
test_decode_transfer_syntax
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
74
diff
changeset
|
2855 else: |
|
b89af51797ff
test_decode_transfer_syntax
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
74
diff
changeset
|
2856 m = ComputeMD5(DoGet(_REMOTE, '/instances/%s/preview' % i)) |
|
b89af51797ff
test_decode_transfer_syntax
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
74
diff
changeset
|
2857 self.assertEqual(m, md5) |
|
b89af51797ff
test_decode_transfer_syntax
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
74
diff
changeset
|
2858 |
|
b89af51797ff
test_decode_transfer_syntax
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
74
diff
changeset
|
2859 Check('1.2.840.10008.1.2.1', 'fae08d5415c4c0cd2cdbae4522408631') |
|
b89af51797ff
test_decode_transfer_syntax
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
74
diff
changeset
|
2860 Check('1.2.840.10008.1.2.2', 'f3d9784768b8feb54d6a50b6d5c37682') |
|
b89af51797ff
test_decode_transfer_syntax
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
74
diff
changeset
|
2861 Check('1.2.840.10008.1.2.4.50', '496326046974eea718dbc16b997c646b') |
|
b89af51797ff
test_decode_transfer_syntax
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
74
diff
changeset
|
2862 Check('1.2.840.10008.1.2.4.51', 'ccbe75909fe5c9f7361b48416a53fc41') |
|
b89af51797ff
test_decode_transfer_syntax
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
74
diff
changeset
|
2863 Check('1.2.840.10008.1.2.4.57', '7bbefe11d976b1be4e568915c6a82fc3') |
|
b89af51797ff
test_decode_transfer_syntax
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
74
diff
changeset
|
2864 Check('1.2.840.10008.1.2.4.70', '7132cfbc457305b04b59787030c785d2') |
|
b89af51797ff
test_decode_transfer_syntax
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
74
diff
changeset
|
2865 Check('1.2.840.10008.1.2.4.80', '6ff51ae525d362e0d04f550a64075a0e') |
|
b89af51797ff
test_decode_transfer_syntax
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
74
diff
changeset
|
2866 Check('1.2.840.10008.1.2.4.81', '801579ae7cbf28e604ea74f2c99fa2ca') |
|
b89af51797ff
test_decode_transfer_syntax
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
74
diff
changeset
|
2867 Check('1.2.840.10008.1.2.5', '6ff51ae525d362e0d04f550a64075a0e') # RLE, supported since Orthanc 1.0.1 |
|
b89af51797ff
test_decode_transfer_syntax
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
74
diff
changeset
|
2868 Check('1.2.840.10008.1.2', 'd54aed9f67a100984b42942cc2e9939b') |
|
b89af51797ff
test_decode_transfer_syntax
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
74
diff
changeset
|
2869 Check('1.2.840.10008.1.2.4.90', None) # JPEG-2000 image, not supported |
|
b89af51797ff
test_decode_transfer_syntax
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
74
diff
changeset
|
2870 Check('1.2.840.10008.1.2.4.91', None) # JPEG-2000 image, not supported |
| 79 | 2871 |
| 2872 | |
| 2873 def test_raw_frame(self): | |
| 2874 s = UploadInstance(_REMOTE, 'Issue22.dcm')['ID'] | |
| 2875 self.assertEqual(24, len(DoGet(_REMOTE, '/instances/%s/frames' % s))) | |
| 2876 a = DoGet(_REMOTE, '/instances/%s/frames/0/raw' % s) | |
| 2877 self.assertEqual(512 * 512 * 2, len(a)) | |
| 2878 self.assertEqual(512 * 512 * 2, len(DoGet(_REMOTE, '/instances/%s/frames/23/raw' % s))) | |
| 2879 self.assertRaises(Exception, lambda: DoGet(_REMOTE, '/instances/%s/frames/24/raw' % s)) | |
| 2880 self.assertEqual('1914287dc4d958eca21fdaacfb3482fa', ComputeMD5(a)) | |
| 2881 | |
| 2882 s = UploadInstance(_REMOTE, 'Multiframe.dcm')['ID'] | |
| 2883 self.assertEqual(76, len(DoGet(_REMOTE, '/instances/%s/frames' % s))) | |
| 2884 self.assertEqual(186274, len(DoGet(_REMOTE, '/instances/%s/frames/0/raw' % s))) | |
| 2885 self.assertEqual(189424, len(DoGet(_REMOTE, '/instances/%s/frames/75/raw' % s))) | |
| 2886 self.assertRaises(Exception, lambda: DoGet(_REMOTE, '/instances/%s/frames/76/raw' % s)) | |
| 2887 im = GetImage(_REMOTE, '/instances/%s/frames/0/raw' % s) | |
| 2888 self.assertEqual("L", im.mode) | |
| 2889 self.assertEqual(512, im.size[0]) | |
| 2890 self.assertEqual(512, im.size[1]) | |
| 2891 | |
| 2892 # Test an image with 2 JPEG frames spread over multiple fragments | |
| 2893 s = UploadInstance(_REMOTE, 'LenaTwiceWithFragments.dcm')['ID'] | |
| 2894 self.assertEqual(2, len(DoGet(_REMOTE, '/instances/%s/frames' % s))) | |
| 2895 a = DoGet(_REMOTE, '/instances/%s/frames/0/raw' % s) | |
| 2896 b = DoGet(_REMOTE, '/instances/%s/frames/1/raw' % s) | |
| 2897 self.assertEqual(69214, len(a)) | |
| 2898 self.assertEqual(ComputeMD5(a), ComputeMD5(b)) | |
| 2899 self.assertRaises(Exception, lambda: DoGet(_REMOTE, '/instances/%s/frames/2/raw' % s)) | |
| 2900 im = GetImage(_REMOTE, '/instances/%s/frames/0/raw' % s) | |
| 2901 self.assertEqual("RGB", im.mode) | |
| 2902 self.assertEqual(512, im.size[0]) | |
| 2903 self.assertEqual(512, im.size[1]) | |
| 2904 im = GetImage(_REMOTE, '/instances/%s/frames/0/preview' % s) | |
| 2905 self.assertEqual("RGB", im.mode) | |
| 2906 self.assertEqual(512, im.size[0]) | |
| 2907 self.assertEqual(512, im.size[1]) | |
| 81 | 2908 |
| 2909 | |
| 2910 | |
| 2911 def test_rest_movescu(self): | |
| 2912 self.assertEqual(0, len(DoGet(_REMOTE, '/patients'))) | |
| 2913 | |
| 2914 # Upload 4 instances | |
| 2915 UploadInstance(_REMOTE, 'Brainix/Flair/IM-0001-0001.dcm') | |
| 2916 UploadInstance(_REMOTE, 'Brainix/Flair/IM-0001-0002.dcm') | |
| 2917 UploadInstance(_REMOTE, 'Brainix/Epi/IM-0001-0001.dcm') | |
| 2918 UploadInstance(_REMOTE, 'Knee/T2/IM-0001-0001.dcm') | |
| 2919 | |
| 2920 self.assertEqual(2, len(DoGet(_REMOTE, '/patients'))) | |
| 2921 for p in DoGet(_REMOTE, '/patients'): | |
| 2922 DoPost(_REMOTE, '/modalities/orthanctest/store', p) | |
| 2923 DoDelete(_REMOTE, '/patients/%s' % p) | |
| 2924 | |
| 2925 self.assertEqual(0, len(DoGet(_REMOTE, '/patients'))) | |
| 2926 | |
| 2927 # Upload instance Brainix/Flair/IM-0001-0001.dcm | |
| 2928 DoPost(_REMOTE, '/modalities/orthanctest/move', { 'Level' : 'Instance', | |
| 2929 'Resources' : [ | |
| 2930 { | |
| 2931 'StudyInstanceUID' : '2.16.840.1.113669.632.20.1211.10000357775', | |
| 2932 'SeriesInstanceUID' : '1.3.46.670589.11.0.0.11.4.2.0.8743.5.5396.2006120114285654497', | |
| 2933 'SOPInstanceUID' : '1.3.46.670589.11.0.0.11.4.2.0.8743.5.5396.2006120114314079549', | |
| 2934 } | |
| 2935 ]}) | |
| 2936 | |
| 2937 # Upload series Brainix/Flair/* | |
| 2938 self.assertEqual(1, len(DoGet(_REMOTE, '/patients'))) | |
| 2939 self.assertEqual(1, len(DoGet(_REMOTE, '/studies'))) | |
| 2940 self.assertEqual(1, len(DoGet(_REMOTE, '/series'))) | |
| 2941 self.assertEqual(1, len(DoGet(_REMOTE, '/instances'))) | |
| 2942 | |
| 2943 DoPost(_REMOTE, '/modalities/orthanctest/move', { 'Level' : 'Series', | |
| 2944 'Resources' : [ | |
| 2945 { | |
| 2946 'StudyInstanceUID' : '2.16.840.1.113669.632.20.1211.10000357775', | |
| 2947 'SeriesInstanceUID' : '1.3.46.670589.11.0.0.11.4.2.0.8743.5.5396.2006120114285654497', | |
| 2948 } | |
| 2949 ]}) | |
| 2950 self.assertEqual(1, len(DoGet(_REMOTE, '/patients'))) | |
| 2951 self.assertEqual(1, len(DoGet(_REMOTE, '/studies'))) | |
| 2952 self.assertEqual(1, len(DoGet(_REMOTE, '/series'))) | |
| 2953 self.assertEqual(2, len(DoGet(_REMOTE, '/instances'))) | |
| 2954 | |
| 2955 # Upload series Brainix/Epi/* | |
| 2956 DoPost(_REMOTE, '/modalities/orthanctest/move', { 'Level' : 'Series', | |
| 2957 'Resources' : [ | |
| 2958 { | |
| 2959 'StudyInstanceUID' : '2.16.840.1.113669.632.20.1211.10000357775', | |
| 2960 'SeriesInstanceUID' : '1.3.46.670589.11.0.0.11.4.2.0.8743.5.5396.2006120114314125550', | |
| 2961 } | |
| 2962 ]}) | |
| 2963 self.assertEqual(1, len(DoGet(_REMOTE, '/patients'))) | |
| 2964 self.assertEqual(1, len(DoGet(_REMOTE, '/studies'))) | |
| 2965 self.assertEqual(2, len(DoGet(_REMOTE, '/series'))) | |
| 2966 self.assertEqual(3, len(DoGet(_REMOTE, '/instances'))) | |
| 2967 | |
| 2968 # Upload study Knee/* | |
| 2969 DoPost(_REMOTE, '/modalities/orthanctest/move', { 'Level' : 'Study', | |
| 2970 'Resources' : [ | |
| 2971 { | |
| 2972 'StudyInstanceUID' : '2.16.840.1.113669.632.20.121711.10000160881', | |
| 2973 } | |
| 2974 ]}) | |
| 2975 self.assertEqual(2, len(DoGet(_REMOTE, '/patients'))) | |
| 2976 self.assertEqual(2, len(DoGet(_REMOTE, '/studies'))) | |
| 2977 self.assertEqual(3, len(DoGet(_REMOTE, '/series'))) | |
| 2978 self.assertEqual(4, len(DoGet(_REMOTE, '/instances'))) | |
| 2979 | |
| 2980 # Reset | |
| 2981 for p in DoGet(_REMOTE, '/patients'): | |
| 2982 DoDelete(_REMOTE, '/patients/%s' % p) | |
| 2983 | |
| 2984 self.assertEqual(0, len(DoGet(_REMOTE, '/patients'))) | |
| 2985 | |
| 2986 | |
| 2987 # Upload all at once | |
| 2988 DoPost(_REMOTE, '/modalities/orthanctest/move', { 'Level' : 'Study', | |
| 2989 'Resources' : [ | |
| 2990 { | |
| 2991 'StudyInstanceUID' : '2.16.840.1.113669.632.20.121711.10000160881', | |
| 2992 }, | |
| 2993 { | |
| 2994 'StudyInstanceUID' : '2.16.840.1.113669.632.20.1211.10000357775', | |
| 2995 } | |
| 2996 ]}) | |
| 2997 self.assertEqual(2, len(DoGet(_REMOTE, '/patients'))) | |
| 2998 self.assertEqual(2, len(DoGet(_REMOTE, '/studies'))) | |
| 2999 self.assertEqual(3, len(DoGet(_REMOTE, '/series'))) | |
| 3000 self.assertEqual(4, len(DoGet(_REMOTE, '/instances'))) | |
| 3001 | |
|
86
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test_reconstruct_json
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parents:
83
diff
changeset
|
3002 |
|
0401ef51f5c1
test_reconstruct_json
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parents:
83
diff
changeset
|
3003 |
|
0401ef51f5c1
test_reconstruct_json
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
83
diff
changeset
|
3004 def test_reconstruct_json(self): |
|
0401ef51f5c1
test_reconstruct_json
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
83
diff
changeset
|
3005 self.assertEqual(0, len(DoGet(_REMOTE, '/patients'))) |
|
0401ef51f5c1
test_reconstruct_json
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
83
diff
changeset
|
3006 |
|
0401ef51f5c1
test_reconstruct_json
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
83
diff
changeset
|
3007 instance = UploadInstance(_REMOTE, 'DummyCT.dcm')['ID'] |
|
0401ef51f5c1
test_reconstruct_json
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parents:
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diff
changeset
|
3008 first = DoGet(_REMOTE, '/instances/%s/tags' % instance) |
|
0401ef51f5c1
test_reconstruct_json
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
83
diff
changeset
|
3009 |
|
0401ef51f5c1
test_reconstruct_json
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
83
diff
changeset
|
3010 self.assertEqual('TWINOW', first['0008,1010']['Value']) |
|
0401ef51f5c1
test_reconstruct_json
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
83
diff
changeset
|
3011 self.assertEqual(2, len(DoGet(_REMOTE, '/instances/%s/attachments' % instance))) |
|
0401ef51f5c1
test_reconstruct_json
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
83
diff
changeset
|
3012 |
|
0401ef51f5c1
test_reconstruct_json
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
83
diff
changeset
|
3013 # Cannot delete the "DICOM" attachment |
|
0401ef51f5c1
test_reconstruct_json
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
83
diff
changeset
|
3014 self.assertRaises(Exception, lambda: DoDelete(_REMOTE, '/instances/%s/attachments/dicom' % instance)) |
|
0401ef51f5c1
test_reconstruct_json
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
83
diff
changeset
|
3015 |
|
0401ef51f5c1
test_reconstruct_json
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
83
diff
changeset
|
3016 # Can delete the "DICOM as JSON" attachment |
|
0401ef51f5c1
test_reconstruct_json
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
83
diff
changeset
|
3017 r = DoDelete(_REMOTE, '/instances/%s/attachments/dicom-as-json' % instance) |
|
0401ef51f5c1
test_reconstruct_json
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
83
diff
changeset
|
3018 self.assertTrue(type(r) is dict and len(r) == 0) |
|
0401ef51f5c1
test_reconstruct_json
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
83
diff
changeset
|
3019 |
|
0401ef51f5c1
test_reconstruct_json
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
83
diff
changeset
|
3020 # Only the "DICOM" attachment subsists |
|
0401ef51f5c1
test_reconstruct_json
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
83
diff
changeset
|
3021 self.assertEqual(1, len(DoGet(_REMOTE, '/instances/%s/attachments' % instance))) |
|
0401ef51f5c1
test_reconstruct_json
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
83
diff
changeset
|
3022 |
|
0401ef51f5c1
test_reconstruct_json
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
83
diff
changeset
|
3023 # Cannot manually reconstruct the "DICOM as JSON" attachment |
|
0401ef51f5c1
test_reconstruct_json
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
83
diff
changeset
|
3024 self.assertRaises(Exception, lambda: DoPut(_REMOTE, '/patients/%s/attachments/dicom-as-json' % patient, 'hello')) |
|
0401ef51f5c1
test_reconstruct_json
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
83
diff
changeset
|
3025 |
|
0401ef51f5c1
test_reconstruct_json
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
83
diff
changeset
|
3026 # Transparently reconstruct the "DICOM as JSON" attachment |
|
0401ef51f5c1
test_reconstruct_json
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
83
diff
changeset
|
3027 self.assertRaises(Exception, lambda: DoGet(_REMOTE, '/instances/%s/attachments/dicom-as-json' % instance)) |
|
0401ef51f5c1
test_reconstruct_json
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
83
diff
changeset
|
3028 second = DoGet(_REMOTE, '/instances/%s/tags' % instance) |
|
0401ef51f5c1
test_reconstruct_json
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
83
diff
changeset
|
3029 self.assertEqual(2, len(DoGet(_REMOTE, '/instances/%s/attachments' % instance))) |
|
0401ef51f5c1
test_reconstruct_json
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
83
diff
changeset
|
3030 |
|
0401ef51f5c1
test_reconstruct_json
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
83
diff
changeset
|
3031 third = DoGet(_REMOTE, '/instances/%s/attachments/dicom-as-json/data' % instance) |
|
0401ef51f5c1
test_reconstruct_json
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
83
diff
changeset
|
3032 self.assertEqual(str(first), str(second)) |
|
0401ef51f5c1
test_reconstruct_json
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
83
diff
changeset
|
3033 self.assertEqual(str(first), str(third)) |
|
87
4b24faec842b
test_reconstruct_json2 + test_private_tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
86
diff
changeset
|
3034 |
|
4b24faec842b
test_reconstruct_json2 + test_private_tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
86
diff
changeset
|
3035 |
|
4b24faec842b
test_reconstruct_json2 + test_private_tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
86
diff
changeset
|
3036 def test_reconstruct_json2(self): |
|
4b24faec842b
test_reconstruct_json2 + test_private_tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
86
diff
changeset
|
3037 self.assertEqual(0, len(DoGet(_REMOTE, '/patients'))) |
|
4b24faec842b
test_reconstruct_json2 + test_private_tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
86
diff
changeset
|
3038 |
|
4b24faec842b
test_reconstruct_json2 + test_private_tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
86
diff
changeset
|
3039 a = UploadInstance(_REMOTE, 'Brainix/Flair/IM-0001-0001.dcm')['ID'] |
|
4b24faec842b
test_reconstruct_json2 + test_private_tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
86
diff
changeset
|
3040 b = UploadInstance(_REMOTE, 'Knee/T2/IM-0001-0001.dcm')['ID'] |
|
4b24faec842b
test_reconstruct_json2 + test_private_tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
86
diff
changeset
|
3041 |
|
4b24faec842b
test_reconstruct_json2 + test_private_tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
86
diff
changeset
|
3042 self.assertEqual('BRAINIX', DoGet(_REMOTE, '/instances/%s/tags?simplify' % a)['PatientName']) |
|
4b24faec842b
test_reconstruct_json2 + test_private_tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
86
diff
changeset
|
3043 self.assertEqual('KNEE', DoGet(_REMOTE, '/instances/%s/tags?simplify' % b)['PatientName']) |
|
4b24faec842b
test_reconstruct_json2 + test_private_tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
86
diff
changeset
|
3044 |
|
4b24faec842b
test_reconstruct_json2 + test_private_tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
86
diff
changeset
|
3045 self.assertEqual(2, len(DoGet(_REMOTE, '/instances/%s/attachments' % a))) |
|
4b24faec842b
test_reconstruct_json2 + test_private_tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
86
diff
changeset
|
3046 self.assertEqual(2, len(DoGet(_REMOTE, '/instances/%s/attachments' % b))) |
|
4b24faec842b
test_reconstruct_json2 + test_private_tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
86
diff
changeset
|
3047 |
|
4b24faec842b
test_reconstruct_json2 + test_private_tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
86
diff
changeset
|
3048 DoPost(_REMOTE, '/tools/invalidate-tags', '', 'text/plain') |
|
4b24faec842b
test_reconstruct_json2 + test_private_tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
86
diff
changeset
|
3049 |
|
4b24faec842b
test_reconstruct_json2 + test_private_tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
86
diff
changeset
|
3050 self.assertEqual(1, len(DoGet(_REMOTE, '/instances/%s/attachments' % a))) |
|
4b24faec842b
test_reconstruct_json2 + test_private_tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
86
diff
changeset
|
3051 self.assertEqual(1, len(DoGet(_REMOTE, '/instances/%s/attachments' % b))) |
|
4b24faec842b
test_reconstruct_json2 + test_private_tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
86
diff
changeset
|
3052 |
|
4b24faec842b
test_reconstruct_json2 + test_private_tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
86
diff
changeset
|
3053 self.assertEqual('BRAINIX', DoGet(_REMOTE, '/instances/%s/tags?simplify' % a)['PatientName']) |
|
4b24faec842b
test_reconstruct_json2 + test_private_tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
86
diff
changeset
|
3054 self.assertEqual('KNEE', DoGet(_REMOTE, '/instances/%s/tags?simplify' % b)['PatientName']) |
|
4b24faec842b
test_reconstruct_json2 + test_private_tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
86
diff
changeset
|
3055 |
|
4b24faec842b
test_reconstruct_json2 + test_private_tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
86
diff
changeset
|
3056 self.assertEqual(2, len(DoGet(_REMOTE, '/instances/%s/attachments' % a))) |
|
4b24faec842b
test_reconstruct_json2 + test_private_tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
86
diff
changeset
|
3057 self.assertEqual(2, len(DoGet(_REMOTE, '/instances/%s/attachments' % b))) |
|
4b24faec842b
test_reconstruct_json2 + test_private_tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
86
diff
changeset
|
3058 |
|
4b24faec842b
test_reconstruct_json2 + test_private_tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
86
diff
changeset
|
3059 |
|
4b24faec842b
test_reconstruct_json2 + test_private_tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
86
diff
changeset
|
3060 def test_private_tags(self): |
|
4b24faec842b
test_reconstruct_json2 + test_private_tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
86
diff
changeset
|
3061 i = UploadInstance(_REMOTE, 'PrivateMDNTags.dcm')['ID'] |
|
4b24faec842b
test_reconstruct_json2 + test_private_tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
86
diff
changeset
|
3062 t = DoGet(_REMOTE, '/instances/%s/tags?simplify' % i) |
|
4b24faec842b
test_reconstruct_json2 + test_private_tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
86
diff
changeset
|
3063 self.assertEqual('1.2.840.113704.1.111.6320.1342451261.21', t['PET-CT Multi Modality Name']) |
|
4b24faec842b
test_reconstruct_json2 + test_private_tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
86
diff
changeset
|
3064 self.assertEqual('p37s0_na_ctac.img', t['Original Image Filename']) |
|
4b24faec842b
test_reconstruct_json2 + test_private_tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
86
diff
changeset
|
3065 |
|
92
dbcbffb889da
test_findscu_encoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
89
diff
changeset
|
3066 |
|
dbcbffb889da
test_findscu_encoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
89
diff
changeset
|
3067 def test_findscu_encoding(self): |
|
dbcbffb889da
test_findscu_encoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
89
diff
changeset
|
3068 # Check out ../Database/Encodings/Generate.sh |
|
dbcbffb889da
test_findscu_encoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
89
diff
changeset
|
3069 TEST = u'Test-éüäöòДΘĝדصķћ๛ﾈİ' |
|
dbcbffb889da
test_findscu_encoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
89
diff
changeset
|
3070 ENCODINGS = { |
|
dbcbffb889da
test_findscu_encoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
89
diff
changeset
|
3071 'Arabic' : [ 'ISO_IR 127' ], |
|
dbcbffb889da
test_findscu_encoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
89
diff
changeset
|
3072 'Ascii' : [ 'ISO_IR 6' ], # More accurately, ISO 646 |
|
dbcbffb889da
test_findscu_encoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
89
diff
changeset
|
3073 'Cyrillic' : [ 'ISO_IR 144' ], |
|
dbcbffb889da
test_findscu_encoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
89
diff
changeset
|
3074 'Greek' : [ 'ISO_IR 126' ], |
|
dbcbffb889da
test_findscu_encoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
89
diff
changeset
|
3075 'Hebrew' : [ 'ISO_IR 138' ], |
|
dbcbffb889da
test_findscu_encoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
89
diff
changeset
|
3076 'Japanese' : [ 'ISO_IR 13', 'shift-jis' ], |
|
dbcbffb889da
test_findscu_encoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
89
diff
changeset
|
3077 'Latin1' : [ 'ISO_IR 100' ], |
|
dbcbffb889da
test_findscu_encoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
89
diff
changeset
|
3078 'Latin2' : [ 'ISO_IR 101' ], |
|
dbcbffb889da
test_findscu_encoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
89
diff
changeset
|
3079 'Latin3' : [ 'ISO_IR 109' ], |
|
dbcbffb889da
test_findscu_encoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
89
diff
changeset
|
3080 'Latin4' : [ 'ISO_IR 110' ], |
|
dbcbffb889da
test_findscu_encoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
89
diff
changeset
|
3081 'Latin5' : [ 'ISO_IR 148' ], |
|
dbcbffb889da
test_findscu_encoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
89
diff
changeset
|
3082 'Thai' : [ 'ISO_IR 166', 'tis-620' ], |
|
dbcbffb889da
test_findscu_encoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
89
diff
changeset
|
3083 'Utf8' : [ 'ISO_IR 192' ], |
|
dbcbffb889da
test_findscu_encoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
89
diff
changeset
|
3084 } |
|
dbcbffb889da
test_findscu_encoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
89
diff
changeset
|
3085 |
|
dbcbffb889da
test_findscu_encoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
89
diff
changeset
|
3086 for name in ENCODINGS.iterkeys(): |
|
dbcbffb889da
test_findscu_encoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
89
diff
changeset
|
3087 if len(ENCODINGS[name]) == 1: |
|
dbcbffb889da
test_findscu_encoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
89
diff
changeset
|
3088 ENCODINGS[name].append(name.lower()) |
|
dbcbffb889da
test_findscu_encoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
89
diff
changeset
|
3089 |
|
dbcbffb889da
test_findscu_encoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
89
diff
changeset
|
3090 UploadInstance(_REMOTE, 'Encodings/Lena-utf8.dcm') |
|
dbcbffb889da
test_findscu_encoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
89
diff
changeset
|
3091 |
|
dbcbffb889da
test_findscu_encoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
89
diff
changeset
|
3092 for name in ENCODINGS.iterkeys(): |
|
dbcbffb889da
test_findscu_encoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
89
diff
changeset
|
3093 self.assertEqual(name, DoPut(_REMOTE, '/tools/default-encoding', name)) |
|
dbcbffb889da
test_findscu_encoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
89
diff
changeset
|
3094 self.assertEqual(name, DoGet(_REMOTE, '/tools/default-encoding')) |
|
dbcbffb889da
test_findscu_encoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
89
diff
changeset
|
3095 |
|
dbcbffb889da
test_findscu_encoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
89
diff
changeset
|
3096 i = CallFindScu([ '-k', '0008,0052=STUDY', |
|
dbcbffb889da
test_findscu_encoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
89
diff
changeset
|
3097 '-k', 'SpecificCharacterSet', |
|
dbcbffb889da
test_findscu_encoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
89
diff
changeset
|
3098 '-k', 'PatientName' ]) |
|
dbcbffb889da
test_findscu_encoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
89
diff
changeset
|
3099 |
|
dbcbffb889da
test_findscu_encoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
89
diff
changeset
|
3100 characterSet = re.findall('\(0008,0005\).*?\[(.*?)\]', i) |
|
dbcbffb889da
test_findscu_encoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
89
diff
changeset
|
3101 self.assertEqual(1, len(characterSet)) |
|
dbcbffb889da
test_findscu_encoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
89
diff
changeset
|
3102 self.assertEqual(ENCODINGS[name][0], characterSet[0].strip()) |
|
dbcbffb889da
test_findscu_encoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
89
diff
changeset
|
3103 |
|
dbcbffb889da
test_findscu_encoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
89
diff
changeset
|
3104 patientName = re.findall('\(0010,0010\).*?\[(.*?)\]', i) |
|
dbcbffb889da
test_findscu_encoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
89
diff
changeset
|
3105 self.assertEqual(1, len(patientName)) |
|
dbcbffb889da
test_findscu_encoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
89
diff
changeset
|
3106 |
|
dbcbffb889da
test_findscu_encoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
89
diff
changeset
|
3107 expected = TEST.encode(ENCODINGS[name][1], 'ignore') |
|
dbcbffb889da
test_findscu_encoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
89
diff
changeset
|
3108 self.assertEqual(expected, patientName[0].strip()) |
|
dbcbffb889da
test_findscu_encoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
89
diff
changeset
|
3109 |
|
dbcbffb889da
test_findscu_encoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
89
diff
changeset
|
3110 |
|
dbcbffb889da
test_findscu_encoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
89
diff
changeset
|
3111 #for master in ENCODINGS: |
|
dbcbffb889da
test_findscu_encoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
89
diff
changeset
|
3112 for master in [ 'Latin1', 'Utf8', 'Cyrillic' ]: # Shortcut to speedup tests |
|
dbcbffb889da
test_findscu_encoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
89
diff
changeset
|
3113 self.assertEqual(master, DoPut(_REMOTE, '/tools/default-encoding', master)) |
|
dbcbffb889da
test_findscu_encoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
89
diff
changeset
|
3114 self.assertEqual(master, DoGet(_REMOTE, '/tools/default-encoding')) |
|
dbcbffb889da
test_findscu_encoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
89
diff
changeset
|
3115 |
|
dbcbffb889da
test_findscu_encoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
89
diff
changeset
|
3116 for name in ENCODINGS: |
|
dbcbffb889da
test_findscu_encoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
89
diff
changeset
|
3117 DropOrthanc(_REMOTE) |
|
dbcbffb889da
test_findscu_encoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
89
diff
changeset
|
3118 UploadInstance(_REMOTE, 'Encodings/Lena-%s.dcm' % ENCODINGS[name][1]) |
|
dbcbffb889da
test_findscu_encoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
89
diff
changeset
|
3119 |
|
dbcbffb889da
test_findscu_encoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
89
diff
changeset
|
3120 i = CallFindScu([ '-k', '0008,0052=STUDY', |
|
dbcbffb889da
test_findscu_encoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
89
diff
changeset
|
3121 '-k', 'PatientID', |
|
dbcbffb889da
test_findscu_encoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
89
diff
changeset
|
3122 '-k', 'SpecificCharacterSet', |
|
dbcbffb889da
test_findscu_encoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
89
diff
changeset
|
3123 '-k', 'PatientName' ]) |
|
dbcbffb889da
test_findscu_encoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
89
diff
changeset
|
3124 i = i.decode(ENCODINGS[master][1]) |
|
dbcbffb889da
test_findscu_encoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
89
diff
changeset
|
3125 |
|
dbcbffb889da
test_findscu_encoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
89
diff
changeset
|
3126 characterSet = re.findall('\(0008,0005\).*?\[(.*?)\]', i) |
|
dbcbffb889da
test_findscu_encoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
89
diff
changeset
|
3127 self.assertEqual(1, len(characterSet)) |
|
dbcbffb889da
test_findscu_encoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
89
diff
changeset
|
3128 self.assertEqual(ENCODINGS[master][0], characterSet[0].strip()) |
|
dbcbffb889da
test_findscu_encoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
89
diff
changeset
|
3129 |
|
dbcbffb889da
test_findscu_encoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
89
diff
changeset
|
3130 patientId = re.findall('\(0010,0020\).*?\[(.*?)\]', i) |
|
dbcbffb889da
test_findscu_encoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
89
diff
changeset
|
3131 self.assertEqual(1, len(patientId)) |
|
dbcbffb889da
test_findscu_encoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
89
diff
changeset
|
3132 self.assertEqual(ENCODINGS[name][1], patientId[0].strip()) |
|
dbcbffb889da
test_findscu_encoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
89
diff
changeset
|
3133 |
|
dbcbffb889da
test_findscu_encoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
89
diff
changeset
|
3134 patientName = re.findall('\(0010,0010\).*?\[(.*?)\]', i) |
|
dbcbffb889da
test_findscu_encoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
89
diff
changeset
|
3135 self.assertEqual(1, len(patientName)) |
|
dbcbffb889da
test_findscu_encoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
89
diff
changeset
|
3136 |
|
dbcbffb889da
test_findscu_encoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
89
diff
changeset
|
3137 tmp = ENCODINGS[name][1] |
|
dbcbffb889da
test_findscu_encoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
89
diff
changeset
|
3138 expected = TEST.encode(tmp, 'ignore').decode(tmp) |
|
dbcbffb889da
test_findscu_encoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
89
diff
changeset
|
3139 tmp = ENCODINGS[master][1] |
|
dbcbffb889da
test_findscu_encoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
89
diff
changeset
|
3140 expected = expected.encode(tmp, 'ignore').decode(tmp) |
|
dbcbffb889da
test_findscu_encoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
89
diff
changeset
|
3141 |
|
dbcbffb889da
test_findscu_encoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
89
diff
changeset
|
3142 self.assertEqual(expected, patientName[0].strip()) |
|
dbcbffb889da
test_findscu_encoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
89
diff
changeset
|
3143 |
|
dbcbffb889da
test_findscu_encoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
89
diff
changeset
|
3144 |
|
dbcbffb889da
test_findscu_encoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
89
diff
changeset
|
3145 a = DoPost(_REMOTE, '/tools/find', { 'Expand' : True, |
|
dbcbffb889da
test_findscu_encoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
89
diff
changeset
|
3146 'Level' : 'Study', |
|
dbcbffb889da
test_findscu_encoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
89
diff
changeset
|
3147 'Query' : { }}) |
|
dbcbffb889da
test_findscu_encoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
89
diff
changeset
|
3148 self.assertEqual(1, len(a)) |
|
dbcbffb889da
test_findscu_encoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
89
diff
changeset
|
3149 |
|
dbcbffb889da
test_findscu_encoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
89
diff
changeset
|
3150 tmp = ENCODINGS[name][1] |
|
dbcbffb889da
test_findscu_encoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
89
diff
changeset
|
3151 self.assertEqual(TEST.encode(tmp, 'ignore').decode(tmp), a[0]["PatientMainDicomTags"]["PatientName"]) |
|
96
272d1229cb49
test reconstruction of tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
95
diff
changeset
|
3152 |
|
272d1229cb49
test reconstruction of tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
95
diff
changeset
|
3153 |
|
272d1229cb49
test reconstruction of tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
95
diff
changeset
|
3154 def test_reconstruct(self): |
|
272d1229cb49
test reconstruction of tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
95
diff
changeset
|
3155 def CompareMainDicomTag(expected, instance, level, tag): |
|
272d1229cb49
test reconstruction of tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
95
diff
changeset
|
3156 self.assertEqual(expected, DoGet(_REMOTE, '/instances/%s/%s' % (instance, level))['MainDicomTags'][tag].strip()) |
|
272d1229cb49
test reconstruction of tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
95
diff
changeset
|
3157 |
|
272d1229cb49
test reconstruction of tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
95
diff
changeset
|
3158 a = UploadInstance(_REMOTE, 'DummyCT.dcm')['ID'] |
|
272d1229cb49
test reconstruction of tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
95
diff
changeset
|
3159 |
|
272d1229cb49
test reconstruction of tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
95
diff
changeset
|
3160 studies = DoGet(_REMOTE, '/studies/') |
|
272d1229cb49
test reconstruction of tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
95
diff
changeset
|
3161 self.assertEqual(1, len(DoGet(_REMOTE, '/patients/'))) |
|
272d1229cb49
test reconstruction of tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
95
diff
changeset
|
3162 self.assertEqual(1, len(studies)) |
|
272d1229cb49
test reconstruction of tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
95
diff
changeset
|
3163 self.assertEqual(1, len(DoGet(_REMOTE, '/series/'))) |
|
272d1229cb49
test reconstruction of tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
95
diff
changeset
|
3164 self.assertEqual(1, len(DoGet(_REMOTE, '/instances/'))) |
|
272d1229cb49
test reconstruction of tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
95
diff
changeset
|
3165 |
|
272d1229cb49
test reconstruction of tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
95
diff
changeset
|
3166 modified = DoPost(_REMOTE, '/studies/%s/modify' % studies[0], { |
|
272d1229cb49
test reconstruction of tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
95
diff
changeset
|
3167 "Replace" : { |
|
272d1229cb49
test reconstruction of tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
95
diff
changeset
|
3168 "StudyDescription" : "hello", |
|
272d1229cb49
test reconstruction of tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
95
diff
changeset
|
3169 "SeriesDescription" : "world", |
|
272d1229cb49
test reconstruction of tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
95
diff
changeset
|
3170 "SOPClassUID" : "test", |
|
272d1229cb49
test reconstruction of tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
95
diff
changeset
|
3171 "SOPInstanceUID" : "myid", |
|
272d1229cb49
test reconstruction of tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
95
diff
changeset
|
3172 }, |
| 119 | 3173 "Keep" : [ "StudyInstanceUID", "SeriesInstanceUID" ], |
| 3174 "Force" : True | |
|
96
272d1229cb49
test reconstruction of tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
95
diff
changeset
|
3175 }) |
|
272d1229cb49
test reconstruction of tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
95
diff
changeset
|
3176 |
|
272d1229cb49
test reconstruction of tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
95
diff
changeset
|
3177 instances = DoGet(_REMOTE, '/instances/') |
|
272d1229cb49
test reconstruction of tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
95
diff
changeset
|
3178 self.assertEqual(1, len(DoGet(_REMOTE, '/patients/'))) |
|
272d1229cb49
test reconstruction of tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
95
diff
changeset
|
3179 self.assertEqual(1, len(DoGet(_REMOTE, '/studies/'))) |
|
272d1229cb49
test reconstruction of tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
95
diff
changeset
|
3180 self.assertEqual(1, len(DoGet(_REMOTE, '/series/'))) |
|
272d1229cb49
test reconstruction of tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
95
diff
changeset
|
3181 self.assertEqual(2, len(instances)) |
|
272d1229cb49
test reconstruction of tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
95
diff
changeset
|
3182 |
|
272d1229cb49
test reconstruction of tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
95
diff
changeset
|
3183 b = instances[0] if instances[1] == a else instances[1] |
|
272d1229cb49
test reconstruction of tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
95
diff
changeset
|
3184 |
|
272d1229cb49
test reconstruction of tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
95
diff
changeset
|
3185 CompareMainDicomTag('Knee (R)', a, 'study', 'StudyDescription') |
|
272d1229cb49
test reconstruction of tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
95
diff
changeset
|
3186 CompareMainDicomTag('AX. FSE PD', a, 'series', 'SeriesDescription') |
|
272d1229cb49
test reconstruction of tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
95
diff
changeset
|
3187 CompareMainDicomTag('1.2.840.113619.2.176.2025.1499492.7040.1171286242.109', a, '', 'SOPInstanceUID') |
|
272d1229cb49
test reconstruction of tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
95
diff
changeset
|
3188 CompareMainDicomTag('myid', b, '', 'SOPInstanceUID') |
|
272d1229cb49
test reconstruction of tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
95
diff
changeset
|
3189 self.assertEqual('1.2.840.10008.5.1.4.1.1.4', DoGet(_REMOTE, '/instances/%s/metadata/SopClassUid' % a).strip()) |
|
272d1229cb49
test reconstruction of tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
95
diff
changeset
|
3190 self.assertEqual('test', DoGet(_REMOTE, '/instances/%s/metadata/SopClassUid' % b).strip()) |
|
272d1229cb49
test reconstruction of tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
95
diff
changeset
|
3191 |
|
272d1229cb49
test reconstruction of tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
95
diff
changeset
|
3192 DoPost(_REMOTE, '/instances/%s/reconstruct' % b, {}) |
|
272d1229cb49
test reconstruction of tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
95
diff
changeset
|
3193 |
|
272d1229cb49
test reconstruction of tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
95
diff
changeset
|
3194 CompareMainDicomTag('hello', a, 'study', 'StudyDescription') |
|
272d1229cb49
test reconstruction of tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
95
diff
changeset
|
3195 CompareMainDicomTag('world', a, 'series', 'SeriesDescription') |
|
272d1229cb49
test reconstruction of tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
95
diff
changeset
|
3196 CompareMainDicomTag('1.2.840.113619.2.176.2025.1499492.7040.1171286242.109', a, '', 'SOPInstanceUID') |
| 102 | 3197 |
| 104 | 3198 def test_httpClient_lua(self): |
| 3199 with open(GetDatabasePath('Lua/HttpClient.lua'), 'r') as f: | |
| 102 | 3200 result = DoPost(_REMOTE, '/tools/execute-script', f.read(), 'application/lua') |
| 3201 | |
| 3202 self.assertIn('OK', result) | |
|
107
fddb35f7289d
test_bitbucket_issue_44
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
104
diff
changeset
|
3203 |
|
fddb35f7289d
test_bitbucket_issue_44
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
104
diff
changeset
|
3204 |
|
fddb35f7289d
test_bitbucket_issue_44
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
104
diff
changeset
|
3205 def test_bitbucket_issue_44(self): |
|
fddb35f7289d
test_bitbucket_issue_44
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
104
diff
changeset
|
3206 # https://bitbucket.org/sjodogne/orthanc/issues/44/bad-interpretation-of-photometric |
|
fddb35f7289d
test_bitbucket_issue_44
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
104
diff
changeset
|
3207 UploadInstance(_REMOTE, 'Issue44/Monochrome1.dcm') |
|
fddb35f7289d
test_bitbucket_issue_44
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
104
diff
changeset
|
3208 UploadInstance(_REMOTE, 'Issue44/Monochrome2.dcm') |
|
fddb35f7289d
test_bitbucket_issue_44
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
104
diff
changeset
|
3209 |
|
fddb35f7289d
test_bitbucket_issue_44
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
104
diff
changeset
|
3210 # dcmcjpeg +ua +eb Monochrome1.dcm Monochrome1-Jpeg.dcm |
|
fddb35f7289d
test_bitbucket_issue_44
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
104
diff
changeset
|
3211 UploadInstance(_REMOTE, 'Issue44/Monochrome1-Jpeg.dcm') |
|
fddb35f7289d
test_bitbucket_issue_44
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
104
diff
changeset
|
3212 |
|
fddb35f7289d
test_bitbucket_issue_44
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
104
diff
changeset
|
3213 # dcmcjpeg +ua Monochrome1.dcm Monochrome1-JpegLS.dcm |
|
fddb35f7289d
test_bitbucket_issue_44
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
104
diff
changeset
|
3214 UploadInstance(_REMOTE, 'Issue44/Monochrome1-JpegLS.dcm') |
|
fddb35f7289d
test_bitbucket_issue_44
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
104
diff
changeset
|
3215 |
|
fddb35f7289d
test_bitbucket_issue_44
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
104
diff
changeset
|
3216 monochrome1 = 'bcdd600a-a6a9c522-5f0a6e84-8657c9f3-b76e59b7' |
|
fddb35f7289d
test_bitbucket_issue_44
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
104
diff
changeset
|
3217 monochrome1_jpeg = '9df82121-208a2da8-0038674a-3d7a773b-b7008cd2' |
|
fddb35f7289d
test_bitbucket_issue_44
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
104
diff
changeset
|
3218 monochrome1_jpegls = '0486d1a2-9165573f-b1976b20-e927b016-6b8d67ab' |
|
fddb35f7289d
test_bitbucket_issue_44
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
104
diff
changeset
|
3219 monochrome2 = 'f00947b7-f61f7164-c93414d1-c6fbda6a-9e92ed20' |
|
fddb35f7289d
test_bitbucket_issue_44
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
104
diff
changeset
|
3220 |
|
fddb35f7289d
test_bitbucket_issue_44
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
104
diff
changeset
|
3221 for i in [ monochrome1, monochrome1_jpeg, monochrome1_jpegls ]: |
|
fddb35f7289d
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parents:
104
diff
changeset
|
3222 im = GetImage(_REMOTE, '/instances/%s/preview' % i) |
|
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parents:
104
diff
changeset
|
3223 self.assertEqual("L", im.mode) |
|
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parents:
104
diff
changeset
|
3224 self.assertEqual(2010, im.size[0]) |
|
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test_bitbucket_issue_44
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
104
diff
changeset
|
3225 self.assertEqual(2446, im.size[1]) |
|
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test_bitbucket_issue_44
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
104
diff
changeset
|
3226 |
|
fddb35f7289d
test_bitbucket_issue_44
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
104
diff
changeset
|
3227 # This is the chest image, with MONOCHROME1. Raw background is |
|
fddb35f7289d
test_bitbucket_issue_44
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
104
diff
changeset
|
3228 # white (255), should be rendered as black (0) => invert |
|
fddb35f7289d
test_bitbucket_issue_44
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
104
diff
changeset
|
3229 if i == monochrome1_jpeg: |
|
fddb35f7289d
test_bitbucket_issue_44
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
104
diff
changeset
|
3230 # Add some tolerance because of JPEG destructive compression |
|
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test_bitbucket_issue_44
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
104
diff
changeset
|
3231 self.assertGreater(10, im.getpixel((0,0))) |
|
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test_bitbucket_issue_44
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
104
diff
changeset
|
3232 else: |
|
fddb35f7289d
test_bitbucket_issue_44
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
104
diff
changeset
|
3233 self.assertEqual(0, im.getpixel((0,0))) |
|
fddb35f7289d
test_bitbucket_issue_44
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
104
diff
changeset
|
3234 |
|
fddb35f7289d
test_bitbucket_issue_44
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
104
diff
changeset
|
3235 im = GetImage(_REMOTE, '/instances/%s/preview' % monochrome2) |
|
fddb35f7289d
test_bitbucket_issue_44
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
104
diff
changeset
|
3236 self.assertEqual("L", im.mode) |
|
fddb35f7289d
test_bitbucket_issue_44
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
104
diff
changeset
|
3237 self.assertEqual(1572, im.size[0]) |
|
fddb35f7289d
test_bitbucket_issue_44
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
104
diff
changeset
|
3238 self.assertEqual(2010, im.size[1]) |
|
fddb35f7289d
test_bitbucket_issue_44
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
104
diff
changeset
|
3239 |
|
fddb35f7289d
test_bitbucket_issue_44
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
104
diff
changeset
|
3240 # This is the key image, with MONOCHROME2. Raw background is |
|
fddb35f7289d
test_bitbucket_issue_44
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
104
diff
changeset
|
3241 # white (255), should be rendered as white (255) |
|
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test_bitbucket_issue_44
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
104
diff
changeset
|
3242 self.assertEqual(255, im.getpixel((0,0))) |
|
111
7005cdeeb704
test_bitbucket_issue_42
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
107
diff
changeset
|
3243 |
|
7005cdeeb704
test_bitbucket_issue_42
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
107
diff
changeset
|
3244 |
|
7005cdeeb704
test_bitbucket_issue_42
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
107
diff
changeset
|
3245 def test_bitbucket_issue_42(self): |
|
7005cdeeb704
test_bitbucket_issue_42
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
107
diff
changeset
|
3246 # https://bitbucket.org/sjodogne/orthanc/issues/42/fails-to-modify-a-dicom-video-file |
| 123 | 3247 # This test fails on DCMTK 3.6.0, but succeeds in DCMTK 3.6.1 snapshots and DCMTK 3.6.2 |
|
111
7005cdeeb704
test_bitbucket_issue_42
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
107
diff
changeset
|
3248 UploadInstance(_REMOTE, 'Issue42.dcm')['ID'] |
|
7005cdeeb704
test_bitbucket_issue_42
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
107
diff
changeset
|
3249 modified = DoPost(_REMOTE, |
|
7005cdeeb704
test_bitbucket_issue_42
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
107
diff
changeset
|
3250 '/patients/da128605-e040d0c4-310615d2-3475da63-df2d1ef4/modify', |
| 119 | 3251 '{"Replace":{"PatientID":"Hello","PatientName":"Sample patient name"},"Force":true}', |
|
111
7005cdeeb704
test_bitbucket_issue_42
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
107
diff
changeset
|
3252 'application/json') |
|
7005cdeeb704
test_bitbucket_issue_42
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
107
diff
changeset
|
3253 self.assertTrue('PatientID' in modified) |
|
113
3e5934363e76
test_rest_find_limitµ
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
112
diff
changeset
|
3254 |
|
3e5934363e76
test_rest_find_limitµ
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
112
diff
changeset
|
3255 |
|
3e5934363e76
test_rest_find_limitµ
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
112
diff
changeset
|
3256 def test_rest_find_limit(self): |
|
3e5934363e76
test_rest_find_limitµ
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
112
diff
changeset
|
3257 # Check the "Since" and "Limit" parameters in URI "/tools/find" |
|
3e5934363e76
test_rest_find_limitµ
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
112
diff
changeset
|
3258 # Related to issue 53: https://bitbucket.org/sjodogne/orthanc/issues/53 |
|
111
7005cdeeb704
test_bitbucket_issue_42
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
107
diff
changeset
|
3259 |
|
113
3e5934363e76
test_rest_find_limitµ
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parents:
112
diff
changeset
|
3260 # Upload 6 instances |
|
3e5934363e76
test_rest_find_limitµ
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
112
diff
changeset
|
3261 brainix = [] |
|
3e5934363e76
test_rest_find_limitµ
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
112
diff
changeset
|
3262 knee = [] |
|
3e5934363e76
test_rest_find_limitµ
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
112
diff
changeset
|
3263 for i in range(2): |
|
3e5934363e76
test_rest_find_limitµ
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
112
diff
changeset
|
3264 brainix.append(UploadInstance(_REMOTE, 'Brainix/Flair/IM-0001-000%d.dcm' % (i + 1)) ['ID']) |
|
3e5934363e76
test_rest_find_limitµ
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
112
diff
changeset
|
3265 brainix.append(UploadInstance(_REMOTE, 'Brainix/Epi/IM-0001-000%d.dcm' % (i + 1)) ['ID']) |
|
3e5934363e76
test_rest_find_limitµ
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
112
diff
changeset
|
3266 knee.append(UploadInstance(_REMOTE, 'Knee/T1/IM-0001-000%d.dcm' % (i + 1)) ['ID']) |
|
3e5934363e76
test_rest_find_limitµ
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
112
diff
changeset
|
3267 |
|
3e5934363e76
test_rest_find_limitµ
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
112
diff
changeset
|
3268 # Check using BRAINIX |
|
3e5934363e76
test_rest_find_limitµ
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
112
diff
changeset
|
3269 a = DoPost(_REMOTE, '/tools/find', { 'Level' : 'Instance', |
|
3e5934363e76
test_rest_find_limitµ
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
112
diff
changeset
|
3270 'Query' : { 'PatientName' : 'B*' }, |
|
3e5934363e76
test_rest_find_limitµ
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
112
diff
changeset
|
3271 'Limit' : 10 }) |
|
3e5934363e76
test_rest_find_limitµ
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
112
diff
changeset
|
3272 self.assertEqual(4, len(a)) |
|
3e5934363e76
test_rest_find_limitµ
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
112
diff
changeset
|
3273 |
|
3e5934363e76
test_rest_find_limitµ
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
112
diff
changeset
|
3274 a = DoPost(_REMOTE, '/tools/find', { 'Level' : 'Instance', |
|
3e5934363e76
test_rest_find_limitµ
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
112
diff
changeset
|
3275 'Query' : { 'PatientName' : 'B*' }, |
|
3e5934363e76
test_rest_find_limitµ
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
112
diff
changeset
|
3276 'Limit' : 4 }) |
|
3e5934363e76
test_rest_find_limitµ
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
112
diff
changeset
|
3277 self.assertEqual(4, len(a)) |
|
3e5934363e76
test_rest_find_limitµ
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
112
diff
changeset
|
3278 |
|
3e5934363e76
test_rest_find_limitµ
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
112
diff
changeset
|
3279 a = DoPost(_REMOTE, '/tools/find', { 'Level' : 'Instance', |
|
3e5934363e76
test_rest_find_limitµ
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
112
diff
changeset
|
3280 'Query' : { 'PatientName' : 'B*' }, |
|
3e5934363e76
test_rest_find_limitµ
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
112
diff
changeset
|
3281 'Since' : 2, |
|
3e5934363e76
test_rest_find_limitµ
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
112
diff
changeset
|
3282 'Limit' : 4 }) |
|
3e5934363e76
test_rest_find_limitµ
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
112
diff
changeset
|
3283 self.assertEqual(2, len(a)) |
|
3e5934363e76
test_rest_find_limitµ
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
112
diff
changeset
|
3284 |
|
3e5934363e76
test_rest_find_limitµ
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
112
diff
changeset
|
3285 a = DoPost(_REMOTE, '/tools/find', { 'Level' : 'Instance', |
|
3e5934363e76
test_rest_find_limitµ
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
112
diff
changeset
|
3286 'Query' : { 'PatientName' : 'B*' }, |
|
3e5934363e76
test_rest_find_limitµ
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
112
diff
changeset
|
3287 'Limit' : 3 }) |
|
3e5934363e76
test_rest_find_limitµ
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
112
diff
changeset
|
3288 self.assertEqual(3, len(a)) |
|
3e5934363e76
test_rest_find_limitµ
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
112
diff
changeset
|
3289 |
|
3e5934363e76
test_rest_find_limitµ
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
112
diff
changeset
|
3290 b = [] |
|
3e5934363e76
test_rest_find_limitµ
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
112
diff
changeset
|
3291 for i in range(4): |
|
3e5934363e76
test_rest_find_limitµ
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
112
diff
changeset
|
3292 a = DoPost(_REMOTE, '/tools/find', { 'Level' : 'Instance', |
|
3e5934363e76
test_rest_find_limitµ
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
112
diff
changeset
|
3293 'Query' : { 'PatientName' : 'B*' }, |
|
3e5934363e76
test_rest_find_limitµ
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
112
diff
changeset
|
3294 'Limit' : 1, |
|
3e5934363e76
test_rest_find_limitµ
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
112
diff
changeset
|
3295 'Since' : i }) |
|
3e5934363e76
test_rest_find_limitµ
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
112
diff
changeset
|
3296 self.assertEqual(1, len(a)) |
|
3e5934363e76
test_rest_find_limitµ
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
112
diff
changeset
|
3297 b.append(a[0]) |
|
3e5934363e76
test_rest_find_limitµ
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
112
diff
changeset
|
3298 |
|
3e5934363e76
test_rest_find_limitµ
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
112
diff
changeset
|
3299 # Check whether the two sets are equal through symmetric difference |
|
3e5934363e76
test_rest_find_limitµ
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
112
diff
changeset
|
3300 self.assertEqual(0, len(set(b) ^ set(brainix))) |
|
3e5934363e76
test_rest_find_limitµ
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
112
diff
changeset
|
3301 |
|
3e5934363e76
test_rest_find_limitµ
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
112
diff
changeset
|
3302 # Check using KNEE |
|
3e5934363e76
test_rest_find_limitµ
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
112
diff
changeset
|
3303 a = DoPost(_REMOTE, '/tools/find', { 'Level' : 'Instance', |
|
3e5934363e76
test_rest_find_limitµ
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
112
diff
changeset
|
3304 'Query' : { 'PatientName' : 'K*' }, |
|
3e5934363e76
test_rest_find_limitµ
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
112
diff
changeset
|
3305 'Limit' : 10 }) |
|
3e5934363e76
test_rest_find_limitµ
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
112
diff
changeset
|
3306 self.assertEqual(2, len(a)) |
|
3e5934363e76
test_rest_find_limitµ
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
112
diff
changeset
|
3307 |
|
3e5934363e76
test_rest_find_limitµ
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
112
diff
changeset
|
3308 a = DoPost(_REMOTE, '/tools/find', { 'Level' : 'Instance', |
|
3e5934363e76
test_rest_find_limitµ
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parents:
112
diff
changeset
|
3309 'Query' : { 'PatientName' : 'K*' }, |
|
3e5934363e76
test_rest_find_limitµ
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parents:
112
diff
changeset
|
3310 'Limit' : 2 }) |
|
3e5934363e76
test_rest_find_limitµ
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parents:
112
diff
changeset
|
3311 self.assertEqual(2, len(a)) |
|
3e5934363e76
test_rest_find_limitµ
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
112
diff
changeset
|
3312 |
|
3e5934363e76
test_rest_find_limitµ
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
112
diff
changeset
|
3313 b = [] |
|
3e5934363e76
test_rest_find_limitµ
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
112
diff
changeset
|
3314 for i in range(2): |
|
3e5934363e76
test_rest_find_limitµ
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
112
diff
changeset
|
3315 a = DoPost(_REMOTE, '/tools/find', { 'Level' : 'Instance', |
|
3e5934363e76
test_rest_find_limitµ
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
112
diff
changeset
|
3316 'Query' : { 'PatientName' : 'K*' }, |
|
3e5934363e76
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parents:
112
diff
changeset
|
3317 'Limit' : 1, |
|
3e5934363e76
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parents:
112
diff
changeset
|
3318 'Since' : i }) |
|
3e5934363e76
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Sebastien Jodogne <s.jodogne@gmail.com>
parents:
112
diff
changeset
|
3319 self.assertEqual(1, len(a)) |
|
3e5934363e76
test_rest_find_limitµ
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
112
diff
changeset
|
3320 b.append(a[0]) |
|
3e5934363e76
test_rest_find_limitµ
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
112
diff
changeset
|
3321 |
|
3e5934363e76
test_rest_find_limitµ
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
112
diff
changeset
|
3322 self.assertEqual(0, len(set(b) ^ set(knee))) |
|
115
45ebfab035b7
test_bitbucket_issue_46
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
113
diff
changeset
|
3323 |
|
45ebfab035b7
test_bitbucket_issue_46
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
113
diff
changeset
|
3324 |
|
45ebfab035b7
test_bitbucket_issue_46
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
113
diff
changeset
|
3325 def test_bitbucket_issue_46(self): |
|
45ebfab035b7
test_bitbucket_issue_46
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parents:
113
diff
changeset
|
3326 # "PHI remaining after anonymization" |
|
45ebfab035b7
test_bitbucket_issue_46
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
113
diff
changeset
|
3327 # https://bitbucket.org/sjodogne/orthanc/issues/46 |
|
45ebfab035b7
test_bitbucket_issue_46
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
113
diff
changeset
|
3328 |
|
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|
3329 def GetAnonymizedTags(study, version): |
|
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|
3330 anonymized = DoPost(_REMOTE, '/studies/%s/anonymize' % study, |
|
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diff
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|
3331 { 'DicomVersion' : version }, |
|
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|
3332 'application/json') ['ID'] |
|
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diff
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|
3333 a = DoGet(_REMOTE, '/studies/%s/instances' % anonymized) |
|
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diff
changeset
|
3334 self.assertEqual(1, len(a)) |
|
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parents:
113
diff
changeset
|
3335 |
|
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diff
changeset
|
3336 instance = a[0]['ID'] |
|
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test_bitbucket_issue_46
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diff
changeset
|
3337 |
|
45ebfab035b7
test_bitbucket_issue_46
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parents:
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diff
changeset
|
3338 return (instance, DoGet(_REMOTE, '/instances/%s/tags' % instance)) |
|
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test_bitbucket_issue_46
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diff
changeset
|
3339 |
|
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parents:
113
diff
changeset
|
3340 UploadInstance(_REMOTE, 'Issue44/Monochrome1.dcm') |
|
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parents:
113
diff
changeset
|
3341 origStudy = '6068a14b-d4df27af-9ec22145-538772d8-74f228ff' |
|
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test_bitbucket_issue_46
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parents:
113
diff
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|
3342 |
|
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diff
changeset
|
3343 # Add the 0032,1033 (Requesting Service) and the 0010,1060 |
|
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diff
changeset
|
3344 # (Patient's Mother's Birth Name) tags |
|
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diff
changeset
|
3345 newStudy = DoPost(_REMOTE, '/studies/%s/modify' % origStudy, |
|
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diff
changeset
|
3346 '{"Replace":{"0010,1060":"OSIMIS","0032,1033":"MOTHER"}}', |
|
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test_bitbucket_issue_46
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diff
changeset
|
3347 'application/json')['ID'] |
|
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test_bitbucket_issue_46
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parents:
113
diff
changeset
|
3348 |
|
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test_bitbucket_issue_46
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parents:
113
diff
changeset
|
3349 # Use Table E.1-1 from PS 3.15-2008 |
|
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test_bitbucket_issue_46
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parents:
113
diff
changeset
|
3350 # https://raw.githubusercontent.com/jodogne/dicom-specification/master/2008/08_15pu.pdf |
|
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test_bitbucket_issue_46
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parents:
113
diff
changeset
|
3351 (instance, tags) = GetAnonymizedTags(newStudy, "2008") |
|
45ebfab035b7
test_bitbucket_issue_46
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parents:
113
diff
changeset
|
3352 self.assertTrue('0032,1033' in tags) |
|
45ebfab035b7
test_bitbucket_issue_46
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parents:
113
diff
changeset
|
3353 self.assertTrue('0010,1060' in tags) |
|
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test_bitbucket_issue_46
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parents:
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diff
changeset
|
3354 |
|
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test_bitbucket_issue_46
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parents:
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diff
changeset
|
3355 # Use Table E.1-1 from PS 3.15-2011 (only if Orthanc >= 1.2.1) |
|
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test_bitbucket_issue_46
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diff
changeset
|
3356 # https://raw.githubusercontent.com/jodogne/dicom-specification/master/2008/08_15pu.pdf |
|
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test_bitbucket_issue_46
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parents:
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diff
changeset
|
3357 (instance, tags) = GetAnonymizedTags(newStudy, "2017c") |
|
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test_bitbucket_issue_46
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parents:
113
diff
changeset
|
3358 self.assertFalse('0032,1033' in tags) |
|
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test_bitbucket_issue_46
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parents:
113
diff
changeset
|
3359 self.assertFalse('0010,1060' in tags) |
|
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test_bitbucket_issue_46
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parents:
113
diff
changeset
|
3360 |
|
45ebfab035b7
test_bitbucket_issue_46
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parents:
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diff
changeset
|
3361 t = {} |
|
45ebfab035b7
test_bitbucket_issue_46
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diff
changeset
|
3362 for (key, value) in tags.iteritems(): |
|
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diff
changeset
|
3363 t[value['Name']] = value['Value'] |
|
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test_bitbucket_issue_46
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diff
changeset
|
3364 |
|
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test_bitbucket_issue_46
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diff
changeset
|
3365 self.assertEqual('', t['StudyDate']) # Type 1 tag => cleared |
|
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diff
changeset
|
3366 self.assertEqual('', t['StudyTime']) # Type 1 tag => cleared |
|
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diff
changeset
|
3367 self.assertEqual('', t['PatientSex']) # Type 1 tag => cleared |
|
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diff
changeset
|
3368 self.assertFalse('SeriesDate' in t) # Type 3 tag => null |
|
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test_bitbucket_issue_46
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diff
changeset
|
3369 self.assertFalse('SeriesTime' in t) # Type 3 tag => null |
|
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test_bitbucket_issue_46
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parents:
113
diff
changeset
|
3370 |
|
45ebfab035b7
test_bitbucket_issue_46
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parents:
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diff
changeset
|
3371 with tempfile.NamedTemporaryFile(delete = True) as f: |
|
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test_bitbucket_issue_46
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diff
changeset
|
3372 # Run "dciodvfy" on the anonymized file to be sure it is still valid |
|
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diff
changeset
|
3373 f.write(DoGet(_REMOTE, '/instances/%s/file' % instance)) |
|
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test_bitbucket_issue_46
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diff
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|
3374 f.flush() |
|
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test_bitbucket_issue_46
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diff
changeset
|
3375 subprocess.check_output([ FindExecutable('dciodvfy'), f.name ], |
|
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test_bitbucket_issue_46
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113
diff
changeset
|
3376 stderr = subprocess.STDOUT).split('\n') |
|
118
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test_bitbucket_issue_55
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117
diff
changeset
|
3377 |
|
a954c535fef6
test_bitbucket_issue_55
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117
diff
changeset
|
3378 |
|
a954c535fef6
test_bitbucket_issue_55
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parents:
117
diff
changeset
|
3379 def test_bitbucket_issue_55(self): |
|
a954c535fef6
test_bitbucket_issue_55
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parents:
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diff
changeset
|
3380 def Run(modify, query): |
|
a954c535fef6
test_bitbucket_issue_55
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parents:
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diff
changeset
|
3381 self.assertEqual(1, len(DoGet(_REMOTE, '/instances'))) |
|
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test_bitbucket_issue_55
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117
diff
changeset
|
3382 |
|
a954c535fef6
test_bitbucket_issue_55
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117
diff
changeset
|
3383 operation = 'modify' if modify else 'anonymize' |
|
a954c535fef6
test_bitbucket_issue_55
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117
diff
changeset
|
3384 |
|
a954c535fef6
test_bitbucket_issue_55
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parents:
117
diff
changeset
|
3385 self.assertRaises(Exception, lambda: DoPost( |
|
a954c535fef6
test_bitbucket_issue_55
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parents:
117
diff
changeset
|
3386 _REMOTE, '/studies/%s/%s' % (study, operation), query)) |
|
a954c535fef6
test_bitbucket_issue_55
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parents:
117
diff
changeset
|
3387 self.assertEqual(1, len(DoGet(_REMOTE, '/instances'))) |
|
a954c535fef6
test_bitbucket_issue_55
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
117
diff
changeset
|
3388 |
|
a954c535fef6
test_bitbucket_issue_55
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parents:
117
diff
changeset
|
3389 query["Force"] = True |
|
a954c535fef6
test_bitbucket_issue_55
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parents:
117
diff
changeset
|
3390 a = DoPost(_REMOTE, '/studies/%s/%s' % (study, operation), query)['Path'] |
|
a954c535fef6
test_bitbucket_issue_55
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parents:
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diff
changeset
|
3391 self.assertEqual(2, len(DoGet(_REMOTE, '/instances'))) |
|
a954c535fef6
test_bitbucket_issue_55
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parents:
117
diff
changeset
|
3392 DoDelete(_REMOTE, a) |
|
a954c535fef6
test_bitbucket_issue_55
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parents:
117
diff
changeset
|
3393 |
|
a954c535fef6
test_bitbucket_issue_55
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parents:
117
diff
changeset
|
3394 self.assertEqual(1, len(DoGet(_REMOTE, '/instances'))) |
|
a954c535fef6
test_bitbucket_issue_55
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
117
diff
changeset
|
3395 |
|
a954c535fef6
test_bitbucket_issue_55
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
117
diff
changeset
|
3396 UploadInstance(_REMOTE, 'DummyCT.dcm') |
|
a954c535fef6
test_bitbucket_issue_55
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parents:
117
diff
changeset
|
3397 study = 'b9c08539-26f93bde-c81ab0d7-bffaf2cb-a4d0bdd0' |
|
a954c535fef6
test_bitbucket_issue_55
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
117
diff
changeset
|
3398 |
|
a954c535fef6
test_bitbucket_issue_55
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parents:
117
diff
changeset
|
3399 Run(True, { "Replace" : { "StudyInstanceUID" : "world" } }) |
|
a954c535fef6
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parents:
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diff
changeset
|
3400 Run(True, { "Replace" : { "SeriesInstanceUID" : "world" } }) |
|
a954c535fef6
test_bitbucket_issue_55
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117
diff
changeset
|
3401 Run(True, { "Replace" : { "SOPInstanceUID" : "world" } }) |
|
a954c535fef6
test_bitbucket_issue_55
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diff
changeset
|
3402 |
|
a954c535fef6
test_bitbucket_issue_55
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117
diff
changeset
|
3403 Run(False, { "Keep" : [ "StudyInstanceUID" ]}) |
|
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test_bitbucket_issue_55
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diff
changeset
|
3404 Run(False, { "Keep" : [ "SeriesInstanceUID" ]}) |
|
a954c535fef6
test_bitbucket_issue_55
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parents:
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diff
changeset
|
3405 Run(False, { "Keep" : [ "SOPInstanceUID" ]}) |
|
a954c535fef6
test_bitbucket_issue_55
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117
diff
changeset
|
3406 |
|
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test_bitbucket_issue_55
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parents:
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diff
changeset
|
3407 Run(False, { "Replace" : { "StudyInstanceUID" : "world" } }) |
|
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diff
changeset
|
3408 Run(False, { "Replace" : { "SeriesInstanceUID" : "world" } }) |
|
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test_bitbucket_issue_55
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parents:
117
diff
changeset
|
3409 Run(False, { "Replace" : { "SOPInstanceUID" : "world" } }) |
|
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diff
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|
3410 |
|
120
fce08afe6b2d
test_bitbucket_issue_56
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
119
diff
changeset
|
3411 |
|
fce08afe6b2d
test_bitbucket_issue_56
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119
diff
changeset
|
3412 def test_bitbucket_issue_56(self): |
|
fce08afe6b2d
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diff
changeset
|
3413 # Case-insensitive matching over accents. This test assumes |
|
fce08afe6b2d
test_bitbucket_issue_56
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119
diff
changeset
|
3414 # that the "CaseSensitivePN" configuration option of Orthanc |
|
fce08afe6b2d
test_bitbucket_issue_56
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diff
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|
3415 # is set to "false" (default value). |
|
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test_bitbucket_issue_56
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diff
changeset
|
3416 # https://bitbucket.org/sjodogne/orthanc/issues/56 |
|
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test_bitbucket_issue_56
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diff
changeset
|
3417 |
|
fce08afe6b2d
test_bitbucket_issue_56
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diff
changeset
|
3418 def Check(name, expected, expectedSensitive): |
|
fce08afe6b2d
test_bitbucket_issue_56
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parents:
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diff
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|
3419 a = CallFindScu([ '-k', '0008,0005=ISO_IR 192', # Use UTF-8 |
|
fce08afe6b2d
test_bitbucket_issue_56
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diff
changeset
|
3420 '-k', '0008,0052=PATIENT', |
|
fce08afe6b2d
test_bitbucket_issue_56
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diff
changeset
|
3421 '-k', 'PatientName=%s' % name ]) |
|
fce08afe6b2d
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diff
changeset
|
3422 patientNames = re.findall('\(0010,0010\).*?\[(.*?)\]', a) |
|
fce08afe6b2d
test_bitbucket_issue_56
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diff
changeset
|
3423 self.assertEqual(expected, len(patientNames)) |
|
fce08afe6b2d
test_bitbucket_issue_56
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diff
changeset
|
3424 |
|
fce08afe6b2d
test_bitbucket_issue_56
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parents:
119
diff
changeset
|
3425 a = DoPost(_REMOTE, '/tools/find', { 'Level' : 'Patient', |
|
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diff
changeset
|
3426 'CaseSensitive' : False, |
|
fce08afe6b2d
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diff
changeset
|
3427 'Query' : { 'PatientName' : name }}) |
|
fce08afe6b2d
test_bitbucket_issue_56
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parents:
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diff
changeset
|
3428 self.assertEqual(expected, len(a)) |
|
fce08afe6b2d
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parents:
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diff
changeset
|
3429 |
|
fce08afe6b2d
test_bitbucket_issue_56
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parents:
119
diff
changeset
|
3430 a = DoPost(_REMOTE, '/tools/find', { 'Level' : 'Patient', |
|
fce08afe6b2d
test_bitbucket_issue_56
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diff
changeset
|
3431 'CaseSensitive' : True, |
|
fce08afe6b2d
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diff
changeset
|
3432 'Query' : { 'PatientName' : name }}) |
|
fce08afe6b2d
test_bitbucket_issue_56
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
119
diff
changeset
|
3433 self.assertEqual(expectedSensitive, len(a)) |
|
fce08afe6b2d
test_bitbucket_issue_56
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
119
diff
changeset
|
3434 |
|
fce08afe6b2d
test_bitbucket_issue_56
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
119
diff
changeset
|
3435 UploadInstance(_REMOTE, 'Encodings/Lena-latin1.dcm') |
|
fce08afe6b2d
test_bitbucket_issue_56
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
119
diff
changeset
|
3436 |
|
fce08afe6b2d
test_bitbucket_issue_56
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
119
diff
changeset
|
3437 # WildcardConstraint |
|
fce08afe6b2d
test_bitbucket_issue_56
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
119
diff
changeset
|
3438 Check('TeSt*', 1, 0) |
|
fce08afe6b2d
test_bitbucket_issue_56
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
119
diff
changeset
|
3439 Check('TeSt-a*', 0, 0) |
|
fce08afe6b2d
test_bitbucket_issue_56
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
119
diff
changeset
|
3440 Check('TeSt-É*', 1, 0) |
|
fce08afe6b2d
test_bitbucket_issue_56
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
119
diff
changeset
|
3441 Check('TeSt-é*', 1, 0) |
|
fce08afe6b2d
test_bitbucket_issue_56
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
119
diff
changeset
|
3442 Check('Test-é*', 1, 1) |
|
fce08afe6b2d
test_bitbucket_issue_56
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
119
diff
changeset
|
3443 |
|
fce08afe6b2d
test_bitbucket_issue_56
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
119
diff
changeset
|
3444 # ListConstraint |
|
fce08afe6b2d
test_bitbucket_issue_56
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
119
diff
changeset
|
3445 Check('Test-éüäöò\\nope', 1, 1) |
|
fce08afe6b2d
test_bitbucket_issue_56
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
119
diff
changeset
|
3446 Check('Test-ÉÜÄÖÒ\\nope', 1, 0) |
|
fce08afe6b2d
test_bitbucket_issue_56
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
119
diff
changeset
|
3447 |
|
fce08afe6b2d
test_bitbucket_issue_56
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
119
diff
changeset
|
3448 # ValueConstraint |
|
fce08afe6b2d
test_bitbucket_issue_56
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
119
diff
changeset
|
3449 Check('Test-éüäöò', 1, 1) |
|
fce08afe6b2d
test_bitbucket_issue_56
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
119
diff
changeset
|
3450 Check('Test-ÉÜÄÖÒ', 1, 0) |
|
fce08afe6b2d
test_bitbucket_issue_56
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
119
diff
changeset
|
3451 |
| 125 | 3452 |
| 3453 def test_gbk_alias(self): | |
| 3454 # https://groups.google.com/d/msg/orthanc-users/WMM8LMbjpUc/02-1f_yFCgAJ | |
| 3455 # This test fails on Orthanc <= 1.3.0 | |
| 3456 i = UploadInstance(_REMOTE, '2017-09-19-GBK-Tumashu.dcm')['ID'] | |
| 3457 tags = DoGet(_REMOTE, '/instances/%s/tags?simplify' % i) | |
| 3458 self.assertEqual(tags['PatientName'], u'徐浩凯') | |
| 3459 self.assertEqual(tags['InstitutionName'], u'灌云县疾病预防控制中心') | |
| 126 | 3460 |
| 3461 | |
| 3462 def test_long_tag(self): | |
| 3463 i = UploadInstance(_REMOTE, 'DummyCTWithLongTag.dcm')['ID'] | |
| 3464 series = 'f2635388-f01d497a-15f7c06b-ad7dba06-c4c599fe' | |
| 3465 | |
| 3466 tags = DoGet(_REMOTE, '/instances/%s/tags' % i) | |
| 3467 self.assertTrue('0018,1020' in tags) | |
| 3468 self.assertEqual('SoftwareVersions', tags['0018,1020']['Name']) | |
| 3469 self.assertEqual('TooLong', tags['0018,1020']['Type']) | |
| 3470 self.assertEqual(None, tags['0018,1020']['Value']) | |
| 3471 | |
| 3472 tags = DoGet(_REMOTE, '/instances/%s/tags?ignore-length=0018-1020' % i) | |
| 3473 self.assertTrue('0018,1020' in tags) | |
| 3474 self.assertEqual('SoftwareVersions', tags['0018,1020']['Name']) | |
| 3475 self.assertEqual('String', tags['0018,1020']['Type']) | |
| 3476 self.assertTrue(tags['0018,1020']['Value'].startswith('Lorem ipsum dolor sit amet')) | |
| 3477 | |
| 3478 tags = DoGet(_REMOTE, '/instances/%s/tags?simplify' % i) | |
| 3479 self.assertTrue('SoftwareVersions' in tags) | |
| 3480 self.assertEqual(None, tags['SoftwareVersions']) | |
| 3481 self.assertTrue('HeartRate' in tags) | |
| 3482 self.assertEqual(474, int(tags['HeartRate'])) | |
| 3483 | |
| 3484 tags = DoGet(_REMOTE, '/instances/%s/simplified-tags' % i) | |
| 3485 self.assertTrue('SoftwareVersions' in tags) | |
| 3486 self.assertEqual(None, tags['SoftwareVersions']) | |
| 3487 | |
| 3488 tags = DoGet(_REMOTE, '/instances/%s/tags?simplify&ignore-length=0018-1020' % i) | |
| 3489 self.assertTrue('SoftwareVersions' in tags) | |
| 3490 self.assertTrue(tags['SoftwareVersions'].startswith('Lorem ipsum dolor sit amet')) | |
| 3491 | |
| 3492 tags = DoGet(_REMOTE, '/instances/%s/tags?simplify&ignore-length=SoftwareVersions' % i) | |
| 3493 self.assertTrue('SoftwareVersions' in tags) | |
| 3494 self.assertTrue(tags['SoftwareVersions'].startswith('Lorem ipsum dolor sit amet')) | |
| 3495 | |
| 3496 tags = DoGet(_REMOTE, '/series/%s/instances-tags' % series) | |
| 3497 self.assertEqual(1, len(tags)) | |
| 3498 self.assertTrue(i in tags.keys()) | |
| 3499 self.assertTrue('0018,1020' in tags[i]) | |
| 3500 self.assertEqual('TooLong', tags[i]['0018,1020']['Type']) | |
| 3501 | |
| 3502 tags = DoGet(_REMOTE, '/series/%s/instances-tags?ignore-length=SoftwareVersions' % series) | |
| 3503 self.assertEqual(1, len(tags)) | |
| 3504 self.assertTrue(i in tags.keys()) | |
| 3505 self.assertTrue('0018,1020' in tags[i]) | |
| 3506 self.assertEqual('String', tags[i]['0018,1020']['Type']) | |
| 3507 self.assertTrue(tags[i]['0018,1020']['Value'].startswith('Lorem ipsum dolor sit amet')) | |
| 3508 | |
|
127
1eea4d3a1ba9
test_extended_media
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
126
diff
changeset
|
3509 |
|
1eea4d3a1ba9
test_extended_media
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
126
diff
changeset
|
3510 def test_extended_media(self): |
|
1eea4d3a1ba9
test_extended_media
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
126
diff
changeset
|
3511 UploadInstance(_REMOTE, 'Knee/T1/IM-0001-0001.dcm') |
|
1eea4d3a1ba9
test_extended_media
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
126
diff
changeset
|
3512 |
|
1eea4d3a1ba9
test_extended_media
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
126
diff
changeset
|
3513 z = GetArchive(_REMOTE, '/patients/%s/media?extended' % DoGet(_REMOTE, '/patients')[0]) |
|
1eea4d3a1ba9
test_extended_media
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
126
diff
changeset
|
3514 self.assertEqual(2, len(z.namelist())) |
|
1eea4d3a1ba9
test_extended_media
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
126
diff
changeset
|
3515 self.assertTrue('IMAGES/IM0' in z.namelist()) |
|
1eea4d3a1ba9
test_extended_media
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
126
diff
changeset
|
3516 self.assertTrue('DICOMDIR' in z.namelist()) |
|
1eea4d3a1ba9
test_extended_media
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
126
diff
changeset
|
3517 |
|
1eea4d3a1ba9
test_extended_media
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
126
diff
changeset
|
3518 try: |
|
1eea4d3a1ba9
test_extended_media
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
126
diff
changeset
|
3519 os.remove('/tmp/DICOMDIR') |
|
1eea4d3a1ba9
test_extended_media
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
126
diff
changeset
|
3520 except: |
|
1eea4d3a1ba9
test_extended_media
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
126
diff
changeset
|
3521 # The file does not exist |
|
1eea4d3a1ba9
test_extended_media
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
126
diff
changeset
|
3522 pass |
|
1eea4d3a1ba9
test_extended_media
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
126
diff
changeset
|
3523 |
|
1eea4d3a1ba9
test_extended_media
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
126
diff
changeset
|
3524 z.extract('DICOMDIR', '/tmp') |
|
1eea4d3a1ba9
test_extended_media
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
126
diff
changeset
|
3525 a = subprocess.check_output([ FindExecutable('dciodvfy'), '/tmp/DICOMDIR' ], |
|
1eea4d3a1ba9
test_extended_media
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
126
diff
changeset
|
3526 stderr = subprocess.STDOUT).split('\n') |
|
1eea4d3a1ba9
test_extended_media
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
126
diff
changeset
|
3527 self.assertEqual(5, len(a)) |
|
1eea4d3a1ba9
test_extended_media
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
126
diff
changeset
|
3528 self.assertTrue(a[0].startswith('Warning')) |
|
1eea4d3a1ba9
test_extended_media
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
126
diff
changeset
|
3529 self.assertEqual('BasicDirectory', a[1]) |
|
1eea4d3a1ba9
test_extended_media
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
126
diff
changeset
|
3530 self.assertTrue('not present in standard DICOM IOD' in a[2]) |
|
1eea4d3a1ba9
test_extended_media
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
126
diff
changeset
|
3531 self.assertTrue('not present in standard DICOM IOD' in a[3]) |
|
1eea4d3a1ba9
test_extended_media
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
126
diff
changeset
|
3532 self.assertEqual('', a[4]) |
|
1eea4d3a1ba9
test_extended_media
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
126
diff
changeset
|
3533 |
|
1eea4d3a1ba9
test_extended_media
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
126
diff
changeset
|
3534 a = subprocess.check_output([ FindExecutable('dcentvfy'), '/tmp/DICOMDIR' ], |
|
1eea4d3a1ba9
test_extended_media
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
126
diff
changeset
|
3535 stderr = subprocess.STDOUT).split('\n') |
|
1eea4d3a1ba9
test_extended_media
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
126
diff
changeset
|
3536 self.assertEqual(1, len(a)) |
|
1eea4d3a1ba9
test_extended_media
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
126
diff
changeset
|
3537 self.assertEqual('', a[0]) |
|
1eea4d3a1ba9
test_extended_media
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
126
diff
changeset
|
3538 |
|
1eea4d3a1ba9
test_extended_media
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
126
diff
changeset
|
3539 a = subprocess.check_output([ FindExecutable('dcm2xml'), '/tmp/DICOMDIR' ]) |
|
1eea4d3a1ba9
test_extended_media
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
126
diff
changeset
|
3540 self.assertTrue(re.search('1.3.46.670589.11.17521.5.0.3124.2008081908590448738', a) != None) |
|
1eea4d3a1ba9
test_extended_media
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
126
diff
changeset
|
3541 |
|
1eea4d3a1ba9
test_extended_media
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
126
diff
changeset
|
3542 # Check the presence of the series description (extended tag) |
|
1eea4d3a1ba9
test_extended_media
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
126
diff
changeset
|
3543 self.assertTrue(re.search('T1W_aTSE', a) != None) |
|
1eea4d3a1ba9
test_extended_media
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
126
diff
changeset
|
3544 |
|
1eea4d3a1ba9
test_extended_media
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
126
diff
changeset
|
3545 os.remove('/tmp/DICOMDIR') |
|
1eea4d3a1ba9
test_extended_media
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
126
diff
changeset
|
3546 |
|
1eea4d3a1ba9
test_extended_media
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
126
diff
changeset
|
3547 |
|
132
149144d854bb
Orthanc.test_anonymize_relationships_1/2
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
130
diff
changeset
|
3548 def test_anonymize_relationships_1(self): |
|
133
f0d4c4707e64
test_anonymize_relationships_3
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
132
diff
changeset
|
3549 UploadInstance(_REMOTE, 'Knee/T1/IM-0001-0001.dcm') |
|
f0d4c4707e64
test_anonymize_relationships_3
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
132
diff
changeset
|
3550 UploadInstance(_REMOTE, 'Knee/T1/IM-0001-0002.dcm') |
|
132
149144d854bb
Orthanc.test_anonymize_relationships_1/2
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
130
diff
changeset
|
3551 study = '0a9b3153-2512774b-2d9580de-1fc3dcf6-3bd83918' |
|
149144d854bb
Orthanc.test_anonymize_relationships_1/2
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
130
diff
changeset
|
3552 |
|
149144d854bb
Orthanc.test_anonymize_relationships_1/2
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
130
diff
changeset
|
3553 anonymized = DoPost(_REMOTE, '/studies/%s/anonymize' % study, |
|
149144d854bb
Orthanc.test_anonymize_relationships_1/2
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
130
diff
changeset
|
3554 '{}', |
|
149144d854bb
Orthanc.test_anonymize_relationships_1/2
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
130
diff
changeset
|
3555 'application/json')['ID'] |
|
149144d854bb
Orthanc.test_anonymize_relationships_1/2
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
130
diff
changeset
|
3556 |
|
149144d854bb
Orthanc.test_anonymize_relationships_1/2
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
130
diff
changeset
|
3557 a = DoGet(_REMOTE, '/studies/%s/instances' % study) |
|
149144d854bb
Orthanc.test_anonymize_relationships_1/2
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
130
diff
changeset
|
3558 self.assertEqual(2, len(a)) |
|
149144d854bb
Orthanc.test_anonymize_relationships_1/2
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
130
diff
changeset
|
3559 a1 = a[0]['ID'] |
|
149144d854bb
Orthanc.test_anonymize_relationships_1/2
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
130
diff
changeset
|
3560 a2 = a[1]['ID'] |
|
149144d854bb
Orthanc.test_anonymize_relationships_1/2
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
130
diff
changeset
|
3561 |
|
149144d854bb
Orthanc.test_anonymize_relationships_1/2
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
130
diff
changeset
|
3562 b = DoGet(_REMOTE, '/studies/%s/instances' % anonymized) |
|
149144d854bb
Orthanc.test_anonymize_relationships_1/2
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
130
diff
changeset
|
3563 self.assertEqual(2, len(b)) |
|
149144d854bb
Orthanc.test_anonymize_relationships_1/2
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
130
diff
changeset
|
3564 b1 = b[0]['ID'] |
|
149144d854bb
Orthanc.test_anonymize_relationships_1/2
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
130
diff
changeset
|
3565 b2 = b[1]['ID'] |
|
149144d854bb
Orthanc.test_anonymize_relationships_1/2
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
130
diff
changeset
|
3566 |
|
149144d854bb
Orthanc.test_anonymize_relationships_1/2
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
130
diff
changeset
|
3567 SEQUENCE = '/instances/%s/content/ReferencedImageSequence' |
|
149144d854bb
Orthanc.test_anonymize_relationships_1/2
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
130
diff
changeset
|
3568 SOP = '/instances/%s/content/ReferencedImageSequence/%d/ReferencedSOPInstanceUID' |
|
149144d854bb
Orthanc.test_anonymize_relationships_1/2
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
130
diff
changeset
|
3569 CLASS = '/instances/%s/content/ReferencedImageSequence/%d/ReferencedSOPClassUID' |
|
149144d854bb
Orthanc.test_anonymize_relationships_1/2
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
130
diff
changeset
|
3570 FRAME = '/instances/%s/content/FrameOfReferenceUID' |
|
149144d854bb
Orthanc.test_anonymize_relationships_1/2
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
130
diff
changeset
|
3571 |
|
149144d854bb
Orthanc.test_anonymize_relationships_1/2
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
130
diff
changeset
|
3572 self.assertEqual(DoGet(_REMOTE, FRAME % a1), |
|
149144d854bb
Orthanc.test_anonymize_relationships_1/2
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
130
diff
changeset
|
3573 DoGet(_REMOTE, FRAME % a2)) |
|
149144d854bb
Orthanc.test_anonymize_relationships_1/2
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
130
diff
changeset
|
3574 self.assertEqual(DoGet(_REMOTE, FRAME % b1), |
|
149144d854bb
Orthanc.test_anonymize_relationships_1/2
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
130
diff
changeset
|
3575 DoGet(_REMOTE, FRAME % b2)) |
|
149144d854bb
Orthanc.test_anonymize_relationships_1/2
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
130
diff
changeset
|
3576 self.assertNotEqual(DoGet(_REMOTE, FRAME % a1), |
|
149144d854bb
Orthanc.test_anonymize_relationships_1/2
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
130
diff
changeset
|
3577 DoGet(_REMOTE, FRAME % b1)) |
|
149144d854bb
Orthanc.test_anonymize_relationships_1/2
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
130
diff
changeset
|
3578 self.assertNotEqual(DoGet(_REMOTE, FRAME % a2), |
|
149144d854bb
Orthanc.test_anonymize_relationships_1/2
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
130
diff
changeset
|
3579 DoGet(_REMOTE, FRAME % b2)) |
|
149144d854bb
Orthanc.test_anonymize_relationships_1/2
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
130
diff
changeset
|
3580 |
|
149144d854bb
Orthanc.test_anonymize_relationships_1/2
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
130
diff
changeset
|
3581 self.assertEqual(3, len(DoGet(_REMOTE, SEQUENCE % a1))) |
|
149144d854bb
Orthanc.test_anonymize_relationships_1/2
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
130
diff
changeset
|
3582 self.assertEqual(3, len(DoGet(_REMOTE, SEQUENCE % a2))) |
|
149144d854bb
Orthanc.test_anonymize_relationships_1/2
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
130
diff
changeset
|
3583 self.assertEqual(3, len(DoGet(_REMOTE, SEQUENCE % b1))) |
|
149144d854bb
Orthanc.test_anonymize_relationships_1/2
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
130
diff
changeset
|
3584 self.assertEqual(3, len(DoGet(_REMOTE, SEQUENCE % b2))) |
|
149144d854bb
Orthanc.test_anonymize_relationships_1/2
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
130
diff
changeset
|
3585 |
|
149144d854bb
Orthanc.test_anonymize_relationships_1/2
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
130
diff
changeset
|
3586 for i in range(3): |
|
149144d854bb
Orthanc.test_anonymize_relationships_1/2
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
130
diff
changeset
|
3587 self.assertEqual(DoGet(_REMOTE, SOP % (a1, i)), |
|
149144d854bb
Orthanc.test_anonymize_relationships_1/2
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
130
diff
changeset
|
3588 DoGet(_REMOTE, SOP % (a2, i))) |
|
149144d854bb
Orthanc.test_anonymize_relationships_1/2
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
130
diff
changeset
|
3589 self.assertEqual(DoGet(_REMOTE, SOP % (b1, i)), |
|
149144d854bb
Orthanc.test_anonymize_relationships_1/2
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
130
diff
changeset
|
3590 DoGet(_REMOTE, SOP % (b2, i))) |
|
149144d854bb
Orthanc.test_anonymize_relationships_1/2
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
130
diff
changeset
|
3591 self.assertNotEqual(DoGet(_REMOTE, SOP % (a1, i)), |
|
149144d854bb
Orthanc.test_anonymize_relationships_1/2
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
130
diff
changeset
|
3592 DoGet(_REMOTE, SOP % (b1, i))) |
|
149144d854bb
Orthanc.test_anonymize_relationships_1/2
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
130
diff
changeset
|
3593 self.assertNotEqual(DoGet(_REMOTE, SOP % (a2, i)), |
|
149144d854bb
Orthanc.test_anonymize_relationships_1/2
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
130
diff
changeset
|
3594 DoGet(_REMOTE, SOP % (b2, i))) |
|
149144d854bb
Orthanc.test_anonymize_relationships_1/2
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
130
diff
changeset
|
3595 self.assertEqual(DoGet(_REMOTE, CLASS % (a1, i)), |
|
149144d854bb
Orthanc.test_anonymize_relationships_1/2
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
130
diff
changeset
|
3596 DoGet(_REMOTE, CLASS % (b1, i))) |
|
149144d854bb
Orthanc.test_anonymize_relationships_1/2
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
130
diff
changeset
|
3597 self.assertEqual(DoGet(_REMOTE, CLASS % (a2, i)), |
|
149144d854bb
Orthanc.test_anonymize_relationships_1/2
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
130
diff
changeset
|
3598 DoGet(_REMOTE, CLASS % (b2, i))) |
|
149144d854bb
Orthanc.test_anonymize_relationships_1/2
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
130
diff
changeset
|
3599 |
|
149144d854bb
Orthanc.test_anonymize_relationships_1/2
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
130
diff
changeset
|
3600 |
|
149144d854bb
Orthanc.test_anonymize_relationships_1/2
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
130
diff
changeset
|
3601 def test_anonymize_relationships_2(self): |
|
133
f0d4c4707e64
test_anonymize_relationships_3
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
132
diff
changeset
|
3602 UploadInstance(_REMOTE, 'Comunix/Ct/IM-0001-0001.dcm') |
|
f0d4c4707e64
test_anonymize_relationships_3
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
132
diff
changeset
|
3603 UploadInstance(_REMOTE, 'Comunix/Ct/IM-0001-0002.dcm') |
|
132
149144d854bb
Orthanc.test_anonymize_relationships_1/2
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
130
diff
changeset
|
3604 study = '6c65289b-db2fcb71-7eaf73f4-8e12470c-a4d6d7cf' |
|
149144d854bb
Orthanc.test_anonymize_relationships_1/2
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
130
diff
changeset
|
3605 |
|
149144d854bb
Orthanc.test_anonymize_relationships_1/2
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
130
diff
changeset
|
3606 anonymized = DoPost(_REMOTE, '/studies/%s/anonymize' % study, |
|
149144d854bb
Orthanc.test_anonymize_relationships_1/2
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
130
diff
changeset
|
3607 '{}', |
|
149144d854bb
Orthanc.test_anonymize_relationships_1/2
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
130
diff
changeset
|
3608 'application/json')['ID'] |
|
149144d854bb
Orthanc.test_anonymize_relationships_1/2
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
130
diff
changeset
|
3609 |
|
149144d854bb
Orthanc.test_anonymize_relationships_1/2
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
130
diff
changeset
|
3610 a = DoGet(_REMOTE, '/studies/%s/instances' % study) |
|
149144d854bb
Orthanc.test_anonymize_relationships_1/2
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
130
diff
changeset
|
3611 self.assertEqual(2, len(a)) |
|
149144d854bb
Orthanc.test_anonymize_relationships_1/2
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
130
diff
changeset
|
3612 a1 = a[0]['ID'] |
|
149144d854bb
Orthanc.test_anonymize_relationships_1/2
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
130
diff
changeset
|
3613 a2 = a[1]['ID'] |
|
149144d854bb
Orthanc.test_anonymize_relationships_1/2
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
130
diff
changeset
|
3614 |
|
149144d854bb
Orthanc.test_anonymize_relationships_1/2
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
130
diff
changeset
|
3615 b = DoGet(_REMOTE, '/studies/%s/instances' % anonymized) |
|
149144d854bb
Orthanc.test_anonymize_relationships_1/2
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
130
diff
changeset
|
3616 self.assertEqual(2, len(b)) |
|
149144d854bb
Orthanc.test_anonymize_relationships_1/2
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
130
diff
changeset
|
3617 b1 = b[0]['ID'] |
|
149144d854bb
Orthanc.test_anonymize_relationships_1/2
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
130
diff
changeset
|
3618 b2 = b[1]['ID'] |
|
149144d854bb
Orthanc.test_anonymize_relationships_1/2
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
130
diff
changeset
|
3619 |
|
149144d854bb
Orthanc.test_anonymize_relationships_1/2
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
130
diff
changeset
|
3620 SEQUENCE = '/instances/%s/content/SourceImageSequence' |
|
149144d854bb
Orthanc.test_anonymize_relationships_1/2
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
130
diff
changeset
|
3621 SOP = '/instances/%s/content/SourceImageSequence/%d/ReferencedSOPInstanceUID' |
|
149144d854bb
Orthanc.test_anonymize_relationships_1/2
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
130
diff
changeset
|
3622 CLASS = '/instances/%s/content/SourceImageSequence/%d/ReferencedSOPClassUID' |
|
149144d854bb
Orthanc.test_anonymize_relationships_1/2
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
130
diff
changeset
|
3623 |
|
149144d854bb
Orthanc.test_anonymize_relationships_1/2
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
130
diff
changeset
|
3624 self.assertEqual(1, len(DoGet(_REMOTE, SEQUENCE % a1))) |
|
149144d854bb
Orthanc.test_anonymize_relationships_1/2
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
130
diff
changeset
|
3625 self.assertEqual(1, len(DoGet(_REMOTE, SEQUENCE % a2))) |
|
149144d854bb
Orthanc.test_anonymize_relationships_1/2
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
130
diff
changeset
|
3626 self.assertEqual(1, len(DoGet(_REMOTE, SEQUENCE % b1))) |
|
149144d854bb
Orthanc.test_anonymize_relationships_1/2
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
130
diff
changeset
|
3627 self.assertEqual(1, len(DoGet(_REMOTE, SEQUENCE % b2))) |
|
149144d854bb
Orthanc.test_anonymize_relationships_1/2
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
130
diff
changeset
|
3628 self.assertEqual(DoGet(_REMOTE, SOP % (a1, 0)), |
|
149144d854bb
Orthanc.test_anonymize_relationships_1/2
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
130
diff
changeset
|
3629 DoGet(_REMOTE, SOP % (a2, 0))) |
|
149144d854bb
Orthanc.test_anonymize_relationships_1/2
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
130
diff
changeset
|
3630 self.assertEqual(DoGet(_REMOTE, SOP % (b1, 0)), |
|
149144d854bb
Orthanc.test_anonymize_relationships_1/2
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
130
diff
changeset
|
3631 DoGet(_REMOTE, SOP % (b2, 0))) |
|
149144d854bb
Orthanc.test_anonymize_relationships_1/2
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
130
diff
changeset
|
3632 self.assertNotEqual(DoGet(_REMOTE, SOP % (a1, 0)), |
|
149144d854bb
Orthanc.test_anonymize_relationships_1/2
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
130
diff
changeset
|
3633 DoGet(_REMOTE, SOP % (b1, 0))) |
|
149144d854bb
Orthanc.test_anonymize_relationships_1/2
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
130
diff
changeset
|
3634 self.assertNotEqual(DoGet(_REMOTE, SOP % (a2, 0)), |
|
149144d854bb
Orthanc.test_anonymize_relationships_1/2
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
130
diff
changeset
|
3635 DoGet(_REMOTE, SOP % (b2, 0))) |
|
149144d854bb
Orthanc.test_anonymize_relationships_1/2
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
130
diff
changeset
|
3636 self.assertEqual(DoGet(_REMOTE, CLASS % (a1, 0)), |
|
149144d854bb
Orthanc.test_anonymize_relationships_1/2
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
130
diff
changeset
|
3637 DoGet(_REMOTE, CLASS % (b1, 0))) |
|
149144d854bb
Orthanc.test_anonymize_relationships_1/2
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
130
diff
changeset
|
3638 self.assertEqual(DoGet(_REMOTE, CLASS % (a2, 0)), |
|
149144d854bb
Orthanc.test_anonymize_relationships_1/2
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
130
diff
changeset
|
3639 DoGet(_REMOTE, CLASS % (b2, 0))) |
|
133
f0d4c4707e64
test_anonymize_relationships_3
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
132
diff
changeset
|
3640 |
|
f0d4c4707e64
test_anonymize_relationships_3
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
132
diff
changeset
|
3641 |
|
f0d4c4707e64
test_anonymize_relationships_3
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
132
diff
changeset
|
3642 def test_anonymize_relationships_3(self): |
|
f0d4c4707e64
test_anonymize_relationships_3
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
132
diff
changeset
|
3643 sr1 = UploadInstance(_REMOTE, 'HierarchicalAnonymization/StructuredReports/IM0')['ID'] |
|
f0d4c4707e64
test_anonymize_relationships_3
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
132
diff
changeset
|
3644 mr1 = UploadInstance(_REMOTE, 'HierarchicalAnonymization/StructuredReports/IM631')['ID'] |
|
f0d4c4707e64
test_anonymize_relationships_3
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
132
diff
changeset
|
3645 study = 'ef351eb2-c1147229-062736b8-35a151e3-e32d526b' |
|
f0d4c4707e64
test_anonymize_relationships_3
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
132
diff
changeset
|
3646 |
|
f0d4c4707e64
test_anonymize_relationships_3
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
132
diff
changeset
|
3647 anonymized = DoPost(_REMOTE, '/studies/%s/anonymize' % study, |
|
f0d4c4707e64
test_anonymize_relationships_3
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
132
diff
changeset
|
3648 { "Keep" : [ "ContentSequence" ] }) ['ID'] |
|
f0d4c4707e64
test_anonymize_relationships_3
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
132
diff
changeset
|
3649 |
|
f0d4c4707e64
test_anonymize_relationships_3
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
132
diff
changeset
|
3650 a = DoGet(_REMOTE, '/studies/%s/instances' % anonymized) |
|
f0d4c4707e64
test_anonymize_relationships_3
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
132
diff
changeset
|
3651 self.assertEqual(2, len(a)) |
|
f0d4c4707e64
test_anonymize_relationships_3
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
132
diff
changeset
|
3652 |
|
f0d4c4707e64
test_anonymize_relationships_3
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
132
diff
changeset
|
3653 if DoGet(_REMOTE, '/instances/%s/content/Modality' % a[0]['ID']) == 'SR': |
|
f0d4c4707e64
test_anonymize_relationships_3
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
132
diff
changeset
|
3654 sr2 = a[0]['ID'] |
|
f0d4c4707e64
test_anonymize_relationships_3
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
132
diff
changeset
|
3655 mr2 = a[1]['ID'] |
|
f0d4c4707e64
test_anonymize_relationships_3
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
132
diff
changeset
|
3656 else: |
|
f0d4c4707e64
test_anonymize_relationships_3
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
132
diff
changeset
|
3657 sr2 = a[1]['ID'] |
|
f0d4c4707e64
test_anonymize_relationships_3
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
132
diff
changeset
|
3658 mr2 = a[0]['ID'] |
|
f0d4c4707e64
test_anonymize_relationships_3
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
132
diff
changeset
|
3659 |
|
f0d4c4707e64
test_anonymize_relationships_3
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
132
diff
changeset
|
3660 self.assertEqual(DoGet(_REMOTE, '/instances/%s/content/Modality' % sr1), |
|
f0d4c4707e64
test_anonymize_relationships_3
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
132
diff
changeset
|
3661 DoGet(_REMOTE, '/instances/%s/content/Modality' % sr2)) |
|
f0d4c4707e64
test_anonymize_relationships_3
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
132
diff
changeset
|
3662 self.assertEqual(DoGet(_REMOTE, '/instances/%s/content/Modality' % mr1), |
|
f0d4c4707e64
test_anonymize_relationships_3
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
132
diff
changeset
|
3663 DoGet(_REMOTE, '/instances/%s/content/Modality' % mr2)) |
|
f0d4c4707e64
test_anonymize_relationships_3
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
132
diff
changeset
|
3664 |
|
f0d4c4707e64
test_anonymize_relationships_3
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
132
diff
changeset
|
3665 mrUid1 = DoGet(_REMOTE, '/instances/%s' % mr1)['MainDicomTags']['SOPInstanceUID'] |
|
f0d4c4707e64
test_anonymize_relationships_3
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
132
diff
changeset
|
3666 mrUid2 = DoGet(_REMOTE, '/instances/%s' % mr2)['MainDicomTags']['SOPInstanceUID'] |
|
f0d4c4707e64
test_anonymize_relationships_3
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
132
diff
changeset
|
3667 mrSeries1 = DoGet(_REMOTE, '/instances/%s/content/SeriesInstanceUID' % mr1).strip('\x00') |
|
f0d4c4707e64
test_anonymize_relationships_3
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
132
diff
changeset
|
3668 mrSeries2 = DoGet(_REMOTE, '/instances/%s/content/SeriesInstanceUID' % mr2).strip('\x00') |
|
f0d4c4707e64
test_anonymize_relationships_3
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
132
diff
changeset
|
3669 mrStudy1 = DoGet(_REMOTE, '/instances/%s/content/StudyInstanceUID' % mr1).strip('\x00') |
|
f0d4c4707e64
test_anonymize_relationships_3
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
132
diff
changeset
|
3670 mrStudy2 = DoGet(_REMOTE, '/instances/%s/content/StudyInstanceUID' % mr2).strip('\x00') |
|
f0d4c4707e64
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132
diff
changeset
|
3671 |
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test_anonymize_relationships_3
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
132
diff
changeset
|
3672 PATH1 = '/instances/%s/content/CurrentRequestedProcedureEvidenceSequence' |
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parents:
132
diff
changeset
|
3673 PATH2 = PATH1 + '/0/ReferencedSeriesSequence' |
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diff
changeset
|
3674 PATH3 = PATH2 + '/0/ReferencedSOPSequence' |
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test_anonymize_relationships_3
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parents:
132
diff
changeset
|
3675 PATH4 = PATH3 + '/0/ReferencedSOPInstanceUID' |
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f0d4c4707e64
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parents:
132
diff
changeset
|
3676 PATH5 = PATH3 + '/0/ReferencedSOPClassUID' |
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f0d4c4707e64
test_anonymize_relationships_3
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
132
diff
changeset
|
3677 |
|
f0d4c4707e64
test_anonymize_relationships_3
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
132
diff
changeset
|
3678 self.assertEqual(1, len(DoGet(_REMOTE, PATH1 % sr1))) |
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f0d4c4707e64
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Sebastien Jodogne <s.jodogne@gmail.com>
parents:
132
diff
changeset
|
3679 self.assertEqual(1, len(DoGet(_REMOTE, PATH2 % sr1))) |
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parents:
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diff
changeset
|
3680 self.assertEqual(1, len(DoGet(_REMOTE, PATH3 % sr1))) |
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parents:
132
diff
changeset
|
3681 self.assertEqual(DoGet(_REMOTE, PATH4 % sr1), mrUid1) |
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test_anonymize_relationships_3
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
132
diff
changeset
|
3682 self.assertEqual(mrSeries1, DoGet(_REMOTE, (PATH2 + '/0/SeriesInstanceUID') % sr1).strip('\x00')) |
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f0d4c4707e64
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parents:
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diff
changeset
|
3683 self.assertEqual(mrStudy1, DoGet(_REMOTE, (PATH1 + '/0/StudyInstanceUID') % sr1).strip('\x00')) |
|
f0d4c4707e64
test_anonymize_relationships_3
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parents:
132
diff
changeset
|
3684 |
|
f0d4c4707e64
test_anonymize_relationships_3
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parents:
132
diff
changeset
|
3685 self.assertEqual(1, len(DoGet(_REMOTE, PATH1 % sr2))) |
|
f0d4c4707e64
test_anonymize_relationships_3
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
132
diff
changeset
|
3686 self.assertEqual(1, len(DoGet(_REMOTE, PATH2 % sr2))) |
|
f0d4c4707e64
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parents:
132
diff
changeset
|
3687 self.assertEqual(1, len(DoGet(_REMOTE, PATH3 % sr2))) |
|
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parents:
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diff
changeset
|
3688 self.assertEqual(DoGet(_REMOTE, PATH5 % sr1), DoGet(_REMOTE, PATH5 % sr2)) |
|
f0d4c4707e64
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Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
changeset
|
3689 |
|
f0d4c4707e64
test_anonymize_relationships_3
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parents:
132
diff
changeset
|
3690 self.assertEqual(mrUid2, DoGet(_REMOTE, PATH4 % sr2).strip('\x00')) |
|
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parents:
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diff
changeset
|
3691 self.assertEqual(mrSeries2, DoGet(_REMOTE, (PATH2 + '/0/SeriesInstanceUID') % sr2).strip('\x00')) |
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diff
changeset
|
3692 self.assertEqual(mrStudy2, DoGet(_REMOTE, (PATH1 + '/0/StudyInstanceUID') % sr2).strip('\x00')) |
|
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parents:
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diff
changeset
|
3693 |
|
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test_anonymize_relationships_3
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parents:
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diff
changeset
|
3694 content1 = DoGet(_REMOTE, '/instances/%s/tags?simplify' % sr1) ['ContentSequence'] |
|
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diff
changeset
|
3695 content2 = DoGet(_REMOTE, '/instances/%s/tags?simplify' % sr2) ['ContentSequence'] |
|
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diff
changeset
|
3696 self.assertEqual(str(content1), str(content2)) |
|
141
5de178abe4d8
test_bitbucket_issue_94
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
138
diff
changeset
|
3697 |
|
5de178abe4d8
test_bitbucket_issue_94
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
138
diff
changeset
|
3698 |
|
5de178abe4d8
test_bitbucket_issue_94
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parents:
138
diff
changeset
|
3699 def test_bitbucket_issue_94(self): |
|
5de178abe4d8
test_bitbucket_issue_94
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diff
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|
3700 # "a simple instance modification should not modify FrameOfReferenceUID + ..." |
|
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test_bitbucket_issue_94
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diff
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|
3701 # https://bitbucket.org/sjodogne/orthanc/issues/94 |
|
5de178abe4d8
test_bitbucket_issue_94
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parents:
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diff
changeset
|
3702 i = UploadInstance(_REMOTE, 'Issue94.dcm')['ID'] |
|
5de178abe4d8
test_bitbucket_issue_94
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parents:
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diff
changeset
|
3703 |
|
5de178abe4d8
test_bitbucket_issue_94
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parents:
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diff
changeset
|
3704 source = DoGet(_REMOTE, '/instances/%s/attachments/dicom/data' % i) |
|
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test_bitbucket_issue_94
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diff
changeset
|
3705 |
|
5de178abe4d8
test_bitbucket_issue_94
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parents:
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diff
changeset
|
3706 modified = DoPost(_REMOTE, '/instances/%s/modify' % i, |
|
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test_bitbucket_issue_94
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diff
changeset
|
3707 { "Replace" : {"PatientID" : "toto"}, "Force": True}) |
|
5de178abe4d8
test_bitbucket_issue_94
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
138
diff
changeset
|
3708 |
|
5de178abe4d8
test_bitbucket_issue_94
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parents:
138
diff
changeset
|
3709 anonymized = DoPost(_REMOTE, '/instances/%s/anonymize' % i) |
|
5de178abe4d8
test_bitbucket_issue_94
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diff
changeset
|
3710 |
|
5de178abe4d8
test_bitbucket_issue_94
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138
diff
changeset
|
3711 a = ExtractDicomTags(source, [ 'FrameOfReferenceUID' ]) |
|
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test_bitbucket_issue_94
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diff
changeset
|
3712 self.assertEqual(1, len(a)) |
|
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test_bitbucket_issue_94
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parents:
138
diff
changeset
|
3713 |
|
5de178abe4d8
test_bitbucket_issue_94
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
138
diff
changeset
|
3714 b = ExtractDicomTags(modified, [ 'FrameOfReferenceUID' ]) |
|
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test_bitbucket_issue_94
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parents:
138
diff
changeset
|
3715 self.assertEqual(1, len(b)) |
|
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test_bitbucket_issue_94
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parents:
138
diff
changeset
|
3716 |
|
5de178abe4d8
test_bitbucket_issue_94
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parents:
138
diff
changeset
|
3717 c = ExtractDicomTags(anonymized, [ 'FrameOfReferenceUID' ]) |
|
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test_bitbucket_issue_94
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diff
changeset
|
3718 self.assertEqual(1, len(c)) |
|
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test_bitbucket_issue_94
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
138
diff
changeset
|
3719 |
|
5de178abe4d8
test_bitbucket_issue_94
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parents:
138
diff
changeset
|
3720 self.assertEqual(a, b) # Modified DICOM |
|
5de178abe4d8
test_bitbucket_issue_94
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parents:
138
diff
changeset
|
3721 self.assertNotEqual(a, c) # Anonymized DICOM |