Mercurial > hg > orthanc-tests
annotate Tests/Tests.py @ 176:48cc188ffb09
strip trailing 0 char that appears with some findscu versions
| author | am@osimis.io |
|---|---|
| date | Thu, 20 Sep 2018 12:35:32 +0200 |
| parents | 09ca519087a1 |
| children | ef6b791c6d62 |
| rev | line source |
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| 22 | 1 #!/usr/bin/env python |
| 2 # -*- coding: utf-8 -*- | |
| 3 | |
| 4 | |
| 3 | 5 # Orthanc - A Lightweight, RESTful DICOM Store |
| 73 | 6 # Copyright (C) 2012-2016 Sebastien Jodogne, Medical Physics |
| 3 | 7 # Department, University Hospital of Liege, Belgium |
|
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8 # Copyright (C) 2017-2018 Osimis S.A., Belgium |
| 3 | 9 # |
| 10 # This program is free software: you can redistribute it and/or | |
| 11 # modify it under the terms of the GNU General Public License as | |
| 12 # published by the Free Software Foundation, either version 3 of the | |
| 13 # License, or (at your option) any later version. | |
| 14 # | |
| 15 # This program is distributed in the hope that it will be useful, but | |
| 16 # WITHOUT ANY WARRANTY; without even the implied warranty of | |
| 17 # MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU | |
| 18 # General Public License for more details. | |
| 19 # | |
| 20 # You should have received a copy of the GNU General Public License | |
| 21 # along with this program. If not, see <http://www.gnu.org/licenses/>. | |
| 22 | |
| 23 | |
| 14 | 24 import tempfile |
| 3 | 25 import unittest |
| 36 | 26 import base64 |
| 3 | 27 |
| 11 | 28 from PIL import ImageChops |
| 3 | 29 from Toolbox import * |
| 13 | 30 from xml.dom import minidom |
| 3 | 31 |
| 32 _LOCAL = None | |
| 33 _REMOTE = None | |
| 34 | |
| 35 | |
| 36 def SetOrthancParameters(local, remote): | |
| 37 global _LOCAL, _REMOTE | |
| 38 _LOCAL = local | |
| 39 _REMOTE = remote | |
| 40 | |
| 41 | |
| 14 | 42 def ExtractDicomTags(rawDicom, tags): |
| 43 with tempfile.NamedTemporaryFile(delete = True) as f: | |
| 44 f.write(rawDicom) | |
| 45 f.flush() | |
| 45 | 46 data = subprocess.check_output([ FindExecutable('dcm2xml'), f.name ]) |
| 14 | 47 |
| 48 result = [] | |
| 49 for tag in tags: | |
| 50 match = re.search('<element[^>]+name="%s">([^>]*)</element>' % tag, data) | |
| 51 if match == None: | |
| 52 result.append('') | |
| 53 else: | |
| 54 result.append(match.group(1)) | |
| 55 | |
| 56 return result | |
| 57 | |
| 58 | |
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59 def CompareLists(a, b): |
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60 if len(a) != len(b): |
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61 return False |
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62 |
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63 for i in range(len(a)): |
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64 d = a[i] - b[i] |
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65 if abs(d) >= 0.51: # Add some tolerance for rounding errors |
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66 return False |
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67 |
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68 return True |
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69 |
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70 |
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71 def CompareTags(a, b, tagsToIgnore): |
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72 for i in tagsToIgnore: |
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73 if i in a: |
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74 del a[i] |
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75 if i in b: |
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76 del b[i] |
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77 |
| 123 | 78 if a.keys() == b.keys(): |
| 79 return True | |
| 80 else: | |
| 81 print('Mismatch in tags: %s' % str(set(a.keys()) ^ set(b.keys()))) | |
| 82 return False | |
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83 |
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84 |
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85 def CallFindScu(args): |
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86 p = subprocess.Popen([ FindExecutable('findscu'), |
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87 '-P', '-aec', _REMOTE['DicomAet'], '-aet', _LOCAL['DicomAet'], |
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88 _REMOTE['Server'], str(_REMOTE['DicomPort']) ] + args, |
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89 stderr=subprocess.PIPE) |
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90 return p.communicate()[1] |
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91 |
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92 |
| 142 | 93 def GetMoveScuCommand(): |
| 94 return [ | |
| 95 FindExecutable('movescu'), | |
| 96 '--move', _LOCAL['DicomAet'], # Target AET (i.e. storescp) | |
| 97 '--call', _REMOTE['DicomAet'], # Called AET (i.e. Orthanc) | |
| 98 '--aetitle', _LOCAL['DicomAet'], # Calling AET (i.e. storescp) | |
| 99 _REMOTE['Server'], | |
| 100 str(_REMOTE['DicomPort']) | |
| 101 ] | |
| 102 | |
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103 def CallMoveScu(args): |
| 142 | 104 subprocess.check_call(GetMoveScuCommand() + args, |
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105 stderr=subprocess.PIPE) |
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106 |
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107 |
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108 |
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109 def GenerateTestSequence(): |
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110 return [ |
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111 { |
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112 'StudyDescription': 'Hello^', |
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113 'ReferencedStudySequence' : [ |
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114 { |
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115 'StudyDescription': 'Toto', |
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116 }, |
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117 { |
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118 'StudyDescription': 'Tata', |
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119 }, |
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120 ] |
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121 }, |
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122 { |
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123 'StudyDescription': 'Sébastien^', |
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124 'StudyDate' : '19700202', |
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125 } |
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126 ] |
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127 |
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128 |
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129 |
| 15 | 130 |
| 3 | 131 class Orthanc(unittest.TestCase): |
| 132 def setUp(self): | |
| 83 | 133 if (sys.version_info >= (3, 0)): |
| 134 # Remove annoying warnings about unclosed socket in Python 3 | |
| 135 import warnings | |
| 136 warnings.simplefilter("ignore", ResourceWarning) | |
| 137 | |
| 3 | 138 DropOrthanc(_LOCAL) |
| 139 DropOrthanc(_REMOTE) | |
| 174 | 140 UninstallLuaCallbacks(_REMOTE) |
| 45 | 141 #print "In test", self._testMethodName |
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142 |
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143 def AssertSameImages(self, truth, url): |
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144 im = GetImage(_REMOTE, url) |
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145 self.assertTrue(CompareLists(truth, im.getdata())) |
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146 |
| 3 | 147 |
| 148 def test_system(self): | |
| 173 | 149 self.assertTrue(IsOrthancVersionAbove(_LOCAL, 0, 8, 6)) |
| 150 self.assertFalse(IsOrthancVersionAbove(_LOCAL, 0, 8, 7)) | |
| 151 self.assertTrue(IsOrthancVersionAbove(_LOCAL, 0, 7, 6)) | |
| 152 self.assertFalse(IsOrthancVersionAbove(_LOCAL, 0, 9, 6)) | |
| 153 self.assertFalse(IsOrthancVersionAbove(_LOCAL, 1, 8, 6)) | |
| 3 | 154 self.assertTrue('Version' in DoGet(_REMOTE, '/system')) |
| 155 self.assertEqual('0', DoGet(_REMOTE, '/statistics')['TotalDiskSize']) | |
| 156 self.assertEqual('0', DoGet(_REMOTE, '/statistics')['TotalUncompressedSize']) | |
| 157 | |
| 158 def test_upload(self): | |
| 173 | 159 self.assertEqual('0', DoGet(_REMOTE, '/statistics')['TotalDiskSize']) |
| 160 self.assertEqual('0', DoGet(_REMOTE, '/statistics')['TotalUncompressedSize']) | |
| 161 | |
| 162 sizeDummyCT = 2472 | |
| 163 sizeOverwrite = 2476 | |
| 164 instance = '66a662ce-7430e543-bad44d47-0dc5a943-ec7a538d' | |
| 165 | |
| 3 | 166 u = UploadInstance(_REMOTE, 'DummyCT.dcm') |
| 167 self.assertEqual('Success', u['Status']) | |
| 173 | 168 |
| 169 j = int(DoGet(_REMOTE, '/instances/%s/attachments/dicom-as-json/size' % instance)) | |
| 170 s = sizeDummyCT + j | |
| 171 self.assertEqual('%d' % s, DoGet(_REMOTE, '/statistics')['TotalDiskSize']) | |
| 172 self.assertEqual('%d' % s, DoGet(_REMOTE, '/statistics')['TotalUncompressedSize']) | |
| 173 | |
| 3 | 174 u = UploadInstance(_REMOTE, 'DummyCT.dcm') |
| 175 self.assertEqual(1, len(DoGet(_REMOTE, '/patients'))) | |
| 176 self.assertEqual(1, len(DoGet(_REMOTE, '/studies'))) | |
| 177 self.assertEqual(1, len(DoGet(_REMOTE, '/series'))) | |
| 178 self.assertEqual(1, len(DoGet(_REMOTE, '/instances'))) | |
| 173 | 179 self.assertEqual('%d' % s, DoGet(_REMOTE, '/statistics')['TotalDiskSize']) |
| 180 self.assertEqual('%d' % s, DoGet(_REMOTE, '/statistics')['TotalUncompressedSize']) | |
| 181 | |
| 182 i = DoGet(_REMOTE, '/instances/%s/simplified-tags' % instance) | |
| 3 | 183 self.assertEqual('20070101', i['StudyDate']) |
| 173 | 184 self.assertEqual('KNIX', i['PatientName']) |
| 185 | |
| 186 if IsOrthancVersionAbove(_REMOTE, 1, 4, 2): | |
| 187 # Overwriting | |
| 188 self.assertEqual('Success', u['Status']) | |
| 189 else: | |
| 190 self.assertEqual('AlreadyStored', u['Status']) | |
| 191 | |
| 192 u = UploadInstance(_REMOTE, 'DummyCT-overwrite.dcm') | |
| 193 self.assertEqual(1, len(DoGet(_REMOTE, '/patients'))) | |
| 194 self.assertEqual(1, len(DoGet(_REMOTE, '/studies'))) | |
| 195 self.assertEqual(1, len(DoGet(_REMOTE, '/series'))) | |
| 196 self.assertEqual(1, len(DoGet(_REMOTE, '/instances'))) | |
| 197 | |
| 198 if IsOrthancVersionAbove(_REMOTE, 1, 4, 2): | |
| 199 # Overwriting | |
| 200 self.assertEqual('Success', u['Status']) | |
| 201 j2 = int(DoGet(_REMOTE, '/instances/%s/attachments/dicom-as-json/size' % instance)) | |
| 202 s2 = sizeOverwrite + j2 | |
| 203 self.assertNotEqual(s, s2) | |
| 204 self.assertNotEqual(j, j2) | |
| 205 self.assertEqual('%d' % s2, DoGet(_REMOTE, '/statistics')['TotalDiskSize']) | |
| 206 self.assertEqual('%d' % s2, DoGet(_REMOTE, '/statistics')['TotalUncompressedSize']) | |
| 207 i = DoGet(_REMOTE, '/instances/%s/simplified-tags' % instance) | |
| 208 self.assertEqual('ANOTHER', i['PatientName']) | |
| 209 else: | |
| 210 self.assertEqual('AlreadyStored', u['Status']) | |
| 211 self.assertEqual('%d' % s, DoGet(_REMOTE, '/statistics')['TotalDiskSize']) | |
| 212 self.assertEqual('%d' % s, DoGet(_REMOTE, '/statistics')['TotalUncompressedSize']) | |
| 3 | 213 |
| 5 | 214 def test_upload_2(self): |
| 3 | 215 i = UploadInstance(_REMOTE, 'DummyCT.dcm')['ID'] |
| 216 instance = DoGet(_REMOTE, '/instances/%s' % i) | |
| 217 self.assertEqual(i, instance['ID']) | |
| 218 self.assertEqual('1.2.840.113619.2.176.2025.1499492.7040.1171286242.109', | |
| 219 instance['MainDicomTags']['SOPInstanceUID']) | |
| 220 | |
| 221 series = DoGet(_REMOTE, '/series/%s' % instance['ParentSeries']) | |
| 222 self.assertEqual('1.2.840.113619.2.176.2025.1499492.7391.1171285944.394', | |
| 223 series['MainDicomTags']['SeriesInstanceUID']) | |
| 224 | |
| 225 study = DoGet(_REMOTE, '/studies/%s' % series['ParentStudy']) | |
| 226 self.assertEqual('1.2.840.113619.2.176.2025.1499492.7391.1171285944.390', | |
| 227 study['MainDicomTags']['StudyInstanceUID']) | |
| 228 | |
| 229 patient = DoGet(_REMOTE, '/patients/%s' % study['ParentPatient']) | |
| 230 self.assertEqual('ozp00SjY2xG', | |
| 231 patient['MainDicomTags']['PatientID']) | |
| 232 | |
| 233 dicom = DoGet(_REMOTE, '/instances/%s/file' % instance['ID']) | |
| 234 self.assertEqual(2472, len(dicom)) | |
| 235 self.assertEqual('3e29b869978b6db4886355a2b1132124', ComputeMD5(dicom)) | |
| 236 self.assertEqual(1, len(DoGet(_REMOTE, '/instances/%s/frames' % i))) | |
| 237 self.assertEqual('TWINOW', DoGet(_REMOTE, '/instances/%s/simplified-tags' % i)['StationName']) | |
| 238 self.assertEqual('TWINOW', DoGet(_REMOTE, '/instances/%s/tags' % i)['0008,1010']['Value']) | |
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239 self.assertEqual('TWINOW', DoGet(_REMOTE, '/instances/%s/tags?simplify' % i)['StationName']) |
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240 self.assertEqual('TWINOW', DoGet(_REMOTE, '/instances/%s/tags?short' % i)['0008,1010']) |
| 3 | 241 |
| 242 | |
| 5 | 243 def test_images(self): |
| 244 i = UploadInstance(_REMOTE, 'Phenix/IM-0001-0001.dcm')['ID'] | |
| 245 self.assertEqual(1, len(DoGet(_REMOTE, '/instances/%s/frames' % i))) | |
| 3 | 246 |
| 5 | 247 im = GetImage(_REMOTE, '/instances/%s/preview' % i) |
| 248 self.assertEqual("L", im.mode) | |
| 249 self.assertEqual(512, im.size[0]) | |
| 250 self.assertEqual(358, im.size[1]) | |
| 251 | |
| 252 im = GetImage(_REMOTE, '/instances/%s/image-uint8' % i) | |
| 253 self.assertEqual("L", im.mode) | |
| 254 self.assertEqual(512, im.size[0]) | |
| 255 self.assertEqual(358, im.size[1]) | |
| 256 | |
| 257 im = GetImage(_REMOTE, '/instances/%s/image-uint16' % i) | |
| 258 self.assertEqual(512, im.size[0]) | |
| 259 self.assertEqual(358, im.size[1]) | |
| 260 | |
| 261 im = GetImage(_REMOTE, '/instances/%s/frames/0/preview' % i) | |
| 262 self.assertEqual("L", im.mode) | |
| 263 self.assertEqual(512, im.size[0]) | |
| 264 self.assertEqual(358, im.size[1]) | |
| 265 | |
| 266 im = GetImage(_REMOTE, '/instances/%s/frames/0/image-uint8' % i) | |
| 267 self.assertEqual("L", im.mode) | |
| 268 self.assertEqual(512, im.size[0]) | |
| 269 self.assertEqual(358, im.size[1]) | |
| 270 | |
| 271 im = GetImage(_REMOTE, '/instances/%s/frames/0/image-uint16' % i) | |
| 272 self.assertEqual(512, im.size[0]) | |
| 273 self.assertEqual(358, im.size[1]) | |
| 64 | 274 |
| 275 # This is Little Endian Explicit | |
| 276 self.assertEqual('1.2.840.10008.1.2.1', DoGet(_REMOTE, '/instances/%s/header?simplify' % i)['TransferSyntaxUID']) | |
| 277 | |
| 6 | 278 |
| 279 def test_hierarchy(self): | |
| 280 UploadFolder(_REMOTE, 'Brainix/Epi') | |
| 281 UploadFolder(_REMOTE, 'Brainix/Flair') | |
| 282 UploadFolder(_REMOTE, 'Knee/T1') | |
| 283 UploadFolder(_REMOTE, 'Knee/T2') | |
| 284 | |
| 285 p = DoGet(_REMOTE, '/patients') | |
| 286 s = DoGet(_REMOTE, '/studies') | |
| 287 t = DoGet(_REMOTE, '/series') | |
| 288 self.assertEqual(2, len(p)) | |
| 289 self.assertEqual(2, len(s)) | |
| 290 self.assertEqual(4, len(t)) | |
| 291 self.assertEqual(94, len(DoGet(_REMOTE, '/instances'))) | |
| 292 | |
| 293 brainixPatient = '16738bc3-e47ed42a-43ce044c-a3414a45-cb069bd0' | |
| 294 brainixStudy = '27f7126f-4f66fb14-03f4081b-f9341db2-53925988' | |
| 295 brainixEpi = '2ac1316d-3e432022-62eabff2-c59f5475-9b1ac3f8' | |
| 296 brainixFlair = '1e2c125c-411b8e86-3f4fe68e-a7584dd3-c6da78f0' | |
| 297 | |
| 298 kneePatient = 'ca29faea-b6a0e17f-067743a1-8b778011-a48b2a17' | |
| 299 kneeStudy = '0a9b3153-2512774b-2d9580de-1fc3dcf6-3bd83918' | |
| 300 kneeT1 = '6de73705-c4e65c1b-9d9ea1b5-cabcd8e7-f15e4285' | |
| 301 kneeT2 = 'bbf7a453-0d34251a-03663b55-46bb31b9-ffd74c59' | |
| 302 | |
| 303 self.assertTrue(brainixPatient in p) | |
| 304 self.assertTrue(kneePatient in p) | |
| 305 self.assertTrue(brainixStudy in s) | |
| 306 self.assertTrue(kneeStudy in s) | |
| 307 self.assertTrue(brainixEpi in t) | |
| 308 self.assertTrue(brainixFlair in t) | |
| 309 self.assertTrue(kneeT1 in t) | |
| 310 self.assertTrue(kneeT2 in t) | |
| 311 | |
| 312 self.assertEqual(44, len(DoGet(_REMOTE, '/patients/%s/instances' % brainixPatient))) | |
| 313 self.assertEqual(2, len(DoGet(_REMOTE, '/patients/%s/series' % brainixPatient))) | |
| 314 self.assertEqual(1, len(DoGet(_REMOTE, '/patients/%s/studies' % brainixPatient))) | |
| 315 | |
| 316 self.assertEqual(50, len(DoGet(_REMOTE, '/patients/%s/instances' % kneePatient))) | |
| 317 self.assertEqual(2, len(DoGet(_REMOTE, '/patients/%s/series' % kneePatient))) | |
| 318 self.assertEqual(1, len(DoGet(_REMOTE, '/patients/%s/studies' % kneePatient))) | |
| 319 | |
| 320 self.assertEqual(2, len(DoGet(_REMOTE, '/studies/%s/series' % brainixStudy))) | |
| 321 self.assertEqual(44, len(DoGet(_REMOTE, '/studies/%s/instances' % brainixStudy))) | |
| 322 | |
| 323 self.assertEqual(2, len(DoGet(_REMOTE, '/studies/%s/series' % kneeStudy))) | |
| 324 self.assertEqual(50, len(DoGet(_REMOTE, '/studies/%s/instances' % kneeStudy))) | |
| 325 | |
| 326 self.assertEqual(22, len(DoGet(_REMOTE, '/series/%s/instances' % brainixEpi))) | |
| 327 self.assertEqual(22, len(DoGet(_REMOTE, '/series/%s/instances' % brainixFlair))) | |
| 328 self.assertEqual(24, len(DoGet(_REMOTE, '/series/%s/instances' % kneeT1))) | |
| 329 self.assertEqual(26, len(DoGet(_REMOTE, '/series/%s/instances' % kneeT2))) | |
| 330 | |
| 331 for patient in p: | |
| 332 for study in DoGet(_REMOTE, '/patients/%s/studies' % patient): | |
| 333 self.assertEqual(patient, study['ParentPatient']) | |
| 334 for series in DoGet(_REMOTE, '/studies/%s/series' % study['ID']): | |
| 335 self.assertEqual(study['ID'], series['ParentStudy']) | |
| 336 for instance in DoGet(_REMOTE, '/series/%s/instances' % series['ID']): | |
| 337 self.assertEqual(series['ID'], instance['ParentSeries']) | |
| 338 | |
| 339 self.assertEqual(json.dumps(DoGet(_REMOTE, '/instances/%s/attachments/dicom-as-json/data' % instance['ID'])), | |
| 340 json.dumps(DoGet(_REMOTE, '/instances/%s/tags' % instance['ID']))) | |
| 341 | |
| 342 | |
| 343 r = DoDelete(_REMOTE, "/studies/%s" % brainixStudy)['RemainingAncestor'] | |
| 344 self.assertEqual(1, len(DoGet(_REMOTE, '/patients'))) | |
| 345 self.assertEqual(1, len(DoGet(_REMOTE, '/studies'))) | |
| 346 self.assertEqual(2, len(DoGet(_REMOTE, '/series'))) | |
| 347 self.assertEqual(50, len(DoGet(_REMOTE, '/instances'))) | |
| 348 self.assertEqual(None, r) | |
| 349 | |
| 350 r = DoDelete(_REMOTE, "/series/%s" % kneeT2)['RemainingAncestor'] | |
| 351 self.assertEqual(1, len(DoGet(_REMOTE, '/patients'))) | |
| 352 self.assertEqual(1, len(DoGet(_REMOTE, '/studies'))) | |
| 353 self.assertEqual(1, len(DoGet(_REMOTE, '/series'))) | |
| 354 self.assertEqual(24, len(DoGet(_REMOTE, '/instances'))) | |
| 355 self.assertEqual('Study', r['Type']) | |
| 356 self.assertEqual(kneeStudy, r['ID']) | |
| 357 | |
| 358 r = DoDelete(_REMOTE, "/instances/%s" % DoGet(_REMOTE, '/instances')[0])['RemainingAncestor'] | |
| 359 self.assertEqual(1, len(DoGet(_REMOTE, '/patients'))) | |
| 360 self.assertEqual(1, len(DoGet(_REMOTE, '/studies'))) | |
| 361 self.assertEqual(1, len(DoGet(_REMOTE, '/series'))) | |
| 362 self.assertEqual(23, len(DoGet(_REMOTE, '/instances'))) | |
| 363 self.assertEqual('Series', r['Type']) | |
| 364 self.assertEqual(kneeT1, r['ID']) | |
| 365 | |
| 366 r = DoDelete(_REMOTE, "/patients/%s" % kneePatient)['RemainingAncestor'] | |
| 367 self.assertEqual(0, len(DoGet(_REMOTE, '/patients'))) | |
| 368 self.assertEqual(0, len(DoGet(_REMOTE, '/studies'))) | |
| 369 self.assertEqual(0, len(DoGet(_REMOTE, '/series'))) | |
| 370 self.assertEqual(0, len(DoGet(_REMOTE, '/instances'))) | |
| 371 self.assertEqual(None, r) | |
| 372 | |
| 373 DropOrthanc(_REMOTE) | |
| 374 self.assertEqual('0', DoGet(_REMOTE, '/statistics')['TotalDiskSize']) | |
| 375 self.assertEqual('0', DoGet(_REMOTE, '/statistics')['TotalUncompressedSize']) | |
| 7 | 376 |
| 377 | |
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378 def test_multiframe(self): |
| 7 | 379 i = UploadInstance(_REMOTE, 'Multiframe.dcm')['ID'] |
| 380 self.assertEqual(76, len(DoGet(_REMOTE, '/instances/%s/frames' % i))) | |
| 381 | |
| 382 im = GetImage(_REMOTE, '/instances/%s/frames/0/preview' % i) | |
| 383 self.assertEqual("L", im.mode) | |
| 384 self.assertEqual(512, im.size[0]) | |
| 385 self.assertEqual(512, im.size[1]) | |
| 386 | |
| 387 DoGet(_REMOTE, '/instances/%s/frames/0/image-uint8' % i) | |
| 388 DoGet(_REMOTE, '/instances/%s/frames/0/image-uint16' % i) | |
| 389 DoGet(_REMOTE, '/instances/%s/frames/75/preview' % i) | |
| 390 self.assertRaises(Exception, lambda: DoGet(_REMOTE, '/instances/%s/frames/aaa/preview' % i)) | |
| 391 self.assertRaises(Exception, lambda: DoGet(_REMOTE, '/instances/%s/frames/76/preview' % i)) | |
| 392 | |
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393 |
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394 def test_changes(self): |
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395 # Check emptiness |
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396 c = DoGet(_REMOTE, '/changes') |
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397 self.assertEqual(0, len(c['Changes'])) |
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398 self.assertEqual(0, c['Last']) |
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399 self.assertTrue(c['Done']) |
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400 c = DoGet(_REMOTE, '/changes?last') |
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401 self.assertEqual(0, len(c['Changes'])) |
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402 self.assertEqual(0, c['Last']) |
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403 self.assertTrue(c['Done']) |
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404 |
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405 # Add 1 instance |
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406 i = UploadInstance(_REMOTE, 'Brainix/Flair/IM-0001-0001.dcm')['ID'] |
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407 c = DoGet(_REMOTE, '/changes') |
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408 begin = c['Last'] |
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409 self.assertEqual(4, len(c['Changes'])) |
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410 self.assertTrue(c['Done']) |
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411 self.assertEqual(c['Changes'][-1]['Seq'], c['Last']) |
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412 |
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413 c = DoGet(_REMOTE, '/changes?last') |
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414 self.assertEqual(1, len(c['Changes'])) |
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415 self.assertEqual(begin, c['Last']) |
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416 self.assertTrue(c['Done']) |
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417 c = DoGet(_REMOTE, '/changes?limit=1&since=' + str(begin - 1)) |
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418 self.assertEqual(1, len(c['Changes'])) |
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419 self.assertEqual(begin, c['Last']) |
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420 self.assertTrue(c['Done']) |
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421 c = DoGet(_REMOTE, '/changes?limit=1&since=' + str(begin - 2)) |
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422 self.assertEqual(1, len(c['Changes'])) |
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423 self.assertEqual(begin - 1, c['Last']) |
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424 self.assertFalse(c['Done']) |
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425 c = DoGet(_REMOTE, '/changes?limit=1&since=' + str(begin - 3)) |
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426 self.assertEqual(1, len(c['Changes'])) |
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427 self.assertEqual(begin - 2, c['Last']) |
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428 self.assertFalse(c['Done']) |
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429 |
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430 UploadFolder(_REMOTE, 'Knee/T1') |
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431 UploadFolder(_REMOTE, 'Knee/T2') |
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432 since = begin |
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433 countPatients = 0 |
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434 countStudies = 0 |
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435 countSeries = 0 |
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436 countInstances = 0 |
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437 completed = 0 |
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438 while True: |
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439 c = DoGet(_REMOTE, '/changes', { 'since' : since, 'limit' : 3 }) |
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440 since = c['Last'] |
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441 for i in c['Changes']: |
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442 if i['ResourceType'] == 'Instance': |
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443 countInstances += 1 |
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444 if i['ResourceType'] == 'Patient': |
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445 countPatients += 1 |
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446 if i['ResourceType'] == 'Study': |
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447 countStudies += 1 |
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448 if i['ResourceType'] == 'Series': |
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449 countSeries += 1 |
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450 if i['ChangeType'] == 'NewInstance': |
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451 countInstances += 1 |
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452 if i['ChangeType'] == 'NewPatient': |
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453 countPatients += 1 |
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454 if i['ChangeType'] == 'NewStudy': |
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455 countStudies += 1 |
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456 if i['ChangeType'] == 'NewSeries': |
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457 countSeries += 1 |
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458 if i['ChangeType'] == 'CompletedSeries': |
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459 completed += 1 |
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460 self.assertTrue('ID' in i) |
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461 self.assertTrue('Path' in i) |
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462 self.assertTrue('Seq' in i) |
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463 if c['Done']: |
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464 break |
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465 |
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466 self.assertEqual(2 * 50, countInstances) |
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467 self.assertEqual(2 * 1, countPatients) |
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468 self.assertEqual(2 * 1, countStudies) |
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469 self.assertEqual(2 * 2, countSeries) |
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470 self.assertEqual(0, completed) |
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471 |
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472 |
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473 def test_archive(self): |
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474 UploadInstance(_REMOTE, 'Knee/T1/IM-0001-0001.dcm') |
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475 UploadInstance(_REMOTE, 'Knee/T2/IM-0001-0001.dcm') |
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476 |
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477 z = GetArchive(_REMOTE, '/patients/%s/archive' % DoGet(_REMOTE, '/patients')[0]) |
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478 self.assertEqual(2, len(z.namelist())) |
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479 |
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480 z = GetArchive(_REMOTE, '/studies/%s/archive' % DoGet(_REMOTE, '/studies')[0]) |
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481 self.assertEqual(2, len(z.namelist())) |
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482 |
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483 z = GetArchive(_REMOTE, '/series/%s/archive' % DoGet(_REMOTE, '/series')[0]) |
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484 self.assertEqual(1, len(z.namelist())) |
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485 |
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486 UploadInstance(_REMOTE, 'Brainix/Flair/IM-0001-0001.dcm') |
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487 |
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488 z = GetArchive(_REMOTE, '/patients/%s/archive' % DoGet(_REMOTE, '/patients')[0]) |
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489 self.assertEqual(2, len(z.namelist())) |
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490 |
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491 |
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492 def test_media_archive(self): |
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493 UploadInstance(_REMOTE, 'Knee/T1/IM-0001-0001.dcm') |
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494 UploadInstance(_REMOTE, 'Knee/T2/IM-0001-0001.dcm') |
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495 |
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496 z = GetArchive(_REMOTE, '/patients/%s/media' % DoGet(_REMOTE, '/patients')[0]) |
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497 self.assertEqual(3, len(z.namelist())) |
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498 self.assertTrue('IMAGES/IM0' in z.namelist()) |
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499 self.assertTrue('IMAGES/IM1' in z.namelist()) |
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500 self.assertTrue('DICOMDIR' in z.namelist()) |
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501 |
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502 try: |
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503 os.remove('/tmp/DICOMDIR') |
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504 except: |
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505 # The file does not exist |
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506 pass |
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507 |
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508 z.extract('DICOMDIR', '/tmp') |
| 45 | 509 a = subprocess.check_output([ FindExecutable('dciodvfy'), '/tmp/DICOMDIR' ], |
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510 stderr = subprocess.STDOUT).split('\n') |
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511 self.assertEqual(3, len(a)) |
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512 self.assertTrue(a[0].startswith('Warning')) |
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513 self.assertEqual('BasicDirectory', a[1]) |
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514 self.assertEqual('', a[2]) |
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515 |
| 45 | 516 a = subprocess.check_output([ FindExecutable('dcentvfy'), '/tmp/DICOMDIR' ], |
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517 stderr = subprocess.STDOUT).split('\n') |
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518 self.assertEqual(1, len(a)) |
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519 self.assertEqual('', a[0]) |
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520 |
| 45 | 521 a = subprocess.check_output([ FindExecutable('dcm2xml'), '/tmp/DICOMDIR' ]) |
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522 self.assertTrue(re.search('1.3.46.670589.11.17521.5.0.3124.2008081908590448738', a) != None) |
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523 self.assertTrue(re.search('1.3.46.670589.11.17521.5.0.3124.2008081909113806560', a) != None) |
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524 |
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525 os.remove('/tmp/DICOMDIR') |
| 10 | 526 |
| 527 | |
| 528 def test_protection(self): | |
| 529 UploadInstance(_REMOTE, 'Knee/T1/IM-0001-0001.dcm') | |
| 530 UploadInstance(_REMOTE, 'Brainix/Flair/IM-0001-0001.dcm') | |
| 531 self.assertEqual(2, len(DoGet(_REMOTE, '/patients'))) | |
| 532 a = DoGet(_REMOTE, '/patients')[0] | |
| 533 b = DoGet(_REMOTE, '/patients')[1] | |
| 534 self.assertEqual(0, DoGet(_REMOTE, '/patients/%s/protected' % a)) | |
| 535 DoPut(_REMOTE, '/patients/%s/protected' % a, '0', 'text/plain') | |
| 536 self.assertEqual(0, DoGet(_REMOTE, '/patients/%s/protected' % a)) | |
| 537 DoPut(_REMOTE, '/patients/%s/protected' % a, '1', 'text/plain') | |
| 538 self.assertEqual(1, DoGet(_REMOTE, '/patients/%s/protected' % a)) | |
| 539 DoPut(_REMOTE, '/patients/%s/protected' % a, '0', 'text/plain') | |
| 540 self.assertEqual(0, DoGet(_REMOTE, '/patients/%s/protected' % a)) | |
| 541 | |
| 542 | |
| 12 | 543 def test_raw_tags(self): |
| 10 | 544 i = UploadInstance(_REMOTE, 'PrivateTags.dcm')['ID'] |
| 545 | |
| 546 dicom = DoGet(_REMOTE, '/instances/%s/file' % i) | |
| 547 self.assertEqual('1a7c56cb02d6e742cc9c856a8ac182e3', ComputeMD5(dicom)) | |
| 548 | |
| 549 s = '/instances/%s/content/' % i | |
| 550 | |
| 551 self.assertEqual('LOGIQBOOK', DoGet(_REMOTE, s + '0008-1010').strip()) | |
| 552 self.assertRaises(Exception, lambda: DoGet(_REMOTE, s + '0008-1011')) | |
| 553 | |
| 554 self.assertEqual('Abdomen', DoGet(_REMOTE, s + '7fe1-1001/0/7fe1-1008/0/7fe1-1057').strip()) | |
| 555 self.assertEqual('cla_3c', DoGet(_REMOTE, s + '7fe1-1001/0/7fe1-1008/8/7fe1-1057').strip()) | |
| 556 | |
| 557 UploadInstance(_REMOTE, 'Brainix/Epi/IM-0001-0001.dcm') | |
| 558 UploadInstance(_REMOTE, 'Brainix/Flair/IM-0001-0001.dcm') | |
| 559 UploadInstance(_REMOTE, 'Knee/T1/IM-0001-0001.dcm') | |
| 560 UploadInstance(_REMOTE, 'Knee/T2/IM-0001-0001.dcm') | |
| 561 | |
| 562 for i in DoGet(_REMOTE, '/instances'): | |
| 563 aid = DoGet(_REMOTE, '/instances/%s' % i)['MainDicomTags']['SOPInstanceUID'] | |
| 564 self.assertEqual(aid, DoGet(_REMOTE, '/instances/%s/content/0008-0018' % i).replace(chr(0), '')) | |
| 565 | |
| 566 | |
| 567 def test_raw_tags_mdn(self): | |
| 568 # Bug reported by Cyril Paulus | |
| 569 i = UploadInstance(_REMOTE, 'PrivateMDNTags.dcm')['ID'] | |
| 570 self.assertAlmostEqual(0.000027, DoGet(_REMOTE, '/instances/%s/content/7053-1000' % i)) | |
| 571 | |
| 572 | |
| 573 def test_modify_instance(self): | |
| 574 i = UploadInstance(_REMOTE, 'PrivateTags.dcm')['ID'] | |
| 575 modified = DoPost(_REMOTE, '/instances/%s/modify' % i, | |
| 576 json.dumps({ | |
| 577 "Replace" : { | |
| 578 "PatientName" : "hello", | |
| 579 #"PatientID" : "world" | |
| 580 }, | |
| 581 "Remove" : [ "StationName" ], | |
|
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582 "RemovePrivateTags" : True |
| 10 | 583 }), |
| 584 'application/json') | |
| 585 j = DoPost(_REMOTE, '/instances', modified, 'application/dicom')['ID'] | |
| 586 | |
| 587 self.assertNotEqual('hello', DoGet(_REMOTE, '/instances/%s/content/0010-0010' % i).strip()) | |
| 588 #self.assertNotEqual('world', DoGet(_REMOTE, '/instances/%s/content/0010-0020' % i).strip()) | |
| 83 | 589 self.assertEqual('LOGIQBOOK', DoGet(_REMOTE, '/instances/%s/content/0008-1010' % i).strip()) |
| 10 | 590 DoGet(_REMOTE, '/instances/%s/content/6003-1010' % i) # Some private tag |
| 591 | |
| 592 self.assertEqual('hello', DoGet(_REMOTE, '/instances/%s/content/0010-0010' % j).strip()) | |
| 593 #self.assertEqual('world', DoGet(_REMOTE, '/instances/%s/content/0010-0020' % j).strip()) | |
| 594 self.assertRaises(Exception, lambda: DoGet(_REMOTE, '/instances/%s/content/0008-1010' % j)) | |
| 595 self.assertRaises(Exception, lambda: DoGet(_REMOTE, '/instances/%s/content/6003-1010' % j)) | |
| 596 | |
| 597 | |
| 598 def test_modify_series(self): | |
| 599 # Upload 4 images from the same series | |
| 600 for i in range(4): | |
| 601 UploadInstance(_REMOTE, 'Brainix/Epi/IM-0001-000%d.dcm' % (i + 1)) | |
| 602 | |
| 603 origSeries = DoGet(_REMOTE, '/series')[0] | |
| 604 newSeries = DoPost(_REMOTE, '/series/%s/modify' % origSeries, | |
| 605 '{"Replace":{"PatientName":"Jodogne"}}', | |
| 606 'application/json')['ID'] | |
| 607 | |
| 608 self.assertEqual(origSeries, DoGet(_REMOTE, '/series/%s' % newSeries)['ModifiedFrom']) | |
| 609 instances = DoGet(_REMOTE, '/series/%s' % newSeries)['Instances'] | |
| 610 self.assertEqual(4, len(instances)) | |
| 611 for i in instances: | |
| 612 j = DoGet(_REMOTE, '/instances/%s' % i)['ModifiedFrom'] | |
| 613 self.assertEqual(newSeries, DoGet(_REMOTE, '/instances/%s' % i)['ParentSeries']) | |
| 614 self.assertEqual(origSeries, DoGet(_REMOTE, '/instances/%s' % j)['ParentSeries']) | |
| 615 | |
| 616 self.assertEqual('Jodogne', DoGet(_REMOTE, '/instances/%s/content/0010-0010' % i).strip()) | |
| 617 self.assertNotEqual('Jodogne', DoGet(_REMOTE, '/instances/%s/content/0010-0010' % j).strip()) | |
| 618 | |
| 619 | |
| 620 def test_modify_study(self): | |
| 621 # Upload 4 images from the 2 series of the same study | |
| 622 for i in range(4): | |
| 623 UploadInstance(_REMOTE, 'Brainix/Flair/IM-0001-000%d.dcm' % (i + 1)) | |
| 624 UploadInstance(_REMOTE, 'Brainix/Epi/IM-0001-000%d.dcm' % (i + 1)) | |
| 625 | |
| 626 origStudy = DoGet(_REMOTE, '/studies')[0] | |
| 627 newStudy = DoPost(_REMOTE, '/studies/%s/modify' % origStudy, | |
| 628 '{"Replace":{"PatientName":"Jodogne"}}', | |
| 629 'application/json')['ID'] | |
| 630 | |
| 631 self.assertEqual(origStudy, DoGet(_REMOTE, '/studies/%s' % newStudy)['ModifiedFrom']) | |
| 632 series = DoGet(_REMOTE, '/studies/%s' % newStudy)['Series'] | |
| 633 self.assertEqual(2, len(series)) | |
| 634 for s in series: | |
| 635 ss = DoGet(_REMOTE, '/series/%s' % s)['ModifiedFrom'] | |
| 636 self.assertEqual(newStudy, DoGet(_REMOTE, '/series/%s' % s)['ParentStudy']) | |
| 637 self.assertEqual(origStudy, DoGet(_REMOTE, '/series/%s' % ss)['ParentStudy']) | |
| 638 | |
| 639 instances = DoGet(_REMOTE, '/series/%s' % s)['Instances'] | |
| 640 for i in instances: | |
| 641 j = DoGet(_REMOTE, '/instances/%s' % i)['ModifiedFrom'] | |
| 642 self.assertEqual(s, DoGet(_REMOTE, '/instances/%s' % i)['ParentSeries']) | |
| 643 self.assertEqual(ss, DoGet(_REMOTE, '/instances/%s' % j)['ParentSeries']) | |
| 644 | |
| 645 self.assertEqual('Jodogne', DoGet(_REMOTE, '/instances/%s/content/0010-0010' % i).strip()) | |
| 646 self.assertNotEqual('Jodogne', DoGet(_REMOTE, '/instances/%s/content/0010-0010' % j).strip()) | |
| 647 | |
| 648 | |
| 649 def test_anonymize_series(self): | |
| 650 # Upload 4 images from the same series | |
| 651 for i in range(4): | |
| 652 UploadInstance(_REMOTE, 'Brainix/Epi/IM-0001-000%d.dcm' % (i + 1)) | |
| 653 | |
| 654 origSeries = DoGet(_REMOTE, '/series')[0] | |
| 655 newSeries = DoPost(_REMOTE, '/series/%s/anonymize' % origSeries, | |
| 656 '{}', | |
| 657 'application/json')['ID'] | |
| 658 | |
| 659 self.assertEqual(origSeries, DoGet(_REMOTE, '/series/%s' % newSeries)['AnonymizedFrom']) | |
| 660 instances = DoGet(_REMOTE, '/series/%s' % newSeries)['Instances'] | |
| 661 self.assertEqual(4, len(instances)) | |
| 662 for i in instances: | |
| 663 j = DoGet(_REMOTE, '/instances/%s' % i)['AnonymizedFrom'] | |
| 664 self.assertEqual(newSeries, DoGet(_REMOTE, '/instances/%s' % i)['ParentSeries']) | |
| 665 self.assertEqual(origSeries, DoGet(_REMOTE, '/instances/%s' % j)['ParentSeries']) | |
| 666 | |
| 667 DoGet(_REMOTE, '/instances/%s/content/0008-1010' % j) | |
| 668 self.assertRaises(Exception, lambda: DoGet(_REMOTE, '/instances/%s/content/0008-1010' % i)) | |
| 669 | |
| 670 | |
| 671 def test_anonymize_study(self): | |
| 672 # Upload 4 images from the 2 series of the same study | |
| 673 for i in range(4): | |
| 674 UploadInstance(_REMOTE, 'Brainix/Flair/IM-0001-000%d.dcm' % (i + 1)) | |
| 675 UploadInstance(_REMOTE, 'Brainix/Epi/IM-0001-000%d.dcm' % (i + 1)) | |
| 676 | |
| 677 origStudy = DoGet(_REMOTE, '/studies')[0] | |
| 678 newStudy = DoPost(_REMOTE,'/studies/%s/anonymize' % origStudy, | |
| 679 '{"Replace":{"PatientName":"Jodogne"}}', | |
| 680 'application/json')['ID'] | |
| 681 | |
| 682 self.assertEqual(origStudy, DoGet(_REMOTE, '/studies/%s' % newStudy)['AnonymizedFrom']) | |
| 683 series = DoGet(_REMOTE, '/studies/%s' % newStudy)['Series'] | |
| 684 self.assertEqual(2, len(series)) | |
| 685 for s in series: | |
| 686 ss = DoGet(_REMOTE, '/series/%s' % s)['AnonymizedFrom'] | |
| 687 self.assertEqual(newStudy, DoGet(_REMOTE, '/series/%s' % s)['ParentStudy']) | |
| 688 self.assertEqual(origStudy, DoGet(_REMOTE, '/series/%s' % ss)['ParentStudy']) | |
| 689 | |
| 690 instances = DoGet(_REMOTE, '/series/%s' % s)['Instances'] | |
| 691 for i in instances: | |
| 692 j = DoGet(_REMOTE, '/instances/%s' % i)['AnonymizedFrom'] | |
| 693 self.assertEqual(s, DoGet(_REMOTE, '/instances/%s' % i)['ParentSeries']) | |
| 694 self.assertEqual(ss, DoGet(_REMOTE, '/instances/%s' % j)['ParentSeries']) | |
| 695 | |
| 696 self.assertEqual('Jodogne', DoGet(_REMOTE, '/instances/%s/content/0010-0010' % i).strip()) | |
| 697 self.assertNotEqual('Jodogne', DoGet(_REMOTE, '/instances/%s/content/0010-0010' % j).strip()) | |
| 11 | 698 |
| 699 | |
| 700 | |
| 701 def test_storescu(self): | |
| 702 # Check emptiness | |
| 703 e = DoGet(_REMOTE, '/exports') | |
| 704 self.assertEqual(0, len(e['Exports'])) | |
| 705 self.assertEqual(0, e['Last']) | |
| 706 self.assertTrue(e['Done']) | |
| 707 e = DoGet(_REMOTE, '/exports?last') | |
| 708 self.assertEqual(0, len(e['Exports'])) | |
| 709 self.assertEqual(0, e['Last']) | |
| 710 self.assertTrue(e['Done']) | |
| 711 | |
| 712 # Add 1 instance | |
| 713 i = UploadInstance(_REMOTE, 'DummyCT.dcm')['ID'] | |
| 714 self.assertEqual(0, len(DoGet(_LOCAL, '/patients'))) | |
| 715 | |
| 716 # Export the instance | |
| 717 j = DoPost(_REMOTE, '/modalities/orthanctest/store', str(i), 'text/plain') # instance | |
| 718 self.assertEqual(1, len(DoGet(_LOCAL, '/patients'))) | |
| 719 self.assertEqual(1, len(DoGet(_LOCAL, '/studies'))) | |
| 720 self.assertEqual(1, len(DoGet(_LOCAL, '/series'))) | |
| 721 self.assertEqual(1, len(DoGet(_LOCAL, '/instances'))) | |
| 722 | |
| 723 e = DoGet(_REMOTE, '/exports') | |
| 724 self.assertEqual(1, len(e['Exports'])) | |
| 725 self.assertTrue(e['Done']) | |
| 726 self.assertEqual(e['Exports'][-1]['Seq'], e['Last']) | |
| 727 e = DoGet(_REMOTE, '/exports?limit=1') | |
| 728 self.assertEqual(1, len(e['Exports'])) | |
| 729 self.assertTrue(e['Done']) | |
| 730 self.assertEqual(e['Exports'][-1]['Seq'], e['Last']) | |
| 731 e = DoGet(_REMOTE, '/exports?last') | |
| 732 self.assertEqual(1, len(e['Exports'])) | |
| 733 self.assertTrue(e['Done']) | |
| 734 self.assertEqual(e['Exports'][-1]['Seq'], e['Last']) | |
| 735 seqInstance = e['Last'] | |
| 736 | |
| 737 # Export the series | |
| 738 j = DoPost(_REMOTE, '/modalities/orthanctest/store', 'f2635388-f01d497a-15f7c06b-ad7dba06-c4c599fe', 'text/plain') | |
| 739 | |
| 740 e = DoGet(_REMOTE, '/exports') | |
| 741 self.assertEqual(2, len(e['Exports'])) | |
| 742 self.assertTrue(e['Done']) | |
| 743 self.assertEqual(e['Exports'][-1]['Seq'], e['Last']) | |
| 744 seqSeries = e['Last'] | |
| 745 self.assertNotEqual(seqInstance, seqSeries) | |
| 746 e = DoGet(_REMOTE, '/exports?limit=1&since=0') | |
| 747 self.assertEqual(1, len(e['Exports'])) | |
| 748 self.assertFalse(e['Done']) | |
| 749 self.assertEqual(e['Exports'][-1]['Seq'], seqInstance) | |
| 750 e = DoGet(_REMOTE, '/exports?limit=1&since=' + str(seqInstance)) | |
| 751 self.assertEqual(1, len(e['Exports'])) | |
| 752 self.assertTrue(e['Done']) | |
| 753 self.assertEqual(e['Exports'][-1]['Seq'], seqSeries) | |
| 754 e = DoGet(_REMOTE, '/exports?last') | |
| 755 self.assertEqual(1, len(e['Exports'])) | |
| 756 self.assertTrue(e['Done']) | |
| 757 self.assertEqual(e['Exports'][-1]['Seq'], seqSeries) | |
| 758 | |
| 759 # Export the study | |
| 760 j = DoPost(_REMOTE, '/modalities/orthanctest/store', 'b9c08539-26f93bde-c81ab0d7-bffaf2cb-a4d0bdd0', 'text/plain') | |
| 761 seqStudy = DoGet(_REMOTE, '/exports')['Last'] | |
| 762 | |
| 763 # Export the patient | |
| 764 j = DoPost(_REMOTE, '/modalities/orthanctest/store', '6816cb19-844d5aee-85245eba-28e841e6-2414fae2', 'text/plain') | |
| 765 self.assertEqual(1, len(DoGet(_LOCAL, '/patients'))) | |
| 766 self.assertEqual(1, len(DoGet(_LOCAL, '/studies'))) | |
| 767 self.assertEqual(1, len(DoGet(_LOCAL, '/series'))) | |
| 768 self.assertEqual(1, len(DoGet(_LOCAL, '/instances'))) | |
| 769 | |
| 770 e = DoGet(_REMOTE, '/exports') | |
| 771 self.assertEqual(4, len(e['Exports'])) | |
| 772 self.assertTrue(e['Done']) | |
| 773 self.assertEqual(e['Exports'][-1]['Seq'], e['Last']) | |
| 774 seqPatient = e['Last'] | |
| 775 self.assertNotEqual(seqInstance, seqSeries) | |
| 776 self.assertNotEqual(seqSeries, seqStudy) | |
| 777 self.assertNotEqual(seqStudy, seqPatient) | |
| 778 self.assertTrue(seqInstance < seqSeries) | |
| 779 self.assertTrue(seqSeries < seqStudy) | |
| 780 self.assertTrue(seqStudy < seqPatient) | |
| 781 e = DoGet(_REMOTE, '/exports?limit=1&since=0') | |
| 782 self.assertEqual(1, len(e['Exports'])) | |
| 783 self.assertFalse(e['Done']) | |
| 784 self.assertEqual(e['Exports'][-1]['Seq'], seqInstance) | |
| 785 e = DoGet(_REMOTE, '/exports?limit=1&since=' + str(seqInstance)) | |
| 786 self.assertEqual(1, len(e['Exports'])) | |
| 787 self.assertFalse(e['Done']) | |
| 788 self.assertEqual(e['Exports'][-1]['Seq'], seqSeries) | |
| 789 e = DoGet(_REMOTE, '/exports?limit=1&since=' + str(seqSeries)) | |
| 790 self.assertEqual(1, len(e['Exports'])) | |
| 791 self.assertFalse(e['Done']) | |
| 792 self.assertEqual(e['Exports'][-1]['Seq'], seqStudy) | |
| 793 e = DoGet(_REMOTE, '/exports?limit=1&since=' + str(seqStudy)) | |
| 794 self.assertEqual(1, len(e['Exports'])) | |
| 795 self.assertTrue(e['Done']) | |
| 796 self.assertEqual(e['Exports'][-1]['Seq'], seqPatient) | |
| 797 e = DoGet(_REMOTE, '/exports?last') | |
| 798 self.assertEqual(1, len(e['Exports'])) | |
| 799 self.assertTrue(e['Done']) | |
| 800 self.assertEqual(e['Exports'][-1]['Seq'], seqPatient) | |
| 801 | |
| 802 | |
| 803 # Check the content of the logged information | |
| 804 e = DoGet(_REMOTE, '/exports')['Exports'] | |
| 805 | |
| 806 if 'PatientID' in e[0]: | |
| 807 # Since Orthanc 0.8.6 | |
| 808 patient = 'PatientID' | |
| 809 study = 'StudyInstanceUID' | |
| 810 series = 'SeriesInstanceUID' | |
| 811 instance = 'SOPInstanceUID' | |
| 812 else: | |
| 813 # Up to Orthanc 0.8.5 | |
| 814 patient = 'PatientId' | |
| 815 study = 'StudyInstanceUid' | |
| 816 series = 'SeriesInstanceUid' | |
| 817 instance = 'SopInstanceUid' | |
| 818 | |
| 819 for k in range(4): | |
| 820 self.assertTrue('Date' in e[k]) | |
| 821 self.assertTrue('Seq' in e[k]) | |
| 822 self.assertEqual('orthanctest', e[k]['RemoteModality']) | |
| 823 | |
| 824 self.assertEqual(10, len(e[0])) | |
| 825 self.assertEqual('Instance', e[0]['ResourceType']) | |
| 826 self.assertEqual('66a662ce-7430e543-bad44d47-0dc5a943-ec7a538d', e[0]['ID']) | |
| 827 self.assertEqual('/instances/66a662ce-7430e543-bad44d47-0dc5a943-ec7a538d', e[0]['Path']) | |
| 828 self.assertEqual('1.2.840.113619.2.176.2025.1499492.7040.1171286242.109', e[0][instance]) | |
| 829 self.assertEqual('1.2.840.113619.2.176.2025.1499492.7391.1171285944.394', e[0][series]) | |
| 830 self.assertEqual('1.2.840.113619.2.176.2025.1499492.7391.1171285944.390', e[0][study]) | |
| 831 self.assertEqual('ozp00SjY2xG', e[0][patient]) | |
| 832 | |
| 833 self.assertEqual(9, len(e[1])) | |
| 834 self.assertEqual('Series', e[1]['ResourceType']) | |
| 835 self.assertEqual('f2635388-f01d497a-15f7c06b-ad7dba06-c4c599fe', e[1]['ID']) | |
| 836 self.assertEqual('/series/f2635388-f01d497a-15f7c06b-ad7dba06-c4c599fe', e[1]['Path']) | |
| 837 self.assertEqual('1.2.840.113619.2.176.2025.1499492.7391.1171285944.394', e[1][series]) | |
| 838 self.assertEqual('1.2.840.113619.2.176.2025.1499492.7391.1171285944.390', e[1][study]) | |
| 839 self.assertEqual('ozp00SjY2xG', e[1][patient]) | |
| 840 | |
| 841 self.assertEqual(8, len(e[2])) | |
| 842 self.assertEqual('Study', e[2]['ResourceType']) | |
| 843 self.assertEqual('b9c08539-26f93bde-c81ab0d7-bffaf2cb-a4d0bdd0', e[2]['ID']) | |
| 844 self.assertEqual('/studies/b9c08539-26f93bde-c81ab0d7-bffaf2cb-a4d0bdd0', e[2]['Path']) | |
| 845 self.assertEqual('1.2.840.113619.2.176.2025.1499492.7391.1171285944.390', e[2][study]) | |
| 846 self.assertEqual('ozp00SjY2xG', e[2][patient]) | |
| 847 | |
| 848 self.assertEqual(7, len(e[3])) | |
| 849 self.assertEqual('Patient', e[3]['ResourceType']) | |
| 850 self.assertEqual('6816cb19-844d5aee-85245eba-28e841e6-2414fae2', e[3]['ID']) | |
| 851 self.assertEqual('/patients/6816cb19-844d5aee-85245eba-28e841e6-2414fae2', e[3]['Path']) | |
| 852 self.assertEqual('ozp00SjY2xG', e[3][patient]) | |
| 853 | |
| 854 DropOrthanc(_REMOTE) | |
| 855 self.assertEqual(0, len(DoGet(_REMOTE, '/exports')['Exports'])) | |
| 856 | |
| 857 | |
| 858 def test_store_peer(self): | |
| 859 self.assertEqual(0, len(DoGet(_LOCAL, '/exports')['Exports'])) | |
| 860 self.assertEqual(0, len(DoGet(_REMOTE, '/exports')['Exports'])) | |
| 861 | |
| 862 i = UploadInstance(_REMOTE, 'DummyCT.dcm')['ID'] | |
| 863 self.assertEqual(0, len(DoGet(_LOCAL, '/patients'))) | |
| 864 self.assertEqual(1, len(DoGet(_REMOTE, '/patients'))) | |
| 865 | |
| 866 j = DoPost(_REMOTE, '/peers/peer/store', str(i), 'text/plain') | |
| 867 self.assertEqual(1, len(DoGet(_LOCAL, '/patients'))) | |
| 868 self.assertEqual(1, len(DoGet(_REMOTE, '/patients'))) | |
| 869 | |
| 870 self.assertEqual(1, len(DoGet(_REMOTE, '/exports')['Exports'])) | |
| 871 | |
| 872 DropOrthanc(_REMOTE) | |
| 873 self.assertEqual(0, len(DoGet(_REMOTE, '/exports')['Exports'])) | |
| 874 | |
| 875 | |
| 876 def test_bulk_storescu(self): | |
| 877 self.assertEqual(0, len(DoGet(_LOCAL, '/patients'))) | |
| 878 | |
| 879 a = UploadInstance(_REMOTE, 'Knee/T1/IM-0001-0001.dcm') | |
| 880 b = UploadInstance(_REMOTE, 'Knee/T2/IM-0001-0001.dcm') | |
| 881 | |
| 882 j = DoPost(_REMOTE, '/modalities/orthanctest/store', [ a['ID'], b['ID'] ], 'application/json') | |
| 883 self.assertEqual(2, len(DoGet(_LOCAL, '/instances'))) | |
| 884 | |
| 885 DropOrthanc(_LOCAL) | |
| 886 | |
| 887 # Send using patient's UUID | |
| 888 self.assertEqual(0, len(DoGet(_LOCAL, '/instances'))) | |
| 889 j = DoPost(_REMOTE, '/modalities/orthanctest/store', | |
| 890 [ 'ca29faea-b6a0e17f-067743a1-8b778011-a48b2a17' ], 'application/json') | |
| 891 self.assertEqual(2, len(DoGet(_LOCAL, '/instances'))) | |
| 892 | |
| 893 | |
| 894 def test_color(self): | |
| 895 i = UploadInstance(_REMOTE, 'ColorTestMalaterre.dcm')['ID'] | |
| 896 im = GetImage(_REMOTE, '/instances/%s/preview' % i) | |
| 897 self.assertEqual("RGB", im.mode) | |
| 898 self.assertEqual(41, im.size[0]) | |
| 899 self.assertEqual(41, im.size[1]) | |
| 900 | |
| 901 # http://effbot.org/zone/pil-comparing-images.htm | |
| 13 | 902 truth = Image.open(GetDatabasePath('ColorTestMalaterre.png')) |
| 11 | 903 self.assertTrue(ImageChops.difference(im, truth).getbbox() is None) |
| 904 | |
| 905 | |
| 12 | 906 def test_faking_ruby_put(self): |
| 907 UploadInstance(_REMOTE, 'Knee/T1/IM-0001-0001.dcm') | |
| 908 UploadInstance(_REMOTE, 'Brainix/Flair/IM-0001-0001.dcm') | |
| 909 self.assertEqual(2, len(DoGet(_REMOTE, '/patients'))) | |
| 910 a = DoGet(_REMOTE, '/patients')[0] | |
| 911 b = DoGet(_REMOTE, '/patients')[1] | |
| 912 self.assertEqual(0, DoGet(_REMOTE, '/patients/%s/protected' % a)) | |
| 913 DoGet(_REMOTE, '/patients/%s/protected' % a, data = { '_method' : 'PUT' }, body = '0') | |
| 914 self.assertEqual(0, DoGet(_REMOTE, '/patients/%s/protected' % a)) | |
| 915 DoGet(_REMOTE, '/patients/%s/protected' % a, data = { '_method' : 'PUT' }, body = '1') | |
| 916 self.assertEqual(1, DoGet(_REMOTE, '/patients/%s/protected' % a)) | |
| 917 DoGet(_REMOTE, '/patients/%s/protected' % a, data = { '_method' : 'PUT' }, body = '0') | |
| 918 self.assertEqual(0, DoGet(_REMOTE, '/patients/%s/protected' % a)) | |
| 919 | |
| 920 | |
| 921 def test_faking_ruby_delete(self): | |
| 922 UploadInstance(_REMOTE, 'Knee/T1/IM-0001-0001.dcm') | |
| 923 UploadInstance(_REMOTE, 'Brainix/Flair/IM-0001-0001.dcm') | |
| 924 self.assertEqual(2, len(DoGet(_REMOTE, '/patients'))) | |
| 925 a = DoGet(_REMOTE, '/patients')[0] | |
| 926 b = DoGet(_REMOTE, '/patients')[1] | |
| 927 DoGet(_REMOTE, '/patients/%s' % a, data = { '_method' : 'DELETE' }) | |
| 928 self.assertEqual(1, len(DoGet(_REMOTE, '/patients'))) | |
| 929 DoGet(_REMOTE, '/patients/%s' % b, data = { '_method' : 'DELETE' }) | |
| 930 self.assertEqual(0, len(DoGet(_REMOTE, '/patients'))) | |
| 931 | |
| 932 | |
| 933 def test_faking_google_put(self): | |
| 934 UploadInstance(_REMOTE, 'Knee/T1/IM-0001-0001.dcm') | |
| 935 UploadInstance(_REMOTE, 'Brainix/Flair/IM-0001-0001.dcm') | |
| 936 self.assertEqual(2, len(DoGet(_REMOTE, '/patients'))) | |
| 937 a = DoGet(_REMOTE, '/patients')[0] | |
| 938 b = DoGet(_REMOTE, '/patients')[1] | |
| 939 self.assertEqual(0, DoGet(_REMOTE, '/patients/%s/protected' % a)) | |
| 940 DoPost(_REMOTE, '/patients/%s/protected' % a, headers = { 'X-HTTP-Method-Override' : 'PUT' }, data = '0') | |
| 941 self.assertEqual(0, DoGet(_REMOTE, '/patients/%s/protected' % a)) | |
| 942 DoPost(_REMOTE, '/patients/%s/protected' % a, headers = { 'X-HTTP-Method-Override' : 'PUT' }, data = '1') | |
| 943 self.assertEqual(1, DoGet(_REMOTE, '/patients/%s/protected' % a)) | |
| 944 DoPost(_REMOTE, '/patients/%s/protected' % a, headers = { 'X-HTTP-Method-Override' : 'PUT' }, data = '0') | |
| 945 self.assertEqual(0, DoGet(_REMOTE, '/patients/%s/protected' % a)) | |
| 946 | |
| 947 | |
| 948 def test_faking_google_delete(self): | |
| 949 UploadInstance(_REMOTE, 'Knee/T1/IM-0001-0001.dcm') | |
| 950 UploadInstance(_REMOTE, 'Brainix/Flair/IM-0001-0001.dcm') | |
| 951 self.assertEqual(2, len(DoGet(_REMOTE, '/patients'))) | |
| 952 a = DoGet(_REMOTE, '/patients')[0] | |
| 953 b = DoGet(_REMOTE, '/patients')[1] | |
| 954 DoPost(_REMOTE, '/patients/%s' % a, headers = { 'X-HTTP-Method-Override' : 'DELETE' }) | |
| 955 self.assertEqual(1, len(DoGet(_REMOTE, '/patients'))) | |
| 956 DoPost(_REMOTE, '/patients/%s' % b, headers = { 'X-HTTP-Method-Override' : 'DELETE' }) | |
| 957 self.assertEqual(0, len(DoGet(_REMOTE, '/patients'))) | |
| 958 | |
| 959 | |
| 960 def test_lua(self): | |
| 961 self.assertEqual(42, DoPost(_REMOTE, '/tools/execute-script', 'print(42)')) | |
| 962 self.assertTrue(IsDefinedInLua(_REMOTE, 'PrintRecursive')) | |
| 963 self.assertFalse(IsDefinedInLua(_REMOTE, 'HelloWorld')) | |
| 964 | |
| 965 | |
| 966 def test_metadata(self): | |
| 967 UploadInstance(_REMOTE, 'Knee/T1/IM-0001-0001.dcm') | |
| 968 p = DoGet(_REMOTE, '/patients')[0] | |
| 969 i = DoGet(_REMOTE, '/instances')[0] | |
| 970 | |
| 971 m = DoGet(_REMOTE, '/patients/%s/metadata' % p) | |
| 972 self.assertEqual(1, len(m)) | |
| 973 self.assertEqual('LastUpdate', m[0]) | |
| 974 | |
| 975 m = DoGet(_REMOTE, '/instances/%s/metadata' % i) | |
| 145 | 976 self.assertEqual(8, len(m)) |
| 12 | 977 self.assertTrue('IndexInSeries' in m) |
| 978 self.assertTrue('ReceptionDate' in m) | |
| 979 self.assertTrue('RemoteAET' in m) | |
|
63
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test Origin metadata of instances
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diff
changeset
|
980 self.assertTrue('Origin' in m) |
|
89
74b7b9aed5f8
test TransferSyntax metadata
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parents:
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diff
changeset
|
981 self.assertTrue('TransferSyntax' in m) |
|
95
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testing of metadata SopClassUid
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
changeset
|
982 self.assertTrue('SopClassUid' in m) |
| 145 | 983 self.assertTrue('RemoteIP' in m) |
| 984 self.assertTrue('HttpUsername' in m) | |
|
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test Origin metadata of instances
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parents:
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diff
changeset
|
985 self.assertEqual(DoGet(_REMOTE, '/instances/%s/metadata/IndexInSeries' % i), 1) |
|
2652d562267a
test Origin metadata of instances
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parents:
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diff
changeset
|
986 self.assertEqual(DoGet(_REMOTE, '/instances/%s/metadata/Origin' % i), 'RestApi') |
|
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test Origin metadata of instances
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parents:
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diff
changeset
|
987 self.assertEqual(DoGet(_REMOTE, '/instances/%s/metadata/RemoteAET' % i), '') # None, received by REST API |
|
89
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test TransferSyntax metadata
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parents:
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diff
changeset
|
988 self.assertEqual(DoGet(_REMOTE, '/instances/%s/metadata/TransferSyntax' % i), '1.2.840.10008.1.2.4.91') # JPEG2k |
|
95
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testing of metadata SopClassUid
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parents:
92
diff
changeset
|
989 self.assertEqual(DoGet(_REMOTE, '/instances/%s/metadata/SopClassUid' % i), '1.2.840.10008.5.1.4.1.1.4') |
| 12 | 990 |
| 991 # Play with custom metadata | |
| 992 DoPut(_REMOTE, '/patients/%s/metadata/5555' % p, 'coucou') | |
| 993 m = DoGet(_REMOTE, '/patients/%s/metadata' % p) | |
| 994 self.assertEqual(2, len(m)) | |
| 995 self.assertTrue('LastUpdate' in m) | |
| 996 self.assertTrue('5555' in m) | |
| 997 self.assertEqual('coucou', DoGet(_REMOTE, '/patients/%s/metadata/5555' % p)) | |
| 998 DoPut(_REMOTE, '/patients/%s/metadata/5555' % p, 'hello') | |
| 999 self.assertEqual('hello', DoGet(_REMOTE, '/patients/%s/metadata/5555' % p)) | |
| 1000 DoDelete(_REMOTE, '/patients/%s/metadata/5555' % p) | |
| 1001 m = DoGet(_REMOTE, '/patients/%s/metadata' % p) | |
| 1002 self.assertEqual(1, len(m)) | |
| 1003 self.assertTrue('LastUpdate' in m) | |
| 13 | 1004 |
| 1005 | |
| 1006 def test_statistics(self): | |
| 1007 # Upload 16 instances | |
| 1008 for i in range(4): | |
| 1009 UploadInstance(_REMOTE, 'Brainix/Flair/IM-0001-000%d.dcm' % (i + 1)) | |
| 1010 UploadInstance(_REMOTE, 'Brainix/Epi/IM-0001-000%d.dcm' % (i + 1)) | |
| 1011 UploadInstance(_REMOTE, 'Knee/T1/IM-0001-000%d.dcm' % (i + 1)) | |
| 1012 UploadInstance(_REMOTE, 'Knee/T2/IM-0001-000%d.dcm' % (i + 1)) | |
| 1013 | |
| 1014 s = DoGet(_REMOTE, '/statistics') | |
| 1015 self.assertEqual(16, s['CountInstances']) | |
| 1016 self.assertEqual(2, s['CountPatients']) | |
| 1017 self.assertEqual(2, s['CountStudies']) | |
| 1018 self.assertEqual(4, s['CountSeries']) | |
| 1019 d = int(s['TotalUncompressedSize']) | |
| 1020 | |
| 1021 e = 0 | |
| 1022 for patient in DoGet(_REMOTE, '/patients'): | |
| 1023 s = DoGet(_REMOTE, '/patients/%s/statistics' % patient) | |
| 1024 self.assertEqual(8, s['CountInstances']) | |
| 1025 self.assertEqual(1, s['CountStudies']) | |
| 1026 self.assertEqual(2, s['CountSeries']) | |
| 1027 e += int(s['UncompressedSize']) | |
| 1028 | |
| 1029 for study in DoGet(_REMOTE, '/studies'): | |
| 1030 s = DoGet(_REMOTE, '/studies/%s/statistics' % study) | |
| 1031 self.assertEqual(8, s['CountInstances']) | |
| 1032 self.assertEqual(2, s['CountSeries']) | |
| 1033 e += int(s['UncompressedSize']) | |
| 1034 | |
| 1035 for series in DoGet(_REMOTE, '/series'): | |
| 1036 s = DoGet(_REMOTE, '/series/%s/statistics' % series) | |
| 1037 self.assertEqual(4, s['CountInstances']) | |
| 1038 e += int(s['UncompressedSize']) | |
| 1039 | |
| 1040 self.assertEqual(3 * d, e) | |
| 1041 | |
| 1042 | |
| 1043 def test_custom_attachment(self): | |
| 1044 UploadInstance(_REMOTE, 'Brainix/Flair/IM-0001-0001.dcm') | |
| 1045 patient = DoGet(_REMOTE, '/patients')[0] | |
| 1046 instance = DoGet(_REMOTE, '/instances')[0] | |
| 1047 size = int(DoGet(_REMOTE, '/patients/%s/statistics' % patient)['DiskSize']) | |
| 1048 self.assertEqual(size, int(DoGet(_REMOTE, '/statistics')['TotalDiskSize'])) | |
| 1049 | |
| 1050 self.assertEqual(0, len(DoGet(_REMOTE, '/patients/%s/attachments' % patient))) | |
| 1051 self.assertEqual(2, len(DoGet(_REMOTE, '/instances/%s/attachments' % instance))) | |
| 1052 self.assertTrue('dicom' in DoGet(_REMOTE, '/instances/%s/attachments' % instance)) | |
| 1053 self.assertTrue('dicom-as-json' in DoGet(_REMOTE, '/instances/%s/attachments' % instance)) | |
| 1054 | |
| 1055 self.assertRaises(Exception, lambda: DoPut(_REMOTE, '/patients/%s/attachments/22' % patient, 'hello')) | |
| 1056 hello = 'hellohellohellohellohellohellohellohellohello' | |
| 1057 DoPut(_REMOTE, '/patients/%s/attachments/1025' % patient, hello) | |
| 1058 self.assertEqual(int(DoGet(_REMOTE, '/patients/%s/statistics' % patient)['DiskSize']), | |
| 1059 int(DoGet(_REMOTE, '/statistics')['TotalDiskSize'])) | |
| 1060 self.assertEqual(int(DoGet(_REMOTE, '/patients/%s/statistics' % patient)['DiskSize']), | |
| 1061 size + int(DoGet(_REMOTE, '/patients/%s/attachments/1025/compressed-size' % patient))) | |
| 1062 | |
| 1063 DoPut(_REMOTE, '/patients/%s/attachments/1026' % patient, 'world') | |
| 1064 self.assertEqual(int(DoGet(_REMOTE, '/patients/%s/statistics' % patient)['DiskSize']), | |
| 1065 int(DoGet(_REMOTE, '/statistics')['TotalDiskSize'])) | |
| 1066 self.assertEqual(int(DoGet(_REMOTE, '/patients/%s/statistics' % patient)['DiskSize']), | |
| 1067 size + | |
| 1068 int(DoGet(_REMOTE, '/patients/%s/attachments/1025/compressed-size' % patient)) + | |
| 1069 int(DoGet(_REMOTE, '/patients/%s/attachments/1026/compressed-size' % patient))) | |
| 1070 | |
| 1071 self.assertEqual(2, len(DoGet(_REMOTE, '/patients/%s/attachments' % patient))) | |
| 1072 self.assertEqual(hello, DoGet(_REMOTE, '/patients/%s/attachments/1025/data' % patient)) | |
| 1073 self.assertEqual('world', DoGet(_REMOTE, '/patients/%s/attachments/1026/data' % patient)) | |
| 1074 DoPost(_REMOTE, '/patients/%s/attachments/1025/verify-md5' % patient) | |
| 1075 DoPost(_REMOTE, '/patients/%s/attachments/1026/verify-md5' % patient) | |
| 1076 DoPut(_REMOTE, '/patients/%s/attachments/1026' % patient, 'world2') | |
| 1077 self.assertEqual('world2', DoGet(_REMOTE, '/patients/%s/attachments/1026/data' % patient)) | |
| 1078 | |
| 1079 self.assertRaises(Exception, lambda: DoDelete(_REMOTE, '/instances/%s/attachments/dicom' % instance)) | |
| 1080 DoDelete(_REMOTE, '/patients/%s/attachments/1025' % patient) | |
| 1081 self.assertEqual(int(DoGet(_REMOTE, '/patients/%s/statistics' % patient)['DiskSize']), | |
| 1082 int(DoGet(_REMOTE, '/statistics')['TotalDiskSize'])) | |
| 1083 self.assertEqual(int(DoGet(_REMOTE, '/patients/%s/statistics' % patient)['DiskSize']), | |
| 1084 size + int(DoGet(_REMOTE, '/patients/%s/attachments/1026/compressed-size' % patient))) | |
| 1085 | |
| 1086 self.assertEqual(1, len(DoGet(_REMOTE, '/patients/%s/attachments' % patient))) | |
| 1087 DoDelete(_REMOTE, '/patients/%s/attachments/1026' % patient) | |
| 1088 self.assertEqual(0, len(DoGet(_REMOTE, '/patients/%s/attachments' % patient))) | |
| 1089 | |
| 1090 self.assertEqual(int(DoGet(_REMOTE, '/patients/%s/statistics' % patient)['DiskSize']), size) | |
| 1091 self.assertEqual(size, int(DoGet(_REMOTE, '/statistics')['TotalDiskSize'])) | |
| 1092 | |
| 1093 | |
| 1094 def test_incoming_storescu(self): | |
| 1095 self.assertEqual(0, len(DoGet(_REMOTE, '/patients'))) | |
| 45 | 1096 subprocess.check_call([ FindExecutable('storescu'), |
|
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1097 _REMOTE['Server'], str(_REMOTE['DicomPort']), |
| 13 | 1098 GetDatabasePath('ColorTestImageJ.dcm') ]) |
| 1099 self.assertEqual(1, len(DoGet(_REMOTE, '/patients'))) | |
| 1100 | |
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1101 i = DoGet(_REMOTE, '/instances') |
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1102 self.assertEqual(1, len(i)) |
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1103 m = DoGet(_REMOTE, '/instances/%s/metadata' % i[0]) |
| 145 | 1104 self.assertEqual(8, len(m)) |
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1105 self.assertTrue('IndexInSeries' in m) |
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1106 self.assertTrue('ReceptionDate' in m) |
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1107 self.assertTrue('RemoteAET' in m) |
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1108 self.assertTrue('Origin' in m) |
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1109 self.assertTrue('TransferSyntax' in m) |
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1110 self.assertTrue('SopClassUid' in m) |
| 145 | 1111 self.assertTrue('RemoteIP' in m) |
| 1112 self.assertTrue('CalledAET' in m) | |
|
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1113 self.assertEqual(DoGet(_REMOTE, '/instances/%s/metadata/IndexInSeries' % i[0]), 1) |
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1114 self.assertEqual(DoGet(_REMOTE, '/instances/%s/metadata/Origin' % i[0]), 'DicomProtocol') |
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1115 self.assertEqual(DoGet(_REMOTE, '/instances/%s/metadata/RemoteAET' % i[0]), 'STORESCU') |
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1116 self.assertEqual(DoGet(_REMOTE, '/instances/%s/metadata/TransferSyntax' % i[0]), '1.2.840.10008.1.2.1') |
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1117 self.assertEqual(DoGet(_REMOTE, '/instances/%s/metadata/SopClassUid' % i[0]), '1.2.840.10008.5.1.4.1.1.7') |
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1118 |
| 13 | 1119 |
| 1120 def test_incoming_findscu(self): | |
| 1121 UploadInstance(_REMOTE, 'Multiframe.dcm') | |
| 1122 UploadInstance(_REMOTE, 'ColorTestImageJ.dcm') | |
| 1123 | |
| 1124 i = CallFindScu([ '-k', '0008,0052=PATIENT', '-k', '0010,0010' ]) | |
| 1125 patientNames = re.findall('\(0010,0010\).*?\[(.*?)\]', i) | |
| 1126 self.assertEqual(2, len(patientNames)) | |
| 1127 self.assertTrue('Test Patient BG ' in patientNames) | |
| 1128 self.assertTrue('Anonymized' in patientNames) | |
| 1129 | |
| 1130 i = CallFindScu([ '-k', '0008,0052=SERIES', '-k', '0008,0021' ]) | |
| 1131 series = re.findall('\(0008,0021\).*?\[\s*(.*?)\s*\]', i) | |
| 1132 self.assertEqual(2, len(series)) | |
| 1133 self.assertTrue('20070208' in series) | |
| 1134 self.assertTrue('19980312' in series) | |
| 1135 | |
|
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1136 i = CallFindScu([ '-k', '0008,0052=SERIES', '-k', '0008,0021', '-k', 'ModalitiesInStudy=MR\\XA' ]) |
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1137 series = re.findall('\(0008,0021\).*?\[\s*(.*?)\s*\]', i) |
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1138 self.assertEqual(1, len(series)) |
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1139 self.assertTrue('19980312' in series) |
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1140 |
| 13 | 1141 i = CallFindScu([ '-k', '0008,0052=SERIES', '-k', 'PatientName=Anonymized' ]) |
| 1142 series = re.findall('\(0010,0010\).*?\[\s*(.*?)\s*\]', i) | |
| 1143 self.assertEqual(1, len(series)) | |
| 1144 | |
| 1145 # Test the "CaseSentitivePN" flag (false by default) | |
| 1146 i = CallFindScu([ '-k', '0008,0052=SERIES', '-k', 'PatientName=anonymized' ]) | |
| 1147 series = re.findall('\(0010,0010\).*?\[\s*(.*?)\s*\]', i) | |
| 1148 self.assertEqual(1, len(series)) | |
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1149 |
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1150 # Test returning sequence values (only since Orthanc 0.9.5) |
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1151 i = CallFindScu([ '-k', '0008,0052=SERIES', '-k', '0008,2112' ]) # "ColorTestImageJ" has this sequence tag |
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1152 sequences = re.findall('\(0008,2112\)', i) |
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1153 self.assertEqual(1, len(sequences)) |
| 70 | 1154 |
| 1155 # Test range search (buggy if Orthanc <= 0.9.6) | |
| 1156 i = CallFindScu([ '-k', '0008,0052=STUDY', '-k', 'StudyDate=19980312-' ]) | |
| 1157 studies = re.findall('\(0008,0020\).*?\[\s*(.*?)\s*\]', i) | |
| 1158 self.assertEqual(2, len(studies)) | |
| 1159 self.assertTrue('20070208' in studies) | |
| 1160 self.assertTrue('19980312' in studies) | |
| 1161 i = CallFindScu([ '-k', '0008,0052=STUDY', '-k', 'StudyDate=19980312-19980312' ]) | |
| 1162 studies = re.findall('\(0008,0020\).*?\[\s*(.*?)\s*\]', i) | |
| 1163 self.assertEqual(1, len(studies)) | |
| 1164 self.assertTrue('19980312' in studies) | |
| 1165 i = CallFindScu([ '-k', '0008,0052=STUDY', '-k', 'StudyDate=-19980312' ]) | |
| 1166 studies = re.findall('\(0008,0020\).*?\[\s*(.*?)\s*\]', i) | |
| 1167 self.assertEqual(1, len(studies)) | |
| 1168 self.assertTrue('19980312' in studies) | |
| 13 | 1169 |
| 1170 | |
| 1171 def test_incoming_movescu(self): | |
| 1172 UploadInstance(_REMOTE, 'Multiframe.dcm') | |
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1173 |
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1174 # No matching patient, so no job is created |
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1175 self.assertEqual(0, len(DoGet(_LOCAL, '/patients'))) |
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1176 CallMoveScu([ '--patient', '-k', '0008,0052=PATIENT', '-k', 'PatientID=none' ]) |
| 13 | 1177 self.assertEqual(0, len(DoGet(_LOCAL, '/patients'))) |
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1178 |
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1179 # 1 Matching patient, track the job |
| 138 | 1180 self.assertTrue(MonitorJob(_REMOTE, lambda: CallMoveScu([ |
| 1181 '--patient', | |
| 1182 '-k', '0008,0052=PATIENT', | |
| 1183 '-k', 'PatientID=12345678' | |
| 1184 ]))) | |
| 13 | 1185 self.assertEqual(1, len(DoGet(_LOCAL, '/patients'))) |
| 1186 | |
| 1187 | |
| 1188 def test_findscu(self): | |
| 1189 i = UploadInstance(_REMOTE, 'DummyCT.dcm')['ID'] | |
| 1190 j = UploadInstance(_REMOTE, 'Issue22.dcm')['ID'] | |
| 1191 k = UploadInstance(_REMOTE, 'ColorTestImageJ.dcm')['ID'] | |
| 1192 DoPost(_REMOTE, '/modalities/orthanctest/store', str(i), 'text/plain') | |
| 1193 | |
| 1194 # Test the "find-patient" level | |
| 1195 p = DoPost(_REMOTE, '/modalities/orthanctest/find-patient', { }) | |
| 1196 self.assertEqual(1, len(p)) | |
| 1197 self.assertEqual('ozp00SjY2xG', p[0]['PatientID']) | |
| 1198 | |
| 1199 # Test wildcards constraints. The "LO" value representation | |
| 1200 # for PatientID is always case-sensitive, but the "PN" for | |
| 1201 # PatientName might depend on the implementation: | |
| 1202 # "GenerateConfigurationForTests.py" will force it to be case | |
| 1203 # insensitive (which was the default until Orthanc 0.8.6). | |
| 1204 p = DoPost(_REMOTE, '/modalities/orthanctest/find-patient', { 'PatientName' : 'K*' }) | |
| 1205 self.assertEqual(1, len(p)) | |
| 1206 | |
| 1207 p = DoPost(_REMOTE, '/modalities/orthanctest/find-patient', { 'PatientName' : 'k*' }) | |
| 1208 self.assertEqual(1, len(p)) | |
| 1209 | |
| 1210 p = DoPost(_REMOTE, '/modalities/orthanctest/find-patient', { 'PatientID' : 'ozp*' }) | |
| 1211 self.assertEqual(1, len(p)) | |
| 1212 | |
| 1213 p = DoPost(_REMOTE, '/modalities/orthanctest/find-patient', { 'PatientID' : 'o?p*' }) | |
| 1214 self.assertEqual(1, len(p)) | |
| 1215 | |
| 1216 p = DoPost(_REMOTE, '/modalities/orthanctest/find-patient', { 'PatientID' : '0?q*' }) | |
| 1217 self.assertEqual(0, len(p)) | |
| 1218 | |
| 1219 p = DoPost(_REMOTE, '/modalities/orthanctest/find-patient', { 'PatientName' : 'B*' }) | |
| 1220 self.assertEqual(0, len(p)) | |
| 1221 | |
| 1222 p = DoPost(_REMOTE, '/modalities/orthanctest/find-patient', { 'PatientName' : 'b*' }) | |
| 1223 self.assertEqual(0, len(p)) | |
| 1224 | |
| 1225 DoPost(_REMOTE, '/modalities/orthanctest/store', str(j), 'text/plain') | |
| 1226 DoPost(_REMOTE, '/modalities/orthanctest/store', str(k), 'text/plain') | |
| 1227 DoPost(_REMOTE, '/modalities/orthanctest/find-patient', { }) | |
| 1228 self.assertEqual(3, len(DoPost(_REMOTE, '/modalities/orthanctest/find-patient', { }))) | |
| 1229 | |
| 1230 p = DoPost(_REMOTE, '/modalities/orthanctest/find-patient', { 'PatientName' : 'A*' }) | |
| 1231 self.assertEqual(2, len(p)) | |
| 1232 | |
| 1233 # Test the "find-study" level. This is the instance "ColorTestImageJ.dcm" | |
| 1234 s = DoPost(_REMOTE, '/modalities/orthanctest/find-study', { 'PatientID' : 'B9uTHKOZ' }) | |
| 1235 self.assertEqual(1, len(s)) | |
| 1236 self.assertEqual('20070208', s[0]['StudyDate']) | |
| 1237 | |
| 1238 # Test range searches | |
| 1239 t = DoPost(_REMOTE, '/modalities/orthanctest/find-study', { 'PatientID' : 'B9uTHKOZ', | |
| 1240 'StudyDate' : '-20070101' }) | |
| 1241 self.assertEqual(0, len(t)) | |
| 1242 | |
| 1243 t = DoPost(_REMOTE, '/modalities/orthanctest/find-study', { 'PatientID' : 'B9uTHKOZ', | |
| 1244 'StudyDate' : '20090101-' }) | |
| 1245 self.assertEqual(0, len(t)) | |
| 1246 | |
| 1247 t = DoPost(_REMOTE, '/modalities/orthanctest/find-study', { 'PatientID' : 'B9uTHKOZ', | |
| 1248 'StudyDate' : '20070101-' }) | |
| 1249 self.assertEqual(1, len(t)) | |
| 1250 | |
| 1251 t = DoPost(_REMOTE, '/modalities/orthanctest/find-study', { 'PatientID' : 'B9uTHKOZ', | |
| 1252 'StudyDate' : '-20090101' }) | |
| 1253 self.assertEqual(1, len(t)) | |
| 1254 | |
| 1255 t = DoPost(_REMOTE, '/modalities/orthanctest/find-study', { 'PatientID' : 'B9uTHKOZ', | |
| 1256 'StudyDate' : '20070207-20070207' }) | |
| 1257 self.assertEqual(0, len(t)) | |
| 1258 | |
| 1259 t = DoPost(_REMOTE, '/modalities/orthanctest/find-study', { 'PatientID' : 'B9uTHKOZ', | |
| 1260 'StudyDate' : '20070208-20070208' }) | |
| 1261 self.assertEqual(1, len(t)) | |
| 1262 | |
| 1263 t = DoPost(_REMOTE, '/modalities/orthanctest/find-study', { 'PatientID' : 'B9uTHKOZ', | |
| 1264 'StudyDate' : '20070209-20070209' }) | |
| 1265 self.assertEqual(0, len(t)) | |
| 1266 | |
| 1267 # Test the ModalitiesInStudy tag | |
| 1268 t = DoPost(_REMOTE, '/modalities/orthanctest/find-study', { | |
| 1269 'PatientID' : 'B9uTHKOZ', | |
| 1270 'ModalitiesInStudy' : 'US' }) | |
| 1271 self.assertEqual(0, len(t)) | |
| 1272 | |
| 1273 t = DoPost(_REMOTE, '/modalities/orthanctest/find-study', { | |
| 1274 'PatientID' : 'B9uTHKOZ', | |
| 1275 'ModalitiesInStudy' : 'CT' }) | |
| 1276 self.assertEqual(1, len(t)) | |
| 1277 | |
| 1278 t = DoPost(_REMOTE, '/modalities/orthanctest/find-study', { | |
| 1279 'PatientID' : 'B9uTHKOZ', | |
| 1280 'ModalitiesInStudy' : 'US\\CT' }) | |
| 1281 self.assertEqual(1, len(t)) | |
| 1282 | |
| 1283 # Test the "find-series" level | |
| 1284 t = DoPost(_REMOTE, '/modalities/orthanctest/find-series', { | |
| 1285 'PatientID' : 'B9uTHKOZ', | |
| 1286 'StudyInstanceUID' : s[0]['StudyInstanceUID'] }) | |
| 1287 self.assertEqual(1, len(t)) | |
| 1288 | |
| 1289 # Test "\" separator | |
| 1290 t = DoPost(_REMOTE, '/modalities/orthanctest/find-series', { | |
| 1291 'PatientID' : 'B9uTHKOZ', | |
| 1292 'StudyInstanceUID' : s[0]['StudyInstanceUID'], | |
| 1293 'Modality' : 'MR\\CT\\US' }) | |
| 1294 self.assertEqual(1, len(t)) | |
| 1295 | |
| 1296 t = DoPost(_REMOTE, '/modalities/orthanctest/find-series', { | |
| 1297 'PatientID' : 'B9uTHKOZ', | |
| 1298 'StudyInstanceUID' : s[0]['StudyInstanceUID'], | |
| 1299 'Modality' : 'MR\\US' }) | |
| 1300 self.assertEqual(0, len(t)) | |
| 1301 | |
| 1302 | |
| 1303 def test_update_modalities(self): | |
| 1304 try: | |
| 1305 DoDelete(_REMOTE, '/modalities/toto') | |
| 1306 except: | |
| 1307 pass | |
| 1308 try: | |
| 1309 DoDelete(_REMOTE, '/modalities/tata') | |
| 1310 except: | |
| 1311 pass | |
| 1312 self.assertRaises(Exception, lambda: DoGet(_REMOTE, '/modalities/toto')) | |
| 1313 DoPut(_REMOTE, '/modalities/toto', [ "STORESCP", "localhost", 2000 ]) | |
| 116 | 1314 DoPut(_REMOTE, '/modalities/tata', [ "STORESCP", "localhost", 2000, 'MedInria' ]) # check backward compatiblity with obsolete manufacturer |
| 1315 DoDelete(_REMOTE, '/modalities/tata') | |
| 124 | 1316 DoPut(_REMOTE, '/modalities/tata', [ "STORESCP", "localhost", 2000, 'GenericNoUniversalWildcard' ]) |
|
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1317 DoDelete(_REMOTE, '/modalities/tata') |
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1318 DoPut(_REMOTE, '/modalities/tata', [ "STORESCP", "localhost", 2000, 'GenericNoWildcardInDates' ]) |
| 128 | 1319 modalitiesReadback = DoGet(_REMOTE, '/modalities?expand') |
| 1320 self.assertEqual([ "STORESCP", "localhost", 2000, 'GenericNoWildcardInDates' ], modalitiesReadback['tata']) | |
| 116 | 1321 self.assertRaises(Exception, lambda: DoPut(_REMOTE, '/modalities/toto', [ "STORESCP", "localhost", 2000, 'InvalidManufacturerName' ])) |
| 13 | 1322 self.assertTrue('store' in DoGet(_REMOTE, '/modalities/toto')) |
| 1323 self.assertTrue('store' in DoGet(_REMOTE, '/modalities/tata')) | |
| 1324 DoDelete(_REMOTE, '/modalities/toto') | |
| 1325 DoDelete(_REMOTE, '/modalities/tata') | |
| 1326 self.assertRaises(Exception, lambda: DoGet(_REMOTE, '/modalities/toto')) | |
| 1327 self.assertRaises(Exception, lambda: DoGet(_REMOTE, '/modalities/tata')) | |
| 1328 | |
| 1329 | |
| 1330 def test_update_peers(self): | |
| 1331 # curl -X PUT http://localhost:8042/peers/toto -d '["http://localhost:8042/"]' -v | |
| 1332 try: | |
| 1333 DoDelete(_REMOTE, '/peers/toto') | |
| 1334 except: | |
| 1335 pass | |
| 1336 try: | |
| 1337 DoDelete(_REMOTE, '/peers/tata') | |
| 1338 except: | |
| 1339 pass | |
| 1340 self.assertRaises(Exception, lambda: DoGet(_REMOTE, '/peers/toto')) | |
| 1341 DoPut(_REMOTE, '/peers/toto', [ 'http://localhost:8042/' ]) | |
| 1342 DoPut(_REMOTE, '/peers/tata', [ 'http://localhost:8042/', 'user', 'pass' ]) | |
| 128 | 1343 self.assertTrue('tata' in DoGet(_REMOTE, '/peers')) |
| 1344 peersReadback = DoGet(_REMOTE, '/peers?expand') | |
| 1345 self.assertEqual('http://localhost:8042/', peersReadback['tata']['Url']) | |
| 1346 self.assertEqual('user', peersReadback['tata']['Username']) | |
| 1347 self.assertFalse('Password' in peersReadback['tata']) # make sure no sensitive data is included | |
| 1348 self.assertFalse('CertificateFile' in peersReadback['tata']) # make sure no sensitive data is included | |
| 1349 self.assertFalse('CertificateKeyFile' in peersReadback['tata']) # make sure no sensitive data is included | |
| 1350 self.assertFalse('CertificateKeyPassword' in peersReadback['tata']) # make sure no sensitive data is included | |
| 1351 self.assertFalse('Pkcs11' in peersReadback['tata']) # make sure no sensitive data is included | |
| 13 | 1352 self.assertRaises(Exception, lambda: DoPut(_REMOTE, '/peers/toto', [ 'http://localhost:8042/', 'a' ])) |
| 1353 self.assertRaises(Exception, lambda: DoPut(_REMOTE, '/peers/toto', [ 'http://localhost:8042/', 'a', 'b', 'c' ])) | |
| 1354 self.assertTrue('store' in DoGet(_REMOTE, '/peers/toto')) | |
| 1355 self.assertTrue('store' in DoGet(_REMOTE, '/peers/tata')) | |
| 1356 DoDelete(_REMOTE, '/peers/toto') | |
| 1357 DoDelete(_REMOTE, '/peers/tata') | |
| 1358 self.assertRaises(Exception, lambda: DoGet(_REMOTE, '/peers/toto')) | |
| 1359 self.assertRaises(Exception, lambda: DoGet(_REMOTE, '/peers/tata')) | |
| 1360 | |
| 1361 | |
| 1362 def test_mesterhazy_modification(self): | |
| 1363 # When I modify a series ( eg. curl | |
| 1364 # http://localhost:8042/series/uidhere/modify -X POST -d | |
| 1365 # '{"Replace":{"SeriesDate":"19990101"}}' ) the modified | |
| 1366 # series is added to a new Study, instead of the existing | |
| 1367 # Study. Fixed in Orthanc 0.7.5 | |
| 1368 | |
| 1369 u = UploadInstance(_REMOTE, 'DummyCT.dcm') | |
| 1370 study = 'b9c08539-26f93bde-c81ab0d7-bffaf2cb-a4d0bdd0' | |
| 1371 series = 'f2635388-f01d497a-15f7c06b-ad7dba06-c4c599fe' | |
| 1372 | |
| 1373 modified = DoPost(_REMOTE, '/series/%s/modify' % series, | |
| 1374 json.dumps({ "Replace" : { "SeriesDate" : "19990101" }})) | |
| 1375 | |
| 1376 self.assertEqual(study, DoGet(_REMOTE, '/series/%s' % modified['ID']) ['ParentStudy']) | |
| 1377 | |
| 1378 | |
| 1379 def test_create(self): | |
| 1380 i = DoPost(_REMOTE, '/tools/create-dicom', | |
| 1381 json.dumps({ | |
| 1382 'PatientName' : 'Jodogne', | |
| 1383 'Modality' : 'CT', | |
| 58 | 1384 'SOPClassUID' : '1.2.840.10008.5.1.4.1.1.1', |
| 13 | 1385 'PixelData' : 'data:image/png;base64,iVBORw0KGgoAAAANSUhEUgAAAAUAAAAFCAYAAACNbyblAAAAHElEQVQI12P4//8/w38GIAXDIBKE0DHxgljNBAAO9TXL0Y4OHwAAAABJRU5ErkJggg==' # red dot in RGBA |
| 1386 })) | |
| 1387 | |
| 1388 self.assertEqual('Jodogne', DoGet(_REMOTE, '/instances/%s/content/PatientName' % i['ID']).strip()) | |
| 1389 self.assertEqual('CT', DoGet(_REMOTE, '/instances/%s/content/Modality' % i['ID']).strip()) | |
| 1390 | |
| 1391 png = GetImage(_REMOTE, '/instances/%s/preview' % i['ID']) | |
| 1392 self.assertEqual((5, 5), png.size) | |
| 1393 | |
| 38 | 1394 j = DoGet(_REMOTE, i['Path']) |
| 1395 self.assertEqual('Instance', j['Type']) | |
| 1396 self.assertEqual(j['ID'], i['ID']) | |
| 1397 | |
| 13 | 1398 |
| 1399 def test_pilates(self): | |
| 1400 # "SCU failed error when accessing orthanc with osirix" by | |
| 1401 # Pilates Agentur (Mar 10, 2014 at 9:33 PM) | |
| 1402 i = UploadInstance(_REMOTE, 'PilatesArgenturGEUltrasoundOsiriX.dcm')['ID'] | |
| 1403 self.assertEqual(0, len(DoGet(_LOCAL, '/patients'))) | |
| 1404 j = DoPost(_REMOTE, '/modalities/orthanctest/store', str(i), 'text/plain') | |
| 1405 self.assertEqual(1, len(DoGet(_LOCAL, '/patients'))) | |
| 1406 | |
| 1407 | |
| 1408 def test_shared_tags(self): | |
| 1409 a = UploadInstance(_REMOTE, 'Knee/T1/IM-0001-0001.dcm')['ID'] | |
| 1410 b = UploadInstance(_REMOTE, 'Knee/T1/IM-0001-0002.dcm')['ID'] | |
| 1411 p = DoGet(_REMOTE, '/patients')[0] | |
| 1412 | |
| 1413 self.assertTrue('0010,0010' in DoGet(_REMOTE, '/patients/%s/shared-tags' % p)) | |
| 1414 self.assertTrue('PatientName' in DoGet(_REMOTE, '/patients/%s/shared-tags?simplify' % p)) | |
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1415 self.assertTrue('0010,0010' in DoGet(_REMOTE, '/patients/%s/shared-tags?short' % p)) |
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1416 |
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1417 self.assertEqual('KNEE', DoGet(_REMOTE, '/patients/%s/shared-tags' % p)['0010,0010']['Value']) |
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1418 self.assertEqual('KNEE', DoGet(_REMOTE, '/patients/%s/shared-tags?simplify' % p)['PatientName']) |
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1419 self.assertEqual('KNEE', DoGet(_REMOTE, '/patients/%s/shared-tags?short' % p)['0010,0010']) |
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1420 |
| 13 | 1421 self.assertTrue('0008,1030' in DoGet(_REMOTE, '/patients/%s/shared-tags' % p)) |
| 1422 self.assertTrue('StudyDescription' in DoGet(_REMOTE, '/patients/%s/shared-tags?simplify' % p)) | |
| 1423 self.assertTrue('0008,103e' in DoGet(_REMOTE, '/patients/%s/shared-tags' % p)) | |
| 1424 self.assertTrue('SeriesDescription' in DoGet(_REMOTE, '/patients/%s/shared-tags?simplify' % p)) | |
| 1425 self.assertFalse('0008,0018' in DoGet(_REMOTE, '/patients/%s/shared-tags' % p)) | |
| 1426 self.assertFalse('SOPInstanceUID' in DoGet(_REMOTE, '/patients/%s/shared-tags?simplify' % p)) | |
| 1427 | |
| 1428 self.assertTrue('0008,0018' in DoGet(_REMOTE, '/instances/%s/tags' % a)) | |
| 1429 self.assertTrue('SOPInstanceUID' in DoGet(_REMOTE, '/instances/%s/tags?simplify' % a)) | |
| 1430 | |
| 1431 | |
| 1432 def test_modules(self): | |
| 1433 a = UploadInstance(_REMOTE, 'Knee/T1/IM-0001-0001.dcm')['ID'] | |
| 1434 p = DoGet(_REMOTE, '/patients')[0] | |
| 1435 s = DoGet(_REMOTE, '/studies')[0] | |
| 1436 t = DoGet(_REMOTE, '/series')[0] | |
| 1437 | |
| 1438 self.assertTrue('0010,0010' in DoGet(_REMOTE, '/patients/%s/module' % p)) | |
| 1439 self.assertTrue('PatientName' in DoGet(_REMOTE, '/patients/%s/module?simplify' % p)) | |
| 1440 self.assertTrue('0010,0010' in DoGet(_REMOTE, '/studies/%s/module-patient' % p)) | |
| 1441 self.assertTrue('PatientName' in DoGet(_REMOTE, '/studies/%s/module-patient?simplify' % p)) | |
| 1442 self.assertTrue('0008,1030' in DoGet(_REMOTE, '/studies/%s/module' % s)) | |
| 1443 self.assertTrue('StudyDescription' in DoGet(_REMOTE, '/studies/%s/module?simplify' % s)) | |
| 1444 self.assertTrue('0008,103e' in DoGet(_REMOTE, '/series/%s/module' % p)) | |
| 1445 self.assertTrue('SeriesDescription' in DoGet(_REMOTE, '/series/%s/module?simplify' % p)) | |
| 1446 self.assertTrue('0008,0018' in DoGet(_REMOTE, '/instances/%s/module' % a)) | |
| 1447 self.assertTrue('SOPInstanceUID' in DoGet(_REMOTE, '/instances/%s/module?simplify' % a)) | |
| 1448 | |
| 1449 | |
| 1450 def test_auto_directory(self): | |
| 1451 a = UploadInstance(_REMOTE, 'Knee/T1/IM-0001-0001.dcm')['ID'] | |
| 1452 self.assertTrue('now' in DoGet(_REMOTE, '/tools')) | |
| 1453 self.assertTrue('dicom-conformance' in DoGet(_REMOTE, '/tools')) | |
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1454 self.assertTrue('invalidate-tags' in DoGet(_REMOTE, '/tools')) |
| 13 | 1455 self.assertTrue(len(DoGet(_REMOTE, '/tools/dicom-conformance')) > 1000) |
| 1456 self.assertTrue('orthanctest' in DoGet(_REMOTE, '/modalities')) | |
| 1457 self.assertTrue('echo' in DoGet(_REMOTE, '/modalities/orthanctest')) | |
| 1458 self.assertTrue('find' in DoGet(_REMOTE, '/modalities/orthanctest')) | |
| 1459 self.assertTrue('find-instance' in DoGet(_REMOTE, '/modalities/orthanctest')) | |
| 1460 self.assertTrue('find-patient' in DoGet(_REMOTE, '/modalities/orthanctest')) | |
| 1461 self.assertTrue('find-series' in DoGet(_REMOTE, '/modalities/orthanctest')) | |
| 1462 self.assertTrue('find-study' in DoGet(_REMOTE, '/modalities/orthanctest')) | |
| 1463 self.assertTrue('store' in DoGet(_REMOTE, '/modalities/orthanctest')) | |
| 1464 self.assertTrue('store' in DoGet(_REMOTE, '/peers/peer')) | |
| 1465 self.assertTrue('matlab' in DoGet(_REMOTE, '/instances/%s/frames/0' % a)) | |
| 79 | 1466 self.assertTrue('raw' in DoGet(_REMOTE, '/instances/%s/frames/0' % a)) |
| 13 | 1467 self.assertRaises(Exception, lambda: DoGet(_REMOTE, '/tools/nope')) |
| 28 | 1468 self.assertRaises(Exception, lambda: DoGet(_REMOTE, '/nope')) |
| 1469 self.assertRaises(Exception, lambda: DoGet(_REMOTE, '/nope/nope.html')) | |
| 1470 self.assertEqual(404, DoGetRaw(_REMOTE, '/nope')[0].status) | |
| 1471 self.assertEqual(404, DoGetRaw(_REMOTE, '/nope/nope.html')[0].status) | |
| 13 | 1472 |
| 1473 | |
| 1474 def test_echo(self): | |
| 1475 DoPost(_REMOTE, '/modalities/orthanctest/echo') | |
| 1476 | |
| 1477 | |
| 1478 def test_xml(self): | |
| 1479 json = DoGet(_REMOTE, '/tools', headers = { 'accept' : 'application/json' }) | |
| 1480 xml = minidom.parseString(DoGet(_REMOTE, '/tools', headers = { 'accept' : 'application/xml' })) | |
| 1481 items = xml.getElementsByTagName('root')[0].getElementsByTagName('item') | |
| 1482 self.assertEqual(len(items), len(json)) | |
| 1483 | |
| 1484 self.assertTrue('dicom-conformance' in json) | |
| 1485 | |
| 1486 ok = False | |
| 1487 for i in items: | |
| 1488 if i.childNodes[0].data == 'dicom-conformance': | |
| 1489 ok = True | |
| 1490 self.assertTrue(ok) | |
| 1491 | |
| 1492 | |
|
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1493 def test_googlecode_issue_16(self): |
| 13 | 1494 i = UploadInstance(_REMOTE, 'Issue16.dcm')['ID'] |
| 1495 t = DoGet(_REMOTE, '/instances/%s/tags?simplify' % i)['FrameIncrementPointer'] | |
| 1496 self.assertEqual('0018,1063', t) | |
| 1497 | |
| 1498 | |
|
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1499 def test_googlecode_issue_22(self): |
| 13 | 1500 s = UploadInstance(_REMOTE, 'Issue22.dcm')['ID'] |
| 1501 a = [ | |
| 1502 "f804691f62197040438f4627c6b994f1", # Frame 0 | |
| 1503 "c69eee9a51eea3e8611e82e578897254", | |
| 1504 "315666be83e2d0111c77bc0996d84901", | |
| 1505 "3e27aa959d911172c48a1436443c72b1", | |
| 1506 "958642c9e7e9d232d3869faff546058c", | |
| 1507 "5e7ea8e3e4230cae707d143481355c59", | |
| 1508 "eda37f83558d858a596175aed8b2ad47", | |
| 1509 "486713bd2895c4ecbe0e97715ac7f80a", | |
| 1510 "091ef729eb169e67da8a0faa9631f9a8", | |
| 1511 "5aa2b8c7ffe0a483efaa8e12417686ca", | |
| 1512 "e2f39e85896fe58876654b94cd0b5013", | |
| 1513 "6fd2129e4950abbe1be053bc814d5da8", | |
| 1514 "c3331a8ba7a757f3d423735ab7fa81f9", | |
| 1515 "746f808582156734dd6b6fdfd3a0b72c", | |
| 1516 "8075ea2b227a70c60ea6b7b75a6bb190", | |
| 1517 "806b8b3e300c615099c11a5ec23465aa", | |
| 1518 "7c836aa298ba6eef96434579af631a11", | |
| 1519 "a0357dc9f4f72d73a885c33d7c287446", | |
| 1520 "f25ba3be1cc7d7fad95706adc199ea7d", | |
| 1521 "8b114c526b8cbed6cad8a3248b7b480c", | |
| 1522 "44e6670f127e612a2b4aa60a0d207698", | |
| 1523 "b8945f90fe02facf2ace24ca1ecbe0a5", | |
| 1524 "95c796c2fa8f59018b15cf2987b1f79b", | |
| 1525 "ce0a51ab30224205b44920221dc27351", # Frame 23 | |
| 1526 ] | |
| 1527 | |
| 1528 self.assertEqual(24, len(DoGet(_REMOTE, '/instances/%s/frames' % s))) | |
| 1529 self.assertRaises(Exception, lambda: DoGet(_REMOTE, '/instances/%s/frames/24/preview' % s)) | |
| 1530 | |
| 1531 for i in range(len(a)): | |
| 1532 self.assertEqual(a[i], ComputeMD5(DoGet(_REMOTE, '/instances/%s/frames/%d/preview' % (s, i)))) | |
| 1533 | |
| 1534 | |
|
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1535 def test_googlecode_issue_19(self): |
|
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|
1536 # This is an image with "YBR_FULL" photometric interpretation, it is not supported by Orthanc |
| 13 | 1537 # gdcmconv -i /home/jodogne/DICOM/GdcmDatabase/US_DataSet/HDI5000_US/3EAF5E01 -w -o Issue19.dcm |
| 1538 | |
| 1539 a = UploadInstance(_REMOTE, 'Issue19.dcm')['ID'] | |
|
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|
1540 self.assertRaises(Exception, lambda: DoGet(_REMOTE, '/instances/941ad3c8-05d05b88-560459f9-0eae0e20-6cddd533/preview')) |
| 13 | 1541 |
| 1542 | |
|
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1543 def test_googlecode_issue_37(self): |
| 13 | 1544 # Same test for issues 35 and 37. Fixed in Orthanc 0.9.1 |
| 1545 u = UploadInstance(_REMOTE, 'Beaufix/IM-0001-0001.dcm')['ID'] | |
| 1546 | |
| 1547 a = DoPost(_REMOTE, '/tools/find', { 'Level' : 'Series', | |
| 1548 'CaseSensitive' : True, | |
| 1549 'Query' : { 'StationName' : 'SMR4-MP3' }}) | |
| 1550 self.assertEqual(1, len(a)) | |
| 14 | 1551 |
| 1552 | |
| 1553 def test_rest_find(self): | |
| 1554 # Upload 8 instances | |
| 1555 for i in range(2): | |
| 1556 UploadInstance(_REMOTE, 'Brainix/Flair/IM-0001-000%d.dcm' % (i + 1)) | |
| 1557 UploadInstance(_REMOTE, 'Brainix/Epi/IM-0001-000%d.dcm' % (i + 1)) | |
| 1558 UploadInstance(_REMOTE, 'Knee/T1/IM-0001-000%d.dcm' % (i + 1)) | |
| 1559 UploadInstance(_REMOTE, 'Knee/T2/IM-0001-000%d.dcm' % (i + 1)) | |
| 1560 | |
| 1561 a = DoPost(_REMOTE, '/tools/find', { 'Level' : 'Patient', | |
| 1562 'CaseSensitive' : False, | |
| 1563 'Query' : { 'PatientName' : '*n*' }}) | |
| 1564 self.assertEqual(2, len(a)) | |
| 1565 | |
| 1566 a = DoPost(_REMOTE, '/tools/find', { 'Level' : 'Patient', | |
| 1567 'CaseSensitive' : True, | |
| 1568 'Query' : { 'PatientName' : '*n*' }}) | |
| 1569 self.assertEqual(0, len(a)) | |
| 1570 | |
| 1571 a = DoPost(_REMOTE, '/tools/find', { 'Expand' : True, | |
| 1572 'Level' : 'Patient', | |
| 1573 'CaseSensitive' : False, | |
| 1574 'Query' : { 'PatientName' : '*ne*' }}) | |
| 1575 self.assertEqual(1, len(a)) | |
| 1576 self.assertEqual('20080822', a[0]['MainDicomTags']['PatientBirthDate']) | |
| 1577 | |
| 1578 a = DoPost(_REMOTE, '/tools/find', { 'Level' : 'Patient', | |
| 1579 'CaseSensitive' : True, | |
| 1580 'Query' : { 'PatientName' : '*ne*' }}) | |
| 1581 self.assertEqual(0, len(a)) | |
| 1582 | |
| 1583 a = DoPost(_REMOTE, '/tools/find', { 'Level' : 'Study', | |
| 1584 'CaseSensitive' : True, | |
| 1585 'Query' : { 'PatientName' : '*NE*' }}) | |
| 1586 self.assertEqual(1, len(a)) | |
| 1587 | |
| 1588 a = DoPost(_REMOTE, '/tools/find', { 'Level' : 'Series', | |
| 1589 'CaseSensitive' : True, | |
| 1590 'Query' : { 'PatientName' : '*NE*' }}) | |
| 1591 self.assertEqual(2, len(a)) | |
| 1592 | |
| 1593 a = DoPost(_REMOTE, '/tools/find', { 'Level' : 'Instance', | |
| 1594 'CaseSensitive' : True, | |
| 1595 'Query' : { 'PatientName' : '*NE*' }}) | |
| 1596 self.assertEqual(4, len(a)) | |
| 1597 | |
| 1598 a = DoPost(_REMOTE, '/tools/find', { 'Level' : 'Patient', 'Query' : { }}) | |
| 1599 self.assertEqual(2, len(a)) | |
| 1600 | |
| 1601 a = DoPost(_REMOTE, '/tools/find', { 'Level' : 'Study', 'Query' : { }}) | |
| 1602 self.assertEqual(2, len(a)) | |
| 1603 | |
| 1604 a = DoPost(_REMOTE, '/tools/find', { 'Level' : 'Series', 'Query' : { }}) | |
| 1605 self.assertEqual(4, len(a)) | |
| 1606 | |
| 1607 a = DoPost(_REMOTE, '/tools/find', { 'Level' : 'Instance', 'Query' : { }}) | |
| 1608 self.assertEqual(8, len(a)) | |
| 1609 | |
| 1610 | |
| 1611 def test_rest_query_retrieve(self): | |
| 1612 self.assertEqual(0, len(DoGet(_REMOTE, '/patients'))) | |
| 1613 | |
| 1614 # Upload 8 instances | |
| 1615 for i in range(2): | |
| 1616 UploadInstance(_REMOTE, 'Brainix/Flair/IM-0001-000%d.dcm' % (i + 1)) | |
| 1617 UploadInstance(_REMOTE, 'Brainix/Epi/IM-0001-000%d.dcm' % (i + 1)) | |
| 1618 UploadInstance(_REMOTE, 'Knee/T1/IM-0001-000%d.dcm' % (i + 1)) | |
| 1619 UploadInstance(_REMOTE, 'Knee/T2/IM-0001-000%d.dcm' % (i + 1)) | |
| 1620 | |
| 1621 self.assertEqual(2, len(DoGet(_REMOTE, '/patients'))) | |
| 1622 for p in DoGet(_REMOTE, '/patients'): | |
| 1623 DoPost(_REMOTE, '/modalities/orthanctest/store', p) | |
| 1624 DoDelete(_REMOTE, '/patients/%s' % p) | |
| 1625 | |
| 1626 for q in DoGet(_REMOTE, '/queries'): | |
| 1627 DoDelete(_REMOTE, '/queries/%s' % q) | |
| 1628 | |
| 1629 self.assertEqual(0, len(DoGet(_REMOTE, '/patients'))) | |
| 1630 self.assertEqual(0, len(DoGet(_REMOTE, '/queries'))) | |
| 1631 a = DoPost(_REMOTE, '/modalities/orthanctest/query', { 'Level' : 'Series', | |
| 27 | 1632 'Query' : { |
| 1633 'PatientName' : '*NE*', | |
| 1634 'StudyDate' : '*', | |
| 1635 }})['ID'] | |
| 14 | 1636 self.assertEqual(1, len(DoGet(_REMOTE, '/queries'))) |
| 1637 | |
| 1638 b = DoGet(_REMOTE, '/queries/%s' % a) | |
| 1639 self.assertTrue('answers' in b) | |
| 1640 self.assertTrue('level' in b) | |
| 1641 self.assertTrue('modality' in b) | |
| 1642 self.assertTrue('query' in b) | |
| 1643 self.assertTrue('retrieve' in b) | |
| 1644 self.assertEqual('Series', DoGet(_REMOTE, '/queries/%s/level' % a)) | |
| 1645 self.assertEqual('orthanctest', DoGet(_REMOTE, '/queries/%s/modality' % a)) | |
| 1646 | |
| 1647 q = DoGet(_REMOTE, '/queries/%s/query?simplify' % a) | |
| 27 | 1648 self.assertEqual(2, len(q)) |
| 14 | 1649 self.assertTrue('PatientName' in q) |
| 27 | 1650 self.assertTrue('StudyDate' in q) |
| 14 | 1651 self.assertEqual('*NE*', q['PatientName']) |
| 27 | 1652 self.assertEqual('*', q['StudyDate']) |
| 14 | 1653 |
| 1654 self.assertEqual(2, len(DoGet(_REMOTE, '/queries/%s/answers' % a))) | |
| 1655 | |
| 1656 s = DoGet(_REMOTE, '/queries/%s/answers/0' % a) | |
| 1657 self.assertTrue('content' in s) | |
| 1658 self.assertTrue('retrieve' in s) | |
| 1659 | |
| 1660 s = DoGet(_REMOTE, '/queries/%s/answers/0/content?simplify' % a) | |
| 1661 self.assertEqual('887', s['PatientID']) | |
| 1662 self.assertEqual('2.16.840.1.113669.632.20.121711.10000160881', s['StudyInstanceUID']) | |
| 1663 | |
| 1664 self.assertEqual(0, len(DoGet(_REMOTE, '/patients'))) | |
| 1665 DoPost(_REMOTE, '/queries/%s/answers/0/retrieve' % a, 'ORTHANC') | |
| 1666 self.assertEqual(1, len(DoGet(_REMOTE, '/patients'))) | |
| 1667 self.assertEqual(1, len(DoGet(_REMOTE, '/studies'))) | |
| 1668 self.assertEqual(1, len(DoGet(_REMOTE, '/series'))) | |
| 1669 self.assertEqual(2, len(DoGet(_REMOTE, '/instances'))) | |
| 1670 | |
| 112 | 1671 DoPost(_REMOTE, '/queries/%s/answers/1/retrieve' % a, 'ORTHANC', 'application/json') # make sure the issue #36 is fixed (query/retrieve Rest API: /retrieve route shall accept application/json content type) |
| 14 | 1672 self.assertEqual(1, len(DoGet(_REMOTE, '/patients'))) |
| 1673 self.assertEqual(1, len(DoGet(_REMOTE, '/studies'))) | |
| 1674 self.assertEqual(2, len(DoGet(_REMOTE, '/series'))) | |
| 1675 self.assertEqual(4, len(DoGet(_REMOTE, '/instances'))) | |
| 1676 | |
| 1677 DoDelete(_REMOTE, '/queries/%s' % a) | |
| 1678 self.assertEqual(0, len(DoGet(_REMOTE, '/queries'))) | |
| 1679 | |
| 1680 | |
| 1681 def test_parent(self): | |
| 1682 u = UploadInstance(_REMOTE, 'DummyCT.dcm')['ID'] | |
| 1683 patient = '6816cb19-844d5aee-85245eba-28e841e6-2414fae2' | |
| 1684 study = 'b9c08539-26f93bde-c81ab0d7-bffaf2cb-a4d0bdd0' | |
| 1685 series = 'f2635388-f01d497a-15f7c06b-ad7dba06-c4c599fe' | |
| 1686 instance = '66a662ce-7430e543-bad44d47-0dc5a943-ec7a538d' | |
|
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|
1687 self.assertEqual(instance, u) |
| 14 | 1688 |
| 1689 a = DoGet(_REMOTE, '/studies/%s/patient' % study) | |
| 1690 self.assertEqual('Patient', a['Type']) | |
| 1691 self.assertEqual(patient, a['ID']) | |
| 1692 | |
| 1693 a = DoGet(_REMOTE, '/series/%s/patient' % series) | |
| 1694 self.assertEqual('Patient', a['Type']) | |
| 1695 self.assertEqual(patient, a['ID']) | |
| 1696 | |
| 1697 a = DoGet(_REMOTE, '/series/%s/study' % series) | |
| 1698 self.assertEqual('Study', a['Type']) | |
| 1699 self.assertEqual(study, a['ID']) | |
| 1700 | |
| 1701 a = DoGet(_REMOTE, '/instances/%s/patient' % instance) | |
| 1702 self.assertEqual('Patient', a['Type']) | |
| 1703 self.assertEqual(patient, a['ID']) | |
| 1704 | |
| 1705 a = DoGet(_REMOTE, '/instances/%s/study' % instance) | |
| 1706 self.assertEqual('Study', a['Type']) | |
| 1707 self.assertEqual(study, a['ID']) | |
| 1708 | |
| 1709 a = DoGet(_REMOTE, '/instances/%s/series' % instance) | |
| 1710 self.assertEqual('Series', a['Type']) | |
| 1711 self.assertEqual(series, a['ID']) | |
| 1712 | |
| 1713 | |
| 1714 def test_shanon(self): | |
| 1715 def Anonymize(instance, replacements = {}): | |
| 119 | 1716 return DoPost(_REMOTE, '/instances/%s/anonymize' % instance, { |
| 1717 'Replace' : replacements, | |
| 1718 'Force' : True, | |
| 1719 }, 'application/json') | |
| 14 | 1720 |
| 1721 self.assertEqual(0, len(DoGet(_REMOTE, '/instances'))) | |
| 1722 u = UploadInstance(_REMOTE, 'DummyCT.dcm')['ID'] | |
| 1723 self.assertEqual(1, len(DoGet(_REMOTE, '/instances'))) | |
| 1724 | |
| 1725 tags = [ 'PatientID', 'StudyInstanceUID', 'SeriesInstanceUID', 'SOPInstanceUID', 'DeidentificationMethod' ] | |
| 1726 ids = [ 'ozp00SjY2xG', | |
| 1727 '1.2.840.113619.2.176.2025.1499492.7391.1171285944.390', | |
| 1728 '1.2.840.113619.2.176.2025.1499492.7391.1171285944.394', | |
| 1729 '1.2.840.113619.2.176.2025.1499492.7040.1171286242.109' ] | |
| 1730 | |
| 1731 a = ExtractDicomTags(Anonymize(u), tags) | |
| 1732 for i in range(4): | |
| 1733 self.assertNotEqual(ids[i], a[i]) | |
| 1734 self.assertTrue(a[4].startswith('Orthanc')) | |
| 1735 | |
| 1736 a = ExtractDicomTags(Anonymize(u, { 'PatientName' : 'toto' }), tags) | |
| 1737 for i in range(4): | |
| 1738 self.assertNotEqual(ids[i], a[i]) | |
| 1739 self.assertFalse(a[4].startswith('Orthanc')) | |
| 1740 | |
| 1741 a = ExtractDicomTags(Anonymize(u, { 'SOPInstanceUID' : 'instance' }), tags) | |
| 1742 self.assertEqual('instance', a[3]) | |
| 1743 self.assertFalse(a[4].startswith('Orthanc')) | |
| 1744 | |
| 1745 a = ExtractDicomTags(Anonymize(u, { 'SeriesInstanceUID' : 'series' }), tags) | |
| 1746 self.assertEqual('series', a[2]) | |
| 1747 self.assertFalse(a[4].startswith('Orthanc')) | |
| 1748 | |
| 1749 a = ExtractDicomTags(Anonymize(u, { 'StudyInstanceUID' : 'study' }), tags) | |
| 1750 self.assertEqual('study', a[1]) | |
| 1751 self.assertFalse(a[4].startswith('Orthanc')) | |
| 1752 | |
| 1753 a = ExtractDicomTags(Anonymize(u, { 'PatientID' : 'patient' }), tags) | |
| 1754 self.assertEqual('patient', a[0]) | |
| 1755 self.assertFalse(a[4].startswith('Orthanc')) | |
| 1756 | |
| 1757 a = ExtractDicomTags(Anonymize(u, { 'PatientID' : 'patient', | |
| 1758 'StudyInstanceUID' : 'study', | |
| 1759 'SeriesInstanceUID' : 'series', | |
| 1760 'SOPInstanceUID' : 'instance' }), tags) | |
| 1761 self.assertEqual('patient', a[0]) | |
| 1762 self.assertFalse(a[4].startswith('Orthanc')) | |
| 1763 | |
| 1764 self.assertEqual(1, len(DoGet(_REMOTE, '/instances'))) | |
| 1765 | |
| 1766 | |
| 1767 def test_shanon_2(self): | |
| 1768 def Modify(instance, replacements = {}): | |
| 119 | 1769 return DoPost(_REMOTE, '/instances/%s/modify' % instance, { |
| 1770 'Replace' : replacements, | |
| 1771 'Force': True, | |
| 1772 }, 'application/json') | |
| 14 | 1773 |
| 1774 self.assertEqual(0, len(DoGet(_REMOTE, '/instances'))) | |
| 1775 u = UploadInstance(_REMOTE, 'DummyCT.dcm')['ID'] | |
| 1776 self.assertEqual(1, len(DoGet(_REMOTE, '/instances'))) | |
| 1777 | |
| 1778 tags = [ 'PatientID', 'StudyInstanceUID', 'SeriesInstanceUID', 'SOPInstanceUID', 'DeidentificationMethod' ] | |
| 1779 ids = [ 'ozp00SjY2xG', | |
| 1780 '1.2.840.113619.2.176.2025.1499492.7391.1171285944.390', | |
| 1781 '1.2.840.113619.2.176.2025.1499492.7391.1171285944.394', | |
| 1782 '1.2.840.113619.2.176.2025.1499492.7040.1171286242.109' ] | |
| 1783 | |
| 1784 a = ExtractDicomTags(Modify(u), tags) | |
| 1785 self.assertEqual(ids[0], a[0]) | |
| 1786 self.assertEqual(ids[1], a[1]) | |
| 1787 self.assertEqual(ids[2], a[2]) | |
| 1788 self.assertNotEqual(ids[3], a[3]) | |
| 1789 self.assertEqual(0, len(a[4])) | |
| 1790 | |
| 1791 a = ExtractDicomTags(Modify(u, { 'SOPInstanceUID' : 'instance' }), tags) | |
| 1792 self.assertEqual(ids[0], a[0]) | |
| 1793 self.assertEqual(ids[1], a[1]) | |
| 1794 self.assertEqual(ids[2], a[2]) | |
| 1795 self.assertEqual('instance', a[3]) | |
| 1796 | |
| 1797 a = ExtractDicomTags(Modify(u, { 'SeriesInstanceUID' : 'series' }), tags) | |
| 1798 self.assertEqual(ids[0], a[0]) | |
| 1799 self.assertEqual(ids[1], a[1]) | |
| 1800 self.assertEqual('series', a[2]) | |
| 1801 self.assertNotEqual(ids[3], a[3]) | |
| 1802 | |
| 1803 a = ExtractDicomTags(Modify(u, { 'StudyInstanceUID' : 'study' }), tags) | |
| 1804 self.assertEqual(ids[0], a[0]) | |
| 1805 self.assertEqual('study', a[1]) | |
| 1806 self.assertNotEqual(ids[2], a[2]) | |
| 1807 self.assertNotEqual(ids[3], a[3]) | |
| 1808 | |
| 1809 a = ExtractDicomTags(Modify(u, { 'PatientID' : 'patient' }), tags) | |
| 1810 self.assertEqual('patient', a[0]) | |
| 1811 self.assertNotEqual(ids[1], a[1]) | |
| 1812 self.assertNotEqual(ids[2], a[2]) | |
| 1813 self.assertNotEqual(ids[3], a[3]) | |
| 1814 | |
| 1815 a = ExtractDicomTags(Modify(u, { 'PatientID' : 'patient', | |
| 1816 'StudyInstanceUID' : 'study', | |
| 1817 'SeriesInstanceUID' : 'series', | |
| 1818 'SOPInstanceUID' : 'instance' }), tags) | |
| 1819 self.assertEqual('patient', a[0]) | |
| 1820 self.assertEqual('study', a[1]) | |
| 1821 self.assertEqual('series', a[2]) | |
| 1822 self.assertEqual('instance', a[3]) | |
| 1823 | |
| 1824 self.assertEqual(1, len(DoGet(_REMOTE, '/instances'))) | |
| 1825 | |
| 1826 | |
| 1827 def test_instances_tags(self): | |
| 1828 a = UploadInstance(_REMOTE, 'Knee/T1/IM-0001-0001.dcm')['ID'] | |
| 1829 b = UploadInstance(_REMOTE, 'Knee/T2/IM-0001-0001.dcm')['ID'] | |
| 1830 #a = UploadInstance(_REMOTE, 'Cardiac/MR.X.1.2.276.0.7230010.3.1.4.2831157719.2256.1336386937.676343')['ID'] | |
| 1831 #b = UploadInstance(_REMOTE, 'Cardiac/MR.X.1.2.276.0.7230010.3.1.4.2831157719.2256.1336386925.676329')['ID'] | |
| 1832 | |
| 1833 i = DoGet(_REMOTE, '/patients/%s/instances-tags?simplify' % DoGet(_REMOTE, '/patients')[0]) | |
| 1834 self.assertEqual(2, len(i)) | |
| 1835 self.assertEqual('887', i[i.keys()[0]]['PatientID']) | |
| 1836 self.assertEqual('887', i[i.keys()[1]]['PatientID']) | |
| 1837 | |
| 1838 i = DoGet(_REMOTE, '/patients/%s/instances-tags?simplify' % DoGet(_REMOTE, '/studies')[0]) | |
| 1839 self.assertEqual(2, len(i)) | |
| 1840 self.assertEqual('887', i[i.keys()[0]]['PatientID']) | |
| 1841 self.assertEqual('887', i[i.keys()[1]]['PatientID']) | |
| 1842 | |
| 1843 self.assertEqual(2, len(DoGet(_REMOTE, '/series'))) | |
| 1844 i = DoGet(_REMOTE, '/patients/%s/instances-tags?simplify' % DoGet(_REMOTE, '/series')[0]) | |
| 1845 self.assertEqual(1, len(i)) | |
| 1846 self.assertEqual('887', i[i.keys()[0]]['PatientID']) | |
| 1847 | |
| 1848 i = DoGet(_REMOTE, '/patients/%s/instances-tags?simplify' % DoGet(_REMOTE, '/series')[1]) | |
| 1849 self.assertEqual(1, len(i)) | |
| 1850 self.assertEqual('887', i[i.keys()[0]]['PatientID']) | |
| 1851 | |
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1852 i = DoGet(_REMOTE, '/patients/%s/instances-tags?short' % DoGet(_REMOTE, '/series')[1]) |
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1853 self.assertEqual(1, len(i)) |
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1854 self.assertEqual('887', i[i.keys()[0]]['0010,0020']) |
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1855 |
| 14 | 1856 |
| 1857 def test_lookup(self): | |
| 1858 a = DoPost(_REMOTE, '/tools/lookup', 'ozp00SjY2xG') | |
| 1859 self.assertEqual(0, len(a)) | |
| 1860 | |
| 1861 UploadInstance(_REMOTE, 'DummyCT.dcm') | |
| 1862 | |
| 1863 a = DoPost(_REMOTE, '/tools/lookup', 'ozp00SjY2xG') | |
| 1864 self.assertEqual(1, len(a)) | |
| 1865 self.assertEqual('Patient', a[0]['Type']) | |
| 1866 self.assertEqual('6816cb19-844d5aee-85245eba-28e841e6-2414fae2', a[0]['ID']) | |
| 1867 self.assertEqual('/patients/%s' % a[0]['ID'], a[0]['Path']) | |
| 1868 | |
| 1869 a = DoPost(_REMOTE, '/tools/lookup', '1.2.840.113619.2.176.2025.1499492.7391.1171285944.390') | |
| 1870 self.assertEqual(1, len(a)) | |
| 1871 self.assertEqual('Study', a[0]['Type']) | |
| 1872 self.assertEqual('b9c08539-26f93bde-c81ab0d7-bffaf2cb-a4d0bdd0', a[0]['ID']) | |
| 1873 self.assertEqual('/studies/%s' % a[0]['ID'], a[0]['Path']) | |
| 1874 | |
| 1875 a = DoPost(_REMOTE, '/tools/lookup', '1.2.840.113619.2.176.2025.1499492.7391.1171285944.394') | |
| 1876 self.assertEqual(1, len(a)) | |
| 1877 self.assertEqual('Series', a[0]['Type']) | |
| 1878 self.assertEqual('f2635388-f01d497a-15f7c06b-ad7dba06-c4c599fe', a[0]['ID']) | |
| 1879 self.assertEqual('/series/%s' % a[0]['ID'], a[0]['Path']) | |
| 1880 | |
| 1881 a = DoPost(_REMOTE, '/tools/lookup', '1.2.840.113619.2.176.2025.1499492.7040.1171286242.109') | |
| 1882 self.assertEqual(1, len(a)) | |
| 1883 self.assertEqual('Instance', a[0]['Type']) | |
| 1884 self.assertEqual('66a662ce-7430e543-bad44d47-0dc5a943-ec7a538d', a[0]['ID']) | |
| 1885 self.assertEqual('/instances/%s' % a[0]['ID'], a[0]['Path']) | |
| 1886 | |
| 1887 DropOrthanc(_REMOTE) | |
| 1888 a = DoPost(_REMOTE, '/tools/lookup', '3113719P') | |
| 1889 self.assertEqual(0, len(a)) | |
| 1890 | |
| 15 | 1891 |
| 1892 def test_autorouting(self): | |
| 1893 knee1 = 'Knee/T1/IM-0001-0001.dcm' | |
| 1894 knee2 = 'Knee/T2/IM-0001-0002.dcm' | |
| 1895 other = 'Brainix/Flair/IM-0001-0001.dcm' | |
| 1896 | |
| 1897 # Check that this version is >= 0.8.0 | |
| 1898 self.assertTrue(IsDefinedInLua(_REMOTE, '_InitializeJob')) | |
| 1899 self.assertTrue('orthanctest' in DoGet(_REMOTE, '/modalities')) | |
| 1900 | |
| 1901 UploadInstance(_REMOTE, knee1) | |
| 1902 self.assertEqual(0, len(DoGet(_LOCAL, '/instances'))) | |
| 1903 | |
| 1904 DropOrthanc(_REMOTE) | |
| 1905 DropOrthanc(_LOCAL) | |
| 174 | 1906 InstallLuaScriptFromPath(_REMOTE, 'Lua/Autorouting.lua') |
| 15 | 1907 UploadInstance(_REMOTE, knee1) |
| 1908 UploadInstance(_REMOTE, knee2) | |
| 1909 UploadInstance(_REMOTE, other) | |
| 1910 WaitEmpty(_REMOTE) | |
| 174 | 1911 UninstallLuaCallbacks(_REMOTE) |
| 15 | 1912 self.assertEqual(3, len(DoGet(_LOCAL, '/instances'))) |
| 1913 | |
| 1914 DropOrthanc(_REMOTE) | |
| 1915 DropOrthanc(_LOCAL) | |
| 174 | 1916 InstallLuaScriptFromPath(_REMOTE, 'Lua/AutoroutingConditional.lua') |
| 15 | 1917 UploadInstance(_REMOTE, knee1) |
| 1918 UploadInstance(_REMOTE, knee2) | |
| 1919 UploadInstance(_REMOTE, other) | |
| 1920 WaitEmpty(_REMOTE) | |
| 174 | 1921 UninstallLuaCallbacks(_REMOTE) |
| 15 | 1922 self.assertEqual(2, len(DoGet(_LOCAL, '/instances'))) |
| 1923 | |
| 1924 DropOrthanc(_REMOTE) | |
| 1925 DropOrthanc(_LOCAL) | |
| 174 | 1926 InstallLuaScriptFromPath(_REMOTE, 'Lua/AutoroutingModification.lua') |
| 15 | 1927 UploadInstance(_REMOTE, knee1) |
| 1928 WaitEmpty(_REMOTE) | |
| 174 | 1929 UninstallLuaCallbacks(_REMOTE) |
| 15 | 1930 i = DoGet(_LOCAL, '/instances') |
| 1931 self.assertEqual(1, len(i)) | |
| 1932 | |
| 1933 with tempfile.NamedTemporaryFile(delete = True) as f: | |
| 1934 f.write(DoGet(_LOCAL, '/instances/%s/file' % i[0])) | |
| 1935 f.flush() | |
| 45 | 1936 routed = subprocess.check_output([ FindExecutable('dcm2xml'), f.name ]) |
| 15 | 1937 self.assertEqual('My Medical Device', re.search('"StationName">(.*?)<', routed).group(1).strip()) |
| 1938 self.assertEqual(None, re.search('"MilitaryRank"', routed)) | |
| 1939 self.assertEqual(None, re.search('"0051,0010"', routed)) # A private tag | |
| 17 | 1940 |
| 1941 | |
| 1942 def test_storescu_rf(self): | |
| 1943 i = UploadInstance(_REMOTE, 'KarstenHilbertRF.dcm')['ID'] | |
| 1944 self.assertEqual(0, len(DoGet(_LOCAL, '/instances'))) | |
| 1945 j = DoPost(_REMOTE, '/modalities/orthanctest/store', str(i), 'text/plain') | |
| 1946 self.assertEqual(1, len(DoGet(_LOCAL, '/instances'))) | |
| 18 | 1947 |
| 1948 | |
| 1949 def test_anonymize_instance(self): | |
| 1950 def AnonymizeAndUpload(instanceId, parameters): | |
| 1951 return DoPost(_REMOTE, '/instances', DoPost(_REMOTE, '/instances/%s/anonymize' % instanceId, parameters, | |
| 1952 'application/json'), 'application/dicom')['ID'] | |
| 1953 | |
| 1954 def ModifyAndUpload(instanceId, parameters): | |
| 1955 return DoPost(_REMOTE, '/instances', DoPost(_REMOTE, '/instances/%s/modify' % instanceId, parameters, | |
| 1956 'application/json'), 'application/dicom')['ID'] | |
| 1957 | |
| 1958 a = UploadInstance(_REMOTE, 'PrivateMDNTags.dcm')['ID'] | |
| 1959 s1 = DoGet(_REMOTE, '/instances/%s/content/PatientName' % a) | |
| 1960 s2 = DoGet(_REMOTE, '/instances/%s/content/00e1-10c2' % a) # Some private tag | |
| 1961 s3 = DoGet(_REMOTE, '/instances/%s/content/StudyDescription' % a) | |
| 1962 s4 = DoGet(_REMOTE, '/instances/%s/content/SeriesDescription' % a) | |
| 1963 s5 = DoGet(_REMOTE, '/instances/%s/content/InstitutionName' % a) | |
| 1964 | |
| 1965 b = AnonymizeAndUpload(a, '{}') | |
| 1966 self.assertNotEqual(s1, DoGet(_REMOTE, '/instances/%s/content/PatientName' % b)) | |
| 1967 self.assertRaises(Exception, lambda: DoGet(_REMOTE, '/instances/%s/content/00e1-10c2' % b)) | |
| 1968 | |
| 1969 # Keep private tag (only OK since Orthanc 0.8.0) | |
| 1970 b = AnonymizeAndUpload(a, '{"Keep":["00e1-10c2"]}') | |
| 1971 self.assertNotEqual(s1, DoGet(_REMOTE, '/instances/%s/content/PatientName' % b)) | |
| 1972 self.assertEqual(s2, DoGet(_REMOTE, '/instances/%s/content/00e1-10c2' % b)) | |
| 1973 | |
| 1974 b = AnonymizeAndUpload(a, '{"Keep":["00e1,10c2","PatientName"]}') | |
| 1975 self.assertEqual(s1, DoGet(_REMOTE, '/instances/%s/content/PatientName' % b)) | |
| 1976 self.assertEqual(s2, DoGet(_REMOTE, '/instances/%s/content/00e1-10c2' % b)) | |
| 1977 | |
| 1978 b = AnonymizeAndUpload(a, '{"Keep":["PatientName"],"Replace":{"00e1,10c2":"Hello"}}') | |
| 1979 self.assertEqual(s1, DoGet(_REMOTE, '/instances/%s/content/PatientName' % b)) | |
| 1980 self.assertTrue(DoGet(_REMOTE, '/instances/%s/content/00e1-10c2' % b).startswith('Hello')) | |
| 1981 | |
| 1982 # Examples from the Wiki | |
|
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1983 b = AnonymizeAndUpload(a, '{"Replace":{"PatientName":"hello","0010-0020":"world"},"Keep":["StudyDescription", "SeriesDescription"],"KeepPrivateTags": true,"Force":true}') |
| 18 | 1984 self.assertEqual('hello', DoGet(_REMOTE, '/instances/%s/content/0010-0010' % b).strip()) |
| 1985 self.assertEqual('world', DoGet(_REMOTE, '/instances/%s/content/PatientID' % b).strip()) | |
| 1986 self.assertEqual(s3, DoGet(_REMOTE, '/instances/%s/content/0008,1030' % b)) | |
| 1987 self.assertEqual(s4, DoGet(_REMOTE, '/instances/%s/content/0008,103e' % b)) | |
| 1988 self.assertEqual(s4, DoGet(_REMOTE, '/instances/%s/content/0008-103E' % b)) | |
| 1989 self.assertEqual(s2, DoGet(_REMOTE, '/instances/%s/content/00e1-10c2' % b)) | |
| 1990 DoGet(_REMOTE, '/instances/%s/content/InstitutionName' % a) | |
| 1991 self.assertRaises(Exception, lambda: DoGet(_REMOTE, '/instances/%s/content/InstitutionName' % b)) | |
| 1992 | |
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1993 b = ModifyAndUpload(a, '{"Replace":{"PatientName":"hello","PatientID":"world"},"Remove":["InstitutionName"],"RemovePrivateTags": true,"Force":true}') |
| 18 | 1994 self.assertEqual('hello', DoGet(_REMOTE, '/instances/%s/content/0010-0010' % b).strip()) |
| 1995 self.assertEqual('world', DoGet(_REMOTE, '/instances/%s/content/PatientID' % b).strip()) | |
| 1996 self.assertEqual(s3, DoGet(_REMOTE, '/instances/%s/content/0008,1030' % b)) | |
| 1997 self.assertEqual(s4, DoGet(_REMOTE, '/instances/%s/content/0008,103e' % b)) | |
| 1998 self.assertRaises(Exception, lambda: DoGet(_REMOTE, '/instances/%s/content/00e1-10c2' % b)) | |
| 1999 self.assertRaises(Exception, lambda: DoGet(_REMOTE, '/instances/%s/content/InstitutionName' % b)) | |
| 2000 | |
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2001 b = ModifyAndUpload(a, '{"Replace":{"PatientName":"hello","PatientID":"world"},"Force":true}') |
| 18 | 2002 self.assertEqual('hello', DoGet(_REMOTE, '/instances/%s/content/0010-0010' % b).strip()) |
| 2003 self.assertEqual('world', DoGet(_REMOTE, '/instances/%s/content/PatientID' % b).strip()) | |
| 2004 self.assertEqual(s2, DoGet(_REMOTE, '/instances/%s/content/00e1,10c2' % b)) | |
| 2005 self.assertEqual(s3, DoGet(_REMOTE, '/instances/%s/content/0008,1030' % b)) | |
| 2006 self.assertEqual(s4, DoGet(_REMOTE, '/instances/%s/content/0008-103E' % b)) | |
| 2007 self.assertEqual(s5, DoGet(_REMOTE, '/instances/%s/content/InstitutionName' % b)) | |
| 2008 | |
| 2009 | |
| 2010 # Test modify non-existing | |
| 2011 i = DoPost(_REMOTE, '/tools/create-dicom', | |
| 2012 json.dumps({ | |
| 2013 'PatientName' : 'Jodogne', | |
| 2014 'Modality' : 'CT', | |
| 2015 }))['ID'] | |
| 2016 | |
| 2017 self.assertEqual('Jodogne', DoGet(_REMOTE, '/instances/%s/content/PatientName' % i).strip()) | |
| 2018 self.assertRaises(Exception, lambda: DoGet(_REMOTE, '/instances/%s/content/StudyDescription' % i)) | |
| 2019 self.assertEqual('CT', DoGet(_REMOTE, '/instances/%s/content/Modality' % i).strip()) | |
| 2020 | |
| 2021 b = ModifyAndUpload(i, '{"Replace":{"StudyDescription":"hello","Modality":"world"}}') | |
| 2022 self.assertEqual('Jodogne', DoGet(_REMOTE, '/instances/%s/content/PatientName' % b).strip()) | |
| 2023 self.assertEqual('hello', DoGet(_REMOTE, '/instances/%s/content/StudyDescription' % b).strip()) | |
| 2024 self.assertEqual('world', DoGet(_REMOTE, '/instances/%s/content/Modality' % b).strip()) | |
| 2025 | |
|
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2026 |
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2027 def test_incoming_jpeg(self): |
|
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2028 def storescu(image, acceptUnknownSopClassUid): |
|
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2029 if acceptUnknownSopClassUid: |
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2030 tmp = [ '-xf', GetDatabasePath('UnknownSopClassUid.cfg'), 'Default' ] |
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2031 else: |
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2032 tmp = [ '-xs' ] |
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2033 |
|
21
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2034 with open(os.devnull, 'w') as FNULL: |
|
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2035 subprocess.check_call([ FindExecutable('storescu') ] + tmp + |
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2036 [ _REMOTE['Server'], str(_REMOTE['DicomPort']), |
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|
2037 GetDatabasePath(image) ], |
|
21
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2038 stderr = FNULL) |
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2039 |
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2040 self.assertEqual(0, len(DoGet(_REMOTE, '/patients'))) |
| 174 | 2041 InstallLuaScriptFromPath(_REMOTE, 'Lua/TransferSyntaxDisable.lua') |
|
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2042 self.assertRaises(Exception, lambda: storescu('Knix/Loc/IM-0001-0001.dcm', False)) |
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2043 self.assertRaises(Exception, lambda: storescu('UnknownSopClassUid.dcm', True)) |
|
21
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2044 self.assertEqual(0, len(DoGet(_REMOTE, '/patients'))) |
| 174 | 2045 InstallLuaScriptFromPath(_REMOTE, 'Lua/TransferSyntaxEnable.lua') |
|
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|
2046 DoPost(_REMOTE, '/tools/execute-script', "print('All special transfer syntaxes are now accepted')") |
|
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2047 storescu('Knix/Loc/IM-0001-0001.dcm', False) |
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2048 storescu('UnknownSopClassUid.dcm', True) |
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|
2049 self.assertEqual(2, len(DoGet(_REMOTE, '/patients'))) |
|
21
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2050 |
|
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|
2051 |
|
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|
2052 def test_storescu_jpeg(self): |
|
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2053 self.assertEqual(0, len(DoGet(_REMOTE, '/exports')['Exports'])) |
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|
2054 |
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|
2055 knixStudy = 'b9c08539-26f93bde-c81ab0d7-bffaf2cb-a4d0bdd0' |
| 64 | 2056 i = UploadInstance(_REMOTE, 'Knix/Loc/IM-0001-0001.dcm')['ID'] |
| 2057 | |
| 2058 # This is JPEG lossless | |
|
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2059 self.assertEqual('1.2.840.10008.1.2.4.70', DoGet(_REMOTE, '/instances/%s/header' % i)['0002,0010']['Value']) |
| 64 | 2060 self.assertEqual('1.2.840.10008.1.2.4.70', DoGet(_REMOTE, '/instances/%s/header?simplify' % i)['TransferSyntaxUID']) |
|
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2061 self.assertEqual('1.2.840.10008.1.2.4.70', DoGet(_REMOTE, '/instances/%s/header?short' % i)['0002,0010']) |
| 64 | 2062 |
|
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2063 UploadInstance(_REMOTE, 'Knix/Loc/IM-0001-0002.dcm') |
|
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2064 UploadInstance(_REMOTE, 'Knix/Loc/IM-0001-0003.dcm') |
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2065 |
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2066 a = UploadInstance(_REMOTE, 'Brainix/Flair/IM-0001-0001.dcm')['ID'] |
|
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2067 b = UploadInstance(_REMOTE, 'ColorTestImageJ.dcm')['ID'] |
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2068 self.assertEqual(0, len(DoGet(_LOCAL, '/instances'))) |
|
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2069 DoPost(_REMOTE, '/modalities/orthanctest/store', [ knixStudy, a, b ]) |
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2070 self.assertEqual(5, len(DoGet(_LOCAL, '/instances'))) |
|
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2071 |
|
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2072 self.assertEqual(3, len(DoGet(_REMOTE, '/exports')['Exports'])) |
|
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|
2073 |
|
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|
2074 DropOrthanc(_REMOTE) |
|
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2075 self.assertEqual(0, len(DoGet(_REMOTE, '/exports')['Exports'])) |
|
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|
2076 |
|
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|
2077 |
|
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|
2078 def test_pixel_data(self): |
|
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|
2079 jpeg = UploadInstance(_REMOTE, 'Knix/Loc/IM-0001-0001.dcm')['ID'] |
|
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2080 color = UploadInstance(_REMOTE, 'ColorTestImageJ.dcm')['ID'] |
|
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|
2081 phenix = UploadInstance(_REMOTE, 'Phenix/IM-0001-0001.dcm')['ID'] |
|
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|
2082 |
|
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|
2083 phenixSize = 358 * 512 * 2 |
|
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|
2084 colorSize = 1000 * 1000 * 3 |
|
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|
2085 jpegSize = 51918 |
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2086 |
|
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2087 self.assertEqual(1, len(DoGet(_REMOTE, '/instances/%s/content/7fe0-0010' % phenix))) |
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2088 self.assertEqual(1, len(DoGet(_REMOTE, '/instances/%s/content/7fe0-0010' % color))) |
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2089 self.assertEqual(2, len(DoGet(_REMOTE, '/instances/%s/content/7fe0-0010' % jpeg))) |
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2090 |
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2091 self.assertEqual(0, len(DoGet(_REMOTE, '/instances/%s/content/7fe0-0010/0' % jpeg))) |
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2092 self.assertEqual(jpegSize, len(DoGet(_REMOTE, '/instances/%s/content/7fe0-0010/1' % jpeg))) |
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2093 |
|
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|
2094 self.assertEqual(phenixSize, len(DoGet(_REMOTE, '/instances/%s/content/7fe0-0010/0' % phenix))) |
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2095 self.assertEqual(colorSize, len(DoGet(_REMOTE, '/instances/%s/content/7fe0-0010/0' % color))) |
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2096 |
|
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2097 |
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|
2098 def test_decode_brainix(self): |
|
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2099 brainix = [ |
|
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2100 UploadInstance(_REMOTE, 'Brainix/Epi/IM-0001-0001.dcm')['ID'], # (*) |
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2101 UploadInstance(_REMOTE, 'Formats/JpegLossless.dcm')['ID'], # JPEG-LS, same as (*) (since Orthanc 0.7.6) |
|
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2102 UploadInstance(_REMOTE, 'Formats/Jpeg.dcm')['ID'], # JPEG, same as (*) (since Orthanc 0.7.6) |
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2103 ] |
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|
2104 h = '6fb11b932d535c2be04beabd99793ff8' |
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2105 maxValue = 426.0 |
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2106 |
|
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2107 truth = Image.open(GetDatabasePath('Formats/Brainix.png')) |
|
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2108 for i in brainix: |
|
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2109 self.AssertSameImages(truth.getdata(), '/instances/%s/image-int16' % i) |
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2110 self.AssertSameImages(truth.getdata(), '/instances/%s/image-uint16' % i) |
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2111 |
|
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2112 truth2 = map(lambda x: min(255, x), truth.getdata()) |
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2113 for i in brainix: |
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|
2114 self.AssertSameImages(truth2, '/instances/%s/image-uint8' % i) |
|
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diff
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|
2115 |
|
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diff
changeset
|
2116 truth2 = map(lambda x: x * 255.0 / maxValue, truth.getdata()) |
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diff
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|
2117 for i in brainix: |
|
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diff
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|
2118 self.AssertSameImages(truth2, '/instances/%s/preview' % i) |
|
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diff
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|
2119 |
|
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parents:
18
diff
changeset
|
2120 for i in brainix: |
|
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18
diff
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|
2121 self.assertEqual(h, ComputeMD5(DoGet(_REMOTE, '/instances/%s/matlab' % i))) |
|
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diff
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|
2122 |
|
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diff
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|
2123 |
|
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18
diff
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|
2124 def test_decode_color(self): |
|
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diff
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2125 imagej = UploadInstance(_REMOTE, 'ColorTestImageJ.dcm')['ID'] |
|
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diff
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|
2126 color = UploadInstance(_REMOTE, 'ColorTestMalaterre.dcm')['ID'] |
|
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diff
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|
2127 |
|
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18
diff
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|
2128 for i in [ imagej, color ]: |
|
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parents:
18
diff
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|
2129 for j in [ 'image-uint8', 'image-uint16', 'image-int16' ]: |
|
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diff
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|
2130 self.assertRaises(Exception, lambda: DoGet(_REMOTE, '/instances/%s/%s' % (i, j))) |
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diff
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|
2131 |
|
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diff
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|
2132 self.assertEqual('c14c687f7a1ea9fe022479fc87c67274', ComputeMD5(DoGet(_REMOTE, '/instances/%s/preview' % imagej))) |
|
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diff
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|
2133 self.assertEqual('a87d122918a56f803bcfe9d2586b9125', ComputeMD5(DoGet(_REMOTE, '/instances/%s/preview' % color))) |
|
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parents:
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diff
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|
2134 |
|
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diff
changeset
|
2135 self.assertEqual('30cc46bfa7aba77a40e4178f6184c25a', ComputeMD5(DoGet(_REMOTE, '/instances/%s/matlab' % imagej))) |
|
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diff
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|
2136 self.assertEqual('ff195005cef06b59666fd220a9b4cd9a', ComputeMD5(DoGet(_REMOTE, '/instances/%s/matlab' % color))) |
|
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diff
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|
2137 |
|
2a29bcff60a7
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parents:
18
diff
changeset
|
2138 |
|
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diff
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|
2139 def test_decode_rf(self): |
|
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parents:
18
diff
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|
2140 rf = UploadInstance(_REMOTE, 'KarstenHilbertRF.dcm')['ID'] |
|
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diff
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|
2141 truth = Image.open(GetDatabasePath('Formats/KarstenHilbertRF.png')) |
|
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diff
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|
2142 |
|
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diff
changeset
|
2143 self.AssertSameImages(truth.getdata(), '/instances/%s/image-uint8' % rf) |
|
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diff
changeset
|
2144 self.AssertSameImages(truth.getdata(), '/instances/%s/image-uint16' % rf) |
|
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18
diff
changeset
|
2145 self.AssertSameImages(truth.getdata(), '/instances/%s/image-int16' % rf) |
|
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18
diff
changeset
|
2146 self.AssertSameImages(truth.getdata(), '/instances/%s/preview' % rf) |
|
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parents:
18
diff
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|
2147 |
|
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diff
changeset
|
2148 self.assertEqual('42254d70efd2f4a1b8f3455909689f0e', ComputeMD5(DoGet(_REMOTE, '/instances/%s/matlab' % rf))) |
|
2a29bcff60a7
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parents:
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diff
changeset
|
2149 |
|
2a29bcff60a7
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parents:
18
diff
changeset
|
2150 |
|
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parents:
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diff
changeset
|
2151 def test_decode_multiframe(self): |
|
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diff
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|
2152 mf = UploadInstance(_REMOTE, 'Multiframe.dcm')['ID'] |
|
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parents:
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diff
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|
2153 |
|
2a29bcff60a7
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diff
changeset
|
2154 # Test the first frame |
|
2a29bcff60a7
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parents:
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diff
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|
2155 truth = Image.open(GetDatabasePath('Formats/Multiframe0.png')) |
|
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diff
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|
2156 self.AssertSameImages(truth.getdata(), '/instances/%s/image-uint8' % mf) |
|
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diff
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|
2157 self.AssertSameImages(truth.getdata(), '/instances/%s/image-uint16' % mf) |
|
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diff
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|
2158 self.AssertSameImages(truth.getdata(), '/instances/%s/image-int16' % mf) |
|
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diff
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|
2159 self.AssertSameImages(truth.getdata(), '/instances/%s/preview' % mf) |
|
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18
diff
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|
2160 self.assertEqual('9812b99d93bbcd4e7684ded089b5dfb3', ComputeMD5(DoGet(_REMOTE, '/instances/%s/matlab' % mf))) |
|
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18
diff
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|
2161 |
|
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18
diff
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|
2162 self.AssertSameImages(truth.getdata(), '/instances/%s/frames/0/image-uint16' % mf) |
|
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parents:
18
diff
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|
2163 |
|
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18
diff
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|
2164 # Test the last frame |
|
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18
diff
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|
2165 truth = Image.open(GetDatabasePath('Formats/Multiframe75.png')) |
|
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18
diff
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|
2166 self.AssertSameImages(truth.getdata(), '/instances/%s/frames/75/image-uint16' % mf) |
|
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18
diff
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|
2167 |
|
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18
diff
changeset
|
2168 |
|
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diff
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|
2169 def test_decode_signed(self): |
|
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parents:
18
diff
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|
2170 signed = UploadInstance(_REMOTE, 'SignedCT.dcm')['ID'] |
|
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18
diff
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|
2171 minValue = -2000 |
|
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18
diff
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|
2172 maxValue = 4042 |
|
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18
diff
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|
2173 |
|
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18
diff
changeset
|
2174 truth = Image.open(GetDatabasePath('Formats/SignedCT.png')) |
|
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18
diff
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|
2175 self.AssertSameImages(truth.getdata(), '/instances/%s/image-int16' % signed) |
|
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parents:
18
diff
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|
2176 |
|
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18
diff
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|
2177 truth2 = map(lambda x: 0 if x >= 32768 else x, truth.getdata()) |
|
2a29bcff60a7
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18
diff
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|
2178 self.AssertSameImages(truth2, '/instances/%s/image-uint16' % signed) |
|
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18
diff
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|
2179 |
|
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18
diff
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|
2180 truth3 = map(lambda x: 255 if x >= 256 else x, truth2) |
|
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parents:
18
diff
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|
2181 self.AssertSameImages(truth3, '/instances/%s/image-uint8' % signed) |
|
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18
diff
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|
2182 |
|
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18
diff
changeset
|
2183 tmp = map(lambda x: x - 65536 if x >= 32768 else x, truth.getdata()) |
|
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parents:
18
diff
changeset
|
2184 tmp = map(lambda x: (255.0 * (x - minValue)) / (maxValue - minValue), tmp) |
|
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parents:
18
diff
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|
2185 self.AssertSameImages(tmp, '/instances/%s/preview' % signed) |
|
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18
diff
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|
2186 |
|
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18
diff
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|
2187 self.assertEqual('b57e6c872a3da50877c7da689b03a444', ComputeMD5(DoGet(_REMOTE, '/instances/%s/matlab' % signed))) |
| 22 | 2188 |
| 2189 | |
|
46
85b2e36ed392
explicit GoogleCode source
Sebastien Jodogne <s.jodogne@gmail.com>
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diff
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|
2190 def test_googlecode_issue_32(self): |
|
92
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diff
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|
2191 self.assertRaises(Exception, lambda: DoPut(_REMOTE, '/tools/default-encoding', 'nope')) |
|
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diff
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|
2192 self.assertEqual('Windows1251', DoPut(_REMOTE, '/tools/default-encoding', 'Windows1251')) |
|
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|
2193 self.assertEqual('Windows1251', DoGet(_REMOTE, '/tools/default-encoding')) |
|
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|
2194 |
| 22 | 2195 f = UploadInstance(_REMOTE, 'Issue32.dcm')['ID'] |
| 2196 tags = DoGet(_REMOTE, '/instances/%s/tags?simplify' % f) | |
| 2197 self.assertEqual(u'Рентгенография', tags['SeriesDescription']) | |
| 2198 self.assertEqual(u'Таз', tags['BodyPartExamined']) | |
| 2199 self.assertEqual(u'Прямая', tags['ViewPosition']) | |
| 2200 | |
|
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|
2201 # Replay the same test using Latin1 as default encoding: This must fail |
|
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|
2202 self.assertEqual('Latin1', DoPut(_REMOTE, '/tools/default-encoding', 'Latin1')) |
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2203 |
|
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|
2204 DoDelete(_REMOTE, '/instances/%s' % f) |
|
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|
2205 f = UploadInstance(_REMOTE, 'Issue32.dcm')['ID'] |
|
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|
2206 tags = DoGet(_REMOTE, '/instances/%s/tags?simplify' % f) |
|
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|
2207 self.assertNotEqual(u'Рентгенография', tags['SeriesDescription']) |
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2208 |
|
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|
2209 |
| 22 | 2210 def test_encodings(self): |
| 23 | 2211 # Latin-1 (ISO_IR 100) |
| 22 | 2212 brainix = UploadInstance(_REMOTE, 'Brainix/Epi/IM-0001-0001.dcm')['ID'] |
| 2213 tags = DoGet(_REMOTE, '/instances/%s/tags?simplify' % brainix) | |
| 2214 self.assertEqual(u'IRM cérébrale, neuro-crâne', tags['StudyDescription']) | |
| 23 | 2215 |
| 2216 # Latin-2 (ISO_IR 101) | |
| 2217 a = UploadInstance(_REMOTE, 'MarekLatin2.dcm')['ID'] | |
| 2218 i = DoGet(_REMOTE, '/instances/%s/simplified-tags' % a) | |
| 2219 # dcm2xml MarekLatin2.dcm | iconv -f latin2 -t utf-8 | xmllint --format - | |
| 2220 self.assertEqual('Imię i Nazwisko osoby opisującej', | |
| 2221 i['ContentSequence'][4]['ConceptNameCodeSequence'][0]['CodeMeaning'].encode('utf-8')) | |
| 2222 | |
|
26
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|
2223 |
|
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diff
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|
2224 def test_storescu_custom_aet(self): |
|
040f6ef1394a
test_storescu_custom_aet
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diff
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|
2225 # This tests a feature introduced in Orthanc 0.9.1: "Custom |
|
040f6ef1394a
test_storescu_custom_aet
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diff
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|
2226 # setting of the local AET during C-Store SCU (both in Lua and |
|
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diff
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|
2227 # in the REST API)." |
|
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test_storescu_custom_aet
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diff
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|
2228 # https://groups.google.com/forum/#!msg/orthanc-users/o5qMULformU/wZjW2iSaMcAJ |
|
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diff
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|
2229 |
|
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test_storescu_custom_aet
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diff
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|
2230 self.assertEqual(0, len(DoGet(_LOCAL, '/patients'))) |
|
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2231 |
|
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|
2232 a = UploadInstance(_REMOTE, 'Knee/T1/IM-0001-0001.dcm') |
|
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|
2233 b = UploadInstance(_REMOTE, 'Knee/T1/IM-0001-0002.dcm') |
|
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diff
changeset
|
2234 c = UploadInstance(_REMOTE, 'Knee/T1/IM-0001-0003.dcm') |
|
040f6ef1394a
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|
2235 |
|
040f6ef1394a
test_storescu_custom_aet
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|
2236 j = DoPost(_REMOTE, '/modalities/orthanctest/store', { |
|
040f6ef1394a
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|
2237 'LocalAet' : 'YOP', |
|
040f6ef1394a
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diff
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|
2238 'Resources' : [ a['ID'], b['ID'] ] |
|
040f6ef1394a
test_storescu_custom_aet
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diff
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|
2239 }) |
|
040f6ef1394a
test_storescu_custom_aet
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diff
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|
2240 |
|
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diff
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|
2241 self.assertEqual(2, len(DoGet(_LOCAL, '/instances'))) |
|
040f6ef1394a
test_storescu_custom_aet
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diff
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|
2242 self.assertEqual('YOP', DoGet(_LOCAL, '/instances/%s/metadata/RemoteAET' % a['ID'])) |
|
040f6ef1394a
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|
2243 |
|
040f6ef1394a
test_storescu_custom_aet
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diff
changeset
|
2244 DropOrthanc(_LOCAL) |
|
040f6ef1394a
test_storescu_custom_aet
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diff
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|
2245 self.assertEqual(0, len(DoGet(_LOCAL, '/instances'))) |
|
040f6ef1394a
test_storescu_custom_aet
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diff
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|
2246 |
|
040f6ef1394a
test_storescu_custom_aet
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|
2247 j = DoPost(_REMOTE, '/modalities/orthanctest/store', { |
|
040f6ef1394a
test_storescu_custom_aet
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diff
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|
2248 'Resources' : [ c['ID'] ] |
|
040f6ef1394a
test_storescu_custom_aet
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diff
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|
2249 }) |
|
040f6ef1394a
test_storescu_custom_aet
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diff
changeset
|
2250 |
|
040f6ef1394a
test_storescu_custom_aet
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diff
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|
2251 self.assertEqual(1, len(DoGet(_LOCAL, '/instances'))) |
|
040f6ef1394a
test_storescu_custom_aet
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diff
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|
2252 self.assertEqual('ORTHANC', DoGet(_LOCAL, '/instances/%s/metadata/RemoteAET' % c['ID'])) |
|
040f6ef1394a
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|
2253 |
|
040f6ef1394a
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|
2254 DropOrthanc(_REMOTE) |
|
040f6ef1394a
test_storescu_custom_aet
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|
2255 DropOrthanc(_LOCAL) |
|
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|
2256 |
| 174 | 2257 InstallLuaScriptFromPath(_REMOTE, 'Lua/AutoroutingChangeAet.lua') |
|
26
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|
2258 DoPost(_REMOTE, '/tools/execute-script', 'aet = "HELLO"', 'application/lua') |
|
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diff
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|
2259 |
|
040f6ef1394a
test_storescu_custom_aet
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diff
changeset
|
2260 self.assertEqual(0, len(DoGet(_LOCAL, '/instances'))) |
|
040f6ef1394a
test_storescu_custom_aet
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|
2261 UploadInstance(_REMOTE, 'Knee/T1/IM-0001-0001.dcm') |
|
040f6ef1394a
test_storescu_custom_aet
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|
2262 WaitEmpty(_REMOTE) |
|
040f6ef1394a
test_storescu_custom_aet
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|
2263 self.assertEqual(1, len(DoGet(_LOCAL, '/instances'))) |
|
040f6ef1394a
test_storescu_custom_aet
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|
2264 self.assertEqual('HELLO', DoGet(_LOCAL, '/instances/%s/metadata/RemoteAET' % a['ID'])) |
|
040f6ef1394a
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|
2265 |
|
040f6ef1394a
test_storescu_custom_aet
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|
2266 DoPost(_REMOTE, '/tools/execute-script', 'aet = nill', 'application/lua') |
|
040f6ef1394a
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|
2267 UploadInstance(_REMOTE, 'Knee/T1/IM-0001-0002.dcm') |
|
040f6ef1394a
test_storescu_custom_aet
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|
2268 WaitEmpty(_REMOTE) |
|
040f6ef1394a
test_storescu_custom_aet
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|
2269 self.assertEqual(2, len(DoGet(_LOCAL, '/instances'))) |
|
040f6ef1394a
test_storescu_custom_aet
Sebastien Jodogne <s.jodogne@gmail.com>
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|
2270 self.assertEqual('ORTHANC', DoGet(_LOCAL, '/instances/%s/metadata/RemoteAET' % b['ID'])) |
|
34
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2271 |
|
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|
2272 def test_resources_since_limit(self): |
|
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2273 # Upload 16 instances |
|
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|
2274 for i in range(4): |
|
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|
2275 UploadInstance(_REMOTE, 'Brainix/Flair/IM-0001-000%d.dcm' % (i + 1)) |
|
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|
2276 UploadInstance(_REMOTE, 'Brainix/Epi/IM-0001-000%d.dcm' % (i + 1)) |
|
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|
2277 UploadInstance(_REMOTE, 'Knee/T1/IM-0001-000%d.dcm' % (i + 1)) |
|
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|
2278 UploadInstance(_REMOTE, 'Knee/T2/IM-0001-000%d.dcm' % (i + 1)) |
|
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|
2279 |
|
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|
2280 self.assertEqual(2, len(DoGet(_REMOTE, '/patients'))) |
|
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|
2281 self.assertEqual(2, len(DoGet(_REMOTE, '/studies'))) |
|
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|
2282 self.assertEqual(4, len(DoGet(_REMOTE, '/series'))) |
|
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|
2283 self.assertEqual(16, len(DoGet(_REMOTE, '/instances'))) |
|
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|
2284 |
|
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|
2285 self.assertRaises(Exception, lambda: DoGet(_REMOTE, '/patients&since=10' % i)) |
|
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|
2286 self.assertRaises(Exception, lambda: DoGet(_REMOTE, '/patients&limit=10' % i)) |
|
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|
2287 |
|
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|
2288 self.assertEqual(0, len(DoGet(_REMOTE, '/patients?since=0&limit=0'))) |
|
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|
2289 self.assertEqual(2, len(DoGet(_REMOTE, '/patients?since=0&limit=100'))) |
|
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|
2290 self.assertEqual(2, len(DoGet(_REMOTE, '/studies?since=0&limit=100'))) |
|
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changeset
|
2291 self.assertEqual(4, len(DoGet(_REMOTE, '/series?since=0&limit=100'))) |
|
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changeset
|
2292 self.assertEqual(16, len(DoGet(_REMOTE, '/instances?since=0&limit=100'))) |
|
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changeset
|
2293 self.assertEqual(1, len(DoGet(_REMOTE, '/patients?since=1&limit=100'))) |
|
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changeset
|
2294 self.assertEqual(0, len(DoGet(_REMOTE, '/patients?since=2&limit=100'))) |
|
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|
2295 self.assertEqual(0, len(DoGet(_REMOTE, '/patients?since=3&limit=100'))) |
|
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changeset
|
2296 self.assertEqual(1, len(DoGet(_REMOTE, '/studies?since=1&limit=100'))) |
|
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|
2297 self.assertEqual(3, len(DoGet(_REMOTE, '/series?since=1&limit=100'))) |
|
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changeset
|
2298 self.assertEqual(2, len(DoGet(_REMOTE, '/series?since=2&limit=100'))) |
|
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|
2299 self.assertEqual(1, len(DoGet(_REMOTE, '/series?since=3&limit=100'))) |
|
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|
2300 self.assertEqual(0, len(DoGet(_REMOTE, '/series?since=4&limit=100'))) |
|
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|
2301 self.assertEqual(0, len(DoGet(_REMOTE, '/series?since=100&limit=100'))) |
|
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|
2302 self.assertEqual(15, len(DoGet(_REMOTE, '/instances?since=1&limit=100'))) |
|
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|
2303 |
|
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|
2304 for limit in [ 1, 2, 3, 7, 16, 17 ]: |
|
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|
2305 s = {} |
|
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|
2306 since = 0 |
|
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|
2307 while True: |
|
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changeset
|
2308 t = DoGet(_REMOTE, '/instances?since=%d&limit=%d' % (since, limit)) |
|
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|
2309 if len(t) == 0: |
|
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|
2310 break |
|
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changeset
|
2311 |
|
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|
2312 since += len(t) |
|
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|
2313 for i in t: |
|
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|
2314 s[i] = None |
|
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|
2315 |
|
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|
2316 self.assertEqual(16, len(s)) |
|
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|
2317 for instance in DoGet(_REMOTE, '/instances'): |
|
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|
2318 self.assertTrue(instance in s) |
| 36 | 2319 |
| 2320 | |
| 2321 def test_create_pdf(self): | |
| 2322 # Upload 4 instances | |
| 2323 brainixInstance = UploadInstance(_REMOTE, 'Brainix/Flair/IM-0001-0001.dcm')['ID'] | |
| 2324 UploadInstance(_REMOTE, 'Brainix/Epi/IM-0001-0001.dcm') | |
| 2325 UploadInstance(_REMOTE, 'Knee/T1/IM-0001-0001.dcm') | |
| 2326 UploadInstance(_REMOTE, 'Knee/T2/IM-0001-0001.dcm') | |
| 2327 | |
| 2328 brainixPatient = '16738bc3-e47ed42a-43ce044c-a3414a45-cb069bd0' | |
| 2329 brainixStudy = '27f7126f-4f66fb14-03f4081b-f9341db2-53925988' | |
| 2330 brainixEpi = '2ac1316d-3e432022-62eabff2-c59f5475-9b1ac3f8' | |
| 2331 | |
| 2332 with open(GetDatabasePath('HelloWorld.pdf'), 'rb') as f: | |
| 2333 pdf = f.read() | |
| 2334 | |
| 2335 i = DoPost(_REMOTE, '/tools/create-dicom', | |
| 2336 json.dumps({ | |
| 2337 'Tags' : { | |
| 2338 'PatientName' : 'Jodogne', | |
| 2339 'Modality' : 'CT', | |
| 2340 }, | |
| 2341 'Content' : 'data:application/pdf;base64,' + base64.b64encode(pdf) | |
| 2342 })) | |
| 2343 | |
| 2344 self.assertEqual('Jodogne', DoGet(_REMOTE, '/instances/%s/content/PatientName' % i['ID']).strip()) | |
| 2345 self.assertEqual('OT', DoGet(_REMOTE, '/instances/%s/content/Modality' % i['ID']).strip()) | |
| 2346 | |
| 2347 b = DoGet(_REMOTE, '/instances/%s/content/0042-0011' % i['ID']) | |
| 2348 self.assertEqual(len(b), len(pdf) + 1) | |
| 2349 self.assertEqual(ComputeMD5(b), ComputeMD5(pdf + '\0')) | |
| 2350 | |
| 2351 self.assertRaises(Exception, lambda: DoPost(_REMOTE, '/tools/create-dicom', | |
| 2352 json.dumps({ | |
| 2353 'Parent' : brainixPatient, | |
| 2354 'Tags' : { | |
| 2355 'PatientName' : 'Jodogne', | |
| 2356 } | |
| 2357 }))) | |
| 2358 | |
| 2359 i = DoPost(_REMOTE, '/tools/create-dicom', | |
| 2360 json.dumps({ | |
| 2361 'Parent' : brainixPatient, | |
| 2362 'Tags' : { 'StudyDescription' : 'PDF^Patient' }, | |
| 2363 'Content' : 'data:application/pdf;base64,' + base64.b64encode(pdf) | |
| 2364 })) | |
| 2365 | |
| 2366 self.assertEqual(brainixPatient, DoGet(_REMOTE, '/instances/%s/patient' % i['ID'])['ID']) | |
| 2367 | |
| 2368 i = DoPost(_REMOTE, '/tools/create-dicom', | |
| 2369 json.dumps({ | |
| 2370 'Parent' : brainixStudy, | |
| 2371 'Tags' : { 'SeriesDescription' : 'PDF^Study' }, | |
| 2372 'Content' : 'data:application/pdf;base64,' + base64.b64encode(pdf) | |
| 2373 })) | |
| 2374 | |
| 2375 self.assertEqual(brainixStudy, DoGet(_REMOTE, '/instances/%s/study' % i['ID'])['ID']) | |
| 2376 | |
| 2377 i = DoPost(_REMOTE, '/tools/create-dicom', | |
| 2378 json.dumps({ | |
| 2379 'Parent' : brainixEpi, | |
| 37 | 2380 'Tags' : { 'SpecificCharacterSet' : 'ISO_IR 13' }, |
| 36 | 2381 'Content' : 'data:application/pdf;base64,' + base64.b64encode(pdf) |
| 2382 })) | |
| 2383 | |
| 2384 self.assertEqual(brainixEpi, DoGet(_REMOTE, '/instances/%s/series' % i['ID'])['ID']) | |
| 2385 | |
| 2386 b = DoGet(_REMOTE, '/instances/%s/pdf' % i['ID']) | |
| 2387 self.assertEqual(len(b), len(pdf)) | |
| 2388 self.assertEqual(ComputeMD5(b), ComputeMD5(pdf)) | |
| 2389 | |
| 2390 self.assertRaises(Exception, lambda: DoGet(_REMOTE, '/instances/%s/pdf' % brainixInstance)) | |
| 38 | 2391 |
| 2392 | |
| 2393 def test_create_series(self): | |
| 2394 i = DoPost(_REMOTE, '/tools/create-dicom', | |
| 2395 json.dumps({ | |
| 2396 'Tags' : { | |
| 40 | 2397 'SpecificCharacterSet' : 'ISO_IR 100', |
| 2398 'PatientName' : 'Sébastien Jodogne', | |
| 38 | 2399 'Modality' : 'CT', |
| 2400 }, | |
| 2401 'Content' : [ | |
| 40 | 2402 { |
| 2403 'Content': 'data:image/png;base64,iVBORw0KGgoAAAANSUhEUgAAAAUAAAAFCAYAAACNbyblAAAAHElEQVQI12P4//8/w38GIAXDIBKE0DHxgljNBAAO9TXL0Y4OHwAAAABJRU5ErkJggg==', # red dot in RGBA | |
| 2404 'Tags' : { 'ImageComments' : 'Tutu' } | |
| 2405 }, | |
| 38 | 2406 'data:image/png;base64,iVBORw0KGgoAAAANSUhEUgAAABAAAAAQCAYAAAAf8/9hAAAAoUlEQVQ4jZ2SWw3EIBREjwUsYAELa2EtoAULFUCyXAtroRZqoRbox254BdLC/DZnZjoXWJFgCDg8egW2CBEhEnDzyRk+Ecxz2KP/0AL8S99T+jQccAVs22qKwAuPuq0uyNg9cPLh3am+pe/dkHLZtqJHj6vXJrZ7nvzvxxgemXgUwnGfXqpee09mUwp8m022OYP6bLF7mVuVe0y/umxinsAXRd9z0k1ubWsAAAAASUVORK5CYII=', |
| 2407 ] | |
| 2408 })) | |
| 2409 | |
| 2410 s = DoGet(_REMOTE, i['Path']) | |
| 2411 self.assertEqual('Series', s['Type']) | |
| 2412 self.assertEqual(s['ID'], i['ID']) | |
| 2413 self.assertEqual(2, len(s['Instances'])) | |
| 39 | 2414 self.assertEqual(2, s['ExpectedNumberOfInstances']) |
| 2415 self.assertEqual('Complete', s['Status']) | |
| 40 | 2416 |
| 2417 a = DoGet(_REMOTE, '/instances/%s/tags?simplify' % s['Instances'][0]) | |
| 2418 b = DoGet(_REMOTE, '/instances/%s/tags?simplify' % s['Instances'][1]) | |
| 2419 self.assertTrue('ImageComments' in a or 'ImageComments' in b) | |
| 2420 if 'ImageComments' in a: | |
| 2421 self.assertEqual('Tutu', a['ImageComments']) | |
| 2422 else: | |
| 2423 self.assertEqual('Tutu', b['ImageComments']) | |
| 2424 | |
| 2425 patient = DoGet(_REMOTE, '/instances/%s/patient' % s['Instances'][0]) | |
| 2426 self.assertEqual(patient['MainDicomTags']['PatientName'].encode('utf-8'), | |
| 2427 'Sébastien Jodogne') | |
| 47 | 2428 |
| 2429 | |
| 2430 def test_create_binary(self): | |
| 2431 binary = ''.join(map(chr, range(256))) | |
| 2432 encoded = 'data:application/octet-stream;base64,' + base64.b64encode(binary) | |
| 2433 tags = { | |
| 2434 'PatientName' : 'Jodogne', | |
| 2435 '8899-8899' : encoded | |
| 2436 } | |
| 2437 | |
| 2438 i = DoPost(_REMOTE, '/tools/create-dicom', | |
| 2439 json.dumps({ | |
| 2440 'Tags' : tags | |
| 2441 })) | |
| 2442 | |
| 2443 self.assertEqual('Jodogne', DoGet(_REMOTE, '/instances/%s/content/PatientName' % i['ID']).strip()) | |
| 2444 self.assertEqual(binary, DoGet(_REMOTE, '/instances/%s/content/8899-8899' % i['ID']).strip()) | |
| 2445 | |
| 2446 i = DoPost(_REMOTE, '/tools/create-dicom', | |
| 2447 json.dumps({ | |
| 2448 'InterpretBinaryTags' : False, | |
| 2449 'Tags' : tags | |
| 2450 })) | |
| 2451 | |
| 2452 self.assertEqual('Jodogne', DoGet(_REMOTE, '/instances/%s/content/PatientName' % i['ID']).strip()) | |
| 2453 self.assertEqual(encoded, DoGet(_REMOTE, '/instances/%s/content/8899-8899' % i['ID'])[0:-1]) | |
|
48
e4352463ff74
test_patient_ids_collision
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
47
diff
changeset
|
2454 |
|
e4352463ff74
test_patient_ids_collision
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
47
diff
changeset
|
2455 |
|
e4352463ff74
test_patient_ids_collision
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
47
diff
changeset
|
2456 def test_patient_ids_collision(self): |
|
e4352463ff74
test_patient_ids_collision
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
47
diff
changeset
|
2457 # Upload 3 instances from 3 different studies, but with the |
|
e4352463ff74
test_patient_ids_collision
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
47
diff
changeset
|
2458 # same PatientID |
|
e4352463ff74
test_patient_ids_collision
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
47
diff
changeset
|
2459 for i in range(3): |
|
e4352463ff74
test_patient_ids_collision
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
47
diff
changeset
|
2460 UploadInstance(_REMOTE, 'PatientIdsCollision/Image%d.dcm' % (i + 1)) |
|
e4352463ff74
test_patient_ids_collision
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
47
diff
changeset
|
2461 |
|
e4352463ff74
test_patient_ids_collision
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
47
diff
changeset
|
2462 a = DoPost(_REMOTE, '/tools/find', { 'Level' : 'Patient', |
|
e4352463ff74
test_patient_ids_collision
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
47
diff
changeset
|
2463 'Query' : { 'PatientName' : '*' }}) |
|
e4352463ff74
test_patient_ids_collision
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
47
diff
changeset
|
2464 self.assertEqual(1, len(a)) |
|
e4352463ff74
test_patient_ids_collision
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
47
diff
changeset
|
2465 self.assertEqual('COMMON', DoGet(_REMOTE, '/patients/%s' % a[0]) ['MainDicomTags']['PatientID']) |
|
e4352463ff74
test_patient_ids_collision
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
47
diff
changeset
|
2466 |
|
e4352463ff74
test_patient_ids_collision
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
47
diff
changeset
|
2467 a = DoPost(_REMOTE, '/tools/find', { 'Level' : 'Study', |
|
e4352463ff74
test_patient_ids_collision
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
47
diff
changeset
|
2468 'CaseSensitive' : True, |
|
e4352463ff74
test_patient_ids_collision
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
47
diff
changeset
|
2469 'Query' : { 'PatientName' : 'FOO\\HELLO' }}) |
|
e4352463ff74
test_patient_ids_collision
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
47
diff
changeset
|
2470 self.assertEqual(2, len(a)) |
|
e4352463ff74
test_patient_ids_collision
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
47
diff
changeset
|
2471 |
|
e4352463ff74
test_patient_ids_collision
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
47
diff
changeset
|
2472 a = DoPost(_REMOTE, '/tools/find', { 'Level' : 'Series', |
|
e4352463ff74
test_patient_ids_collision
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
47
diff
changeset
|
2473 'CaseSensitive' : False, |
|
e4352463ff74
test_patient_ids_collision
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
47
diff
changeset
|
2474 'Query' : { 'PatientName' : 'Foo' }}) |
|
e4352463ff74
test_patient_ids_collision
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
47
diff
changeset
|
2475 self.assertEqual(1, len(a)) |
|
e4352463ff74
test_patient_ids_collision
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
47
diff
changeset
|
2476 self.assertEqual('FOO^SERIES', DoGet(_REMOTE, '/series/%s/study' % a[0]) ['MainDicomTags']['StudyDescription']) |
|
e4352463ff74
test_patient_ids_collision
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
47
diff
changeset
|
2477 self.assertEqual('FOO', DoGet(_REMOTE, '/series/%s/study' % a[0]) ['PatientMainDicomTags']['PatientName']) |
|
e4352463ff74
test_patient_ids_collision
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
47
diff
changeset
|
2478 self.assertEqual('COMMON', DoGet(_REMOTE, '/series/%s/study' % a[0]) ['PatientMainDicomTags']['PatientID']) |
|
e4352463ff74
test_patient_ids_collision
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
47
diff
changeset
|
2479 |
|
e4352463ff74
test_patient_ids_collision
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
47
diff
changeset
|
2480 a = DoPost(_REMOTE, '/tools/find', { 'Level' : 'Study', |
|
e4352463ff74
test_patient_ids_collision
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
47
diff
changeset
|
2481 'Query' : { 'PatientName' : '*' }}) |
|
e4352463ff74
test_patient_ids_collision
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
47
diff
changeset
|
2482 self.assertEqual(3, len(a)) |
|
e4352463ff74
test_patient_ids_collision
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
47
diff
changeset
|
2483 d = map(lambda x: DoGet(_REMOTE, '/studies/%s' % x) ['MainDicomTags']['StudyDescription'], a) |
|
e4352463ff74
test_patient_ids_collision
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
47
diff
changeset
|
2484 self.assertTrue('FOO^SERIES' in d) |
|
e4352463ff74
test_patient_ids_collision
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
47
diff
changeset
|
2485 self.assertTrue('HELLO^SERIES' in d) |
|
e4352463ff74
test_patient_ids_collision
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
47
diff
changeset
|
2486 self.assertTrue('WORLD^SERIES' in d) |
|
e4352463ff74
test_patient_ids_collision
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
47
diff
changeset
|
2487 |
|
e4352463ff74
test_patient_ids_collision
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
47
diff
changeset
|
2488 d = map(lambda x: DoGet(_REMOTE, '/studies/%s' % x) ['PatientMainDicomTags']['PatientID'], a) |
|
e4352463ff74
test_patient_ids_collision
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
47
diff
changeset
|
2489 self.assertEqual(1, len(set(d))) |
|
e4352463ff74
test_patient_ids_collision
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
47
diff
changeset
|
2490 self.assertEqual('COMMON', d[0]) |
|
e4352463ff74
test_patient_ids_collision
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
47
diff
changeset
|
2491 |
|
e4352463ff74
test_patient_ids_collision
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
47
diff
changeset
|
2492 for i in a: |
|
e4352463ff74
test_patient_ids_collision
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
47
diff
changeset
|
2493 d = DoGet(_REMOTE, '/studies/%s' % i) ['MainDicomTags']['StudyDescription'] |
|
e4352463ff74
test_patient_ids_collision
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
47
diff
changeset
|
2494 p = DoGet(_REMOTE, '/studies/%s' % i) ['PatientMainDicomTags']['PatientName'] |
|
e4352463ff74
test_patient_ids_collision
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
47
diff
changeset
|
2495 self.assertEqual('%s^SERIES' % p, d) |
|
49
e7f9b8199545
test_bitbucket_issue_4
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
48
diff
changeset
|
2496 |
|
e7f9b8199545
test_bitbucket_issue_4
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
48
diff
changeset
|
2497 |
|
e7f9b8199545
test_bitbucket_issue_4
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
48
diff
changeset
|
2498 def test_bitbucket_issue_4(self): |
|
e7f9b8199545
test_bitbucket_issue_4
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
48
diff
changeset
|
2499 UploadInstance(_REMOTE, 'Brainix/Epi/IM-0001-0001.dcm') |
|
e7f9b8199545
test_bitbucket_issue_4
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
48
diff
changeset
|
2500 UploadInstance(_REMOTE, 'Brainix/Epi/IM-0001-0002.dcm') |
|
e7f9b8199545
test_bitbucket_issue_4
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
48
diff
changeset
|
2501 UploadInstance(_REMOTE, 'Brainix/Epi/IM-0001-0003.dcm') |
|
e7f9b8199545
test_bitbucket_issue_4
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
48
diff
changeset
|
2502 UploadInstance(_REMOTE, 'Formats/Jpeg.dcm') |
|
e7f9b8199545
test_bitbucket_issue_4
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
48
diff
changeset
|
2503 UploadInstance(_REMOTE, 'Formats/JpegLossless.dcm') |
|
e7f9b8199545
test_bitbucket_issue_4
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
48
diff
changeset
|
2504 UploadInstance(_REMOTE, 'Formats/Rle.dcm') |
|
e7f9b8199545
test_bitbucket_issue_4
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
48
diff
changeset
|
2505 |
|
e7f9b8199545
test_bitbucket_issue_4
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
48
diff
changeset
|
2506 self.assertEqual(0, len(DoGet(_LOCAL, '/instances'))) |
|
e7f9b8199545
test_bitbucket_issue_4
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
48
diff
changeset
|
2507 self.assertEqual(6, len(DoGet(_REMOTE, '/instances'))) |
|
e7f9b8199545
test_bitbucket_issue_4
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
48
diff
changeset
|
2508 |
|
e7f9b8199545
test_bitbucket_issue_4
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
48
diff
changeset
|
2509 p = DoGet(_REMOTE, '/patients') |
|
e7f9b8199545
test_bitbucket_issue_4
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
48
diff
changeset
|
2510 self.assertEqual(2, len(p)) |
|
e7f9b8199545
test_bitbucket_issue_4
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
48
diff
changeset
|
2511 i1 = map(lambda x: x['ID'], DoGet(_REMOTE, '/patients/%s/instances' % p[0])) |
|
e7f9b8199545
test_bitbucket_issue_4
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
48
diff
changeset
|
2512 i2 = map(lambda x: x['ID'], DoGet(_REMOTE, '/patients/%s/instances' % p[1])) |
|
e7f9b8199545
test_bitbucket_issue_4
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
48
diff
changeset
|
2513 self.assertEqual(3, len(i1)) |
|
e7f9b8199545
test_bitbucket_issue_4
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
48
diff
changeset
|
2514 self.assertEqual(3, len(i2)) |
|
e7f9b8199545
test_bitbucket_issue_4
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
48
diff
changeset
|
2515 |
|
e7f9b8199545
test_bitbucket_issue_4
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
48
diff
changeset
|
2516 j = DoPost(_REMOTE, '/modalities/orthanctest/store', i2[0:1] + i1 + i2[1:3]) |
|
e7f9b8199545
test_bitbucket_issue_4
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
48
diff
changeset
|
2517 |
|
e7f9b8199545
test_bitbucket_issue_4
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
48
diff
changeset
|
2518 self.assertEqual(6, len(DoGet(_LOCAL, '/instances'))) |
|
50
8de63d56cf11
test_create_sequence
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
49
diff
changeset
|
2519 |
|
8de63d56cf11
test_create_sequence
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
49
diff
changeset
|
2520 |
|
8de63d56cf11
test_create_sequence
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
49
diff
changeset
|
2521 def test_create_sequence(self): |
|
8de63d56cf11
test_create_sequence
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
49
diff
changeset
|
2522 i = DoPost(_REMOTE, '/tools/create-dicom', |
|
8de63d56cf11
test_create_sequence
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
49
diff
changeset
|
2523 json.dumps({ |
|
8de63d56cf11
test_create_sequence
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
49
diff
changeset
|
2524 'Tags' : { |
|
8de63d56cf11
test_create_sequence
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
49
diff
changeset
|
2525 'SpecificCharacterSet': 'ISO_IR 100', # Encode using Latin1 |
|
8de63d56cf11
test_create_sequence
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
49
diff
changeset
|
2526 'PatientName': 'Jodogne^', |
|
51
264a20a0276d
test_modify_sequence
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
50
diff
changeset
|
2527 'ReferencedStudySequence': GenerateTestSequence(), |
|
50
8de63d56cf11
test_create_sequence
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
49
diff
changeset
|
2528 } |
|
8de63d56cf11
test_create_sequence
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
49
diff
changeset
|
2529 }))['ID'] |
|
8de63d56cf11
test_create_sequence
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
49
diff
changeset
|
2530 |
|
8de63d56cf11
test_create_sequence
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
49
diff
changeset
|
2531 self.assertEqual('Jodogne^', DoGet(_REMOTE, '/instances/%s/content/PatientName' % i)) |
|
8de63d56cf11
test_create_sequence
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
49
diff
changeset
|
2532 self.assertEqual('Hello^', DoGet(_REMOTE, '/instances/%s/content/ReferencedStudySequence/0/StudyDescription' % i)) |
|
8de63d56cf11
test_create_sequence
Sebastien Jodogne <s.jodogne@gmail.com>
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49
diff
changeset
|
2533 self.assertEqual('Toto', DoGet(_REMOTE, '/instances/%s/content/ReferencedStudySequence/0/ReferencedStudySequence/0/StudyDescription' % i)) |
|
8de63d56cf11
test_create_sequence
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
49
diff
changeset
|
2534 self.assertEqual('Tata', DoGet(_REMOTE, '/instances/%s/content/ReferencedStudySequence/0/ReferencedStudySequence/1/StudyDescription' % i)) |
|
8de63d56cf11
test_create_sequence
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
49
diff
changeset
|
2535 self.assertEqual(u'Sébastien^'.encode('latin-1'), |
|
8de63d56cf11
test_create_sequence
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
49
diff
changeset
|
2536 DoGet(_REMOTE, '/instances/%s/content/ReferencedStudySequence/1/StudyDescription' % i)) |
|
51
264a20a0276d
test_modify_sequence
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
50
diff
changeset
|
2537 |
|
264a20a0276d
test_modify_sequence
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
50
diff
changeset
|
2538 |
|
264a20a0276d
test_modify_sequence
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
50
diff
changeset
|
2539 def test_modify_sequence(self): |
|
264a20a0276d
test_modify_sequence
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
50
diff
changeset
|
2540 i = UploadInstance(_REMOTE, 'PrivateTags.dcm')['ID'] |
|
264a20a0276d
test_modify_sequence
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
50
diff
changeset
|
2541 self.assertRaises(Exception, lambda: DoGet(_REMOTE, '/instances/%s/content/ReferencedStudySequence' % i)) |
|
264a20a0276d
test_modify_sequence
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
50
diff
changeset
|
2542 |
|
264a20a0276d
test_modify_sequence
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
50
diff
changeset
|
2543 j = DoPost(_REMOTE, '/instances/%s/modify' % i, |
|
264a20a0276d
test_modify_sequence
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
50
diff
changeset
|
2544 json.dumps({ |
|
264a20a0276d
test_modify_sequence
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
50
diff
changeset
|
2545 "Replace" : { |
|
264a20a0276d
test_modify_sequence
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
50
diff
changeset
|
2546 "PatientName" : "hello", |
|
264a20a0276d
test_modify_sequence
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
50
diff
changeset
|
2547 'ReferencedStudySequence': GenerateTestSequence(), |
|
264a20a0276d
test_modify_sequence
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
50
diff
changeset
|
2548 }, |
|
264a20a0276d
test_modify_sequence
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
50
diff
changeset
|
2549 }), |
|
264a20a0276d
test_modify_sequence
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
50
diff
changeset
|
2550 'application/json') |
|
264a20a0276d
test_modify_sequence
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
50
diff
changeset
|
2551 j = DoPost(_REMOTE, '/instances', j, 'application/dicom')['ID'] |
|
264a20a0276d
test_modify_sequence
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
50
diff
changeset
|
2552 DoDelete(_REMOTE, '/instances/%s' % i) |
|
264a20a0276d
test_modify_sequence
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
50
diff
changeset
|
2553 |
| 52 | 2554 self.assertEqual(2, len(DoGet(_REMOTE, '/instances/%s/content/ReferencedStudySequence' % j))) |
| 2555 | |
| 2556 | |
| 2557 def test_compression(self): | |
| 2558 i = UploadInstance(_REMOTE, 'DummyCT.dcm')['ID'] | |
| 2559 | |
| 2560 data = DoGetRaw(_REMOTE, '/instances/%s/attachments/dicom-as-json/data' % i)[1] | |
| 2561 | |
| 2562 # "StorageCompression" is enabled in the Orthanc to be tested, | |
| 2563 # uncompress the data before running the test | |
| 2564 if DoGet(_REMOTE, '/instances/%s/attachments/dicom-as-json/is-compressed' % i) != 0: | |
| 2565 DoPost(_REMOTE, '/instances/%s/attachments/dicom-as-json/uncompress' % i) | |
| 2566 | |
| 2567 cs = DoGet(_REMOTE, '/statistics')['TotalDiskSize'] | |
| 2568 us = DoGet(_REMOTE, '/statistics')['TotalUncompressedSize'] | |
| 2569 size = DoGet(_REMOTE, '/instances/%s/attachments/dicom-as-json/size' % i) | |
| 2570 md5 = DoGet(_REMOTE, '/instances/%s/attachments/dicom-as-json/md5' % i) | |
| 2571 self.assertEqual(data, DoGetRaw(_REMOTE, '/instances/%s/attachments/dicom-as-json/compressed-data' % i)[1]) | |
| 2572 self.assertEqual(md5, DoGet(_REMOTE, '/instances/%s/attachments/dicom-as-json/compressed-md5' % i)) | |
| 2573 self.assertEqual(size, DoGet(_REMOTE, '/instances/%s/attachments/dicom-as-json/compressed-size' % i)) | |
| 2574 | |
| 2575 ops = DoGet(_REMOTE, '/instances/%s/attachments/dicom-as-json' % i) | |
| 2576 self.assertTrue('compress' in ops) | |
| 2577 self.assertTrue('uncompress' in ops) | |
| 2578 self.assertTrue('is-compressed' in ops) | |
| 2579 self.assertEqual(0, DoGet(_REMOTE, '/instances/%s/attachments/dicom-as-json/is-compressed' % i)) | |
| 2580 DoPost(_REMOTE, '/instances/%s/attachments/dicom-as-json/verify-md5' % i) | |
| 2581 | |
| 2582 DoPost(_REMOTE, '/instances/%s/attachments/dicom-as-json/compress' % i) | |
| 2583 DoPost(_REMOTE, '/instances/%s/attachments/dicom-as-json/verify-md5' % i) | |
| 2584 self.assertEqual(1, DoGet(_REMOTE, '/instances/%s/attachments/dicom-as-json/is-compressed' % i)) | |
| 2585 self.assertLess(cs, DoGet(_REMOTE, '/statistics')['TotalDiskSize']) | |
| 2586 self.assertEqual(us, DoGet(_REMOTE, '/statistics')['TotalUncompressedSize']) | |
| 2587 self.assertGreater(len(data), len(DoGetRaw(_REMOTE, '/instances/%s/attachments/dicom-as-json/compressed-data' % i)[1])) | |
| 2588 self.assertGreater(size, DoGet(_REMOTE, '/instances/%s/attachments/dicom-as-json/compressed-size' % i)) | |
| 2589 self.assertEqual(size, DoGet(_REMOTE, '/instances/%s/attachments/dicom-as-json/size' % i)) | |
| 2590 self.assertEqual(md5, DoGet(_REMOTE, '/instances/%s/attachments/dicom-as-json/md5' % i)) | |
| 2591 self.assertNotEqual(md5, DoGet(_REMOTE, '/instances/%s/attachments/dicom-as-json/compressed-md5' % i)) | |
| 2592 | |
| 2593 DoPost(_REMOTE, '/instances/%s/attachments/dicom-as-json/uncompress' % i) | |
| 2594 DoPost(_REMOTE, '/instances/%s/attachments/dicom-as-json/verify-md5' % i) | |
| 2595 self.assertEqual(0, DoGet(_REMOTE, '/instances/%s/attachments/dicom-as-json/is-compressed' % i)) | |
| 2596 self.assertEqual(data, DoGetRaw(_REMOTE, '/instances/%s/attachments/dicom-as-json/compressed-data' % i)[1]) | |
| 2597 self.assertEqual(size, DoGet(_REMOTE, '/instances/%s/attachments/dicom-as-json/compressed-size' % i)) | |
| 2598 self.assertEqual(size, DoGet(_REMOTE, '/instances/%s/attachments/dicom-as-json/size' % i)) | |
| 2599 self.assertEqual(md5, DoGet(_REMOTE, '/instances/%s/attachments/dicom-as-json/md5' % i)) | |
| 2600 self.assertEqual(md5, DoGet(_REMOTE, '/instances/%s/attachments/dicom-as-json/compressed-md5' % i)) | |
| 2601 self.assertEqual(cs, DoGet(_REMOTE, '/statistics')['TotalDiskSize']) | |
| 2602 self.assertEqual(us, DoGet(_REMOTE, '/statistics')['TotalUncompressedSize']) | |
| 53 | 2603 |
| 2604 | |
| 2605 def test_ordered_slices(self): | |
| 2606 i = UploadInstance(_REMOTE, 'Multiframe.dcm')['ID'] | |
| 2607 s = DoGet(_REMOTE, '/instances/%s' % i)['ParentSeries'] | |
| 2608 o = DoGet(_REMOTE, '/series/%s/ordered-slices' % s) | |
| 2609 self.assertEqual('Sequence', o['Type']) | |
| 2610 self.assertEqual(1, len(o['Dicom'])) | |
| 2611 self.assertEqual('/instances/9e05eb0a-18b6268c-e0d36085-8ddab517-3b5aec02/file', o['Dicom'][0]) | |
| 2612 self.assertEqual(76, len(o['Slices'])) | |
| 2613 for j in range(76): | |
| 2614 self.assertEqual('/instances/9e05eb0a-18b6268c-e0d36085-8ddab517-3b5aec02/frames/%d' % j, o['Slices'][j]) | |
| 2615 | |
| 68 | 2616 self.assertEqual(1, len(o['SlicesShort'])) |
| 2617 self.assertEqual('9e05eb0a-18b6268c-e0d36085-8ddab517-3b5aec02', o['SlicesShort'][0][0]) | |
| 2618 self.assertEqual(0, o['SlicesShort'][0][1]) | |
| 2619 self.assertEqual(76, o['SlicesShort'][0][2]) | |
| 2620 | |
| 53 | 2621 i = UploadInstance(_REMOTE, 'Brainix/Epi/IM-0001-0001.dcm')['ID'] |
| 2622 j = UploadInstance(_REMOTE, 'Brainix/Epi/IM-0001-0002.dcm')['ID'] | |
| 2623 k = UploadInstance(_REMOTE, 'Brainix/Epi/IM-0001-0003.dcm')['ID'] | |
| 2624 s = DoGet(_REMOTE, '/instances/%s' % i)['ParentSeries'] | |
| 2625 o = DoGet(_REMOTE, '/series/%s/ordered-slices' % s) | |
| 2626 | |
| 2627 self.assertEqual('Volume', o['Type']) | |
| 2628 self.assertEqual(3, len(o['Dicom'])) | |
| 2629 self.assertEqual(3, len(o['Slices'])) | |
| 2630 self.assertEqual('/instances/%s/file' % i, o['Dicom'][2]) | |
| 2631 self.assertEqual('/instances/%s/file' % j, o['Dicom'][1]) | |
| 2632 self.assertEqual('/instances/%s/file' % k, o['Dicom'][0]) | |
| 2633 self.assertEqual('/instances/%s/frames/0' % i, o['Slices'][2]) | |
| 2634 self.assertEqual('/instances/%s/frames/0' % j, o['Slices'][1]) | |
| 2635 self.assertEqual('/instances/%s/frames/0' % k, o['Slices'][0]) | |
| 2636 | |
| 68 | 2637 self.assertEqual(3, len(o['SlicesShort'])) |
| 2638 self.assertEqual(k, o['SlicesShort'][0][0]) | |
| 2639 self.assertEqual(0, o['SlicesShort'][0][1]) | |
| 2640 self.assertEqual(1, o['SlicesShort'][0][2]) | |
| 2641 self.assertEqual(j, o['SlicesShort'][1][0]) | |
| 2642 self.assertEqual(0, o['SlicesShort'][1][1]) | |
| 2643 self.assertEqual(1, o['SlicesShort'][1][2]) | |
| 2644 self.assertEqual(i, o['SlicesShort'][2][0]) | |
| 2645 self.assertEqual(0, o['SlicesShort'][2][1]) | |
| 2646 self.assertEqual(1, o['SlicesShort'][2][2]) | |
| 2647 | |
| 53 | 2648 i = UploadInstance(_REMOTE, 'Beaufix/IM-0001-0001.dcm')['ID'] |
| 2649 j = UploadInstance(_REMOTE, 'Beaufix/IM-0001-0002.dcm')['ID'] | |
| 2650 s = DoGet(_REMOTE, '/instances/%s' % i)['ParentSeries'] | |
| 2651 o = DoGet(_REMOTE, '/series/%s/ordered-slices' % s) | |
| 2652 | |
| 2653 self.assertEqual('Sequence', o['Type']) | |
| 2654 self.assertEqual(2, len(o['Dicom'])) | |
| 2655 self.assertEqual(2, len(o['Slices'])) | |
| 2656 self.assertEqual('/instances/%s/file' % i, o['Dicom'][0]) | |
| 2657 self.assertEqual('/instances/%s/file' % j, o['Dicom'][1]) | |
| 2658 self.assertEqual('/instances/%s/frames/0' % i, o['Slices'][0]) | |
| 2659 self.assertEqual('/instances/%s/frames/0' % j, o['Slices'][1]) | |
|
54
c5f8a6b0d85e
test_incoming_movescu_accession
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
53
diff
changeset
|
2660 |
| 68 | 2661 self.assertEqual(2, len(o['SlicesShort'])) |
| 2662 self.assertEqual(i, o['SlicesShort'][0][0]) | |
| 2663 self.assertEqual(0, o['SlicesShort'][0][1]) | |
| 2664 self.assertEqual(1, o['SlicesShort'][0][2]) | |
| 2665 self.assertEqual(j, o['SlicesShort'][1][0]) | |
| 2666 self.assertEqual(0, o['SlicesShort'][1][1]) | |
| 2667 self.assertEqual(1, o['SlicesShort'][1][2]) | |
| 2668 | |
| 2669 | |
|
54
c5f8a6b0d85e
test_incoming_movescu_accession
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
53
diff
changeset
|
2670 |
|
c5f8a6b0d85e
test_incoming_movescu_accession
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parents:
53
diff
changeset
|
2671 def test_incoming_movescu_accession(self): |
|
c5f8a6b0d85e
test_incoming_movescu_accession
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
53
diff
changeset
|
2672 UploadInstance(_REMOTE, 'Knee/T1/IM-0001-0001.dcm') |
|
c5f8a6b0d85e
test_incoming_movescu_accession
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
53
diff
changeset
|
2673 |
|
137
412d5f70447e
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parents:
136
diff
changeset
|
2674 # No matching patient, so no job is created |
|
54
c5f8a6b0d85e
test_incoming_movescu_accession
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
53
diff
changeset
|
2675 self.assertEqual(0, len(DoGet(_LOCAL, '/patients'))) |
|
c5f8a6b0d85e
test_incoming_movescu_accession
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parents:
53
diff
changeset
|
2676 CallMoveScu([ '--study', '-k', '0008,0052=STUDY', '-k', 'AccessionNumber=nope' ]) |
|
c5f8a6b0d85e
test_incoming_movescu_accession
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
53
diff
changeset
|
2677 self.assertEqual(0, len(DoGet(_LOCAL, '/patients'))) |
|
c5f8a6b0d85e
test_incoming_movescu_accession
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
53
diff
changeset
|
2678 CallMoveScu([ '--study', '-k', '0008,0052=PATIENT', '-k', 'AccessionNumber=A10003245599' ]) |
|
c5f8a6b0d85e
test_incoming_movescu_accession
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
53
diff
changeset
|
2679 self.assertEqual(0, len(DoGet(_LOCAL, '/patients'))) |
|
137
412d5f70447e
testing asynchronous c-move
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
136
diff
changeset
|
2680 |
|
412d5f70447e
testing asynchronous c-move
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
136
diff
changeset
|
2681 # 1 Matching patient, track the job |
| 138 | 2682 self.assertTrue(MonitorJob(_REMOTE, lambda: CallMoveScu([ |
| 2683 '--study', | |
| 2684 '-k', '0008,0052=STUDY', | |
| 2685 '-k', 'AccessionNumber=A10003245599' | |
| 2686 ]))) | |
|
137
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diff
changeset
|
2687 |
|
54
c5f8a6b0d85e
test_incoming_movescu_accession
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parents:
53
diff
changeset
|
2688 self.assertEqual(1, len(DoGet(_LOCAL, '/patients'))) |
|
c5f8a6b0d85e
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diff
changeset
|
2689 |
| 55 | 2690 |
| 2691 def test_dicom_to_json(self): | |
| 2692 i = UploadInstance(_REMOTE, 'PrivateMDNTags.dcm')['ID'] | |
|
60
cd3c7f70f139
test backward compatibility with Orthanc 0.9.4
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59
diff
changeset
|
2693 j = UploadInstance(_REMOTE, 'PrivateTags.dcm')['ID'] |
|
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test backward compatibility with Orthanc 0.9.4
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diff
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|
2694 |
|
cd3c7f70f139
test backward compatibility with Orthanc 0.9.4
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parents:
59
diff
changeset
|
2695 t = DoGet(_REMOTE, '/instances/%s/tags?simplify' % i) |
|
cd3c7f70f139
test backward compatibility with Orthanc 0.9.4
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diff
changeset
|
2696 with open(GetDatabasePath('PrivateMDNTagsSimplify.json'), 'r') as f: |
|
80
8466dbfcb22b
fix test against dcmtk 3.6.1
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diff
changeset
|
2697 self.assertTrue(CompareTags(t, json.loads(f.read()), [ |
| 123 | 2698 # Tags for compatibility with DCMTK 3.6.0 |
| 2699 'RETIRED_OtherPatientIDs', | |
| 2700 'OtherPatientIDs', | |
| 2701 'ACR_NEMA_2C_VariablePixelDataGroupLength', | |
|
80
8466dbfcb22b
fix test against dcmtk 3.6.1
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diff
changeset
|
2702 ])) |
| 55 | 2703 |
| 2704 t = DoGet(_REMOTE, '/instances/%s/tags' % i) | |
| 2705 with open(GetDatabasePath('PrivateMDNTagsFull.json'), 'r') as f: | |
|
87
4b24faec842b
test_reconstruct_json2 + test_private_tags
Sebastien Jodogne <s.jodogne@gmail.com>
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86
diff
changeset
|
2706 self.assertTrue(CompareTags(t, json.loads(f.read()), [ |
|
4b24faec842b
test_reconstruct_json2 + test_private_tags
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changeset
|
2707 ])) |
| 55 | 2708 |
|
60
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test backward compatibility with Orthanc 0.9.4
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diff
changeset
|
2709 t = DoGet(_REMOTE, '/instances/%s/tags?simplify' % j) |
|
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test backward compatibility with Orthanc 0.9.4
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diff
changeset
|
2710 with open(GetDatabasePath('PrivateTagsSimplify.json'), 'r') as f: |
|
80
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fix test against dcmtk 3.6.1
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|
2711 self.assertTrue(CompareTags(t, json.loads(f.read()), [ |
|
8466dbfcb22b
fix test against dcmtk 3.6.1
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|
2712 ])) |
|
60
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|
2713 |
|
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test backward compatibility with Orthanc 0.9.4
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diff
changeset
|
2714 t = DoGet(_REMOTE, '/instances/%s/tags' % j) |
|
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test backward compatibility with Orthanc 0.9.4
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diff
changeset
|
2715 with open(GetDatabasePath('PrivateTagsFull.json'), 'r') as f: |
|
cd3c7f70f139
test backward compatibility with Orthanc 0.9.4
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diff
changeset
|
2716 a = json.loads(f.read()) |
|
65
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patch for testing windows builds
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64
diff
changeset
|
2717 aa = json.dumps(a).replace('2e+022', '2e+22') |
|
09fc27e0899a
patch for testing windows builds
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64
diff
changeset
|
2718 tt = json.dumps(t).replace('2e+022', '2e+22') |
|
09fc27e0899a
patch for testing windows builds
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diff
changeset
|
2719 self.assertEqual(aa, tt) |
| 57 | 2720 |
| 2721 | |
| 2722 def test_batch_archive(self): | |
| 2723 UploadInstance(_REMOTE, 'Knee/T1/IM-0001-0001.dcm') | |
| 2724 UploadInstance(_REMOTE, 'Knee/T1/IM-0001-0002.dcm') | |
| 2725 UploadInstance(_REMOTE, 'Knee/T2/IM-0001-0001.dcm') | |
| 2726 UploadInstance(_REMOTE, 'Knee/T2/IM-0001-0002.dcm') | |
| 2727 UploadInstance(_REMOTE, 'Brainix/Epi/IM-0001-0001.dcm') | |
| 2728 UploadInstance(_REMOTE, 'Brainix/Epi/IM-0001-0002.dcm') | |
| 2729 UploadInstance(_REMOTE, 'Brainix/Flair/IM-0001-0001.dcm') | |
| 2730 UploadInstance(_REMOTE, 'Brainix/Flair/IM-0001-0002.dcm') | |
| 2731 | |
| 2732 s = DoPost(_REMOTE, '/tools/create-archive', [ ]) | |
| 2733 z = zipfile.ZipFile(StringIO(s), "r") | |
| 2734 self.assertEqual(0, len(z.namelist())) | |
| 2735 | |
| 2736 # One patient | |
| 2737 s = DoPost(_REMOTE, '/tools/create-archive', [ 'ca29faea-b6a0e17f-067743a1-8b778011-a48b2a17' ]) | |
| 2738 z = zipfile.ZipFile(StringIO(s), "r") | |
| 2739 self.assertEqual(4, len(z.namelist())) | |
| 2740 | |
| 2741 # One patient + twice its study + one series from other patient | |
| 2742 s = DoPost(_REMOTE, '/tools/create-archive', [ | |
| 2743 'ca29faea-b6a0e17f-067743a1-8b778011-a48b2a17', | |
| 2744 '0a9b3153-2512774b-2d9580de-1fc3dcf6-3bd83918', | |
| 2745 '1e2c125c-411b8e86-3f4fe68e-a7584dd3-c6da78f0' | |
| 2746 ]) | |
| 2747 z = zipfile.ZipFile(StringIO(s), "r") | |
| 2748 self.assertEqual(6, len(z.namelist())) | |
| 2749 | |
| 2750 # One patient + one series + one instance | |
| 2751 s = DoPost(_REMOTE, '/tools/create-archive', [ | |
| 2752 'ca29faea-b6a0e17f-067743a1-8b778011-a48b2a17', | |
| 2753 '1e2c125c-411b8e86-3f4fe68e-a7584dd3-c6da78f0', | |
| 2754 '1d429ccb-bdcc78a1-7d129d6a-ba4966ed-fe4dbd87' | |
| 2755 ]) | |
| 2756 z = zipfile.ZipFile(StringIO(s), "r") | |
| 2757 self.assertEqual(7, len(z.namelist())) | |
|
59
84378ada15ab
test_decode_brainix_as_jpeg
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
58
diff
changeset
|
2758 |
|
84378ada15ab
test_decode_brainix_as_jpeg
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
58
diff
changeset
|
2759 |
|
84378ada15ab
test_decode_brainix_as_jpeg
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
58
diff
changeset
|
2760 def test_decode_brainix_as_jpeg(self): |
|
84378ada15ab
test_decode_brainix_as_jpeg
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
58
diff
changeset
|
2761 i = UploadInstance(_REMOTE, 'Brainix/Epi/IM-0001-0001.dcm')['ID'] |
|
84378ada15ab
test_decode_brainix_as_jpeg
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
58
diff
changeset
|
2762 |
|
84378ada15ab
test_decode_brainix_as_jpeg
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
58
diff
changeset
|
2763 j = GetImage(_REMOTE, '/instances/%s/preview' % i) |
|
84378ada15ab
test_decode_brainix_as_jpeg
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
58
diff
changeset
|
2764 self.assertEqual('PNG', j.format) |
|
84378ada15ab
test_decode_brainix_as_jpeg
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
58
diff
changeset
|
2765 self.assertEqual(j.size[0], 256) |
|
84378ada15ab
test_decode_brainix_as_jpeg
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
58
diff
changeset
|
2766 self.assertEqual(j.size[1], 256) |
|
84378ada15ab
test_decode_brainix_as_jpeg
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
58
diff
changeset
|
2767 |
|
84378ada15ab
test_decode_brainix_as_jpeg
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
58
diff
changeset
|
2768 j = GetImage(_REMOTE, '/instances/%s/preview' % i, headers = { 'Accept' : '*/*' }) |
|
84378ada15ab
test_decode_brainix_as_jpeg
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
58
diff
changeset
|
2769 self.assertEqual('PNG', j.format) |
|
84378ada15ab
test_decode_brainix_as_jpeg
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
58
diff
changeset
|
2770 |
|
84378ada15ab
test_decode_brainix_as_jpeg
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
58
diff
changeset
|
2771 j = GetImage(_REMOTE, '/instances/%s/preview' % i, headers = { 'Accept' : 'image/*' }) |
|
84378ada15ab
test_decode_brainix_as_jpeg
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
58
diff
changeset
|
2772 self.assertEqual('PNG', j.format) |
|
84378ada15ab
test_decode_brainix_as_jpeg
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
58
diff
changeset
|
2773 |
|
84378ada15ab
test_decode_brainix_as_jpeg
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
58
diff
changeset
|
2774 j = GetImage(_REMOTE, '/instances/%s/preview' % i, headers = { 'Accept' : 'image/png' }) |
|
84378ada15ab
test_decode_brainix_as_jpeg
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
58
diff
changeset
|
2775 self.assertEqual('PNG', j.format) |
|
84378ada15ab
test_decode_brainix_as_jpeg
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
58
diff
changeset
|
2776 |
|
84378ada15ab
test_decode_brainix_as_jpeg
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
58
diff
changeset
|
2777 j = GetImage(_REMOTE, '/instances/%s/preview' % i, headers = { 'Accept' : 'image/jpeg' }) |
|
84378ada15ab
test_decode_brainix_as_jpeg
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
58
diff
changeset
|
2778 self.assertEqual('JPEG', j.format) |
|
84378ada15ab
test_decode_brainix_as_jpeg
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
58
diff
changeset
|
2779 self.assertEqual(j.size[0], 256) |
|
84378ada15ab
test_decode_brainix_as_jpeg
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
58
diff
changeset
|
2780 self.assertEqual(j.size[1], 256) |
|
84378ada15ab
test_decode_brainix_as_jpeg
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
58
diff
changeset
|
2781 |
|
84378ada15ab
test_decode_brainix_as_jpeg
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
58
diff
changeset
|
2782 a = len(DoGet(_REMOTE, '/instances/%s/preview?quality=50' % i, headers = { 'Accept' : 'image/jpeg' })) |
|
84378ada15ab
test_decode_brainix_as_jpeg
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
58
diff
changeset
|
2783 b = len(DoGet(_REMOTE, '/instances/%s/preview' % i, headers = { 'Accept' : 'image/jpeg' })) |
|
84378ada15ab
test_decode_brainix_as_jpeg
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
58
diff
changeset
|
2784 self.assertLess(a, b) |
|
84378ada15ab
test_decode_brainix_as_jpeg
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
58
diff
changeset
|
2785 |
|
84378ada15ab
test_decode_brainix_as_jpeg
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
58
diff
changeset
|
2786 j = GetImage(_REMOTE, '/instances/%s/image-uint8' % i, headers = { 'Accept' : 'image/jpeg' }) |
|
84378ada15ab
test_decode_brainix_as_jpeg
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
58
diff
changeset
|
2787 self.assertEqual('JPEG', j.format) |
|
84378ada15ab
test_decode_brainix_as_jpeg
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
58
diff
changeset
|
2788 |
|
84378ada15ab
test_decode_brainix_as_jpeg
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
58
diff
changeset
|
2789 # 16bit encoding is not supported with JPEG |
|
84378ada15ab
test_decode_brainix_as_jpeg
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
58
diff
changeset
|
2790 self.assertRaises(Exception, lambda: GetImage(_REMOTE, '/instances/%s/image-uint16' % i, headers = { 'Accept' : 'image/jpeg' })) |
|
84378ada15ab
test_decode_brainix_as_jpeg
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
58
diff
changeset
|
2791 self.assertRaises(Exception, lambda: GetImage(_REMOTE, '/instances/%s/image-int16' % i, headers = { 'Accept' : 'image/jpeg' })) |
|
84378ada15ab
test_decode_brainix_as_jpeg
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
58
diff
changeset
|
2792 |
|
84378ada15ab
test_decode_brainix_as_jpeg
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
58
diff
changeset
|
2793 # No matching content type |
|
84378ada15ab
test_decode_brainix_as_jpeg
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
58
diff
changeset
|
2794 self.assertRaises(Exception, lambda: GetImage(_REMOTE, '/instances/%s/preview' % i, headers = { 'Accept' : 'application/pdf' })) |
|
69
83fd88230097
test_media_encodings
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
68
diff
changeset
|
2795 |
|
83fd88230097
test_media_encodings
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
68
diff
changeset
|
2796 |
|
83fd88230097
test_media_encodings
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
68
diff
changeset
|
2797 |
|
83fd88230097
test_media_encodings
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
68
diff
changeset
|
2798 def test_media_encodings(self): |
|
83fd88230097
test_media_encodings
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
68
diff
changeset
|
2799 ascii = UploadInstance(_REMOTE, 'Knee/T1/IM-0001-0001.dcm')['ID'] |
|
83fd88230097
test_media_encodings
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
68
diff
changeset
|
2800 latin1 = UploadInstance(_REMOTE, 'Brainix/Epi/IM-0001-0001.dcm')['ID'] |
|
83fd88230097
test_media_encodings
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
68
diff
changeset
|
2801 latin2 = UploadInstance(_REMOTE, 'MarekLatin2.dcm')['ID'] |
|
83fd88230097
test_media_encodings
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
68
diff
changeset
|
2802 |
|
83fd88230097
test_media_encodings
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
68
diff
changeset
|
2803 tmp = DoPost(_REMOTE, '/tools/create-media', [ascii,latin1,latin2]) |
|
83fd88230097
test_media_encodings
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
68
diff
changeset
|
2804 z = zipfile.ZipFile(StringIO(tmp), "r") |
|
83fd88230097
test_media_encodings
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
68
diff
changeset
|
2805 |
|
83fd88230097
test_media_encodings
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
68
diff
changeset
|
2806 self.assertEqual(4, len(z.namelist())) |
|
83fd88230097
test_media_encodings
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
68
diff
changeset
|
2807 self.assertTrue('IMAGES/IM0' in z.namelist()) |
|
83fd88230097
test_media_encodings
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
68
diff
changeset
|
2808 self.assertTrue('IMAGES/IM1' in z.namelist()) |
|
83fd88230097
test_media_encodings
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
68
diff
changeset
|
2809 self.assertTrue('IMAGES/IM2' in z.namelist()) |
|
83fd88230097
test_media_encodings
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
68
diff
changeset
|
2810 self.assertTrue('DICOMDIR' in z.namelist()) |
|
83fd88230097
test_media_encodings
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
68
diff
changeset
|
2811 |
|
83fd88230097
test_media_encodings
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
68
diff
changeset
|
2812 try: |
|
83fd88230097
test_media_encodings
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
68
diff
changeset
|
2813 os.remove('/tmp/DICOMDIR') |
|
83fd88230097
test_media_encodings
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
68
diff
changeset
|
2814 except: |
|
83fd88230097
test_media_encodings
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
68
diff
changeset
|
2815 # The file does not exist |
|
83fd88230097
test_media_encodings
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
68
diff
changeset
|
2816 pass |
|
83fd88230097
test_media_encodings
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
68
diff
changeset
|
2817 |
|
83fd88230097
test_media_encodings
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
68
diff
changeset
|
2818 z.extract('DICOMDIR', '/tmp') |
|
83fd88230097
test_media_encodings
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
68
diff
changeset
|
2819 a = subprocess.check_output([ FindExecutable('dciodvfy'), '/tmp/DICOMDIR' ], |
|
83fd88230097
test_media_encodings
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
68
diff
changeset
|
2820 stderr = subprocess.STDOUT).split('\n') |
|
83fd88230097
test_media_encodings
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
68
diff
changeset
|
2821 |
|
83fd88230097
test_media_encodings
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
68
diff
changeset
|
2822 a = subprocess.check_output([ FindExecutable('dcentvfy'), '/tmp/DICOMDIR' ], |
|
83fd88230097
test_media_encodings
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
68
diff
changeset
|
2823 stderr = subprocess.STDOUT).split('\n') |
|
83fd88230097
test_media_encodings
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
68
diff
changeset
|
2824 self.assertEqual(1, len(a)) |
|
83fd88230097
test_media_encodings
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
68
diff
changeset
|
2825 self.assertEqual('', a[0]) |
|
83fd88230097
test_media_encodings
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
68
diff
changeset
|
2826 |
|
83fd88230097
test_media_encodings
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
68
diff
changeset
|
2827 a = subprocess.check_output([ FindExecutable('dcm2xml'), '/tmp/DICOMDIR' ]) |
|
83fd88230097
test_media_encodings
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
68
diff
changeset
|
2828 self.assertTrue(re.search('1.3.46.670589.11.17521.5.0.3124.2008081908590448738', a) != None) |
|
83fd88230097
test_media_encodings
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
68
diff
changeset
|
2829 self.assertTrue(re.search('1.3.46.670589.11.0.0.11.4.2.0.8743.5.5396.2006120114333648576', a) != None) |
|
83fd88230097
test_media_encodings
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
68
diff
changeset
|
2830 self.assertTrue(re.search('1.2.826.0.1.3680043.2.1569.1.4.323026757.1700.1399452091.57', a) != None) |
|
83fd88230097
test_media_encodings
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
68
diff
changeset
|
2831 |
|
83fd88230097
test_media_encodings
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
68
diff
changeset
|
2832 os.remove('/tmp/DICOMDIR') |
|
71
48740070cbf1
TDD: tests for ongoing development of counter tags in C-Find
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
70
diff
changeset
|
2833 |
|
48740070cbf1
TDD: tests for ongoing development of counter tags in C-Find
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
70
diff
changeset
|
2834 |
|
48740070cbf1
TDD: tests for ongoing development of counter tags in C-Find
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
70
diff
changeset
|
2835 def test_findscu_counters(self): |
|
48740070cbf1
TDD: tests for ongoing development of counter tags in C-Find
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
70
diff
changeset
|
2836 UploadInstance(_REMOTE, 'Comunix/Ct/IM-0001-0001.dcm') |
|
48740070cbf1
TDD: tests for ongoing development of counter tags in C-Find
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
70
diff
changeset
|
2837 UploadInstance(_REMOTE, 'Comunix/Pet/IM-0001-0001.dcm') |
|
48740070cbf1
TDD: tests for ongoing development of counter tags in C-Find
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
70
diff
changeset
|
2838 UploadInstance(_REMOTE, 'Comunix/Pet/IM-0001-0002.dcm') |
|
48740070cbf1
TDD: tests for ongoing development of counter tags in C-Find
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
70
diff
changeset
|
2839 |
|
48740070cbf1
TDD: tests for ongoing development of counter tags in C-Find
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
70
diff
changeset
|
2840 i = CallFindScu([ '-k', '0008,0052=PATIENT', '-k', 'NumberOfPatientRelatedStudies' ]) |
|
48740070cbf1
TDD: tests for ongoing development of counter tags in C-Find
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
70
diff
changeset
|
2841 s = re.findall('\(0020,1200\).*?\[(.*?)\]', i) |
|
48740070cbf1
TDD: tests for ongoing development of counter tags in C-Find
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
70
diff
changeset
|
2842 self.assertEqual(1, len(s)) |
|
48740070cbf1
TDD: tests for ongoing development of counter tags in C-Find
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
70
diff
changeset
|
2843 self.assertTrue('1 ' in s) |
|
48740070cbf1
TDD: tests for ongoing development of counter tags in C-Find
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
70
diff
changeset
|
2844 |
|
48740070cbf1
TDD: tests for ongoing development of counter tags in C-Find
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
70
diff
changeset
|
2845 i = CallFindScu([ '-k', '0008,0052=PATIENT', '-k', 'NumberOfPatientRelatedSeries' ]) |
|
48740070cbf1
TDD: tests for ongoing development of counter tags in C-Find
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
70
diff
changeset
|
2846 s = re.findall('\(0020,1202\).*?\[(.*?)\]', i) |
|
48740070cbf1
TDD: tests for ongoing development of counter tags in C-Find
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
70
diff
changeset
|
2847 self.assertEqual(1, len(s)) |
|
48740070cbf1
TDD: tests for ongoing development of counter tags in C-Find
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
70
diff
changeset
|
2848 self.assertTrue('2 ' in s) |
|
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70
diff
changeset
|
2849 |
|
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diff
changeset
|
2850 i = CallFindScu([ '-k', '0008,0052=PATIENT', '-k', 'NumberOfPatientRelatedInstances' ]) |
|
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diff
changeset
|
2851 s = re.findall('\(0020,1204\).*?\[(.*?)\]', i) |
|
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70
diff
changeset
|
2852 self.assertEqual(1, len(s)) |
|
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parents:
70
diff
changeset
|
2853 self.assertTrue('3 ' in s) |
|
48740070cbf1
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parents:
70
diff
changeset
|
2854 |
|
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parents:
70
diff
changeset
|
2855 i = CallFindScu([ '-k', '0008,0052=STUDY', '-k', 'NumberOfStudyRelatedSeries' ]) |
|
48740070cbf1
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parents:
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diff
changeset
|
2856 s = re.findall('\(0020,1206\).*?\[(.*?)\]', i) |
|
48740070cbf1
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Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
changeset
|
2857 self.assertEqual(1, len(s)) |
|
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parents:
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diff
changeset
|
2858 self.assertTrue('2 ' in s) |
|
48740070cbf1
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diff
changeset
|
2859 |
|
48740070cbf1
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parents:
70
diff
changeset
|
2860 i = CallFindScu([ '-k', '0008,0052=STUDY', '-k', 'NumberOfStudyRelatedInstances' ]) |
|
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parents:
70
diff
changeset
|
2861 s = re.findall('\(0020,1208\).*?\[(.*?)\]', i) |
|
48740070cbf1
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Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
changeset
|
2862 self.assertEqual(1, len(s)) |
|
48740070cbf1
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parents:
70
diff
changeset
|
2863 self.assertTrue('3 ' in s) |
|
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parents:
70
diff
changeset
|
2864 |
|
48740070cbf1
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Sebastien Jodogne <s.jodogne@gmail.com>
parents:
70
diff
changeset
|
2865 i = CallFindScu([ '-k', '0008,0052=SERIES', '-k', 'NumberOfSeriesRelatedInstances' ]) |
|
48740070cbf1
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parents:
70
diff
changeset
|
2866 s = re.findall('\(0020,1209\).*?\[(.*?)\]', i) |
|
48740070cbf1
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Sebastien Jodogne <s.jodogne@gmail.com>
parents:
70
diff
changeset
|
2867 self.assertEqual(2, len(s)) |
|
48740070cbf1
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Sebastien Jodogne <s.jodogne@gmail.com>
parents:
70
diff
changeset
|
2868 self.assertTrue('1 ' in s) |
|
48740070cbf1
TDD: tests for ongoing development of counter tags in C-Find
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
70
diff
changeset
|
2869 self.assertTrue('2 ' in s) |
|
48740070cbf1
TDD: tests for ongoing development of counter tags in C-Find
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
70
diff
changeset
|
2870 |
|
48740070cbf1
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Sebastien Jodogne <s.jodogne@gmail.com>
parents:
70
diff
changeset
|
2871 i = CallFindScu([ '-k', '0008,0052=STUDY', '-k', 'ModalitiesInStudy' ]) |
|
48740070cbf1
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Sebastien Jodogne <s.jodogne@gmail.com>
parents:
70
diff
changeset
|
2872 s = re.findall('\(0008,0061\).*?\[(.*?)\]', i) |
|
48740070cbf1
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Sebastien Jodogne <s.jodogne@gmail.com>
parents:
70
diff
changeset
|
2873 self.assertEqual(1, len(s)) |
|
48740070cbf1
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Sebastien Jodogne <s.jodogne@gmail.com>
parents:
70
diff
changeset
|
2874 t = map(lambda x: x.strip(), s[0].split('\\')) |
|
48740070cbf1
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Sebastien Jodogne <s.jodogne@gmail.com>
parents:
70
diff
changeset
|
2875 self.assertTrue('PT' in t) |
|
48740070cbf1
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Sebastien Jodogne <s.jodogne@gmail.com>
parents:
70
diff
changeset
|
2876 self.assertTrue('CT' in t) |
|
48740070cbf1
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Sebastien Jodogne <s.jodogne@gmail.com>
parents:
70
diff
changeset
|
2877 |
|
48740070cbf1
TDD: tests for ongoing development of counter tags in C-Find
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
70
diff
changeset
|
2878 i = CallFindScu([ '-k', '0008,0052=STUDY', '-k', 'SOPClassesInStudy' ]) |
|
48740070cbf1
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Sebastien Jodogne <s.jodogne@gmail.com>
parents:
70
diff
changeset
|
2879 s = re.findall('\(0008,0062\).*?\[(.*?)\]', i) |
|
48740070cbf1
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Sebastien Jodogne <s.jodogne@gmail.com>
parents:
70
diff
changeset
|
2880 self.assertEqual(1, len(s)) |
|
176
48cc188ffb09
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am@osimis.io
parents:
175
diff
changeset
|
2881 t = map(lambda x: x.strip('\x00'), s[0].split('\\')) |
|
71
48740070cbf1
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parents:
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diff
changeset
|
2882 self.assertTrue('1.2.840.10008.5.1.4.1.1.2' in t) |
|
48740070cbf1
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Sebastien Jodogne <s.jodogne@gmail.com>
parents:
70
diff
changeset
|
2883 self.assertTrue('1.2.840.10008.5.1.4.1.1.128' in t) |
|
48740070cbf1
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parents:
70
diff
changeset
|
2884 |
|
48740070cbf1
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parents:
70
diff
changeset
|
2885 |
|
78
b89af51797ff
test_decode_transfer_syntax
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
74
diff
changeset
|
2886 def test_decode_transfer_syntax(self): |
|
b89af51797ff
test_decode_transfer_syntax
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
74
diff
changeset
|
2887 def Check(t, md5): |
|
b89af51797ff
test_decode_transfer_syntax
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parents:
74
diff
changeset
|
2888 i = UploadInstance(_REMOTE, 'TransferSyntaxes/%s.dcm' % t)['ID'] |
|
b89af51797ff
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parents:
74
diff
changeset
|
2889 |
|
89
74b7b9aed5f8
test TransferSyntax metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
87
diff
changeset
|
2890 if t != '1.2.840.10008.1.2': # This file has no meta header |
|
74b7b9aed5f8
test TransferSyntax metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
87
diff
changeset
|
2891 transferSyntax = DoGet(_REMOTE, '/instances/%s/metadata/TransferSyntax' % i) |
|
74b7b9aed5f8
test TransferSyntax metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
87
diff
changeset
|
2892 self.assertEqual(t, transferSyntax) |
|
74b7b9aed5f8
test TransferSyntax metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
87
diff
changeset
|
2893 |
|
78
b89af51797ff
test_decode_transfer_syntax
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parents:
74
diff
changeset
|
2894 if md5 == None: |
|
b89af51797ff
test_decode_transfer_syntax
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parents:
74
diff
changeset
|
2895 self.assertRaises(Exception, lambda: DoGet(_REMOTE, '/instances/%s/preview' % i)) |
|
b89af51797ff
test_decode_transfer_syntax
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parents:
74
diff
changeset
|
2896 else: |
|
b89af51797ff
test_decode_transfer_syntax
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
74
diff
changeset
|
2897 m = ComputeMD5(DoGet(_REMOTE, '/instances/%s/preview' % i)) |
|
b89af51797ff
test_decode_transfer_syntax
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
74
diff
changeset
|
2898 self.assertEqual(m, md5) |
|
b89af51797ff
test_decode_transfer_syntax
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
74
diff
changeset
|
2899 |
|
b89af51797ff
test_decode_transfer_syntax
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
74
diff
changeset
|
2900 Check('1.2.840.10008.1.2.1', 'fae08d5415c4c0cd2cdbae4522408631') |
|
b89af51797ff
test_decode_transfer_syntax
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parents:
74
diff
changeset
|
2901 Check('1.2.840.10008.1.2.2', 'f3d9784768b8feb54d6a50b6d5c37682') |
|
b89af51797ff
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parents:
74
diff
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|
2902 Check('1.2.840.10008.1.2.4.50', '496326046974eea718dbc16b997c646b') |
|
b89af51797ff
test_decode_transfer_syntax
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
74
diff
changeset
|
2903 Check('1.2.840.10008.1.2.4.51', 'ccbe75909fe5c9f7361b48416a53fc41') |
|
b89af51797ff
test_decode_transfer_syntax
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
74
diff
changeset
|
2904 Check('1.2.840.10008.1.2.4.57', '7bbefe11d976b1be4e568915c6a82fc3') |
|
b89af51797ff
test_decode_transfer_syntax
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
74
diff
changeset
|
2905 Check('1.2.840.10008.1.2.4.70', '7132cfbc457305b04b59787030c785d2') |
|
b89af51797ff
test_decode_transfer_syntax
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
74
diff
changeset
|
2906 Check('1.2.840.10008.1.2.4.80', '6ff51ae525d362e0d04f550a64075a0e') |
|
b89af51797ff
test_decode_transfer_syntax
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
74
diff
changeset
|
2907 Check('1.2.840.10008.1.2.4.81', '801579ae7cbf28e604ea74f2c99fa2ca') |
|
b89af51797ff
test_decode_transfer_syntax
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parents:
74
diff
changeset
|
2908 Check('1.2.840.10008.1.2.5', '6ff51ae525d362e0d04f550a64075a0e') # RLE, supported since Orthanc 1.0.1 |
|
b89af51797ff
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parents:
74
diff
changeset
|
2909 Check('1.2.840.10008.1.2', 'd54aed9f67a100984b42942cc2e9939b') |
|
b89af51797ff
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parents:
74
diff
changeset
|
2910 Check('1.2.840.10008.1.2.4.90', None) # JPEG-2000 image, not supported |
|
b89af51797ff
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diff
changeset
|
2911 Check('1.2.840.10008.1.2.4.91', None) # JPEG-2000 image, not supported |
| 79 | 2912 |
| 2913 | |
| 2914 def test_raw_frame(self): | |
| 2915 s = UploadInstance(_REMOTE, 'Issue22.dcm')['ID'] | |
| 2916 self.assertEqual(24, len(DoGet(_REMOTE, '/instances/%s/frames' % s))) | |
| 2917 a = DoGet(_REMOTE, '/instances/%s/frames/0/raw' % s) | |
| 2918 self.assertEqual(512 * 512 * 2, len(a)) | |
| 2919 self.assertEqual(512 * 512 * 2, len(DoGet(_REMOTE, '/instances/%s/frames/23/raw' % s))) | |
| 2920 self.assertRaises(Exception, lambda: DoGet(_REMOTE, '/instances/%s/frames/24/raw' % s)) | |
| 2921 self.assertEqual('1914287dc4d958eca21fdaacfb3482fa', ComputeMD5(a)) | |
| 2922 | |
| 2923 s = UploadInstance(_REMOTE, 'Multiframe.dcm')['ID'] | |
| 2924 self.assertEqual(76, len(DoGet(_REMOTE, '/instances/%s/frames' % s))) | |
| 2925 self.assertEqual(186274, len(DoGet(_REMOTE, '/instances/%s/frames/0/raw' % s))) | |
| 2926 self.assertEqual(189424, len(DoGet(_REMOTE, '/instances/%s/frames/75/raw' % s))) | |
| 2927 self.assertRaises(Exception, lambda: DoGet(_REMOTE, '/instances/%s/frames/76/raw' % s)) | |
| 2928 im = GetImage(_REMOTE, '/instances/%s/frames/0/raw' % s) | |
| 2929 self.assertEqual("L", im.mode) | |
| 2930 self.assertEqual(512, im.size[0]) | |
| 2931 self.assertEqual(512, im.size[1]) | |
| 2932 | |
| 2933 # Test an image with 2 JPEG frames spread over multiple fragments | |
| 2934 s = UploadInstance(_REMOTE, 'LenaTwiceWithFragments.dcm')['ID'] | |
| 2935 self.assertEqual(2, len(DoGet(_REMOTE, '/instances/%s/frames' % s))) | |
| 2936 a = DoGet(_REMOTE, '/instances/%s/frames/0/raw' % s) | |
| 2937 b = DoGet(_REMOTE, '/instances/%s/frames/1/raw' % s) | |
| 2938 self.assertEqual(69214, len(a)) | |
| 2939 self.assertEqual(ComputeMD5(a), ComputeMD5(b)) | |
| 2940 self.assertRaises(Exception, lambda: DoGet(_REMOTE, '/instances/%s/frames/2/raw' % s)) | |
| 2941 im = GetImage(_REMOTE, '/instances/%s/frames/0/raw' % s) | |
| 2942 self.assertEqual("RGB", im.mode) | |
| 2943 self.assertEqual(512, im.size[0]) | |
| 2944 self.assertEqual(512, im.size[1]) | |
| 2945 im = GetImage(_REMOTE, '/instances/%s/frames/0/preview' % s) | |
| 2946 self.assertEqual("RGB", im.mode) | |
| 2947 self.assertEqual(512, im.size[0]) | |
| 2948 self.assertEqual(512, im.size[1]) | |
| 81 | 2949 |
| 2950 | |
| 2951 | |
| 2952 def test_rest_movescu(self): | |
| 2953 self.assertEqual(0, len(DoGet(_REMOTE, '/patients'))) | |
| 2954 | |
| 2955 # Upload 4 instances | |
| 2956 UploadInstance(_REMOTE, 'Brainix/Flair/IM-0001-0001.dcm') | |
| 2957 UploadInstance(_REMOTE, 'Brainix/Flair/IM-0001-0002.dcm') | |
| 2958 UploadInstance(_REMOTE, 'Brainix/Epi/IM-0001-0001.dcm') | |
| 2959 UploadInstance(_REMOTE, 'Knee/T2/IM-0001-0001.dcm') | |
| 2960 | |
| 2961 self.assertEqual(2, len(DoGet(_REMOTE, '/patients'))) | |
| 2962 for p in DoGet(_REMOTE, '/patients'): | |
| 2963 DoPost(_REMOTE, '/modalities/orthanctest/store', p) | |
| 2964 DoDelete(_REMOTE, '/patients/%s' % p) | |
| 2965 | |
| 2966 self.assertEqual(0, len(DoGet(_REMOTE, '/patients'))) | |
| 2967 | |
| 2968 # Upload instance Brainix/Flair/IM-0001-0001.dcm | |
| 2969 DoPost(_REMOTE, '/modalities/orthanctest/move', { 'Level' : 'Instance', | |
| 2970 'Resources' : [ | |
| 2971 { | |
| 2972 'StudyInstanceUID' : '2.16.840.1.113669.632.20.1211.10000357775', | |
| 2973 'SeriesInstanceUID' : '1.3.46.670589.11.0.0.11.4.2.0.8743.5.5396.2006120114285654497', | |
| 2974 'SOPInstanceUID' : '1.3.46.670589.11.0.0.11.4.2.0.8743.5.5396.2006120114314079549', | |
| 2975 } | |
| 2976 ]}) | |
| 2977 | |
| 2978 # Upload series Brainix/Flair/* | |
| 2979 self.assertEqual(1, len(DoGet(_REMOTE, '/patients'))) | |
| 2980 self.assertEqual(1, len(DoGet(_REMOTE, '/studies'))) | |
| 2981 self.assertEqual(1, len(DoGet(_REMOTE, '/series'))) | |
| 2982 self.assertEqual(1, len(DoGet(_REMOTE, '/instances'))) | |
| 2983 | |
| 2984 DoPost(_REMOTE, '/modalities/orthanctest/move', { 'Level' : 'Series', | |
| 2985 'Resources' : [ | |
| 2986 { | |
| 2987 'StudyInstanceUID' : '2.16.840.1.113669.632.20.1211.10000357775', | |
| 2988 'SeriesInstanceUID' : '1.3.46.670589.11.0.0.11.4.2.0.8743.5.5396.2006120114285654497', | |
| 2989 } | |
| 2990 ]}) | |
| 2991 self.assertEqual(1, len(DoGet(_REMOTE, '/patients'))) | |
| 2992 self.assertEqual(1, len(DoGet(_REMOTE, '/studies'))) | |
| 2993 self.assertEqual(1, len(DoGet(_REMOTE, '/series'))) | |
| 2994 self.assertEqual(2, len(DoGet(_REMOTE, '/instances'))) | |
| 2995 | |
| 2996 # Upload series Brainix/Epi/* | |
| 2997 DoPost(_REMOTE, '/modalities/orthanctest/move', { 'Level' : 'Series', | |
| 2998 'Resources' : [ | |
| 2999 { | |
| 3000 'StudyInstanceUID' : '2.16.840.1.113669.632.20.1211.10000357775', | |
| 3001 'SeriesInstanceUID' : '1.3.46.670589.11.0.0.11.4.2.0.8743.5.5396.2006120114314125550', | |
| 3002 } | |
| 3003 ]}) | |
| 3004 self.assertEqual(1, len(DoGet(_REMOTE, '/patients'))) | |
| 3005 self.assertEqual(1, len(DoGet(_REMOTE, '/studies'))) | |
| 3006 self.assertEqual(2, len(DoGet(_REMOTE, '/series'))) | |
| 3007 self.assertEqual(3, len(DoGet(_REMOTE, '/instances'))) | |
| 3008 | |
| 3009 # Upload study Knee/* | |
| 3010 DoPost(_REMOTE, '/modalities/orthanctest/move', { 'Level' : 'Study', | |
| 3011 'Resources' : [ | |
| 3012 { | |
| 3013 'StudyInstanceUID' : '2.16.840.1.113669.632.20.121711.10000160881', | |
| 3014 } | |
| 3015 ]}) | |
| 3016 self.assertEqual(2, len(DoGet(_REMOTE, '/patients'))) | |
| 3017 self.assertEqual(2, len(DoGet(_REMOTE, '/studies'))) | |
| 3018 self.assertEqual(3, len(DoGet(_REMOTE, '/series'))) | |
| 3019 self.assertEqual(4, len(DoGet(_REMOTE, '/instances'))) | |
| 3020 | |
| 3021 # Reset | |
| 3022 for p in DoGet(_REMOTE, '/patients'): | |
| 3023 DoDelete(_REMOTE, '/patients/%s' % p) | |
| 3024 | |
| 3025 self.assertEqual(0, len(DoGet(_REMOTE, '/patients'))) | |
| 3026 | |
| 3027 | |
| 3028 # Upload all at once | |
| 3029 DoPost(_REMOTE, '/modalities/orthanctest/move', { 'Level' : 'Study', | |
| 3030 'Resources' : [ | |
| 3031 { | |
| 3032 'StudyInstanceUID' : '2.16.840.1.113669.632.20.121711.10000160881', | |
| 3033 }, | |
| 3034 { | |
| 3035 'StudyInstanceUID' : '2.16.840.1.113669.632.20.1211.10000357775', | |
| 3036 } | |
| 3037 ]}) | |
| 3038 self.assertEqual(2, len(DoGet(_REMOTE, '/patients'))) | |
| 3039 self.assertEqual(2, len(DoGet(_REMOTE, '/studies'))) | |
| 3040 self.assertEqual(3, len(DoGet(_REMOTE, '/series'))) | |
| 3041 self.assertEqual(4, len(DoGet(_REMOTE, '/instances'))) | |
| 3042 | |
|
86
0401ef51f5c1
test_reconstruct_json
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
83
diff
changeset
|
3043 |
|
0401ef51f5c1
test_reconstruct_json
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
83
diff
changeset
|
3044 |
|
0401ef51f5c1
test_reconstruct_json
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
83
diff
changeset
|
3045 def test_reconstruct_json(self): |
|
0401ef51f5c1
test_reconstruct_json
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
83
diff
changeset
|
3046 self.assertEqual(0, len(DoGet(_REMOTE, '/patients'))) |
|
0401ef51f5c1
test_reconstruct_json
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
83
diff
changeset
|
3047 |
|
0401ef51f5c1
test_reconstruct_json
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
83
diff
changeset
|
3048 instance = UploadInstance(_REMOTE, 'DummyCT.dcm')['ID'] |
|
0401ef51f5c1
test_reconstruct_json
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
83
diff
changeset
|
3049 first = DoGet(_REMOTE, '/instances/%s/tags' % instance) |
|
0401ef51f5c1
test_reconstruct_json
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
83
diff
changeset
|
3050 |
|
0401ef51f5c1
test_reconstruct_json
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
83
diff
changeset
|
3051 self.assertEqual('TWINOW', first['0008,1010']['Value']) |
|
0401ef51f5c1
test_reconstruct_json
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
83
diff
changeset
|
3052 self.assertEqual(2, len(DoGet(_REMOTE, '/instances/%s/attachments' % instance))) |
|
0401ef51f5c1
test_reconstruct_json
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
83
diff
changeset
|
3053 |
|
0401ef51f5c1
test_reconstruct_json
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
83
diff
changeset
|
3054 # Cannot delete the "DICOM" attachment |
|
0401ef51f5c1
test_reconstruct_json
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
83
diff
changeset
|
3055 self.assertRaises(Exception, lambda: DoDelete(_REMOTE, '/instances/%s/attachments/dicom' % instance)) |
|
0401ef51f5c1
test_reconstruct_json
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
83
diff
changeset
|
3056 |
|
0401ef51f5c1
test_reconstruct_json
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
83
diff
changeset
|
3057 # Can delete the "DICOM as JSON" attachment |
|
0401ef51f5c1
test_reconstruct_json
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
83
diff
changeset
|
3058 r = DoDelete(_REMOTE, '/instances/%s/attachments/dicom-as-json' % instance) |
|
0401ef51f5c1
test_reconstruct_json
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
83
diff
changeset
|
3059 self.assertTrue(type(r) is dict and len(r) == 0) |
|
0401ef51f5c1
test_reconstruct_json
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
83
diff
changeset
|
3060 |
|
0401ef51f5c1
test_reconstruct_json
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
83
diff
changeset
|
3061 # Only the "DICOM" attachment subsists |
|
0401ef51f5c1
test_reconstruct_json
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
83
diff
changeset
|
3062 self.assertEqual(1, len(DoGet(_REMOTE, '/instances/%s/attachments' % instance))) |
|
0401ef51f5c1
test_reconstruct_json
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
83
diff
changeset
|
3063 |
|
0401ef51f5c1
test_reconstruct_json
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
83
diff
changeset
|
3064 # Cannot manually reconstruct the "DICOM as JSON" attachment |
|
0401ef51f5c1
test_reconstruct_json
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
83
diff
changeset
|
3065 self.assertRaises(Exception, lambda: DoPut(_REMOTE, '/patients/%s/attachments/dicom-as-json' % patient, 'hello')) |
|
0401ef51f5c1
test_reconstruct_json
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
83
diff
changeset
|
3066 |
|
0401ef51f5c1
test_reconstruct_json
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
83
diff
changeset
|
3067 # Transparently reconstruct the "DICOM as JSON" attachment |
|
0401ef51f5c1
test_reconstruct_json
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
83
diff
changeset
|
3068 self.assertRaises(Exception, lambda: DoGet(_REMOTE, '/instances/%s/attachments/dicom-as-json' % instance)) |
|
0401ef51f5c1
test_reconstruct_json
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
83
diff
changeset
|
3069 second = DoGet(_REMOTE, '/instances/%s/tags' % instance) |
|
0401ef51f5c1
test_reconstruct_json
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
83
diff
changeset
|
3070 self.assertEqual(2, len(DoGet(_REMOTE, '/instances/%s/attachments' % instance))) |
|
0401ef51f5c1
test_reconstruct_json
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
83
diff
changeset
|
3071 |
|
0401ef51f5c1
test_reconstruct_json
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
83
diff
changeset
|
3072 third = DoGet(_REMOTE, '/instances/%s/attachments/dicom-as-json/data' % instance) |
|
0401ef51f5c1
test_reconstruct_json
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
83
diff
changeset
|
3073 self.assertEqual(str(first), str(second)) |
|
0401ef51f5c1
test_reconstruct_json
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
83
diff
changeset
|
3074 self.assertEqual(str(first), str(third)) |
|
87
4b24faec842b
test_reconstruct_json2 + test_private_tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
86
diff
changeset
|
3075 |
|
4b24faec842b
test_reconstruct_json2 + test_private_tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
86
diff
changeset
|
3076 |
|
4b24faec842b
test_reconstruct_json2 + test_private_tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
86
diff
changeset
|
3077 def test_reconstruct_json2(self): |
|
4b24faec842b
test_reconstruct_json2 + test_private_tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
86
diff
changeset
|
3078 self.assertEqual(0, len(DoGet(_REMOTE, '/patients'))) |
|
4b24faec842b
test_reconstruct_json2 + test_private_tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
86
diff
changeset
|
3079 |
|
4b24faec842b
test_reconstruct_json2 + test_private_tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
86
diff
changeset
|
3080 a = UploadInstance(_REMOTE, 'Brainix/Flair/IM-0001-0001.dcm')['ID'] |
|
4b24faec842b
test_reconstruct_json2 + test_private_tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
86
diff
changeset
|
3081 b = UploadInstance(_REMOTE, 'Knee/T2/IM-0001-0001.dcm')['ID'] |
|
4b24faec842b
test_reconstruct_json2 + test_private_tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
86
diff
changeset
|
3082 |
|
4b24faec842b
test_reconstruct_json2 + test_private_tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
86
diff
changeset
|
3083 self.assertEqual('BRAINIX', DoGet(_REMOTE, '/instances/%s/tags?simplify' % a)['PatientName']) |
|
4b24faec842b
test_reconstruct_json2 + test_private_tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
86
diff
changeset
|
3084 self.assertEqual('KNEE', DoGet(_REMOTE, '/instances/%s/tags?simplify' % b)['PatientName']) |
|
4b24faec842b
test_reconstruct_json2 + test_private_tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
86
diff
changeset
|
3085 |
|
4b24faec842b
test_reconstruct_json2 + test_private_tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
86
diff
changeset
|
3086 self.assertEqual(2, len(DoGet(_REMOTE, '/instances/%s/attachments' % a))) |
|
4b24faec842b
test_reconstruct_json2 + test_private_tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
86
diff
changeset
|
3087 self.assertEqual(2, len(DoGet(_REMOTE, '/instances/%s/attachments' % b))) |
|
4b24faec842b
test_reconstruct_json2 + test_private_tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
86
diff
changeset
|
3088 |
|
4b24faec842b
test_reconstruct_json2 + test_private_tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
86
diff
changeset
|
3089 DoPost(_REMOTE, '/tools/invalidate-tags', '', 'text/plain') |
|
4b24faec842b
test_reconstruct_json2 + test_private_tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
86
diff
changeset
|
3090 |
|
4b24faec842b
test_reconstruct_json2 + test_private_tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
86
diff
changeset
|
3091 self.assertEqual(1, len(DoGet(_REMOTE, '/instances/%s/attachments' % a))) |
|
4b24faec842b
test_reconstruct_json2 + test_private_tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
86
diff
changeset
|
3092 self.assertEqual(1, len(DoGet(_REMOTE, '/instances/%s/attachments' % b))) |
|
4b24faec842b
test_reconstruct_json2 + test_private_tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
86
diff
changeset
|
3093 |
|
4b24faec842b
test_reconstruct_json2 + test_private_tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
86
diff
changeset
|
3094 self.assertEqual('BRAINIX', DoGet(_REMOTE, '/instances/%s/tags?simplify' % a)['PatientName']) |
|
4b24faec842b
test_reconstruct_json2 + test_private_tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
86
diff
changeset
|
3095 self.assertEqual('KNEE', DoGet(_REMOTE, '/instances/%s/tags?simplify' % b)['PatientName']) |
|
4b24faec842b
test_reconstruct_json2 + test_private_tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
86
diff
changeset
|
3096 |
|
4b24faec842b
test_reconstruct_json2 + test_private_tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
86
diff
changeset
|
3097 self.assertEqual(2, len(DoGet(_REMOTE, '/instances/%s/attachments' % a))) |
|
4b24faec842b
test_reconstruct_json2 + test_private_tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
86
diff
changeset
|
3098 self.assertEqual(2, len(DoGet(_REMOTE, '/instances/%s/attachments' % b))) |
|
4b24faec842b
test_reconstruct_json2 + test_private_tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
86
diff
changeset
|
3099 |
|
4b24faec842b
test_reconstruct_json2 + test_private_tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
86
diff
changeset
|
3100 |
|
4b24faec842b
test_reconstruct_json2 + test_private_tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
86
diff
changeset
|
3101 def test_private_tags(self): |
|
4b24faec842b
test_reconstruct_json2 + test_private_tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
86
diff
changeset
|
3102 i = UploadInstance(_REMOTE, 'PrivateMDNTags.dcm')['ID'] |
|
4b24faec842b
test_reconstruct_json2 + test_private_tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
86
diff
changeset
|
3103 t = DoGet(_REMOTE, '/instances/%s/tags?simplify' % i) |
|
4b24faec842b
test_reconstruct_json2 + test_private_tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
86
diff
changeset
|
3104 self.assertEqual('1.2.840.113704.1.111.6320.1342451261.21', t['PET-CT Multi Modality Name']) |
|
4b24faec842b
test_reconstruct_json2 + test_private_tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
86
diff
changeset
|
3105 self.assertEqual('p37s0_na_ctac.img', t['Original Image Filename']) |
|
4b24faec842b
test_reconstruct_json2 + test_private_tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
86
diff
changeset
|
3106 |
|
92
dbcbffb889da
test_findscu_encoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
89
diff
changeset
|
3107 |
|
dbcbffb889da
test_findscu_encoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
89
diff
changeset
|
3108 def test_findscu_encoding(self): |
|
dbcbffb889da
test_findscu_encoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
89
diff
changeset
|
3109 # Check out ../Database/Encodings/Generate.sh |
|
dbcbffb889da
test_findscu_encoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
89
diff
changeset
|
3110 TEST = u'Test-éüäöòДΘĝדصķћ๛ﾈİ' |
|
dbcbffb889da
test_findscu_encoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
89
diff
changeset
|
3111 ENCODINGS = { |
|
dbcbffb889da
test_findscu_encoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
89
diff
changeset
|
3112 'Arabic' : [ 'ISO_IR 127' ], |
|
dbcbffb889da
test_findscu_encoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
89
diff
changeset
|
3113 'Ascii' : [ 'ISO_IR 6' ], # More accurately, ISO 646 |
|
dbcbffb889da
test_findscu_encoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
89
diff
changeset
|
3114 'Cyrillic' : [ 'ISO_IR 144' ], |
|
dbcbffb889da
test_findscu_encoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
89
diff
changeset
|
3115 'Greek' : [ 'ISO_IR 126' ], |
|
dbcbffb889da
test_findscu_encoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
89
diff
changeset
|
3116 'Hebrew' : [ 'ISO_IR 138' ], |
|
dbcbffb889da
test_findscu_encoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
89
diff
changeset
|
3117 'Japanese' : [ 'ISO_IR 13', 'shift-jis' ], |
|
dbcbffb889da
test_findscu_encoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
89
diff
changeset
|
3118 'Latin1' : [ 'ISO_IR 100' ], |
|
dbcbffb889da
test_findscu_encoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
89
diff
changeset
|
3119 'Latin2' : [ 'ISO_IR 101' ], |
|
dbcbffb889da
test_findscu_encoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
89
diff
changeset
|
3120 'Latin3' : [ 'ISO_IR 109' ], |
|
dbcbffb889da
test_findscu_encoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
89
diff
changeset
|
3121 'Latin4' : [ 'ISO_IR 110' ], |
|
dbcbffb889da
test_findscu_encoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
89
diff
changeset
|
3122 'Latin5' : [ 'ISO_IR 148' ], |
|
dbcbffb889da
test_findscu_encoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
89
diff
changeset
|
3123 'Thai' : [ 'ISO_IR 166', 'tis-620' ], |
|
dbcbffb889da
test_findscu_encoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
89
diff
changeset
|
3124 'Utf8' : [ 'ISO_IR 192' ], |
|
dbcbffb889da
test_findscu_encoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
89
diff
changeset
|
3125 } |
|
dbcbffb889da
test_findscu_encoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
89
diff
changeset
|
3126 |
|
dbcbffb889da
test_findscu_encoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
89
diff
changeset
|
3127 for name in ENCODINGS.iterkeys(): |
|
dbcbffb889da
test_findscu_encoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
89
diff
changeset
|
3128 if len(ENCODINGS[name]) == 1: |
|
dbcbffb889da
test_findscu_encoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
89
diff
changeset
|
3129 ENCODINGS[name].append(name.lower()) |
|
dbcbffb889da
test_findscu_encoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
89
diff
changeset
|
3130 |
|
dbcbffb889da
test_findscu_encoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
89
diff
changeset
|
3131 UploadInstance(_REMOTE, 'Encodings/Lena-utf8.dcm') |
|
dbcbffb889da
test_findscu_encoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
89
diff
changeset
|
3132 |
|
dbcbffb889da
test_findscu_encoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
89
diff
changeset
|
3133 for name in ENCODINGS.iterkeys(): |
|
dbcbffb889da
test_findscu_encoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
89
diff
changeset
|
3134 self.assertEqual(name, DoPut(_REMOTE, '/tools/default-encoding', name)) |
|
dbcbffb889da
test_findscu_encoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
89
diff
changeset
|
3135 self.assertEqual(name, DoGet(_REMOTE, '/tools/default-encoding')) |
|
dbcbffb889da
test_findscu_encoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
89
diff
changeset
|
3136 |
|
dbcbffb889da
test_findscu_encoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
89
diff
changeset
|
3137 i = CallFindScu([ '-k', '0008,0052=STUDY', |
|
dbcbffb889da
test_findscu_encoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
89
diff
changeset
|
3138 '-k', 'SpecificCharacterSet', |
|
dbcbffb889da
test_findscu_encoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
89
diff
changeset
|
3139 '-k', 'PatientName' ]) |
|
dbcbffb889da
test_findscu_encoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
89
diff
changeset
|
3140 |
|
dbcbffb889da
test_findscu_encoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
89
diff
changeset
|
3141 characterSet = re.findall('\(0008,0005\).*?\[(.*?)\]', i) |
|
dbcbffb889da
test_findscu_encoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
89
diff
changeset
|
3142 self.assertEqual(1, len(characterSet)) |
|
dbcbffb889da
test_findscu_encoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
89
diff
changeset
|
3143 self.assertEqual(ENCODINGS[name][0], characterSet[0].strip()) |
|
dbcbffb889da
test_findscu_encoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
89
diff
changeset
|
3144 |
|
dbcbffb889da
test_findscu_encoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
89
diff
changeset
|
3145 patientName = re.findall('\(0010,0010\).*?\[(.*?)\]', i) |
|
dbcbffb889da
test_findscu_encoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
89
diff
changeset
|
3146 self.assertEqual(1, len(patientName)) |
|
dbcbffb889da
test_findscu_encoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
89
diff
changeset
|
3147 |
|
dbcbffb889da
test_findscu_encoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
89
diff
changeset
|
3148 expected = TEST.encode(ENCODINGS[name][1], 'ignore') |
|
dbcbffb889da
test_findscu_encoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
89
diff
changeset
|
3149 self.assertEqual(expected, patientName[0].strip()) |
|
dbcbffb889da
test_findscu_encoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
89
diff
changeset
|
3150 |
|
dbcbffb889da
test_findscu_encoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
89
diff
changeset
|
3151 |
|
dbcbffb889da
test_findscu_encoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
89
diff
changeset
|
3152 #for master in ENCODINGS: |
|
dbcbffb889da
test_findscu_encoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
89
diff
changeset
|
3153 for master in [ 'Latin1', 'Utf8', 'Cyrillic' ]: # Shortcut to speedup tests |
|
dbcbffb889da
test_findscu_encoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
89
diff
changeset
|
3154 self.assertEqual(master, DoPut(_REMOTE, '/tools/default-encoding', master)) |
|
dbcbffb889da
test_findscu_encoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
89
diff
changeset
|
3155 self.assertEqual(master, DoGet(_REMOTE, '/tools/default-encoding')) |
|
dbcbffb889da
test_findscu_encoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
89
diff
changeset
|
3156 |
|
dbcbffb889da
test_findscu_encoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
89
diff
changeset
|
3157 for name in ENCODINGS: |
|
dbcbffb889da
test_findscu_encoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
89
diff
changeset
|
3158 DropOrthanc(_REMOTE) |
|
dbcbffb889da
test_findscu_encoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
89
diff
changeset
|
3159 UploadInstance(_REMOTE, 'Encodings/Lena-%s.dcm' % ENCODINGS[name][1]) |
|
dbcbffb889da
test_findscu_encoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
89
diff
changeset
|
3160 |
|
dbcbffb889da
test_findscu_encoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
89
diff
changeset
|
3161 i = CallFindScu([ '-k', '0008,0052=STUDY', |
|
dbcbffb889da
test_findscu_encoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
89
diff
changeset
|
3162 '-k', 'PatientID', |
|
dbcbffb889da
test_findscu_encoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
89
diff
changeset
|
3163 '-k', 'SpecificCharacterSet', |
|
dbcbffb889da
test_findscu_encoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
89
diff
changeset
|
3164 '-k', 'PatientName' ]) |
|
dbcbffb889da
test_findscu_encoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
89
diff
changeset
|
3165 i = i.decode(ENCODINGS[master][1]) |
|
dbcbffb889da
test_findscu_encoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
89
diff
changeset
|
3166 |
|
dbcbffb889da
test_findscu_encoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
89
diff
changeset
|
3167 characterSet = re.findall('\(0008,0005\).*?\[(.*?)\]', i) |
|
dbcbffb889da
test_findscu_encoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
89
diff
changeset
|
3168 self.assertEqual(1, len(characterSet)) |
|
dbcbffb889da
test_findscu_encoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
89
diff
changeset
|
3169 self.assertEqual(ENCODINGS[master][0], characterSet[0].strip()) |
|
dbcbffb889da
test_findscu_encoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
89
diff
changeset
|
3170 |
|
dbcbffb889da
test_findscu_encoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
89
diff
changeset
|
3171 patientId = re.findall('\(0010,0020\).*?\[(.*?)\]', i) |
|
dbcbffb889da
test_findscu_encoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
89
diff
changeset
|
3172 self.assertEqual(1, len(patientId)) |
|
dbcbffb889da
test_findscu_encoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
89
diff
changeset
|
3173 self.assertEqual(ENCODINGS[name][1], patientId[0].strip()) |
|
dbcbffb889da
test_findscu_encoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
89
diff
changeset
|
3174 |
|
dbcbffb889da
test_findscu_encoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
89
diff
changeset
|
3175 patientName = re.findall('\(0010,0010\).*?\[(.*?)\]', i) |
|
dbcbffb889da
test_findscu_encoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
89
diff
changeset
|
3176 self.assertEqual(1, len(patientName)) |
|
dbcbffb889da
test_findscu_encoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
89
diff
changeset
|
3177 |
|
dbcbffb889da
test_findscu_encoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
89
diff
changeset
|
3178 tmp = ENCODINGS[name][1] |
|
dbcbffb889da
test_findscu_encoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
89
diff
changeset
|
3179 expected = TEST.encode(tmp, 'ignore').decode(tmp) |
|
dbcbffb889da
test_findscu_encoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
89
diff
changeset
|
3180 tmp = ENCODINGS[master][1] |
|
dbcbffb889da
test_findscu_encoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
89
diff
changeset
|
3181 expected = expected.encode(tmp, 'ignore').decode(tmp) |
|
dbcbffb889da
test_findscu_encoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
89
diff
changeset
|
3182 |
|
dbcbffb889da
test_findscu_encoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
89
diff
changeset
|
3183 self.assertEqual(expected, patientName[0].strip()) |
|
dbcbffb889da
test_findscu_encoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
89
diff
changeset
|
3184 |
|
dbcbffb889da
test_findscu_encoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
89
diff
changeset
|
3185 |
|
dbcbffb889da
test_findscu_encoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
89
diff
changeset
|
3186 a = DoPost(_REMOTE, '/tools/find', { 'Expand' : True, |
|
dbcbffb889da
test_findscu_encoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
89
diff
changeset
|
3187 'Level' : 'Study', |
|
dbcbffb889da
test_findscu_encoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
89
diff
changeset
|
3188 'Query' : { }}) |
|
dbcbffb889da
test_findscu_encoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
89
diff
changeset
|
3189 self.assertEqual(1, len(a)) |
|
dbcbffb889da
test_findscu_encoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
89
diff
changeset
|
3190 |
|
dbcbffb889da
test_findscu_encoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
89
diff
changeset
|
3191 tmp = ENCODINGS[name][1] |
|
dbcbffb889da
test_findscu_encoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
89
diff
changeset
|
3192 self.assertEqual(TEST.encode(tmp, 'ignore').decode(tmp), a[0]["PatientMainDicomTags"]["PatientName"]) |
|
96
272d1229cb49
test reconstruction of tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
95
diff
changeset
|
3193 |
|
272d1229cb49
test reconstruction of tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
95
diff
changeset
|
3194 |
|
272d1229cb49
test reconstruction of tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
95
diff
changeset
|
3195 def test_reconstruct(self): |
|
272d1229cb49
test reconstruction of tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
95
diff
changeset
|
3196 def CompareMainDicomTag(expected, instance, level, tag): |
|
272d1229cb49
test reconstruction of tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
95
diff
changeset
|
3197 self.assertEqual(expected, DoGet(_REMOTE, '/instances/%s/%s' % (instance, level))['MainDicomTags'][tag].strip()) |
|
272d1229cb49
test reconstruction of tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
95
diff
changeset
|
3198 |
|
272d1229cb49
test reconstruction of tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
95
diff
changeset
|
3199 a = UploadInstance(_REMOTE, 'DummyCT.dcm')['ID'] |
|
272d1229cb49
test reconstruction of tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
95
diff
changeset
|
3200 |
|
272d1229cb49
test reconstruction of tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
95
diff
changeset
|
3201 studies = DoGet(_REMOTE, '/studies/') |
|
272d1229cb49
test reconstruction of tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
95
diff
changeset
|
3202 self.assertEqual(1, len(DoGet(_REMOTE, '/patients/'))) |
|
272d1229cb49
test reconstruction of tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
95
diff
changeset
|
3203 self.assertEqual(1, len(studies)) |
|
272d1229cb49
test reconstruction of tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
95
diff
changeset
|
3204 self.assertEqual(1, len(DoGet(_REMOTE, '/series/'))) |
|
272d1229cb49
test reconstruction of tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
95
diff
changeset
|
3205 self.assertEqual(1, len(DoGet(_REMOTE, '/instances/'))) |
|
272d1229cb49
test reconstruction of tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
95
diff
changeset
|
3206 |
|
272d1229cb49
test reconstruction of tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
95
diff
changeset
|
3207 modified = DoPost(_REMOTE, '/studies/%s/modify' % studies[0], { |
|
272d1229cb49
test reconstruction of tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
95
diff
changeset
|
3208 "Replace" : { |
|
272d1229cb49
test reconstruction of tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
95
diff
changeset
|
3209 "StudyDescription" : "hello", |
|
272d1229cb49
test reconstruction of tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
95
diff
changeset
|
3210 "SeriesDescription" : "world", |
|
272d1229cb49
test reconstruction of tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
95
diff
changeset
|
3211 "SOPClassUID" : "test", |
|
272d1229cb49
test reconstruction of tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
95
diff
changeset
|
3212 "SOPInstanceUID" : "myid", |
|
272d1229cb49
test reconstruction of tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
95
diff
changeset
|
3213 }, |
| 119 | 3214 "Keep" : [ "StudyInstanceUID", "SeriesInstanceUID" ], |
| 3215 "Force" : True | |
|
96
272d1229cb49
test reconstruction of tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
95
diff
changeset
|
3216 }) |
|
272d1229cb49
test reconstruction of tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
95
diff
changeset
|
3217 |
|
272d1229cb49
test reconstruction of tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
95
diff
changeset
|
3218 instances = DoGet(_REMOTE, '/instances/') |
|
272d1229cb49
test reconstruction of tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
95
diff
changeset
|
3219 self.assertEqual(1, len(DoGet(_REMOTE, '/patients/'))) |
|
272d1229cb49
test reconstruction of tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
95
diff
changeset
|
3220 self.assertEqual(1, len(DoGet(_REMOTE, '/studies/'))) |
|
272d1229cb49
test reconstruction of tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
95
diff
changeset
|
3221 self.assertEqual(1, len(DoGet(_REMOTE, '/series/'))) |
|
272d1229cb49
test reconstruction of tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
95
diff
changeset
|
3222 self.assertEqual(2, len(instances)) |
|
272d1229cb49
test reconstruction of tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
95
diff
changeset
|
3223 |
|
272d1229cb49
test reconstruction of tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
95
diff
changeset
|
3224 b = instances[0] if instances[1] == a else instances[1] |
|
272d1229cb49
test reconstruction of tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
95
diff
changeset
|
3225 |
|
272d1229cb49
test reconstruction of tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
95
diff
changeset
|
3226 CompareMainDicomTag('Knee (R)', a, 'study', 'StudyDescription') |
|
272d1229cb49
test reconstruction of tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
95
diff
changeset
|
3227 CompareMainDicomTag('AX. FSE PD', a, 'series', 'SeriesDescription') |
|
272d1229cb49
test reconstruction of tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
95
diff
changeset
|
3228 CompareMainDicomTag('1.2.840.113619.2.176.2025.1499492.7040.1171286242.109', a, '', 'SOPInstanceUID') |
|
272d1229cb49
test reconstruction of tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
95
diff
changeset
|
3229 CompareMainDicomTag('myid', b, '', 'SOPInstanceUID') |
|
272d1229cb49
test reconstruction of tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
95
diff
changeset
|
3230 self.assertEqual('1.2.840.10008.5.1.4.1.1.4', DoGet(_REMOTE, '/instances/%s/metadata/SopClassUid' % a).strip()) |
|
272d1229cb49
test reconstruction of tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
95
diff
changeset
|
3231 self.assertEqual('test', DoGet(_REMOTE, '/instances/%s/metadata/SopClassUid' % b).strip()) |
|
272d1229cb49
test reconstruction of tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
95
diff
changeset
|
3232 |
|
272d1229cb49
test reconstruction of tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
95
diff
changeset
|
3233 DoPost(_REMOTE, '/instances/%s/reconstruct' % b, {}) |
|
272d1229cb49
test reconstruction of tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
95
diff
changeset
|
3234 |
|
272d1229cb49
test reconstruction of tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
95
diff
changeset
|
3235 CompareMainDicomTag('hello', a, 'study', 'StudyDescription') |
|
272d1229cb49
test reconstruction of tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
95
diff
changeset
|
3236 CompareMainDicomTag('world', a, 'series', 'SeriesDescription') |
|
272d1229cb49
test reconstruction of tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
95
diff
changeset
|
3237 CompareMainDicomTag('1.2.840.113619.2.176.2025.1499492.7040.1171286242.109', a, '', 'SOPInstanceUID') |
| 102 | 3238 |
| 104 | 3239 def test_httpClient_lua(self): |
| 3240 with open(GetDatabasePath('Lua/HttpClient.lua'), 'r') as f: | |
| 102 | 3241 result = DoPost(_REMOTE, '/tools/execute-script', f.read(), 'application/lua') |
| 3242 | |
| 3243 self.assertIn('OK', result) | |
|
107
fddb35f7289d
test_bitbucket_issue_44
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
104
diff
changeset
|
3244 |
|
fddb35f7289d
test_bitbucket_issue_44
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
104
diff
changeset
|
3245 |
|
fddb35f7289d
test_bitbucket_issue_44
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
104
diff
changeset
|
3246 def test_bitbucket_issue_44(self): |
|
fddb35f7289d
test_bitbucket_issue_44
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
104
diff
changeset
|
3247 # https://bitbucket.org/sjodogne/orthanc/issues/44/bad-interpretation-of-photometric |
|
fddb35f7289d
test_bitbucket_issue_44
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
104
diff
changeset
|
3248 UploadInstance(_REMOTE, 'Issue44/Monochrome1.dcm') |
|
fddb35f7289d
test_bitbucket_issue_44
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
104
diff
changeset
|
3249 UploadInstance(_REMOTE, 'Issue44/Monochrome2.dcm') |
|
fddb35f7289d
test_bitbucket_issue_44
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
104
diff
changeset
|
3250 |
|
fddb35f7289d
test_bitbucket_issue_44
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
104
diff
changeset
|
3251 # dcmcjpeg +ua +eb Monochrome1.dcm Monochrome1-Jpeg.dcm |
|
fddb35f7289d
test_bitbucket_issue_44
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
104
diff
changeset
|
3252 UploadInstance(_REMOTE, 'Issue44/Monochrome1-Jpeg.dcm') |
|
fddb35f7289d
test_bitbucket_issue_44
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
104
diff
changeset
|
3253 |
|
fddb35f7289d
test_bitbucket_issue_44
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
104
diff
changeset
|
3254 # dcmcjpeg +ua Monochrome1.dcm Monochrome1-JpegLS.dcm |
|
fddb35f7289d
test_bitbucket_issue_44
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
104
diff
changeset
|
3255 UploadInstance(_REMOTE, 'Issue44/Monochrome1-JpegLS.dcm') |
|
fddb35f7289d
test_bitbucket_issue_44
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
104
diff
changeset
|
3256 |
|
fddb35f7289d
test_bitbucket_issue_44
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
104
diff
changeset
|
3257 monochrome1 = 'bcdd600a-a6a9c522-5f0a6e84-8657c9f3-b76e59b7' |
|
fddb35f7289d
test_bitbucket_issue_44
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
104
diff
changeset
|
3258 monochrome1_jpeg = '9df82121-208a2da8-0038674a-3d7a773b-b7008cd2' |
|
fddb35f7289d
test_bitbucket_issue_44
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
104
diff
changeset
|
3259 monochrome1_jpegls = '0486d1a2-9165573f-b1976b20-e927b016-6b8d67ab' |
|
fddb35f7289d
test_bitbucket_issue_44
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
104
diff
changeset
|
3260 monochrome2 = 'f00947b7-f61f7164-c93414d1-c6fbda6a-9e92ed20' |
|
fddb35f7289d
test_bitbucket_issue_44
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
104
diff
changeset
|
3261 |
|
fddb35f7289d
test_bitbucket_issue_44
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
104
diff
changeset
|
3262 for i in [ monochrome1, monochrome1_jpeg, monochrome1_jpegls ]: |
|
fddb35f7289d
test_bitbucket_issue_44
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
104
diff
changeset
|
3263 im = GetImage(_REMOTE, '/instances/%s/preview' % i) |
|
fddb35f7289d
test_bitbucket_issue_44
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
104
diff
changeset
|
3264 self.assertEqual("L", im.mode) |
|
fddb35f7289d
test_bitbucket_issue_44
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
104
diff
changeset
|
3265 self.assertEqual(2010, im.size[0]) |
|
fddb35f7289d
test_bitbucket_issue_44
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
104
diff
changeset
|
3266 self.assertEqual(2446, im.size[1]) |
|
fddb35f7289d
test_bitbucket_issue_44
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
104
diff
changeset
|
3267 |
|
fddb35f7289d
test_bitbucket_issue_44
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
104
diff
changeset
|
3268 # This is the chest image, with MONOCHROME1. Raw background is |
|
fddb35f7289d
test_bitbucket_issue_44
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
104
diff
changeset
|
3269 # white (255), should be rendered as black (0) => invert |
|
fddb35f7289d
test_bitbucket_issue_44
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
104
diff
changeset
|
3270 if i == monochrome1_jpeg: |
|
fddb35f7289d
test_bitbucket_issue_44
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
104
diff
changeset
|
3271 # Add some tolerance because of JPEG destructive compression |
|
fddb35f7289d
test_bitbucket_issue_44
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
104
diff
changeset
|
3272 self.assertGreater(10, im.getpixel((0,0))) |
|
fddb35f7289d
test_bitbucket_issue_44
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
104
diff
changeset
|
3273 else: |
|
fddb35f7289d
test_bitbucket_issue_44
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
104
diff
changeset
|
3274 self.assertEqual(0, im.getpixel((0,0))) |
|
fddb35f7289d
test_bitbucket_issue_44
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
104
diff
changeset
|
3275 |
|
fddb35f7289d
test_bitbucket_issue_44
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
104
diff
changeset
|
3276 im = GetImage(_REMOTE, '/instances/%s/preview' % monochrome2) |
|
fddb35f7289d
test_bitbucket_issue_44
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
104
diff
changeset
|
3277 self.assertEqual("L", im.mode) |
|
fddb35f7289d
test_bitbucket_issue_44
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
104
diff
changeset
|
3278 self.assertEqual(1572, im.size[0]) |
|
fddb35f7289d
test_bitbucket_issue_44
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
104
diff
changeset
|
3279 self.assertEqual(2010, im.size[1]) |
|
fddb35f7289d
test_bitbucket_issue_44
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
104
diff
changeset
|
3280 |
|
fddb35f7289d
test_bitbucket_issue_44
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
104
diff
changeset
|
3281 # This is the key image, with MONOCHROME2. Raw background is |
|
fddb35f7289d
test_bitbucket_issue_44
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
104
diff
changeset
|
3282 # white (255), should be rendered as white (255) |
|
fddb35f7289d
test_bitbucket_issue_44
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
104
diff
changeset
|
3283 self.assertEqual(255, im.getpixel((0,0))) |
|
111
7005cdeeb704
test_bitbucket_issue_42
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
107
diff
changeset
|
3284 |
|
7005cdeeb704
test_bitbucket_issue_42
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
107
diff
changeset
|
3285 |
|
7005cdeeb704
test_bitbucket_issue_42
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
107
diff
changeset
|
3286 def test_bitbucket_issue_42(self): |
|
7005cdeeb704
test_bitbucket_issue_42
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
107
diff
changeset
|
3287 # https://bitbucket.org/sjodogne/orthanc/issues/42/fails-to-modify-a-dicom-video-file |
| 123 | 3288 # This test fails on DCMTK 3.6.0, but succeeds in DCMTK 3.6.1 snapshots and DCMTK 3.6.2 |
|
111
7005cdeeb704
test_bitbucket_issue_42
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
107
diff
changeset
|
3289 UploadInstance(_REMOTE, 'Issue42.dcm')['ID'] |
|
7005cdeeb704
test_bitbucket_issue_42
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
107
diff
changeset
|
3290 modified = DoPost(_REMOTE, |
|
7005cdeeb704
test_bitbucket_issue_42
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
107
diff
changeset
|
3291 '/patients/da128605-e040d0c4-310615d2-3475da63-df2d1ef4/modify', |
| 119 | 3292 '{"Replace":{"PatientID":"Hello","PatientName":"Sample patient name"},"Force":true}', |
|
111
7005cdeeb704
test_bitbucket_issue_42
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
107
diff
changeset
|
3293 'application/json') |
|
7005cdeeb704
test_bitbucket_issue_42
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
107
diff
changeset
|
3294 self.assertTrue('PatientID' in modified) |
|
113
3e5934363e76
test_rest_find_limitµ
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
112
diff
changeset
|
3295 |
|
3e5934363e76
test_rest_find_limitµ
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
112
diff
changeset
|
3296 |
|
3e5934363e76
test_rest_find_limitµ
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
112
diff
changeset
|
3297 def test_rest_find_limit(self): |
|
3e5934363e76
test_rest_find_limitµ
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
112
diff
changeset
|
3298 # Check the "Since" and "Limit" parameters in URI "/tools/find" |
|
3e5934363e76
test_rest_find_limitµ
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
112
diff
changeset
|
3299 # Related to issue 53: https://bitbucket.org/sjodogne/orthanc/issues/53 |
|
111
7005cdeeb704
test_bitbucket_issue_42
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
107
diff
changeset
|
3300 |
|
113
3e5934363e76
test_rest_find_limitµ
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parents:
112
diff
changeset
|
3301 # Upload 6 instances |
|
3e5934363e76
test_rest_find_limitµ
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
112
diff
changeset
|
3302 brainix = [] |
|
3e5934363e76
test_rest_find_limitµ
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
112
diff
changeset
|
3303 knee = [] |
|
3e5934363e76
test_rest_find_limitµ
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
112
diff
changeset
|
3304 for i in range(2): |
|
3e5934363e76
test_rest_find_limitµ
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
112
diff
changeset
|
3305 brainix.append(UploadInstance(_REMOTE, 'Brainix/Flair/IM-0001-000%d.dcm' % (i + 1)) ['ID']) |
|
3e5934363e76
test_rest_find_limitµ
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
112
diff
changeset
|
3306 brainix.append(UploadInstance(_REMOTE, 'Brainix/Epi/IM-0001-000%d.dcm' % (i + 1)) ['ID']) |
|
3e5934363e76
test_rest_find_limitµ
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
112
diff
changeset
|
3307 knee.append(UploadInstance(_REMOTE, 'Knee/T1/IM-0001-000%d.dcm' % (i + 1)) ['ID']) |
|
3e5934363e76
test_rest_find_limitµ
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
112
diff
changeset
|
3308 |
|
3e5934363e76
test_rest_find_limitµ
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
112
diff
changeset
|
3309 # Check using BRAINIX |
|
3e5934363e76
test_rest_find_limitµ
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
112
diff
changeset
|
3310 a = DoPost(_REMOTE, '/tools/find', { 'Level' : 'Instance', |
|
3e5934363e76
test_rest_find_limitµ
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
112
diff
changeset
|
3311 'Query' : { 'PatientName' : 'B*' }, |
|
3e5934363e76
test_rest_find_limitµ
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
112
diff
changeset
|
3312 'Limit' : 10 }) |
|
3e5934363e76
test_rest_find_limitµ
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
112
diff
changeset
|
3313 self.assertEqual(4, len(a)) |
|
3e5934363e76
test_rest_find_limitµ
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
112
diff
changeset
|
3314 |
|
3e5934363e76
test_rest_find_limitµ
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
112
diff
changeset
|
3315 a = DoPost(_REMOTE, '/tools/find', { 'Level' : 'Instance', |
|
3e5934363e76
test_rest_find_limitµ
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
112
diff
changeset
|
3316 'Query' : { 'PatientName' : 'B*' }, |
|
3e5934363e76
test_rest_find_limitµ
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
112
diff
changeset
|
3317 'Limit' : 4 }) |
|
3e5934363e76
test_rest_find_limitµ
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
112
diff
changeset
|
3318 self.assertEqual(4, len(a)) |
|
3e5934363e76
test_rest_find_limitµ
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
112
diff
changeset
|
3319 |
|
3e5934363e76
test_rest_find_limitµ
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
112
diff
changeset
|
3320 a = DoPost(_REMOTE, '/tools/find', { 'Level' : 'Instance', |
|
3e5934363e76
test_rest_find_limitµ
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
112
diff
changeset
|
3321 'Query' : { 'PatientName' : 'B*' }, |
|
3e5934363e76
test_rest_find_limitµ
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
112
diff
changeset
|
3322 'Since' : 2, |
|
3e5934363e76
test_rest_find_limitµ
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
112
diff
changeset
|
3323 'Limit' : 4 }) |
|
3e5934363e76
test_rest_find_limitµ
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
112
diff
changeset
|
3324 self.assertEqual(2, len(a)) |
|
3e5934363e76
test_rest_find_limitµ
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
112
diff
changeset
|
3325 |
|
3e5934363e76
test_rest_find_limitµ
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
112
diff
changeset
|
3326 a = DoPost(_REMOTE, '/tools/find', { 'Level' : 'Instance', |
|
3e5934363e76
test_rest_find_limitµ
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
112
diff
changeset
|
3327 'Query' : { 'PatientName' : 'B*' }, |
|
3e5934363e76
test_rest_find_limitµ
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
112
diff
changeset
|
3328 'Limit' : 3 }) |
|
3e5934363e76
test_rest_find_limitµ
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
112
diff
changeset
|
3329 self.assertEqual(3, len(a)) |
|
3e5934363e76
test_rest_find_limitµ
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
112
diff
changeset
|
3330 |
|
3e5934363e76
test_rest_find_limitµ
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
112
diff
changeset
|
3331 b = [] |
|
3e5934363e76
test_rest_find_limitµ
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
112
diff
changeset
|
3332 for i in range(4): |
|
3e5934363e76
test_rest_find_limitµ
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
112
diff
changeset
|
3333 a = DoPost(_REMOTE, '/tools/find', { 'Level' : 'Instance', |
|
3e5934363e76
test_rest_find_limitµ
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
112
diff
changeset
|
3334 'Query' : { 'PatientName' : 'B*' }, |
|
3e5934363e76
test_rest_find_limitµ
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
112
diff
changeset
|
3335 'Limit' : 1, |
|
3e5934363e76
test_rest_find_limitµ
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
112
diff
changeset
|
3336 'Since' : i }) |
|
3e5934363e76
test_rest_find_limitµ
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
112
diff
changeset
|
3337 self.assertEqual(1, len(a)) |
|
3e5934363e76
test_rest_find_limitµ
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
112
diff
changeset
|
3338 b.append(a[0]) |
|
3e5934363e76
test_rest_find_limitµ
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
112
diff
changeset
|
3339 |
|
3e5934363e76
test_rest_find_limitµ
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
112
diff
changeset
|
3340 # Check whether the two sets are equal through symmetric difference |
|
3e5934363e76
test_rest_find_limitµ
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
112
diff
changeset
|
3341 self.assertEqual(0, len(set(b) ^ set(brainix))) |
|
3e5934363e76
test_rest_find_limitµ
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
112
diff
changeset
|
3342 |
|
3e5934363e76
test_rest_find_limitµ
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parents:
112
diff
changeset
|
3343 # Check using KNEE |
|
3e5934363e76
test_rest_find_limitµ
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parents:
112
diff
changeset
|
3344 a = DoPost(_REMOTE, '/tools/find', { 'Level' : 'Instance', |
|
3e5934363e76
test_rest_find_limitµ
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
112
diff
changeset
|
3345 'Query' : { 'PatientName' : 'K*' }, |
|
3e5934363e76
test_rest_find_limitµ
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
112
diff
changeset
|
3346 'Limit' : 10 }) |
|
3e5934363e76
test_rest_find_limitµ
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
112
diff
changeset
|
3347 self.assertEqual(2, len(a)) |
|
3e5934363e76
test_rest_find_limitµ
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
112
diff
changeset
|
3348 |
|
3e5934363e76
test_rest_find_limitµ
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
112
diff
changeset
|
3349 a = DoPost(_REMOTE, '/tools/find', { 'Level' : 'Instance', |
|
3e5934363e76
test_rest_find_limitµ
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parents:
112
diff
changeset
|
3350 'Query' : { 'PatientName' : 'K*' }, |
|
3e5934363e76
test_rest_find_limitµ
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parents:
112
diff
changeset
|
3351 'Limit' : 2 }) |
|
3e5934363e76
test_rest_find_limitµ
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parents:
112
diff
changeset
|
3352 self.assertEqual(2, len(a)) |
|
3e5934363e76
test_rest_find_limitµ
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
112
diff
changeset
|
3353 |
|
3e5934363e76
test_rest_find_limitµ
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
112
diff
changeset
|
3354 b = [] |
|
3e5934363e76
test_rest_find_limitµ
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
112
diff
changeset
|
3355 for i in range(2): |
|
3e5934363e76
test_rest_find_limitµ
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
112
diff
changeset
|
3356 a = DoPost(_REMOTE, '/tools/find', { 'Level' : 'Instance', |
|
3e5934363e76
test_rest_find_limitµ
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parents:
112
diff
changeset
|
3357 'Query' : { 'PatientName' : 'K*' }, |
|
3e5934363e76
test_rest_find_limitµ
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
112
diff
changeset
|
3358 'Limit' : 1, |
|
3e5934363e76
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112
diff
changeset
|
3359 'Since' : i }) |
|
3e5934363e76
test_rest_find_limitµ
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
112
diff
changeset
|
3360 self.assertEqual(1, len(a)) |
|
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diff
changeset
|
3361 b.append(a[0]) |
|
3e5934363e76
test_rest_find_limitµ
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parents:
112
diff
changeset
|
3362 |
|
3e5934363e76
test_rest_find_limitµ
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parents:
112
diff
changeset
|
3363 self.assertEqual(0, len(set(b) ^ set(knee))) |
|
115
45ebfab035b7
test_bitbucket_issue_46
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
113
diff
changeset
|
3364 |
|
45ebfab035b7
test_bitbucket_issue_46
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
113
diff
changeset
|
3365 |
|
45ebfab035b7
test_bitbucket_issue_46
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113
diff
changeset
|
3366 def test_bitbucket_issue_46(self): |
|
45ebfab035b7
test_bitbucket_issue_46
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parents:
113
diff
changeset
|
3367 # "PHI remaining after anonymization" |
|
45ebfab035b7
test_bitbucket_issue_46
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113
diff
changeset
|
3368 # https://bitbucket.org/sjodogne/orthanc/issues/46 |
|
45ebfab035b7
test_bitbucket_issue_46
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parents:
113
diff
changeset
|
3369 |
|
45ebfab035b7
test_bitbucket_issue_46
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parents:
113
diff
changeset
|
3370 def GetAnonymizedTags(study, version): |
|
45ebfab035b7
test_bitbucket_issue_46
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parents:
113
diff
changeset
|
3371 anonymized = DoPost(_REMOTE, '/studies/%s/anonymize' % study, |
|
45ebfab035b7
test_bitbucket_issue_46
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parents:
113
diff
changeset
|
3372 { 'DicomVersion' : version }, |
|
45ebfab035b7
test_bitbucket_issue_46
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parents:
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diff
changeset
|
3373 'application/json') ['ID'] |
|
45ebfab035b7
test_bitbucket_issue_46
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parents:
113
diff
changeset
|
3374 a = DoGet(_REMOTE, '/studies/%s/instances' % anonymized) |
|
45ebfab035b7
test_bitbucket_issue_46
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parents:
113
diff
changeset
|
3375 self.assertEqual(1, len(a)) |
|
45ebfab035b7
test_bitbucket_issue_46
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
113
diff
changeset
|
3376 |
|
45ebfab035b7
test_bitbucket_issue_46
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parents:
113
diff
changeset
|
3377 instance = a[0]['ID'] |
|
45ebfab035b7
test_bitbucket_issue_46
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
113
diff
changeset
|
3378 |
|
45ebfab035b7
test_bitbucket_issue_46
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
113
diff
changeset
|
3379 return (instance, DoGet(_REMOTE, '/instances/%s/tags' % instance)) |
|
45ebfab035b7
test_bitbucket_issue_46
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
113
diff
changeset
|
3380 |
|
45ebfab035b7
test_bitbucket_issue_46
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
113
diff
changeset
|
3381 UploadInstance(_REMOTE, 'Issue44/Monochrome1.dcm') |
|
45ebfab035b7
test_bitbucket_issue_46
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
113
diff
changeset
|
3382 origStudy = '6068a14b-d4df27af-9ec22145-538772d8-74f228ff' |
|
45ebfab035b7
test_bitbucket_issue_46
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
113
diff
changeset
|
3383 |
|
45ebfab035b7
test_bitbucket_issue_46
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parents:
113
diff
changeset
|
3384 # Add the 0032,1033 (Requesting Service) and the 0010,1060 |
|
45ebfab035b7
test_bitbucket_issue_46
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parents:
113
diff
changeset
|
3385 # (Patient's Mother's Birth Name) tags |
|
45ebfab035b7
test_bitbucket_issue_46
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parents:
113
diff
changeset
|
3386 newStudy = DoPost(_REMOTE, '/studies/%s/modify' % origStudy, |
|
45ebfab035b7
test_bitbucket_issue_46
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parents:
113
diff
changeset
|
3387 '{"Replace":{"0010,1060":"OSIMIS","0032,1033":"MOTHER"}}', |
|
45ebfab035b7
test_bitbucket_issue_46
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parents:
113
diff
changeset
|
3388 'application/json')['ID'] |
|
45ebfab035b7
test_bitbucket_issue_46
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
113
diff
changeset
|
3389 |
|
45ebfab035b7
test_bitbucket_issue_46
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parents:
113
diff
changeset
|
3390 # Use Table E.1-1 from PS 3.15-2008 |
|
45ebfab035b7
test_bitbucket_issue_46
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parents:
113
diff
changeset
|
3391 # https://raw.githubusercontent.com/jodogne/dicom-specification/master/2008/08_15pu.pdf |
|
45ebfab035b7
test_bitbucket_issue_46
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
113
diff
changeset
|
3392 (instance, tags) = GetAnonymizedTags(newStudy, "2008") |
|
45ebfab035b7
test_bitbucket_issue_46
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
113
diff
changeset
|
3393 self.assertTrue('0032,1033' in tags) |
|
45ebfab035b7
test_bitbucket_issue_46
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
113
diff
changeset
|
3394 self.assertTrue('0010,1060' in tags) |
|
45ebfab035b7
test_bitbucket_issue_46
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
113
diff
changeset
|
3395 |
|
45ebfab035b7
test_bitbucket_issue_46
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
113
diff
changeset
|
3396 # Use Table E.1-1 from PS 3.15-2011 (only if Orthanc >= 1.2.1) |
|
45ebfab035b7
test_bitbucket_issue_46
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parents:
113
diff
changeset
|
3397 # https://raw.githubusercontent.com/jodogne/dicom-specification/master/2008/08_15pu.pdf |
|
45ebfab035b7
test_bitbucket_issue_46
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
113
diff
changeset
|
3398 (instance, tags) = GetAnonymizedTags(newStudy, "2017c") |
|
45ebfab035b7
test_bitbucket_issue_46
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
113
diff
changeset
|
3399 self.assertFalse('0032,1033' in tags) |
|
45ebfab035b7
test_bitbucket_issue_46
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parents:
113
diff
changeset
|
3400 self.assertFalse('0010,1060' in tags) |
|
45ebfab035b7
test_bitbucket_issue_46
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
113
diff
changeset
|
3401 |
|
45ebfab035b7
test_bitbucket_issue_46
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
113
diff
changeset
|
3402 t = {} |
|
45ebfab035b7
test_bitbucket_issue_46
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parents:
113
diff
changeset
|
3403 for (key, value) in tags.iteritems(): |
|
45ebfab035b7
test_bitbucket_issue_46
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parents:
113
diff
changeset
|
3404 t[value['Name']] = value['Value'] |
|
45ebfab035b7
test_bitbucket_issue_46
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parents:
113
diff
changeset
|
3405 |
|
45ebfab035b7
test_bitbucket_issue_46
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parents:
113
diff
changeset
|
3406 self.assertEqual('', t['StudyDate']) # Type 1 tag => cleared |
|
45ebfab035b7
test_bitbucket_issue_46
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parents:
113
diff
changeset
|
3407 self.assertEqual('', t['StudyTime']) # Type 1 tag => cleared |
|
45ebfab035b7
test_bitbucket_issue_46
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
113
diff
changeset
|
3408 self.assertEqual('', t['PatientSex']) # Type 1 tag => cleared |
|
45ebfab035b7
test_bitbucket_issue_46
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
113
diff
changeset
|
3409 self.assertFalse('SeriesDate' in t) # Type 3 tag => null |
|
45ebfab035b7
test_bitbucket_issue_46
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parents:
113
diff
changeset
|
3410 self.assertFalse('SeriesTime' in t) # Type 3 tag => null |
|
45ebfab035b7
test_bitbucket_issue_46
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
113
diff
changeset
|
3411 |
|
45ebfab035b7
test_bitbucket_issue_46
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
113
diff
changeset
|
3412 with tempfile.NamedTemporaryFile(delete = True) as f: |
|
45ebfab035b7
test_bitbucket_issue_46
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parents:
113
diff
changeset
|
3413 # Run "dciodvfy" on the anonymized file to be sure it is still valid |
|
45ebfab035b7
test_bitbucket_issue_46
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parents:
113
diff
changeset
|
3414 f.write(DoGet(_REMOTE, '/instances/%s/file' % instance)) |
|
45ebfab035b7
test_bitbucket_issue_46
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
113
diff
changeset
|
3415 f.flush() |
|
45ebfab035b7
test_bitbucket_issue_46
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
113
diff
changeset
|
3416 subprocess.check_output([ FindExecutable('dciodvfy'), f.name ], |
|
45ebfab035b7
test_bitbucket_issue_46
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
113
diff
changeset
|
3417 stderr = subprocess.STDOUT).split('\n') |
|
118
a954c535fef6
test_bitbucket_issue_55
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
117
diff
changeset
|
3418 |
|
a954c535fef6
test_bitbucket_issue_55
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
117
diff
changeset
|
3419 |
|
a954c535fef6
test_bitbucket_issue_55
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
117
diff
changeset
|
3420 def test_bitbucket_issue_55(self): |
|
a954c535fef6
test_bitbucket_issue_55
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parents:
117
diff
changeset
|
3421 def Run(modify, query): |
|
a954c535fef6
test_bitbucket_issue_55
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parents:
117
diff
changeset
|
3422 self.assertEqual(1, len(DoGet(_REMOTE, '/instances'))) |
|
a954c535fef6
test_bitbucket_issue_55
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
117
diff
changeset
|
3423 |
|
a954c535fef6
test_bitbucket_issue_55
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parents:
117
diff
changeset
|
3424 operation = 'modify' if modify else 'anonymize' |
|
a954c535fef6
test_bitbucket_issue_55
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
117
diff
changeset
|
3425 |
|
a954c535fef6
test_bitbucket_issue_55
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
117
diff
changeset
|
3426 self.assertRaises(Exception, lambda: DoPost( |
|
a954c535fef6
test_bitbucket_issue_55
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parents:
117
diff
changeset
|
3427 _REMOTE, '/studies/%s/%s' % (study, operation), query)) |
|
a954c535fef6
test_bitbucket_issue_55
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
117
diff
changeset
|
3428 self.assertEqual(1, len(DoGet(_REMOTE, '/instances'))) |
|
a954c535fef6
test_bitbucket_issue_55
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
117
diff
changeset
|
3429 |
|
a954c535fef6
test_bitbucket_issue_55
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
117
diff
changeset
|
3430 query["Force"] = True |
|
a954c535fef6
test_bitbucket_issue_55
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
117
diff
changeset
|
3431 a = DoPost(_REMOTE, '/studies/%s/%s' % (study, operation), query)['Path'] |
|
a954c535fef6
test_bitbucket_issue_55
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
117
diff
changeset
|
3432 self.assertEqual(2, len(DoGet(_REMOTE, '/instances'))) |
|
a954c535fef6
test_bitbucket_issue_55
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
117
diff
changeset
|
3433 DoDelete(_REMOTE, a) |
|
a954c535fef6
test_bitbucket_issue_55
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
117
diff
changeset
|
3434 |
|
a954c535fef6
test_bitbucket_issue_55
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
117
diff
changeset
|
3435 self.assertEqual(1, len(DoGet(_REMOTE, '/instances'))) |
|
a954c535fef6
test_bitbucket_issue_55
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
117
diff
changeset
|
3436 |
|
a954c535fef6
test_bitbucket_issue_55
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
117
diff
changeset
|
3437 UploadInstance(_REMOTE, 'DummyCT.dcm') |
|
a954c535fef6
test_bitbucket_issue_55
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
117
diff
changeset
|
3438 study = 'b9c08539-26f93bde-c81ab0d7-bffaf2cb-a4d0bdd0' |
|
a954c535fef6
test_bitbucket_issue_55
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
117
diff
changeset
|
3439 |
|
a954c535fef6
test_bitbucket_issue_55
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parents:
117
diff
changeset
|
3440 Run(True, { "Replace" : { "StudyInstanceUID" : "world" } }) |
|
a954c535fef6
test_bitbucket_issue_55
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parents:
117
diff
changeset
|
3441 Run(True, { "Replace" : { "SeriesInstanceUID" : "world" } }) |
|
a954c535fef6
test_bitbucket_issue_55
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117
diff
changeset
|
3442 Run(True, { "Replace" : { "SOPInstanceUID" : "world" } }) |
|
a954c535fef6
test_bitbucket_issue_55
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diff
changeset
|
3443 |
|
a954c535fef6
test_bitbucket_issue_55
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diff
changeset
|
3444 Run(False, { "Keep" : [ "StudyInstanceUID" ]}) |
|
a954c535fef6
test_bitbucket_issue_55
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diff
changeset
|
3445 Run(False, { "Keep" : [ "SeriesInstanceUID" ]}) |
|
a954c535fef6
test_bitbucket_issue_55
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diff
changeset
|
3446 Run(False, { "Keep" : [ "SOPInstanceUID" ]}) |
|
a954c535fef6
test_bitbucket_issue_55
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diff
changeset
|
3447 |
|
a954c535fef6
test_bitbucket_issue_55
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diff
changeset
|
3448 Run(False, { "Replace" : { "StudyInstanceUID" : "world" } }) |
|
a954c535fef6
test_bitbucket_issue_55
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diff
changeset
|
3449 Run(False, { "Replace" : { "SeriesInstanceUID" : "world" } }) |
|
a954c535fef6
test_bitbucket_issue_55
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diff
changeset
|
3450 Run(False, { "Replace" : { "SOPInstanceUID" : "world" } }) |
|
a954c535fef6
test_bitbucket_issue_55
Sebastien Jodogne <s.jodogne@gmail.com>
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diff
changeset
|
3451 |
|
120
fce08afe6b2d
test_bitbucket_issue_56
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parents:
119
diff
changeset
|
3452 |
|
fce08afe6b2d
test_bitbucket_issue_56
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119
diff
changeset
|
3453 def test_bitbucket_issue_56(self): |
|
fce08afe6b2d
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diff
changeset
|
3454 # Case-insensitive matching over accents. This test assumes |
|
fce08afe6b2d
test_bitbucket_issue_56
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diff
changeset
|
3455 # that the "CaseSensitivePN" configuration option of Orthanc |
|
fce08afe6b2d
test_bitbucket_issue_56
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diff
changeset
|
3456 # is set to "false" (default value). |
|
fce08afe6b2d
test_bitbucket_issue_56
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diff
changeset
|
3457 # https://bitbucket.org/sjodogne/orthanc/issues/56 |
|
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test_bitbucket_issue_56
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diff
changeset
|
3458 |
|
fce08afe6b2d
test_bitbucket_issue_56
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diff
changeset
|
3459 def Check(name, expected, expectedSensitive): |
|
fce08afe6b2d
test_bitbucket_issue_56
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parents:
119
diff
changeset
|
3460 a = CallFindScu([ '-k', '0008,0005=ISO_IR 192', # Use UTF-8 |
|
fce08afe6b2d
test_bitbucket_issue_56
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diff
changeset
|
3461 '-k', '0008,0052=PATIENT', |
|
fce08afe6b2d
test_bitbucket_issue_56
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diff
changeset
|
3462 '-k', 'PatientName=%s' % name ]) |
|
fce08afe6b2d
test_bitbucket_issue_56
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diff
changeset
|
3463 patientNames = re.findall('\(0010,0010\).*?\[(.*?)\]', a) |
|
fce08afe6b2d
test_bitbucket_issue_56
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diff
changeset
|
3464 self.assertEqual(expected, len(patientNames)) |
|
fce08afe6b2d
test_bitbucket_issue_56
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parents:
119
diff
changeset
|
3465 |
|
fce08afe6b2d
test_bitbucket_issue_56
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
119
diff
changeset
|
3466 a = DoPost(_REMOTE, '/tools/find', { 'Level' : 'Patient', |
|
fce08afe6b2d
test_bitbucket_issue_56
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
119
diff
changeset
|
3467 'CaseSensitive' : False, |
|
fce08afe6b2d
test_bitbucket_issue_56
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
119
diff
changeset
|
3468 'Query' : { 'PatientName' : name }}) |
|
fce08afe6b2d
test_bitbucket_issue_56
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
119
diff
changeset
|
3469 self.assertEqual(expected, len(a)) |
|
fce08afe6b2d
test_bitbucket_issue_56
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
119
diff
changeset
|
3470 |
|
fce08afe6b2d
test_bitbucket_issue_56
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
119
diff
changeset
|
3471 a = DoPost(_REMOTE, '/tools/find', { 'Level' : 'Patient', |
|
fce08afe6b2d
test_bitbucket_issue_56
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
119
diff
changeset
|
3472 'CaseSensitive' : True, |
|
fce08afe6b2d
test_bitbucket_issue_56
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
119
diff
changeset
|
3473 'Query' : { 'PatientName' : name }}) |
|
fce08afe6b2d
test_bitbucket_issue_56
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
119
diff
changeset
|
3474 self.assertEqual(expectedSensitive, len(a)) |
|
fce08afe6b2d
test_bitbucket_issue_56
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
119
diff
changeset
|
3475 |
|
fce08afe6b2d
test_bitbucket_issue_56
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
119
diff
changeset
|
3476 UploadInstance(_REMOTE, 'Encodings/Lena-latin1.dcm') |
|
fce08afe6b2d
test_bitbucket_issue_56
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
119
diff
changeset
|
3477 |
|
fce08afe6b2d
test_bitbucket_issue_56
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
119
diff
changeset
|
3478 # WildcardConstraint |
|
fce08afe6b2d
test_bitbucket_issue_56
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
119
diff
changeset
|
3479 Check('TeSt*', 1, 0) |
|
fce08afe6b2d
test_bitbucket_issue_56
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
119
diff
changeset
|
3480 Check('TeSt-a*', 0, 0) |
|
fce08afe6b2d
test_bitbucket_issue_56
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
119
diff
changeset
|
3481 Check('TeSt-É*', 1, 0) |
|
fce08afe6b2d
test_bitbucket_issue_56
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
119
diff
changeset
|
3482 Check('TeSt-é*', 1, 0) |
|
fce08afe6b2d
test_bitbucket_issue_56
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
119
diff
changeset
|
3483 Check('Test-é*', 1, 1) |
|
fce08afe6b2d
test_bitbucket_issue_56
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
119
diff
changeset
|
3484 |
|
fce08afe6b2d
test_bitbucket_issue_56
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
119
diff
changeset
|
3485 # ListConstraint |
|
fce08afe6b2d
test_bitbucket_issue_56
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
119
diff
changeset
|
3486 Check('Test-éüäöò\\nope', 1, 1) |
|
fce08afe6b2d
test_bitbucket_issue_56
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
119
diff
changeset
|
3487 Check('Test-ÉÜÄÖÒ\\nope', 1, 0) |
|
fce08afe6b2d
test_bitbucket_issue_56
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
119
diff
changeset
|
3488 |
|
fce08afe6b2d
test_bitbucket_issue_56
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
119
diff
changeset
|
3489 # ValueConstraint |
|
fce08afe6b2d
test_bitbucket_issue_56
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
119
diff
changeset
|
3490 Check('Test-éüäöò', 1, 1) |
|
fce08afe6b2d
test_bitbucket_issue_56
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
119
diff
changeset
|
3491 Check('Test-ÉÜÄÖÒ', 1, 0) |
|
fce08afe6b2d
test_bitbucket_issue_56
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
119
diff
changeset
|
3492 |
| 125 | 3493 |
| 3494 def test_gbk_alias(self): | |
| 3495 # https://groups.google.com/d/msg/orthanc-users/WMM8LMbjpUc/02-1f_yFCgAJ | |
| 3496 # This test fails on Orthanc <= 1.3.0 | |
| 3497 i = UploadInstance(_REMOTE, '2017-09-19-GBK-Tumashu.dcm')['ID'] | |
| 3498 tags = DoGet(_REMOTE, '/instances/%s/tags?simplify' % i) | |
| 3499 self.assertEqual(tags['PatientName'], u'徐浩凯') | |
| 3500 self.assertEqual(tags['InstitutionName'], u'灌云县疾病预防控制中心') | |
| 126 | 3501 |
| 3502 | |
| 3503 def test_long_tag(self): | |
| 3504 i = UploadInstance(_REMOTE, 'DummyCTWithLongTag.dcm')['ID'] | |
| 3505 series = 'f2635388-f01d497a-15f7c06b-ad7dba06-c4c599fe' | |
| 3506 | |
| 3507 tags = DoGet(_REMOTE, '/instances/%s/tags' % i) | |
| 3508 self.assertTrue('0018,1020' in tags) | |
| 3509 self.assertEqual('SoftwareVersions', tags['0018,1020']['Name']) | |
| 3510 self.assertEqual('TooLong', tags['0018,1020']['Type']) | |
| 3511 self.assertEqual(None, tags['0018,1020']['Value']) | |
| 3512 | |
| 3513 tags = DoGet(_REMOTE, '/instances/%s/tags?ignore-length=0018-1020' % i) | |
| 3514 self.assertTrue('0018,1020' in tags) | |
| 3515 self.assertEqual('SoftwareVersions', tags['0018,1020']['Name']) | |
| 3516 self.assertEqual('String', tags['0018,1020']['Type']) | |
| 3517 self.assertTrue(tags['0018,1020']['Value'].startswith('Lorem ipsum dolor sit amet')) | |
| 3518 | |
| 3519 tags = DoGet(_REMOTE, '/instances/%s/tags?simplify' % i) | |
| 3520 self.assertTrue('SoftwareVersions' in tags) | |
| 3521 self.assertEqual(None, tags['SoftwareVersions']) | |
| 3522 self.assertTrue('HeartRate' in tags) | |
| 3523 self.assertEqual(474, int(tags['HeartRate'])) | |
| 3524 | |
| 3525 tags = DoGet(_REMOTE, '/instances/%s/simplified-tags' % i) | |
| 3526 self.assertTrue('SoftwareVersions' in tags) | |
| 3527 self.assertEqual(None, tags['SoftwareVersions']) | |
| 3528 | |
| 3529 tags = DoGet(_REMOTE, '/instances/%s/tags?simplify&ignore-length=0018-1020' % i) | |
| 3530 self.assertTrue('SoftwareVersions' in tags) | |
| 3531 self.assertTrue(tags['SoftwareVersions'].startswith('Lorem ipsum dolor sit amet')) | |
| 3532 | |
| 3533 tags = DoGet(_REMOTE, '/instances/%s/tags?simplify&ignore-length=SoftwareVersions' % i) | |
| 3534 self.assertTrue('SoftwareVersions' in tags) | |
| 3535 self.assertTrue(tags['SoftwareVersions'].startswith('Lorem ipsum dolor sit amet')) | |
| 3536 | |
| 3537 tags = DoGet(_REMOTE, '/series/%s/instances-tags' % series) | |
| 3538 self.assertEqual(1, len(tags)) | |
| 3539 self.assertTrue(i in tags.keys()) | |
| 3540 self.assertTrue('0018,1020' in tags[i]) | |
| 3541 self.assertEqual('TooLong', tags[i]['0018,1020']['Type']) | |
| 3542 | |
| 3543 tags = DoGet(_REMOTE, '/series/%s/instances-tags?ignore-length=SoftwareVersions' % series) | |
| 3544 self.assertEqual(1, len(tags)) | |
| 3545 self.assertTrue(i in tags.keys()) | |
| 3546 self.assertTrue('0018,1020' in tags[i]) | |
| 3547 self.assertEqual('String', tags[i]['0018,1020']['Type']) | |
| 3548 self.assertTrue(tags[i]['0018,1020']['Value'].startswith('Lorem ipsum dolor sit amet')) | |
| 3549 | |
|
127
1eea4d3a1ba9
test_extended_media
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
126
diff
changeset
|
3550 |
|
1eea4d3a1ba9
test_extended_media
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
126
diff
changeset
|
3551 def test_extended_media(self): |
|
1eea4d3a1ba9
test_extended_media
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
126
diff
changeset
|
3552 UploadInstance(_REMOTE, 'Knee/T1/IM-0001-0001.dcm') |
|
1eea4d3a1ba9
test_extended_media
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
126
diff
changeset
|
3553 |
|
1eea4d3a1ba9
test_extended_media
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
126
diff
changeset
|
3554 z = GetArchive(_REMOTE, '/patients/%s/media?extended' % DoGet(_REMOTE, '/patients')[0]) |
|
1eea4d3a1ba9
test_extended_media
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
126
diff
changeset
|
3555 self.assertEqual(2, len(z.namelist())) |
|
1eea4d3a1ba9
test_extended_media
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
126
diff
changeset
|
3556 self.assertTrue('IMAGES/IM0' in z.namelist()) |
|
1eea4d3a1ba9
test_extended_media
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
126
diff
changeset
|
3557 self.assertTrue('DICOMDIR' in z.namelist()) |
|
1eea4d3a1ba9
test_extended_media
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
126
diff
changeset
|
3558 |
|
1eea4d3a1ba9
test_extended_media
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
126
diff
changeset
|
3559 try: |
|
1eea4d3a1ba9
test_extended_media
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
126
diff
changeset
|
3560 os.remove('/tmp/DICOMDIR') |
|
1eea4d3a1ba9
test_extended_media
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
126
diff
changeset
|
3561 except: |
|
1eea4d3a1ba9
test_extended_media
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
126
diff
changeset
|
3562 # The file does not exist |
|
1eea4d3a1ba9
test_extended_media
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
126
diff
changeset
|
3563 pass |
|
1eea4d3a1ba9
test_extended_media
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
126
diff
changeset
|
3564 |
|
1eea4d3a1ba9
test_extended_media
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
126
diff
changeset
|
3565 z.extract('DICOMDIR', '/tmp') |
|
1eea4d3a1ba9
test_extended_media
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
126
diff
changeset
|
3566 a = subprocess.check_output([ FindExecutable('dciodvfy'), '/tmp/DICOMDIR' ], |
|
1eea4d3a1ba9
test_extended_media
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
126
diff
changeset
|
3567 stderr = subprocess.STDOUT).split('\n') |
|
1eea4d3a1ba9
test_extended_media
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
126
diff
changeset
|
3568 self.assertEqual(5, len(a)) |
|
1eea4d3a1ba9
test_extended_media
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
126
diff
changeset
|
3569 self.assertTrue(a[0].startswith('Warning')) |
|
1eea4d3a1ba9
test_extended_media
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
126
diff
changeset
|
3570 self.assertEqual('BasicDirectory', a[1]) |
|
1eea4d3a1ba9
test_extended_media
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
126
diff
changeset
|
3571 self.assertTrue('not present in standard DICOM IOD' in a[2]) |
|
1eea4d3a1ba9
test_extended_media
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
126
diff
changeset
|
3572 self.assertTrue('not present in standard DICOM IOD' in a[3]) |
|
1eea4d3a1ba9
test_extended_media
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
126
diff
changeset
|
3573 self.assertEqual('', a[4]) |
|
1eea4d3a1ba9
test_extended_media
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
126
diff
changeset
|
3574 |
|
1eea4d3a1ba9
test_extended_media
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
126
diff
changeset
|
3575 a = subprocess.check_output([ FindExecutable('dcentvfy'), '/tmp/DICOMDIR' ], |
|
1eea4d3a1ba9
test_extended_media
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
126
diff
changeset
|
3576 stderr = subprocess.STDOUT).split('\n') |
|
1eea4d3a1ba9
test_extended_media
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
126
diff
changeset
|
3577 self.assertEqual(1, len(a)) |
|
1eea4d3a1ba9
test_extended_media
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
126
diff
changeset
|
3578 self.assertEqual('', a[0]) |
|
1eea4d3a1ba9
test_extended_media
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
126
diff
changeset
|
3579 |
|
1eea4d3a1ba9
test_extended_media
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
126
diff
changeset
|
3580 a = subprocess.check_output([ FindExecutable('dcm2xml'), '/tmp/DICOMDIR' ]) |
|
1eea4d3a1ba9
test_extended_media
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
126
diff
changeset
|
3581 self.assertTrue(re.search('1.3.46.670589.11.17521.5.0.3124.2008081908590448738', a) != None) |
|
1eea4d3a1ba9
test_extended_media
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
126
diff
changeset
|
3582 |
|
1eea4d3a1ba9
test_extended_media
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
126
diff
changeset
|
3583 # Check the presence of the series description (extended tag) |
|
1eea4d3a1ba9
test_extended_media
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
126
diff
changeset
|
3584 self.assertTrue(re.search('T1W_aTSE', a) != None) |
|
1eea4d3a1ba9
test_extended_media
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
126
diff
changeset
|
3585 |
|
1eea4d3a1ba9
test_extended_media
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
126
diff
changeset
|
3586 os.remove('/tmp/DICOMDIR') |
|
1eea4d3a1ba9
test_extended_media
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
126
diff
changeset
|
3587 |
|
1eea4d3a1ba9
test_extended_media
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
126
diff
changeset
|
3588 |
|
132
149144d854bb
Orthanc.test_anonymize_relationships_1/2
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
130
diff
changeset
|
3589 def test_anonymize_relationships_1(self): |
|
133
f0d4c4707e64
test_anonymize_relationships_3
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
132
diff
changeset
|
3590 UploadInstance(_REMOTE, 'Knee/T1/IM-0001-0001.dcm') |
|
f0d4c4707e64
test_anonymize_relationships_3
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
132
diff
changeset
|
3591 UploadInstance(_REMOTE, 'Knee/T1/IM-0001-0002.dcm') |
|
132
149144d854bb
Orthanc.test_anonymize_relationships_1/2
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
130
diff
changeset
|
3592 study = '0a9b3153-2512774b-2d9580de-1fc3dcf6-3bd83918' |
|
149144d854bb
Orthanc.test_anonymize_relationships_1/2
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
130
diff
changeset
|
3593 |
|
149144d854bb
Orthanc.test_anonymize_relationships_1/2
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
130
diff
changeset
|
3594 anonymized = DoPost(_REMOTE, '/studies/%s/anonymize' % study, |
|
149144d854bb
Orthanc.test_anonymize_relationships_1/2
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
130
diff
changeset
|
3595 '{}', |
|
149144d854bb
Orthanc.test_anonymize_relationships_1/2
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
130
diff
changeset
|
3596 'application/json')['ID'] |
|
149144d854bb
Orthanc.test_anonymize_relationships_1/2
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
130
diff
changeset
|
3597 |
|
149144d854bb
Orthanc.test_anonymize_relationships_1/2
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
130
diff
changeset
|
3598 a = DoGet(_REMOTE, '/studies/%s/instances' % study) |
|
149144d854bb
Orthanc.test_anonymize_relationships_1/2
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
130
diff
changeset
|
3599 self.assertEqual(2, len(a)) |
|
149144d854bb
Orthanc.test_anonymize_relationships_1/2
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
130
diff
changeset
|
3600 a1 = a[0]['ID'] |
|
149144d854bb
Orthanc.test_anonymize_relationships_1/2
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
130
diff
changeset
|
3601 a2 = a[1]['ID'] |
|
149144d854bb
Orthanc.test_anonymize_relationships_1/2
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
130
diff
changeset
|
3602 |
|
149144d854bb
Orthanc.test_anonymize_relationships_1/2
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
130
diff
changeset
|
3603 b = DoGet(_REMOTE, '/studies/%s/instances' % anonymized) |
|
149144d854bb
Orthanc.test_anonymize_relationships_1/2
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
130
diff
changeset
|
3604 self.assertEqual(2, len(b)) |
|
149144d854bb
Orthanc.test_anonymize_relationships_1/2
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
130
diff
changeset
|
3605 b1 = b[0]['ID'] |
|
149144d854bb
Orthanc.test_anonymize_relationships_1/2
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
130
diff
changeset
|
3606 b2 = b[1]['ID'] |
|
149144d854bb
Orthanc.test_anonymize_relationships_1/2
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
130
diff
changeset
|
3607 |
|
149144d854bb
Orthanc.test_anonymize_relationships_1/2
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
130
diff
changeset
|
3608 SEQUENCE = '/instances/%s/content/ReferencedImageSequence' |
|
149144d854bb
Orthanc.test_anonymize_relationships_1/2
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
130
diff
changeset
|
3609 SOP = '/instances/%s/content/ReferencedImageSequence/%d/ReferencedSOPInstanceUID' |
|
149144d854bb
Orthanc.test_anonymize_relationships_1/2
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
130
diff
changeset
|
3610 CLASS = '/instances/%s/content/ReferencedImageSequence/%d/ReferencedSOPClassUID' |
|
149144d854bb
Orthanc.test_anonymize_relationships_1/2
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
130
diff
changeset
|
3611 FRAME = '/instances/%s/content/FrameOfReferenceUID' |
|
149144d854bb
Orthanc.test_anonymize_relationships_1/2
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
130
diff
changeset
|
3612 |
|
149144d854bb
Orthanc.test_anonymize_relationships_1/2
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
130
diff
changeset
|
3613 self.assertEqual(DoGet(_REMOTE, FRAME % a1), |
|
149144d854bb
Orthanc.test_anonymize_relationships_1/2
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
130
diff
changeset
|
3614 DoGet(_REMOTE, FRAME % a2)) |
|
149144d854bb
Orthanc.test_anonymize_relationships_1/2
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
130
diff
changeset
|
3615 self.assertEqual(DoGet(_REMOTE, FRAME % b1), |
|
149144d854bb
Orthanc.test_anonymize_relationships_1/2
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
130
diff
changeset
|
3616 DoGet(_REMOTE, FRAME % b2)) |
|
149144d854bb
Orthanc.test_anonymize_relationships_1/2
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
130
diff
changeset
|
3617 self.assertNotEqual(DoGet(_REMOTE, FRAME % a1), |
|
149144d854bb
Orthanc.test_anonymize_relationships_1/2
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
130
diff
changeset
|
3618 DoGet(_REMOTE, FRAME % b1)) |
|
149144d854bb
Orthanc.test_anonymize_relationships_1/2
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
130
diff
changeset
|
3619 self.assertNotEqual(DoGet(_REMOTE, FRAME % a2), |
|
149144d854bb
Orthanc.test_anonymize_relationships_1/2
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
130
diff
changeset
|
3620 DoGet(_REMOTE, FRAME % b2)) |
|
149144d854bb
Orthanc.test_anonymize_relationships_1/2
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
130
diff
changeset
|
3621 |
|
149144d854bb
Orthanc.test_anonymize_relationships_1/2
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
130
diff
changeset
|
3622 self.assertEqual(3, len(DoGet(_REMOTE, SEQUENCE % a1))) |
|
149144d854bb
Orthanc.test_anonymize_relationships_1/2
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
130
diff
changeset
|
3623 self.assertEqual(3, len(DoGet(_REMOTE, SEQUENCE % a2))) |
|
149144d854bb
Orthanc.test_anonymize_relationships_1/2
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
130
diff
changeset
|
3624 self.assertEqual(3, len(DoGet(_REMOTE, SEQUENCE % b1))) |
|
149144d854bb
Orthanc.test_anonymize_relationships_1/2
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
130
diff
changeset
|
3625 self.assertEqual(3, len(DoGet(_REMOTE, SEQUENCE % b2))) |
|
149144d854bb
Orthanc.test_anonymize_relationships_1/2
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
130
diff
changeset
|
3626 |
|
149144d854bb
Orthanc.test_anonymize_relationships_1/2
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
130
diff
changeset
|
3627 for i in range(3): |
|
149144d854bb
Orthanc.test_anonymize_relationships_1/2
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
130
diff
changeset
|
3628 self.assertEqual(DoGet(_REMOTE, SOP % (a1, i)), |
|
149144d854bb
Orthanc.test_anonymize_relationships_1/2
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
130
diff
changeset
|
3629 DoGet(_REMOTE, SOP % (a2, i))) |
|
149144d854bb
Orthanc.test_anonymize_relationships_1/2
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
130
diff
changeset
|
3630 self.assertEqual(DoGet(_REMOTE, SOP % (b1, i)), |
|
149144d854bb
Orthanc.test_anonymize_relationships_1/2
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
130
diff
changeset
|
3631 DoGet(_REMOTE, SOP % (b2, i))) |
|
149144d854bb
Orthanc.test_anonymize_relationships_1/2
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
130
diff
changeset
|
3632 self.assertNotEqual(DoGet(_REMOTE, SOP % (a1, i)), |
|
149144d854bb
Orthanc.test_anonymize_relationships_1/2
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
130
diff
changeset
|
3633 DoGet(_REMOTE, SOP % (b1, i))) |
|
149144d854bb
Orthanc.test_anonymize_relationships_1/2
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
130
diff
changeset
|
3634 self.assertNotEqual(DoGet(_REMOTE, SOP % (a2, i)), |
|
149144d854bb
Orthanc.test_anonymize_relationships_1/2
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
130
diff
changeset
|
3635 DoGet(_REMOTE, SOP % (b2, i))) |
|
149144d854bb
Orthanc.test_anonymize_relationships_1/2
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
130
diff
changeset
|
3636 self.assertEqual(DoGet(_REMOTE, CLASS % (a1, i)), |
|
149144d854bb
Orthanc.test_anonymize_relationships_1/2
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
130
diff
changeset
|
3637 DoGet(_REMOTE, CLASS % (b1, i))) |
|
149144d854bb
Orthanc.test_anonymize_relationships_1/2
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
130
diff
changeset
|
3638 self.assertEqual(DoGet(_REMOTE, CLASS % (a2, i)), |
|
149144d854bb
Orthanc.test_anonymize_relationships_1/2
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
130
diff
changeset
|
3639 DoGet(_REMOTE, CLASS % (b2, i))) |
|
149144d854bb
Orthanc.test_anonymize_relationships_1/2
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
130
diff
changeset
|
3640 |
|
149144d854bb
Orthanc.test_anonymize_relationships_1/2
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
130
diff
changeset
|
3641 |
|
149144d854bb
Orthanc.test_anonymize_relationships_1/2
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
130
diff
changeset
|
3642 def test_anonymize_relationships_2(self): |
|
133
f0d4c4707e64
test_anonymize_relationships_3
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
132
diff
changeset
|
3643 UploadInstance(_REMOTE, 'Comunix/Ct/IM-0001-0001.dcm') |
|
f0d4c4707e64
test_anonymize_relationships_3
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
132
diff
changeset
|
3644 UploadInstance(_REMOTE, 'Comunix/Ct/IM-0001-0002.dcm') |
|
132
149144d854bb
Orthanc.test_anonymize_relationships_1/2
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
130
diff
changeset
|
3645 study = '6c65289b-db2fcb71-7eaf73f4-8e12470c-a4d6d7cf' |
|
149144d854bb
Orthanc.test_anonymize_relationships_1/2
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
130
diff
changeset
|
3646 |
|
149144d854bb
Orthanc.test_anonymize_relationships_1/2
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
130
diff
changeset
|
3647 anonymized = DoPost(_REMOTE, '/studies/%s/anonymize' % study, |
|
149144d854bb
Orthanc.test_anonymize_relationships_1/2
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
130
diff
changeset
|
3648 '{}', |
|
149144d854bb
Orthanc.test_anonymize_relationships_1/2
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
130
diff
changeset
|
3649 'application/json')['ID'] |
|
149144d854bb
Orthanc.test_anonymize_relationships_1/2
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
130
diff
changeset
|
3650 |
|
149144d854bb
Orthanc.test_anonymize_relationships_1/2
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
130
diff
changeset
|
3651 a = DoGet(_REMOTE, '/studies/%s/instances' % study) |
|
149144d854bb
Orthanc.test_anonymize_relationships_1/2
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
130
diff
changeset
|
3652 self.assertEqual(2, len(a)) |
|
149144d854bb
Orthanc.test_anonymize_relationships_1/2
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
130
diff
changeset
|
3653 a1 = a[0]['ID'] |
|
149144d854bb
Orthanc.test_anonymize_relationships_1/2
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
130
diff
changeset
|
3654 a2 = a[1]['ID'] |
|
149144d854bb
Orthanc.test_anonymize_relationships_1/2
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
130
diff
changeset
|
3655 |
|
149144d854bb
Orthanc.test_anonymize_relationships_1/2
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
130
diff
changeset
|
3656 b = DoGet(_REMOTE, '/studies/%s/instances' % anonymized) |
|
149144d854bb
Orthanc.test_anonymize_relationships_1/2
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
130
diff
changeset
|
3657 self.assertEqual(2, len(b)) |
|
149144d854bb
Orthanc.test_anonymize_relationships_1/2
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
130
diff
changeset
|
3658 b1 = b[0]['ID'] |
|
149144d854bb
Orthanc.test_anonymize_relationships_1/2
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
130
diff
changeset
|
3659 b2 = b[1]['ID'] |
|
149144d854bb
Orthanc.test_anonymize_relationships_1/2
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
130
diff
changeset
|
3660 |
|
149144d854bb
Orthanc.test_anonymize_relationships_1/2
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
130
diff
changeset
|
3661 SEQUENCE = '/instances/%s/content/SourceImageSequence' |
|
149144d854bb
Orthanc.test_anonymize_relationships_1/2
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
130
diff
changeset
|
3662 SOP = '/instances/%s/content/SourceImageSequence/%d/ReferencedSOPInstanceUID' |
|
149144d854bb
Orthanc.test_anonymize_relationships_1/2
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
130
diff
changeset
|
3663 CLASS = '/instances/%s/content/SourceImageSequence/%d/ReferencedSOPClassUID' |
|
149144d854bb
Orthanc.test_anonymize_relationships_1/2
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
130
diff
changeset
|
3664 |
|
149144d854bb
Orthanc.test_anonymize_relationships_1/2
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
130
diff
changeset
|
3665 self.assertEqual(1, len(DoGet(_REMOTE, SEQUENCE % a1))) |
|
149144d854bb
Orthanc.test_anonymize_relationships_1/2
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
130
diff
changeset
|
3666 self.assertEqual(1, len(DoGet(_REMOTE, SEQUENCE % a2))) |
|
149144d854bb
Orthanc.test_anonymize_relationships_1/2
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
130
diff
changeset
|
3667 self.assertEqual(1, len(DoGet(_REMOTE, SEQUENCE % b1))) |
|
149144d854bb
Orthanc.test_anonymize_relationships_1/2
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
130
diff
changeset
|
3668 self.assertEqual(1, len(DoGet(_REMOTE, SEQUENCE % b2))) |
|
149144d854bb
Orthanc.test_anonymize_relationships_1/2
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
130
diff
changeset
|
3669 self.assertEqual(DoGet(_REMOTE, SOP % (a1, 0)), |
|
149144d854bb
Orthanc.test_anonymize_relationships_1/2
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
130
diff
changeset
|
3670 DoGet(_REMOTE, SOP % (a2, 0))) |
|
149144d854bb
Orthanc.test_anonymize_relationships_1/2
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
130
diff
changeset
|
3671 self.assertEqual(DoGet(_REMOTE, SOP % (b1, 0)), |
|
149144d854bb
Orthanc.test_anonymize_relationships_1/2
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
130
diff
changeset
|
3672 DoGet(_REMOTE, SOP % (b2, 0))) |
|
149144d854bb
Orthanc.test_anonymize_relationships_1/2
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
130
diff
changeset
|
3673 self.assertNotEqual(DoGet(_REMOTE, SOP % (a1, 0)), |
|
149144d854bb
Orthanc.test_anonymize_relationships_1/2
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
130
diff
changeset
|
3674 DoGet(_REMOTE, SOP % (b1, 0))) |
|
149144d854bb
Orthanc.test_anonymize_relationships_1/2
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
130
diff
changeset
|
3675 self.assertNotEqual(DoGet(_REMOTE, SOP % (a2, 0)), |
|
149144d854bb
Orthanc.test_anonymize_relationships_1/2
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
130
diff
changeset
|
3676 DoGet(_REMOTE, SOP % (b2, 0))) |
|
149144d854bb
Orthanc.test_anonymize_relationships_1/2
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
130
diff
changeset
|
3677 self.assertEqual(DoGet(_REMOTE, CLASS % (a1, 0)), |
|
149144d854bb
Orthanc.test_anonymize_relationships_1/2
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
130
diff
changeset
|
3678 DoGet(_REMOTE, CLASS % (b1, 0))) |
|
149144d854bb
Orthanc.test_anonymize_relationships_1/2
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
130
diff
changeset
|
3679 self.assertEqual(DoGet(_REMOTE, CLASS % (a2, 0)), |
|
149144d854bb
Orthanc.test_anonymize_relationships_1/2
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
130
diff
changeset
|
3680 DoGet(_REMOTE, CLASS % (b2, 0))) |
|
133
f0d4c4707e64
test_anonymize_relationships_3
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
132
diff
changeset
|
3681 |
|
f0d4c4707e64
test_anonymize_relationships_3
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
132
diff
changeset
|
3682 |
|
f0d4c4707e64
test_anonymize_relationships_3
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
132
diff
changeset
|
3683 def test_anonymize_relationships_3(self): |
|
f0d4c4707e64
test_anonymize_relationships_3
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
132
diff
changeset
|
3684 sr1 = UploadInstance(_REMOTE, 'HierarchicalAnonymization/StructuredReports/IM0')['ID'] |
|
f0d4c4707e64
test_anonymize_relationships_3
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
132
diff
changeset
|
3685 mr1 = UploadInstance(_REMOTE, 'HierarchicalAnonymization/StructuredReports/IM631')['ID'] |
|
f0d4c4707e64
test_anonymize_relationships_3
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
132
diff
changeset
|
3686 study = 'ef351eb2-c1147229-062736b8-35a151e3-e32d526b' |
|
f0d4c4707e64
test_anonymize_relationships_3
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
132
diff
changeset
|
3687 |
|
f0d4c4707e64
test_anonymize_relationships_3
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
132
diff
changeset
|
3688 anonymized = DoPost(_REMOTE, '/studies/%s/anonymize' % study, |
|
f0d4c4707e64
test_anonymize_relationships_3
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
132
diff
changeset
|
3689 { "Keep" : [ "ContentSequence" ] }) ['ID'] |
|
f0d4c4707e64
test_anonymize_relationships_3
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
132
diff
changeset
|
3690 |
|
f0d4c4707e64
test_anonymize_relationships_3
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
132
diff
changeset
|
3691 a = DoGet(_REMOTE, '/studies/%s/instances' % anonymized) |
|
f0d4c4707e64
test_anonymize_relationships_3
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
132
diff
changeset
|
3692 self.assertEqual(2, len(a)) |
|
f0d4c4707e64
test_anonymize_relationships_3
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
132
diff
changeset
|
3693 |
|
f0d4c4707e64
test_anonymize_relationships_3
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
132
diff
changeset
|
3694 if DoGet(_REMOTE, '/instances/%s/content/Modality' % a[0]['ID']) == 'SR': |
|
f0d4c4707e64
test_anonymize_relationships_3
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
132
diff
changeset
|
3695 sr2 = a[0]['ID'] |
|
f0d4c4707e64
test_anonymize_relationships_3
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
132
diff
changeset
|
3696 mr2 = a[1]['ID'] |
|
f0d4c4707e64
test_anonymize_relationships_3
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
132
diff
changeset
|
3697 else: |
|
f0d4c4707e64
test_anonymize_relationships_3
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
132
diff
changeset
|
3698 sr2 = a[1]['ID'] |
|
f0d4c4707e64
test_anonymize_relationships_3
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
132
diff
changeset
|
3699 mr2 = a[0]['ID'] |
|
f0d4c4707e64
test_anonymize_relationships_3
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
132
diff
changeset
|
3700 |
|
f0d4c4707e64
test_anonymize_relationships_3
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
132
diff
changeset
|
3701 self.assertEqual(DoGet(_REMOTE, '/instances/%s/content/Modality' % sr1), |
|
f0d4c4707e64
test_anonymize_relationships_3
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
132
diff
changeset
|
3702 DoGet(_REMOTE, '/instances/%s/content/Modality' % sr2)) |
|
f0d4c4707e64
test_anonymize_relationships_3
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
132
diff
changeset
|
3703 self.assertEqual(DoGet(_REMOTE, '/instances/%s/content/Modality' % mr1), |
|
f0d4c4707e64
test_anonymize_relationships_3
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
132
diff
changeset
|
3704 DoGet(_REMOTE, '/instances/%s/content/Modality' % mr2)) |
|
f0d4c4707e64
test_anonymize_relationships_3
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
132
diff
changeset
|
3705 |
|
f0d4c4707e64
test_anonymize_relationships_3
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
132
diff
changeset
|
3706 mrUid1 = DoGet(_REMOTE, '/instances/%s' % mr1)['MainDicomTags']['SOPInstanceUID'] |
|
f0d4c4707e64
test_anonymize_relationships_3
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
132
diff
changeset
|
3707 mrUid2 = DoGet(_REMOTE, '/instances/%s' % mr2)['MainDicomTags']['SOPInstanceUID'] |
|
f0d4c4707e64
test_anonymize_relationships_3
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
132
diff
changeset
|
3708 mrSeries1 = DoGet(_REMOTE, '/instances/%s/content/SeriesInstanceUID' % mr1).strip('\x00') |
|
f0d4c4707e64
test_anonymize_relationships_3
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
132
diff
changeset
|
3709 mrSeries2 = DoGet(_REMOTE, '/instances/%s/content/SeriesInstanceUID' % mr2).strip('\x00') |
|
f0d4c4707e64
test_anonymize_relationships_3
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
132
diff
changeset
|
3710 mrStudy1 = DoGet(_REMOTE, '/instances/%s/content/StudyInstanceUID' % mr1).strip('\x00') |
|
f0d4c4707e64
test_anonymize_relationships_3
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
132
diff
changeset
|
3711 mrStudy2 = DoGet(_REMOTE, '/instances/%s/content/StudyInstanceUID' % mr2).strip('\x00') |
|
f0d4c4707e64
test_anonymize_relationships_3
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
132
diff
changeset
|
3712 |
|
f0d4c4707e64
test_anonymize_relationships_3
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
132
diff
changeset
|
3713 PATH1 = '/instances/%s/content/CurrentRequestedProcedureEvidenceSequence' |
|
f0d4c4707e64
test_anonymize_relationships_3
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
132
diff
changeset
|
3714 PATH2 = PATH1 + '/0/ReferencedSeriesSequence' |
|
f0d4c4707e64
test_anonymize_relationships_3
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
132
diff
changeset
|
3715 PATH3 = PATH2 + '/0/ReferencedSOPSequence' |
|
f0d4c4707e64
test_anonymize_relationships_3
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
132
diff
changeset
|
3716 PATH4 = PATH3 + '/0/ReferencedSOPInstanceUID' |
|
f0d4c4707e64
test_anonymize_relationships_3
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
132
diff
changeset
|
3717 PATH5 = PATH3 + '/0/ReferencedSOPClassUID' |
|
f0d4c4707e64
test_anonymize_relationships_3
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
132
diff
changeset
|
3718 |
|
f0d4c4707e64
test_anonymize_relationships_3
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
132
diff
changeset
|
3719 self.assertEqual(1, len(DoGet(_REMOTE, PATH1 % sr1))) |
|
f0d4c4707e64
test_anonymize_relationships_3
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
132
diff
changeset
|
3720 self.assertEqual(1, len(DoGet(_REMOTE, PATH2 % sr1))) |
|
f0d4c4707e64
test_anonymize_relationships_3
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
132
diff
changeset
|
3721 self.assertEqual(1, len(DoGet(_REMOTE, PATH3 % sr1))) |
|
f0d4c4707e64
test_anonymize_relationships_3
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
132
diff
changeset
|
3722 self.assertEqual(DoGet(_REMOTE, PATH4 % sr1), mrUid1) |
|
f0d4c4707e64
test_anonymize_relationships_3
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
132
diff
changeset
|
3723 self.assertEqual(mrSeries1, DoGet(_REMOTE, (PATH2 + '/0/SeriesInstanceUID') % sr1).strip('\x00')) |
|
f0d4c4707e64
test_anonymize_relationships_3
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
132
diff
changeset
|
3724 self.assertEqual(mrStudy1, DoGet(_REMOTE, (PATH1 + '/0/StudyInstanceUID') % sr1).strip('\x00')) |
|
f0d4c4707e64
test_anonymize_relationships_3
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
132
diff
changeset
|
3725 |
|
f0d4c4707e64
test_anonymize_relationships_3
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
132
diff
changeset
|
3726 self.assertEqual(1, len(DoGet(_REMOTE, PATH1 % sr2))) |
|
f0d4c4707e64
test_anonymize_relationships_3
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
132
diff
changeset
|
3727 self.assertEqual(1, len(DoGet(_REMOTE, PATH2 % sr2))) |
|
f0d4c4707e64
test_anonymize_relationships_3
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
132
diff
changeset
|
3728 self.assertEqual(1, len(DoGet(_REMOTE, PATH3 % sr2))) |
|
f0d4c4707e64
test_anonymize_relationships_3
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
132
diff
changeset
|
3729 self.assertEqual(DoGet(_REMOTE, PATH5 % sr1), DoGet(_REMOTE, PATH5 % sr2)) |
|
f0d4c4707e64
test_anonymize_relationships_3
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
132
diff
changeset
|
3730 |
|
f0d4c4707e64
test_anonymize_relationships_3
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
132
diff
changeset
|
3731 self.assertEqual(mrUid2, DoGet(_REMOTE, PATH4 % sr2).strip('\x00')) |
|
f0d4c4707e64
test_anonymize_relationships_3
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
132
diff
changeset
|
3732 self.assertEqual(mrSeries2, DoGet(_REMOTE, (PATH2 + '/0/SeriesInstanceUID') % sr2).strip('\x00')) |
|
f0d4c4707e64
test_anonymize_relationships_3
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
132
diff
changeset
|
3733 self.assertEqual(mrStudy2, DoGet(_REMOTE, (PATH1 + '/0/StudyInstanceUID') % sr2).strip('\x00')) |
|
f0d4c4707e64
test_anonymize_relationships_3
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
132
diff
changeset
|
3734 |
|
f0d4c4707e64
test_anonymize_relationships_3
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
132
diff
changeset
|
3735 content1 = DoGet(_REMOTE, '/instances/%s/tags?simplify' % sr1) ['ContentSequence'] |
|
f0d4c4707e64
test_anonymize_relationships_3
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
132
diff
changeset
|
3736 content2 = DoGet(_REMOTE, '/instances/%s/tags?simplify' % sr2) ['ContentSequence'] |
|
f0d4c4707e64
test_anonymize_relationships_3
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
132
diff
changeset
|
3737 self.assertEqual(str(content1), str(content2)) |
|
141
5de178abe4d8
test_bitbucket_issue_94
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
138
diff
changeset
|
3738 |
|
5de178abe4d8
test_bitbucket_issue_94
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
138
diff
changeset
|
3739 |
|
5de178abe4d8
test_bitbucket_issue_94
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
138
diff
changeset
|
3740 def test_bitbucket_issue_94(self): |
|
5de178abe4d8
test_bitbucket_issue_94
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
138
diff
changeset
|
3741 # "a simple instance modification should not modify FrameOfReferenceUID + ..." |
|
5de178abe4d8
test_bitbucket_issue_94
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
138
diff
changeset
|
3742 # https://bitbucket.org/sjodogne/orthanc/issues/94 |
|
5de178abe4d8
test_bitbucket_issue_94
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
138
diff
changeset
|
3743 i = UploadInstance(_REMOTE, 'Issue94.dcm')['ID'] |
|
5de178abe4d8
test_bitbucket_issue_94
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
138
diff
changeset
|
3744 |
|
5de178abe4d8
test_bitbucket_issue_94
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
138
diff
changeset
|
3745 source = DoGet(_REMOTE, '/instances/%s/attachments/dicom/data' % i) |
|
5de178abe4d8
test_bitbucket_issue_94
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
138
diff
changeset
|
3746 |
|
5de178abe4d8
test_bitbucket_issue_94
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
138
diff
changeset
|
3747 modified = DoPost(_REMOTE, '/instances/%s/modify' % i, |
|
5de178abe4d8
test_bitbucket_issue_94
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
138
diff
changeset
|
3748 { "Replace" : {"PatientID" : "toto"}, "Force": True}) |
|
5de178abe4d8
test_bitbucket_issue_94
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
138
diff
changeset
|
3749 |
|
5de178abe4d8
test_bitbucket_issue_94
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
138
diff
changeset
|
3750 anonymized = DoPost(_REMOTE, '/instances/%s/anonymize' % i) |
|
5de178abe4d8
test_bitbucket_issue_94
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
138
diff
changeset
|
3751 |
|
5de178abe4d8
test_bitbucket_issue_94
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
138
diff
changeset
|
3752 a = ExtractDicomTags(source, [ 'FrameOfReferenceUID' ]) |
|
5de178abe4d8
test_bitbucket_issue_94
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
138
diff
changeset
|
3753 self.assertEqual(1, len(a)) |
|
5de178abe4d8
test_bitbucket_issue_94
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
138
diff
changeset
|
3754 |
|
5de178abe4d8
test_bitbucket_issue_94
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
138
diff
changeset
|
3755 b = ExtractDicomTags(modified, [ 'FrameOfReferenceUID' ]) |
|
5de178abe4d8
test_bitbucket_issue_94
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
138
diff
changeset
|
3756 self.assertEqual(1, len(b)) |
|
5de178abe4d8
test_bitbucket_issue_94
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
138
diff
changeset
|
3757 |
|
5de178abe4d8
test_bitbucket_issue_94
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
138
diff
changeset
|
3758 c = ExtractDicomTags(anonymized, [ 'FrameOfReferenceUID' ]) |
|
5de178abe4d8
test_bitbucket_issue_94
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
138
diff
changeset
|
3759 self.assertEqual(1, len(c)) |
|
5de178abe4d8
test_bitbucket_issue_94
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
138
diff
changeset
|
3760 |
|
5de178abe4d8
test_bitbucket_issue_94
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
138
diff
changeset
|
3761 self.assertEqual(a, b) # Modified DICOM |
|
5de178abe4d8
test_bitbucket_issue_94
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
138
diff
changeset
|
3762 self.assertNotEqual(a, c) # Anonymized DICOM |
|
143
28d50ffac07d
test_metadata_origin
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
142
diff
changeset
|
3763 |
|
28d50ffac07d
test_metadata_origin
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
142
diff
changeset
|
3764 |
|
28d50ffac07d
test_metadata_origin
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
142
diff
changeset
|
3765 def test_metadata_origin(self): |
|
28d50ffac07d
test_metadata_origin
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
142
diff
changeset
|
3766 # Upload using the REST API |
|
144
7809fdf8056f
testing metadata?expand
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
143
diff
changeset
|
3767 i = UploadInstance(_REMOTE, 'Knee/T1/IM-0001-0001.dcm')['ID'] |
|
143
28d50ffac07d
test_metadata_origin
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
142
diff
changeset
|
3768 self.assertEqual('RestApi', DoGet(_REMOTE, '/instances/%s/metadata/Origin' % i)) |
|
28d50ffac07d
test_metadata_origin
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
142
diff
changeset
|
3769 self.assertEqual('', DoGet(_REMOTE, '/instances/%s/metadata/RemoteAET' % i)) |
|
28d50ffac07d
test_metadata_origin
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
142
diff
changeset
|
3770 self.assertNotEqual('', DoGet(_REMOTE, '/instances/%s/metadata/RemoteIP' % i)) |
|
28d50ffac07d
test_metadata_origin
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
142
diff
changeset
|
3771 self.assertRaises(Exception, lambda: DoGet(_REMOTE, '/instances/%s/metadata/CalledAET' % i)) |
|
28d50ffac07d
test_metadata_origin
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
142
diff
changeset
|
3772 self.assertEqual('alice', DoGet(_REMOTE, '/instances/%s/metadata/HttpUsername' % i)) |
|
28d50ffac07d
test_metadata_origin
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
142
diff
changeset
|
3773 |
|
144
7809fdf8056f
testing metadata?expand
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
143
diff
changeset
|
3774 m = DoGet(_REMOTE, '/instances/%s/metadata?expand' % i) |
|
7809fdf8056f
testing metadata?expand
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
143
diff
changeset
|
3775 self.assertEqual('RestApi', m['Origin']) |
|
7809fdf8056f
testing metadata?expand
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
143
diff
changeset
|
3776 self.assertEqual('', m['RemoteAET']) |
|
7809fdf8056f
testing metadata?expand
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
143
diff
changeset
|
3777 self.assertNotEqual('', m['RemoteIP']) |
|
7809fdf8056f
testing metadata?expand
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
143
diff
changeset
|
3778 self.assertFalse('CalledAET' in m) |
|
7809fdf8056f
testing metadata?expand
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
143
diff
changeset
|
3779 self.assertEqual('alice', m['HttpUsername']) |
|
7809fdf8056f
testing metadata?expand
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
143
diff
changeset
|
3780 |
|
7809fdf8056f
testing metadata?expand
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
143
diff
changeset
|
3781 self.assertEqual('1.2.840.10008.1.2.4.91', m['TransferSyntax']) |
|
7809fdf8056f
testing metadata?expand
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
143
diff
changeset
|
3782 self.assertEqual('1.2.840.10008.5.1.4.1.1.4', m['SopClassUid']) |
|
7809fdf8056f
testing metadata?expand
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
143
diff
changeset
|
3783 self.assertEqual('1', m['IndexInSeries']) |
|
7809fdf8056f
testing metadata?expand
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
143
diff
changeset
|
3784 self.assertTrue('ReceptionDate' in m) |
|
7809fdf8056f
testing metadata?expand
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
143
diff
changeset
|
3785 |
|
143
28d50ffac07d
test_metadata_origin
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
142
diff
changeset
|
3786 DoDelete(_REMOTE, '/instances/%s' % i) |
|
28d50ffac07d
test_metadata_origin
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
142
diff
changeset
|
3787 |
|
28d50ffac07d
test_metadata_origin
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
142
diff
changeset
|
3788 # Upload using the DICOM protocol |
|
28d50ffac07d
test_metadata_origin
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
142
diff
changeset
|
3789 subprocess.check_call([ FindExecutable('storescu'), |
|
28d50ffac07d
test_metadata_origin
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
142
diff
changeset
|
3790 _REMOTE['Server'], str(_REMOTE['DicomPort']), |
|
144
7809fdf8056f
testing metadata?expand
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
143
diff
changeset
|
3791 GetDatabasePath('Knee/T1/IM-0001-0001.dcm'), |
|
7809fdf8056f
testing metadata?expand
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
143
diff
changeset
|
3792 '-xw' ]) # Propose JPEG2000 |
|
143
28d50ffac07d
test_metadata_origin
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
142
diff
changeset
|
3793 self.assertEqual('DicomProtocol', DoGet(_REMOTE, '/instances/%s/metadata/Origin' % i)) |
|
28d50ffac07d
test_metadata_origin
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
142
diff
changeset
|
3794 self.assertEqual('STORESCU', DoGet(_REMOTE, '/instances/%s/metadata/RemoteAET' % i)) |
|
28d50ffac07d
test_metadata_origin
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
142
diff
changeset
|
3795 self.assertNotEqual('', DoGet(_REMOTE, '/instances/%s/metadata/RemoteIP' % i)) |
|
28d50ffac07d
test_metadata_origin
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
142
diff
changeset
|
3796 self.assertEqual('ANY-SCP', DoGet(_REMOTE, '/instances/%s/metadata/CalledAET' % i)) |
|
28d50ffac07d
test_metadata_origin
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
142
diff
changeset
|
3797 self.assertRaises(Exception, lambda: DoGet(_REMOTE, '/instances/%s/metadata/HttpUsername' % i)) |
|
144
7809fdf8056f
testing metadata?expand
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
143
diff
changeset
|
3798 |
|
7809fdf8056f
testing metadata?expand
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
143
diff
changeset
|
3799 m = DoGet(_REMOTE, '/instances/%s/metadata?expand' % i) |
|
7809fdf8056f
testing metadata?expand
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
143
diff
changeset
|
3800 self.assertEqual('DicomProtocol', m['Origin']) |
|
7809fdf8056f
testing metadata?expand
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
143
diff
changeset
|
3801 self.assertEqual('STORESCU', m['RemoteAET']) |
|
7809fdf8056f
testing metadata?expand
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
143
diff
changeset
|
3802 self.assertNotEqual('', m['RemoteIP']) |
|
7809fdf8056f
testing metadata?expand
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
143
diff
changeset
|
3803 self.assertEqual('ANY-SCP', m['CalledAET']) |
|
7809fdf8056f
testing metadata?expand
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3804 self.assertFalse('HttpUsername' in m) |
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3805 |
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3806 self.assertEqual('1.2.840.10008.1.2.4.91', m['TransferSyntax']) |
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3807 self.assertEqual('1.2.840.10008.5.1.4.1.1.4', m['SopClassUid']) |
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3808 self.assertEqual('1', m['IndexInSeries']) |
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3809 self.assertTrue('ReceptionDate' in m) |
| 147 | 3810 |
| 3811 | |
| 3812 def test_lua_deadlock(self): | |
| 3813 # Rana Asim Wajid (2018-07-14): "It does seem that the issue | |
| 3814 # is with the lua script I'm using for conversion of images to | |
| 3815 # JPEG2000. When the script is used with 1.4.0 the first | |
| 3816 # instance appears to be stored and then everything just | |
| 3817 # halts, ie Orthanc wont respond to anything after that." | |
| 3818 # https://groups.google.com/d/msg/orthanc-users/Rc-Beb42xc8/JUgdzrmCAgAJ | |
| 174 | 3819 InstallLuaScriptFromPath(_REMOTE, 'Lua/Jpeg2000Conversion.lua') |
| 147 | 3820 |
| 3821 subprocess.check_call([ FindExecutable('storescu'), | |
| 3822 _REMOTE['Server'], str(_REMOTE['DicomPort']), | |
| 3823 GetDatabasePath('Brainix/Flair/IM-0001-0001.dcm'), | |
| 3824 GetDatabasePath('Brainix/Flair/IM-0001-0002.dcm'), | |
| 3825 ]) | |
| 3826 | |
| 3827 instances = DoGet(_REMOTE, '/instances') | |
| 3828 self.assertEqual(2, len(instances)) | |
| 3829 | |
| 3830 t1 = DoGet(_REMOTE, '/instances/%s/metadata/TransferSyntax' % instances[0]) | |
| 3831 t2 = DoGet(_REMOTE, '/instances/%s/metadata/TransferSyntax' % instances[1]) | |
| 175 | 3832 self.assertEqual('1.2.840.10008.1.2.4.90', t1) # this will fail if libgdcm-tools is not installed |
| 147 | 3833 self.assertEqual(t1, t2); |
|
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3834 |
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3835 |
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3836 def test_find_group_length(self): |
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3837 # Orthanc <= 1.4.1 fails to answer C-FIND queries that contain |
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3838 # one of the Generic Group Length tags (*, 0x0000) |
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3839 a = UploadInstance(_REMOTE, 'Brainix/Flair/IM-0001-0001.dcm')['ID'] |
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3840 result = CallFindScu([ '-k', '0008,0052=STUDY', '-k', '0008,0000=80' ]) |
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3841 self.assertFalse('UnableToProcess' in result) |
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3842 self.assertFalse('E:' in result) |